##maf version=1 scoring=roast.v3.3 a score=13923.000000 s hg38.chr22_GL383582v2_alt 0 1 + 162811 T s panTro5.chr22 28753162 1 + 37823149 T i panTro5.chr22 N 0 C 0 s panPan2.chr22 41055317 1 + 50109623 T i panPan2.chr22 N 0 C 0 s gorGor5.CYUI01015375v1 3030224 1 + 4464012 T i gorGor5.CYUI01015375v1 N 0 C 0 s nomLeu3.chr7b 106560076 1 - 115148730 T i nomLeu3.chr7b N 0 C 0 s rheMac8.chr10 84182664 1 + 92844088 T i rheMac8.chr10 N 0 C 0 s macFas5.chr10 87527512 1 - 96509753 T i macFas5.chr10 N 0 C 0 s macNem1.NW_012012688v1 7016293 1 - 13098629 T i macNem1.NW_012012688v1 N 0 C 0 s cerAty1.NW_011999588v1 3988180 1 - 4483953 T i cerAty1.NW_011999588v1 N 0 C 0 s chlSab2.chr19 24614553 1 + 33263144 T i chlSab2.chr19 N 0 C 0 s manLeu1.NW_012102031v1 13885106 1 - 14338769 T i manLeu1.NW_012102031v1 N 0 C 0 s colAng1.NW_012115588v1 831409 1 + 1946073 T i colAng1.NW_012115588v1 N 0 C 0 s calJac3.chrUn_GL286373 1869862 1 - 2117846 T i calJac3.chrUn_GL286373 N 0 C 0 s saiBol1.JH378157 8789158 1 - 16357246 T i saiBol1.JH378157 N 0 C 0 s cebCap1.NW_016107750v1 1263965 1 - 1807191 T i cebCap1.NW_016107750v1 N 0 C 0 s micMur3.chr7 5621071 1 + 108171978 T i micMur3.chr7 N 0 C 0 s proCoq1.NW_012136747v1 4982239 1 - 6317780 T i proCoq1.NW_012136747v1 N 0 C 0 s otoGar3.GL873526 36235362 1 - 42659167 T i otoGar3.GL873526 N 0 C 0 a score=5840212.000000 s hg38.chr22_GL383582v2_alt 1 434 + 162811 GGCTACATGCGCCTGGTGGTACGCGAGTTGGAGAGCCAGTTGCAGGACGCACGCCAGAGCCTGGCTTTGCAACGCCGCTCATCCTGGAAGTCTGTTGCCAGCCGCTGTAAGCCCCAGGCTCCTAACCACCGAGCTGCGGGCCTGGAGAATGGCCACTGCCTCTCCAAGGACAGCAGCCCTGTGGGCTTGGTTGAAGAAGCGGGCAGCAGGTCTGCAGGGTGGGGGTTGGCTGAGTGGGAGCTGCAGGGCCCTGCCAGCCTCCTCCTAGGCAAGGGGCAGAGCCCTGTGTCCCCTGAGACCTCCTGCTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATCGTGGAGCTGCGGCAGTGTTGGCAGAAGAGGGCCC-AGGGGAGCCACTCAAAATGTGAG---------GAACAGGATAGGCCCTAAGTCTGGGCCCTTTGAGT-------------------- s panTro5.chr22 28753163 434 + 37823149 GGCTACATGCGCCTGGTGGTACGCGAGTTGGAGAGCCAGTTGCAGGACGCACGCCAGAGCCTGGCTTTGCAACGCCGCTCATCCCGGAAGTCTGTTGCCAGCCGCTGTAAGCCCCAGGCTCCTAACCACGGAGCTGCGGGCCTGGAGAATGGCCACTGCCTATCCAAGGACAGCAGCCCTGTGGGCTTGGTTGAAGAAGCGGCCAGCAGGTCTGCAGGGTGGGGGTTGGCTGAGTGGGAGCTGCAGGGCCCTGCCAGCCTCCTCCTAGGCAGGGGGCAGAGCCCTGTGTCCCCTGAGACCTCCTGCTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATCGTGGAGCTGCGGCAGTGTTGGCAGAAGAGGGCCC-AGGGGAGCCACTCAAAATGTGAG---------GAACAGGATAGGCCCTAAGTCTGGGCCCTCTGAGT-------------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41055318 434 + 50109623 GGCTACATGCGCCTGGTGGTACGCGAGTTGGAGAGCCAGTTGCAGGACGCACGCCAGAGCCTGGCTTTGCAACGCCGCTCATCCCGGAAGTCTGTTGCCAGCCGCTGTAAGCCCCAGGCTCCTAACCACGGAGCTGCGGGCCTGGAGAATGGCCACTGCCTATCCAAGGACAGCAGCCCTGTGGGCTTGGTTGAAGAAGCGGCCAGCAGGTCTGCAGGGTGGGGGTTGGCTGAGTGGGAGCTGCAGGGCCCTGCCAGCCTCCTCCTAGGCAGGGGGCAGAGCCCTGTGTCCCCTGAGACCTCCTGCTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATCGTGGAGCTGCGGCAGTGTTGGCAGAAGAGGGCCC-AGGGGAGCCACTCAAAATGTGAG---------GAACAGGATAGGCCCTAAGTCTGGGCCCTTTGAGT-------------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3030225 433 + 4464012 GGCTACATGCGCCTGGTGGTACGCGAGTTGGAGAGCCAGTTGCAGGACGCACGCCAGAGCCTGGCTTTGCAACGCCGCTCATCCTGGAAGTCTGTTGCCAGCCGCTGTAAGCCCCAGGCTCCTAACCACCGAGCTGCGGGCCTGCAGAATGGCCACTGCCTCTCCAAGGACAGCAGCCCTGTGGGCTTGGTTGAAGAAGCGGGCAGCAGGTCTGCAGGGTGGGGGTTGGCTGAGTGGGAGCTGCAGGGCCCTGCCAGCCTCCTCCTAGGCAGGGGGCAGAGCCCTGTGT-CCCTGAGACCTCCTGCTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATCGTGGAGCTGCGGCAGTGTTGGCAGAAGAGGGCCC-AGGGGAGCCAGTCAAAATGTGAG---------GAACAGGATAGGCCCTAAGTCTGGGCCCTTTGAGT-------------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106560077 430 - 115148730 GGCTACATGCGCCTGGTGGTACGCGAGTTGGAGAGCCAGTTGCAGGACGCATGCCAGAGCTTGGCTTTGCAACGCCACTCATCGTGGAAGTCTGTTGCCAGCCGCTGTAAGCCACAGGCTCCTAACCACCGATCTGCGGGCCTGGAGAATGGCCACTCCTTCTCCAAGGACAGCAGCCCTGTGGGCTTGGTTGAAGAAGCGGGCAGCATGTCTGCAGGGC-AGGGTTGGCTGAGT-GGAGCTGCAGGGCCCTGCCAGCCTCCTCCTAGGCA-GGGGCAGAGCCCCGTGTCCCCTGAGACCT-CTGCTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATCGTGGAGCTGCGGCAGTGTTGGCAGCAGAGGGCCC-AGGGGAGCCAGCCAAAACGTGAG---------GAACAGGATAGGCCCTAAGTCTGGGCCCTTTGAGT-------------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84182665 434 + 92844088 GGCTACATGCGCCTGGTGGTACGTGAGTTGGAGAGCCAGTTGCAGGACGCACGCCAGAGCCTGGCTTTGCAACGCCGCTCATCCTGGAAGTCTGTTGCCAGCCGCTGTAAGCCCCAGGCTCCTAACCACCGATCTGTGGGCCTGGAGAATGGCCACTCCCTCTCCAAGGACAGCAGCCCCGTGGGCTTGGTTGAAGAAGGGGGCAGCAGGTCTTCAGGGCGGGGGTTGGCTGAGTGGGAGCTGCAGGGCCCTGCCAGCCTCCTCCTAGGCAGGGGGCAGAGCCCTGTGTCCCCTGAGACCTCCTGCTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATCATGGAGCTGCGGCAGTGTTGGCAGCAGAGGGCCC-AGAGGAGCCAGCCAAAATGTGAG---------GAACAGGATAAGCCCTAAGTCTGGACCCTTTGAGT-------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87527513 434 - 96509753 GGCTACATGCGCCTGGTGGTACGTGAGTTGGAGAGCCAGTTGCAGGACGCACGCCAGAGCCTGGCTTTGCAACGCCGCTCATCCTGGAAGTCTGTTGCCAGCCGCTGTAAGCCCCAGGCTCCTAACCACCGATCTGTGGGACTGGAGAATGGCCACTCCCTCTCCAAGGACAGCAGCCCCGTGGGCTTGGTTGAAGAAGGGGGCAGCAGGTCTTCAGGGCGGGGGTTGGCTGAGTGGGAGCTGCAGGGCCCTGCCAGCCTCCTCCTAGGCAGGGGGCAGAGCCCTGTGTCCCCTGAGACCTCCTGCTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATAATGGAGCTGCGGCAGTGTTGGCAGCAGAGGGCCC-AGAGGAGCCAGCCAAAATGTGAG---------GAACAGGATAAGCCCTAAGTCTGGACCCTTTGAGT-------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7016294 434 - 13098629 GGCTACATGCGCCTGGTGGTACGTGAGTTGGAGAGCCAGTTGCAGGACGCACGCCAGAGCCTGGCTTTGCAACGCCGCTCATCCTGGAAGTCTGTTGCCAGCCGCTGTAAGCCCCAGGCTCCTAACCACCGATCTGTGGGCCTGGAGAATGGCCACTCCCTCTCCAAGGACAGCAGCCCCGTGGGCTTGGTTGAAGAAGGGGGCAGCAGGTCTTCAGGGCGGGGGTTGGCTGAGTGGGAGCTGCAGGGCCCTGCCAGCCTCCTCCTAGGCAGGGGGCAGAGCCCTGTGTCCCCTGAGACCTCCTGCTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATCATGGAGCTGCGGCAGTGTTGGCAGCAGAGGGCCC-AGAGGAGCCAGCCAAAATGTGAG---------GAACAGGATAAGCCCTAAGTCTGGACCCTTTGAGT-------------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3988181 434 - 4483953 GGCTACATGCGCCTGGTGGTACGTGAGTTGGAGAGCCAGTTGCAGGACGCACGCCAGAGCCTGGCTTTGCAACGCCGCTCATCCTGGAAGTCTGTTGCCGGCCGCTGTAAGCCCCAGGCTCCTAACCACCGATCTGTGGGCCTGGAGAATGGCCACTCCCTCTCCAAGGACAGCAGTCCTGTGGGCTTGGTTGAAGAAGGGGGCAGCAGGTCTTCAGGGTGGGGGTTGGCTGAGTGGGAGCTGCAGGGCCCTGCCAGCCTCCTCCTAGGCAGGGGGCAGAGCCCTGTGTCCCCTGAGACCTCCTGCTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATCATGGAGCTGCGGCAGTGTTGGCAGCAGAGGGCCC-AGAGGAGCCAGCCAAAATGTGAG---------GAACAGGATAAGCCCTAAGTCTGGACCCTTTGAGT-------------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24614554 434 + 33263144 GGCTACATGCGCCTGGTGGTACGTGAGTTGGAGAGCCAGTTGCAGGACGCACGCCAGAGCCTGGCTTTGCAACGCCGCTCATCCTGGAAGTCTGTTGCCGGCCGCTGTAAGCCCCAGGCTCCTAACCACCAATCTGTGGGCCTGGAGAATGGCCACTCCCTCTCCAAGGACAGCAGCCCCGTGGGCTTGGTTGAAGAAGGGGGCAGCAGGTCTTCAGGGCGGGGGTTGGCTGAGTGGGAGCTGCAGGGCCCTGCCAGCCTCCTCCTAGGCAGGGGGCAGAGCCCTGTGTCCCCTGAGACCTCCTGCTTCTCTACCCTCCATGACTGGTATGGCCAGGAGATCATGGAGCTGCGGCAGTGTTGGCAGCAGCGGGCCC-AGAGGAGCCAGCCAAAATGTGAG---------GAACAGGATAAGCCCTAAGTCTGGACCCTTTGAGT-------------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13885107 434 - 14338769 GGCTACATGCGCCTGGTGGTACGTGAGTTGGAGAGCCAGTTGCAGAACGCACGCCAGAGCCTGGCTTTGCAACGCCGCTCATCCTGGAAGTCTGTTGCCGGCCGCTGTAAGCCCCAGGCTCCTAACCACCGATCTATGGGCCTGGAGAATGGCCACTCCCTCTCCAAGGACAGCAGCCCCGTGGGCTTGGTTGAAGAAGGGGGCAGCAGGTCTTCAGGGTGGGGGTTGGCTGAGTGGGAGCTGCAGGGCCCTGCCAGCCTCCTCCTAGGCAGGGGGCAGAGCCCTGTGTCCCCTGAGACCTCCTGCTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATCATGGAGCTGCGGCAGTGTTGGCAGCAGAGGGCCC-AGAGGAGCCAGCCAAAATGTGAG---------GAACAGGATAAGCCCTAAGTCTGGACCCTTTGAGT-------------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 831410 434 + 1946073 GGCTACATGCGCCTGGTGGTACGTGAGTTGGAGAGCCAGTTGCAGGACGCACGCCAGAGCCTGGCTTTGCAACGCCGCTCATCCTGGAAGTCTGTTGCCAGTCGCTGTAAGCCCCAGGCTCCTAACCACCGATCTGCGGACCTGGAGAATGGCCACTCCATCTCCAAGGACAGCAGCCCCGTGGGCTTGGTTGAAGAAGCGGGCAGCAGGTCTTCAGGGCGGGGGTTGGCTGAGTGGGAGCTGCAGGGCCCTGCCAGCCTTCTCCTAGGCAGGGGGCAGAGCCCTGTGTCCCCTGAGACCTCCTGCTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATCGTGGAGCTGCGGCAGTGTTGGCAGCAGAGGGCCC-AGAGGAGCCAGCCAAAATGTGAG---------GAACAGGACAAGCCCTAAGTCTGGACCCTTTGAGT-------------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1869863 434 - 2117846 GGCTACATGCGCCTGGTGGTACGAGAGTTGGAGAGCCAGTTGCAGGACGCACGCCAGAGCCTGGCTTTGCAACACCACTCATCCTGGAAGCCCACTGCCAGCTGCTGTAAGCCCCAGGCTCGTAACAACCGGTCTGTGGTCCTAGAGAATGGCCACCCCCTCTCCAAGGACTGCAGCCCTGTGGGCTTGGTTGAAGAAGCAGGCAGCAGGTGTGCAGGACTGGGGTTGGCTGAGCGGGAGCTACAGGGCCCTGCTAGCCTCCTTCTCGGCAGGGGGCAGAGTCCTGTGTCCCCTGAGACCTCCAATTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATCATGAAACTGCAGCAGCATTGGCAGCAGAGGGCCC-AGGGGAGACAGCCAGAATGTGAG---------GAACAGGATAAGCCCTAAGCCCGGGCACTGTGATT-------------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8789159 434 - 16357246 GGCTATATGCGCCTGGTGGTACGAGAGTTGGAGAGCCAGTTGCAGGACGCACGCCAGAGCCTGGCTTTGCAACATCACTCATCCTGGAAGCCCGCTGCCAGCCGCTGTAAGCTCCAGGCTCGTAACAACCGGTCTGTGGTCCTGGAGAATGGCCACTCCTTCTCCAATGACTGCAGCCCTGTGGGCTTGGTTGAAGAAGCGGGTAGCAGGTCTGCAGGACTGGGGTTGGCTGAGCGGGAGCTACAGGGCCCTGCCAGCCTCCTCTTAGGCAGGGGGCAGAGTCCTGTGTCCCCTGAGACCTCCAATTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATCATGAAGCTGCAGCAGCATTGGCGGCAGAGGGCCC-AGGGGAGCCAGCCAGAATGTGAG---------GAACAGGAAAAGCCCTAAGGCTGGGCACTGTGATT-------------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1263966 434 - 1807191 GGCTACATGCGCCTGGTGGTACGAGAGCTGGAGAGCCAGTTGCAGGACGCACGCCAGAGCCTGGCTTTGCAACACCACTCATCCTGGAAGCCCGCTGCCAGCCGCTGTAAGCCCCAGGCTCGTAACAACCGGTCTGTGGTCCTGGAGAATGGCCACCCCCTCTCCAAGGACTGCAGCCCTGTGGGCTTGGTTGAAGAAGCGGGCAGCAGGTCTGCAGGACTGGGGTTGGCTGAGCGGGAGCTACAGGGTCCTGCCAGCCTCCTCCTAGGCAGGGGGCAGAGTCCCGTGTCCCCTGAGACCTCCGATTTCTCTACCCTGCATGACTGGTATGGCCAGGAGATCATGAAGCTGCAGCAGCATTGGCAGCAGAGGGCCC-AGGGGACCCAGCCAGAATGTGAG---------GAACAGGATAAGCCCTAAGCCTGGGCACTGTGATT-------------------- i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5621072 434 + 108171978 GGCTACATGCGCCTGGTGGTACGAGAGCTGGAGAGCCAATTGCAGGACGCCCGCCAGAGCCTAGCTTTGCATCGCCACTCATCCTGGAAGGCCATTTCCAGCCGCTGTAAGCCCCAGGCTCCTGACTGTTGGTCTCTGGGCCTGGAGAATGGCCACTCCCTCCCCAGAGACTGCAGCCCCATGGGCTTAGTTGAAGAAGGCAGCAGCAGGTCAGCAGGGCGAGGGTTGGCTGAGTGGGAGTTGCAGGGCCCTGCCAGCCTCCTCCTAGGCAGGAAGCAGAGCCCTGTATCCCCTGAGACCTCCTGCTTCTCCACCCTCCACAACTGGTATGGCCAGGAGATTGTGGAGTTGCGGCGGGGGTGGCAGCAGAGGGCCC-GGGGGAGCAAGGCAGGATGTGAG---------GAACAGGTTAGGCTCTGATGCTGGGCCCTTTGAGT-------------------- i micMur3.chr7 C 0 I 393 s proCoq1.NW_012136747v1 4982240 429 - 6317780 GGCTACATGCGCCTGGTGGTACGAGAGCTGGAGAGCCAGTTGCAGGACGCCCGCCAGAGCCTAGCCTTGCATCGCCACTCATCCTGGAAGGCCATTTCCAGCCGCTGTAAGCCCCAGGCTCCTGACTGTTGGTCTCCAGGCCTGGAGAAGGGCCACTCCCTCCCCAGAGACTGCAGCCCCATGGCTTTAGTTGAAGGGGGCAGCAG------GTCAGGGCGAGGGTTGGCTGAGTGGGAGTTGCAGGGCCCTGCCAGCCTCCTCCTAGGCAGGGGGCAGAGCCCCGTGTCCCCTGAGACCTCTTGCTTCTCCACCCTGCACAACTGGTATGGCCAGGAAATTGTGGAGCTGCGGCGGGGGTGGCAGCAGAGGGCCCGGGGGGAGCCAGGCAGGATGTGAG---------GAACAGGTTAGGCCCTGAGCCTGGGCCTTTTGAGT-------------------- i proCoq1.NW_012136747v1 C 0 I 20 s otoGar3.GL873526 36235363 443 - 42659167 GGCTATATGCGCCTGGTGGTACGGGAGCTGGAGAGCCAGTTGCAGGAAGCCCGCCGGAGCCTGGCCTTGCAACGACACTCATCCTGCAAGGCTGTTGCTAACCGCTGTAAGCCCCAGGCTCTTGACTATTGGTCTCTGGGCCTGGAGAACGGCCACTCCCTTCCCAGAGACTATAGCCCTGTGGGCTTAGGTGAAGAAGGGGGCAGTAGGTGGGCAGGGCGAGCGTTGGCAGAGGGGGTGTTGCAGGGCCCTGCCAACCTCCTCTTAGGCAGTGGGCAGAGCCCTGTGTCCCCTGAGACCTCCTGCTTTTCCACCCTGCATGAGTGGTATGGCCAGGAGATTGTGGCACTACGGCGGAGATGGCAGCAGAGGACCC-AGGGAAGCCAGGCAGAATATGGGGAACAAGCAGAACAGGATAGGTCCTAAACCTGGGCCCTTCTAGT-------------------- i otoGar3.GL873526 C 0 I 20 s canFam3.chr10 46032145 448 - 69331447 GGCTACATGCGCCTGGTGGTGCGCGAGCTGGAGAGCCAACTGCGCGACGCCCGCCACAGCCTGGCCTTGCGTCGCCACTCATCCTGGAAGGCTGGTCCCGGCCACCAAAAGCCCCAGGCTCCTGAGCGCCCGTCTCCGGGCCCAGAAAACGGCCACCCCGTCTCCAAGGATTGCCGGCCCGAGGACCTGGTTGAAGAAAGGGGCAGCAGGCCAGCCGGCCGGGGCTTGGCCGAGTGG------CAGGGCCCTGCCGGCCTCTTCCTGGGCAGGCGGCAGAGCCCCTCGCTCCCCGAGACCTCCTACTTCTCGATGCTGCACAACTGGTACGGCCAGGAGATCGTGGAGCTGAGGCAGAGGTGGCTGCAGAGGGCCT-GGGCCAGCCGGCTGGAGCGCGAG---------AATCGGGATGGGCACTGAGCCCCGGTCCGGCGGGCATGGCCCTTATCCTGCCGGT i canFam3.chr10 N 0 C 0 a score=2135706.000000 s hg38.chr22_GL383582v2_alt 435 189 + 162811 CAGGAAACCAGGGCCAGTTCTTTTTC------------AGGAGTTAAATG--TTTACCCATTTCCAAG--------GTTGCGTTTTGGGAGGGGACATGGGTTCTCTCCTTCCTGCTATTTAGGCATTCTCCAGGTTCGAGATCCACCCGTGTGTctggaagggactgcgggaccattccttccatcc-tctttatttcctgaggtccagag s panTro5.chr22 28753597 189 + 37823149 CAGGAAACCAGGGCCAGTTCTTTTTC------------AGGAGTTAAATG--TTTACCCATTTCCAAG--------GTTGCGTTTTGGGAAGGGACATGGGTTCTCTCCTTCCTGCTATTTAGGCATTCTCCAGGTTCGAGATCCACCCGTGTGTctggaagggactgagggaccattccttccatcc-tctttatttcctgaggtccagag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41055752 186 + 50109623 CAGGAAACCAGGGCCAGTTCTTTTTC------------AGGAGTTAAATG--TTTACCCATTTCCAAG--------GTTGCGTTTTGGGAAGGGACATGGGTTCTCTCCTTCCTGCTATTTAGGCATTCTCCAGGTTCGAGATCCACCCGTGTGTctggaagggactgagggaccattccttccatcc-tc---atttcctgaggtccagag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3030658 188 + 4464012 CAGGAAACCAGGGCCAGTTCTTTTTC------------AGGAGTTAAATG--TTTACCCATTTCCAAG--------GTTGCGTTTTGGGAGGGGACATGGGTTCTCTCCTTCCTGCTATTTAGGCATTCTCCAGGTTCCAGATCCA-CCGTGTGTctggaagggactgagggaccattccttccatcc-tctttatttcctgaggtccagag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106560507 186 - 115148730 CAGGAAACCAGGGCCAGTTCTTTTTC------------AGGAGTTAAATG--TTTACCCATTTCCAAG--------GTTGCGTTTTGAAAGAGGACATGGGTTCTCTTCTTCCTGCTGTTTAGGCATTCTCCAGGTTCCAGATCCACCCATGTGTctagaagggactgagggaccattccttccatcc-tctttatttcctgaggtcca--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84183099 189 + 92844088 CAGGAAACCAGGGCCAGTTCTTTTTT------------AGGAGTTAAATG--TTTACCCATTTCCAAC--------GTTGTGTTTTGGGAGGGGACATGGGTTCTCTCCTTCCTGCTATTTAGGCATTCTCCAGATTCCAGATCCACCCGTGTGTctggaagggactgagggaccattccttccatcc-tctttatttcctgaggtccacag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87527947 189 - 96509753 CAGGAAACCAGGGCCAGTTCTTTTTT------------AGGAGTTAAATG--TTTACCCATTTCCAAC--------GTTGTGTTTTGGGAGGGGACATGGGTTCTCTCCTTCCTGCTATTTAGGCATTCTCCAGATTCCAGATCCACCCGTGTGTctggaagggactgagggaccattccttccatcc-tctttatttcctgaggtccacag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7016728 189 - 13098629 CAGGAAACCAGGGCCAGTTCTTTTTT------------AGGAGTTAAATG--TTTACCCATTTCCAAC--------GTTGTGTTTTGGGAGGGGACATGGGTTCTCTCCTTCCTGCTATTTAGGCATTCTCCAGATTCCAGATCCACCCGTGTGTctggaagggactgagggaccattccttccatcc-tctttatttcctgaggtccacag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3988615 189 - 4483953 CAGGAAACCAGGGCCAGTTCTTTTTC------------AGGAGTTAAATG--TTTACCCATTTCCAAC--------GTTGTGTTTTGGGAGGGGACATGGGTTCTCTCCTTCCTGCTATTTAGGCATTCTCCAGATTCCAGATCCACCCGTGTGTctggaagggactgagggaccattccttccatcc-tctttatttcctgaggtccagag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24614988 189 + 33263144 CAGGAAACCAGGGCCAGTTCTTTTTC------------AGGAGTTAAATG--TTTACCCATTTCCAAT--------GTTGTGTTTTGGGAGGGGACACGGGTTCTCTCCTTCCTGCTATTTAGGCATTCTCCAGATTCCAGATCCACCCGTGTGTctggaagggactgagggaccattccttccatcc-tctttatttcctgaggtccagag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13885541 189 - 14338769 CAGGAAACCAGGGCCAGTTCTTTTTC------------AGGAGTTAAATG--TTTACCCATTTCCAAC--------GTTGTGTTTTGGGAGGGGACATGGGTTCTCTCCTTCCTGCTATTTAGGCATTCTCCAGATTCCAGATCCACCCGTGTGTctggaagggactgagggaccattccttccatcc-tctttatttcctgaggtccagag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 831844 189 + 1946073 CAGGAAACCAGGGCCAGTTCTTTTTC------------AGGAGTTAAATG--TTTACCCATTTCCAAC--------GCTGTGTTTTGGGAGGGGACATGGGTTCTCTCCTTCCTGCTATTTAGGCATTCTCCAGATTCCAGATCCACCCATGTGTctggaagggactgagggaccattccttccatcc-tctttatttcctgaggtccagag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1870297 189 - 2117846 CAGGAAGCCAGTGCCAGTTCTTTTCC------------AGGAGCTAAATG--TTTACCCATTTCCAAG--------GTTGCATTTTGGGAGGTGACATGGGTTCTCTTCTTCCTACTATTTAGGCATTCTCCAGGTTCCAGATCTACCCGTGTGTctggaagggactgagggaccattccttccatcc-tttttatttcctgaggcccaggg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8789593 190 - 16357246 CAGGAAACCAGGGCCAGTTCTTTTTC------------AGGAGTTAAATG--TTTACCCATTTCCAAG--------GCTGCATTTTGGGAGGTGACGTGGGTTCTCTCCTTCCTGCTATTTAGGCATTCTCCAGGTTCCAGATCCACCTGTGTGTCTGGAAGGGACTGAGGGACCATTCCTGCCATCCTTTTTTATTTCCTGAGGCCCGGAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1264400 189 - 1807191 CTGGAAACCAGGGCCAGTTCTTTTTC------------AGGAGTTAAATG--TTTACCCATTTCCAAG--------GTTGCATTTTGGGAGGTGACATGGGTTCTCTCCTTCCTGCTATTTAGGCATTCTCCAGGTTCCAGATCCACCCGTGTGTctggaagggactgagggaccattccttccaacc-tttttatttcctgaggcccagag i cebCap1.NW_016107750v1 C 0 I 41 s proCoq1.NW_012136747v1 4982689 191 - 6317780 CAGGACACCAGGGCCGGCGTTTTTTCAGCCCAATCTGAAAAAGTTAAATG--TTAACTCATTTCCAAA--------TTTGCTTTTGGGGA----------GTGTTTCTCTCCTTGCTTTTTAGGCATTCTCCAGGTTCCAGATCCAAACTTGTACctggaggggactgaggaatcatcacaaccatcc-tctttattttctgagacacagag i proCoq1.NW_012136747v1 I 20 C 0 s otoGar3.GL873526 36235826 172 - 42659167 CAGGACACCAGGGCCAGTGCTTTTTC------------TAGAGTTAAATG--TTTACTCATTTCCAAG--------GTTGCTTTTGGGG-----------GTGTTTCTTTCCATGTATTTTAGGGAATCTCCAGGTTCTAGACCCAACCTTGTACCTGGAGGGGACTGAGGAATCATGACTTTCATCC-TC----TTTCctgag--acagag i otoGar3.GL873526 I 20 C 0 s canFam3.chr10 46032593 190 - 69331447 CAGGACACTAGGGCCAGGGCTTTTTC------------CAGATTTTAATGAATGTTTTTTTTTTTAAGTGACTTTTTTTTTTTTTTGAGAGG--------ATTCTTTCTTTCCTGTTTTTTAGGC-TTCCCCAGGTTCCAGAGCTACCCTCGTGCctggaggggactgaggagtcattactcccaact-cctttatttcctgaggcccaggg i canFam3.chr10 C 0 C 0 e micMur3.chr7 5621506 393 + 108171978 I a score=242448.000000 s hg38.chr22_GL383582v2_alt 624 39 + 162811 aaggaaggagactt----agcagccacagagcaagACCCCAAT s panTro5.chr22 28753786 39 + 37823149 aaggaaggagactt----agcagccacagagcaagACCCCAAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41055938 39 + 50109623 aaggaaggagactt----agcagccacagagcaagACCCCAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3030846 39 + 4464012 aaggaaggagactt----agcagccacagagcaagACCCCAAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106560693 32 - 115148730 -------gagaCTT----AGCAGCCACAGAGGAAGACCCCAAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84183288 39 + 92844088 aggaaaggagactt----agacaccacagagcaagACCCCTAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87528136 39 - 96509753 aggaaaggagactt----agacaccacagagcaagACCCCTAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7016917 39 - 13098629 aggaaaggagactt----agacaccacagagcaagACCCCTAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3988804 39 - 4483953 aggaaaggagactt----agacgccacagagcaagACCCCAAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24615177 39 + 33263144 aggaaaggagactt----agacgccacagagcaagACCCCAAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13885730 39 - 14338769 agtaaaggagactt----agacgccacagagcaagACCCCAAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 832033 39 + 1946073 aggaaaggagactt----ggacgccacagagcaagACCCCAAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1870486 41 - 2117846 -aggaaaggggcttgatcaGCTGCCACTGCGCCCGGCCGAAA- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8789783 41 - 16357246 -AGGAAAGGGGCTTGATCAGCTGCCACTGCACCCGGTCCAAA- i saiBol1.JH378157 C 0 C 0 s proCoq1.NW_012136747v1 4982880 42 - 6317780 aggaaaggtggcttgctcaga-gccacggagcaagacccaggt i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36235998 42 - 42659167 aggataggtagcttgctcaga-gtcacagagcaagAGCCAAGT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46032783 42 - 69331447 agggggagggccttgctcagcagccccatggccagACTCAGC- i canFam3.chr10 C 0 C 0 e micMur3.chr7 5621506 393 + 108171978 I e cebCap1.NW_016107750v1 1264589 41 - 1807191 I a score=786023.000000 s hg38.chr22_GL383582v2_alt 663 75 + 162811 CTCC----------------------------------------------------------------------------------------TGACTGCACTG-GCCTGACTGCCCCCT-CCCAGGGGATGTTAATGAAATGAAGGAAGTGGGGAATGTCACCCG s panTro5.chr22 28753825 75 + 37823149 CTCC----------------------------------------------------------------------------------------TGACTGCACTG-GCCTGCCTGCCCCCT-CCCAGGGGATGTTAATGAAATGAAGGAAGTGGGGAATGTCACCCG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41055977 75 + 50109623 CTCC----------------------------------------------------------------------------------------TGACTGCACTG-GCCTGCCTGCCCCCT-CCCAGGGGATGTTAATGAAATGAAGGAAGTGGGGAATGTCACCCG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3030885 75 + 4464012 CTCC----------------------------------------------------------------------------------------TGACTGCACTG-GCCTGACTGCCCCCT-CCCAGGGGATGTTAATGAAATGAAGGAAGTGGGGAATGTCACCCG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106560725 77 - 115148730 CTCCTG--------------------------------------------------------------------------------------TGACTGCACTG-GCCTGACTGCCCCCT-CCCAAGGGATGTTAATGAAATGAAGGAAGTGGGAAATGTCACCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84183327 75 + 92844088 CTCC----------------------------------------------------------------------------------------TGACTGCACTG-GCCTGACTGGCCCCT-CCCAGGGGATGTTAATGAAATGAAGGAAGTGGGAAATGTCACCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87528175 75 - 96509753 CTCC----------------------------------------------------------------------------------------TGACTGCACTG-GCCTGACTGGCCCCT-CCCAGGGGATGTTAATGAAATGAAGGAAGTGGGAAATGTCACCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7016956 75 - 13098629 CTCC----------------------------------------------------------------------------------------TGACTGCACTG-GCCTGACTGGCCCCT-CCCAGGGGATGTTAATGAAATGAAGGAAGTGGGAAATGTCACCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3988843 75 - 4483953 CTCC----------------------------------------------------------------------------------------TGACTGCACTG-GCCTGACTGGCCCCT-CCCAGGGGATGTTAATGAAATGAAGGAAGTGGGAAATGTCACCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24615216 75 + 33263144 CTCC----------------------------------------------------------------------------------------TGACTGCACTG-GCTTGACTGGCCCCT-CCCAGGGGATGTTAATGAAATGAAGGAAGTGGGAAATGTCACCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13885769 75 - 14338769 CTCC----------------------------------------------------------------------------------------TGACTGCACTG-GCCTGACTGGCCCCT-CCCAGGGGATGTTAATGAAATGAAGGAAGTGGGAAATGTCACCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 832072 75 + 1946073 CTCC----------------------------------------------------------------------------------------TGACTTCACTG-GCCTGACTGGCCCCT-CCCAGGGGATGTTAACGAAATGAAGGAAGTGGGAAATGTCACCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1870527 74 - 2117846 CTCC----------------------------------------------------------------------------------------TGACTGCACTG-GCCTGACTGCCCCA--CCCAGGGGATATTGATGAAATGGAGGAAGTGGGCAATGTCACCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8789824 75 - 16357246 CTCC----------------------------------------------------------------------------------------TGACTGCACTG-GCCTGACTGCCCCCT-CCCAGGGGATATTAATGAAATGCAGGAAGTGGGCAATGTCACCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1264630 75 - 1807191 CTCC----------------------------------------------------------------------------------------TGACTGCACTG-GCCTGACTGCCCCCT-CCCAGGGGATATTAATGAAATGGAGGAAGTGGGCAATGTCACCTG i cebCap1.NW_016107750v1 I 41 C 0 s proCoq1.NW_012136747v1 4982922 72 - 6317780 ctcc----------------------------------------------------------------------------------------tgactGTCGTG-----GACTGCCCCTCTCTTAGGGGATGTTAATGAAACGGAAGAAGTGGGAACTGTTGCATG i proCoq1.NW_012136747v1 C 0 I 14 s otoGar3.GL873526 36236040 156 - 42659167 CTCCggtgccagccccacatactgggggtggcaggttcgaacccgatcacggccaaaaactgcaaaaaaaaaaAAAAAAAATCCGAGTCTCTTGACTATGCTG-----GACTGCCCCTC-CTTGGGGGATGTCACTGAAATAGAGGAAGTGGGAGCTGTTAC--- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46032825 71 - 69331447 CTCC----------------------------------------------------------------------------------------TCCCT---CTGTGCTCGGC--CCCTCT-CTCAGGGGATGCTAATGAAATGGAGGAAGTGGGAAATATTACGTG i canFam3.chr10 C 0 C 0 e micMur3.chr7 5621506 393 + 108171978 I a score=146875.000000 s hg38.chr22_GL383582v2_alt 738 20 + 162811 AG------ACTGTCACAGGCTTGCCA s panTro5.chr22 28753900 20 + 37823149 AG------ACTGTCACAGGCTTGCCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41056052 20 + 50109623 AG------ACTGTCACAGGCTTGCCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3030960 20 + 4464012 AG------ACTGTCACAGGCTTGCCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106560802 20 - 115148730 AG------AGTGTCACAGGCTTGCCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84183402 20 + 92844088 AG------AGTGTCACAGACTTGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87528250 20 - 96509753 AG------AGTGTCACAGATTTGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7017031 20 - 13098629 AG------AGTGTCACAGATTTGCCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3988918 20 - 4483953 AG------AGTGTCACAGGCTTGCCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24615291 20 + 33263144 AG------AGTGTCACAGGCTTGCCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13885844 20 - 14338769 AG------AGTGTCACAGGCTTGCCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 832147 20 + 1946073 AG------AGTGTCACAGGCTTGCCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1870601 26 - 2117846 AGAGTGTCAGTGTCACAGGCTTTCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8789899 20 - 16357246 AG------AGTGTCACAGGCTTGCCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1264705 20 - 1807191 AG------AGTGTCACAGGCTTGCCC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36236196 17 - 42659167 --------ATCGCCATGGGTTGTTT- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46032896 14 - 69331447 -----------GCCGTAGGCTGCCG- i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4982994 14 - 6317780 I e micMur3.chr7 5621506 393 + 108171978 I a score=1020607.000000 s hg38.chr22_GL383582v2_alt 758 101 + 162811 -TACCTTTGGCCTACACACCGGGCTCTAGAGCCATAATTTCCAACCTGGGGAGTCTCCTGTGCACTTAAATCC--GAGGTAGGCTGCAGTATCGGCTTGAAGCT s panTro5.chr22 28753920 101 + 37823149 -TACCTTTGACCTACACACCGGGCTCTAGAGCCATAATTTCCAACCTGGGGAGTCTCCTGTGCACTTAAATCC--GAGGTAAGCTGCAGTATCGGCTTGAAGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41056072 101 + 50109623 -TACCTTTGACCTACACACCGGGCTCTAGAGCCATAATTTCCAACCTGGGGAGTCTCCTGTGCACTTAAATCC--GAGGTAAGCTGCAGTATCGGCTTGAAGCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3030980 101 + 4464012 -TACCTTTGACCTACACACCGGGCTCTAGAGCCATAATTTCCAACCTGGGGAGTCTCCTGTGCACTTAAATCC--GAGGTAGGCTGCAGTATTGGCTTGAAGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106560822 101 - 115148730 -TAGCTTTGACCTACACACCAGGCTCTAGAGCCATAATTTCCCACCTGGGGAGTCTCGTGTGCATTTAAATTC--GAGGTAGGCTGCAGTATGGCCTTGAGGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84183422 101 + 92844088 -TACCTTTGACCTATACACCAGGCTCTGGAGCCATAATTTCCAACCTGGGGAGTCTCGTGTGCATTTAAATCC--GAGGTAGGCTGCAGTATTGGCTTGAGGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87528270 101 - 96509753 -TACCTTTGACCTATACACCAGGCTCTGGAGCCATAATTTCCAACCTGGGGAGTCTCGTGTGCATTTAAATCC--GAGGTAGGCTGCAGTATTGGCTTGAGGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7017051 101 - 13098629 -TACCTTTGACCTATACACCAGGCTCTGGAGCCATAATTTCCAACCTGGGGAGTCTCGTGTGCATTTAAATCC--GAGGTAGGCTGCAGTATTGGCTTGAGGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3988938 101 - 4483953 -TACCTTTGACCTATACACCAGGCTCTGGAGCCATAATTTCCAACCTGGGGAGTCTCGTGTGCATTTAAATCC--GAGGTAGGCTGCAGTATTGGCTTGAGGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24615311 101 + 33263144 -TACCTTTGACCTATACACCAGGCTCTGGAGCCATAATTTCCAACCTGGGGAGTCTCGTGTGCATTTAAATCC--GAGGTAGGCTGCAGTATTGGCTTGAGGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13885864 101 - 14338769 -TACCTTTGACCTATACACCAGGCTCTGGAGCCATAATTTCCAACCTGGGGAGTCTCATGTGCATTTAAATCC--GAGGTAGGCTGCAGTATTGGCTTAAGGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 832167 101 + 1946073 -TACCTTTGACCTATACACCAGGCTCTGGAGCCATAATTTCCAACCTGGGGAGTCTCGTGTGCATTTAAATCC--GAGGCAGGCTGCAGTATTGGCTTGAGGCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1870627 99 - 2117846 -CACCTTTGACCTACATGCCAGACTCTAGAGCCGTAAATTCCAACCTGGGGAGTCTCCTGTG--TTTAAATCC--GAGGTTGCCTGCACTATTGGCTTGAGACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8789919 101 - 16357246 -TACCTTTGACCTACACGCCGGACTCTAGAGCTGTAAACTCCAACCTGGGGAGTCTCGTGTGCATTTAAAGCC--AAGGTTGGCTGCAGTATTGGCTTGAGACT i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1264725 92 - 1807191 -TACCTTTGACCTATACGCCAGACTC---------AGATTCCAACCTGGGGAGTCTCATGTGCATTTAAATCC--GAGGTTGGCTGCAGTATTGGCTTGAGACT i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4983008 101 - 6317780 -TACCTTTGACCCACACACCAGATTCTATAGC-ACCGTTTCCAATGTGGGGAGTCTTGTGT-CATTTTAATACCAGAAGTTAGCTGTAGTATTGGCTTGAGGGG i proCoq1.NW_012136747v1 I 14 C 0 s otoGar3.GL873526 36236213 83 - 42659167 -TACCTTTG------ACAACAGATTCTATAGCTATCATTTCCAACATGGGGAATATTGTGT-CTTTTAAATACCAGAGGTTAGC-------------TGAGGGG i otoGar3.GL873526 C 0 I 1 s canFam3.chr10 46032910 104 - 69331447 TGCCCTGTTACCTACACGCCCGACTCTACAACCACAACTTCCTACACAGGGAGTCTTGTGTACCTTTAGATACCAGAAGTTGGGTGAAGTGTTAGTTCGAGGGA i canFam3.chr10 C 0 C 0 e micMur3.chr7 5621506 393 + 108171978 I a score=5086037.000000 s hg38.chr22_GL383582v2_alt 859 416 + 162811 CTGACACT----GTCAGAGAAAGTGGATTTATTGTGTCATAGGAGTTTCTGGGACCCAGCTCTTCCTGAGAGGGGTGGGAAGATTGGGGATGGGATCCTCACTCAGCAGTCTGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGAGGGTCTTCGGCCAGTGAAGAGAGATTTATTCTGCTCAGA--GTGCTGGG--GT-CCCATCCTTTCTCCCTGGCTGCCCTGTTAACAGATGGTGCTGGACCTTGCCCCGGAAGGGGCTTGTAGCTTTTTTACGTCAACGAAATGCCCTCCTG--------------------TACTCTGTCTTCAGCAGCCAACTCCTGGAGCTGCCAAGTGAGGGGTTAAAGAAGAGGTGGGGAGGCAGTGTGGCTCCCTGGGAAA----AGTCTGTTGCTTTGGTTCTCAGTCCTGGGTATTCTAGGAGCTTGGACACGGGATT s panTro5.chr22 28754021 410 + 37823149 CTGACACT----GTCAGAGAAAGTGGATTTATTGTGTCATAGGAGTTTCTGGGACCCAGCTCTTCCTGAGAGGGGTGGGAAGATTGGGGATGGGATCCTCACTCAGCAGTCTGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGAGGGTCTTCGGCCAGTGAAGAGAGATTTATTCTGCTCAGA--GTGCTGGG--GT-CCCATCCTTTCTCCCTGGCTGCCCTGTTAACAGATGGTGCTGGACCTTGCCCCGGAAGGGGCTTGTAGCTTTTTTACGTCAACGAAATGCCCTCCTG--------------------TACTCTGTCTTCAGCAGCCAACTCCTGGAGCT------TGAGGGGTTAAAGAAGAGGTGGGGAGGCAGTGTGGCTCCCTGGGGAA----AGTCTGTTGCTTTGGTTCTCAGTCCTGGGTATTCTAGGAGCTTGGACACGGGATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41056173 410 + 50109623 CTGACACT----GTCAGAGAAAGTGGATTTATTGTGTCATAGGAGTTTCTGGGACCCAGCTCTTCCTGAGAGGGGTGGGAAGATTGGGGATGGGATCCTCACTCAGCAGTCTGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGAGGGTCTTCGGCCAGTGAAGAGAGATTTATTCTGCTCAGA--GTGCTGGG--GT-CCCATCCTTTCTCCCTGGCTGCCCTGTTAACAGATGGTGCTGGACCTTGCCCCGGAAGGGGCTTGTAGCTTTTTTACGTCAACGAAATGCCCTCCTG--------------------TACTCTGTCTTCAGCAGCCAACTCCTGGAGCT------TGAGGGGTTAAAGAAGAGGTGGGGGGGCAGTGTGGCTCCCTGGGGAA----AGTCTGTTGCTTTGGTTCTCAGTCCTGGGTATTCTAGGAGCTTGGACACGGGATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3031081 415 + 4464012 CTGACACT----GTCAGAGAAAGTGGATTTATTGTGTCATAGGAGTTTCTGGGACCCAGCTCTTCCTGAGAGGGGTGGGAAGATTGGGGATGGGATCCTCACTCAGCAGTCTGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGAGGGTCTTCGGCCAGTGAAGAGAGATTTATTCTGCTCAGA--GTGCTGGG--GA-CCCATCCTTTCTCCCTGGCTGCCCTGTTAACAGATGGTGCTGGACCTTGCCCCGGAAGGGGCTTGTAGCTTTTTTACGTCAACGAGATGCCCTCCTG--------------------TACTCTGTCTTCAGCAGCCAACTCCTGGAGCT-CCAAGTGAGGGGTTAAAGAAGAGGTGGGGAGGCAGTGTGGCTCCCTGGGGAA----AGTCTGTTGCTTTGGTTCTCAGTCCTGGGTATTCTAGGAGCTTGGACACGGGATT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106560923 413 - 115148730 CTGCCATT----GTCAGAGAAAGTGGATTTATTGTGTCACAGCAGTTTCTGGGACCCAGCTCTTCCTGAG-GGGGTGGGAAGATTGGGGATGGGATCCTCACTCAGCAGTTTGGATAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGAGGATCTTCGGCCAGTGAAGAGAGATTTAGTCTGCTCAGA--GTGTTGGG--GT-CCCATCCTTTCTCCCTGGCTACCCTGTTAACAGATGATGCTGGACCTTGCCCCAGAAGGGGCTTGTAGCTTTTTTATGTCAACGAAATGGCCTCCTG--------------------TACTCTGTCTTCAGCAGCCAGCTCCTGGAGCTGCCAAGTGAGGGGTTAAAGAAGAGGTGGTGAGGCAGTGTGGCTCCCTGGGGAA------TTTGTTGCTTTGGTTCTCAGTCCTGGGTATTCTAGGAGCTTGGGCACGGGATT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84183523 407 + 92844088 CTGACACT----GTCAGAGAAAGTGGATTTATTGTGTCACAGGAGTTTCTGGGACCCAGCTCTTCCTGAGAGGGGTGGGAAGATTG-----GGGATCCTCACTCAGCAGTTTGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGAGGGTCTTCGGCCAGTGA----AGATTTACTCTGCTCAGA--GTGTTGGG--GT-CCCATCCTTTCTCCCCGGCTCCCCTGTTAACAGATGGTGCTGGACCTTGCCCCAGAAGGGGCTTGTAGCTTTTTTATGTCAACGAAATGCCCTCCTG--------------------TACTCTGTCTTCAGCAGCCAACTCCTGGAGCTGCCAAGTGAGGGGTTAAAGAAGAGGTGGGTAGGCAGCGTGGCTCCCTGGGTAA----TGTTTGTTGCTTTGGTTCTCAGTCCTGGGTATTCTAGAAGTTTGGACACGGGATT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87528371 407 - 96509753 CTGACACT----GTCAGAGAAAGTGGATTTATTGTGTCACAGGAGTTTCTGGGACCCAGCTCTTCCTGAGAGGGGTGGGAAGATTG-----GGGATCCTCACTCAGCAGTTTGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGAGGGTCTTCGGCCAGTGA----AGATTTACTCTGCTCAGA--GTGTTGGG--GT-CCCATCCTTTCTCCCCGGCTCCCCTGTTAACAGATGGTGCTGGACCTTGCCCCAGAAGGGGCTTGTAGCTTTTTTATGTCAACGAAATGCCCTCCTG--------------------TACTCTGTCTTCAGCAGCCAACTCCTGGAGCTGCCAAGTGAGGGGTTAAAGAAGAGGTGGGTAGGCAGCGTGGCTCCCTGGGTAA----TGTTTGTTGCTTTGGTTCTCAGTCCTGGGTATTCTAGAAGTTTGGACACGGGATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7017152 407 - 13098629 CTGACACT----GTCAGAGAAAGTGGATTTATTGTGTCACAGGAGTTTCTGGGACCCAGCTCTTCCTGAGAGGTGTGGGAAGATTG-----GGGATCCTCACTCAGCAGTTTGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGAGGGTCTTCGGCCAGTGA----AGATTTACTCTGCTCAGA--GTGTTGGG--GT-CCCATCCTTTCTCCCCGGCTCCCCTGTTAACAGATGGTGCTGGACCTTGCCCCAGAAGGGGCTTGTAGCTTTTTTATGTCAACGAAATGCCCTCCTG--------------------TACTCTGTCTTCAGCAGCCAACTCCTGGAGCTGCCAAGTGAGGGGTTAAAGAAGAGGTGGGTAGGCAGCGTGGCTCCCTGGGTAA----TGTTTGTTGCTTTGGTTCTCAGTCCTGGGTATTCTAGAAGTTTGGACACGGGATT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3989039 407 - 4483953 CTGACACT----GTCAGAGCAAGTGGATTTATTGTGTCACAGGAGTTTCTGGGACCCAGCTCTTCCTGAGAGGGGTGGGAAGATTG-----GGGATCCTCACTCAGCAGTTTGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGAGGGTCTTCGGCCAGTGA----AGATTTACTCTGCTCAGA--GTGTTGGG--GT-CCCATCCTTTCTCCTCAGCTCCCCTGTTAACAGATGGTGCTGGACCTTGCCCCAGAAGGGGCTTGTAGCTTTTTTATGTCAACGAAATGCCCTCCTG--------------------TACTCTGTCTTCAGCAGCCAACTCCTGGAGCTGCCAAGTGAGGGGTTAAAGAAGAGGTGGGTAGGCAGCGTGGTTCCCTGGGTAA----AGTTTGTTGCTTTGGTTCTCAGTCCTGGGTATTCTAGAAGTTTGGACACGGGATT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24615412 411 + 33263144 CTGACACT----GTCAGAGAAAGTGGATTTATTGTGTCACAGGAGTTTCTGGGACCCAGCTCTTCCTGAGAGGGGTGGGAAGATTG-----GGGATCCTCACTCAGCAGTTTGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGAGGGTCTTCGGCCAGTGAAGAGAGATTTACTCTGCTCAGA--GTGTTGGG--GT-CCCATCCTTTCTCCCCGGGTCCCCTGTTAACAGATGGTGCTGGACCTTGCCCCAGAAGGGGCTTGTAGCTTTTTTATGTCAACGAAATGCCCTCCTG--------------------TACTCTGTCTTCAGCAGCCAACTCCTGGAGCTGCCAAGTGAGGGGTTAAAGAAGAGGTGGGTAGGCAGCGTGGCTCCCTGGGTAA----AGTTTGTTGCTTTGGTTCTCAGTCCTGGGTATTCTAGAAGTTTGGACACGGGATT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13885965 407 - 14338769 CTGACACT----GTCAGAGAAAGTGGATTTATTGTGTCACAGGAGTTTCTGGGACCCAGCTCTTCCTGAGAGGGGTGGGAAGATTG-----GGGATCCTCACTCAGCAGTTTGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGAGGGTCTTCGGCCAGTGA----AGATTTACTCTGCTCAGA--GTGTTGGG--GT-CCCATCCTTTCTCCCCAGCTCCCCTGTTAACAGATGGTGCTGGACCTTGCCCCAGAAGGGGCTTGTAGCTTTTTTATGTCAACGAAATGCCCTCCTG--------------------TACTCTGTCTTCAACAGCCAACTCCTGGAGCTGCCAAGTGAGGGGTTAAAGAAGAGGTGGGTAGGCAGCGTGACTCCCTGGGTAA----AGTTTGTTGCTTTGGTTCTCAGTCCTGGGTATTCTAGAAGTTTGGACACGGGATT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 832268 407 + 1946073 CTGACACT----GTCAGAGAAAGTGGATTTATTGTGTCACAGGAGTTTCTGGGACCCAGCTCTTCCTGAGAGGGGTGGGAAGATTG-----GGGATCCTCACTCAGCAGTTTGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGAGGGTCTTCGGCCAGTGA----AGATTTATTCTGCTCAGA--GTGTTGGG--GT-CCCATCCTTTCTCCCCGGCTCCCCTGTTAACAGATGGTGCTGGACCTTGCCCCAGAAGGGGCTTGTAGCTTTTTTATGTCAACGAAATGCCCTCCTG--------------------TAGTCTGTCTTCAGCAGCCAACTCCTGGAGCTGCCAAGTGAGGGGTTAAAGAAGAGGTGGGTAGGCAGCGTGGCTCCCTGGGTAA----AGTTTGTTGCTTTGGTTCTCAGTCCTGGGTATTCTAGGAGTTTGGACACGGGATT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1870726 434 - 2117846 TTGACATTCATCGTCAGAGAAAGTGGATTTACCATGTCATAGGAGTTTCTGGGACACAGCTCTTCCTGAGAAGGGTGGGAAGATTGGGGATGGAATCCTCACTCAGCAATTTGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGCAAGTCTTTGGCCAGTGAAGATAAATTTATT-TGCTAAGA--AT-TTGGG--GC-CCCATCCTTTCTCTCTGGCTGCCCTGTTAACAGATGGTGCTGGACCTTGCCCCAGGAAGGGCTAGTAGC-TTTTTATGTCAGCAAAATGCCCTCCTGTACTCTGTCCTCAGTGGCCCTACTCTGTCCTCAGCAGCCAACTCCTGGAGCTGCCAAGTGAGGGGTTAAAGAAGAGGTGGGGAGGCAGTGTGGTT-CCTGGGGAA----GGTTGGTTGCTCTGG--CTCAGTCCTGGGCATTCCAGGAGCTTGGACACGGGATT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8790021 412 - 16357246 TTGACCTT----GTCAGAGAAAGTGGATTTACCATGTCATAGGAGTTTCTGGGACTCAGCTCTTCCCAAGAAGGCTGGGAAGATTGGGGATGGCATCCTCACTCAGCAATTCGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGCAAGTCTTTGGCCAGTGAAGAGAGATTTATTCTGCTAAGA--AT-TTGGG--GC-CCCATCCTTTCTCTCTGGCTGCCCTGTTAACAGATGGTGCTGGACCTTGCCCCAGGAAGGGCTATTAGC-TTTTGATGTCAGCAAAATGCCCTCCTG--------------------TACTCTGTCCTCAGCAGCCAACTCCTGGAGCTGCCAAGTGAGGGGTTAAAGAAGAGGTGGGGAGACAGTGTGGTT-CTCGGGGAA----AGTTGGTTGCTCTGGCTCTCAGTCCTGGGCATTCT-GGAGCTTGGACACGGGATT i saiBol1.JH378157 I 1 C 0 s cebCap1.NW_016107750v1 1264817 409 - 1807191 CCGACATT----GTCAGAGAAAGGGGATTTACCATGTCATAGGAGTTTCTGGGACTCAGCTCTTCCTGAGAAGGGTGGGAAGACTGGGGACGGAATCCTCACTCAACAATTTGGGTAGGGCCCTTT-GAG------------------------------------------------------------------------------------------GCAGTGAGTCTTTGGCCAGTGAAGAGAGATTTATTCTGCTAAGA--AT-TTGGG--GC-CCCATCCTTTCTCTCTGGCTGCCCTGTTAACAGATGGTGCTGGACCTTGCCCCA-GAAGGGCTAGTAGC-TTTTTATGTCAGCAAAATGCCCTCCTG--------------------TACTCTGTCCTCAGCAGCCAACTCCTGGAGCTGCCAAGTGAGGGGTTA---AAGAGGTGGGGAGGCAGTGTGGTT-CCTGGAGAA----AGCTGGTTGCTCTGGCTCTCAGTCCTGGGCATTCCAGGAGCTTGGACACGGGATT i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5621899 423 + 108171978 CTGACATT----GTCAGAGAAAGTGGATTTATTGTTTCATGGGGGTTTCTGGGACCCAGCTCTTCCTGAGAGGGGTGAGAAGATT-GGCATGGGATTCCCACCCAGCAGTTTAGGTAGGATCCTTT-GGA-----------------------------------------------------------------------------------------GGGAGAGGGCCTGCAGCCAATAA--AGGGATTTATTCTGCTCAGAAGGTGTTGGGGCGCCCCCATCCTGTCTCGATGGCTGCCCTGTCAACAGATAGTGCTGGGCATAGCCCCAGGAGGGGCTGGTGGCTTTTATATGTCAGCAGAAACCCCTGCTG--------------------TACTCTGTCCTCAACAGCCAGCTCCTAGAGCTGCCAAGTGAGAAGTTAAAGAAGAGGTGGGAAGGCAGTGTGGCTTCCTGGGGAAAGCCAGTTTGTTACTTTAGTTCTCAGTCCTGGGCATTCTAGGAGCTTGGACACAGGATT i micMur3.chr7 I 393 I 1280 s proCoq1.NW_012136747v1 4983109 418 - 6317780 CTGACATT----GTCAGAGAAAGTGGATTTATTGTTTCATGGGGGTTTCTGGGGCCCAGCTCTTCCTGAGAGGGGTGGGAAGATTGGGCATGGGATCCCCACCCTGCAGTTTGGGTAGGACCCTTT-GGA------------------------------------------------------------------------------------------GGAGAGGGCCTGCAGCCAATAA--AGGGATTTATTCTGCTCAGAAAGTGTTGGG--GCCCCCAGCCTGTCTCCCTGGCTGCCCTGTCAACAGATGGTGCTGGGTATTGCCCCAGGAGGGTCTGGTGGCTTTTATATGTCAGCAGAAACCCCTGCTG--------------------TACTCTGTCCTCAGCAGCCAGCTCCTGGAGCTGCCAAGTGAGAAGTTAAAGAA---GTGGGAAGGCAGTGTGGCTTCCTGGGGAAAGCCAGTTTCTTACTTTGGTTCTCAGTCCTGGGCATTCTAGGAGCTTGGACACAGGATT i proCoq1.NW_012136747v1 C 0 I 923 s otoGar3.GL873526 36236297 512 - 42659167 -TGACATT----GTCAGAGAAGATGGATTTAGTGTGTCATGGAGGTTTCTGGGGCCCAGCTCTTCCTGAGAGGGGTGGGAAGATTGGGCATGGGACCCCCACTCTACAGTTTGGATAGGACCCTTT-GGagcagtggttctcaacctgtgggttgcaagccctttgtaacattaggcataattacaggcattaggaaggttgagaaccactgctttGGAGGGACAGGGCCTTTGGCCAATAAAGAGGGATTTATTCTTCTCAGAAAGTGTTGGG--GTCCCCATCCTCTGTCCCTGGCTGCCCTGTCAACAGATGGTGCTAGACATTGGCCCGGGAGGGGCTGGTAGCTTTTATATGTCAGCAGAAATCCCTCCTG--------------------TACTGTGTCCTCAGCAACCAGTTCCTGGAGATGCCAAGTGAGAAGCTAAAGAAGAGGTGGACAGGCAGTATGATTCCCTGGGGAAACCCAGTTTGGTACTTTGCTTCTCAGTCCTAGGTATCCCAGGAGCTTCGACACAGGATT i otoGar3.GL873526 I 1 C 0 s canFam3.chr10 46033014 375 - 69331447 CTGACATT----GTCAGAGAAAGTAGATTTAT--TGTTATGGGGGTTTCTGGGGCCCAGCTCTTCCTGAGCGGTG----------GGGCACAGGACCCCCACTCTGCAGCTTGAGTGGGGCCCTTTGGAG------------------------------------------------------------------------------------------GGAGAGGGCCTTCAGCCAGCAACGAGGGATTAATTCTGCTCGGAGAGTGTTGGG--GCTCCCAGCTTCTCTCCCTGGCTGCCATGTCTATAGATGGTGCTTGTCATCGCCCCAGGAGGGGCTGGTGGCTTTTCAGCGTCAGCAGAAATCCTTCCTG--------------------TATTCTGTCTTCAGATGCCAGCTCCTGGAGCTGCCAA-------------------GTGGGGAGGCCGTGTGGCTCCCTGGGGAG-----------------GCCCCTCAGTCCAGGGCATTCTCGGAGCTTGGACACAGGCT- i canFam3.chr10 C 0 C 0 a score=1241278.000000 s hg38.chr22_GL383582v2_alt 1275 137 + 162811 GC----GTTTCCTGTGCTAAAATTCTCTCTCCTGGCTGGGCTCCGGTA-AAC--------------TGAAGCTGCTCGAGAAATC-ACCTGGGAA-CTC--TCATAGCC--GTTTGTCACCCAGGGTGTACTTGCCAGGACCTC------------------TCCTTGCTACTCTTCCCA------------- s panTro5.chr22 28754431 139 + 37823149 GC----GTTTCCTGTGCTAAAATTCTCTCTCCTGGCTGGGCTCCGGTA-AAC--------------TGAAGCTGCTCGAGAAACC-ACCTGGGAA-CTC--TCACAGCCCTGTTTGTCACCCAGGGTGTACTTGCCAGGACCTC------------------TCCTTGCTACTCTTCCCA------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41056583 139 + 50109623 GC----GTTTCCTGTGCTAAAATTCTCTCTCCTGGCTGGGCTCCGGTA-AAC--------------TGAAGCTGCTCGAGAAACC-ACCTGGGAA-CTC--TCACAGCCCTGTTTGTCACCCAGGGTGTACTTGCCAGGACCTC------------------TCCTTGCTACTCTTCCCA------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3031496 139 + 4464012 GC----GTTTCCTGTGCTGAAATTCTCTCTCCTGGCTGGGCTCCGGTA-AAC--------------TGAAGCTGCTCGAGAAACC-ACCTGAGAA-CTC--TCATAGCCCTGTTTGTCACCCAGGGTGTACTTGCCAGGACCTC------------------TCCTTGCTACTCTTCCCA------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106561336 139 - 115148730 CC----ATTTCCTGTGCTAAAATTCTCTCTCCTGGCTGGGCTCCGGTA-AAC--------------TGAAGCTGCTCGAGAAACC-ACCTGGGAA-CTC--TCATAGCCCTGTTTGTCACCCAGGGTGTACGTGCCAGGACCTC------------------TCCTTGCTACTCTTCCCA------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84183930 139 + 92844088 CC----GTTTCCTGTGCTAAAATTCTCCCTCCTGGCTGGGCTCCGGTA-AAC--------------TGAAGCTGCTCGAGAAACC-ACCTGGAAA-CTC--TCATAGCCCTGTTTGTCACCCAGGGTGTACTTGCCAGGACCTT------------------TCCTTGCTACTCTTCCCA------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87528778 139 - 96509753 CC----GTTTCCTGTGCTAAAATTCTCCCTCCTGGCTGGGCTCCGGTA-AAC--------------TGAAGCTGCTCGAGAAACC-ACCTGGAAA-CTC--TCATAGCCCTGTTTGTCACCCAGGGTGTACTTGCCAGGACCTT------------------TCCTTGCTACTCTTCCCA------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7017559 139 - 13098629 CC----GTTTCCTGTGCTAAAATTCTCCCTCCTGGCTGGGCTCCGGTA-AAC--------------TGAAGCTGCTCGAGAAACC-ACCTGGAAA-CTC--TCATAGCCCTGTTTGTCACCCAGAGTGTACTTGCCAGGACCTT------------------TCCTTGCTACTCTTCCCA------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3989446 139 - 4483953 CC----GTTTCCTGTGCTAAAATTCTCCCTCCTGGCTGGGCTCCCGTA-AAC--------------TGAAGCTACTCGAGAAACC-ACCTGGAAA-CTC--TCATAGCCCTGTTTGTCACCCAGGGTGTACTTGCCAGGACCTT------------------TCCTTGCTACTCTTCCCA------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24615823 139 + 33263144 CC----GTTTCCTGTGCTAAAATTCTCCCTCCTGGCTGGGCTCCGGTA-AAC--------------TGAAGCTGCTCGAGAAACC-ACCTGGAAA-CTC--TCATAGCCCTGTTTGTCACCCAGGGTGTACTTGCCAGGACCTT------------------TCCTTGCTACTCTTCCCA------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13886372 139 - 14338769 CC----GTTTCCTGTGCTAAAATTCTCCCTCCTGGCTGGGCTCCCGTA-AAC--------------TGAAGCTACTCGAGAAACC-ACCTGGAAA-CTC--TCATAGCCCTGTTTGTCACCCAGGGTGTACTTGCCAGGACCTT------------------TCCTTGCTACTCTTCCCA------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 832675 139 + 1946073 TC----GTTTCCTGTACTAAAATTCTCTCTCCTGGCTGGGCTCCGGTA-AAC--------------TGAAGCTGCTCGAGAAACC-ACCTGGAAA-CTC--TCATAGCCCTGCTTGTCACCCAGAGTGTACCTGCCAGGACCTT------------------TCCTTGCTACTCTTCCCA------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1871160 151 - 2117846 CCC--AGTTTCCTGTGCTAAAA---CCTCTCCTGGCTGGGCTCCGGTA-AAA-GTGTTCTTGCAAGTGAAGCTGCTCAAGAAACC-ACCTGGGAA-CTC--TCATAGCCCTGTTTGTCACCTAGCGTGTACTTGCCAGGACCCC------------------TCCTTGCTACTATTCCCA------------- i calJac3.chrUn_GL286373 C 0 I 339 s saiBol1.JH378157 8790433 153 - 16357246 CCC--AGTTTCCTGTGCTAAAA-TCTCTCTCCTGGCTGGGCTCGGGTA-AAA-GTGTTCTTGCAAGTGAAGCTGCTCAAGAAACC-ACCTGGGAA-CTC--TCATAGCCCTGTTTGTCACCTAGCGTGTACTTGCCAGGACCCC------------------TCCTTGCTACTATTCCCA------------- i saiBol1.JH378157 C 0 I 344 s cebCap1.NW_016107750v1 1265226 148 - 1807191 CC----GTTTCCTGTGCT---A-TCTCTCTCCTGGCTGGGCTCCGGTA-AAA-GTGTTCTTGCAAGTGAAGCTGCTCTAGAAACC-ACCTGGGAA-CTC--TCATAGCCCTGTTTGTCACCTAGCGTGTACTTGCCAGGACCCC------------------TCCTTGCTACTATTCCCA------------- i cebCap1.NW_016107750v1 C 0 I 349 s otoGar3.GL873526 36236809 171 - 42659167 --CCTGGAACCTTGTGGT-AATTCTTATCTCCGGGCTGGGCTTCCATC-AAGAATGCTCCTGCTCCTGAAACTGCTAGTGAGGTC-ATCTAGAACTCTT--TCACAGTCCTGCTTGCCATC--AGATTAACTTGCCCAAACCTCATGGCTAGTCTCCCAGCATCCTGACAACTGttttct------------- i otoGar3.GL873526 C 0 I 45 s canFam3.chr10 46033389 143 - 69331447 --------TCCCAGCACT-------CTTCTCCCGACTGCCCTCCCAAAGAGC--------------TGTTCCTGATCCTGAACCCGGCCTGGGAA-CTCCTTCAGCACCCTGTTTGTCAGCCAGTGCATGTCTGCCAAGACCCT------------------CTCATG--GCTCCTCTCAGCGGCACGGCCCC i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4983527 923 - 6317780 I e micMur3.chr7 5622322 1280 + 108171978 I a score=9965.000000 s hg38.chr22_GL383582v2_alt 1412 5 + 162811 -------AAGTC--------- s panTro5.chr22 28754570 5 + 37823149 -------AAGTC--------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41056722 5 + 50109623 -------AAGTC--------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3031635 5 + 4464012 -------ACGTC--------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106561475 5 - 115148730 -------ATATC--------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84184069 5 + 92844088 -------ACATC--------- i rheMac8.chr10 C 0 I 23 s macFas5.chr10 87528917 5 - 96509753 -------ACATC--------- i macFas5.chr10 C 0 I 23 s macNem1.NW_012012688v1 7017698 5 - 13098629 -------ACATC--------- i macNem1.NW_012012688v1 C 0 I 23 s cerAty1.NW_011999588v1 3989585 5 - 4483953 -------ACATC--------- i cerAty1.NW_011999588v1 C 0 I 23 s chlSab2.chr19 24615962 5 + 33263144 -------ACATC--------- i chlSab2.chr19 C 0 I 23 s manLeu1.NW_012102031v1 13886511 5 - 14338769 -------ACATC--------- i manLeu1.NW_012102031v1 C 0 I 23 s colAng1.NW_012115588v1 832814 5 + 1946073 -------ACATC--------- i colAng1.NW_012115588v1 C 0 I 23 s otoGar3.GL873526 36237025 5 - 42659167 -------aaggc--------- i otoGar3.GL873526 I 45 C 0 s canFam3.chr10 46033532 21 - 69331447 AAGTGTTTTATCGATGGTTTA i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4983527 923 - 6317780 I e micMur3.chr7 5622322 1280 + 108171978 I e cebCap1.NW_016107750v1 1265374 349 - 1807191 I e saiBol1.JH378157 8790586 344 - 16357246 I e calJac3.chrUn_GL286373 1871311 339 - 2117846 I a score=87846.000000 s hg38.chr22_GL383582v2_alt 1417 13 + 162811 GGGAGGCAAA---GCG s panTro5.chr22 28754575 13 + 37823149 GGGAGGCAAA---GCG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41056727 13 + 50109623 GGGAGGCAAA---GCG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3031640 13 + 4464012 GGGAGGCAAA---GCG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106561480 13 - 115148730 GGGAGGCAAA---GCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84184097 13 + 92844088 GGGAGGCAAA---GCG i rheMac8.chr10 I 23 C 0 s macFas5.chr10 87528945 13 - 96509753 GGGAGGCAAA---GCG i macFas5.chr10 I 23 C 0 s macNem1.NW_012012688v1 7017726 13 - 13098629 GGGAGGCAAA---GCG i macNem1.NW_012012688v1 I 23 C 0 s cerAty1.NW_011999588v1 3989613 13 - 4483953 GAGAGGCAAA---GCG i cerAty1.NW_011999588v1 I 23 C 0 s chlSab2.chr19 24615990 13 + 33263144 GGGAGGCAAA---GCG i chlSab2.chr19 I 23 C 0 s manLeu1.NW_012102031v1 13886539 13 - 14338769 GGGAGGCAAA---GCG i manLeu1.NW_012102031v1 I 23 C 0 s colAng1.NW_012115588v1 832842 13 + 1946073 GGGAGGCAAA---GCG i colAng1.NW_012115588v1 I 23 C 0 s calJac3.chrUn_GL286373 1871650 12 - 2117846 GGGAAGCAAA---GT- i calJac3.chrUn_GL286373 I 339 C 0 s saiBol1.JH378157 8790930 15 - 16357246 GGGAAGCAAAGTGGT- i saiBol1.JH378157 I 344 C 0 s otoGar3.GL873526 36237030 12 - 42659167 -tggagtgca---gtg i otoGar3.GL873526 C 0 I 22 s canFam3.chr10 46033553 13 - 69331447 GGGTGTCGGC---GTG i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4983527 923 - 6317780 I e micMur3.chr7 5622322 1280 + 108171978 I e cebCap1.NW_016107750v1 1265374 349 - 1807191 I a score=304790.000000 s hg38.chr22_GL383582v2_alt 1430 32 + 162811 GCTGGGT------CACCAG-AGCCTGACCA----TACTGACGC s panTro5.chr22 28754588 32 + 37823149 GCTGGGT------CACCAG-AGCCTGACCA----TACTGACGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41056740 32 + 50109623 GCTGGGT------CACCAG-AGCCTGACCA----TACTGACGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3031653 32 + 4464012 GCTGGGT------CACCAG-AGCCTGACCA----TACTGACGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106561493 32 - 115148730 GCTGGGT------AACCAG-AGCCTGACCG----TACTGACGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84184110 32 + 92844088 GCTGGGT------CACCAG-AGCCTAACCA----GACTGACGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87528958 32 - 96509753 GCTGGGT------CACCAG-AGCCTAACCA----GACTGACGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7017739 32 - 13098629 GCTGGGT------CACCAG-AGCCTAACCA----GACTGACGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3989626 32 - 4483953 GCTGGGT------CACCAG-AGCCTAACCA----GACTGACGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24616003 32 + 33263144 GCTGGGT------AACCAG-AGCCTAACCA----GACTGACGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13886552 32 - 14338769 GCTGGGT------CACCAG-AGCCTAACCA----GACTGACGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 832855 32 + 1946073 GCTGGGT------CACCAG-AGCCTGACCA----GACTGACGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1871662 32 - 2117846 GCTGGGT------CACCAG-AGTCTGACCA----GACTGACGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8790945 32 - 16357246 GCTGGGT------CACCAG-AGCCTGACCA----GACTGACGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1265723 32 - 1807191 GCTGGGT------CACCAG-AGCCTGACCA----GACTGACGC i cebCap1.NW_016107750v1 I 349 I 28 s otoGar3.GL873526 36237064 36 - 42659167 actggaa------cttctg-agctcaagcaatcctcctgtctc i otoGar3.GL873526 I 22 C 0 s canFam3.chr10 46033566 39 - 69331447 TCTGGGTGGAGAGAGCCAGCAGCCAGCCCA----GCCTGAGCC i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4983527 923 - 6317780 I e micMur3.chr7 5622322 1280 + 108171978 I a score=48639.000000 s hg38.chr22_GL383582v2_alt 1462 7 + 162811 TCCAGGG- s panTro5.chr22 28754620 7 + 37823149 TCCAGGG- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41056772 7 + 50109623 TCCAGGG- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3031685 7 + 4464012 TCCAGGG- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106561525 7 - 115148730 CCCAGGG- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84184142 7 + 92844088 CCCAGGG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87528990 7 - 96509753 CCCAGGG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7017771 7 - 13098629 CCCAGGG- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3989658 7 - 4483953 CCCAGGG- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24616035 7 + 33263144 CCCAGGG- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13886584 7 - 14338769 CCCAGGG- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 832887 7 + 1946073 CCCAGGG- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1871694 7 - 2117846 CTTAGGG- i calJac3.chrUn_GL286373 C 0 I 21 s saiBol1.JH378157 8790977 7 - 16357246 CTTAGAG- i saiBol1.JH378157 C 0 I 21 s otoGar3.GL873526 36237100 6 - 42659167 -caaagg- i otoGar3.GL873526 C 0 I 1 s canFam3.chr10 46033605 7 - 69331447 -CTTGGGT i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4983527 923 - 6317780 I e micMur3.chr7 5622322 1280 + 108171978 I e cebCap1.NW_016107750v1 1265755 28 - 1807191 I a score=2799696.000000 s hg38.chr22_GL383582v2_alt 1469 354 + 162811 ------------------GGAAGACGCAGAGGCCGG-----------------------GAAGAGACACCCCCTCCCAAACAC-------ATAA----------------------------------------------------------------------------AACTTGCCCCTTC---CTAGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGACCGACCCGCATCCAACTAGGCCTAAGGG----GTAGGCTCTGAGCCT-----CTTACCC---CTA-AGAGGCGGAGATGC-GCCCAAGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCCCCGCA-----GCCACTGCATTTTGTTT-AAACACAGATAGCACGGGCCTT---TC--TCTTA---TTGCTACAGTG----TTTTGTACACGGTTAAAACACTAGTAAAG---CTTTTTCGTTATTACTCCT-TCCGCTCCCTGGGTTTATTTCCACAACCGGCCGCT s panTro5.chr22 28754627 354 + 37823149 ------------------GGAAGACGCAGAGGCCGG-----------------------GAAGAGACACCCCCTCCCAAACAC-------ATAA----------------------------------------------------------------------------AACTTGCCCCTTC---CTAGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGACCGACCCGCATCCAACTAGGCCTAAGGG----GTAGGCTCTGAGCCT-----CTTACCC---CTA-AGAGGCGGAGATGC-GCCCAAGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCCCCGCA-----GCCACTGCATTTTGTTT-AAACACAGATAGCACGGGCCTT---TC--TCTTA---TTGCTACAGTG----TTTTGTACACGGTTAAAACACTAGTAAAG---CTTTTTCGTTATTACTCCT-TCCGCTCCCTGGGTTTATTTCCACAACCGGCCGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41056779 354 + 50109623 ------------------GGAAGACGCAGAGGCCGG-----------------------GAAGAGACACCCCCTCCCAAACAC-------ATAA----------------------------------------------------------------------------AACTTGCCCCTTC---CTAGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGACCGACCCGCATCCAACTAGGCCTAAGGG----GTAGGCTCTGAGCCT-----CTTACCC---CTA-AGAGGCGGAGATGC-GCCCAAGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCCCCGCA-----GCCACTGCATTTTGTTT-AAACACAGATAGCACGGGCCTT---TC--TCTTA---TTGCTACAGTG----TTTTGTACACGGTTAAAACACTAGTAAAG---CTTTTTCGTTATTACTCCT-TCCGCTCCCTGGGTTTATTTCCACAACCGGCCGCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3031692 354 + 4464012 ------------------GGAAGATGCACAGGCCGG-----------------------GAAGAGACACCCCCTCCCAAACAC-------ATAA----------------------------------------------------------------------------AACTTGCCCCTTC---CTAGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGACCGACCCGCATCCAACTAGGCCTAAGGG----GTAGGCTCTGAGCCT-----CTTACCC---CTA-AGAGGCGGAGATGC-GCCCAAGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGACGCCCCGCA-----GCCACTGCATTTTGTCT-AAACACAGATAGCACGGGCCTT---TC--TCTTA---TTGCTACAGTG----TTTTGTACACGGTTAAAACACCAGTAAAG---CTTTTTCGTTATTACTCCT-TCCGCTCCCTGGGTTTATTTCCACAGCCGGCCGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106561532 337 - 115148730 ------------------GGAAGACGC------------------------------------AGACACCCGCTCCCAAACAC-------ATAT----------------------------------------------------------------------------ATCTTGCCCCTTC---CTAGCCTTGGCTCCCCTCACTGGGGCCTTGGGCAGGACCGACCCGCATCCAACTAGGCCTAAGGG----GTAGACTCTGAGCCT-----CTTACCC---CCA-GGAGGCGGAGATGC-GCCCAAGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCCCCGCA-----GCCACTGCATTTTGTTT-AAACAC----AGCACGGGCCTT---TT--TCTTA---TTGCTACAGTG----TTTTGTACACGGTTAAAACACTAGTAAAG---CTTTTTCGTTATTACTCCT-TCGGCTCCCTGGGTTTATTTCCACAGCCGGCCGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84184149 341 + 92844088 ------------------GGAAGACGCAGAGGCCGG-----------------------GAGGAGACACCCCCTCCCAAACAC-------ACAA----------------------------------------------------------------------------AACTTGCCTCTTC---CTGGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGGCTGACCCGCACCCAACTAGGCCTAAGGG----GGACGCTCGGAGCCT-----CTTACCC---CCA-GGAGGCGGAGATGC-GCCCAGGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCTCCGCA-----GCCACTGCATTTTGTTG--------------ACGGGCCCT---TC--TCTTA---TTACTACAGTG----TTTTGTACGCGGTTAAAACACTAGTAAAG---CTTTTTCATTATTACTCAT-TCGTCTCCCTGGGTTTATTTCTACAGCCGGCCACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87528997 342 - 96509753 ------------------GGAAGACGCAGAGGCCGG-----------------------GAGGAGACACCCCCTCCCAAACAC-------ACAA----------------------------------------------------------------------------AACTTGCCTCTTC---CTGGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGGCTGACCCGCACCCAACTAGGCCTAAGGG----GGACGCTCGGAGCCT-----CTTACCC---CCAGGGAGGCGGAGATGC-GCCCAGGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCTCCGCA-----GCCACTGCATTTTGTTG--------------ACGGGCCCT---TC--TCTTA---TTACTACAGTG----TTTTGTACGCGGTTAAAACACTAGTAAAG---CTTTTTCATTATTACTCAT-TCGTCTCCCTGGGTTTATTTCTACAGCCGGCCACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7017778 341 - 13098629 ------------------AGAAGACGCAGAGGCCGG-----------------------GAGGAGACACCCCCTCCCAAACAC-------ACAA----------------------------------------------------------------------------AACTTGCCTCTTC---CTGGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGGCTGACCCGCACCCAACTAGGCCTAAGGG----GGACGCTCGGAGCCT-----CTTACCC---CCA-GGAGGCGGAGATGC-GCCCAGGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCTCCGCA-----GCCACTGCATTTTGTTG--------------ACGGGCCCT---TC--TCTTA---TTGCTACAGTG----TTTTGTACGCGGTTAAAACACTAGTAAAG---CTTTTTCATTATTACTCAT-TCGTCTCCCTGGGTTTATTTCTACAGCCGGCCACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3989665 341 - 4483953 ------------------GGAAGACGCAGAGGCCGG-----------------------GAGGAGACACCCCCTCCCAAACAC-------ACAA----------------------------------------------------------------------------AACTTGCCTCTTC---CTGGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGGGTGACCCGCACCCAACTAGGCCTAAGGG----GGACGCTCGGAGCCT-----CTTACCC---CCA-GGAGGCGGAGATGC-GCCCAGGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCTCCGCA-----GCCACTGCATTTTGTTG--------------ACGGGCCCT---TC--TCTTA---TTGCTACAGTG----TTTTGTACGCGGTTAAAACACTAGTAAAG---CTTTTTCATTATTACTCAT-TCGTCTCCCTGGGTTTATTTCCACAGCCGGCCGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24616042 341 + 33263144 ------------------AGAAGACGCAGAGGCCGG-----------------------GAGGAGACACCCCCTCCCAAACAC-------ACAA----------------------------------------------------------------------------AACTTGCCCCTTC---CTGGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGGCTGACCCGCACCCAACTAGGCCTAAGGG----GGACGCTCGGAGCCT-----CTTACCC---CCA-GGAGACGGAGATGC-GCCCAGGGCGGGCGCCCGGACTGTTCCCCACCCCTGCCTGGAAGCTCCGCA-----GCCACTGCATTTTGTTG--------------ACGGGCCCT---TC--TCTTA---TTCCTACAGTG----TTTTGTACGCGGTTAAAACACTAGTAAAG---CTTTTTCATTATTACTCAT-TCGTCTCCCTGGGTTTATTTCCACAGCCGGCCGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13886591 341 - 14338769 ------------------GGAAGACGCAGAGGCCGG-----------------------GAGGAGACACCCCCTCCCAAACAC-------ACAA----------------------------------------------------------------------------AACTTGCCTCTTC---CTGGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGGGTGACCCGCACCCAACTAGGCCTAAGGG----GGACGCTCGGAGCCT-----CTTACCC---CCA-GGAGGCGGAGATGC-GCCCAGGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCTCCGCA-----GCCACTGCATTTTGTTG--------------ACAGGCCCT---TC--TCTTA---TTGCTACAGTG----TTTTGTACGCGGTTAAAACACTAGTAAAG---CTTTTTCATTATTACTCAT-TCGTCTCCCTGGGTTTATTTCCACAGCCCGCCGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 832894 354 + 1946073 ------------------GGAAGACGCAGAGGCCGG-----------------------GAGGAGACACCCCCTCCCAAACAC-------ACAA----------------------------------------------------------------------------AACTTGCCCCTTC---CTCGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGACTGACCCGCACCCAACTAGGCCTAAGGG----GGACGCTCGGAGCCT-----CTTACCC---GCA-GGAGGCGGAGATGC-GTCCAGGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCTCTGCA-----GCCACTGCATTTTGTTG-AAGCACAGATAGCACGGGCCCT---TC--TCTTA---TTGCTACAGTG----TTTTGTATGCGGTTAAAACACTAGTAAAG---CTTTTTCATTATTACTCAT-TCGTCTCCCTGGGTTTATTTCCATAGCCGGCTGTT i colAng1.NW_012115588v1 C 0 I 35 s calJac3.chrUn_GL286373 1871722 343 - 2117846 ------------------GGAAGCCGCAGAGCCCCA-----------------------GAGGAGACACCCCCTCCCCCCCAC-------ACAA----------------------------------------------------------------------------AACCTACC-CTCC---CTAGCCTCCGCTACCCTCACTGGGGCCTTGGGCAGCACCGACCGGCACCCAACTAGGCCTTAGGC----AGAGGCTCACAGCCT---------CCC---CCA-GGAGCCTGAGATGC-ACCCAGGGTGGGCGCCCGGCCTGTTCCCTAGCCCTGCCTGGGAGCCCCGCA-----GCCGCTGCACTTTGTTTTATACACAGACAGCACGGGCCTT---TCTTTCTTA---TTGC-----TG----CTTGGTACGCGGTTAAAACACTAGTAAAG---CTTTTTCATTATTATTCAT-TCGGCTCCCTAGGTTTCTTTCCACAGCCGCT---- i calJac3.chrUn_GL286373 I 21 C 0 s saiBol1.JH378157 8791005 329 - 16357246 ------------------GGAAGACGCAGAACCCCA-----------------------GAGGAGACACCCCCTCCCC--------------------------------------------------------------------------------------------------------------AGCCTCCGCTACCCTCACTGGGGCCTTGGGCAGGACCGACAGGCACCCAACCAGGACTTAGGC----GGAGGTTCACAGCCT-----CCTACCC---CCA-GGAGCCTGAGATGC-ACCCAGGGTGGGCGCCGGGCCAGTTCCCCAGCCCTGCCTGGGAGCCCCGCC-----CCCACTGCACTTTGCTTTATACACAGATCGCACGGGCCTT---TCTTTTTTA---TTGTTACAGTG----CTTGGCACGCGGTTAAAACAGTAGTAAAG---CTTTTTCATTATTACTCAT-TCGGCTCCCTAGGTTTTTTTCCGCAGCCGCT---- i saiBol1.JH378157 I 21 C 0 s cebCap1.NW_016107750v1 1265783 352 - 1807191 ------------------GGAAGACGCAGAGCCCCA-----------------------GAGGAGACACCCCCTCCCACACAC-------AGAC----------------------------------------------------------------------------AACCTGCC-GTCC---CTAGCCTCTGCTACCCTCACTGGGGCCTCGGGCAGGACCGACCGGCACCCAACTAGGCCTTAGGC----GGAGGCTCACAGCCT-----CTTACCC---CCA-GGAGCCTGAGATGC-AACCAGGGTGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGGAGCCCCGCA-----GCCACTGCACTTTGTTTTATACACAGATCGCACGGGCCTT---TTTTTCTTA---TTGCTACAGTG----CTTGGTACGCGGTTAAAACACTAGTAAAG---CTTTTTCAATGTTACTCAT-TCGGCTCCCTAGGTTTTTTTCCGCAGCCGCT---- i cebCap1.NW_016107750v1 I 28 C 0 s otoGar3.GL873526 36237107 447 - 42659167 ------------------gctagaactataggTTGGCTAGTTTATTATTTTTCTTTTTTATGGAGACAGGCCACCCAGAGTGCTGGGGTTACAAAGGGCCGGAGGCTAGACCAGCTGATAACCTAGGGGTGTGGCAGCAGTGGCTGGTGGGAAGATGCAGAGCTTGGTTGAATCTGCCCCTTCGTAGTAGTCTCTCTTTCCCTTAACCGGGCCTTGGGCA-----AACCAAGAAACAATTACGCCACAGAC----AGAAAGAAGCTGAGT-----CTCATCC---TCA-GCAGGTTGAGATGCTACCCAGGG------------CTGTTCCCTCATCCTGTTTCCCAGTCCCATA-----GCCACTGCACTTTATAT-----ACAGATACTACAGCATTTATCTT--TCTTA---TTATCACAGTT----TTTTGTATACGATTAAACACTGAATAAAGGGTTTTTTTTACTATTACTCATAACGGGCCCTTAGGTTTATTTC---AACCATCCCCT i otoGar3.GL873526 I 1 C 0 s canFam3.chr10 46033612 348 - 69331447 GTGGCCGCCGTGGCCGGTCGGGGATGCAGAGCCTGG-----------------------GCCGACGGGCCCCTCTCCACACAC-------CCAG----------------------------------------------------------------------------------TCGGCCC---CGAGCCTCTCCGTCCCCTCTTAGCAGCTTGGGTA-CACGGCCCCGGGCCGGACCGGGTCTGGAGGCTTCGCGGGCCCAGGACCCCGAGGCTGACCCAGTCCC-AAAGGCT----TGT-TTCCCAGGAGGCGGGGCGGCCGCCTACCCAGCCC--CCT----GCTTCATACAGATACCACAGCATTTTGTTA---------------------TC---GT--TCTTACGGTTATTACAGTGGTTTTTTAATATACGATTAAAACACT----AAG---TTTT-----TATTACTCAC-TTTGGTTTC--AGTTCATTTCAACAATCACTTGCC i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4983527 923 - 6317780 I e micMur3.chr7 5622322 1280 + 108171978 I a score=21027.000000 s hg38.chr22_GL383582v2_alt 1823 3 + 162811 GAG s panTro5.chr22 28754981 3 + 37823149 GAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41057133 3 + 50109623 GAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3032046 3 + 4464012 GAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106561869 3 - 115148730 GAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84184490 3 + 92844088 AAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87529339 3 - 96509753 AAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7018119 3 - 13098629 AAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3990006 3 - 4483953 AAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24616383 3 + 33263144 AAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13886932 3 - 14338769 AAG i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1872065 3 - 2117846 GAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8791334 3 - 16357246 GAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1266135 3 - 1807191 GAG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36237554 3 - 42659167 GAC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46033960 3 - 69331447 CAG i canFam3.chr10 C 0 I 412 e proCoq1.NW_012136747v1 4983527 923 - 6317780 I e micMur3.chr7 5622322 1280 + 108171978 I e colAng1.NW_012115588v1 833248 35 + 1946073 I a score=117163.000000 s hg38.chr22_GL383582v2_alt 1826 20 + 162811 GCCTGTTCTGACGGCC-GGGC s panTro5.chr22 28754984 20 + 37823149 GCCTGTTCTGACGGCC-GGGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41057136 20 + 50109623 GCCTGTTCTGACGGCC-GGGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3032049 20 + 4464012 GCCTGTTCTGACGGCC-GGGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106561872 20 - 115148730 GCCTGTTCTGACGGCC-GGGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84184493 20 + 92844088 TCCTGCTCCGGCCACC-GTGC i rheMac8.chr10 C 0 I 13 s macFas5.chr10 87529342 20 - 96509753 TCCTGCTCCGGCCACC-GTGC i macFas5.chr10 C 0 I 13 s macNem1.NW_012012688v1 7018122 20 - 13098629 TCCTGCTCCGGCCACC-GTGC i macNem1.NW_012012688v1 C 0 I 13 s cerAty1.NW_011999588v1 3990009 20 - 4483953 TCCTGCTCCGGCCACC-GTGC i cerAty1.NW_011999588v1 C 0 I 13 s chlSab2.chr19 24616386 20 + 33263144 TCCTGCTCCGGCCACC-GTGC i chlSab2.chr19 C 0 I 13 s manLeu1.NW_012102031v1 13886935 20 - 14338769 TCCTGCTCCGGCCACC-GTGC i manLeu1.NW_012102031v1 C 0 I 13 s calJac3.chrUn_GL286373 1872068 21 - 2117846 GCCTGCTCTGGCGGCCGGGGG i calJac3.chrUn_GL286373 C 0 I 13 s saiBol1.JH378157 8791337 20 - 16357246 GCCTGCTCTGGCGGTC-GGGT i saiBol1.JH378157 C 0 I 13 s cebCap1.NW_016107750v1 1266138 20 - 1807191 GCCTGCTCTGGCGGCC-GGGC i cebCap1.NW_016107750v1 C 0 I 13 s otoGar3.GL873526 36237557 20 - 42659167 GCCGTCCCCAGCAGCC-CAGC i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46033963 412 - 69331447 I e proCoq1.NW_012136747v1 4983527 923 - 6317780 I e micMur3.chr7 5622322 1280 + 108171978 I e colAng1.NW_012115588v1 833248 35 + 1946073 I a score=12593.000000 s hg38.chr22_GL383582v2_alt 1846 4 + 162811 -----------------------------------GGAC s panTro5.chr22 28755004 4 + 37823149 -----------------------------------GGAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41057156 4 + 50109623 -----------------------------------GGAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3032069 4 + 4464012 -----------------------------------GGAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106561892 4 - 115148730 -----------------------------------GGAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84184526 4 + 92844088 -----------------------------------GGAC i rheMac8.chr10 I 13 C 0 s macFas5.chr10 87529375 4 - 96509753 -----------------------------------GGAC i macFas5.chr10 I 13 C 0 s macNem1.NW_012012688v1 7018155 4 - 13098629 -----------------------------------GGAC i macNem1.NW_012012688v1 I 13 C 0 s cerAty1.NW_011999588v1 3990042 4 - 4483953 -----------------------------------GGAC i cerAty1.NW_011999588v1 I 13 C 0 s chlSab2.chr19 24616419 4 + 33263144 -----------------------------------GGAC i chlSab2.chr19 I 13 C 0 s manLeu1.NW_012102031v1 13886968 4 - 14338769 -----------------------------------GGAC i manLeu1.NW_012102031v1 I 13 C 0 s colAng1.NW_012115588v1 833283 4 + 1946073 -----------------------------------GGAT i colAng1.NW_012115588v1 I 35 C 0 s calJac3.chrUn_GL286373 1872102 4 - 2117846 -----------------------------------GGAA i calJac3.chrUn_GL286373 I 13 C 0 s saiBol1.JH378157 8791370 4 - 16357246 -----------------------------------AGAA i saiBol1.JH378157 I 13 C 0 s cebCap1.NW_016107750v1 1266171 4 - 1807191 -----------------------------------GGGA i cebCap1.NW_016107750v1 I 13 C 0 s otoGar3.GL873526 36237577 39 - 42659167 GGTACTGGGTGTAGCAACAATGACAAGTCTTCACTCGGC i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46033963 412 - 69331447 I e proCoq1.NW_012136747v1 4983527 923 - 6317780 I e micMur3.chr7 5622322 1280 + 108171978 I a score=993754.000000 s hg38.chr22_GL383582v2_alt 1850 125 + 162811 CCA-----AGACCGC---------GGCCACGCCCAGCAGGACGCGGACTG-AGGGAG---CCGGGGCTGCGCCGCCACTCTCGTGACGCCACCATGCCGGCC-AGTGACAAACACCTCCCTCCCGCCGCCCCAGGAGCCGCCGG s panTro5.chr22 28755008 125 + 37823149 CCA-----AGACCGC---------GGCCACGCCCAGCAGGACGCGGACTG-AGGGAG---CCGGGGCGGCGCCGCCGCTCTCGTGACGCCACCACGCCGGCC-AGTGACAAACACCTCCCTCCCGCCGCCCCAGGAGCCGCCGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41057160 125 + 50109623 CCA-----AGACCGC---------GGCCACGCCCAGCAGGACGCGGACTG-AGGGAG---CCGGGGCGGCGCCGCCGCTCTCGTGACGCCACCACGCCGGCC-AGTGACAAACACCTCCCTCCCGCCGCCCCAGGAGCCGCCGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3032073 125 + 4464012 CCA-----AGACCGC---------GGCCACGCCCAGCAGGACGCGGGCTG-AGGGAG---CCGGGGCGGCGCCGCCGCTCTCGTGACGCCACCACGCCGGCC-AGTGACAAACACCTCCCTCCCGCCGCCCCAGGAGCCGCCGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106561896 125 - 115148730 CCA-----GGACTGC---------GGCCACGCCCAGCAGGACGCGGACGG-AGAGGG---CCGGGGCGACGCCGCCGCTCTCATGACGCCACCACGCCGGCT-ACTGACAAACACCTCCCTCCCGCCGCCCCAGGAGCCGCCGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84184530 121 + 92844088 CCA-----GGACCGC---------GGCCCCGCCCCGGAAGACGCGGACGT-AGGGAG---CCGGGGCGGCGCCGCTGCTCTCGTGACGTCACTACGCCGGCC-AGTGACAAACA----CCTCCCACCGCCCCAGGAGCCGCCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87529379 121 - 96509753 CCA-----GGACCGC---------GGCCCCGCCCCGGAAGACGCGGACGT-AGGGAG---CCGGGGCGGCGCCGCTGCTCTCGTGACGTCACTACGCCGGCC-AGTGACAAACA----CCTCCTACCGCCCCAGGAGCCGCCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7018159 121 - 13098629 CCA-----GGACCGC---------GGCCCCGCCCCGGAGGACGCGGACGT-AGGGAG---CCGGGGCGGCGCCGCTGCTCTCGTGACGTCACTACGCCGGCC-AGTGACAAACG----CCTCCCACCGCCCCAGGAGCCGCCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3990046 121 - 4483953 CCA-----GGACCGC---------GGCCCCGCCCCTGAGGACGCGGACGT-AAGGAG---CCGGGGCGGTGCCGCTGCTCTCGTGACGTCATCACGCCGGCC-AGTGACAAACA----CCTCCCACCGCCCCAGGAGCCGCCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24616423 121 + 33263144 CCA-----GGACCGC---------GGCCCCGCCCCAGAGGACGCGGACGT-AGGAAG---CCGGGGCGGTGTCGCTGCTCTCGTGACGTCACCACGCCGGCC-AGTGACAAACA----CCTCCCACCGCCCCAGGAGCCGCCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13886972 121 - 14338769 CCA-----GGACCGC---------GGCCCCGCCCCGGAGGACGCGGACGT-AAGGAG---CCGGGGCGGTGCCGCTGCTCTCGTGACGTCACCACGCCGGCC-AGTTACAAACA----CCTCCCACCGCCCCAGGAGCCGCCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 833287 121 + 1946073 CCA-----GGACCGC---------GGCCCCGCCCCGGAGGACGCCGACGT-AGGGAG---CTGGGGCGGCACCGCTGCTCTCGTGACGTCACCACGCCGGCC-AGTGACAAACG----CCTCCCACCGCCCCAGGAGCCGCCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1872106 110 - 2117846 CCT-----GGACTGC--------TGGCTTTG----------------CAG-ACGCAG---CTGGGGCGGCCGCGCAGCTCTTGTAACGTCACCACGTAGGCC-GGTGACAAACACCTCCCTCTGGCCGCCCCAGGAGGCGCCGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8791374 124 - 16357246 CCC-----GAACTGC---------GGCCCTGCCCAGCAGGACGCGAACAG-ACGCAG---CTGGGGCGG-CGCGCCGCTCTCGTAACGTCACCACGTAGGCC-GGTGACAAACACCTCCCTCTGGCCGCCCCAGGAGGCGCCGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1266175 124 - 1807191 CCT-----GGACTGC---------GGCCCTGCCCAGCAGGACGCGAACAG-ATGCAG---CT-GCGCGGCTGCGCCGCTCTCGTAACGTCACCACGTAGGCC-GGTGACAAACACCTCCCTCTGGCCGCCCCAGGAGGCGCCGG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36237616 124 - 42659167 CCACCCGGGGGTTGC---------GGCCCCGCCCACTGAAACCCGGAAGGAAGGGAG---AAGTGGGGTCGGGTTCGGTCTGGTGACGTCACCATGTCGGGC-GGTAACAA-------GCTCTCAACGCCGCAGGAACTGCGGC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46034375 136 - 69331447 CCA-----GGACCGCCCGCCCGACGACCCCGCCCCGCCG--CCCGGAACG-AGGAGGCTACCGGGGCGTCGGCGCTCCCCGCGTGACGTCTCCACGTCGGGCGGGTGACCAACGCCCCCTTCGAAGCGCCGCAGGAACTAGGCG i canFam3.chr10 I 412 C 0 e proCoq1.NW_012136747v1 4983527 923 - 6317780 I e micMur3.chr7 5622322 1280 + 108171978 I a score=36833.000000 s hg38.chr22_GL383582v2_alt 1975 3 + 162811 CAC s panTro5.chr22 28755133 3 + 37823149 CAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41057285 3 + 50109623 CAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3032198 3 + 4464012 CAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106562021 3 - 115148730 CAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84184651 3 + 92844088 CAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87529500 3 - 96509753 CAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7018280 3 - 13098629 CAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3990167 3 - 4483953 CGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24616544 3 + 33263144 CAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13887093 3 - 14338769 CGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 833408 3 + 1946073 CGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1872216 3 - 2117846 CAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8791498 3 - 16357246 CAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1266299 3 - 1807191 CAC i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4984450 3 - 6317780 CAC i proCoq1.NW_012136747v1 I 923 C 0 s otoGar3.GL873526 36237740 3 - 42659167 CAC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46034511 3 - 69331447 CAT i canFam3.chr10 C 0 C 0 e micMur3.chr7 5622322 1280 + 108171978 I a score=5046169.000000 s hg38.chr22_GL383582v2_alt 1978 379 + 162811 TGCGCGAGTGGGAGGGCTGGGCTTCTCGTGTACTCCTCAAACTCTCGCGAGGCTTCGGGCGGCTTTCTTCCCGAGGGCGGCACGAGGGCTGGGCGGTGGGGTGCGGGTGCCCGGGTGAGGGGCGGAGCTGGGGGCATGGCGTCCGGAGCGGCTCGCTGGCTAGTATTGGCACCCGTCAGGTCCGGGGCTCTCCGGAGCGGGCCTAGCTTGAGGAAAGATGGCGATGTCTCCGCCGCATGGAGCGGCTCAGGCCGGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAGTGAGTGTCCTCCTGGAGACGGGGCGAAGGGGCTGAGGCCAATCATTGTGGGGAGTGC s panTro5.chr22 28755136 379 + 37823149 TGCGCGAGTGGGAGGGCTGGGCTTCTCGTGTACTCCTCAAACTCTCGCGAGGCTTCGGGCGGCTTTCTTCCCGAGGGCGGCACGAGGGCTGGGTGGTGGGGTCCGGGTGCCCGGGTGAGGGGCGGAGCTGGGGGCATGGCGTCCGGAGCGGCTCGCTGGCTACTATTGGCACCCGTCAGGTCCGGGGCTCTCCGGAGCGGGCCTAGCTTGAGGAAAGATGGCGATGTCGCCGCCGCATGGAGCGGCTCAGGCCGGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAGTGAGTGTCTTCCTGGAGACGGGGCGAAGGGGCTGAGGCCAATCATTGTGGGGAGTGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41057288 379 + 50109623 TGCGCGAGTGGGAGGGCTGGGCTTCTCGTGTACTCCTCAAACTCTCGCGAGGCTTCGGGCGGCTTTCTTCCCGAGGGCGGCACGAGGGCTGGGTGGTGGGGTCCGGGTGCCCGGGTGAGGGGCGGAGCTGGGGGCATGGCGTCCGGAGCGGCTCGCTGGCTACTATTGGCACCCGTCAGGTCCGGGGCTCTCCGGAGCGGGCCTAGCTTGAGGAAAGATGGCGATGTCGCCGCCGCATGGAGCGGCTCAGGCCGGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAGTGAGTGTCTTCCTGGAGACGGGGCGAAGGGGCTGAGGCCAATCATTGTGGGGAGTGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3032201 379 + 4464012 TGCGCGAGTGGGAGGGCTTGGCTTCTCGTGTACTCCTCAAACTCTCGCGAGGCTTCGGGCGGCTTTCTTCCCGAGGGCGGCACGAGGGCTGGGCGGTGGGGTCCGGGTGCCCGGGTGAGGGGCGGAGCTGGGGGCATGGCGTCCGGAGCGGCTCGCTGGCTAGTATTGGTACCCGTCAGGTCCGGGGCTCTCCGGCGCGGGCCTAGCTTGAGGAAAGATGGCGATGTCGCTGCCGCATGGAGCGGCTCAGGCCGGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAGTGAGTGTCTTCCTGGAGACGGGGCGAAGGGGCTGAGGCCAATCATTGTGGGGAGTGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106562024 379 - 115148730 TGCGCGAGTGGGGGGGCTGGGCCTCTCGTGTACTCCTCAAACTCCCGCGAGGCTTCGGGCGGCTTTCTTCCCGAGGGCGGCACCAGGGCCGGGCGGTGGGGTCCGGGTGCTCGGGTGAGGGGCGGAGCTGGGGGCATGGCGTCCGGAGCGGCTCGCTGGCTAGTACTGGCACCCCTCAGGTCCGGGGCTCTCCGGAGCGGGCCTAGCTTGAGGAAAGATGGCGATGTCGCCGCCGCACGGAGCGGTTCAGGCCAGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAGTGAGTGTCTTCCTGGAGACGGGGCGAAGGGGCTGAGGCCAATCATTGCGGGGAGTGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84184654 379 + 92844088 TGCGCGAATGCGAGGGCTGGGCTTCTCGTGTGCTCCTCAAAGTCTCGCGAGGCTTCGGGCGGCGTTCTTCCCGAGGGCGGCACCGGGGCCGGGCGGTGGGGTCCGGGTGCCCTGGTGAGGGGCGGAGCTGGGGGCATGGCGTCCGGAGCGGCTCGCTGGCTAGCACTGGTACCAGTCAGGTCCGGGGCTCTCCGAAGCGGTCCTAGCTTGAGGAAAGATGGCGATGTCGCCGCAGCACGGAGTGGCTTAGGCCAGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTACCCAAACCGGTGAAAGTGAGTGTCTGCCTGGAGACGGGGTGAAGGGGCTGAGGCCAATCATTGTGGGGAGTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87529503 379 - 96509753 TGCGCGAATGCGAGGGCTGGGCTTCTCGTGTGCTCCTCAAAGTCTCGCGAGGCTTCGGGCGGCGTTCTTCccgagggcggcaccggggccgggcggtggggtccgggtgccctggtgaggggcggagctgggAGCATGGCGTCCGGAGCGGCTCGCTGGCTAGCACTGGTACCAGTCAGGTCCGGGGCTCTCCGAAGCGGTCCTAGCTTGAGGAAAGATGGCGATGTCGCCGCAGCACGGAGTGGCTTAGGCCAGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTACCCAAACCGGTGAAAGTGAGTGTCTGCCTGGAGACGGGGTGAAGGGGCTGAGGCCAATCATTGTGGGGAGTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7018283 379 - 13098629 TGCGCGAATGCGAGGGCTGGGCTTCTCGTGTGCTCCTCAAAGTCTCGCGAGGCTTCGGGCGGCGTTCTTCCTGAGGGCGGCACCGGGGCCGGGCGGTGGGGTCCGGGTGCCCTGGTGAGGGGCGGAGCTGGGGGCATGGCGTCCGGAGCGGCTCGCTGGCTAGCACTGGTACCAGTCAGGTCCGGGGCTCTCCGAAGCGGGCCTAGCTTGAGGAAAGATGGCGATGTCGCCGCAGCACGGAGTGGCTTAGGCCAGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAGTGAGTGTCTGCCTGGAGACGGGGTGAAGGGGCTGAGGCCAATCATTGTGGGGAGTGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3990170 379 - 4483953 TGCGCGACTGCGAGGGCTGGGCTTCTCGTGTGCTCCTCAAAGTATCGCGAGGCTTCGGGCGGCGTTCTTCCCGAGGGCGGCACCGGGGCCGGGCGGCGGGGTCCGGGTGCCCTGGTGAGGGGCGGAGCTGGGGGCATGGCGTCCGGAGCGGCTCGCTGGCTAGCACTGGCACCAGTCAGGTCCGGGGCTCTCCGAAGCGGGCCTAGCTTGAGGAAAGATGGCGATGTCGCCGCCGCACGGAGTGGCTTAGGCCAGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCAGTGAAAGTGAGTGTCTGCCTGGAGACGGGGTGAAGGGGCTGAGGCCAATCATTGTGGGGAGTGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24616547 379 + 33263144 TGCGAGAATGCGAGGGCTGGGCTTCTCGTGTGCTCCTCAAAGTCTCGCGAGGCTTCGGTCAGCGTTCTTCCCGAGGGCGGCACCCGGGCCGGGCGGTGGGGTCCGGCTGCCCTGGTGAGGGGCGGAGCTGGGGGCATGGCGTCCGGAGCGGCTCGCTGGCTAGCACTGGCACCAGTCAGGTCCGGGGCTCTCCGAAGCAGGCCTAGCTTGAGGAAAGATGGCGATGTCGCCGCCGCACGGAGTGGCTTAGGCCAGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAGTGAGTGTCTGCCTGGAGACGGGGTGAAGGGGCTGAGGCCAATCATTGTGGGGAGTGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13887096 379 - 14338769 TGCGCGACTGCGAGGGCTGGGCTTCTCGTGTGCTCCTCAAAGTCTCGCGAGGCTTCGGGCGGCGTTCTTCCCGAGGGCGGCACCGGGGCCGGGCGGCGGGGTCCGGGTGCCCTGGTGAGGGGCGGAGCTGGGGGCATGGCGTCCGGAGCGGCTCGCTGGCTAGCACTGGCACCAGTCAGGTGCGGGGCTCTCCGAAGCGGGCCTAGCTTGAGGAAAGATGGCGATGTCGCCGCCGCACGGAGTGGCTTAGGCCAGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAGTGAGTGTCTGCCTGGAGATGGGGTGAAGGGGCTGAGGCCAATCATTGTGGGGAGTGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 833411 379 + 1946073 TGCGCGAATGGGAGGGCTGGGCCTCTCGTGTGCTCCTCAAAGTCTCGCGAGGCTTCGGGCGGTGTTCTTCCCGAGGGTGGCACCGGGGCCGGGCGGTGGGGTCCGGGTGCCTGGGTGAGAGGCGGAGCTGGGGGCATGGCGTCCGGAGCGGCTCGCTGGCTAGCACTGGCACCAGTCAGGTCCGGGGCTCTCCGAAGCGGGCCTAGCTTGAGGAAAGATGGCGATGTCGCCGCCGCACGGAGTGGCTTAGGCCAGAGCCTGCTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAGTGAGTGTCTGCCTGGAGACGGGGCGAAGGGGCTGAGGCCAATCATTGTGGGGAGTGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1872219 371 - 2117846 TACGCGAGTTGAG----TGGGCTTCTCGTGTGCTCCTCAAAGTCTCGCGAGGCTTCGAGCGGCGTTCTTCCCGAGGGCGGCACCGGGGCCGGGCGGTGGGGTTCGGGTGCCCGGGCGAGGGGCGGAGCTGCGGG-ATGGCGTCCGGAGCGGCTCGCTGGCTAGCGTTGGCAGCCGTCAGGTCTGGGGTTTTCCGGAGCGGGCCTAGCTTGAGGAAAGGTGGCGATGCCGCCGCGGCACGGAGCGACCCAGGCCGGAGCCTCGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCAGTCAAAGTGAGTGTCTTCCTGGAAACGGGGCGAAGGGGCTGAGGCCA---ATTGTGGGGAATGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8791501 374 - 16357246 TAAGCGAGTTGAA----TGGGCTTCTCGTGTGCTCCTCGAAGTCTCGCGAGGCTTCGAGCGGCGTTCTTCCCGAGGGCGGCACCGGGGCCGGGCGGTGGGGTCCGGGTGCCCGGGCGAGGGGCGGAGCTGCGGG-ATGGCGTCCGGAGCGGCTCGCTGGCTAGCGTTGGCAGCCGTCAGGTCCGGGGTTCCCCGGAGCGGGCCTAGCTTGAGGAAAGGTGGTGATGTTGCCGCGGCACGGAGCGACCCAGGCCGGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCAGTCAAAGTGAGTGTCTTCCTGGAGACGGGGCGAAGGGGCTGAGGCCAATCATTGTGGGGAATGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1266302 374 - 1807191 TACGCGGGTTGAG----TGGGTTTCGCGTGTGCTCCTCAAAGTCTCGCGAGGCTTCGAGCGGCGTTCTTCCCGAGGGCGGCACCGGGGCCAGGCGGTGGGGTCCGTGTGCCCGGGCGAGGGGCGGAGCTGCGGG-ATGGCGTCCGGAGCGGCTCGCTGGCTAGCGTTGGCAGCCGTCAGGTCCGGGGTTCTCCGGAGCGGGCCTAGCTTGAGGAAAGGTGGCGATGTCGCCGCGGCACGGAGCGACCCAGGCCGGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCAGTCAAAGTGAGTGTCTTCCTGGAGACGGGGCGAAGGGGCTGAGGCCAATCATTGTGGGGAATGC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5623602 364 + 108171978 TGCGCAAGTGTGAGGGCTGGGCTTCTCGTGTGCTCC-AG-AGCCTCGCGAGGCTGGAGGCGACGTTCTTCCTGAGGGCGGCACCGGCGTCGGGCGGTGAGGTCCGGGTGTCCAGGCGAGGGGCGGAGCTGGGAG-ATGGCGTCCGGAGTGGCTCGCTGGCTACCACTGGCACCCGTCCGATTCTGGGCTCTCCGGAGCGGGCCAAGCTTGAGGAAAGGTGGCAATGACG------------GCGCCTCAGGTCAGAGCCTAGTGCCGTCGCGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAGTGAGTGTCTGCCGGGAGGCGGGGTAAAGGGGCCGAGGCCAATTGCTGTGTGGAGTGC i micMur3.chr7 I 1280 I 165 s proCoq1.NW_012136747v1 4984453 365 - 6317780 TGCGCAAGTGTGAGGTCTGGGCTTCTCGTGTGCTCC-AGAAGCCTCGCGAGGCTTGAGGCGACATTCTTCCTGAGGACGGCACCGGCGTCGGACAGTGGGGTCCGGGTGCCCGGGCGAGGGGCGGAGCTGGGAG-ATGGTGTCCGGAGCAGCTCGCTGGCTACCACTGGTACCCGTCCGATTCTGGGCTCTCCGGAGCGGGCCAAGCTTGAGGAAAGGTGGCAATGACG------------GCGGCTCAGGTCAGAGCCTAGTGCCGTCGCGGTCAGTCATCGCTACGCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAGTGAGTGTCTGCCTGGAGGCGGGGTGAAGGGGCCGAGGCCAATTGTTGTGGGGAGTGC i proCoq1.NW_012136747v1 C 0 I 52 s otoGar3.GL873526 36237743 364 - 42659167 TGCGCAAGTGTGAGGGCTGGGCTTCTCGGGTGCTCC-AAAAGCCTCGCGAGGCTTGAGACGGCGTTCTTCCTGAGGGCCGCACCGGCTTCGTTCCGTGGGGTCCGGGTGTTTGGGTT-GGGGCGAAGCTGGGAG-ATGGCGTCCGGAGCGGCTCGCTGGCTAGCACTGGGACCCGTCCGATCCCGAGCTTTCTGGGGTGGGCCAAACTTGAGGAAACGTGGCAATGCCG------------GCGGCTCAGGTCAGAACTTGGTGCCGTCGAGGTCAGTCATCGTTACCCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAGTGAGTGTCTGCTTGGAGGCGGGGCGAAGGGGCCGAGGCCAATTGTTGAGGGGCGTGC i otoGar3.GL873526 C 0 I 2 s canFam3.chr10 46034514 375 - 69331447 TGCGC-CGTGGGGGGGTTGGGCCTCGCGTCTCATCCCAGAAGCATCGCGAGGCTTGGGGCGGTGCTCTCGCGGAGGGCGTCACAGGAGCCGGGCGCCGGGGTCCGGGTG-CCGGGCTAGGGGCGGAGCTGGGAA-ATGGCGTCCGGAGCGGCTCGCTGGCTGGCATTGGCATCCGTCCGATCCGGGGTTTTCCGGAGCGGGCCGAGGCTGAGGAAAGGTGGCGATGTCTCCGCCGGAGGGGGTGGCTCAGGTCGGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACTCGCAGCGGCGCCATTTTGCCCAAACCGGTGAAAGTGAGTGTCTGCCTGGAGGCGGGGCGAAGGGGCCGAGGCCAATCAC-ATGGGGTGTGT i canFam3.chr10 C 0 C 0 a score=511318.000000 s hg38.chr22_GL383582v2_alt 2357 51 + 162811 GTGAGGG-CGGCGCTGATTGATAGGAGCCAAGGCCAATCATAACGATTACCG s panTro5.chr22 28755515 51 + 37823149 GTGAGGG-CGGCGCTGATTGATAGGAGCCAAGGCCAATCATAACGATTACCG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41057667 51 + 50109623 GTGAGGG-CGGCGCTGATTGATAGGAGCCAAGGCCAATCATAACGATTACCG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3032580 50 + 4464012 GTGAGGG-CGGCGCTGATTGATAGGAGCCAAGGCCAATCATAACGA-TACCG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106562403 51 - 115148730 GTGAGGG-AGGCGCTGATTGACAGGAGCCAAGGCCAATCATAACGATTACCG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84185033 51 + 92844088 GTGAGGG-CGGCGCTGATTGACGGGAGCGAAGGCCAATCATAACGACTACCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87529882 51 - 96509753 GTCAGGG-CGGCGCTGATTGACGGGAGCGAAGGCCAATCATAACGACTACCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7018662 51 - 13098629 GTGAGGG-CGGCGCTGATTGACGGGAGCGAAGGCCAATCATAACGACTACCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3990549 51 - 4483953 GTGAGGG-CGGCGCTGATTGACGGGAGCCAAGGCCAATCATAACGACTACCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24616926 51 + 33263144 GTGAGGG-CGGTGCTGATTGACGGGAGCCAAGGCCAATCATAACGACCACCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13887475 51 - 14338769 GTGAGGG-CGGCGCTGATTGACGGGAGCCAAGGCCAATCATAACGACTACCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 833790 51 + 1946073 GTGAGGG-CGGCGCTGATTGACGGGAGCCAAGGCCAATCATAACGATTACCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1872590 51 - 2117846 GTGCGGG-CGGCGCTGATTGACTGGAGCCAAGGCCAATCATAACGATTACCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8791875 51 - 16357246 AGGCGGG-CGGCGCTGATTGACTGGAGCCAAGGCCAATCATAACGATTACCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1266676 51 - 1807191 GTGCGGG-CGGCGCTGATTGACTGCGGCCAAGGCCAATCATAACGATTGCCT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36238109 50 - 42659167 GGCGGGC-CGACGCTGATTGACGGGAGTAGAGGCCAATCGT-ACGATCGTCT i otoGar3.GL873526 I 2 C 0 s canFam3.chr10 46034889 51 - 69331447 GCGCGGGTCGACGCTGATTGATAGGAGCAAAGGCCAATCAT-ACGACCGCCT i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4984818 52 - 6317780 I e micMur3.chr7 5623966 165 + 108171978 I a score=269607.000000 s hg38.chr22_GL383582v2_alt 2408 21 + 162811 TAGACTGGAAGGCGGACCAAG s panTro5.chr22 28755566 21 + 37823149 TAGACTGGAAGGCGGACCAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41057718 21 + 50109623 TAGACTGGAAGGCGGACCAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3032630 21 + 4464012 TAGACTGGAAGGCGGACCAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106562454 21 - 115148730 TAGACTGGAAGGCGGACCAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84185084 21 + 92844088 TAGACTGGAAGGCGGACCAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87529933 21 - 96509753 TAGACTGGAAGGCGGACCAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7018713 21 - 13098629 TAGACTGGAAGGCGGACCAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3990600 21 - 4483953 TAGACTGGAAGGCGGACCAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24616977 21 + 33263144 TAGACTGGAAGGCGGACCAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13887526 21 - 14338769 TAGACTGGAAGGCGGACCAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 833841 21 + 1946073 TAGACTGGAAGGCGGACCAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1872641 21 - 2117846 TAGAGTGGAAGGCGGGCCAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8791926 21 - 16357246 TAGAGTGGAAGGCGGGCCAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1266727 21 - 1807191 TAGAGTGGAAGGCGGGCCGAA i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4984870 21 - 6317780 TAGACTGGAAGGCGGACCAAG i proCoq1.NW_012136747v1 I 52 I 246 s otoGar3.GL873526 36238159 21 - 42659167 TAGACTGCGAGGCGGACCGAA i otoGar3.GL873526 C 0 I 4 s canFam3.chr10 46034940 21 - 69331447 TAGACCGGAAGACGGATCAAG i canFam3.chr10 C 0 C 0 e micMur3.chr7 5623966 165 + 108171978 I a score=584579.000000 s hg38.chr22_GL383582v2_alt 2429 62 + 162811 AAT--------ACGCTAATGAGTTGCTAATT------TTGACAGGT---------GTGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG s panTro5.chr22 28755587 62 + 37823149 AAT--------ACGCTAATGAGTTGCTAATT------TTGACAGGT---------GTGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41057739 62 + 50109623 AAT--------ACGCTAATGAGTTGCTAATT------TTGACAGGT---------GTGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3032651 62 + 4464012 AAT--------ACGCTAATGAGTTGCTAATT------TTGACAGGT---------GTGTAGAAAATGGTA-------------------------GGTAGATAGAAGATG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106562475 62 - 115148730 AAT--------ACGCTAATGAGTTGCTAATT------TTGACAGGT---------GTGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84185105 66 + 92844088 AATAAAT----ACGCTAATGAGTTGCTAATT------TTGACAGGT---------GTGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87529954 66 - 96509753 AATAAAT----ACGCTAATGAGTTGCTAATT------TTGACAGGT---------GTGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7018734 66 - 13098629 AATAAAT----ACGCTAATGAGTTGCTAATT------TTGACAGGT---------GTGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3990621 66 - 4483953 AATAAAT----ACGCTAATGAGTTGCTAATT------TTGACAGGT---------GTGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24616998 67 + 33263144 AATAAAT---AACGCTAATGAGTTGCTGATT------TTGACAGGT---------GTGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13887547 66 - 14338769 AATAAAT----ACGCTAATGAGTTGCTAATT------TTGACAGGT---------GTGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 833862 66 + 1946073 AGTAAAT----ACGCTAATGAGTTGCTAATT------TTGACAGGT---------GTGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1872662 66 - 2117846 AATAAAT----GCGCTAAGGTGTTGCTAATT------TTGACAGGT---------GGGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8791947 66 - 16357246 AATAAAT----GCGCTAATGAGTTCCTAATT------TTGACAGGT---------GGGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1266748 66 - 1807191 AATAAAT----GCGCTAATGAGTTGCTAATT------TTGACAGGT---------GGGTAGAAAATGGTA-------------------------GGTAGACAGAAGATG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36238184 80 - 42659167 AATTTTT----GCGCTAAT--GTTGATTATTAGCGAAGTGGTCGGTTAGAACCCAGTGTTGAGCTGGGTG-----------------------CTGGGGGACAGAAGAT- i otoGar3.GL873526 I 4 C 0 s canFam3.chr10 46034961 94 - 69331447 GACAAAGTTTAGCGCTAATGCGCTGCTAAAT------TTGACAGGT---------GGGAGGAAACGGGTCGGATCCCGGTGTTGAGTTGGGCGCCGGGAGACCGAGGAC- i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4984891 246 - 6317780 I e micMur3.chr7 5623966 165 + 108171978 I a score=1211720.000000 s hg38.chr22_GL383582v2_alt 2491 133 + 162811 GGGGGCAAACGCTGA--GGAAGTTGGCCTTTTACATTAGCTTGTCCTGAGAG--GTGCGGTGCTCTGCTCCTCTGGAGTCAGAAGACTAGGCCGTGTGCTTCTAGCTTAGAGC--------------------------------------------AGTCCTGtaatctctg--------ccctgcct s panTro5.chr22 28755649 133 + 37823149 GGGGGCAAACGCTGA--GGAAGTTGGCCTTTTACATTAGCTTGTCCTGAGAG--GTGCGGTGCTCTGCTCCTCTGGAGTCAGAAGACTAGGCCGTGTGCTTCTAGCTTAGAGC--------------------------------------------AGTCCTGtaatctctg--------ccctgcct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41057801 133 + 50109623 GGGGGCAAACGCTGA--GGAAGTTGGCCTTTTACATTAGCTTGTCCTGAGAG--GTGCGGTGCTCTGCTCCTCTGGAGTCAGAAGACTAGGCCGTGTGCTTCTAGCTTAGAGC--------------------------------------------AGTCCTGtaatctctg--------ccctgcct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3032713 133 + 4464012 GGGGACAAACGCTGA--GGAAGTTGGCCTTTTACATTAGCTTGTCCTGAGAG--GTGCGGTGCTCTGCTCCTCTGGAGTCAGAAGACTAGGCCGTGTGCTTCTAGCTTAGACC--------------------------------------------AGTCCTGtaatctctg--------ccctgcct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106562537 133 - 115148730 GGGGGCAAACGCTGA--GGAAGTTGGCCTTTTACATTAGCTTGTCGTGAGAG--GTGCGGTGCTCTGCTCCTCTGGAGTCAGAAGACTAGGCCGTGTGCTTCTAGCTTAGACC--------------------------------------------AGTCCTGtaatgtctg--------ccctgcct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84185171 133 + 92844088 GGGGGAAAACGCTGA--GGAAGATGGCCTTTCACATTAGTTTGTCATGAGAG--GTGGGGTGCTCTGCACCTCTGGAGTCAGAAGACTAGGCCGTGTGCTTCTAGCTTAGACC--------------------------------------------AGTCCTGtaatctctg--------ccctgcct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87530020 133 - 96509753 GGGGGAAAACGCTGA--GGAAGATGGCCTTTCACATTAGTTTGTCATGAGAG--GTGGGGTGCTCTGCACCTCTGGAGTCAGAAGACTAGGCCGTGTGCTTCTAGCTTAGACC--------------------------------------------AGTCCTGtaatctctg--------ccctgcct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7018800 133 - 13098629 GGGGGAAAACGCTGA--GGAAGATGGCCTTTCACATTAGCTTGTCCTGAGAG--GTGGGGTGCTCTGCACCTCTGGAGTCAGAAGACTAGGCCGTGTGCTTCTAGCTTAGACC--------------------------------------------AGTCCTGtaatctctg--------ccctgcct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3990687 135 - 4483953 GGGGGAAAACGCTGA--GGAAGATGGCCTTTCACATTAGCTTGTCCTGAGAGGTGTGGGGTGCTCTGCACCTCTGGAGTCAGAAGACTAGGCCGTGTGCTTCTAGCTTAGACC--------------------------------------------AGTCCTGtaatctctg--------ccctgcct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24617065 133 + 33263144 GGGGGAAAACGCTGA--GGAAGATGGCCTTTCACATTAGCTTGTCCTGAGAG--GTGGGGTGCTCTGCACCTCTGGAGTCAGAAGACTAGGCCGTGTGCTTATAGCTTAGACC--------------------------------------------AGTCCTGtaatctctg--------ccctgcct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13887613 135 - 14338769 GGGGGAAAACGCTGA--GGAAGATGGCCTTTCACATTAGCTTGTCCTGAGAGGTGTGGGGTGCTCTGCACCTCTCGAGTCAGAAGACTAGGCCGTGTGCTTCTAGCTTAGACC--------------------------------------------AGTCCTGtaatctctg--------ccctgcct i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 833928 134 + 1946073 GGGGGAAAACGCTGAGGGGAAGATGGCTTTTCACATTAGCTTGTCCTGAGAG--GTGGGGTGCTCTGCTCCTCTGGAGTCAGAAGACTAGGCCGTGCGCTTCTAGCTTAGACC--------------------------------------------AGTCCTGtaatctctg--------ccttgcc- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1872728 174 - 2117846 GGG--CAAACGCTTA--GGAAGATGATCTTTTACATTAGCTTATCCTGAGAG--GTATGGTGCGCTGCTCCTCTGGAGTC-GAAGACTCGGCCCTGTGCATCTAGCTTAGACTGTAATCTAAATCCTGTAATCTCTGCCCTCCCTGTAATCTAGTTTAGTCCTGtaatctctg--------ccctgcct i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8792013 140 - 16357246 GGGA-CAAAGGCTGA--GGAAGATGACGTTTTACATTAGCTTATTCTGAGAG--GTACGGTGCGGTGCTCCTCTGGAGTCAGAAAACTCGGCCCTGTGCATCTAGCTTAGACTGTAATCTAAA------------------------------------TCCTGtaatgtctg--------ccctgcct i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1266814 175 - 1807191 GGGG-CAAACGCTGA--GGAAGATGACCTTTTACATTAGATTATCCTGAGAG--GTACGGTGCAGTGCTCCTCTGGAGTCAGAAAACTTGGCCCTGTGCATCTAG-TTAGACTGTAATCTAAATCCTGTAATCTCTGCCCTCCCTGTAATCTGTTTTAGTCCTGtaatctctg--------ccctgcct i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5624131 133 + 108171978 GGGGGCAAAAGCTGA--GAAAGATGGCATCTTGCAGTAGCTTCTCGTAAGGG--GTGCGGTGCCCTATTCCTCTGGAGTCAGAAGACTCAGCTTTGTGCATCCAGTTTAGACA--------------------------------------------AGTCATGTAATCTCTG--------CTCTGCCT i micMur3.chr7 I 165 I 24 s otoGar3.GL873526 36238264 105 - 42659167 GGGGGCAAAAGC-GA--GAAAGATGGCATTTTGCAGTAGTTTCTCAT-----------------------------------AAGACTCGGCTTTGTGCGTCCAGTTTCGATA--------------------------------------------AGTGATGTAATTTGGACAAGTAATCTCTGC-- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46035055 115 - 69331447 GGGGGCGAGAGCTGA--GGAGGACTGCACTCTGCACTAGCGCATCGTGAGGA--GCGTGGAGCCCAGTG--TTCAGGGCCACAAGGCGCGGCTTTGCGCACCCAGTATAGACA--------------------------------------------AATCACGT------------------------ i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4984891 246 - 6317780 I a score=252284.000000 s hg38.chr22_GL383582v2_alt 2624 24 + 162811 gtctcctagtttatgggatgaaat s panTro5.chr22 28755782 24 + 37823149 gtctcctagtttatgggatgaaat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41057934 24 + 50109623 gtctcctagtttatgggatgaaat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3032846 24 + 4464012 gtctcctagtttatgggatgaaat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106562670 24 - 115148730 gtctcctagtttatgagatgaaat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84185304 24 + 92844088 gtctcctagtttatgggatgaaat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87530153 24 - 96509753 gtctcctagtttatgggatgaaat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7018933 24 - 13098629 gtctcctagtttatgggatgaaat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3990822 24 - 4483953 gtctcctagtttatgggatgaaat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24617198 24 + 33263144 gtctcctagtttatgggatgaaat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13887748 24 - 14338769 gtctcctagtttatgggatgaaat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 834062 23 + 1946073 -tctcctagtttatgggatgaaat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1872902 24 - 2117846 gtctcctagtttatgggatgaaat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8792153 24 - 16357246 gtctcctagtttatgggatgaaat i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1266989 24 - 1807191 gtctcctagtttatgggatgaaat i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36238369 24 - 42659167 ATCGTACAGTTGATGTAATGAAAT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46035170 19 - 69331447 ---TCGCGGTTGATGGGGTGGA-- i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4984891 246 - 6317780 I e micMur3.chr7 5624264 24 + 108171978 I a score=12376.000000 s hg38.chr22_GL383582v2_alt 2648 1 + 162811 a s panTro5.chr22 28755806 1 + 37823149 a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41057958 1 + 50109623 a i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3032870 1 + 4464012 a i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106562694 1 - 115148730 a i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84185328 1 + 92844088 a i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87530177 1 - 96509753 a i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7018957 1 - 13098629 a i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3990846 1 - 4483953 a i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24617222 1 + 33263144 a i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13887772 1 - 14338769 a i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 834085 1 + 1946073 a i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1872926 1 - 2117846 a i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8792177 1 - 16357246 a i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1267013 1 - 1807191 a i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4985137 1 - 6317780 a i proCoq1.NW_012136747v1 I 246 C 0 s canFam3.chr10 46035189 1 - 69331447 A i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36238393 0 - 42659167 C e micMur3.chr7 5624264 24 + 108171978 I a score=4007819.000000 s hg38.chr22_GL383582v2_alt 2649 345 + 162811 tgaattttgaaaggactctgtaaataaagGGTACGTGGGACGGGCCTCATCTTTTTATTAGTTGTCACCTAATATttaattcatgtgatttacagtcctgatagatgtgcagggaattattacaatcacgggtttt-caaatgaagaatc--gggctagagcggtgaagctcgta----tccaaggccaGC-GC---TGA----GGACGCAGCATCCGGGTTTCTTCCTGGTACCGTCC-CCACCAGGTCCTGTCTTTTT--CCAACACTGAACGCTATCACATG-----------CTTGAGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATATCAAGCGAAAGTTTGCTTTACGACTGCAGGGCTGTGTGG s panTro5.chr22 28755807 345 + 37823149 tgaattttgaaaggactctgtaaataaagGGTACGTGGGACGGGCCTCATCTTTTTATTAGTTGTCACCTAATATttaattcatgtgatttacagtcctgatagatgtgcagggaattattacaatcacgggtttt-caaatgaagaatc--gggctagagcggtgaagctcgta----tccaaggccagc-gc---tga----ggccgcagcatccgggtttcttcctggtaccgtcc-ccaccaggtcctgtcttttt--ccaACACTGAACGCTATCACATG-----------CTTGAGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATATCAAGCGAAAGTTTGCTTTACGACTGCAGGGCTGTGTGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41057959 345 + 50109623 tgaattttgaaaggactctgtaaataaagGGTACGTGGGACGGGCCTCATCTTTTTATTAGTTGTCACCTAATATttaattcatgtgatttacagtcctgatagatgtgcagggaattattacaatcacgggtttt-caaatgaagaatc--gggctagagcggtgaagctcgta----tccaaggccagc-gc---tga----ggccgcagcatccgggtttcttcctggtatcgtcc-ccaccaggtcctgtcttttt--ccaACACTGAACGCTATCACATG-----------CTTGAGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATATCAAGCGAAAGTTTGCTTTACGACTGCAGGGCTGTGTGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3032871 344 + 4464012 tgaattttgaaaggactctgtaaaTAGAGGGTAC-TGGGACGGGCCTCATCTTTTTATTAGTTGTCACCTAATATttaattcatgtgatttacagtcctgatagatgtgcagggaattattacaatcacgggtttt-caaatgaagaaac--gggctagagcggtgaagctcatg----tccaaggccagc-gc---tga----ggccgcagcatccgggtttcttcctggtaccgtcc-ccaccaggtcctgtcttttt--ccaACACTGAACGCTATCACATG-----------CTTGAGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATATCAAGCGAAAGTTTGCTTTACGACTGCAGGGCTGTGTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106562695 345 - 115148730 tgaattttgaaaggactctgtaaataaagGGTACGTGGGACAGGCCTCATCTTTTTATTAGTTGTCACCTAGTATttaattcatgtgatttacagtcctgatatatgtgcagggaattattacaatcacggttttt-caaatgaagaatc--gggctagagcggtgaagctagta----tccaaggccaGC-GC---TGA----GGCCGCTGCATCCGGGTTTCTTCCTGGTACCGTCT-CCACCAGGTCCTATCTTTTT--CCAACACTGAACGCTATCACATG-----------CTTGGGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATATCAAACAAAAGTTTGCTTTACGACTGCAGGGCTGTGTGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84185329 340 + 92844088 tgaattgtgaaaggattctgtaaataaagGGTACGTGGGATGGGCCTCATCTTTTTATGAGTTGTCACCTAGT-----ATtcatgtgatttacagtcctgatagatgtgcagggaattattaaaatcacggttttt-caaatgaacaatc--gggctagagcggtgaagttagta----tccaaggccaTC-GC---TGA----GGCCGCAGCATCCGGGTTTCTTCCTGGTACCGTCC-CCATCAGGTTCTATCTTTTT--CCAACACTGAACGCTGTCACATG-----------CTTGAGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATATCCAACAAAAGTTTGCTTTAGCACTGCAGGGCTGTGTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87530178 340 - 96509753 tgaattgtgaaaggattctgtaaataaagGGTACGTGGGATGGGCCTCATCTTTTTATGAGTTGTCACCTAGT-----ATTCATGTGATTTACAGTCCTGATAGATGTGCAGGGAATTATTAAAATCACGGTTTTT-CAAATGAACAATC--GGGCTAGAGCGGTGAAGTTAGTA----TCCAAGGCCATC-GC---TGA----GGCCGCGGCATCCGGGTTTCTTCCTGGTACCGTCC-CCATCAGGTTCTATCTTTTT--CCAACACTGAACGCTGTCACATG-----------CTTGAGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATATCCAACAAAAGTTTGCTTTAGCACTGCAGGGCTGTGTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7018958 340 - 13098629 tgaattgtgaaaggattctgtaaataaagGGTACGTGGGATGGGCCTCATCTTTTTATGAGTTGTCACCTAGT-----ATTCATGTGATTTACAGTCCTGATAGATGTGCAGGGAATTATTAAAATCACGGTTTTT-CAAATGAACAATC--GGGCTAGAGCGGTGAAGTTAGTA----TCCAAGGCCATC-GC---TGA----GGCCGCAGCATCCGGGTTTCTTCCTGGTACCGTCC-CCATCAGGTTCTATCTTTTT--CCAACACTGAACGCTGTCACATG-----------CTTGAGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATATCCAACAAAAGTTTGCTTTAGCACTGCAGGGCTGTGTGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3990847 340 - 4483953 tgaattgtgaaaggattctgtaaataaagGGTACGTGGGACGGGCCTCATCTTTTTATGAGTTGTCAGCTAGT-----ATtcatgtgatttacagtcctgatagatgtgcagggaattattaaaatcacggttttt-caaatgaacaatc--gggctagagcggtgaagttaata----tccaaggccaTC-GC---CGA----GGCCGCAGCATCCGGGTTTCTTCCTGGTACCGTCC-CCATCAGGTTCTATCTTTTT--CCAACACTGAACGCTGTCACATG-----------CTTGAGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATATCCAACAAAAGTTTTCTTTAGCACTGCAGGGCTGTGTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24617223 339 + 33263144 ttaattgtgaaaggattctgtaaataaagGGTACGTGGGACGGGCCTCATCTTTTTATGAgttgtcacctagt-----attcatgtgatttacagtcctgctagatatgcagggaattattaaaatcacggttttt-caaatgaacaatc--gggctagagcggtgaagttagta----tccaaggccaTC-GC---TGA----GGCCGCAGCATCCGGGTTTCTTGCTGGTACCGTCC-CCATCAGGTTCTATCTTTTT--CTAACACTGAACGCTGTCACATG-----------CTTGAGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATATCCAACAAAAGTTTGCTTTAGTACTGCAGGGCTGT-TGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13887773 340 - 14338769 tgaattgtgaaaggattctgtaaataaagGGTACGTGGGACGGGCCTCATCTTTTTATGAGTTGTCACCTAGT-----ATTCATGTGATTTACAGTCCTGATAGATGTGCAGGGAATTATTAAAATCACGGTTTTT-CAAATGAACAATC--GGGCTAGAGCGGTGAAGTTAATA----TCCAAGGCCATC-GC---TGA----GGCCGCAGCATCCGGGTTTCTTCCTGGTACCGTCC-CCATCAGGTTCTATCTTTTT--CCAACACTGAACGCTGTCACAGG-----------CTTGAGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATATGCAACAAAAGTTTTCTTTAGCACTGCAGGGCTGTGTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 834086 340 + 1946073 tgaattgtgaaaggactctgtaaataaagGGTATGTGGGACGGGCCTTATCTTTTTATGAGTTGTCACCTAGT-----ATTCATGTGATTTACAGTCCTGACAGATGTACAGGGAATTATTAAAATCATGGTTTTT-CAAATGAACAATC--GGGCTAGAGCGGTGAAGTTAGTA----TCCAAGGCCATC-GC---TGA----GGCCTCAGCATCCGGGTTTCTTCCTGGTACCGTCC-CCATCAGGTTCTATCTTTTT--CCAACACTGAACGCTGTCACATG-----------ATTGAGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATATCCAACAAAAGTTTGCTTTAGCACTGCAGGGCTGTGTGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1872927 347 - 2117846 tgaattgtgaaaggactctgtaaacAAGGGGTACGTGGGACGGCCCTTATCTTTTTATGAGTTGTCACCTAGTATTTAATTCATGTGATTTACAGTCCTGATAGAGGTGCAGGGAATTGTTACAATCACGGTTTTTCCAAATGAAGAATC--GAGCTAGAGCTGTGAAGCCAATA----TCCAAGGCTTGC-GC---TGA----GGTCGCAGCGTCCTGGTTTCTTGCTGGTACTATCC-CAGCCAGGTCCTATCTTTTT--CCACCATTGAACGCTATCACATG---------CCCTTGAGT--TTTTCTATGGAAAACGGAAACAGTCCCTTATGGCAAAC-AAAGTTTGCTTTATGACTGCAGGGCTGTGTGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8792178 347 - 16357246 tgaattgtgaaaggactctgtaaacAAGGGGTACGTGGGACGCCCCTTATCTTTTTATGAGTCTCCACCTAGTatttaattcata-gatttacagccctgatagatgtgcagggaattattacaatcacggtttttccaaatgaagaatc--aggctagagctgtgaagccaata----tccaaggCTTGC-GC---TGA----GGCCGCAGCCTCCCGGTTTCTTGCTGTTACTGTCC-CGGCCAGGTCCTATTTTTTT--CCACCACTGAACGCTATCACATG---------CCCTTGAGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATAGCAAACAAAAGTTTGCTTTATGACTGCAGGGCTGTGTGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1267014 348 - 1807191 tgaattgtgaaaggactctgtaaacAAGGGGTACGTGGGACAGCCCTTATCTTTTTATGAGTTGTCACCTAGTATTTAATTCATGTGATTTACAGTCCTGATAGATGTGCAGGGAATTATTACAATCACGGTTTTTCCAAATGAAGAATC--GGGCTAGAGCTGTGAAGCCAATA----TCCAAGGCTTGC-GC---TGA----GACCGCAGCGTCCCGGTTTCTTGCTGATACTGTCC-TTGCCAGGTCCTATCTTTTT--CCACTACTGAACGCTATCACATG---------CCCTTGAGT--TTTTCTAGGGAAAACGGAAACAGTCCCTTATAGCAAACAAAAGTTTGCTTTATGACTGCAGGGCTGTGTGG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5624288 364 + 108171978 TGAATCGTGAAGGAATTTTGTAAATAAAGGGTATGTGGGACGGACCTTATCTTTTTATGAGTTGTCACTTGGTAGTTAATTCATGTGATATGCGGTCCTGAGAGATGTGCAGGAAATTAGTACAATCACTGTTTTTACAAAGGAACAATCA-GGGCCAGAGCTGTGAAGTCAGTA----TCCGAGGCTAGCAGC---TGAGTTAGGTCCCGGCATCCAGGTTGCTTCTTGGTACAACTC-CCACCAGGTCCTATTTTTAT--CCACCACCGAATGCTATCCCGTGCCTTCAATACCCTTGGGTT-TTTCCTAAGGAAAATGGAAACAGTCCCTTATAGCAAACAAAAGTTTGCTTTTTGACTGCAGAGCTGTGTGG i micMur3.chr7 I 24 I 280 s proCoq1.NW_012136747v1 4985138 359 - 6317780 tgaattgtgaaagaattttgtaaataaagGGTATGTGGGACGGACCTTATTTTTTTATGAGTTGTCACTTAGTATttaattcatgtgatatgcagtcctgagagatgtggaggaaatgagtacaatcgctgttttcacaaatgaagaatca-gggccagagccgtgaagtcaata----tccaaggctagcagc---tgagttagGTCCCAGCTTCCAGGTTGCTTGTTGGTACAACTC-CCACCAGGTCCTATTTTTAT--CCACCACCGAATGCTGTCCTGTGCCTTCAATACCCTTGGGTT-TTTTCTAAGGAAAATGGAAACAGTCCCTTATATCAAACAAAAGTTTGCTTTTTGACTGCAGAGCTG----- i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36238393 346 - 42659167 --AATTGTGAAAGGATTTTGTAAATAAAGGGTATGTGGGAAGGACTTTATCTTTTTATGAGTTGTCGCTTGGTATTTAATTCACGGGATATGCAGTCCCGAGAGAGGTGCAGGAAATTATTA-AATCACTGTTTTTATAACTGAAGAATTAGGGGCCAGAGCAGTGAAGTCAGTA----T-CGGGGCGAGCTGC---TGAATTGGGTCTTGGCATCCTGGTGGTTTG-GGGTG-----------CAGGTCCCATTATTTT--CCACTTCCGGATGCTATCACGTGCCCTCAGTACCTTTGAGTTCTTTTCTGAGGAAAATGGAAATAGTTTCTTGTATCAAACAAAAGTTTGCTTTTTGACTGCAAAGCTG----- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46035190 344 - 69331447 CGAGTGGTGAAAGGACTTGGTAAA---GGAGTA-GTGGGACAGACCTTGTC-TTTTAAGAGTTTTGACCTAGTACTTAATTCACGTGATGTGcagtcctgagaggtgggcagggaattactaca------gttttgacaaatgaagactc--aggccaaagcagcgaagccagtgaggctccaaagctagc-gcgagtta----ggtcccggaatccaggtttcctgctcgttcaaccctctaccagctcctgtttttttccccaccacgGAATGCTGTCACGTGCCCTGAGTACCCTTGGGT--TTTTCTAAG-----TGGAAACAGCCCCTCACACCAAACG--AGTTTGTTTTCTGACTCGAGGGCTG----- i canFam3.chr10 C 0 C 0 a score=221667.000000 s hg38.chr22_GL383582v2_alt 2994 26 + 162811 TGTGGGAGTT-AAAAAAA---------CAAATTCTC s panTro5.chr22 28756152 26 + 37823149 TGTGGGAATT-AAAAAAA---------CAAATTCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41058304 26 + 50109623 TGTGGGAATT-AAAAAAA---------CAAATTCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3033215 26 + 4464012 TGTGGGAGTT-AAAAAAA---------CAAATTCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563040 26 - 115148730 TGTGGGAGTT-AAAAAAA---------CAAATTCTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84185669 25 + 92844088 TGTGGGAGTT-AAAAAAA----------ACATTCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87530518 25 - 96509753 TGTGGGAGTT-AAAAAAA----------ACATTCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7019298 25 - 13098629 TGTGGGAGTT-AAAAAAA----------ACATTCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3991187 25 - 4483953 TGTGGGAGTT-AAAAAAA----------ACATTCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24617562 26 + 33263144 TGTGGGAGTTAAAAAAAA----------ACATTCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888113 25 - 14338769 TGTGGGAGTT-AAAAAAA----------ACATTCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 834426 24 + 1946073 TGTGGGAGTT--AAGAAA----------ACATTCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1873274 25 - 2117846 TATGGGAGTT-AAAACAC----------AAATTCTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8792525 25 - 16357246 TATGGGAGTT-AAAAAAC----------AAATTCTC i saiBol1.JH378157 C 0 I 1918 s cebCap1.NW_016107750v1 1267362 25 - 1807191 TATGGGAGTT-AAAAAAC----------AAATTGTC i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4985497 22 - 6317780 TGTGGGAATT-AAAAAAC-------------TTCTT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36238739 21 - 42659167 TGTGGGAGTT-AAAAAA--------------TTCTT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46035534 35 - 69331447 TGTGGGAGTA-ACAAAAAAAACAAAAACAAATTCTC i canFam3.chr10 C 0 C 0 e micMur3.chr7 5624652 280 + 108171978 I a score=455513.000000 s hg38.chr22_GL383582v2_alt 3020 45 + 162811 TTAAAGCTAGTCTAGCCTATGCTAACTCACACAATTGACTGTA-GG------------------------- s panTro5.chr22 28756178 45 + 37823149 TTAAAGCTAGTCTAGCCTATGCTAACTCACACAATTGACTGTA-GG------------------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41058330 45 + 50109623 TTAAAGCTAGTCTAGCCTATGCTAACTCACACAATTGACTGTA-GG------------------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3033241 45 + 4464012 TTAAAGCTAGTCTAGCTTATGCTAACTCACACAATTGACTGTA-GG------------------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563066 45 - 115148730 TTAAAGCTAGTCTGGCCTATGCTAACTCACACAATTGACTGTA-GG------------------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84185694 45 + 92844088 TTAAAGCTAGTCTGGCCTATGCTAACTCACATAGTTGACTGCA-GG------------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87530543 45 - 96509753 TTAAAGCTAGTCTGGCCTATGCTAACTCACACAGTTGACTGCA-GG------------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7019323 45 - 13098629 TTAAAGCTAGTCTGGCCTATGCTAACTCACACAGTTGACTGCA-GG------------------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3991212 44 - 4483953 TTAAAGCTAGTCTGGCCTATGCTAACTCACACAGTTGACTGCA--G------------------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24617588 45 + 33263144 TTAAAGCTAGTCTGGCCTATGCTAACTCACACAGTTGACTGCA-GG------------------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888138 45 - 14338769 TTAAAGCTAGTCTGGCCTATGCTAACTCACACAGTTGACTGCA-GG------------------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 834450 45 + 1946073 TTAAAGCTAGTCTGGCCTATGCTAACTCACACAGTTGACTGCA-GG------------------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1873299 46 - 2117846 TTAAAGCTAGTCTAGCCTATGCTAACTCACACAATTGACTGCAAGG------------------------- i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1267387 44 - 1807191 TTAAAGCTAGTCTATCCTATGCTAA--CACACAATTGACTGCAAGG------------------------- i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4985519 45 - 6317780 TTAAAGCTAGTCTGGCCTGTGCTAACTCACAGAATTGACTGCA-GG------------------------- i proCoq1.NW_012136747v1 C 0 I 219 s otoGar3.GL873526 36238760 45 - 42659167 TTAAAGCTCGTCTGGCCTATGCTAACTGACAGAACTGACTGCG-GG------------------------- i otoGar3.GL873526 C 0 I 36 s canFam3.chr10 46035569 70 - 69331447 TTAAAGCTAGTCTGGCCAATGCTAGCTCAGACTAATGAGTTCA-AGATTGTTTTTGTGGCAAGAAGCAGGG i canFam3.chr10 C 0 C 0 e micMur3.chr7 5624652 280 + 108171978 I e saiBol1.JH378157 8792550 1918 - 16357246 I a score=1346471.000000 s hg38.chr22_GL383582v2_alt 3065 171 + 162811 TCCATG-TTG-----GGAAAGACCTGCCTTATCAAAA----CAGTTGAAAAAAA---AATTTTT--TT------------AATTCTAGGAATACGAGA-GAAATGTTGCTGAGATTTTACTGACATTCTCCC-AATCCATCTAA------AGTCTTTGAGTGTAAATACATGCCCACTTTCAAATACATCTGTTTCTAAAATTT-------TT s panTro5.chr22 28756223 171 + 37823149 TCCATG-TTG-----GGAAAGACCTGCCTTATCAAAA----CAGTTGAAAAAAA---AATTTTT--TT------------AATTCTAGGAATACAAGA-GAAATGTTGCTGAGATTTTACTGACATTCTCCC-AATCCATCTAA------AGTCTTTGAGTGTAAATACATGCCCACTTTCAAATACATCTGTTTCTAAAATTT-------TT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41058375 171 + 50109623 TCCATG-TTG-----GGAAAGACCTGCCTTATCAAAA----CAGTTGAAAAAAA---AATTTTT--TT------------AATTCTAGGAATACAAGA-GAAATGTTGCTGAGATTTTACTGACATTCTCCC-AATCCATCTAA------AGTCTTTGAGTGTAAATACATGCCCACTTTCAAATACATCTGTTTCTAAAATTT-------TT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3033286 172 + 4464012 TCCATG-TTG-----GGAAAGACCTGCCTTATCAAAA----CAGTTG-AAAAAA---ATTTTTT--TT------------AATTCTAGGAATACGAGA-GAAATGTTGCTGAGATTTTACTGACATTCTCCC-AATCCATCTAAA----TAGTCTTTGAGTGTAAATACATGCCCACTTTCAAATACATCTGTTTCTAAAATTT-------TT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563111 172 - 115148730 TCCATG-TTG-----GGAAAGACCTGCCTTATCAAAA----CAGTTG-AAAAAA---AATTTTT--TT------------AATTCTAGGAATACGAGA-GAAATGTTGCTGAGATTTTACTGACATTCTCTC-AATCCATCTAAA----TAGTCTTTGAGTGTAAATACATGCCCACTTTCAAATACATCTGTTTCTAAAATTT-------TT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84185739 174 + 92844088 TCCATG-TTG-----GGAAAGACCTGCCTTATCAAAA----CAGTTGCAAAAAA---CTTTTTT--TT-----------AAATTCTAGGAATACGAGA-GAAACGTTGCTGAGATTTTACTGACATTCTCCC-AATCCATTTAAA----TAGTCTTTGAGTGTAAATACATGCCTACTTTCAAATACATCTGTTTCTAAAATTT-------TT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87530588 174 - 96509753 TCCATG-TTG-----GGAAAGACCTGCCTTATCAAAA----CAGTTGCAAAAAA---CTTTTTT--TT-----------AAATTCTAGGAATACGAGA-GAAACGTTGCTGAGATTTTACTGACATTCTCCC-AATCCATTTAAA----TAGTCTTTGAGTGTAAATACATGCCTACTTTCAAATACATCTGTTTCTAAAATTT-------TT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7019368 174 - 13098629 TCCATG-TTG-----GGAAAGACCTGCCTTATCAAAA----CAGTTGCAAAAAA---CTTTTTT--TT-----------AAATTCTAGGAATACGAGA-GAAACGTTGCTGAGATTTTACTGACATTCTCCC-AATCCATTTAAA----TAGTCTTTGAGTGTAAATACATGCCTACTTTCAAATACATCTGCTTCTAAAATTT-------TT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3991256 175 - 4483953 TCCATG-TTG-----GGAAAGACCTGCCTTATCAAAA----CAGTTGCAAAAAAACTTTTTTTT--TT-----------AAATTCTAGGAATACGAGA-GAAACGTTGCTGAGATTTTACTGACATCCTCCC-AATCCATCTAAA----TAGTC--TGAGTGTAAATACATGCCTACTTTCAAATACATCTGTTTCTAAAATTT-------TT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24617633 172 + 33263144 TCCATG-TTG-----GGAAAGACCTGCCTTATCAAAA----CAGTTGCAAAAAA---CTTTTTA---------------AAATTCTAGGAATACGAGA-GAAACGTTGCTGAGATTTTACTGACATTCTCCC-AATCCATCTAAA----TAGTCTTTGAGTGTAAATACATGCCTACTTTCAAATACATCTGTTTCTAAAATTT-------TT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888183 174 - 14338769 TCCATG-TTG-----GGAAAGACCTGCCTTATCAAAA----CAGTTGCAAAAAA---ACTTTTATTTT-----------AAATTCTAGGAATACGAGA-GAAACGTTGCTGAGATTTTACTGACATTCTCCC-AATCCATCTAAA----TAGTC--TGAGTGTAAATACATGCCTACTTTCAAATACATCTGTTTCTAAAATTT-------TT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 834495 174 + 1946073 TCCATG-TTG-----GGAAAGACCTGCCTTATCAAAA----CAGTTGGAAAAAA---CTTTTTT--TA-----------AAATTCTAGGAATACGAGA-GAAACGTTGCTGAGATTTTACTGACATTCTCCC-AATCCATCTAAA----TAGTCTTTGAGTGTAAATACATGCCCACTTTCAAATACGTCTGTTTCTAAAATTT-------TT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1873345 179 - 2117846 TCCACG-TTG-----GGAAAGAGCTGCCTTATCAGAAGGCCCAGT-------GA---CATTTTT--TT-----------AAACTCCAGGAATACAAGAGGAAATGTTCCTCAGATTTTACTGACACTCTCCC-AATCTATCTAAA----TAGTCTTTTAGTGTAAATACATGCCCCCTTTCACACACATTAGTTTCTAAAATTTAATTTGCTT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1267431 179 - 1807191 TCCACG-TTG-----GGAAAGAGCTGCCTTATCAGAAGGCACAGT-------GA---CATTTTT--TT-----------AAACTCCAGGAATACAAGAGGAAATGTTGCTCAGATTTTACTCACACTTTCCC-AATCTATCTAAA----TAGTCTTTTAGTGTAAATACATGCCCCCTTTCACACACATTAGTTTCTAAAATTTAATGTGCTT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36238841 183 - 42659167 TCCATGCTTG-----GGAAAGAGCTGCCTAATAAAAAGGTGCAGCT----AAAA---ATCTTTT--CT-----------GAACTCCAGGAAAATAGGAGGAAATAATGGTGAGATTTTACTGACATTTCCCC-AGTCCATGTAAA----TAGTCTTACAGTGTAAAGATGTGCCCACTTGCAAACACACCTATTTGTAAAATTTAATGTGGTG i otoGar3.GL873526 I 36 C 0 s canFam3.chr10 46035639 192 - 69331447 TCCGTG-GGGGGGGAGGGAAGAGCTGCCTTATAAAAAGGCACAGCTG----aaa---ttttttt--tttttttttttGCAACTCCTAGGAAAATAGAG-GATATGTTG---AGATTATGCTGAAACTCCCCTAAACCCATCTAAACAGCTAACCCTTTAGGGTAAGGACATGCTCACTTTACAAAACATGGTTATTTAAAACAT-------TT i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4985564 219 - 6317780 I e micMur3.chr7 5624652 280 + 108171978 I e saiBol1.JH378157 8792550 1918 - 16357246 I a score=577710.000000 s hg38.chr22_GL383582v2_alt 3236 57 + 162811 ---------AAATCAAATTTCTCAGGCATCAGGGAACCTGTTACTTAGTGAACTGTGTAGAATATC s panTro5.chr22 28756394 57 + 37823149 ---------AAATCAAATTTCTCAGGCATCAGGGGACCTGTTACTTAGTGAACTGTGTAGAATATC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41058546 57 + 50109623 ---------AAATCAAATTTCTCAGGCATCAGGGGACCTGTTACTTAGTGAACTGTGTAGAATATC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3033458 51 + 4464012 ---------AAATCAAATTTCTCAGGCATCAGGGAACCTGTTACTTAGTGAC---TGTGGAAC--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563283 57 - 115148730 ---------AAATCAAATTTCTCAGGCATCAGGGAACCTGTTACTTAGTGAACTGTATAGAATATC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84185913 57 + 92844088 ---------AAATCAAATTTCTCAGGCATCAGGGAACGTGTTACTTAATGAACTGTATAGAATATC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87530762 57 - 96509753 ---------AAATCAAATTTCTCAGGCATCAGGGAACGTGTTACTTAATGAACTGTATAGAATATC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7019542 57 - 13098629 ---------AAATCAAATTTCTCAGGCATCAGGGAACGTGTTACTTAATGAACTGTATAGAATATC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3991431 57 - 4483953 ---------AAATCAAATTTCTCAGGCATCAGGGAACGTGTTACTTAATGAACTGTATAGAATATC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24617805 57 + 33263144 ---------AAATCAAATTTCTCAGGCATCAGGGAACGTGTTACTTAATGAACTGTATAGAATATC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888357 57 - 14338769 ---------AAATCAAATTTCTCAGGCATCAGGGAGCTTGTTACTTAATGAACTGTATAGAATATC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 834669 57 + 1946073 ---------AAATCAAATTTCTCAGGCATCACGGAACTTGTTACTTAATGAACTGTATAGAATATC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1873524 55 - 2117846 ---------AAATCAAATTTCTCAGGCATCAGGGAAACTGTTACTTAATTAAC--TATAGAATATC i calJac3.chrUn_GL286373 C 0 I 302 s cebCap1.NW_016107750v1 1267610 57 - 1807191 ---------AAATCAAATTTCTCAGGCATCAGGGAACCTGTTACTTAATGAACTGTATAGAATATC i cebCap1.NW_016107750v1 C 0 I 298 s micMur3.chr7 5624932 53 + 108171978 ---------AAATCAAATTTCTTAGGCATCAGGAAACCTG----TTAATTAACTGTATAAAATATC i micMur3.chr7 I 280 C 0 s proCoq1.NW_012136747v1 4985783 49 - 6317780 ---------AAATCAAATTTCCTAGGCATCAGGGAACCT--------ATTAACTGTATAAAATATC i proCoq1.NW_012136747v1 I 219 C 0 s otoGar3.GL873526 36239024 57 - 42659167 ---------AAATCAAATTTCTCAGGTGTCAGGAAACCTGTTACTTAATTAACTGTATGGGATAGG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46035831 57 - 69331447 AATATGGTGACATTAAACGTTTCAGCCACTGGGGCATCTG----TTAAAGAACTGTGTGTA----- i canFam3.chr10 C 0 C 0 e saiBol1.JH378157 8792550 1918 - 16357246 I a score=245585.000000 s hg38.chr22_GL383582v2_alt 3293 22 + 162811 CCTTCACTGTACATCTTTCTGT s panTro5.chr22 28756451 22 + 37823149 CCTTCACTGTACATCTTTCTGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41058603 22 + 50109623 CCTTCACTGTACATCTTTCTGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3033509 16 + 4464012 ------CTGTACATCTTTCTGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563340 22 - 115148730 CCTTCACTGTACATCTTTCTGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84185970 22 + 92844088 CCTTCAGTGTACATCTTTCTGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87530819 22 - 96509753 CCTTCAGTGTACATCTTTCTGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7019599 22 - 13098629 CCTTCAGTGTACATCTTTCTGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3991488 22 - 4483953 CCTTCAGTGTACATCTTTCTGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24617862 22 + 33263144 CCTTCAGTGTACATCTTTCTGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888414 22 - 14338769 CCTTCAGTGTACATCTTTCTGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 834726 22 + 1946073 CCTTCAGTGTACATCTTTCTGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1873881 22 - 2117846 CCTTCACTGTACATCTTTCTGT i calJac3.chrUn_GL286373 I 302 C 0 s cebCap1.NW_016107750v1 1267965 22 - 1807191 CCTTCACTGTACATCTTTCTGT i cebCap1.NW_016107750v1 I 298 C 0 s micMur3.chr7 5624985 22 + 108171978 CCTTAACTGTACATCTTTCTGT i micMur3.chr7 C 0 I 176 s proCoq1.NW_012136747v1 4985832 22 - 6317780 CCTTAACTGTACATCTTTCTGT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36239081 22 - 42659167 CCTTCACTGTGCATCTCTCTGT i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46035888 0 - 69331447 C e saiBol1.JH378157 8792550 1918 - 16357246 I a score=200339.000000 s hg38.chr22_GL383582v2_alt 3315 24 + 162811 CATCGGTTTTCGTGTATTTC--GTGT s panTro5.chr22 28756473 24 + 37823149 CATCGGTTTTCGTGTATTTC--GTGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41058625 24 + 50109623 CATCGGTTTTCGTGTATTTC--GTGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3033525 24 + 4464012 CATCGGTTTTCGTGTATTTC--GTGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563362 24 - 115148730 CATCGGTTTTCGTGTATTTC--GTGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84185992 24 + 92844088 CATCGGTTTTCGTGTATTTC--GTGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87530841 24 - 96509753 CATCGGTTTTCGTGTATTTC--GTGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7019621 24 - 13098629 CATCGGTTTTCGTGTATTTC--GTGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3991510 24 - 4483953 CATCGGTTTTCGTGTATTTC--GTGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24617884 24 + 33263144 CATCGGTTTTCGTGTATTTC--GTGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888436 24 - 14338769 CATCGGTTTTCGTGTATTTC--GTGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 834748 24 + 1946073 CAGCGGTTTTCGTGTATTTC--GTGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1873903 26 - 2117846 CATAGGTTTTTGTGTATTTCATGTCT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1267987 26 - 1807191 CATAGGTTTTTGTGTATTTCATGTGT i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4985854 24 - 6317780 AATCCATTTTCTTGTATTTA--GTGT i proCoq1.NW_012136747v1 C 0 I 164 s otoGar3.GL873526 36239103 21 - 42659167 AATCCA---TCTTGTATTTA--GTGT i otoGar3.GL873526 C 0 I 1 s canFam3.chr10 46035888 13 - 69331447 -------TTTAGTGTCTTCT------ i canFam3.chr10 C 0 C 0 e micMur3.chr7 5625007 176 + 108171978 I e saiBol1.JH378157 8792550 1918 - 16357246 I a score=1084764.000000 s hg38.chr22_GL383582v2_alt 3339 124 + 162811 TCAGGCAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGATTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAAC-TTTAGATGTCTAGGGTGCCTTAGACTTTTCTT s panTro5.chr22 28756497 124 + 37823149 TCAGGTAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGATTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAAC-TTTAGATGTCTAGGGTGCCTTAGACTTTTCTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41058649 124 + 50109623 TCAGGTAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGATTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAAC-TTTAGATGTCTAGGGTGCCTTAGACTTTTCTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3033549 124 + 4464012 TCAGGTAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTCCTGGTGCACCCGATTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCGGTGTCCTAAC-TTTAGATGTCTAGGGTGCCTTAGACTTTTCTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563386 124 - 115148730 TCAGGTAGAGCTCA----------CTGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGATTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAAC-TTTAGATGTCTTGGGTGCCTTAGACTTTTCTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84186016 124 + 92844088 TCAGATAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGTCTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAAC-TTTAGATGTCTAGGGTGCCTGAGACTTTTCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87530865 124 - 96509753 TCAGATAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGTCTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAAC-TTTAGATGTCTAGGGTGCCTGAGACTTTTCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7019645 124 - 13098629 TCAGATAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGTCTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAAC-TTTAGATGTCTAGGGTGCCTTAGACTTTTCTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3991534 124 - 4483953 TCAGGTAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGTCTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAAC-TTTAGATGTCTAGGGTGCCTTAGACTTTTCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24617908 124 + 33263144 TCAGGTAGAGCTCA----------CCATAGTCTGGCCCTCCTAGTACTGGTGCACCCGTATGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAAC-TTTAGATGTCTAGGGTGCCTTTGACTTTTCTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888460 124 - 14338769 TCAGGTAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTACTGGTGCAGCCGTCTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAAC-TTTAGATGTCTAGGGTGCCTTAGACTTTTCTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 834772 124 + 1946073 TCAGGTAGAGCTCA----------CCGTAGTCTGGCCCTCCTAATACTGGTGCACCCGTCTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAAC-TTTAGATGTCTAGGGTGGCTTAGACTTTTCTT i colAng1.NW_012115588v1 C 0 I 315 s calJac3.chrUn_GL286373 1873929 124 - 2117846 TCAAGTAGAGCTCA----------CCATAGTCCAGCCCTCCTAGTACTGGCGCACCCGTCTGCCTGTAGAAATTTA-AAGTAATTAGCAGGCTGTGTCCTAAC-TTTAGATGTCTAGGGTACCTTAGACTTTTCTT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1268013 124 - 1807191 TCAAGTAGAGCTCA----------CCATAGTCCAGCCCTCCTAGTACTGGCGCACCCGTCCGCCTGTAGAGATTTA-AAGTAATTAGCAGGCTGTGTCCTAAC-TTTAGATGTCTAGGGTGCCTTAGACTTTTCTT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36239125 102 - 42659167 TTAAGTAGAGCTTC----------CCATAATCCATCCCTCTTA---CTTTCTCACCTGTTTGTCTG------------------TAGCAGGTTGTACCTTAACTTTTAGATGTCTGGAGTGCCTTGTACTGTT--- i otoGar3.GL873526 I 1 C 0 s canFam3.chr10 46035901 129 - 69331447 TTAAGTAGAGGTGAGCTCTTGTTGCCACAGTCCCA-ACTCTTAGTACT---TTACCTGTTTATCCGT---TATCTGCAAGTAATCACCCGGTTGTGCCATAATTTTTAGATGTCTAGAATGCCTTATCCTTTTCCT i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4985878 164 - 6317780 I e micMur3.chr7 5625007 176 + 108171978 I e saiBol1.JH378157 8792550 1918 - 16357246 I a score=410466.000000 s hg38.chr22_GL383582v2_alt 3463 46 + 162811 TCCAGTGGACTTTTCGTCCATTTTGATGGCCATAACAGTCACCTTA s panTro5.chr22 28756621 46 + 37823149 TCCAGTGGACTTTTCGTCCATTTTGATGGCCGTAACAGTCATCTTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41058773 46 + 50109623 TCCAGTGGACTTTTCGTCCATTTTGATGGCCGTAACAGTCATCTTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3033673 46 + 4464012 TCCAGTGGACTTTTCGTCCATTTTGATGGCCATAACAGTCACCTTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563510 46 - 115148730 TCCAGTGGACTTTTCGTCCACTTTGATGGCCATAACAGTCACttta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84186140 46 + 92844088 TCCAGTGTACTTTTCATCCACTTTGATGGCCATAACAGTCACCTTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87530989 46 - 96509753 TCCAGTGGACTTTTCATCCACTTTGATGGCCATAACAGTCACCTTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7019769 46 - 13098629 TCCAGTGGACTTTTCATCCACTTTGATGGCCATAACAGTCACCTTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3991658 46 - 4483953 TCCAGTGGACTTTTCATCCACTTTGATGGCCATAACAGTCACCTTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24618032 46 + 33263144 TCCAGTGGACTTTTCATCCACTTTGATGGCCATAACAGTCACCTTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888584 46 - 14338769 TCCAGTGGACTTTTCATCCACTTTGATGGCCATAACAGTCACCTTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 835211 46 + 1946073 TCCAGTGGACTTTTCATCCACTTTGATGGCCATAACAGTCACCTTA i colAng1.NW_012115588v1 I 315 C 0 s calJac3.chrUn_GL286373 1874053 46 - 2117846 TCCAATGGACTTTTCATCCACTTTGATGGCCATGACAGTCACCTTA i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1268137 46 - 1807191 TCCAGTGGACTTTTCATCCACTTTGATGGCCATGACAGTCACCTTA i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36239227 35 - 42659167 --CAG---------CATCCACTTTCATAGCCATAACAATTACCATA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46036030 36 - 69331447 ---------TCTCCTAGCCACTTTGATGGCAATAA-AATAACCTTA i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4985878 164 - 6317780 I e micMur3.chr7 5625007 176 + 108171978 I e saiBol1.JH378157 8792550 1918 - 16357246 I a score=45505.000000 s hg38.chr22_GL383582v2_alt 3509 12 + 162811 TCTCC-------tttt-----ttt s panTro5.chr22 28756667 18 + 37823149 TCTCCtttt-tttttt-----ttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41058819 19 + 50109623 TCTCCttttctttttt-----ttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3033719 17 + 4464012 TCTCCttttc--tttt-----ttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563556 14 - 115148730 tctcctt-----ttct-----ttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84186186 14 + 92844088 TCCCttt-----ttct-----ttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87531035 14 - 96509753 TCCCttt-----ttct-----ttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7019815 14 - 13098629 TCCCttt-----ttct-----ttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3991704 14 - 4483953 TCCCttt-----ttct-----ttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24618078 14 + 33263144 TCCCttt-----ttct-----ttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888630 14 - 14338769 TCCCttt-----ttct-----ttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 835257 19 + 1946073 TCCCttt-----ttgttattgttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874099 12 - 2117846 TCTCCtt-----ttgt-----t-- i calJac3.chrUn_GL286373 C 0 I 6 s cebCap1.NW_016107750v1 1268183 12 - 1807191 TCTCCtt-----ttgt-----t-- i cebCap1.NW_016107750v1 C 0 I 6 s canFam3.chr10 46036066 12 - 69331447 TCTCTTC-----TTTT-----T-- i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36239262 0 - 42659167 C e proCoq1.NW_012136747v1 4985878 164 - 6317780 I e micMur3.chr7 5625007 176 + 108171978 I e saiBol1.JH378157 8792550 1918 - 16357246 I a score=14178.000000 s hg38.chr22_GL383582v2_alt 3521 3 + 162811 ttt s panTro5.chr22 28756685 3 + 37823149 ttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41058838 3 + 50109623 ttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3033736 3 + 4464012 ttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563570 3 - 115148730 ttc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84186200 3 + 92844088 ttg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87531049 3 - 96509753 ttg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7019829 3 - 13098629 ttg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3991718 3 - 4483953 ttg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24618092 3 + 33263144 ttg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888644 3 - 14338769 ttg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 835276 3 + 1946073 ttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874117 3 - 2117846 ttt i calJac3.chrUn_GL286373 I 6 C 0 s canFam3.chr10 46036078 3 - 69331447 TTG i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36239262 0 - 42659167 C e proCoq1.NW_012136747v1 4985878 164 - 6317780 I e micMur3.chr7 5625007 176 + 108171978 I e cebCap1.NW_016107750v1 1268195 6 - 1807191 I e saiBol1.JH378157 8792550 1918 - 16357246 I a score=280825.000000 s hg38.chr22_GL383582v2_alt 3524 41 + 162811 ttttgagacggagtctcactctgtcacccaggctggagtac s panTro5.chr22 28756688 41 + 37823149 ttttgagacggagtctcactctgtcacccaggctggagtac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41058841 41 + 50109623 ttttgagacggagtctcactctgtcacccaggctggagtac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3033739 41 + 4464012 ttttgagacggagtctcattctgtcacccaggctggagtac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563573 41 - 115148730 atttgagacggagtctcactctgtcacccaggctggagtac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84186203 41 + 92844088 ttttgagatggagtctcactctgtcacccaggctggagtac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87531052 41 - 96509753 ttttgagatggagtctcactctgtcacccaggctggagtac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7019832 41 - 13098629 ttttgagatggagtctcactctgtcacccaggctggagtac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3991721 41 - 4483953 ttttgagatggagtctcactctgtcacccaggctggagtac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24618095 41 + 33263144 ttttgagatggagtctcactgtgtcacccaggctggagtac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888647 41 - 14338769 ttttgagatggagtctcactctgtcacccaggctggagtac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 835279 41 + 1946073 ttttgagatggagtctcactttgtcacccaggctggagtac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874120 41 - 2117846 tctttagacagagtctcactctgttgcctaggctggagtgc i calJac3.chrUn_GL286373 C 0 C 0 e canFam3.chr10 46036081 0 - 69331447 C e otoGar3.GL873526 36239262 0 - 42659167 C e proCoq1.NW_012136747v1 4985878 164 - 6317780 I e micMur3.chr7 5625007 176 + 108171978 I e cebCap1.NW_016107750v1 1268195 6 - 1807191 I e saiBol1.JH378157 8792550 1918 - 16357246 I a score=1418152.000000 s hg38.chr22_GL383582v2_alt 3565 251 + 162811 agtggcacaatcttggctcactgcagcctccgcctcccgggttcaagtgattcttctgcctcagccttctgagtagctgggactacaggcatgtaccaccacacccggctaattttttgtatttttagtagagac-ggggtttcactatgttagccaggctgatttcgaacttctgacctcgtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgc-----gcccggccttttgtc s panTro5.chr22 28756729 251 + 37823149 agtggcacaatcttggctcactgcagcctccgcctcccgggttcaagtgattcttctgcctaagccttctgagtagctgggactacaggcatgtaccaccacatccggctaattttttgtatttttagtagagac-agggtttcactatgttggccaggctgatttcgaacttctgagctcgtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgc-----gcccggccttttgtc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41058882 251 + 50109623 agtggcacaatcttggctcactgcagcctccgcctcccgggttcaagtgattcttctgcctaagccttctgagtagctgggactacaggcatgtaccaccacatccggctaattttttgtatttttagtagagac-agggtttcactatgttggccaggctgatttcgaacttctgagctcgtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgc-----gcccggccttttgtc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3033780 250 + 4464012 agtggcacaatcttggct-actgcagcctccgcctcccgggttcaagtgattcttctgcctcagccttctgagtagctgggactacaggcatgtaccaccacacccggctaattttttgtatttttagtagagat-ggggtttcactatgttggccaggctggtttcgaacttctgacctcctgatctgcctgcctcagcctcccaaagtgctgggattacaggtgtgagccactgc-----gcccggccttttgtc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563614 251 - 115148730 agtggcacaatcttggctcactgcaacctccgcctcccgggttcaagtgattcttctgcctcagccttctaagtagctgggactacaggcgtgtaccaccacacccggctaagtttttgtatttttagtagagac-ggggtttcactatgttggccaggctggtttcgaacttctgacctcgtgatccacctgcctcggcctcccaaggtgctgggattacaggtgtgagccactgc-----gcccggccttttttc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84186244 251 + 92844088 aatggcacagtctcggctcactgcaacctccgcctcctgggttcaagtgattcttctgcctcagtcttctgagtagctgggactacaggcgtgtaccaccacacccggctaattttttgtatttttagtagagat-ggggtttcaccatgttggccaggctggtttcaaactcctgacctcgtgatctgcttgcctcggcctcccaaagtgctggggttacagatatgagccactgc-----gcctggccttttttc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87531093 251 - 96509753 aatggcacagtctcggctcactgcaacctccgcctcctgggttcaagtgattcttctgcctcagtcttctgagtagctgggactacaggcgtgtaccaccacacccggctaattttttgtatttttagtagagat-ggggtttcaccatgttggccaggctggtttcgaactcctgacctcgtgatctgcttgcctcggcctcccaaagtgctggggttacagatatgagccactgc-----gcctggccttttttc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7019873 251 - 13098629 agtggcacagtctcggctcactgcaacctccgcctcctgggttcaagtgattcttctgcctcagtcttctgagtagctgggactacaggcgtgtaccaccacacccggctaattttttgtatttttagtagagat-ggggtttcaccatgttggccaggctggtttcgaactcctgacctcgtgatctgcttgcctcggcctcccaaagtgctggggttacagatatgagccactgc-----gcctggtcttttttc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3991762 250 - 4483953 agtggcacagtctcggctcactgcaacctccgcctcccgggttcaagtgattcttctgcctcagtcttctgagtagctgggactacaggcgtgtaccaccacacccggc-aattttttgtatttttagtagagat-ggggtttcaccatgttggccaggctggtttcgaactcctgacctcgtgatctgcttgcctcggcctcccaaagtgctaggattacagatatgagccactgc-----gcctggccttttttc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24618136 256 + 33263144 agtggcacagtctccgctcactgcaacctccgcctcccgggttcaagtgattcttctgcctcagtcttctgagtagctgggactacaggcgtgtaccaccacacccggctaattttttgtatttttagtagagat-ggggtttcaccatgttggccaggctggtttcgaactcctgacctcgtgatctgcttgcctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggccTGGCCttttttc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888688 250 - 14338769 agtggcacagtctcggctcactgcaacctccgcctcccgggttcaagtgattcttctgccccagtcttctgagtagctgggactacaggcgtgtaccaccacacccggc-aattttttgtatttttagtagagat-ggggtttcaccatgttggccaggctggtttcgaactcctgacctcgtgatctgcttgcctcggcctcccaaagtgctaggattacagatatgagccactgc-----gcctggccttttttc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 835320 245 + 1946073 agtggcacagtctcggctca-------ctccgcctcccgggttcaagtgattcttctgcctcagtcttctgagtagctgggactacaggcatgtaccaccacacccagctgattttttgtatttttagtagagatgggggtttcatcatgttggccaggctggtttcgaactcctgacctcgtgatctgcttgccttggcctcccaaagtgctgggattacaaatatgagccactgc-----gcctggccttttttc i colAng1.NW_012115588v1 C 0 C 0 e canFam3.chr10 46036081 0 - 69331447 C e otoGar3.GL873526 36239262 0 - 42659167 C e proCoq1.NW_012136747v1 4985878 164 - 6317780 I e micMur3.chr7 5625007 176 + 108171978 I e cebCap1.NW_016107750v1 1268195 6 - 1807191 I e saiBol1.JH378157 8792550 1918 - 16357246 I e calJac3.chrUn_GL286373 1874161 0 - 2117846 C a score=271562.000000 s hg38.chr22_GL383582v2_alt 3816 44 + 162811 ttttttttagacagagcctcactctgtctcccaggctggagtgg s panTro5.chr22 28756980 44 + 37823149 ttttttttagacagagcctcactctgtctcccaggctggagtgg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059133 44 + 50109623 ttttttttagacagagcctcactctgtctcccaggctggagtgg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034030 44 + 4464012 ttttttttagacagagcctcactctgtctcccaggctggagtgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563865 44 - 115148730 ttttttttagacagagcctcactctgtcgcccaggctggagtgg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84186495 44 + 92844088 tttttttaagacagagcctcactctgttgccgaggctggagtgc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87531344 44 - 96509753 tttttttaagacagagcctcactctgttgccgaggctggagtgc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7020124 39 - 13098629 -----ttaagacagagcctcactctgttgctgaggctggagtgc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3992012 44 - 4483953 tttttttaagacagagcctcactctgttgccgaggctggagtgc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24618392 44 + 33263144 tttttttaagacagagcctcactctgttgccaaggctggagtgc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888938 44 - 14338769 tttttttaagacagagcctcactctgttgccgaggctggagtgc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 835565 44 + 1946073 ttttttttagacagagcctcactctgttgccgaggctggagtgc i colAng1.NW_012115588v1 C 0 C 0 s cebCap1.NW_016107750v1 1268201 44 - 1807191 ttttctttagacagagtcttactctgttgtctaggctggagtgc i cebCap1.NW_016107750v1 I 6 C 0 e canFam3.chr10 46036081 0 - 69331447 C e otoGar3.GL873526 36239262 0 - 42659167 C e proCoq1.NW_012136747v1 4985878 164 - 6317780 I e micMur3.chr7 5625007 176 + 108171978 I e saiBol1.JH378157 8792550 1918 - 16357246 I e calJac3.chrUn_GL286373 1874161 0 - 2117846 C a score=763298.000000 s hg38.chr22_GL383582v2_alt 3860 102 + 162811 aatggtgcaatcttggctcactgcaacttctgcctcctggattcaagcaattatcctgcctcagcctcccgagtagctgggattacaggtgcgcaccaccat s panTro5.chr22 28757024 102 + 37823149 aatggtgcaatcttggctcactgcaacttctgcctcctggattcaagcaattatcctgcctcagcctaccgagtagctgggattacaggtgcgcaccaccat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059177 102 + 50109623 aatggtgcaatcttggctcactgcaacttctgcctcctggattcaagcaattatcctgcctcagcctaccgagtagctgggattacaggtgcgcaccaccat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034074 101 + 4464012 aatggtgc-atcttggctcactgcaacttctgcctcctggattcaaccaattatcctgcctcagcctcccgagtagctgggattacaggcgtgcaccaccat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106563909 102 - 115148730 aatggtgcaatcttggttcactgcaacttctgcctcctgggttcaagaaattatcctgcctcagcctcccgagtagctgggattacaggcgcgcgccaccat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84186539 102 + 92844088 aatggtgcaatcttggttcactgcaacccctgtctcctgggttcaatcaattctcctgcctcagtctcccaagtagctgggattacaggcgtgcgccaccat i rheMac8.chr10 C 0 I 323 s macFas5.chr10 87531388 102 - 96509753 aatggtgcaatcttggttcactgcaacccctgtctcctgggttcaatcaattctcctgcctcagcctcccaagtagctgggattacaggcgtgcgccaccat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7020163 102 - 13098629 aatggtgcaatcttggctcactgcaacccctgtctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccacctc i macNem1.NW_012012688v1 C 0 I 143 s cerAty1.NW_011999588v1 3992056 102 - 4483953 aatggtgcagtcttggctcactgcaacccctgtctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcgtgcgccaccat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24618436 102 + 33263144 aatggtgcaatcttggctcactgcaacccctgtctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcgtgcgccaccat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13888982 102 - 14338769 aatggtgcaatcttggctcactgcaacccctgtctactgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcgtgtgccaccat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 835609 102 + 1946073 aatggtgcaatcttggctcactgcaacccctgtctcctgggttcaagcaattcttctgcctcagcctcccaagtagctgggattacaggcgtgcatcaccat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874161 102 - 2117846 aatggtacaatcttgcctcactgcaacccctgcctcccaggttcaagcaattctcctgcctcagcctcccaagtagctaggattacaggcatgcgccaccac i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1268245 102 - 1807191 aatggtacaatcttgcctcactgcaacctctgcctcccaggttcaagcaattctcctgcctaagcctcccaagtagctgggattacaagcatgcaccaccac i cebCap1.NW_016107750v1 C 0 C 0 e canFam3.chr10 46036081 0 - 69331447 C e otoGar3.GL873526 36239262 0 - 42659167 C e proCoq1.NW_012136747v1 4985878 164 - 6317780 I e micMur3.chr7 5625007 176 + 108171978 I e saiBol1.JH378157 8792550 1918 - 16357246 I a score=18200.000000 s hg38.chr22_GL383582v2_alt 3962 2 + 162811 gc s panTro5.chr22 28757126 2 + 37823149 gc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059279 2 + 50109623 gc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034175 2 + 4464012 gc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564011 2 - 115148730 gc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84186964 2 + 92844088 gc i rheMac8.chr10 I 323 C 0 s macFas5.chr10 87531490 2 - 96509753 gc i macFas5.chr10 C 0 I 320 s macNem1.NW_012012688v1 7020408 2 - 13098629 GC i macNem1.NW_012012688v1 I 143 C 0 s cerAty1.NW_011999588v1 3992158 2 - 4483953 gc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24618538 2 + 33263144 gc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889084 2 - 14338769 gc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 835711 2 + 1946073 gc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874263 2 - 2117846 gc i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1268347 2 - 1807191 gc i cebCap1.NW_016107750v1 C 0 C 0 e canFam3.chr10 46036081 0 - 69331447 C e otoGar3.GL873526 36239262 0 - 42659167 C e proCoq1.NW_012136747v1 4985878 164 - 6317780 I e micMur3.chr7 5625007 176 + 108171978 I e saiBol1.JH378157 8792550 1918 - 16357246 I a score=181141.000000 s hg38.chr22_GL383582v2_alt 3964 25 + 162811 tgggtcaa-ttttttgtatttttagt s panTro5.chr22 28757128 25 + 37823149 tgggccaa-ttttttgtatttttggt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059281 25 + 50109623 tgggccaa-ttttctgtatttttggt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034177 25 + 4464012 tgggccaa-ttttttgtatttttagt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564013 25 - 115148730 tgggccaa-ttttttgtatttttagt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84186966 25 + 92844088 tgggccaa-ttttttgtatttttagt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87531812 25 - 96509753 tgggccaa-ttttttgtatttttagt i macFas5.chr10 I 320 C 0 s macNem1.NW_012012688v1 7020410 25 - 13098629 TGggccaa-ttttttgtatttttagt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3992160 25 - 4483953 tgggccaa-ttttttgtatttttagt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24618540 25 + 33263144 tgggccaa-ttttttgtatttttagt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889086 25 - 14338769 cgggccaa-ttttttgtacttttagt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 835713 25 + 1946073 tgggccaa-ctttttgtatttttagt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874265 26 - 2117846 cgagctaatttttttgtatttttagt i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1268349 26 - 1807191 cgagctaatttttttatatttttagt i cebCap1.NW_016107750v1 C 0 C 0 e canFam3.chr10 46036081 0 - 69331447 C e otoGar3.GL873526 36239262 0 - 42659167 C e proCoq1.NW_012136747v1 4985878 164 - 6317780 I e micMur3.chr7 5625007 176 + 108171978 I e saiBol1.JH378157 8792550 1918 - 16357246 I a score=1017696.000000 s hg38.chr22_GL383582v2_alt 3989 118 + 162811 agagacgggatttcaccatgttggccaggctggtctcaagctcctgacctcaggtggtccacccacctcagcctcccaaagtgctgggattaaaggtgtgagccaccctgcctggccT s panTro5.chr22 28757153 118 + 37823149 agagacgggatttcaccatgttggccaggctggtctcaagctcctgacctcaggtggtccaccaacctcagcctcccaaagtgctgggattaaaggtgtgagccaccctgcctggccT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059306 118 + 50109623 agagacgggatttcaccatgttggccaggctggtctcaagctcctgacctcaggtggtccacccacctcagcctcccaaagtgctgggattaaaggtgtgagccaccctgcctggccT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034202 118 + 4464012 agagacgggatttcaccatgttggccaggctggtctcaagctcctgacctcaggtggtccacccatctcagcctcccaaagtgctgggattaaaggtgtgagccaccctgcctggccT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564038 116 - 115148730 agagacgg--tttcaccatgttggccaggctggcctcaagctcctgacctcaggtggtccacccgctttggcctcccaaagtgccgggattaaaggtgtgagtgacgccgcctggccT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84186991 118 + 92844088 agagacggggtttcaccatgttggctaggctggtctcaagctcctgacctcaggtgatccacccaccttggcttcccaaagtgctgggattacaggtgtgagccaccctgcctggccC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87531837 118 - 96509753 agagacggggtttcaccatgttggctaggctggtctcaagctcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccctgcctggccC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7020435 118 - 13098629 agagacggggtttcaccatgttggctaggctggtctcaagctcctgacctcaggtgatccacccaccttggcttcccaaagtgctgggattacaggtgtgagccaccccgcctggccC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3992185 118 - 4483953 agagacggggtttcaccatgttggctaggctggtctcaagctcctgacctcaggtggtccacccaccttggcttcccaaagtgctgggattacaggtgtgagccaccccgcctggccC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24618565 118 + 33263144 agagacggggtttcgctatgttggctaggctggtctcaagctcctgacctcaggtggtccacccaccttggcttcccaaagtgctgggattacaggtgtgagccaccccgcctggccC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889111 118 - 14338769 agagacggggtttcaccatgttggctaggctggtctcaagctcctgacctcaggtggtccacccaccttggcttcccaaagtgctgggattacaggtgtgagccaccccgcctggccC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 835738 118 + 1946073 agagacggggtttcaccatgttggctaggctggtctcaagctcctgacctcaggtggtccacccaccttggcttcccaaagtgctgggattacaggtgtgagccaccccgcctgaccC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874291 118 - 2117846 agagatggggtttctccatgttgtctaggctgttctcgagctcctgaccttaggtgatccacccacctcggcctcccaaagtgctaggattacaggcccgagacaccccgcctggccC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8794468 116 - 16357246 agagacggggtttcaccatgttgaccaggatggtctcgatctcttgacctc--gtgatccacccacctcggcctcccaaagtgctgggattacaggcctgagacaccacgcctggccC i saiBol1.JH378157 I 1918 C 0 s cebCap1.NW_016107750v1 1268375 118 - 1807191 agagatggggtttctccatattatccaggctgttctcgagctcctgaccttaggtgatccacccacctcggcctcccaaagtgctaggattacaggcctgatacaccccgcctggccC i cebCap1.NW_016107750v1 C 0 C 0 e canFam3.chr10 46036081 0 - 69331447 C e otoGar3.GL873526 36239262 0 - 42659167 C e proCoq1.NW_012136747v1 4985878 164 - 6317780 I e micMur3.chr7 5625007 176 + 108171978 I a score=51952.000000 s hg38.chr22_GL383582v2_alt 4107 4 + 162811 TCTC s panTro5.chr22 28757271 4 + 37823149 TCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059424 4 + 50109623 TCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034320 4 + 4464012 TCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564154 4 - 115148730 TCTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187109 4 + 92844088 TCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87531955 4 - 96509753 TCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7020553 4 - 13098629 TCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3992303 4 - 4483953 TCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24618683 4 + 33263144 TCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889229 4 - 14338769 TCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 835856 4 + 1946073 TCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874409 4 - 2117846 TCTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8794584 4 - 16357246 TCTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1268493 4 - 1807191 TCTC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5625183 4 + 108171978 TCTC i micMur3.chr7 I 176 C 0 s otoGar3.GL873526 36239262 4 - 42659167 TCTC i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46036081 0 - 69331447 C e proCoq1.NW_012136747v1 4985878 164 - 6317780 I a score=209453.000000 s hg38.chr22_GL383582v2_alt 4111 18 + 162811 CTTTTCTAATTACTTTTC s panTro5.chr22 28757275 18 + 37823149 CTTTTCTAATTACTTTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059428 18 + 50109623 CTTTTCTAATTACTTTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034324 18 + 4464012 CTTTTCTAATTACTTTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564158 18 - 115148730 CTTTTCTAATTACTTTTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187113 18 + 92844088 CTTTTCTAATTACTTTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87531959 18 - 96509753 CTTTTCTAATTACTTTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7020557 18 - 13098629 CTTTTCTAATTACTTTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3992307 18 - 4483953 CTTTTCTAATTACTTTTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24618687 18 + 33263144 CTTTTCTAATTACTTTTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889233 18 - 14338769 CTTTTCTAATTACTTTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 835860 18 + 1946073 CTTTTCTGATTACTTTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874413 9 - 2117846 CTTTTCTAA--------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8794588 18 - 16357246 CTTTTCTAATTCCTTTTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1268497 18 - 1807191 CTTTTCTAGTTCCTTTTC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5625187 18 + 108171978 CTTTTCTAATTATTTTCC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 4986042 18 - 6317780 CTTTTCTAATTATTGTTC i proCoq1.NW_012136747v1 I 164 C 0 s otoGar3.GL873526 36239266 18 - 42659167 CTTTTCTAATTATTTTTC i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46036081 0 - 69331447 C a score=4700438.000000 s hg38.chr22_GL383582v2_alt 4129 331 + 162811 TTGCCCTGAATTTTTCCAAGGACTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAG-----------GGTATGTCTGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTCGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAgaggatgatgatgatgatgaCTAACAGGTAAGACTTGCTTTAC-CCTAGATGGAG---------------CAGGAAGCAGGGTGGAGCATCTG s panTro5.chr22 28757293 331 + 37823149 TTGCCCTGAATTTTTCCAAGGACTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAG-----------GGTATGTCTGTGAGATGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTCGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAgaggatgatgatgatgatgaCTAACAGGTAAGACTTGCTTTAC-CCTAGATGGAC---------------CAGGAAGCAGGGTGGAGCATCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059446 331 + 50109623 TTGCCCTGAATTTTTCCAAGGACTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAG-----------GGTATGTCTGTGAGATGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTCGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAgaggatgatgatgatgatgaCTAACAGGTAAGACTTGCTTTAC-CCTAGATGGAC---------------CAGGAAGCAGGGTGGAGCATCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034342 331 + 4464012 TTGCCCTGAATTTTTCCAAGGACTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAG-----------GGTATGTCTGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTCGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAgaggatgatgatgatgatgaCTAACAGGTAAGACTTGCTTTAC-CCTAGATGGAC---------------CAGGAAGCAGGGTGGAGCATCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564176 327 - 115148730 TTGCCCTGAATTTTTCCAAGGACTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAG-----------GGTATGTCCGTGAGAGGGCCCGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCTTCTGCAGATGTCCTTCGGCCTTCTCCGTGTGTTCTGCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAgaggatgatgatgatgatgaCTAACAGGTAAGACTTGCTTTAC-CCTAGATGGAC---------------CAGGAAGCAGGGTGGAGCA---- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187131 342 + 92844088 TTGCCCTGAATTTTTCCAAGGATTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAGGTCCACAGGAGGGTATGTCCGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTTGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGACGATGATGATGACTAACAGGTAAGACTTGCTTTAC-CCTAGATGGAC---------------CAGGAAGCAGGGTGGAGCATCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87531977 342 - 96509753 TTGCCCTGAATTTTTCCAAGGATTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAGGTCCACAGGAGGGTATGTCCGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTTGGCCTTCTTCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGACGATGATGATGACTAACAGGTAAGACTTGCTTTAC-CCTAGATGGAC---------------CAGGAAGCAGGGTGGAGCATCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7020575 342 - 13098629 TTGCCCTGAATTTTTCCAAGGATTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAGGTCCACAGGAGGGTATGTCCGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTTGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGACGATGATGATGACTAACAGGTAAGACTTGCTTTAC-CCTAGATGGAC---------------CAGGAAGCAGGGTGGAGCATCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3992325 342 - 4483953 TTGCCCTGAATTTTTCCAAGGATTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAGGTCCACAGGAGGGTATGTCCGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTTGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGACGATGATGATGACTAACAGGTAAGACTTGCTTTAC-CCTAGATGGAC---------------GAGGAAGCAGGGTGGAGCATCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24618705 342 + 33263144 TTGCCCTGAATTTTTCCAAGGATTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAGGTCCACAGGAGGGTATGTCCGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTTGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGACGATGATGATGACTAACAGGTAAGACTTGCTTTAC-CCTAGATGGAC---------------GAGGAAGCAGGGTGGAGCATCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889251 342 - 14338769 TTGCCCTGAATTTTTTCAAGGATTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAGGTCCACAGGAGGGTATGTCCGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTTGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGACGATGATGATGACTAACAGGTAAGACTTGCTTTAC-CCTAGATGGAC---------------GAGGAAGCAGGGTGGAGCATCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 835878 342 + 1946073 TTGCCCTGAATTTTTCCAAGGATTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAGGTCCACAGGAAGGTATGTCCATGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTCGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTTGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGACGATGATGATGACTAACAGGTAAGACTTGCTTTAC-CCTAGATGGAC---------------GAGGAAGCAGGGTGGAGCATCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874422 324 - 2117846 ----------------CAAAGATTTT--AAAGTCA---AGTTGCTTATGATGGGTCTGAGTTCCACAGGAGGGAGTGTCCATGAGAGGGCCGGGTCTTCTTTGGTCTTGCCAGAGGCGACTC--GAGCTCACAGCCACCACTTTGACCCTCTGCAGATGTCCTTCGGCCTTCTCCGTGTGTTTTCCATCGTGATCCCCTTTCTCTATGTCGGGACGCTCATTAGCAAGAACTTTGCTGCTCTGCTTGAGGAACATGACATTTTTGTTCCAGAGGATGATGATGATGACGACTAACAAGTAAGACTTGCTTTAC-CCTAGATGGAC---------------CAGGAAGCAGGGTGGAGCATCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8794606 342 - 16357246 TTGCCCTGAATTCTTCCAAAGATTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAGTTCCACAGTAGGGAATGTCCATGACAGGGCCAGTTTTTCTTTGGTCTTGCCAGAGGCGGCTCTGGAGCTCACAGCCACCACTCTGACCCTCTGCAGATGTCTTTCGGTCTTCTCCGTGTGTTTTCCATCGTGATCCCCTTTCTCTATGTCGGGACGCTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGATGATGACGACGACTAACAAGTAAGACTTGCTTTAA-CTTAGATGGAC---------------CAGGAAGCAGGGTGGAGCACGTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1268515 342 - 1807191 TTGCCCTGAATTTTTCCAAAGATTTT--AAAATCA---AGTTGCTTATGATGGGTCTGAGTTCCACAGGAGGGAATGTCCATGAGAGGGCCAGGTCTTCTTTGGTCTTGCCAGAGGCAGCTCTGGAGCTCACAGCCGCCACTCTGACCCTCTGCAGATGTCCTTCGGCCTTCTCCGTGTGTTTTCCATCGTGATCCCCTTTCTCTATGTTGGGACGCTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGATGATGATGACGACTAACAAGTAAGACTTGCTTTAC-CTTAGATGGAC---------------CAGGAAGCAGGGTGGAGCATCTG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5625205 349 + 108171978 TTGCTCTGAATTTTTCCAAGGGCTTT--AAAATCA---AGTTGCTTATGATGGGTCTGGGGTCCATAGGAGGGAATGCCCATGAGAGGGTCTGGCCTTCTATGGTCCTGCCAAAGTGGACTCTGGAACTCACGGCCACCATTCTGACCTTCTGCAGATGTCCTTCGGCCTTCTCCGCGTGTTCTCCATTGTGATCCCCTTTCTCTATGTTGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTCCCAGAGGATGACGACGATGATGACTAAAAGGTAAGATTTGCTTTACGCCTAGATGAAC---------CAGGAGCAGGAAGCAGAGTGGAGCATCTG i micMur3.chr7 C 0 I 1 s proCoq1.NW_012136747v1 4986060 349 - 6317780 TTGCTCTGAATTTTTCCAAGGGCTTT--AAAATCA---AGTTGTTTATGATGGGTCTGGGGTCCATAGGAGGGAATGCACATGAGAGGGCCTGGCCTTCTATGGTCCTGCCAAAGTGGACTCTGGAGCTCACGGCCACCACTCTGACCTTCTGCAGATGTCCTTCGGCCTTCTCCGCGTATTCTCCATTGTGATCCCCTTTCTCTATGTTGGGACGCTCATCAGCAAGAACTTTGCCGCTCTACTTGAGGAACATGACATTTTTGTCCCAGAGGACGATGATGATGATGACTAACAGGTAAGATTTGCTCTACCCCTAGATGAAC---------CAGGAGCAGGAAGCAGGGTGAAGCATCTG i proCoq1.NW_012136747v1 C 0 I 28 s otoGar3.GL873526 36239284 358 - 42659167 TTGCTCTGAATTATTTCAATGACTTTGAAAAATTC---AGTTGCTTACATTTGGTCTGGGCTCCACAGAAGTGAATGTGCACGAGAGGGCCAGGCCTTCTATGGTCCTGCC-AAGTGGACTCTGGAGCTCACATCCACCACTCTGACCTTCTGCAGATGTCCTTCGGCCTTCTCCGCGTGTTCTCCATTGTGATCCCCTTTCTCTATGTTGGAACGCTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTCCCAGAGGATGATGATGATGATGATTAACAGGTAAGA-TTGCTTTACCCCTAGATGGACCAGGAGCAGCAGGAGCAGGAGGCAGGGTGGAGCATCTG i otoGar3.GL873526 C 0 I 1 s canFam3.chr10 46036081 336 - 69331447 TTGCTCTGAATTTTTCCAAGGACTTT--AAAATTGAGTAGTCGCATATTGTGGGCCTCGGGTCCACA----GGAGTGCCCCCGAA--GGCCAGGCCTTCTGTGGTCCCATCAGAGTGGGCTCTGGAGCTTATGGCCACCACTCTGACCCTCTGCAGATGTCCTTCGGCCTCCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTTGGGACGCTTATCAGCAAGAACTTTGCTGCTCTCCTCGAGGAGCATGACATTTTTGTCCCAGAAGATGACGATGACGATGACTAACAGGTAGGGTGTCCTCTTC-TCCAG-TGGAC---------------CAGAAAG--GGATGGGGCATCTG i canFam3.chr10 C 0 I 1 a score=460223.000000 s hg38.chr22_GL383582v2_alt 4460 42 + 162811 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACACTGG s panTro5.chr22 28757624 42 + 37823149 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACACTGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059777 42 + 50109623 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACACTGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034673 42 + 4464012 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACGCTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564503 42 - 115148730 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACACTGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187473 42 + 92844088 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACAATGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532319 42 - 96509753 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACAATGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7020917 42 - 13098629 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACAATGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3992667 42 - 4483953 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACAATGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619047 42 + 33263144 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACAATGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889593 42 - 14338769 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACAATGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836220 42 + 1946073 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACACTGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874746 42 - 2117846 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACATTGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8794948 42 - 16357246 TCTGTGATGCAGTGTGGCTT-GGTAGCAGCATTTGGACATTGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1268857 42 - 1807191 TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACACTGG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5625555 41 + 108171978 CCTGTG-TACAGTCTGGCCA-GGGAGCAGCATTTACACACTCA i micMur3.chr7 I 1 C 0 s otoGar3.GL873526 36239643 40 - 42659167 CCTATGATACTGTCTGGCCT-GGGAGAAGCG-TTACACACTG- i otoGar3.GL873526 I 1 C 0 s canFam3.chr10 46036418 43 - 69331447 ACTCTGATGTCCTTTGCCCTGGGTGGCAGTTTCTGATCACTTG i canFam3.chr10 I 1 C 0 e proCoq1.NW_012136747v1 4986409 28 - 6317780 I a score=570903.000000 s hg38.chr22_GL383582v2_alt 4502 45 + 162811 -----GGGCAGAAGCATTAATGAATTGGCCCACTTGGTGGCTAATGtttt s panTro5.chr22 28757666 45 + 37823149 -----GGGCAGAAGCATTAATGAATTGGCCCACTTGGTGGCTAATGtttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059819 45 + 50109623 -----GGGCAGAAGCATTAATGAATTGGCCCACTTGGTGGCTAATGtttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034715 45 + 4464012 -----GGGCAGAAGCATTAATGAATTGGCCCACTTGGTGGCTAATGtttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564545 45 - 115148730 -----GGGCAGAAGCATTAATGAATTGACCCACTTGGTGGCTAATGtttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187515 44 + 92844088 -----GGGCAGAAGCTTTAATGAATTGACCCACTTGGTGGCTAATGttt- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532361 44 - 96509753 -----GGGCAGAAGCTTTAATGAATTGACCCACTTGGTGGCTAATGttt- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7020959 44 - 13098629 -----GGGCAGAAGCTTTAATGAATTGACCCACTTGGTGGCTAATGttt- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3992709 39 - 4483953 -----GGGCAGAAGCTTTAATGAATTGACCCACTTGGTGGCTAA------ i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619089 44 + 33263144 -----GGGCAGAAGCTTTAATGAATTGACCCACTTGGTGGCTAATGttt- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889635 44 - 14338769 -----GGGCAGAAGCTTTAATGAATTGACCCACTTGGTGGCTAATGttt- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836262 44 + 1946073 -----GGGCAGAAGCTTTAATGAATTGATCCACTTGGTGGCTAATGttt- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874788 45 - 2117846 -----GGGCAGAAGCTTTAATGAATTGACCCACTTGGCGGCTAATGTTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8794990 45 - 16357246 -----GGGCAGAAGCTGTAATGAATTGACCCACTTGGTGGCTAATGTTTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1268899 45 - 1807191 -----GGGCAGAAGCTTTAATGAATTGACCCACTTGGTGGCTAATGTTTT i cebCap1.NW_016107750v1 C 0 I 372 s micMur3.chr7 5625596 45 + 108171978 -----GGGCAGAGGCTTTAATGAATTGACCCACTTGGTGGGTAATGTTTT i micMur3.chr7 C 0 I 397 s proCoq1.NW_012136747v1 4986437 45 - 6317780 -----GGGCAGAGGCTTTAATGAATTGACCCACTTGGCGGCTAATGTTTT i proCoq1.NW_012136747v1 I 28 I 398 s otoGar3.GL873526 36239683 45 - 42659167 -----GGGCAGAGGCTTTAATGAATTGACTCACTTGGTGGCTTATGTTTT i otoGar3.GL873526 C 0 I 7 s canFam3.chr10 46036461 47 - 69331447 AAGAAGTGCAGAC-CTTCAATAAATTGACTCACTTGGCTAATAGTTTT-- i canFam3.chr10 C 0 C 0 a score=-21469.000000 s hg38.chr22_GL383582v2_alt 4547 9 + 162811 c-------------------------gtttgttt s panTro5.chr22 28757711 13 + 37823149 cgttt---------------------gtttgttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059864 13 + 50109623 cgttt---------------------gtttgttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034760 13 + 4464012 cgttt---------------------gtttgttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564590 13 - 115148730 cgttt---------------------gtttgttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187559 3 + 92844088 -------------------------------ttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532405 3 - 96509753 -------------------------------ttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021003 3 - 13098629 -------------------------------ttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3992748 1 - 4483953 ---------------------------------T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619133 7 + 33263144 ---------------------------tttgttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889679 7 - 14338769 ---------------------------tttgttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836306 7 + 1946073 ---------------------------tttgttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874833 6 - 2117846 ----------------------------TATTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8795035 6 - 16357246 ----------------------------TATTTT i saiBol1.JH378157 C 0 C 0 s otoGar3.GL873526 36239735 34 - 42659167 CTTTTTCCCTGTGTTGGCTGAGAGTAACTAGTTT i otoGar3.GL873526 I 7 C 0 s canFam3.chr10 46036508 9 - 69331447 -------------------------ATTTTGCTT i canFam3.chr10 C 0 I 186 e proCoq1.NW_012136747v1 4986482 398 - 6317780 I e micMur3.chr7 5625641 397 + 108171978 I e cebCap1.NW_016107750v1 1268944 372 - 1807191 I a score=20007.000000 s hg38.chr22_GL383582v2_alt 4556 3 + 162811 g--tt s panTro5.chr22 28757724 3 + 37823149 g--tt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059877 3 + 50109623 g--tt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034773 3 + 4464012 g--tt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564603 5 - 115148730 gtttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187562 3 + 92844088 g--tt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532408 3 - 96509753 g--tt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021006 3 - 13098629 g--tt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3992749 3 - 4483953 G--tt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619140 3 + 33263144 g--tt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889686 3 - 14338769 g--tt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836313 3 + 1946073 g--tt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874839 3 - 2117846 G--CT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8795041 3 - 16357246 G--CT i saiBol1.JH378157 C 0 C 0 s otoGar3.GL873526 36239769 3 - 42659167 G--TT i otoGar3.GL873526 C 0 I 266 e canFam3.chr10 46036517 186 - 69331447 I e proCoq1.NW_012136747v1 4986482 398 - 6317780 I e micMur3.chr7 5625641 397 + 108171978 I e cebCap1.NW_016107750v1 1268944 372 - 1807191 I a score=33124.000000 s hg38.chr22_GL383582v2_alt 4559 4 + 162811 tttt s panTro5.chr22 28757727 4 + 37823149 tttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059880 4 + 50109623 tttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034776 4 + 4464012 tttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564608 4 - 115148730 tttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187565 4 + 92844088 tttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532411 4 - 96509753 tttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021009 4 - 13098629 tttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3992752 4 - 4483953 tttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619143 4 + 33263144 tttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889689 4 - 14338769 tttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836316 4 + 1946073 tttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1874842 4 - 2117846 TTTT i calJac3.chrUn_GL286373 C 0 I 351 s saiBol1.JH378157 8795044 4 - 16357246 TTTT i saiBol1.JH378157 C 0 I 340 e canFam3.chr10 46036517 186 - 69331447 I e otoGar3.GL873526 36239772 266 - 42659167 I e proCoq1.NW_012136747v1 4986482 398 - 6317780 I e micMur3.chr7 5625641 397 + 108171978 I e cebCap1.NW_016107750v1 1268944 372 - 1807191 I a score=939615.000000 s hg38.chr22_GL383582v2_alt 4563 159 + 162811 gagacggagtttcgctcttgttgcccaggctggagtgcaatggcatgatctcgactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctaccgggtagctgggattacagacatgcgccactgtgcctggctaattttgtatt s panTro5.chr22 28757731 159 + 37823149 gagacggagtttcgctcttgttgcccaggctggagtgcaatggcatgatctcgactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctaccgggtagctgggattacaggcatgcgccaccgtgcctggctaattttgtatt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41059884 159 + 50109623 gagacggagtttcgctcttgttgcccaggctggagtgcaatggcatgatctcgactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctaccgggtagctgggattacaggcatgcgccaccgtgcctggctaattttgtatt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034780 159 + 4464012 gagacggagtttcgctcttgttgcccaggctggagtgcaatggcatgatctccactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctaccgggtagcagggattacaggcatgcgccaccatgcctggctaattttgtatt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564612 159 - 115148730 gagacggagtctcgctcttgttgcctaggctggagtgcaatggcatgatctcgactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctaccgagtagctgggattacaggcatgcgccaccatgcccggctaattttgtatt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187569 157 + 92844088 gagacggagtttcgctc--gttacccaggctggagtgcaatggcatgatctcaactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctactgagtagcttggattacaggcatgtgccaccatgcctggctaattttgtatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532415 157 - 96509753 gagacggagtttcgctc--gttacccaggctggagtgcaatggcatgatctcaactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctactgagtagcttggattacaggcatgtgccaccatgcctggctaattttgtatt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021013 159 - 13098629 gagacggagtttcgctcttgttacccaggctagagtgcaatggcatgatctcaactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctactgagtagcttggattacaggcatgtgccaccatgcctggctaattttgtatt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3992756 159 - 4483953 gagacggagtttcgctcttgttacccaggctggagtgcaatggcatgatctcaactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctaccgagtagcttggattacaggcatgtgccaccatgcctggctaattttgtatt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619147 159 + 33263144 gagacggagtttcgctcttgttacccaggctggagtgcaatggcatgatctcaactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctactgagtagcttggattacgggcatgtgccaccatgcctggctaattttgtatt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889693 159 - 14338769 gagacggagtttcgctcttgttacccaggctggagtgcaatggcatgatctcaactcactgcaacctctgccttccaggttcaagcgattctcctgtctcagcctactgagtagcttggattacaggcatgtgccaccatgcctggctaattttgtatt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836320 159 + 1946073 gagacggagtttcgctcttgttacctaggctggagtgcaatggtatgatctcgactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctactgagtagcttggattacaggcatgcgctaccatgcctggctaattttgtatt i colAng1.NW_012115588v1 C 0 C 0 e canFam3.chr10 46036517 186 - 69331447 I e otoGar3.GL873526 36239772 266 - 42659167 I e proCoq1.NW_012136747v1 4986482 398 - 6317780 I e micMur3.chr7 5625641 397 + 108171978 I e cebCap1.NW_016107750v1 1268944 372 - 1807191 I e saiBol1.JH378157 8795048 340 - 16357246 I e calJac3.chrUn_GL286373 1874846 351 - 2117846 I a score=682379.000000 s hg38.chr22_GL383582v2_alt 4722 116 + 162811 tttagtagagacggggtttctccat-gttagccaggctagtctcaaactcccgacctcaggtgatccacccaccttggcctcccaaagtgctgtgattacaggcgtgagccactgcg s panTro5.chr22 28757890 116 + 37823149 tttagtagagacggggtttctccat-gttagccaggctagtctcaaactcccgacctcaggtgatccacccaccttggcctcccaaagtgctgtgattacaggcgtgagccactgcg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41060043 116 + 50109623 tttagtagagacggggtttctccat-gttagccaggctagtctcaaactcccgacctcaggtgatccacccaccttggcctcccaaagtgctgtgattacaggcgtgagccactgcg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3034939 116 + 4464012 tttagcagagacggggtttctccat-gttagccaggctagtctcaaactcccgacctcaggtgatccacccaccttggcctcccaaagtgctgtgattacaggcgtgaaccactgcg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564771 116 - 115148730 ttttgtagagacggggtttctcaat-gttagtcaggctagtctcaaactcccgaccccaggtgatccacccaccttggcctcccaaagtgttgtgattacaggcgtgagccgctgcg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187726 116 + 92844088 tttagtagagacagggtttctccat-gttagtcaggttggtctcaaactcccgacctcaggtgatccacccaccttggcctcccagagtgctgcgattacaggcgtgagtcactgcg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532572 116 - 96509753 tttagtagagacagggtttctccat-gttagtcaggttggtctcaaactcctgacctcaggtgatccacccaccttggcctcccagagtgctgcgattacaggcgtgagtcactgcg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021172 116 - 13098629 tttagtagagacagggtttctccat-gttagtcaggttggtctcaaactcccgacctcaggtgatccacccaccttggcctcccagagtgctgcgattacaggcgtgagtcactgcg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3992915 116 - 4483953 tttagtagagacagggtttctccat-gttagtcaggttggtctcaaactcccgacctcaggtgatccacccaccttggcctcccagagtgctgcgattacaggcgtgagtcactgcg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619306 116 + 33263144 tttagtagagacagggtttctccat-gttagtcaggttggtctcaaactcccgacctcaggtgatccacccaccctggcctcccagagtgctgcgattacaggcgtgagtcactgcg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889852 116 - 14338769 tttagtagagacagggtttctccat-gttagtcaggttggtctcaaactcccgacctcaagtgatccacccaccttggtctcccagagtgctgcgattacaggcgtgagtcactgcg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836479 116 + 1946073 tttagtagagacagggtttctccat-gttagtcaggttggtctcaaactcccgacctcaggtgatccacccacctcagcctcccagagtgctgcgattacaggcgtgagtccctgcg i colAng1.NW_012115588v1 C 0 C 0 s canFam3.chr10 46036703 88 - 69331447 TTTAGAAACTGCAGGTCTTCACCATGGTCAGTGAGGTGCACAGCAAACTCTATGCC-----TGTTCCATTCA----------------------GCTTTCTGGTGTTGGCTTCTG-- i canFam3.chr10 I 186 C 0 e otoGar3.GL873526 36239772 266 - 42659167 I e proCoq1.NW_012136747v1 4986482 398 - 6317780 I e micMur3.chr7 5625641 397 + 108171978 I e cebCap1.NW_016107750v1 1268944 372 - 1807191 I e saiBol1.JH378157 8795048 340 - 16357246 I e calJac3.chrUn_GL286373 1874846 351 - 2117846 I a score=50349.000000 s hg38.chr22_GL383582v2_alt 4838 8 + 162811 cccagccA s panTro5.chr22 28758006 8 + 37823149 cccagccA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41060159 8 + 50109623 cccagccA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035055 8 + 4464012 cccagccG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564887 8 - 115148730 cccagccG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187842 8 + 92844088 cccagccA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532688 8 - 96509753 cccagccA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021288 8 - 13098629 cctagccG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993031 8 - 4483953 cccagccG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619422 8 + 33263144 cccagccG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889968 8 - 14338769 cccagccG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836595 8 + 1946073 cccagccG i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36240038 8 - 42659167 CCCATTCA i otoGar3.GL873526 I 266 C 0 e canFam3.chr10 46036791 0 - 69331447 C e proCoq1.NW_012136747v1 4986482 398 - 6317780 I e micMur3.chr7 5625641 397 + 108171978 I e cebCap1.NW_016107750v1 1268944 372 - 1807191 I e saiBol1.JH378157 8795048 340 - 16357246 I e calJac3.chrUn_GL286373 1874846 351 - 2117846 I a score=153840.000000 s hg38.chr22_GL383582v2_alt 4846 16 + 162811 ACTTCATGTGCTCTAA s panTro5.chr22 28758014 16 + 37823149 ACTTCATGTGCTCTAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41060167 16 + 50109623 ACTTCATGTGCTCTAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035063 16 + 4464012 ACTTCATGTGGTCTAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564895 16 - 115148730 ACTTCATGTGCTCTAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187850 16 + 92844088 ACTTCATGTGCTCTAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532696 16 - 96509753 ACTTCATGTGCTCTAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021296 16 - 13098629 ACTTCATGTGCTCTAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993039 16 - 4483953 ACTTCATGTGCTCTAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619430 16 + 33263144 ACTTCATGTGCTCTAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889976 16 - 14338769 ACTTCATGTGCTCTAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836603 16 + 1946073 ACTTCATGTGCTCTAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1875197 16 - 2117846 ACTTCCTGTGCTCTAA i calJac3.chrUn_GL286373 I 351 C 0 s saiBol1.JH378157 8795388 16 - 16357246 ACTTCCTGTGCTCTAA i saiBol1.JH378157 I 340 C 0 s otoGar3.GL873526 36240046 16 - 42659167 ACTTTCTGTGTTCTAA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46036791 9 - 69331447 -------GTGCTCTAA i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4986482 398 - 6317780 I e micMur3.chr7 5625641 397 + 108171978 I e cebCap1.NW_016107750v1 1268944 372 - 1807191 I a score=406913.000000 s hg38.chr22_GL383582v2_alt 4862 44 + 162811 TATGTGCTGCATGGC---ATT-CTGTCAAGAGATGAGGACACTCCTG-T s panTro5.chr22 28758030 45 + 37823149 TATGTGCTGCATGGC---ATT-CTGTCAAGAGATGAGGACACTCCTGAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41060183 45 + 50109623 TATGTGCTGCATGGC---ATT-CTGTCAAGAGATGAGGACACTCCTGAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035079 44 + 4464012 TATGTGCTGCATGGC---ACT-CTGTC-AGAGATGAGGACACTCCTGAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564911 44 - 115148730 TATGTGCTGCATGGC---ATT-CTGTC-AGAGATGAGGACACTCCTGAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187866 45 + 92844088 TATGTGCTTCATGGC---ATTACTGTC-AGAGATGAGGACACTCCTGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532712 45 - 96509753 TATGTGCTTCATGGC---ATTACTGTC-AGAGATGAGGACACTCCTGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021312 45 - 13098629 TATGTGCTTCATGGC---ATTACTGTC-AGAGATGAGGACACTCCTGAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993055 45 - 4483953 TATGTGCTTCATGGC---ATTACTGTC-AGAGATGAGGACACTCCTGAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619446 45 + 33263144 TATGTGCTTCATGGC---ATTACTGTC-AGAGATGAGGACACTCGTGAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13889992 45 - 14338769 TATGTGCTTCATGGC---ATTACTGTC-AGAGATGAGGACACTCCTGAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836619 45 + 1946073 TATGTGCTTCATGGC---ATTACTGTC-AGAGATGAGGACACTCCTGAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1875213 45 - 2117846 TATGTGCTGCATGGC---ATCACTGTC-AGAGATGAGGACACTCCTGAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8795404 45 - 16357246 TACGTACTGCATGGC---ACCACTGTC-AGAGATGAGGACACTCCTGAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1269316 45 - 1807191 TATGTGCTGCATGGC---ATCACTGTC-AGAGATGAGGACACTCCTGAC i cebCap1.NW_016107750v1 I 372 C 0 s otoGar3.GL873526 36240062 48 - 42659167 TATATGCTGTGTGGCAGGATTACTGTC-GTAGATAAGGTTACTCTTGAC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46036800 45 - 69331447 TATGTGCCATGTGGC---TGC-CTTTCTGTAGCTAAGGATGGCTCTAGC i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4986482 398 - 6317780 I e micMur3.chr7 5625641 397 + 108171978 I a score=663669.000000 s hg38.chr22_GL383582v2_alt 4906 49 + 162811 TCCTTAGCCTGGCATTCAAGGCTTGCCATAATCTGGTCACACCTCTTAT s panTro5.chr22 28758075 49 + 37823149 TCCTTAGCCTGGCATTCAAGGCTTGccataatctggtcacacctcttat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41060228 49 + 50109623 TCCTTAGCCTGGCATTCAAGGCTTGCCATAAtctggtcacacctcttat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035123 49 + 4464012 TCCTTAGCCTGGCATTCAAGGCTTGCCATAAtctggtcacacctcttat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106564955 48 - 115148730 TCCTTAGCCTGGCATTCAAGGC-TGCCATAAtctggtcacacctcttat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187911 49 + 92844088 TCCTTAGCCTGGCATTCAAGGCTTGCcataatctggtcacacctcttat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532757 49 - 96509753 TCCTTAGCCTGGCATTCAAGGCTTGCCATAAtctggtcacacctcttat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021357 49 - 13098629 TCCTTAGCCTGGCATTCAAGGCTTGCcataatctggtcacacctcttat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993100 49 - 4483953 TCCTTAGCCTGGCATTCAAGGCTTGCCATAATCTGGTCACACCTCTTAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619491 49 + 33263144 TCCTTAGCCTGGCATTCAAGGCTTGCCATAAtctggtcacacctcttat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13890037 49 - 14338769 TCCTTAGCCTGGCATTCAAGGCTTGCcataatctggtcacacctcttat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836664 49 + 1946073 TCCTTAGCCTGGCATTCAAGGCTTGccataatctggtcacacaccttat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1875258 48 - 2117846 TCCTTA-CCTGGCATTCAAGGCTTGCCATGAtttggtcgtgcctcttat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8795449 48 - 16357246 TCCTTA-CCTGGCATTCAAGGCTTGCCATGATTTGGTCACGCCTCTTAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1269361 48 - 1807191 TCCTTA-CCTGGCATTCAAGGCTTGccatgatttggtcatgcctcttat i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5626038 49 + 108171978 TCCTTAGCCTGGCATTCAAGGTTTGCCATAATCTGATCATACTTTTTAT i micMur3.chr7 I 397 C 0 s proCoq1.NW_012136747v1 4986880 49 - 6317780 TCCTTAGTCTGGCATTAAAGGCTTGCCGTAATCTGGTCATACCTCTTAT i proCoq1.NW_012136747v1 I 398 C 0 s otoGar3.GL873526 36240110 49 - 42659167 TCCTTAGCCTGGCATTCAAGGCTTGCCATAATCTGTTCACACAtttgtt i otoGar3.GL873526 C 0 I 290 s canFam3.chr10 46036845 49 - 69331447 CCCGTGGTCTGACATTGAAGGCGTGCcatgatctggtcacacctgttcc i canFam3.chr10 C 0 C 0 a score=311483.000000 s hg38.chr22_GL383582v2_alt 4955 21 + 162811 TCCAGTCTCATCTTCCATATT s panTro5.chr22 28758124 21 + 37823149 tccagtctcatcttccatatt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41060277 21 + 50109623 tccagtctcatcttccatatt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035172 21 + 4464012 tccagtctcatcttccatatt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106565003 21 - 115148730 tccagtctcttcttccatatt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187960 21 + 92844088 tccagtctcatcttccatatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532806 21 - 96509753 tccagtctcatcttccatatt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021406 21 - 13098629 tccagtctcatcttccatatt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993149 21 - 4483953 TCCAGTCTCATCTTCCATATT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619540 21 + 33263144 tccagtctcatcttccatatt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13890086 21 - 14338769 tccagtctcatcttccatatt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836713 21 + 1946073 tccagtctcatcttccatatt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1875306 21 - 2117846 tccagtctcatcttccatatt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8795497 21 - 16357246 TCCAGTCTCATCTTCCGTATT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1269409 21 - 1807191 tccagtctcatcttccatatt i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5626087 21 + 108171978 CCCAGTCTCATTTTCCATATT i micMur3.chr7 C 0 I 466 s proCoq1.NW_012136747v1 4986929 21 - 6317780 CACAGTCTCATTTTCCATATT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36240449 21 - 42659167 TCCAATCTCATCTTCTATATT i otoGar3.GL873526 I 290 C 0 s canFam3.chr10 46036894 21 - 69331447 tccagcctcatcttccacatt i canFam3.chr10 C 0 C 0 a score=115266.000000 s hg38.chr22_GL383582v2_alt 4976 10 + 162811 TCCAGCCACA s panTro5.chr22 28758145 10 + 37823149 tccagccaca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41060298 10 + 50109623 tccagccaca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035193 10 + 4464012 tccagccaca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106565024 10 - 115148730 tccagccaca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187981 10 + 92844088 tccagccaca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532827 10 - 96509753 tccagccaca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021427 10 - 13098629 tccagccaca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993170 10 - 4483953 TCCAGCCACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619561 10 + 33263144 tccagccaca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13890107 10 - 14338769 tccagccaca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836734 10 + 1946073 tccagccaca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1875327 10 - 2117846 tccagccacc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8795518 10 - 16357246 TCCAGCCACC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1269430 10 - 1807191 tccagccacc i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4986950 10 - 6317780 CCCACCCACA i proCoq1.NW_012136747v1 C 0 I 412 s otoGar3.GL873526 36240470 10 - 42659167 CCTACTCACG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46036915 10 - 69331447 cccaactaca i canFam3.chr10 C 0 C 0 e micMur3.chr7 5626108 466 + 108171978 I a score=184263.000000 s hg38.chr22_GL383582v2_alt 4986 17 + 162811 CACCGATTCCCAGTATT s panTro5.chr22 28758155 17 + 37823149 caccgattcccagtatt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41060308 17 + 50109623 caccgattcccagtatt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035203 17 + 4464012 caccgattcccagtatt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106565034 17 - 115148730 cgccgattcccagtatt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84187991 17 + 92844088 caccaattcccagtatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532837 17 - 96509753 caccgattcccagtatt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021437 17 - 13098629 caccgattcccagtatt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993180 17 - 4483953 CACCGATTCCCAGTATT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619571 17 + 33263144 caccgattcccagtatt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13890117 17 - 14338769 caccgattcccagtatt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836744 17 + 1946073 caccgattcccagtatt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1875337 17 - 2117846 cactgatccccagtatt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8795528 17 - 16357246 CACCGATTCCCAGTATT i saiBol1.JH378157 C 0 I 333 s cebCap1.NW_016107750v1 1269440 17 - 1807191 caccgatctccagtatt i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36240480 17 - 42659167 TACCTATCCTTAATAGT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46036925 17 - 69331447 tgcctatccccagtatt i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4986960 412 - 6317780 I e micMur3.chr7 5626108 466 + 108171978 I a score=1176726.000000 s hg38.chr22_GL383582v2_alt 5003 121 + 162811 CACCATTTCTTGAGTT-TTCA-CACTCATACCCACCCCCAAACATTGGCTCATTGTTCCTCCCACA-------------TGGAAGGCTCC---TTCCCAGAG---CTC-TGGGTCTTAATTCCA-CCCATTCTACAGTGTCTTT s panTro5.chr22 28758172 121 + 37823149 caacatttcttgagtt-ttca-cactcatacccacccccaaacattggctcattgttcctcccaca-------------tggaaggctcc---ttcccagag---ctc-tgggtcttaattcca-cccattctacagtgtcttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41060325 121 + 50109623 caccatttcttgagtt-ttca-cactcatacccacccccaaacattggctcattgttcctcccaca-------------tggaaggctcc---ttcccagag---ctc-tgggtcttaattcca-cccattctacagtgtcttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035220 121 + 4464012 caccatttcttgagtt-ttca-cactcatacccacccccaaacattggctcattgttcctcccaca-------------tggaaggctcc---ttcccagag---ctc-tgggtcttaattcca-cccattctacagtgtcttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106565051 121 - 115148730 caccatttcttgagtt-ttca-tgctcatacccacccccaaacattggctcattgttcctcccaca-------------tggaaggctct---ttcccagag---ctc-tgggtcttaattcca-cccatcctacagtgtcttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84188008 122 + 92844088 caccatttcttgagtt-ttca-cactcatacccacccccaaacattggctcattgttcctcccaca-------------tggaaggctgt---ttccgagag---ctc-tgggtcttaattccaccccattctacagtgccttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532854 122 - 96509753 caccatttcttgagtt-ttca-cactcatacccacccccaaacattggctcattgttcctcccaca-------------tggaaggctgt---ttccgagag---ctc-tgggtcttaattccaccccattctacagtgccttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021454 122 - 13098629 caccatttcttgagtt-ttca-cactcatacccacccccaaacattggctcattgttcctcccaca-------------tggaaggctgt---ttccgagag---ctc-tgggtcttaattccaccccattctacagtgtcttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993197 122 - 4483953 CACCATTTCTTGAGTT-TTCA-CACTCATACCCACCCCCAAACATTGGCTCATTGTTCCTCCCACA-------------TGGAAGGCTGT---TTCTGAGAG---CTC-TGGGTCTTAATTCCACCCCATTCTACAGTGTCTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619588 123 + 33263144 caccatttcttgagtt-ttcaccactcatacccacccccaaacattggctcattgttcttcccaca-------------tggaaggctgt---ttccgagag---ctc-tgggtcttaattccaccccattctacagtgtcttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13890134 122 - 14338769 caccatttcttgagtt-ttca-cactcatacccacccccaaacattggctcattgttcctcccaca-------------tggaaggctgt---ttctgagag---ctc-tgggtcttaattccaccccattctacagtgtcttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836761 121 + 1946073 caccatttcttgagtt-ttca-cactgatacccacccccaaacattggctcattgttcctcccaca-------------tggaaggctgt---ttccgagag---ctc-tgggtcttaattcca-cccattctacagtgtcttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1875354 124 - 2117846 caccatttcttgagtt-tgca-cactcatacccacccccaaatattggctcattgttcctcccaca-------------tggaaggctct---ttcccagaggctctt-tgggtcttaattcta-cccatccttcagtgtcttt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8795878 124 - 16357246 cACCATTTCTTAAGGT-TGCA-CACTCATACCCACCCCCAAATACTGGCTCATTGTTCCTCCCACA-------------TGGAAGGCTCT---TTCCCAGAGGCTCTT-TGGGTCTTAATTCTA-CCCATCCTTCAGTGTCTTT i saiBol1.JH378157 I 333 C 0 s cebCap1.NW_016107750v1 1269457 124 - 1807191 caccatttcttgagtt-tgca-cactcatacccacccccaaatattggctcattgttcctcccaca-------------tggaaggctct---ttcccagaggctctt-tgggtcttaattcta-cccatccttcagtgtcttt i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36240497 120 - 42659167 CACCATTTCTTAAATTACCCA-CACTTTTATTCAACCTCAAGCATTGACTCATTG-TCCTCCCACA---------------GAGGGCTCT---TTCCCAATG---TTCTTGTATTTTAATTCTA-CCCAtttttccatggtttt i otoGar3.GL873526 C 0 I 273 s canFam3.chr10 46036942 132 - 69331447 cactatttcttgaatcaccca-catgcttacccactcccaagcggtggcttactacccccccccccccccccgcccaattggaaaaatgttaattcccacta---ctc-------ccaatgaaa-acagttcttcatgggcttt i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4986960 412 - 6317780 I e micMur3.chr7 5626108 466 + 108171978 I a score=309606.000000 s hg38.chr22_GL383582v2_alt 5124 37 + 162811 ---GAAGTCTT-----CGTTCCTCCTTTCATTTGAAAGTTGACGG s panTro5.chr22 28758293 37 + 37823149 ---gaagtctt-----cgttcctcctttcatttgaaagttgacgg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41060446 37 + 50109623 ---gaagtctt-----cgttcctcctttcatttgaaagttgacgg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035341 37 + 4464012 ---gaagtctt-----ccttcctcctttcatttgaaagttgacgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106565172 37 - 115148730 ---gaagtctt-----ccttcctcctttcatttgaaagttgatgg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84188130 37 + 92844088 ---gaagtctt-----ccttcctcccttcatttgaaagttgacta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87532976 37 - 96509753 ---gaagtctt-----ccttcctcccttcatttgaaagttgacta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021576 37 - 13098629 ---gaagtctt-----ccttcctcccttcatttgaaagttgacta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993319 37 - 4483953 ---GAAGTCTT-----CCTTCCTCCCTTCATTTGAAAGTTGACTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619711 37 + 33263144 ---gaagtctt-----ccttcctcccttcatttgaaagttgacta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13890256 37 - 14338769 ---gaagtctt-----ccttcctcccttcatttgaaagttgacta i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836882 37 + 1946073 ---gaagtctt-----ccttcctcccttcatttgaaagttgacta i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1875478 33 - 2117846 ---gaagtctt-----ccttcct---TTCATTTGAAAG-TGACTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8796002 33 - 16357246 ---GAAGTCTT-----CCTTCCT---TTCATTTGAAAG-TGACTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1269581 29 - 1807191 ---gaagt---------cttcct---ttcatttgaaag-tgactg i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36240890 41 - 42659167 ---GATGTCTTTGGTCTTTTCATCCCTTCATTTGAAAG-AGACTG i otoGar3.GL873526 I 273 C 0 s canFam3.chr10 46037074 39 - 69331447 gaggaaaactt-----cccccattcccccatttgaaag-tgacta i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4986960 412 - 6317780 I e micMur3.chr7 5626108 466 + 108171978 I a score=430541.000000 s hg38.chr22_GL383582v2_alt 5161 42 + 162811 CTCCTTCCTCTAAGCAACCAGTACC---------TCTCTTCAAATACTCGG s panTro5.chr22 28758330 42 + 37823149 ctccttcctctaagcaaccagtacc---------tctcttcaaatactcgg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41060483 42 + 50109623 ctccttcctctaagcaaccagtacc---------tctcttcaaatactcgg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035378 42 + 4464012 ctccttcctctgagcaaccagtacc---------tctcttcaaatactcgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106565209 42 - 115148730 ctccttcctctgagcaaccagtacc---------tctcttcaaatactcgg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84188167 51 + 92844088 ctccttcctctgagcaaccagtacctccagtacctctcttcaaatactcgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87533013 51 - 96509753 ctccttcctctgagcaaccagtacctccagtacctctcttcaaatactcgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021613 51 - 13098629 ctccttcctctgagcaaccagtacctccagtacctctcttcaaatactcgg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993356 51 - 4483953 CTCCTTCCTCTGAGCAACCAGTACCTCCAGTACCTCTCTTCAAATACTCGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619748 51 + 33263144 ctccttcctctgagcaaccagtacctccagtacctctcttcaaatactcgg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13890293 51 - 14338769 ctccttcctctgagcaaccagtacctccagtacctctcttcaaatactcgg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836919 51 + 1946073 ctccttcctctgagcaaccagtacctccagtacatctcttcaaatactcgg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1875511 40 - 2117846 CTCCTTCCTCTGAGCAACCAGTACC-----------TCTTCAAACACTCAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8796035 40 - 16357246 CTCCTTCCTCTGAGCAACCAGTACC-----------TCTTCAAACACTCAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1269610 40 - 1807191 ctccttcctctgagcaaccagtacc-----------tcttcaaacactcag i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4987372 42 - 6317780 ctctttcctctgagtgaccagtacc---------tctcttaaaacactctg i proCoq1.NW_012136747v1 I 412 C 0 s otoGar3.GL873526 36240931 39 - 42659167 -TTCTTCCTGTGAGTGACCGGTAA-----------CTCTTAAAACGCTCCA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46037113 28 - 69331447 ctgtgccctctgactgaccagtatc---------tct-------------- i canFam3.chr10 C 0 C 0 e micMur3.chr7 5626108 466 + 108171978 I a score=785940.000000 s hg38.chr22_GL383582v2_alt 5203 67 + 162811 TATTATGTGGCTAAACACACACAAAG--CAAAATtttactagactctgagcttcttgctggcaggggac s panTro5.chr22 28758372 67 + 37823149 tattatgtggctaaacacacacaaac--caaaattttactagactctgagcttcttgctggcaggggac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41060525 67 + 50109623 tattatgtggctaaacacacacaaac--caaaattttactagactctgagcttcttgctggcaggggac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035420 67 + 4464012 tattatgtggctaaacacacacaaac--caaaattttactagactctgagcttcttgctggcaggggac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106565251 67 - 115148730 tattatgtggccaaacacacacaaac--caaaattttactagactctgagcttcttgctggcaggggac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84188218 67 + 92844088 tatcatgtgtctaaacacactcaaac--caaaattttactagactctgagcttcttgctggcaggggac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87533064 67 - 96509753 tatcatgtgtctaaacacactcaaac--caaaattttactagactctgagcttcttgctggcaggggac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021664 67 - 13098629 tatcatgtgtctaaacacactcaaac--caaaattttactagactctgagcttcttgctggcaggggac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993407 67 - 4483953 TATTATGTGTCTAAACACACTCAAAC--CAAAATtttactagactctgagcttcttgctggcaggggac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619799 67 + 33263144 tattatgtgtctaaacacactcaaac--caaaattttactagactctgagcttcttgctggcaggggac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13890344 67 - 14338769 tattatgtgtctaaacacactcaaac--caaaattttactagactctgagcttcttgctggcagaggac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 836970 64 + 1946073 tattatgtgtctaaacatactcaaac--caaaattttactagactctgag---cttgctggcaggagac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1875551 64 - 2117846 TATTGTGTGTCTAAA-ACACACTAAC--CAAAATTTTACTCCACTC--agctttttgctggcaggggat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8796075 67 - 16357246 TTTTGTGTGTCTAAACACACACAAAC--CAAAATTTTACACCACTCTGAGCTTTCTGCTGGCAGGGGAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1269650 67 - 1807191 tattgtgtgtctaaacacacacaaac--caaaattttactccactctgagctttttgctggcaggggat i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5626574 63 + 108171978 TATTATGTGCTTAAACACAC----AC--CAAAATtctactaaactatgagctatttgctggcagggaac i micMur3.chr7 I 466 I 3 s proCoq1.NW_012136747v1 4987414 63 - 6317780 tagtatgtgcttaaacacac----ac--caaaattctactagactatgagctgtttgctggcagggaac i proCoq1.NW_012136747v1 C 0 I 3 s otoGar3.GL873526 36240970 63 - 42659167 TGTTATGTGCTTAAACATAC----GC--CAAAATtctactagactatgagctgtttgctggcagggaac i otoGar3.GL873526 C 0 I 5 s canFam3.chr10 46037141 64 - 69331447 -----tgtgataggatacacttacacctctaacttttgctagactaagagctgcttgctggcaagaaac i canFam3.chr10 C 0 I 115 a score=5348673.000000 s hg38.chr22_GL383582v2_alt 5270 430 + 162811 gttttttatacattgcggcccccagtgcctggcctgtggtgaatgcccagttaacgtGCGCATGAACAACCAAACGTGCTCAAAGCTGCCTTTCTCCTGCCATGTTTGATAGAAGCACTTTGTGGAAT---TCTTTCAGTCTGCGGATGGAAGACTACGCTGTTGCCCAGTTCACTGCTGCTTTCCTTTCTTACAGG---------AATTACAGAAAGGAGAAAGCACTAACTGAA----GAAATGGTGATGCTCTCAGTTTCTCTGCCTTCCCTATCAGCAGAAAGGCTCGGGGAAGGCCCT-----CAGCCTCCC-AGTCTGGTGAAGCTTCCTGTATGGTCCATGACCGTATTCCA---CCCCAGGCTCTGGGAGGCTCCC-TGAGATGTGCTGTCCACTAAGCACTGCACAAACAAGCAATCAAATTATGAATAAACATAATAAATATCAGC s panTro5.chr22 28758439 425 + 37823149 gttttttatacattgcggcccccagt-----ggctgtggtgaatgcccagttaatgtGCGCATGAACAACCAAACGTGCTCAAAGCTGCCTTTCTCCTGCCATGTTTGATAGAAGCACTTTGTGGAAT---TCTTTCAGTCTGCGGATGGAAGACTACGCTGTTGCCCAGTTCACTGCTGCTTTCCTTTCTTACAGG---------AATTACAGAAAGGAGAAAGCACTAACTGAA----GAAATGGTGATGCTCTCAGTTTCTCTGCCTTCCCTATCAGCAGAAAGGCTCGGGGAAGGCCCT-----CAGCCTCCC-AGTCTGGTGAAGCTTCCTGTATGGTCCATGACCATATTCCA---CCCCAGGCTCTGGGAGGCTCCC-TGAGATGTGCTGTCCACTAAGCACTGCACAAACAAGCAATCAAATTATGAATAAACATAATAAATATCAGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41060592 430 + 50109623 gtttattatacattgcggcccccagtgcctggcctgtggtgaatgcccagttaatgtGCGCATGAACAACCAAACGTGCTCAAAGCTGCCTTTCTCCTGCCATGTTTGATAGAAGCACTTTGTGGAAT---TCTTTCAGTCTGCGGATGGAAGACTACGCTGTTGCCCAGTTCACTGCTGCTTTCCTTTCTTACAGG---------AATTACAGAAAGGAGAAAGCACTAACTGAA----GAAATGGTGATGCTCTCAGTTTCTCTGCCTTCCCTATCAGCAGAAAGGCTCGGGGAAGGCCCT-----CAGCCTCCC-AGTCTGGTGAAGCTTCCTGTATGGTCCATGACCATATTCCA---CCCCAGGCTCTGGGAGGCTCCC-TGAGATGTGCTGTCCACTAAGCACTGCACAAACAAGCAATCAAATTATGAATAAACATAATAAATATCAGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035487 430 + 4464012 gttttttatacattgcggcccccagtgcctggcctgtggtgaatgcccagttaacgtGCGCATGAACAACCAAACGTGCTCAAAGCTGCCTTTCTCCTGCCATGTTTGATAGAAGCACTTTGTGGAAT---TCTTTCAGTCTGCGGATGGAAGACTACGCTGTTGCCCAGTTCACTGCTGCTTTCCTTTCTTACAGG---------AATTACAGAAAGGAGAAAGCACTAACTGAA----GAAATGGTGATGCTCTCAGCTTCTCTGCCTTCCCTATCAGCAGAAAGGCTCGGGGAAGGCCCT-----CAGCCTCCC-AGTCTGGTGAAGCTTCCTGTATGGTCCATGACCGTATTCCA---CCCCAGGCTCTGGGAGGCTCCC-TGAGATGTGCTGTCCACTACGCACTGCACAAACAAGCAATCAAATTATGAATAAACATAATAAATATCAGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106565318 428 - 115148730 gttttttatacatttgggcccccagtgcctggcccatggtgaatgcccagttaatgtGCGCATAAACAATCAAACGTGCTCAAAGCTGCCTTTCTCCTGCCATGTTTGATAGAAGCACTTTGTGGAAT---TCTTTCAGTCTGTGGATGAAAGACTATGCTGTTGCCCAGTTCACTGCTGCTTTCCTTTCTTCCAGG---------AATTACAGAAAGGAGAAAGCACTAACTGAA----GAAATGGTGATGCTCTCAGCTTCTCTGCCTTCCCTATCAGCAGAAAGGCCT-------TCCCTATCACCAGCCTCCC-AGTCTGGTGAAGCTTCCTGTATGGTCCATGACCATATCCCA---CCCCAGGCTCTGAGAGGCTCCC-TGAGATGTGCTGTCCACTAAGCACTGCGCAAACAAGCAATCAAATTATGAATAAACATAATAAATATCAGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84188285 430 + 92844088 gttttttatacatttgggcccccagtgcctggcccgtggtgaatgcccagttaacatatgCATAAACAATCAAACGTGCTCAAAGCTGCCTTTCTCCTGCCATGTTTGATAGAAGCACTTTGTGGAAT---TCTTTCAGTCTGCGGATGGAAGGCTACTCTGTTGCCCAGTTCACTGCTGCTTTCCTTTCTTCCAGG---------CATTACAGAAAGGAGAAAGCAGTAACTGAA----GAAATGGTGATGCTCTCAGCTTCTCTGCCTTCCCTATCAGCAGAAGGGCTCAGGGAAGGCCCT-----CAGCCTCCC-AGTCTGGTGAAGCTTCCTGTATGGTCCATGACCATATCCTA---CCCCAGGCTCTGGCAGGCTCCC-TGAGATGTGCTGTCCACTAAGCACTGCACAAACAAGCAATCAAATTATGAATAAACATAATAAATATCAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87533131 430 - 96509753 gttttttatacatttgggcccccagtgcctggcccgtggtgaatgcccagttaacatatgCATAAACAATCAAACGTGCTCAAAGCTGCCTTTCTCCTGCCATGTTTGATAGAAGCACTTTGTGGAAT---TCTTTCAGTCTGCGGATGGAAGGCTACTCTGTTGCCCAGTTCACTGCTGCTTTCCTTTCTTCCAGG---------CATTACAGAAAGGAGAAAGCAGTAACTGAA----GAAATGGTGATGCTCTCAGCTTCTCTGCCTTCCCTATCAGCAGAAGGGCTCAGGGAAGGCCCT-----CAGCCTCCC-AGTCTGGTGAAGCTTCCTGTATGGTCCATGACCATATCCTA---CCCCAGGCTCTGGCAGGCTCCC-TGAGATGTGCTGTCCACTAAGCACTGCACAAACAAGCAATCAAATTATGAATAAACATAATAAATATCAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7021731 430 - 13098629 gttttttatacatttgggcccccagtgcctggcccgtggtgaatgcccagttaacatatgCATAAACAATCAAACGTGCTCAAAGCTGCCTTTCTCCTGCCATGTTTGATAGAAGCACTTTGTGGAAT---TCTTTCAGTCTGCGGATGGAAGGCTACTCTGTTGCCCAGTTCACTGCTGCTTTCCTTTCTTCCAGG---------CATTACAGAAAGGAGAAAGCAGTAACTGAA----GAAATGGTGATGCTCTCAGCTTCTCTGCCTTCCCTATCAGCAGAAGGGCTCAGGGAAGGCCCT-----CAGCCTCCC-AGTCTGGTGAAGCTTCCTGTATGGTCCATGACCATATCCTA---CCCCAGGCTCTGGCAGGCTCCC-TGAGATGTGCTGTCCACTAAGCACTGCACAAACAAGCAATCAAATTATGAATAAACATAATAAATATCAGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993474 430 - 4483953 gttttttatacatttgagcccccagtgcctggcccgtggtgaatgcccagttaacatatgCATAAACAATCAAACGTGCTCAAAGCTGCCTTTCTCCTGCCATGTTTGATAGAAGCATTTTGTGGAAT---TCTTTCAGTCTGCGGATGGAAGACTACTCTGTTGCCCAGTTCACTGCTGCTTTCCTTTCTTCCAGG---------CATTATAGAAAGGAGAAAGCAGTAACTGAA----GAAATGGTGATGCTCTCAGCTTCTCTGCCTTCCCTATCAGCAGAAGGGCTCAGGGAAGGCCCT-----CAGCCTCCC-AGTCTGGTGAAGCTTCCTGTATGGTCCATGACCATATCCTA---CCCCAGGCTCTGGCAGGCTCCC-TGAGATGTGCTGTCCACTAAGCACTGCACAAACAAGCAATCAAATTATGAATAAACATAATAAATATCAGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24619866 430 + 33263144 gttttttatacatttgggcccccagtgcctggcctgtggtgaacgcccagttaacatatgCATAAACAATCAAACGTGCTCAAAGCTGCCTTTCTCCTGCCATGTTTGACAGAAGCACTTTGTGGAAT---TCTTTCAGTCTGCGGATGGAAGACTACTCTGTTGCCCAGTTCACTGCTGCTTTCCTTTCTTCCAGG---------CATTACAGAAAGGAGAAAGCAGTAACTGAA----GAAATGGTGATGCTCTCAGCTTCTCTGCCTTCCCTATCAGCAGAAGGGCTCAGGGAAGGCCCT-----CAGCCTCCC-AGTCTGGTGAAGCTTCCTGTATGGTCCATGACCATATCCTA---CCCCAGGCTCTGGCAGGCTCCC-TGAGATGTGCTGTCCACTAAGCACTGCACAAACAAGCAATCAAATTATGAATAAACATAATAAATATCAGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13890411 430 - 14338769 gttttttatacatttgggcccccagtgcctggcccgtggtgaatgcccagttaacatatgCATAAACAATCAAACATGCTCAAAGTTGCCTTTCTCCTGCCATGTTTGATAGAAGCACTTTGTGGAAT---TCTTTCAGTCTGCGGATGGAAGACTACTCTGTTGCCCAGTTCACTGCTGCTTTCCTTTCTTCCAGG---------CATTACAGAAAGGAGAAAGCAGTAACTGAA----GAAATGGTGATGCTCTCAGCTTCTCTGCCTTCCCTATCAGCAGAAGGGCTCAGGGAAGGCCCT-----CAGCCTCCC-AGTCTGGTGAAGCTTCCTGTATGGTCCATGACCATATCCTA---CCCCAGGCTCTGGCAGGCTCCC-TGAGATGTGCTATCCACTAAGCACTGCACAAACAAGCAATCAAATTATGAATAAACATAATAAATATCAGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 837034 430 + 1946073 gttttttatacgtttgggcccccagtgcctggcccgtggtgaatgcccagttaatatatgCATAAACAATCAAACGTGCTCAAAGCTGCCTTTCTCCTGCCATGTTTGATAGAAGCACTTTGTGGAAT---TCTTTCAGTCTGTGGATGGAAGACTACTCTATTGCCCAGTTCACTGCTGCTTTCCTTTCTTCCAGG---------CATTACAAAAAGGAGAAAGCAGTAACTGAA----GAAATGGTGATGCTCTCAGCTTCTCTGCCTTCCCTATCAGCAGAAGGGCTCAGGGAAGGCCCT-----CAGCCTCCC-AGTCTGGTGAAGCTTCCTGTATGGTCCATGACCATGTCCCA---CCCCAGGCTCTGGCAGGCTCCC-TGAGATGTGCTGTCCACTAAGCACTGCACAAACAAGCAATCAAATTATGAATAAACATAATAAATGTCAGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1875615 430 - 2117846 gttttttatacttttgggtccccagtgcctgacctgtggtgaatgcccatttaacgtatgcataagtaatcaaatGTGCTCAAAGCTGCCCTTCTTCTGCCATGTTTGACAGAAGCACTTTGTGGAAT---TCTTTCAGTGTGTGGATGGAAAACTGCTCTGTTACCCAGTTCACTGCTGCTTTCCTTTCTTCCAGG---------AATTACAGAAAGCAGAAAGCACTAACTGAA----GAAATGGTGATGCTCTCAGCCTGTCTGCCTTCCCTATCAGCAG---GACTCAGGGAAAGCCCT-----CAACCTCCC-AGTCTGGTGGAGCTGCCTCTGTGGTCCATGACTGTATCCCAGATCCCCAGGCTCTGGAAGGCTCCC-TGAGATGTGCTGTCCACTAAGCACTGGACTAACAAGCAATCACATTATTAATATACATAATAAATGCCAGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8796142 427 - 16357246 GTTTTTTATACTTTTGGGCTCCCAGTGCCTGGCCCGTGGTGAATGCCCATTTAACGTATGCATAAATAATCAAATGTGCTCAAAGCTGCCCTTCTCCTGCCATGTTTGATAGAAGCGCTTTGTGGAAT---TCTTTCAGTGTGTGGATGGAAGACTGCTCTCTTGCCCAGTTCACTGCTGCTTTCCTTTCTTCCAGG---------AATTACAGAAAGCGGAAAGCACTAACTGAA----GAAATGGTGATGCTCTCAGCCTCTCTGCCTTCCCTATTAGCAG---GATTCAGGGAAAGCCCT-----CAACCTCCC-AGTCTGGTGAAGCTGCCTCTGTGGTCCATGACTGTATCCCAGATCCCCAGGCTCTGGAAGGCTCCC-TGAGATGTGCTGTCCACAAAGCACTGGACTAACAAACAATCACATTAAGAATAAACATAAT---TGCCAGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1269717 430 - 1807191 gttttttatacttttgggcccccagtgcctggcccatgttgaatgcccatttaacgtatgcataaataatcaaatGTGCTCAAAGTGGCCCTTCTCCTGCCATGTTTGATAAAAGCACTTTGTGGAAT---TCTTTCAGTATGTGAATGGAAGACTGCTCTGTTACCCAGTTCACTGCTGCTTTCCTTTCTTCCAGG---------AATTACAGAAAGCAGAAAGCACTAACTGAA----GAAATGGTGATGCTCTCAGCCTCTCTGCCTTCCCTATCAGCAG---GACTCAGGGAAAGCCCT-----CAACCTCCC-AGTCTGGTGAAGCTGCCTCTGTGGTCCATGACTGTATCCCAGATCCCCAGGCTCTGGAAGGCTCCC-TGAGATGTGCTGTCCACTAAGCACTGGACTAACAAGCAATCACATTATGAATAAACATAATAAATGCCAGC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5626640 443 + 108171978 tttttttatacctttgggcccccagtgccaggtctgtggtgaatgccctgttaatatctgAATCCATAATCAAACATACTCAAAGCTGCCTTTCTCCTGTCATGTTTGGTAAAACTCCTCTGTGGAAT-TCTCTTTCAGGATGTGGATGGAGGACTGCTGTATTGCCCAGTTTACTGCTGCTTTCCTTTCTTCCAGGGTGTGGAGGAAGTTCAGAATGGAGAAGGTGCTAACTGAA----GACATGGTGATGCTCTCAGCCTCTCTTCCTTCCTTGTCAGCAGAAGGGCTCAGGGAAAGCCCT-----CAGCCTCCCTAGTCCAGTGAAGCCTCCTGCATGGTCTGTGACCATAGCCCAGATCTCCAGGCTCTGGGAGGTTCCC-CAAGATGTGCTGTCCACTGGGCACCAG-AATACAAGCAACCAAA-TATGAATAAACATAATAAACATCAGC i micMur3.chr7 I 3 I 2292 s proCoq1.NW_012136747v1 4987480 441 - 6317780 tttttttatacctttgggcccccagtgccaggcctgtggtgaatgccctgttaatatgtgAATCCATAATCAAACATACTCAAAGCTGCCTTTCTCCTGCCATGTTTGGTGAAACTACTCTGTGGAAT-TCTCTTTCAGGATGTGGATGGAGGACTGCTGTATTGCCCAGGTCACTGCTGCTTTCCTTTCTTCCAGGGCCTGGAGGAAGTTCAGAATGGAGAAGGTGCTAACTTAA----GGCATGGTGATGCTCTCAGC--CTCTTCCTTCCCTGTCAGCAGAAGGGCTCAGGGAAAGCCCT-----CAGCCTCCCCAGTCCAGTGAAGCCTCCTGCATGGTCCGTGACAATAGCCCAGATCCCCAGGCTCCGGGAGGTTCCC-CAAGATGTGCTGTCCACTGAGCACTGG-AATACAAGCTACCGAA-TATGAATAAACATAATAAACATCAGC i proCoq1.NW_012136747v1 I 3 C 0 s otoGar3.GL873526 36241038 414 - 42659167 tttttttatacacgtaggaccccagtgcctgacctgtggtgaatacccagtaa------------atAACCAGATGTACTCATAGCTGCCTTTTTCTTGCCATGTTGGGTAAAACTACTTTGTGGAAT-TCTCTTTCAGGATATGGATGGAGGACTGCTGTATTGCCCAGTTCACTGCTGCTTTCCTTTCTTCCAGGGCATGGAGCAAGTACAGAATGGAGAAGGCACTA----AA----CAAATGGTGAGGCTCTCAGC--CT-TTCCTTCCCTGT---CAGAAGGGTCAAGGGAAAGCCCT-----CAGCCTCCCCCATCCAGTGAAGCCTCCTGCATGGTCCGCGACCATAGCCCCTATCCT---------GGAGGTTCCCTTGAAATGTGCTGTCTACTGAGCACTGGAAAAACAAGCAATCAAA-TATGAATAAATGTAGTAAACATCAGC i otoGar3.GL873526 I 5 C 0 s canFam3.chr10 46037320 417 - 69331447 gttttttataactttgggcccccagtgcctggtttctgataaatgttcagtaaatgtgtgaatgagtgaaCAAAT-----------TGCCTTGCTCTTGCCTTGTTTGGTAGAACCTC----TGGAATGTTCTTTTTGGTGTGTGGATAGAGGGCTACTCTG-TGCCCAGTTCACTGCTGCTTTCCTTTCTTACAGGACATGGAGGAAGTACAGAAAGGAGACAGC-CTAACTTAATTATGATATGGTGATGCTCACAGCCTCTCCTATCTCCCTAT---CGGAAGGGCCCAGGGAAAGCCTT-----CAGCCTCCCTACTCCAGTGAAGCCTCCTGCACCACCTGTGACCATAGCCCAGATCCCCAGGCTCTGGGAGGTTCCC-AGAAATGTGCTGTCCACTGAGCA-------------CAGTCAGCTTATGAATAAACATGATAAACATCAGC i canFam3.chr10 I 115 C 0 a score=419911.000000 s hg38.chr22_GL383582v2_alt 5700 36 + 162811 CGTGCGTGACTGAGTGATGGCTGCAGTTTCTCAGTA s panTro5.chr22 28758864 36 + 37823149 CGTGCGTGACTGAGTGATGGCTGCAGTTTCTCAGTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41061022 36 + 50109623 CGTGCGTGACTGAGTGATGGCTGCAGTTTCTCAGTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035917 36 + 4464012 CGTGCGTGACTGAGTGATGGCTGCAGTTTCTCAGTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106565746 36 - 115148730 TGTGTGTGACTGAGTGATGGCTGCAGTTTCTCAGTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84188715 36 + 92844088 TGTGTGTGACTGAGTGATTGCTGCAGTTTCTCAGTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87533561 36 - 96509753 TGTGTGTGACTGAGTGATTGCTGCAGTTTCTCAGTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7022161 36 - 13098629 TGTGTGTGACTGAGTGATTGCTGCAGTTTCTCAGTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993904 36 - 4483953 TGTGTGTGACTGAGTGATTGCTGCAGTTTCTCAGTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24620296 36 + 33263144 TGTGTGTGACTGAGTGATTGCTGTAGTTTCTCAGTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13890841 36 - 14338769 TGTGTGTGACTGAGTGATTGCTGCAGTTTCTCAGTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 837464 36 + 1946073 TGTGTGTGACTGAGTGATTGCTGCAGTTTCTCAGTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1876045 36 - 2117846 TGTGTGTGACTGAGTGATGGCTGCAGTTTCTCAGTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8796569 36 - 16357246 TGTTTGTGATTGAATGATGGCTGCAATTTCTCAGTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1270147 36 - 1807191 TGTTTGTGACTGAATAATGGCTGCAGTTTCTCAGTG i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4987921 36 - 6317780 TACGTATGACTGAATGACAGCTGAAGTTTCTCAGTA i proCoq1.NW_012136747v1 C 0 I 1740 s otoGar3.GL873526 36241452 36 - 42659167 TACGTATGACTGAGTGGCAGCTGGAGTGTCTCAGTA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46037737 36 - 69331447 TCTGTGTGACTGAGTCATGGCTAAAGTGTCTTAGCA i canFam3.chr10 C 0 C 0 e micMur3.chr7 5627083 2292 + 108171978 I a score=1648442.000000 s hg38.chr22_GL383582v2_alt 5736 175 + 162811 TCCCTAGGTTCTAGTTGGTGCAG-----TTGTCTCTGCTGTCCTTTATTTA-TGGGAGAAACATAGG-----------------CCCAGGCTATCCAGGCTGCAG--TGGAGCCTGGTGAACTATTCtgggggccctgggaactattttcattgtttacaaaagcccaacagaaactgtgcattttcccttaagaaagct s panTro5.chr22 28758900 175 + 37823149 TCCCTAGGTTCTAGTTGGTGCAG-----TTGTCTCTGCTGTCCTTTATTTA-TGGGAGAAACATAGG-----------------CCCAGGCTATCCAGGCTGCAG--TGGAGCCTGGTGAACTATTCtgggggccctgggaactattttcattgtttacaaaagcccaacagaaactgtgcattttcccttaagaaagct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41061058 175 + 50109623 TCCCTAGGTTCTAGTTGGTGCAG-----TTGTCTCTGCTGTCCTTTATTTA-TGGGAGAAACATAGG-----------------CCCAGGCTATCCAGGCTGCAG--TGGAGCCTGGTGAACTATTCtgggggccctgggaactattttcattgtttacaaaagcccaacagaaactgtgcattttcccttaagaaagct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3035953 175 + 4464012 TCCCTAGGTTCTAGTTGGTGCAG-----TTGTCTCTGCTGTCCTTTATTTA-TGGGAGAAACATAGG-----------------CCCAGGCTATCCAGGCTGCAG--TGGAGCCTGGTGAACTATTCtgggggccctgggaactattttcattgtttacaaaagcccaacagaaactgtgcattttcccttaagaaagct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106565782 174 - 115148730 TGCCTAGGTTCTAGTTGGTGCAG-----TTGTCTCTGCTGTCCTATATTTA-TGGGAGAAACATAGG-----------------CCCAGGCTATCCAGGCTGCAG--TGGAGCCTGGTGAACTATTCt-ggagccctgggaactatttttattgtttacaaaagcccaacagaaactgtgcattttcccttaagaaagct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84188751 172 + 92844088 TGCCTAGGCTCTAGTTGGTGCGG-----TTGTTTCTGCTGTCCTTTATTCA-TGAGAGAAAC--AGG-----------------CCCAGGCTATCCAGGCTGCAG--TGGAGCCCGGTGAACTATTCtggggg-cctgggaacgattttcattgtttacaaaagcccaacagaaactgcgcattttcccttaagaaagct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87533597 172 - 96509753 TGCCTAGGCTCTAGTTGGTGCGG-----TTGTTTCTGCTGTCCTTTATTCA-TGAGAGAAAC--AGG-----------------CCCAGGCTATCCAGGCTGCAG--TGGAGCCCGGTGAACTATTCtggggg-cctgggaacgattttcattgtttacaaaagcccaacagaaactgcgcattttcccttaagaaagct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7022197 174 - 13098629 TGCCTAGGCTCTAGTTGGTGCGG-----TTGTTTCTGCTGTCCTTTATTCA-TGAGAGAAACATAGG-----------------CCCAGGCTATCCAGGCTGCAG--TGGAGCCCGGTGAACTATTCtggggg-cctgggaacgattttcattgtttacaaaagcccaacagaaactgcgcattttcccttaagaaagct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3993940 173 - 4483953 TGCCTAGGCTCTAGTTGGTGCGG-----TTGTCTCTGCTGTCCTTTATTCA-TGAGAGAAACATAGG-----------------CCCAGGCTATCCAGGCTGCAG--TGGAGCCCGGTGAACTATTCT-GGGG-CCTGGGAACGATTTTCATTGTTTACAAAAGCCCAATAGAAACTGCGCATTTTCCCTTAAGAAAGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24620332 174 + 33263144 TGCCTAGGCTCTAGTTGGTGCGG-----TTGTCTCTGCTGTCCTTTATTCA-TGAGAGAAACATAGG-----------------CCCAGGCTATCCAGGCTGCAG--TGGAGCCCGGTGAACTATTCtggggg-cctgggaacgattttcattgtttacaaaagcccaacagaaactgcgcattttcccttaagaaagct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13890877 174 - 14338769 TGCCTAGGCTCTAGTTGGTGCAG-----TTGTCTCTGCTGTCCTTTATTCA-TGAGAGAAACATAGG-----------------CCCAGGCTATCCAGGCTGCAG--TGGAGCCCGGTGAACTATTCtggggg-cctgggaacgattttcattgtttacaaaagcccaacagaaactgcgcattttcccttaagaaagct i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 837500 174 + 1946073 TGCCTAGGCTCTAGTTGGTGCGG-----TTGTCTCTGCTGTCCTTTATTTA-TGAGAGAAACATAGG-----------------CCCAGGCTATCCAGGCTGCAG--TGGAGCCTGGTGAACTATTCTGGGGG-CCTGGGAACGATTTTCATTGTTTACAAAAGCCCAACAGAAACTGCAAATTTTCCCTTAAGAAAGCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1876081 174 - 2117846 TGTGTAGGCTCTAGTTGGTGTGG-----TTCTCTCTGCTGTTGTTTATTTA-TGAGAGAAACATAGG-----------------CCTAGGTTATCCAGGTTTCAG--TGGAGCCTGGTGAACTATTCtggagg-cctgggaactattttcattgtctacaaaagcccagcagaaactgtccgttttcccttaagaaagct i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8796605 170 - 16357246 TGTGTAGGCTCTGGTTGGTGCGG-----TTCTCTCTGCTGTCG----TTTA-TGAGAGAAACATAGG-----------------CCTAGAGTATCCAGGTTTCAC--TGGAGCCTGGTGAACTATTCtggagg-cctgggaactattttcattgtttacaaaagcccagcagaaactgtccgttttcccttaagaaagct i saiBol1.JH378157 C 0 I 317 s cebCap1.NW_016107750v1 1270183 173 - 1807191 TGTGTAGGCTCTAGTTGGTGCGG-----TTCTCTCTGCTGTCGTTTATTTA-TGAGAGAAACATAGG-----------------CCTAGATTATCCAGGTTTCAG--TGGAGCCTGGTGAACTATTCtggagg-cctgggaactattttcattgtttacaaaagcccagcagaaactgtccgttttcccttaagaaagc- i cebCap1.NW_016107750v1 C 0 I 1 s otoGar3.GL873526 36241488 186 - 42659167 TGAGCAGGCTCTAGTTGCTGTAGTTTTTTTGTCTCTGTTGTCCTTTTTTTA-TCAGAGAAACATAAGACACCTTTGAT-----acccaggatatcccagccctta--tggatccacaaaggttattatgggga-cctgggacctattttcattattta-gaaagcccaacagaaact----cttttcccgtaacaaacct i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46037773 184 - 69331447 TGAGTAAACCCTAGT---TGCAA-TTTCTTGTCCCTGCAATCCTTTATCAGCTGAACGTAAC--AGG---CCTTtgatttacaacccaagatttccagcccccagcttccatccataaaggtaattacaggca-cctaggacctattttcatcatttacaaaagcccaacagaaact------ttcccctcagtaaagat i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5627083 2292 + 108171978 I a score=432.000000 s hg38.chr22_GL383582v2_alt 5911 2 + 162811 tc s panTro5.chr22 28759075 2 + 37823149 ac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41061233 2 + 50109623 ac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3036128 2 + 4464012 ac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106565956 2 - 115148730 ac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84188923 2 + 92844088 ac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87533769 2 - 96509753 ac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7022371 2 - 13098629 ac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3994113 2 - 4483953 AC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24620506 2 + 33263144 ac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13891051 2 - 14338769 ac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 837674 2 + 1946073 GC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1876255 1 - 2117846 a- i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1270357 1 - 1807191 a- i cebCap1.NW_016107750v1 I 1 C 0 s otoGar3.GL873526 36241674 2 - 42659167 gc i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46037957 2 - 69331447 gc i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5627083 2292 + 108171978 I e saiBol1.JH378157 8796775 317 - 16357246 I a score=1063206.000000 s hg38.chr22_GL383582v2_alt 5913 126 + 162811 atgggctaactaaagcctcaTGCCA-TTCTGTGTTCAGT-------GCCAGTCATGACA-------------GCTCTGCTTGTTAGCAT---ACTACTTAAA---TATAACTAGAATGA------------TTCAAAACTCGGGTTCtgtgat-atgaggatatag s panTro5.chr22 28759077 127 + 37823149 atgggctaactaaagcctcatgccatttctgtgttCAGT-------GCCAGTCATGACA-------------GCTCTGCTTGTTAGCAT---ACTACTTAAA---TATAACTAGAATGA------------TTCAAAACTTGGGTTCtgtgat-atgaggatatag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41061235 127 + 50109623 atgggctaactaaagcctcatgccatttctgtgttCAGT-------GCCAGTCATGACA-------------GCTCTGCTTGTTAGCAT---ACTACTTAAA---TATAACTAGAATGA------------TTCAAAACTTGGGTTCtgtgat-atgaggatatag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3036130 126 + 4464012 atgggctaactaaagcctcaTGCCA-TTCTGTGTTCAGT-------GCCAGTCATGACA-------------GCTCTGCTTGTTAGCGT---ACTACTTAAA---TATAACTAGAATGA------------TTCAAAACTTGGGTTCtgtgat-atgaggatatag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106565958 126 - 115148730 atgggctaactaaagcctcaTGCCA-TTCTGTGTTCAGT-------GCCAGTCATGACA-------------GCTCTGCTTGTTAGCGT---ATTACTTAAA---TATAACTAGAATGA------------TTCAAAACTTGGGTTCtgtgat-atgaggatatat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84188925 133 + 92844088 atggcctaactaaagcctcaTGCCA-TTCTGTGTTCAGT-------GCCAGTCATTTAAGTAG------TACGCTCTGCTTGTTAGCAT---ACTACTTAAA---TATAACTAGAATGA------------TTCAAAACTTGGGTTCtgtgat-atgaggatatat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87533771 133 - 96509753 atggcctaactaaagcctcaTGCCA-TTCTGTGTTCAGT-------GCCAGTCATTTAAGTAG------TACGCTCTGCTTGTTAGCAT---ACTACTTAAA---TATAACTAGAATGA------------TTCAAAACTTGGGTTCtgtgat-atgaggatatat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7022373 133 - 13098629 acggcctaactaaagcctcaTGCCA-TTCTGTGTTCAGT-------GCCAGTCATTTAAGTAG------TACGCTCTGCTTGTTAGCAT---ACTACTTAAA---TATAACTAGAATGA------------TTCAAAACTTGGGTTCtgtgat-atgaggatatat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3994115 133 - 4483953 ACGGCCTAACTAAAGCCTCATGCCA-TTCTGTGTTCAGT-------GCCAGTCATTTAAGTAG------TATGCTCTGCTTGTTAGCAT---ACTACTTAAA---TATAACTAGAATGA------------TTCAAAACTTGGGTTCtgtgat-atgaggatatat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24620508 133 + 33263144 acggcctaactaaagcctcaTGCCA-TTCTGTGTTCAGT-------GCCAGTCATTTAAGTAG------TACGCTCTGCTTGTTAGCAT---ACTACTTAAA---TATAACTAGAATGA------------TTCAAAACTTGGGTTCtgtgat-atgaggatatat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13891053 133 - 14338769 acggcctaactaaagcctcaTGCCA-TTCTGTGTTCAGT-------GCCAGTCATTTTAGTAG------TACGCTCTGCTTGTTAGCAT---ACTACTTAAA---TATAACTAGAATGA------------TTCAAAACTTGGGTTCtgtgat-atgaggatatat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 837676 130 + 1946073 ACGGCCTAACTAAAGCCTCATGCCA-TTCTGTGTTCAGT-------GCCAGTCATTTAAGTAG------TACGCTCTGCTTGTTAGCGT---ACTA---AAA---TATAACTAGAATGA------------TTCAAAACTTGGGTTCtgtgat-atgaggatatat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1876256 128 - 2117846 atgggct-actaaagcctcaagcca-ttctgtgttCAGT-------GCCAGTCATGAGA-------------GCTTTGCTTGTTTTCATACAACTACTTAAA---TATGACTAGAATGA------------TCCAAAACTTGGGTTCtgtgat-actaggatatat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8797092 127 - 16357246 ATGGGCT-ACTAAAGCCTCAAGCCA-TTCTGTGTTCAGT-------GCCAGTCATGAGA-------------GCTTTGCTTG-TTACATACAACTACTTAAA---TATGACTAGAATGA------------TTGAAAACTTTGGTTCtgtgat-attaggatatac i saiBol1.JH378157 I 317 C 0 s cebCap1.NW_016107750v1 1270358 128 - 1807191 atgggct-actaaagcctcaagcca-ttctgtgttCACC-------GCCAGTCATGAGA-------------GCTTTGCTTGTTATCATACAACTACTTAAA---TATGACTAGAATGA------------TTCAAAACTTGGGTTCtgtgat-attaggatatat i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36241676 143 - 42659167 atagact-gctaaagccttga---a-ctttgtgtttagc-------AATCTTGGCTCAATTAGTGATCATGAGCTTTGATTTTTCACTTACAACTACTTAAC---TATCATTAGAATGA--------TTCTTTCAAAACTTGGGTTTGTTGATAAttataacatgt i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46037959 157 - 69331447 acagactaacaaaaggctcaagct--ttgagtgtcgagtaatactggcaggttatcaca-tgccattcttaagctttgattgTTTAAA----ACTCCAGGAACATTGTTATTAGAATGAATCTTTCAATCTTTCAACACTTGGGTTCTTT-AG-ATGAAAAGACAG i canFam3.chr10 C 0 I 20 e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5627083 2292 + 108171978 I a score=4971076.000000 s hg38.chr22_GL383582v2_alt 6039 569 + 162811 ata----ggttttcatctat--ttcctggcttataa----ctcccaaaacccttgtt-ttaggcttttgttataatgttgggcacttcgg-----gcctcagaaaacagcag-gctgtttctcagatcttctcctgacctcctttcacctgctgctttttctccccaaggcaggccatagaaactaaaagta-----taatc----------------ttcctttgc----ccgtct-tccagttggccataaaaagaatcctctgacctaccttgtctgattttaggtca-tgaga-cccccatttcagaagggattctgcc-ccatacctgag--------------------------aggaagaaatgtagacaggccttgttggacttccccactcca-tctgt----attagattatgcctcttttgt----ccaatcccatttctccagtgttgtccatgcttcaatcatccctatccaatgaggtctccataaaaggcccaagaagacaggtttagagagctttcggagaacagaacacttggct-ttgcaaagtggcacgcctg--gagagaacttggaagctccacgcccc---ttctatacctcaccctatg----------catctcttcagctgtatcttttgtgatatcctt s panTro5.chr22 28759204 569 + 37823149 ata----ggttttcatctat--ttcctggcttataa----ctcccaaaacccttgtt-ttaggcttttgttataatgttgggcacttcgg-----gcctcagaaaacagcag-tctgtttctcagatcttctcctgacctcctttcacctgctgctttttctccccaaggcaggccatagaaactaaaagta-----taatc----------------ttcctttgc----ccgtct-tccagttggccataaaaagaatcctctgacctaccttgtctgattttaggtca-tgaga-cccccatttcagaagggattctgcc-ccatacctgag--------------------------aggaagaaatatggacaggccttgttggacttccccactcca-tctgt----attagattatgcctcttttgt----ccaatcccatttctcaactgttgtccatgcttcaatcatccctatccaatgaggtctccataaaaggcccaagaagacaggtttagagagctttcggagaacagaacacttggct-ttgcaaagtggcacgcctg--gagagaacttggaagctccacgcccc---ttctatacctcaccctatg----------catctcttcagctgtatcttttgtgatatcctt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41061362 569 + 50109623 ata----ggttttcatctat--ttcctggcttataa----ctcccaaaacccttgtt-ttaggcttttgttataatgttgggcacttcgg-----gcctcagaaaacagcag-tctgtttctcagatcttctcctgacctcctttcacctgctgctttttctccccaaggcaggccatagaaactaaaagta-----taatc----------------ttcctttgc----ccgtct-tccagttggccataaaaagaatcctctgacctaccttgtctgattttaggtca-tgaga-cccccatttcagaagggattctgcc-ccatacctgag--------------------------aggaagaaatatggacaggccttgttggacttccccactcca-tctgt----attagattatgcctcttttgt----ccaatcccatttctcaactgttgtccatgcttcaatcatccctatccaatgaggtctccataaaaggcccaagaagacaggtttagagagctttcggagaacagaacacttggct-ttgcaaagtggcacgcctg--gagagaacttggaagctccacgcccc---ttctatacctcaccctatg----------catctcttcagctgtatcttttgtgatatcctt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3036256 581 + 4464012 ata----ggttttcatctat--ttcctggcttataa----ctcccaaaacccttgtt-ttaggc-tttgttataatgttgggcacttcgg-----gcctcagaaaacagcag-tctctttctcagatcttctcctgacctcctttcacctgctgctttttctccccaaggcaggccatagaaactaaaagta-----taatc----------------ttcctttgc----ccgtct-tcgagttggccataaaaagaatcctctgacctaccttgtctgattttaggtca-tgaga-cccctatttcagaagggattctgcc-ccatacgtggg--------------------------aggaagaaatgtggacaggccttgttggacttccccactcca-tctgt----attagattatgcctcttttgt----ccaatcccatttctccaccgttgtccatgcttcaatcatctctatccaatgaggtctccataaaaggcccaagaagacaggtttagagagctttcggagaacagaacacttggct-ttgcaaagtggcacgcctg--gagagaacttggaagctccacgccccttattctatacctcaccctatgctgtatacctcacctcttcagctgtatcttttgtgatatcctt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106566084 567 - 115148730 ata----ggttttcatctat--ttcctggcttataa----ctcccaaaacccttgtt-ttaggcttttgttataatgttgggcacttcgg-----gcctcagaaaacagcag-tctctttctcagatcttctcctgacctcctt----ctgctgctttttctccccaaggtaggccatagaaactaaaagta-----taatc----------------ttcctttgc----ccgtct-tcgagttggccataaaaagaatcctctgacctaccttgtctgattttaggtca-tgaga-cccccatttcagaagggattctgcc-ccatacctggg--------------------------aggaagaaacgtggacaggccttgttggactt-cccactcca-tctgt----attagattatgtctcttttgt----ccaatcccatttctccaccgttgtccatgcttcaatcatccctatccaatgaggtctccataaaaggcccaagaagacaggtttagagagcttttggagaacagaacacttggct-ttggaaagtggcacgcctg--gagagaacttggaagctccatgccccttcttctatacctcaccctatg----------catctcttcagctgtatcttttgtgatatcctt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84189058 570 + 92844088 ata----ggttttcatctat--ttcctggcttataa----ctcccaaagcccttgtt-ttaggcttttgttacaatgttgggcactttgg-----gcctcagaaaacaacag-tctctttctcagaccttctcctgacctcctttcacctgctgctttttctccccaaggcaggccatagaaactaaaagta-----taatc----------------ttcctttgc----ctgtct-tcgagttggccataaaaagaattctctgacctaccttgtctgattttaggtca-tgaga-cccccatttcagaagggattctttc-ccttacctggg--------------------------aggaagaaatgtggacaggccttgttggacttccccactcca-tctgt----attagattatgcctcttttgt----ctactcccatttttccaccgttgtccatgcttcaatcatccctatccaatgaggtctccataaaaggcccaagaagacacgttc--agagttttcggagaacaaaacacttggct-ttggaaagtggcatgcctg--gagagaacttggaagctccatgtcccttcttctatacctcaccctatg----------catctcttcatctgtatcttttgtgatatcctt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87533904 570 - 96509753 ata----ggttttcatctat--ttcctggcttataa----ctcccaaagcccttgtt-ttaggcttttgttacaatgttgggcactttgg-----gcctcagaaaacaacag-tctctttctcagaccttctcctgacctcctttcacctgctgctttttctccccaaggcaggccatagaaactaaaagta-----taatc----------------ttcctttgc----ctgtct-tcgagttggccataaaaagaattctctgacctaccttgtctgattttaggtca-tgaga-cccccatttcagaagggattctttc-ccttacctggg--------------------------aggaagaaatgtggacaggccttgttggacttccccactcca-tctgt----attagattatgcctcttttgt----ctactcccatttttccaccgttgtccatgcttcaatcatccctatccaatgaggtctccataaaaggcccaagaagacacgttc--agagttttcggagaacaaaacacttggct-ttggaaagtggcatgcctg--gagagaacttggaagctccatgtcccttcttctatacctcaccctatg----------catctcttcatctgtatcttttgtgatatcctt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7022506 572 - 13098629 ata----ggttttcatctat--ttcctggcttataa----ctcccaaagcccttgtt-ttaggcttttgttacaatgttgggcacttcgg-----gcctcagaaaacaacag-tctctttctcagaccttctcctgacctcctttcacctgctgctttttctccccaaggcaggccatagaaactaaaagta-----taatc----------------ttcctttgc----ctgtct-ttgagttggccataaaaagaattctctgacctaccttgtctgattttaggtca-tgaga-cccccatttcagaagggattctttc-ccttacctggg--------------------------aggaagaaatgtggacaggccttgttggacttacccactcca-tctgt----attagattatgcctcttttgt----ctactcccatttttccaccgttgtccatgcttcaatcatccctatccaatgaggtctccataaaaggcccaagaagacacgttcagagagttttcggagaacagaacacttggct-ttggaaagtggcatgcctg--gagagaacttggaagctccatgccccttcttctatacctcaccctatg----------catctcttcatctgtatcttttgtgatatcctt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3994248 569 - 4483953 aga----ggttttcatctat--ttcctggcttataa----cccccaaagcccttgtt-ttaggcttttgttacaatgttgggcacttcgg-----gcctcagaa---aacag-tctctttctcagaccttctcctgacctcctttcacctgctgctttttctccccaaggcaggccatagaaactaaaagta-----taatc----------------ttcttttgc----ctgtct-tcgagttggccataaaaagaattctctgacctaccttgtctgattttaggtca-tgaga-cccccaattcagaagggattctttc-ccttacctggg--------------------------aggaagaaatgtggacaggccttgttggacttccccactcca-tctgt----attagattatgcctcttttgt----ctactcccatttttccaccgttggccatgcttcaatcatccctatccaatgaggtctccacaaaaggcccaagaagacacgttcagagagctttcggagaacagaacacttggct-ttggaaagtggcatgcctg--gagagaacttggaagctccgtgccccttcttctatacctcaccctatg----------catctcttcatctgtatcttttgtgatatcctt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24620641 572 + 33263144 ata----ggttttcatctat--ttcctggcttataa----ctcgcaaagcccttgtt-ttaggcttttgttacaatgttgggcacttcgg-----gcctcagaaaacaacag-tctctttctcagaccttctcctgacctcctttcacctgctgctttttctccccaaggcaggccatagaaactaaaagta-----taatc----------------ttcctttgc----ctgtct-tcgagttggccgtaaaaagaattctctgacctaccttgtctaattttaggtca-tgaga-cccccatttcagaagggattctttc-ccttacctggg--------------------------aggaagaaatgtggacgggccttgttggacttccccactcca-tctgt----attagattatgcctcttttgt----ctactcccatttttccaccgttgtccatgcttcaatcatccctatccaatgaggtctccataaaaggcccaagaagacacgttcagagagctttcggagaacagaacacttggct-ttggaaagtggcatgcctg--gagagaacctggaagctccatgccccttcttctatacctcaccctatg----------catctcttcatctgtatcttttgtgatatcctt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13891186 572 - 14338769 aga----ggttttcatctat--ttcctggcttataa----ctcccaaagcccttgtt-ttaggcttttgttacaatgttgggcacttcgg-----gcctcagaaaacaacag-tctctttctcagaccttctcctgacctcctttcacctgctgctttttctccccaaggcaggccatagaaactaaaagta-----taatc----------------ttcctttgc----ctgtct-tcgagttggccataaaaagaattctctgacctaccttgtctgattttaggtta-tgaga-cccccatttcagaagggattctttc-ccttacctggg--------------------------aggaagaaatgtggacaggccttgttggacttccccactcca-tctgt----attagattatgcctcttttgt----ctactcccatttttccaccgttgtccatgcttcaatcatccctatccaatgaggtctccataaaaggcccaagaagacacgttcagagagctttcggagaacagaacacttggct-ttggaaagtggcatgcctg--gagagaacttggaagctccatgccccttcttctatacctcaccctatg----------catctcttcatctgtatcttttgtgatgtcctt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 837806 562 + 1946073 ata----ggttttcatctat--ttcctggcttataa----ctcccaaagcccttgtt-ttaggtttttcttacaatgttgggcacttcgg-----gcctcagaaaacaacag-tctct-------accttctcctgacctcctttcacctgctgcttttactccccaaggcaggccatagaaactaaaagta-----taatc----------------ttcctttgc----ctgtct-tcgagttggccataaaaagaattctctgacctaccttgtctgattttatgtca-tgaga-cccccatttcagaagggattttgcc-ccttacctggg--------------------------aggaagaaatgtggacaggccttgttggacttccccactcca-tctgt----attagattatgcctcttttgt----ctactcccatttttccaccgttgtccatgcttcaatcatccctatccaatgaggtctccataaaaggcccaagaagacagcttcagagagctttcggagaacagaacagttggct-ttggaaagtggcatgcctc--gagagaacttggaagctccatgccc---cttctatacctcaccctatg----------catctcttcatctgtatcttttgtgatattctt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1876384 583 - 2117846 gta----ggttttcatctgt--ttcctggctcataaccatctcccaaagcctttgttaataggctttggttacaacgttgggcacttcag-----gcctcagaaaacagcagttctctttcttggacctt---ctgac---ctttcacctgctgctttttctctccaaggctggcc-tagaaactaaaagta-----taactttgagtttatataaa-ttcctttgcctttctgtct-tcgagttggccataaaaagaattctccgacctaccctgtct-agtttaggtca-tgagatctcccatttcagaagggattctgcc-ccatacctggg--------------------------aggaagaaatgtggacaggcctggttggacttccctgc-----tccat----gttagatcatgcctcttttg-----ccaatcccacctctccaccgttgtccacacttcagttatgcctatccaatgaggtctccataaaaggcccaaaaggacaggttgagagagcttccggagagcagaacacttgctt-tatcaaagtggcatgccgg--gagaggacatggacgctccatgccccttcctccgtacttcaccctatg----------ca--tctttgtctgtatcttttgtgatatcctt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8797219 566 - 16357246 gta----ggttttcatctgt--ttcctggcttataaccatcccccaaagcccttgtt-acaggcttttcttacaacgttgggcacttcag-----gcctcagaaaacagcagttctctttcttggacctt---ctaacct-ctttcac---ctgctttttctccccaaggcaggcc-tagaaaccaaaagtg-----taacttttagtttatataaacttcctttgcctttctgtct-tcgagttggctataaaaagaattctccgacctaccctgtctgagtttaggtca-tgagaccccccatttcagaagggattctgcc-ccatacctggg--------------------------aggaagaaatgtagacaggccttgctggacttccctgc-----tctgt----attagaccatgcctcttttg-----ccaatccgacttctccaccgttgtccatgcttca-------------------atctccataaaagtcccaaaaggacaggttcagagagcttccagagagcagaacacttagtt-tatcaaagtggcatgcctg--gagaggacatggaagctccatgccccttccttcacacttcaccctatg----------catctcttcgtctgtatcttttgtgatatcctt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1270486 570 - 1807191 gta----ggttttcatctgt--ttcctggcttataaccatcccccaaagcccttgtt-ataggcttttgttacaacgttgggcacttcag-----gcctcagaaaacagcagttctctttcttggacctt---ctgacctcctttcacctgctgctttttcttcccaaggctggcc-tagaaactaaaagtt-----taacttt-agtttatataaacttcctttgcctttctgtct-tcaagttggtcataaaaagaattctccgacctaccctgtct-------------------cccccatttcagaagtgactctgcc-ccatacctggg--------------------------aggaagaaatgtggacaggccttgttggacttccccac-----tctgt----attagatcatgcctcttttg-----ccaatccgacttcttcaccgttgtccatgcttcagtcatgcctatccaataaggtctccataaaaggcccgaaaggacaggttcagagagcttctggagagcagaacacttggtg-tatcaaagaggcatagctg--gagaggacatggaagctccatgccccttcctccatacttcaccctatg----------catctcttcgtctatatcttttgtgatatcctt i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36241819 582 - 42659167 atacgttggttttcatccacagttcctggctcatat----ctcccctagcccttgtc-actgtcttttgttacaatgttggggcactcagaagcagcttcaggaaacagcagatcactt------------------cttcctttcacctgctccttttcctccgcagggtaggccatagcagttgaaaacagactctaatc----------------ttcccttgc----ctttgtctggagctgtccctaaaga-aattctctgacctaccttgtctgatggtaggtcattaaga-tccccatttc--------ttcttccaccatggctgggaagaattgacaccacacagaaagcccaagaaaaaatctgaatagaaa-----ggcttttcctactcaagtctattaccattaaatcattccctttttgtatgaacatgtctatgtctacatggttgtccgtgctttaatcatgcctatccaatgtaacatcaataaaagacccaag------------gagagcctccagatagctgaacatgaagttgctggagagtggtgcaccagccaggagggcatggaaact----gccccttaccctataccttgccctata----------catctcttcatctatatcctttgtgatatcctt i otoGar3.GL873526 C 0 I 243 e canFam3.chr10 46038116 20 - 69331447 I e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5627083 2292 + 108171978 I a score=506317.000000 s hg38.chr22_GL383582v2_alt 6608 63 + 162811 tataataaaccagtaaacggacctaagtgttcctctgagttctgcaagctgctccagcaaatt s panTro5.chr22 28759773 63 + 37823149 tataataaaccagtaaacggacctaagcgttcccctgagttctgcaagctgctccagcaaatt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41061931 63 + 50109623 tataataaaccagtaaacggacctaagtgttcccctgagttctgcaagctgctccagcaaatt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3036837 63 + 4464012 tataataaactagtaaacggacctaagtgttcccctgagttctgcaagctgctccagcaaatt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106566651 63 - 115148730 tataataaaccagtacacggacctaagtgttcccctgagttctgcaagctgctccagcaaatt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84189628 61 + 92844088 tacaataaaccagtaaatggacctaagtgttccc--gagttctgtaagctgctccagcaaatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87534474 61 - 96509753 tacaataaaccagtaaatggacctaagtgttccc--gagttctgtaagctgctccagcaaatt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023078 61 - 13098629 tacaataaaccagtaaatggacctaagtgttccc--gagttctgcaagctgctccagcaaatt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3994817 61 - 4483953 tacaataaaccagtaaatggacctaagtgttccc--gagttctgcaagctgctccagcaaatt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24621213 61 + 33263144 tacaataaaccagtaaatggacctaagtgttccc--gagttctgcaagctgctccagcaaatt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13891758 61 - 14338769 tacaataaaccagtaaatggacctaagtgttccc--gagttctgcaagctgctccagcaaatt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 838368 61 + 1946073 tataataaaccagtaaatggacctaagtgttccc--aagttctgcaagctgctccagcaaatt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1876967 63 - 2117846 tataataaaccactaaagctacctaagtgtttccctgagttctgcaagttgctctagcaaatt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8797785 61 - 16357246 tataatgaaccagtaaacctaccgaagtatt--cctgagttctgcgagctgctccagcaaatt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1271056 63 - 1807191 tataatgaaccagtaaacttacctaagtattttcctgagttctgcgagctgctctagcaaatt i cebCap1.NW_016107750v1 C 0 C 0 e canFam3.chr10 46038116 20 - 69331447 I e otoGar3.GL873526 36242401 243 - 42659167 I e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5627083 2292 + 108171978 I a score=15540.000000 s hg38.chr22_GL383582v2_alt 6671 6 + 162811 aaaaag s panTro5.chr22 28759836 6 + 37823149 aaaaag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41061994 6 + 50109623 aaaaag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3036900 6 + 4464012 aaaaag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106566714 6 - 115148730 aaaaag i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1877030 6 - 2117846 aaaaag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8797846 6 - 16357246 aaaaag i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1271119 6 - 1807191 aaaaag i cebCap1.NW_016107750v1 C 0 I 1203 e canFam3.chr10 46038116 20 - 69331447 I e otoGar3.GL873526 36242401 243 - 42659167 I e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5627083 2292 + 108171978 I e colAng1.NW_012115588v1 838429 0 + 1946073 C e manLeu1.NW_012102031v1 13891819 0 - 14338769 C e chlSab2.chr19 24621274 0 + 33263144 C e cerAty1.NW_011999588v1 3994878 0 - 4483953 C e macNem1.NW_012012688v1 7023139 0 - 13098629 C e macFas5.chr10 87534535 0 - 96509753 C e rheMac8.chr10 84189689 0 + 92844088 C a score=4140.000000 s hg38.chr22_GL383582v2_alt 6677 4 + 162811 aagg s panTro5.chr22 28759842 4 + 37823149 aagg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41062000 4 + 50109623 aagg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3036906 4 + 4464012 aagg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106566720 4 - 115148730 aagg i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1877036 4 - 2117846 ggag i calJac3.chrUn_GL286373 C 0 I 24 s saiBol1.JH378157 8797852 4 - 16357246 gtgg i saiBol1.JH378157 C 0 I 768 e canFam3.chr10 46038116 20 - 69331447 I e otoGar3.GL873526 36242401 243 - 42659167 I e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5627083 2292 + 108171978 I e cebCap1.NW_016107750v1 1271125 1203 - 1807191 I e colAng1.NW_012115588v1 838429 0 + 1946073 C e manLeu1.NW_012102031v1 13891819 0 - 14338769 C e chlSab2.chr19 24621274 0 + 33263144 C e cerAty1.NW_011999588v1 3994878 0 - 4483953 C e macNem1.NW_012012688v1 7023139 0 - 13098629 C e macFas5.chr10 87534535 0 - 96509753 C e rheMac8.chr10 84189689 0 + 92844088 C a score=338324.000000 s hg38.chr22_GL383582v2_alt 6681 303 + 162811 ggt---------------------------------------------------cagccaggtgcggtggctcacacctgtaaccccagcactttgggaggccaaggcgggcagatcacaaggtcaggagagcgagaccatcctggctaacacagtgaaactctgtctctattaaaaaatagaagaaattagccgggtgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaagaatggcgtgaacccgcgaggc-agagcttgcagtgagccgagatggcaccactgcactccagcctgggcgac-agagtgagactccatctc-------aaaaaaaaaaaaaa s panTro5.chr22 28759846 299 + 37823149 ggt---------------------------------------------------cagccaggtgcggtggctcacacctgtaaccccagcactttgggaggccaaggcgggcagatcacaaggtcaggagagcgagaccatcctggctaacacggtgaaaccctgtctctattaaaaaatagaagaaattagctgggtgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcagg---agaatggtgtgaacccgggaggc-agagcttgcagtgagtcgagatggcaccactgcactccagcctgggcgac-agagagagactccatctc--------aaaaaaaaagaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41062004 307 + 50109623 ggt---------------------------------------------------cagccaggtgcggtggctcacacctgtaaccccagcactttgggaggccaaggcgggcagatcacaaggtcaggagagcgagaccatcctggctaacacggtgaaaccctgtctctattaaaaaatagaagaaattagctgggtgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcagg---agaatggtgtgaacccgggaggc-agagcttgcagtgagtcgagatggcaccactgcactccagcctgggcgac-agagtgagactccatctcaaaaaaaaagaaaaaaaaaga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3036910 299 + 4464012 ggt---------------------------------------------------cagccgggtgcggtggctcacacctgtaatcccagcactttgggaggccaaggcgggcagatcacgaggtcaggagagcgagaccatcccggctaatacagtgaaaccctgtctctactaaaaaatacaaaaaattagccgggcgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcagg---agaatggtgtgaacccgggaggc-agagcttgcagtgagccgagatgg-accactgcactccagcctgggcgac-agagcgagactccatctc-------aaaaaaaagaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106566724 297 - 115148730 ggt---------------------------------------------------tggccaggtacggtggctcacacctgtaatcccagcactttgggaggccaaagcgggcggatcacaaggtcaggagatggagaccatcctggctaacacggtgaaaccctgtctctact-aaaaatacaaaaaattagccgggcgtggtggtgggcgcctgtcgtcccagctactcgggaggctgaggcagg---agaatggtgtgaacccgggaggc-agagcttgcagtgagcggagatggcgccactgcactccagcctgggcgac-agagcgagact-cgtctc--------aaaaaaaaaaaaa i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1877064 351 - 2117846 ggttggaagttctgaaggcttggacttgagaatgttgtctaaagaaagtggaagcagcca-gcgtggtggctcaggcctgtaatcccaacactttgggaggccgaggtgcgtggatcacgagatcaggagatcgagaccatcttggtcaacatggcaaaaccccgtctctact-aaaaatacaaaaaattagctgggcatggtggcgcgtgcctgtaatcccagctactcaggaggctgaggcagg---agaattgcctgaacccaggaggtgggaggttgcggtgagctgagatcacgccattgcactccagcctgggtaacaagagcgaaactctgtctc-------aaaaaaaaaaaaaa i calJac3.chrUn_GL286373 I 24 C 0 e canFam3.chr10 46038116 20 - 69331447 I e otoGar3.GL873526 36242401 243 - 42659167 I e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5627083 2292 + 108171978 I e cebCap1.NW_016107750v1 1271125 1203 - 1807191 I e saiBol1.JH378157 8797856 768 - 16357246 I e colAng1.NW_012115588v1 838429 0 + 1946073 C e manLeu1.NW_012102031v1 13891819 0 - 14338769 C e chlSab2.chr19 24621274 0 + 33263144 C e cerAty1.NW_011999588v1 3994878 0 - 4483953 C e macNem1.NW_012012688v1 7023139 0 - 13098629 C e macFas5.chr10 87534535 0 - 96509753 C e rheMac8.chr10 84189689 0 + 92844088 C a score=1450861.000000 s hg38.chr22_GL383582v2_alt 6984 221 + 162811 aaaaagaaggggtcat----ggg------aacttgaagc-------tcagaagttctggaggcttggacttgtgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacctgtggaatctgttgctatctccaggtagatagtgttcgaagagaattggaggacaggcagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat s panTro5.chr22 28760145 221 + 37823149 aaaaagaaggggtcat----ggg------aacttgaagc-------tcagaagttctggaggcttggacttgtgaatgttgtctaatgggggtgagagcagtcttgtgagactgagccccaaacctgtggaatctgttgctatctccaggtagatagtgttcgaagagaattggagggcaggcagctggtgtctgctgcagaactgactgcttgcttagtgtgggaagaaaccctcat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41062311 225 + 50109623 aaaaagaaaggggtacaataggg------aacttgaagc-------tcagaagttctggaggcttggacttgcgaatgttgtctaatgggggtgggagcagtcttgtgagactgagccccaaacctgtggaatctgttgctatctccaggtagatagtgttcgaagagaattggaggacaggcagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3037209 218 + 4464012 aaaaagaaggggtcat----ggg------aacctgaagc-------tcagaagctctggaggcttggacttgcgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacctgtggaatctgttgctatctccaggtagatagtgttcgaagagaattggaggacagccagctggtgtctgct---gaactgactgcttgctcagtgtggggagaaaccctcat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567021 221 - 115148730 aaaaagaaggggtcat----ggg------aacttgaagc-------tcagaagttctggaggcttggacttgcgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacctgtggaatctgatgctatctccacgtagatagtgttcaaagagaaatggaggacagccagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84189689 227 + 92844088 aaaaagaaggggtcat----gggaactccaacttgaagc-------tcacaagtgctggaggcttggacttgtgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacctgtggaatctgatgctatctccaggtagatagtgttggaagagaattggaggacagccagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87534535 227 - 96509753 aaaaagaaggggtcat----gggaactccaacttgaagc-------tcacaagtgctggaggcttggacttgtgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacctgtggaatctgatgctatctccaggtagatagtgttggaagagaattggaggacagccagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023139 227 - 13098629 aaaaagaaggggtcat----gggaactccaacttgaagc-------tcacaagtgctggaggcttggacttgtgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacctgtggaatctgatgctatctccaggtagatagtgttggaagagaattggaggacagccagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3994878 227 - 4483953 aaaaagaaggggtcat----gggaactccaacttgaagc-------tcagaagtgctggaggcttggacttgtgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacctgtggaatctgatgctatctccaggtagatagtgttggaagagaattggaggacagccagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24621274 227 + 33263144 aaaaagaaggggtcat----gggaactccaacttgaagc-------tcagaagtgctggaggcttggacttgtgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacccgtggaatctgatgctatctccaggtagatagtgttggaagagaattggaggacagccagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13891819 227 - 14338769 aaaaagaaggggtcat----gggaactccaacttgaagc-------tcagaagtgctggaggcttggacttgtgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacctgtggaatctgatgctatctccaggtagatagtgttggaagagaattggaggacagccagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 838429 227 + 1946073 aaaaagaaggggtcat----gggaaccccaacttgaagc-------tcagaagtgctggaggcttggacttgtgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacctgtggaatctggtgctatcgccaggtagatagtgttggaagagaattggaggacagccaggtggtgtctgctgcagaactgaccacttgcttagtgtggggaaaaaccctcat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1877415 141 - 2117846 ---------------------------------------------------------------------------------------------gaaagtggtcttgtggggctaagcccccaacctgtgggatctgatgctatctccaggtagatagtgttggaagtgaactggagaacagccagctggtgtctgct----agacaactacttgcttagtgtggggagaaaccctcat i calJac3.chrUn_GL286373 C 0 I 281 s otoGar3.GL873526 36242644 201 - 42659167 aaaggggggcggtcac----aggaaccccaagttgaagccagctgatcagaagttatggaggctccagcttgccatgagtgtctcaaagtg--ggggatagtcatg-------------------------atgtgacac--tctccaagtagacactgtcagaattcatttgaaagatagccagctggtgtctgctgcaga----attgcttgcctcatgtggcgagagacccccca i otoGar3.GL873526 I 243 C 0 e canFam3.chr10 46038116 20 - 69331447 I e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5627083 2292 + 108171978 I e cebCap1.NW_016107750v1 1271125 1203 - 1807191 I e saiBol1.JH378157 8797856 768 - 16357246 I a score=13788.000000 s hg38.chr22_GL383582v2_alt 7205 3 + 162811 aac s panTro5.chr22 28760366 3 + 37823149 aac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41062536 3 + 50109623 aac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3037427 3 + 4464012 aac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567242 2 - 115148730 -ac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84189916 2 + 92844088 -ac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87534762 2 - 96509753 -ac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023366 2 - 13098629 -ac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995105 2 - 4483953 -ac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24621501 2 + 33263144 -ac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892046 2 - 14338769 -ac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 838656 2 + 1946073 -ac i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36242845 3 - 42659167 cac i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46038116 20 - 69331447 I e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5627083 2292 + 108171978 I e cebCap1.NW_016107750v1 1271125 1203 - 1807191 I e saiBol1.JH378157 8797856 768 - 16357246 I e calJac3.chrUn_GL286373 1877556 281 - 2117846 I a score=19454.000000 s hg38.chr22_GL383582v2_alt 7208 3 + 162811 gtt s panTro5.chr22 28760369 3 + 37823149 gtc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41062539 3 + 50109623 gtt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3037430 3 + 4464012 gtt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567244 3 - 115148730 gtt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84189918 3 + 92844088 gtt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87534764 3 - 96509753 gtt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023368 3 - 13098629 gtt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995107 3 - 4483953 gtt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24621503 3 + 33263144 gtt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892048 3 - 14338769 gtt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 838658 3 + 1946073 gtt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1877837 3 - 2117846 gcc i calJac3.chrUn_GL286373 I 281 C 0 s otoGar3.GL873526 36242848 3 - 42659167 att i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46038116 20 - 69331447 I e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5627083 2292 + 108171978 I e cebCap1.NW_016107750v1 1271125 1203 - 1807191 I e saiBol1.JH378157 8797856 768 - 16357246 I a score=399111.000000 s hg38.chr22_GL383582v2_alt 7211 56 + 162811 tgatcacagaagtcttatgtgtttattgttattgagtgagagaacacaaaaacacc s panTro5.chr22 28760372 56 + 37823149 tgatcacagaagtcttatgtgtttattgttattgagtgagagaacacaaaaacacc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41062542 56 + 50109623 tgatcacagaagtcttatgtgtttattgttattgagtgagagaacacaaaaacacc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3037433 54 + 4464012 tgatcacagaagtc--atgtgtttattgttattgagtgagagaacacaaaaacacc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567247 54 - 115148730 tgatcacagaagtcttatgtgtttattgttattgagt--gagaacacaaaaacacT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84189921 56 + 92844088 tgatcacagaagtcttacgtgtttattgttactgagtgagagaacacaaaaacatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87534767 56 - 96509753 tgatcacagaagtcttacgtgtttattgttactgagtgagagaacacaaaaacatt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023371 56 - 13098629 tgatcacagaagtcttacgtgtttattgttactgagtgagagaacacaaaaacatt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995110 56 - 4483953 tgatcacagaaggcttatgtgttttttgttactgagtgagagaacacaaaaacatt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24621506 56 + 33263144 tgatcacagaagtcttatgtgtttattgttactgagtgagagaacacaaaaacatt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892051 56 - 14338769 tgatcacagaagtcttatgtgtttattgttactgagtgagagaacacaaaaacatt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 838661 56 + 1946073 tgatcacagaagtcttatgtgtttattgttactgagtgagagaacacaaaaacact i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1877840 56 - 2117846 taatcacaggagtcttatgtgattattgttgttcagtgagagaacatagaaaCACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8798624 56 - 16357246 TAATCACAGGATTCTTATGTGATTATTGTTGTTCAGTGAGAGAACAAAAAAACGCT i saiBol1.JH378157 I 768 C 0 s otoGar3.GL873526 36242851 28 - 42659167 -----------------tACATTGATTGT-------TGAGTGAATAGAAAAG---- i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46038116 20 - 69331447 I e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5627083 2292 + 108171978 I e cebCap1.NW_016107750v1 1271125 1203 - 1807191 I a score=410048.000000 s hg38.chr22_GL383582v2_alt 7267 56 + 162811 t-tgagtttttcccTCAGGTTCCTTACGTGAAAAGATTAT-AAAGGGATCCTTGGTGC s panTro5.chr22 28760428 56 + 37823149 t-tgagtttttcccTCAGGTTCCTTAAGTGAAAAGATTAT-AAAGGGATCCTTGGTGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41062598 56 + 50109623 t-tgagtttttcccTCAGGTTCCTTAAGTGAAAAGATTAT-AAAGGGATCCTTGGTGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3037487 56 + 4464012 t-tgagtttttcccTCAGGTTCCTTAAGTGAAAAGATTAT-AAAGGGATCCTTGGTGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567301 52 - 115148730 T-----TTTTTCCCTCAGGTTCCTTAGGTGCAAAGATTAT-AAAGGGATCCTTGGTGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84189977 54 + 92844088 tttgagttttttccTCAGGTTCCTAAGGTGAAAA---TAT-AAAGGGATCCTTGGTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87534823 54 - 96509753 tttgagTTTTTTCCTCAGGTTCCTAAGGTGAAAA---TAT-AAAGGGATCCTTGGTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023427 54 - 13098629 tttgagttttttccTCAGGTTCCTAAGGTGAAAA---TAT-AAAGGGATCCTTGGTGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995166 54 - 4483953 tttgagttttttccTCAGGTTCCTAAGGTGAAAA---TAT-AAAGGGATCCTTGGTGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24621562 54 + 33263144 tttgagTTTTTTCCTCAGGTTCCTAAGGTGAAAA---TAT-AAAGGGATCCTTGGTGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892107 54 - 14338769 tttgagttttttccTCAGGTTCCTAAGGTGAAAA---TAT-AAAGGGATCCTTGGTGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 838717 54 + 1946073 tttgagTTTTTTCCTCAGGTTCCTAAGGTGAAAA---TAT-AAAGGGATCCTTGGTGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1877896 52 - 2117846 T-----TTTTTTCCTCAAGTTGCTTACGTAAAAAGATTAT-AAAGGGATCCCTAATGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8798680 52 - 16357246 T-----TTTTTCCCTCAAGTTGCTTAGGTTAAAAGCTTAT-AAAGGGATCCCTAATGT i saiBol1.JH378157 C 0 C 0 s micMur3.chr7 5629375 56 + 108171978 -TTGAGATTTTTCCCCATGTTCCTTAGGTGAAAAGATAAT-AAAGGGATCCTGGGTGC i micMur3.chr7 I 2292 I 24 s otoGar3.GL873526 36242879 50 - 42659167 --------TTTTCCTCATATTCCTTAGGTGAATAGATGATAAAAGGAATGCAGGGTGT i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46038116 20 - 69331447 I e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e cebCap1.NW_016107750v1 1271125 1203 - 1807191 I a score=58947.000000 s hg38.chr22_GL383582v2_alt 7323 9 + 162811 CATAAGGTT s panTro5.chr22 28760484 9 + 37823149 CATAAGGTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41062654 9 + 50109623 CATAAGGTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3037543 9 + 4464012 CATAAGGTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567353 9 - 115148730 CATAAGGTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84190031 9 + 92844088 CTTAAGTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87534877 9 - 96509753 CTTAAGTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023481 9 - 13098629 CTTAAGTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995220 9 - 4483953 CGTAAGTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24621616 9 + 33263144 CGTAAGTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892161 9 - 14338769 CGTAAGTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 838771 9 + 1946073 CGTAAGTTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1877948 9 - 2117846 CATAAGTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8798732 9 - 16357246 CCTAAGTTT i saiBol1.JH378157 C 0 C 0 s otoGar3.GL873526 36242929 9 - 42659167 TGAAAGGTT i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46038116 20 - 69331447 I e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5629431 24 + 108171978 I e cebCap1.NW_016107750v1 1271125 1203 - 1807191 I a score=792997.000000 s hg38.chr22_GL383582v2_alt 7332 116 + 162811 TGGggccatgcacaatggctgatgcctgtagtcccaacactttgggaggcggaggcaggaggatcacttgagcccaggagttcaagactggcctggg----------------------------------------------------cg-cggtggctcacg-------------------------------------------------ccagc s panTro5.chr22 28760493 116 + 37823149 TGGggccatgcacaatggctgatgcctgtagtcccaacactttgggaggctgcggcaggaggatcacttgagcccaggagttcaagactggcctggg----------------------------------------------------cg-tggtggctcacg-------------------------------------------------ccagc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41062663 116 + 50109623 TGGggccatgcacaatggctgatgcctgtagtcccaacactttgggaggctgaggcaggaggatcacttgagcccaggagttcaagacTggcctggg----------------------------------------------------cg-tggtggctcacg-------------------------------------------------ccagc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3037552 116 + 4464012 TGGggccatgcacaatggttgatgcctgtagtcccaacactttgggaggctgaggcaggaggatcacttgagcccaggagttcaagactggcctggg----------------------------------------------------cg-cggtggctcacg-------------------------------------------------ccagc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567362 116 - 115148730 TGGggccatgcacaatggctgatgcctgtagtcccaacactttgggaggctgaggcaggaggatcacttgagcccaggagttcaagaccagcctggg----------------------------------------------------ca-cggtggctcacg-------------------------------------------------ccagc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84190040 115 + 92844088 TGGggccatgcacaatggctgaggcctgtagtcccaacactttgggaggctgaggcaggaggatcacttcagccca-aagttcaagaccagcctggg----------------------------------------------------cg-cagtggctcacg-------------------------------------------------ccagc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87534886 115 - 96509753 TGGggccatgcacaatggctgaggcctgtagtcccaacactttgggaggctgaggcaggaggatcacttcagccca-aagttcaagaccagcctggg----------------------------------------------------cg-cagtggctcacg-------------------------------------------------ccagc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023490 115 - 13098629 TGGggccatgcacaatggctgaggcctgtagtcccaacactttgggaggctgaggcaggaggatcacttcagccca-aagttcaagaccagcctggg----------------------------------------------------cg-cagtggctcacg-------------------------------------------------ccagc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995229 115 - 4483953 TGGggccatgcacaatggctgaggcctgtagtcccaacactttgggaggctgaggcaggaggatcacttgagtcca-aagttcaagaccagcctggg----------------------------------------------------cg-cagtggctcaca-------------------------------------------------ccagc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24621625 115 + 33263144 TGGggccatgcacaatggctgaggcctgtagtcccaacactttgggaggctgaggcaggaggatcacttgagccca-aagttcaagaccagcctggg----------------------------------------------------cg-cagtggctcacg-------------------------------------------------ccagc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892170 115 - 14338769 TGGggccatgcacaatggctgaggcctgtagtcccaacactttgggaggctgaggcaggaggatcacttgagtcca-aagttcaagaccagcctggg----------------------------------------------------cg-cagtggctcacg-------------------------------------------------ccagc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 838780 115 + 1946073 TGGggccatgcacaatggctgaggcctgtagtcccaacactttgggaggctgaggcaggaggatcatttgagccca-aagttcaagactagcctggg----------------------------------------------------cg-cagtggctcacg-------------------------------------------------ccagc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1877957 116 - 2117846 TGGAACCATgtacaatgactgatgcctgtaatctcaacactctgggatgctga-gcaggaggatcacttgagcccagttagttcagaccagTGTGAG----------------------------------------------------TGCCGGTGGCTCAAG-------------------------------------------------CCAGC i calJac3.chrUn_GL286373 C 0 M 426 s saiBol1.JH378157 8798741 218 - 16357246 TGGAACCATgtacaatggctgatgcctgtaatctcaacactttgggaggctgaggcaggaggatcacttgagcccaggagttgaagaccagTGTAAgtgcggtggctcatggcagcactttgggaggccaaggcaggtggatcgcttgaggtcaaaagatcaagactagcctggccaacgtagtgaaaccccaactttactaaaaatataaaactagc i saiBol1.JH378157 C 0 I 23 e canFam3.chr10 46038116 20 - 69331447 I e otoGar3.GL873526 36242938 0 - 42659167 C e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5629431 24 + 108171978 I e cebCap1.NW_016107750v1 1271125 1203 - 1807191 I a score=19428.000000 s hg38.chr22_GL383582v2_alt 7448 3 + 162811 act s panTro5.chr22 28760609 3 + 37823149 act i panTro5.chr22 C 0 C 0 s panPan2.chr22 41062779 3 + 50109623 act i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3037668 3 + 4464012 act i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567478 3 - 115148730 act i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84190155 3 + 92844088 act i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87535001 3 - 96509753 act i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023605 3 - 13098629 act i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995344 3 - 4483953 act i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24621740 3 + 33263144 act i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892285 3 - 14338769 act i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 838895 3 + 1946073 act i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8798982 3 - 16357246 aat i saiBol1.JH378157 I 23 I 9 e canFam3.chr10 46038116 20 - 69331447 I e otoGar3.GL873526 36242938 0 - 42659167 C e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5629431 24 + 108171978 I e cebCap1.NW_016107750v1 1271125 1203 - 1807191 I e calJac3.chrUn_GL286373 1878073 426 - 2117846 M a score=501456.000000 s hg38.chr22_GL383582v2_alt 7451 79 + 162811 ttgggaggccacggc-gggtggattacttgaggtcaagagtttgagac-------------------------------cagcctggccaacatg-gtgaaact-ccgtcttt s panTro5.chr22 28760612 80 + 37823149 ttgggaggccaaggc-gggtggattacttgaggtcaagagtttgagac-------------------------------cagcctggccaacatg-gtgaaactcccgtcttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41062782 80 + 50109623 ttgggaggccaaggc-gggtggattacttgaggtcaagagtttgagac-------------------------------cagcctggccaacatg-gtgaaactcccgtcttt i panPan2.chr22 C 0 I 2905 s gorGor5.CYUI01015375v1 3037671 79 + 4464012 ttgggaggccaaggc-gggtggattacttgagatcaagagtttgagac-------------------------------cagcctggacaacatg-gtgaaact-ccgtcttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567481 79 - 115148730 ttgggaggccaaggc-gggtggattgcgtgcggtcaagagtttgaaac-------------------------------cagcctggccaacatg-gtgaaact-ctgtcttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84190158 79 + 92844088 ttgggaggccaaggc-gggtggattgcttgaggtcaagagtttgggag-------------------------------cagcctggccaacatg-gtgaaact-ccgtctct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87535004 79 - 96509753 ttgggaggccaaggc-gggtggattgcttgaggtcaagagtttgggag-------------------------------cagcctggccaacatg-gtgaaact-ccgtctct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023608 79 - 13098629 ttgggaggccaaggc-gggtggattgcttgaggtcaagagtttgggag-------------------------------cagcctggccaacatg-gtgaaact-ccgtctct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995347 79 - 4483953 ttgggaggccaaggc-gggtggattgcttgaggtcaagagtttgagag-------------------------------cagcctggccaacatg-gtgaaact-ccgtctct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24621743 79 + 33263144 ttgggaggccaaggc-gggtggattgcttgaggtcaagagtttgagag-------------------------------cagcctggccaacatg-gtgaaact-ccgtctct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892288 79 - 14338769 ttgggaggccaaggc-gggtggattgcttgaggtcaagagtttgagag-------------------------------cagcctggccaacatg-gtgaaact-ccgtctct i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 838898 79 + 1946073 ttgggaggccaaggt-gggtggattgcttgaggtcaagagtttgagag-------------------------------cagcctggccaacatg-gtgaaact-ccgtctct i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1878516 108 - 2117846 ttgggaggctaaggcagggagaattgcttgaact-gggaggtggagggtacagtgagccaagattgcagcactgcacttcagcctgggcaacaagagtgaaact-ctgtc--- i calJac3.chrUn_GL286373 M 426 C 0 s saiBol1.JH378157 8798994 108 - 16357246 ttgggaggctgaggcagggagaattgcttgaact-gggaggtggagggtgcagtgagccaagattgcaccactgtactccagcctgggcaacaagagtgaaaca-ctgtc--- i saiBol1.JH378157 I 9 C 0 e canFam3.chr10 46038116 20 - 69331447 I e otoGar3.GL873526 36242938 0 - 42659167 C e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5629431 24 + 108171978 I e cebCap1.NW_016107750v1 1271125 1203 - 1807191 I a score=1222033.000000 s hg38.chr22_GL383582v2_alt 7530 223 + 162811 tc---------taaaaatataaaactagctggatgtggtggtccatgcctgtaatcccagctacttgggaggctgaggcagggagaattacttga-accaggaggtggaaggtgcagtgagccaagatcacaccagtgcactccagcctgggcaacaacagcgagactccatctcaaaaaaa--------------agaaaagaa-----------a--------------------------------------aaaagaccagcctg------------------------------------------------------------ggcaatg--gagagacgccatctctatt----t s panTro5.chr22 28760692 225 + 37823149 tc---------aaaaaatataaaactagctggatgtggtggtccatgcctgtaatcccagctacctgggaggctgaggcagggagaatcacttga-accaggaggtggaaggtgcagtgagccaagatcacaccagtgcactccagcctgggcaacaacagcgagactccatctcaaaaaaa--------------agaaaagaa-----------a--------------------------------------aaaagaccagcctg------------------------------------------------------------ggcaatggagagagaccccgtctctatt----a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41065767 226 + 50109623 Tc---------taaaaatataaaactagctggatgtggtggtccatgcctgtaatcccagctacctgggaggctgaggcagggagaatcacttga-accaggaggtggaaggtgcagtgagccaagatcacaccagtgcactccagcctgggcaacaacagcgagactccatctcaaaaaaa--------------agaaaagaa-----------a--------------------------------------aaaagaccagcctg------------------------------------------------------------ggcaatg--gagagaccccatctctatt-aaaa i panPan2.chr22 I 2905 C 0 s gorGor5.CYUI01015375v1 3037750 222 + 4464012 tc---------taaaaatataaaactagctggatgtggtggtccatgcctgtaatcccagctacttgggaggctgaggcagggagaatcacttga-accgggaggtggaaggtgcagtgagccaagatcacaccagtgcactccagcctgggcaacaacagcgagactccatcccaaaaaaa--------------agcaaagaa-----------a--------------------------------------aaaagaccagcctg------------------------------------------------------------ggcaatg--gagagaccccatctctatt----- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567560 234 - 115148730 tc---------taaaaatataaaactagctggatgtggtggtccacgcctgtaatcccagctacttgggaggccgaggcagggagaatcacttga-accgagaggtggaaggtgcagtgagccaagatcatgccactgcactccagcctgggcaacaacagcgagactccatctcaaaaaaa--------------aaaaaaaaagaaagaaaaaga--------------------------------------aaaagaccagcctg------------------------------------------------------------ggcaatg--gagagaccccatctctatt----a i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84190237 228 + 92844088 tc---------taaaaatataaaactagccggatatggtggtccacgcctgtaatcccagctacgtgggaggctgaggcagggagaatcacttga-accgggaagcggagggtgcagtgagccaagatcacgccactgcactccagcctgggcaacaacagcgagactccatctcaaataaa-------aaagaaagaaaaagaa-----------a--------------------------------------aaaagaccagcctg------------------------------------------------------------ggcaatg----gagaccccatctctaca----a i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87535083 228 - 96509753 tc---------taaaaatataaaactagccggatatggtggtccacgcctgtaatcccagctacgtgggaggctgaggcagggagaatcacttga-accgggaagcggagggtgcagtgagccaagatcacgccactgcactccagcctgggcaacaacagcgagactccatctcaaataaa-------aaagaaagaaaaagaa-----------a--------------------------------------aaaagaccagcctg------------------------------------------------------------ggcaatg----gagaccccatctctaca----a i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023687 232 - 13098629 tc---------taaaaatataaaactagccggatatggtggtccacgcctgtaatcccagctacgtgggaggctgaggcagggagaatcacttga-accgggaagcggagggtgcagtgagccaagatcacgccactgcactccagcctgggcaacaacagcgagactccatctcaaataaa---aaagaaagaaagaaaaagaa-----------a--------------------------------------aaaagaccagcctg------------------------------------------------------------ggcaatg----gagaccccatctctaca----a i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995426 230 - 4483953 tc---------taaaaatataaaactagctagatgtggtggtccacgcctgtaatcccagctacttgggaggctgaggcagggagaatcacttga-accaggaagcggagggtgcagtgagccaagatcacgccactgcactccagcctgggcaacaacagcgagactccatctcaaaaaaa-------aaaaaaaaaaaaaaaa-----------a--------------------------------------aaaagaccagcctg------------------------------------------------------------ggcaatg--gagagaccccatctctaca----a i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24621822 233 + 33263144 tc---------taaaaatgtaaaactagctggatgtggtggtccacgcctgtaatcccagctacttgggaggctgaggcagggagaatcacttga-accgggaagcggagggtgcagtgagccaagatcacgccactgcactccagcctgggcaacaacagcgagactccatctcaaaaaaaaaaaaaaaaagaaagaaaaagaa-----------a--------------------------------------aaaagaccagcctg------------------------------------------------------------ggcaatg--gagagaccccatctct-------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892367 242 - 14338769 tc---------taaaaatataaaactagctagatgtggtggtccacgcctgtaatcccagctacttgggaggctgaggcagggagaatcacttga-accaggaagcggagggtgcagtgagccaagatcatgccactgcactccagcctgggcaacaacagcgagactccatctcaaaa------------------------------------------------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaa--aaaaaa------------------ i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 838977 227 + 1946073 tc---------taaaaatataaaactagctggatgtggtggtccacgcctgtaatcccagctacttgggaggctgaggcagggagaatcacttga-accaggaagtggagggtgcagtgagccaagatcacgccactgcactccagcctgggcaacaacagcgagactccatctcaataaaa---------aaaaagaaaaagaa-----------a--------------------------------------aaaagaccagcctg------------------------------------------------------------ggcaatg--gagagaccccatccctaca----- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1878624 236 - 2117846 tcaaaaaaaaaaaaaaaaagaaaaaaggccgggcgtggtggctcacacctgtaatcctagcactttgggaggccgaggtgggcag-atcacctgaggtcaggagtttgaga-------------------------------ctagcctggccaac-atggagaaact-aatctcttaaaaa-------aaaaaaaaGAAAAAAA-----------ATATATGTATGTATGTAAAGTTTCTGGGTCTT-------AAAAAAAATGCCTG------------------------------------------------------------GGCAATG--GATAGACCCCATCTCTACC----- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8799102 233 - 16357246 tc---------aaaaaaaagaaaaaaggctgggcgcagtggctcacacctgtaatcccagcactttgggaggccgaggtgggcag-atcacctgaggtcaggagtttgaga-------------------------------ccagtctggccaac-atggagaaact-catctctTGAAAA-------AAAAGAAGAAAAAAAA-----------ATATA--TATGTATGTAAAGTTTCTGGGTGTTAAAAAAAAAAAAAAACGCCTG------------------------------------------------------------GGCAATG--GAAAGACCCCATCTCTACCC---- i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46038116 20 - 69331447 I e otoGar3.GL873526 36242938 0 - 42659167 C e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5629431 24 + 108171978 I e cebCap1.NW_016107750v1 1271125 1203 - 1807191 I a score=55179.000000 s hg38.chr22_GL383582v2_alt 7753 11 + 162811 aaaaaa-----------aaaaa s panTro5.chr22 28760917 11 + 37823149 aaaaaa-----------aaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41065993 11 + 50109623 aaaaaa-----------aaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3037972 7 + 4464012 ----aa-----------aaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567794 11 - 115148730 aaaaaa-----------aaaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84190465 11 + 92844088 aaaaaa-----------aaaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87535311 11 - 96509753 aaaaaa-----------aaaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023919 11 - 13098629 aaaaaa-----------aaaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995656 22 - 4483953 aaaaaaacaaaaAAACCAAAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24622055 9 + 33263144 --acaa-----------aaaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892609 9 - 14338769 --aaac-----------aaaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 839204 5 + 1946073 -----------------aaaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1878860 5 - 2117846 -----------------AAAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8799335 10 - 16357246 -AAAAA-----------AAAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1272328 11 - 1807191 aaaaaa-----------aaaaa i cebCap1.NW_016107750v1 I 1203 C 0 e canFam3.chr10 46038116 20 - 69331447 I e otoGar3.GL873526 36242938 0 - 42659167 C e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5629431 24 + 108171978 I a score=67417.000000 s hg38.chr22_GL383582v2_alt 7764 7 + 162811 aaaaGTA s panTro5.chr22 28760928 7 + 37823149 aaaAGTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41066004 7 + 50109623 AAAAGTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3037979 7 + 4464012 aaaaGTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567805 7 - 115148730 aaaAGTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84190476 7 + 92844088 aAAAGTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87535322 7 - 96509753 aAAAGTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023930 7 - 13098629 aAAAGTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995678 7 - 4483953 AAAACTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24622064 7 + 33263144 aaaaGTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892618 7 - 14338769 aaaaGTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 839209 7 + 1946073 AAAGGTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1878865 7 - 2117846 AAAAGTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8799345 7 - 16357246 AAAAGTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1272339 7 - 1807191 aaaaGTA i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46038136 7 - 69331447 AAAAATC i canFam3.chr10 I 20 C 0 e otoGar3.GL873526 36242938 0 - 42659167 C e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5629431 24 + 108171978 I a score=141667.000000 s hg38.chr22_GL383582v2_alt 7771 16 + 162811 TGGGAGTCCTCAGTGA-- s panTro5.chr22 28760935 16 + 37823149 TGGGAGTCCTCAGTGA-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41066011 16 + 50109623 TGGGAGTCCTCAGTGA-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3037986 16 + 4464012 GGGGAGTCCTCAGTGA-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567812 16 - 115148730 TGGGAGTCCTCAGTGA-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84190483 16 + 92844088 TGGGACTCCTCAGTGA-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87535329 16 - 96509753 TGGGACTCCTCAGTGA-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023937 16 - 13098629 TGGGACTCCTCAGTGA-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995685 16 - 4483953 TGGGACTCCTCAGTGA-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24622071 16 + 33263144 TGGGACTCCTCAGTGA-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892625 16 - 14338769 TGGGACTCCTCAGTGA-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 839216 16 + 1946073 TGGGAATCCTCAGTGA-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1878872 16 - 2117846 TGGGAATCCTCAGTGA-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8799352 16 - 16357246 TAGGAATCCTCAGTGA-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1272346 15 - 1807191 TAGGAATCCTCAGTG--- i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36242938 16 - 42659167 TGGGAATCCTCAAAAC-- i otoGar3.GL873526 C 0 I 2 s canFam3.chr10 46038143 18 - 69331447 TGGGAATGTTTGGGGTGA i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I e micMur3.chr7 5629431 24 + 108171978 I a score=735770.000000 s hg38.chr22_GL383582v2_alt 7787 73 + 162811 TCATACCTATAGATTCCAAA-CCCCTTCTCCATCATTTGGATTGCCCTGGGAAGCACAAGAGAAGACCACCATC s panTro5.chr22 28760951 73 + 37823149 TCATACCTATAGATTCCAAA-CCCCTTCTCCATCATTTGGATTGCCCTGGGAAGCACAAGAGAAGACCACCATC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41066027 73 + 50109623 TCATACCTATAGATTCCAAA-CCCCTTCTCCATCATTTGGATTGCCCTGGGAAGCACAAGAGAAGACCACCATC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3038002 73 + 4464012 TCATACCTATAGATTCCAAA-CCCCTTCTCCATCATTTGGATTGCCCTGGGAAGCACAAGAGAAGACCACCATC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567828 74 - 115148730 TCATACCTATAGATTCCAAACCCCCTTCTCCATCATTTGGATTGCCCTGGGAAGGACAAGAGAAGACCACTATC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84190499 74 + 92844088 TGATGCCTATAGATTCCAAACCCCGTTCTCTATCATTTGGATTGCCCTGGGAAGGACGAGAGAAGACTACCATC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87535345 74 - 96509753 TGATGCCTATAGATTCCAAACCCCGTTCTCTATCATTTGGATTGCCCTGGGAAGGACGAGAGAAGACTACCATC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7023953 74 - 13098629 TGATACCTATAGATTCCAAACCCCGTTCTCTATCATTTGGATTGCCCTGGGAAGGACGAGAGAAGACTACCATC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995701 74 - 4483953 TGATACCTATAGATTCCAAACCCCCTTCTCTATCATTTGGATTGCCCTGGGAAGGACGAGAGAAGACTACCATC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24622087 74 + 33263144 TGATACCTATAGATTCCAAACCCCCTTCTCTATCATTTGGATTGCCCTGGGAAGGACGAGAGAAGACTACCATC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892641 74 - 14338769 TGATACCTATAGATTCCAAACCCCCTTCTCTATCATTTGGATTGCCCTGGGAAGGACGAGAGAAGACTACCATC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 839232 74 + 1946073 TCATACCTATAGATTCCAAAGCCCCTTCTCTATCATTTGGATTGCCCTGAGAAGGACGAGAGAAGACTACCATC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1878888 71 - 2117846 TCACACCTGTAGATACCAAACTCCCTTCTCCATCATTTGGATTGCCCTGGGAAGGACGA---AAGACCATCATC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8799368 74 - 16357246 TCACAGCTATAGATACCAAACGCACTTCTCTATCATTTGGATTGCCCTGGGAAGGATGAGAGAAGACCATCATC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1272361 74 - 1807191 TCACACCTATAGATACCAAACCCCCTTCTCCATCATTTGGATTGCCCTGGGAAGGACGAGAGAACACCATCATC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5629455 74 + 108171978 TCATACCTATAGATCCTGAACCCCTTTCCCCAGCATCTGGACTGCCCAGGGAAGGGACAGAGGAGACCACCATC i micMur3.chr7 I 24 I 5 s otoGar3.GL873526 36242956 74 - 42659167 GCATGTCAATAGATCCTGAACCCTTTCCCTCAGCATTTGGACTGCCCAGGGAAGGAACAGAGATTACCTCCAAA i otoGar3.GL873526 I 2 C 0 s canFam3.chr10 46038161 56 - 69331447 CTGTACCTATAGGTACTGAACCCCTCTCTCCAGCATTTAG--------TGAAAGAACTATTGAG---------- i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4987957 1740 - 6317780 I a score=1277511.000000 s hg38.chr22_GL383582v2_alt 7860 114 + 162811 CAAACAG----AGATCAGTTCTTGAACCTGTGTTGAT---GTTTATT---CTGCCAC-TGAGAGGTACACCAG---GGTTTCCAAAGACAGTAGGAATATTTCTGTTCTC--TGTGTATATTGAACAGCT s panTro5.chr22 28761024 114 + 37823149 CAAACAG----AGATCAGTTCTTGAACCTGTGTTGAT---GTTTATT---CTGCCAC-TGAGAGGTACACCAG---GGTTTCCAAAGACAGTAGGAATATTTCTGTTCTC--TGTGTATATTGAACAGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41066100 114 + 50109623 CAAACAG----AGATCAGTTCTTGAACCTGTGTTGAT---GTTTATT---CTGCCAC-TGAGAGGTACACCAG---GGTTTCCAAAGACAGTAGGAATATTTCTGTTCTC--TGTGTATATTGAACAGCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3038075 116 + 4464012 CAAACAG----AGATCAGTTCTTGAACCTGCGTTGAT---GTTTATT---CTGCCAC-TGAGAGGTACACCAG---GGTTTCCAAAGACAGTAGGAATATTTCTGTTCTCTGTGTGTATATTGAACAGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106567902 116 - 115148730 CAAACAG----AGATCAGTTCTTGAACCTGGGTTGAT---GTTTATT---CTGCCAC-CGAGAGGTACACCAG---AGTTTCCAAAGACAGTAGGAATATTTCTGTTCGCTGTGTGTATATTGAACAGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84190573 119 + 92844088 CAAACAG----AGATCAGTTCTTGAACTGGGGTTGAT---GTTTATTTTCCTGCCAC-TGAGAGGTAGACCAG---AGTTTGCAAAGACAGTAGAAATATTTCTGTTCTCTGTGTGTATATTGAATAGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87535419 119 - 96509753 CAAACAG----AGATCAGTTCTTGAACTGGGGTTGAT---GTTTATTTTCCTGCCAC-TGAGAGGTAGACCAG---AGTTTGCAAAGACAGTAGAAATATTTCTGTTCTCTGTGTGTATATTGAATAGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7024027 119 - 13098629 CAAACAG----AGATCAGTTCTTGAACTGGGGTTGAT---GTTTATTTTCCCGCCAC-TGACAGGTAGACCAG---AGTTTGCAAAGACAGTAGAAATATTTCTGTTCTCTGTGTGTATATTGAATAGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995775 119 - 4483953 CAAACAG----AGATCAGTTCTTGAACCGGGGTTGAT---GTTTATTTTCCTGCCAC-TGAGAGGTACACCAG---AGTTTGCAAAGACAGTAGGAATATTTCTGTTCTCTGTGTGTATATTGAATAGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24622161 119 + 33263144 CAAACAG----AGATCAGTTCTTGAACCGGGGTTGTT---GTTTATTTTCCTGCCAC-TGAGAGGTACACCAG---AGTTTGCAAAGACCGTAGGAATATTTCTGTTCTCTGTGTGTATATTGAATAGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892715 119 - 14338769 CAAACAG----AGATCAGTTCTTGAACCGGGGTTGAT---GTTTATTTTCCTGCCAC-TGAGAGGTACACCAG---AGTTTGCAAAGACAGTAGGAATATTTCTGTTCTCTGTGTGTATGTTGAATAGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 839306 116 + 1946073 CAAAC------AGATCAGTTCTTGAACCGGAGTTGAT----TTTATTCTCCTGCCAC-TGAGAGGTACACCAG---AGTTTGCAAAGACAGTAGGAATATTTCTGTTCTCTGTGTGTATATTGAATAGCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1878959 123 - 2117846 CAAACAAAC--AGATCAGTTCTTGAACCGGGGCTGATGTTGTTTATTCTCCTGCCAC-TAAGAGGTA-CCCAG---AGTTTACAGAGACAGTAGGAATATTTCCATTCTCCGTATGTATACTGAACAGCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8799442 122 - 16357246 CAAACAG----AGATCAGTTCTTGAACCGGGGTTGATACTGTTTATTCTCCTGCCAC-TAAGAGGTACCCCAG---AGTTTACAAAGACAGTAGGAATATTTCTATTCTCCGTATGTATATTGAACAGCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1272435 126 - 1807191 CAAACAAACAGAGATCAGTTCTTGAACCGGGGTTGATGTTGTTTATTCTCCTGCCAC-TAAGAGGTACCCCAG---AGTTTACAAAGACAGTAGGAATATTTCTATTCTCCCTATGTATATTGAACAGCT i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5629534 118 + 108171978 CAAACAG----AGATCAGTTCTTTAACCTGAGTTGAC---ATTTATTCTCCTATCAC-TTAGAGCTACACCAGAGTAGTTTGCAAAAACAGTAGGAATATTTCTATTC----TGTGTACATTGAACAGCT i micMur3.chr7 I 5 I 89 s proCoq1.NW_012136747v1 4989697 115 - 6317780 CAAACAG----AGATCAGTTCCTTAACCTGAATTGAC---ATTTATTCTCCTATCAC-TTAGAGCTACACCAG---AGTTTGCAAAAACAGTAGGAATATTTCTATTC----TGTGTACACTGAACAGCT i proCoq1.NW_012136747v1 I 1740 C 0 s otoGar3.GL873526 36243030 96 - 42659167 -GAAAAG----AGATCAGTTCTTAAACCTGACTTGAC---ATTTATTCTTCTATTACGGTAGAGCCACAACAA---AGTTTGCAAAAAC---AGGAATATTTCTG-------TGTGT------------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46038217 110 - 69331447 --AGCAA----AGGGAAGTACTT----TTGTGTTGAT---ATTTATTCTCTTGTCAC-TG-GAGCTATAGACC---AATTTGCAAAAACAGTAGAAAGATTT--GTTTTCTGTGTGTGCATTAAACAGCT i canFam3.chr10 C 0 C 0 a score=965194.000000 s hg38.chr22_GL383582v2_alt 7974 87 + 162811 GTGCACCTAAGCAGGGTGCCT----GA---GTAGGAAGTTAATTTCATTTTAAGGGCTGGAGCTTGTTACAAGTAGCGGAGCCAAGCCTTTGCA s panTro5.chr22 28761138 86 + 37823149 GTGCACCT-AGCAGGGTGCCT----GA---GTAGGAAGTTAATTTCATTTTAAGGGCTGGAGCTTGTTACAAGTAGCGGAGCCAAGCCTTTGCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41066214 86 + 50109623 GTGCACCT-AGCAGGGTGCCT----GA---GTAGGAAGTTAATTTCATTTTAAGGGCTGGAGCTTGTTACAAGTAGCGGAGCCAAGCCTTTGCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3038191 86 + 4464012 GTGCACCT-AGCAGGGTGCCT----GA---GTAGGAAGTTAATTTCATTTTAAGGGCTGGAGCTTGTTACAAGTAGCGGAGCCAAGCCTTTGCG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106568018 86 - 115148730 GTGCACCT-AGCAGGGTGCCT----GA---GTAGGAAGTTAATTTCATTTTAAGGGCTGGAGCTTGTTACAAGTAGCGGAGCCAAGCCTTTGCG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84190692 86 + 92844088 GTGCACCT-AGCAGGGTGCCT----GA---GTAGGAAGTTAATTTCATTTTAAGGGCTAGAGCTTGTTACAAGTAGTGGAGCCAAGCCTTTGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87535538 86 - 96509753 GTGCACCT-AGCAGGGTGCCT----GA---GTAGGAAGTTAATTTCATTTTAAGGGCTAGAGCTTGTTACAAGTAGTGGAGCCAAGCCTTTGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7024146 86 - 13098629 GTGCACCT-AGCAGGGTGCCT----GA---GTAGGAAGTTAATTTCATTTTAAGGGCTAGAGCTTGTTACAAGTAGTGGAGCCAAGCCTTTGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995894 86 - 4483953 GTGCACCT-AGCAGGGTGCCT----GA---GTAGGAAGTTAATTTCATTTTAAGGGCTAGAGCTTGTTACAAGTAGTGGAGCCAAGCCTTTGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24622280 86 + 33263144 GTGCACCT-AGCAGGGTGCCT----GA---GTAGGAAGTTAATTTCATTTTAAGGGCTAGAGCTTGTTACAAGTAGTGGAGCCAAGCCTTTGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892834 86 - 14338769 GTGCACCT-AGCAGGGTGCCT----GA---GTAGGAAGTTAATTTCATTTTAAGGGCTAGAGCTTGTTACAAGTAGTGGAGCCAAGCCTTTGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 839422 85 + 1946073 GTGCACCT-AGCAGGGTGCCT----GA----TAGGAAGTTAATTTCATTTTAAGGGCTAGAGCTTGTTACAAGTAGTGGAGCCAAGCCTTTGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1879082 86 - 2117846 GTGCACCT-AGCAGGGTGCCT----GA---GCAGGAAGTTAAGTTCATTTTAATGGCTGGAGCTTGTTACAAGTAGTGGAGCCAGGCCTTTGCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8799564 86 - 16357246 GTGCACCT-AGCAGGGTGCCT----GA---GTAGGAAGTTAAGTTCATTTTAAGGGCTGGAGCTTGTTACAAGTAGTGGAGCCAGGCCTTTGCG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1272561 86 - 1807191 GTGCACCT-AGCAGGGTGCCT----GA---GTAGGAAGTTCAGTTCATTTTAACGGCTGGAGCTTGTTACAAGTAGTGGAGCCAGGCCTTTGCA i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4989812 89 - 6317780 GTGTCCCT-AGCAGGGTGTCT----AACTGGAAGGAAGTTAATTTCATTTTAAGGACCAGTGCTTGTTGCAAATAGAGAGGCTAGGCCACTGAG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36243126 74 - 42659167 ----CCC------------CT----GACTAGAAGGAAAGTAATTTCATTTTATGGACTGGTGCCTGTTGCAAATAAAGGGGCTACACCTCTGAG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46038327 90 - 69331447 GTGTTCCT-AGCAGAGTGCCTAACCGA---GCAGGAAGTGACTTTCCTCTTCAGGACTGGTGTTTGTGACAGGTACATGGGCTAGGCCTCTGAG i canFam3.chr10 C 0 C 0 e micMur3.chr7 5629652 89 + 108171978 I a score=1574709.000000 s hg38.chr22_GL383582v2_alt 8061 116 + 162811 CATCCATTTTCTTCAGAACCCAAGGAAAACTAGCCCATCTTGACAGCTCTACTTTTGCGCCTGT---TAGTGCTGCCCTGATCC----CTGACAGGAAGAGCTGGCTAATTTTAGATAATCTG s panTro5.chr22 28761224 116 + 37823149 CATCCATTTTCTTCAGAACCCAAGGAAAACTAGCCCATCTTGACAGCTCTACTTTTGCGCCTGT---TAGTGCTGCCCTGATCC----CTGACAGGAAGAGCTGGCTAATTTTAGATAATCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41066300 116 + 50109623 TATCCATTTTCTTCAGAACCCAAGGAAAACTAGCCCATCTTGACAGCTCTACTTTTGCGCCTGT---TAGTGCTGCCCTGATCC----CTGACAGGAAGAGCTGGCTAATTTTAGATAATCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3038277 120 + 4464012 CATCCATGTTCTTCAGAACCCAAGGAAAACTAGCCCATCTTGACAGCTCTACTTTTGCGCCTGT---TAGTGCTGCCCTGATCCCTCTCTGACAGGAAGAGCTGGCTAATTTTGGATCATCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106568104 120 - 115148730 CATCCATTTTCTTCAGAACCCAAGGAAAACTAGCCTATCTTGACAGCTCTACTTTTGCGCCTGT---TAGTGCTGCTCTGATCCCTCTCTGACAGCAAGAGCTGGCTAATTTTGGATAATCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84190778 120 + 92844088 CATCCATTTTCTTCAGAACCCAAGGAAAACTAGCCCATTTTGACAGCTCTACTTTTGCGCCTGT---TAGTGCTGCTCTGATCCCTCTCTGACAGCAAGAGCTGGCTAATTTTGGATAATCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87535624 120 - 96509753 CATCCATTTTCTTCAGAACCCAAGGAAAACTAGCCCATTTTGACAGCTCTACTTTTGCGCCTGT---TAGTGCTGCTCTGATCCCTCTCTGACAGCAAGAGCTGGCTAATTTTGGATAATCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7024232 120 - 13098629 CATCCATTTTCTTCAGAACCCAAGGAAAACTAGCCCATTTTGACAGCTCTACTTTTGCGCCTGT---TAGTGCTGCTCTGATCCCTCTCTGACAGCAAGAGCTGGCTAATTTTGGATAATCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3995980 120 - 4483953 CATCCATTTTCTTCAGAACCCAAGGAAAACTAGCCCATTTTGACAGCTCTACTTTTGCGCCTGT---GAGTGCTGCTCTGATCCCTCTCTGACAGCAAGAGCTGGCTAATTTTGGATAATCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24622366 120 + 33263144 CATCCATTTTCTTCAGAACCCAAGGAAAACTAGCCCATTTTGACAGCTCTACTTTTGCACCTGT---TAGTGCTGCTCTGATCCCTCTCTGACAGCAAGAGCTGGCTAATTTTGGATAATCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13892920 120 - 14338769 CATCCATTTTCTTCAGAACCCAAGGAAAACTAGCCCATTTTGACAGCTCTACTTTTGCGCCTGT---TAGTGCTCCTCTGATCCCTCTCTGACAGCAAGAGCTGGCTAATTTTGGATAATCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 839507 119 + 1946073 CATCCATTTTCTTCAGAACCCAAGGAAAACTAGCCCATTTTGACAGCTCTACTTTTGTGCCTGT---TAGTGCTGCTCGGATCCCTCTCTGACAGCAAGAGCTGGCTAATTTTGGAT-ATCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1879168 123 - 2117846 CATCCATTTTCTTCAGAACCCAGGGAAAACTAGCCCATCTTGTCAGCTCTAGTTTTGCACCTGTTAGTAGTGCTGCTCTCATCCCTCTCTGACAGCAAGAGCTGGCTAATTTTGGATCATCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8799650 120 - 16357246 CATCCATTTTCTTCAGAACCCAGGGAAAACTAGCCCATCTTGTCAGCTCTAGTTTTGCACATGT---TAGTGCTGCTCTCATCCCTCTCTGACAGCAAGAGCTGGCTAATTTTGGATCATCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1272647 120 - 1807191 CATCCATTTTCTTCAGAACCCAGGGAAAACTAGCCCATCTTGTCAGCTCTAGTTTTGCACCTGC---TGGTGCTGCTCTCATCCCTCTCTGACAGCAAAAGCTGGCTAATTTTGGATCATCTG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5629741 120 + 108171978 CATCCATTTTCTCCAGAACCCAGGGAAAACTAGCCCATCTTGTCAGCTCTACTTCTGTGCCTGT---TAGTGCTGTTCTGATCCCTCTCTGACAGCAAGAGCTGGTTAATTTTGGATAATCTG i micMur3.chr7 I 89 C 0 s proCoq1.NW_012136747v1 4989901 119 - 6317780 CATCCATTTTCTCTAGAA-CCAGGGAAAACTAGCCCATCTTGTCAGCTCTACTTCCGTGCCTGT---TAGTGCTGCTCTGATCCCTCTCTGACAGCAAGAGTTGGTTAATTTTGGATAATCTG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36243200 112 - 42659167 GAACCATTCTCTCCAGAACCCAGGGAAAACTAGCCCATCTTGCCAGCTCTCCTTCTGTGCCTGT---TAGTGCTGCTCTGATCC--------CAGCAAGAGCTAATTAATTTTGGATAATCTG i otoGar3.GL873526 C 0 I 106 s canFam3.chr10 46038417 118 - 69331447 -CTGCCTTCTTTTCAGAAGCCAGGGAAGAACGGCCCAGCTTAGCAGCCTTGCTTCTTCATCCCG---TAGTGTTACTCCAATCTCTC-CCAACAGCAAGAGCTGGCTAATTTTGGATAATTTA i canFam3.chr10 C 0 C 0 a score=6396398.000000 s hg38.chr22_GL383582v2_alt 8177 484 + 162811 TGCCCTGACACTGAAGTGTC----------TAATCATAG---------------------------------------------------------------------GGGCTATAG-------------------------------------------------------------------------------------------------------------------AAACA--ACTACATTAAC-AAGTCGTCCAGCCTCATGCCCAATGTCACAATTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGACATGCAAGGCTCTGAGAAAAATAATTCAATCCAATTTACAGCAAACACCACATTTCAAGAAAAGGG-AAAGAACAGGTGATGTGTATACCAAGGTCCCACTTGCTCAGGCAAAAA----GAGGCTGCAGAA-----------AATTGGTTCATCAATGGAATTCTATCACAAAGTGACCATTGTATAGTGAGTTTATTTGTGCTCTAAAATAGT-----ATCAACGTGCATCTTTCCACTGAATGACTTCATGGATCGTGGCCAACATAGAACTTGGATAGGAAATCCTTTGGCCTTGGCGCTTCTGTTTCATGGAAGAACCGCATAACATGTGTCCGCTGCTTCCATACTTTAATTGTTTCTTCCAGTTCGATCTTTCCCT s panTro5.chr22 28761340 484 + 37823149 TGCCCTGACACTAAAGTGTC----------TAATCATAG---------------------------------------------------------------------GGGCTATAG-------------------------------------------------------------------------------------------------------------------AAACA--ACTACATTAAC-AAGTCGTCCAGCCTCATGCCCAATGTCACAGTTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGACATGCAAGGCTCTGAGAAAAATAATTCAAtccaatttacagcaaacaccacatttcaagaaaaggg-aaagaacaggtggtgtgtataccaaagtcccacttgctcaggcaaaaa----gaggctgcagaa-----------aattggttcatcaatggaattctatcacaaAGTGACCATTGTATAGTGAGTTTATTTGTGCTCTAAAATAGT-----ATCAACGTGCATCTTTCCACTGAATGACTTCATGGATCGTGGCCAACATAGAACTTGGATAGGAAATCCTTTGGCCTTGGCGCTTCTGTTTCATGGAAGAACCGCATAACATGTGTCCGCTGCTTCCACACTTTAATTGTTTCTTCCAGTTCGATCTTTCCCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41066416 484 + 50109623 TGCCCTGACACTAAAGTGTC----------TAATCATAG---------------------------------------------------------------------GGGCTATAG-------------------------------------------------------------------------------------------------------------------AAACA--ACTACATTAAC-AAGTCGTCCAGCCTCATGCCCAATGTCACAGTTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGACATGCAAGGCTCTGAGAAAAATAATTCAAtccaatttacagcaaacaccacatttcaagaaaaggg-aaagaacaggtggtgtgtataccaaagtcccacttgctcaggcaaaaa----gaggctgcagaa-----------aattggttcatcaatggaattctatcacaaAGTGACCATTGTATAGTGAGTTTATTTGTGCTCTAAAATAGT-----ATCAACGTGCATCTTTCCACTGAATGACTTCATGGATCGTGGCCAACATAGAACTTGGATAGGAAATCCTTTGGCCTTGGCGCTTCTGTTTCATGGAAGAACCGCATAACATGTGTCCGCTGCTTCCATACTTTAATTGTTTCTTCCAGTTCGATCTTTCCCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3038397 484 + 4464012 TGCCCTGACACTAAGGTGTC----------TAATCATAG---------------------------------------------------------------------GGGCTATAG-------------------------------------------------------------------------------------------------------------------AAACA--ACTACATTAAC-AAGTCGTCCAGCCTCATGCCCAATGTCACAGTTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGACATGCAAGGCTCTGAGAAAAATAATTCAAtccaatttacagcaaacaccacatttcaagaaaaggg-aaagaacaggtggtgtgtataccaaagtcccacttgctcaggcaaaaa----gaggctgcagaa-----------aattggttcatcaatggaattctatcacaaAGTGACCATTGTATAGTGAGTTTATTTGTGCTCTAAAATAGT-----ATCAACGTGCATCTTTCCACTGAATGACTTCATGGATCGTGGCCAACATAGAACTTGGATAGGAAATCCTTTGGCCTTGGCGCTTCTGTTTCATGGAAGAACCGCATAACATGTGTCCGCTGCTTCCATACTTTAATTGTTTCTTCCAGTTCGATCTTTCCCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106568224 482 - 115148730 TGCCCTGACACTACGCTGTC----------TAATCATAG---------------------------------------------------------------------GGGCTATAG-------------------------------------------------------------------------------------------------------------------AAACA--ACTACATTAAC-AAGTCATCCAGCCTCATGCCCAGTGTCACAGTTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGACATGCAAGGCTCTGAGAAAAATAATTCAATCCAATTTACAGCAAACACCGCATTTCAAGAAAAGGG-AAAGAACAGGTGGTGTGTATACCAAAGCCCCACTTGCTCAGGCAAAA------AGGCTGCAGAA-----------AATTGGTTCATCAATGGAATTCTATCACAAAGTGACCATCGTATAGTGAGTTTATTTGTGCTCTAAAATAGT-----ATCAACGTGCACCTTTCCACTGAATGACTTCATGGATCGTGGCCAACATAGAACTTGGATAGGAAATCCTTTGGCCTTGGCGCTTCTGTTTCATGGAAGAACCGCATAACATGTGTCCGCTGCTTCCATACTTTAATTGTTTCTTCCAGTTCAATCTTTCCCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84190898 484 + 92844088 TGCCCTGACACAAAGGTGTC----------TAATCATGG---------------------------------------------------------------------GGACTGTAG-------------------------------------------------------------------------------------------------------------------AAACT--ACTACATTAAC-AAGTTATCCAGCCTCATGGCCAGTGTCGGAGTTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGACATGCAAGGCTCTGAGAAAAAGAATTCAAtccaatttacagcaaacaccacatttcaagaaaaggg-aaagaacaggtggtgtgtataccaaagccccacttgctcaggcaaaaa----caggcttcagaa-----------aattggtttatcaatggaattctatcacaaAGTGACCATCGTATAGCGAGTTTATTTGTGCTCTAAAATAAT-----ATCAACATGAACCTTTCCACTGAGTGACTTCATGGGTCATGGCCAACATAGAACTTGGATAGGAAATCCTTTGGCCTTGGCGCTTCTGTTTCATGGAAGAACCGCATAACATGTGTCCGCTGCTTCCATACTTTAATTGTTTCTTCCAGTTCCATCTTTCCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87535744 484 - 96509753 TGCCCTGACACAAAGGTGTC----------TAATCATGG---------------------------------------------------------------------GGACTGTAG-------------------------------------------------------------------------------------------------------------------AAACT--ACTACATTAAC-AAGTTATCCAGCCTCATGGCCAGTGTCAGAGTTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGACATGCAAGGCTCTGAGAAAAAGAATTCAAtccaatttacagcaaacaccacatttcaagaaaaggg-aaagaacaggtggtgtgtataccaaagccccacttgctcaggcaaaaa----caggcttcagaa-----------aattggtttatcaatggaattctatcacaaAGTGACCATCGTATAGCGAGTTTATTTGTGCTCTAAAATAAT-----ATCAACATGAACCTTTCCACTGAGTGACTTCATGGGTCATGGCCAACATAGAACTTGGATAGGAAATCCTTTGGCCTTGGCGCTTCTGTTTCATGGAAGAACCGCATAACATGTGTCCGCTGCTTCCATACTTTAATTGTTTCTTCCAGTTCCATCTTTCCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7024352 484 - 13098629 TGCCCTGACACAAAGGTGTC----------TAATCATGG---------------------------------------------------------------------GGACTGTAG-------------------------------------------------------------------------------------------------------------------AAACT--ACTACATTAAC-AAGTTATCCAGCCTCATGCCCAGTGTCACAGTTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGACATGCAAGGCTCTGAGAAAAATAATTCAAtccaatttacagcaaacaccacatttcaagaaaaggg-aaagaacaggtggtgtgtataccaaagccccacttgctcaggcaaaaa----caggcttcagaa-----------aattggttcatcaatggaattctatcacaaAGTGACCATCGTATAGCGAGTTTATTTGTGCTCTAAAATAAT-----ATCAACATGCACCTTTCCACTGAGTGACTTCATGGGTCATGGCCAACATAGAACTTGGATAGGAAATCCTTTGGCCTTGGCGCTTCTGTTTCATGGAAGAACCGCATAACATGTGTCCGCTGCTTCCATACTTTAATTGTTTCTTCCAGTTCCATCTTTCCCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3996100 484 - 4483953 TGCCCTGACAAAAAGGTGTC----------TAATCATGG---------------------------------------------------------------------GGACTGTAG-------------------------------------------------------------------------------------------------------------------AAACT--ACTACATTAAC-AAGTTATCCAGCCTCATGCCCAGTGTCACAGTTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGACATGCAAGGCTCTGAGAAAAATAATTCAATCCAATTTACAGCAAACACCACATTTCAAGAAAAGGG-AAAGAACAGGTGGTGTGTATACCAAAGCCCCACTTGCTCAGGCAAAAA----CAGGCTTCAGAA-----------AATTGGTTCATCAATGGAATTCTATCACAAAGTGACCATCGTATAGCGAGTTTATTTGTGCTCTAAAACAAT-----ATCAACATGCACCTTTCCACTGAGTGACTTCATGGGTCATGGCCAACATAGAACTTGGATAGGAAATCCTTTGGCCTTGGCGCTTCTGTTTCATGGAAGAACCGCATAACATGTGTCCGCTGCTTCCATACTTTAATTGTTTCTTCCAGTTCCATCTTTCCCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24622486 482 + 33263144 TGCCCTGACACAAAGGTGTC----------TAATCATGG---------------------------------------------------------------------GGACTGTAC-------------------------------------------------------------------------------------------------------------------AAAAT--ACTACATTAAC-AAGTTATCCAGCCTCATGCCCAGTGT--CAGTTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGACATGCAAGGCTCTGAGAAAAATAATTCAATCCAATTTACAGCAAACACCACATTTCAAGAAAAGGG-AAAGAACAGGTGGTGTGTATACCAAAGCCCCACTTGCTCAGGCAAAAA----CAGGCTTCAGAA-----------AATTGGTTCATCAATGGAATTCTATCACAAAGTGACCATCGTATAGCGAGTTTATTTGTGCTCTAAAATAAT-----ATCAACATGCACCTTTCCACTGAGTGACTTCATGGGTCATGGCCAACATAGAACTTGGATAGGAAATCCTTTGGCCTTGGCGCTTCTGTTTCATGGAAGAACCGCATAACATGCGTCCGCTGCTTCCATACTTTAATTGTTTCTTCCAGTTCCATCTTTCCCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13893040 484 - 14338769 TGCCCTCACACAAAGGTGTC----------TAATCATGG---------------------------------------------------------------------GGACTGTAG-------------------------------------------------------------------------------------------------------------------AAACT--ACTACATTAAC-AAGTTATCCAGCCTCATGCCCAGTGTCACAGTTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGACATGCAAGGCTCTGAGAAAAATAATTCAGtccaatttacagcaaacaccacatttcaagaaaaggg-aaagaacaggtggtgtgtataccaaagccccacttgctcaggcaaaaa----caggcttcagaa-----------aattggttcatcaatggaattctatcacaaAGTGACCATCGTATAGCGAGTTTATTTGTGCTCTAAAATAAT-----ATCAACATGCACCTTTCCACTGAGTGACTTCATGGGTCATGGCCAACATAGAACTTGGATAGGAAATCCTTTGGCCTTGGCGCTTCTGTTTCATGGAAGAACCGCATAACATGTGTCCGCTGCTTCCATACTTTAATTGTTTCTTCCAGTTCCATCTTTCCCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 839626 484 + 1946073 TGCCCTGACACAAAGGTGTC----------TAATCATGG---------------------------------------------------------------------GGACTGTAG-------------------------------------------------------------------------------------------------------------------AAACT--ACTACATTAAC-AAGTTATCCAGCCTCATGCCCAGTGTCACAGTTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGACATGCAAGGTTCTGAGAAAAATAATTCAATCCAATTTACAGCAAACACCACATTTCAAGAAAAGGG-AAAGAACAGGTGGTGTGTATACCAAAACCCCACTTGCTCAGGCAAAAA----CAGGCTTCAGAA-----------CATTGGTTTATCAATGGAATTCTATCACAAAGTGACCATCATATAGTGAGTTTATTTGTGCTCTAAAATAAT-----ATCAACATGCACCTTTCCACTGAGTGACTTCATGGGTCATGGCCAACATAGAACTTGGATAGGAAATCCTTTGGCCTTGGCGCTTCTGTTTCATGGAAGAACCGCATAACATGTGTCCGCTGTTTCCATACTTTAATTGTTTCTTCCAGTTCCATCTTTCCCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1879291 484 - 2117846 TGGCCTGATACTAAGGTGTC----------TAATCATAG---------------------------------------------------------------------GGGCTGTAG-------------------------------------------------------------------------------------------------------------------AAACA--ACTACATTAAC-AAGTCATCCAGCCTCACACCCAGTGTGACAGTTTTTGAACAGATGGCCTCC--TTTCTTCCTGTTTACTGACACGCAAGGCTCTGAGAAAAAGAATTCAATCCAATTTACAGCAAACACCACATTTCCAGAAAAGGG-AAAGAACAGGTGGTGTGTATACCAAGGCCCCACTTGTTCAGGCAAAAA----GAGGCTGCAGAA-----------AATTGGTTCATCAAAGGCAGTCTATCACGAAGTGACCATCATATAATGAGTTTATTTGTTCTCTAAAATAAT-----ACGAACATGCACCTTTCCACTGCATGACTTCATGGGTCATGGCCAACATAGAACTTGGATAAGAAATCCTTTGGCCTTGGCTCTTCTGTTTCATGGAAGAACCGCATGATATGTGTCCGCTGCTTCCATACGTTAATCGTTTCTTCTAGTTCCAGCTTTCCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8799770 484 - 16357246 TGGCCTGACACTAAGGTGTC----------TAATCACAG---------------------------------------------------------------------GGGCTGTAG-------------------------------------------------------------------------------------------------------------------AAACA--ACTACATTAAC-AAGTCATCCAGCCTCACACCCAGTGTGACAGTTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGACATGCAAGGCTCTGAGAAAAAGAATTCAATCCAATTTACAGCAAACACCACATTTCAAGAAAAGAG-AAAGAACAGGTGGTGTGTATACCAAGGCCCCACTTGTTCAGGCAAAAA----GAGGCTGCAGAA-----------AATTGGTTCATCAATGGCAGTCTATCGTGAAGTGACCATCATATAGTGAGTTTATTTATTCTCCAAAATAAC-----ATGAACATGCACCTTTCCACTGCATGACTTCATGGGTCATGGCCAACATAGAACTTGGATAAGAAATCCTTTGGCCTTGGCTCTTCTGTTTCATGGAAGAACCGCATGATGTGTGTCCGCTGCTTCCATACGTTAATCGTTTCTTCCAGTTCCATCTTTCCCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1272767 484 - 1807191 TGGCCTGACACTAAGGTGTC----------TAATCATAG---------------------------------------------------------------------GGGCTGTAG-------------------------------------------------------------------------------------------------------------------AAACA--ACTACATTAAT-AAGTCATCCAGCCTCACACCCAGTGTGACAGTTTTTGAACAGATGGCCTCC--TTCCTTCCTGTTTACTGAAATGTAAGGCTCTGAGAAAAATAATTCAATCCAATTTACAGCAAACACCACATTTCAAGAAAAGGG-AAAGAACAGGTGGTGTGTATACCAAGGACCCGCTTGCTCAGGCAAAAA----GAGGCTGCAGAA-----------AATTGGTTCATCAATGGCAGTCTATCACGAAGTGACCATCGTATAGTGAGTTTATTTGTTCTCTAAAATAAC-----ATGAACATGCACCTTTCCACTGCGTGACTTCATGGGTCATGGCCAACATAGAACTTGGATAAGAAATCCTTTGGCCTTGGCTCTTCTGTTTCATGGAAGAACCGCATGATGTGTGTCCGCTGCTTCCATACGTTAATCGTTTCTTCCAGTTCCATCTTTCCCT i cebCap1.NW_016107750v1 C 0 M 885 s micMur3.chr7 5629861 483 + 108171978 TGCCCTAAAACCAAGGTGTC----------TAGTCATGA---------------------------------------------------------------------AAGCTGTGT-------------------------------------------------------------------------------------------------------------------AAACA-----CAACTAAAGAAATCATCCAGCTTCATACCCAGTGTGACAGTTTCTGAGCAGATGGCCTCATTTTCCTTCCTGTTTACCAACATGCAAGGCTCTGGGAAAGAGAATCCATTTTAATTTATAGCAAATACCATACTTCAGGAAAAGAG-AAAGAACAGGTGGTGTGTATACCAAGACCCCACTTGTTCAGGCAAAAA--ATGAGACTGCAGAA-----------AACTGGTTCACCAACAGAATTCTATCACGAAGTGACCATCGTATAATGAGTTTATCTGTGCTCTAAAATAATGAAACATCAACATACAGCTTTCC--------ACTTCATGGGTCGTGGCCAACATAGAACTTGGACAGGAAATCCTTTGGCCTTGGTGCTTCTGTTTCATGGAAGAACCTCATAACATGTGTCCGCTGCTTCCATACTTTAATCGTTTCTTCCAGTTCCATCTTTCCCT i micMur3.chr7 C 0 I 1 s proCoq1.NW_012136747v1 4990020 484 - 6317780 TGCCCTAAAACCAAGGTGTC----------TAATCGTGG---------------------------------------------------------------------AAGCTGTGG-------------------------------------------------------------------------------------------------------------------AAACA--ACTAAATTAAAGAAGTCATCCAGCCTCATAGCCAGTGTGACAGTTTCTGAGCAGATGGCCTCA--TTCCTTCCTGTTTACCGACATGCAAGGCTCTGAGAAAGAGAATCCATTTTAATTTACAGCAAATACCACACTTCAAGAAAAGGG-AAAGAACAGGTGGTGTGTATACCAAGACCCCACTTGTTCAGGCAAAAA--ATGAGACTGCAGAA-----------AACTGGTTCACCAACAGAATTCTATCATGAAGTGACCATGGTATAATGAGTTTATCTGTGCTCTAAAATAATGAAATATCAACATACACCTTTCC--------ACTTCATGGGTCGTGGCCAACATAGAACTTGGACAGGAAATCCTTTGGCCTTGGTGCTTCTGTTTCATGGAAAAACCTCATAACATGTGTCCGCTGCTTCCATACTTTAATCGTTTCTTCCAGTTCCATCTTTCCCT i proCoq1.NW_012136747v1 C 0 I 1 s otoGar3.GL873526 36243418 483 - 42659167 TGCCCTGAGACTAAGGTGTC----------CAATT-TGG---------------------------------------------------------------------AAGCTGTGG-------------------------------------------------------------------------------------------------------------------AAACATAAGTAAACTAACAAAGTCCTCTAGCCCCATATCCACTGTGACAGTTTCTGAGCAGATGGCCTCA--TTCCTTCCTGTTTACCGACAGGCAAGGCTCTAAGAAAGAGAATCCAATTTAACTTACAGCAAACATCACACTTCAAGAAAAGGGAAAAGAATAGGTGGTGTGTATACCAAGACCCCACTTGTTCAGGCAAAAA--GAGAGGCTGCAGAA-----------AACTGGTTCACTAACAAAATTCTATCATGAAGTGACCAC--TGTAAT-AGTTTATTTGTGCTCTAAAATAATGAAACATCAACAGGCGCCTTTCC--------ACCTCATGGATCATGGCCCATATAGAACTTGGACAGAAAATCCTTTGGCCTTGGTGACTCTGTTTCATGGAAGAACCTCATAATATGTGTCCGCTGCTTCCATACTTTAATTGTTTCTTCCAGTTCCATCTTTCCCT i otoGar3.GL873526 I 106 I 1 s canFam3.chr10 46038535 692 - 69331447 TGGGGTGATACCAAGCTATCCTGGGCTGTACAAACACGGCTAAGTTgaggcgcctgggtggctcagttaagtagcaaattcttgattttggctcaggtcgtgacctcagggttgtgggactgagccccatgtcaggctcagcactgggactagggcctgcttaggattctcttcctttgccctgcccccccccaccctctctctcttaaaagaaaaaaaaaaaaaaaaaaaaaGACA--GCTAAATTAACAAAGTCATCCAGCCTGATACCCAGAATGATAGTTTCTGAGCAGATGGCCTCA---TCCTTCCTGTTTACTGACATGCAAGGCTCTGAAAAAAGAG----AATCTAATTTACAGGAAACACCACACTTCAGG-AAAGGG-AAAGAACAGGTGGTGTGTATACTAAGACCCCACTTGTTCAGGCAAAAAGAGACAGACGGCAGAACAAGAACTTCCCATTGACTGAT-GATGGAATTCTATTAGGAAGTGACCATCACATACTGAGTTTATTTGTGCTCTAAAATATTTAAATATCAACATGCACCTTTCCACTGAGTGACTTCATGGGTCATGGCCCACATAGAACTTGGACAGGAAGTCCTTTGGCTTTGGCGCTTCTGTTTCATGGAAGAACCTCATGACATGTGTCCGCTGCTTCCACACGTTAATCGTTTCTTCCAGTTCCATCTTTCCCT i canFam3.chr10 C 0 C 0 a score=5406175.000000 s hg38.chr22_GL383582v2_alt 8661 493 + 162811 -GAACAGTGAGGAGAGAGGTCATCAGTCAAAGTTGTCAAgt----tgaaggcatatgacactgaaggccaggattctattctctgctc-agcatggacttgttgaatgacctt--gggcaagtaa-ctactctgtctgggc-aaagtttctatgtctggacaatg--aggtggtcagggtaaatcatttctgacacttttc--agattctttaactctgtggttAACTGGTACCAAGAGGAGA--AACATACAGGTTAACAGGCTCCTATCCCATGACTACCTAACCTGACTGGCTTAACTTATGTTTCTGCTTATCATTTCTTC--TGTTACTGACTGGTCTATGCTGAAGCTCCCATTGATGCTAACGTGACTGGCCAGGGG-GACAGAATCAGCCCCAGGATTTGAGTCCATTTATACAGGACTCATAACCACCCTAACTGCCTCTTCCAGCTGTAAACTGGCATTCAGATGAAGTGGTAACTTCTAGGGATGAGGTTCAAGAAGAGTT- s panTro5.chr22 28761824 493 + 37823149 -GAACAGTGAGGAGAGAGGTCATCAGTcaaagtggtcaagt----tgaaggcatatgacactgaaggccaggattctattctctgctc-agcatggacttgttgaatgacctt--gggcaagtaa-ctactctgtctgggc-aaagtttctatgtctggacaatg--aggtggtcagggtaaatgatttctgagacttttc--agattctttaactctgtggttAACTGGTACCAAGAGGAGA--AACATACAGGTTAACAGGCTCCTATCCCATGACTACCTAACCTGACTGGCTTAACTTATGTTTCTGCTTATCATTTCTTC--TGTTACTGACTGGTCTATGCTGAAGCACCCATTGATGCTAATGTGACTGGCCAGGGG-GACAGAATCAGCCCCAGGATTTGAGTCCATTTATACAGGACTCATAACCAGTCTAACTGCCTCTTCCAGCTGTAAACTGGCATTCAGATGAATTGGTAACTTCTAGGGATGAGGTTCAAGAAGAGTT- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41066900 493 + 50109623 -GAACAGTGAGGAGAGAGGTCATCAGTcaaagtggtcaagt----tgaaggcatatgacactgaaggccaggattctattctctgctc-agcatggacttgttgaatgacctt--gggcaagtaa-ctactctgtctgggc-aaagtttctatgtctggacaatg--aggtggtcagggtaaatgatttctgagacttttc--agattctttaactctgtggttAACTGGTACCAAGAGGAGA--AACATACAGGTTAACAGGCTCCTATCCCATGACTACCTAACCTGACTGGCTTAACTTATGTTTCTGCTTATCATTTCTTC--TGTTACTGACTGGTCTATGCTGAAGCTCCCATTGATGCTAATGTGACTGGCCAGGGG-GACAGAATCAGCCCCAGGATTTGAGTCCATTTATACAGGACTCATAACCAGTCTAACTGCCTCTTCCAGCTGTAAACTGGCATTCAGATGAAGTGGTAACTTCTAGGGATGAGGTTCAAGAAGAGTT- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3038881 494 + 4464012 -GAACAGTGAGGAGAGAGGTCATCAGTcaaagtggtcaagt----tgaaggcatatgacactgaaggccaggattctattctctgctc-agcatggac-tgttgaatgacctt--gggcaagtaa-ctactctgtctgggc-aaagtttctatgtctggacaatg--aggtggttggggtaaatgatttctgagacttttcaaagattctttaactctgtggttAACTGGTACCAAGAGGAGA--AACATACAGGTTAACAGGCTCCTATCCCATGACTACCTAACCTGACTGGCTTAACTTATGTTTCTGCGTATCATTTCTTC--TGTTACTGACTGGTGTATGCTGAAGCTCCCATTGATGCTAATGTCACTGGCCAGGGG-GACAGAATCAGCCCCAGGATTTGACTCCATTTATACAGGACTCATAACCAGCCTAACTGCCTCTTCCAGCTGTAAACTGGCATTCAGATGAAGTGGTAACTTCTAGGGATGAGGTTCAAGAAGAGTT- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106568706 495 - 115148730 -GAACAGTGAGGAGAGAGGTCATCAGTcaaagtggtcaagt----tgaaggcatatgacactgaaggccaggattctattctctgctc-agcatggacttgttgaatgacctt--gggcaagtaa-ctactctgtctgggc-aaagtttctatgtctggacaatg--aggtggttggggtaaatgatttctgagacctttcaaagattctttaactctgtggttAGTTGGTACCAGGAGGAGA--AACATATAGGTTAACAGGCTCCTATCCCATGACTACCTAACCTGACTGGCTTAACTTATGTTTCTGCTTATCATTTCTTC--TGTTACTGACTGGTCTATGCTAAAGCTCCCATTGATGCTAATGTGACTGGCCAGGGG-GACAGAATCAGCCCTAGGATTTGACCCCATTTATACAGGACTCATAACCAGCCTAACTGCCTCTTCCAGCTGTAAACTGGCATTCAGATGAAGTGGTAACTTCTAGGGATGAGGTTCAAGAAGAGTT- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84191382 490 + 92844088 -GAACAGTGAGGAGAGAGGTCGTCAGTcacagtggtcaagt----tgaaggcatatgacactgaaggccaggattctattctctgctc-agcatggacttgttgaatgacctt--gggcaagtta-ctactctgtctgggc-aaagtttctatgtctggacaatg--agatggttggggtaaatgatttctgagacctttcaaagattctttaactctgtggttAACTGGTACCAAGAGGAGA--AACATATAGGTTAACAGGCTCTTATCCCATGACCACCTAACCTGACTGG-----CTTATGTTTCTGCTTATCATTTCTTC--TGTTACTGACTGGTCTATGCTGAAGCTCCCATTGATGCTAATGTGACTGGCCAGGGG-GACAGAATCAGCCCCAGGATTTGACCCCATTTATACAGGACTCATAACCAGCCTAACTGCCTCTTCCAGCTGTAAACTGGCATTCAGGTGAAGTGGTAACTTCTAGGGATGAGGTTCAAGAAGAATT- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87536228 490 - 96509753 -GAACAGTGAGGAGAGAGGTCGTCAGTCACAgtggtcaagt----tgaaggcatatgacactgaaggccaggattctattctctgctc-agcatggacttgttgaatgacctt--gggcaagtta-ctactctgtctgggc-aaagtttctatgtctggacaatg--agatggttggggtaaatgatttctgagacctttcaaagattctttaactctgtggttAACTGGTACCAAGAGGAGA--AACATATAGGTTAACAGGCTCTTATCCCATGACCACCTAACCTGACTGG-----CTTATGTTTCTGCTTATCATTTCTTC--TGTTACTGACTGGTCTATGCTGAAGCTCCCATTGATGCTAATGTGACTGGCCAGGGG-GACAGAATCAGCCCCAGGATTTGACCCCATTTATACAGGACTCATAACCAGCCTAACTGCCTCTTCCAGCTGTAAACTGGCATTCAGGTGAAGTGGTAACTTCTAGGGATGAGGTTCAAGAAGAATT- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7024836 488 - 13098629 -GAACAGTGAGGAGAGAGGTCGTCAGTcacagtggtcaagt----tgaaggcatatgacactgaaggccaggattctattctctgctc-agcatggacttgttgaatgacctt--gggcaagtta-ctactctgtctgggc---agtttctatgtctggacaatg--agatggttggggtaaatgatttctgagacctttcaaagattctttaactctgtggttAACTGGTACCAAGAGGAGA--AACATATAGGTTAACAGGCTCTTATCCCATGACCACCTAACCTGACTGG-----CTTATGTTTCTGCTTATCATTTCTTC--TGTTACTGACTGGTCTATGCTGAAGCTCCCATTGATGCTAATGTGACTGGCCAGGGG-GACAGAATCAGCCCCAGGATTTGACCCCATTTATACAGGACTCATAACCAGCCTAACTGCCTCTTCCAGCTGTAAACTGGCATTCAGGTGAAGTGGTAACTTCTAGGGATGAGGTTCAAGAAGAATT- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3996584 489 - 4483953 -GAACAGCGAGGAGAGAGGTCGTCAGTcacagtggtcaagt----tgaaggcatatgacactgaaggccaggattctattctctgctc-agcatggacttgttgaatgacctt--gggcaagtaa-ctactctgtctgggc-aaagtttctatgtctggacaatg--agatggttggggtaaatgatttctgagacgtttcagagattctttaactctgtggttAACTGGTACCAAGAGGAGA--AACATATAGGTTAACAGGCTCTTATCCCATGACCACCTAACCTGACTGG-----CTTATGTTTCTGCTTATCATTTCTTC--TGTTACTGACTGGTCTATGCTGAAGCTCCCATTGATGCTAATGTGACTGGCCAGGGG-GACAGAATCAGCCCCAGGATTTGACCCCATTTATACAGGACTCATAATCAGCCTAACTGCCTCTTCCAGCTGTAAACTGGCATTCAGATGAAGTGGTAACTTCTAGGG-TGAGGTTCAAGAAGAATT- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24622968 490 + 33263144 -GAACAGCGAGGAGAGAGGTCGTCAGTCACAgtggtcaagt----tgaaggcatatgacactgaaggccaggattctattctctgctc-agcatggacttgttgaatgacctt--cggcaagtaa-ctactctgtctgggc-aaagtttctatgtctggacaatg--agatggttggggtaaatgatttctgagacctttcaaagattctttaactctgtggttAACTGGTACCAAGAGGAGA--AACATATAGGTTAACAGGCTCTTATCCCATGACCACCTAACTTGACTGG-----CTTATGTTTCTGTTTATCATTTCTTC--TGTTACTGACTGGTCTATGCTGAAGCTCCCATTGATGCTAATGTGACTGGCCAGGGG-GACAGAATCAGCCCCAGGATTTGACCCCATTTATACAGGACTCATAACCAGCCTAACTGCCTCTTCCAGCTGTAAACTGGCATTCAGATGAAGTGGTAACTTCTAGGGATGAGGTTCAAGAAGAATT- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13893524 490 - 14338769 -GAACAGCGAGGAGAGAGGTCGTCAGTcacagtggtcaagt----tgaaggcatatgacactgaaggccaggattctattctctgctc-agcatggacttgttgaatgacctt--gggcaagtaa-ctactctgtctgggc-aaagtttctatgtctggacaatg--agatggttggggtaaatgatttctgagacctttcagagattctttaactctgtggttAACTGGTACCAAGAGGAGA--AACATATAGGTTAACAGGCTCTTATCCCATGACCACCTAACCTGACTGG-----CTTATGTTTCTGCTTATAATTTCTTC--TGTTACTGACTGGTCTATGCTGAAGCTCCCATTGATGCTAATGTGACTGGCCAGGGG-GACAGAATCAGCCCCAGGATTTGACCCCATTTATACAGGACTCATAATCAGCCTAACTGGCTCTTCCAGCTGTAAACTGACATTCAGATGAAGTGGTAACTTCTAGGGATGAGGTTCAAGAAGAATT- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 840110 490 + 1946073 -GAACAGTGAGGAGACAGGTCATCAGTcacagtggtcaagt----tgaaggcatatgacactgaaggccaggattctattctttgctc-agcatggacttgttgaatgacctt--gggcaagtaa-ctactctgtctgggc-aaagtttctatgtctgcacaatg--agatggttggggtaaatgatttctgagacctttcaaagattctttacctctgtggttAACTGGTACCATGAGGAGA--AACATACAGGTTAACAGGCTCTTATCCCATGACCACCTAACCTGACTGG-----CTTATGTTTCTGCTTATCATTTCTTC--TGTTACTGACTGGTCTATGCTGAAGCTCCCATTGATGCTAATGTGACTGGCCAGGGG-GACAGAATCAACCACAGGATTTGACCCCATTTATACAGGACTCATAACCAGCCTAACTGCCTCTTCCAGCTGTAAACTGGCATTCAGATGAAGTGGTAACTTCTAGGGATGAGGTTCAAGAAGAATT- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1879775 477 - 2117846 -GAAGAGTGAGGAAAGAGGTCATCAGTCAAAGTGGTCAAG--------------------TTgaaggccaggattctattcactgttc-agcctggacttgatgagtgacctt--gagcaagtaa-ctactctgtctgggc-aaagttcctatgtctggacaatg--aggtggtggggctaaattctttctgagacctttcaaagattctttaactctgtggttAACTGGTACCAGGAGGAGA--AACTTAGAGGTTAACAGGTTCCTATCCCATGACTACCTAACCTGACTGGCTTAACTTATGCTTCTGCTTATCATTTCTTC--TGTTACTGAATGGTTCATGCTGAAACTCCCATTGATGCTAATATGACTGGCCAGGGG-GACAGAATCAGCCCCAGGATTTAACCCAATTTATACAGGACGCAT-ACCAGCC-AACTGCCTCCTCCAGCTGTAAGCTGGCATCCAGAGGAAGTGGTAACTTCCAGGGATGAGGTTCAAGAAGAGTT- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8800254 492 - 16357246 -GAAGAGTGAGGAAAGAGGTCATCAGTcaaagtggtcaagc----tgaaggcatatgacactgaaggccaggattctattctctgttc-agcatggacttgttgagtgacctt--gggcaagtaa-ctactctgtctgggc-aaagttcctatctctggacaatg--aggtggttgggctaaattctttctgagaccttttaaagattctttaactccgtggttAACTGGTACCAAGAGGAGA--AAC--ATAGGTTAACAGGCTCCTATCCCATGACTACCTAACCTAACTGGCTTAACTTATGCTTCTGCTTATCATTTCTTC--TGTTACCGACTGGTTCATGCTGAAGCTCCTATGGATGCTAATGTGACTGGCCAGGCG-GACAGAATCAGCCCCAGGATTTGACCCAATTTATACAGGACGCATAACCAGCC-AACTGCCTCCTCCAGCTGTAAGCTGGCATCTAGAGGAAGTGGTAACTTCCAGGGATGAGGTTCAAGAAGAGTT- i saiBol1.JH378157 C 0 C 0 s micMur3.chr7 5630345 493 + 108171978 -CAAAAGTAAGGGTG-AGGTTGTCAGTCAAAGCGGTCAAGCCAGTTAAAAGCATACTACCCTgaaggccacgattctattctctgctc-agcaccggcttgatgaat-gtctt--gggcaaggaa-ttactctgtctagac-aacatttctgcacctggacaata--aggtggttggcctaaatgatctctgagacctttcaaatattatttaactc---tgtTAACTAGTCCAAAGAGGAGA--GACTTCTAGGTTAACAGGCCCCTATCTTATGACTGCCTAACCTGACTGGCTTAACTTATGTTTCTGCTTAACATTTTCTCCAGGTTATTTACTGGTCCATGCTGAAACTCCCAT-GCTGCTAATATGACTGGCCAGGGA-GACACAATCAGACCCAAGAGTTGGCCCCATTTACACAGGACTCA--GGCAACCTAACTGCCTCTTCCAGCTATAAGCTGGGATCCAAGTGAAGCTGTAACCTCCAGGGATGAGGTTCAAGAAGAGTT- i micMur3.chr7 I 1 I 41 s proCoq1.NW_012136747v1 4990505 491 - 6317780 -CAAAAGTAAGGGGG-AGGTTGTCAGTCAAGGCGGTCAAGTCAGTCGAAGGCATGCTACATTgaaggccacgattctattctctgctc-agcactggcttgatgaatggtctt--gggcaaggaa-ttactctgtctagac-aacattt------ctggatgata--aagtggttgggctaaatgatctctgagacctttcaaatattctttaactctgtTGTTAACTAGTCCAAAGAGGAGA--GACTTCTAGGTTAACAGGTCCCTATCCCATGACTGCCTAACCTGACTGGCTTAACTTATGTTTCTGCTTAACATTTTCTCCATGTTATTTACTGGTCTGCGCTGAAACTCCCAT-GATGCTAATATGACTGGCCAGGGA-GACATAATCAGACCCAAGAGTTGGCCCCATTTACACAGGACTCA--GCCAACGTAACTGCCTCTTCCAGCTATAAGCTGGGATCCAAGTGAAGCTATAACCTCCAGGGATGAGGTTCAAGAAGAGTT- i proCoq1.NW_012136747v1 I 1 C 0 s otoGar3.GL873526 36243902 479 - 42659167 -CAAAAGTAAGGGGATGGGTTGTCAGTCAAAGTGGCCAAGTCAG----------ACTACACTAAAGGCCACCATTCTATTCTCTG----------GCcttgatgaataatctt--gggcaagaaa-ttactctgtctagac-aacgttcctacacctggacagtgataggtgattggactaagtgatctctgagacctttcaaaaattctttaatcctgttgttAACTTGCCTAAAGAGGAGACTGACTTCTTAGTTAACAGGCCCCTATTCCATGACTGCCTAATCTAACAGGCTTAAC----ATTTCTCTTTAACATTTTTTCCATGTTATTTACTGGTCCATGCTGAAGCTCCCAC-GATGCTAATATGACTAGCCAGGAA-GACATGATCAGACCTATGATTTGGCCCCATTTGCAGAGCACTTA--GCCAACCTAACTGTCTCTTCCAGCTATTAGCTGGCATCCAGGTGAGGCTATAACCTCCAGGGATGAGGTTCAAGGAGAGTT- i otoGar3.GL873526 I 1 C 0 s canFam3.chr10 46039227 479 - 69331447 GTACAGGTGAGGGGAGAGGTGTTCCGTcagggtggctgagg----ggaaggaatacgacac----agccaggattttgtgctctgctctggcactgactagctgagtgaccttgggggcaagtaacctcctctctcaggaccacagtttctgcatctggtaaatg--aggtggttgggctaaccgatctctcagtcctttcaaatattctctaactctGGAGCTCACTGATTCCAAGAGGAGA--GACTTCCAGGTCAGCAGGCCCCAGCCCCATGACTGCC-----TTACTGGCTTAACTTGGGTTTCTGCCAAACATTCCTTCCACGGTATGTACCAGCCCATGCTAAAGTTCACACTGATGCTAACGTGACTGACCAGAGATGACCGAATCAGGCCCGGGATCTGACCCCATTTACACAGGACTCA--GCTAACCAGTCTGCCTCTTCCAGCTA---------------GTGAAGTCGTACCTTCCAGAAATGAGGTTCAGGAAGAGTTT i canFam3.chr10 C 0 C 0 e cebCap1.NW_016107750v1 1273251 885 - 1807191 M a score=219153.000000 s hg38.chr22_GL383582v2_alt 9154 29 + 162811 CAAACTTTCCTCCC-TATATC-------TTTTTTTAT s panTro5.chr22 28762317 29 + 37823149 CAAACTTTCCTCCC-TATATC-------TTTTTTTAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41067393 29 + 50109623 CAAACTTTCCTCCC-TATATC-------TTTTTTTAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3039375 29 + 4464012 CAAACTTTCCTCCC-TATATC-------TTTTTTTAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569201 29 - 115148730 CAAACTTTCCTCCC-TATATC-------TTTTTTTAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84191872 33 + 92844088 CAAACTTTCCTCCC-TACATC---TTTTTTTTTTTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87536718 33 - 96509753 CAAACTTTCCTCCC-TACATC---TTTTTTTTTTTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025324 33 - 13098629 CAAACTTTCCTCCC-TACATC---TTTTTTTTTTTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997073 32 - 4483953 CAAACTTTCCTCCC-TATATC----TTTTTTTTTTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24623458 36 + 33263144 CAAACTTTCCTCCC-TATATCTTTTTTTTTTTTTTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894014 32 - 14338769 CAAACTTTCCTCCC-TATATC----TTTTTTTTTTTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 840600 30 + 1946073 CAAACTTTCCTCCA-AAAACC------TTTTTTTTTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1880252 27 - 2117846 CAAACTTTCCTCCC-TATATC---------TTTTTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8800746 28 - 16357246 CAAACTTTCCTCCCTTTTGTC---------TTTTTTT i saiBol1.JH378157 C 0 C 0 s proCoq1.NW_012136747v1 4990996 27 - 6317780 CAAACTTTCCTCCC-TGTATC---------TTCTTTT i proCoq1.NW_012136747v1 C 0 I 1 s otoGar3.GL873526 36244381 27 - 42659167 CATGCATTCCTCCC-tatata---------tatatat i otoGar3.GL873526 C 0 I 706 s canFam3.chr10 46039706 26 - 69331447 CAAACTTTCCTCCT-CAAATC-------TTTTTT--- i canFam3.chr10 C 0 C 0 e micMur3.chr7 5630838 41 + 108171978 I e cebCap1.NW_016107750v1 1273251 885 - 1807191 M a score=212418.000000 s hg38.chr22_GL383582v2_alt 9183 22 + 162811 GGTTATAAAATGCAAGTCCCAG s panTro5.chr22 28762346 22 + 37823149 GGTTATAAAATGCAAGTCCCAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41067422 22 + 50109623 GGTTATAAAATGCAAGTCCCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3039404 22 + 4464012 GGTTATAAAATGCAAGTCCCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569230 22 - 115148730 GGTTATAAAATGCAAGTCCCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84191905 22 + 92844088 GGTTATAAAATGCAAGTCCCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87536751 22 - 96509753 GGTTATAAAATGCAAGTCCCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025357 22 - 13098629 GGTTATAAAATGCAAGTCCCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997105 22 - 4483953 GGTTATAAAATGCAAGTCCCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24623494 22 + 33263144 GGTTATAAAATGCAAGTCCCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894046 22 - 14338769 GGTTATAAAATGCAAGTCCCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 840630 22 + 1946073 GGTTATAAAATGCAAGTCCCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1880279 22 - 2117846 GGTTATAAAATGCAAGCCCCAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8800774 22 - 16357246 GGTTATAAAATGCAAGCCCCAG i saiBol1.JH378157 C 0 C 0 s proCoq1.NW_012136747v1 4991024 20 - 6317780 -GTTATAAAATGCAAGCCTTA- i proCoq1.NW_012136747v1 I 1 C 0 s canFam3.chr10 46039732 17 - 69331447 -----AAAAATGTAAGCCCCAG i canFam3.chr10 C 0 I 1189 e otoGar3.GL873526 36244408 706 - 42659167 I e micMur3.chr7 5630838 41 + 108171978 I e cebCap1.NW_016107750v1 1273251 885 - 1807191 M a score=47971.000000 s hg38.chr22_GL383582v2_alt 9205 5 + 162811 TGGAT s panTro5.chr22 28762368 5 + 37823149 TGGAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41067444 5 + 50109623 TGGAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3039426 5 + 4464012 TGGAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569252 5 - 115148730 TGGAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84191927 5 + 92844088 TGGAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87536773 5 - 96509753 TGGAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025379 5 - 13098629 TGGAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997127 5 - 4483953 TGGAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24623516 5 + 33263144 TGGAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894068 5 - 14338769 TGGAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 840652 5 + 1946073 TGGAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1880301 5 - 2117846 TGGAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8800796 5 - 16357246 TGGAT i saiBol1.JH378157 C 0 C 0 s proCoq1.NW_012136747v1 4991044 4 - 6317780 -GGAT i proCoq1.NW_012136747v1 C 0 C 0 e canFam3.chr10 46039749 1189 - 69331447 I e otoGar3.GL873526 36244408 706 - 42659167 I e micMur3.chr7 5630838 41 + 108171978 I e cebCap1.NW_016107750v1 1273251 885 - 1807191 M a score=160318.000000 s hg38.chr22_GL383582v2_alt 9210 18 + 162811 GTTCCCTTGATGAATCTT s panTro5.chr22 28762373 18 + 37823149 GTTCCCTTGATGAATCTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41067449 18 + 50109623 GTTCCCTTGATGAATCTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3039431 18 + 4464012 GTTCCCTTGATGAATCTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569257 18 - 115148730 ATTCCCTTGATGAATCTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84191932 18 + 92844088 GTTGCCTTGATGAATCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87536778 18 - 96509753 GTTGCCTTGATGAATCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025384 18 - 13098629 GTTGCCTTGATGAATCTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997132 18 - 4483953 GTTGCCTTGATGAATCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24623521 18 + 33263144 GTTGCCTTGATGAATCTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894073 18 - 14338769 GTTGCCTTGATGAATCTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 840657 18 + 1946073 GTTGCCTTGATGAATCTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1880306 18 - 2117846 GTTCCCTTGATCAATCTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8800801 18 - 16357246 GTTCCCTTGATCAATCTT i saiBol1.JH378157 C 0 C 0 s proCoq1.NW_012136747v1 4991048 18 - 6317780 TTTCCCTTGAACAATCTC i proCoq1.NW_012136747v1 C 0 I 3 s otoGar3.GL873526 36245114 18 - 42659167 gccCCCTTGACCAATGTT i otoGar3.GL873526 I 706 I 3 e canFam3.chr10 46039749 1189 - 69331447 I e micMur3.chr7 5630838 41 + 108171978 I e cebCap1.NW_016107750v1 1273251 885 - 1807191 M a score=45496.000000 s hg38.chr22_GL383582v2_alt 9228 4 + 162811 ATCT s panTro5.chr22 28762391 4 + 37823149 ATCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41067467 4 + 50109623 ATCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3039449 4 + 4464012 ATCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569275 4 - 115148730 ATCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84191950 4 + 92844088 ATCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87536796 4 - 96509753 ATCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025402 4 - 13098629 ATCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997150 4 - 4483953 ATCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24623539 4 + 33263144 ATCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894091 4 - 14338769 ATCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 840675 4 + 1946073 ATCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1880324 4 - 2117846 ACCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8800819 4 - 16357246 ATCT i saiBol1.JH378157 C 0 C 0 s micMur3.chr7 5630879 4 + 108171978 ATCT i micMur3.chr7 I 41 C 0 s proCoq1.NW_012136747v1 4991069 4 - 6317780 ATCG i proCoq1.NW_012136747v1 I 3 C 0 s otoGar3.GL873526 36245135 4 - 42659167 ATCT i otoGar3.GL873526 I 3 C 0 e canFam3.chr10 46039749 1189 - 69331447 I e cebCap1.NW_016107750v1 1273251 885 - 1807191 M a score=291417.000000 s hg38.chr22_GL383582v2_alt 9232 27 + 162811 ATTTAA-CCAGATGATAACC-----TCCAAGTT s panTro5.chr22 28762395 27 + 37823149 ATTTAA-CCAGAAGATAACC-----TCCAAGTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41067471 27 + 50109623 ATTTAA-CCAGAAGATAACC-----TCCAAGTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3039453 27 + 4464012 ATTTAA-CCAGATGATAACC-----TCCAAGTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569279 27 - 115148730 ATTTAA-CCAGATGATAACC-----TCCAAGTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84191954 27 + 92844088 ATTTAT-CCAGATGATAACC-----TCCAAGTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87536800 27 - 96509753 ATTTAT-CCAGATGATAACC-----TCCAAGTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025406 27 - 13098629 ATTTAT-CCAGATGATAACC-----TCCAAGTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997154 27 - 4483953 ATTTAT-CCAGATGATAACC-----TCCAAGTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24623543 27 + 33263144 GTTTAT-CCAGATGATAACC-----TCCAAGTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894095 27 - 14338769 ATTTAT-CCAGATGATAACC-----TCCAAGTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 840679 26 + 1946073 ATTTAT-CCAGATGATAACC-----TCCAA-TT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1880328 27 - 2117846 ATTTAA-CCAGGTGATAATC-----TCCAAGTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8800823 28 - 16357246 ATTTAAGCCAGGTGATAATC-----TCCAAGTT i saiBol1.JH378157 C 0 C 0 s micMur3.chr7 5630883 27 + 108171978 ATTTAA-CCAGGTGACAACC-----TCCAAGTT i micMur3.chr7 C 0 I 121 s proCoq1.NW_012136747v1 4991073 27 - 6317780 ATTTAA-CCAGGTGATAACC-----TCCAAGTT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36245139 27 - 42659167 ATTTAA-CCAGGTAGTAACT-----TCCAAGTT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46040938 32 - 69331447 actcaa-ccagagagccaccaggcaccccCGTT i canFam3.chr10 I 1189 C 0 e cebCap1.NW_016107750v1 1273251 885 - 1807191 M a score=545444.000000 s hg38.chr22_GL383582v2_alt 9259 54 + 162811 CAAGTATTTCTCTGAA-ACACAGCAATAATCACTGCCGAACCAGTAGCTGCTTTC s panTro5.chr22 28762422 54 + 37823149 CAAGTATTTCTCTGAA-ACACAGCAATAATCACTGCCGAACCAGTAGCTGCTTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41067498 54 + 50109623 CAAGTATTTCTCTGAA-ACACAGCAATAATCACTGCCGAACCAGTAGCTGCTTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3039480 54 + 4464012 CAAGTATTTCTCTGAA-ACACAGCAATAATCACTGCCGAACCAGTAGCTGCTTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569306 54 - 115148730 CAAGTATTTCTCTGAA-ACACAGCAATAATCACTGCTGAACCAGTAGCTGCTTTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84191981 54 + 92844088 CAAGTATTTCTCTGAA-ATACAGCAATAATCACTGCTGAACCAGTAGCTGCTTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87536827 54 - 96509753 CAAGTATTTCTCTGAA-ATACAGCAATAATCACTGCTGAACCAGTAGCTGCTTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025433 54 - 13098629 CAAGTACTTCTCTGAA-ATACAGCAATAATCACTGCTGAACCAGTAGCTGCTTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997181 54 - 4483953 CAAGTATTTCTCTGAA-ATACAGCAATAATCACTGCTGAACCAGTAGCTGCTTTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24623570 54 + 33263144 CAAGTATTTCTCTGAA-ATACAGCAATAATCACTGCTGAACCAGTAGCTGCTTTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894122 54 - 14338769 CAAGTATTTCTCTGAA-ATACAGCAATAATCACTGCTGAACCAGTAGCTGCTTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 840705 54 + 1946073 CAAGTATTTCTCTGAA-ATACAGCAATAATCACTGCTGAACCAGTAGCTGCTTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1880355 54 - 2117846 CAACCATTTCTCTGAA-ACACAGCAATAATCACTGCTGAACCAGTAACTGCTTTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8800851 54 - 16357246 CAACTATTTCTCTGAA-ACACAGCAATAATCACTGCTGAACCAGTAACTGCTTTC i saiBol1.JH378157 C 0 C 0 s proCoq1.NW_012136747v1 4991100 52 - 6317780 -AACTACTCCTTTGAA-ACACAG-AGCAATAGTTGCTGAGCCAGTAGTTGCTTTT i proCoq1.NW_012136747v1 C 0 I 76 s otoGar3.GL873526 36245166 52 - 42659167 -AACTACTGCTCTGAA-ACACAG-AGCAACAGTTGCTGAACCAATAGTTGCTTTT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46040970 53 - 69331447 CGTATGTTTCTCTGAACACTAAGCAATAGTTA--ACTGACTCGGTAGTTGCTTTT i canFam3.chr10 C 0 C 0 e micMur3.chr7 5630910 121 + 108171978 I e cebCap1.NW_016107750v1 1273251 885 - 1807191 M a score=1203880.000000 s hg38.chr22_GL383582v2_alt 9313 111 + 162811 TAA--ACTT-GGAGACAAAATGTTCATTTGGAAAGACTAAGAAGTAGTGGACAAGTTGGCTGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA s panTro5.chr22 28762476 111 + 37823149 TAA--ACTC-GGAGACAAAATGTTCATTTGGAAAGACTAAGAAGTAGTGGACAAGTTGGCTGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41067552 111 + 50109623 TAA--ACTC-GGAGACAAAATGTTCATTTGGAAAGACTAAGAAGTAGTGGACAAGTTGGCTGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3039534 111 + 4464012 TAA--ACTT-GGAGACAAAATGTTCATTTGGAAAGACTAAGAAGTAGTGGACAAGTTGGCTGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569360 111 - 115148730 TAA--ACTT-GGAGACAAAATGTTCATTTGGAAAGACTGAGAAGTAGTGGACAAGTTGGCTGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84192035 110 + 92844088 TAA--ACTT-GGAGACAAAATGTTCATTTGGAAAGACTGAGAAGTAGTGAACAAGTTGG-TGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87536881 110 - 96509753 TAA--ACTT-GGAGACAAAATGTTCATTTGGAAAGACTGAGAAGTAGTGAACAAGTTGG-TGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025487 110 - 13098629 TAA--ACTT-GGAGACAAAATGTTCATTTGGAAAGACTGAGAAGTAGTGAACAAGTTGG-TGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997235 110 - 4483953 TAA--ACTT-GGAGACAAAATGTTCATTTGGAAAGACTGAGAAGTAGTGAACAAGTTGG-TGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24623624 110 + 33263144 TAA--ACTT-GGAGACAAAATGTTCATTTGCAAAGACTGAGAAGTAGTGAACAAGTTGG-TGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894176 108 - 14338769 TAA--ACTT-GGAGAC--AGTGTTCATTTGGAAAGACTGAGAAGTAGTGAACAAGTTGG-TGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 840759 111 + 1946073 TAA--ACTT-GGAGACAAAATGTTCATTTGGAAAGACTGAGAAGTAATGAACAAGTTGGCTGATCTTTTAAATTGGTCAGGGTGGGTCAGTTACCTTAATGACCAGAAGATCAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1880409 109 - 2117846 TAA--ACTT-GGAGACAAAATGTTCATTTGGAAAGACTAGT--TTTGCGGACTAGTTGGCCGATCTTTTAAACTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8800905 111 - 16357246 TAAACACCT-GGAGACAAAATGTTCATTTGGAAAGACTAGT--TTTGCAGACTAGTTGGCTGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA i saiBol1.JH378157 C 0 C 0 s micMur3.chr7 5631031 109 + 108171978 taa--aCTT-GGAGACAAAATGTTCATCTGGGAAGAC--AGGAGCACTATACAAGTTGGTTGATCTTTTAAATTGGTCAGCGAAGGTCAGTTACCTTAATGACCAGAAGATCAA i micMur3.chr7 I 121 C 0 s proCoq1.NW_012136747v1 4991228 111 - 6317780 taa--aCTT-GGAGACAAAATATTCAGCTGGGAAGACTGAGAAGCACTAGACAAGTTGGCTGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAA i proCoq1.NW_012136747v1 I 76 C 0 s otoGar3.GL873526 36245218 74 - 42659167 TAA--ACTT-GGAGACAAGA------------------------------------TGGCCGATCTTTTAACTTGTTTAA-AAGGATCAGTTACCTTAATGACCAGGAGATCAA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46041023 94 - 69331447 TAA--ACTTGGGAGACAAAA----------------CTGAGATGCTCTGGACAAGCTGGCTGCTCTTTCAAGTCA--CAGGGAAGGTTAGTTACCTTAATGACCAGAAGATCCA i canFam3.chr10 C 0 C 0 e cebCap1.NW_016107750v1 1273251 885 - 1807191 M a score=1881870.000000 s hg38.chr22_GL383582v2_alt 9424 128 + 162811 CCACCCTGGGGTCTGTGACATGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGCACTAGAGAGAAAAACATGACTCAGGGTAGAAAT s panTro5.chr22 28762587 128 + 37823149 CCACCCTGGGGTCTGTGACATGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCTTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGCACTAGAGAGAAAAACATGACTCAGGGTAGAAAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41067663 128 + 50109623 CCACCCTGGGGTCTGTGACATGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCTTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGCACTAGAGAGAAAAACATGACTCAGGGTAGAAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3039645 128 + 4464012 CCACCCTGGGGTCTGTGACATGGGCATTCTTCATAAACATCTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAACTGGTGCACTAGAGAGAAAAACATGACTCAGGGTAGAAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569471 128 - 115148730 CCACCCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGCACTAGAGAGAAAAACATGACTCAGGGTAGAAAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84192145 128 + 92844088 CCACCCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGTACTAGAGAGAAAAACATGACTCAGGGTAGAAAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87536991 128 - 96509753 CCACCCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGTACTAGAGAGAAAAACATGACTCAGGGTAGAAAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025597 128 - 13098629 CCACCCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGTACTAGAGAGAAAAACATGACTCAGGGTAGAAAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997345 128 - 4483953 CCACCCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGTACTAGAGAGAAAAACATTACTCAGGGTAGAAAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24623734 128 + 33263144 CCACCCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGTACTAGAGAGAAAAACATGACTCAGGGTAGAAAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894284 128 - 14338769 CCACCCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGTACTAGAGAGAAAAACATTACTCAGGGTAGAAAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 840870 128 + 1946073 CCACCCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGTACTAGAGAGAAAAACATGACTCAGGGTAGAAAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1880518 128 - 2117846 CCACTCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCTGACTTTATCTCGTCCCTGTTTCACAGTGATGTCCAGCTGGAATTGGTGCACTAGAGAGAAAAACATGATTCAGGGTAGAAAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8801016 128 - 16357246 CCACTCTGGGGTCTGTGACATGGGCATTCTTCATAAACATTTCTCTGACTTTATCTCGTCCCTTTTTCACAGTGATGTCCAGCTGGAATTGGTGCACTAGAGAGAAAAACATGATTCAGGGTAGAAAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1274136 128 - 1807191 CCACTCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCTGACTTTATCTCGTCCCTGTTTCACAGTGATGTCCAGCTGGAATTGGTGCACTAGAGAGAAAAACATGATTCAGGGTAGAAAT i cebCap1.NW_016107750v1 M 885 C 0 s micMur3.chr7 5631140 128 + 108171978 CCACTCTGGGGTCTGTGACATGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCTGTTTCACAGTGATGTCTAGCTGGAATAAATGCACTAGAAAGAAAAACATGATTCAGGGTAGAAAT i micMur3.chr7 C 0 I 4379 s proCoq1.NW_012136747v1 4991339 128 - 6317780 CCACTCTGGGGTCTGTGACATGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCTGTTTCACAGTGATGTCTAGCTGGAATAAATGCACTAGAAAGAAAAACAAGATTCAGGGTAGCAAT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36245292 128 - 42659167 CCACCCTGGGGTCTGTGACATGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCTGTTTCACAGTAATGTCTAGCTGGAACAAGTGCACTAGAGAGAAAAACATGATCCGAGACAGAAAT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46041117 127 - 69331447 CCACCCTGGGGTCTGTGACGTGGGAATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCTTGCTTCACAGTGATGTCTAGCTGGAATAAGTGCACTAAAGAG-AAAACACGATTCAGAGTAGAAAT i canFam3.chr10 C 0 C 0 a score=104301.000000 s hg38.chr22_GL383582v2_alt 9552 9 + 162811 TGTATGGTT s panTro5.chr22 28762715 9 + 37823149 TGTATGGTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41067791 9 + 50109623 TGTATGGTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3039773 9 + 4464012 TGTATGGTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569599 9 - 115148730 TGTATGGTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84192273 9 + 92844088 TGTATGGTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87537119 9 - 96509753 TGTATGGTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025725 9 - 13098629 TGTATGGTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997473 9 - 4483953 TGTATGGTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24623862 9 + 33263144 TGTATGGTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894412 9 - 14338769 TGTATGGTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 840998 9 + 1946073 TGTATGGTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1880646 9 - 2117846 TATACGGTT i calJac3.chrUn_GL286373 C 0 I 322 s saiBol1.JH378157 8801144 9 - 16357246 TGTACGGTT i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1274264 9 - 1807191 TGTACGGCT i cebCap1.NW_016107750v1 C 0 I 1 s proCoq1.NW_012136747v1 4991467 9 - 6317780 TATAAGGTT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36245420 9 - 42659167 CATAAGGTT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46041244 9 - 69331447 TATGTGGTT i canFam3.chr10 C 0 C 0 e micMur3.chr7 5631268 4379 + 108171978 I a score=9555.000000 s hg38.chr22_GL383582v2_alt 9561 1 + 162811 A s panTro5.chr22 28762724 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41067800 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3039782 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569608 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84192282 1 + 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87537128 1 - 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025734 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997482 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24623871 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894421 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 841007 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s proCoq1.NW_012136747v1 4991476 1 - 6317780 A i proCoq1.NW_012136747v1 C 0 I 5715 s otoGar3.GL873526 36245429 1 - 42659167 A i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46041253 1 - 69331447 A i canFam3.chr10 C 0 C 0 e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274273 1 - 1807191 I e saiBol1.JH378157 8801153 1 - 16357246 I e calJac3.chrUn_GL286373 1880655 322 - 2117846 I a score=1775690.000000 s hg38.chr22_GL383582v2_alt 9562 190 + 162811 AA----------TAAAACCT----------A-----GAGTCAAATGATACTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTCGCCCattcatttc-ttcaccaaaa---aattagcctgaccctaggctaggtgcttgaggat---gagacatg-tgattcatggtatttgctctcaaggaacttatta-tttgtttggggaaa-aagacCACTGAATTT----GAAGAGGcagtaaagca s panTro5.chr22 28762725 199 + 37823149 AAACATG-TTTTTAAAACCT----------A-----GAGTCAAATGATACTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTCGCCCattcatttc-ttcaccaaaa---aattagcctgaccctaggctaggtgcttgaggat---gagacatg-tgattcatggtatttgctctcaagaaacttatta-tttgtttggggaaa-aagaccactgaattt----gaagaggcagtaaagca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41067801 199 + 50109623 AAACATG-TTTTTAAAACCT----------A-----GAGTCAAATGATACTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTCGCCCattcatttc-ttcaccaaaa---aattagcctgaccctaggctaggtgcttgaggat---gagacatg-tgattcatggtatttgctctcaaggaacttatta-ttcgtttggggaaa-aagaccactgaattt----gaagaggcagtaaagca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3039783 203 + 4464012 AAACATG-TTTTTAAAACCT----------AGAGTCGAGTCAAATGATACTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTCGCCCattcatttc-ttcacc-aaa---aattagcctgaccctaggctaggtgcctgaggat---gagacatg-tgattcatggtatttgctctcaaggaacttatta-tttgtttggggaaa-aagaccactgaattt----gaagaggcagtaaagca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569609 194 - 115148730 AAACATG-TTTTTAAAACCT----------A-----GAGTCAAATGATACTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTTGCCCattcatttc-ttcacc-aaa---agttagcctgaccctaggctaggtgcctgaggat---gagacatg-tgattcatgctatttgctctcaaggaacttatt-----gtttggggaaa-aagacCACTGAATTT----GAAGAGGcagtaaagca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84192283 199 + 92844088 AAACATG-TTTTTAAAACCT----------A-----GAGTCAAAGGATACTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTCGCCCattcattcc-ttcacc-aaa---aattagcctgaccctaggctaggtgcctgaggat---gagacgtg-tgattcatggcatttgctctcaaggaacttattattttgtttggggaaa-aagaccactgaattt----gaagaggcagtaaagca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87537129 199 - 96509753 AAACATG-TTTTTAAAACCT----------A-----GAGTCAAAGGATACTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTCGCCCattcattcc-ttcacc-aaa---aattagcctgaccctaggctaggtgcctgaggat---gagacgtg-tgattcatggcatttgctctcaaggaacttattattttgtttggggaaa-aagacCACTGAATTT----GAAGAGGCAGTaaagca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025735 199 - 13098629 AAACATG-TTTTTAAAACCT----------A-----GAGTCAAAGGATACTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTCGCCCattcattcc-ttcacc-aaa---aattagcctgaccctaggctaggtgcctgaggat---gagacgtg-tgattcatggcatttgctctcaaggaacttattattttgtttggggaaa-aagaccactgaattt----gaagaggcagtaaagca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997483 199 - 4483953 AAACATG-TTTTTAAAACCT----------A-----GAGTCAAAGGATACTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTCGCCCattcattcc-ttcacc-aaa---aattagcctgaccctaggctaggtgcctgaggat---gagacgtg-tgattcatggcatttgctctcaaggaacttattattttgtttggggaaa-aagaccactgaattt----gaagaggcagtaaagca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24623872 198 + 33263144 AAACATG-TTTTTAAAA-CT----------A-----GAGTCAAAGGATACTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTCGCCCattcattcc-ttcacc-aaa---aattagtctgaccctaggctaggtgcctgaggat---gagacgtg-tgattcatggcatttgctctcaaggaacttattattttgtttggggaaa-aagacCACTGAATTT----GAAGAGGCAGTaaagca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894422 199 - 14338769 AAACATG-TTTTTAAAACCT----------A-----GAGTCAAAGGATACTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTCGCCCattcattcc-ttcacc-aaa---aattagcctgaccctaggctaggtgcctgaggat---gagacgtg-tgattcatggcatttgctctcaaggaacttattattttgtttggggaaa-aagaccactgaattt----gaagaggcagtaaagca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 841008 199 + 1946073 AAACATG-TTTTTAAAACCT----------A-----GAGTCAAAGGATACTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTCACCCattcattcc-ttcacc-aaa---aatcagcctgaccctaggctaggtacctgaggat---gagacgtg-tgattcgtggcatttgctctcaaggaacttattattttgtttggggaaa-aagaccactgaattt----gaagaggcagtaaagca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1880977 174 - 2117846 aaa----------aaaaCCT----------G-----GAGTCAAAGGATATTCACTG-AAC---------------------------------------------------------------------------------------ACATACAGGTCGCCCA-CCATTCC-TTCACT-AAA---AATTAGCCTTACCATAGTCTAGGT---------------GACTTG-TGATTCACAGCATTTGCTCTCAAGGAAC---TTATTTTATTTGGGGAAA-AAGACCACTGAATTT----GAAGAGGcagtaaagca i calJac3.chrUn_GL286373 I 322 C 0 s saiBol1.JH378157 8801154 186 - 16357246 AAACATG-TTTTTAAAACCT----------A-----GAGTCAAAGGATATTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTTGCCCA-CCATTCC-TTCACT-AAA---AATTAGCCTGACCCTGGGCTAGGT---------------GACTTG-TGATTCATGGCATTTGCTCTCAAGGAACTTATTATTTTGTTTGGGGAAA-AAGACCACGGAATTT----GAAGAGGcagtaaagca i saiBol1.JH378157 I 1 C 0 s cebCap1.NW_016107750v1 1274274 201 - 1807191 AAACATGTTTTTTAAAACATATTTTAAAAAA-----ATATCAACGGATATTCATTG-AAC---------------------------------------------------------------------------------------ACATACAGGTCGCCCA-CCATTCC-TTCATT-AAA---AATTAGCCTGACCCTAGGCTAGGT---------------GACCTG-TGATTcatggcctttgctctcaaggaatttattattttgtttggggaga-aagaccaCGGAATTTTTGGGAAGAGGCAGTaaagca i cebCap1.NW_016107750v1 I 1 C 0 s otoGar3.GL873526 36245430 286 - 42659167 AAAGATG-TTTTTAAAAACT----------A-----GAGTCAA-GGACATTTATTG-AATACAtagagcagcggttcctaacctgtgggtcgtgacccacagaagtgtattaaagggctgtggcattaggaaagttgagaaccactgACATAGAGGATGCCTattcattctattcact-gaa---tattagcctgactctaagctaagtgctcaaggatatgaagaagtgttgagccgaggtctttgctctcaaggagcttgcTT-TTTGCTAAG---AC-AAGACCACTGCATTC----AAAGACacagaacagca i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46041254 202 - 69331447 AAACATG-TTTTACAAAAAC----------T-----GAGTCAATGGATAGTTACTGAAAC---------------------------------------------------------------------------------------ACATAGAGGATGCCCattcatttcattcagc-aaatactactagcctgaccctaagctgagtacttgagcct--ggagaggag-tgaacaggggc--ttg-tctcaaggagcttatag-tttgtttgaagagataAGATCACTGCATTT----GAAAAGGCAATAGAGCA i canFam3.chr10 C 0 I 4147 e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I a score=418475.000000 s hg38.chr22_GL383582v2_alt 9752 43 + 162811 ttgttcaagagtttgaacaacctgggttcaaatcccagctttt------ s panTro5.chr22 28762924 43 + 37823149 ttgttcaagagtttgaacaacctgggttcaaatcccagctttt------ i panTro5.chr22 C 0 C 0 s panPan2.chr22 41068000 43 + 50109623 ttgttcaagagtttgaacaacctgggttcaaatcccagctttt------ i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3039986 43 + 4464012 ttgttcaagagtttgaacaacctgggttcaaatcccagctttt------ i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569803 43 - 115148730 ttgttcaagagtctgaacaacctgggttcaaatcccaactttt------ i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84192482 43 + 92844088 ttgttcaagagtttgaacaacctgggttcaaatcccaactttt------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87537328 43 - 96509753 ttgttcaagagtttgaacaacctgggttcaaatcccaactttt------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025934 43 - 13098629 ttgttcaagagtttgaacaacctgggttcaaatcccaactttt------ i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997682 43 - 4483953 ttgttcaagagtttgaacaacctgggttcaaatcccaactttt------ i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24624070 43 + 33263144 ttgttcaagagtttgaacaacctgggttcaaatcccaactttt------ i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894621 43 - 14338769 ttgttcaagagtttgaacaacctgggttcaaatcccaactttt------ i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 841207 43 + 1946073 tttttcaagagtttgaacaacctaggttcaaatcccaactttt------ i colAng1.NW_012115588v1 C 0 I 3077 s calJac3.chrUn_GL286373 1881151 42 - 2117846 ttgttcaagagtttgaacaacctgggttcaaatcccaactct------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8801340 42 - 16357246 ttgttcaagagtttgaacaacttgggttcaaatcccaacgct------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1274475 42 - 1807191 ttgttcaaaagtttgaacaacctgggtttaaatcccaactct------- i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36245716 49 - 42659167 cagttcaagaatctgagcaacctgggttcaaatcccagctctctctcct i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46041456 4147 - 69331447 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I a score=443072.000000 s hg38.chr22_GL383582v2_alt 9795 54 + 162811 gttagctatatgatcccgtgtaagttaactttcttgtgcctgagtgtatttttt s panTro5.chr22 28762967 54 + 37823149 gttagctatatgatcccgtgtaagttaactttcttgtgcctgagtgtattttta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41068043 54 + 50109623 gttagctatatgatcccgtgtaagttaactttcttgtgcctgagtgtatttttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3040029 54 + 4464012 gttagctatatgatcccgtgtaagttaactttcttgtgcctgagtgtatttttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569846 54 - 115148730 gttagctatatgatcctgtgtaagttaactttcttgtgcctgagAGTATTTTTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84192525 54 + 92844088 gttaggtatatgatcctgtgtaagttaactttcttgtgcctgagtgtatttttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87537371 54 - 96509753 gttaggtatatgatcctgtgtaagttaactttcttgtgcctgagtgtatttttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7025977 54 - 13098629 gttaggtatatgatcctgtgtaagttaactttcttgtgcctgagtgtatttttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997725 54 - 4483953 gttaggtatatgatcctgtgtaagttaaccttcttgtgcctgagtgtatttttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24624113 54 + 33263144 gttaggtatatgatcctgtgtaagttaactttcttgtacctgagtGTATTTTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894664 54 - 14338769 gttgggtatatgatcctgtgtaagttaaccttcttgtgcctgagtgtatttttt i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1881193 53 - 2117846 gtta-ttgtatgatcctctgtaagttaactttcttgtgcctgagtgtatttttt i calJac3.chrUn_GL286373 C 0 I 4059 s saiBol1.JH378157 8801382 54 - 16357246 gttagctgtatgatcatctgtaagttaactttcttgtgcctgagtgtattaaaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1274517 54 - 1807191 gttagctgtatgatcctctgtaagttaactttcttgtgcctgagtgtttttttt i cebCap1.NW_016107750v1 C 0 I 1647 s otoGar3.GL873526 36245765 54 - 42659167 gtcagtattttgatcctgggtgagttaacttccttgtgcctgagtgtatttatc i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46041456 4147 - 69331447 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I e colAng1.NW_012115588v1 841250 3077 + 1946073 I a score=-1566.000000 s hg38.chr22_GL383582v2_alt 9849 6 + 162811 aaaaaa s panTro5.chr22 28763021 6 + 37823149 aaaAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41068097 6 + 50109623 aaaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3040083 6 + 4464012 aaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569900 6 - 115148730 AAAAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84192579 5 + 92844088 tt-aaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87537425 5 - 96509753 tt-aaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7026031 5 - 13098629 tt-taa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997779 6 - 4483953 ttaaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24624167 6 + 33263144 TTTTAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894718 6 - 14338769 tttaaa i manLeu1.NW_012102031v1 C 0 C 0 s saiBol1.JH378157 8801436 4 - 16357246 --aaaa i saiBol1.JH378157 C 0 C 0 s otoGar3.GL873526 36245819 6 - 42659167 agcaaa i otoGar3.GL873526 C 0 I 3773 e canFam3.chr10 46041456 4147 - 69331447 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I e colAng1.NW_012115588v1 841250 3077 + 1946073 I a score=38236.000000 s hg38.chr22_GL383582v2_alt 9855 12 + 162811 tTATTTTATGgg-- s panTro5.chr22 28763027 12 + 37823149 TTATTTTATGgg-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41068103 12 + 50109623 tTATTTTATGgg-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3040089 12 + 4464012 tTATTTTATGgg-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569906 12 - 115148730 TTATTTTAGGga-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84192584 12 + 92844088 ttaTTTTTTTAg-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87537430 12 - 96509753 ttacTTTTTTAg-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7026036 12 - 13098629 ttaTTTTTTTAg-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997785 12 - 4483953 ttaTTTTTTTAg-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24624173 12 + 33263144 TTATTTTTTTAg-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894724 12 - 14338769 ttaTTTTTTTAg-- i manLeu1.NW_012102031v1 C 0 C 0 s saiBol1.JH378157 8801440 14 - 16357246 attttttttaagag i saiBol1.JH378157 C 0 I 1575 e canFam3.chr10 46041456 4147 - 69331447 I e otoGar3.GL873526 36245825 3773 - 42659167 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I e colAng1.NW_012115588v1 841250 3077 + 1946073 I a score=1088547.000000 s hg38.chr22_GL383582v2_alt 9867 257 + 162811 ctgggcgcggtggctcacgcctgtaat-cccagcactttgggaggccgaggtgggcggatca--tgaggtcaggagatcgagactaccctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccgggtgtggtggtgggtgcctgtaattccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggtggaccttgcagtgagccgaggtcgcaccactgcactccagcctggg s panTro5.chr22 28763039 254 + 37823149 ctgggcacggtggctcacgcctgtaat-cccagcactttgggaggccaaggtgggcggatca--tgaggtcaggagattgagactaccctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccgggtgtggtggtgggtgcctgtaattccagctactcgggaggctgaggc---agaatggtgtgaacccgggaggtggaccttgcagtgagccgaggtcgcaccactgcactccagcctggg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41068115 254 + 50109623 ctgggcgcggtggctcacgcctgtaat-cccagcactttgggaggccgaggtgggcggatca--tgaggtcaggagattgagactaccctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccgggtgtggtggtgggtgcctgtaattccagctactcgggaggctgaggc---agaatggtgtgaacccgggaggtggaccttgcagtgagccgaggtcgcaccactgcactccagcctggg i panPan2.chr22 C 0 I 4001 s gorGor5.CYUI01015375v1 3040101 257 + 4464012 ctgggcacggtagctcacgcctgtaat-cccagcactttgggaggccgaggtgggcagatca--tgaggtcaggagatcgagactaccctggctaacacagtgaaaccccatctctactaaaaatacaaaaaattagccgggcgtggtggcgggtgcctgtaattccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggtggagcttgcagtgagccgaggtcgcaccactgcactccagcctggg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106569918 257 - 115148730 ctgggcgcagtggctcacgcctgtaat-cccagcactttgggaggccgaggcgggcggatca--ggaggtcaggagattgagactaccctggctaacacagtgaaaccctgtctctactaaaaatacaaaaaattagctgggcgtggtggcgggtgcctgtaattccagctacttgggaggctgaggcaggagaatggtgtgaacccgggaggttgagcttgcagtgagccgaggtcacaccactgcactccagcctggg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84192596 258 + 92844088 ccgggtgcggtggctcccgcctgtaatccccagcactttgggaggctgaggagggtggatcacctgaggtcaggagtttaagaccagcctggccaacatggcgaaaccccatttctactaaaatcac-aaacattagccaggcgtggtggcgggcgcccgtaatcctagctactcgggaggctgaggcaggagaatcacttcaacccgggaggcggaggtggcagtgagctgagatggtgccactgcactccagcct-gg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87537442 258 - 96509753 ccgggtgcggtggctcacgcctgtaatccccagcactttgggaggctgaggagggtggatcacctgaggtcaggagtttaagaccagcctggccaacatggcgaaaccccatttctactaaaatcac-aaacattagccaggcgtggtggcgggcgcccgtaatcccagctactcgggaggctgaggcaggagaatcacttcaacccgggaggcggaggtggcagtgagctgagatggtgccactgcactccagcct-gg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7026048 258 - 13098629 ccgggtgcggtggctcacgcctgtaatccccagcactttgggaggctgaggagggtggatcacctgaggtcaggagtttaagaccagcctggccaacatggcgaaaccccatttctactaaaatcac-aaacattagccaggcgtggtggcgggcgcctgtaatcccagctactcgggaggctaaggcaggagaatcacttcaacccgggaggcggaggtggcagtgagctgagatggtgccactgcactccagcct-gg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 3997797 259 - 4483953 ccgggtgcggtggctcacgcctgtaatccccagcactttgggaggctgaggagggtggatcacctgaggtcaggagtttaagaccagcctggccaacatggcgaaaccccatctctactaaaattac-aaacattagccgggcgtggtggcgggcgcctgtaatcccagctactctggaggccgaggcaggagaatcacttcaacccgggaggcggaggttgcagtgagctgagatggtgccactgcactccagcctggg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24624185 259 + 33263144 ccgggtgcggcggctcacgcctataatccccagcactttgggaggctgaggagggtggatcacctgaggtcaggagtttaagaccagcctggccaacatggcgaaaccccatctctactaaaattac-aaacattagccaggcatggtggcgggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttcaacccgggaggcggcggtggcagtgagctgagatggtgccactgcactccagcctggg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13894736 259 - 14338769 ccgggtgcggtggctcacgcctgtaatccccagcactttgggaggctgaggagggtggatcacctgaggtcaggagtttaagaccagcctggccaacatggcgaaaccccatctctactaaaattac-aaacattagccgggcgtggtggcgggcgcctgtaatcccagctactcgggaggccgaggcaggagaatcacttcaacccgggaggcggaggttgcagtgagctgagatggtgccactgcactccagcctggg i manLeu1.NW_012102031v1 C 0 C 0 e canFam3.chr10 46041456 4147 - 69331447 I e otoGar3.GL873526 36245825 3773 - 42659167 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I e colAng1.NW_012115588v1 841250 3077 + 1946073 I a score=109200.000000 s hg38.chr22_GL383582v2_alt 10124 30 + 162811 tgacagagcgagactccgtctcaaaaaaaa s panTro5.chr22 28763293 30 + 37823149 tgacagagcgagactccgtctcaaaaaaaa i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3040358 30 + 4464012 tgacagagcgagactccgtctcaaaaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106570175 30 - 115148730 tgacacagtgagactccgtctcaaaaaaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84192854 30 + 92844088 tgaaagagtgagactgtgtctcaaaaaaaa i rheMac8.chr10 C 0 I 3963 s macFas5.chr10 87537700 30 - 96509753 tgaaagagtgagactgtgtctcaaaaaaaa i macFas5.chr10 C 0 I 1 s macNem1.NW_012012688v1 7026306 30 - 13098629 tgaaagagtgagactgtgtctcaaaaaaaa i macNem1.NW_012012688v1 C 0 I 3666 s cerAty1.NW_011999588v1 3998056 30 - 4483953 tgaaagagtgagactgtgtctcaaaaaaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24624444 30 + 33263144 tgaaagagtgagactgtgtctcaaaaaaaa i chlSab2.chr19 C 0 I 3656 s manLeu1.NW_012102031v1 13894995 30 - 14338769 tgaaagagtgagactgtgtctcaaaaaaaa i manLeu1.NW_012102031v1 C 0 C 0 e canFam3.chr10 46041456 4147 - 69331447 I e otoGar3.GL873526 36245825 3773 - 42659167 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I e colAng1.NW_012115588v1 841250 3077 + 1946073 I e panPan2.chr22 41068369 4001 + 50109623 I a score=10893.000000 s hg38.chr22_GL383582v2_alt 10154 13 + 162811 taataaTTATTTT s panTro5.chr22 28763323 13 + 37823149 aaataaTTATTTT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3040388 13 + 4464012 taataaTTATTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106570205 7 - 115148730 aaaaa------TT i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87537731 13 - 96509753 aaaaaattatttt i macFas5.chr10 I 1 C 0 s cerAty1.NW_011999588v1 3998086 12 - 4483953 -caaaattatttt i cerAty1.NW_011999588v1 C 0 I 3645 s manLeu1.NW_012102031v1 13895025 12 - 14338769 -caaaattatttt i manLeu1.NW_012102031v1 C 0 I 3646 e canFam3.chr10 46041456 4147 - 69331447 I e otoGar3.GL873526 36245825 3773 - 42659167 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I e colAng1.NW_012115588v1 841250 3077 + 1946073 I e chlSab2.chr19 24624474 3656 + 33263144 I e macNem1.NW_012012688v1 7026336 3666 - 13098629 I e rheMac8.chr10 84192884 3963 + 92844088 I e panPan2.chr22 41068369 4001 + 50109623 I a score=3296.000000 s hg38.chr22_GL383582v2_alt 10167 5 + 162811 ATTAg s panTro5.chr22 28763336 5 + 37823149 ATTAg i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3040401 5 + 4464012 ATTAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106570212 5 - 115148730 ATTAg i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87537744 5 - 96509753 tttgg i macFas5.chr10 C 0 I 4388 e canFam3.chr10 46041456 4147 - 69331447 I e otoGar3.GL873526 36245825 3773 - 42659167 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I e colAng1.NW_012115588v1 841250 3077 + 1946073 I e manLeu1.NW_012102031v1 13895037 3646 - 14338769 I e chlSab2.chr19 24624474 3656 + 33263144 I e cerAty1.NW_011999588v1 3998098 3645 - 4483953 I e macNem1.NW_012012688v1 7026336 3666 - 13098629 I e rheMac8.chr10 84192884 3963 + 92844088 I e panPan2.chr22 41068369 4001 + 50109623 I a score=160418.000000 s hg38.chr22_GL383582v2_alt 10172 295 + 162811 ctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctccactaaaaatacaaacatgagccgggcatggtggtgggtgcctgtaatcccagctactcgggagactgaggcaggagaatcacttgaacccgggaggtggagggtgcagtgagctgagatgg-gccactgcattccagcctgggtgacagagtgagactgtgtctcaaaaaaaaaaaaaaaa s panTro5.chr22 28763341 295 + 37823149 ctgggcgcggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctccactaaaaatacaaacatgagccgggcatggtggtgggtgcctgtaatcccagctactcgggagactgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagctgagatgg-gccactgcattccagcctgggcgacagagtgagactgtgtctcaaaaaaaaaaaaaaaa i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3040406 294 + 4464012 c-gggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctccactaaaaatacaaacatgagccgggcatggtggtgggtgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcggaggttgcagtgagctgagatgg-gccactgcattccagcctgggcgacagagtgagactgtgtctcaaaaaaaaaaaaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106570217 296 - 115148730 ctgggcgcagtggctcacacctgtaatcccagcactttgggaggccgaggcaggtggatcatctgaagtcaggagttcaagaccagcctggccaacatggtgaaaccccatctccactaaaaatacaaacatgagccgggcatggtggcgggtgcctgtaatcccagctactcgggaggctgaggcagaagaatcacttgaacccaggaggcggaggttgcagtgagctgagatggtgccactgcattccagcctgggcgacagagtgagactgtgtctcaaaaaaaagaaaaaaa i nomLeu3.chr7b C 0 I 3646 e canFam3.chr10 46041456 4147 - 69331447 I e otoGar3.GL873526 36245825 3773 - 42659167 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I e colAng1.NW_012115588v1 841250 3077 + 1946073 I e manLeu1.NW_012102031v1 13895037 3646 - 14338769 I e chlSab2.chr19 24624474 3656 + 33263144 I e cerAty1.NW_011999588v1 3998098 3645 - 4483953 I e macNem1.NW_012012688v1 7026336 3666 - 13098629 I e macFas5.chr10 87537749 4388 - 96509753 I e rheMac8.chr10 84192884 3963 + 92844088 I e panPan2.chr22 41068369 4001 + 50109623 I a score=819.000000 s hg38.chr22_GL383582v2_alt 10467 3 + 162811 aaa s panTro5.chr22 28763636 3 + 37823149 aaa i panTro5.chr22 C 0 I 3778 s gorGor5.CYUI01015375v1 3040700 3 + 4464012 aaa i gorGor5.CYUI01015375v1 C 0 I 3668 e canFam3.chr10 46041456 4147 - 69331447 I e otoGar3.GL873526 36245825 3773 - 42659167 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I e colAng1.NW_012115588v1 841250 3077 + 1946073 I e manLeu1.NW_012102031v1 13895037 3646 - 14338769 I e chlSab2.chr19 24624474 3656 + 33263144 I e cerAty1.NW_011999588v1 3998098 3645 - 4483953 I e macNem1.NW_012012688v1 7026336 3666 - 13098629 I e macFas5.chr10 87537749 4388 - 96509753 I e rheMac8.chr10 84192884 3963 + 92844088 I e nomLeu3.chr7b 106570513 3646 - 115148730 I e panPan2.chr22 41068369 4001 + 50109623 I a score=0.000000 s hg38.chr22_GL383582v2_alt 10470 294 + 162811 ggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctcaaaaaa e canFam3.chr10 46041456 4147 - 69331447 I e otoGar3.GL873526 36245825 3773 - 42659167 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I e colAng1.NW_012115588v1 841250 3077 + 1946073 I e manLeu1.NW_012102031v1 13895037 3646 - 14338769 I e chlSab2.chr19 24624474 3656 + 33263144 I e cerAty1.NW_011999588v1 3998098 3645 - 4483953 I e macNem1.NW_012012688v1 7026336 3666 - 13098629 I e macFas5.chr10 87537749 4388 - 96509753 I e rheMac8.chr10 84192884 3963 + 92844088 I e nomLeu3.chr7b 106570513 3646 - 115148730 I e gorGor5.CYUI01015375v1 3040703 3668 + 4464012 I e panPan2.chr22 41068369 4001 + 50109623 I e panTro5.chr22 28763639 3778 + 37823149 I a score=807.000000 s hg38.chr22_GL383582v2_alt 10764 29 + 162811 aataaTTATTATTTTATTAgctgggcgcg s nomLeu3.chr7b 106574159 28 - 115148730 aataaatgttagtt-attggccagtcaca i nomLeu3.chr7b I 3646 C 0 e canFam3.chr10 46041456 4147 - 69331447 I e otoGar3.GL873526 36245825 3773 - 42659167 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I e colAng1.NW_012115588v1 841250 3077 + 1946073 I e manLeu1.NW_012102031v1 13895037 3646 - 14338769 I e chlSab2.chr19 24624474 3656 + 33263144 I e cerAty1.NW_011999588v1 3998098 3645 - 4483953 I e macNem1.NW_012012688v1 7026336 3666 - 13098629 I e macFas5.chr10 87537749 4388 - 96509753 I e rheMac8.chr10 84192884 3963 + 92844088 I e gorGor5.CYUI01015375v1 3040703 3668 + 4464012 I e panPan2.chr22 41068369 4001 + 50109623 I e panTro5.chr22 28763639 3778 + 37823149 I a score=1270683.000000 s hg38.chr22_GL383582v2_alt 10793 273 + 162811 gtggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcaagacagcctggccaacatggtgaaaccccgtttctactaaaaatacaaaagttagccaggtgtggtggcacgcaactataatcccagctactcgggaggctgaggcatggggaaatcacttgaacccgggaggtggaggttgcagtgagccaagatcgcgccattgccctccagcctgggagacaagagcgagactctgtctc s panTro5.chr22 28767417 273 + 37823149 gtggctcatgcctgtaatcccagcactttggcaggcccaggccggcggatcacctgaggtcaggagttcaagacagcctggccaacatggtgaaaccccgtttctactaaaaatacaaaagttagccaggtgtggtggcacgcaactataatcccagctactcgggaggctgaggcatggggaaatcacttgaacccgggaggtggaggttgcagtgagccgaaatcgcgccattgccctccagcctgggagacaagagcgagactctgtctc i panTro5.chr22 I 3778 C 0 s panPan2.chr22 41072370 272 + 50109623 gtggctcatgcctgtaatcccagcactttggcaggcccaggccggcggatcacctgaggtcaggagttcaagacagcctggccaacatggtgaaaccccgtttctactaaaaatacaaaagttagccaggtgtggtggcacgcaactataatcccagctactcgggaggctgaggcatggggaaatcacttgaacccgggaggtggaggttgcagtgagccgaaatcgcgccattgccttccagcctgggagacaagagcgagactctgtct- i panPan2.chr22 I 4001 C 0 s gorGor5.CYUI01015375v1 3044371 273 + 4464012 gtggctcatgcctgtaatcccagcactttggcaggcccaggcctgcggatcacctgaggtcaggagttcaagacagcctggccaacatggtgaaaccccgtttctactgaaaatacaaaagttagccaggtgtggtggcacgcaactataatcccagctactcgggaggctgaggcatggggaaatcacttgaacccgggaggtggaggttgcagtgagccaagatcgcgccactgccctccagcctgggagacaagagcgagactctgtctc i gorGor5.CYUI01015375v1 I 3668 C 0 s nomLeu3.chr7b 106574187 272 - 115148730 gtggctcatgcctgtaatcccagcactttggcaggccaaggctggcggatcacctgaggtcaggagttcaagacagcctggccaacatggtgaaaccccgtttctactaaaaatacaaaagttagccaggtgtggtggcatgcaactataatcccagctacttgggaggctgaggcatgggg-aatcacttgaacccgggaggcggaggttgcagtgagccgagatcgcgccattgcactccagcctgggagacaagagcgagactctgtctc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84196847 269 + 92844088 gtggctcatgcctgtaatcccagcactttggcaggctaaggccagcggatcacctgaggtcagaagttcgagacagcctggccaacatggtgaaaccccatctctactaaaaatacaaaagttagccaggtatggtggcgcgcacctataatcccagctacttgggacgctgaggcatgggg-aatcacttgaacccgggaggcagaggttgcagtgagccgagatcgcgccattgcactccagcctgggagac-agagcgagactgtctc-- i rheMac8.chr10 I 3963 I 2 s macNem1.NW_012012688v1 7030002 269 - 13098629 gtggctcatgcctgtaatcccagcactttggcaggctgaggccagcggatcacctgaggtcagaagttcgagacagcctggccaacatggtgaaaccccatctctactaaaaatacaaaagttagccaggtgtggtggcgcgcgcctataatcccagctacttgggacgctgaggcatgggg-aatcacttgaacccgggaggcagaggttgcagtgagccgagatcgcgccattgcactccagcctgggagag-agagcgagactgtctc-- i macNem1.NW_012012688v1 I 3666 C 0 s cerAty1.NW_011999588v1 4001743 269 - 4483953 gtggctcatgcctgtaatcccagcactttggcaggctgaggccagcggatcacctgaggtcagaagttcgagacagcctggccaacatggtgaaaccccatctctactaaaaatacaaaagttagccaggtgtggtggcgcgcgcctataatcccagctacttgggaggctgaggcatgggg-aatcacttgaacccgggaggcggaggttgcagtgagccgagatcgcgccattgcactccagcctgggagac-agagcgagactgtctc-- i cerAty1.NW_011999588v1 I 3645 C 0 s chlSab2.chr19 24628130 269 + 33263144 gtggctcatgcctgtaatcccagcactttggcaggctgaggccagcggatcacctgaggtcagaagtttgagacagcctggccaacatggtgaaaccccatctctactaaaaattcaaaagttagccaggtgtggtggcgcgcgcctataatcccagctacttgggatgctgaggcatgggg-aatcacttgaacccgggaggcggaggttgcagtgagccgagatcgcgccattgcactccagcctgggagac-agagtgagactgtctc-- i chlSab2.chr19 I 3656 C 0 s manLeu1.NW_012102031v1 13898683 269 - 14338769 gtggctcatgcctgtaatcccagcactttggcaggctgaggccagcggatcacctgaggtcagaagttcgagacagcctggccaacatggtgaaaccccatctctactaaaaatacaaaagttagccaggtgtggtggtgcgcgcctataatcccagctacttgggaggctgaggcatgggg-aatcacttgaacccgggaggcggaggttgcagtgagccgagatcgcgccattgcactccagcctgggagac-agagcgagactgtctc-- i manLeu1.NW_012102031v1 I 3646 C 0 s colAng1.NW_012115588v1 844327 269 + 1946073 gtggctcatacctgtaatcccagcactttggcaggccgaggccagcggatcacctgaggtcagaagttcgagacagcctggccaacatggtgaaaccccatctctactaaaaatacaaaagttagccaggtgtggtggcgcacgcccataatcccagctacttgggaggctgaggcatgggg-aatcacttgaacccaggaggcggaggttgcagtgagtcaagatcgcgccattgcactccagcctgggagac-agagcgagactgtctc-- i colAng1.NW_012115588v1 I 3077 C 0 e canFam3.chr10 46041456 4147 - 69331447 I e otoGar3.GL873526 36245825 3773 - 42659167 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I e macFas5.chr10 87537749 4388 - 96509753 I a score=441914.000000 s hg38.chr22_GL383582v2_alt 11066 100 + 162811 aaaaaaaaaa--------aaaaaaaaaaaa---GTGAGTTATCATTACTGTTTTTTTCATTAAATACTTAAAATTTTACTTTTGTTTTTTATTAATGCTCAGGCTGTTCTA s panTro5.chr22 28767690 103 + 37823149 aaaaaaaaaa--------aaaaaaaaaaaaaaaGTGAGTTATCATTACTATTTTTTTCATTAAATACTTAAAATTTTACTTTTGTTTTTTATTAATGCTCAGGCTGTTCTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41072642 97 + 50109623 -acaaaaaaa--------aaaaaaaaaaaa---GTGAGTTATCATTACTA-TTTTTTCATTAAATACTTAAAATTTTACTTTTG-TTTTTATTAATGCTCAGGCTGTTCTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3044644 91 + 4464012 aaaaaaaaaa--------aaa------------GTGAGTTATCATTACTATTTTTTTCATTAAATACTTAAAATTTTACTTTTGTTTTTTATTAATGCTCAGGCTGTTCTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106574459 95 - 115148730 aaaaaaaaaa--------aaaaaaa--------GTGAGTTATCATTACTATTTTTTTCATTAAATACTTAAAATTTTACTTTTTTTTTTTATTAATCCTCAGGCTGTTCTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197118 96 + 92844088 aaaaaaaaaa--------aaaaaaaaaaaa---GTGAGTTATCAATACTATTTTTTTCATTAAATACTTAAAATTTTACTTTTG---TTTATTAATGCTCAGGCTG-TCTA i rheMac8.chr10 I 2 C 0 s macFas5.chr10 87542137 96 - 96509753 aaaaaaaaaa--------aaaaaaaaaaaa---GTGAGTTATCAATACTATTTTTTTCATTAAATACTTAAAATTTTACTTTTG---TTTATTAATGCTCAGGCTG-TCTA i macFas5.chr10 I 4388 C 0 s macNem1.NW_012012688v1 7030271 84 - 13098629 --------------------aaaaaaaaaa---GTGAGTTATCAATACTATTTTTTTCATTAAATACTTGAAATTTTACTTTTG---TTTATTAATGCTCAGGCTG-TCTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002012 93 - 4483953 ----aaaaaa--------aaaaaaaaaaaa---GTGAGTTATCAATACTATTTTTTTCATTAAATACTTAAAATTTTACTTTTG---TTTATTAATGCTCAGGCTGTTCTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24628399 99 + 33263144 ------aaaaaaacaaacaaacaaaaaaaa---GTGAGTTATCAATACTATTTTTTTCATTAAATACTTAAAATTTTACTTTTG---TTTATTAATGCTCAGGCTGTTCTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13898952 91 - 14338769 ------aaaa--------aaaaaaaaaaaa---GTGAGTTAACAATACTATTTTTTTCATTAAATACTTAAAATTTTACTTTTG---TTTATTAATGCTCAGGCTGTTCTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 844596 88 + 1946073 ---------a--------aaaaaaaaaaaa---aaGAGTTATCAATACTATTTTTTTCATTAAATACTTAAAATTTTACTTCTG---TTTATTAATGCTCAGGCTGTTCTA i colAng1.NW_012115588v1 C 0 C 0 e canFam3.chr10 46041456 4147 - 69331447 I e otoGar3.GL873526 36245825 3773 - 42659167 I e proCoq1.NW_012136747v1 4991477 5715 - 6317780 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=7098.000000 s hg38.chr22_GL383582v2_alt 11166 1 + 162811 A s panTro5.chr22 28767793 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41072739 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3044735 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106574554 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197214 1 + 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87542233 1 - 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7030355 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002105 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24628498 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899043 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 844684 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s proCoq1.NW_012136747v1 4997192 1 - 6317780 a i proCoq1.NW_012136747v1 I 5715 C 0 e canFam3.chr10 46041456 4147 - 69331447 I e otoGar3.GL873526 36245825 3773 - 42659167 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=9100.000000 s hg38.chr22_GL383582v2_alt 11167 1 + 162811 G s panTro5.chr22 28767794 1 + 37823149 G i panTro5.chr22 C 0 C 0 s panPan2.chr22 41072740 1 + 50109623 G i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3044736 1 + 4464012 G i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106574555 1 - 115148730 G i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197215 1 + 92844088 G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87542234 1 - 96509753 G i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7030356 1 - 13098629 G i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002106 1 - 4483953 G i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24628499 1 + 33263144 G i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899044 1 - 14338769 G i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 844685 1 + 1946073 G i colAng1.NW_012115588v1 C 0 C 0 s proCoq1.NW_012136747v1 4997193 1 - 6317780 g i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36249598 1 - 42659167 g i otoGar3.GL873526 I 3773 C 0 e canFam3.chr10 46041456 4147 - 69331447 I e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=124337.000000 s hg38.chr22_GL383582v2_alt 11168 26 + 162811 TTCTCAACACTATTACTTATTCCCCT s panTro5.chr22 28767795 26 + 37823149 TTCTCAACACGATTACTTATTCCCCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41072741 26 + 50109623 TTCTCAACACGATTACTTATTCCCCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3044737 26 + 4464012 TTCTCAACACTATTACTTATTCCCCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106574556 26 - 115148730 TTATCAACACTATTACTTATCCCCCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197216 21 + 92844088 TTATTGACACTATT-----TTCCCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87542235 21 - 96509753 TTATTGACACTATT-----TTCCCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7030357 21 - 13098629 TTATTGACACTATT-----TTCCCCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002107 21 - 4483953 TTATTGACACTATT-----TTCCCCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24628500 21 + 33263144 GTATTGACACTATT-----TTCCCCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899045 21 - 14338769 TTATTGACACTATT-----TTCCCCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 844686 21 + 1946073 TTATTGACACTATT-----TTCCCCT i colAng1.NW_012115588v1 C 0 C 0 s proCoq1.NW_012136747v1 4997194 26 - 6317780 ttatcaATACTATCACTTATTGCCAA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36249599 26 - 42659167 ttatcagtactattACTTACTCCCAA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46045603 26 - 69331447 ttatAAATACTATTACATATTCCCAA i canFam3.chr10 I 4147 C 0 e micMur3.chr7 5631268 4379 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=576063.000000 s hg38.chr22_GL383582v2_alt 11194 64 + 162811 TCCTTGATTTGATTCCTCAGCTGGAGTC-CTGATGATGGATACCATAAAACCCGTGTGGC-ACAGG s panTro5.chr22 28767821 64 + 37823149 TCCTTGATTTGATTCCTCAGCTGGAGTC-CTGATGATGGATACCATAAAACCCGTGTGGC-ACAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41072767 64 + 50109623 TCCTTGATTTGATTCCTCAGCTGGAGTC-CTGATGATGGATACCATAAAACCCGTGTGGC-ACAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3044763 64 + 4464012 TCCTTGATTTGATTCCTCAGCTGGAGTC-CTGATGATGGATACCATAAAACCCGTGTGGC-ACAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106574582 64 - 115148730 TCCTTGATTTGATTCCTCAGCTGGAGTC-CTGATGATGGATACCATAAAACTCGTGTGGC-ACAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197237 64 + 92844088 TCCTTGATTTGATTCCTCAGCTGGAGTC-CTGATGATGGATACCATAAAACCCATGTGGC-ACAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87542256 64 - 96509753 TCCTTGATTTGATTCCTCAGCTGGAGTC-CTGATGATGGATACCATAAAACCCATGTGGC-ACAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7030378 64 - 13098629 TCCTTGATTTGATTCCTCAGCTGGAGTC-CTGATGATGGATACCATAAAACCCATGTGGC-ACAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002128 64 - 4483953 TCCTTGATTTGATTCCTCAGCTGGAGTC-CTGATGATGGATACCATAAAACCCATGTGGC-ACAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24628521 64 + 33263144 TCCTTGATTTGATTCCTCAGCTGGAGTC-CTGATGATGGATACCATAAAACCCGTGTGGC-ACAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899066 64 - 14338769 TCCTTGATTTGATTCCTCAGCTGGAGTC-CTGATGATGGATACCATAAAACCCATGTGGC-ACAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 844707 64 + 1946073 TCCTTGATTTGATTCCTCAGCTGGAGTC-CTGATGATGGATACCATAAAACCCATGTGGC-ACAGG i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5635647 64 + 108171978 TCCTTGGTTTGGTTCCTCAGCGGGAGTC-ATGGTGATGGAGGCCATGACACCAGTGTAGC-ACAGG i micMur3.chr7 I 4379 C 0 s proCoq1.NW_012136747v1 4997220 64 - 6317780 TCCTTGGTTTGGTTCCTCGGCTGGAGTC-ATGGTGATGGAGGCCATGACACCAGTGTAGC-ACAGG i proCoq1.NW_012136747v1 C 0 I 478 s otoGar3.GL873526 36249625 59 - 42659167 TCCTTGGTTTGGTTTCTCAGTTAGAGTC--CGGTAATGGAAGCCATG--ATCA--GCAGC-ACAGG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46045629 66 - 69331447 TTCGTGGTGTGGTTCCTCAGCTGGAGTCCCCAGTGATGGACAGCATGACATCAGTGCAGAGACAGG i canFam3.chr10 C 0 C 0 e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=321168.000000 s hg38.chr22_GL383582v2_alt 11258 41 + 162811 TTTGAGTAACTGGCCAGCTACAGATCACTGATCTTCCCCAT s panTro5.chr22 28767885 41 + 37823149 TTTGAGTAACAGGCCAGCTACAGATCACTGATCTTCCCCAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41072831 41 + 50109623 TTTGAGTAACAGGCCAGCTACAGATCACTGATCTTCCCCAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3044827 40 + 4464012 -TTAAGTAACTGGCCAGCTACAGATCACTGATCTTCCCCAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106574646 41 - 115148730 TCTGAGTAACTGGCCAGCTACAGATCACTGATCTTCCCCAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197301 41 + 92844088 TCTGTGTAACTGGCCAGCTGCAGATCACTGATCTTCCCCAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87542320 41 - 96509753 TCTGTGTAACTGGCCAGCTGCAGATCACTGATCTTCCCCAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7030442 41 - 13098629 TCTGTGTAACTGGCCAGCTGCAGATCACTGATCTTCCCCAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002192 41 - 4483953 TCTGTGTAACTGGCCAGCTGCAGATCACTGATCTTCCCCAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24628585 41 + 33263144 TCTGTGTAACTGGCCAGCTGCAGATCACTGATCTTCCCCAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899130 41 - 14338769 TCTGTGTAACTGGCCAGCTGCAGATCACTGATCTTCCCCAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 844771 41 + 1946073 TCTGAGTAACTGGCCAGCTACAGATCACTGATCTTCCCCAT i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5635711 41 + 108171978 CCTGAGCAAGTGACCGGCTTCAGACCACTGATCTTCCCCAT i micMur3.chr7 C 0 I 29 s otoGar3.GL873526 36249684 41 - 42659167 CCTGAGCAAGTGACCAGCTTCAGATAACTGATCTTCTCCAC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46045695 41 - 69331447 CCTGAGCAGTTGACCAGCTAGGGACCACCAACCTTCCCTGT i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4997284 478 - 6317780 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=249610.000000 s hg38.chr22_GL383582v2_alt 11299 38 + 162811 ---AGGGATGCATACTCCTTGACCCCTTCTTTTCTCTCCTC s panTro5.chr22 28767926 38 + 37823149 ---AGGGATGCATACTCCTTGACCCCTTCTTTTCTCTCCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41072872 38 + 50109623 ---AGGGATGCATACTCCTTGACCCCTTCTTTTCTCTCCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3044867 38 + 4464012 ---AGGGATGCATACTCCTTGACCCCTTCTTTTCTCTCCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106574687 38 - 115148730 ---AGGGATGCACACTCCTTGATGCcttcttttctctcctc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197342 38 + 92844088 ---AGGGATGCACACTCCTTGACCCcttcttttctctcctc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87542361 38 - 96509753 ---AGGGATGCACACTCCTTGACCCcttcttttctctcctc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7030483 38 - 13098629 ---AGGGATGCACACTCCTTGACCCcttcttttctctcctc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002233 38 - 4483953 ---AGGGATGCACACTCCTTGACCCcttcttttctctcctc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24628626 38 + 33263144 ---AGGGATGCACACTCCTTGACCCcttcttttctctcctc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899171 38 - 14338769 ---AGGGATGCACACTCCTTGACCCcttcttttctctcctc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 844812 38 + 1946073 ---AGGGATGCACACTCCTTGACCCcttcttttctctcctc i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36249725 30 - 42659167 ---AAGGAAGGACGC--------CCCTTCTCTTCTCTACTT i otoGar3.GL873526 C 0 I 1 s canFam3.chr10 46045736 39 - 69331447 AAGAGGGGTACCACTTCTTTGATACCCCCCCTCTCCTCC-- i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4997284 478 - 6317780 I e micMur3.chr7 5635752 29 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=549232.000000 s hg38.chr22_GL383582v2_alt 11337 66 + 162811 TTCCCTTGCTTTCTAGGCTCCTGTAGCCCTCTGCCTTCTTTTCCTCCTCTCAAGACCCTTCTGACT s panTro5.chr22 28767964 66 + 37823149 TTCCCTTGCTTTCTAGGCTCCTGTAGCCCTCTGCCTTCCTTTCCTCCTCTCAAGACCCTTCTGACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41072910 66 + 50109623 TTCCCTTGCTTTCTAGGCTCCTGTAGCCCTCTGCCTTCTTTTCCTCCTCTCAAGACCCTTCTGACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3044905 66 + 4464012 TTCCCTTGCTTTCTAGCCTCCTGTAGCCCTCTGCCTTCTTTTCCTCCTCTCAAGACCCTTCTGACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106574725 66 - 115148730 ttcccttgctctCTAGGCTCCTGTAACCCTCTGCCTACTTTTCCTCCTCTCAAGACCCTTCTGACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197380 66 + 92844088 ttcccttgctcttTAGGCTCCTGTAACCCTCTGCCTTCTTTTCCTCCTCTCAAGACCCTTCTGACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87542399 66 - 96509753 ttcccttgctcttTAGGCTCCTGTAACCCTCTGCCTTCTTTTCCTCCTCTCAAGACCCTTCTGACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7030521 66 - 13098629 ttcccttgctcttTAGGCTCCTGTAACCCTCTGCCTTCTTTTCCTCCTCTCAAGACCCTTCTGACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002271 66 - 4483953 ttcccttgctcttTAGGCTCCTGTAACCCTCTGCCTTCTTTTCCTCCTCTCAAGACCCTTCTGACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24628664 66 + 33263144 ttcccttgctcttTAGGCTCCTGTAACCCTCTGCCTTCTTTTCCTCCTCTCAAGACCCTTCTGACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899209 66 - 14338769 ttcccttgctcttTAGGCTCCTGTAACCCTCTGCCTTCTTTTCCTCCTCTCAAGACCCTTCTGACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 844850 66 + 1946073 ttcccttgctcttTAGGCTCCTGTAACCCTCTGCCTTCTTTTCCTCCTCTCAAGACCCTTCTGACT i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5635781 66 + 108171978 TTCCCCTGCTCTCTAAGCTCCTGTAACCCTCTCCCTTCTTTTCTTCCTCTCAGGACCCTTTTGACT i micMur3.chr7 I 29 I 1070 s otoGar3.GL873526 36249756 66 - 42659167 TTTCCCTGCTCTCTTAGCTCCTGTAACCCTCTGCCTTCTTTTCTGTCTCTAGGGATCCTTCCGACT i otoGar3.GL873526 I 1 C 0 s canFam3.chr10 46045775 43 - 69331447 TTCCCCTGCTCTCTAGG-----------------------TTCCTCCTTTCAGAACCCTTCTGACT i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4997284 478 - 6317780 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=1428820.000000 s hg38.chr22_GL383582v2_alt 11403 209 + 162811 TTGGGACTTTCTTCCCAAAACAGAATTTGAGGGAAGGTCTTGGGAGGGGTCG-------------------------------------------------------GTTtagaaagagctggatcctcagagtcaggatacctgggttctgtcttctacttg-gccactgattt---------acccttcacaagccaccctttttgaATGTGGTCCTCCTTCCC--CCAGCACCTTCCTCCTGCAACCAGAGAGGGTTCTGGGTACTCCTAGAA s panTro5.chr22 28768030 209 + 37823149 TTGGGACTTTCTTCCCAAAACAGAATTTGAGGGAAGGTCTTgggaggggtcg-------------------------------------------------------gtttagaaagagctggatcctcagagtcaggatacctgggttctgtcttctacttg-gccactgattt---------acccttcacaagccaccctttttgAATGTGGTCCTCCTTCCC--CCAGCACCTTCCTCCTGCAACCAGAGAGGGTTCTGGGTACTCCTAGAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41072976 209 + 50109623 TTGGGACTTTCTTCCCAAAACAGAATTTGAGGGAAGGTCTTgggaggggtcg-------------------------------------------------------gtttagaaagagctggatcctcagagtcaggatacctgggttctgtcttctacttg-gccactgattt---------acccttcacaagccaccctttttgAATGTGGTCCTCCTTCCC--CCAGCACCTTCCTCCTGCAACCAGAGAGGGTTCTGGGTACTCCTAGAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3044971 209 + 4464012 TTGGGACTTTCTTCCCAAAACAGAATTTGAGGGAAGGTCTTgggaggggtcg-------------------------------------------------------gtttagaaagagctggatcctcagagtcaggatacctgggttctgtcttctacttg-gccactgattt---------acccttcacaagccaccctttttgAATGTGGTCCTCCTTCCC--CCAGCACCTTCCTCCTGCAACCAGAGAGGGTTCTGGGTACTCCTAGAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106574791 209 - 115148730 TTGGGACTTTCTTCCCAAAACAGAATTTGAGGGAAGGTCTTGGGAGGGGTCG-------------------------------------------------------GTTTagaaagagctggatcctcagagtcaggatacctgggttctgtcttctacttg-gccactgattt---------acccttcacaagccaccctttttgAATGTGGCCCTCCTTCCC--CCAGCACCTTCCTCCTGCAACCAGGGAGGGTTCTGGGTACTCCTAGAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197446 209 + 92844088 TTAGGACTTTCTTCCCAAAACAGAATTTGAGGGAAGGTCTTgggaggggatg-------------------------------------------------------gtttagaaagagctggattctcagagtcaggatacctgggttctgtcttctacttg-gccactgattt---------acccttcacaagccaccctttttcaatgtggtcctccttccc--ccagctccttcctcctgcaaccagagagggttCTGGGTACTCCTAGAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87542465 209 - 96509753 TTAGGACTTTCTTCCCAAAACAGAATTTGAGGGAAGGTCTTgggaggggatg-------------------------------------------------------gtttagaaagagctggattctcagagtcaggatacctgagttctgtcttctacttg-gccactgattt---------acccttcacaagccaccctttttcaatgtggtcctccttccc--ccagctccttcctcctgcaaccagagagggttCTGGGTACTCCTAGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7030587 209 - 13098629 TTAGGACTTTCTTCCCAAAACAGAATTTGAGGGAAGGTCTTgggaggggatg-------------------------------------------------------gtttagaaagagctggattctcagagtcaggatacctgggttctgtcttctacttg-gccactgattt---------acccttcacaagccaccctttttcaatgtggtcctccttccc--ccagctccttcctcctgcaaccagagagggttCTGGGTACTCCTAGAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002337 209 - 4483953 TTAGGACTTTCTTCCCAAAACAGAATTTGAGGGAAGGTCTTgggaggggatg-------------------------------------------------------gtttagaaagagctggattctcagagtcaggatacctgggttctgtcttctacttg-gccactgattt---------acccttcacaagccaccctttttcaatgtggtcctccttccc--ccaGCACCTTCTTCCTGCAACCAGAGAGGGTTCTGGGTACTCCTAGAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24628730 209 + 33263144 TTAGGACTTTCTTCCCAAAACAGAATTTGAGGGAAGGTCTTgggaggggatg-------------------------------------------------------gtttagaaagagctggattctcagagtcaggatacctgggttctgtcttctacttg-gccactgattt---------acccttcacaagccaccctttttcaatgtggtcctccttccc--ccaGCACCTTCCTCCTGCAACCAGAGAGGGTTCTGGGTACTCCTAGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899275 209 - 14338769 TTAGGACTTTCTTCCCAAAACAGAATTTGAGGGAAGGTCTTgggaggggatg-------------------------------------------------------gtttagaaagagctggattctcagagtcaggatacctgggttctgtcttctacttg-gccactgattt---------acccttcacaagccaccctttttcaatgtggtcctccttccc--ccaGCACCTTCTTCCTGCAACCAGAGAGGGCTCTGGGTACTCCTAGAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 844916 209 + 1946073 TTAGGACTTTCTTCCCAAAATACAATTTGAGGGAAGGTCTTgggagggaatg-------------------------------------------------------gtttagaaagagctggattctcagagtcaggatacctgggttctgtcttctacttg-gccactgatct---------acccttcacaagccaccctttttgAATGTGGTCCTCCTTCCC--CCAGCACCTTCCTCCTGCAACCAGAGAGGGTTCTGGATACTCCTAGAA i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36249822 260 - 42659167 CTGGGACTTTCTTCCC-AAACAGTACTTAAGGGAAGATCCTGGCAGGGGGTGGTTTACTTATTTATTTATTGACATCTGTACAAGTCACACAGAAAGAGAGAGAGTAGTTTACAAAGAGTCAGGTCTTGGTGGCCAGGGTATCTGGGTTCTATCTTCAACTCACTTCAGTGACTT---------TTAC--CACAAACCCTCCTTCCTGAATCTAG-CTTCCTTCCC--TCCACACCTTCCT-CTGCAATAAGAAAGGACTCTGGACACTCAAAGAa i otoGar3.GL873526 C 0 I 304 s canFam3.chr10 46045818 209 - 69331447 TTGGGACAATCTTCTC-AAACAGTATCTGAGGGGAATTCCTGAGAGGGGATA-------------------------------------------------------GTTTAAAAACTGCTGGGTCCTAA----CTGGACAACTGA--TCTATCTTCAACTCA-GTCATCAATTTTTTTTTTAAACCCTTTGCAAACCATTCTTTCTGCATCTGGGTCTTGTTTCCCACCTCTAATTTCCCTCTGCAAAACGAAAGGGTTCTGGGCA----AAGAA i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4997284 478 - 6317780 I e micMur3.chr7 5635847 1070 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=558451.000000 s hg38.chr22_GL383582v2_alt 11612 103 + 162811 GTATTCTGCCAGGCAAACATTATGTTTTCAAACTGCTGAATTTGAATG----CACCACCCCGAA------acacacacacacacacac--acacacacacTGCTACAGTCACTCC s panTro5.chr22 28768239 93 + 37823149 GTATTCTGCCAGGCAAACATTATGTTTTCAAACTGCTGAATTTGAATa----caccaccccgaa------acacacacacacacacac------------tgctacagtcactcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073185 83 + 50109623 GTATTCTGCCAGGCAAACATTATGTTTTCAAACTGCTGAATTTGAATA----CACCACCCCAAA------ACACACAC----------------------TGCTACAGTCACTCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045180 103 + 4464012 GTATTCTGCCAGGCAAACATTATGTTTTCAAACTGCTGAATTTGAATG----CACCACCCCGAA------acacacacacacacacac--acacacacacTGCTACAGTCACTCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575000 105 - 115148730 GTATTCTGCCAGGCAAACATTATGTTTTCAAACTTCTGAATTTGAATG----CACCACCCCGAA------acacacacacacacacacacacacacacacTACTACAGTCACTCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197655 99 + 92844088 GTATTCTGCCAGGTAAACATTATGTTTTCAAACTTCTGAATTTGAATG----CACCACCCCAAA------acacacacacatacacat------acacacTGCTACTGTCACTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87542674 99 - 96509753 GTATTCTGCCAGGTAAACATTATGTTTTCAAACTTCTGAATTTGAATG----CACCACCCCAAA------acacacacacatacacat------acacacTGCTACTGTCACTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7030796 99 - 13098629 GTATTCTGCCAGGTAAACATTATGTTTTCAAACTTCTGAATTTGAATG----CACCACCCCAAA------acacacacacatacacat------acacacTGCTACTGTCACTCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002546 101 - 4483953 GTATTCTGCCAGGTAAACATTATGTTTTCAAACTTCTGAATTTGAATG----CACCACCCCAAA----acacacacacacatacacat------acacacTGCTACTGTCACTCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24628939 105 + 33263144 GTATTCTGCCAGGTAAACATTATGTTTTCAAACTTCTGAATTTGAATG----caccacccccaaacacacacacacacacatacacat------acacacTGCTACTGTCACTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899484 99 - 14338769 GTATTCTGCCAGGTAAACATTATGTTTTCAAACTTCTGAATTTGAATG----CACCACCCCAAA------acacacacacatacacat------acacacTGCTGCTGTCACTCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845125 99 + 1946073 GTATTCTGCCAGGCAAACATTATGTTTTCAAACTTCTGAATTTGAAAG----CACCACCCCAAA------acacacacacatacacat------acacacTGCTACTGTCACTCC i colAng1.NW_012115588v1 C 0 C 0 s canFam3.chr10 46046027 97 - 69331447 GTATTCTGCTAGGCAAACATTCTGTTTTTAAATACCTGCAATTGAATACCGCCCCCCCCCCCCA------ACACACAGATGCAGACAC-----------TTGCT-CTGTCACTTC i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36250082 304 - 42659167 I e proCoq1.NW_012136747v1 4997284 478 - 6317780 I e micMur3.chr7 5635847 1070 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=342538.000000 s hg38.chr22_GL383582v2_alt 11715 47 + 162811 CCACACACATCTTTTATCTGCCTG-C-CCCTGAAGGCATCTGAATTTGC s panTro5.chr22 28768332 47 + 37823149 ccacacacacCTTttatctgcctg-c-ccctgaaggcatctgaatttgc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073268 47 + 50109623 CCACACACATCTTttatctgcctg-c-ccctgaaggcatctgaatttgc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045283 47 + 4464012 CCACACACATCTTTTATCTGCCTG-C-CACTGAAGGCATCTGAATTTGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575105 47 - 115148730 CCACACACATCTTttatctgcctg-c-ccctgaaggcatctgaatttgc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197754 47 + 92844088 CCACACACATCTTttatctgcctg-c-ccctgaaggcatctgaatttgc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87542773 47 - 96509753 CCACACACATCTTTTATCTGCCTG-C-CCCTGAAGGCATCTGAATTTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7030895 47 - 13098629 CCACACACATCTTttatctgcctg-c-ccctgaaggcatctgaatttgc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002647 47 - 4483953 CCACACACATCTTttatctgcctg-c-ccctgaaggcatctgaatttgc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629044 47 + 33263144 CCACACACATCTTTTATCTGCCTG-C-CCCTGAAGGCATCTGAATTTGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899583 47 - 14338769 CCACACACATCTTttatctgcctg-c-ccctgaaggcatctgaatttgc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845224 47 + 1946073 CCACACACATCTTTTATCTGCCTG-C-CCTTGAAGGCATCTGAATTTGC i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36250386 48 - 42659167 CCACACACACCTGCTATGTGCTCATC-CCCTGAAGGTATTTGAATGTAC i otoGar3.GL873526 I 304 C 0 s canFam3.chr10 46046124 45 - 69331447 ---CCTAAGCCTATTATCCACCTG-TACTCTGAAGGCATTTAAATTTGC i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4997284 478 - 6317780 I e micMur3.chr7 5635847 1070 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=1033787.000000 s hg38.chr22_GL383582v2_alt 11762 121 + 162811 AGTCCCTGAACCAGCAGATCACTCAAGTTTCTCCTTCTCT-AGTATCGCGTGGGTTTAAGTTCTGGTCAGTAGCAATTTTTCCAAAAGTCAGCTTGAAGACAGGGACTCTGTGGAGCAGACA s panTro5.chr22 28768379 121 + 37823149 agtccctgAACCAGCAGATCACTCAAGTTTCTCCTTCTCT-AGTATCGCGTGGGTTTAAGTTCTGGTCAGTAGCAATTTTTCCAAAAGTCAGCTTGAAGACAGGGACTCTGTGGAGCAGACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073315 121 + 50109623 agtccctgAACCAGCAGATCACTCAAGTTTCTCCTTCTCT-AGTATCGCGTGGGTTTAAGTTCTGGTCAGTAGCAATTTTTCCAAAAGTCAGCTTGAAGACAGGGACTCTGTGGAGCAGACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045330 121 + 4464012 AGTCCCTGAACCAGCAGATCACTCAAGTTTCTCCTTCTCT-AGTATCGCGTGGGTTTAAGTTCTGGTCAGTAGCAATTTTTCCAAAAGTCAGCTTGAAGACAGGGACTCTGTGGAGCATACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575152 121 - 115148730 agtccctgAACCAGCAGATCACTCAAATTTCTCCTTCTCT-AGTATCGCGTGGGTTTAAGTTCTGGTCAGTAGCAATTTTTCCAAAAGTCAGCTTGAAGACAGGGACTCTGTGGAGCAGACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197801 121 + 92844088 agcccctgAACCAGCGGATCACTCAAGTTTCTCCTTCTCT-AGTAACGCGTGGGTTTAAGTTCTAGTCAGTAGCAATTTTTCCAAAAGTCAGCTTGAGGACAGGGACTCTGTGGAGCAGAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87542820 121 - 96509753 AGCCCCTGAACCAGCGGATCACTCAAGTTTCTCCTTCTCT-AGTAACGCGTGGGTTTAAGTTCTAGTCAGTAGCAATTTTTCCAAAAGTCAGCTTGAGGACAGGGACTCTGTGGAGCAGAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7030942 121 - 13098629 agcccctgAACCAGCGGATCACTCAAGTTTCTCCTTCTCT-AGTAACGTGTGGGTTTAAGTTCTAGTCAGTAGCAATTTTTCCAAAAGTCAGCTTGAGGACAGGGACTCTGTGGAGCAGAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002694 121 - 4483953 agtccctgAACCAGCGGATCACTCAAGTTTCTCCTTCTCT-AGTAACGCGTGGGTTTAAGTTCTGGTCAGTAGCAATTTTTCCAAAAGTCAGCTTGAGGACAGGGACTCTGTGGAGCAGAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629091 121 + 33263144 AGTCCCTGAACCAGCGGATCACTCAAGTTTCTCCTTCTCT-AGTAACGCGTGGGTTTAAGTTCTGGTCAGTAGCAATTTTTCCAAAAGTCAGCTTGAGGACAGGGACTCTGTGGAGCAGAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899630 121 - 14338769 agtccctgAACCAGCGGATCACTCAAGTTTCTCCTTCTCT-AGTAAGGCGTGGGTTTAAGTTCTGGTCAGTAGCAATTTTTCCAAAAGTCAGCTTGAGGACAGGGACTCTGTGGGGCAGAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845271 121 + 1946073 AGTCCCTGAACCAGTGGATCAGTCAAGTTTCTCCTTCTCT-AGTATCGCGTGGGTTTAAGTTCTGGTCAGTAGCAGTTTTTCCAAAAGTCAGCTTGAGGACAGGGACTCTGTGGAGCAGAGA i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5636917 119 + 108171978 AGTCTCTAAACCAGCAGATCATTCAAGTTCCTCCTTCCCC-AGTTTCAGGTGGGTTTAAGTGCTGATCATTAGCAATTTTTC-AAAAGTCACCTTGAGGATA-GGACTCTGTGGAGTAGACA i micMur3.chr7 I 1070 I 1450 s proCoq1.NW_012136747v1 4997762 118 - 6317780 AGTCTCTAAACCAGCAGATCATTCAAGCTCCTCCTTCCCC-AGTAGCAGGTGGGTTTTAGTTCTGATCTTTAGCAATTTTTCAAAAAGTGACCTTGAGGACA-GGACTCCGTGGAGCAGA-- i proCoq1.NW_012136747v1 I 478 C 0 s otoGar3.GL873526 36250434 86 - 42659167 AGTCCCTCAACCAACAGA----TCAAGTTC------------------------------TTCTGGTCACTAGCAAATTTTGAAAAAGTCAGCTTGAGAACA-GGACTCTAT-GAGCAGACA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46046169 116 - 69331447 AGTCGCTGAACCAGCAGTTCACTTAAGTTTCTCCCTCCCTAAGTATCCTGTGGGTCTAAGTTCTGGTCATCAGCAACATCTCAAAAAGTCAG------GATAGGGACACTGTGGAGCAGACC i canFam3.chr10 C 0 C 0 e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=529799.000000 s hg38.chr22_GL383582v2_alt 11883 69 + 162811 CAGTTCTCATATGTCAAAGAACCGGGTTCTGCTTGGAAGCTGCTGCTAAGGA-AAGCCCTATAaataaca s panTro5.chr22 28768500 69 + 37823149 CAGTTCTCATATGTCAAAGAACCGGGTTCTGCTTGGAAGCTGCTGCTAAGGA-AAGCCCTATAaataaca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073436 69 + 50109623 CAGTTCTCATATGTCAAAGAACCGGGTTCTGCTTGGAAGCTGCTGCTAAGGA-AAGCCCTATAaataaca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045451 69 + 4464012 CAGTTCTCATATGTCAAAGAACCGGGTTCTGCTTGGAAGCTGCTGCTAAGGT-AAGCCCTATAaataaca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575273 69 - 115148730 CAGTTCTCATATGTCAAAGAACCGGGTTCTGCTTGGAAGCTGCTGCTAAGGT-AAGCCCTATAaataaca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197922 69 + 92844088 CGGTTCTCATATGTCAAAGAACCGGGTTCTGCTTGGAAGCTGCTGCTAAGGT-AAGCCCTATAAATAACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87542941 69 - 96509753 CGGTTCTCATATGTCAAAGAACCGGGTTCTGCTTGGAAGCTGCTGCTAAGGT-AAGCCCTATAAATAACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031063 69 - 13098629 CGGTTCTCATATGTCAAAGAACCGGGTTCTGCTTGGAAGCTGCTGCTAAGGT-AAGCCCTATAAATAACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002815 69 - 4483953 CGGTTCTCATATGTCAAAGAACTGGGTTCTGCTTGGAAGCTGCTGCTAAGGT-AAGCCCTATAAATAACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629212 69 + 33263144 CGGTTCTCATATGTCAAAGAACCGGGTTCTGCTTGGAAGCTGCTGCTAAGGT-AAGCCCTATAAATAACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899751 69 - 14338769 CGGTTCTCATATGTCAAAGAACTGGGTTCTGCTTGGAAGCTGCTGCTAAGGT-AAGCCCTATAAATAACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845392 69 + 1946073 CGGTTCTCAGATGTCAAAGAACCGGGTTCTGCTTGGAAGCTGCTGCTAAGGT-AAGCCCTATAAATAACA i colAng1.NW_012115588v1 C 0 C 0 s proCoq1.NW_012136747v1 4997880 69 - 6317780 CAGTTCTCACACATCAAAGAACTGGGTTCTGCAGAGAGACTCCTGCTAGGGT-AAGCCCTGTAAATAACA i proCoq1.NW_012136747v1 C 0 I 1052 s otoGar3.GL873526 36250520 68 - 42659167 TAGTTCTCACACATAAAATAAGTGCGCTCTAC--ATGGACTCCTGCTAGGGTAAAGGCCTATAAACAACA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46046285 54 - 69331447 --GTTCTCATACATCAAAAAGCTGGATTCTGCA-GGAGGCTCCCGCTA-------------TAAACAACA i canFam3.chr10 C 0 C 0 e micMur3.chr7 5637036 1450 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=27988.000000 s hg38.chr22_GL383582v2_alt 11952 4 + 162811 aaaa s panTro5.chr22 28768569 4 + 37823149 aaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073505 4 + 50109623 aaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045520 4 + 4464012 aaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575342 4 - 115148730 aaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197991 4 + 92844088 AAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87543010 4 - 96509753 AAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031132 4 - 13098629 AAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002884 4 - 4483953 AAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629281 4 + 33263144 AAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899820 4 - 14338769 AAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845461 4 + 1946073 AAAA i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36250588 4 - 42659167 ATAA i otoGar3.GL873526 C 0 I 231 s canFam3.chr10 46046339 4 - 69331447 ATAA i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=397693.000000 s hg38.chr22_GL383582v2_alt 11956 65 + 162811 ----taacaacaaaaacaacGGCAGCagctaatatttaatgagttaaatatgcatcaagtcctgttcta s panTro5.chr22 28768573 65 + 37823149 ----taacaacaaaaacaacGGCAGCagctaatatttaatgagttaaatatgcatcaagccctgttcta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073509 65 + 50109623 ----taacaacaaaaacaacGGCAGCagctaatatttaatgagttaaatatgcatcaagccctgttcta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045524 65 + 4464012 ----taacaacaaaaacaacGGCAGCagctaatatttaatgagttaaatatgcatcaagccctgttcta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575346 65 - 115148730 ----taacaacaaaaacaacGGCAGCagctaacatttaatgagttaaatatgcatcaagccctgttcta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84197995 65 + 92844088 ----TAACAACAAAAACAATGGCAGCagctaatatttaatgagttaaatatgcaccaagccctgttcta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87543014 65 - 96509753 ----TAACAACAAAAACAATGGCAGCagctaatatttaatgagttaaatatgcaccaagccctgttcta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031136 65 - 13098629 ----TAACAACAAAAACAATGGCAGCagctaatatttaatgagttaaatatgcaccaagccctgttcta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4002888 65 - 4483953 ----TAACAACAAAAACAATGGCAGCagctaatatttaatgagttaaatatgcaccaagccctgttcta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629285 65 + 33263144 ----TAACAACAAAAACAATGGCAGCagctaatatttaatgagttaaatatgcaccaagccctgttcta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899824 65 - 14338769 ----TAACAACAAAAACAATGGCAGCagctaatatttaatgagttaaatatgcaccaagccctgtttta i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845465 65 + 1946073 ----TAACAACAAAAACAATGGCAGCagctaatatttaatgagttaaatatgcaccaagccctgttcta i colAng1.NW_012115588v1 C 0 C 0 s canFam3.chr10 46046343 48 - 69331447 TTAATAACCATAAAAACAACAGTAGCA-CCAACATTCAAAGAGTG---------------Ccta----- i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36250592 231 - 42659167 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I e saiBol1.JH378157 8801454 1575 - 16357246 I e calJac3.chrUn_GL286373 1881246 4059 - 2117846 I a score=464531.000000 s hg38.chr22_GL383582v2_alt 12021 57 + 162811 agcactctagata-tttta---acttaa-tacagtaaccttctgaagaaggaattattattc--- s panTro5.chr22 28768638 57 + 37823149 agcactctagata-tttta---acttaa-tacagtaaccttctgaaaaaggaattattattc--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073574 57 + 50109623 agcactctagata-tttta---acttaa-tacagtaaccttctgaaaaaggaattattattc--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045589 57 + 4464012 agcactctagata-tttta---acttaa-tacagtaactttctgaagaaggaattattattc--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575411 57 - 115148730 agcactctagata-tttta---acttaa-tacagtaactttctgaagaacgaattattattc--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198060 58 + 92844088 agcactctagatattttta---acttaa-tacagtaactttctgaagaaggaattatcattc--- i rheMac8.chr10 C 0 I 323 s macFas5.chr10 87543079 58 - 96509753 agcactctagatattttta---acttaa-tacagtaactttctgaagaaggaattatcattc--- i macFas5.chr10 C 0 I 324 s macNem1.NW_012012688v1 7031201 57 - 13098629 agcactctagata-tttta---acttaa-tacagtaactttctgaagaaggaattatcattc--- i macNem1.NW_012012688v1 C 0 I 307 s cerAty1.NW_011999588v1 4002953 57 - 4483953 agcactctagata-tttta---acttaa-tacagtaactttctgaagaaggaattatcattc--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629350 57 + 33263144 agcactctagata-tttta---acttaa-tacagtaactttctgaagaaggaattatcattc--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899889 57 - 14338769 agcactctagata-tttta---acttaa-tacagtaactttctgaagaaggaattatcattc--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845530 57 + 1946073 agcactctagata-tttta---acttaa-tacagtaactttctgaagaaggaattatcattc--- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885305 57 - 2117846 agcactctagata-tttta---acttaa-tacagtaactttctgaagaaggcactattattc--- i calJac3.chrUn_GL286373 I 4059 C 0 s saiBol1.JH378157 8803029 57 - 16357246 agcactctagata-ttttc---acttaa-tacagtaactttctgaagaaggcactattattc--- i saiBol1.JH378157 I 1575 C 0 s canFam3.chr10 46046391 64 - 69331447 agcaaagtagata-tattacctatttaattagggccactctctgaagaaggtactatcatgatgc i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36250592 231 - 42659167 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I a score=315512.000000 s hg38.chr22_GL383582v2_alt 12078 43 + 162811 ccattttaaagatgaagaaactgaggaata----gatgaaataactg s panTro5.chr22 28768695 43 + 37823149 ccattttaaagatgaagaaactgaggaaca----gatgaaataactg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073631 43 + 50109623 ccattttaaagatgaagaaactgaggaaca----gatgaaataactg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045646 43 + 4464012 ccattttaaagatgaagaaactgaggaata----gatgaaataactg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575468 43 - 115148730 ccattttaaagatgaagaaactgaggaata----gatgaaataactg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198441 41 + 92844088 ccattttaaagatgaagaaac--aggaaca----gatgaaatacctc i rheMac8.chr10 I 323 C 0 s macFas5.chr10 87543461 41 - 96509753 ccattttaaagatgaagaaac--aggaaca----gatgaaatacctc i macFas5.chr10 I 324 C 0 s macNem1.NW_012012688v1 7031565 41 - 13098629 ccattttaaagatgaagaaac--aggaaca----gatgaaatacctc i macNem1.NW_012012688v1 I 307 C 0 s cerAty1.NW_011999588v1 4003010 41 - 4483953 ccattttaaagatgaagaaac--aggaaca----gatgaaatacctg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629407 41 + 33263144 ccattttaaagatgaagaaac--aggaaca----gatgaaatacctg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899946 41 - 14338769 ccattttaaagatgaagaaac--aggaaca----gatgaaatacctg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845587 41 + 1946073 ccattttaaagatgaagaaac--acgaaca----gatgaaataaccg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885362 43 - 2117846 ccattttaaagatgaggaaactgaggaaca----gattaaataactg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8803086 43 - 16357246 ccattttaaagatgagaaaactgaggaaca----gattaaataaccg i saiBol1.JH378157 C 0 C 0 s canFam3.chr10 46046455 47 - 69331447 tcatttcacagataaggaaattgaggcatagcaggatgaaatagttt i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36250592 231 - 42659167 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I a score=942353.000000 s hg38.chr22_GL383582v2_alt 12121 122 + 162811 gcccaaggtcacacagctag---ttgagg----------------gcagcgcctgaagaaaagtccgtgctcctaaccaccacattctaccgCCTTTT-----------------------------CACACACACAAGCAGGGACTCGACAGCC--------------------CTGAGGAGTGGCACC s panTro5.chr22 28768738 122 + 37823149 gcccaaggtcacacagctag---ttgagg----------------gcagcgcctgaagaaaagtccgtgctcctaaccaccacattctaccgCCTTTT-----------------------------CACACACACAAGCAGGGACTCGACAGCC--------------------CTGAGGAGTGGCACC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073674 122 + 50109623 gcccaaggtcacacagctag---ttgagg----------------gcagcgcctgaagaaaagtccgtgctcctaaccaccacattctaccgCCTTTT-----------------------------CACACACACAAGCAGGGACTCGACAGCC--------------------CTGAGGAGTGGCACC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045689 122 + 4464012 gcccaaggtcacacagctag---ttgagg----------------gcagcgcctgaagaaaagtccgtgctcctaaccaccacattctaccgCCTTTT-----------------------------CACACACACAAGCAGGGACTCGACAGCC--------------------CTGAGGAGTGGCACC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575511 122 - 115148730 gcccaaggtcacatagctag---ttgagg----------------gcagcgcctgaagaaaagtccgtgctcctaaccaccacattctaccgCCTTTT-----------------------------CACACACACAAGCAGGGACTGGACAGCC--------------------CTGAGGAGTGGCACC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198482 124 + 92844088 gcccaaagtcacatagctag---ttgagg----------------gcagcgcctggataaaagtccatgctcctaaccaccacattctaccgCCTCTT---------------------------CACACACACACAAGCAGGGACAAGACAGCC--------------------CTGAGGAGTGGCACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87543502 124 - 96509753 gcccaaagtcacatagctag---ttgagg----------------gcagcgcctggataaaagtccatgctcctaaccaccacattctaccgCCTCTT---------------------------CACACACACACAAGCAGGGACAAGACAGCC--------------------CTGAGGAGTGGCACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031606 124 - 13098629 gcccaaagtcacatagctag---ttgagg----------------gcagcgcctggataaaagtccatcctcctaaccaccacattctaccgCCTCTT---------------------------CACACACACACAAGCAGGGACAAGACAGCC--------------------CTGAGGAGTGGCACC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003051 120 - 4483953 gcccaaagtcacacagctag---ttgagg----------------gcagcgcctggataaaagtccatgctcctaaccaccacattctaccgCCTCTT-------------------------------CACACACAAGCAGGGACTCCACAGCC--------------------CTGAGGAGTGGCACC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629448 124 + 33263144 gcccaaagtcacatagctag---ctgagg----------------gcagcgcctggataaaagtccatgctcctaaccaccacattctaccgCCTCTT---------------------------CACACACACACAAGCAGGGACTCGACAGCC--------------------CTGAGGAGTGGCACC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13899987 124 - 14338769 gcccaaagtcacatagctag---ttgagg----------------gcagcgcctgaataaaagtccatgctcctaaccaccacattctaccgCCTCTT---------------------------CACACACACACAAGCAGGGACTCCACAGCC--------------------CTGAGGAGTGGCACC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845628 120 + 1946073 gcccaaactcacatagctag---ttgagg----------------gcagcgcctggataaaagttcatgctcctaaccaccacattctaccgCCTCTT-------------------------------CACACACAAGCAGGGACTCGACAGCC--------------------CTGAGGAGTGGCACC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885405 154 - 2117846 acccatggtcacacatctggtttttgagg----------------gcagcacctggagaaaagtccatgctcctaaccaccacattctacCACTTTTcacacacacacacacacacacacacacacacacacacacacgcaGGGACTTGACAGCT--------------------CTGAGGAGTGCCACC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8803129 124 - 16357246 acccatggtcacagatctggtttttgagg----------------gcagcacctggagaaaagtccatgctcctaaccagcacattctaccgCTTTT------------------------------CACATACACATGCAGTGACTTGACAGCT--------------------CTGAGGAGTGCCACC i saiBol1.JH378157 C 0 C 0 s otoGar3.GL873526 36250823 150 - 42659167 acccagggggaca-----gc---ttgaggctctgtctcaaaaaaaagagaGCCTGGAGAAAAGTTCATGTTCCTAAGCACCACATTCCACTGCCTGTC--------------------------------ACATACAGGTAGGGAAGTAGCAGCCATGAGAGATGCTCGCAGGGGCTGGGGTGGGGAACC i otoGar3.GL873526 I 231 I 220 s canFam3.chr10 46046502 111 - 69331447 ggttaaggtcatagggctaa------ggg----------------gcaaggtctggaGGCAAGGCTCGG----TGACCACCTCCTCGTATTGCTTTTC--------------------------------ATATACAGGCAGGGAGGTGGCGGCG--------------------C-AAGGGGAGCCAGG i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I a score=276496.000000 s hg38.chr22_GL383582v2_alt 12243 33 + 162811 GTGCTCCAGCTCACTCAAAAACACCTCTTTCTC s panTro5.chr22 28768860 33 + 37823149 GTGCTCCAGCTCACTCAAAAACACCTCTTTCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073796 33 + 50109623 GTGCTCCAGCTCACTCAAAAACACCTCTTTCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045811 33 + 4464012 GTGCTCCAGCTCACTCAAAAACACCTCTTTCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575633 33 - 115148730 GTGCTCCAGCTCACTCAAAAACACCTCTTTCTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198606 33 + 92844088 ATGCTCCAGCTCACTCAAAAACACCTCTTTCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87543626 33 - 96509753 ATGCTCCAGCTCACTCAAAAACACCTCTTTCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031730 33 - 13098629 ATGCTCCAGCTCACTCAAAAACACCTCTTTCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003171 33 - 4483953 ATGCTCCAGCTCACTCAAAAACACCTCTTTCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629572 33 + 33263144 ATGCTCCAGCTCACTCAAAAACACCTCTTTCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900111 33 - 14338769 ATGCTCCAGCTCACTCAAAAACACCTCTTTCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845748 33 + 1946073 ATGCTCCAGCTCACTCAAAAACACCTCTTtctc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885559 33 - 2117846 ATGGTCCAGCTCACTCCAAAACACCTCTTTCTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8803253 33 - 16357246 ATGCTCCAGCTCACTCCAAAACATCTCCTTCTC i saiBol1.JH378157 C 0 I 1303 s canFam3.chr10 46046613 19 - 69331447 GTGCTCTAGCT--------------TCCCTCTC i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36250973 220 - 42659167 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I a score=3102.000000 s hg38.chr22_GL383582v2_alt 12276 1 + 162811 g s panTro5.chr22 28768893 1 + 37823149 g i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073829 1 + 50109623 g i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045844 1 + 4464012 g i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575666 1 - 115148730 g i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198639 1 + 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87543659 1 - 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031763 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003204 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629605 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900144 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845781 1 + 1946073 a i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885592 1 - 2117846 A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8804589 1 - 16357246 g i saiBol1.JH378157 I 1303 C 0 s canFam3.chr10 46046632 1 - 69331447 A i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36250973 220 - 42659167 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I e cebCap1.NW_016107750v1 1274571 1647 - 1807191 I a score=18975.000000 s hg38.chr22_GL383582v2_alt 12277 3 + 162811 cac s panTro5.chr22 28768894 3 + 37823149 cac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073830 3 + 50109623 cac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045845 3 + 4464012 cac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575667 3 - 115148730 cac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198640 3 + 92844088 AGc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87543660 3 - 96509753 AGc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031764 3 - 13098629 CGc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003205 3 - 4483953 CGc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629606 3 + 33263144 CGc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900145 3 - 14338769 CGc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845782 3 + 1946073 cac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885593 3 - 2117846 GAC i calJac3.chrUn_GL286373 C 0 I 61 s saiBol1.JH378157 8804590 3 - 16357246 cac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276218 3 - 1807191 cac i cebCap1.NW_016107750v1 I 1647 C 0 s canFam3.chr10 46046633 3 - 69331447 CAC i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36250973 220 - 42659167 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I a score=9555.000000 s hg38.chr22_GL383582v2_alt 12280 1 + 162811 t s panTro5.chr22 28768897 1 + 37823149 t i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073833 1 + 50109623 t i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045848 1 + 4464012 t i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575670 1 - 115148730 t i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198643 1 + 92844088 t i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87543663 1 - 96509753 t i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031767 1 - 13098629 t i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003208 1 - 4483953 t i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629609 1 + 33263144 t i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900148 1 - 14338769 t i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845785 1 + 1946073 t i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8804593 1 - 16357246 t i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276221 1 - 1807191 t i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46046636 1 - 69331447 T i canFam3.chr10 C 0 I 132 e otoGar3.GL873526 36250973 220 - 42659167 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I e calJac3.chrUn_GL286373 1885596 61 - 2117846 I a score=413114.000000 s hg38.chr22_GL383582v2_alt 12281 53 + 162811 ttgggaggccgagacgggcggatcac--gaggtcaggagatcgagaccattctgg s panTro5.chr22 28768898 53 + 37823149 ttgggaggccgagacgggcggatcac--gaggtcaggagatcgagaccattctgg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073834 53 + 50109623 ttgggaggccgagacgggcggatcac--gaggtcaggagatcgagaccattctgg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045849 53 + 4464012 ttgggaggccgagacgggcggatcac--gaggtcaggagatcgagaccattctgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575671 53 - 115148730 ttgggaggccgagacggacggatcac--gaggtcaggagatcgagaccatcctgg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198644 53 + 92844088 tcgggaggccaagacgggcggatcac--gaggtcaggagatcgagaccatcctgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87543664 53 - 96509753 tcgggaggccaagacgggcggatcac--gaggtcaggagatcgagaccatcctgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031768 53 - 13098629 tcgggaggccaagacgggcggatcac--gaggtcaggagatcgagaccatcctgg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003209 53 - 4483953 tcgggaggccaagacgggcggatcac--gaggtcaggagatcgagaccatcctgg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629610 53 + 33263144 tcgggaggccaagacgggcggatcac--gaggtcaggagatcgagaccatcctgg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900149 53 - 14338769 tcgggaggccaagacgggcggatcac--gaggtcaggagatcgagaccatcctgg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845786 53 + 1946073 tcgggaggccaagatggacggatcac--gaggtcaggagatcgagaccatcctgg i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8804594 55 - 16357246 ttgagaggccaaggcgggcagatcacctgaggtccggagttcgagaccagcctgg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276222 55 - 1807191 ttgggaggccaaggcgggcagatcacttgaggtcaggagttcgagaccagcctgg i cebCap1.NW_016107750v1 C 0 C 0 e canFam3.chr10 46046637 132 - 69331447 I e otoGar3.GL873526 36250973 220 - 42659167 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I e calJac3.chrUn_GL286373 1885596 61 - 2117846 I a score=61940.000000 s hg38.chr22_GL383582v2_alt 12334 7 + 162811 ctaacac s panTro5.chr22 28768951 7 + 37823149 ctaacac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073887 7 + 50109623 ctaacac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045902 7 + 4464012 ctaacac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575724 7 - 115148730 ctaacac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198697 7 + 92844088 ctaacac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87543717 7 - 96509753 ctaacac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031821 7 - 13098629 ctaacac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003262 7 - 4483953 ctaacac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629663 7 + 33263144 ctaacac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900202 7 - 14338769 ctaacac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 845839 7 + 1946073 ctaacac i colAng1.NW_012115588v1 C 0 I 508 s calJac3.chrUn_GL286373 1885657 7 - 2117846 ccaacat i calJac3.chrUn_GL286373 I 61 C 0 s saiBol1.JH378157 8804649 7 - 16357246 ccaacat i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276277 7 - 1807191 ccaacac i cebCap1.NW_016107750v1 C 0 C 0 e canFam3.chr10 46046637 132 - 69331447 I e otoGar3.GL873526 36250973 220 - 42659167 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I a score=173730.000000 s hg38.chr22_GL383582v2_alt 12341 21 + 162811 ggtgaaatcccgtctctac--ta s panTro5.chr22 28768958 21 + 37823149 ggtgaaatcccgtctctac--ta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073894 21 + 50109623 ggtgaaatcccgtctctac--ta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045909 21 + 4464012 ggtgaaatcccgcctctac--ta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575731 21 - 115148730 ggtgaaaccccgtctctac--ta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198704 21 + 92844088 ggtgaaacccagtctctac--ta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87543724 21 - 96509753 ggtgaaacccagtctctac--ta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031828 21 - 13098629 ggtgaaacccagtctctac--ta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003269 21 - 4483953 ggtgaaaccccgtctctac--ta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629670 21 + 33263144 ggtgaaaccccgtctctac--ta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900209 21 - 14338769 ggtgaaaccccgtctctac--ta i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 846354 21 + 1946073 ggtcaaatcccatctctac--ta i colAng1.NW_012115588v1 I 508 C 0 s calJac3.chrUn_GL286373 1885664 21 - 2117846 ggtgaaaccctgtctctac--ta i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8804656 23 - 16357246 gatgaaatcctgtctctactata i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276284 21 - 1807191 catgaaaccccgtctctac--ta i cebCap1.NW_016107750v1 C 0 C 0 e canFam3.chr10 46046637 132 - 69331447 I e otoGar3.GL873526 36250973 220 - 42659167 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I a score=301018.000000 s hg38.chr22_GL383582v2_alt 12362 48 + 162811 aaaatacaaaaaaaaa-----tggccggcgtggtggcgggcgcctgtaatccc s panTro5.chr22 28768979 52 + 37823149 aaaatacaaaaaaaaaa-aaatggccggcgtggtggcgggcgcctgtaatccc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073915 52 + 50109623 aaaatacaaaaaaaaaa-aaatggccggcgtggtggcgggcgcctgtaatccc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045930 51 + 4464012 aaaatacacacaaaaa--atatgcccggcgtggtggcgggcgcctgtaatccc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575752 49 - 115148730 aaaatacaaaaaaatt----acgcccggcgtggtggcgggcgcctgtaatccc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198725 48 + 92844088 aaaatacaaaaacata-----tgccgggcgtggtggggggcccctgtaatccc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87543745 48 - 96509753 aaaatacaaaaacata-----tgccgggcgtggtggggggcccctgtaatccc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031849 48 - 13098629 aaaatacaaaaacata-----tgccgggcgtggtggggggcccctgtaatccc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003290 48 - 4483953 aaaatacaaaaacata-----tgccgggcgtggtggcgggcgcctgtaatccc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629691 48 + 33263144 aaaatacaaaaacata-----tgccgggcgtggtggcgggcgcctgtaatccc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900230 48 - 14338769 aaaatacaaaaacata-----tgccgggcgtggtggcgggcgcctgtaatccc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 846375 46 + 1946073 aagatacaaaa--att-----agcccggcgtgctagcgaacgcctgtagtccc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885685 46 - 2117846 aaaatacaaaa--att-----agctggccacggtggtgcacgcctgtagtctc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8804679 46 - 16357246 aaaatacaaaa--att-----agcccggtgtgctggcgcacgcctgtagtccc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276305 46 - 1807191 aaaatacaaaa--att-----agcccggtgtgcttgcacatgcctgtagtccc i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36251193 51 - 42659167 AAATCACAAAAATAAAATTGTAgctgggcac--tggcaggtccctgtagtctc i otoGar3.GL873526 I 220 C 0 e canFam3.chr10 46046637 132 - 69331447 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I a score=649651.000000 s hg38.chr22_GL383582v2_alt 12410 85 + 162811 agctattcgggaggctgag------gctgaggcaggagaatgacg----tgaatccgggaggcggagcttgcagtgagccgagatcgcaccactg s panTro5.chr22 28769031 85 + 37823149 agctattcgggaggctgag------gctgaggcaggagaatgacg----tgaatccgggaggcggagcttgcagtgagccgagatcgcaccactg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41073967 85 + 50109623 agctattccggaggctgag------gctgaggcaggagaatgacg----tgaatccgggaggcggagcttgcagtgagccgagatcgcaccactg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3045981 91 + 4464012 agctattcgggaggctgaggctgaagctgaggcaggagaatgacg----tgaatccgggaggctgagcttgcagtgagccgagatcgcaccactg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575801 85 - 115148730 agctattcgggaggctgag------gctgaggcaggagaatggcg----tgaatccgggaggcggagcttgcagtgagccgagatcgcaccactg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198773 79 + 92844088 agctactcgggag------------actgaggcaggagaatggcg----agaacccaggaggcggggcttgcagtgagccgagatcgcaccactg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87543793 79 - 96509753 agctactcgggag------------actgaggcaggagaatggcg----agaacccaggaggcggggcttgcagtgagccgagatcgcaccactg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031897 79 - 13098629 agctactcgggag------------actgaggcaggagaatggcg----agaacccaggaggcggggcttgcagtgagccgagatcgcaccactg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003338 79 - 4483953 agctactcgggag------------actgaggcaggagcatggcg----agaacccaggaggcggggcttgcagtgagccgagatcgcaccactg i cerAty1.NW_011999588v1 C 0 I 363 s chlSab2.chr19 24629739 79 + 33263144 agctactcgggag------------actgaggcaggagaatggcg----agaacccaggaggcggggcttgcagtgagccgagatcgcaccactg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900278 79 - 14338769 agctacttgggag------------actgaggcaggagcatggcg----agaacccaggaggcggggcttgcagtgagccgagatcgcaccactg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 846421 79 + 1946073 agctactcgggag------------gctgaggtaggagaatcgct----tgaacgcaggaggcagaggttgcagtgagccgagatcgtgccactt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885731 76 - 2117846 acctac---agag------------gctgaggcaggagagttgat----tgaacccaggaggcggacgttgcagtgagcagaaatcgggccacta i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8804725 79 - 16357246 agatactcgaaag------------gctgaggcaggataatctct----tgaactcaggaggtggaggctgcagtgagccgagatcgtgccactg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276351 79 - 1807191 agatactcgagag------------gctgaggcaggatgatctct----tgaactcaggaggtggaggctgcagtgagccgagatcgtgccactg i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36251244 74 - 42659167 tgctactcaggag------------gctgaggcaggaggatcact----tgaacccaggagtttgaggttgctatgagctaa-----ccccaagg i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46046769 84 - 69331447 AGCTTTCAGGGGG--AAAT------GCCAAGATAGGAAAACGGCATCTCTGCACCCAGGGAGCGGCG---GCAGGGGAGCGGGAGGAGCCCACCT i canFam3.chr10 I 132 C 0 e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I a score=67079.000000 s hg38.chr22_GL383582v2_alt 12495 9 + 162811 cactccagc s panTro5.chr22 28769116 9 + 37823149 cactccagc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074052 9 + 50109623 cactccagc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046072 9 + 4464012 cactccagc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575886 9 - 115148730 cactccagc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198852 9 + 92844088 cgctccagc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87543872 9 - 96509753 cgctccagc i macFas5.chr10 C 0 I 347 s macNem1.NW_012012688v1 7031976 9 - 13098629 cgctccagc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003780 9 - 4483953 cactccagg i cerAty1.NW_011999588v1 I 363 C 0 s chlSab2.chr19 24629818 9 + 33263144 cgctgcagc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900357 8 - 14338769 c-ctccagc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 846500 9 + 1946073 cactccagg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885807 9 - 2117846 gactccagc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8804804 9 - 16357246 cgctccagc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276430 9 - 1807191 cgctccagc i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36251318 9 - 42659167 cactctaga i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46046853 8 - 69331447 CACCCGGA- i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I a score=32826.000000 s hg38.chr22_GL383582v2_alt 12504 3 + 162811 ctg s panTro5.chr22 28769125 3 + 37823149 ctg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074061 3 + 50109623 ctg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046081 3 + 4464012 ctg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575895 3 - 115148730 ctg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198861 3 + 92844088 ctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544228 3 - 96509753 ctg i macFas5.chr10 I 347 C 0 s macNem1.NW_012012688v1 7031985 3 - 13098629 ctg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003789 3 - 4483953 ctg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629827 3 + 33263144 ctg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900365 3 - 14338769 ctg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 846509 3 + 1946073 ctg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885816 3 - 2117846 ctg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8804813 3 - 16357246 ctc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276439 3 - 1807191 ctc i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36251327 3 - 42659167 ctg i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46046861 3 - 69331447 CTG i canFam3.chr10 C 0 I 77 e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I a score=3423.000000 s hg38.chr22_GL383582v2_alt 12507 1 + 162811 a s panTro5.chr22 28769128 1 + 37823149 a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074064 1 + 50109623 a i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046084 1 + 4464012 a i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575898 1 - 115148730 a i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84198864 1 + 92844088 a i rheMac8.chr10 C 0 I 347 s macFas5.chr10 87544231 1 - 96509753 g i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7031988 1 - 13098629 a i macNem1.NW_012012688v1 C 0 I 347 s cerAty1.NW_011999588v1 4003792 1 - 4483953 g i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629830 1 + 33263144 a i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900368 1 - 14338769 a i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 846512 1 + 1946073 g i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885819 1 - 2117846 g i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8804816 1 - 16357246 g i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276442 1 - 1807191 g i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36251330 1 - 42659167 g i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46046864 77 - 69331447 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I a score=20238.000000 s hg38.chr22_GL383582v2_alt 12508 3 + 162811 gcg s panTro5.chr22 28769129 3 + 37823149 gcg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074065 3 + 50109623 gcg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046085 3 + 4464012 gcg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575899 3 - 115148730 gcg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199212 3 + 92844088 gct i rheMac8.chr10 I 347 C 0 s macFas5.chr10 87544232 3 - 96509753 gct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7032336 3 - 13098629 gct i macNem1.NW_012012688v1 I 347 C 0 s cerAty1.NW_011999588v1 4003793 3 - 4483953 gct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24629831 3 + 33263144 gca i chlSab2.chr19 C 0 I 363 s manLeu1.NW_012102031v1 13900369 3 - 14338769 gca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 846513 3 + 1946073 gct i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885820 3 - 2117846 gca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8804817 3 - 16357246 gcg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276443 3 - 1807191 gcg i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36251331 3 - 42659167 gca i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46046864 77 - 69331447 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I a score=123292.000000 s hg38.chr22_GL383582v2_alt 12511 13 + 162811 acacagcgagact s panTro5.chr22 28769132 13 + 37823149 acacagcgagact i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074068 13 + 50109623 acacagcgagact i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046088 13 + 4464012 acacagcgagact i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575902 13 - 115148730 acacagcaagact i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199215 13 + 92844088 acacagcgagact i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544235 13 - 96509753 acacagcgagact i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7032339 13 - 13098629 acacagcgagact i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003796 13 - 4483953 acacagcgagact i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630197 13 + 33263144 acacagcgagact i chlSab2.chr19 I 363 C 0 s manLeu1.NW_012102031v1 13900372 13 - 14338769 acagagcgagact i manLeu1.NW_012102031v1 C 0 I 382 s colAng1.NW_012115588v1 846516 13 + 1946073 acactgcgagact i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885823 13 - 2117846 gcagagcaagact i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8804820 13 - 16357246 acagagtgagact i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276446 13 - 1807191 acagagtgagact i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36251334 13 - 42659167 acagagtgagact i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46046864 77 - 69331447 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I a score=72832.000000 s hg38.chr22_GL383582v2_alt 12524 14 + 162811 ctgtcac--aaacaaa s panTro5.chr22 28769145 14 + 37823149 ctgtcac--aaacaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074081 14 + 50109623 ctgtcac--aaacaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046101 13 + 4464012 ctgtcac--aaac-aa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575915 9 - 115148730 ctgtcac-------aa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199228 14 + 92844088 ctgtcac--aaacaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544248 14 - 96509753 ctgtcac--aaacaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7032352 14 - 13098629 ctgtcac--aaacaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003809 14 - 4483953 ctgtcac--aaacaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630210 14 + 33263144 ctgtcac--aaacaaa i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 846529 12 + 1946073 --ctcac--aaacaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1885836 13 - 2117846 c-ctctc--aaaaaaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8804833 14 - 16357246 cggtttc--aaacaaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276459 14 - 1807191 cagtttc--aaacaaa i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36251347 14 - 42659167 --gtctccaaaacaaa i otoGar3.GL873526 C 0 I 1126 e canFam3.chr10 46046864 77 - 69331447 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I e manLeu1.NW_012102031v1 13900385 382 - 14338769 I a score=5088.000000 s hg38.chr22_GL383582v2_alt 12538 1 + 162811 a s panTro5.chr22 28769159 1 + 37823149 a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074095 1 + 50109623 a i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046114 1 + 4464012 a i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575924 1 - 115148730 a i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199242 1 + 92844088 a i rheMac8.chr10 C 0 I 4 s macFas5.chr10 87544262 1 - 96509753 a i macFas5.chr10 C 0 I 4 s macNem1.NW_012012688v1 7032366 1 - 13098629 a i macNem1.NW_012012688v1 C 0 I 4 s cerAty1.NW_011999588v1 4003823 1 - 4483953 a i cerAty1.NW_011999588v1 C 0 I 4 s chlSab2.chr19 24630224 1 + 33263144 a i chlSab2.chr19 C 0 I 4 s colAng1.NW_012115588v1 846541 1 + 1946073 a i colAng1.NW_012115588v1 C 0 I 4 s calJac3.chrUn_GL286373 1885849 1 - 2117846 a i calJac3.chrUn_GL286373 C 0 I 2216 s saiBol1.JH378157 8804847 1 - 16357246 g i saiBol1.JH378157 C 0 I 3 s cebCap1.NW_016107750v1 1276473 1 - 1807191 c i cebCap1.NW_016107750v1 C 0 I 7 s otoGar3.GL873526 36252487 1 - 42659167 A i otoGar3.GL873526 I 1126 C 0 e canFam3.chr10 46046864 77 - 69331447 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I e manLeu1.NW_012102031v1 13900385 382 - 14338769 I a score=472909.000000 s hg38.chr22_GL383582v2_alt 12539 51 + 162811 aaaTCCAACGGGCATCTATAATTACACTCTGCAACTCTagactttgggttc s panTro5.chr22 28769160 51 + 37823149 aaaTCCAACGGGCATCTATAATTACACTctgcaactctagactttgggttc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074096 51 + 50109623 aaaTCCAACGGGCATCTATAATTACACTctgcaactctagactttgggttc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046115 51 + 4464012 aaaTCCAACGGGCATCTATAATTACACTctgcaactctagactttgggttc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575925 51 - 115148730 aaaTCCAACAGGCATCTATAATTACactctgcaactctagactttgggttc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199247 50 + 92844088 aaaTCCAACGGGCATCTA-AATTACACTctgcaactctagactttgggttc i rheMac8.chr10 I 4 C 0 s macFas5.chr10 87544267 50 - 96509753 aaaTCCAACGGGCATCTA-AATTACactctgcaactctagactttgggttc i macFas5.chr10 I 4 C 0 s macNem1.NW_012012688v1 7032371 50 - 13098629 aaaTCCAACGGGCATCTA-AATTACACTctgcaactctagactttgggttc i macNem1.NW_012012688v1 I 4 C 0 s cerAty1.NW_011999588v1 4003828 50 - 4483953 aaaTCCAACGGGCATCTA-AATTACactctgcaactctagactttgggttc i cerAty1.NW_011999588v1 I 4 C 0 s chlSab2.chr19 24630229 50 + 33263144 aaaTCCAACGGGCATCTA-AATTACactctgcaactctagactttgggttc i chlSab2.chr19 I 4 C 0 s manLeu1.NW_012102031v1 13900767 50 - 14338769 aaaTCCAACGGGCATCTA-AATTACactctgcaactctagactttgggttc i manLeu1.NW_012102031v1 I 382 C 0 s colAng1.NW_012115588v1 846546 50 + 1946073 aaaTCCAACGGGCATCTA-AATTACACTctgcaactctagactttgggttc i colAng1.NW_012115588v1 I 4 C 0 s calJac3.chrUn_GL286373 1888066 51 - 2117846 AAATCTAACGGGCATCTGTAATCATactctgcaactctagactgtgggttc i calJac3.chrUn_GL286373 I 2216 C 0 s saiBol1.JH378157 8804851 51 - 16357246 aaaTCTAACGGGCATCTGTAATCATACTCTGCAACTCTAGACttcgcgttc i saiBol1.JH378157 I 3 C 0 s cebCap1.NW_016107750v1 1276481 51 - 1807191 aaaTCTAACGGGCATCTGTAATCATactctgcagctccagacttggggttc i cebCap1.NW_016107750v1 I 7 C 0 s otoGar3.GL873526 36252488 48 - 42659167 AAACCTACCGGGCGTCTGTAAATACATTCTG-AACTCCAGACTTT--GTTT i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46046864 77 - 69331447 I e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I a score=1143504.000000 s hg38.chr22_GL383582v2_alt 12590 114 + 162811 tgggtacaacagtggctcggcctgggccct--gggcacatcacttcacctctcggtgcctccgctgcctcacccacaaagtgagTGTGTCACTGACAGTCATCGTCCTCCCGCCAA--------------- s panTro5.chr22 28769211 114 + 37823149 tgggtacaacagtggctcggcctgggccct--gggcacatcacttcacctctcggtgcctccgctgcctcacccacaaagtgagTGTGTCACTGACAGTCATCGTCCTCCCGCCAA--------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074147 114 + 50109623 tgggtacaacagtggctcggcctgggccct--gggcacatcacttcacctctcggtgcctccgctgcctcacccacaaagtgagTGTGTCACTGACAGTCATCGTCCTCCCGCCAA--------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046166 114 + 4464012 tgggtacaacagtggctcggcctgggccct--gggcacatcacttcacctctcggtgcctccgctgcctcacccacaaagtgagTGTGTCACTGACAGTCATCGTCCTCCCGCCAA--------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106575976 114 - 115148730 tgggtacaccagtggctcggcctgggccct--gggcacatcacttcgcctctcggtacctccgctgcctcacccacaaagtgagtgtgtCACTGACAGTCATCGTCCTCCCGCCAA--------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199297 112 + 92844088 caggtacaccagtggctcggcctgggccct--gggcacatcacttcgcctctcggtgcctccgctgcctcacc--caaagtgagTGTGTCACTGACAGTCCTCGTCCTCCTGCCAA--------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544317 114 - 96509753 caggtacaccagtggctcggcctgggccct--gggcacatcacttcgcctctcggtgcctccgctgcctcacccacaaagtgagTGTGTCACTGACAGTCCTCGTCCTCCTGCCAA--------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7032421 114 - 13098629 caggtacaccagtggctcggcctgggccct--gggcacatcacttcgcctctcggtgcctccgctgcctcacccacaaagtgagTGTGTCACTGACAGTCCTCGTCCTCCTGCCAA--------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003878 114 - 4483953 caggtacaccagtggctcggcctgggccct--gggcacatcacttcgcctctcggtgcctccgctgcctcacccacaaagtgagTGTGTCACTGACAGTCCTCGTCCTCCTGCCAA--------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630279 114 + 33263144 caggtacaccagtggctcggcctgggccct--gggcacatcacttcgcctctcggtgcctccgctgcctcacccacaaagtgagTGTGTCACTGACAGTCCTCGTCCTCTTGCCAA--------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900817 114 - 14338769 caggtacaccagtggctcggcctgggccct--gggcacatcacttcgcctctcggtgcctccgctgcctcacccacaaagtgagTGTGTCACTGACAGTCCTCGTCCTCCTGCCAA--------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 846596 114 + 1946073 caggtacaccagtggctcggcctgggccct--gggcacatcacttcgcctctcggtgcctccgctgcctcacccacaaagtgagTGTGTCACTGACAGTCCTCGTCCTTCTGCCAA--------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888117 114 - 2117846 caggtacaccagtggctcggtctgggccca--gggcacaccacttcgcctctccgtgcctccgctgcctcacctacaaaataaCTGTGTCACTGACAGTCCTCGTCCTCCCGCCCA--------------- i calJac3.chrUn_GL286373 C 0 I 15 s saiBol1.JH378157 8804902 114 - 16357246 caggtacaccagtggctctgtctgggtgca--gggcacaccacttcgcctctccgtgcctccgctgcctcacctacaaaataaCTGTGTCTCTGACAGTCCTCGTCCTCCCGCCCA--------------- i saiBol1.JH378157 C 0 I 15 s cebCap1.NW_016107750v1 1276532 114 - 1807191 caggtacaccagtggctcggtttgggccca--gggcacaccacttcgcctctccgtgcctccgctgcctcacctacaaaataaCTGTGTCACTGACAGTCCTCGTCCTCCCGCCCA--------------- i cebCap1.NW_016107750v1 C 0 I 21 s otoGar3.GL873526 36252536 111 - 42659167 CACATCCAC--GAGGCT-AATCTGggcttt--gagcacatcacttcgcctctcggggcctcagctgcctcacctacaaaatgagTATGTCATTGACAGTCCTCTGTCCTCTGTAAG--------------- i otoGar3.GL873526 C 0 I 2 s canFam3.chr10 46046941 121 - 69331447 tgtgggaaacagatgatc-gcttaagtccTACGGGGGCATCCCTTCGCCTCCAGG---------TGCCTCACCTATAAAATGAGCACGTCACCCACCGTCCCTGTTCTCCCTCCGAGGGCTCTGCTAAGAA i canFam3.chr10 I 77 C 0 e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I a score=60166.000000 s hg38.chr22_GL383582v2_alt 12704 7 + 162811 TTGCGAA s panTro5.chr22 28769325 7 + 37823149 TTGCGAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074261 7 + 50109623 TTGCGAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046280 7 + 4464012 TTGCGAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576090 7 - 115148730 TTGCGAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199409 7 + 92844088 TTGCGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544431 7 - 96509753 TTGCGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7032535 7 - 13098629 TTGCGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003992 7 - 4483953 TTGCGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630393 7 + 33263144 TTGCGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900931 7 - 14338769 TTGCGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 846710 7 + 1946073 TTGCGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888246 7 - 2117846 CTACGAG i calJac3.chrUn_GL286373 I 15 C 0 s saiBol1.JH378157 8805031 7 - 16357246 CTACGGG i saiBol1.JH378157 I 15 C 0 s otoGar3.GL873526 36252649 7 - 42659167 TTATGGG i otoGar3.GL873526 I 2 C 0 s canFam3.chr10 46047062 7 - 69331447 TTACGGG i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I e cebCap1.NW_016107750v1 1276646 21 - 1807191 I a score=209384.000000 s hg38.chr22_GL383582v2_alt 12711 30 + 162811 -GGACAAAAGAGACCAAAGCTCCGATAGCA-C--------- s panTro5.chr22 28769332 30 + 37823149 -GGACAAAAGAGACCAAAGCTCCGATAGCA-C--------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074268 30 + 50109623 -GGACAAAAGAGACCAAAGCTCCGATAGCA-C--------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046287 30 + 4464012 -GGACAAAAGAGACCAAAGCTCCGATAGCA-C--------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576097 28 - 115148730 -GGAC--AAGAGACCAAAGCTCCGAGGGCA-C--------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199416 26 + 92844088 -GGACAA-----ACCAAAGCTCCGAGGGCACC--------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544438 26 - 96509753 -GGACAA-----ACCAAAGCTCCGAGGGCACC--------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7032542 26 - 13098629 -GGACAA-----ACCAAAGCTCCGAGGGCACC--------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4003999 31 - 4483953 -GGACAAAACAGACCAAAGCTCCGAGGGCACC--------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630400 31 + 33263144 -GGACAAAACAGACCAAAGCTCCGAGGGCACC--------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900938 31 - 14338769 -GGACAAAACAGACCAAAGCTCCGAGGGCACC--------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 846717 31 + 1946073 -GGACAAAACAGACCAAAGCTCCGAGGGCGCC--------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888253 31 - 2117846 -GGACAAAAGAAACCAAAGCTCCGAAGGCGTC--------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805038 31 - 16357246 -GGACAAAAGAAATCAAAGCTCCGAAGGCGCC--------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276667 31 - 1807191 -GGACAAAAGAAATCAAAGCTCCGAAGGCGCC--------- i cebCap1.NW_016107750v1 I 21 C 0 s otoGar3.GL873526 36252656 29 - 42659167 -GGACCAAAGACACCAAAAGGCCGAGGACT----------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46047069 40 - 69331447 GGGACAA-ACGGGCCAAAGCGCCCCGGACGCCTGGAAGCGC i canFam3.chr10 C 0 I 1 e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I e micMur3.chr7 5637036 1450 + 108171978 I a score=73155.000000 s hg38.chr22_GL383582v2_alt 12741 6 + 162811 GTACGA s panTro5.chr22 28769362 6 + 37823149 GTACGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074298 6 + 50109623 GTACGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046317 6 + 4464012 GTACGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576125 6 - 115148730 GTACGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199442 6 + 92844088 GTACGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544464 6 - 96509753 GTACGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7032568 6 - 13098629 GTACGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004030 6 - 4483953 GTACGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630431 6 + 33263144 GTACGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900969 6 - 14338769 GTACGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 846748 6 + 1946073 GTACGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888284 6 - 2117846 GTACGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805069 6 - 16357246 GTACGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276698 6 - 1807191 GTACGG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5638486 6 + 108171978 GTACGG i micMur3.chr7 I 1450 C 0 s otoGar3.GL873526 36252685 6 - 42659167 GTACGG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46047110 6 - 69331447 GTTCAG i canFam3.chr10 I 1 C 0 e proCoq1.NW_012136747v1 4997949 1052 - 6317780 I a score=4270341.000000 s hg38.chr22_GL383582v2_alt 12747 347 + 162811 ATGCTAGGCACGGCCGGTCTGA-CCACCGCGC-CGCCGCCAG--GTCCGGCCCATGGT-AGGCTCGGGTGACCCTCTTCCCCTGAAGCACCCGCAGTCGCCTCTGCCCAAGTTGGTGACCTCAGCTGGGCCC----ATGAGAAACCCC-GGCCGGGCCGGCTACGACCTTGAGCGGCGGCCTCCGGGTCCCCACGTAAGCCGCTACCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACCCTCCGCTTGGCCTCGTTCATGTCCCGACTGAAAATGGGCTTCACGAAGGTGCTGGCGGTAGAAGTAGCTTGGCGGACGCCGCTCCCCGCCATCTTGC s panTro5.chr22 28769368 347 + 37823149 ATGCTAGGCACGGCCGGTCTGA-TCACCGCGC-CGCCGCCAG--GTCCGGCCCATGGT-AGGCTCGGGTGACCCTCTTCCCCTGAAGCACCCGCAGTCGCCTCTGCCCAAGTTGGTGACCTCAGCTCGGCCC----ATGAGAAACCCC-GGCCGGGCCGGCTACGACCTTGAGCGGCGGCCTCCGGGTCCCCACGTAAGCCGCTACCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACCCTCCGCTTGGCCTCGTTCATGTCCCGACTGAAAATGGGCTTCACGAAGGTGCTGGCGGTAGAAGTAGCTTGGCGGACGCCGCTCCCCGCCATCTTGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074304 347 + 50109623 ATGCTAGGCACGGCCGGTCTGA-CCACCGCGC-CGCCGCCAG--GTCCGGCCCATGGT-AGGCTCGGGTGACCCTCTTCCCCTGAAGCACCCGCAGTCGCCTCTGCCCAAGTTGGTGACCTCAGCTCGGCCC----ATGAGAAACCCC-GGCCGGGCCGGCTACGACCTTGAGCGGCGGCCTCCGGGTCCCCACGTAAGCCGCTACCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACCCTCCGCTTGGCCTCGTTCATGTCCCGACTGAAAATGGGCTTCACGAAGGTGCTGGCGGTAGAAGTAGCTTGGCGGACGCCGCTCCCCGCCATCTTGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046323 347 + 4464012 ATGCTAGGCACGGCCGGTCTGA-CCACCGCGC-CGCCGCCAG--GTCCGGCCCATGGT-AGGCTCGGGTGACCCTCTTCCACTGAAGCACCCGCAGTCGCCTCTGCCCAAGTTGGTGACCTCAGCTCGGCCC----ATGAGAAACCCC-GGCCGGGCCGGCTACGACCTTGAGCGGCGGCCTCCGGGTCCCCACGTAAGCCGCTACCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACCCTCCGCTTGGCCTCGTTCATGTCCCGACTGAAAATGGGTTTCACGAAGGTGCTGGCGGTAGAAGTAGCTTGGCGGACGCTGCTCCCCGCCATCTTGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576131 347 - 115148730 ATGCTGGGCACGGCCGGTCTGA-CCCCCGCGC-CGCCGCCGG--GTCCGGCCCATGGT-AGGCTCGGGTGAACCTCTTCCCCTGAAGCACCCGCAGTCGCCTCTGCCCAAGTTGGTGACCTCAGCTCGGCCC----ATGAGAAACCCC-GGCCGGGCCGGCTACGACCTTGAGCGGCGGCCTCCGGGTCCCCACGTAAGCCGCTACCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACCCTCCGCTTGGCCTCGTTCATGTCCCGACTGAAAATGGGCTTCACGAAAGTGCTGGCAGTAGAAGCAGCTTGGCGGACGCCGCTCCCCGCCATCTTGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199448 344 + 92844088 ATGCTGGGGACGGCCGGTCTGA-CCACGG----CGCCGCCGG--ATCCGGCCCGTGGT-AGGCTCCGGTGACGCTCTTCCCCTGAAGCACCCGCAATCGCCTCTGCCCAAATTGGTGACCTCAGCTCGGCCC----ATGAGAAACCCC-GGCTGGGCCGGCTACGACCTTGAGCGGCGGCCTCCGGGTCCCCACGTAAGCCGCTACCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACCCTCCGCTTGGCCTCGTTCGTGTCCCGACTGAAAATGGGCTTCACAAAGGTGCTGGCGGTAGACGCAGCTTGGCGGACGCCGCTCGCCGCCATCTTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544470 344 - 96509753 ATGCTGGGGACGGCCGGTCTGA-CCACGG----CGCCGCCGG--ATCCGGCCCGTGGT-AGGCTCCGGTGACGCTCTTCCCCTGAAGCACCCGCAATCGCCTCTGCCCAAATTGGTGACCTCAGCTCGGCCC----ATGAGAAACCCC-GGCTGGGCCGGCTACGACCTTGAGCGGCGGCCTCCGGGTCCCCACGTAAGCCGCTACCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACCCTCCGCTTGGCCTCGTTCGTGTCCCGACTGAAAATGGGCTTCACAAAGGTGCTGGCGGTAGACGCAGCTTGGCGGACGCCGCTCGCCGCCATCTTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7032574 347 - 13098629 ATGCTGGGGACGGCCGGTCTGA-CCACGGCGC-CGCCGCCGG--GTCCGGCCCGCGGT-AGGCTCCGGTGACGCTCTTCCCCTGAAGCACCCGCAATCGCCTCTGCCCAAATTGGTGACCTCAGCTCGGCCC----ATGAGAAACCCC-GGCTGGGCCGGCTACGACCTTGAGCGGCGGCCTCCGGGTCCCCACGTAAGCCGCTACCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACCCTCCGCTTGGCCTCGTTCGTGTCCCGACTGAAAATGGGCTTCACAAAGGTGCTGGCGGTAGACGCAGCTTGGCGGACTCCGCTCGCCGCCATCTTGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004036 347 - 4483953 ATGCTGGGGACGGCCGGTCTGA-CCACGGCGC-CGCCGCCGG--ATCCGGCCCATGGT-AGGCTCCGGTGACGCTCTTCCCCTGGAGCACCCGCAATCGCCTCTGCTCAAATTGGTGACCTCAGCTCGGCCC----ATGAGAAACCCC-GGCTGGGCCGGCTACGACCTTGAGCGGCGGCCTCCGGGTCCCCACGTAAGCCGCTGCCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACCCTCCGCTTGGCCTCGTTCATGTCCCGACTGAAAATGGGCTTCACAAAGGTGCTGGCGGTAGACGCAGCTTGGCGGACGCCGCTCGCCGCCATCTTGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630437 347 + 33263144 ATGCTGGGGACGGCCGGTCTGA-CCACGGCGC-CGCCGCCGG--ATCCGGCCCATGGT-AGGCTCCGGTGACGCTCTTCCCCTGAAGCACCCGCAATCGCCTCTGCCCAAATTGGTGACCTCAGCTCGGCCC----AAGAGAAACCCC-GGCTGGGCCGGCTACGACCTTCAGCGGCGGCCTCCGGGTCCCCACGTAAGCCGCTACCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACCCTCCGCTTGGCCTCGTTCATGTCCCGACTGAAAATGGGCTTCACAAAGGTGCTGGCGGTAGAGGTAGCTTGGCGGACGCCGCTCGCCGCCATCTTGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13900975 347 - 14338769 ATGCTGGGGACGGCCGGTCTGA-CCACGGCGC-CGCCGCCGG--ATCCGGCCCATGGT-AGGCTCCGGTGACGCTCTTCCCCTGAAGCACCCGCAATCGCCTCTGCCCAAATTGGTGACCTCAGCTCGGCCC----ATGAGAAACCCC-GGCTGGGCCGGCTACGACCTTGAGCGGCGGCCTCCGGGTCCCCACGTAAGCCGCTGCCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACCCTCCGCTTGGCCTCGTTCATGTCCCGACTGAAAATGGGCTTCACAAAGGTGCTGGCGGTAGACGCAGCTTGGCGGACGCCGCTCGCCGCCATCTTGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 846754 346 + 1946073 ATGCTGGGGACGGCCGGTCTGA-CCACGGCGC-CGCCGCCGG--GTCCGGCCCG-GGT-AGGCTCGGGTGACGCTCTTCCCCTGAAGCACCCGCAATCGCCTCTGCCCAAATTGGTGACCTCAGCTCGGCCC----ATGAGAAACCCC-GGCCGGGCCGACTACGACCTTGAGCGGCGGCCTCCGGGTCCCCACGTAAGCCGCTACCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACCCTCCGCTTGGCCTCGTTCATGTCCCGACTGAAAATGGGCTTCACAAAGGTGCTGGCGGTAGAGGCAGCTTGGCGGACACCACTCCCCGCCATCTTGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888290 300 - 2117846 ATGCTGGG-------------------------------------TCTGGCCCAAGGT-AGGCTCGCGTGACCCGCTTCCCCTAAAGCATCCTCAGTCGCTTCTG--------------CTCAGTTCGGCCC----GTGAGAAATCCC-GGCCCGAGTGGCTACGACCTTGAGCGGCGGCCTCCGGATCCCCACGTGCGCCGCTACCTCTCACCAGTGTGCGGCACCTCCCGATACCAGGCGCGGTAGAGTTCGCGCACTCTTCGCTTGGCCTCGTTCATGTCCCGACTGAAAATGGGCTTCACAGAGGTGCTGGCGGTAGCCGCAGCTCGGCGGACGCCCATCCCCGCCATCTTGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805075 293 - 16357246 ATGCTGGG-------------------------------------TCCGGCCCAAAGT-AGGCTCG---GACCCTCTTCCTCTAAAGCACCCGCAGTCGCTTCTG-----------------AGTTCGGCCC----GTGAGAAATCCC-GGCCCG-GTGGCTACGACCTTGAGCGGCGGCCTCCGGATCCCCACGTGCGCCGCTACCTCTCACCCGTGTGCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACTCTTCGCTTGGCCTCGTTCATGTCCCGACTGAAAATGGGCTTCACAGAAGTGCTGGCGGTAGTCGCAGCTCGGCGGACACCGATCCCCGCCATCTTGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1276704 300 - 1807191 ATGCCGGG-------------------------------------TCCGGCCCAAGGC-AGGCTCGGGTGACCCTCTTCCCCTAAAGCACCCGCAGTCGCTTCTC--------------CTGAGGTCGGCCC----GTGAGAAATCCC-GGTCCGGGTGGCTACGACCTTGAGCGGCGGCCTCCGGATCCCCACGTGCGCCGCTACCTCTCACCAGTGTGCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGCACTCTTCGCTTGGCCTCGTTCATGTCCCGACTGAAAATGGGCTTCACAGAGGTGCTGGCAGCAGTCGCAGCTCGGCGGACGCCGATCCCCGCCATCTTGC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5638492 352 + 108171978 ATGCTGGGCACGGCCAGTCTGACCCGCGGCAC-CGCCGCCAG--GTCGGGCCCATCAT-ATGCTCGGCTGACCCTCTTTCCCTGAAGCATCCGGAGTCGCCTCTGCCCAAGTTAGTGACCTCAGCTCGGCCCGAGAGAGAGAAAAGTG-GGCCGAGCTGGCTGCGACCTTGAGCTGCTGCCTCCGGGGCCCCACGTGCGCCGCTGCCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGAACCCTCCGCTTGGCCTCGCTCATGTCTCGACTGAAAATGGGCTTCACAGAGATGCTGGCCGCAGCAGCAGCCCGGCTGACGCCGCCCGACGCCATCTTGC i micMur3.chr7 C 0 I 33 s proCoq1.NW_012136747v1 4999001 348 - 6317780 ATGCTGGGCACGGCTGGTCTGACCCCAGGCAC-CGCCGCCAG--GTCGGGCCCACCAT-ATGCTCAGGTGACCCTCTTCCCCCGAAGCATCAGGAGTCGCCTCTGGCCAAGTTAGTGACCTCAGCTAGGCCC----GAGAGAAAAGTG-GGCCGAGCCGGCTGCGACCTTGAGCTGCTGCCTCCGGGGCCCCACGTGCGCTGCTGCCTCTCACCAGTGTTCGGCACCTCCCGATACCAGGCGCGGTAGAGCTCGCGAACCCTCCGCTTGGCCTCGTTCATGTCTCGACTGAAAATGGGCTTCACAGAGGTGCTGGCCGCAGCAGCAACCCGGTGGACGCCGCCCGCCGCCATCTTGC i proCoq1.NW_012136747v1 I 1052 C 0 s otoGar3.GL873526 36252691 342 - 42659167 ATGCTT----------GTATGAACCCCAGCACTTGCCGCCAAGTGTCAGTTTCAGCATAACGCTCGCGTTACGCTCTTCCCCTGAAGCACCCGAAGTAGCCTCTGCCCAAGTTAGTAACCTCAGCTCGGCCC----GAGACAAAAGCG-GGCCCAGTCGGCTGCGACCTTGGGCGGCTGCCTCAGGGGACCCACGTGCACCGCTGCCTCTCACCAGTGTTCGGTACCTCCCGATACCAGGCGCGGTAGAGTTCGCGTACCCTCCGCTTGGCCTCGCTCATGTCTCGACTGAAAATGGGCTTCACGGAGGTGCTGGTCGCAGCTACAGCACTGCGGAGGCCGCTCGCCGCCATCTTGC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46047116 347 - 69331447 ATGCAAGGCACTGCTGGTCTGA-GTCCGGCGC-CGCCGCCGG--GTCGGGTCCACCA--ATGCTCGGGTGACCCTCCTCCCCTGAAGCACCCAGAGTCGCCTGTGCCCAAGTCGGTGACCTCAGCTCGTCCC----GGGAGAAACGGGAGGCCAGGACGGCTGCGACCCTGGACGGCTGCATCCGGAGCCCCGCGTGCGCCGCGGCGTCTCACCAGTGTTCGGCACCTCTCGATACCAGGCTCGGTACAACTCGCGCACCCTCCGCTTGGCTTCGTTCATGTCCCGACTAAAAATGGGCTTCACTGAAGCGGGAGCCGCAGCAGCCGCCCGCCGGAGGCCGCTCGCCGCCATCTTGC i canFam3.chr10 C 0 C 0 a score=256559.000000 s hg38.chr22_GL383582v2_alt 13094 26 + 162811 CAAAGCATCCACTC-CACAACCCCACC s panTro5.chr22 28769715 26 + 37823149 CAAAGCATCCACTC-CACAACCCCACC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074651 26 + 50109623 CAAAGCATCCACTC-CACAACCCCACC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046670 26 + 4464012 CAAAGCATCCACTC-CACAACCCCACC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576478 26 - 115148730 CAAAGCATCCGCTC-CACAACCCCACC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199792 26 + 92844088 CAAAGTATCCACTC-CACAACCCCACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544814 26 - 96509753 CAAAGTATCCACTC-CACAACCCCACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7032921 26 - 13098629 CAAAGTATCCACTC-CACAACCCCACC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004383 26 - 4483953 CAAAGTATCCACTC-CACAACCCCACC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630784 26 + 33263144 CAAAGTATCCACTC-CACAGCCCCACC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901322 26 - 14338769 CAAAGTATCCACTC-CACAACCCCACC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847100 26 + 1946073 CAAAGTATCCACTC-CACAACCCCACC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888590 26 - 2117846 CAAAACGTCCACTC-CACAACTCCACC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805368 26 - 16357246 CAAAACACCCACTC-CACAACTCCACC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1277004 26 - 1807191 CAAAACATCCACTC-CACAACTCCGCC i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4999349 27 - 6317780 TAGGGAAACCACCTCCCCAACCTCACC i proCoq1.NW_012136747v1 C 0 I 20 s otoGar3.GL873526 36253033 25 - 42659167 TAGAGAAACCACCT--CCAGCCCCACC i otoGar3.GL873526 C 0 I 1 s canFam3.chr10 46047463 15 - 69331447 CAAAGAAACCACCT-C----------- i canFam3.chr10 C 0 C 0 e micMur3.chr7 5638844 33 + 108171978 I a score=40898.000000 s hg38.chr22_GL383582v2_alt 13120 6 + 162811 CCTTTG s panTro5.chr22 28769741 6 + 37823149 CCTTTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074677 6 + 50109623 CCTTTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046696 6 + 4464012 TCTTTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576504 6 - 115148730 CCTTTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199818 6 + 92844088 TCTTTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544840 6 - 96509753 TCTTTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7032947 6 - 13098629 TCTTTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004409 6 - 4483953 TCTTTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630810 6 + 33263144 TCTTTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901348 6 - 14338769 TCTTTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847126 5 + 1946073 TC-TTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888616 6 - 2117846 CCTTCG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805394 6 - 16357246 CCTTCG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1277030 6 - 1807191 CCTTCG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36253059 6 - 42659167 ACTTCC i otoGar3.GL873526 I 1 I 1 e canFam3.chr10 46047478 0 - 69331447 C e proCoq1.NW_012136747v1 4999376 20 - 6317780 I e micMur3.chr7 5638844 33 + 108171978 I a score=130996.000000 s hg38.chr22_GL383582v2_alt 13126 14 + 162811 CAAGCAGCGCGTGC s panTro5.chr22 28769747 14 + 37823149 CAAGCAGCGCGTGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074683 14 + 50109623 CAAGCAGCGCGTGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046702 14 + 4464012 CAAGCAGCGCGTGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576510 14 - 115148730 CAAGCAGCGCGTGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199824 14 + 92844088 CAAGCCGCGCGTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544846 14 - 96509753 CAAGCCGCGCGTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7032953 14 - 13098629 CAAGCCGCGCGTGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004415 14 - 4483953 CTAGCCGCGGGTGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630816 14 + 33263144 CAAGCCGCGCGTGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901354 14 - 14338769 CTAGCCGCGGGTGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847131 14 + 1946073 CAAGCCGCGCGTGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888622 14 - 2117846 CGAGCAGCGCTTGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805400 9 - 16357246 CGAGCAGCG----- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1277036 14 - 1807191 CGAGCAGCGCGGGC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5638877 14 + 108171978 CAAGCAGCGCGCGG i micMur3.chr7 I 33 C 0 s otoGar3.GL873526 36253066 14 - 42659167 CAAGCCGCGCGTGC i otoGar3.GL873526 I 1 C 0 s canFam3.chr10 46047478 10 - 69331447 ----CCGCGAGGGC i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4999376 20 - 6317780 I a score=357527.000000 s hg38.chr22_GL383582v2_alt 13140 32 + 162811 GGACCGCGGGCGAATGTCTTTTCCCATTGGCT s panTro5.chr22 28769761 32 + 37823149 GGACCGCGGGCGAATGTCTTTTCCCATTGGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074697 32 + 50109623 GGACCGCGGGCGAATGTCTTTTCCCATTGGCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046716 32 + 4464012 GGACCGCGGGCGAATGTCTTTTCCCATTGGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576524 32 - 115148730 GGACCGCGGGCGAATGTCTTTTCCCATTGGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199838 32 + 92844088 GACCCGCGGGCGAATGTCTTTTCTCATTGGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544860 32 - 96509753 GACCCGCGGGCGAATGTCTTTTCTCATTGGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7032967 32 - 13098629 GACCCGCGGGCGAATGTCTTTTCTCATTGGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004429 32 - 4483953 GACCCGCGGGCAAATGTCTTTTCTCATTGGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630830 32 + 33263144 GACCCGCAGGCGAATGTCTTTTCTCATTGGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901368 32 - 14338769 GACTCGCGGGCGAATGTCTTTTCTCATTGGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847145 32 + 1946073 GACCAGCGGGCGAATGTCTTTTCTCATTGGCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888636 32 - 2117846 GGCCGGAGGACGAAAGTCTCTTGTCTTTGGCT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1277050 32 - 1807191 GGCCCGAGGGCGAAAGTCTCTTCTCTTTGGCT i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5638891 32 + 108171978 GGCCCGGGGACGAATGTCTTTTCTCATTGGCT i micMur3.chr7 C 0 I 43 s proCoq1.NW_012136747v1 4999396 32 - 6317780 GGGCCGAGGACGAATGTCTTTTCTCATTGGCT i proCoq1.NW_012136747v1 I 20 C 0 s otoGar3.GL873526 36253080 31 - 42659167 -GGCGGAGGGCGAATGTCTCTTATCATTGGCT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46047488 32 - 69331447 GGCCCAAGGAGGAAAGTCTTTTCTCATTGGCT i canFam3.chr10 C 0 C 0 e saiBol1.JH378157 8805409 0 - 16357246 C a score=829657.000000 s hg38.chr22_GL383582v2_alt 13172 78 + 162811 AAGGAGGAACGCCCCGCCTGTATGC----T-GGGTGGGCGGGAGGATGACT-CTGAGGCTCTCGGATTGGCTGGGAAGC--------------CTCTC s panTro5.chr22 28769793 78 + 37823149 AAGGAGGAACGCCCCGCCTGTATGC----T-GGGTGGGCGGGAGGATGACT-CTGAGGCTCTCGGATTGGCTGGGAAGC--------------CTCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074729 78 + 50109623 AAGGAGGAACGCCCCGCCTGTATGC----T-GGGTGGGCGGGAGGATGACT-CTGAGGCTCTCGGATTGGCTGGGAAGC--------------CTCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046748 78 + 4464012 AAGGAGGAACGCCCCGCCTGTATGC----T-GGGTGGGCGGGAGGATGACT-CTGAGGCTCTCGGATTGGCTGGGAAGC--------------CTCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576556 78 - 115148730 AAGGAGGAACGCCCCGCCTGTATGC----T-GGGTGGGCGGGAGGATGACT-CTGAAGCTCTCGGATTGGCTGGGAAGC--------------CTCTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199870 78 + 92844088 GAGGGGGAATGCCCCGCCTGTATGC----T-GGGTGGGCGGGAGAATGACT-GTAAGGCTCTCCGATTGGCTGCGAAGC--------------CTCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544892 78 - 96509753 GAGGGGGAATGCCCCGCCTGTATGC----T-GGGTGGGCGGGAGGATGACT-GTAAGGCTCTCCGATTGGCTGCGAAGC--------------CTCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7032999 78 - 13098629 GAGGGGGAATGCCCCGCCTGTATGC----T-GGGTGGGCGGGAGGATGACT-GTAAGGCTCTCCGATTGGCTGCGAAGC--------------CTCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004461 78 - 4483953 GAGGGGGAATGCCCCGCCTGTATGC----T-GGGTGGGCGGGAGGATGACT-GTAAGGCTCTCCGATTGGCTGCGAAGC--------------CTCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630862 78 + 33263144 GAGGGGGAATGCCCCGCCTGTATGC----T-GGGTGGGCGGGAGGATGACT-GTAAGGCTCTCCGATTGGCTGGGAAGC--------------CTCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901400 78 - 14338769 GAGGGGGAATGCCCCGCCTGTATGC----T-GGGTGGGCGGGAGGATGACT-GTAAGGCTCTCCGATTGGCTGCGAAGC--------------CTCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847177 78 + 1946073 AAGGAGGAATGCCCCGCCTGCACGC----T-GGATGGGCGGGAGGATGACT-GTAAGGCTCTCCGATTGGCTGGGAAGC--------------CTCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888668 92 - 2117846 AAGGAGAGACGCCCCGCCTCTATGC----T-GGGTGGGCGGGAGGATGACT-GTCAGGCTCTCCGATTGGCTAGGAAGCctctctctctctctctctc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805409 69 - 16357246 ---------CGTCCCGCCTCTACGC----T-GGGTGGGCGGGAGGACGACT-GTAAGGCTCTCCGATTGGCTAGGAAGC--------------CTCTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1277082 78 - 1807191 AAGGAGAGACGTCCCGCCTCTGTGC----T-GGGTGGGCGGGAGGATGACT-CTAAGGCTCTCCGATTGGCTAGGAAGC--------------ATCTC i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4999428 79 - 6317780 AAAATGGAACGCCACGCCCCTATGC----CCCGGTGGGCGGGAGGACGGCT-CTGGGGCTCTCCAATTGGCTGGGAAGT--------------CTCTC i proCoq1.NW_012136747v1 C 0 I 282 s otoGar3.GL873526 36253111 79 - 42659167 AAAATGGAACGCCACGCCCCTATGC----TCCGGGTGGCAGATGGACGGCC-CTGGGACTCTCGGATTGGCTAGGAAGT--------------CTCTC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46047520 83 - 69331447 AAAACCGAAAGACACGCCCCCAAACGCCAC-AGGTAGGCGGGAGGATAGCTGGCGAGGCCCTCTGATTGGCTGTGAGGC--------------CTCCC i canFam3.chr10 C 0 C 0 e micMur3.chr7 5638923 43 + 108171978 I a score=22696.000000 s hg38.chr22_GL383582v2_alt 13250 2 + 162811 TC s panTro5.chr22 28769871 2 + 37823149 TC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074807 2 + 50109623 TC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046826 2 + 4464012 TC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576634 2 - 115148730 TC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199948 2 + 92844088 TC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544970 2 - 96509753 TC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7033077 2 - 13098629 TC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004539 2 - 4483953 TC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630940 2 + 33263144 TC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901478 2 - 14338769 TC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847255 2 + 1946073 TC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888760 2 - 2117846 tc i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8805478 2 - 16357246 TC i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1277160 2 - 1807191 TC i cebCap1.NW_016107750v1 C 0 I 20 s otoGar3.GL873526 36253190 2 - 42659167 GC i otoGar3.GL873526 C 0 I 6 s canFam3.chr10 46047603 2 - 69331447 TC i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4999507 282 - 6317780 I e micMur3.chr7 5638923 43 + 108171978 I a score=143302.000000 s hg38.chr22_GL383582v2_alt 13252 20 + 162811 --TGGCTGAG-CGAACGGTGGGT s panTro5.chr22 28769873 20 + 37823149 --TGGCTGAG-CGAACGGTGGGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074809 20 + 50109623 --TGGCTGAG-CGAACGGTGGGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046828 20 + 4464012 --TGGCTGAG-CGAACGGTGGGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576636 20 - 115148730 --TGGCTGAG-CGAACGGTGGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199950 20 + 92844088 --TGGCTGAG-CGAAGGGTGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544972 20 - 96509753 --TGGCTGAG-CGAAGGGTGGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7033079 20 - 13098629 --TGGCTGAG-CGAAGGGTGGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004541 20 - 4483953 --TGGCTGAG-CGAAGGGTGGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630942 20 + 33263144 --TGGCTGAG-CGAAGGGTGGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901480 20 - 14338769 --TGGCTGAG-CGAAGGGTGGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847257 20 + 1946073 --TGGCTGAG-CGAACGGTGGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888763 19 - 2117846 --TAGGTGGG-CGAGTGGTGGG- i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8805481 19 - 16357246 --TAGGTGGG-CGAGTGGTGGG- i saiBol1.JH378157 I 1 C 0 s otoGar3.GL873526 36253198 20 - 42659167 --TGGGAGAC-CAGCTGGTGGGG i otoGar3.GL873526 I 6 C 0 s canFam3.chr10 46047605 23 - 69331447 TCTGGGTGGGACGGCCGCTGGGG i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4999507 282 - 6317780 I e micMur3.chr7 5638923 43 + 108171978 I e cebCap1.NW_016107750v1 1277162 20 - 1807191 I a score=398530.000000 s hg38.chr22_GL383582v2_alt 13272 36 + 162811 GCTGCGCATGCTCATCTACAGAAACG--CC---GCTTGGCC s panTro5.chr22 28769893 36 + 37823149 GCTGCGCATGCTCATCTACAGAAACG--CC---GCTTGGCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074829 36 + 50109623 GCTGCGCATGCTCATCTACAGAAACG--CC---GCTTGGCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046848 36 + 4464012 GCTGCGCATGCTCATCTACACAAACG--CC---GCTTGGCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576656 36 - 115148730 GCTGCGCATGCTCATCTACAGAAACG--CC---GATTGGCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84199970 36 + 92844088 GTTGCGCATGCTCATCTACAGAAGCG--CC---GCTTGGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87544992 36 - 96509753 GTTGCGCATGCTCATCTACAGAAGCG--CC---GCTTGGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7033099 36 - 13098629 GTTGCGCATGCTCATCTACAGAAGCG--CC---TCTTGGCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004561 36 - 4483953 GCTGCGCATGCTCATCTACAGAAGCG--CC---GCTTGGCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630962 36 + 33263144 GCTGCGCATGCTCATCTACAGAAGCG--CC---GCTTGGCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901500 36 - 14338769 GCTGCGCATGCTCATCTACAGAAGCG--CC---GCTTGGCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847277 36 + 1946073 GCTGCGCATGCTCATCTACAGAAGCG--CC---GCTTGGCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888782 36 - 2117846 GCTGCGCATGCTCATCCACAGAAGCA--CC---GCTAGGCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805500 36 - 16357246 GCTGCGCATGCTCATTTACAGAAGCG--CC---GCTTGGCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1277182 36 - 1807191 GCTGCGCAAGCTCATTTACAGAAGCC--CC---GCTTGGCC i cebCap1.NW_016107750v1 I 20 C 0 s micMur3.chr7 5638966 36 + 108171978 GCTGCGCATGCTCATTTGCAGAAACA--CC---CCTTGGCC i micMur3.chr7 I 43 I 17 s otoGar3.GL873526 36253218 36 - 42659167 GCTTCGC-TTCTCATCTGCAGTAACAGCCC---CCTAGGT- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46047628 39 - 69331447 GCTGCGCATGCCCAAGAGCAGAAACC--CCCCGGCTCAGCC i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4999507 282 - 6317780 I a score=87878.000000 s hg38.chr22_GL383582v2_alt 13308 22 + 162811 TTTGGACTACACCATCTGTCGC s panTro5.chr22 28769929 18 + 37823149 TTTGGACTACACCGTCTG---- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074865 18 + 50109623 TTTGGACTACACCGTCTG---- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046884 18 + 4464012 TTTGGACTACCCCATCTG---- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576692 18 - 115148730 TTTGGACTACCCTATCTG---- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84200006 18 + 92844088 TTTGGACTAACCTATCTG---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87545028 18 - 96509753 TTTGGACTAACCTATCTG---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7033135 18 - 13098629 TTTGGACTAACCTATCTG---- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004597 18 - 4483953 TTTGGACTAACCTATCTG---- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24630998 18 + 33263144 TTTGGACTAACCTACCTG---- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901536 18 - 14338769 TTTGGACTAACCTATCTG---- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847313 18 + 1946073 TTTGGACTAACGTATTTG---- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888818 17 - 2117846 GTTGGGCCG-CTCACCTG---- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805536 17 - 16357246 GTTGGGCCG-CCCACCCG---- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1277218 17 - 1807191 ATTGGGCAG-CCCAGCTG---- i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36253254 18 - 42659167 GGTGGGACAGTCTACCTG---- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46047667 16 - 69331447 -GTAGGCGGGCCTAACC----- i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4999507 282 - 6317780 I e micMur3.chr7 5639002 17 + 108171978 I a score=344704.000000 s hg38.chr22_GL383582v2_alt 13330 43 + 162811 TCGCTCTAACGAGCCGGCGTTGCCGCCAGGGGACGCTCGGGCC s panTro5.chr22 28769947 43 + 37823149 TCGCTCTAACGAGCCGGCGTCGCCGCCAGGGGACGCTCGGGCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074883 43 + 50109623 TCGCTCTAACGAGCCGGCGTCGCCGCCAGGGGACGCTCGGGCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046902 43 + 4464012 TCGCTCTAACGAGCCGGCGTCGCCGGCAGGGGACGCTCGGGCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576710 43 - 115148730 TCGCTCTAACGAGCCGGCGTCGCCGCCAGGGGACGCTCGGGCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84200024 43 + 92844088 TCGCGCTAACGGGCCGGCGTCGCCGCCAGGGGACGCTTGGGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87545046 43 - 96509753 TCGCGCTAACGGGCCGGCGTCGCCGCCAGGGGACGCTTGGGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7033153 43 - 13098629 TCGCGCTAACGGGCCGGCGTCGCCGCCAGGGGACGCTTGGGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004615 43 - 4483953 TCGCGGTAACGGGCCGGCGTCGCCGCCAGGGGACGCTGGGGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24631016 43 + 33263144 TCGCGCTAACGGGCCGGCGTCGCCGCCAGGGGACGCTCGGGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901554 43 - 14338769 TCGCGCTAACGGGCCGGCGTCGCCGCCAGGGGACGCTCGGGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847331 43 + 1946073 TCGCGCTAACGGGCCGGCGTCGCCACCAGGGGACGCTCGGGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888835 24 - 2117846 TCGCTCTGACGTGCCGGCGCCG-------------------CC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805553 23 - 16357246 TCGCTCTGACGTGCGGGCGCCG--------------------C i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1277235 24 - 1807191 TCGCTCTGACGTGCCGGCGCCG-------------------CC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5639019 43 + 108171978 TCGCTCTAAAAAGCCGGTGGTGCCGCCAGGGGGCGCTCAGGCC i micMur3.chr7 I 17 I 388 s otoGar3.GL873526 36253272 43 - 42659167 TCGCTCCGAGGAGCCGATGGCACCGCCAGGGGGCGGGTGGGCC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46047683 35 - 69331447 TTGGCCTAACCG--------CGCCGCCAGGGGCCGCTCGAGCG i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4999507 282 - 6317780 I a score=1268449.000000 s hg38.chr22_GL383582v2_alt 13373 146 + 162811 GCAGG-AGGTCGCTGGGTCGTGAGCTGGCGCCGGGGACGCCGAGCGACTGCGGGGTTTCCCTCAGCGTCCTGCTATCCGGCTGCCCGCCGCGCTCCTT-GGTAGTGTCCGTGGGCGCGCAGGCCTTGAAGAACCT------------CCTCGTGGCGGGA----- s panTro5.chr22 28769990 147 + 37823149 GCAGGAAGGTCGCTGGGTCGTGAGCTGGCGCCGGGGACGCCGAGCGACTGCGGGGTTTCCCTCAGCGTCCTGCTATCCGGCTGCCCGCCGCGCTCCTT-GGTAGTGTCCGTGGGAGCGCAGGCCTTGAAGAACCT------------CCTCGTGGCGGGC----- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41074926 147 + 50109623 GCAGGAAGGTCGCTGGGTCGTGAGCTGGCGCCGGGGACGCCGAGCGACTGCGGGGTTTCCCTCAGCGTCCTGCTATCCGGCTGCCCGCCGCGCTCCTT-GGTAGTGTCCGTGGGCGCGCAGGCCTTGAAGAACCT------------CCTCGTGGCGGGC----- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3046945 147 + 4464012 GCAGGAAGGTCGCTGGGTCGTGAGCTGGCGCCGGGGACGCCGAGCGACTGCGGGGTTTCCCTCAGCGTCCTCCTATCCGGCTGCCCGCCGCGCTCCTT-GGTAGTGTCCGTGGGCGCGCAGGCCTTGAAGAACCT------------CTTCGCGGCGGGC----- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576753 145 - 115148730 GCGGGAAGGTCGCTGGGTCGTGAGCTGGCGCCAGGGACGCCGAGCGACTGCGGGGCTTCCCTCAGCGTCCTGCTATCCGGCTGCTCGCCGCGCTCCCT-GGTAGTGTCCGTGG--GCGCAGGCCTTGAAGAACCT------------CCTCGCGGCGGGC----- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84200067 147 + 92844088 GCAGGGTGGTCGCTGGGTCGTGAGCTGGCGCCGAGGACGCCGAGCGACTGCGGGACTTCTGTCAGCGTCCTGCTATCCGGCTGCCCGCCGCGCTCCCT-GGTAGTGTCCGTGGACGCGCAGGCCTTGAAGAACCT------------CCTCGCGGCGGGC----- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87545089 147 - 96509753 GCAGGGTGGTCGCTGGGTCGTGAGCTGGCGCCGAGGACGCCGAGCGACTGCGGGACTTCTGTCAGCGTCCTGCTATCCGGCTGCCCGCCGCGCTCCCT-GGTAGTGTCCGTGGACGCGCAGGCCTTGAAGAACCT------------CCTCGCGGCGGGC----- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7033196 147 - 13098629 GCAGGGTGGTCGCTGGGTCGTGAGCTGGCGCCGAGGACGCCGAGCGACTGCGGGGCTTCTGTCAGCGTCCTGCTATCCGGCTGCCCGCCGCGCTCCCT-GGTAGTGTCCGTGGACGCGCAGGCCTTGAAGAACCT------------CCTCGCGGCGGGC----- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004658 147 - 4483953 GCAGGGTGGTCGCTGGGTGGTGAGCTGGCGCCGAGGACGCCGAGCGACTGCGGGGCTTCTGTCAGCGTCCTGCTATGCGGCTGCCCGCCTCGCTCCCT-CGTAGTGTCCGTGGACGCGCAGGCCTTGAAGAACCT------------CCTCGCGGCGGGC----- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24631059 147 + 33263144 GCAGAGTGGTCGCTGGGTCGTGAGCTGGCGCCGAGGACGCCGAGCGACTGCGGGACTTCCGTCAGCGTCCTGCTATCCAGCTGCCCGCCGCGCTCCCT-GGTAGTGTCCGTGGACTCGCAGGCCTTGAAGAACCT------------CCTCGCGGCGGGC----- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901597 147 - 14338769 GCAGGGTGGTCGCTGGGTGGTGAGCTGGCGCCGGGGACGCCGAGCGACTGCGGGGCTTCTGTCAGCGTCCTGCTATGCGGCTGCCCGCCTCGCTCCCT-GGTAGTGTCCGTGGACGCGCAGGCCTTGAAGAACCT------------CCTCGCGGCGGGC----- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847374 147 + 1946073 GCAGGGTGGTAGCTGGGTCGTGAGCTGGCGCCGGGGACGCCGAGCGACTGCGGGGCTTCCGTCAGCGTCCTGCTATCCGGCTGCCCGCCGCGCTTCCT-GGTAGTGTCCGTGAACGCGCAGGCCTTGAAGAACCT------------CCTCGCAGCGGGC----- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1888859 146 - 2117846 GTAAGAAGGTAGCTGGGTCTGGCGCTGGCGCTGGGTAAGCGGAGCGGCTGCGAGGCTTCCCTCGGCGTCCGGGTGTCCAGCTTCCCACAGCGCGCCCT-GGTAGCGTCCGTGGGCGCACAGG-CTCGAAGAACCT------------CCTCGAGGCGGGC----- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805576 147 - 16357246 GCAAGGTGGTAGCTGGGTCTGGCGCCGGCGCTGGGTAAGCGGAGCGGCTGCGGGCCTTCCCTCGGCGTCCCGGTGTCCGGCTTCCCGCAGCGCGTCCT-GGTAGCGTCCGTGGGCGCACAGGCCTCGAAGAACCT------------CCTCGAGGCGGGC----- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1277259 147 - 1807191 GCAAGGTGGTTGCTGGGTCTGGCGCTGGCGCTGGGTAAGCGGAGCGGCGGCGGGGCTTCCCTCGGCGTCCGGGTGTCCGGCTTCCTACAGCGCGTCCT-GGTAGCGTCCGTGGGCGCACAGGCCTCGAAGAACCT------------CCTCGAGGCGGGC----- i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36253315 140 - 42659167 CCAGGCTGGCCGCTAGGCGAGGAGCTGGCATCGGAG-------------GCCGGACTTACA-----GTTTAGTAGTGCAGCTGCCTGTGGTGCTCTTA-GGTAGAGCCCTTGGGCGTAGAGGGCCC-AAGAACTTCTGGACTAGTTCCCTGAGCGCGGGC----- i otoGar3.GL873526 C 0 I 7 s canFam3.chr10 46047718 119 - 69331447 -------------------CCAGACTGGC--------CGCGGAGCAGCCGCCCCGCGTCCCCCAGCGTCCCGCCG-CCACCTGCCCGCCGCGCTCCCTCGGCTGCGCCTGTGGGTGCGTGGGCCTCGCGGAGCTT------------C------GCGGGCCGGCT i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 4999507 282 - 6317780 I e micMur3.chr7 5639062 388 + 108171978 I a score=484435.000000 s hg38.chr22_GL383582v2_alt 13519 41 + 162811 --CCCCGAGGTAACTGCTGAGGCAGATAATGGCGCCTGGGCTG s panTro5.chr22 28770137 41 + 37823149 --CCCCGAGGTAACTGCTGAGGCAGATAATGGCGCCTGGGCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41075073 41 + 50109623 --CCCCGAGGTAACTGCTGAGGCAGATAATGGCGCCTGGGCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3047092 41 + 4464012 --CCCAGAGGTAACTGCTGAGGCAGATAATGGCGCCTGGGCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576898 41 - 115148730 --CCCCGAGGTAACTGCTGAGGCAGATAATGGCGCCTGGGCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84200214 41 + 92844088 --CCCCGAGGTAACTGCTGAGGCAGATAATGGCGCCTGGACTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87545236 41 - 96509753 --CCCCGAGGTAACTGCTGAGGCAGATAATGGCGCCTGGACTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7033343 41 - 13098629 --CCCCGAGGTAACTGCTGAGGCAGATAATGGCGCCTGGACTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004805 41 - 4483953 --CCCCGAGGTAACTTCTGAGGCAGATAATGGCGCCTGGACTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24631206 41 + 33263144 --CCCCGAGGTAACTGCTGAGGCAGATAATGGCGCCTGGACTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901744 41 - 14338769 --CCCCGAGGTAACTTCTGAGGCAGATAATGGCGCCTGGACTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847521 41 + 1946073 --CCGCGAGATAACTTCTGAGGCAGATAATGGCGCCTGGACTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1889005 41 - 2117846 --ACCCGAGGTGGCGGCTGAGGCAGATAATGGCGCCTGGGCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805723 41 - 16357246 --ACCCGAGGTGGCGGCTGAGGCAGATAATGGCGCCTGGGCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1277406 41 - 1807191 --ACCCGAGGTGGCGGCTGAGGCAGATAAtggcgcctgggctg i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 4999789 41 - 6317780 --CCCCGAGGTGACGGCTGAGGCAGATAATGGCGCCTGCGCTG i proCoq1.NW_012136747v1 I 282 I 224 s otoGar3.GL873526 36253462 41 - 42659167 --CCCCGAGGTGACAGCTGAGGCCAATGATGGCGCGTGGGCTG i otoGar3.GL873526 I 7 C 0 s canFam3.chr10 46047837 43 - 69331447 TCCCCGGCGGGGGCCGCGGGAGCCCTTCATGGCGCCTGGGCTT i canFam3.chr10 C 0 C 0 e micMur3.chr7 5639062 388 + 108171978 I a score=1714089.000000 s hg38.chr22_GL383582v2_alt 13560 189 + 162811 CGGTGGGGCTTGTCCTGCCGCCTGGCGGC-TTTCTGCAG-------------------------------------------------------------GGCCAGGATATA-----------------------------------------------------CTTACTTTTC------TGTAAACCAACTCTTCCTTAGCGCAGGAGAGGTGTCAAAGAGC--------------------TGGCGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCATCGTAGACAGGGACATTCGCATCCCGAGCCCTGGATCTC s panTro5.chr22 28770178 189 + 37823149 CGGTGGGGCTTGCCCTGCCGCCTGGCGGC-TTTCTGCAG-------------------------------------------------------------GGCCAGGATATA-----------------------------------------------------CTTACTTTTC------TGTAAACCAACTCTTCCTTAGCGCAGGAGAGGTGTCAAAGAGC--------------------TGGCGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCATCGTAGACAGGGACATTCGCATCCCGAGCCCTGGATCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41075114 189 + 50109623 CGGTGGGGCTTGCCCTGCCGCCTGGCGGC-TTTCTGCAG-------------------------------------------------------------GGCCAGGATATA-----------------------------------------------------CTTACTTTTC------TGTAAACCAACTCTTCCTTAGCGCAGGAGAGGTGTCAAAGAGC--------------------TGGCGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCATCGTAGACAGGGACATTCGCATCCCGAGCCCTGGATCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3047133 184 + 4464012 CGGTGGGGCTTGCCCTG-CGCCTGGCGGC-TTTCTGCAG-------------------------------------------------------------GGCCAGGATA---------------------------------------------------------TACTTTTC------TGTAAACCAACTCTTCCTTAGCTCAGGAGAGGTGTCAAAGCGC--------------------TGGCGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCATCGTAGACAGGGACATTCGCATCCCGAGCCCTGGATCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106576939 189 - 115148730 TGGTGGGGCTTGCCCTGCCGCCTGGCGGC-TTTCTGCAG-------------------------------------------------------------GGCCAGGATATA-----------------------------------------------------CTTATTTTTC------TGTAAACCAACTCTTCCTTAGCGCAGGAGAGGTGTCAAAGCGC--------------------TGGTGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCATCGTAGACAGGGACATTCGCATCCCGAGCCCTGGATCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84200255 189 + 92844088 CGGTGGCGCTTGCCCTGCCGCCTGGCGGC-TTTCTGCAG-------------------------------------------------------------GGCCAGGGTATA-----------------------------------------------------CTTGTTTTTC------TGTAAACCGACTCTTCCTTAGCACAAGAGAGGTGTCAAAGCGC--------------------CGGCGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCATCGTAGACAGGGACATTCGCATCCCGAGCCCTGGATCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87545277 189 - 96509753 CGGTGGCGCTTGCCCTGCCGCCTGGCGGC-TTTCTGCAG-------------------------------------------------------------GGCCAGGGTATA-----------------------------------------------------CTTGTTTTTC------TGTAAACCGACTCTTCCTTAGCACAAGAGAGGTGTCAAAGCGC--------------------CGGCGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCATCGTAGACAGGGACATTCGCATCCCGAGCCCTGGATCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7033384 189 - 13098629 CGGTGGCGCTTGCCCTGCCGCCTGGCGGC-TTTCTGCAG-------------------------------------------------------------GGCCAGGGTGTA-----------------------------------------------------CTTGTTTTTC------TGTAAACCGACTCTTCCTTAGCACAAGAGAGGTGTCAAAGCGC--------------------CGGCGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCATCGTAGACAGGGACATTCGCATCCCGAGCCCTGGATCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4004846 189 - 4483953 CGGTGGCGCTTGCCCTGCCGCCTGGCGGC-TTTCTGCAG-------------------------------------------------------------GGCCAGGGTATA-----------------------------------------------------CTTGTTTTTC------TGTAAACCAACTCTTCCTTAGTGCAGGAGAGGTGTCAAAGCGC--------------------CGGCGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCGTCGTAGACAGGGACATTCGCATCCCGAGCCCTGGATCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24631247 189 + 33263144 CGGTGGCGCTTGCCCTGCCGCCTGGCGGC-TTTCTGCAG-------------------------------------------------------------GGCCAGGGTATA-----------------------------------------------------CTTGTTTTTC------TGTAAACCAACTCTTCCTTAGCGCAGGAGAGGTGTCAAAGCGC--------------------CGGCGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCATCGTAGACAGGGACATTCGCATCCCGAGCCCTGGATCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901785 189 - 14338769 CGGTGGCGCTTGCCCTGCCGCCTGGCGGC-TTTCTGCAG-------------------------------------------------------------GGCCAGGGTATA-----------------------------------------------------CTTGTTTTTC------TGTAAACCAACTCTTCCTTAGCGCAGGAGAGGTGTGAAAGCGC--------------------CGACGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCATCGTAGACAGGGACATTCGCATCCCGAGCCCTGGATCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847562 189 + 1946073 CGGTGGCGCTTGCCCTGCCGCCTGGCGGC-TTTCTGCAG-------------------------------------------------------------GGCCAGGGTATA-----------------------------------------------------CTTATTTTTC------TGTAAAACAACTCTTCCTTAGCGCAGGAGAGGTGTCAAAGCGC--------------------CGGCGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCATCGTAGGCAGGGACATTCGCATCCTGAGCCCTAGATCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1889046 178 - 2117846 CGGTGGCGCTGGCCCTATCGCCTGGCAGC-TTTCTCCAG-------------------------------------------------------------GGCCAGGATATA-----------------------------------------------------CTTATTTTTC------TGTAAAGCAACTCTTCCTTAGCGCAGAAGAGGCGTCAAAGCGC--------------------TGGCGCGTCTCCAGAGCT-----------GCTGTAACGGCAGCCCCGTCGTAGGCAGGGACATTCGCATCCCGAGCCCAGGATCGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805764 182 - 16357246 CGGTGGCGCTGGCCCTGTCTC-------C-TTTCTCCAG-------------------------------------------------------------GGCCAGGATATA-----------------------------------------------------CTTATTTTTC------TGTAAACCAACTCTTCCTTAGCGCCGAAGAGGCGTCAAAACGC--------------------TGGCGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCATCGTAGGCAGGGACATTCGCATCCCGAGCCCTGGACCGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1277447 189 - 1807191 cagtggcgctggccctgtcgcctggcgAC-CTTCCCCAG-------------------------------------------------------------GGCCAGGATATA-----------------------------------------------------CTTACTTTTC------TGTAAACCAACTCTTCCTTAGCGCCGAAGAGGCGTTAAAACGC--------------------TGGCGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGACAGCCCCATCGTGGGCAGGGACATTCGCACCCCGAGCCCTGGATCGC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36253503 197 - 42659167 TGATGGCGCTGGCCCAGCCCCTCGGCGGCTTTTCTGCA----------------------------------------------------------------CAAGGGTGTA-------------TGTGTGT------ATATGCTATATATAATACATGT----TCGTATTTTCCCCTTCTTAGGAACCAGCTCTTCCTTAGCGCGAGTGAGTTATAA----------------------------------CCCCAGTG------------AGTTATAGCATCAGCCTCATTTTAGACAAGAGCATGAGTATCCCAATTCCTGATTTCC i otoGar3.GL873526 C 0 I 1 s canFam3.chr10 46047880 323 - 69331447 CCGTGGTGCTGGCCTGGCCCCTGTGCGGTTTTTCCGCAGCAACCTCTTTATCTTTCCTTTCCtctttatctttttaatttttttttattggagttcaatttgccaacatatagcctatcacccagtgctcgtcccgtcaagtgcccccctcagtgcccgtcatcttttctccccc------GTTAAACCAACTCTTGGGAAGCGCTGTGCGGCCGCCAGAGCGCTTTCCTGGCCGTCGGCTTCTTGGCGCTTCTCCGCATCCCGGGAAGGTAGG-TCTATCATCAGCCCCGTCTTAGACAAGAACGTTTTCATCCTGAACTGTGCATCTC i canFam3.chr10 C 0 I 2 e proCoq1.NW_012136747v1 4999830 224 - 6317780 I e micMur3.chr7 5639062 388 + 108171978 I a score=253206.000000 s hg38.chr22_GL383582v2_alt 13749 20 + 162811 TGAAAACCAGCCCAGAATTT s panTro5.chr22 28770367 20 + 37823149 TGAAAACCAGCCCAGAATTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41075303 20 + 50109623 TGAAAACCAGCCCAGAATTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3047317 20 + 4464012 TGAAAACCAGCCCAGAATTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106577128 20 - 115148730 TGAAAACCAGCCCAGAATTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84200444 20 + 92844088 TGAAAAGCAGACcagaattt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87545466 20 - 96509753 TGAAAAGCAGACcagaattt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7033573 20 - 13098629 TGAAAAGCAGACcagaattt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4005035 20 - 4483953 TGAAAAGCAGACcagaattt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24631436 20 + 33263144 TGAAAAGCAGACcagaattt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901974 20 - 14338769 TGAAAAGCAGACCAGAATTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847751 20 + 1946073 TGAAAAGCAGACCAGAATTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1889224 20 - 2117846 TGAAAACCAGTCCAGAATTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805946 20 - 16357246 TGAAAACCAGTCCAGAATTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1277636 20 - 1807191 TGAAAACCAGTCCAGAATTT i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5639450 20 + 108171978 TGAAAAGCAGCCCAGAATTC i micMur3.chr7 I 388 C 0 s proCoq1.NW_012136747v1 5000054 20 - 6317780 TGAAAAGCAGCCCAGAATTC i proCoq1.NW_012136747v1 I 224 C 0 s otoGar3.GL873526 36253701 20 - 42659167 GGAACAGCAGCCCAGTTTTT i otoGar3.GL873526 I 1 I 1542 s canFam3.chr10 46048205 20 - 69331447 TGAAAAGCAGCCCAGAGATG i canFam3.chr10 I 2 C 0 a score=687061.000000 s hg38.chr22_GL383582v2_alt 13769 72 + 162811 GGAAGCTGGAAGGAACTTTAG-ATCGTCCATTCTGAGTGTCTCT--CTTCGCTGGCGTTTTCCCACTGAGGTTAT s panTro5.chr22 28770387 72 + 37823149 GGAAGCTGGAAGGAACTTTAG-ATCGTCCATTCTGAGTGTCTCT--CTTCGCTGGCGTTTTCCCACTGAGGTTAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41075323 72 + 50109623 GGAAGCTGGAAGGAACTTTAG-ATCGTCCATTCTGAGTGTCTCT--CTTCGCTGGCGTTTTCCCACTGAGGTTAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3047337 71 + 4464012 GGAAGCTGGAAGGAAC-TTAG-ATCTTCCATTCTGAGTGTCTCT--CTTCGCTGGCGTTTTCCCACTGAGGTTAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106577148 72 - 115148730 GGAAGCTGGAAGGAACTTTAG-ATCCTCCCTTCTGGGTGTCTCT--CTTCGCTGGCGTTTTCCCGCTGAGGTTGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84200464 63 + 92844088 ggaagctggaaggaaccttag-atcgtccattcTGGGTGTCTCT--CTTCGCTGGCGTTTTCCCAC--------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87545486 63 - 96509753 ggaagctggaaggaaccttag-atcgtccattcTGGGTGTCTCT--CTTCGCTGGCGTTTTCCCAC--------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7033593 63 - 13098629 ggaagctggaaggaaccttag-atcgtccattcTGGGTGTCTCT--CTTCGCTGGCGTTTTCCCAC--------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4005055 63 - 4483953 ggaagctggaaggaaccttag-atcgtccattcTGGGTGTCTCT--CTTCGCTGGCGTTTTCCCAC--------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24631456 63 + 33263144 ggaagctggaaggaaccttag-atcgtccattcTGGGTGTCTCT--CTTTGCTGGCGTTTTCCCAC--------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13901994 63 - 14338769 GGAAGCTGGACGGAACCTTAG-ATCGTCCATTCTGGGTGTCTCT--CTTCGCTGGCGTTTTCCCAC--------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847771 58 + 1946073 GGAAGCTGGAAGGA-----AG-ATCGTCCATTCTGGGTCTCTCT--CTTCGCTGGCGTTTTCCCAC--------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1889244 70 - 2117846 GGAAGCTGGAAGGAACCTTAG-AGCGTCCATTCTGGGTG--TCT--CTTCGCTGGCGTTTTCCCACTGACGTTAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8805966 70 - 16357246 GGAAGCTGGGAGGAACCTTAG-CGCGTCCATTCTGGGCG--TTT--CTTCGCCGGCGTTTTCCCGCTGAGGTTAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1277656 70 - 1807191 GGAAGCTGGAAGGAACCTTAG-AGCGTCCATTCTGGGTG--TCT--CTTCGCCGGCGTTTTCCCACTGAGGTTAT i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5639470 74 + 108171978 TGAAGCTGGAAGGAGCCTTAG-ATTGTCCATTCTGGGTGTCTCTTGCTTTGCTGGCATTTTCCCACTGAGGTTAT i micMur3.chr7 C 0 I 56144 s proCoq1.NW_012136747v1 5000074 74 - 6317780 TGAAGCTGGAAGGAGCCTTAG-ATTGTCCGTTCTGGGTATCTTTCGCTTTGGTGGCATTTTCCCACTGAGGTTAT i proCoq1.NW_012136747v1 C 0 I 341 s canFam3.chr10 46048225 67 - 69331447 -GGAGGTGGAAGGAGCCTTGGCATCGACCACCCCGGGGA-------CCCCGCTGGCACTTTTCTACGGAGGTTGC i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36253721 1542 - 42659167 I a score=1416828.000000 s hg38.chr22_GL383582v2_alt 13841 187 + 162811 --GTAAACATGAAGAGG----AGCCTACAAGTGTCAAGG-AAAAAACGACAGCTAACCACAGGGCAGGCCATGGGCAAGATATCTCAGTGTTCTCCGCTCTCATAGGTCaggtaggtacc-tcagcatccccattttacaggtgaggaaactgagatggcccagagtctaggtcacctgACAGATCG------CCCCCACC s panTro5.chr22 28770459 188 + 37823149 --GTAAACATGAAGAGG----AGCCTACAAGTGTCAAGG-AAAAAACGACAGCTAACCACAGGGCAGGCCATGGGCAAGATATCtcagtgttctccgctctcataggtcaggtaggtaccatcagcatccccattttacaggtgaggaaactgagatggcccagagtctaggtcacctgacagatcg------cCCCCACC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41075395 188 + 50109623 --GTAAACATGAAGAGG----AGCCTACAAGTGTCAAGG-AAAAAACGACAGCTAACCACAGGGCAGGCCATGGGCAAGATATCTCAGTGTTCTCCGCTCTCATGGGTCaggtaggtaccatcagcatccccattttacaggtgaggaaactgagatggcccagagtctaggtcacctgacagatcg------cCCCCACC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3047408 183 + 4464012 --GTAAACATGAAGAGA----AGCCTACAAGTGTCAAGG-AGAAAACGACAGCTAACCACAGGGCAGGCCATGGGCAAGATATCT--GTGTTCTCCGCTCTCATAGGTCaggtaggtaccatcagcatccccattttacaggtgaggaaactgaggtgg-ccagagtctaggtca-ctgacagatcg-------cccCACC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106577220 189 - 115148730 --GTAAACATGAAGAGG----AGTCTACAAGTGTCAAGG-AGAAAACGACAGCTAACCAAACGGCAGGCCATGGGCAAGATATCTCAGTGTTCTCTGCTCTCATAGGTCaggtaggtaccatcagtatccccattttacaggtgaggaaactgaggtggcccagagtctaggtcacctgacagatcg-----cCCCCCACC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84200527 178 + 92844088 -----------GAGAGG----AACCTACAAGTGTCAAGG-AAAAAAGGACAGCTAACCACAGGGCAGGCCACGGGCAAGATATCTCAGTGTTCTCCGCTCTCA--GGTCaggtaggtaccgtcggcatccccattttacagatgaggaaactcaggtgggccggagtctaggtcacgtgacAGATCG-----CCCCCCACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87545549 178 - 96509753 -----------GAGAGG----AACCTACAAGTGTCAAGG-AAAAAAGGACGGCTAACCACAGGGCAGGCCACGGGCAAGATATCTCAGTGTTCTCCGCTCTCA--GGTCaggtaggtaccgtcggcatccccattttacagatgaggaaactcaggtgggccggagtctaggtcacgtgacAGATCG-----CCCCCCACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7033656 178 - 13098629 -----------GAGAGG----AACCTACAAGTGTCAAGG-AAAAAAGGACAGCTAACCACAGGGCAGGCCACGGGCAAGATATCTCAGTGTTCTCCGCTCTCA--GGTCaggtaggtaccgtcggcatccccattttacagatgaggaaactcaggtgggccggagtctaggtcacgtgacAGATCG-----CCCCCCACC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4005118 178 - 4483953 -----------GAGAGG----AACCTACAAGTGTCAAGG-AAAAAAGGACAGCTAACCACAGGGCAGGCCACGGGCAAGATATCTCAGTGTTCTCCGCTCTCA--GGTCaggtaggtaccgtcggcatccccattttacagatgaggaaactcaggtggcccagagtctaggtcacgtgacAGATCG-----CCCCCCACC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24631519 178 + 33263144 -----------GAGAGG----AACCTACAAGTGTCAAGG-AAAAAAGGACAGCTAACCACAGGGCAGGCCACGGGCAAGATATCTCAGTGTTCTCCGCTCTCA--GGTCaggtaggtaccgtcggcatccacattttacagatgaggaaactcaggtggcccagagtctaggtcacgtgacAGATCG-----CCCCCCACC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13902057 178 - 14338769 -----------GAGAGG----AACCTACAAGTGTCAAGG-AAAAAAGGACAGCTAACCACAGGGCAGGCCACGGGCAAGATATCTCAGTGTTCTCCGCTCTCA--GGTCaggtaggtaccgtcggcatccccattttacagatgaggaaactcaggtggcccagagtctaggtcacgtgacAGATCG-----CCCCCCACC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 847829 178 + 1946073 -----------GAGAGG----AACCTACAAGTGTCAAGG-AAAAAAGAACAACTAACCACAGGGCAGGCCACGGGCAAGATATCTCAGTGTTCTCCGCTCTCA--GGTCaggtaggtaccgtcagcatccccattttacaggtgaggaaactcaggtggcccagagtctaggtcacctgacagatcg-----cCCCCCACC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1889314 187 - 2117846 --GTAAACGTCAAGAGG----AGCCTAGAAGTGTAAAGG-AAAAAAGGACAGCTAACCACAGGGCAGACCGTGGGCAAGATACCTTCGTGTTCTCCGCTCTCAtaggtcaggtaggtaccgtcagcgtccccgtttgacaggtgaggaaactgaggtggcccagagtgcaggtcacgggacAGATC-------CCCCAACC i calJac3.chrUn_GL286373 C 0 I 8 s saiBol1.JH378157 8806036 186 - 16357246 --GTAAACATCAAGAGG----AACGTGGAAGTGTAAAGGAAAAAAAGGACAGCTAACCACAGGGCAGACCGTGGGCAAGATACCCGCGTGTTTTCCGCTCTCAtaggtcaggtaggtaccgtcagcgtccccgtttgacaggtgaggaaac--aagtggcccagagtccaggtcacgggacAGATC-------CCCCCAAC i saiBol1.JH378157 C 0 I 1296 s cebCap1.NW_016107750v1 1277726 187 - 1807191 --GTAAACATCAAGAGG----AGCCTAGAAGTGTAAAGG-AAAAAAGGACGGCTAACCACAGGGCAGACCGTGGGCAAGATACCTTCGTGTTCTCCGCTCTCATAGGTCaggtaggtaccgccagagtccccgtttgacaggtgaggaaactgaggtggcccagagTCCGGGTCACGGGACAGATC-------cccccaac i cebCap1.NW_016107750v1 C 0 I 30 s canFam3.chr10 46048292 138 - 69331447 CTCTGACCCTCCGGGTGCCCCGCCCCGGGCGTGCGAAGG-GAGAGAAAACAGCT---------------------------------------------------GGGTCGGGAGGTTCCGTTAG----CCCAGGGAgcgggggggggg----ggggggggcAGGGTCTAGGTCACGTGCC---CCGCGCAGCCCCTTACG i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000148 341 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I a score=717607.000000 s hg38.chr22_GL383582v2_alt 14028 94 + 162811 --TGCCTGACTGCTGCCTAAGAGGCTCCGTCTTTTTCTGAAGGTGTAGTTGACAG-GAGCC----TGTGAGTATTGGGGAAGGGCCA-GGGGCCGGGGCTGA s panTro5.chr22 28770647 94 + 37823149 --TGCCTGACTGCTGCCTAAGAGGCTCCGTCTTTTTCTGAAGGTGTAGTTGACAG-GAGCC----TGTGAGTATTGGGGAAGGGCCA-GGGGCCGGGGCTGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41075583 94 + 50109623 --TGCCTGACTGCTGCCTAAGAGGCTCCGTCTTTTTCTGAAGGTGTAGTTGACAG-GAGCC----TGTGAGTATTGGGGAAGGGCCA-GGGGCCGGGGCTGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3047591 94 + 4464012 --TGCCTGACTCCTGCCTAAGAGGCTCCGTCTTTTTCTGAAGGTGTAGTTGACAG-GAGCC----TGTGAGTATTGGGGAAGGGCCA-GGGGCCAGGGCTGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106577409 94 - 115148730 --TGCCTGACTCCTGCCTAAGAGTCTCCGTCTTTTTCTGAAGGTGCAGTTGACAG-GAGCC----TGTGAGTATTGGGGAAGGGCCA-GGGGCCAGGGCTGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84200705 94 + 92844088 --TGCCTGACTCCTGCCTAAGAGTCTCGGTCTTTTTCTGAAGGTGCAGTTGACAG-GAGCC----TGTGAGTACTGGGGAAGGGCCA-GGGGCCAGGACTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87545727 94 - 96509753 --TGCCTGACTCCTGCCTAAGAGTCTCGGTCTTTTTCTGAAGGTGCAGTTGACAG-GAGCC----TGTGAGTACTGGGGAAGGGCCA-GGGGCCAGGACTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7033834 94 - 13098629 --TGCCTGACTCCTGCCTAAGAGTCTCGGTCTTTTTCTGAAGGTGCAGTTGACAG-GAGCC----TGTGAGTACTGGGGAAGGGCCA-GGGGCCAGGACTGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4005296 94 - 4483953 --TGCCTGACTCCTGCCTAAGAGTCTCGGTCTTTTTCTGAAGGTGCAGTTGACAG-GAGCC----TGTGAGTACTGGGGAAGGGCCA-GGGGCCAGGACTGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24631697 94 + 33263144 --TGCCTGACTCCTGCCTAAGAGTCTCGGTCTTTTTCTGAAGGTGCAGTTGACAG-GAGCC----TGTGAGTACTGGGGAAGGGCCA-GGGGCCGGGACTGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13902235 94 - 14338769 --TGCCTGACTCCTGCCTAAGAGTCTCGGTCTTTTTCTGAAGGTGCAGTTGACAG-GAGCC----TGTGAGTACTGGGGAAGGGCCA-GGGGCCAGGACTGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 848007 94 + 1946073 --TACCTGACTCCTGCCTAAGAGTCTCGGTCTTTTTCTGAAGGTGCAGTTGACGG-GAGCC----TGTGAGTACTGGGGAAGGGCCA-GGGGCCAGGACTGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1889509 93 - 2117846 --AACCCGACTCCTGCCTAAGAGTCTCGG-TTTTTTCTGAAGGTGCAATTGACAG-GAGCC----TGTGAGTACTGGGGAAGGGGCC-GGGGCCAGGGCTGA i calJac3.chrUn_GL286373 I 8 C 0 s cebCap1.NW_016107750v1 1277943 95 - 1807191 --cGCCTGACTCCTGCCTAAGAGTCTCGGCTTTTTTCTGAAGGTGCAATTGACAG-GAGTC----TGTGAGTATTGGGGAAGGGGCCAGGGGCCAGGGCTGA i cebCap1.NW_016107750v1 I 30 C 0 s canFam3.chr10 46048430 84 - 69331447 CGCGCCC-CCCGCCGCCCCAGAGAC-----------CTGGCGGGCCGCTCGGGAGCGAGCTGCGGTGCGAGT-CCGAGCCAGCGC---GGGGCATGGCCT-- i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000148 341 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8806222 1296 - 16357246 I a score=1025171.000000 s hg38.chr22_GL383582v2_alt 14122 134 + 162811 GC----------ATCTACTCCAAACTTTCCCATTTCGAAGGGTTAAAAAACCAGATATACTTT---------------------TTTTCTTCCTTATTATCTTCTAAAATGTATATATATATTCAAGTGAGCTatac---aaaagaaagcacgtaacatatataaatt s panTro5.chr22 28770741 133 + 37823149 GC----------ATCTACTCCAAACTTTCCCATTTCGAAGGGTTAAAAAACCAGATATAC-TT---------------------TTTTCTTCCTTATTATCTTCTAAAATGTATATATATATTCAAGTGAGCTATAC---AAAAGAAAGCACGTAACATATATAAATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41075677 133 + 50109623 GC----------ATCTACTCCAAACTTTCCCATTTCGAAGGGTTAAAAAACCAGATATAC-TT---------------------TTTTCTTCCTTATTATCTTCTAAAATGTATATATATATTCAAGTGAGCTATAC---AAAAGAAAGCACGTAACATATATAAATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3047685 132 + 4464012 GC----------ATCTACTCCAAACTTTCCCATTTCGAAGGGTTAAAAAATCAGATATAC--T---------------------TTTTCTTCCTTATTATCTTCTAAAATGTATATATATATTCAAGTGAGCTGTAC---AAAAGAAAGCACGTAACATGTATAAATT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106577503 133 - 115148730 GC----------ATCTACTCCAAACTTTCCCATTTCGAAGGGTTAAAAAACCAGATATAC-TT---------------------TTTTCTTCGTTATTATCTTCTAAAATGTATATGTATATTCAAGTGAGCTatac---aaaagaaagcacgtaacatatataaatt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84200799 139 + 92844088 GCTTACCCCTGCATCTAGTCCAAACTTTCCCATTTCGAAGGTTTAAAAGACCAGATATAC-TT---------------------TTTT----CTTATTATCTTCTAAAATGTATATGTATATTCAAGTGAGCTATAA---AAAAGGAAGCACGTAACATACATAAAGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87545821 143 - 96509753 GCTTACCCCTGCATCTAGTCCAAACTTTCCCATTTCGAAGGTTTAAAAGACCAGATATAC-TT---------------------TTTTCTTCCTTATTATCTTCTAAAATGTATATGTATATTCAAGTGAGCTATAA---AAAAGGAAGCACGTAACATACATAAAGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7033928 143 - 13098629 GCTTACCCCTGCATCTAGTCCAAACTTTCCCATTTCGAAGGTTTAAAAGAACAGATATAC-TT---------------------TTTTCTTCCTTATTATCTTCTAAAATGTATATGTATATTCAAGTGAGCTATAA---AAAAGGAAGCACGTAACATACATAAAGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4005390 143 - 4483953 GCTTACCCCTGCATCTAGTCCAAACTTTCCCATTTCGAAGGTTTAAAAGACCAGATATAC-TT---------------------TTTTCTTCCTTATTATCTTTTAAAATGTATATGTATATTCAAGTGAGCTATAA---AAAAGGAAGCACGTAACATACATAAATT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24631791 143 + 33263144 GCTTACCCCTGCATCTAGTCCAAACTTTCCCATTTCGAAGGTTTAAAAGACCAGATATAC-TT---------------------TTTTCTTCCTTATTATCTTCTAAAATGTTTATGTATATTCAAGTGAGCTATAA---AAAAGGAAGCACGTAACATACACAAATT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13902329 139 - 14338769 GCTTACCCCTGCATCTAGTCCAAACTTTCCCATTTCGAAGGTTTAAAAGACCAGATACAC-TT---------------------TTTTCTTCCTTATTATCTTTTAAAATG----TATATATTCAAGTGAGCTATAA---AAAAGGAAGCACGTAACATACATAAATT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 848101 143 + 1946073 GCTTACCCCTGTATCTAGTCCAAACTTTCCCATTTCGAAGGGTTAAAAGACCAGATGTAC-TT---------------------TTTTCTTCCTTATTATCTTCTAAAATGTATGTGTATATTCAAGTGAGCTATAA---AAAAGGAAGCACATAACACACATAAATT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1889602 137 - 2117846 GC--TACCCTGCATCTAGTCCAAACTTTCCCATTTTGAAGGGTTAAAAAACTAGATGTAC-TT---------------------TTTACTTCCCTATTGTCTTCCAAAATG--CATGTATACTCAAGTGAGCTATAC---AAAAGAAAGCATGTAAC--ATGTAAATT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1278038 107 - 1807191 GC-TTACCCTGCATCTAGTCCAAACTTTCCCATTTTGAAGGGTTAAAAAACCAGATGTAC-TT--------------------------------------------------------TACTCAAGTGAGCTatac---aaaagaaagcatgtaacatatgtaaatt i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5000489 121 - 6317780 ----------GCATCTAGCCCAATCTTTCCCGTTTTAAAGGGTAAAAGAATCAGATGTCT-TT---------------------TTTTCTTCTTTATTATCTTTTAAAATGTATTTGTATATTTAAATGAGTTATAC---CA------------AACGTATATAAATT i proCoq1.NW_012136747v1 I 341 C 0 s canFam3.chr10 46048514 157 - 69331447 ----------GCGTCTCTCCAAGGCTTCCCCGTTTTAAAGGGAAatacatacatacatac-atacatacatacatacatacCGATCTGTCTCTGTATTACCTTTTAAAATGTTTCTGTGCGTTTAAGTGAGTTATGCTTTAAAAAGAGGCATGCACCACATACAAGTT i canFam3.chr10 C 0 I 183 e otoGar3.GL873526 36253721 1542 - 42659167 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8806222 1296 - 16357246 I a score=1430791.000000 s hg38.chr22_GL383582v2_alt 14256 167 + 162811 ataaagcataataataaaat--ggaagcttttgaacctcagtactgacttaagaaGTTGTAACACAGTTAAGGTTTGTATAAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttctctaggt------acattaacttggctaggcttcacaacacaccagtgagat s panTro5.chr22 28770874 167 + 37823149 ATAAAGCATAATAATAAAAT--GGAAGCTTTTGAACCTCAGTACTGACTTAAGAAGTTGTAACACAGTTAAGGTTTGTATAAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttctctaggt------acattaacttggctaggcttcacaacacaccagtgagat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41075810 167 + 50109623 ATAAAGCATAATAATAAAAT--GGAAGCTTTTGAACCTCAGTACTGACTTAAGAAGTTGTAACACAGTTAAGGTTTGTATAAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttctctaggt------acattaacttggctaggcttcacaacacaccagtgagat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3047817 163 + 4464012 ATAAAGCATAATAATAAAAT--GGAAGCTTTTGAACCTCAGTACTG----AAGAAGTTGTAACACAGTCAAGGTTTGTATAAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttctctaggt------acattaacttggctaggcttcacaacacaccagtgagat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106577636 167 - 115148730 ataaagcataataataaaat--ggaagcttttgaacctcagtactgacttaagaaGTTGTAACACAGTTAAGGTTTGTATAAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttctctaggt------acattaacttggctaggcctcacaacacaccagtgagat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84200938 167 + 92844088 ATAAAGCATAATAATAAAAT--GGAAGCTTTTGAACTTCAGTACTGACTTAAGAAGTTGTAACACACTTAAGGTTTATATGAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttttctaggt------acattaacttggctaggccccacaacacaccagtgagat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87545964 167 - 96509753 ATAAAGCATAATAATAAAAT--GGAAGCTTTTGAACTTCAGTACTGACTTAAGAAGTTGTAACACACTTAAGGTTTATGTGAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttttctaggt------acattaacttggctaggccccacaacacaccagtgagat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7034071 167 - 13098629 ATAAAGCATAATAATAAAAT--GGAAGCTTTTGAACTTCAGTACTGACTTAAGAAGTTGTAACACACTTAAGGTTTATATGAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttttctaggt------acattaacttggctaggccccacaacacaccagtgagat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4005533 167 - 4483953 ATAAAGCATAATAATAAAAT--GGAAGCTTTTGAACTTCAGGACTGACTTAAGAAGTTGTAACACACTTAAGGTTTATATGAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttttctaggt------acattaacttggctatgccccacaacacaccagtgagat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24631934 164 + 33263144 ATAAAGC---ATAATAAAAT--GGAAGCTTTTGAACTTCAGTACTGACTTAAGAAGTTGTAACACACTTAAGGTTTATATGAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttttctaggt------acattaacttggctaggccccacaacacaccaatgagat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13902468 167 - 14338769 ATAAAGCATAATAATAAAAT--GGAAGCTTTTGAACTTCAGGACTGACTTAAGAAGTTGTAACACACTTAAGGTTTATATGAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttttctaggt------acattaacttggctaggccccacaacacaccagtgagat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 848244 167 + 1946073 ATAAGGCATAATAATAAAGT--GGAAGCTTTTGAACCTCAGTACTGACTTAAGAAGTTGTAACACACTTAAGGTTTATATAAAGTGTCCTTAGATGTCCTTAGTAGCCACTGTTCTCTAGTTTTCTAGGT------ACATGAACTTGGCTAGGCCCCACAACACACCAGTGAGAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1889739 170 - 2117846 TAAAAGCGTAATGGTAAAAT--GGAAGCTTTCGAACCTCAGTGCCAACTTAAGAAGCTGTA--ACAGTAAAGGGTTACATAAAGTGTCCTTAGATGTCCTCAGTAGCCGGCGTTCTCTAGTTCTTTAGGtacattaacattaacttgtctaagcctcccaaca-accagagagag i calJac3.chrUn_GL286373 C 0 I 1 s cebCap1.NW_016107750v1 1278145 162 - 1807191 taaaagcataatggtaaaat--ggaagctttcgaacctcagtaccaacttaagaagctgta--acagtaAAGGTTTACATAAAGTGTCCTTAGATGTCCTTAGTAGCCGGtattctctagttctttaggt--------attaacttgtctaagcctcccaaca-accagttagat i cebCap1.NW_016107750v1 C 0 I 1 s proCoq1.NW_012136747v1 5000610 159 - 6317780 ATAAAGCATAATAACAAA-T--GGAAACTTTTGAATCCCAGTACCAAGTT---AAGTCGtaatacagttaaggtttatataaagtgta---ggatgtccttggtagccactgttct-tagttttctagat------acattaatttgtttaagcctcacaacacacctgtgagat i proCoq1.NW_012136747v1 C 0 I 34939 s canFam3.chr10 46048854 163 - 69331447 ataaaGCATGATAATAAGATCATGAAACTTTGAAACC-----ACGACCTTAAGAAGTGGtgatagagttaaggtttgtataagcattactgtgttcttctccacagccactggtct-aagttctccaggc------acactcacattttcatgcagcacaacacacctgtgggat i canFam3.chr10 I 183 I 1 e otoGar3.GL873526 36253721 1542 - 42659167 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8806222 1296 - 16357246 I a score=65752.000000 s hg38.chr22_GL383582v2_alt 14423 17 + 162811 tgtgttgatataccc-----tt-- s panTro5.chr22 28771041 15 + 37823149 tgtgttgatataccc--------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41075977 15 + 50109623 tgtgttgatataccc--------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3047980 18 + 4464012 tgtgttgatatactt----ttt-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106577803 22 - 115148730 agtgttgatatacccttttttt-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84201105 18 + 92844088 aATGTTGATATATCC----ttt-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87546131 18 - 96509753 aATGTTGATATATCC----ttt-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7034238 17 - 13098629 aATGTTGATATATCC-----tt-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4005700 15 - 4483953 agtgttgatatatcc--------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24632098 15 + 33263144 agTGTTGATATATCC--------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13902635 15 - 14338769 agTGTTGATATATCC--------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 848411 22 + 1946073 AGTGTTGATATATCCTTTtttt-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1889910 17 - 2117846 agtgttgatataccc----cc--- i calJac3.chrUn_GL286373 I 1 I 1 s cebCap1.NW_016107750v1 1278308 17 - 1807191 agtgttgatatactc----tt--- i cebCap1.NW_016107750v1 I 1 I 37 s canFam3.chr10 46049018 17 - 69331447 agtcctgttagaccc-------ac i canFam3.chr10 I 1 C 0 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8806222 1296 - 16357246 I a score=152424.000000 s hg38.chr22_GL383582v2_alt 14440 30 + 162811 ttttttttttttttttgagacagagtgaga s panTro5.chr22 28771056 30 + 37823149 ttttttttttttttttgagacagagtgaga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41075992 30 + 50109623 ttttttttttttttttgagacagagtgaga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3047998 30 + 4464012 ttttttttttttttttgagacagagtgaga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106577825 30 - 115148730 ttttttttttttttttgagacagagtgaga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84201123 30 + 92844088 ttttttttttttttttgagacagagtgaga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87546149 30 - 96509753 ttttttttttttttttgagacagagtgaga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7034255 30 - 13098629 ttttttttttttttttgagacagagtgaga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4005715 28 - 4483953 tttttttgttgttgttgagac--agtgaga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24632113 30 + 33263144 ttttttttttttttttgagacagagtgaga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13902650 26 - 14338769 --ttttttttttttttgagac--agtgaga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 848433 28 + 1946073 tttcttttttttttttgagac--agagaga i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1889928 23 - 2117846 ccctttttttttttttgagacat------- i calJac3.chrUn_GL286373 I 1 I 9 s canFam3.chr10 46049035 13 - 69331447 -------tttacagatgaga---------- i canFam3.chr10 C 0 I 52 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1278325 37 - 1807191 I e saiBol1.JH378157 8806222 1296 - 16357246 I a score=6600.000000 s hg38.chr22_GL383582v2_alt 14470 1 + 162811 c s panTro5.chr22 28771086 1 + 37823149 c i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076022 1 + 50109623 c i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048028 1 + 4464012 c i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106577855 1 - 115148730 c i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84201153 1 + 92844088 c i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87546179 1 - 96509753 c i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7034285 1 - 13098629 c i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4005743 1 - 4483953 c i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24632143 1 + 33263144 c i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13902676 1 - 14338769 c i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 848461 1 + 1946073 c i colAng1.NW_012115588v1 C 0 C 0 e canFam3.chr10 46049048 52 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1278325 37 - 1807191 I e saiBol1.JH378157 8806222 1296 - 16357246 I e calJac3.chrUn_GL286373 1889951 9 - 2117846 I a score=192328.000000 s hg38.chr22_GL383582v2_alt 14471 27 + 162811 tcacctagg-ctggactgcaatggtgca s panTro5.chr22 28771087 27 + 37823149 tcacctagg-ctggactgcaatggtgca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076023 27 + 50109623 tcacctagg-ctggactgcaatggtgca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048029 27 + 4464012 tcacctagg-ctggactgcaatggtgca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106577856 27 - 115148730 tcacctagg-ctggactgcaatggtgca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84201154 27 + 92844088 tcacctaga-ctggactgcaatggtgcA i rheMac8.chr10 C 0 I 2935 s macFas5.chr10 87546180 27 - 96509753 tcacctaga-ctggactgcagtggtgcA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7034286 27 - 13098629 tcacctaga-ctggactgcaatggtgcA i macNem1.NW_012012688v1 C 0 I 23903 s cerAty1.NW_011999588v1 4005744 27 - 4483953 tcacctagg-ctggactgcaatggtgca i cerAty1.NW_011999588v1 C 0 I 2347 s chlSab2.chr19 24632144 27 + 33263144 tcacctagg-ctggactgcaatggtgcA i chlSab2.chr19 C 0 I 2665 s manLeu1.NW_012102031v1 13902677 27 - 14338769 tcacctagg-ctggactgcaatggtgca i manLeu1.NW_012102031v1 C 0 I 16121 s colAng1.NW_012115588v1 848462 27 + 1946073 ttacctagg-ctggactgcaatggtgcA i colAng1.NW_012115588v1 C 0 I 26499 s calJac3.chrUn_GL286373 1889960 28 - 2117846 ttgaccaggcctggagttcagtggcgcc i calJac3.chrUn_GL286373 I 9 C 0 s cebCap1.NW_016107750v1 1278362 27 - 1807191 ttgctcagg-ctggagtgcaatggcgcc i cebCap1.NW_016107750v1 I 37 C 0 e canFam3.chr10 46049048 52 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8806222 1296 - 16357246 I a score=4242.000000 s hg38.chr22_GL383582v2_alt 14498 2 + 162811 at s panTro5.chr22 28771114 2 + 37823149 at i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076050 2 + 50109623 at i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048056 2 + 4464012 at i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106577883 2 - 115148730 at i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87546207 2 - 96509753 GT i macFas5.chr10 C 0 I 3048 s calJac3.chrUn_GL286373 1889988 2 - 2117846 at i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1278389 2 - 1807191 at i cebCap1.NW_016107750v1 C 0 C 0 e canFam3.chr10 46049048 52 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8806222 1296 - 16357246 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e rheMac8.chr10 84201181 2935 + 92844088 I a score=253002.000000 s hg38.chr22_GL383582v2_alt 14500 125 + 162811 ctcggctcactgcaacctccgcctctcatgttcaagccattctcctgcctcagctttccgaatcgctgggattacaggtgcgcaccaccatgcatggctaatgcttgtattttagtagagacggg s panTro5.chr22 28771116 125 + 37823149 ctcggctcactgcaacctccgcctctcgtgttcaagccattctcctgcctcagctttccgaatcgctgggattacaggtgcgcaccaccatgcatggctaatgcttgtattttagtagagatggg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076052 125 + 50109623 cttggctcactgcaacctccgcctctcgtgttcaagccattctcctgcctcagctttccgaatcgctgggattacaggtgcgcaccaccatgcatggctaatgcttgtattttagtagagatggg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048058 121 + 4464012 ctcggctcactgcaacc----actctcgggttcaagccattctcctgcctcagccttccgaatcgctgggattacaggtgcgcaccaccatgcatggctaatgcttgtattttagtagagacggg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106577885 125 - 115148730 ctcggctcactgcaacctccgcctctcgggttcaagccattctcctgcctcagccttccgaatcgctgggattaccggtgcgcaccaccatgcatggctaatgcttgtattttagtagagacggg i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 8963171 116 + 96509753 cttggtgcactgcaacctctgcctcccagggtcaagtgattcttccatctcagcctcccgagtagctgggattacaggcac-catcatcatgcccagcta--------atttttgtagagatgcg i macFas5.chr10 n 3048 C 0 s calJac3.chrUn_GL286373 1889990 125 - 2117846 ctcggctcaccgcaacctcagcctcccaggttcaagcgattttcctgcctcagcctcccgaatcgctgggattacaggtgcgcaccaccatgccctgctaatttttctattttagtagaaacagg i calJac3.chrUn_GL286373 C 0 I 34 s cebCap1.NW_016107750v1 1278391 125 - 1807191 ctgggctcactgcaatctccgcctcccaggttcaagcgattttccggcctcagcctcctgaatcgctgggattacaggtgcgcaccatcatgccccgctaatttttgtattttagtagagacagg i cebCap1.NW_016107750v1 C 0 C 0 e canFam3.chr10 46049048 52 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8806222 1296 - 16357246 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e rheMac8.chr10 84201181 2935 + 92844088 I a score=5682.000000 s hg38.chr22_GL383582v2_alt 14625 9 + 162811 ---gttttgcta s panTro5.chr22 28771241 9 + 37823149 ---gttttgcta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076177 9 + 50109623 ---gttttgcta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048179 9 + 4464012 ---gttttgcca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106578010 9 - 115148730 ---gttttgcca i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 8963287 9 + 96509753 ---ttttcacca i macFas5.chr10 C 0 C 0 s cebCap1.NW_016107750v1 1278516 9 - 1807191 tgacctcta--- i cebCap1.NW_016107750v1 C 0 I 25 e canFam3.chr10 46049048 52 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8806222 1296 - 16357246 I e calJac3.chrUn_GL286373 1890115 34 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e rheMac8.chr10 84201181 2935 + 92844088 I a score=13850.000000 s hg38.chr22_GL383582v2_alt 14634 10 + 162811 tgttggccag s panTro5.chr22 28771250 10 + 37823149 tgttggccag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076186 10 + 50109623 tgttggccag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048188 10 + 4464012 tgttggccag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106578019 10 - 115148730 cgttggccag i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 8963296 10 + 96509753 tgttggccag i macFas5.chr10 C 0 C 0 e canFam3.chr10 46049048 52 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1278525 25 - 1807191 I e saiBol1.JH378157 8806222 1296 - 16357246 I e calJac3.chrUn_GL286373 1890115 34 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e rheMac8.chr10 84201181 2935 + 92844088 I a score=16083.000000 s hg38.chr22_GL383582v2_alt 14644 9 + 162811 gctggtctc s panTro5.chr22 28771260 9 + 37823149 gctggtctc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076196 9 + 50109623 gctggtctc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048198 9 + 4464012 gctggtctc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106578029 9 - 115148730 gctggtctc i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 8963306 9 + 96509753 gctggtctt i macFas5.chr10 C 0 C 0 s canFam3.chr10 46049100 9 - 69331447 gctggcccc i canFam3.chr10 I 52 C 0 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1278525 25 - 1807191 I e saiBol1.JH378157 8806222 1296 - 16357246 I e calJac3.chrUn_GL286373 1890115 34 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e rheMac8.chr10 84201181 2935 + 92844088 I a score=175605.000000 s hg38.chr22_GL383582v2_alt 14653 93 + 162811 -aaactcctgactt--------caggtgatccacccacctcagcctcccaaagtgctgggattacaggtgtgagccactg----cccccggctgatatactcattt s panTro5.chr22 28771269 93 + 37823149 -aaactcctgactt--------caggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccaccg----cccccggctgatatactcattt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076205 93 + 50109623 -aaactcctgactt--------caggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccaccg----cccccggctgatatactcattt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048207 92 + 4464012 -gaactcctgactt--------caggtgatccacccgcctcggcctcccaaggtgctgggattacaggtgtgagccaccg-----ccccggctgatacactcattt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106578038 93 - 115148730 -gaactcctgactt--------caggtgatccaccctgctcggcctcccaaagtgctgggattacaggtttgagccaccg----cccccggccAATATACTCatct i nomLeu3.chr7b C 0 I 8734 s macFas5.chr10 8963315 93 + 96509753 -gaactcctgacct--------taggtgatacacccgccttggcctcccaaagtgctgggattacaggtgtgagccacca----cccccggctgatatactcattt i macFas5.chr10 C 0 C 0 s calJac3.chrUn_GL286373 1890149 93 - 2117846 -aaaagggtgacct--------caagtgatatgcccgcctcaacctaccaaaaggctgggcttacaggcgtgagccactg----cgcccagccgatataaccattt i calJac3.chrUn_GL286373 I 34 C 0 s cebCap1.NW_016107750v1 1278550 93 - 1807191 -aaaagggtgacct--------caagtgatatgcccgcctcagcctagcaaagggctgggattacaggtgtgagccactg----tgcccagccaatatacccattt i cebCap1.NW_016107750v1 I 25 C 0 s canFam3.chr10 46049109 96 - 69331447 agagtccgtgttctctctctcacag------cacctacctcAAAATACTTACCTGCCGGGGATCcccaggtggctcagtggtttaacgcggctgtca-gccca--- i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8806222 1296 - 16357246 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e rheMac8.chr10 84201181 2935 + 92844088 I a score=140873.000000 s hg38.chr22_GL383582v2_alt 14746 118 + 162811 tatagatgagaaaactgaggcacaaagagactaagtt--actttacagcattggggttgaagcccaggcagctggtgccagagtcagttt-tctGACTCTCGCAGCACCTAT-------------------------ACCATGATA s panTro5.chr22 28771362 118 + 37823149 tatagatgagaaaactgaggcataaagagactaagtt--actttacagcattggggttgaagcccaggcagctggtgccagagtcagttt-tctGACTCTCGCAGCACCTAT-------------------------ACCATGATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076298 118 + 50109623 tatagatgagaaaactgaggcataaagagactaagtt--actttacagcattggggttgaagcccaggcagctggtgccagagtcagttt-tctGACTCTCGCAGCACCTAT-------------------------ACCATGATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048299 118 + 4464012 tatagatgagaaaactgaggcacaaagagactaagtt--actttatagcattggggttgaagcccaggcagctggtgccagagtcagttt-tctGACTCTCGCAGCACCTAT-------------------------ACCATGATA i gorGor5.CYUI01015375v1 C 0 C 0 s macFas5.chr10 8963408 118 + 96509753 tatagatgagaaaactgaggcacaaagagactaagtt--actttacagcattggggttgaagcccaggcagctggtgccacagtcggttt-tctGACTCTCACAGCACCTAT-------------------------ACCATGATA i macFas5.chr10 C 0 C 0 s calJac3.chrUn_GL286373 1890242 74 - 2117846 tatagatcagaaaactgaggcacaaaaagactaaA----------------------------------------------AGTCGGTTT-TCTGACTCTCACGACACCTAT-------------------------ACCATGGTA i calJac3.chrUn_GL286373 C 0 I 1 s cebCap1.NW_016107750v1 1278643 72 - 1807191 tatagatgagaaaactgaggcac--aaagaCTAAA----------------------------------------------AGTCGGTTT-TCTGACTCTCACAACACCTAT-------------------------ACCATGATA i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46049205 143 - 69331447 ---gggtgtgatcctggagacccatggagtcccatgtcaggctccctgcatggagcctgcttctccctctgcctgtgtctctgtctgtctgtctgtctctctgtgtgtctCTCATGAATAAATGAACTGTTTAAAAAAACAAAATA i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8806222 1296 - 16357246 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e rheMac8.chr10 84201181 2935 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I a score=51923.000000 s hg38.chr22_GL383582v2_alt 14864 20 + 162811 TCTACCTGTATGATTCTAAC s panTro5.chr22 28771480 20 + 37823149 TCTACCTGTATGATTCTAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076416 20 + 50109623 TCTACCTGTATGATTCTAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048417 20 + 4464012 TCTGCCTGTATGATTTTAAC i gorGor5.CYUI01015375v1 C 0 C 0 s macFas5.chr10 8963526 20 + 96509753 TCTACCTGTGTGATTCTAAC i macFas5.chr10 C 0 n 0 s calJac3.chrUn_GL286373 1890317 20 - 2117846 ACTATCTGTGTGATTCTAAC i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8807518 20 - 16357246 TCTATCTGTGTGATTCTCAC i saiBol1.JH378157 I 1296 C 0 s cebCap1.NW_016107750v1 1278715 20 - 1807191 TTTTTCTGTGTGATTCTAAC i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46049348 20 - 69331447 CCTACCTGTCTAATTCTAAC i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e rheMac8.chr10 84201181 2935 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I a score=129143.000000 s hg38.chr22_GL383582v2_alt 14884 67 + 162811 CTTGTGTATACCCCTGCCTCCTTCAGAAGTACCCACTATCATGATAAATTCATTGTGTTCAACATTC s panTro5.chr22 28771500 67 + 37823149 CTTGTGTATACCCCTGCCTCCTTCAGAAGTACCCACTATCATGATAAATTCATTGTGTTCAACATTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076436 67 + 50109623 CTTGTGTATACCCCTGCCTCCTTCAGAAGTACCCACTATCATGATAAATTCATTGTGTTCAACATTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048437 67 + 4464012 CTTGTGTATACCCCTGCCTCCTTCAGAAGTACCCACTATCATGATAAATTCATTGTGTTCAACATTC i gorGor5.CYUI01015375v1 C 0 C 0 s calJac3.chrUn_GL286373 1890337 66 - 2117846 -CCCTCTATGCGCCTGCCTCCTTCAGAAGTACCCACTATTATAATAAATTCATTGCGTTTAACATTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8807538 66 - 16357246 -CCTTCTATGCGCCTGCCTCCTTCAGAAGTACCCTCTATCATAATAAATTCATTGTGTTTAACATTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1278735 66 - 1807191 -GCCTCTGTGCGCCTGCCTCCTTCAGAAGTACCCACTATCATAATAAATTCATTGTGTTTAACATTC i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46049368 62 - 69331447 CCCATCCATGCTCCTGTCTCCTCCAGGAGTAGCCACTATCATG---AATTTA--GAGCTTAAGATTC i canFam3.chr10 C 0 I 192 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 8963546 0 + 96509753 I e rheMac8.chr10 84201181 2935 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I a score=466928.000000 s hg38.chr22_GL383582v2_alt 14951 297 + 162811 ------------------------AAAAAAAAAATGgggcgcagtggctcactcctgtaatcccaacactttgggaggccaaggcaggtgtatcacctgatgtcaggagttcgagaccagcctggccaacatggtgaaacccccgtctctactaaaaatacaaaaattagcc-ggcatggtggtgggcacctgtaatctcagctactcgggaggctgaggcaggaggatcgcttgagcccgcgaggtggaggttgcggtgagccaagattgcgccgctggactccagtctgggcgacagagtgagaccctgtctc---------------------------------------------------------------------------------aaaagga s panTro5.chr22 28771567 295 + 37823149 -------------------------AAAAAAAAATGgggcgcagtggctcactcctgtaatcccaacactttgggaggccaaggcaggtgtatcacctgatgtcaggagttcgagaccagcctggccaacatggtgaaacccccgtctctactaaaaatacaaaaattagcc-ggcgtggtggtgggcacctgtaatctcagctactcgggaggctgaggcaggaggatcgcttgagcctgtgaggtggaggttgcggtgagccaagattgcgccgctggactccagtctgggcgacagagtgagaccctgtctc---------------------------------------------------------------------------------aaaa-ga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076503 296 + 50109623 ------------------------AAAAAAAAAATGgggcgcagtggctcactcctgtaatcccaacactttgggaggccaaggcaggtgtatcacctgatgtcaggagttcgagaccagcctggccaacatggtgaaacccccgtctctactaaaaatacaaaaattagcc-ggcgtggtggtgggcacctgtaatctcagctactcgggaggctgaggcaggaggatcgcttgagcctgcgaggtggaggttgcggtgagccaagattgcgccgctggactccagtctgggcgacagagtgagaccctgtctc---------------------------------------------------------------------------------aaaa-ga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048504 298 + 4464012 ----------------------AAAAAAAAAAAATGgggcacagtggctcactcctgtaatcccaacactttgggaggccaaggcaggtgtatcatctgatgtcaggagttcgagaccagcctggccaacatggtgaaacccccgtctctactaaaaatacaaaaattagcc-agcatggtggtgggcacctgtaatctcagctactcgggaggctgaggcaggaggattgcttgagcccgcaaggtggaggttgcggtgagccaagattgcgccactggactccagtctgggcgacagagtgagaccctgtctc---------------------------------------------------------------------------------aaaa-ga i gorGor5.CYUI01015375v1 C 0 C 0 s calJac3.chrUn_GL286373 1890403 330 - 2117846 CTTTTCACTGaaaaaaaaaaaaaaaaaaaaaaaaTGggacgcagtggctcacacctgtaatcccagcattttgggaagccaaggcaggtggatcacctgagctcaggagttccagtccagtgtggccaacatggtgaaa-cctcatctctactaaaaatacaaaaattagctgggcgtggtggcgggcacctgtaatcccacctacctgggaggctgaggcaggagaatcacttgagcctgggaggtggaggttacagtgagttgagactgcgccactgcactccagtctgggcgacagagtgagactctgtctcaaaaa-----------------------------------------------------------------------aaaaaaaaa-aa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8807604 315 - 16357246 CTTTTAACTG-----aaaaaaaaaaaaaaaaaaataggacgcagtggctcaaacctgtaatcccagcattgtgggaggccaaggtgggtggatcacctgagctcaggagttccagtccagtgtggccaacatggtgaaa-cgtcatctctactaaaaatacaaaaattagctgggcgtagtggcgtgcacctgtaatctcacctacttgggaggctgaggcaggagaatcacttgagcctgggaggtggaggttgcaatgagctgagactgcgccactgcactccagtctgggcgacagagtgagaccctgtctc---------------------------------------------------------------------------------aaaa-aa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1278801 392 - 1807191 CTTTTCACTG-----GAAAAAAAAAAAAAAA----Gggacgcagtggctcacacctgtaatcccagcattttgggaggccaaggcgggtggatcacctgagctcaggagttccagtccagtgtggccagcatggtgaaa-cctcatctctactaaaaatacaaaaattagctgggcgtggtggcgcgcacctgtaatcccacctactagggaggctgaggcaggagaatcacttgagcctgggaggtggagattgcagtgagctgagactgtgccactgcactccagtctggtcgacagagtgagaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa-aa i cebCap1.NW_016107750v1 C 0 C 0 e canFam3.chr10 46049430 192 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 8963546 0 + 96509753 I e rheMac8.chr10 84201181 2935 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I a score=313202.000000 s hg38.chr22_GL383582v2_alt 15248 152 + 162811 aaagaa----------aaaaaaGACCTCT-aaacaacccacaaactgggagaaaatttttgcaaatcacatgttccataagggacttgtatctaggatacataaaattct-tacaactcagtaatgaaaagacaaatagccaagtttagaaatgggcaagggag s panTro5.chr22 28771862 152 + 37823149 aaaaaa----------aaaaaaGACCTCT-aaacaacccacaaactgggagaaaatttttgcaaatcacatgttccataagggacttgtatctaggatacataaaattct-tacagctcagtaatgaaaagacaaatagccaagtttagaaatgggcaagggtg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076799 152 + 50109623 aaaaaa----------aaaaaaGACCTCT-aaacaacccacaaactgggagaaaatttttgcaaatcacatgttccataagggacttgtatctaggatacataaaattct-tacagctcagtaatgaaaagacaaatagccaagtttagaaatgggcaagggtg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048802 150 + 4464012 aa--aa----------aaaaaaGACCTCT-aaacaatccacgaactgggagaaaagttttgcaaatcacatgttccataagggacttgtatctaggatacataaaattct-tacaactcagtaatgaaaagacaaatagccaaatttagaaatgggcaagggtg i gorGor5.CYUI01015375v1 C 0 C 0 s calJac3.chrUn_GL286373 1890733 163 - 2117846 aaaaaaaggaaaTAGTAGAAAAGATCTCTaaaacaacccacaaactgggagaaaacttttgcaaatcacatgttccataagagacttgtatctaggagatataaaactct-tacaactcaataataaaaagacaaatagccaaattaaaaaatgggcaacggtg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8807919 163 - 16357246 aaagaaaggaaataatagaaaagaCCTCTaaaacaacccacaaactgggagaaaatttttgcaaatcacgtgttctgtaagagacttgtatctaggagatataaaactct-tacaactcaataataaaaagacaaatagccaaattaaaaaatgggcaagggtg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1279193 163 - 1807191 aaaaaaaGGAAATAGTAGAAAAGACTTCTaaaacaatccgcaaactgggagaaaatttttgcaaatcacatgttccataagagacttgtatctaggagatataaaactct-tacaactcaatagtgaaaagacaaatagccaaattaaaaaatgggcaagggtg i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46049622 154 - 69331447 GAAaaa----------gaaaatggccactaaaacaacccacaaactgggagaacatatttgcaaatcatatattccataaagtacttgtatctagaatatatagaagactctacaactcaataataagaagacaaacagccctatttaaaaacaagcaaaggag i canFam3.chr10 I 192 I 11675 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 8963546 0 + 96509753 I e rheMac8.chr10 84201181 2935 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I a score=394391.000000 s hg38.chr22_GL383582v2_alt 15400 219 + 162811 acaacaccaaatgctggtgaggatgtgaagcaacaggaactctccttactggtaggaacgcaaaatggtacagcagctttggaagacagtttggctttctgacaaaactaaacatactcccatcagaagatccagccattgcattccttagtgtttacccaaatgagctgaaaacttatgtccacacagaaacctgcacatggatgtttacagcagctt s panTro5.chr22 28772014 219 + 37823149 acagcaccaaatgctggtgaggatgtgaagcaacaggaactctccttactggtaggaatgcaaaatggtacagcagctttggaagacagtttggctttcttacaaaactaaacatactcccatcagaagatccagccattgcatttcttagtgtttacccaaatgagctgaaaacttatgtccacacagaaatctgcacatggatgtttacagcagctt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41076951 219 + 50109623 acagcaccaaatgctggtgaggatgtgaagcaacaggaactctccttactggtaggaatgcaaaatggtacagcagctttggaagacagtttggctttcttacaaaacgaaacatactcccatcagaagatccagccattgcattccttagtgtttacccaaatgagctgaaaacttatgtccacacagaaacctgcacatggatgtttacagcagctt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3048952 216 + 4464012 acaaca-caaatgctggtgaggatgtgaagcaacaggaactctccttactggtaggaatgcaaaatggtacagcagctttggaagacagtttggctttcttacaaaactaaacatactcctatcagaagatccagccattgcactccttagtgtttacccaaatgagctgaaaacttatgtccacccagaaacctgcacatgtatgtttacagcagc-- i gorGor5.CYUI01015375v1 C 0 C 0 s calJac3.chrUn_GL286373 1890896 219 - 2117846 acaacaccaaatgctggagaggatgtgaagcaacaggaactctttttactggtaggaatgcaaaatggtacagcaactttggaagacaatttggctttcttacagaactaaacatactcctatcataagatccagccattacaagccttagtgtttacccaaatgagctgaaaacttatgtccacacagaaacctgcacatggatgtttatagcagctt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8808082 219 - 16357246 acaacaccaaatgctcgtgaggatgtgaagcaacaggaattctttttgctggtaggaatgcaaaatggtacagcaactttggaagacaatttggctttcttacaaaactaaacatactcctatcataagatccagccattgcatggcttagtgtttacccaaatgagctgaaaacttatgtccacacagaaacctgcacatggatgtttatagcagctt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1279356 219 - 1807191 acaacaccaaatgctggtgaggaggtgaagcaacaggaactctttttactggtaggaatgcaaaatggtacagcaactttggaagacaatttggctttcttacaaaactaaacatacccctgtcataagatccagccattgcacgccttagtgtttacccaaatgagctgaaaacttatgtccacacagaaacctgcacatggatgtttacagcagctt i cebCap1.NW_016107750v1 C 0 I 21599 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 8963546 0 + 96509753 I e rheMac8.chr10 84201181 2935 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I a score=910.000000 s hg38.chr22_GL383582v2_alt 15619 1 + 162811 t s panTro5.chr22 28772233 1 + 37823149 t i panTro5.chr22 C 0 C 0 s panPan2.chr22 41077170 1 + 50109623 t i panPan2.chr22 C 0 C 0 s calJac3.chrUn_GL286373 1891115 1 - 2117846 t i calJac3.chrUn_GL286373 C 0 I 15260 s saiBol1.JH378157 8808301 1 - 16357246 t i saiBol1.JH378157 C 0 I 7812 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 8963546 0 + 96509753 I e rheMac8.chr10 84201181 2935 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I e gorGor5.CYUI01015375v1 3049168 0 + 4464012 C a score=531724.000000 s hg38.chr22_GL383582v2_alt 15620 968 + 162811 tgtttttgtttttgtttttgagatggagtctcgctctgtcacccagggtggagtgcagtggcgcgatctcggctcactggaagctctgcctcctgggttcacgccattctcctgcctcagcctccaagtagctgggactacaggcgcctgccacgaagcccagctaattttttgtattttaagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatctgcccgccttggcctcccaaagttctgggactacaggcgtgagccaccgctcccggccagcagcagctttatttgtaattgccaaaacttgaaagcaaccaagatgtcctttagcaggtaaatggataaataaaccttggtatatccagacaatggactatattcagcactagaaagaaatgagctattaagccatgaaaaggcatggagaaaccttaaatgcatattagtaagtgaaagaagacaatctgaaagagctacatactgtatgattccaactatattacatcctggaaaaggcaaaactatggagacaataaaaaagatggcaggggctgggagtggggagaaatgcacagaggtggtgcacagagaatatttagggtagtgaaattactctggatgttataatggtggatacatgttattacacatttgtcaaaccctacaggatgtacaacaccaagaatgaaacctaatgtaaactatgggatatgggtgatactggtgtgtcaatgtagcttcattgcttataacaaatatatcctctggtgcctgatgttgttggtggggggaggctatgagtgtgtgtggggtgggggaaccctgtattttctgttcagttttgctgtgaactcgaaactgctcttaaagatgaaatttttattttaatgggtaaagtatttgaataaccatttctccaaagaggatatacgggtgaccaata s panTro5.chr22 28772234 965 + 37823149 tgtttttgtttttgtttttgagatggagtctcactctgtcacccaggctggagtgcagtggcgcgatctcggctcactggaagctctgcctcctgggttcatgccattctcctgcctcagcctccaagtagctgggactacaggcgcctgccaccacgcccagctaattttttgtattttaagtagagacagggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccgcccgccttggcctcccaaagttctgggactacaggcgtgagccaccgcgcccggccagcagcagctttatttgtaattgccaaaacttgaaagcaaccaagatgtcctttagcaggtaaatggataaattaaccttggtatatccagacaatggactatattcagcactagaaagaaatgagctattaagccatgaaaaggcatggagaaaccttaaatgcatattagtaagtgaaagaa---aatctgaaagagctacatactgtatgattccaactatattacatcctggaaaaggcaaaactatggagacaataaaaaagatggcaggggctgggagtggggagaaatgcacagaggtggtgcacagagaatatttagggtagtgaaattactctggatgttataatggtggatacatgttattacacatttgtcaaaccctacaggatgtacaacaccaagaatgaaacctaatgtaaactatgggatatgggtgatactggtgtgtcaatgtagcttcattgcttataacaaatatatcctctggtgcctgatgttgttggtggggggaggctatgagtgtgtgtgaggtgggggaaccctgtattttctgttcagttttgctgtgaactctaaactgctcttaaagatgaaatttttattttaatgggcaaagtatttgaataaccatttctccaaagaggatatacaggtgaccaata i panTro5.chr22 C 0 C 0 s panPan2.chr22 41077171 964 + 50109623 tg-ttttgtttttgtttttgagatggagtctcactctgtcacccaggctggagtgcagtggcgcgatctcggctcactggaagctctgcctcctgggttcatgccattctcctgcctcagcctccaagtagctgggactacaggcgcctgccaccacgcccagctaattttttgtattttaagtagagacagggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccgcccgccttggcctcccaaagttctgggactacaggcgtgagccaccgcgcccggccagcagcagctttatttgtaattgccaaaacttgaaagcaaccaagatgtcctttagcaggtaaatggataaattaaccttggtatatctagacaatggactatattcagcactagaaagaaatgagctattaagccatgaaaaggcatggagaaaccttaaatgcatattagtaagtgaaagaa---aatctgaaagagctacatactgtatgattccaactatattacatcctggaaaaggcaaaactatggagacaataaaaaagatggcaggggctgggagtggggagaaatgcacagaggtggtgcacagagaatatttagggtagtgaaattactctggatgttataatggtggatacatgttattacacatttgtcaaaccctacaggatgtacaacaccaagaatgaaacctaatgtaaactatgggatatgggtgatactggtgtgtcaatgtagcttcattgcttataacaaatatatcctctggtgcctgatgttgttggtggggggaggctatgagtgtgtgtgaggtgggggaaccctgtattttctgttcagttttgctgtgaactctaaactgctcttaaagatgaaatttttattttaatgggcaaagtatttgaataaccatttctccaaagaggatatacaggtgaccaata i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3049168 964 + 4464012 ---ttttgtttttgtttttgagatagagtctcgctctgtcacccaggctggagtgcagtggtgcgatctcggctcactgcaagctctgcctcctgggttcacgccattctcctgcctcagcctccaagtagctgggactacaggcgcctgccaccacgcccagctaattttttgtattttaagtagagacagggtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatccgcctgccttggcctcccaaagttctgggactacaggcgtgagccaccgcacccggccagcagcagctttatttgtaattgccaaaacttgaaagcaaccaagatgtcctttagcaggtaaatggataaataaaccttggtatatccagacaatggactatattcagcactagaaagaaatgagctattaagccatgaaaaggcatggagaaaccttaaatgcatattagttagtgaaagaagacaatctgaaagagctacatactgtatgattccaactatattacatcctggaaaaggcaaaactatggagacaataaaaaagatggcaggggctgggagtggggagaaatgcacagaggtggtgcacagagaatatttagggtagtgaaattactctggatgttaaaatggtggatacatgttattacacatttgtcaaaccatacaggatgtacaacaccaagaatgaaacctaatgtaaactatgggatatgggtgatactggtgtgtcaatgtagcttcattgcttataacaaatatatcctctggtgcctgatgttgttggt-gggggaggctatgagtgtgtgtggggtgggggaaccctgtattttctgttcagttttgctgtgaactcgaaactgctcttaaagatgaaatttttattttaatgggcaaagtatttgaataaccatttctccaaagaggatatacaggtgaccaata i gorGor5.CYUI01015375v1 C 0 I 31 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 8963546 0 + 96509753 I e rheMac8.chr10 84201181 2935 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I a score=1965.000000 s hg38.chr22_GL383582v2_alt 16588 7 + 162811 agtacat s panTro5.chr22 28773199 7 + 37823149 agtacat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41078135 7 + 50109623 agtacat i panPan2.chr22 C 0 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 8963546 0 + 96509753 I e rheMac8.chr10 84201181 2935 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I e gorGor5.CYUI01015375v1 3050132 31 + 4464012 I a score=1088974.000000 s hg38.chr22_GL383582v2_alt 16595 1997 + 162811 gaaaagacattcaacatcatgagccattagggaaataaaaatcaaaaccctcgtgagataccatttctcacccagtagaatggctagagtgaaaaaggcagacacagccagtcacggtggctcacacctgtaatcccagcattttgagaggccaaggccagtagatcacttgggttcaggagtttgagaccagcctggccaacgtggtaaaacctcctctctactaaaaataggaaaattagctgggcatggtagtgcatgcctgtaatcccagctactagggaggctgaggcaggagaattgcttgacccgggaggtggaggttgcagtgagcccagatcatgccatttcactccagcttgggtgacagagcaagactccatctcaaaaaaaaaaaaaaaaagacaaaagatagtgttggcaaggatatagagaaattagaactttctatactttgctggtgggaatgtaaaatggtgtagccatttgggaaaacagtctggcagtttcttaaacagttaaatatggccaggagtggtggtactcacttgtaagaggccgaggcagaagcattgcttgagcttaggagtttgagaccagactaggcaaaataatgagaccgtattt-aaaaaaaaaaaaaaaagttaaacgtggACttactatatgatccagcaattccaatcctaggtatttaccctgaagaaatttttttccacacaaagacttgtatgcaaatgttcatagcagcattattcaccatagccaaaaactaaaaacacccaaatggctatctgttgataagtggataaacagaaggtggtctgtcACccaggcatggtggctcattcctataatgtcaggattgcttgaggccaggagtttgagaacagcttgggcaacatagtgagactgcatctgttgagggaagtcaggaaccccgaacggagggaccggctgaagccgtggcagaagaacataaattgtgaagatttcacggacatttgttagttccccaaattaatacttttataatttcttacacctgtctttactgcagtctctgaacataaattgtgaagatttcatggacacttatcacttccccaatcaatagccttgtgatttcctattcctgtctttaatctcttaatcccgtcatcttcgtaagctgaggaggatgtatgtcgcctcaggaccctgtgatgattgcattaactgcacaaattgtttgtagagcatgtgtgtttgaataatatgaaatctgggcaccttgaaaaaagaacaggataacagcaac----gttcagggaacaagagagataaccttaaactcttgactgccagtgagccgggcggaacagagccatatttctcttctttcaaaagcaaatgggagaaatatcgctgaattctttttctcagcaaggaacgcccctgagaaagagaatgcgtccctgagggtaggcctctgaaatggccacttggggggtggctgtattttacagtcacagctgtagggatgaaataagccccagtctcctgtagcgctcccaggcttattaggatgaggaaattcccacctaataaattttggtcagaccggttgtctgctctcaaaccctgtctcctgataagatgttatcagtgacaatgcatgcccaaaacttcattagcaattttaatttcgccccggtcctgtggtcctgtgaactcgccctgccttcatttaccttgtgatatcttattaccttgtgaagcatgtgatctctgtgacccacaccctattcgtacactctcttcccttttgaaatcgataataaaaacttgctggttttatggctcagggggcatcacggaacctgctgacatgtgacgtctcccccggacacccagctttaaaatttatctcttttgtactctgtccctttatttctcagaccggccgacacttagggaaaatagaaaagaacctacgtgaaatatcagggGTGAATTTTGCCC s panTro5.chr22 28773206 1994 + 37823149 gaaaagacattcaacatcatgagccattagggaaatacaaatcaaagccctcgtgagataccatttctcacccagtagaatggctagagtgaaaaaggcagacacagccagtcatggtggctcacacctgtaatcccagcattttgagaggccaaggccagtagatcacttgggttcaggagtttgagaccagcctggccaacatggtgaaacctcctctctactaaaaataggaaaattagctgggcatggtagtgcatgcctgtaatcccagctactagggaggctgaggcaggagaattgcttgacccgggaggtggaggttgcagtgagcccagatcacgccatttcaatccagcttgggtgacagagcaagactccatctc-aaaaaaaaaaaaaaaagacaaaagatagtgttggcaaggatatagagaaattagaactttc-atactttgctggtgggaatgtaaaatgatgtagccatttgggaaaacagtctggcagtttcttaaacagttaaatatGgccaggagtggtggtactcacttgtaagaggccgaggcagaagcattgcttgagcttaggagtttgagaccagactaggcaaaataatgagaccgtattt-aaaaaaaaaaaaaaaagttaaacgtagacttactatatgatccagcaattccaatcctaggtatttaccctgaagaaatttttttccacacaaagacttgtatgcaaatgttcatagcagcattattcaccatagccaaaaactaaaaacacccaaatggctatctgttgataagtggataaacagaaggtggtctgtcACccaggcatggtggctcattcctataatgtcaggattgcttgaggccaggagttcgagaacagcttgggcaatatagtgagactgcatctgttgagggaagtcaggaaccccgaacggagggaccggctgaagccgtggcagaagaacataaattgtgaagatttcacggacatttgttagttccccaaattaatacttttataatttcttacacctgtctttactgcagtctctgaacataaattgtgaagatttcatggacacttatcacttccctaatcaatagccttgtgatttcctattcctgtctttaatctcttaatcccgtcatcttcgtaagctgaggaggatgtatgtcgcctcaggaccctgtgatgattgcattaactgcacaaattgtttgtagagcatgtgtgtttgaataatatgaaatctgggcaccttgaaaaaagaacaggataacagcaac----attcagggaacaagagagataaccttaaactc-tgactgccagtgagccgggcggaacagagccatatttctcttctttcaaaagcaaatgggagaaatatcgctgaattctttttctcagcaaggaacgcccctgagaaagagaatgcatccctgagggtaggcctctgaaatggccactttgggggtggctgtattttacagtcacagctgtaggaatgaaataagccccagtctcctgtagcgctcccaggcttattaggacgaggaaattcccacctaataaattttggtcagaccggttgtctgctctcaaaccctgtctcctgataagatgttatcagtgacaatgcattcccgaaacttcattagcaattttaatttcgccccggtcctgtggtcctgtgaactcgccctgccttcatttaccttgtgatatcttattaccttgtgaagcatgtgatctctgtgacccacaccctattcgtacactctcttcccttttgaaatcactaataaaaacttgctggttttatggctcagggggcatcatggaacctgctgacatgtgatgtctcccccggacacccagctttaaaatttatctcttttgtactctgtccctttatttctcagactggctgacacttagggaaaatagaaaagaacctacgtgaaatatcagggGTGAATTTTGCCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41078142 1986 + 50109623 gaaaagacattcaacatcatgagccattagggaaatacaaatcaaagccctcgtgagataccatttctcacctagtagaatggctagagtgaaaaaggcagacacagccagtcacggtggctcacacctgtaatcccagcattttgagaggccaaggccagtagatcacttgggttcaggagtttgagaccagcctggccaacatggtgaaacctcctctctactaaaaataggaaaattagctgggcatggtagtgcatgcctgtaatcccagctactagggaggctgaggcaggagaattgcttgacccgggaggtggaggttgcagtgagcccagatcacgccatttcaatccagcttgggtgacagagcaagactccatctc----aaaaaaaaaaaaagacaaaagatagtgttggcaaggatatagagaaattagaactttc-atactttgctagtgggaatgtaaaatgatgtagccatttgggaaaacagtctggcagtttcttaaacagttaaatatGgccaggagtggtggtactcacttgtaagaggccgaggcagaagcattgcttgagcttaggagtttgagaccagactaggcaaaataatgagaccgtattt------aaaaaaaaaaagttaaacgtagACttactatatgatccagcaattccaatcctaggtatttaccctgaagaaatttttttccacacaaagacttgtatgcaaatgttcatagcagcattattcaccatagccaaaaactaaaaacacccaaatggctatctgttgataagtggataaacagaaggtggtctgtcACccaggcatggtggctcattcctataatgtcaggattgcttgaggccaggagttcgagaacagcttgggcaatatagtgagactgcatctgttgagggaagtcaggaaccccgaacggagggaccggctgaagccgtggcagaagaacataaattgtgaagatttcacggacatttgttagttccccaaattaatacttttataatttcttacacctgtctttactgcagtctctgaacataaattgtgaagatttcatggacacttatcacttccctaatcaatagccttgtgatttcctattcctgtctttaatctcttaatcccgtcatcttcgtaagctgaggaggatgtatgtcgcctcaggaccctgtgatgattgcattaactgcacaaattgtttgtagagcatgtgtgtttgaataatatgaaatctgggcaccttgaaaaaagaacaggataacagcaac----attcagggaacaagagagataaccttaaactc-tgactgccagtgagccgggcggaacagagccatatttctcttctttcaaaagcaaatgggagaaatatcgctgaattctttttctcagcaaggaacgcccctgagaaagagaatgcatccctgagggtaggcctctgaaatggccactttgggggtggctgtattttacagtcacagctgtaggaatgaaataagccccagtctcctgtagcgctcccaggcttattaggacgaggaaattcccacctaataaattttggtcagaccggttgtctgctctcaagccctgtctcctgataagatgttatcagtgacaatgcattcccgaaacttcattagcaattttaatttcgccccggtcctgtggtcctgtgaactcgccctgccttcatttaccttgtgatatcttattaccttgtgaagcatgtgatctctgtgacccacaccctattcgtacactctcttcccttttgaaatcgctaataaaaacttgctggttttatggctcagggggcatcatggaacctgctgacatgtgatgtctcccccggacacccagctttaaaatttatctcttttgtactctgtccctttatttctcagactggctgacacttagggaaaatagaaaagaacctacgtgaaatatcagggGTGAATTTTGCCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3050163 1991 + 4464012 gaaaagacattcaacatcatgagccattagggaaatacaaatcaaagccctcgtgatataccatttctcacccagtagaatggctagagtgaaaaagacagacacagccagtcacggtggctcacacctgtaatcccagcattttgagaggccaaggccagtagatcacttgggttcaggagtttgagaccagcctggccaacatggtgaaacctcctctctactaaaaataggaaaattagctgggcatggtagtgcatgcctgtaatcccagctactagggaggctgaggc---agaattgcttgacccgggaggtggaggttgcagtgagcccagatcacgccatttcactccagcttgggtgacagagcaagactccatctc--aaaaaaaaaaaaaaagacaaaagatagtgttggcaaggatatagagaaattagaactttc-atactttgctggtgggaatgtaaaatggtgtagccatttgggaaaacagtctggcagtttcttaaacagttaaatatggccaggagtggtggtactcacttgtaagaggccaaggcagaagcattgcttgagcttaggagtttgagaccagactaggcaaaataatgagaccgtatttaaaaaaaaaaaaaaaaagttaaacgtagacttagtatatgatccagcaattccaatcctaggtatttaccccgaagaaatttttttccacacaaagacttgtatgcaaatgttcatagcagcattattcaccatagccaaaaactaataacacccaaatggctatcagttgataagtggataaacagaaggcggtctgtcACccaggcatggtggctcattcctataatctcaggattgcttgaggccaggagtttgggaacagcttgggcaacatagtgagactgcatctgttgagggaagtcaggaaccccgaacggagggaccggctgaagccatggcagaagaacataaattgtgaagatttcacagacatttattagttccccaaattaatacttttataatttcttacacctgtctttactgcagtctctgaacataaattgtgaagatttcatggacacttatcacttccctaatcaatagccttgtgatttcctattcctgtctttaatctcttaatcccgtcatcttcgtaaactgaggaggatgtatgtcacctcaggaccctgtgatgattgcattaactgcacaaattgtttgtagagcatgtgtgtttgaacaatatgaaatctgggcaccttgaaaaaagaaaaggataacagcatctcttgttcagggaacaagagagataaccttaaactc-----tgctggtgagctgggcggaacagagccatatttctcttctttcaaaagcaaatgggagaaatatcgctgaattctttttctcagcaaggaacacccctgagaaagagaatgtatccctgagggtaggcctctgaaatggccactttgggggtggctgtattttacagtcacagctgtagggatgaaataaaccctagtctcctgtagcgctcccaggcttattaggacaaggaaattcccacctaataaattttggttagaccggttctctgctctcaaaccctgtctcctgataagatgttatcagtgacaatgcatgcccaaaacttcattagcaattttaatttcaccctggtcctgtggtcctgtgaactcgccgtgccttcatttaccttgtgatatcttattaccttgtgaagcatgtgatctctgtgacccacaccctattcgtacactctgtctccttttgaaatcgctaataaaaacttgctggttttatggcttagggggcatcacggaacctgctgacatgtgatgtctcccccggacacccagctttaaaatttatctcttttgtactctgtccctttatttctcagaccagccgacacttagggaaaatagaaaagaacctacgtgaaatatcaggggtgaattttgccc i gorGor5.CYUI01015375v1 I 31 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 8963546 0 + 96509753 I e rheMac8.chr10 84201181 2935 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I a score=1591.000000 s hg38.chr22_GL383582v2_alt 18592 4 + 162811 GATA s panTro5.chr22 28775200 4 + 37823149 AATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41080128 4 + 50109623 AATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3052154 4 + 4464012 gata i gorGor5.CYUI01015375v1 C 0 C 0 s macFas5.chr10 87549257 4 - 96509753 gact i macFas5.chr10 I 3048 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24632171 2665 + 33263144 I e cerAty1.NW_011999588v1 4005771 2347 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e rheMac8.chr10 84201181 2935 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I a score=1667540.000000 s hg38.chr22_GL383582v2_alt 18596 704 + 162811 Gcatctctacaaaaatttgtttaaaatagccaagcatggtggtacgtgtctatagtcccagctactcgaggggctgaggtaggaggattgcttgaagccaggagttcgaggctaccataaactatgatcctaccactgtactccagcctgggtgac-aaaAAAACAAACCTAAACAAAACACAAAAT-ATGGtgatacggtttggatatttgtcccttccaaatctc--gtcaaaatgtcatccccagtgttggagttgaagcctggtggaaggtgaatggatcatggaggcagatccctcatgaacggcttagcaccatccccttggtgatgagtgagttcatctgtaatctggttg-ttaaaggtgtgtggcatctcccgctttgctctcttgttcctgctgtcaccatgtgacatccctgctctcccttttccttctgctgggatttgaagcttcctgaggccctcaccaggagcagatgctggagccatgcttgcacagcctgcagaa--ctgaatcaattaaacctcttttTCCT-CTCTCTCtttttttatttttattttttttg-atatggagtctcactctgtcacccaggctggagtgcgatggcacgatctcagctcactgtaacctccgcctcccgggttcaagcgattctcctgcctcagccttccaagtagctgggattataggcgtacgccaccatgcc s panTro5.chr22 28775204 704 + 37823149 Gcatctctacaaaaatttgtttaaaatagccaagcatggtggtacgtgtctatagtcccagctactcggggggctgaggtaggaggattgcttgaagccaggagttcgaggctaccataaactatgatcctaccactgtactccagcctgggtgac-aaaAAAACAAACCTAAACAAAACACAAAAT-ATGGtgatatggtttggatatttgtcccttccaaatctc--gtcaaaatgtcatccccagtgttggagttgaagcctggtggaaggtgaatggatcatggaggcagatccctcatgaacggcttagcaccatccccttggtgatgagtgagttcatctgtaatctggttg-ttaaaggtgtgtggcatctcccgctttgctctcttgttcctgctgtcaccatgtgacatccctgctctcccttttccttctgctgggatttgaagcttcctgaggccctcaccaggagcagatgctggagccatgcttgcacagcctgcagaa--ctgagtcaattaaacctcttttttct-CTCTCTCtttttttatttttattttttttg-agatagagtctcactctgtcacccaggctggagtgcgatggcacgatctcagctcactgtaacctctgcctcccgggttcaagcgattctcctgcctcagccttccaagtagctgggattataggcgtacaccaccatgcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41080132 704 + 50109623 Gcatctctacaaaaatttgtttaaaatagccaagcatggtggtacgtgtctatagtcccagctactcggggggctgaggtaggaggattgcttgaagccaggagttcgaggctaccataaactatgatcctaccactgtactccagcctgggtgac-aaaAAAACAAACCTAAACAAAACACAAAAT-ATGGtgatatggtttggatatttgtcccttccaaatctc--gtcaaaatgtcatccccagtgttggagttgaagcctggtggaaggtgaatggatcatggaggcagatccctcatgaacggcttagcaccatccccttggtgatgagtgagttcatctgtaatctggttg-ttaaaggtgtgtggcatctcccgctttgctctcttgttcctgctgtcaccatgtgacatccctgctctcccttttccttctgctgggatttgaagcttcctgaggccctcaccaggagcagatgctggagccatgcttgcacagcctgcagaa--ctgagtcaattaaacctcttttttct-CTCTCTC-ttttttatttttattttttttgtagatagagtctcactctgtcacccaggctggagtgcgatggcacgatctcagctcactgtaacctccgcctcctgggttcaagcgattctcctgcctcagccttccaagtatctgggattataggcgtacaccaccatgcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3052158 704 + 4464012 acatttctacaaaaatttgtttaaaatagccaagcatggtggtacgtgtctatagtcccagctactcg-ggagctgaggtaggaggattgcttgaacccaggagttcgaggctaccataaactatgatcctaccactgtactccagcctgggtgacaaaAAAAACAAACCTAAACAAAACACAAAAT-ATGGtgatgtggtttggatatttgtcccttccaaatctcatgtcaaaatgtcatccccagtgttggagttgaagcctggtggaaggtgaatggatcatggaggcagatccctcatgaacagcttagcaccatccccttggtgatgagtgagttcatctgtaatctggttg-ttaaaggtgtgtggcatct-ccactttgctctcttgttcctgctgtcaccatgtgacatccctgctctcccttttccttctgctgggatttgaagcttcctgaggccctcaccaggagcagatgctggagccatgcttgcacagcctgcagaa--ctgagtcaattaaacctctttttttt-ctctctt-ttttttatttttattttttttg-agatggagtctctctctgtcacccaggctggagtgcgatggcacgatctcagctcactgtaacctccgcctcccgggttcaagcgattctcctgcctcagccttccgagtagctgggattataggcgtacgccaccatgcc i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84204116 706 + 92844088 gcatctctacaaaaattagtttaaaatagctgagcatggtggtacgtgtctgtagtcccagctactcaggaggctgaggtaggaggatttcttgaacccaggagttcgagcttaccataagctatgatcctaccactgtgctccagcctgggtgac-aaaAAAACAAACCTAAACAAAACCCAAAATAATGGtaatatggtttggatgtttgtcccctccaaatctcatgttgaaatgtcatccccagtgttggagttgaagcctggtgggaggtgaatggatcatggaggcagatctctcatgaacagcttcgcaccatccccttggtgatgagtgagttcatctgcaatctggttgtttaaaggtgtatggcatctcccgctttgctctcttgctcctgctgtcaccatgtgacatccctgctttcccttttccttctgctgtgattagaagcttcctgaggccctcaccaggagcagatgctggagccatgcttgcacagcctgcagaactctaagtcaattaaacctcttttttttcctctctc-tct----tttttttcttttttg-aggtggagtcttgctctgttgcccaggctggagggtgatggcacgatctcagctcactgtaacctctgcctcctgagttcaagtgattctcctgcttcagccttccgagtaggtgggattataggcgcacgccaccacgcc i rheMac8.chr10 I 2935 I 16499 s macFas5.chr10 87549261 706 - 96509753 gcatctctacaaaaattagtttaaaatagctgagcatggtggtacgtgtctgtagtcccagctactcaggaggctgaggtaggaggatttcttgaacccaggagttcgagcttaccataagctatgatcctaccactgtactccagcctgggtgac-aaaAAAACAAACCTAAACAAAACCCAAAATAATGGtaatatggtttggatgtttgtcccctccaaatctcatgttgaaatgtcatccccagtgttggagttgaagcctggtgggaggtgaatggatcatggaggcagatctctcatgaacagcttcgcaccatccccttggtgatgagtgagttcatctgcaatctggttgtttaaaggtgtatggcatctcccgctttgctctcttgctcctgctgtcaccatgtgacatccctgctttcccttttccttctgctgtgattagaagcttcctgaggccctcaccaggagcagatgctggagccatgcttgtacagcctgcagaactctaagtcaattaaacctcttttttttcctctctc-tct----tttttttcttttttg-aggtggagtcttgctcagttgcccaggctggagggtgatggtacgatctcagctcactgtaacctctgcctcctgagttcaagtgattctcctgcttcagccttccgagtaggtgggattataggcgcacgccaccacgcc i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4008118 704 - 4483953 gcatctctacaaaaattagtttaaaatagctgagcatggtggtacgtgtctgtagtcccagctactcaggaggctgaggt---aggattgcttgaaccctggagttcgagcttaccataagctatgatcctaccactgtactccagcctgggtgac-aaaAAAACAAACCTAAACAAAACCCAAAATAATGGtgatatggtttggatgtttgtcccctccaaatctcatgttgaaatgtcattcccagtgttggagttgaagcctggtgggaggtgaatggatcatggaggcagatctctcatgaacagcttcgcaccatccccttggtgatgagtgagttcatctgcaatctggttgtttaaaggtgtatggcatctcccgctttgctctcttgctcctgctgtcaccatgtgacatccctgctctcccttttccttctgctgtgattggaagcttcctgaggccctcaccaggagcagatgctggagccttgcttgcacagcctgcagaactctaagtcaattaaatctcttttttttcctctctc-tctc---ttttttttttttttg-aggtggagtcttgctctgttgcccaggctggagggtgatggcacgatctcagctcactgtaacctctgcctcctgggttcaagtggttctcctgcttcagccttccgagtaggtgggattatagatgcacgccaccatgcc i cerAty1.NW_011999588v1 I 2347 I 16022 s chlSab2.chr19 24634836 710 + 33263144 gcatctctacaaaaattagtttaaaatagctgagcatggtggtacgtgtctgtagtcccagctactcaggaggctgaggtaggaggattgcttgaacccaggagttcgagcttaccataagctatgatcctaccaccgtactccagcctgggtgac-aaaAAAACAAACCTAAACAAAACCCAAAATAATGGtgatatggtttggatgtttgtcccctccaaatctcatgttgaaatgtcatccccagtgttggagttgaagcctggtgggaggtgaatggatcatggaggcagatctctcatgaacagcttcgcaccatccccttggtgatgagtgagttcatctgcaatctggttgtttaaaggtgtatggcatctcccgctttgctctcttgctcctgctgtcaccatgtgacatccctgctctcccttttccttctgctgtgattggaagcttcctgaggccctcaccaggagcagatgctggagccatgcttgcacagcctgcagaactctaagtcaattaaacctcttttttttcctctctc-tctctttttttttttttttttg-agatggagtcttgctctgttgcccaggctggagggtgatggcacgatctcagctcactgtaacctctgcctcctgggttcaagtgattctcctgcttcagccttccgagtaggtgggattataggcgcatgccaccatgcc i chlSab2.chr19 I 2665 I 19787 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e nomLeu3.chr7b 106578131 8734 - 115148730 I a score=1898.000000 s hg38.chr22_GL383582v2_alt 19300 3 + 162811 cag s panTro5.chr22 28775908 3 + 37823149 cag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41080836 3 + 50109623 cag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3052862 3 + 4464012 cag i gorGor5.CYUI01015375v1 C 0 C 0 s macFas5.chr10 87549967 3 - 96509753 tgg i macFas5.chr10 C 0 I 16531 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24635546 19787 + 33263144 I e cerAty1.NW_011999588v1 4008822 16022 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e rheMac8.chr10 84204822 16499 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I a score=2708591.000000 s hg38.chr22_GL383582v2_alt 19303 5042 + 162811 gaggcagaggttgcagtgagccgagatcacaccactgcactccagcctgggtgacagagcaagactccgtctcagg--gaaaaaaaaaaaaaactaccaaattgttttccagaataactgaatcattttacattctcattggcaattcatgagtgatctagtttctccacatcctcttctacatttggtgtagcaactgtttacatttagccatttggaataagtgtacagggatagcccattgtagttttagtttgcatttccttaatggctagtgatattgaacatcctttcccaagtttatttccaatgtgtatattctctttactgaagtgctttttcatgtcttttgcacatttttatttagattatttatttttgagttttgggagttctttatatattctagatactagtcctttatcagatacgtagtttgcaaatattttctcccactctatgccttttcatcctctgaacagggtctttcacagagtaaaagtgcttaattttgatgaaatctattttattatttttcctgttatggattgtgcttttagtgtcaagactaaaaatgccttgtgtagctctaggtccagaagattttctcctaaatgtttgatgatgtacatttaagtccatggtttggtttggtttttgttttttggtttttgtttttctttgagacagtcttattccctcacccaggctggagtgcagtggcatgatcttggcttactgcaacctctgcctcccaggttcaagcgattctggtgtctcatcctccaaagtagctggaattatagatgcgcaccatcacgcccagctaatttttgtatttttagtagagacagggtttcaccacgttggccaggctggtcttgaactcctgacttcaagtgatctacctgccatgctggaattataggcatgagccactgcaccttgttgtaatttttgtatataatgtaagatttatttcaaggttcattttcttgcctatgaatatctgattactccagaaccatttgttgaaaagccatttttcctccattgaattgcatcagcacctttgtaaaaaaccaactgggcacatATTAgttggtgacaaattcttttagttttccttcctttgagaattttacaatttcccccagcattcttgaaggatattttcattggatatgggattctgagttgatagtttttttaacaatggaaaagtgttgtgtcacttctttctggtttctgttgtctctgatgagaaataagctgtcattcaaattattttttctatataagtaacatattgtttttctctggctgctttcaaaaaatttttttgttttgttttcagaagtttgactataatgtatcttggtgtgaacttctttgggtttatcccaattggaattctctcagcttcttgaatctattgttttatgcattttgccaagtaggaaagttttctttgaatatttgttcatttgattatttatttattaatgtatttttttgagacagggtcttgctctgttatccaggctgga-gtacagtggcagaatcatggctcactgcaacctagaccttccaggccgaagcgttcctcccacttcagtccccagagtagctgggaccacaggtgtg---caccaccacactcaatttttttgtttttgaggcggagtctcgctctttcaccaggctgg-agtgcagtggcatgatcttggctcactgcaatgtctgcctcccagattccagtgattctcgtgcctcaacctcctgagtagctgggattacaggtgcctgccaccatgcctggctaatttttgaatttttggtagagacggggttttaccaagttggccaggatggtctcaatctcttgacctcatgatccgcctgccttggcctcccaaagtgctgggattacaggcgagagccaccacgcccggccccctcctatgttgtccaggctggccccaaactcctgggctcaagcaatccttctgcctctgtctaccaaaatgctgggattacagggatgagctatcatgccccactctgatcttttattaacagtctcacaggccctgaggttgtgtttattatttgtttcttttctt--ttcttctttttttttttttttttttttttttttttggttgagatggagtctcgctctgtcgcccaggctggagtacagtggcgcgatcttg-----------gctctgcctcccgggttcacaccattctcccgcctcagcctcccgagtagctgggactacaggtgcccaccaccatgctcggctaatttcgtttttgtatttttagcagagacggggtttcaccgtgttagccagggatggtctcgatctcctgacctcatgatccacccacctcagcctcccaaagtgctggggttacaggcatgagccactgtaccggcctcttttattttctcttttctttcttgtttactttttccagtccattttctctctgttgttcagattgagtaatttctgttgtcctgtcttccagttaactgcttgtgttgtcctcttttccacttttgagcccattcactgagctttttatttcgttgttgtattttctatttctaaaatttctatctgattcttccttatatctcctatttctatgctgagactcttttttattttttcaacatgttcataactgta----ttttttttttttgagatggagtctcactctgtcgcccaggctgaagtgcagtggcacgatctcggtgcactgcaacctctgcctcccaggttcaaaagattctcctgcctcaggctcccgggtagctggaattacaggcatgcaccaccacacccagctaatttttgtactttttgtagagacagggtttaaccacgttgcccaggcttgtctcgaactcctggactcaagcaaccaacctgacttggcctctcaaagtgctgggattacaggcatgagccactttgcccggcctgagttgcattcctctatgaattttagaaaaagcaatcaatttcaacaagaaaattgctggaatttttattgattacactgaatctatagattaatttgagaggaactgacatctttaaaatgttgagtcttctgattcatgaccatggtatggctcttcattgatttacatcgtctttaatttctctcagcaatgttttgtagttattagtgtatgattttgcatgtagcttttgttatattttttgtctatgtattttatattttggatgctgttataactggtttttaagaagttttaattcccaattgtttattcctattatatagcaatataattgattttaatacagtgatcttgcatccttcagccttgttaagctgtagttgctttttggatgatcccacaggattttacacacaatcatgttatttgaaaatacagttttatttctttctttccaatctgattgccttttacttctcttttttgacttgttcactggctagagcttctagcacaatatcatacagaagtgatgagggtagaccgggtgcggtggctcatgcatgtaatcccagcactttgggaggccgaggcaggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaatttagcttggcgtgatggtgcacacctataattccagctacttgggaggctgaggcaggagaatcgcttgaacctgagaggcagaggttgcagtgagctgagatcatgccattgcact--------------------ccagcctaggtgacagaacgagactctgcctc---aaaaaaaaaagcaatgagggcagactttttttgccttaaattaagacattcctggccagctgtggtggctcatgtctgtaatgccaatactttgggaggccaaggtgggtggatcacctgagatcaggaatttgagaccagcctggccaacatggtgaaaccccgtttctactagaaatacaaaaattagctgggcgtggcggcaggcacctgtaatcctagctattcaggtggctgaggtaggagaatcacttaaacctgggaggcggaggttgcagtgagccaagattgtgcccttacactacagcctgggtgacaagagtgaaagtctgtctcaaaataaataaataaataaataaataaataaataaagacatttctgaacttaggaacaaagcatttagtattttaccattgagtatgttgctagctgtaggtttttcgtagatacccctcatcggattgaaaatgtttccatgaattcctcgtttgctgggaattttcttttctttgaggttcagatgttgattttgtgaaatatattttatgcatctattgatataatcatggaatttttctttttctgtctgttaatatggttaatttcatttattggtttttgaatgttgaaccaaccttgcattcctgggagtaaatgctatagataatgttgtatatatttacatattattttcaatgtgataagattttgttaatatttgcatctgtgtttatgaggatgttaatctgtaTCATCTTTACCTGttttttttttgttg---tttgtttgtttttgagatggagtcttggtctgttgcccaggctagagtgcagtggcgtgatcttggctcactgcaacctctgcctcctgggttcaagtgatttccctgcctgagcctcccgagtagctggcagtacaggtgcttgccaccatgcccagctaaattttgtatttttagtagagatggggtttcatcgtgttggtcaggctggactcgaactcctgaactcaagtgatccgcctgcctcagcctcccaaagtgctgggattacaggtgtgagccactgtgcctggccCATTAaggtgcatatgtatttaggattgtgatattttcctgttggactga------ttttttttttttttttgagacagagtctcgctctgtctgcccagcctggagtgcagtggcgtgatctcagctctcatctcactgcaagctccgcctcctgga s panTro5.chr22 28775911 5045 + 37823149 gaggcagaggttgcagtgagccgagatcacaccactgcactccagcctgggtgacagagcaagactccgtctcaggaaaaaaaaaaaaaaaaactaccaaattgttttccagaataactgtatcattttacattctcattggcaattcatgagtgatctagtttctccacatcctcttctacatttgatgtagcaactgtttacatttagccatttgg-ataagtgtacagggatagcccattgtagttttagtttgcatttccttaatggctagtgatattgaacatcctttcccaagtttatttccaatctgtatattctctttactgaagtgctttttcatgtcttttgcacatttttatttagattatttatttttgagttttgggagttctttatatattctagatactagtcctttatcagatacgtagtttgcaaatattttctcccactctatgccttttcatcctctgaacagggtcttt--cagagtaaaagtgcttaattttgatgaaatctattttattttttttcctgttatggattgtgcttttagtgtcaagactaaaaatgctttgtgtagctctaggtccagaagattttctcctaaatgtttgatgatgtacatttaagtccatggtttggtttggtttttgttttttggtttttgtttttctttgagacagtcttactccctcacccaggctggagtgcagtggcatgatcttggcttactgcaacctctgcctcccaggttcaagcaattctggtgtctcatcctccaaagtagctggaattataggtgcgcaccatcatgcccagctaatttttgtatttttagtagagacagggtttcaccactttggccaggctggtcttgaactcctgacttcaagtgatctacctgccatgctggaattataggcatgagccactgcaccttgttgtaatttttgtatataatgtaagatttagttcaaggttcattttcttgcctatgaatatctgattactccagaaccatttgttgaaaagccatttttcctccattgaattgcatcagcacctttgtaaaaaaccaactggg--catattagttggtcacaaattcttttagttttccttcctttgagaattttacaatttcccccagcattcttgaaggatattttcattggatatgggattctgagttgatagtttttttaacaatggaaaagtgttgtgtcacttctttctggtttctgttgtctctgatgagaaataagctgtcattcaaattattttttctatataagtaacatattgtttttctctggctgctttcaaaaaatttttttgttttgttttcagaagtttgactataatgtgtcttggtgtgaacttctttgggtttatcccaattggaattctctcagcttcttgaatctattgttttctgcattttgccaagtaggaaagttttctttgaatatttgttcatttgattatttatttattaatgtatttttttgagacagggtcttgctctgttatcaaggctgga-gtacagtggcagaatcatggctcactgcaacctagaccttccaggctcaagcgttcctcccacttcagtccccagagtagctgggaccacaggtgtg---caccaccacactcaatttttttgtttttgaggcggagtctcgctctttcaccaggctggaagtgcagtggcatgatcttggctcactgcaatgtctgcctcccagattccagtgattctcgtgcctcaacctcctgaatagctgggattacaggtgcctgccaccacgcctggctaatttttgaatttttggtagagatggggttttaccaagttggccaggacggtctcaatctcttgacctcatgatccgcctgccttggcctcccaaagtgctgggattacaggcgagagccaccacgcccggccccctcctatgttgtccaggctggccccaaactcctgggctcaagcaatccttctgcctttgtctaccaaaatgctgggattacagggatgagctatcatgccccactctgatcttttattaacagtctcacaggccctgaggttgtgtttattatttgtttcttttctt--ttcttc----------------ttcttttttttttggttgagatggagtctcgctctattgcccaggctggagtacagtggcgcgatcttggctcactgcaagctctgcctcctgggttcacaccattctcccgcctcagcctcccgagtagctgggactacaggtgcccaccaccatgctcggctaatttcatttttgtatttttagcagagacggggtttcaccatgttagccagggatggtctcgatctcctgacctcatgatccacccacctcagcctcccaaagcgctggggttacaggcatgagccactgtgccggcctcttttattttctcttttctttcttgtttacttttcccagtccattttctctgtgttgttcagattgagtaatttctgttgtcctgtcttccagttaactgcttgtgttgtcctcttttccacttttgagcccattcactgagctttttattttgttgttgtattttctatttctaaaatttctatctgattcttccttatatctcctatttctatgctgagactcttttttattttttCAACATGTTCATAACTGTAttttttttttttttttgagatggagtctcactctgtcacccaggctgaagtgcagtggcatgatctcggtgcactgcaacctctgcctcccaggttcaaaagattctcctgcctcaggcttccgggtagctggaattacaggcatgcaccaccacacccagctaatttttgtactttttgtagagacagggtttaaccacgttgcccaggcttgtctcaaactcctggactcaagcaaccaacctgacttggcctctcaaagtgctgggattacaggcatgagccactgtgcccggccTGAGttgcattcctctatgaattttagaaaaagcaatcaatttcaacaagaaaattgctggaatttttattgattacactgaatctatagattaatttgagaggaactgacatctttaaaatgttgagtcttctgattcatgaccatggtatggctcttcattcatttacatcgtctttaatttctctcagcaatgttttgtagttattagtgtatgattttgcatgtagcttttgttatattttttgtctatgtattttatattttggatgctgttataactggtttttaagaagttttaattcccaattgtttattcctattatatagcaatataattgattttaatacagtgatcttgcatccttcagccttgttaagctgtagttgctttttggatgatcccacaggattttacacacaatcatgttatttgaaaatacagttttatttctttctttccaatctgattgccttttacttctcttttttgacttgttcactggctagagcttctagcacaatatcatacagaagtgatgagggtagaccaggtgtggtggctcatgcatgtaatcccagcactttgggaggccgaggcaggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaacttagcttggcgtgatggtgcacacctataattccagatacttgggaggctgaggcaggagaatcgcttgaacctgagaggcagaggttgcagtgagctgagatcatgccattgcact--------------------ccagcctaggtgacagaacgagactccgcctc-aaaaaaaaaaaagcaatgagggcagactttttttgccttaaattaagacattcctggccaggtgtggtggcccatgtctgtaatgccaatactttgggaggccaaggtgggtggatcacctgagatcaggaatttgagaccagcctggccaacatggtgaaaccccgtttctactagaaatacaaaaattagctgggcgtggcggcgggcgcctgtaatcctagctattcaggtggctgaggtaggagaatcacttaaacctgggaggcagaggttgcagtgagccaagattgtgcccttgcactacagcctgggtgacaagagtgaaagtctgtctcaaaataaataaataaataaataaataaataaataaagacatttctgaacttaggaacaaagcatttagtattttaccattgagtatgttgctagctgtaggtttttcgtagatacccctcattggattgaaaatgtttctatgaattcctcgtttgctgggaattttcttttctttgaggttcagatgttgattttgtgaaatatattttatgcatctattgatataatcatggaatttttctttttctgtctgttaatatggttaatttcatttattggtttttgaatgttgaaccaaccttgcattcctgggagtaaatgctatagataatgttgtatatatttacatattattttcaatgtgataagattttgttaatatttgcatctgtgtttatgatggtgttaatctgtaTCATCTTTACCTG-tttttttttgttg----ttgtttgtttttgagatggagtcttggtctgttgcccaggctagagtgcagtggcgcaatcttggctcactgcaacctctgcctcctgggttcaagtgatttccctgcctcagcctcccgagtagctggcagtacaggtgcttgccaccatgcccagctaaattttgtatttttggtagagatagggtttcaccatgttggtcaggctggactcgaactcctgaactcaagtgatccgcctgcctcagcctcccaaagtgctgggattacaggtgtgagccactgtgcctggccCATTAaggtgcatatgtatttaggattgtgatattttcctgttggactgattttttttttttttttttttttgagacagagtcttgctctgtctgcccagcctggagtgcagtggcgtgatctcagctctcatctcactgcaagctccgcctcctggg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41080839 5006 + 50109623 gaggcagaggttgcagtgagccgagatcacaccactgcactccagcctgggtgacagagcaagactccgtctcagg--aaaaaaaaaacaaaactaccaaattgttttccagaataactgtatcattttacattctcattggcaattcatgagtgatctagtttctccacatcctcttctacatttggtgtagcaactgtttacatttagccatttgg-ataagtgtacagggatagcccattgtagttttagtttgcatttccttaatggctagtgatattgaacatcctttcccaagtttatttccaatctgtatattctctttactgaagtgctttttcatgtcttttgcacatttttatttagattatttatttttgagttttgggagttctttatatattctagatactagtcctttatcagatacgtaatttgcaaatattttctcccactctatgccttttcatcctctgaacagggtcttt--cagagtaaaagtgcttaattttgatgaaatctattttatt-tttttcctgttatggattgtgcttttagtgtcaagactaaaaatgctttgtgtagctctaggtccagaagattttctcctaaatgtttgatgatgtacatttaagtccatggtttggtttggtttt--gtttttggtttttgtttttctttgagacagtcttactccctcacccaggctggagtgcagtggcatgatcttggcttactgcaacctctgcctcccaggtttaagcaattctggtgtctcatcctccaaagtagctggaattataggtgcgcaccatcatgcccagctaatttttgtatttttagtagagacagggtttcaccacgttggccaggctggtcttgaactcctgacttcaagtgatctacctgccatgctggaattataggcatgagccactgcaccttgttgtaatttttgtatataatgtaagatttagttcaaggttcattttcttgcctatgaatatctgattactccagaaccatttgttgaaaagccatttttcctccattgaattgcatcagcacctttgtaaaaaaccaactggg--catattagttggtcacaaattcttttagttttccttcctttgagaattttacaatttcccccagcattcttgaaggatattttcattggatatgggattctgagttgatagtttttttaacaatggaaaagtgttgtgtcacttctttctggtttctattgtctctgatgagaaataagctgtcattcaaattattttttctatataagtaacatattgtttttctctggctgctttcaaaaaatttttttgttttgttttcagaagtttgactataatgtgtcttggtgtgaacttctttgggtttatcccaattggaattctctcagcttcttgaatctattgttttatgcattttgccaagtaggaaagttttctttgaatatttgttcatttgattatttatttattaatgtatttttttgagacagggtcttgctctgttatccaggctgga-gtacagtggcagaatcatggctcactgcaacctagaccttccaggctcaagcgttcctcccacttcagtccccagagtagctgggaccacaggtgtg---caccaccacactcaatttttttgtttttgaggcggagtctcgctctttcaccaggctggaagtgcagtggcatgatcttggctcactgcaatgtctgcctcccagattccagtgattctcgtgcctcaacctcctgagtagctgggattacaggtgcctgccaccacgcctggctaatttttgaatttttggtagagacggggttttaccaagttggccaggatggtctcaatctcttgacctcatgatctgcctgccttggcctcccaaagtgctgggattacaggcgagagccaccacgcccggccccctcctatgttgtccaggctggccccaaactcctgggctcaagcaatccttctgcctttgtctaccaaaatgctgggattacagggatgagctatcatgccccactctgatcttttattaacagtctcacaggccctgaggttgtgtttattatttgtttcttttctt--ttcttc----------------ttcttttttttttggttgagatggagtctcgctctattgcccaggctggagtacagtggcgcgatcttggctcactgcaagctctgcctcctgggttcacaccattctcccgcctcagcctcccgagtagctgggactacaggtgcccaccaccatgctcggctaatttcatttttgtatttttagcagagacggggtttcaccgtgttagccagggatggtctcgatctcctgacctcatgatccacccacctcagcctcccaaagcgctggggttacaggcatgagccactgtgccggcctcttttattttctcttttctttcttgtttactttttccagtccattttctctgtgttgttcagattgagtaatttctgttgtcctgtcttccagttaactgcttgtgttgtcctcttttccacttttgagcccattcactgagctttttattttgttgttgtattttctatttctaaaatttctatctgattcttccttatatctcctatttctatgctgagactcttttttattttttCAACATGTTCATAACTGTA---tttttttttttttgagatggagtctcactctgtcacccaggctgaagtgcagtggcacgatcttggtgcactgcaacctctgcctcccaggttcaaaagattctcctgcctcaggcttccgggtagctggaattacaggcatgcaccaccacacccagctaatttttgtactttttgtagagacagggtttaaccacgttgcccaggcttgtctcaaactcctggactcaagcaaccaacctgacttggcctctcaaagtgctgggattacaggcatgagccactgtgcccggccTGAGttgcattcctctatgaattttagaaaaagcaatcaatttcaacaagaaaattgctggaatttttattgattacactgaatctatagattaatttgagaggaactgacatctttaaaatgttgagtcttctgattcatgaccatggtatggctcttcattcatttacatcgtctttaatttctctcagcaatgttttgtagttattagtgtatgattttgcatgtagcttttgttatattttttgtctatgtattttatattttggatgctgttataactggtttttaagaagttttaattcccaattgtttattcctattatatagcaatataattgattttaatacagtgatcttgcatccttcagccttgttaagctgtagttgctttttggatgatcccacaggattttacacacaatcatgttatttgaaaatacagttttatttctttctttccaatctgattgccttttacttctcttttttgacttgttcactggctagagcttctagcacaatatcatacagaagtgatgagggtagaccgggtgtggtggctcatgcatgtaatcccagcactttgggaggccgaggcaggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaacttagcttggcgtgatggtgcacacctataattccagctacttgggaggctgaggcaggagaatcgcttgaacctgg-----------------------------------------nnnnnnnnnnnnnnnnnnnnccagcctaggtgacagaacgagactctgcctc----aaaaaaaaagcaatgagggcagactttttttgccttaaattaagacattcctggccaggtgtggtggcccatgtctgtaatgccaatactttgggaggccaaggtgggtggatcacctgagatcaggaatttgagaccagcctggccaacatggtgaaaccccgtttctactagaaatacaaaaattagctgggcgtggcggcgggcgcctgtaatcctagctattcaggtggctgaggtaggagaatcacttaaacctgggaggcggaggttgcagtgagccaagattgtgcccttgcactacagcctgggtgacaagagtgaaagtctgtctca--------aaataaataaataaataaataaataaagacatttctgaacttaggaacaaagcatttagtattttaccattgagtatgttgctagctgtaggtttttcgtagatacccctcattggattgaaaatgtttccatgaattcctcgtttgctgggaattttcttttctttgaggttcagatgttgattttgtgaaatatattttatgcatctattgatataatcatggaatttttctttttctgtctgttaatatggttaatttcatttattggtttttgaatgttgaaccaaccttgcattcctgggagtaaatgctatagataatgttgtatatatttacatattattttcaatgtgataagattttgttaatatttgcatctgtgtttatgatggtgttaatctgtaTCATCTTTACCTGttttttttttgttg---tttgtttgtttttgagatggagtcttggtctgttgcccaggctagagtgcagtggcgcaatcttggctcactgcaacctctgcctcctgggttcaagtgatttccctgcctcagcctcccgagtagctggcagtacaggtgcttgccaccatgcccagctaaattttgtatttttagtagagatagggtttcaccatgttggtcaggctggactcgaactcctgaactcaagtgatccgcctgcctcagcctcccaaagtgctgggattacaggtgtgagccactgtgcctggccCATTAaggtgcatatgtatttaggattgtgatattttcctgttggactga-gtttttttttttttttgttttgagacagagtctcgctctgtctgcccagcctggagtgcagtggcgtgatctcagctctcatctcactgcaagctctgcctcctggg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3052865 5030 + 4464012 gaggcagaggttgcagtgagccgagatcacaccactgcactccagcctgggtgacagagcaagactccatctcaggaaaaaaaaaacaaaaaactaccaaattgttttccagaataactgtatcattttacattctcattggcaattcatgagtgatctagtttctccacatcctcttctacatttggtgtagcaactttttacatttagccatttgg-ataagtgtacagggatagcccattgtagttttagtttgcatttccttaatggctagtgatattgaacatccttt-ccaagtttacttccaatctgtatattctctttactgaagtgctttttcatgtcttttgcacatttttatttagattatttatttttgagttttgggagttctttatgtattctagatactagtcctttatcagatacgtagtttgcaaatattttctcccactctatgccttttcatcctctgaacagagtctttcacagagtaaaagtgcttaattttgatgaaatctattttattatttttcctgttatggattgtgcttttagtgtcaaaactaaaaatgctttgtgtagctctaggtccagaagattttctcctaaatgtttgatgatgtacatttaagtccatggtttggtttggtttttgttttttggtttttgtttttttttgagacagt-ttactccctcacccaggctggagtgcagtggcatgatcttggcttactgcaacctctgcctcccaggttcaagcgattctggtgtctcatcctccaaagtagctggaattataggtgcgcaccatcacgcccagctaatttttgtatttttagtagagacagggtttcaccacgttggccaggctgctcttgaactcctgacttcaagtgatctacctgccgtgctggaattataggcatgaggcacggcaccttgttgtaatttttgtatataatgtaagatttagttcaaggttcattttcttgcctatgaatatctgattactccagaaccatttgttgaaaagccatttttcctccattgaattgcatcagcacctttgtaaaaaaccaattggg--catattagttggtgacaaattcttttagttttccttcctttgagaattttccaatttcccccagcattcttgaaggatattttcattggatatgggattctgagttgatagtttttttaacaatggaaaagtgttgtgtcacttctttctggtttctattgtctctgatgagaaataagctgtcattcaaattattttttctatataagtaacatattgtttttctctggctgctttcaaaaaatttttttgttttgttttcagaagtttgaccataatgtgtcttggtgtgaacttctttgggtttatcccaattggaattctctcagcttcttgaatctattgttttatgcattttgccaagtaggaaagttttctttgaatatttgttc-tttgattatttatttgttaatgtatttttttgagacagggtcttgctctgttatccaggctggaggtacagtggcagaatcatggctcactgcaacctagaccttccaggctcaagcgttcctcccacttcagt-cccagagtagctgggaccacaggtgtgcaccaccaccacactcaatttttttgtttttgaggtggagtctcgctctttcaccaggctgg-agtgcagtggcatgatcttggctcactgcaatgtctgcctcccagattccagtgattctcgtgcctcaacctcctgagtagctgggattacaggtgcccgccaccacgcctggctaatttttgaatttttggtagagacagggttttaccaagttggccaggatggtctcaatctcttgacctcatgatccgcctgccttggcctcccaaagtgctgggattacaggtgagagccaccatgcctggccccctcctatgttgtccaggctggccccaaactcctgggctcaagcaatccttctgcctctgtctaccaaaatgctgggattacagggatgagctatcacaccccactctgatcttttattaacagtctcacaggccctgaggttgtgtttattatttgtttcttttctttcttcttc---------ttctttttttttttttttttggttgagatggagtctcgctctgtcgcccaggctggagtacagtggcgcgatcttggctcactgcaagctctgcctcccgggttcatgccattctcccgcctcagcctcccgagtagctgggactacaggtgcccaccaccatgctcggctaatttcgtttttgtatttttagcagaggcggggtttcaccgtgttagccagggatggtctcaatctcctgacctcatgatccaccca-ctcaccctcccaaagtgct-gggttacaggcatgagccactgtactggccttttttattttctcttttctttcttgtttactttttccagtccattttctctctgttgttcaaattgggtaatttctgttgtcctgtcttccagttaactgcttgtgttgtcctgttttccacttttgagcccattcactgagctttttattttgttgttgtattttctatttctaaaatttctatctgattcttccttatatctcctatttctatgctgagactcttttttattttttCAACATGTTCATAACTGTA---tttttttttttttgagatggagtctcactctgtcgcccaggctgaagtgcagtggcacgatctcggtgcactgcaacctctgcctcccaggttcaaaagattctcctgcctcaggctcccaggtagctggaattacaggcatgcaccaccacacccagctaatttttgtactttttgtagagacggggtttcaccacgttgcccaggcttgtctcgaactcctggactcgagcaaccaacctgacttggcctctcaaagtgctgggattacaggcatgagccactgtgcccagcctgagttgcattcctctatgaattttagaaaaagcaatcaatttcaacaagaaaattgctggaatttttattgattacactgaatctatagattaatttgagaggaactgacatctttaaaacgttgagtcttctgattcatgaccatggtatggctcttcattcatttacatcgtctttaatttctctcagcaatg-tttgtagttattagtgtatga-tttgcatgtagcttttgttatattttttgtctatgtattttatattttggatgctgttataactggtttttaagaagttttaattcccaattgtttattcctattatatagcaatataattgattttaatacagtgatcttgcatccttcagccttgttaagctgtagttgctttttggatgatcccacaggattttacacacaatcatgttatttgaaaatacagttttatttctttctttccaatctgattgccttttacttctc-tttttgacttgttcactggctagagcttctagcacaatatcatacagaagtgatgagggtagaccgggtgtggtggctcatgcctgtaatcccaacactttgggaggccaaggcaggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaacttagcttggcgtaatggtgcacacctataattccagctacttgggaggctgaggcaggagaatcgcttgaacctgagaggcagaggttgcagtgagctgagatcatgccattgcact--------------------ttagcctaggtgacagaacgagactctgcctcaaaaaaaaaaaaagcaatgagggcagactttttttgccttaaattaagacattcctggccaggtgtggtggctcatgtctgtaatgccaatactttgggaggccaaggtgggtggatcacctgagatcaggaatttgagaccagcctggccaacatggtgaaaccccgtttctactagaaacgcaaaaattagctgggcgtggcggcgggtgcctataatc--agctattcaggtggctgaggtaggagaatcacttaaacct-ggaggcggaggttgcagtgagccaagattgtg-ccttgcactacagcctgggtgacaagagtgaaagtctgtctcaaaa-----aaataaataaataaattaattaattaagacatttctgaacttaggaacaaagcatttagtattttaccattaagtatgttgctagctgtaggtctttcgtagatacccctcatcggattgaaaatgtttccatgaattcctcgtttgctgggaa-----ttttctttgaggatcagatgttgattttgtgaaatatattttatgcatctattgatataatcatgtaatttttctttttctgtctgttaatatggttaatttcatttattggtttttgaatgttgaaccaaccttgcattcctggaagtaaatgctatagataatgttgtatatatttacatattattttcaatgtgataagattttgttaatatttgcatctgtgtttatgagggtgttaatctgtaTCATCTTAACCTGttttttttttgttgttgtttgtttgtttttgagatggagtcttggtctgttgcccaggctagagcgcagtggcgcgatcttggctcactgcaacctctgcctcctgggttcaagtgatttccctgcctgagcctcccgagtagctggcattacaggtgcttgccaccatgcccagctaagttttgtatttttagtagagatggggtttcaccatgttggtcaggctggactcgaactcccgacctcaagtgatccgcctgcctcagcctcccaaagtgctgggattacaggtgtgagccactgtgcctggccCATTAagatgcatatgtatttaggattgtgatattttcctgttggactga---------tctttttttttttgagacagagtctcgctctgtctgcccagcctggagtgcagtggcgtgatctcagctctcatctcactgcaagctccacctcctgga i gorGor5.CYUI01015375v1 C 0 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24635546 19787 + 33263144 I e cerAty1.NW_011999588v1 4008822 16022 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 87549970 16531 - 96509753 I e rheMac8.chr10 84204822 16499 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I a score=46482.000000 s hg38.chr22_GL383582v2_alt 24345 193 + 162811 ttgatgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccaccaccacacccggctaatttttttgta--tttttagtagagacggggtttcaccatgttagccaggatggtcttgatctcctgacctcgtaatccgcccgtctcagcctcccaaagtgctgggattccaggtgtgagccac s panPan2.chr22 41085845 195 + 50109623 ttcacaccattctcctgcctcagcctccagagtagctgggactacaggcacccaccaccatgcccagctcatttttttgtatttttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccacccgccttggcctcccgaagtgctgggtttacgggtgtgagccac i panPan2.chr22 C 0 I 77 s gorGor5.CYUI01015375v1 3057895 193 + 4464012 ttgatgccgttctcctgcctcagcctcccgagtaggtgggactacaagtgcccaccaccacacccggctaatttttttgta--tttttagtagagacgcggtttcaccatgttagccaggatggtctcgatctcctgaccttgtaatccgcctgtctcggcctcccaaagtgctgggattacaggtgtgagccac i gorGor5.CYUI01015375v1 C 0 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24635546 19787 + 33263144 I e cerAty1.NW_011999588v1 4008822 16022 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 87549970 16531 - 96509753 I e rheMac8.chr10 84204822 16499 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I e panTro5.chr22 28780956 0 + 37823149 C a score=12209.000000 s hg38.chr22_GL383582v2_alt 24538 153 + 162811 tgcgcccggctggactgatcttttatcgttatgtaatgtcccTTTTTGTCtttttttttttttttttttttttttgagacagagtctcactctgttgcccaggctggagtgcagtggcgcaatctcggttcactgcaagctccacctcccggc s gorGor5.CYUI01015375v1 3058088 146 + 4464012 cgcgcccggctggactgatcttttatcgttatgtagtgtccctttttgtctttttttttttttttttt-------gagacagagtctcgctctgttgcccaggctggagtgcagtggcgcaatctcggttcattgcaagctctgcctcctggg i gorGor5.CYUI01015375v1 C 0 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24635546 19787 + 33263144 I e cerAty1.NW_011999588v1 4008822 16022 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 87549970 16531 - 96509753 I e rheMac8.chr10 84204822 16499 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I e panPan2.chr22 41086040 77 + 50109623 I e panTro5.chr22 28780956 0 + 37823149 C a score=131124.000000 s hg38.chr22_GL383582v2_alt 24691 486 + 162811 ttcacaccattctcctgcctcagcctccagagtagctgggactacaggcacccaccaccatgcccagctcatttttttgtatttttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccacccgccttggcctcccgaagtgctgggtttacaggtgtgagctaccacgcctggcccctttttgtcttttttttaaccgttgttgctttaaagtctgtttgtgtgatataggaatagctactcggcaaggcatgatggctcatgcctgtaatcccagcactttgggaggctgagacaggtggatcacgaggtcaggagattgagatcatctttgccaccattgtgaaaccccatctctactaaaaatacaaaaattagcttggtgtggtggcatgcccctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaactcaggaggca s panTro5.chr22 28780956 485 + 37823149 ttcacaccattctcctgcctcagcctccagagtagctgggactacaggcacccaccaccatgcccagctcatttttttgtatttttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccacccgccttggcctcccgaagtgctgggtttacgggtgtgagccaccacgcctggcccctttttgtcttttttt-aactgttgttgctttaaagtctgtttgtgtgatataggaatagctactcggcaaggcatgatggctcatgcctgtaatcccagcactttgggaggctgaggcaggcggatcacgaggtcaggagattgagatcatctttgccaccattgtgaaaccccatctctactaaaaatacaaaaattagcttggtgtggtggcatgcccctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaactcaggaggca i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3058234 482 + 4464012 ttcacaccattctcctgcctcagcctccagagtagctgggactacaggcacccaccaccatg-ccagctcatttttttgta-ttttttagtagagacgaggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccacccgccttggcctcccaaagtgctgggtttacaggtgtgagccaccacgcctgg-ccctttttgtcttttttt-aactgttgttgctttaaagtctgtttgtgtgatataggaatagctaatcggcaaggcatggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcggatcacgaggtcaggagattgagaccatccttgccaccattgtgaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggcatgcccctgtagtcccagctactcgggaggctgaagcaggagaattgcttgaactcaggaggca i gorGor5.CYUI01015375v1 C 0 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24635546 19787 + 33263144 I e cerAty1.NW_011999588v1 4008822 16022 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 87549970 16531 - 96509753 I e rheMac8.chr10 84204822 16499 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I e panPan2.chr22 41086040 77 + 50109623 I a score=1374404.000000 s hg38.chr22_GL383582v2_alt 25177 2525 + 162811 gaggttgcagtgagccaagttagcgccactgcattccagcctggtgacagagcaagacttagtctcagaaaa--------aaaaaca--aaaacaaaaaaacatagctactcttggccagctcacatctattatcctagcactttgggaggccaaggcaggcagatcatgaggtcaggagattgagaccatcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaaatttagctgggcatggtggcgcatgcctgtagtcccaactacttgggaggctgaggcaggagaattgtttgaacccaggaggcagaggttgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagcgagactccatctcaaagaaaaaaaaaaaa----gaatagctactcgtacttgcttttggtttccatttgcgtgcagtatctttttctacccctttaccttaagtttatgtgagtccctatgcattagatgagtctcttgaagacagcagatggttggttggtgaattttatccattctgtgtcttttaagtggagcattcaggccatttacattcaatgttggtattgaattatgagatagtgttttattcatagtgatagttgtgcttttttaaattgtgttattgttttataagccttttaaaacatatacttaaaggaggttctatttttgtttcaagatttagaactccttttgacatttcttgtagtgctggcttgctagtggcaaattctctcagcatttgtttgtctgaaaaagactttatctctcctcatttatgaagcatagttttgctggatacaaaattcttggctggcaattattttgtttgaggaggctaaagataggaccccaatcccttctggcttatagggtttctgctgagaaatctgctgttaatctgataggatttccattgtaggttccctgatgcttttgcctcatggctcttaagatgtttcccttcatcttgactttagataacctgatgactgtgtgcctaggtaattatctttttgcaatgaatttttcaggtgttctttcagcttcttgtatttagatgtttagatctctggtgagagcaaggaacttttccttgattattccctccaataagctttctaaatgtttagatttctcttcttcctgaggaacaccaattattcttaggtctggctgtttaacgtaatcccaaatttcttggaagctttgttcatttttaaaaattcatattcgccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaataagccaggtgtggtggcggtcgcctgtagtcccagctactcaggaggctgaggtaggagaatgctatgaacccaggagacagagcttgcagtgagccgagatcacgccactgcactccatccagcctgggcaacagagcgagactgtctcaaaaaaaaaaaattcttttttatttgtctttgtctggttgagttacttcaaatgctttgtcttcaagctctgaagttctttcttctacttgttggagataaatgttcagtgccacaaagcgaaaccagcactcaggcaaaaattttctcagcaaggcaatttacttctgcagaagggtgctgcttgtgtcaatcacgattgcaagagcacactgaacaaaggaaagcaggggtttttattcctaatgcagtccctgcctctttgtcattcctccatgggctgtggttggaccgcacaatctaaactgacccaattggctatttgtgaatactttcccaaataaggaagggaagggaaatgtgagttacaatggtgggatgtgcggtttcaaagggaggaacgggtgaagagtgggtaaccaagggaacagatgtgagttattgattaggactgacaggaaagttgtttacagttacagtaactaggggcaaggaggcatagagaacaagaaagttgagtttgagaacaaagaacaaggaagttaacaggctaaacctttgaagaattttattgtatcctacaatttcccccttttaatttttatagttcttcctcttcaaacctttttaagatgtcttggctttgctgtttgacttgatcgtctgaaaggaaacgcttatctgaataaggtggaggagagctaagggagattttagtaagtgctgtttctataagcctttgtactagcccatggttgcatggtgtgacacaacacccaacaagaatgagtacacctattatgactgcaagagaagtaagaattgaggctatgattcctttctatttaccaaaccacctgtctagccatcctgaagaagggttattgactccagaatttttagctaattcattagataaaatggtaagtccttgtaaggcttttgttatgctcccatctggggcagtatggtttgggatgaaggtac s panTro5.chr22 28781441 2525 + 37823149 gaggttgcagtgagccaagttagtgccactgcattccagcctggtgacagagcaagacttagtctcagaaaa--------aaaaaca--aaaacaaaaaaacatagctactcttggccagctcacatctataatcctagcactttgggaggccaaggcaggcagatcatgaggtcaggagattgagaccatcctggctaacgtggtgaaaccctgtctctactaaaaatacaaaaaatttagctgggcatggtggcgcatgcctgaagtcccagctacttgggaggctgaggcaggagaattgtttgaacccaggaggcggaggttgcagtgagccgagattgcgccactgcactccatcctgggcaacagagcgagactccatctcaaagaaaaaaaaaaaa---agaatagctactcgtacttgcttttggtttccatttgcgcgcagtatctttttctacccctttacctgaagtttatgtgagtccctatgcattagatgagtctcttgaagacagcagatggttggttggtgaattttatccattctgtatcttttaagtggagcattcaggccatttacattcaatgttggtattgaattatgagatagtgttttattcatagtgatagttgtgctttttaaaattgtgttattgttttataagccttttaaaacatatacttaaaggaggttctatttttgtttcaagatttagaactccttttgacatttcttgtagtgctggcttgctagtggcaaattctctcagcatttgtttgtctgaaaaagactttatctctcctcatttatgaagcatagttttgctggatacaaaattcttggctggcaattattttgtttgaggaggctaaagataggaccccaatcccttctggcttatagggtttctgctgagaaatctgctgttaatctgataggatttccattgtaggttccctgatgcttttgcctcatggctcttaagatctttcccttcatcttgactttagataacctgatgactgtgtgcctaggtaattatctttttgcaatgaatttttcaggtgttctttcaccttcttgtatttagatgtctagatctctggtgagggcaaggaacttttccttgattattccctgcaataagctttctaaatgtttagatttctcttcttcctgaggaacaccaattattcttaggtctggctgtttaacgtaatcccaaatttcttggaagctttgttcatttttaaaaattcttattggccgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccaggtgtggtggtggtcgcctgtagtcccagctactcgggaggctgaggtaggagaatgctatgaaccaaggagacagagcttgcagtgagccgagatcacgccactgcactccatccagcctgggtgacagagcgagactgtctcaaaaaaaaaaa-ttcttttttatttgtctttgtctggttgagttacttcaaatgctttgtcttcaagctctgaagttctttcttctacttgttggaGataaatgttcggtgccacaaagcgaaaccagcactcaggcaaaagttttctcagcaaggcaatttacttctgcagaagggtgctgcttgtgtcaatcatgattgcaagagcacactgaacaaaggaaagcaggggtttttattcctaatgcagtccctgcctctttgtcattcctccatgggctgtgggtggaccgcacaatctaaactgacccaattggctatttgtgaatactttcccaaataaggaagggaagggaaatgtgagttacagtggtgggacgtgccgtttcaaagggaggaacgggtgaagagtgggtaaccaagggaacagatgtgagttattgattaggactgacaggaaagttgtttacagttacagtaactaggggcaaggaggcatagagaacaagaaagttgagtttgagaacaaagaacaaggaagttaacaggctaaacctttgaagaattttattgtatcctacaatttcccccttttaatttttatagttcttcctcttcaaacctttttaagatgtcttggctttgctgtttgacttgattatctgaaaggaaacgcttatctgaataaggtggaggagagctaagggaggttttagtaagtgctgtttctataagcctttgtactagcccatggttgcatggtgtgacacaacacccaacaagaatgagtacacctattatgactgcaagagaagtaagaattgaggctatgattcctttccatttaccaaaccacctgtctagccatcctgaagaagggttattgactccagaatttttagctaattcattagataaaatggtaagtccttgtaaggcttttattatgctcccatctggggcagtatggtttgggatgaaggtac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41086117 2516 + 50109623 gaggttgcagtgagccaagttagcgccactgcattccagcctggtgacagagcaagacttagtctcag-------------aaaaca--aaaacaaaaaaaCATAGCTACTCTTGGCCAgctcacatctataatcctagcactttgggaggccaaggcaggcagatcatgaggtcaggagattgagaccatcctggctaacgtggtgaaaccctgtctctactaaaaatacaaaaaatttagctgggcatggtggcgcatgcctgaagtcccagctacttgggaggctgaggcaggagaattgtttgaacccaggaggcggaggttgcagtgagccgagatcgcgccactgcactccatcctgggcaacagagcgagactccatctcaaagaaaaaaaaa-------gaatagctactcgtacttgcttttggtttccatttgcgcgcagtatctttttctacccctttacctgaagtttatgtgagtccctatgcattagatgagtctcttgaagacagcagatggttggttggtgaattttatccattctgtatcttttacgtggagcattcaggccatttacattcaatgttggtattgaattatgagatagtgttttattcatagtgatagttgtgcttttttaaattgtgttattgttttataagccttttaaaacatatacttaaaggaggttctatttttgtttcaagatttagaactccttttgacatttcttgtagtgctggcttgctagtggcaaattctctcagcatttgtttgtctgaaaaagactttatctctcctcatttatgaagcatagttttgctggatacaaaattcttggctggcaattattttgtttgaggaggctaaagataggaccccaatcccttctggcttatagggtttctgctgagaaatctgctgttaatctgataggatttccattgtaggttccctgatggttttgcctcatggctcttaagatctttcccttcatcttgactttagataacctgacgactgtgtgcctaggtaattatctttttgcaatgaatttttcaggtgttctttcaccttcttgtatttagatgtctagatctctggtgagggcaaggaacttttccttgattattccctccaataagctttctaaatgtttagatttctcttcttcctgaggaacaccaattattcttaggtctggctgtttaacgtaatcccaaatttcttggaagctttgttcatttttaaaaattcttattggccgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacaaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccaggtgtggtggcggtcgcctgtagtcccagctactcgggaggctgaggtaggagaatgctatgaaccaaggagacagagcttgcagtgagccgagatcacgccactgcactccatccagcctgggtgacagagcgagactgtctcaaaaaaaaaaa-ttcttttttatttgtctttgtctggttgagttacttcaaatgctttgtcttcaagctctgaagttctttcttctacttgttggaGataaatgttcggtgccacaaagcaaaaccagcactcaggcaaaagttttctcagcaaggcaatttacttctgcagaagggtgctgcttgtgtcaatcacgattgcaagagcacactgaacaaaggaaagcaggggtttttattcctaatgcagtccctgcctctttgtcattcctccatgggctgtgggtggaccgcacaatctaaactgacccaattggctatttgtgaatactttcccaaataaggaagggaagggaaatgtgagttacagtggtgggacgtgccgtttcaaagggaggaacgggtgaagagtgggtaaccaagggaacagatgtgagttattgattaggactgacaggaaagttgtttacagttacagtaactaggggcaaggaggcatagagaacaagaaagttgagtttgagaacaaagaacaaggaagttaacaggctaaacctttgaagaattttattgtatcctacaatttcccccttttaatttttatagttcttcctcttcaaacctttttaagatgtcttggctttgctgtttgacttgattatctgaaaggaaacgcttatctgaataaggtggaggagagctaagggaggttttagtaagtgctgtttctataagcctttgtactagcccatggttgcatggtgtgacacaacacccaacaagaatgagtacacctattatgactgcaagagaagtaagaattgaggctatgattcctttccatttaccaaaccacctgtctagccatcctgaagaagggttattgactccagaatttttagctaattcattagataaaatggtaagtccttgtaaggcttttattatgctcccatctggggcagtatggtttgggatgaaggtac i panPan2.chr22 I 77 C 0 s gorGor5.CYUI01015375v1 3058716 2529 + 4464012 gaggttgcagtgagccaagatagcgccactgcattccagcctggtgacagagcaagacttagtctcagaaaaacaacaacaacaacaacaaaacaacaaaacatagctagtcttggccggctcacatctataatcctagcactttgggaggccaaggcaggcagatcgtgaggtcaggagattgagaccatcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaaatttagctgggcatggtggcacatgcctgtagtcccagctacttgggaagctgaggcaggagaattgtttgaacccaggaggcagaggttgcagtgagccgagatcgcgccactgcactccagcctgggcaacagagcgagactccatctcaaagaaagaaagaaaaaaaagaatagctgctcttacttgcttttggtttccatttgcatgcagtatc-ttttctacccctttaccttaagtttatgtgagtccctatgcattagatgagtctcctgaagacagcagatggttggttgctgaattttatccattctgtatcttttaagaggagcattcaggccatttacgttcaatgttggtattgaattatgagatagtgttttattcatagtgatagttgtgcttttttaaattgtgttattgttttataagccttttaaaacatatacttaaaggaggttctatttttgtttcaagatttagaactccttttgacatttcttgtagtgctggcttgctagtggcaaattctctcagcatttgtttgtctgaaaaagactttatctctcctcatttatgaagcatagttttgctggatacagaattcttggctggcaattattttgtttgaggaggctaaagataggaccccaatcccttctggcttatagggtttctgctgagaaatctgctgttaatctgataggatttccattgtaggttctctgatgcttttgcctcatggctcttaagatctttcccttcatcttgactttagataacctgatgactgtgtgcctaggtaattatctttttgcaatgaatttttcaggtgttctttgagcttcttgtatttagatgtctagatctctggtgagggcaaggaacttttccttgattattccctccaataaggtttctaaatgtttagatttctcttcttcctgaggaacaccaattattcttaggtctggctgtttaac-----cccaaatttcttggaagctttgttcatttttaaaaattctttttggccgggtgcattggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagaccacaaggtcaggagatcgagaccatcctggctaacacggtgaaacctcgtctctactaaaaatacaaaaaattagccaggtgtggtggcggtcacctgtagtcccagctactcgggaggctgaggtaggagaatgctatgaacccaggagacggagcttgcagtgagccgagatcacgccactgcactccatccagcctgggcgacagagcgagactgtctcaaaaaaaaaaa--tcttttttatttgtctttgtctggttgagttacttcaaatgctttgtcttcaagctctgaagttctttcttctacttgttggagataaatgttcggtgccacaaagcgaaaccagcactcaggcaaaagttttctcagcaaggcaatttacttctgcagaagggtgctgcttgtgtcaatcacgaatgcaagagcacactgaacaaaggaaagcaggggtttttattcctaatgcagtccctgcctctttgtcattcctccatgggctgtggttggaccgcacaatctaaactgacccaattggctatttgtgaatactttcccgaataaggaagggaagggaaatgtgagttacagtgatgggacgtgctgtttcagagggaggaatgggtgaagagtgggtaaccaagggaacagatgtgaattattgattaggactgacaggaaagttgtttacagttacagtaactaggggcaaggaggcatagagaacaagaaagttgagtttgagaacaaagaacaaggaagttaacaggctaaacctttgaagaattttattgtatcctacaatttcccccttttaatttttatagttcttcctcttcagacctttttaagatgtcttggctttgctgtttgacttgatcatctgaaaggaaacgcttatctgaataaggtggagg-gagctaagggaggttttagtaagtgctgtttctataagcctttgtactagcccatggttgcatggtgtgacacaacacccaacaagaatgagtac-cctattatgactgcaagagaagtaagaattgaggctatgattcctttccatttaccaaaccacctgtctagccatcctgaagaagggttattgactccagaatttttagctaattcattagataaaatggtaagtccttgtaaggcttttgttatgctcccatctggggcagtatggtttgggatgaaggtac i gorGor5.CYUI01015375v1 C 0 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24635546 19787 + 33263144 I e cerAty1.NW_011999588v1 4008822 16022 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 87549970 16531 - 96509753 I e rheMac8.chr10 84204822 16499 + 92844088 I e nomLeu3.chr7b 106578131 8734 - 115148730 I a score=4386948.000000 s hg38.chr22_GL383582v2_alt 27702 4838 + 162811 gacactgagttttaatcataacacaaactctacctttttcagctagtatcatgcctagggccattctgttttcctaagccatctggctagtcagccctaactcctcagctattcctttgacagcatccctggtataattaataaactgctgttggttataatagatgtaatttatacagtctacatttttattaatagttacccatggaaatattgattcaaatcctgcagactatttggtcccgggcttttaatttatcaggtactccccatgggactccagttgcatctaaataaacttgagagtcaaaaaacctataaggggcttctcttattttatggtgttgtggcttttctttttctggctgatgaaacgccagggtgaaagggatagccaaatggacaagagtgcaggtaccactccagttacttggcagagtgtccagtaagggtccgccacaataccaccatacatcttcttgaggatgactaagggcagactgatgggtaagctcttggaaaggcttaagctcactgcatcctgttaagcttccaaggaacaccaagttttccccttgtcgtgagagacaggacgtgaaattgacattgggagccagaagctggatggccctctggggctgacccgcaggatattgaactttgggatagagcaaagagagagcttggcatgattgattgccccaagctatggaatcctggaagagagctaccatgctgcccatgcctggttgactgggggaccagccgagtgtaaaggggtctatctgggtctctggctggccgtgagcacaagcataacaattgcttttgtttcatgtgcggacagaatatttggtccattccaaccaggcatttgcatcttgatattttgtttcaattgctaaagtttgccttagatcatttacttctacaatatctactttagtcttatcattgggtatagaaggtatggcagtctgattagaagaaggcttagaaggagaagagagggaagagggtgaagaggatgagggattaataaaacgcatttcaaaagaccctatgaggtctgtgccgcgttggtccctatgccatagaagcgactcaaagtaggtctagagggtcggtagaggccggagtgagagtagaaatctgcactggattacactggttatactgaaaatcgaggggaggggtgcttcctttagtaaagtgaatgtatgattttaagtatatacagccacatgttgatgaggtccagccttgatactcagttgtccacagaacatcattccagctatggcagacctgtttccctatattttatgaggagcaagagtcttggtagcgggagccttttattttaaagtggcagagatacttttctaaggctgagagttgcctttgactttggagatctctacagggtatgactaaacaggcatcaaacataataacttggggtgagtttgatttagtcacattgataacaaggtggtcagcaacagaatgaggaaagaagaaagagtaatagagtagacgaaagagagttaaacttttcttagctttagtttgagggggttttcccctgggataatggcccatgactctggaggtgacagtgctttcttgactcaggtgtgatgggtctatcctttttctgctgtccggactgcagtttcagtggttagaagcaccaggtaaggtccttcccaggctggctcaagtttctcctcttttcagctcttgataaggacgtgatccccaggctgatgttgatgtactgggaactccagaggcagagcctgtgctaggagacctttggttttaagaaaagagaaagtaggggagagactaagaatataattcctgaggaactggtgtttttggaacatcagcagtggagtgtaaataaggcaatccatagagcatcttgtaaggggaaaggccagtatcttttcgaggagcagtttggattcttTTTTTTTT---ATTTGGTTTTGTCAAATGTTTTATTGAGTGTAGACATCTGGAGTACTATAAAACATGCATTATCTGTAGATTCAAAAAGGAGCAAGCCACATTGTTCTCACTGTCAAATGTGTTAGGCTTGGCATACATGATGGAGATTAATGAAGTATCATGAGAGTAACATGGTTCTTGAAAAGCTTCTATAATTTGGAGTAGGGTCTTAATCACATGAAAAGCAAAGGTGTTCACATTTAGTGAACTTGCATTTCATTGGGGGGA--GAGGGTACACAGTATTTTAATTTTAAAACAAAAATAATTTGTTTGTCAAAGATTCCCATCTCCCCAACTTTATTTGTCCCATTGGTTTTCAGAAATTTTAATTTTTAAAAAATCAGATGCCTTTTGGAAGTTGTATGTTTATCTGAGCAGTAACTAAATTTTATTTCTTCTTCAGTTGTTAAGGTGTGTTAAATTTGAAGAAGATAATATCTCCATCTTCAACAATATAATTTCTGCCTTGTTGTCTGTACTTTCCAGCAGCCTTGACTGCATTTTCAGAACCTTCCTCTTTAAAATCTTCATATTTCATTACTTCAGCCATAATGAATCCCTTTTCAAAATCTGTGTGAATCTTTCCTGCAGCCTGAGGAGCCTTAGTCCCTTTCCTGATGGTCCGTGCACGCACTTCATCTGGGCCTGCAGTG-AAAAAGTATTTTAGTTGGAGTGCTGCAAACCCAGCCTTAATGATCTTTGGCAAAGCACTTTGTGTCATGTTCGCTTCCAGATACTGCTGTCTCTCCTCAGCACTCAATTCTTGCAACTTGAGTTCCAAGGCCCCACTAAAAGGAATGACCAAGGCACCTGGGTCATACTTGTCCACCCACTCTTTAATTTTTATCAGCCATTTGTTTTTCTTTCTAATGTAGTCTTTTTCAGAAAGATTAACCAAGTAGACCATTGGTTTTGAAGTCAAAAATAAGTGTTTATTCAACACTTCAATCTCTTTGTCATTCCAATCATGATAGAAGCGAACAGG-TTCTTTTGATCTATAACCCAGGATTTTACTTTGCACATTATATCATATTTGGGTTTTAGTTTTTTATCTCCTCCTCTCACAGCCACCTTTTCTAGTTTATCTATAATGGGCCCAGTCA-TTCCTCATCTTTAAGCTGAAGCTCTTCATGTATTATTTCTATATCTCGAATAGGATCTACACTTTCTTCAACATGTGTGATATCATCATCTTCAAAAGCACGTGTTAGATGAAAGATGCCATCACAAGCACTAAAATGAGATAAAAAAGCATTCCCCAGGCCCTGCCCATTGTGAGCTCCTTTCACAAGGCCAGCAATATCCACTACATTTAGAAAGGCAGGAATTTTGCTTGCTGGTTTGTGATATTGGCAAAGAAAGTCAAACCTTTCATCTGGCACAGGTACTCTGCTCTCATTAGGATCAATAGTGCAGAATGGGAAGTTTTCTGCTGAAGCCTGACTATTGGTTAATACATTGAAGAAAGTAGATTTCCCAACATTTGGCAATCCAACAATACCAATTTTCAGTGAGGTTCCAAATCTTCCAATGATTGGGGGTGGTTTAATTCCATCACCTCCCTTTTGAGGGGGCATCGTGCTCAGCCTGGGCTATGACACGGGGTCCCAGTAGCAGCGAGAGAAAGGTCCTGCCGGCAGCCAGAGGCGGGGAGGAAGGAGGAGAGAACGCAGGCCCGGCCCCTCCGCCGAGCGGCATGCCGCACTACGGCGGCGACAGCGGTGGAACCgccgtttggattcttaacagggcaataggaagatatttgatccctggcaaccgaatctatagaactaacttggttaaatggttctttaaggtctgattcatcctttctactctccctgatgaaggtgggtgccaaggagtatgatatttccatctaatgtctagcgcttaggatagctttttaatgatatgtgctatgaaataggtttcactgtctgagtcaatattttctattagcccaaacctgggcactatattttcaattaatgctttaactacatgattggccattgcatttgaaaagggaatagcttcgacccagtgagtgaggtgatctgctattactaagtactttaggcaaccgattgggggcatttcaatgtaatcagtttgaacactttggaatggtcttagccctgaatccctccccgcccagggatgatttctttataacttgtttgttggtttccttacatgttaagcaactatccataacctgtttggctagggtatatacccataaaccctgagaactgtgtcacacatggcttggggtccccagtgtgtcccttgatgcaggtgggtaggatttctctcatgagcggtttgaatagcatttctctttgatctggtaacacccattttccttctgagttttctttggctccatttttattaatttttccttttctgcagcagacaaggtaggggttgcagcagggggaggaagacgaggggttaagtgaa----aggtgtttcagatgaaatggcagcctgtttagccacttgatctgcaaggttatttccctgacttgtaaaggaaaagtcgttttggtgtccggggacatgtacaatggctatttcttctggcaactggagattgtttaaaacatggacgattagctcctcgtgggtaagatattttggcctttagtttttt-----tttgttttttggtgtttttttgagacggagtcttgctctgtcacccaggctggagtgcagtggcacgatctcagctcattgcaagttccacctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggatcccgc s panTro5.chr22 28783966 4843 + 37823149 gacactgagttttaatcataacacaaactctacctttttcagctagtatcatgcctagggccattctgttttcctaagccatctggctagtcagccctaactcctcagctattcctttgacagcatccctggtgtaattaatgaactgctgttggttataatagatgtaatttatacagtctacatttttattaatagttacccatggaaatattgattcaaatcctgcagactatttggttccgggcttttaatttatcaggtactccccatgggactccagttgcatctaaataaacttgagagtcaaaaaacctataaggggcttctcttattttatggtgttgtggcttttctttttctggctgatgaaacgccagggtgaaagggatagccaaatggacaagagtgcaggtaccactccagttacttggcagagtgtccagtaagggtccgccacaataccaccatgcatcttcttgaggatgactaagggcagactgatgggtaagctcttggaaaggcttaagctcactgcatcctgttaagcttccaaggaacaccaagttttccccttgtcgtgagagacaggaggtgaaattgacattgggagccagaagctggatggccctctggggctgacccgcaggatattgaactttgggatagagcaaagagagagcttggcatgattgattgccccaagctatggaatcctggaagagagctaccatgctgcccatgcctggttgactgggggaccagccgagtgtaaaggggtctatctgggtctctggctggccgtgagcacaagcataacaattgcttttgtttcatgtgcggacagaatatttggtccattccaaccaggcatttgcatcttgatattttgtttcaattgctaaagtttgccttagatcatttacttctacaatatctactttagtcttatcattgggtatagaaggtatggcagtctgattagaagaaggcttagaaggagaagagagggaagagggtgaagaggatgagggattaataaaacgcatttcaaaagaccctatgaggtctgtgccgcgttggtccctatgccatagaagcgactcaaagtaggtctagagggtcggtagaggccggagtgagagtagaaatctgcactggattacactggttatactgaaaatcgaggggaggggtgcttcctttagtaaagtgaatgtatgattttaagtatatacagccacatgttgatgaggtccagccttgatactcagttgtccacagaacatcattccagctatggcagatctgtttccctatattttatgaggagcaagagtcttggtagggggagccttttattttaaagtggcagagatacttttctaaggctgagagttgcctttgactttggagatctctacagggtatgactaaacaggcatcaaacataataacttggggtgagtttgatttagttacattgataacaaggtggtcagcaacagaatgaggaaagaagaaagagtaatagagtagacgaaagagagttaaacttttcttagctttagtttgagggggttttcccctgggataatggcccatgactctggaggtggcagtgctttcttgactcaggtgtgatgggtctatcctttttctgctgtctggactgcagtttcagtggttagaagcaccaggtaaggtccttcccaggctggctcaagtttctcctcttttcagctcttgataaggacgtgatccccaggctgatgttgatgtactgggaactccagaggcagagcctgtgctaggagacctttggttttaagaaaagagaaagtaggggagagactaagaatataattcctgaggaactggtctttttggaacatcagcagtggagtgtaaataaggcaatccatagagcatcttgtaaggggaaaggccagtatcttttcgaggagcagtttggattcttTTTTTTTT--TATTTAGTTTTGTCAAATGTTTTATTGAGTGTAGACATCTGGAGTACTATAAAATATGCATTATCTGTAGATTCAAAAAGGAGCAAGCCACATTGTTCTCACTGTCAAATGTGTTAGGCTTGGCATACATGATGGAGATTAATGAAGTATCATGAGAGTAATATGGTTCTTGAAAAGCTTCTACAATTTGGAGTAGGGTCTTAATCACATGAAAAGCAAAGGTGTTCACATTTAGTGAACTTGCATTTCATTGGGGGGG--GAGGGTACACAGTATTTTAATTTTAAAACAAAAATAATTTGTTTGTCAAAGATTCCCATCTCCCCAACTTTATTTGTCCCATTGGTTTTCAGAAATTTTAATTTTTAAAAAATCAGATGCCTTTTGGAAGTTGTATGTTTATCTGAGCAGTAACTAAATTTTATTTCTTCTTCAGTTGTTAAGGTGTGTTAAATTTGAAGAAGATAATATCTGCATCTTCAACAATATAATTTCTGCCTTGTTGTCTGTACTTTCCAGCAGCCTTGACTGCATTTTCAGAACCTTCCTCTTTAAAATCTTCATATTTCATTACTTCAGCCATAATGAATCCCTTTTCAAAATCTGTGTGAATCTTACCTGCAGCCTGAGGAGCCTTAGTCCCTTTCCTGATGATCCGTGCACACACTTCATCTGGGCCTGCAGTG-AAAAAGTATTTTAGTTGGAGTGCTGCAAACCCAGCCTTAATGATCTTTGGCAAAGCACTTTGTGTCATGTTCGCTTCCAGATACTGCTGTCTCTCCTCAGCACTCAATTCTTGCAACTTGAGTTCCAAGGCCCCACTAAAAGGAATGACCAAGGCACCTGGGTCATACTTGTCCACCCACTCTTTAATTTTTATCAGCCATTTGTTTTTCTTTCTAATGTAGTCTTTTTCAGAAAGATTAACCAAGTAGACCATTGGTTTTGAAGTCAAAAATAAGTGTTTATTCAACACTTCAATCTCTTTGTCATTCCAATCATGATAGAAGCGAACAGG-TTCTTTTGATCTATAACCCAGGATTTTACTTTGCACATTATATCATATTCGGGTTTTAGTTTTTTATCTCCTCCTCTCACAGCCACCTTTTCTAGTTTATCTATAATGGGCCCAGTCA-TTCCTCATCTTTGAGCTGAAGCTCTTCATGTATTATTTCTATATCTCGAATAGAATCTACACTTTCTTCAACATGTGTGATATCATCATCTTCAAAAGCACGTGTTAGATGAAAGATGCCATCACAAGCACTAAAATGAGATAAAAAAGCATTCCCCAGGCCCTGCCCATTGTGAGCTCCTTTCACAAGGCCAGCAATATCCACTACATTTAGAAAGGCAGGAATTTTGCTTGCTGG-TTGTGATATTGGCAAAGAAAGTCAAACCTTTCATCTGGCACAGGTACTCTGCTCTCATTAGGATCAATAGTGCAGAATGGGAAGTTTTCTGCTGAAGCCTGACTATTGGTTAATACATTGAAGAAAGTAGATTTCCCAACATTTGGCAATCCAACAATACCAATTTTCAGTGAGGTTCCAAATCTTCCAATGATTGGCGGTGGTTTAATTCCATCACCTCCCTTTTGAGGGGGCATCGTGCTCAGCCTGGGCTATGACACGGGGTCCCAGTAGCAGCGAGAGAAAGGTCCTGCCAGCAGCCGGAGGCGGGGAGGAAGGAGGAGAGAACGCAGGCCCGGCCCCTCCGCTGAGCGGCATGCCGCACTACGGCGGCGACAGCGGTGGAACCgccgtttggattcttaacagggcaataggaagacatttgatccctggcaaccgaatctatagaactaacttggttaaatggttctttaaggtctgattcatcctttctactctccctgatgaaggtgggtgccaaggagtatgatatttccatctaatgtctagcgcttaggatagctttttaatgatatgtgctatgaaataggtttcactgtctgagtcagtattttctgttagcccaaacctgggcactatattttcaattaatgctttaactacatgattggccattgcatttgaaaagggaatagcttcgacccagtgagtgaggtgatctgctattactaagtactttaggcgactgattgggggcatttcagtgtaatcagtttgaacactttggaatggtcttagccctgaatccctcctcgcccagggatgatttctttataacttgtttgttggtttccttacatgttaagcaactatccataacctgtttggctagggtatatacccataaaccctgagaactatgtcacacatggcttggggtccccagtgtgtcccttgatgcaggtgggtaggatttctctcatgaggggtttgaatagcatttctctttgatctggtaacacccattttccttctgagttttctttggctccatttttattaatttttccttttctgcagcagacaaggtaggggttgcagcagggggaggaagacaaggggttaagtgaa----aggtgtttcagatgaaatggcagcctgtttagccacttgatctgcaaggttatttccctgacttgtaaaggaaaagtcgttttggtgtccggggacatgtacaatggctatttcttctggcaactggagattgtttaaaacatggacgattagctcctcgtgggtaagatattttggcctttagtttttttgttgtttgttttttggtgtttttttgagacggagtcttgctctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaagttccacctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggctcccgc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41088633 4840 + 50109623 gacactgagttttaatcataacacaaactctacctttttcagctagtatcatgcctagggccattctgttttcctaagccatctggctagtcagccctaactcctcagctattcctttgacagcatccctggtgtaattaataaactgctgttggttataatagatgtaatttatacagtctacatttttattaatagttacccatggaaatattgattcaaatcctgcagactatttggttccgggcttttaatttatcaggtactccccatgggactccagttgcatctaaataaacttgagagtcaaaaaacctataaggggcttctcttattttatggtgttgtggcttttctttttctggctgatgaaacgccagggtgaaagggatagccaaatggacaagagtgcaggtaccactccagttacttggcagagtgtccagtaagggtccgccacaataccaccatgcatcttcttgaggatgactaagggcagactgatgggtaagctcttggaaaggcttaagctcactgcatcctgttaagcttccaaggaacaccaagttttccccttgtcgtgagagacaggaggtgaaattgacattgggagccagaagctggatggccctctggggctgacccgcaggatattgaactttgggatagagcaaagagagagcttggcatgattgattgccccaagctatggaatcctggaagagagctaccatgctgcccatgcctggttgactgggggaccagccgagtgtaaaggggtctatctgggtctctggctggccgtgagcacaagcataacaattgcttttgtttcatgtgcggacagaatatttggtccattccaaccaggcatttgcatcttgatattttgtttcaattgctaaagtttgccttagatcatttacttctacaatatctactttagtcttatcattgggtatagaaggtatggcagtctgattagaagaaggcttagaaggagaagagagggaagagggtgaagaggatgagggattaataaaacgcatttcaaaagaccctatgaggtctgtgccgcgttggtccctatgccatagaagcgactcaaagtaggtctagagggtcggtagaggccggagtgagagtagaaatctgcactggattacactggttatactgaaaatcgaggggaggggtgcttcctttagtaaagtgaatgtatgattttaagtatatacagccacatgttgatgaggtccagccttgatactcagttgtccacagaacatcattccagctatggcagatctgtttccctatattttatgaggagcaagagtcttggtagggggagccttttattttaaagtggcagagatacttttctaaggctgagagttgcctttgactttggagatctctacagggtatgactaaacaggcatcaaacataataacttggggtgagtttgatttagttacattgataacaaggtggtcagcaacagaatgaggaaagaagaaagagtaatagagtagacgaaagagagttaaacttttcttagctttagtttgagggggttttcccctgggataatggcccatgactctggaggtggcagtgctttcttgactcaggtgtgatgggtctatcctttttctgctgtctggactgcagtttcagtggttagaagcaccaggtaaggtccttcccaggctggctcaagtttctcctcttttcagctcttgataaggacgtgatccccaggctgatgttgatgtactgggaactccagaggcagagcctgtgctaggagacctttggttttaagaaaagagaaagtaggggagagactaagaatataattcctgaggaactggtctttttggaacatcagcagtggagtgtaaataaggcaatccatagagcatcttgtaaggggaaaggccagtatcttttcaaggagcagtttggattcttTTTTTTA----ATTTAGTTTTGTCAAATGTTTTATTGAGTGTAGACATCTGGAGTACTATAAAATATGCATTATCTGTAGATTCAAAAAGGAGCAAGCCACATTGTTCTCACTGTCAAATGTGTTAGGCTTGGCATACATGATGGAGATTAATGAAGTATCATGAGAGTAATATGGTTCTTGAAAAGCTTCTACAATTTGGAGTAGGGTCTTAATCACATGAAAAGCAAAGGTGTTCACATTTAGTGAACTTGCATTTCATTGGGGGG---GAGGGTACACAGTATTTTAATTTTAAAACAAAAATAATTTGTTTGTCAAAGATTCCCATCTCCCCAACTTTATTTGTCCCATTGGTTTTCAGAAATTTTAATTTTTAAAAAATCAGATGCCTTTTGGAAGTTGTATGTTTATCTGAGCAGTAACTAAATTTTATTTCTTCTTCAGTTGTTAAGGTGTGTTAAATTTGAAGAAGATAATATCTGCATCTTCAACAATATAATTTCTGCCTTGTTGTCTGTACTTTCCAGCAGCCTTGACTGCATTTTCAGAACCTTCCTCTTTAAAATCTTCATATTTCATTACTTCAGCCATAATGAATCCCTTTTCAAAATCTGTGTGAATCTTACCTGCAGCCTGAGGAGCCTTAGTCCCTTTCCTGATGATCCGTGCACACACTTCATCTGGGCCTGCAGTG-AAAAAGTATTTTAGTTGGAGTGCTGCAAACCCAGCCTTAATGATCTTTGGCAAAGCGCTTTGTGTCATGTTCGCTTCCAGATACTGCTGTCTCTCCTCAGCACTCAATTCTTGCAACTTGAGTTCCAAGGCCCCACTAAAAGGAATGACCAAGGCACCTGGGTCATACTTGTCCACCCACTCTTTAATTTTTATCAGCCATTTGTTTTTCTTTCTAATGTAGTCTTTTTCAGAAAGATTAACCAAGTAGACCATTGGTTTTGAAGTCAAAAATAAGTGTTTATTCAACACTTCAATCTCTTTGTCATTCCAATCATGATAGAAGCGAACAGG-TTCTTTTGATCTATAACCCAGGATTTTACTTTGCACATTATATCATATTCGGGTTTTAGTTTTTTATCTCCTCCTCTCACAGCCACCTTTTCTAGTTTATCTATAATGGGCCCAGTCA-TTCCTCATCTTTGAGCTGAAGCTCTTCATGTATTATTTCTATATCTCGAATAGGATCTACACTTTCTTCAACATGTGTGATATCATCATCTTCAAAAGCACGTGTTAGATGAAAGATGCCATCACAAGCACTAAAATGAGATAAAAAAGCATTCCCCAGGCCCTGCCCATTGTGAGCTCCTTTCACAAGGCCAGCAATATCCACTACATTTAGAAAGGCAGGAATTTTGCTTGCTGG-TTGTGATATTGGCAAAGAAAGTCAAACCTTTCATCTGGCACAGGTACTCTGCTCTCATTAGGATCAATAGTGCAGAATGGGAAGTTTTCTGCTGAAGCCTGACTATTGGTTAATACATTGAAGAAAGTAGATTTCCCAACATTTGGCAATCCAACAATACCAATTTTCAGTGAGGTTCCAAATCTTCCAATGATTGGCGGAGGTTTAATTCCATCACCTCCCTTTTGAGGGGGCATCGTGCTCAGCCTGGGCTATGACACGGGGTCCCAGTAGCAGCGAGAGAAAGGTCCTGCCAGCAGCCGGAGGCGGGGAGGAAGGAGGAGAGAACGCAGGCCCGGCCCCTCCGCCGAGCGGCATGCCGCACTACGGCGGCGACAGCGGTGGAACCgccgtttggattcttaacagggcaataggaagacagttgatccttggcaaccgaatctatagaactaacttggttaaatggttctttaaggtctgattcatcctttctactctccctgatgaaggtgggtgccaaggagtatgatatttccatctaatgtctagcgcttaggatagctttttaatgatatgtgctatgaaataggtttcactgtctgagtcagtattttctgttagcccaaacctgggcactatattttcaattaatgctttaactacatgattggccattgcatttgaaaagggaatagcttcgacccagtgagtgaggtgatctgctattactaagtactttaggcgaccgattgggggcatttcagtgtaatcagtttgaacactttggaatggtcttagccctgaatccctccccgcccagggatgacttctttataacttgtttgttggtttccttacatgttaagcaactatccataacctgtttggctagggtatatacccataaaccctgagaactatgtcacacatggcttggggtccccagtgtgtcccttgatgcaggtgggtaggatttctctcatgaggggtttgaatagcatttctctttgatctggtaacacccattttccttctgagttttctttggctccatttttattaatttttccttttctgcagcagacaaggtaggggttgcagcagggggaggaagacaaggggttaagtgaa----aggtgtttcagatgaaatggcagcctgtttagccacttgatctgcaaggttatttccctgacttgtaaaggaaaagtcgttttggtgtctggggacatgtacaatggctatttcttctggcaactggagattgtttaaaacatggacgattagctcctcgtgggtaagatattttggcctttagtttttttgttgtttgttttttggtgtttttttgagacagagtcttgctctgtcacccaggctggagtgcagtggcaccatctcagctcactgcaagttccacctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggctcccgc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3061245 4838 + 4464012 gacactgagttttaatcataacacaaactctacctttttcagctagtatcatgcctagggccattctgttttcctaagccatctggctagtcagccctaactcctcagctattcctttgacagcatccctggtataattagtaaactgctgttggttataatagatgtaatttatacagtctacatttttattaatagttacccatggaaatattgattcaaatcctgcagactatttggtcccaggcttttaatttatcaggtactccccatgggactccagttgcatctaaataagcttgagagtcaaaaaacctataaggggcttctcttattttatggtgttgtggcttttctttttctggctgatgaaacgccagggtgaaagggatagccaaatggacaagagtgcaagtaccactccagttacttggcagagtgtccagtaagggtccgccacaataccaccatacatcttcttgaggatgactaagggcagactgatgggtaagctcttggaaaggcttaagctcactgcatcctgttaagcttccaaggaacaccaagttttccccttgtcgtgacagacaggaggtgaaattgacattgggagccggaagctggatggccctctggggctgacccgcaggatattggactttgggatagagcaaagagagagcttggcatgattgattgcctcaagctttggaatcctggaagagagctaccatgctgcccatgcctggttgactgagggaccagccgagtggaaaggggtctatctgggtttctggctgaccgtgagcacaagcataaaaattgcttttatttcatgtgcggacagaatatttggtccattccaaccaggcatttgcatcttgatattttgtttcaattgct--agtttgtcttagatcatttacttctacaatatctactttagtcttatcattgggtatagaaggtatggcagtctgattagaagaaggcttagaaggagaagagagggaagagggtgaagaggatgagggattaataaaacacatttcaaaagaccctatgaggtctgtgccgcgttggtccctatgccatagaagcgactcaaagtaggtctagagggtcggtagaggccagagtgagagtagaaatctgcactggattacattggttatactgaagatcgaggggaggggtgcttcctttagtaaagtgaatgtatggttttaagtatatacagccacatgttgatgaggtccagccttgatactcagttgtccacagaacatcattccagctatggcagacctgtttccctatattttatgaggagcgagagtcttggtagggggagccttttattttaaagtggcagagatacttttctaaggctgagagttgcctttgactttggagatctctacagggtatgactaaacaggcatcaaacataataacttggggtgagtttgatttagttacattgataacaaggtggtcagcaacagaatgaggaaagaagaaagagtaatagagtagacgaaagagagttaaacttttcttaactttagtttgagggggttttcccctgggataatggcccatcactctggaggtggtagtgctttcttgactcaggtgtgatgggtctatcctttttctgctgtctggactgcagtttcagtggttagaagcaccaggtaaggtccttcccaggctggctcaagtttctcctcttttcagctcttgataaggacgtgatccccaggctgatgttgatgtactgggaactccagaggcagagcctgtgctaggagacctttggttttaagaaaagagaaagtaggggagagaccaagaatataattcctgaggaactggtctttttggaacatcagcagtggagtgtaaataaggcaatccatagagcatcttgtaaggggaaaggccagtatcttttcgaggagcagtttggattctCTTTTTTTTTTTTTTTGGTTTTGTCAAATGTTTTATTGAGTGTAGACATCTGGAGTACTATAAAGCATGCATTATCTGTAGATTCAAAAAGGAGCAAGCCACATTGTTCTCACTGTCAAATGTGTTAGGCTTGGCATACATGATGGAGACTAATGAAGTATCATGAGAGTAATATGGTTCCTGAAAAGCTTCTACAATTTGGAGTAGGGTCTTAATCACATGAAAAGCAAAGGTGTTCACATTTAGTGAACTTGCATTTCATTGAGGGGG--GAGGGTACACAGTATTTTAATTTTAAAACAAAAATAATTTGTTTGTCAAAGATTCCCATCTCCCCAACTTTATTTGTCCCATTGGTTTTCAGAAATTTTAATTTTTAAAAAATCAGATGCCTTTTGGAAGTTGTATGTTTATCTGAGCAATAACTAAATTTTATTTCTTCTTCGGTTGTTAAGGTGTGTTAAATTTGAAGAAGATAATATCTCCATCTTCAACAATATAATTTCTGCCTTGTTGTCTGTACTTTCCAGCAGCCTTGACTGCATTTTCAGAACCTTCCTCTTTAAAATCTTCATATTTCATTACTTCAGCCATAATGAATCCCTTTTCAAAATCTGTGTGAATCTTTCCTGCAGCCTGAGGAGCCTTAGTCCCTTTCCTGATGGTCCGTGCACGCACTTCATCTGGGCCTGCAGTGAAAAAAGTATTTTAGTTGGAGTGCTGCAAACCCAGCCTTAATGATCTTTGGCAAAGCACTTTGTGTCATGTTCGCTTCCAGATACTGCTGTCTCTCCTCAGCACTCAATTCTTGCAACTTGAGTTCCAAGGCCCCACTAAAAGGAATGACCAAGGCACCTGGGTCATACTTGTCCACCCACTCTTTAATTTTTATCAACCATTTGTTTTTCTTTCTAATGTAGTCTTTTTCAGAAAGATTAACCAAGTAGACCATTGGTTTTGAAGTCAAAAATAAGTGTTTATTCAACACTTCAATCTCTTTGTCATTCCAATCATGATAGAAGCGAACAGG-TTCTTTTGATCTGTAACCCAGGATTTTACTTTGCACATTATATCATATTCAGGTTTTAGTTTTTTAT---CTCCTCTCACAGCCACCTTTTCTAGTTTATCTATAACGGGCCCAGTCA-TTCCTCATCTTTAAGCTGAAGCTCTTCATGTATTATTTCTATATCTCGAATAGGATCTACACTTTCTTCAACATGCGTGATATCATCATCTGCAAAAGCACGTGTTAGATGAAAGATGCCATCACAAGCACTAAAATGAGATAAAAAAGCATTCCCCAGGCCCTGCCCATTGTGAGCTCCTTTCACAAGGCCAGCAATATCCACTAC-TTTAGAAAGGCAGGAATTTTGCTTGCTGGTTTGTGATATTGGCAAAGAAAGTCAAACCTTTCATCTGGCACAGGTACTCTGCTCTCATTAGGATCAATAGTGCAGAATGGGAAGTTTTCTGCTGAAGCCTGACTATTGGTTAATACATTGAAGAAAGTAGATTTCCCAACATTTGGCAATCCAACAATACCAATTTTCAGTGAGGTTCCAAATCTTCCAATGATTGGGGGTGGTTTAATTCCATCACCTCCCTTTTGAGGGGGCATCGTGCTCAGCCTGGGCTATGACATGGGGTCCCAGT---AGCGAGAGAAAGGTCCTGCCGGCAGCCGGAGGCGGGGAGGAAGGAGGAGAGAACGCAGGCCCGGCCCCTCCGCCGAGCGGCATGCCGCACTACTGCGGCGACAGCGGCGGAACtgccgtttggattcttaacagggcaataggaagacatttgatccatggcaaccgaatctatagaactaacttggttaaatggttctttaaggtctgattcatcctttctactctccctgatggaggtgggtgccaaggagtatggtatttccatctaatgtctagcgcttaggatagctttttaatgatatgtgctatgaaataggtttcactgtctgagtcaatattttctattag-ccaaacctgggcactatattttcaattaatgctttaactacatgattggccattgcatttgaaaagggaatagcttcgacccagtgagtgaggtgatctgctattactaagtactttaggcgaccgattgggggcatttcagtgtagtcagtttgaacactttggaatggtcttagccctgaatccctccccgcccagggatgatttctttataacttgtttgttggtttccttacatgttaagcaactgtccataacctgtttggctagggtataca-ccatacaccctgagaactgtgtcacacatggcttggggtccccagtgggtcccttgatgcaggtgggtaggatttctctcatgaggggtttgaatagcatttctctttgatctggtaacaccgattttccttctgagttttctttggctccatttttattaatttttccttttctgcagcagacaaggtaggggttgcagca-ggggaggaagacaaggggttaagtgaaagataggtgttgcagatgaaatggcagcctgtttagccacttgatctgcaaggttatttccctgacttgtaaaggaaaagtcgttttggtgtccggggacatgtacaatggctatttcttctggcaactggagattgtttaaaacatggacgattagctcctcgtgggtaagatattttggcctttagttttttt-ttgtttgttttttggtgtttttttgagacggagtcttgctctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaagttccacctcccgggttcatgccattctcctgcctcagcctcctgagtagctgggactacaggctcccgc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106586865 4819 - 115148730 gacactgagttttaatcataacacaaactctccctttttcagccaatatcatgcctagggccattctgttttcctaagccatctggctagtcggccctaactgctcagctattcctttgatagcatccctggtataattaataaactgctgttggttataac---------------------tatttttattaatagttacccatggaaatattgattcaaatcctgcagactatttggtcccgggcttttaatttatcaggtactccccatgggactccaattgcatctaaataaacttgagagtcaaaaaacctgtaaggggcttctcttattttatggtgtcgtggcttttctttttctggttgatgaaatgccagggtgaaagggatagccaattggacaagagtgcaagtaccactccagttacttggcagagtgtccagtaagggtccgccacaataccaccatacatctgcttgaggatgactaagggcagactgatgggtaagctcttggaaaggcttaagctcactgcatcctgttaagcttccaaggaacaccaagttttccccttgttgtgagaaacaggaggtgaaattgatgttgggagacggaaggtggatggccctctggggctgacctgcaggatgttgaactgtgggatagagcagagagagagtttggcatgattgattgccccaagctatagaatcctggaagagagctaccatgctgcccatgcctggttgactgggggactgtccgagtggaaaggggtcaatctgggtctctggctggccgtgagcacaagcataacaattgcttttgtttcatgtgcggacagaatatttgatccattccaaccaggcatttgcatcttgatattttgtttcagttgctaaagtttgccttagatcatttacttctacaatatctactttagtcatatcattgggtgtggaaggtatggcagtctgattagaagaaggcttagaaggagaagagagggaaggaggtgaagaggatgagagattaataaaacgcatttcaaaagaccctatgaggtctgagccgcgttggtccctatgccatagaagcgactcaaagtaggtctagagggttggtagaggccggagtgagagtagaaatcttcactggattacattggttgtaatgaaaatcgaggggaggggtgcttcctttagtaaagtgaatgtatggttttaagtatatacagccacatgttgatgaggtccagccttgatactcagttgtccacagaacatcattccagctatggcagacctgtttccctatattttctgag----aagagtcttggtaggaggagcctcttattttaaagcggcagagatatttttctgaggctgagagttgcctttgactttggagatctctacagggtatgactaaacaggcatcaaacataataacttggggtgagtttgatttagttacattgataacaaggtggtcagcaacagaatgaggaaagaagaaagagtagtagaataaatgaaagagagttaaacttttcttagctttagtttgagagggttttcccctgggataatggcccatgactctggaggtggcagtgctttcttgactcgggtgtgatgggtctatcctttttctgctgtctggactacagtttcagtggttagaagcaccaggtaaggtccttcccaggctggctcaagtttctcctcttttcagctcttgataaggatgtgatccccaggctgatgttgatgtactgggaactccagaggcagagcctgtgctaggagacctttggttttaagaaaagagaaagtaggggagagaccaagaatataattcctgaggaactggtcttttcggaacatcagcagtggagtgtaaataaggcaatccatagagcatctcgtaaggggaaaggccagtatcttttcgaggagcagtttggattcttTTTTTTTT-TTTTTTGGTTTTGTCAAATGTTTTATTGAGTGTAGATATCTGGAGTACTATAAAACATGCATTATCTGTAGATTCAAAAAGGAGCAAGCCACATTGTCCTCACTGTCAAATGTGTTAGGCTTGGCATACATGATGGAGATTAATGAAGTATCATGAGAGTAATATGGTTCCCGAAAAGCTTCTACAATTTGGAGTAGGGTCTTAATCACGTGAGAAGCAAAGATGTTCACATTTAGTGAACTTGCATTTCATTGAGGGGGGAGAGGGTACACAGCATTTTAATTTTAAAACAAATAAAAATAATTTGTCAAAGATTTCCATCTCCCCAACTTTATTTGTCCCATTGGTTTTCAGAAATTTTAATTTTTAAAAAATCAGATGCCTTTTGGAAGTTGTATGTTTATCTGAGCAATAACTAAATTTTATTTCTTCTTCAGTTGTTGAGGTGTGTTAAATTTGAAGAAGATAGTATCTCCATCTTCAACAATATAATTTCTGCCTTGTTGTCTGTACTTTCCAGCAGCCTTGACTGCATTTTCAGAACCTTCCTCTTTAAAATCGTCGTATTTCACTACTTCAGCCATAATGAATCCCTTTTCAAAATCTGTGTGAATCTTTCCTGCAGCCTGAGGAGCCTTTGTCCCTTTCCTGATGGTCCATGCACGCACTTCATCTGGGCCTGCAGTG-AAAAAGTATTCTAGTTGGAGTGCTGCAAACCCAGCCTTAATGATCTTTGGCAAAGCACTTTGTGTCATGTTCGCTTCCAGATACTGCTGTCTCTCCTCAGCACTCAATTCTTGCAACTTGAGTTCCAAGGCCCCACTAAAAGGAATGACCAAGGCACCTGGGTCATACTTGTCCACCCACTCTTTAATTTTTATCAACCATTTGTTTTTCTTTCTAATGTAGTCTTTTTCAGAAAGATTAACCAAGTAGACCATTGGTTTTGAAGTCAAAAATAAATGTTTATTCAACACTTCAATCTCTTTGTCATTCCAATCATGATAGAAGGGAACAGGTTTCTTTTGATCTATAACCCAGGATTTTACTTTGCACGTTATATCATATTCAGGTTTTAGTTTTTTATCTCCTCCTCTCACAGCCACCTTTTCTAGTTTATCTATAATGGGCCCAATCATTTCCTCATCTTTAAGCTGAAGCTCTTCATGTATTATTTCTATATCTCGAATAGGATCTACACTTTCTTCAACATGCGTGATATCATCATCTTCAAAAGCACGTGTTAGATGAAA-ATGCCATCACAAGCACTAAAATGAGATAAAAAAGCATTCCCCAGGCCCTGCCCATTGTGAGCTCCTTTCACAAGGCCAGCAATATCCACTACATTTAGAAAGGCAGGAATTTTGCTTGCTGGTTTGTGATATTGGCAAAGAAAGTCAAACCTTTCATCTGGCACAGGTACTCTGCTCTCATTAGGATCAATAGTGCAGAATGGGAAGTTTTCTGCTGAAGCCTGACTATTGGTTAATATATTGAAGAAAGTAAATTTCCCAACATTTGGCAATCCAACAATACCAATTTTCAGTGAGGTTCCAAATCTTCCAATGATTGGGGGTGGTTTAATTCCATCACCTCCCTTTTTAGGGGGCATCGTGCTCAGCCTGGGCTATGACACAGGGTCCCAGTAGCAGCGAGAGAAAGGTCCTGCC----GCCGGAGGCGGGGAGGAAGGAGGAGAGAATGCAGGCCTGGCCGTTCCGCCGAGTGGCATGCTGCACGACGGCGGCAACAGCGGTGGAACtgcagtttgggttcttaacaaggcaataggaagacatttggtccatggcaaccgaatctatagaactaacttggttaaatggttctttaaggtctgattcatcctttctactctccctgatgaaggtgggtgccaaggagtatgatatttccatctaatgtctagcgcttaggatagctttttaatgatatgtgctatgaaataggtttcactgtctgagtcaatattttctattagcccaaacctgggcactatatttttaattaatgctttaactacatgattggccatttcatttgaaaagggaatagcttcgacccagtgagtgaggtgatctgccattactaagtactttaggcgaccgattgggggcatttcagtgtagtcagtttgaacactttggaatggtcttagccctgaatccctccccgcccagggatgatttctttatgacttgtttgttggtttccttacatattaagcaactatccgtaacctgtttggctagggtatacacccataaaccctgagaactgtgtcacacatggcttggggtccccagtgggtcccttgatgcaggtgggtaggatttctctcatgaggggtttgaatagcatttctctttgatctggtaacacccattttccttctgagttttctttggctccatttttattaatttttccttttctgcagcagacaaggtaggggttgtagtagggggaggaagacaaggggttaagtgaaagatgggtgtttcagatgaaatggcagcctgtttagccacttgatctgcaaggttatttccctgacttgtaaaggaaaagtcgttttggtgtccggggacatgtacaatggctatttcttctggcaactggagattgtttaaaacatggacgattagctcttcgtgggtaagatattttggcctttaGtttttt----gtttgttttttggtgtttttttgagacggagtcttgctctgtcacccaggctagagtgcagtggcacgatctcagctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggctcccac i nomLeu3.chr7b I 8734 I 6581 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24635546 19787 + 33263144 I e cerAty1.NW_011999588v1 4008822 16022 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 87549970 16531 - 96509753 I e rheMac8.chr10 84204822 16499 + 92844088 I a score=1307211.000000 s hg38.chr22_GL383582v2_alt 32540 2365 + 162811 taccacacctggctaatttttttgtatttttagtagagacggggtttcaccatgttagccaggatggtcttgatctcctgacctcgtgatccgcccacctcagcctcccaaagtgctgggattacaggcatgagccaccgcgcctggcctggcctttagtattaataagaccttgctcagcccaaatttttccaaatatatgagctactccaaaaatgtatttagaatcagtatgaatagttccttccttgctctgtaagtgttttaaaacctggctgagtgcaaatagttcacatgctttggcagaccaactattgggcaaccttcctgactctgtttcttcaagagtttctccatcaattactgaatacccattgtatttttctcctttaattgcttgggatcaaccatctataaataagtgtcaccccattttgaaaggggtctctcttagatccggcctgacctttgtttggtagtcagttagatctagacataagtgttctctttttagatttgggtcccctgttaagaaacctctcggattgagtgagttatcagtagtcaaggttaaatcatctttttagtaaaatagcctcctattttaagattctggagtcagtgagccaccttcctgc-ttttttatttaaaatagctctaacttggtggggtgtgcttacagtcaatttccccccaaagattaattttctactttcttcaactaatactgctgtagctgcaacgaattggatgcactgaggctacccacaggtgactgggtctaaaatttttgataggaaggctacgggctgccggtgaccaccatgttcttgagtaagaacccctaaagctaccccgttatttacattaacaaaaagatgaaatggcttttctagggaagctaaggctaagacaggggcagttatgagtttgtatttcagctcttcaacctgattgacttcctcagaagtccacaggagacggtccagtttccactgggtaagcttttcatataaaagtttactttttagggcatatgagtcaatccataagcatcaatatccaactaatcctagaaattttctgagttattgcttagtttgaggcaagggtaaggacacgatgccttcaactcgttcaggtcctatcctttgcttacctgcacttattaagtggcctaaatatttaacttcaggctccacatactgaagctttccctttaagaaccataacccctcgaactccagatggttaaggatatgtgtagagaagccagctactttctctacatcttcaacagatacgagaatatcatccatgtactggagcaggcatatttgctttgggatgacaactttttctaacacttgttctaaaatttgaccaaaaaggtttggagagtctgtaaacccttgaggtaaaactgtccatcaataatgttgttttcgccctgaatggggatcctaccactcaaaagcaaatatgtctcagctgtcttcagccaaggggcatgcccagaaggcatcttttaaatctattactgtaaacaactgatgg-ttttttggaattttgctgagaatggtgtatgggttggggacaacaggatggttagtttggactatttgatggctctaagatcttgtaccaagtcggtatgacgcatctaatttcttgactggcaatattggagtgttatacggggacatacagggttcaaggagcccatctttaataagactttcaattataggctttaatcctatcctgccctctaggggtttggggtattgtttcctccttactacttccctggggattcttaacttgatgtggattggagggattcagagtttctcccggtttccttcccttgaccagacactaggattaatgcatttttcatctgtggtggtgagtaggtttaatgaggtaaagaatcctttaggaccaacttgtaagcctgtgcctaattctagcattaagtctcttcctaatagattagtttctgcctcagggatcaacaaaaattggatatgagtcagccgatcttggtatttaacttctgtactttctaagatttttgctttaaatccttctccttttaccccagagactaaaagttcttctgaagagcaggcaatgttggatggggggaagcaaatggaggagcgagccactcctgaattgactaaaaggtgataagctcatgtttggttcccacctgtaaatttatcaagggctcctggtgggactcgagataaacagagcccctgacccccctgttcttcctcaaaagtcatgagttgaagggcttctttctccttttccagtttgggacattctcttttgaagtggcctgcccttc s panTro5.chr22 28788809 2366 + 37823149 taccacgcctggctaatttttttgtatttttagtagagacggggtttcaccatgttagccaggatggtcttgatctcctgacctcgtgatccgcccacctcagcctcccaaagtgctgggattacaggcatgagccactgcgcctggcctggcctttagtattaataagaccttgctcagcccaaatttttccaaatatatgagctactccaaaaatgtatttagaatcagtatgaatagttccttccttgctctgtaagtgttttaaaacctggctgagtgcaaatagttcacatgctttggcagaccaactattgggcaaccttcctgactctgtttcttcaagagtttctccatcaattactgaatacccattgtatttttctcctttaattgcttgggatcaaccatctataaataagtgtcaccccattttgaaaggggtctctcttagatccggcctgacctttgtttggtagtcagttagatctagacataagtgttctctttttagatttgggtcccctgttaagaaacctctcggattgagtgaattatcagtagtcaaggttaaatcatctttttagtaaaatagcctcatattttaagattctggagtcagtgagccaccttcctgctttttttatttaaaatagctctaacttggtggggtgtgcttacagtcaatttccccccaaagattaattttctactttcttcaactaatactgctgtagctgcaatgaattggatgcactgaggctacccacaggtgactgggtctaaaatttttgataggaaggctacgggctgccggtgaccaccatgttcttgagtaagcacccctaaagctaccccgttatttacattaacaaaaagatgaaatggcttttctagggaagctaaggctaagacaggggcagttatgagtttgtatttcagctcttcaacctgattgacttcctcagaagtccacaggagacggtccagtttccactgggtaagcttttcatataaacgtttactttttagggcatatgagtcaatccataagcatcaatatccaactaatcctagaaattttctgagttattgcttagtttgaggcaagggtaaggacacgatgccttcaactcgttaaggtcctatcctttgcttacctgcacttattaagtggcctaaatatttaacttcaggctccacatactgaagctttccctttaagaaccataacccctcgaactccagatggttaaggatatgtgtagagaagccagctactttctctacatcttcaacagataggagaatatcatccatgtactggagcaggcatatttgctttgggatgacaactttttctaacacttgttctaaaatttgaccaaaaaggtttggagagtctgtaaacccttgaggtaaaactgtccatcaataatgttgttttcgccctgaatggggatcctcccactcaaaagcaaatatgtctcagctgtcttcagccaaggggcatgcgcagaaggcatcttttaaatctattactgtaaaccactgatgg-ttttttggaattttgctgagaatggtgtatgggttggggacaacaggatggttagtttggactatttgatggctctaagatcttgtaccaagtcggtatgacccatctaatttcttgactggcaatattggagtgttatacggggacatacaggattcaaggagcccatctttaataagactttcaattataggctttaatcctatcctgccctctaggggtttggggtattgtttcctccttactacttccctggggattcttaacttgatgtggattggagggattcagagtttctcccggtttccttcccttgaccagacactaggattaatgcatttttcatctgtggtggtgagtaggtttaatgaggtaaagaatcctttaggaccaacttgtaagcctgtgcctaattctagcattaagtctcttcctaatagattagtttctgcctcagggatcaacaaaaattggatatgagtcagccgatcttggtatttaacttctgtactttctaagatttttgctttaaatccttctccttttaccccagagactaaaagttcttctgaagagcaggcaatgttggatggggggaagcaaatggaggagcgagccactcctgaattgactaaaaggtgataagctcatgtttggttaccacctgtaaatttatcaagggctcctggtgggactcgagataaacagagcccctgacccccctgttcttcctcaaaagtcatgagttgaagggcttctttctccttttccagtttgggacattctcttttgaagtggcctgcccttc i panTro5.chr22 C 0 I 715 s panPan2.chr22 41093473 2367 + 50109623 taccacgcctggctaatttttttgtatttttagtagagacggggtttcaccatgttagccaggatggtcttgatctcctgacctcgtgatccgcccacctcagcctcccaaagtgctgggattacaggcatgagccactgcgcctggcctggcctttagtattaataagaccttgctcagcccaaatttttccaaatatatgagctactccaaaaatgtatttagaatcagtatgaatagttccttccttgctctgtaagtgttttaaaacctggctgagtgcaaatagttcacatgctttggcagaccaactattgggcaaccttcctgactctgtttcttcaagagtttctccatcaattactgaatacccattgtatttttctcctttaattgcttgggatcaaccatctataaataagtgtcaccccattttgaaaggggtctctcttagatccggcctgacctttgtttggtagtcagttagatctagacataagtgttctctttttagatttgggtcccctgttaagaaacctctcggattgagtgaattatcagtagtcaaggttaaatcatctttttagtaaaatagcctcatattttaagattctggagtcagtgagccaccttcctgctttttttatttaaaatagctctaacttggtggggtgtgcttacagtcaatttccccccaaagattaattttctactttcttcaactaatactgctgtagctgcaatgaattggatgcactgaggctacccacaggtgactgggtctaaaatttttgataggaaggctacgggctgccggtgaccaccatgttcttgagtaagcacccctaaagctaccccgttatttacattaacaaaaagatgaaatggcttttctagggaagctaaggctaagacaggggcagttatgagtttgtatttcagctcttcaacctgattgacttcctcagaagtccacaggagacggtccagtttccactgggtaagcttttcatataaaagtttactttttagggcatatgagtcaatccataagcatcaatgtccaactaatcctagaaattttctgagttattgcttagtttgaggcaagggtaaggacacgatgccttcaactcgttcaggtcctatcctttgcttacctgcacttattaagtggcctaaatatttaacttcaggctccacatactgaagctttccctttaagaaccataacccctcgaactccagatggttaaggatatgtgtagagaagccagctactttctctacatcttcaacagataggagaatatcatccatgtactggagcaggcatatttgctttgggatgacaactttttctaacacttgttctaaaatttgaccaaaaaggtttggagagtctgtaaacccttgaggtaaaactgtccatcaataatgttgttttcgccctgaatggggatcctcccactcaaaagcaaatatgtctcagctgtcttcagccaaggggcatgcccagaaggcatcttttaaatctattactgtaaaccactgatggtttttttggaattttgctgagaatggtatatgggttggggacaacaggatggttagtttggactatttgatggctctaagatcttgtaccaagtcggtatgacccatctaatttcttgactggcaatattggagtgttatacggggacatacaggattcaaggagcccatctttaataagactttcaattataggctttaatcctatcctgccctctaggggtttggggtattgtttcctccttactacttccctggggattcttaacttgatgtggattggagggattcagagtttctcccggtttccttcccttgaccagacactaggattaatgcatttttcatctgtggtggtgagtaggtttaatgaggtaaagaatcctttaggaccaacttgtaagcctgtgcctaattctagcattaagtctcttcctaatagattagtttctgcctcagggatcaacaaaaattggatatgagtcagccgatcttggtatttaacttctgtactttctaagatttttgctttaaatccttctccttttaccccagagactaaaagttcttctgaagagcaggcaatgttggatggggggaagcaaatggaggagcgagccactcctgaattgactaaaaggtgataagctcatgtttggttaccacctgtaaatttatcaagggctcctggtgggactcgagataaacagagcccctgacccccctgttcttcctcaaaagtcatgagttgaagggcttctttctccttttccagtttgggacattctcttttgaagtggcctgcccttc i panPan2.chr22 C 0 I 715 s gorGor5.CYUI01015375v1 3066083 2352 + 4464012 taccacgcctggctaa-ttttttgtatttttaatagagacggggtttcaccatgttagccaggatggtcttgatctcctgacctcgtgatccgcccacctcagcctcccaaagtgctgggattacaggcatgagccactgcgcctggcctggcctttagtattaataagaccttgctcagcccaaatttttccaaatatatgagctactccaaaaatgtatttagaatcagtatgaatagttccttccttgctctgtaagtgttttaaaacctggctgagtgcaaatagttcacatgctttggcagaccaactattgggcaaccttcctgactctgtttcttcaagagtttct-catcaattactgaatacccattgtgtttttctcctttaattgcttgggatcaaccatctataaataagtgtcaccccattttgaaaggggtctctcttagatccggcctgacctttgtttggtagtcagttagatctagacataagtgttctctttttagatttgggtcccctgttaagaaacctctcggattgagtgaattatcagtagtcaaggttaaatcatctttttagtaaaatagcctcatattttaagattctggagtcagtgagccaccttcctgc-ttttttatttaaaatagctctaacttggtgggatgtgcttacagtcaattt-ccctcaaagattaattttctactttcttcaactaatacttctgtagctgcaacggattggatgcactgaggcta-ccacaggtgactgggtctaaaatttttgataggaaggctacgggctgccggcgaccaccatgttcttgagtaagcacccctaaagctaccccgttatttacattaacaaaaagatgaaatggcttttctagggaaggtaaggctaagacaggggcagttatgagtttgtatttcagctcttcaacctgattgacttcctcagaagtccacaggagacggtccagtttccactgggtaagcttttcatataaaagtttactttttagggcatatgagtcaatccataagcatcaatatccaactaatcctagaaattttctgagttattgcttagtttgaggcaagggtaaggacacgatgccttcaactcgttcaggtcctatcctttgcttacctgcacttattaagtggcctaaata-ttaacttcaggctccacatactgaagcttt-cctttaagaaccataacccctcgaactccagatggttaaggatatgtgtagagaagccagctactttctctacatcttcaacagatatgagaatatcatccatgtaccggagcaggcatatttgctttgggatgacaactttttctaacacttgttctaaaatttgaccaaaaaggtttggagagtctgtaaacccttgaggtaaaactgtccatcaataatgttgttttcgccctgaatggggatcctcccactcaaaagcaaatatgtctcagctgtcttcagccaaggggcatgcccagaaggcatcttttgaatctattactgtaaaccactgatgg-ttttgtggaattttgctgagaatggtgtatgggttggggacaacaggatggttagtttggactatttgatggctctaagatcttgtaccaagtcggtatgacccatctaatttcttgactggcaatattggagtgttatacggggacatacagggttcaaggagcccatctttaataagactttcaattataggctttaatcctatcctgccctctaggggtttggggtattgtttcct-cttactacttccctgggggttcttaacttgatgtggattggagggattcagagtttctcccggtttccttcccttgaccagacactaggattaatgcatttttcatctgtgatggtgagtaggtttaatgaggtaaagaatcctttaggaccaacttgtaagcctgtgcctaattctagcattaagtctcttcctaatagattagtttctgcctcagggatcaac-aaaattggatatgagtcaaccgatcttggtatttaacttctgtactttctaagatttttgctttaaatcctt---cttttaccccagagactaaaagttcttctgaagagcaggcaatgttggatggggggaagcaaatggaggagcgagccactcctgaattgactaaaaggtgataagctcatgtttggttcccacctgtaaatttatcaagggctcctggtgggactcgagataaacagag-ccctga-ccccctgttcttcctcaaaagtcatgagttgaagggcttctttctccttttccagtttgggacattctcttttgaagtggcctgctcttc i gorGor5.CYUI01015375v1 C 0 I 711 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24635546 19787 + 33263144 I e cerAty1.NW_011999588v1 4008822 16022 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 87549970 16531 - 96509753 I e rheMac8.chr10 84204822 16499 + 92844088 I e nomLeu3.chr7b 106591684 6581 - 115148730 I a score=0.000000 s hg38.chr22_GL383582v2_alt 34905 1266 + 162811 aaacggtctggacggaccgtttatagtttctggccccctggaagctttgtttagaagcataaacgagggtctggaccttttatagtttctggccccctggaagctttgtttagaagcataaacgagggtctggaccttttatagtttctggccccctggaagctttgtttagaagcataaacgagggtctggaccttttatagtttctggccccctggaagctttgtttagaagcataaatgagggtctggaccttttatagtttctggccccctggaagctttgtttagaagcataaacgagggtctggaccttttatagtttctggccccctggaagctttgtttagaagcataaatgagggtctggaccgtctatcgtttctggccccctggaagctttgtttagaagcatgtgggtgtggggccacctgctggaaagtggataacgtgagtttttgccttttgtttttgcttctttcctcacatatattttttgagcttctcccagaagttcacttagaggttggttttcccagtcttctaatttttgtaacttttttgaaatatctggccaacttgtagtgacaaaatggagctttaacactccctgtccaaggagatcttccaaatttaggcctgcatattgtcttgtttggtcctttattcttgtctagaaatttcataggccccctcatctttttcctattgtatatcaaatgctttagagaggttttgggttcagggtactgattccctaattccctttattatcatttcccttaggtcttgcatattttcccagtgagctgcattaatatcgtcccaccgggggtcttgggtgggaaacttttgatctgcggtaggaatgtttgaccaggagggtgttcgtgttcccaaattgccatagcagccctacagatcatgcttctttcctcccctgaaaagaggacgcaggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaaaattagccgggcgcagtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgagccgagattgcgccactgcagtccgcagtcccgcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaa e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24635546 19787 + 33263144 I e cerAty1.NW_011999588v1 4008822 16022 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 87549970 16531 - 96509753 I e rheMac8.chr10 84204822 16499 + 92844088 I e nomLeu3.chr7b 106591684 6581 - 115148730 I e gorGor5.CYUI01015375v1 3068435 711 + 4464012 I e panPan2.chr22 41095840 715 + 50109623 I e panTro5.chr22 28791175 715 + 37823149 I a score=426259.000000 s hg38.chr22_GL383582v2_alt 36171 770 + 162811 gaaaagaggacgcctaggatggacattaactccacccaagtgtataactgaggtcctaagaattgatcaacctgatctgttacccaataaggtcatccaataacggcttaagttccttcttcaaacttcagacctctgaactggttaagggagcattcacaaaattaatagcccccctgtccttgtggcacctcttttaaggggaagagagttggggctgactccatagatgtggagggaaatgggaaattttggatatcttttttacattgttctacctcacgttggagtccttttagggaggggtacttaggctgagaaggaacaggctaatgggatggtgattcccaagaatcaggattgtaaggaggaggaataacatgagcaggagaaggatctggagcaggaacggggacagcagctgctacctgaggggaagggttaggggcactgagcgtgggggaagatggtttagaggatcccatgtgctggagtctttaggcatggggactggcttttctcactcttcagtttgaggtgctagattgggtttttccctagttgtctttaagggaaagaggaggacaggtccctgcctccaacaaagagcataggccaattcttcttgagaaactggacttttatcatttacatattgaattagaagttgacacatcacatccttgttcaacccaaactttgaccaaaagattgagggtttgaggatgggtccctgagtccaaataaaacagcaattgtttgtcatttgt s panTro5.chr22 28791890 770 + 37823149 gaaaagaggatgcctaggatggacattaactccacccaagtgtataagtgaggtcctaagaattgatcaacctgatctgttacccaataaggtcatccaataacggcttaagttccttcttcaaacttcagacctctgaacttgttaagggagcattcacaaaattaatagcccccctgtccttgtggcacctcttttaaggggaagagagttggggctgactccatagatgtggagggaaatgggaaattttggatatcttttttacattgttctacctcacgttggagtccttttagggaggggtacttaggctgagaaggaacaggctaatgggatggtgattcccaagaatcaggattgtaaggaggaggaataacatgagcaggagaaggatctggagcaggaacggggacagcagctgctacctgaggggaagggttaggggcactgagcatgggggaagatggtttagaggatcccatgtgctggagtctttaggcatggggactggcttttctcactcttcagtttgaggtgctagattgggtttttccctagttgtctttaagggaaagaggaggacaggtccctgcctccaacaaagagcataggccatttcttcttgagaaactggacttttatcatttacatattgaattagaagttgacacatcacatccttgttcaacccaaactttggccaaaagattgagggtttgaggatgggtccctgagtccaaataaaacagcaatagtttgtcatttgt i panTro5.chr22 I 715 C 0 s panPan2.chr22 41096555 770 + 50109623 gaaaagaggatgcctaggatggacattaactccacccaagtgtataagtgaggtcctaagaattgatcaacctgatctgttacccaataaggtcatccaataacggcttaagttccttcttcaaacttcagacctctgaacttgttaagggagcattcacaaaattaatagcccccctgcccttgtggcacctcttttaaggggaagagagttggggctgactccatagatgtggagggaaatgggaaattttggatatcttttttacattgttctacctcacgttggagtccttttagggaggggtacttaggctgagaaggaacaggctaatgggatggtgattcccaagaatcaggattgtaaggaggaggaataacatgagcaggagaaggatctggagcaggaacggggacagcagctgctacctgaggggaagggttaggggcactgagcgtgggggaagatggtttagaggatcccatgtgctggagtctttaggcatggggactggcttttctcactcttcagtttgaggtgctagattgggtttttccctagttgtctttaagggaaagaggaggacaggtccctgcctccaacaaagagcataggccatttcttcttgagaaactggacttttatcatttacatattgaattagaagttgacacatcacatccttgttcaacccaaactttggccaaaagattgagggtttgaggatgggtccctgagtccaaataaaacagcaatagtttgtcatttgt i panPan2.chr22 I 715 C 0 s gorGor5.CYUI01015375v1 3069146 767 + 4464012 gaaaagaggatgcctaggatggacattaactcgacccaagtgtataactgaggtcctaagaattgatcaacctgatctgttacccaataaggtcatccaataatggcttaagttccttcttcaaactgcagacctctgaactggttaagggagcattcacaaaactaatag-ccccctgtccttgtggcacctcttttaaggggaagagagttggggctggctccatagatgtggagggaaatgggaaattttggatatcttttttacattgttctacctcacgttggagtccttttagggaggggtacttaggctgagaaggaacaggctaatgggatggtgattcccaagaatcaggattgtaaggaggaggaataacatgagcaggagaaggatctggagcaggaacggggacagcagctgctacctga-gggaagggttaggggcactgagtgtgggggaagatggtttagaggatcccatgtgctggagtctttaggcatggggactggcttttctgactcttcagtttgaggtgctagattgggtttttccctagttgtctttaagggaaagaggaggacaggtccctgcctccaacaaagagcataggccaattcttcttgagaaactggacttttatcatttacatattgaattagaagttgacacatcacatccttgttcaacccaaactttggccaaaagattgagggtttgaggatgggtccctgagtccaaat-aaacagcaatagtttgtcatttgt i gorGor5.CYUI01015375v1 I 711 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e manLeu1.NW_012102031v1 13902704 16121 - 14338769 I e chlSab2.chr19 24635546 19787 + 33263144 I e cerAty1.NW_011999588v1 4008822 16022 - 4483953 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e macFas5.chr10 87549970 16531 - 96509753 I e rheMac8.chr10 84204822 16499 + 92844088 I e nomLeu3.chr7b 106591684 6581 - 115148730 I a score=3276.000000 s hg38.chr22_GL383582v2_alt 36941 1 + 162811 t s panTro5.chr22 28792660 1 + 37823149 t i panTro5.chr22 C 0 C 0 s panPan2.chr22 41097325 1 + 50109623 t i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3069913 1 + 4464012 t i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84221321 1 + 92844088 t i rheMac8.chr10 I 16499 C 0 s macFas5.chr10 87566501 1 - 96509753 t i macFas5.chr10 I 16531 C 0 s cerAty1.NW_011999588v1 4024844 1 - 4483953 t i cerAty1.NW_011999588v1 I 16022 C 0 s chlSab2.chr19 24655333 1 + 33263144 t i chlSab2.chr19 I 19787 C 0 s manLeu1.NW_012102031v1 13918825 1 - 14338769 t i manLeu1.NW_012102031v1 I 16121 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e macNem1.NW_012012688v1 7034313 23903 - 13098629 I e nomLeu3.chr7b 106591684 6581 - 115148730 I a score=5144158.000000 s hg38.chr22_GL383582v2_alt 36942 1321 + 162811 gctttttcttatgtttagttctctcattatctttccaatattttaacatgagacctaggggactaacagcaggaatatctttattgctgtctttatcctttttactccgtgtcctgcttggggtgtttcccatgttgggtcctagttaggctcagtccctcatattagagatttcttgcctatccttttctggaggcttgc----------tgaggctcaatccctcgtattagagatttcttgcctctccttttctggaggcttattgaggctcaattcctcatactagagatttctatcctttagccccacctgctggaggctccttgcacccttcttttgcttcgtccactctggtcgcttcccggaggggaatttaggtccctcttacctttggcacgcccatataaaccccatggcaggatctgtcctaagccatatgaggtgaccatggaacctcagataggacacactcattccgcacagcagtagtgcttagtaccattcacacaagcagcaccgcaagcagtaatgcttgtgatcattcatacacactttcaatctccagaatatcttgaccaccaaggaaatgctttgtcacccctgtgacgtttcttaccttggtctgtgcacaaagttacctggtcaccatggtgttgcaagcctttttttccccacattgctgagagtccggatttattcgtcacaccgggtgggttccgatccctcaccctgaggccaccgcaacgaggcagtgggatgcgtctccttatgagaggtgaccagagaccccttccctggaggagaatgggaatcctggatgagccccagattTGTtggagataaatgctcagtgctgcaaagtgaaaccagcactgaggcgaaagttttctcagcaaggcagtttacttctgcagaagggtgctgcttgtgtcaatcacgattgcaagagcacactgaacaaaggaaagcaggggtttttattcctaatgcaatccctccctctgtgtcactccttcatgggctgt-ggttggactgcacaatctaaactgacccgactggctatttgtgaatactttcccaaataaggaagggaagggaaatgtgagttacagtggtgggacgtgcggtttcgaagggaggaaggggtgaagagtgggtaaccaagggaacagatgtgagttattgattagaactgacaggaaggttgtttacagttacagtaactaggggcaaggaggcatagagaacaagaaagttgagtttgagaacaaagaacaaggaagttaacaggctaaacctttgaagaggaattttattgtatcctaca s panTro5.chr22 28792661 1331 + 37823149 gctttttcttctgtttagttctctcattatctttccaatattttaacatgagacctaggggactaacagcgggaatatctttattgctgtctttatcctttttactccgtgtcctgcttggggtatttcccatgttgggtcctagttaggctcagtccctcatattagagatttcttgcctatccttttctggaggcttgcggaggcttgctgaggctcagtccctcgtattagagatttcttgcctctccttttctggaggcttattgaggctcaatccctcatactagagatttctatcctttagccccacctgctggaggctccttgcacccttcttttgcttcgtccactctggttgcttcccggaggggaatttaggtccctcttagctttggcatgccagtataaaccccatggcaggatctgtcctaagccatatgaggtgaccatggaacctcagataggacacactcattccgcacagcagtagtgcttagtaccattcacacaagcagcaccgcaagcagtaatgcttgtgatcattcacacacactttcaacctccagaatatcttgaccaccaaggaaatgctttgtcacccctgtgacgtttcttaccttggtctgtgcacaaagttacctggtcaccatggtgttgcaagcctttttttccccacattgctgagagtccggatttattcatcacaccgggtgggttctgatccctcaccctgaggccaccgcaacgaggcagtgggatgcgtctccttatgagaggtgaccagagaccccttccccggaggagaatgggaatcctggatgagccccagatttGTTGGAGataaatgctcagtgctgcaaagtgaaaccagcactgaggcgaaagttttctcagcaaggcagtttacttctgcagaagggtgctgcttgtgtcaatcacgattgcaagagcacaccgaacaaaggaaagcaggggtttttattcctaacgcaatccctccctctgtgtcactccttcatggactgt-ggttggactgcacaatctaaactgacccgactggctatttgtgaatactttcccaaataaggaagggaagggaaatgtgagttacagtggtgggacgtgcagtttcgaagggaggaaggggtgaagagtgggtaaccaagggaatagatgtgagttattgattagaactgacaggaaggttgtttacagttacagtaactacggacaaggaggcatagagaacaagaaagttgagtttgagaacaaagaacaaggaagttaacaggctaaacctttgaagaggaattttattgtatcctaca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41097326 1331 + 50109623 gctttttcttctgtttagttctctcattatctttccaatattttaacatgagacctaggggactaacagcgggaatatctttattgctgtctttatcctttttactccgtgtcctgcttggggtatttcccatgttgggtcctagttaggctcagtccctcatattagagatttcttgcctatccttttctggaggcttgcggaggcttgctgaggctcagtccctcgtattagagatttcttgcctctccttttctggaggcttattgaggctcaatccctcatactagagatttctatcctttagccccacctgctggaggctccttgcacccttcttttgcttcgtccactctggttgcttcccggaggggaatttaggtccctcttagctttggcatgccagtataaaccccatggcaggatctgtcctaagccatatgaggtgaccatggaacctcagataggacacactcattccgcacagcagtagtgcttagtaccattcacacaagcagcaccgcaagcagtaatgcttgtgatcattcacacacactttcaacctccagaatatcttgaccaccaaggaaatgctttgtcacccctgtgacgtttcttaccttggtctgtgcacaaagttacctggtcaccatggtgttgcaagcctttttttccccacattgctgagagtccggatttattcatcacaccgggtgggttccgatccctcaccctgaggccaccgcaacgaggcagtgggatgcgtctccttatgagaggtgaccagagaccccttccccggaggagaatgggaatcctggatgagccccAGATTTGTTGGAGataaatgctcagtgctgcaaagtgaaaccagcactgaggcgaaagttttctcagcaaggcagtttacttctgcagaagggtgctgcttgtgtcaatcacgattgcaagagcacaccgaacaaaggaaagcaggggtttttattcctaacgcaatccctccctctgtgtcactccttcatggactgt-ggttggactgcacaatctaaactgacccgactggctatttgtgaatactttcccaaataaggaagggaagggaaatgtgagttacagtggtgggacgtgcggtttcgaagggaggaaggggtgaagagtgggtaaccaagggaatagatgtgagttattgattagaactgacaggaaggttgtttacagttacagtaactacggacaaggaggcatagagaacaagaaagttgagtttgagaacaaagaacaaggaagttaacaggctaaacctttgaagaggaattttattgtatcctaca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3069914 1310 + 4464012 gctttttcttatggttagttctctcattatctttccaatattttaacatgagacctaggggactaacagcgggaatatctttattgctgtctttatcc-ttttactccgtgtcctgcttggggtatttcccatgttgggtcctagttaggctcagtccctcatattagagatttcttgcctatccttttctggaggcttgc----------tgaggctcaatccctcgtattagagatttcttgcctctccttttctggaggcttattgaggctcaatccctcatactagagatttctatcctttagccccacctgctggaggctccttgcccccttcttttgctttgtccactctggtcgcttcccggaggggaatttaggtccctcttagcattggcatgccagtataaaccccatggcaggatctgtcctaagccatatgaggtgaccatggaacctcagataggacacactcactccgcacagcagtagtgcttagtaccattcacacaagcagcaccgcaagcagtaatgcttgtgatcattcacacacactttcaacctccagaatatcttgacca-caaggaaatgctttgtcacccctgtgacgtttcttaccttggtctgtgcacaaagtta-ctggtcaccatggtgttgcaagcctttttttccccacattgctgagagtccggatttattcgtcacaccgggtgggttccgatccctcaccctgaggccactgcaacgaggcagtgggatgcatctccttatgagaggtgaccagagaccc--ttcccggaggagtatgggaatct--gatgagccccAGATTTGTtggagataaatgctcagtgctgcaaagtgaaaccagcactgaggtgaaagttttctcagcaaggcagtttacttctgcagaagggtgctgcttgtgtcaatcacgattgcaagagcacaccgaacaaaggaaagcaggggtttttattcctaacacaatccctgcctctgtgtcactccttcatgggctgtgggttggactgcacaatctaaactgacccgactggctatttgtgaatactttcccaaataaggaagggaagggaaatgtgagttacagtggtgggacgtgcggtttcgaa-ggaggaatgggtgaagagtgggta--ccaaggaacagatgtgagttattgattagaactgacaggaaggttgtttacagttacggtaactagggacaaggaggcatagagaacaagaaagttgagtttgagaa-aaagaac-aggaagttaacaggctaaacctttgaagaggaattttattgtatcctaca i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84221322 1320 + 92844088 gctttttcttatgtttagttctctcattatctttccaatattttaacatgagacctaggggactaacagcaggaatatctttattgctatctttatcctttttactccctgtcttgcttgggatatttcccatgttgagtcctagttaggctcaatcccttgtactagagatttattgcctatccttttctggaggcttgc----------tgaggcttaatcccttgtattagagatttcttgcgtcgtcttttctggaggctttttgagactcaatccctcatactagagatttatatcctttagccccacctgctggaggttccttgcatccttcttttgcttcgtccactctggtcgcttcccggaggggaatttagatccctcttagcattggcatgtcagtataaaccccacagcaggatccgtcctaagctgtatgagatgaccatggaaccgcagataggacccactcactccacacagcagtagtacttagtaccattcacacaagcagcactgcaagcagtaatgcttgcgatcattcacacacactttcaacctccagaatatcctgaccaccaaggaaatgctttgtcaccccagtgatgtttcttaccttggtctgtgcacaaagttacctggtcactgtggtgttgcaagccttttttcccccacattgctgagagtccaggtttatttgtcacaccggctgggtcctgatccctcaccctgaggccactgcaacgaagcagtgggacacgtctctttatgagaggtgaccagagaccccttccccggaggagaatgGGAATCCCAGATAAGCCCCAGATTTGTtggagataaatgctcggtactgcaaagtgaaaccagcactcagatgaaagttttctcagcaaggcaatttacttttgcagaagggtgctgcttgtgtcaatcacgattgcaagagtacaccaaacaaaggaaagcaggga-ttttattcctaacacaatccctacctctgtgtcactcctccatgggctgg-ggttggaccgcaccatctaatatgacccgattggctatttgtgaatactttcccaaataaggaagggaagggaaatgtgagttacagtggtgggacgtgcggtttccaagggaggaatgggtgaagagcgggtagccaggggaacagatgtgagttattgattaggactgacagggatgttgtttacagttacagtacgtaggggcaatgaggcatagagaacaagaaagttgagtttgagaacaaagaacaaagaagttaacaggctaaacctttgaagaggaattttactgtatcctaca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87566502 1320 - 96509753 gctttttcttatgtttagttctctcattatctttccaatattttaacatgagacctaggggactaacagcaggaatatctttattgctatctttatcctttttactccctgtcttgcttgggatatttcccatgttgagtcctagttaggctcaatcccttgtactagagatttattgcctatccttttctggaggcttgc----------tgaggcttaatcccttgtattagagatttcttgcgtcgtcttttctggaggctttttgagactcaatccctcatactagagatttatatcctttagccccacctgctggaggttccttgcatccttcttttgcttcgtccactctggtcgcttcccggaggggaatttagatccctcttagcattggcatgtcagtataaacctcacagcaggatccgtcctaagctgtatgagatgaccatggaaccgcagataggacccactcactccacacagcagtagtacttagtaccattcacacaagcagcactgcaagcagtaatgcttgcgatcattcacacacactttcaacctccagaatatcctgaccaccaaggaaatgctttgtcaccccagtgatgtttcttaccttggtctgtgcacaaagttacctggtcactgtggtgttgcaagccttttttcccccacattgctgagagtccaggtttatttgtcacaccggctgggtcctgatccctcaccctgaggccactgcaacgaggcagtgggacacgtctctttatgagaggtgaccagagaccccttccccggaggagaatgGGAATCCCAGATAAGCCCCAGATTTGTtggagataaatgctcggtactgcaaagtgaaaccagcactcagatgaaagttttctcagcaaggcaatttacttttgcagaagggtgctgcttgtgtcaatcacgattgcaagagtacaccaaacaaaggaatgcaggga-ttttattcctaacacaatccctacctctgtgtcactcctccatgggctgg-ggttggaccgcaccatctaatatgacccgattggctatttatgaatactttcccaaataaggaagggaagggaaatgtgagttacagtggtgggacgtgcggtttccaagggaggaatgggtgaagagcgggtagccaggggaacagatgtgagttattgattaggactgacagggatgttgtttacagttacagtacgtaggggcaatgaggcatagagaacaagaaagttgagtttgagaacaaagaacaaagaagttaacaggctaaacctttgaagaggaattttactgtatcctaca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7058216 1320 - 13098629 gctttttcttatgtttagttctctcattatctttccaatattttaacatgagacctaggggactaacagcaggaatatctttattgctatctttatcctttttactccctgtcttgcttgggatatttcccatgttgagtcctagttaggctcaatcccttgtactagagatttattgcctatccttttctggaggcttgc----------tgaggcttaatcccttgtattagagatttcttgcatcgtcttttctggaggctttttgagactcaatccctcatactagagatttatatcctttagccccacctgctggaggttccttgcatccttcttttgcttcgtccactctggtcgcttcccggaggggaatttagatccctcttagcattggcatgtcagtataaaccccacagcaggatccgtcctaagctgtatgaggtgaccatggaaccgcagataggacccactcactccacacagcagtagtacttagtaccattcacacaagcagcactgcaagcagtaatgcttgcgatcattcacacacactttcaacctccagaatatcctgaccaccaaggaaatgctttgtcaccccagtgatgtttcttaccttggtctgtgcacaaagttacctggtcactgtggtgttgcaagccttttttcccccacattgctgagagtccaggtttatttgtcacaccggctgggtcctgatccctcaccctgaggccactgcaacgaggcagtgggacacgtctctttatgagaggtgaccagagaccccttccccggaggagaatgGGAATCCCAGATAAGCCCCAGATTTGTtggagataaatgctcggtactgcaaagtgaaaccagcactcagatgaaagttttctcagcaaggcaatttacttttgcagaagggtgctgcttgtgtcaatcacgattgcaagagtacaccaaacaaaggaaagcaggga-ttttattcctaacacaatccctacctctgtgtcactcctccatgggctgg-ggttggaccgcaccatctaatatgacctgattggctatttgtgaatactttcccaaataaggaagggaagggaaatgtgagttacagtggtgggacgtgcggtttccaagggaggaatgggtgaagagcgggtagccaggggaacagatgtgagttattgattaggactgacagggatgttgtttacagttacagtacgtaggggcaatgaggcatagagaacaagaaagttgagtttgagaacaaagaacaaagaagttaacaggctaaacctttgaagaggaattttactgtatcctaca i macNem1.NW_012012688v1 I 23903 C 0 s cerAty1.NW_011999588v1 4024845 1313 - 4483953 gctttttcttatgtttagttctctcattatctttccaatattttaacatgagacctaggggactaacagcaggaatatctttattgctatctttatcctttttactccctgtcttgcttgggatatttcccatgttgggtcctagttaggctcaatcccttgtactagagatttattgcctatccttttctggaggcttgc----------tgaggcttaatccct-------gagatttcttgcgtcgtcttttctggaggctttttgagactcaatccctcatactagagatttatatcctttagccccacctgctggaggctccttgcatccttcttttgcttcgtccactctggtcgcttcccggaggggaatttagatccctcttagcattggtgtgtcagtataaaccccacagcaggatccgtcctaagctgtatgagatgaccatggaaccgcagataggacccactcactccacacagcagtagtacttagtaccattcacacaagcagcaccgcaagcagtaatgcttgtgatcattcacacacactttcaacctccagaatatcctgatcaccaaggaaatgctttgtcgccccagtgatgtttcttaccttggtctgtgcacaaagttacctggtcactgtggtgttgcaagccttttttcccccacgttgctgagagtccaggtttatttgtcacaccggctgggtcctgatccctcaccctgaggccactgcaacgaggcagtgggacacgtttctttatgagaggtgaccagagaccccttccccggaggagaatgGGAATCCCAGATAAGCCCCAGATTTGTtggagataaatgctcggtactgcaaagtgaaaccagcactcagatgaaagttttctcagcaaggcaatttacttttgcagaagggtgctgcttgcgtcaatcacgattgcaagagtacaccaaacaaaggaaagcaggga-ttttattcctaatgcaatccctacctctgtgtcactcctccatgggctgg-ggttggaccgcaccatctaatatgacccgattggctatttgtgaatactttcccaaataaggaagggaagggaaatgtgagttacagtggtgggacgtgcagtttccaagggaggaatggatgaagagtgggtagccaggggaacagatgtgagttattgattaggactgacagggatgttgtttacagttatagtacgtaggggcaatgaggcatagagaacaagaaagttgagtttgagaacaaagaacaaagaagttaacaggctaaacctttgaagaggaattttactgtatcctaca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24655334 1318 + 33263144 gctttttcttacgtttagttctctcattatctttccaatattttaacatgagacctaggggactaacagcaggaatatctttattgctatctttatcctttttactccctgtcttgcttgggatatttcccatgttgggtcctagttaggctcaatctcttgtactagagatttattgcctatccttttctggaggcttgc----------tgaggcttaatcccttgtattagagatttcttgcgtcttcttttctggaggctttttgagactcaatccctcatactagagatttatatcctttagccccacctgctggaggctccttgcatccttcttttgcttcgtccactctggtcacttcccggaggggaatttagatctctcttagcattggcatgtcagtgtaaaccccacagcaggatccatcctaagctgtatgagatgaccatggaaccgcagataggacccactcactccacacagcagtagtacttagtaccattcacacaagcagcaccgcaagcagtaatgcttgtgatcattcacacacactttcaacctccagaatatcctgaccaccaaggaaatgctttgtcgccccagtgatgtttcttaccttggtctgtgcacaaagttacctggtcactgtggtgttgcaagccttttttcccccactttgctgagagtccaggtttatttgtcacactgg--gggtcccgatccctcaccctgaggccactgcaacgaggcagtgggacacgtctctttatgagaggtgaccagagaccccttccccggaggagaatgGAAATCCCAGATAAGCCCCAGATTTGTTGGAGataaatgctcggtactgcaaagtgaaaccagcactcagatgaaagttttctcagcaaggcaatttacttttgcagaagggtgctgcttgcgtcaatctcgattgcaagagtacaccaaacaaaggaaagcaggga-ttttattcctaacgcaatgcctacctctgtgtcactcctccatggactgg-ggttggaccgcaccatctaatatgacccgattggctgtttgtgaatactttcccaaataaggaagggaagggaaatgtgagttacagtggtgggacgtgtggtttccaagggaggaatgggtgaagagcgggtagccaggggaacagatgtgagttattgattaggactgacagggatgttgtttacagttacagtacgtaggggcaatgaggcatagagaacaagaaagttgagtttgagaacaaagaacaaagaagttaacaggctaaacctttgaagaggaattTTACTGTATGCTACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13918826 1313 - 14338769 gctttttcttatgtttagttctctcattatctttccaatattttaacatgagacctaggggactaacagcaggaatatctttattgctatctttatcctttttactccctgtcttgcttgggatatttcccatgttgggtcctagttaggctcaatcccttgtactagagatttattgcctatccttttctggaggcttgc----------tgaggcttaatcccttgtattggagatttcttgcgtcgtcttttctggaggctttttgagactcaatccctcatactagagatttatatcctttagccccacctgctggaggctccttgcatccttcttttgcttcgtccactctggtcgcttcccggaggggaatttagatccctcttagcattggcgtgtcagtataaaccccacagcaggatccgtcctaagctgtatgagatgaccatggaaccgcagataggacccactcactccacacagcagtagtacttagtaccattcacacaagcagcaccgcaagcagtaatgcttgtgatcattcacacacactttcaacctccagaatatcctgatcaccaaggaaatgctttgtcgccccagtgatgtttcttaccttggtctgtgcacaaagttacctggtcactgtggtgttgcaagccttttttcccccacattgctgagagtccaggtttatttgtcacaccggctgggtcctgatccctcaccctgaggccactgcaatgaggcagtgggacacgtctctttatgagaggtgaccagagaccccttccccggaggagaatgGGAATCCCAGATAAGCCCCAGATTTGTtggagacaaatgctcggtactgcaaagtgaaaccagcactcagatgaaagttttctcagcaaggcaatttacttttgcagaagggtgctgcttgcgtcaatcacgattgcaagagtacaccaaacaaaggaaagcaggga-ttttattcctaacgcaatccctacctctgtgtcactcctccatgggctgg-ggttggaccacaccatctaatatgacccgattggctatttgtgaacactttcccaaataaggaagggaagggaaatgtgagttacagtggtgggacatgcggtttccaagggaggaatgggtgaagagcgggtagccaggggaacagatgtgagttattgattaggactgacagggatgttgtttacagttacagtacgtaggggcaatgaggcatagagaacaagaaagttgagtttg-------agaacaaagaagttaacaggctaatcctttgaagaggaattttactgtatcctaca i manLeu1.NW_012102031v1 C 0 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8808302 7812 - 16357246 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e nomLeu3.chr7b 106591684 6581 - 115148730 I a score=257146.000000 s hg38.chr22_GL383582v2_alt 38263 65 + 162811 tacttgttctagtctgttgttgacactttccagtgcattttttatttctttaagtgtgtcttcca s panTro5.chr22 28793992 65 + 37823149 tacttgttctagtctgttgttgacactttccagtgcattttttatttctttaagtgtgtcttcca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41098657 65 + 50109623 tacttgttctagtctgttgttgacactttccagtgcattttttatttctttaagtgtgtcttcca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3071224 65 + 4464012 tacttgttctagtctgttgttgacactttccagtgcattttttatttctttaagtgtgtcttctg i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84222642 61 + 92844088 tacttgttctagtctgttgttgacactttccagtgcattttgta----tctctctgtgtctcccg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87567822 61 - 96509753 tacttgttctagtctgttgttgacactttccagtgcattttgta----tctctctgtgtctcccg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7059536 61 - 13098629 tacttgttctagtctgttgttgacactttccagtgcattttgta----tctctctgtgtctcccg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4026158 61 - 4483953 tacttgttctagtctgttgttgacactttccagtgcattttgta----tctaagtgtgtctcccg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24656652 63 + 33263144 tacttgttctagtctgttgttgacac--tccagtgcattttgtatctctctaagtgtgtctcccg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13920139 61 - 14338769 tacttgttctagtctgttgttgacactttccagtgcattttgta----tctaagtgtgtctcccg i manLeu1.NW_012102031v1 C 0 C 0 s saiBol1.JH378157 8816114 65 - 16357246 tacttgttctagtcaactggtaacacttcccagtgcattttgtatttctctaagtgtgtcttcca i saiBol1.JH378157 I 7812 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e nomLeu3.chr7b 106591684 6581 - 115148730 I a score=522127.000000 s hg38.chr22_GL383582v2_alt 38328 119 + 162811 tttgcagaaattgtgatttttttttctttataatatctgtttctctggagaatttttcatccatagcctgtatttttt--ttgttgt---ctttttc--tttc---tttctttctttcctttttgagac s panTro5.chr22 28794057 118 + 37823149 tttgcagaaattgtgatttttttttctttataatatctatttctctggagaatttttcatccatagcctgtatttttt-gttgttgt---ttttttc--tttc---tttcttttttt--tttttgagac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41098722 116 + 50109623 tttgcagaaattgtga-ttttttttctttataatatctatttctctggagaatttttcatccatagcctgtatttttt-gttgttgt---ttttttc--tttc---tttctttttt---tttttgagac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3071289 122 + 4464012 tttgcag-aattgtgatttttttttctttataatatctatttctctggagaatttttcatccatagcctgtatttttt-gttgttgtttcttctttc--tttc---tttcttttttttttttttgagac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106598265 114 - 115148730 tttgcagaaattgtgatttttttttctttataatatctatttctctggagaatttttcatccacagcctgtatttttt-gttgtttt---ctttttc--tttt---ttttttt------tttttgagac i nomLeu3.chr7b I 6581 C 0 s rheMac8.chr10 84222703 116 + 92844088 tttccagaaattgtga--ttttttttcttataatatctatttctctggagaatttttcatccatagcctatattttct-gtttttcg---tttcttttctctc---ttttttttt----tttttgagac i rheMac8.chr10 C 0 I 21 s macFas5.chr10 87567883 113 - 96509753 tttccagaaattgtga---tttttttcttataatatctatttctctggagaatttttcatccatagcctatattttct-gtttttcg---tttcttt--tctc---ttttttttt----tttttgagac i macFas5.chr10 C 0 I 4 s macNem1.NW_012012688v1 7059597 114 - 13098629 tttccagaaattgtga--ttttttttcttataatatctatttctctggagaatttttcatccatagcctatattttct-gtttttct---tttcttt--tctc---ttttttttt----tttttgagac i macNem1.NW_012012688v1 C 0 I 4 s cerAty1.NW_011999588v1 4026219 114 - 4483953 tttccagaaattgtga--ttttttttcttataatatctatttctctggagaatttttcatccatcgcctatattttct-gtttttct---tttattt--tctc---ttttttttt----tttttgagac i cerAty1.NW_011999588v1 C 0 I 4 s chlSab2.chr19 24656715 115 + 33263144 tttccagaaattgtga--ttttttttcttataatatctatttctctggagaatttttcatccatagcctatattttct-gtttt--t---tcttttc--tctctttttttttttt----tttttgagac i chlSab2.chr19 C 0 I 4 s manLeu1.NW_012102031v1 13920200 118 - 14338769 tttccagaaattgtga-tttttttttcttataatatctatttctctggagaatttttcatccatagcctgtattttct-gtttttct---tttcttt--tctctttttttttttt----tttttgagac i manLeu1.NW_012102031v1 C 0 I 4 s saiBol1.JH378157 8816179 120 - 16357246 tttccagaaattgtgattgttttttctttacaatacctatttctctggagaatttttcatccatagcttgtatttttttgttgttgt---ttttcgc--tttttgttttttgttt----tttttgagac i saiBol1.JH378157 C 0 I 4 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I a score=81124.000000 s hg38.chr22_GL383582v2_alt 38447 29 + 162811 tctgagcactctgttgctc-----acagtgcagt s panTro5.chr22 28794175 29 + 37823149 tctgagcactctgttgctc-----agagtgcagt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41098838 29 + 50109623 tctgagcactctgttgctc-----agagtgcagt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3071411 29 + 4464012 tctgagcactctgttgctc-----agagtgcagt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106598379 29 - 115148730 tctgagcactctgttgctc-----agagtgcagt i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87568000 17 - 96509753 tct---tactctgtctct--------------ga i macFas5.chr10 I 4 C 0 s macNem1.NW_012012688v1 7059715 26 - 13098629 tct---tactctgtcgccc-----agagtacagt i macNem1.NW_012012688v1 I 4 C 0 s cerAty1.NW_011999588v1 4026337 26 - 4483953 tct---tactctgtcgccc-----agagtgcagt i cerAty1.NW_011999588v1 I 4 C 0 s chlSab2.chr19 24656834 26 + 33263144 tct---cactctgtcgccc-----agagtgcagt i chlSab2.chr19 I 4 C 0 s manLeu1.NW_012102031v1 13920322 26 - 14338769 tct---tactctgtcgccc-----agagtgcagt i manLeu1.NW_012102031v1 I 4 C 0 s saiBol1.JH378157 8816303 31 - 16357246 tct---cactttgtcgcccagactagagtgcagt i saiBol1.JH378157 I 4 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I e rheMac8.chr10 84222819 21 + 92844088 I a score=680350.000000 s hg38.chr22_GL383582v2_alt 38476 117 + 162811 ggtgcaatctcagctcactgcaacctctggctcctgggttcacgcaatccccctgcctcagtctcccaaatagctggtattacaggcacgcaccaccatgcctggctgatttttgta s panTro5.chr22 28794204 117 + 37823149 ggtgcaatctcagctcactgcaacctctggctcctgggttcatgcaatccccctgcctcagtctcccaaatagctggtattacaggcacgcaccaccatgcctggctgatttttgta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41098867 117 + 50109623 ggtgcaatctcagctcactgcaacctctggctcctgggttcatgcaatccccctgcctcagtctcccaaatagctggtattacaggcacgcaccaccatgcctggctgatttttgta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3071440 117 + 4464012 ggtggaatctcagctcactgcaacctctggctcctgggttcacgcaatccccctgcctcagtctcccaaatagctggtattacaggcacgcaccaccatgcctggctgatttttgta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106598408 117 - 115148730 ggtgcaatctcagctcactgcaacctctggctcctgggttcaagcaatccccctgcctcaatctcccaagtagctggtattacaggcacgcaccaccatgcctggctaatttttgta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84222840 117 + 92844088 ggtgcaatctcagctcattgcaacctctggcttctgggttcaagcaatcctcctgcctcagcctcccaagtagctggtattataggcacgcaccaccatgcctggctaatttttgta i rheMac8.chr10 I 21 C 0 s macFas5.chr10 87568017 117 - 96509753 ggtgcaatctcagctcattgcaacctctggcttctgggttcaagcaatcctcctgcctcagcctcccaagtagctggtattataggcacgcaccaccatgcctggctaatttttgta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7059741 117 - 13098629 ggtgcaatctcagctcattgcaacctctggcttctgggttcaagcaatcctcctgcctcagcctcccaagtagctggtattataggcacgcaccaccatgcctggctaatttttgta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4026363 117 - 4483953 ggtgcaatctcagctcattgcaacctctggcttctgggttcaagcaatcctcctgcctcagcctcccaagtagctgatattataggcacgcaccaccatgcctggctaatttttgta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24656860 117 + 33263144 ggtgcaatctcagctcattgcaacctctggcttctgggttcaagtaatcctcctgcctcagcctcccaagtagctggtattataggcacgcaccaccatgcctggctaatttttgta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13920348 117 - 14338769 ggtgcaatctcagctcattgcaacctctggcttctgggttcaagcaatcctcctgcctcagcctcccaagtagctgatattataggcacgcaccaccatgcctggctaatttttgta i manLeu1.NW_012102031v1 C 0 C 0 s saiBol1.JH378157 8816334 117 - 16357246 ggtgcaatctcagctcactgcaatttctgctttctgggttcaagcaatcctcctgcctcagcctcccgagtagctgggattacaggcgcgtaccaccatgcctggctaatttttgta i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 848489 26499 + 1946073 I a score=800939.000000 s hg38.chr22_GL383582v2_alt 38593 127 + 162811 tttttagtagagatggggtttcactgtgttggccaggc-tggtctgaaactcctgacctcaagtgatcagcccgcctcagccttccaaagtgctgggtttacaggtgtgagccactgcgcctggccaa s panTro5.chr22 28794321 127 + 37823149 tttttagtagagatggggtttcactatgttggccaggc-tggtctcaaactcctgacctcaagtgatcagcccgcttcagccttccaaagtgctgggtttacaggtgtgagccactgcgcccggccaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41098984 127 + 50109623 tttttagtagagatggggtttcactatgttggccaggc-tggtctcaaactcctgacctcaagtgatcagcccgcttcagccttccaaagtgctgggtttacaggtgtgagccactgcgcccagccaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3071557 126 + 4464012 tttttggtagagatggggtttcactatgttggccaggc-tggtctcaaactcctgacctcaagtgatcag-ccgcctcagccttccaaagtgctgggtttacaggtgtgagccactgcgcctggccaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106598525 127 - 115148730 tttttagtagagatggggtttcactatgttggccaggc-tggtctcaaactcctgacctcaagtgatcaacctgcctcagccttccaaagtgctggctttacaggtgtgagccactgcacccggccaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84222957 126 + 92844088 tttttagtagagatggggcttcactatgttggcta-gt-tggtctcaaactcctgacctcaagtgatcagcccacctcagccttccaaagtgctgggtttacaggtatgagccactgtgcctggccaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87568134 126 - 96509753 tttttagtagagatggggcttcactatgttggcta-gt-tggtctcaaactcctgacctcaagtgatcagcccacctcagccttccaaagtgctgggtttacaggtatgagctactgtgcctggccaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7059858 126 - 13098629 tttttagtagagatggggcttcactatgttggcta-gt-tggtctcaaactcctgacctcaagtgatcagcccacctcagccttccaaagtgctgggtttacaggtatgagccactgtgcctggccaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4026480 126 - 4483953 tttttagtagagatggggcttcactatgttggcta-gc-tggtctcaaactcctgacctcaagtgataagcccacctcagccttccaaagtgctgggtttacaggtatgagccactgtgcccggccaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24656977 127 + 33263144 tttttagtagagatggggcttcactatgttggctaggc-tggtctcaaactcctgacctcaagtgatcagcccacctcagccttccaaagtgctgggtttacaggtatgagccactgtgcccggccaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13920465 126 - 14338769 tttttagtagagatggggcttcactatgttggcta-gc-tggtctcaaactcctgacctcaagtgatcagcccacctcagccttccaaagtgctgggtttacaggtatgagccactgtgcctggccaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 874988 125 + 1946073 tttttagtagagacggggtttcactgtgttagcca-gtatggtctcgatctcctgacctc--gtgatccgcccgtcttggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggccaa i colAng1.NW_012115588v1 I 26499 I 11 s saiBol1.JH378157 8816451 127 - 16357246 tttttggtagagatggggtttcactttgttgacgaggc-tggtctcaaacgcttgaccttaagtgatctgcccaccttagacttccaaagtgctgggtttacaggtgtgagccactgggcctgaccaa i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I a score=156959.000000 s hg38.chr22_GL383582v2_alt 38720 29 + 162811 tccatagcctgtattg-ttttttacatttc s panTro5.chr22 28794448 29 + 37823149 tccatagcctgtattg-ttttttaaatttc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41099111 29 + 50109623 tccatagcctgtattg-ttttttaaatttc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3071683 30 + 4464012 tccatagcctgtattgtttttttaaatttc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106598652 29 - 115148730 tccatagccaatattg-ttttttaaatttc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84223083 29 + 92844088 tccatagcctgtattg-ttttttaaatttc i rheMac8.chr10 C 0 I 6 s macFas5.chr10 87568260 29 - 96509753 tccatagcctgtattg-ttttttaaatttc i macFas5.chr10 C 0 I 6 s macNem1.NW_012012688v1 7059984 29 - 13098629 tccatagcctgtattg-ttttttaaatttc i macNem1.NW_012012688v1 C 0 I 6 s cerAty1.NW_011999588v1 4026606 29 - 4483953 tccatagcctgtattg-ttttttaaatttc i cerAty1.NW_011999588v1 C 0 I 6 s chlSab2.chr19 24657104 29 + 33263144 gccatagcctgtattg-ttttttaaatttc i chlSab2.chr19 C 0 I 6 s manLeu1.NW_012102031v1 13920591 29 - 14338769 tccgtagcctgtattg-ttttttaaatttc i manLeu1.NW_012102031v1 C 0 I 6 s saiBol1.JH378157 8816578 29 - 16357246 tccaaagcttgtatta-atttttaaatttc i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I e colAng1.NW_012115588v1 875113 11 + 1946073 I a score=3465861.000000 s hg38.chr22_GL383582v2_alt 38749 520 + 162811 ------tttgttttcacttttctctggtctctccttgagtagtttaataatcaaccatctgaattgtttatctggcaattcagagatttcttcttgatttgcattcattgctggggagccagtatggtcttttggaggtgttatagaaccttgttttgtcatattacaat----ttttctgatttcttctcacttgggtagactatttcaggggaaaaatctggaactcaggggctactgttcagattcttttgtcccacaaag----tgaccccttgatgtgatgcattctcacttcccctagggatggagcttcgtgagagccagactgtagtgattgctattgctcttctgggtccagccacccagtggggctaccaggttccaggctggtgctgaggaatgtctgcaaagagtcctgtgatgtgatccgtctttagctctcctggccatggacaccagcacctgccctggtggaggtgggaggggagtaaagtagactgtgagtgtgagagtccttgcttgtagttttgt s panTro5.chr22 28794477 520 + 37823149 ------tttgttttcacttttctctggtctctccttgagtagtttaataatcaaccatctgaattgtttatctggcaattcagagatttcttcttgatttgcattcattgctggggagccagtatcgtcttttggaggtgttatagaaccttgttttgtcatattacaat----ttttctgatttcttctcacttgggtagactatttcaggggaaaaatctggaactcaggggctactgttcagattcttttgccccacgaag----tgaccccttgatgtgatgcattctcacttcccctagggatggagcttcgtgagagccagactgtagtgattgctattgctcttctgggtccagccacccagtggggctaccaggttccaggctggtgctgaggaatgtctgcaaagagtcctgtgatgtgatccgtctttagctctcctggccatggacacaagcacctgctctggtggaggtgggaggggagtaaagtagactgtgagtgtgagagtccttgcttgtagttttgt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41099140 520 + 50109623 ------tttgttttcacttttctctggtctctccttgagtagtttaataatcaaccatctgaattgtttatctggcaattcagagatttcttcttgatttgcattcattgctggggagccagtatcgtcttttggaggtgttatagaaccttgttttgtcatattacaat----ttttctgatttcttctcacttgggtagactatttcaggggaaaaatctggaactcaggggctactgttcagattcttttgccccacgaag----tgaccccttgatgtgatgcattctcacttcccctagggatggagcttcgtgagagccagactgtagtgattgctattgctcttctgggtccagccacccagtggggctaccaggttccaggctggtgctgaggaatgtctgcaaagagtcctgtgatgtgatccgtctttagctctcctggccatggacaccagcacctgctctggtggaggtgggaggggagtaaagtagactgtgagtgtgagagtccttgcttgtagttttgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3071713 519 + 4464012 ------tttgttttcacttttttctggtctctccttgagtagtttaataatcaaccatctgaattgtttatctggcaattcagagatttcttcttgatttgcattcattgctggggagccagtatagtcttttggaggtgttacagaaccttgttttgtcatattacaat----ttttctgatttcttctcacttgggtagactatttcaggggaaaaatctggaactcaggggctactgttcagattcttttgtcccacaaag----tgaccccttgatgtgatgcattctcacttcccctagggatggaggttcgtgagagccagactgaagtgattgctattgctcttctgggt-cagccacccagtggggctaccaggttccaggctggtgctaaggaatgtctgcaaagagtcctgtgatgtgatccgtctttagctctcctggccatggacaccagcacctgctctggtggaggtgggaggggagtaaagtagactgtgagtgtgagagtccttgcttgtagttttgt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106598681 516 - 115148730 ------tttgttttcacttttctctggtctctccttgagtagtttaataatcaaccgtctgaattgtttatctggcaattcagagatttcttcttgatttggattcattgctggggagccagtatggtcttttggaggtgttatagaaccttgttttgtcatattacaat----ttttctgatttcttctcacttgggtagac----tcaggggaaaattctggaactcaggggctactgttcagattcttttgtcccacaaag----tgaccccttgatgtgatgaattcttacttcccctagggatggagcttcctgagagccagactgcagtgattgctattgctcttctgggtccatccaccaagtggggctaccaggttccaggctggtgctgaggaatgtctgcaaagagtcctgtgatgtgatccgtctttagctctcctggccatggataccagcacctgctctggtggaggtgggaagggagtaaagtagactgtgagtgtgagagtccttgcttgtagttttgt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84223118 519 + 92844088 ------tttgttttcacttttctctggtatctccttgagcagtttaataatcaaccatctgaattgtttatctggcaattcagagatgtcttcttgattt-cattcatttctggggagctagtgtggtcttttgggggtattagagaaccttgttttgtcatattacaag----ttttctgatttcttctcacttgggtagactatttcaggggagaaatctggaactcaggggctactgttcaggttcttttgccccacagag----tgaccccttggtgtgatgggttcccacttcctctagggatggagcttcctgggagccagactgcagtgattgctattgctcttctgggtccagccacccagtggggctaccaggttccaggctagtgctaaggaatgtccgcaaagagtcctgtgatgtgatccgtctttaggtctcccagcgatggataccagcacctgctctggtggaggtgggaggggagtaaagtagactgtgagtgtgagagtccttgcttgtagttttgt i rheMac8.chr10 I 6 C 0 s macFas5.chr10 87568295 519 - 96509753 ------tttgttttcacttttctctggtatctccttgagcagtttaataatcaaccatctgaattgtttatctggcaattcagagatgtcttcttgattt-cattcatttctggggagctagtgtggtcttttgggggtattagagaaccttgttttgtcatattacaag----ttttctgatttcttctcacttgggtagactatttcaggggagaaatctggaactcaggggctactgttcaggttcttttgccccacagag----tgaccccttggtgtgatgggttcccacttcctctattgatggagcttcctgggagccagactgcagtgattgctattgctcttctgggtccagccacccagtggggctaccaggttccaggctagtgctaaggaatgtccgcaaagagtcctgtgatgtgatccgtctttaggtctcccagcgatggataccagcacctgctctggtggaggtgggaggggagtaaagtagactgtgagtgtgagagtccttgcttgtagttttgt i macFas5.chr10 I 6 C 0 s macNem1.NW_012012688v1 7060019 519 - 13098629 ------tttgttttcacttttctctggtatctccttgagcagtttaataatcaaccatctgaattgtttatctggcaattcagagatgtcttcttgattt-cattcatttctggggagctagtgtggtcttttgggggtattatagaaccttgttttgtcatattacaag----ttttctgatttcttctcacttgggtagactatttcaggggagaaatctggaactcaggggctactgttcaggttcttttgccccacagag----tgaccccttggtgtgatgggttcccacttcctctagggatggagcttcctgggagccagactgcagtgattgctattgctcttctgggtccagccacccagtggggctaccaggttccaggctagtgctaaggaatgtccgcaaagagtcctgtgatgtgatccgtctttaggtctcccagcgatggataccagcacctgctctggtggaggtgggaggggagtaaagtagactgtgagtgtgagagtccttgcttgtagttttgt i macNem1.NW_012012688v1 I 6 C 0 s cerAty1.NW_011999588v1 4026641 523 - 4483953 ------tttgttttcacttttctctggtatctccttgagtagtttaataatcaaccatctgaattgtttatctggcaattcagagatgtcttcttgattt-cattcatttctggggagctagtgtggtcttttgggggtattatagaaccttgttttgtcatattacaag----ttttctgatttcttctcacttgggtagactatttcaggggagaaatctggaactcaggggctactgttcagattcttttgccccacagagtgactgaccccttggtgtgatgggttcccacttcccctagggatggagcttcctgagagccagactgcagtgattgctattgctcttctgggtccagccacccagtggggctaccaggttccaggctagtgctaaggaatgtctgcaaagcgtcctgtgatgtgatccgtctttaggtctcccagccatggataccagcacctgctctggtggaggtgggaggggagtaaagtagactgtgagtgtgagagtccttgcttgtagttttgt i cerAty1.NW_011999588v1 I 6 C 0 s chlSab2.chr19 24657139 519 + 33263144 ------tttgttttcacttttctctggtatctccttgagtagtttaataatcaaccatctgaattgtttatctggccattcagagatgtcttcttgattt-cattcatttctggggagctagtgtggtcttttgggggtgttatagaaccttgttttgtcatattacaag----ttttctgatttcttctcacttgggtagactatttcaggggagaaatctggaactcaggggctactgttcagattcttttgccccacagag----tgaccccttggtgtgatgggttcccacttcccctagggatggagcttcctgggagccagactgcagtgattgctattgctcttctgggtccagccacccagtggggctaccaggttccaggctagtgctaaggaatgtctgcaaagagtcctgtgatgtgatccgtctttaggtctcccagccatggataccagcacctgctctggtggaggtgggaggggagtaaagtagactgtgagtgtgagagtccttgcttgtagttttgt i chlSab2.chr19 I 6 C 0 s manLeu1.NW_012102031v1 13920626 519 - 14338769 ------tttgttttcacttttctctggtatctccttgagtagttcaataatcaaccatctgaattgtttatctggcaattcagagatgtcttcttgattt-cattcatttctggggagctagtgtggtcttttgggggtattatagaaccttgttttgtgatattacaag----ttttctgatttcttctcacttgggtagactatttcaggggagaaatctggaactcaggggctactgttcagattcttttgccccacagag----tgaccccttggtgtgatgggttcccacttcccctagggatggagcttcctgggaaccagactgcagtgattgctattgctcttctgggtccagccacccagtggggctaccaggttccaggctagtgctaaggaatgtctgcaaagcgtcctgtgatgtgatccgtctttaggtctcccagccatggataccagcacctgctctggtggaggtgggaggggagtaaagtagactgtgagtgtgagagtccttgcttgtagttttgt i manLeu1.NW_012102031v1 I 6 C 0 s colAng1.NW_012115588v1 875124 519 + 1946073 ------tttgttttcacttttctctggtatctccttgagtagtttaataatcaaccatctgaattgtttatctggcaattcagagatgtcttcttgattt-cattcatttctggggagctagtgtggtcttttgggggtgttatagaaccttgttttgtcatattacaag----ttttctgatttcttctcacttgggtagactatttcaggggagaaatctggaactcaggggctactgttcagattcttttgccccacagag----tgaccccttggtgtgatgggttcccacttcccctagggctggagcttcctgggagccagaccgcagtgattgctattgctcttctgggtccagccacccagtggggctaccaggttccagactagtgctaaggaatgtctgcaaagagtcctgtgatgtgatccgtctttaggtctcccagccatggataccagcacctgctctggtggaggtgggaggggagtaaagtagactgtgagtgtgagagtccttgcttgtagttttgt i colAng1.NW_012115588v1 I 11 C 0 s saiBol1.JH378157 8816607 502 - 16357246 tttatgttagttttcacctttctctggtatctccttgagcagtttaataatctaccttctgaattctttatctggcaattcagagatttattcttgatttggatttattgctggggagctagtatggtcttttgggggtgttatagaaccttgttttatcatattacaaattgcttttgtgat---ttctcatttgtgtagactatttcaggggaaaaatctggaactcaagggctgctgttcagattcttttgtcccacagag----tgactccttcatgtgatgggctcccccatcccctaggaatggaacttcccgggagccagactgcagtgattgccattgctcttctgggtccagccactcagtggggctaccaggttccaggccagtgctggggaatgtctgcaaagagtcctgtgatatgatccatctt-------------------------cacctgctctgctggaggtgggaggggagtaaagtagactgtgagtgtgagggtccttgcttgtagttttgt i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1891116 15260 - 2117846 I a score=4382358.000000 s hg38.chr22_GL383582v2_alt 39269 567 + 162811 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgaaagcagtggaattagc---tg-tttctcatttcttggagcagggttattctgttgtgagttgctgtaatgtcctgacttggttggcctccagccaggaggtggcgctttcaagagaacaccagctgcaatactggaagggggatataagcttgccctaagttggccagg-ataagt-attaggatttctcaggtgatggacagggccataaagctcccaagagtttatggcttttgtgatcagctaccagggcggg-tagagaaatactgtcaggttggggcagggttaggtgagtctgagctcagact-ctttctgggAA----tctgttactgatttgtaatttttaattccacagtgtttgaaggacatacttgaaataaatttaaaatccattgagatttgtttcgtggtccagaatatggcctatcttggtgaatgtttcatgtgtatgtgaaaCTGAGGCATCCATCCCTCAGTTTCAACCA s panTro5.chr22 28794997 567 + 37823149 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgaaagcaggggaattagc---tg-tttctcatttcttggagcagggttattctgttgtgagttgctgtaatgtcctgacttggttggcctccagccaggaggtggcgctttcaagagaacaccagctgcaatactggaagggggatataagcttgccctaagttggccagg-ataagt-attaggatttctcaggtgatggacagggccataaagctcccaagagtttatggcttttgtgatcagctaccagggcgag-tagagaaatactgtcaggttggggcagggttaggtgagtctgagctcagact-ctTTCCAGGAA----tctgttactgatttctaatttttaattccacagtgtttgaaggacatacctgaaataaatttaaaatccattgagatttgtttcgtggtccagaatatggcctatcttggtgaatgtttcatgtgtatgtgaaaCTGAGGCATCCATCCTTCAGTTTCAACCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41099660 567 + 50109623 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgaaagcaggggaattagc---tg-tttctcacttcttggagcagggttattctgttgtgagttgctgtaatgtcctgacttggttggcctccagccaggaggtggcgctttcaagagaacaccagctgcaatactggaagggggatataagcttgccctaagttggccagg-ataagt-attaggatttctcaggtgatggacagggccataaagctcccaagagtttatggcttttgtgatcagctaccagggcgag-tagagaaatactgtcaggttggggcagggttaggtgagtctgagctcagact-ctTTCCAGGAA----tctgttactgatttctaatttttaattccacagtgtttgaaggacatacctgaaataaatttaaaatccattgagatttgtttcgtggtccagaatatggcctgtcttggtgaatgtttcatgtgtatgtgaaaCTGAGACATCCATCCTTCAGTTTCAACCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3072232 567 + 4464012 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgaaagcagtggaattagctgttg-tttctcatttcttggagcagggttattctgttgtgagttgctgtaatgtcctgacttggttggcctccagccaggaggtggcgctttcaagagaacaccagctgcaatactggaaggggaatataagcttgccctaagttggccagg-ataagt-attaggatttctcaggtgatggacagggccataaagctcc--aaggtttatggcttttgtgatcagctaccagggcgggttagagaaatactgtcaggttggggcaggattaggtgagtctgagctcagact-ctTTCCAGGAA----tctgttactgatttctag-ttttaattccacagtgtttgaaggacatacttgaaataaatttaaaatccattgagatttgtttcgtggtccagaatatggcctatcttggtgaatg-ttcatgtgtatgtgaaaCTGAGGCATCCATCCCTCAGTTTCAACCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106599197 574 - 115148730 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgcaggcagtggaattagctgttg-tttctcatttcttggagcagggttattatgttgtgagttgctgtaatgtcctgacttggttggcctccagccaggaggtgacgctttcaagagaacaccagctgcaatactggaagggggatataagcttgccctaagttggccagg-ataagt-attaggatttctcaggtgatggacagggccataaagctcccaagagtttatggcttttgtgatcagctaccagggtggg-tagagaaataccatcaggttggggcagggttaggtgagtctgagctcagatt-ctttccaggaatctttctgttactgatttctaatttttaattccacagtggttgaaggacatacttgagataaatttaaaatccattgagatttgttttgtggtccagaatatggcctatcttggtgaatgtttcatgtgtatgtgaaaCTGAGGCATCCATCCCTCAGTTTCAACCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84223637 575 + 92844088 ttactgtactggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgcagacagtggaattagctgttgttttcgccttccttggggcagggttattctgttgtgagttgatgtaatgtcctgacttggttgacttccagccaggaggtggcgctttcaagagaacaccagctgcaatactaggagggggatataagcttgccctaagttggtcagg-ataagt-attaggatttctcaggtggtggacagggccataaagctctcaagagtttatggcttttgtgatcagctaccagggtggg-tagggaaataccgtcaggttggggcagggttaggtgagtctgagctcatact-ttttccaggaatctttctgttactgatttctaatttttaattccacagtggttgaaggacatacttgaaataaatttaaaatctattgagatttgttctgtggtccagaatatggcctatcttggtgaatgtttcatgtgtatgtgaaaCTGAGGCATCTATCCCTCAGTTTCAACCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87568814 575 - 96509753 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgcagacagtggaattagctgttgttttcgccttccttggggcagggttattctgttgtgagttgatgtaatgtcctgacttggttgacttccagccaggaggtggcgctttcaagagaacaccagctgcaatactaggagggggatataagcttgccctaagttggtcagg-ataagt-attaggatttctcaggtggtggacagggccataaagctctcaagagtttatggcttttgtgatcagctaccagggtggg-tagagaaataccgtcaggttggggcagggttaggtgagtctgagctcatact-ttttccaggaatctttctgttactgatttctaatttttaattccacagtggttgaaggacatacttgaaataaatttaaaatctattgagatttgttctgtggtccagaatatggcctatcttggtgaatgtttcatgtgtatgtgaaaCTGAGGCATCTATCCCTCAGTTTCAACCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7060538 575 - 13098629 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcatgtggacagactcaggagctctggttagccaggatgttgcagacagtggaattagctgttgtttttgccttccttggggcagggttattctgttgtgagttgatgtaatgtcctgacttggttgacttccagccaggaggtggcgctttcaagagaacaccagctgcaatactaggagggggatataagcttgccctaagttggtcagg-ataagt-attgggatttctcaggtggtggacagggccataaagctctcaagagtttatggcttttgtgatcagctaccagggtggg-tagagaaataccgtcaggttggggcagggttaggtgagtctgagctcatact-ttttccaggaatctttctgttactgatttctaatttttaattccacagtggttgaaggacatacttgaaataaatttaaaatctattgagatttgttctgtggtccagaatatggcctatcttggtgaatgtttcatgtgtatgtgaaaCTGAGGCATCTGTCCCTCAGTTTCAACCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4027164 575 - 4483953 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgcagacagtggaattagctgttgttttcgctttccttggggcagggttattctgttgtgagttgatgtaatgtcctgacttggttgacctccagccaggaggtgccgctttcaagagaacaccagctgcaatactaggagggggatataagcttgccctaagttggccagg-ataagt-attaggatttctcaggtgatggacagggccataaagctctcaagagtttatggcttttgtgatcagctaccagggtggg-tagagaaataccgtcaggttggggcagggttaggtgagtctgagctcagact-ttttccaggaatctttctgttactgatttctaatttttaattccacagtggttgaaggacatacttgaaataaatttaaaatctattgagatttgttctgtggtccagaatatggcctatcttggtgaatgtttcatgtgtatgtgaaaCTGAGGCATCCATCCCTCAGTTTCAACCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24657658 575 + 33263144 ttactgtgctggctttcccaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccagggtgttgcagacagtggaattagctgttgttttcgctttccttggggcagggttattctgttgtgagttgatgtaatgtcctgacttggttgacctccagccaggaggtggtgctttcaagagaacaccagctgcaatactaagagggggatataagcttgccctaagttggccagg-ataagt-attaggatttctcaggtgatggacagggccataaagctctcaagagtttatggcttttgtgatcagctaccagggcggg-tagagaaataccgtcaggttggggcagggttaggtgagtctgagctcagact-ttttccaggaatctttctgttactgatttctaatttttaattcaacagtggttgaaggacatacctgaaataaatttaaaatctattgagatttgttctgtggtccagaatatggcctatcttggtgaatgtttcgtgtgtatgtgaaaCTGAGGCATCCATCCCTCAGTTTCAACCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13921145 575 - 14338769 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgcagacagtggaattagctgttgttttcgctttccttggggcagggttattctgttgtgagttgatgtaatgtcctgacttggttgacctccagccaggaggtggcgctttcaagagaacaccagctgcaatactaggagggggatataagcttgccctaagttggccagg-ataagt-attaggatttctcaggtgatggacagggccataaagctctcaagagtttatggcttttgtgatcagctaccagagtggg-tagagaaataccgtcaggttggggcagggttaggtgagtctgagctcagact-ttttccaggaatctttctgttactgatttctaatttttagttccacagtggttgaaggacatacttgaaataaatttaaaatctattgagatttgttctgtggtccagaatatggcctatcttggtgaatgtttcatgtgtatgtgaaaCTGAGGCATCCATCCCTCAGTTTCAACCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 875643 575 + 1946073 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagttctggttagccaggatgttgcaggcagtggaattagctgttgttttcgccttccctggggcagggttattctgctgtgagttgatgtaatgtcctgacttggttgacctccagccaggaggtggcgctttcaagagaacaccagctgcaatactagaagggggatataagcttgccctaagttggccagg-ataaat-attaggatttctcaggtgatggacagggccataaagctctcaagagtttatggcttttgtgatcagctaccagggcggg-tagagaaataccgtcaggttggggcagggttaggtgtgtctgagctcagact-ttttccaggaatctttctgttactgatttctaatttttaattccacagtggttgaaggacatacttgaaataaatttaaaatctattgagatttgttctgtggtccagaatatggcctatcttggtgaatgtttcatgtgtttgtgaaaCTGAGGCATCCATCCCTTAGTTTCAACCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1906376 569 - 2117846 ttagtgtgctggc-ttctcaaatgctggttgtgctagcagtgaagttgtcacttggacagactcaggacctctggtttgccagggtgttgcaggcagtggaattagctgttatattcttcttccttggaacagggttattctgttgtgagttgctataattccctgactcggttgacctccagccaggtggtggtgctttcaagagagcaccagctgcaatccgagaagggggatataagcttgccctgagttggccagg-ataagtaattaaggtttttcaggtgat------ggccataaagctcccaagagtttatggcttttg-gatcagttaccaggaccgg-tagagaaataccgtcaggtgggggcagggttaggcgagtctgagttcagactcCtttccaggaatcttttggttactgatttctaatttttaatgccacagtggttgaaggacatacttgaaataaatttaaaatctattgagatttgttttgtggtccagaacctggcctatcttggtgaatgttttatgtgtatatgaaaCTGAGGCATCCATTCCTCAGTTTCAACCA i calJac3.chrUn_GL286373 I 15260 C 0 s saiBol1.JH378157 8817109 564 - 16357246 ttagtgtgctggctttttcaaatgctggttgtgctagcagtgaagttgtcacgtggacagactcaggacctctggttagccagggtgttgcaggctgtggaattagctgttgta---ttcttccttggagcagggttattctgttgtgagttgctataatttcctgacttggttgacctccagccagaaggtggtgcttt---gagagcaccagctgcaatctgagaagggggatctaagcttgccccaagttggccaggaataagt-attcaggtttctcaggtgat------ggccataaagctcccaagagtttatggcttttg-gatcagttaccagaaccgg-tagagaaataccgtcaggtgggggccaggttaggtgagtctgagttcagactcctttccaggaatctttctgttactgatttctaatttttaatgccacagtggttgaaggacatacttgaaataaatttaaaagatactgagatttgttttgtggtccagaatctggcctatcttggtgaatgttttatgtgtatgtgaaaCTGAGGCATCCATCCCTCAGTTTCAACCA i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46049776 11675 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I a score=1769290.000000 s hg38.chr22_GL383582v2_alt 39836 218 + 162811 CCCATAGA-TTTGTA---ATTATT-----GTTACATTTACAGAAATTTGCAGGAAGGTAGAAGTTATTGTCTTGAACCATAAAATGTCTGTTTGAAGTctttgagctcctcaagggtaggctgtatgtcctgtttacctttgatcctct-cagcataatgcttggaccaaaatggaagctcagcagacactggt----tgaatgaatga----atAGATGACATTC---AATTGTTAGG s panTro5.chr22 28795564 218 + 37823149 CCCATAGA-TTTGTA---ATTATT-----GTTACATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAAAtgtctgtttgaagtctttgagctcctcaagggtaggctgtatgtcctgtttacctttgatcctct-cagcataatgcttggaccaaaatggaagctcagcagacactggt----tgaatgaatga----atAGATGACATTC---AATTGTTAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41100227 218 + 50109623 CCCATAGA-TTTGTA---ATTATT-----GTTACATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAAAtgtctgtttgaagtctttgagctcctcaagggtaggctgtatgtcctgtttacctttgatcctct-cagcataatgcttggaccaaaatggaagctcagcagacactggt----tgaatgaatga----atAGATGACATTC---AATTGTTAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3072799 219 + 4464012 CCCATAGATTTTGTA---ATTATT-----GTTACATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAAAtgtctgtttgaagtctttgagctcctcaagggtaggctgtatgtcctgtttacctttgatcctct-cagcataatgcttggaccaaaatggaagctcagcagacactggt----tgaatgaatga----atAGATGACATTC---AATTGTTAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106599771 218 - 115148730 CCCATAGA-TTTGTA---ATTATT-----GTTACATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAGAtgtctgtttgaagtcttcgagctcctcaagggtaggctgtatgtcctgtttacctttgatcctct-cagcataatgcttggaccaaaatggaagctcagcagacactggt----tgaatgaatga----atAGATGACATAC---AATTGTTAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84224212 218 + 92844088 CCTGTAGA-TTTGTA---ATTATT-----GTTCCATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAGAtgtctgtttgaagtcttcaagttcctcagtggtaggctctatatcctgtttacctttgactctct-cagcatagtgcttggaccaaaatggaagctcagcggacactggt----tgaatgaatga----atAGATGACATTC---AATTGTTAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87569389 218 - 96509753 CCTGTAGA-TTTGTA---ATTATT-----GTTCCATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAGATGTCTGTTTGAagtcttcaagttcctcagtggtaggctctatatcctgtttacctttgactctct-cagcatagtgcttggaccaaaatggaagctcagcggacactggt----tgaatgaatga----atAGATGACATTC---AATTGTTAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7061113 218 - 13098629 CCTGTAGA-TTTGTA---ATTATT-----GTTCCATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAGATGTCTGTTTGAagtcttcaagttcctcagtggtaggctctatatcctgtttacctttgactctct-cagcatagtgcttggaccaaaatggaagctcagcggacactggt----tgaatgaatga----atAGATGACATTC---AATTGTTAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4027739 218 - 4483953 CCTGTAGA-TTTGTA---ATTATT-----GTTCCATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAGATGTCTGTTTGAagtcttcgagttcctcagtggtaggctctatatcctgtttacctttgactgtct-cagcatagtgcttggaccaaaatggaagctcagcggacagtggt----tgaatgaatga----atAGATGACATTC---AATTGTTAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24658233 218 + 33263144 CCTGTAGA-TTTGTA---ATTATT-----GTTCCATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAGATGTCTGTTTGAagtcttcgagttcctcagtggtaggctctatatcctgtttacctttgactctct-cagcatagtgcttggaccaaaatggaagctcagcggacactggt----tgaatgaatga----atAGATGACATTC---AATTGTTAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13921720 218 - 14338769 CCTGTAGA-TTTGTA---ATTATT-----GTTCCATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAGATGTCTGTTTGAagtcttcgagttcctcagtggtaggctctatatcctgtttacctttgactgtct-cagcatagtgcttggaccaaaatggaagctcagcggacagtggt----tgaatgaatga----atAGATGACATTC---AGTTGTTAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 876218 218 + 1946073 CCTGTAGA-TTTGTA---ATTATT-----GTTTCATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAGAtgtctgtttgaagtctttgagttcctcaatggtaggctctatgtcctgtttacctttgaccctct-cagcatagtgcttggaccaaaatggaagctcagcagatactggt----tgaatgaatga----atAGATGACATTC---AGTTGTTAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1906945 215 - 2117846 CCCATAGA-TTTGTA---ATTATT-----GTTTCATTTACAGAAATTTGGAGGAAGGTAGAAGTTACTGTCTTGAAccataagacgtc----tgaagtcttcgag---gtcaaggggaagctctatgttttgttgaccttcgattctct-cagcataatgcttggtccaaaatggaagctcagcagacactggt----tgaatgaatggatTGATGGATGACATTT---AGTTGTTAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8817673 229 - 16357246 CCCATAGA-TTTGTAATTATTATT-----GTTATATTTACAGAAATTTGGAGGAAGGTAGAAGTTACTGTCTTGAACCATAAGATGTCTGTTTGAAGTCTTCAGgctcctcaagggtaagctctatgttttgttaaccttttatcatct-cagcatagtgcttggtccaaaatggaagctcagcagacactggttgaatgaatgaatgaatggatggatgaTATGT---AGTTGTTAGG i saiBol1.JH378157 C 0 C 0 s canFam3.chr10 46061451 222 - 69331447 ccCATAGT-TTTGTA---ATTATTCTTTAGTTACATGCAGAGTAATTTG-AGGACAGTAAAGTCTATTGTCTTGAATCTGGCAATGTCTATTTGATGTCTTCACgcctcttaaaggcagactctatatcctgtttgtctttctctccccatagcatttttcctgaccccaaatggaagctcagcagacactggt----tcaatgg--------atggatGACACTCAGAAATAGTTAGG i canFam3.chr10 I 11675 I 726 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I a score=2610688.000000 s hg38.chr22_GL383582v2_alt 40054 357 + 162811 CTGTGTTCTTGTTTTGGATTTAGAAAATATGCTTATTGTGTTATGCAGTAAGACTGAGTCTTggctgggtgcagt---ggcttacgcctgtaatctcaatac--tttgggaggccgaggcgggtggatcacttgacgccaggagtttgagaccagcctggccaacatgacaagaccctgtctttactaaaaatacaaaaaaattagctgggcatggtgatgcacacctgtaatcccagccactcggtagcctgaggcatgagaatctcttgaacctgagaggtggaggttgcagtgagccatgatcatgccactgcactccagcctgggcaacagatcaagactcagtcttaaagacaaaaa s panTro5.chr22 28795782 357 + 37823149 CTGTGTTCTTGTTTTGGATTTAGAAAATATGCTTATTGTGTTATGCAATAAGACTGAGTCTTggctgggtgcagt---ggcttacgcctgtaatctcaatac--tttgggaggccgaggcgggtggatcacttgaggccaggagtttgagaccagcctggccaacatgacaagaccctgtctttactaaaaatacaaaaaaattagctgggcatggtgatgcacacctgtaatcccagccactcggtagcctgaggcatgagaatctcttgaacctgagaggtggaggttgcagtgagccacgatcatgccactgcactccagcctgggcaacagatcaagactcagtcttaaagacaaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41100445 357 + 50109623 CTGTGTTCTTGTTTTGGATTTAGAAAATATGCTTATTGTGTTATGCAATAAGACTGAGTCTTggctgggtgcagt---ggcttacgcctgtaatctcaatac--tttgggaggccgaggcgggtggatcacttgaggccaggagtttgagaccagcctggccaacatgacaagaccctgtctttactaaaaatacaaaaaaattagctgggcatggtgatgcacacctgtaatcccagccactcggtagcctgaggcatgagaatctcttgaacctgagaggtggaggttgcagtgagccacgatcatgccactgcactccagcctgggcaacagatcaagactcagtcttaaagacaaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3073018 354 + 4464012 CTGTGTTCTTGTTTTGGATTTAGAAAATATGCTTATTGTGTTATGCAATAAGACTGAGTCTTggctgggtgcagt---ggcttacgcctgtaatctcaatac--tttgggaggccaaggtgggtggatcacttgaggccaggaatttgagaccagcctggccaacatgacaagaccctgtctttactaaaaatacaaaaaaattagct-tgcatggtaatgcacacctgtaatcccagccactctgtagcctgaggcatgagactctcttgaa-ctgaga-gtggaggttgcagtgagccacgatcatgccactgcactgcagcctgggcaacagatcaagactcagtcttaaagacaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106599989 356 - 115148730 CTATGTTCTTGTTTTGGATTTAGAAAATATGCGTATTGTGTTATGCAACAAGACTGAGTCTTggctgggtgcagt---ggcttacgcctgtaatctcaatac--ttcgggaggccgaggtgggtggatcactcgaggccaggagtttgagaccagcctggccaacatgacaagaccctgtcttta-taaaaatacaaaacaactagctgggcatggtgacgcacacctgtaatcccagccactcggtagcctgaggcatgagaatctcttgaacccgagaggtggaggttgcagtgagccatgatcatgccactgcactccagcctgggcaacagctcaagactcagtcttaaagaaaaaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84224430 360 + 92844088 CGGTGTTCTTGTTTTTGATTTAGAAAATATGCTTATTGTATTATGCAGTGAGACTGAGTCTTggctgggtgcagtggcggcttatgcctgtaatctcaatac--tttgggaggccgaggcaggtagatcacttgaggccaggagtttgagaccagcctggccaatgtgacaagaccctgtctctactaaaaatacaaaaaaattagctgggcatggtgatgcacacctgtaatcccagctacttggtaacctgaggcatgagaatctcttgaacccgagaggcagaggttgcagtgagccacaatcatgccgctgtactccagcctgggctacagatcaagactcagtcttaaaggaagaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87569607 360 - 96509753 CGGTGTTCTTGTTTTTGATTTAGAAAATATGCTTATTGTATTATGCAGTGAGACTGAGTCTTggctgggtgcagtggcggcttatgcctgtaatctcaatac--tttgggaggccgaggcaggtagatcacttgaggccaggagtttgagaccagcctggccaatgtgacaagaccctgtctctactaaaaatacaaaaaaattagctgggcatggtgatgcacacctgtaatcccagctacttggtaacctgaggcatgagaatctcttgaacccgagaggcagaggttgcagtgagccacaatcatgccgctgtactccagcctgggctacagatcaagactcagtcttaaaggaagaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7061331 360 - 13098629 CGGTGTTCTTGTTTTTGATTTAGAAAATATGCTTATTGTATTATGCAGTGAGACTGAGTCTTggctgggtgcagtggcggcttatgcctgtaatctcaatac--tttgggaggccgaggcaggtagatcacttgaggccaggagtttgagaccagcctggccaatgtgacaagaccctgtctctactaaaaatacaaaaaaattagctgggcatggtgatgcacacctgtaatcccagctacttggtaacctgaggcatgagaatctcttgaacccgagaggcagaggttgcagtgagccacaatcatgccgctgtactccagcctgggctacagatcaagactcagtcttaaaggaagaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4027957 360 - 4483953 CGGTGTTCTTGTTTTTGATTTAGAAAATATGCTTATTGTATTATGCAGTGAGACTGAGTCTTggctgggtgcagtggcggcttatgcctgtaatctcaatac--tttgggaggccgaggcaggtagatcacttgaggccaggagtttgagaccagcctggccaacgtgacaagaccctgtctctactaaaaatacagaaaaattagctgggcatggtgatgcacatctgtaatcccagctacttggtaacctgaggcatgagaatctcttgaacccgagaggcagaggttgcagtgagccacgatcatgccgctgtactccagcctgggctacagatcaagactcagtcttaaaggaagaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24658451 360 + 33263144 CAGTGTTCTTGTTTTTGATTTAGAAAATATGCTTATTGTATTATGCAGTGAGACTGAGTCTTggctgggtgcagtggcggcttatgcctgtaatctcaatac--tttgggaggccgaggcaggtagatcacttgaggccaggagtttgaaaccagcctggccaacgtgacaagaccctgtctctactaaaaatacaaaaaaactagctggacatggtgatgcacacctgtaatcccagctacttggtaacctgaggcatgagaatctcttgaacccgagaggcagaggttgcagtgagccacgatcatgccgctgtactccagcctgggctacagatcaagactcagtcttaaaggaagaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13921938 360 - 14338769 CGGTGTTCTTGTTTTTGATTTAGAAAATATGCTTATTGTATTATGCAGTGAGACTGAGTCTTggctgggtgcagtggcggcttatgcctgtaatctcaatac--tttgggaggccgaggcaggtagatcacttgaggccaggagtttgagaccagcctggccaacgtgacaagaccctgtctctactaaaaatacaaaaaaattagctgggcatggtgatgcacatctgtaatcccagctacttggtaacctgaggcatgagaatctcttgaacccgagaggcagaggttgcagtgagccacgatcatgccgctgtactccagcctgggctacagatcaagactcagtcttaaaggaagaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 876436 356 + 1946073 CGGTGTTCTTATTTTTGATTTAGAAAATATGCTTATTGTATTATGCAGTAAGAC--AGTCTTggctgggtgcagtggcggcttatgcctgtaatctcaatac--ttt--gaggccgaggcaggtagatcacttgaggccaggagtttgagaccagcctggccaacgtgacaagaccctgtctctactaaaaatacaaaaaaattagctgggcgtggtgatgcacacctgtaatcccagctacttggtaacctgaggcatgagaatctcttgaacccgagaggcagaggtggcagtgagccacgatcatgccactgtactgcagcctgggctacagatcaggactcagtcttaaaggaaaaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1907160 343 - 2117846 CTGTGTTCTGGTTTTTGATTTAGAAAATATGCTTACTGTGTTATGCAATAAAACTGAGTTTTggctgggtgcagt---ggcttactcctgtaatctcaatac--tttgggaggccaaggcgggtggatcacttgaggccaggagtttgagaccagcctggccaacatgatgagaccctgtctctactgaaaatacaaaaaa-----ttcggcatggtaatacgtgcttataatcccagctacttgggagcctgaggcatgacaatctcttgaacctgtgaggcagacgttgcctggagt---------gccactgtacgccagcctgggcaacagatcaagactctgtctcaaaaacaaaaa i calJac3.chrUn_GL286373 C 0 I 16 s saiBol1.JH378157 8817902 343 - 16357246 CTGTGTTCTGGTTTTTGATTTAGAAAATATGCTTACTGTTTTAGGCAATAATACTGAATTTTggctggatgcagt---ggcttactcctgtaatctcaatactttttggtagaccgaggcgggtggatcacttgaggccaggagtttgagaccagcctggccaacatgatgagaccctgtctctactgaaaatacaaaaaa-----ttaggcatggtaatacgtacttataatcccagctacttgggagccttaggcacgagaatctcttgaacctgtgaggcagacgttacctggagc---------gccactgtactccagcctgggcaacagatcaaaactctgtctcaaaaaaaaa-- i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46061673 726 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I a score=6829.000000 s hg38.chr22_GL383582v2_alt 40411 6 + 162811 --aaaaaT s panTro5.chr22 28796139 4 + 37823149 --aaa--T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41100802 4 + 50109623 --aaa--T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3073372 5 + 4464012 --aaa-aT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106600345 5 - 115148730 --aaa-ag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84224790 4 + 92844088 --aaa--g i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87569967 4 - 96509753 --aaa--g i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7061691 4 - 13098629 --aaa--g i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4028317 4 - 4483953 --aaa--G i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24658811 4 + 33263144 --aaa--G i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13922298 4 - 14338769 --aaa--G i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 876792 4 + 1946073 --aaa--G i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8818245 6 - 16357246 aaaaa--g i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46061673 726 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1907503 16 - 2117846 I a score=2812073.000000 s hg38.chr22_GL383582v2_alt 40417 387 + 162811 ACTGAGTCTTACACActtttgcatctttgtgtctctatgggtcttcacacagagcttggcacattgtagctgctcagtcagcactgtttgtgctgaatTGAAACAATGAGATATGTACAAAGGGGCTGTCTCTCACTACTGGGGATTTAAAGCCACCCCGAGGCATTTGACAAGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGCCCCCCTAAGACACGATGTCACACATAGACACCACTCTCTGTGCGAA--------A-GGGGGGGCCTGT-GCACTGAACTCCCAGACTTAGCTGGGCCTCAGTGCTCTTCTT-GGGTTTGGTCATAGAGCCCAAGAGGAGGTGGATAAG---CTGCCT-GACACTGATATGGTAAAAGGATTATCTGC s panTro5.chr22 28796143 387 + 37823149 ACTGAGTCTTACACACtcttgcatctttgtgtctctatgggtcttcacacagagcttggcacattgtagctgctcagtcagcactgtttgtgctgaatTGAAACAATGAGATACGTACAAAGGGGCTGTCTCTCACTACTGGGGATTTAAAGCCACCCCGAGGCATTTGACAAGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGCCCCCCTAAGACTTGATGTCACACATAGACACCACTCTCCGTGCGAA--------A-GGGGAGGCCTGT-GCACTGAACTCCCAGACTTAGCTGGGCCTCAGTGCTCTTCTT-GGGTTTGGTCATAGAGCCCAAGAGGAGGTGGATAAG---CTGCCT-GACACTGATATGGTAAAAGGATTATCTGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41100806 387 + 50109623 ACTGAgtcttacacacttttgcatctttgtgtctctatgggtcttcacacagagcttggcacattgtagctgctcagtcagcactgtttgtgctgaattgaAACAATGAGATACGTACAAAGGGGCTGTCTCTCACTACTGGGGATTTAAAGCCACCCTGAGGCATTTGACAAGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGCCCCCCTAAGACTTGATGTCACACATAGACACCACTCTCCGTGCGAA--------A-GGGGAGGCCTGT-GCACTGAACTCCCAGACTTAGCTGGGCCTCAGTGCTCTTCTT-GGGTTTGGTCATAGAGCCCAAGAGGAGGTGGATAAG---CTGCCT-GACACTGATATGGTAAAAGGATTATCTGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3073377 384 + 4464012 ACTGAGTCTTACACActtttgcatctttatgtctctatgggtcttcacacagagcttggcacattgtagctgctcagtcagcactgtttgtgctgaattgaaccaatGAGATACGTACAAAGGGGCTGTCTCTCACTACTGGGGATTTAAAGCCACCC-GAGGCATTTGACAAGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAG-CCCCCTAAGACATGATGTCACACATAGACACCACTCTCCGTGCGAA--------A-GGGGAGGCCTGT-GCACTGAACTCCCAGACTTAGTTGGGCCTCAGTGCTCTTCTTGGGGTTTGGTCATAGAGCCCAAGAGGAGGTGGATAAG---CTGCCT-GACACTGATATGT--AAAGGATTATCTGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106600350 385 - 115148730 aCTGAGTCTTACACACCTTTGCGTCTTtgtgtctctatgagtcttcacacagagcttggcacattgtagctgctcagtcagcactgtttgtgctgaattgaaccaatGAGATACGTACAAAGGGGCTGTCTCTCACTACTGGGGATTTAAAGCCACCCCGAGGCTGTTGACAAGCTGTTCTGGCCAAGGCTGAAGAGGTTGTCCTGTCATAAAGCCCCCCTAAGACATGATGTCACAC--AGACACCACTCTCTGTGCAAA--------A-GGGGAGGCCTGT-GCACTGAACTCCCAGACTTAGCTGGGCCTCAGTGCTCTTGTC-GGGTTTGGTCGTAGAGCCCAAGAGGAGGTGGATAAG---CTGCCT-GACACTGATCTGGTAAACGGATTATCTGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84224794 386 + 92844088 aCTGAgtcttacacacctttgtgtctttgtgtctctatgggacttcacacagagcttggcatattgtagctgctcaaccagtactgtttgtgctgaattgaACCAACGAGATACGTACAAAGGGGCTGTCTCTCACTGCTGGGGATTTAAAGCCACCCTGAGGCATTTGAC-GGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGTCCCCCTAAGACATGATGTCACACATAGACACCACTCTCCATGCAAA--------A-GGGGGGGCCGGT-GCACTGAACTCCCAGAGTTAGCTGGGCCCCAATGCTCCTCTC-GGGTTTGGTCGTAGAGCCCAAGAGGGGGTAGATAAG---CTGCCT-GACACTGATATGGTAAAAGGCTTATCTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87569971 386 - 96509753 aCTGAGTCTTACACACCTTTGTGTCTTTGTGTCTCTATGGGACTTCACACAGAGCTTGGCATATTGTAGCTGCTCAACCAGTACTGTTTGTGCTGAATTGAACCAACGAGGTACGTACAAAGGGGCTGTCTCTCACTGCTGGGGATTTAAAGCCACCCTGAGGCATTTGAC-GGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGTCCCCCTAAGACATGATGTCACACATAGACACCACTCTCCATGCAAA--------A-GGGGGGGCCGGT-GCACTGAACTCCCAGAGTTAGCTGGGCCCCAATGCTCCTCTC-GGGTTTGGTCGTAGAGCCCAAGAGGGGGTAGATAAG---CTGCCT-GACACTGATATGGTAAAAGGCTTATCTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7061695 386 - 13098629 actgagtcttacacacctttgtgtctttgtgtctctatgggacttcacacagagcttggcatattgtagctgctcaactagtactgtttgtgctgaattgaACCAACGAGATACGTACAAAGGGGCTGTCTCTCACTGCTGGGGATTTAAAGCCACCCTGAGGTATTTGAC-GGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGTCCCCCTAAGACATGATGTCACACATAGACACCACTCTCCATGCAAA--------A-GGGGGGGCCGGT-GCACTGAACTCCCAGAGTTAGCTGGGCCCCAATGCTCCTCTC-GGGTTTGGTCATAGAGCCCAAGAGGGGGTAGATAAG---CTGCCT-GACACTGATATGGTAAAAGGCTTATCTGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4028321 387 - 4483953 ACTGAGTCTTACACACCTTTGCGTCTTtgtgtctctatgggacttcacacagagcttggcatattgtagctgctcaaccagtactgtttgtgctgaatTGAACCAACGAGATACGTACAAAGGGGCTCTCTCTCACTACTGGGGATTTAAAGCCACCCTGAGGCATTTGAC-AGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGTCCCCCTAAGACATGATGTCACACATAGACACCACTCTCCATGCAAA--------AGGGGGGGGCCGGT-GCACTGAACTCCCAGAGTTAGCTGGGCCCCAATGCTTCTCTC-GGGTTTGGTCATAGAGCCCAAGAGGGGGTAGATAAG---CTGCCT-GACACTGATATGGTAAAAGGCTTATCTGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24658815 386 + 33263144 ACTGAGTCTTACACACCTTTGTGTCTTTGTGTCTCTATGGGACTTCACACAGAGCTTGGCATATTGTAGCTGCTCAACCAGTACTGTTTGTGCTGAATTGAAACAACGAGATACGTACAAAGGGGCTGTCTCTCACTACTGGGGATTTAAAGCCACCCTGAGGCATTTGAC-GGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGTCCCCCTAAGACATGATGTCACACATAGACACCACTCTCCATGCAAA--------A-GGGGGAGCCGGT-GCACTGAACTCCCAGAGTTAGCTGGGCCCCAATGCTCCTCTC-GGGTTTGGTCATAGAGCCCAAGAGGGGGTAGATAAG---CTGCCT-GACACTGATATGGTAAAAGGCTTATCTGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13922302 386 - 14338769 ACTGAGTCTTACACACCTTTGCGTCTTtgtgtctctatgggacttcacacagagcttggcatattgtagctgctcaaccagtactgtttgtgctgaatTGAACCAACGAGATACGTACAAAGGGGCTGTCTCTCACTACTGGGGATTTAAAGCCACCCTGAGGCATTTGAC-GGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGTCCCCCTAAGACATGATGTCACACATAGACACCACTCTCCATGCAAA--------A-AGGGGGGCCGGT-GCACTGAACTCCCAGAGTTAGCTGGGCCCCAATGTTCCTCTC-GGGTTTGGTCACAGAGCCCAAGAGGGGGTAGATAAG---CTGCCT-GACACTGATATGGTAAAAGGCTTATCTGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 876796 385 + 1946073 AC-GAGTCTTAcacacctttgcgtctttgtgtttctatgggacttcacacagagcttggcatattgtagctgctcagtcagtactgtttgtgctgaattgaaccaacgagatacgtacaaaggggctgtctctcactacTGGGGATTTAAAGCCACCCTGAGGCATTTGAC-GGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGTCCCCTTAAGACATGATGTCACACATAGACACCACTCTCCATGCAAA--------A-GTGGGGGCCGGT-GCACTGAACTCCCAGAGTTAGCTGGGCCCCAATGCTCCTCTT-GGGTTTGGTCATAGAGCCCAAGAAGGGGTAGATAAG---CTGCCT-GACACTGATATGGTAAAAGGATTATCTGC i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8818251 394 - 16357246 aCTGAGGCTTACACACCTTTGTGTCTTtgtgtctctatgggacttcacacagagcttggcacattgtggctgctcagttagcactgtttgtgctgaatTGAACCAACGAGATATGTCCAAAGGGGCTACCTCTCACTACTGGGGATTTAAAGCCACCCTGAGGCATTTGACAAGCTGTTCTGACCAAGGTTGAAGAGGTTGTCCCGTCATAAAG-CCCCCTAAGACATGATGTCACACATAGACACCACTCTCCCTGCAAAGTTGGTGGA-GGGGGAGGCTGT-GCACTGGACTGCCAGACTTAGCTGGGCTCCAGTGCTCTTCTC-GGGTTTGGTCCTAGAGCCCAAGAGGAGGTGGATAAG---CTGCCT-GACACTGATATGGTAAAAGGATTATCTGC i saiBol1.JH378157 C 0 C 0 s canFam3.chr10 46062399 389 - 69331447 ACTGAGTCTCACACACCTTTATGTCTTTGCATCCCTATAGGACTTTGCACGTAACTTGACACACCACAAGTGCTTGGGCAGCATTGTTCACATTGAATGGAACTAGAGAGACAGCCACAAAGGTGCTGCCTCAGACTGGTGGGA--TCTAGGCCACTCTGTGGCACTTGACAAACTGCTCTGGCCACGGTTGGAGAGGCTGTCCTGTCATAAAG-CCCCCTAAGACATGATGTCACACACAGACACCTCTCTCCTTACAAA--------A-GGGAGGGGCTGTGGTGTTGGCCTCCCAGACTTAGCTGGGCTCCCGTGCCTTCCTC-AGGCTCGGCCCTAGAGCTTGAAGAGAGGTGAGCAGGACACTGCCTGGACGCTGATATGATCAGAGGGTGCTCTGC i canFam3.chr10 I 726 C 0 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1907503 16 - 2117846 I a score=84326.000000 s hg38.chr22_GL383582v2_alt 40804 11 + 162811 AAATTTCTAGC s panTro5.chr22 28796530 11 + 37823149 AAATTTCTAGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41101193 11 + 50109623 AAATTTCTAGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3073761 11 + 4464012 AAATTTCTAGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106600735 11 - 115148730 AAATTTCTAGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84225180 11 + 92844088 AGATTTCTAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87570357 11 - 96509753 AGATTTCTAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7062081 11 - 13098629 AGATTTCTAGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4028708 11 - 4483953 AAATTTCTAGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24659201 11 + 33263144 AAATTTCTAGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13922688 11 - 14338769 AAATTTCTAGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 877181 11 + 1946073 AAATTTCTAGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1907519 11 - 2117846 AAATCACTAGC i calJac3.chrUn_GL286373 I 16 I 1 s saiBol1.JH378157 8818645 11 - 16357246 AAATCACTAGC i saiBol1.JH378157 C 0 I 1 s canFam3.chr10 46062788 11 - 69331447 AAGTTGCTGAA i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I a score=3971.000000 s hg38.chr22_GL383582v2_alt 40815 1 + 162811 G s panTro5.chr22 28796541 1 + 37823149 G i panTro5.chr22 C 0 C 0 s panPan2.chr22 41101204 1 + 50109623 G i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3073772 1 + 4464012 G i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106600746 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84225191 1 + 92844088 G i rheMac8.chr10 C 0 C 0 s macNem1.NW_012012688v1 7062092 1 - 13098629 G i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4028719 1 - 4483953 G i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24659212 1 + 33263144 G i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13922699 1 - 14338769 G i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 877192 1 + 1946073 G i colAng1.NW_012115588v1 C 0 C 0 s canFam3.chr10 46062799 1 - 69331447 A i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8818656 1 - 16357246 I e calJac3.chrUn_GL286373 1907530 1 - 2117846 I e macFas5.chr10 87570368 0 - 96509753 C a score=1140614.000000 s hg38.chr22_GL383582v2_alt 40816 238 + 162811 TCATCAAGACTGGCCTCTTTGGTAAGCAGGCCTAAAAGGCTGCCCTCAATAAACCACCCAAGCAGGTGAAAATTATCTTTTTACCCCAAGCCTACCTTTTCTACATCCTTTTCTACTTGACATGCCCCTTCTACTCCT---CTTCTCTCCTTTAGGACTCATTCTCTCTCCTTTCCTCCTCTAAACCTCCTCCCAGAAAAAGACCTGATAACTTCACTTACACCGGGTTATAGATGACTAA s panTro5.chr22 28796542 238 + 37823149 TCATCAAGACTGGCCTCTTTGGTAAGCAGGCCTAAAAGGCTGCCCTCAATAAACCACCCAAGCAGGTGAAAATTATCTTTTTACCCCAAGCCTACCTTTTCTACATCCTTTTCTACTTGACATGCCCCTTCTACTCCT---CTTCTCTCCTTTAGGACTCATTCTCTCTCCTTTCCTCCTCTAAACCTCCTCCCAGAAAAAGACCTGATAACTTCACTTACACCGGGTTATAGGTGACTAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41101205 238 + 50109623 TCATCAAGACTGGCCTCTTTGGTAAGCAGGCCTAAAAGGCTGCCCTCAATAAACCACCCAAGCAGGTGAAAATTATCTTTTTACCCCAAGCCTACCTTTTCTACATCCTTTTCTACTTGACATGCCCCTTCTACTCCT---CTTCTCTCCTTTAGGACTCATTCTCTCTCCTTTCCTCCTCTAAACCTCCTCCCAGAAAAAGACCTGATAACTTCACTTACACCGGGTTATAGGTGACTAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3073773 234 + 4464012 TCATCAAGATTGGCCTCTTTGGTAAGCAGGCCTAAAAGGCTGCCCTCATTAAACCA-CCAAGCAGGTGAAAATTATCTTTTTGCCCCAAGCCTACCTTTTCTACATCCTTTTCTACTTGGCATGCCCCTTCTACTCCT---CTTCT-TCCTTTAGGA-TCATTCTCTCTCCTTTCCTCCTCTAAACCTCCT-CCAGAAAAAGACCTGATAACTTCACTTACACTGGGTTATAGATGACTAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106600747 238 - 115148730 TCATCAAGGTTGGCCTCTTTGGTAAGCAGGCCTAAAAGGCTGCCCTCAGTAAACCACCCAAGCAGGTGAAAATTATCTTTTTGCCCCAAGCCTACCTTTTCTGCAACCTTTTCTACTTGGCATGCCCCTTCTACTCCT---CTTCTCTCCTTTAGGACTCATTCTCTCTCCTTTCCTCCTCTAAACCTCCTCCAAGAAAAAGACCTGATAACCTCGCTTACACCGGGTTATAGATGACTAA i nomLeu3.chr7b C 0 C 0 s cerAty1.NW_011999588v1 4028720 235 - 4483953 TCATCAAGGTTGGCCTCTTTGGTAAGCAGGCCTAAAAGGATGCCCTCAATAAACCA-CCAAGCAGGTGAAAATTATCTTTTTACCCCAAGCCTACCTTTTCTGCATCCTTTTCTACTTGGCATGCCCCTTCTACTC-----CTCCTCTCCTTTAGGACTCATTCTCTCTCCTTTCCTCCTCTAAACCTCCTCCCAGAAAAAGACCTGATAACTTCACTTACACCGGGTTATAGATGACCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24659213 240 + 33263144 TCATCAAGGTTGGCCTCTTTGGTAAGCAGGCCTAAAAGGATGCCTTCAATAAACCA-CCAAGCAGGTGAAAATTATCTTTTTACCCCAAGGCTACCTTTTCTGCATCCTTTTCTACTTGGCATGCCCCTTCTACTCCTCTTCTCCTCTCCTTTAGGACTCATTCTCTCTCCTTTCCTCCTCTAAACCTCCTCCCAGAAAAAGACCTGATAACTTCACTTACACCGGGTTATAGATGACCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13922700 239 - 14338769 TCATCAAGGTTGGCCTCTTTGGTAAGCAGGCCTAAAAGGATGCCCTCAATAAACCA-CCAAGCAGGTGAAAATTATCTTTTTACCCCAAGCCTACCTTTTCTGCATCCTTTTCTACTTGGCATGCCcc-tctactcctcttctcctctcctttaggactcattctctctcctttcctcCTCTAAACCTCCTCCCAGAAAAAGACCTGATAACTTCACTTACACCGGGTTATAGATGACCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 877193 240 + 1946073 TCATCAAGGTTGGCCTCTTTGGTAAGTAGGCCTAAAAGGATGCCCTCAATAAACCA-CCAAGCAGGTGAAAATTATCTTTTTACCCCAAGCCTACATTTTCTGCATCCTTTTCTACTTGGCATGCCCCTTCTACTCCTCTTCTCCTCTCCTTTAGGACTCATTCTCTCTCCTTTCCTCCTCTAAACCTCCTCCCAGAAAAAGACCTGATAACTTCACTTACACTGGGTTATAGATGACCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1907531 233 - 2117846 TCATCAAGGTTGGCCTCTTTGGCCAGCAGGCCTAAAAGGCTGCACTCAATAAACCACCCAAGCAGATGA--ATT-TTTTTTTACCCCAAGCCTACCTTTTCTGCATCCGTTCCTGCTTGGCATG-TCCTTTTGCCCCT---CTCCTCTCCTTTAGGACTCATTC-CTCTCCTTTCCTCCTCTAAACCTCCTCCCACAAAAAAACCTGATAACTTCACTCACACCGAGTTTTAGATAACTAA i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8818657 235 - 16357246 TTATTAAGGTTGGCCTCTTTGGTAAGCAGGCCTAAAAGCCTGCACTTAGTAAACCACCCAAGCAGATAAATATT-TTTTTTTACCCCAAGGCTACCTTTTCTGCATCCTTTCCTACTTGGCATG-TCCTTCTGCTCCT---CTCCTCTCCTTTAAGACTCATTC-CTCTCCTTTCCTCCTCTAAACCTCCTCCCAGAAAGAAACCTGATAACTTCACTCACATCGAGTTATAGATAACTAA i saiBol1.JH378157 I 1 C 0 s canFam3.chr10 46062800 226 - 69331447 TCACCAAGATTGGC------AGCAAGTGGG-CTCAAAGGCTGCCCTCAGTAGAGCACCTGAGCAGGTGAAAATTGGCTTTACAACTCTTAGcttccctttccccat-ctttcctacctggcat-ccccttttccctctcttcctctctccctcAGGA-----TCTGTTTACTTTCCTCCTCCAGACTGCCTCTCGGAAAAAG-CTGGATAACTTTGCTCACACCAAGGTAGAAATGACTAA i canFam3.chr10 C 0 I 5009 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e macNem1.NW_012012688v1 7062093 0 - 13098629 C e macFas5.chr10 87570368 0 - 96509753 C e rheMac8.chr10 84225192 0 + 92844088 C a score=981070.000000 s hg38.chr22_GL383582v2_alt 41054 224 + 162811 CAAAGCTTACTATTGAATATGTTGCTAGTAGAAATCTG-AATAAGATACAGCAACTTTTCAACTCTGATCATGGCTTTAAGCACTAGGATGAACCACAGCCATGTAATCA----TTCATTTGGTTACTTAGCTCTTGCTGTGTCCCACGCATAGGGGCAGCTACTGGGGGTTTGACAGTGGACGGACCTAAAGTGGTCCCTCAGTCAGGGGACAGTACAGTACCCTAAG s panTro5.chr22 28796780 224 + 37823149 CAAAGCTTACTATTGAATATGTTGCTAGCAGAAATCTG-AATAAGATACAGCAACTTTTCAACTCTGATCAGGGCTTTAAGCACTAGGATGAACCACAGCCATGTAATCA----TTCATTTGGTTACTTAGCTCTTGCTGTGTCCCACGCATAGGGGCAGCTACTGGGGGTTTGACAGTGGACGGACCTAAAGTGGTCCCTCAGTCAGGGgacagtacagtaccctaag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41101443 224 + 50109623 CAAAGCTTACTATTGAATATGTTGCTAGCAGAAATCTG-AATAAGATACAGCAACTTTTCAACTCTGATCAGGGCTTTAAGCACTAGGATGAACCACAGCCATGTAATCA----TTCATTTGGTTACTTAGCTCTTGCTGTGTCCCACGCATAGGGGCAGCTACTGGGGGTTTGACAGTGGACTGACCTAAAGTGGTCCCTCAGTCAGGGgacagtacagtaccctaag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3074007 217 + 4464012 CAAAGCTTACTATTGAATATGTT-CTAGCAG-AATCTG-AATAAGATACAG-AACTTTTCAACTCTGATCAGGGCTTTAAGCACTAGGA-GAACCACAGCCATGTAATCA----TTCATTTCGTTACTTAGCTCTTGCTGTGTCCCACGCATAGGGGCAGCTA-TGGGGGTTTGACAGTGGACGGACCTAAAGTGGTCC--CAGTCAGGGgacagtacagtaccctaag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106600985 222 - 115148730 CAAAGCTTACTATTGAATATATTGCTAGCAGAAATCTG-AATAAGATACAGCAACTTTTCAACTCTGATCAGGGCTTTAAGCACTAGGATGAACCACAGCCATGTAAtca----ttcatttggttactgagctcttgctgtgtcccacgcataggggcagctactgggggtttgacagtggacagacctaaagtggtccctCagtc--gggacagtacagtaccctaag i nomLeu3.chr7b C 0 C 0 s cerAty1.NW_011999588v1 4028955 223 - 4483953 CAAAGCTTACTATTGAATATATTGGTAGCAGAATTCTGAAATAAGATACAGCAAC-TTTCAACTCTAATCAGGGCTTTAAGCACTAGGATGAACCACAGCCATGTAATCA----TTCATTTGGTTACTGAGCTCTTGCTGTTTCCCACGCGTAAGGGCAGCTACTAGGGGTTTGACAGTGGACGGACCTAAAGTGGTCCCTCAGTCA-GGgacagtacagtaccctaag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24659453 222 + 33263144 CAAAACTTACTATTGAATATATTGCTAGCAGAATTCTG-AATAAGATACAGCAAC-TTTCAACTCTAATCAGGGCTTTAAGCACTAGGATGAACCACAGCCATGTAATCA----TTCATTTGGTTACTGAGCTCTTGCTGTTTCCCACGCATAAGGGCAGCTACTAGGGGTTTGACAGTGGACGGACCTAAAGTGGTCCctcagtca-gggacagtacagtaccctaag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13922939 222 - 14338769 CAAAGCTTACTATTGAATATATTGCTAGCAGAATTCTG-AATAAGATACAGCAAC-TTTCAACTCTAATCAGGGCTTTAAGCACTAGGATGAACCACAGCCATGTAATCA----TTCATTTGGTTACTGAGCTCTTGCTGTTTCCCACGCATAAGGGCAGCTACTAGGGGTTTGACAGTGGACGGACCTAAAGTGGTCCCTCAGTCA-GGGACAGTacagtatcctaag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 877433 223 + 1946073 CAAAGCTTACTATTGAATATATTGCTAGCAGAATTCTG-AATAAGATACAGCAAC-TTTCAACTCGAATCAGGGCTTTAAGCACTAGGATGAACCACAGCCATGTAATCA----TTCATTTGGTTACTGAGCTCTTGCTGTTTCCCACGCATAAGGGCAGCTACTGCGGGTTTGACAGTGGACGGACCTAAAGTGGTCCCTCAGTCAGGGGacagtacagtatcctaag i colAng1.NW_012115588v1 C 0 I 11 s calJac3.chrUn_GL286373 1907764 224 - 2117846 CAAAGCTTACTATTAAATATATTGCTAGCAGGGCTCTG-AGTAAGGGACAGCAACTTTTCAAGTCTGATCAGGGCTTTAAGTGCTAGGATGAGCCACAGTCATGTAATCATTTGTTCATTTGGTTACTGAGCTCTTGCTGTGTCC----CATGAGGGCAGCTACTGGGGATTTGACAGTGGATGGGCCTAAAGTGGTCTCTCAGTCAGGAGATGGTACAGTACCCTAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8818892 228 - 16357246 CAAAGCTTACTATTAAATATATTGCTAGCAGGGTTCTG-AGTAAGGTACAGCAACTTTTCAACTCTTATCAGGGCTTTAAGTGCTAGGATGAGTCACAGTCATGTAATCATTCATTCATTTGGTTACTGAGCTCTTGCTGTGTCCCATGCATGAGGGCAGCTACTGGGGGTTTGACAGTGGATGGGCCTAAAGTGGTCTCTCAGCCAGGAGACCGTACAGTACCCTAAG i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e macNem1.NW_012012688v1 7062093 0 - 13098629 C e macFas5.chr10 87570368 0 - 96509753 C e rheMac8.chr10 84225192 0 + 92844088 C a score=50092.000000 s hg38.chr22_GL383582v2_alt 41278 13 + 162811 AGCACTGAGGAGG s panTro5.chr22 28797004 13 + 37823149 agcactgaggagg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41101667 13 + 50109623 agcactgaggagg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3074224 13 + 4464012 agcactgaggagg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106601207 13 - 115148730 agcactgaggagg i nomLeu3.chr7b C 0 C 0 s cerAty1.NW_011999588v1 4029178 13 - 4483953 agccctgaggagg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24659675 13 + 33263144 agccctgaggagg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13923161 13 - 14338769 agccctgaggagg i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1907988 13 - 2117846 AGCACTGAAGAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8819120 13 - 16357246 AGCACTGAAGAGG i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e colAng1.NW_012115588v1 877656 11 + 1946073 I e macNem1.NW_012012688v1 7062093 0 - 13098629 C e macFas5.chr10 87570368 0 - 96509753 C e rheMac8.chr10 84225192 0 + 92844088 C a score=291842.000000 s hg38.chr22_GL383582v2_alt 41291 66 + 162811 GCCACCCCACGTGAACTCaggtagtcaggggagccctcctgaaagccatggagaaacacattctag s panTro5.chr22 28797017 66 + 37823149 gccaccccacctgaactcaggtagtcaggggagccctcctgaaagccatggagaaacacattctag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41101680 66 + 50109623 gccaccccacctgaactcaggtagtcaggggagccctcctgaaagccatggagaaacacattctag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3074237 64 + 4464012 gcca-cccacctgaactcaggtagtcaggggagccttcctgaaagCCATGGAGAAACACGTTCTA- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106601220 66 - 115148730 gccaccccacctgaactcaggtagtcagggaagccttcttgaaagccatggagaaacacattctgg i nomLeu3.chr7b C 0 C 0 s cerAty1.NW_011999588v1 4029191 66 - 4483953 gccaccccacctgaactcaggtagtcagggaaggcttcctgaaagccatggagaaacacattctag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24659688 66 + 33263144 gccaccccacctgaactcaggtagtcagggaaggcttcctgaaagCCATGGAGAAACACATTCTAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13923174 66 - 14338769 gccaccccacctgaactcaggtagtcagggaaggcttcctgaaagccatggagaaacacattctag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 877667 66 + 1946073 cCCACCCCacctgaagtcaggtagtcagggaagccttcctgaaagccatggagaaacacattctag i colAng1.NW_012115588v1 I 11 C 0 s calJac3.chrUn_GL286373 1908001 66 - 2117846 GCTACCCTACGTGACCTCGggcagtgagggaagccttcccgaaagccatggagaagcacgttctag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8819133 66 - 16357246 GCTACCCCATGTgaactcaagtagtcagggaagccttcctgaaagccatagagaagcacattctag i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e macNem1.NW_012012688v1 7062093 0 - 13098629 C e macFas5.chr10 87570368 0 - 96509753 C e rheMac8.chr10 84225192 0 + 92844088 C a score=6600.000000 s hg38.chr22_GL383582v2_alt 41357 1 + 162811 g s panTro5.chr22 28797083 1 + 37823149 g i panTro5.chr22 C 0 C 0 s panPan2.chr22 41101746 1 + 50109623 g i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3074301 1 + 4464012 G i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106601286 1 - 115148730 g i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87570368 1 - 96509753 G i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4029257 1 - 4483953 g i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24659754 1 + 33263144 G i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13923240 1 - 14338769 g i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 877733 1 + 1946073 g i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1908067 1 - 2117846 g i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8819199 1 - 16357246 g i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e macNem1.NW_012012688v1 7062093 0 - 13098629 C e rheMac8.chr10 84225192 0 + 92844088 C a score=792320.000000 s hg38.chr22_GL383582v2_alt 41358 125 + 162811 tagataacagcacatgcaaaggcctagaagt--gagtgtctgaggtgGAAGTTCAGAGTCTTTGTCGTCAGCAG---GACATGGAGCAACACTTGACACTGAGATTTAGGCagagagaga-cagagag---aca s panTro5.chr22 28797084 115 + 37823149 tagataacagcacatgcaaaggcctagaagt--gagtgtctgaggtgGAAGTTCAGAGTCTTCGTCGTCAGCAG---GACATGGAGCAACACTTGACACTGAGATTTAGGCagagagaga-------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41101747 115 + 50109623 tagataacagcacatgcaaaggcctagaagt--gagtgtctgaggtgGAAGTTCAGAGTCTTCGTCGTCAGCAG---GACATGGAGCAACACTTGACACTGAGATTTAGGCagagagaga-------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3074302 121 + 4464012 TAGAGAACAGCACATGCAAAG--CTAGAAGT--GAGTGTCTGAGGTGGAAGTTCAGAGTCTTGTTTGTCAGCAG---GACATGGAGCAACAC--AACACTGAGATTTAGGCAG-gagagaccagagag---aca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106601287 122 - 115148730 tagagaacagcacatgcaaaggcctagaagt--gagtgtctgaggtgGAAGTTCAGAGTCTTTGTCATCAGCAG---GACATGGAGCAACAC-TGACActgagatttaggcagagacaga-cagacag---a-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84225192 123 + 92844088 TAGACAACAGCACATGCAAAGGCCTAGAAGT--GAGTGTCTGAGGTGGAAGTTCAGAGTCTTTGTCGTCAGCAGCAAGACATGGAGAAAAAT--GACATTGAGATTTAGGCagagagaga-cagagag------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87570369 123 - 96509753 TAGACAACAGCACATGCAAAGGCCTAGAAGT--GAGTGTCTGAGGTGGAAGTTCAGAGTCTTTGTCGTCAGCAGCAAGACATGGAGAAAAAT--GACATTGAGATTTAGgcagagagaga-cagagag------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7062093 123 - 13098629 TAGACAACAGCACATGCAAAGGCCTAGAAGT--GAGTGTCTGAGGTGGAAGTTCAGAGTCTTTGTCGTCAGCAGCAAGACATGGAGAAAAAT--GACATTGAGATTTaggcagagagaga-cagagag------ i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4029258 123 - 4483953 tagacaacagcacatgcaaaggcctagaagT--GAGTGTCTGAGGTGGAAGTTCAGAGTCTTTGTCGTCAGCAGCAAGACATGGAGAAAAAT--GACATTGAGATTTAGGCagagagaga-gagagag------ i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24659755 123 + 33263144 TAGACAACAGCACATGCAAAGGCCTAGAAGT--GAGTGTCTGAGGTGGAAGTTCAGAGTCTTTGTCGTCAGCAGCAAGACATGGAGCAAAAT--GACATTGAGATTTAGgcagagagaga-cagagag------ i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13923241 123 - 14338769 tagacaacagcacatgcaaaggcctagaagt--gagtgtctgaggtgGAAGTTCAGAGTCTTTGTCATCAGCAGCAAGACATGGAGAAAAAT--GACGTTGAGATTTAGGCagagagaga-cagagag------ i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 877734 126 + 1946073 tagagaacagcacatgcaaaggcctagaagt--gagtgtctgaggtagaagttcagagtctttgtcgtcagcagcaggacatggagaaaaac--gacattgagatttaggcagagacaga-cagagagaca--- i colAng1.NW_012115588v1 C 0 I 41 s calJac3.chrUn_GL286373 1908068 123 - 2117846 tagagaacagcatgtgcaaaggcctagaagtgagagtgtctgaggtgAAAGTTCAGAGTCTCTGTTGTCAGCAGCAGGACATGGAGCAACAC-TGACATTGAGATTTAGGCAGAGGGAGA-GAGA--------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8819200 124 - 16357246 taaag-acagcatgtacaaaggactagaagtgagagtgtctgaggtgAAGGTTCAGAGCCTCTGTTGTCAGCAGCAGGACATGGAGCAACCC-TGACATTGAGATTTAGGCagagggaga-gagaaa------- i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I a score=49659.000000 s hg38.chr22_GL383582v2_alt 41483 25 + 162811 aag----agagatagagagacag-aaacag s panTro5.chr22 28797199 25 + 37823149 aag----agagatagagagacag-aaacag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41101862 25 + 50109623 aag----agagatagagagacag-aaacag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3074423 30 + 4464012 aagagacagagatagagagacagaaaacag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106601409 25 - 115148730 gac----agagatagagagacag-aaacag i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87570492 14 - 96509753 ---------------agagacag-ggacag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7062216 14 - 13098629 ---------------agagacag-ggacag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4029381 14 - 4483953 ---------------agagacag-ggacag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24659878 14 + 33263144 ---------------agagacag-ggacag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13923364 14 - 14338769 ---------------agagacag-ggacag i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1908191 23 - 2117846 ------GACAGACAGAGAGACAG-GGGTAG i calJac3.chrUn_GL286373 C 0 I 600 s saiBol1.JH378157 8819324 25 - 16357246 ----atgagagggagagagacag-acagag i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e colAng1.NW_012115588v1 877860 41 + 1946073 I e rheMac8.chr10 84225315 0 + 92844088 C a score=17256.000000 s hg38.chr22_GL383582v2_alt 41508 14 + 162811 atacagagacagag-- s panTro5.chr22 28797224 14 + 37823149 atacagagacagag-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41101887 14 + 50109623 atacagagacagag-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3074453 13 + 4464012 atacagagacaga--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106601434 10 - 115148730 atacagagac------ i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87570506 2 - 96509753 ag-------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7062230 14 - 13098629 agatagagacagag-- i macNem1.NW_012012688v1 C 0 I 20 s cerAty1.NW_011999588v1 4029395 14 - 4483953 agatagagacagag-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24659892 10 + 33263144 agatagagac------ i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13923378 12 - 14338769 agatagagacag---- i manLeu1.NW_012102031v1 C 0 C 0 s saiBol1.JH378157 8819349 16 - 16357246 agaCAGGGACAGGTAG i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I e colAng1.NW_012115588v1 877860 41 + 1946073 I e rheMac8.chr10 84225315 0 + 92844088 C a score=-2576.000000 s hg38.chr22_GL383582v2_alt 41522 26 + 162811 --ttagagatacagagagatag--acagag s panTro5.chr22 28797238 26 + 37823149 --ttagagatacagagagatag--atagag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41101901 22 + 50109623 --ttagagatacagagagat------agag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3074466 21 + 4464012 ---tagagatacagagagat------agag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106601444 4 - 115148730 --------------------------agag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84225315 2 + 92844088 ----------------------------ag i rheMac8.chr10 C 0 I 14 s macFas5.chr10 87570508 18 - 96509753 ------------atagagacagagagagag i macFas5.chr10 C 0 I 16 s cerAty1.NW_011999588v1 4029409 22 - 4483953 --------agagagagagacagaaactgag i cerAty1.NW_011999588v1 C 0 I 2 s chlSab2.chr19 24659902 26 + 33263144 ----agagagagagagagacagacactgag i chlSab2.chr19 C 0 I 2 s manLeu1.NW_012102031v1 13923390 26 - 14338769 ----agagagagagagagacagaaactgag i manLeu1.NW_012102031v1 C 0 I 2 s saiBol1.JH378157 8819365 30 - 16357246 GAGGAAAACCAGAGCATGAAAGAGAAAGAG i saiBol1.JH378157 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I e colAng1.NW_012115588v1 877860 41 + 1946073 I e macNem1.NW_012012688v1 7062244 20 - 13098629 I a score=21106.000000 s hg38.chr22_GL383582v2_alt 41548 40 + 162811 acagagacagagatagagacagagctagagatacag----------agag s panTro5.chr22 28797264 36 + 37823149 acagagatagaga----gatagagacagagatacag----------agag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41101923 28 + 50109623 acagagatagaga------------cagagatacag----------agag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3074487 21 + 4464012 acagagataggat------------caga-----------------agag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106601448 28 - 115148730 atagagacagagt------------tagagatacag----------agag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84225331 38 + 92844088 atagagacagaga------------gagagagacagaaactgagatatag i rheMac8.chr10 I 14 C 0 s macFas5.chr10 87570542 16 - 96509753 atagagacagag----------------------------------atag i macFas5.chr10 I 16 C 0 s macNem1.NW_012012688v1 7062264 16 - 13098629 atagagacagag----------------------------------atag i macNem1.NW_012012688v1 I 20 C 0 s cerAty1.NW_011999588v1 4029433 16 - 4483953 atagagacagag----------------------------------atag i cerAty1.NW_011999588v1 I 2 C 0 s chlSab2.chr19 24659930 16 + 33263144 atagagacagag----------------------------------atag i chlSab2.chr19 I 2 C 0 s manLeu1.NW_012102031v1 13923418 16 - 14338769 atagagacagag----------------------------------atag i manLeu1.NW_012102031v1 I 2 C 0 s saiBol1.JH378157 8819395 38 - 16357246 --AGGAGTGGGAGGTAGTAGGAAAACCAGAACATAA----------AGAG i saiBol1.JH378157 C 0 I 3576 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I e colAng1.NW_012115588v1 877860 41 + 1946073 I a score=127723.000000 s hg38.chr22_GL383582v2_alt 41588 76 + 162811 agacagagatacagagagagagacagatagagatacacagagagaggcagagacagaaatagagac--tgagagaggc s panTro5.chr22 28797300 74 + 37823149 agacaga--tacagagagagagacagatagagatacagagagagaggcagagacagaaatagagac--tgagagaggc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41101951 74 + 50109623 agacagagatacagagagagagacagatagagatacagagagagaggcagagac--aaatagagac--tgagagaggc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3074508 75 + 4464012 agacagagata---agagagacagagatagagatacagagagagaggcagagacagaaatagagacagagagagaggc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106601476 56 - 115148730 agatagagaca----------gaaagatagagatacagagatagaggcagagacagaaatagagag------------ i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84225369 62 + 92844088 agacagagata------gagacagagttagagat----agatagaggcagag----aaacagagag--ggagagaggc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87570558 50 - 96509753 agacagagtt------------------agagat----agatagagacagag----aaacagagag--ggagagaggc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7062280 50 - 13098629 agacagagtt------------------agagat----agatagagacagag----aaacagagag--ggagagaggc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4029449 46 - 4483953 agacagagtt------------------agagat----agatagagacagag----aaac----ag--ggagagaggc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24659946 50 + 33263144 agacagagtta------------------gagat----agatagagacagag----aaacagagag--ggagagaggc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13923434 48 - 14338769 agacagagtta------------------gagat----agatagagacagag----aaac--agag--ggacagaggt i manLeu1.NW_012102031v1 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8819433 3576 - 16357246 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I e colAng1.NW_012115588v1 877860 41 + 1946073 I a score=1125832.000000 s hg38.chr22_GL383582v2_alt 41664 253 + 162811 agagacag-aaatagagactgagagaggcagagacagaaagagagacagagatagagactgagagat--------------------------------agagagagagaggagtgggaggcaggaggaaaaccagagcatgagaggtcaagcagccaagagaaaaggcgaggtcgttaaagaaagggtcagctggggccgggtgcagtggctcatgcctgtaatcccagcactttggaagaccgaggcaggcggatcacgaggtcaggagatcaggaccatcctg s panTro5.chr22 28797374 227 + 37823149 agagacag-aaataga------------------cagacagagata----gacagagactgagagat--------------------------------agagagag----gagtgggaggcaggaggaaaaccagagcatgagaggtcaagcagccaagagaaaaggcgaggtcgttaaagaaagggtcagctggggccgggtgcagtggctcatgcctgtaatcccagcactttggaagaccgaggcaggcggatcacgaggtcaggagatcaggaccatcctc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41102025 227 + 50109623 agagacag-aaataga------------------cagacagagata----gacagagactgagagat--------------------------------agagagag----gagtgggaggcaggaggaaaaccagagcatgagaggtcaagcagccaagagaaaaggcgaggtcgttaaagaaagggtcagctggggccgggtgcagtggctcatgcctgtaatcccagcactttggaagaccgaggcaggcggatcacgaggtcaggagatcaggaccatcctg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3074583 231 + 4464012 agagacagaaaataga--------------gagacagacagagata----gacagagactgagagat--------------------------------agagagagagaggagtgggagGCAGGAGGAAAACCAGAGCATGAGA-GTCAAGCA-CCAAGAGAAAAGGTGAGGTCGTTAAAGAAAGGGTC-GCTGGggcgggttgcagtggctcatgcctgtaatcccagca-tttggaagaccgaggcaggcggatcacgaggtcaggagatcagga-catccta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106601532 203 - 115148730 ----acag-agataga----------------------------------ga--------gagagag--------------------------------agagagaa----gagtgggaggcagggggaaaaccagagcatgagaggtcaagcagccaagagaaaaggcgaggtcgttaaagaaagggtcagctggggccgggtgcagtggctcacgcctgtaatcccagcactttgtaagaccgaggcgggcggatcacgaggtcaggagatcaagaccatcctg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84225431 243 + 92844088 agagacag-aaataga--------------------gacagagata----gacagagactgagagac------------------agagagagagagagagagagagaaaggagtgGGAGGCAGGAGGTAAACCAGAGCATGAGAGGTCAACCAGCCAAGAGAAAAGGCGAGGTCGTTAAAGAAAGGGTCAGCTGGggccgggcgcggtggctcacacctgtaatcccagcactttgggaggttgaggggagcggatcatgaggtcaggagatcgagaccatcctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87570608 243 - 96509753 agagacag-aaataga--------------------gacagagata----gacagagactgagagac------------------agagagagagagagagagagagaaaggagtggGAGGCAGGAGGTAAACCAGAGCATGAGAGGTCAACCAGCCAAGAGAAAAGGCAAGGTCGTTAAAGAAAGGGTCAGCTGGggccgggcgcggtggctcacacctgtaatcccagcactttgggaggtcgaggggggcggatcacgaggtcaggagatcgagaccatcctg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7062330 261 - 13098629 agagacag-aaataga--------------------gacagagata----gacagagactgagagacagagagagacagagagagagagagagagagagagagagagaaaggagtggGAGGCAGGAGGTAAACCAGAGCATGAGAGGTCAACCAGCCAAGAGAAAAGGCGAGGTCGTTAAAGAAAGGGTCAGCTGGggccgggcgcggtggctcacacctgtaatcccagcactttgggaggtcgaggggggcggatcacgaggtcaggagatcgagaccatcctg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4029495 230 - 4483953 agagacag-gaataga--------------------gacag----a----gacagagactgagagac----------------------agagagagagagagagagaaaggagTGGGAGGCAGGAGGTAAACCAGAGCATGAGAGGTCAACCAGCCAAGAGAAAAGGCGAGGTCGTTAAAGAAAGGGTCA-----ggctgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagacgggcggatcacaaggtcaggagatcaagaccatcctg i cerAty1.NW_011999588v1 C 0 I 1225 s chlSab2.chr19 24659996 241 + 33263144 agagacag-aaataga--------------------gacagagata----gacagagactgagagac--------------------agagagagagagagagagagaaAAGAGTGGGAGGCAGGAGGTAAACCAGAGCATGAGAGGTCAGCCAGCCAAGAGAAAAGGCGAGATCGTTAAAGAAAGGATCAGCTGGggccaggtgcagtggctcacacctgtaatcccagcactttgggaggtcgaggggggcggatcacgaggtcaggagatcgagaccatcctg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13923482 232 - 14338769 agagacag-gaataga--------------------gacagagata----gatagagactgagagac--------------------agagagagagagagagaaag----gagtgGGAGGCAGGAGGTAAACCAGAGCATGAGAGGTCAACCAGCCAAGAGAAAAGGCGAGGTCGTTAAAGAAAGGGTCA-----ggctgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagacgggcggatcacaaggtcaggagatcaagaccatcctg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 877901 261 + 1946073 agagacag-agataga--------------------gacagttaga----gatagagacagagaaatagagacagagatagacagagactgagagacagagagagagaaaggagtgggaggcaggaggtaaaccagagcatgagaggtcaaccaaccaagagaaaaggcgaggtcgttaaagaaagggtcagctggggccaggtgcagtggctcacacctgtaatcccagcactttgggaggtcgaggggggcggatcacgaggtcaggagatcgagactatcctg i colAng1.NW_012115588v1 I 41 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8819433 3576 - 16357246 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I a score=471276.000000 s hg38.chr22_GL383582v2_alt 41917 121 + 162811 gctaacatggggaaaccccgcctctgctagtaaat---------ac-aaaaaaattagctgggcctcgtggcgggccgcctgtagtctcagctactcgggaggctgaagcaagagaatggtgtgaacccgg s panTro5.chr22 28797601 121 + 37823149 gctaacatggggaaaccccgcctctactagtaaat---------ac-aaaaaaattagctgggccttgtggcgggccgcctgtagtctcagctactcgggaggctgaagcaagagaatggtgtgaacccgg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41102252 121 + 50109623 gctaacatggggaaaccccgcctctactagtaaat---------ac-aaaaaaattagctgggccttgtggcgggccgcctgtagtctcagctactcgggaggctgaagcaagagaatggtgtgaacccgg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3074814 117 + 4464012 gctaacatggggaaaccccgtctctacta-taaat---------ac--aaaaaattagctgggcctcgtgg-gggccgcttgtagtctcagctacttgggaggctgaagcaagagaatggtgtgaa-ccgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106601735 122 - 115148730 gctaacatggtgaaaccccgtctctactagtaaat---------acaaaaaaaattagctgggcctcgtggcagactgcctgtagtctcagctactcgggaggctgaagcaagagaatggtgtgaacctgg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84225674 128 + 92844088 gctaacatattgaaaccccatctctactagtaagt--aaattaaaa-aaaaaaattagccaggcctcgtggcaggccacctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87570851 128 - 96509753 gctaacatattgaaaccccatctctactagtaagt--aaatttaaa-aaaaaaattagccaggcctcgtggcaggccacctgtagtcccaactactcgggaggctgaggcaggagaatggcatgaacccgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7062591 128 - 13098629 gctaacatattgaaaccccatctctactagtaagt--aaattaaaa-aaaaaaattagccaggcctcgtggcaggccacctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccgg i macNem1.NW_012012688v1 C 0 C 0 s chlSab2.chr19 24660237 119 + 33263144 gctaacgtattgaaaccccatctctactagtaagt---------aa-aaaaaaa--aattaggcctcgtggcaggccacctgtagtcccagctactcaggaggctgaggcaggagaatggcatgaacccgg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13923714 119 - 14338769 tctaacccggtgaaaccccatctctagtaaaaaat---------ac-aaaaaaa-tagccgggcgaggtggcgag-cgtctgtagtcccagctactcgggaggctgaggcaggagaatggcgtaaacccgg i manLeu1.NW_012102031v1 C 0 M 800 s colAng1.NW_012115588v1 878162 130 + 1946073 gctaacgtattaaaaccccatctctactagtaagtaaaaaaaaaaa-aaaaaaattagccaggccttgtggcaggccacctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccgg i colAng1.NW_012115588v1 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8819433 3576 - 16357246 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I e cerAty1.NW_011999588v1 4029725 1225 - 4483953 I a score=258080.000000 s hg38.chr22_GL383582v2_alt 42038 95 + 162811 gaggcggagcttgcagtgagccgagatcacgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaagaaaa---------- s panTro5.chr22 28797722 79 + 37823149 gaggcggagcttgcagtgagccaagatcacgccactgcactcaagcctgggtgacagagcaagactctgtctca----------------gaaaa---------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41102373 79 + 50109623 gaggcggagcttgcagtgagccaagatcacgccactgcactcaagcctgggtgacagagcaagactctgtctca----------------gaaaa---------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3074931 77 + 4464012 gaggcggagcttgcagtgagccaagatcacgccactgcactcaag-ctgggtgacagagcaagactctgtctca-----------------aaaa---------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106601857 79 - 115148730 gaggcggagcttgcagtgagccgagatcacgccactgcactcaagcctgggtgacagagcaagactccgtctca----------------aaaaa---------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84225802 85 + 92844088 gaggcggagcttgcagtgagctgagataatgccactacactccagcctgggtgacagagcaagactctgtctc----------aaaaaaaaaaaa---------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87570979 88 - 96509753 gaggcggagcttgcagtgagctgagataatgccactacactccagcctgggtgacagagcaagactctgtctca-------aaaaaaaaaaaaaa---------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7062719 84 - 13098629 gaggcggagcttgcagtgagctgagataatgccactacactccagcctgggtgacagagcaagactctgtctc-----------aaaaaaaaaaa---------- i macNem1.NW_012012688v1 C 0 C 0 s chlSab2.chr19 24660356 89 + 33263144 gaggcagagcttgcagtgagc-----taacgccactacactccagcctgggtgacagagcaagactctgtctca-------aaaaaaaaaaaaaaagaaaa---- i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 878292 92 + 1946073 gaggcggagcttgcagtgagcggagataacatcactacagtccagcctgggtgacagagcaagactccatctca-------aaaagaaaaaaaaa------aaag i colAng1.NW_012115588v1 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8819433 3576 - 16357246 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I e manLeu1.NW_012102031v1 13923833 800 - 14338769 M e cerAty1.NW_011999588v1 4029725 1225 - 4483953 I a score=2655503.000000 s hg38.chr22_GL383582v2_alt 42133 578 + 162811 aaaggaaagagtcatctgggtttggtgactaggagcgtactggtgacctcagtgagaggggtttcagaggctta-tggagacagatgcaggttgaagtgggttgtggagcgcgggagaggt-agaaagcagtaaacacacccccctgccaacaccgctctcaggagactggtgtgaagggtaggg-----gtcaggacgctagctggagaaggaatatgggttcaagggagaagggcttttttctttttaatagaagagatcagcaatgtgtttagatgctgatggaaggagccagaaaaaaggaaaaggagaatattgaggtgagac--gagatctccaaatgcccaggtgagaagaccagatgaaatggggcacaggagtagggctagctttggaga-gggaggggagcctcctcccctcatcccctggaagaggaaatggcctatgagaagccggtgagtgaatgggtttggtggcagcaagttgaggaaatgcccatctgatggtgcctatgctctctgctgaaagtgaggaagacggggtggagttagaggttaaagagagaATCTAAGGGCCGGgcactgtg s panTro5.chr22 28797801 578 + 37823149 aaaggaaagggtcatctgggtttggtgactaggagcgtactggtgacctcagtgagagggatttcagaggctta-tggggacagatacaggttgaggtgggttgtggagcgcgggagaggt-agaaagcagtaaacacacccccctgccaacaccgctctcaggagactggtgtgaagggtaggg-----gtcaggacactagctggagaaggaatatgggttcaagggagaagggcttttttctttttaatagaagagatcagcaatgcgtttagatgctgatggaaggagccagaaaaaaggaaaaggagaatattgaggtgagac--gagatctccaaatgcccaggtgagaagaccagatgaaatggggcacaagagtagggctagctttggaga-gggaggggagcctcctcccctcctcccctggaagaggaaatggcctatgagaagccggtgagtgaatgggtttggtggcagcaagttgaggaaatgcccatctgatggtgcctatgctctctgctgaaagtgaggaagacggggtggagttagaggttaaagagagaATCTAAGGGCCGGGCACtgtg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41102452 574 + 50109623 aaaggaaagggtcatctgggtttggtgactaggagcgtactggtgacctcagtgagaggggtttcagaggctta-tggggacagatacaggttgaggtgggttgtggagtgcgggagaggt-agaaagcagtaaacacacccccctgccaacaccgctctcaggagactggtgtgaagggtaggg-----gtcaggacactagctggagaaggaatatgggttcaagggagaagggcttttttctttttaatagaagagatcagcaatgcgtttagatgctgatggaaggagccagaaaaaaggaaaaggagaatattgaggtgagac--gagatctccaaatgcccaggtgagaagaccagatgaaatggggcacaagagtagggctagctttggaga-gggaggggagcctcctcccctcctcccctggaagaggaaatggcctatgagaagccggtgagtgaatgggtttggtggcagcaagttgaggaaatgcccatctgatggtgcctatgctctctgctgaa----aggaagACGGGGTGGAGTTAGAGGTTAAAGAGAGAATCTAAGGGCTGGGCACtgtg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3075008 558 + 4464012 aaaagaaaGGGT-ATCTGGGTTTGGTGACTAGGAGCGTA-TGGTGACCTCAGTGAGAGGGGTTTCAGAGGCTTA-TGGG--CAGATACAGGTTGAAGTGGGTTGTGGAG-GCGGGAGAGGT-AGAAAGCAGTAAACACA-CCCTCTGCCAACAC--CTCTCAGGAGACTGGTGTGAAGGGTA-GG-----GTCAGGACACTAGCTGGAGAAGGAATATGGGTTCAA-GGAGAAGGGCTTTCTTCTTTTTAATAGAAGAGAT-AGCAATGTGTTTAGATGCTGATGGAAGGAGCCAGAAAAAAGGAAAAGGAGAATATTGAGGTG-GAC--GAGATCT-CAAATGCCC-GGTGAGAAGACCAGATGAAATGGGGCACCGGAGTAGGGCTAGCTTTGGAGA-GGGA-GGGCGCCTCCTCCC----TCTCCTGGGAGAGGAAATGGCCTATGAGAAG-CGGTGAGTGAATGGGTTTGGTGGCAGCAAGTTGAGGAAATGCCCATCTGATGGTGCCTATGCTCTCTGCTGAAAGTGAGGAAGACGGGGTGGAGTTAGAGGTTAAAGAGAGAATCTAAGGGCTGGgcactgtg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106601936 577 - 115148730 agaagaaagggtcatctgggtttggtgactaggagtgtacttgtgacctcagtaagaggggtttcagaggctta-tggggacagatacaggttgaagtgggttgtggagtgtgggagaggt-agaaagcagtaaaca-actcccctgccaacaccactctcaggagactggtgtgaagggtaggg-----gtcaggacactagctggagaaggcatatgggttcaagggagaagggcttttttctttttaatagaagagatcagcaatgtgtttagatgctgatggaaggagccagaaaaaaggaaaaggagaatattgaggtgagac--gagatcttcaaatgcccaggtgagaagaccagatgaaatggggcacaggagtagggctagcttcggaga-gggagggcagcctcctcccctcctcccctggaaaagaaaatggcctgtgagaagctggtgagtgaatgggtttggtggcagcaagttgaggaaatgcccatctgatggtgtctatgctctctgctgaaagtgaggaagacagggtggagttagaggttaaagagagaATCTAAGGGCCAGGCACTGTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84225887 582 + 92844088 aaaagaaaGGGTCAGCtgggtttggtgactaggagtgtattggtgaccttagtgag-ggggtttcagaggctta-tagggacagatacaggttgaagtggattgtggagtgcgggagaggt-agaaagcagtaaataca-ccccctgccaacaccactttcaggagactggtgtgaagggtagggggtcagttaggacagtagctggagaaggaatatggattcaagggagaagggcttttttctttttaatggaagagatcagcaatgtgtttagatgctgatggaaggagccagaaaaaaggaaaaggagaatattgaggtgagac--gagatccccaaatgcccaggtgagaagaccagatgaaatggggcacaggagcaaggctagcttcggagacaggagggcagcctcctcttttccccccctggaagaggaaatggcccatgagaagccggtgagtgaatgggtttggtggccgaaagttgaggaaatgcccatctgatggtgcctgtgttctctgctgaatgtgaggaagacagggtGGAGTTAGAGGTTAAAGAGAGAATCTAAGGGACGGGCACTGTG i rheMac8.chr10 C 0 I 15 s macFas5.chr10 87571067 582 - 96509753 aaaagaaaGGGTCAGCtgggtttggtgactaggagtgtattggtgacctcagtgag-ggggtttcagaggctta-tagggacagatacaggttgaagtggattgtggagtgcgggagaggtaagaaagcagtaaataca-ccccctgccaacaccactttcaggagactggtgtgaagggtagggggtcagttaggacagtagctggagaaggaatatggattcaagggagaagggcttttttctttttaatggaagagatcagcaatgtgtttagatgctgatggaaggagccagaaaaaaggaaaaggagaatattgaggtgagac--gagatccccaaatgcccaggtgagaagaccagatgaaatggggcacaggagcaaggctagcttcggagacaggagggcagcctcctcttctccccccc-ggaagaggaaatggcccatgagaagccggtgagtgaatgggtttggtggccgaaagttgaggaaatgcccatctgatggtgcctgtgttctctgctgaatgtgaggaagacagggtGGAGTTAGAGGTTAAAGAGAGAATCTAAGGGACGGGCACTGTG i macFas5.chr10 C 0 I 15 s macNem1.NW_012012688v1 7062803 581 - 13098629 aaaagaaaGGGTCAGCtgggtttggtgactaggagtgtattggtgacctcagtgag-ggggtttcagaggctta-tagggacagatacaggttgaagtggattgtggagtgcgggagaggt-agaaagcagtaaataca-ccccctgccaacaccactttcaggagactggtgtgaagggtagggggtcagttaggacagtagctggagaaggaatatggattcaagggagaagggcttttttctttttaatggaagagatcagcaatgtgtttagatgctgatggaaggagccagaaaaaaggaaaaggagaatattgaggtgagac--gagatacccaaatgcccaggtgagaagaccagatgaaatggggcacaggagcaaggctagcttcggagacaggagggcagcctcctcttctccccccc-ggaagaggaaatggcccatgagaagccggtgagtgaatgggtttggtggcagaaagttgaggaaatgcccatctgatggtgcctgtgttctctgctgaatgtgaggaagacagggtGGAGTTAGAGGTTAAAGAGAGAATCTAAGGGACGGGCACTGTG i macNem1.NW_012012688v1 C 0 I 15 s chlSab2.chr19 24660445 581 + 33263144 ---agaaaGGGTCAGCtgggtttggtgactaggagtgtattggtgacctcagtgag-ggggtttcagaggctta-tagggacagatacaggttgaagtggattgtggagtgtgggagaggt-agaaagcagtaaataca-ccccctgccaacaccactttcaggagactggtgtgaagggtagggggtcagttaggacagtagctggagaaggaatatggattcaagggagaagggcttttttctttttaatggaagagatcagcaatgtgtttagatgctgatggaaggagccagaaaaaaggaaaaggagaatattgaggtgagacaagagatccccaaatgcccaggtgagaagaccagatgaaatggggcacaggagcaaggctagcttcggagacaggagggcagcctcctcttctcctcccctggaagaggaaatggcccatgggaagccggtgagtgaatgggtttggtggcagaaagttgaggaaatgcccatctgatggtgcctgtgttctctgctgaatgtgaggaagacagggtGGAGTTAGAGGTTAAAGAGAGAATCTAAGGGACAGGCACTGTG i chlSab2.chr19 C 0 I 15 s manLeu1.NW_012102031v1 13924634 584 - 14338769 AAAGgaaaggatcagctgggtttggtgactaggagtgtattggtgacctcagtgag-ggggtttcagaggctta-tagggacagatacaggttgaagtggattgtggagtgcgggagaggt-agaaagtagtaaataca-ctccctgccaacaccactttcaggagactggtgtgaagggtagggggtcagttaggacagtagctggagaaggaatatggattcaagggagaagggcttttttctttttaatggaagagatcagcaatgtgtttagatgctgatggaaggagccagaaaaaaggaaaaggagaatattgaggtgagacaagagatccccaaatgcccaggtgagaagaccagatgaaacggggcacaggagcaaggctagcttcggagacaggagggcagcctcctcttctcctcccctggaagaggaaatggcccatgagaagccggtgagtgaatgggtttggtggcagaaagttgaggaaatgcccatctgatggtgcctgtgttctctgctgaatgtgaggaagacagggtGGAGTTAGAGGTTAAAGAGAGAATCTAAGGGACGGGCACTGTG i manLeu1.NW_012102031v1 M 800 I 15 s colAng1.NW_012115588v1 878384 585 + 1946073 aaaggaaagggtcagctgggtttggtgactaggagtgtattggtgacctcagtgag-ggggtttccgaggcttattagggacagatacaggttgaagtggattgtggagtgtgggagaggt-agaaagcagtaaacaca-ccccctgccaacaccactttcaggagactggtgtgaagggtagggggtcagttagggcagtagctagagaaggaatatgggttcaagggaaaagggcttttttctttttaatggaagagatcagcaatgtgtttagatgctgatggaaggagccagaaaaaaggaaaaggagaatattgaggtgagacaagagatccccaaatgcccaggtgagaagaccagatgaaatggggcacaggagcaaggctagcttcggagaggggaggacagcctcctcttctcctcccctggaagaggaaatggcccatgagaagccagtgagtgaatgggtttggtggcagaaaggtaaggaaatgcccatctgatggtgcctgtgttctctgctgaatgtgaggaagacaaggtGGAGTTAGAAGTTAAAGAGAGAATCTAAGGGACGGGCACTGTG i colAng1.NW_012115588v1 C 0 I 15 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8819433 3576 - 16357246 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I e cerAty1.NW_011999588v1 4029725 1225 - 4483953 I a score=1265789.000000 s hg38.chr22_GL383582v2_alt 42711 228 + 162811 agg-------------------agggcaaggc---aggattggtggagcccaggagttcaagaccagcctgggcaacatag----accctgtctctac----aaaaaaattaaaaattagctgggtgtgg-tgaggtgtgcctgtggtcccagctactcaggaagctgaggtagaaggatcacttgagtgcaggatgttaaggctgcagtgagctgggatcacgccact-gcactccagcctgagtgacacagcaagact s panTro5.chr22 28798379 229 + 37823149 agg----------------------gcaaggc---aggattggtggagcccaggagttcaataccagcctgggcaacatagtgagaccctgtctctac----aaaaaaattaaaaattagctgggtgtgg-tgaggtgtgcctgtggtcccagctactcaggaagctgaggtagaaggatcacttgagtgcaggatgttaaggctgcagtgagctgggatcacgccact-gcactccagcctgagtaacacagcaagact i panTro5.chr22 C 0 C 0 s panPan2.chr22 41103026 229 + 50109623 agg----------------------gcaaggc---aggattggtggagcccaggagttcaataccagcctgggcaacatagtgagaccctgtctctac----aaaaaaattaaaaattagctgggtgtgg-tgaggtgtgcctgtggtcccagctactcaggaagctgaggtagaaggatcacttgagtgcaggatgttaaggctgcagtgagctgggatcacgccact-gcactccagcctgagtaacacagcaagact i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3075566 230 + 4464012 agg-------------------agggcaaggc---aggattggtgga-cccaggagttcaagaccagcctgggcaacat-gtgagaccctgtctctac----aaaaaaatt-aaaattagctgggtgtggttgaggtgtgcctgtggt-ccagctactcaggaagctgaggtggaaggatcacttgagtgcaggatgttgaggctgcagtgagctgggatcacgccactggcactccagcctgagtgacacagcaagact i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106602513 254 - 115148730 AGGAGGGCCGGgcactgtgaggagggcaaggcaggaggattggtggagcccaggagttcaagaccagcctgggcaacatagtgagaccctgtctctac----aaaaaaattaaaaattagctaggcgtgg-tgacgtgtgcctgtggtcccagctactcaggaagctgaggtgggaggatcacttgagtgcaggatgttgaggctgcagtgagctgggatcacgccact-gcactccagcctgagtgacacagcaagact i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84226484 232 + 92844088 agg-------------------agggcaaggcaggaggattggtggagcccaggagttcaagaccagcctgggcaacatagtgagaccctgtctctac--aaaaaaaaattaaaaagtagctgggcgtgg-tggcgtgtgcctgtggtcccagctactcaggaagctgaagtgagaggatcacttgagtgtgggatgttgaggctgcagtgagcagtgat-----cact-gcactccagcctgagtgacacagcaagact i rheMac8.chr10 I 15 C 0 s macFas5.chr10 87571664 237 - 96509753 agg-------------------agggcaaggcaggaggattggtggagcccaggagttcaagaccagcctgggcaacatagtgagaccctgtctctac--aaaaaaaaattaaaaagtagctgggcgtgg-tggtgtgtgcctgtggtcccagctactcaggaagctgaagtgagaggatcacttgagtgtgggatgttgaggctgcagtgagcagtgatcactccact-gcactccagcctgagtgacacagcaagact i macFas5.chr10 I 15 C 0 s macNem1.NW_012012688v1 7063399 237 - 13098629 agg-------------------agggcaaggcaggaggattggtggagcccaggagttcaagaccagcctgggcaacatagtgagaccctgtctctac--aaaaaaaaattaaaaagtaactgggcgtgg-tggcgtgtgcctgtggtcccagctactcaggaagctgaagtgagaggatcacttgagtgtgggatgttgaggctgcaatgagcagtgatcactccact-gcactccagcctgagtgacacagcaagact i macNem1.NW_012012688v1 I 15 I 329 s cerAty1.NW_011999588v1 4030950 237 - 4483953 agg-------------------agggcaaggcaggaggattggtggagcccaggagttcaagaccagcctgggcaacatagtgagaccctgtctctac--aaaaaataattaaaaagtagctgggcgtgg-tggcgcatgcctgtggtcccagctactcaggaagctgaagtgagaggatcacttgagtgtgggatgttgaggctgcagtgagcagtgatcactccact-gcactccagcctgagtgacacagcaagact i cerAty1.NW_011999588v1 I 1225 C 0 s chlSab2.chr19 24661041 237 + 33263144 agg-------------------agggcaaggcaggaggattggtggagcccaggagttcaagaccagcctgggcaacatagtgagaccctgtctctac--aaaaaaaaattgaaaagtagctgggcgtgg-tggcgcatgcctgtggtcccagctactcaggaagctgaagtgagaggatcacttgagtgtgggatgttgaggctgcagtgagcagtgatcactccact-gcactccagcccgagtgacacagcaagact i chlSab2.chr19 I 15 C 0 s manLeu1.NW_012102031v1 13925233 237 - 14338769 agg-------------------agggcaaggcaggaggattggtggagcccaggagttcaagaccagcctgggcaacatagtgagaccctgtctctac--aaaaaaaaattaaaaagtagctgggcgtgg-tggtgcgtgcctgtggtcccagctactcaggaagctgaagtgagaggatcacttgagtgtgggatgttgaggctgcagtgagcagtgatcactccact-gcactccagcctgagtgacacagcaagact i manLeu1.NW_012102031v1 I 15 C 0 s colAng1.NW_012115588v1 878984 239 + 1946073 agg-------------------agggcaaggcaggaggattggtggagcccaggagttcaagaccagcctgggcaacatagtgagaccctgtctctacaaaaaaaaaaattaaaaagtagctgggtgtgg-tggtgcgtgcctgtggtcccagctactcaggaagctgaggtgggaggatcacttgagtgtgggatgttgaggctgcggtgagcagtgatcactccact-gcactccagcctgagtgacacagcaagact i colAng1.NW_012115588v1 I 15 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8819433 3576 - 16357246 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I a score=27776.000000 s hg38.chr22_GL383582v2_alt 42939 8 + 162811 ctgtcttt s panTro5.chr22 28798608 8 + 37823149 ctgtcttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41103255 8 + 50109623 ctgtcttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3075796 8 + 4464012 ctgtcttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106602767 8 - 115148730 ctgtctta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84226716 8 + 92844088 ctgtctta i rheMac8.chr10 C 0 I 7 s macFas5.chr10 87571901 8 - 96509753 ctgtctta i macFas5.chr10 C 0 I 20 s cerAty1.NW_011999588v1 4031187 8 - 4483953 ctgtctta i cerAty1.NW_011999588v1 C 0 I 8 s chlSab2.chr19 24661278 8 + 33263144 ctgtctta i chlSab2.chr19 C 0 I 2 s manLeu1.NW_012102031v1 13925470 7 - 14338769 ctgtctt- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 879223 7 + 1946073 ctgtctt- i colAng1.NW_012115588v1 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8819433 3576 - 16357246 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I e macNem1.NW_012012688v1 7063636 329 - 13098629 I a score=289906.000000 s hg38.chr22_GL383582v2_alt 42947 61 + 162811 -aaaaaaaaaaaaa---aGTggctggcctcggtgg--ctcacgcctataatcccagcactttgggag s panTro5.chr22 28798616 59 + 37823149 -aaaaaaaaaaaa-----GTggctggcctcggtgg--ctcacgcctataatcccagcactttgggag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41103263 56 + 50109623 -aaaaaaaaa--------GTggctggcctcggtgg--ctcacgcctataatcccagcactttgggag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3075804 60 + 4464012 -aaaaaaaaaaaaa----GTggctggcctcggtgg--ctcacgcctataatcccagcactttgggag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106602775 44 - 115148730 -aaaaaaaaaaaaaaaaaGTGGCTAGCCTCGGTGG--CTCACGCCTG-------------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84226731 61 + 92844088 aaaaaaaaaaaaaa----GTggctggcctcggtgg--ctcacgcctgtaatcccagcactttgggaa i rheMac8.chr10 I 7 C 0 s macFas5.chr10 87571929 61 - 96509753 aaaaaaaaaaaaaa----GTggctggcctcggtgg--ctcacgcctgtaatcccagcactttgggaa i macFas5.chr10 I 20 C 0 s macNem1.NW_012012688v1 7063965 61 - 13098629 aaaaaaaaaaaaaa----GTggctggcctcggtgg--ctcacgcctgtaatcccagcactttgggag i macNem1.NW_012012688v1 I 329 C 0 s cerAty1.NW_011999588v1 4031203 62 - 4483953 aaaaaaaaaaaaaa----aGTgctggcctcggtgggcttcacg-ctgtaaatccagcactttgggag i cerAty1.NW_011999588v1 I 8 I 40 s chlSab2.chr19 24661288 61 + 33263144 aaaaaaaaaaaaaa----GTggctggcctcggtgg--ctcacgcctgtaatcccagcactttgggag i chlSab2.chr19 I 2 C 0 s manLeu1.NW_012102031v1 13925477 61 - 14338769 aaaaaaaaaaaaaa----GTggctggcctcggtgg--ctcacgcctgtaatcccagcactttgggag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 879230 60 + 1946073 -aaaaaaaaaaaaa----GTggttggcctcggtgg--ctcacgcctgcaatcccagcactttgggag i colAng1.NW_012115588v1 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8819433 3576 - 16357246 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I a score=130519.000000 s hg38.chr22_GL383582v2_alt 43008 33 + 162811 gccgaagcgggtggatcacctgaggtcaggagt s panTro5.chr22 28798675 33 + 37823149 gccgaagtgggtggatcacctgaggtcaggagt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41103319 33 + 50109623 gccgaagtgggtggatcacctgaggtcaggagt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3075864 33 + 4464012 gccgaagcgggtggatcacctgaggtcaggagt i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84226792 33 + 92844088 gccaaagcaggtggatcacctaaggtcaggagt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87571990 33 - 96509753 gccaaagcaggtggatcacctaaggtcaggagt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7064026 33 - 13098629 gccaaagcaggtggatcacctaaggtcaggagt i macNem1.NW_012012688v1 C 0 C 0 s chlSab2.chr19 24661349 33 + 33263144 gccaaagcaggtggatcacctaaggtcaggagt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13925538 33 - 14338769 gccaaagcaggtggatcacctaaggtcaggagt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 879290 33 + 1946073 accaaagcaggtggatcacctaaggtcaggagt i colAng1.NW_012115588v1 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8819433 3576 - 16357246 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I e cerAty1.NW_011999588v1 4031265 40 - 4483953 I e nomLeu3.chr7b 106602819 0 - 115148730 C a score=486767.000000 s hg38.chr22_GL383582v2_alt 43041 90 + 162811 ttgagaccagcctggccaacatagtgaaaccccgtctct-----actaaaa-atacct-taaa-cccaggag--gtggatgttgcag-tgag-ccgagatcg s panTro5.chr22 28798708 90 + 37823149 ttgagaccagcctggccaacatagtgaaaccccgtctct-----actaaaa-atacct-taaa-cccaggag--gtggatgttgcag-tgag-ccgagatcg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41103352 90 + 50109623 ttgagaccagcctggccaacatagtgaaaccccgtctct-----actaaaa-atacct-taaa-cccaggag--gtggatgttgcag-tgag-ccgagatcg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3075897 91 + 4464012 ttgagaccagcctggccaacatagtgaaa-cccgtctct-----actaaaatatacct-taaaccccaggag--gtggatgttgcag-tgag-ccgagatcg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106602819 89 - 115148730 -Tgagaccagcctggccaacatagtgaaaccccgtctct-----actaaaa-atacct-taaa-cccaggag--gtggatgttgcag-tgag-ccgagatca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84226825 90 + 92844088 ttgagaacagcctggccaacatagtgaaaccccgtctct-----actaaaa-atacct-taaa-cccaggag--gtggatgttgcag-tgag-ccgagattg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87572023 90 - 96509753 ttgagaacagcctggccaacatagtgaaaccccgtctct-----actaaaa-atacct-taaa-cccaggag--gtggatgttgcag-tgag-ccgagattg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7064059 90 - 13098629 ttgagaacagcctggccaacatagtgaaaccccgtctct-----actaaaa-atacct-taaa-cccaggag--gtggatgttgcag-tgag-ccgagattg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4031305 99 - 4483953 ttgag-acagccctggcaacatagtgaaaccccgtctctgaataaaaaaaa-aTACCTGTAAA-CCCGCGAGGAGTGGATGTTGCAGCTGAGCCCGAGATTG i cerAty1.NW_011999588v1 I 40 I 58 s chlSab2.chr19 24661382 90 + 33263144 ttgagaccagcctggccaacatagtgaaaccccgtctct-----actaaaa-atacct-taaa-cccaggag--ttggatgttgcag-tgag-ccgagatcg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13925571 90 - 14338769 ttgagaccagcctggccaacatagtgaagccccgtctct-----actaaaa-atacct-taaa-cccaggag--gtggatgttgcag-tgag-ccgagattg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 879323 90 + 1946073 ttgagaccagcctggccaacatagtgaaaccccgtctct-----actaaaa-atacct-taaa-cccaggag--gtagatgttgcag-tgag-ccgagatcg i colAng1.NW_012115588v1 C 0 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8819433 3576 - 16357246 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I a score=175300.000000 s hg38.chr22_GL383582v2_alt 43131 40 + 162811 tgccagtacactccagcctgggcga-----cagagactccgtctc s panTro5.chr22 28798798 40 + 37823149 tgccagtacactccagcctgggcga-----cagagactccgtctc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41103442 40 + 50109623 tgccagtacactccagcctgggcga-----cagagactccgtctc i panPan2.chr22 C 0 I 2 s gorGor5.CYUI01015375v1 3075988 39 + 4464012 tgccagt-cactccagcctgggcga-----cagagactcgttcaa i gorGor5.CYUI01015375v1 C 0 I 2 s nomLeu3.chr7b 106602908 45 - 115148730 tgccagtgcactccagcctgggcgatttttttgagactccgcctc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84226915 40 + 92844088 cgctagtacactccagcctgggcga-----cagagactccgcctc i rheMac8.chr10 C 0 I 3 s macFas5.chr10 87572113 40 - 96509753 cgctagtacactccagcctgggcga-----cagagactccgcctc i macFas5.chr10 C 0 I 3 s macNem1.NW_012012688v1 7064149 40 - 13098629 cgctagtacactccagcctgggcga-----cagagactccgcctc i macNem1.NW_012012688v1 C 0 I 10 s chlSab2.chr19 24661472 40 + 33263144 cgctagtacacttcagcctgggcga-----cagagactccgcctc i chlSab2.chr19 C 0 I 1 s manLeu1.NW_012102031v1 13925661 40 - 14338769 cgctagtacactccagcctgggcga-----cagagactccgcctc i manLeu1.NW_012102031v1 C 0 I 1 s colAng1.NW_012115588v1 879413 40 + 1946073 cgctagtacactccagcctgggcga-----cagagaccccgcctc i colAng1.NW_012115588v1 C 0 I 3 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8819433 3576 - 16357246 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I e cerAty1.NW_011999588v1 4031404 58 - 4483953 I a score=1241019.000000 s hg38.chr22_GL383582v2_alt 43171 217 + 162811 agaaaaaaaaaaat-------cctccatagtcacctgtagtcagcccttcctcctactcccacaccctggcaatcagtgaacagtttcctgttcctgtggttttgactttgcaagattgtc-------------------atataaatggaaacgtatggtagccttttcagtctggtttattttacttagcacaaagcatttgagattcatctagtcacgtgtatccgtagtttgttccttt s panTro5.chr22 28798838 217 + 37823149 aaaaaaaaaaaaaT-------CCTCCATAGTCACCtgtagtcaacccttccacctactcccacaccctggcaatcagtgaacagtttcctgttcctgtggttttgactttgcaagattgtc-------------------atataaatggaaacgtatggtagccttttcagtctggtttattttacttagcacaaagcatttgagattcatctagtcacgtgtatcagtagtttgttccttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41103484 217 + 50109623 aaaaaaaaaaaaat-------cctccatagtcacctgtagtcaacccttccacctactcccacaccctggcaatcagtgaacagtttcctgttcctgtggttttgactttgcaagattgtc-------------------atataaatggaaacgtatggtagccttttcagtctggtttattttacttagcacaaagcatttgagattcatctagtcacgtgtatcagtagtttgttccttt i panPan2.chr22 I 2 C 0 s gorGor5.CYUI01015375v1 3076029 211 + 4464012 aaaaaaaaaaaaaT-------CC-CCATAGT-AACtgtagtcaacccttcctcctact-ccacaccctggccatcagtgaacagtttcctgtt-ctgtagttttgcctttgcaagattgtc-------------------atataaatggaaac-tatggtag-cttttcagtctggtttattttacttagcacaaagcatttgagattcatctagtcacgtgtatcagtagtttgttccttt i gorGor5.CYUI01015375v1 I 2 C 0 s nomLeu3.chr7b 106602953 217 - 115148730 aaaaaaaaaaaaat-------cctccatagtcatctgtagtcaacccttcctcctactcccacaccctggcaatcagtgaacagtttcctgttcctgtagttttgcctttgcaagattgtc-------------------atataaatggaaacgtatggtagccttttcagtctggtttattttacttagcacaaagcatttgagattcatctagtcacgtgtatcagtagtttgttccttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84226958 236 + 92844088 aaaaaaaaaaaaaT-------CCTCAATAGTCACCtgtagtcaacccttcctcctactcccacaccctggcaatcagtgaacagtttcctgttcctgtagttttgcctttgcaagattgtcatataaatggaagattgtcatataaatggaaatgtatggtagccttttcagtctggtttattttacttagcacaaagcatttgagattcatctagtcatgtatatcagtagtttgttccttt i rheMac8.chr10 I 3 C 0 s macFas5.chr10 87572156 236 - 96509753 aaaaaaaaaaaaaT-------CCTCAATAGTCACCtgtagtcaacccttcctcctactcccacaccctggcaatcagtgaacagtttcctgttcctgtagttttgcctttgcaagattgtcatataaatggaagattgtcatataaatggaaatgtatggtagccttttcagtctggtttattttacttagcacaaagcatttgagattcatctagtcatgtatatcagtagtttgttccttt i macFas5.chr10 I 3 C 0 s macNem1.NW_012012688v1 7064199 234 - 13098629 aaaaaaaaaaAAAT-------CCTCAGTAGTCACCtgtagtcaacccttcctcctactcccacaccctggcaatcagtga--agtttcctgttcctgtagttttgcctttgcaagattgtcatataaatggaagattgtcatataaatggaaatgtatggtagccttttcagtctggtttattttacttagcacaaagcatttgagattcatctagtcatgtatatcagtagtttgttccttt i macNem1.NW_012012688v1 I 10 C 0 s cerAty1.NW_011999588v1 4031462 236 - 4483953 aaaaaaaaaaaaaT-------CCTCAATAGTCACCtgtagtcaacccttcctcctactcccacaccctggcaatcagtgaacagtttcctgttcctgtagttttgcttttgcaagattgtcatataaatggaagattgtcatataaatggaaatgtatggtagccttttcagtctggtttattttacttagcacaaagcatttgagattcatctagtcatgtgtatcagtagtttgttctgtt i cerAty1.NW_011999588v1 I 58 C 0 s chlSab2.chr19 24661513 243 + 33263144 aaaaaaaaaaaaaaaaaaaTTCCTCAATAGTCACCtgtagtcaacccttcctcctactcccacaccctggcaatcagtgaacagtttcctgttcctgtagttttgcctttgcaagattgtcatataaatggaagattgttatataaatggaaatgtatggtagccttttcagtctggtttattttacttagcacaaagcatttgagattcatctagtcatgtgtatcagtagtttgttccttt i chlSab2.chr19 I 1 C 0 s manLeu1.NW_012102031v1 13925702 236 - 14338769 aaaaaaaaaaaaaa-------CCTCAATAGTCACCtgtagtcaactcttcctcctactcccacaccctggcaatcagtgaacagtttcctgttcctgtagttttgcttttgcaagattgtcatataaatggaagattgtcatataaatggaaatgtatggtagccttttcagtctggtttattttacttagcacaaagcatttgagattcatctagtcatgtgtatcagtagtttgttccttt i manLeu1.NW_012102031v1 I 1 C 0 s colAng1.NW_012115588v1 879456 236 + 1946073 aaaaaaaaaaaaaT-------CCTCCATAGCGACCtgtagtcaaactttcctcctactcccacaccctggcaatcagtgaacagtttcctgttcctgtagttttgcctttgcaagattgtcatataaatggaagattgtcatataaatggaaatgtatggtagccttttcagtctggtttattttacttagcacaaagcatttgagattcatctagtcatgtgtatcagtagtttgttccttt i colAng1.NW_012115588v1 I 3 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8819433 3576 - 16357246 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I a score=4661498.000000 s hg38.chr22_GL383582v2_alt 43388 794 + 162811 ta---ttgagtggtggtccgttgtatggatgttccagaacatttggactatttctagtttgggg----cata--------------------------aaatgactattaataaatattcacgtacaagttttgtgtgtacatagattttccttatacttgagtaaagagcaagcagtggaa-tttttgggtcatatggtaagtgtaagtg-taagtttaattttgtaagaaactcaaactttttcaaagcggctgtctcaccagcaataaccgagaggttccagttgttctacatcctctccagcatttgttatctttgaaagccattctaaaaggcatatTTCAATTTTTATTAGATCGGTATTGAAGATTTACATTATT-AAACTATGTAAACAggccaggcgtgatagtttacacctataatctctgcactttgggaggcgaaggcaggaggatcacttgagctcagaagttccaggccagcctggtcaacatagtgagactctgtac----aaa------a----aataaataaatAAATCAGAAAAAAATTAGCTAggtcaggcacagtggctcatgactgtaatcccaactacttgagaggtcaacatgggaggatcgcttgagtccaggacttcgagaccagcctggacaacattgggagacactg--tctattt--------------aaaaaa-aaaaattagctgagtgtggt---------ggtgccctgtgatcccagctactaaggaggctgaggtaagagagtcacttacttgagcacaggttgtggaggctgcaatgaaacgtgat-----cactgcactccagtctgggcaacagagcaagact-----------------------------------------ctttctcaaaacaa s panTro5.chr22 28799055 790 + 37823149 ta---ttgagtggtggtccattgtatggatgttccagaatatttggactatttctagtttgggg----cata--------------------------aaatgactattaatacatattcacgtacaagttttgtgtgtacatagattttccttatacttgagtaaagagcaagcagtggaa-tttttgggtcatatggtaagtgtaagtg-taagtttaattttgtaagaaactcaaactttttcaaagcggctgtctcaccagcaataaccgagaggttccagttgttctacatcctctccagcattttttatttttgaaagccattctaaaaggcatatTTCAATTTTTATTAGATCAGTATTGAAGATTTACATTATT-AAACTATGTAAACAggccaggcgtgatagttcacgcctataatctctgcactttgggaggtgaaggcaggaggatcacttgagctcagaagttccagaccagcctggtcaacatagtgagactctgtac----aaa------a----aataaataaatAAATCAGAAAAAAATTAGCTAggtcaggcacagtggctcatgcctgtaatcccaactacttgagaggtcaacatgggaggatcgcttgagtccaggagttcgagaccagcctggacaacattgggagacact------attt--------------aaaaaa-aaaaattagctgagtgtggt---------ggtgccctgtgatcccagctactaaggaggctgaggtaagagagtcacttacttgagcacaggttgtggaggctgcaatgaaacgtgat-----cactgcactccagtctgggcaacagagcaagact-----------------------------------------ctttctcaaaacaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41103701 795 + 50109623 ta---ttgagtggtggtccattgtatggatgttccagaatatttggactatttctagtttgggg----cata--------------------------aaatgactattaatacatattcacgtacaagttttgtgtgtacatagattttccttatacttgagtaaagagcaagcagtggaa-tttttgggtcatatggtaagtgtaagtgttaagtttaattttgtaagaaactcaaactttttcaaagcggctgtctcaccagcaataaccgagaggttccaattgttctacatcctctccagcattttttatttttgaaagccattctaaaaggcatatTTCAATTTTTATTAGATCAGTATTGAAGATTTACATTATT-AAACTATGTAAACAggccaggcgtgatagttcacgcctataatctctgcactttgggaggcgaaggcaggaggatcacttgagctcagaagttccagaccagcctggtcaacatagtgagactctgtac----aaa------a----aataaataaatAAATCAGAAAAAAATTAGCTAggtcaggcacagtggctcatgcctgtaatcccaactacttgagaggtcaacatgggaggatcgcttgagtccaggagttcgagaccagcctggacaacattgggagacactg--tctattt--------------aaaaaa-caaaattagctgagtgtggt---------ggtgccctgtgatcccagctactaaggaggctgaggtaagagagtcacttacttgagcacaggttgtggaggctgcaatgaaacgtgat-----cactgcactccagtctgggcaacagagcaagact-----------------------------------------ctttctcaaaacaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3076240 776 + 4464012 ta---ttgagtggtggtccattgta-ggatgttccagaacatttggactatttctagtttgggg----cat---------------------------aaatcactatta----atattcacgtacaagttttgtgtgta-ata-attttccttatacttgagtaaagagcaagcagtggaattttttgggtcatatggtaagtg-------taagtttaattttgtaagaaactcaaactttttcaaagctgctgtctcaccagcaataa-cgagaggttccagttgttctacatcctctccagca-ttgttatttttgaaagccattctaaaaggcatatTTCAA-TTTTATTAGATCAGTATTGAAGATTTACATTATT-AAACTATGTAAACAggccaggcgtgatagttcacgcctataatctctgcac-ttgggaggcgaaggcaggaggatcacttgagctcagaagttccagaccagcctggtcaacat-gtgagactctgtac----aaaaataata----aaTAAATAAATAAATCAGAAAAAAATTAGCTAggtcaggcacagtggctcatgcctgtaat-ccaactacttgagaggtcaacatgggaggatc-cttgagt-caggagttcgagaccagcctggacaacgtt-ggagacactg--ttattta--------------aaaaaa-aaaaattagctgagtgtggt---------ggtgccctgtgat-ccagctactaaggaagctgaggtaagagagtcacttacttgagcacaggttgtgaaggctgcaatgaaacgtgat-----cactgcactccagtctgggcaacagagcaagact-----------------------------------------ctttctcaaaac-a i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106603170 789 - 115148730 ta---ttgagtggtggtccattgtatggatgtgccagaacatttggactatttctagtttgggg----cata--------------------------aaatcactatta----atattcacgtacaagttttgtgtggacatagattttccttacacttgagtaaagagcaagcagtggaa-tttttgggtcatatggtaagtg-------taagtttaattttgtaagaaactcaaactttttcaaagtggctgtctcaccagcaataaccgagaggttccagttgttctacatcctctccagcatttgttatttttgaaagccattctaaaaggcatatTTCAATTTTTATTAGATCAGTATTGAAGATTTACATTATT-AAACTATGTAAACAggccaggcatgatagttcatgcctgtaatctctgcactttgggaggccaaggcaggaggatcacttgagctcagaagttccagagcagcctggtcaacatagtgagactctgtac----aat------aaatCAATCAATCAATCAATCAGAAAAAAATTAGCTAggtcaggcacagtggctcctgcctgtaatcccagctacttgagaggtcaacatgggaggattgcttgagtccaggagttcgagaccagcctggacaacattgagagacactg--tctattt--------------aaaaaacaaaaattagctgagtgtggt---------gatgccctgtgatcccagctactaaggaggctgaggtaagagagtcacttacttgagcacaggttgtggaggctgcaatgaaacgtgat-----cactgcactccagtctgggcaacagagcaagact-----------------------------------------ctttctcaaaacaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84227194 813 + 92844088 tattgttgagtggtggtccattgtttggatgtgccagaacatttgggctgtttctagtttgggg----cata--------------------------aaatcactgtta----atattcatgtacaagttttgtgtgaacatagattttccttacacttgagtaaagagctagcagtggaa-tttttgggtcatatagtaagtg-------taagtttaattttgtaagaaactcaaactttttcaaagtggctgtctcatcagcaataaccaagaggttccagttgttctacatcctctccagcatttgttctttttgaaagccattctaaaaggcatatTTCGATTTTTATTAGATCAGTATCGAAGATTTATGTTATT-AAACTATGTAAACAggccaggcgtgagagttcacgcctataatctctgcactttgagaggccaaggcaggaggatcacttgagctcagaagttccagaccagcctggtcagcatagtgtgactctgtac--aaaaa------a----aaaaaaaaaaaaAATCGGAAAAA----------------TAcagtggctcatgcctgtagtcctggctacttgagaggtcaacgtgggaggatcgctttagtccaggagtttgagaccagcctggacaacattgggagacactg--tctgtt------------------aaa-aaaaattagctgggtgtggt---------ggtgccctgtgatcccagctactaaggaagctgaggtgggagagtcacttacttgagcacaggatgtggaggctgcagtgaaacatgatcatgccactacactccagcctgggtgacagagcaagactccatctcaaaaaa--aCTCCAATCTGTACAACAGAGCAAGACTTTCTCAAAACAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87572392 813 - 96509753 tattgttgagtggtggtccattgtttggatgtgccagaacatttgggctgtttctagtttgggg----cata--------------------------aaatcactatta----atattcatgtacaagttttgtgtgaacatagattttccttacacttgagtaaagagctagcagtggaa-tttttggctcatatagtaagtg-------taagtttaattttgtaagaaactcaaactttttcaaagtggctgtctcatcagcaataaccaagaggttccagttgttctacatcctctccagcatttgttctttttgaaagccattctaaaaggcatatTTCGATTTTTATTAGATCAGTATCGAAGATTTATGTTATT-AAACTATGTAAACAggccaggcgtgagagttcacgcctataatctctgcactttgagaggccaaggcaggaggatcacttgagctcagaagttccagaccagcctggtcagcatagtgtgactctgtac--aaaaa------a----aaaaaaaaaaaaAATCGGAAAAA----------------TAcagtggctcatgcctgtagtcctggctacttgagaggtcaacgtgggaggatcgctttagtccaggagtttgagaccagcctggacaacattgggagacactg--tctatt------------------aaa-aaaaattagctgggtgtggt---------ggtgccctgtgatcccagctactaaggaagctgaggtgggagagtcacttacttgagcacaggatgtggaggctgcagtgaaacatgatcatgccactacactccagcctgggtgacagagcaagactccatctcaaaaaa--aCTCCAATCTGTGCAACAGAGCAAGACTTTCTCAAAACAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7064433 813 - 13098629 tattgttgagtggtggtccattgtttggatgtgccagaacatttgggctgtttctagtttgggg----cata--------------------------aaatcactatta----atattcatgtacaagttttgtgtgaacatagattttccttacacttgagtaaagagctagcagtggaa-tttttgggtcatatagtaagtg-------taagtttaattttgtaagaaactcaaactttttcaaagtggctgtctcatcagcaataaccaagaggttccagttgttctacatcctctccagca--tgttatttttgaaagccattctaaaaggcatatTTCGATTTTTATTAGATCAGTATCGAAGATTTATGTTATT-AAACTATGTAAACAggccaggtgtgagagttcacgcctataatctctgcactttgagaggccaaggcaggaggatcacttgagctcagaagttccagaccagcctggtcagcatagtgtgactctgtacaaaaaaa------a----aaaaaaaaaaAAAATCGGAAAAA----------------TAcagtggctcatgcctgtagtcctagctacttgagaggtcaacgtgggaggatcgctttagtccaggagtttgagaccagcctggacaacattgggagacactg--tctatt------------------aaa-aaaaattagctgggtttggt---------ggtgccctgtgatcccagctactaaggaagctgaggtgggagagtcacttacttgagcacaggatgtggaggctgcagtgaaacatgatcatgccactacactccagcctgggtgacagagcaagactccatctcaaaaaa--aCTCCAATCTGTGCAACAGAGCAAGACTTTCTCAAAACAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4031698 832 - 4483953 tattgttgagtggtggtccattgtttggatgtgccagaacatttgggctgtttctggtttgggg----cataaaatcactattaatattcatgtacacaaatcactatta----atattcatgtacaagttttgtgtgaacatagattttccttacacttgaataaagagctagcagtggaa-tttttgggtcatata------g-------taagtttaattttgtaagaaaatcaaactttttcaaagtggctgtctcatcagcaataaccaagaggttccagttgttctacctcctctccagcatttgttatttttgaaagccattctaaaaggcatatTTCGATTTTTATTAGATCAGTATCGAAGATTTATGTTATT-AAACTATGTAAACAggccaggcgtgagagttcacgcctataatctctgcactttgagaggccaaggcaggaggatcacttgagctcagaagttccagaccagcctggtcagcatagtgtgactctgtac---caaa------a----aaaaaaaaaaaaaATTGGAAAAA----------------TAcagtggctcatgcctgtaatcctagctacttgagaggtcaacgtgggaggatcgctttagtccaggagtttgagaccagcctggacaacattgggagacactg--tctatt------------------aaa-aaaaattagctgggtgtggt---------ggtgccctgtgatcccagctactaaggaagctgaggtgggagagtcacttacttgagcacaggatgtggaggctgcagtgaaacatgatcatgccactacactccagcctgggtgacagagcaagactccatctcaaaaaa--aCTCCAATCTGTGCAACAGAGCAAGACTTTCTCAAAACAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24661756 808 + 33263144 tattgttgagtggtggtccattgtttggatgtgccagaacatttgggctgtttctagtttgggg----cata--------------------------aaatcactatta----atattcatgtacaagttttgtgtgaacatagattttccttacacttgagtaaagcgctagcagtggaa-tttttgggtcatatagtaagtg-------taagtttaattttgtaagaaactcaaactttttcaaagtggctgtctcatcagcaataaccaagaggttccagttgttctacatcctctccagcatttgttatttttgaaagccattctaaaaggcatatTTCGATTTTTATTAGATCAGTATCGAAGATTTTTGTTATT-AAACTATGTAAACAAgccaggcgtgagagttcacgcctataatctctgcactttgagaggccgaggcaggaggatcacttgagctcagaagttccagaccagcctggtcagcatagtgtgactctgtac-------------a----aaagaaaaaaaaaaTTGGAAAAA----------------TAcagtggctcatgcctgtaatcctagctacttgagaggtcaacgtgggaggatcgctttagtccaggagtttgagaccagcctggacaacattgggagacactg--tctatt------------------aaa-aaaaaatagctgggtgtggt---------ggtgccctgtgatcccagctactaaggaagctaaggtgggagagtcacttacttgagcacaggatgtggaggctgcagtgaaacatgatcatgccactacactccagcctgggtgacagagcaagactccatctcaaaaaa--aCTCCAATCTGTGCAACAGAGCAAGACTTTCTCAAAACAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13925938 831 - 14338769 tattgttgagtggtggtccattgtttggatgtgccagaacatttgggctgtttctagtttgggg----cataaaatcactattaatattcatgtacacaaatcactatta----atattcatgtacaagttttgtgtgaacatagattttccttacacttgaataaagagctagcagtggaa-tttttgggtcatata------g-------taagtttaattttgtaagaaactcaaactttttcaaagtggctgtctcatcagcaataaccaagaggttccagttgttctacctcctctccagcatttgttatttttgaaagccattctaaaaggcatattttgatttttattAGATCAGCATCGAAGATTTATATTATT-AAACTATGTAAACAggccaggtgtgagagttcacgcctataatctctgcactttgagaggccaaggcaggaggatcacttgagctcagaagttccagaccagcctggtcagcatagtgtgactctgtac----caa------a----aaaaaaaaaaaaaaTCGGAAAAA----------------TAcagtggctcatgcctgtaattctagctacttgagaggtcaacgtgggaggatcgctttagtccaggagtttgagaccagcctggacaacattgggagacactg--tctatt------------------aaa-aaaaattagctgggtgtggt---------ggtgccctgtgatcccagctactaaggaagctgaggtgggagagtcacttacttgagcacaggatgtggatgctgcagtgaaacatgatcatgccactacactccagcctgggtgacagagcaagactccatctcaaaaaa--aCTCCAATCTGTGCAACAGAGCAAGACTTTCTCAAAACAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 879692 827 + 1946073 tattgttgagtggtggtctattgtttggatgtgccagaacatttgggctgtttctagtttgggg----cata--------------------------aaatcactatta----atattcatgtacaagttttgtgtgaacatagattttccttacacttgagtaaagagctagcagtggaa-tttttgggtcatatagtaagtg-------taagtttaattttgtaagaaactcaaactttttcaaagtggctgtctcaccagcaataaccaagaggttccagttgttctacatcctctccagcatttgttatttttgaaagccattctaaaaggcatatTACGATTTTTATTAGATCAGTATCAAAGATTTATATTATT-AAACTATGTAAACAggccacgcgtgagagttcatgcctataatctctgcactttgggaggccaaggcaggaggatcacttgagctcagaagttccagaccagcctggtcagcatagtgtgactctgtat------a------a----aaaaaaaaaaaaaaTCAGAAAAAAATCAGCTAggtcaggcacagtggctcatgcctgtaatcctagctacttgagaggtcagtgtgggaggatcagtttagtccaggagttcgagaccagcctggacaacattgggagacactg--tctagt------------------aaa-aaaaattagctgggtgtggt---------ggtgccctgtgatcccagctactaaggaggctgcggttggagagtcacttacttgagcacaggatgtggaggctgcagtgaaacatgatcacgccactacactgcagcctgggtgacagagcaagactccgtctcaaaaaaaGACTCCAGTCTGTGCAACAGAGCAAGACTTTCTCACAACAA i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8823009 794 - 16357246 ---tgttgagtggtggttcattgtatggatgtaccagaacatttggacagtttctagtttggggtgattat---------------------------aaatcactatta----atattcacatacaagttttgtgtgaacatagattttgcctacacttgggtaaa----tagcagtggaa---tttgggtcatatggtaagtg-------taagtttaattttgtagaaactcaaaactttttctaagtggctatctcagcagcaataaccaagacactccagttgttctatatcctcttcagcatttgtttcttttgaaagccattctaaaaggCAGATTTCAAATTTTATTAGGTCAATAT-GAGGGTTTATGTTATTAAAACTGTGTAAACAgaccaggcgcaatagatcatgactataatctcagtactttggtaggccaaggcaggaggatcacttgagctctgcagttcaagacaagcctgttcaacata----gactctgtac----caa------a----aaaaaat-------tcagaaaaa----aaTTAggtcaggcacagtggtttatgcttataatcccagcttcttgagagatcaacaggggaggattgtttgagcccaggagtttgagacctgcctggacagcattgggagaccatgtctctatttaaaaaaaaaaaaaaaaaaaa-aaaaaaaagctgggcatggtaattagctggatgccttgtaatctcagctacta--gaggctgaggtggaagggtcacttacttgagcacaggatgtggaggtcaccgtgaaccatgatcacgccaccacactccagtctgggcaacagagcaagacc-----------------------------------------ctgtctcaaaacaa i saiBol1.JH378157 I 3576 C 0 e canFam3.chr10 46063026 5009 - 69331447 I e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I a score=5418998.000000 s hg38.chr22_GL383582v2_alt 44182 821 + 162811 aaaaTGTAGACAGTAGTCCCAGTTGAGTCATG-ATTTTAGTTTTTCTTcttctct-----------------ttctttagttttttgtgcatctatt------atataattaattcatccaaa-ttttctgccaaaaatagaaatctc-tttg-cagtacatttagacagatcacgtcatttctccatatgatcattttcatggagacatacctcag-gagccctc-----catctccctgattccatctggatggggcaccctggaggtctgctgcc--cagctgtcctcctgagctccccattcacccttatgctcaggggctc-tccctgcctgttgtgctgggt--cccatgttatcttcttttctatttctcctttattttagtgaagtacaacctccgg--------ttgctt-cctgaggggtagtcttgagacatttatgtatccgaaaagacctcaattcatacttgcata-gcatttggctaggtatagaa-ttctagattggaaatattttctctc--agattttgaaggt----cttcattatcttatagcttcaaaggttggtgttgagaagtctgatgaatattgaattcctgaagctcagac-ttttt-------tctctctggaagtttttgggttcca--ctctgtcctcagtgttgtgaaatttcttgacaacaaaattggggctgggtccccttcattcattgtcatg---------aacacttggtgtttccttctctactggaaactcatgttcttcctctgtgagaacttgtcttgacaaaaaagaaacgtatttattagacatctttccttgcctcct-agtctgttgtctctgctgcctgtttcagaaacatctaaacaacaatttagctgt s panTro5.chr22 28799845 821 + 37823149 aaaaTGTAGACAGTAGTCCCAGTTGAGTCATG-ATTTTAGTTTTTCTTcttctct-----------------ttctttagttttttgtgcatctatt------atataattaattcatccaaa-ttttctgccaaaaatagaaatctc-tttg-cagtacatttagacagatcaggtcatttctccatatgatcattttcatggagacatacctcag-gagccctc-----catctccctgattccatctggatggggcaccctggaggtctgctgcc--cagctgtcctcccgagctccccattcacccttatgctcaggggctc-tccctgcctgttttgctgggt--cccatgttatcttcttttctatttctcctttattttagtgaagtacaacctccgg--------ttgctt-cctgaggggtagtcttgagacatttatgtatccgaaaagacctcaattcatacttgcata-gcatttggctaggtatagag-ttctagattggaaagattttctctc--agattttgaaggt----cttcattatcttatagcttcaaaggttggtgttgagaagtctgatgaatgttgaattcctgaagctcagac-ttttt-------tatctctggaagtttttaggttcca--ctctgtcctcagtgttgtgaaatttcttgacaacaaaattggggctgggtccccttcattcattgtcgtg---------aacacttggtgtttccttctctactggaaactcatgttcttcctctgtgagaacttgtcttgacaaaaaagaaacgcatttattagacatctttccttgcctcct-agtctgttgtctctgctgcctgtttcagaaacatctaaacaacaatttagctgt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41104496 820 + 50109623 aaaaTGTAGACAGTAGTCCCAGTTGAGTCATG-ATTTTAGTTTTTCTTcttctct-----------------ttctttagttttttgtgcatctatt------atataattaattcatccaaa-ttttctgccaaaaatagaaatctc-tttg-cagtacatttagacagatcaggtcatttctccatatgatcattttcatggagacatacctcag-gagccctc-----catctccctgattccatctggatggggcaccctggaggtctgctgcc--cagctgtcctcccgagctccccattcacccttatgctcaggggctc-tccctgcctgttgtgctgggt--cccatgttatcttcttttctatttctcctttattttagtgaagtacaacctccgg--------ttgctt-cctgaggggtagtcttgagacatttatgtatccgaaaagacctcaattcatacttgcata-gcatttggctaggtatagag-ttctagattggaaagattttctctc--agattttgaaggt----cttcattatcttatagcttcaaaggtgggtgttgagaagtctgatgaatgttgaattcctgaagctcagac-ttttt-------tatctctggaagtttttaggttcca--ctctgtcctcagtgttgtgaaatttcttgacaacaaaattggggctgggtccccttcattcattgtcgtg---------aacacttggtgtttccttctctactggaaactcatgttcttcctctgtgagaacttgtcttgac-aaaaagaaacgcatttattagacatctttccttgcctcct-agtctgttgtctctgctgcctgtttcagaaacatctaaacaacaatttagctgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3077016 809 + 4464012 aaaaTGTAGACAGTAGT-CCAGTTGAGTCATG-ATTTTAGTTTT--cttttctct-----------------ttctttagttttttgtgca--tatt------atataa-taattcatccaaatttttttgccaaaaatagaaatctc-tttgccagtacatttagacagatcaggtcatttctccatatgatcattttcatggagacatatctcag-gagccctc-----catctccctgattccatctggat-gggcaccctggaggtctgctggc--ccagtgtcctcctgagctccccattcacccttatgctcaggggctc-tccctg-ctgttgtgctgggt---ccatgttatcttcttttctatttctcctttattttagtgaagtacaa-ctccag--------ttgcttccctgaggggtagtcttgagacatttat-tatccg-aaagacctcaattcatacttgcata-gcatttggctaggtatagagtttctagattggaaatattttctctc--aga-tttgaaggt----cttcattatc-tatagcttcaaaggttggtgttgagaagtctgatgaatgttgaattcctgaagctcagactttttt-------tatctctggaagtttttaggttccg--ctctgtcctcagtgttgtgaaatttcttgacaacaaaattggggctgggtccccttcattca-tgtcgtg---------aacacttggtgtttccttctctactggaaactcatgtttttcctctgtgagaacttgtcttgac-aaaaagaaacgtatttattagacatctttccctgcctcct-agtctgttgtctctgctgcctgtttcagaaacatctaaacaac-atttagctgt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106603959 818 - 115148730 aaaaTGTAGACAGTAGTCCCAGTTGAGTCATG-ATTTTAgtttt---tcttctct-----------------ttctttagttttctgtgcatctatt------atataattaattcatccaaa-ttttctgccaaaaatagaaatctc-tttg-caatacatttagacagatcaggtcatttctccatatgatcattttcatggagacatatgtcag-gagccctc-----catctccttgattccatctggatggagcaccctggaggtctgctgcc--cagctgtcctcctgagctccccattcacccttatgctcaggggctc-tccctgcctgttgtgctgggt--cccatgttatcttcttttctatttctcctttattttagtgaagtacaacctccgg--------ttgctt-cctgaggggtagtcttgagacatttatgtatccgaaaggacctcaattcatacttgcata-gcatttggctaggtatagaa-ttctagattggaaatattttctctc--agattttgaaggt----cttcattatcttatagcttcaaaggttggtgttgagaagtctgatgaatgttgaattcctgaagctcagac-ttttt-------tatctctggaagtttttaggttccg--ctccgtcctcagtgttgtgaattttcttgacaacaaaattggggctgggtccccttcattcattgttgtg---------aacacttggtgtttccttctctactggaaactcatgttcttcctctgtgagaacttgtcttgacaaaaaagaaacgtatttattagacatctctccctgcctcct-agtctgttgtctctgctgcctctttcagaaacatctaaacaataatttagctgt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84228007 814 + 92844088 AAAATGTAGACAGTAGTCCCAGTTAAGTCATG-ATTTTGgtttt---tcttctct-----------------ttctttagttttctgtgcatctatt------atataattcattcattcaga-ttttctgccaaaaatagaaatctcttttg-caatacatttagacagatcaggtcatttgtccatatgatcattttcatggagacgtatctcag-gagccctc-----catctccctgattccatctggatggggcaccctggaggtctgctgcc--tagctgtcctcctgagctccccattcacccttatgctcaggggctc-tccctgcctgttgtgctgggt--cccatgttatcttcttttccgtttctcc----ttttagtaaagtacaacctccag--------ttgctt-cctgaggggtagttttgagac----atgtatctgaaaagatctcaattcatacttgcata-gcatttggctaggtatagaa-ttctagattggaaatattttctctc--agattttgaaggt----cttcattatcttatagcttcaaaggttggtgtggagaagtctgatgaatgttgaattcctaaagctcagac-ttttt-tgtttgtatctctgcaagtgtttaggttccg--ctctgtcctcggtgctgtgaaatttcttgacaacaaaatcaggggcgagtccccttcattcattgtcctg---------aacagttgatgtttccttctctactggaaactcatgttcttcatctctgagaacttgtcttgacaaaaaagaaatgtatttatttgacatctctccctgcctcct-agtctgttgtctctgctgcctctttcagaaacatcta---aacaatttagctgt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87573205 814 - 96509753 AAAATGTAGACAGTAGTCCCAGTTAAGTCATG-ATTTTGgtttt---tcttctct-----------------ttctttagttttctgtgcatctatt------atataattcattcattcaga-ttttctgccaaaaatagaaatctcttttg-caatacatttagacagatcaggtcatttgtccatatgatcattttcatggagacgtatctcag-gagccctc-----catctccctgattccatctggatggggcaccctggaggtctgctgcc--tagctgtcctcctgagctccccattcacccttatgctcaggggctc-tccctgcctgttgtgctgggt--cccatgttatcttcttttccgtttctcc----ttttagtaaagtacaacctccag--------ttgctt-cctgaggggtagtcttgagac----atgtatctgataagatctcaattcatacttgcata-gcatttggctaggtatagaa-ttctagattggaaatattttctctc--agattttgaaggt----cttcattatcttatagcttcaaaggttggtgtggagaagtctgatgaatgttgaattcctaaagctcagac-ttttt-tgtttgtatctctgcaagtgtttaggttccg--ctctgtcctcggtgctgtgaaatttcttgacaacaaaatcaggggcgagtccccttcattcattgtcctg---------aacagttgatgtttccttctctactggaaactcatgttcttcatctctgagaacttgtcttgacaaaaaagaaatgtatttatttgacatctctccctgcctcct-agtctgttgtctctgctgcctctttcagaaacatcta---aacaatttagctgt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7065246 814 - 13098629 AAAATGTAGACAGTAGTCCCAGTTAAGTCATG-ATTTTGgtttt---tcttctct-----------------ttctttagttttctgtgcatgtatt------atataattaattcattcaga-ttttctgccaaaaatagaaatctcttttg-caatacatttagacagatcaggtcatttgtccatatgatcattttcatggagacatatctcag-gagccctc-----catctccctgattccatctggatggggcaccctggaggtctgctgcc--tagctgtcctcctaagctccccattcacccttatgctcaggggctc-tccctgcctgttgtgctgggt--cccatgttatcttcttttccgtttctcc----ttttagtaaagtacaacctccag--------ttgctt-cctgaggggtagtcttgagac----atgtatctgaaaagatctcaattcatacttgcata-gcatttggctaggtatagaa-ttctagattggaaatattttctctc--agattttgaaggt----cttcattatcttacagcttcaaaggttggtgtggagaagtctgatgaatgttgaattcctaaagctcagac-ttttt-tgtttgtatctctggaagtgtttaggttccg--ctctgtcctcggtgctgtgaaatttcttgacaacaaaatcaggggcgagtccccttcattcattgtcctg---------aacagttgatgtttccttctctactggaaactcatgttcttcatctctgagaacttgtcttgacaaaaaagaaatgtatttatttgacatctctccctgcctcct-agtctgttgtctctgctgcctctttcagaaacatcta---aacaatttagctgt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4032530 814 - 4483953 AAAATGTAGACAGTAGTCCCGGTTAAGTCATG-ATTTTGgtttt---tcttttct-----------------ttctttagttttctgtgcatctatt------atataattaattcattcaga-ttttctgccaaaaatagaaatctcttttg-caatacatttagacagatcaggtcatttgtccatatgatcgttttcatggagacatatctcag-gagccctc-----catctccctgattccatctggatggggcaccctggaggtctgctgcc--tagctgtcctcctgagctccccattcacccttatgctcaggggctc-tccctgcctgttgtgctgggt--cccatgttatcttcttttccgtttctcc----ttttagtaaagtacaacctccag--------ttgctt-cctgaggggtagtcttgagac----atgtatctgaaaagatctcaattcatacttgcata-gcatttggctaggtatagaa-ttctagattggaaatattttctctc--agattttgaaggt----cttcattatcttatagcttcaaaggttggtgttgagaagtctgatgaatgttgaattcctaaagctcagac-ttttt-tgtttgtatctctggaagtttttaggttccg--ctctgtcctcggtgctgtgaaatttcttgacaacaaaatcaagggcgagtcccctttattcattgtcctg---------aacacttgatgtttccttctctactggaaactcatgttcttcgtctctgagaacttgtcttgacaaaaaagaaatgtatgtatttgacatctctccctgccttct-agtctgttgtctctgctgcctctttcagaaacatcta---aacaatttagctgt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24662564 814 + 33263144 AAAATGTAGACAGTAGTCCCAGTTAAGTCATA-ATTTTGGTTTT---tcttcttc------------------tctttagttttctgtgcatctatt------atataattaattcattcaga-ttttctgccaaaaatagaaatctcttttg-caatacattt-gacagatcaggtcatttgtccatatgatcattttcatggagacatatctcag-gagccctc-----catctccctgattccatctggatggggcaccctggaggtctgctgcctatagctgtcctcctgagctccccattcacccttatgctcaggggctc-tccctgcctgttgtgctgggt--cccatgttatcttcttttccgtttctcc----ttttagtaaagtacaacctccag--------ttgctt-cctgaggggtagtcttgagac----atgtatctgaaaagatctcaattcatacttgcata-gcatttggctaggtatagaa-ttctagattggaaatattttctctc--agattttgaaggt----cttcattatcttatagcttcaaaggttggtgttgagaagtctgatgaatgttgaattcctaaagctcagac-ttttt-tgtttgtatctctggaagtttttaggttccg--ctctgtcctcggtgctgtgaaatttcttgacaacaaaatcaggggcgagtccccttcattcattgtcctg---------aacacttgatgtttccttctctactggaaactcatgttcttcatttctgagaacttgtcttgacaaaaaagaaatgtatttatttgacatctctccctgcctcct-agtctgttgtctctgctgcctctttcagaaacatcta---aacaatttagctgt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13926769 817 - 14338769 AAAATGTAGACAGTAGTCCCGGTTAAGTCATG-ATTTTGGTTTT---TCTTcttctc--------------tttctttagttttctgtgcatctatt------atataattaattcattcaga-ttttctgccaaaaatagaaatctcttttg-caatacatttagacagatcaggtcatttgtccatatgatcgttttcatggagacatatctcag-gagccctc-----catctccctgattccatctggatggggcaccctggaggtctgctgcc--tagctgtgctcctgagctcctcattcacccttatgctcaggggctc-tccctgcctgttgtgctgggt--cccatgttatcttcttttccgtttctcc----ttttagtaaagtacaacctccag--------ttgctt-cctgaggggtagtcttgagac----atgtatctgaaaagatctcaattcatacttgcata-gcatttggctaggtatagaa-ttctagattggaaatattttctctc--agattttgaaggt----cttcattatcttatagcttcaaaggttggtgttgagaagtctgatgaatgttgaattcctaaagctcagac-ttttt-tgtttgtatctctggaagtttttaggttccg--ctctgtcctcggtgctgtgaaatttcttgacaacaaaatcaggggcgagtcccctttattcattgtcctg---------aacacttgatgtttccttctctactggaaactcatgttcttcatctctgagaacttgtcttgacaaaaaagaaatgtatgtatttgacatctctccctgcctcct-agtctgttgtctctgctgcctctttcagaaacatcta---aacaatttagctgt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 880519 829 + 1946073 AAAATGTAGACAGTAGTCCCAGTTAAGTCATG-ATTTTGGTTTT---TCTTcttctc--------------tttctttagttttctgtgcatctatt------atataattaattcattcagg-ttttctgccaaaaatagaaatctcttttg-caatacatttagacagatcaggtcatttgtccatatgatcattttcatggagacatatctcag-gagccctc-----catctccctgattccatctggatggggcaccctggaggtctgctgcc--tagctgtcctcgtgagctccccattcacccttatcctcaggggctc-tccctgcctgttgtgctgggt--cccatgttatcttcttttccgtttctcc----ttttagtaaagtacaacctccag--------ttgctt-cctgaggggtagtcttgagac----atgtatctgaaaagatctcagttcgcacttgcata-gcatttggctaggtatagaa-ttctagattggaaatattttccctc--agattttgaaggt----cttcattatcttatagcttcaaaggttggtgttgagaagtctgacgaatgttgaattcctaaagctcagac-tcttt-tgtttgtatctctggaagattttaggttccg--ctctgtcctcggtgttgtgaaatttcttgacaacaaaattaggggcgagtccccttcattcattgtcctgaatgaaggaaacacttggtgtttccttctctactggaaactcatgttcttcatctctgagaacttgtcttgacaaaaaagaaatgtatttatttgacatctctccctacctcct-agtctgttgtctctgctgcctctttcagaaacatctaaacaacaatttagctgt i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8823803 795 - 16357246 aaaaTGTAAGCAGTAGTCCCATTTGAATCATG-ATTTTGGTTTT---TATTCTtttta------------atttcttttgtttttgctgtatctatt------atataattaattcatccaag-ttttctgccaaaaacagaaatatc-tttg-taatacgtttagacagatcaggccatttatccatatgatcattttcatggagacatatctcagagagccctccatctcatctccctgattctaagtagacagggtgcccttgaggtctgctgcc--cagctgtcctgctgagctctccattcactcttaggctggggggctcttccctgcctgtagtgcttggt--cccatgttatctttt-----atttcctcttaattttagtggagtacagcctccag--------ttgctt-cctgaggggttgtcctaagacatt-ttgtatccgaaaaggtcttaattcatacttgcata-gcatttggctaggtatagaa-ttctagattggaaatattt--cctc--agattttaaaggt----cctcattatcttatagcttcaaaggttggtgttggaaagtttgatgaacactgaattcctaaagctcagac-ttttt--gtttataactctggaagtttttaggttctattctttgtcctccatgttgtgcaatttattgacaacaaaatctgggctggatccccttcatccattgtcctg---------aactcttggtgtttctttctc--------------------------tgagaaattGTCTTGACAAAAAAGAAAC----TTATTTGA-ATCTCTCCCTGTCCCCT-AGTCTGTTTTCTCTGCTGCCTCTTTCAGAAACATCCA---AACAATTTAGCTGT i saiBol1.JH378157 C 0 M 1406 s canFam3.chr10 46068035 791 - 69331447 aaactgagaatagtattccacgctgagtcacgtaccgtggttac---tcttcttggcgtgtcattttgtttttgcctcttttttctgttcgcttcctctctacgtacaattaatatacccagg-cgctctgccaaaaatatcaatccc-cttg-cagtagatttacacaaattaggt-gtttaatggaatgatggttttcacagag-cgtatctcac-ggggcagc-----cctcccactgttcccatagggacagga----------------tgcc--cagctgccct-----------------------------gggacct-ccctttctcggcaatctggggagcccctgtca---------------ctcctttattttgatggaatgcaaccgccaggggaacctctgctt-cctgaggggtagtcttcagatatt-acatgtctgccatggtcttaattcatatgcgactacgagtttgggtaggtatagaa-ttctaggctagaaatattttttctcatagagtttgaggatccaacttccttgtcttctggcttcaaagactttcaaaaagaagtctgatgaaagttgaattcctaaaa--caggc-tttttttctttgtat-tttagaagtttttgggttcct-----tgtcctgagggttctgaaatgtattgatgacaaaacccggggtagatctccctcatccattgtcctg---------gacacttggtgattccttctcttctggaaactcacatccctcatctttgggaaatggtcttgataaaaaagggacatatttatctggtatctctccctgccacttcaatctgctgtctctgtttcctc--tcagaaagctcta-----ggagttcgcagt i canFam3.chr10 I 5009 C 0 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e calJac3.chrUn_GL286373 1908214 600 - 2117846 I a score=172410.000000 s hg38.chr22_GL383582v2_alt 45003 24 + 162811 tggagctcctgacctcttctctgt s panTro5.chr22 28800666 24 + 37823149 tggagctcctgacctcttctctgt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41105316 24 + 50109623 tggagctcctgacctcttctctgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3077825 24 + 4464012 tggagctcctgacctcttctctgt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106604777 24 - 115148730 tggagctcctgacctcttctctgt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84228821 24 + 92844088 tggagctcctgacctcttctctgt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87574019 24 - 96509753 tggagctcctgacctcttctctgt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7066060 24 - 13098629 tggagctcctgacctcttctctgt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4033344 24 - 4483953 tggagctcctgacctcttccctgt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24663378 24 + 33263144 tggagctcctgacctcttctctgt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13927586 24 - 14338769 tgaagctcctgacctcttctctgt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 881348 24 + 1946073 tggagctcctgacctcttctctgt i colAng1.NW_012115588v1 C 0 C 0 s canFam3.chr10 46068826 24 - 69331447 gggagctcctgatctcttctctgt i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36253721 1542 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8824598 1406 - 16357246 M e calJac3.chrUn_GL286373 1908214 600 - 2117846 I a score=427130.000000 s hg38.chr22_GL383582v2_alt 45027 66 + 162811 tctttct--ggaaa--------atatttttttcaagtttagcttctatactttgattagattttgcattcctatta s panTro5.chr22 28800690 66 + 37823149 cctttct--ggaaa--------atatttttttcaagtttagcttctatactttgattagattttgcattcctatta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41105340 66 + 50109623 cctttct--ggaaa--------atatttttttcaagtttagcttctatactttgattagattttgcattcctatta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3077849 66 + 4464012 tctttct--ggaaa--------atatttttttcaagtttagcttctatactttgattagattttgcattcctatta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106604801 66 - 115148730 tctttct--ggaat--------atatttttttcaagtttagcttctatactttgattagattttgcattcttatta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84228845 66 + 92844088 tctttct--ggaaa--------atattgttttcaagtttagcttgtatactttgattagattttgcattcctatga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87574043 66 - 96509753 tctttct--ggaaa--------atatttttttcaagtttagcttgtatactttgattagattttgcattcctatta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7066084 66 - 13098629 tctttct--ggaaa--------atatttttttcaagtttagcttgtatactttgattagattttgcattcctatta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4033368 66 - 4483953 tctttct--ggaaa--------atatttttttcaagtttagcttgtatactttgattagattttgcattcctatta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24663402 66 + 33263144 tctttct--GGAAA--------ATATttttttcaagtttagcttgtattctttgattacattttacattcctatta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13927610 66 - 14338769 tctttct--GGAAA--------ATATTTTTTTCAAGTTTAGCTTGTACACTTTGATTAGATTTTGCATTCCTATTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 881372 66 + 1946073 tctttct--ggaaa--------atatttttttcaagtttagcttctatactttgattagattttgcattcctatta i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36255263 69 - 42659167 TCTTTCT--AAAGACATCAGTTATAGTCttttttaattt---ttaaattttttcatt--attttaaaatCATACTT i otoGar3.GL873526 I 1542 C 0 s canFam3.chr10 46068850 68 - 69331447 tctttctcgggaaa--------atttttttttcgactttaccttctacatttttattggatttttccctcccagta i canFam3.chr10 C 0 C 0 e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8824598 1406 - 16357246 M e calJac3.chrUn_GL286373 1908214 600 - 2117846 I a score=82641.000000 s hg38.chr22_GL383582v2_alt 45093 20 + 162811 ttata----ttttttatttttaag s panTro5.chr22 28800756 20 + 37823149 ttata----ttttttatttttaag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41105406 20 + 50109623 ttata----ttttttatttttaag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3077915 21 + 4464012 ttatat---ttttttatttttaag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106604867 22 - 115148730 ttatat-a-tatattttttttaag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84228911 21 + 92844088 ttatgt---tatttttattttaag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87574109 21 - 96509753 ttatgt---tatttttattttaag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7066150 21 - 13098629 ttatgt---tatttttattttaag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4033434 21 - 4483953 ttatgt---tatttttattttaag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24663468 16 + 33263144 ttatgt---tat-----ttttaag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13927676 21 - 14338769 TTATGt---tatttttattttaag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 881438 21 + 1946073 ttatgt---tatttttattttaag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1908814 20 - 2117846 tttta----ttttctgtttttaag i calJac3.chrUn_GL286373 I 600 C 0 s otoGar3.GL873526 36255332 17 - 42659167 -------TTTTGTtttgttttgag i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46068918 24 - 69331447 ttctatcatatttttgtttttaag i canFam3.chr10 C 0 I 149 e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8824598 1406 - 16357246 M a score=1111346.000000 s hg38.chr22_GL383582v2_alt 45113 167 + 162811 gcaaggtctttctctgttgcccaggctggagtgcagtggcacgatcacagttcactgcagctt--t--gttcctggactcaagtgatcctcccacctcagcctcccaagcagctggaactacaggtgtgtgccaccacacccagccagtattttaattttttgtagagatg- s panTro5.chr22 28800776 167 + 37823149 gcaaggtctttctctgttgcccaggctggagtgcagtggcacgatcacagttcactgcagctt--t--gttcctgcactcaagtgatcctcccacctcagcctcccaagcagccggaactacaggtgtgtgccaccacacccagccaatattttaattttttgtagagatg- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41105426 167 + 50109623 gcaaggtctttctctgttgcccaggctggagtgcagtggcacgatcacagttcactgcagctt--t--gttcctggactcaagtgatcctcccacctcagcctcccaagcagccggaactacaggtgtgtgccaccacacccagccaatattttaattttttgtagagatg- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3077936 166 + 4464012 gcaaggtc-ttctctgttgcccaggctggagtgcagtggcacgatcacagttcactgcagcct--t--gttcctggactcaagtgatcctcccacctcagcctcccaagcagctggaactacaggtgtgtgccaccacacccagccagtattttaactttttgtagagatg- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106604889 167 - 115148730 gcaaggtctttttctgttgcccaggctggagtgcagtggcacgatcacagttcactgcagcct--t--gttcctggactcaagtgatcctcccacctcagcctcccaagcagctggaactacaggtgtgtgccacaacacccagccagtattttaattttttgtagagatg- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84228932 167 + 92844088 gcaaggtctctttctgttgcccaggctggagtgcagtggcaggatcatagttcactgcagcct--t--gttcccagactcaagtgatcctcctgcctcaacctcccaagcagctgaaactacaggtgtgtgccaccacacccagctagtatttcaattttttgtacagaca- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87574130 167 - 96509753 gcaaggtctctttctgttgcccaggctggagtgcagtggcaggatcatagttcactgcagcct--t--gttcccagactcaagtgatcctcctgcctcaacctcccaagcagctgaaactacaggtgtgtgccaccacacccagctagtatttcaattttttgtacagaca- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7066171 167 - 13098629 gcaaggtctctttctgttgcccaggctggagtgcagtggcaggatcatagttcactgcagcct--t--gttcccagactcaagtgatcctcctgcctcaacctcccaagcagctgaaactacaggtgtgtgccaccacacccagctagtatttcaattttttgtacagaca- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4033455 167 - 4483953 gcaaggtctctttctgttgcccaggctggagtgcagtggtaggatcatagttcactgcagcct--t--gttcccagactcaagtgatcctcctgcctcaacctcccaagcagctgaaactacaggtgtgtgccaccacacccagctagtatttcaattttttgtgcagaca- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24663484 167 + 33263144 gcaaggtctctttctgttgcccaggctggagtgcagtggcaggatcatagttcactgcagcct--t--gttcccagactcaagtgatcctcctgcctcaacctcccaagcagctgaaactacaggtgtgtgccaccacacccagctagtatttcaattttttgtacagaca- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13927697 167 - 14338769 gcaaggtctctttctgttgcccaggctggagtgcagtggcaggatcatagttcactgcagcct--t--gttcccagactcaagtgatcctcctgcctcaacctccgaagcagctgaaactacaggtgtgtgccaccacactcagctagtatttcaattttttgtgcagaca- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 881459 167 + 1946073 gcaaggtctctctctgttgcctaggctggagtgcagtggcaggatcatagttcactgcagcct--t--gttcccagactcaagtgatcctcctgcctcaacctcccaagcagctgaaactacaggtgtgtaccaccacacccggctagtattttaattttttgtacagaca- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1908834 165 - 2117846 gcagagtc----tctgttgcccaggctggagtacagtggcataatcatagctcactgcagcctcat--actcccagactcaagtgatcctcccacctcagcctcccaagcagctggaactacaggcgtgtgcccccacacctggctcatattttaattttttgtagagaca- i calJac3.chrUn_GL286373 C 0 C 0 s otoGar3.GL873526 36255349 128 - 42659167 acagagtctcaagctgtcaccctaggtagagtgt-gtggt---gtcatagctcacagcaacct--ccaagtcttgggctcaagcaatcctcttgcctcagtttttt--------------------------------------ttttttttctattttttagtagagacag i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46068942 149 - 69331447 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1279575 21599 - 1807191 I e saiBol1.JH378157 8824598 1406 - 16357246 M a score=503774.000000 s hg38.chr22_GL383582v2_alt 45280 66 + 162811 gggtctccttaggtggcccaggctggtgttgaattcctaggctcaaacaatcctcctgccttagcc s panTro5.chr22 28800943 66 + 37823149 gggtctccttaggtggcccaggctggtgttgaactcctaggctcaagcaatcctcctgccttagcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41105593 66 + 50109623 gggtctccttaggtggcccaggctggtgttgaactcctaggctcaagcaatcctcctgccttagcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3078102 66 + 4464012 gggtctccttaggaggcccaggctggtgttgaactcctaggctcaagcaatcctcctgccttagcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106605056 66 - 115148730 gggtctccttaggtggcccaggctagtgttgaactcctaggctcaagcaatcctcctgccttagcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84229099 63 + 92844088 gggt---cttaggtggcccagactgatgttgaactcctaggctcaaacagtcctcctgccttagcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87574297 63 - 96509753 gggt---cttaggtggcccagactgatgttgaactcctaggctcaaacagtcctcctgccttagcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7066338 63 - 13098629 gggt---cttaggtggcccagactgatgttgaactcctaggctcaaacagtcctcctgccttagcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4033622 63 - 4483953 gggt---cttaggtggcccagactgatgttgaactcctaggctcaaacagtcctcctgccttagcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24663651 63 + 33263144 gggt---cttaggtggcccagactgatattgaactcctaggctcaaacagtcctcctgccttagcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13927864 63 - 14338769 ggat---tttaggtgacccagactgatgttgaactcctaggctcaaacagtcctcctgccttagcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 881626 63 + 1946073 gggt---cttaggtggcctagactggtgttgaactcctaggctcaaacaatccttctgccttagcc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1908999 66 - 2117846 gggtcttcttatgttgctcaggctggtcttgaactcctagactcaagcagccctcctgccttatcc i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1301174 66 - 1807191 gggtcttcttatgttgctcaggctggtcttgaattcctagactcaagcaaccctcctgccttagcc i cebCap1.NW_016107750v1 I 21599 C 0 s otoGar3.GL873526 36255477 64 - 42659167 gggtctcacta--ttgctcaggctgatcttgaactcgtgagttcaagcaatctacctgccttggcc i otoGar3.GL873526 C 0 C 0 e canFam3.chr10 46068942 149 - 69331447 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8824598 1406 - 16357246 M a score=586316.000000 s hg38.chr22_GL383582v2_alt 45346 74 + 162811 tcccaaaatgctgggattacaggcatgagc--taaggcacccag------actatatttttgtcaagaattagtgg--------tggtgg s panTro5.chr22 28801009 74 + 37823149 tcccaaaatgctgggattacaggcatgagc--taaggcacccag------actatatttttgtcaagaattagtgg--------tggtgg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41105659 74 + 50109623 tcccaaaatgctgggattacaggcatgagc--taaggcacccag------actatatttttgtcaagaattagtgg--------tggtgg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3078168 73 + 4464012 tcccaaaatgctgggattacaggcatgagc--taaggca-ccag------actatatttttgtcaagaattagtgg--------tggtgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106605122 74 - 115148730 tcccaaaatgctgggattacaggcatgagc--taaggcacccag------actatatttttgtcaagaattagtgg--------tggtgg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84229162 74 + 92844088 taccaaaatgctgggattacaggcatgagc--tgcagcatctag------actatatttttgtcaagaattagtgg--------tggtgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87574360 74 - 96509753 taccaaaatgctgggattacaggcatgagc--tgcggcatctag------actatatttttgtcaagaattagtgg--------tggtgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7066401 74 - 13098629 taccaaaatgctgggattacaggcatgagc--tgcggcatctag------actatatttttgtcaagaattagtgg--------tggtgg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4033685 74 - 4483953 taccaaaatgctgggattacaggcatgagc--tgcggcacctag------actatatttttgtcaagaattagtgg--------tggtgg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24663714 74 + 33263144 taccaaaatgctgggattacaggcgtgagc--tgcggcacctag------actatatttttgtcaagaattagtgg--------tggtgg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13927927 74 - 14338769 taccaaaatgctgggattacaggcatgagc--tgcggcaccTAG------ACTATATTTTTGTCAAGAATTAGTGG--------TGGTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 881689 74 + 1946073 taccaaaatgctgggattacaggcatgagc--tacggcacccag------actatatttttgtcaagacttagtgg--------tggtgg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1909065 74 - 2117846 tcccaaaatgctgggattacaggcatgagc--tactgtaccgag------actatatttttatcaagaattagtgg--------tggtga i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1301240 74 - 1807191 tcccaaaatgctgggattacaggcatgagt--tactgtaccGAG------ACTATATTTTTATCAATAATTAGTGG--------TGGTGA i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36255541 90 - 42659167 tctcagagtactaggattacaggcatgacccacacagtgcccagccCTAAATTATAGCTTTTAAAAAGATTTTTAggctggacctggtgg i otoGar3.GL873526 C 0 I 506 s canFam3.chr10 46069091 64 - 69331447 tcccaggaccctgggat------catgatc--tgagcca---aa------ggcagatgtttaaccc-actgagtca--------cccagg i canFam3.chr10 I 149 C 0 e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8824598 1406 - 16357246 M a score=399977.000000 s hg38.chr22_GL383582v2_alt 45420 51 + 162811 gtgtttgaacatttttattttagaccctcctattcttatttcatgaatgca s panTro5.chr22 28801083 51 + 37823149 gtgtttgaacatttttattttagaccctcctattcttatttcatgaatgca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41105733 51 + 50109623 gtgtttgaacatttttattttagaccctcctattcttatttcatgaatgca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3078241 50 + 4464012 gtgtttgaacatttttattttagagcctccta-tcttatttcatgaatgca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106605196 51 - 115148730 gtgtttgaacatttttattttagagcctcctattcttatttcatgaatgca i nomLeu3.chr7b C 0 I 314 s rheMac8.chr10 84229236 51 + 92844088 gtgtttgaacatttttattttagagcctcctattcttatttcatgaatgga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87574434 51 - 96509753 gtgtttgaacatttttattttagagcctcctattcttatttcatgaatgga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7066475 51 - 13098629 gtgtttgaacatttttattttagagcctcctattcttatttcatgaatgga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4033759 51 - 4483953 gtgtttgaacatttttattttagagcctcctattcttatttcatgaatgga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24663788 51 + 33263144 gtgtttgaacatttttattttagaacctcctattcttatttcatgaatgga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928001 51 - 14338769 GTGTTTGAACATTTTTATTTGAGAGCCTCCTATTCTTATTTCATGAATGGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 881763 51 + 1946073 gtgtttgaacatttttattttagagcctcctattcttattccatgaatgga i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1909139 50 - 2117846 gtgtgcgaaca-ttttattttagaacctcctgttctcatttcatgaatgta i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1301314 50 - 1807191 GGGTGTGAACA-TTTTATTTTAGAACCTCCTGTTCCTATTTCATGAATATA i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46069155 48 - 69331447 ctccctgaacatctctgttttagag---tctattcttgtttcatgaatgct i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36255631 506 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8824598 1406 - 16357246 M a score=202185.000000 s hg38.chr22_GL383582v2_alt 45471 23 + 162811 aagttttatctttctaaagatat s panTro5.chr22 28801134 23 + 37823149 aagttttatctttctaaagatat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41105784 23 + 50109623 aagttttatctttctaaagatat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3078291 23 + 4464012 aagttttatctttctgaagatat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106605561 23 - 115148730 aagttttatctttctaaagatat i nomLeu3.chr7b I 314 C 0 s rheMac8.chr10 84229287 23 + 92844088 aagttttatctttctaaagatat i rheMac8.chr10 C 0 I 330 s macFas5.chr10 87574485 23 - 96509753 aagttttatctttctaaagatat i macFas5.chr10 C 0 I 331 s macNem1.NW_012012688v1 7066526 23 - 13098629 aagttttatctttctaaagatat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4033810 23 - 4483953 aagttttatctttctaaagatat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24663839 23 + 33263144 aagttttatctttctaaagatat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928052 21 - 14338769 AAGTTTTATCTTTCTAAAGAT-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 881814 23 + 1946073 aagttttatctttctaaagatat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1909189 23 - 2117846 aagttttatctttctgaagatgc i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1301364 23 - 1807191 AAGTTTTATCTTTCTAAAGATAC i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46069203 23 - 69331447 aagttttaactttctaaagacat i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36255631 506 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8824598 1406 - 16357246 M a score=33943.000000 s hg38.chr22_GL383582v2_alt 45494 4 + 162811 caat s panTro5.chr22 28801157 4 + 37823149 caat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41105807 4 + 50109623 caat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3078314 4 + 4464012 caat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106605584 4 - 115148730 caat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84229640 4 + 92844088 CAAT i rheMac8.chr10 I 330 C 0 s macFas5.chr10 87574839 4 - 96509753 CAAT i macFas5.chr10 I 331 C 0 s macNem1.NW_012012688v1 7066549 4 - 13098629 caat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4033833 4 - 4483953 caat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24663862 4 + 33263144 caat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928073 2 - 14338769 --AT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 881837 4 + 1946073 caat i colAng1.NW_012115588v1 C 0 I 311 s calJac3.chrUn_GL286373 1909212 4 - 2117846 caat i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1301387 4 - 1807191 CAAT i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46069226 4 - 69331447 cagt i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36255631 506 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8824598 1406 - 16357246 M a score=73017.000000 s hg38.chr22_GL383582v2_alt 45498 15 + 162811 tatA--GA--ttttttttt s panTro5.chr22 28801161 17 + 37823149 tatatAGA--ttttttttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41105811 17 + 50109623 tatatAGA--ttttttttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3078318 15 + 4464012 tatA--GA--ttttttttt i gorGor5.CYUI01015375v1 C 0 I 42321 s nomLeu3.chr7b 106605588 14 - 115148730 tatA--GA--tttttttt- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84229644 15 + 92844088 TATA--GA--tttttttaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87574843 15 - 96509753 TATA--GA--tttttttaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7066553 15 - 13098629 tatA--GA--tttttttaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4033837 15 - 4483953 tatA--GA--tttttttaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24663866 15 + 33263144 tata--ga--tttttttaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928075 15 - 14338769 TATA--GA--tttttttaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882152 17 + 1946073 TATA--GAttttttttttt i colAng1.NW_012115588v1 I 311 C 0 s calJac3.chrUn_GL286373 1909216 14 - 2117846 tatA--GA--tttttttt- i calJac3.chrUn_GL286373 C 0 I 5 s cebCap1.NW_016107750v1 1301391 15 - 1807191 TATA--GA--ttttttttt i cebCap1.NW_016107750v1 C 0 I 6 s canFam3.chr10 46069230 8 - 69331447 ------ta--ttgttt--- i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36255631 506 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8824598 1406 - 16357246 M a score=115129.000000 s hg38.chr22_GL383582v2_alt 45513 23 + 162811 taa-gacagtttcactcttgttga s panTro5.chr22 28801178 24 + 37823149 taaagacagtttcactcttgttga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41105828 24 + 50109623 taaagacagtttcactcttgttga i panPan2.chr22 C 0 C 0 s nomLeu3.chr7b 106605602 22 - 115148730 --aagagagtttgactcttgttga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84229659 23 + 92844088 -aaagacagtttcactcttgttga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87574858 23 - 96509753 -aaagacagtttcactcttgttga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7066568 23 - 13098629 -aaagacagtttcactcttgttga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4033852 23 - 4483953 -aaagacagtttcactcttgttga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24663881 23 + 33263144 -aaagacagtttcactcttgttga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928090 23 - 14338769 -aaagacagtttcactctcgttga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882169 23 + 1946073 -aaagacagtttcactcttgttga i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1909235 23 - 2117846 -tgagagtgtttcactcttaatgc i calJac3.chrUn_GL286373 I 5 C 0 s cebCap1.NW_016107750v1 1301412 23 - 1807191 -tgagagtgtttcactcttaatgc i cebCap1.NW_016107750v1 I 6 C 0 s canFam3.chr10 46069238 12 - 69331447 -------ACTTTAACTTTT----- i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36255631 506 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8824598 1406 - 16357246 M e gorGor5.CYUI01015375v1 3078333 42321 + 4464012 I a score=1610832.000000 s hg38.chr22_GL383582v2_alt 45536 241 + 162811 ccaggc---------------------tggagtg------------caatgatgcgatctcggctcactgcagcctctgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacccaccaccacgcccagctaattttttgtatttttagtagagacgggg-tttcaccatgttggccaggctggtctcgaacatct-gacctcaggtgatccacccatctcggcctcccaaagtgctgggattacaggcg s panTro5.chr22 28801202 241 + 37823149 ccaggc---------------------tggagtg------------caatgacgtgatcttggctcattgcagcctccacttcctgggttcaatcgattctcctgcctcagcctcctgagtagctgggattacaggcacccgccaccacacctggctaattttttgtatttttagtagagacgggg-tttcaccatgttggccaggctggtctcgaacgcct-gacctcaggtgatccacatgcctcagcctcacaaagtgctgggattacaggtg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41105852 241 + 50109623 ccaggc---------------------tggagtg------------caatgacgtgatcttggctcattgcagcctccacttcctgggttcaatcgattctcctgcctcagcctcctgagtagctgggattacaggcacccgccaccacacctggctaattttttgtatttttagtagagacgggg-tttcaccatgttggccaggctggtctcgaacgcct-gacctcaggtgatccacatgcctcagcctcacaaagtgctgggattacaggtg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3120654 241 + 4464012 ccagac---------------------tggagtg------------caatggtgtgatctcggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacccaccaccacgcccagctaattttttgtatttttagtagagacgggg-tttcaccatgttggccaggctggtctcgaacgcct-gacctcaggtgatccacccatctcggcctcccaaagtgctgggattacaggcg i gorGor5.CYUI01015375v1 I 42321 C 0 s nomLeu3.chr7b 106605624 241 - 115148730 ccgggc---------------------tggagtg------------caatgacgcgatcttggctcgttgcagcctccacttcctgggttcaatcgattctcctgcctcagcctcccgagtagctgggattagaggcacccgccaccacacctggctaattttttgtatttttagtagaaacgggg-tttcaccatgttggccaggctggtctcgaactcct-gacctcaggtgatccacatgcctcagcctcacaaagtgctgggattacaggtg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84229682 242 + 92844088 ccaggc---------------------tggagtg------------caatggcgtgatctcacctcactgcaacctccaattcccaggttcaggcaattctcctgccttagcctcccaagtagctgggattacagatgcccgccaccacgaccagctaattttttgtacttttagtagagacggggttttcaccatgttggccgggctggtcttgaacgcct-gacctcaggggatccacacgcctccgcctcgcaaagtgctgggattacaggca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87574881 241 - 96509753 ccaggc---------------------tggagtg------------caatggcgtgatctcacctcactgcaacctccaattcccaggttcaagcaattctcctgccttagcctcccaagtagctgggattacagatgcccgccaccacg-ccagctaattttttgtacttttagtagagacggggttttcaccatgttggccgggctggtcttgaacgcct-gacctcaggggatccacacgcctccgcctcgcaaagtgctgggattacaggca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7066591 243 - 13098629 ccaggc---------------------tggagta------------caatggcgtgatctcacctcactgcaacctccaattcccaggttcaagcaattctcctgccttagcctcccaagtagctgggattacagatgcccgccaccacgaccagctaattttttgtacttttagtagagacggggttttcaccatgttggccgggctggtcttgaacgcctagacctcaggggatccacacgcctccgcctcgcaaagtgctgagattacaggca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4033875 242 - 4483953 ccaggc---------------------tggagtg------------caatggcgtgatctcacctcactgcaacctccaattcccaggttcaagcaattctcctgccttagcctcccaagtagctgggattacagatgcccgccaccacgaccagctaattttttgtacttttggtagagacggggttttcaccatgttggctgggctggtcttgaacgcct-gacctcaggggatccacacgcctccgcctcgcaaagtgctgggattacaggca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24663904 242 + 33263144 ccagac---------------------tggagtg------------caatggcgtgatctcacctcactgcaacctccaattcccaggttcaagcaattctcctgccttagcctcccaagtagctgggattacagatgcccgccaccacgaccagctaattttttgtacttttagtagagacggggttttcaccatgttggccgggctggtcttgaacgcct-gacctcaggggatccacacgcctccgcctcgcaaagtgctgggattacaggta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928113 242 - 14338769 ccaggc---------------------tggagtg------------caatggcgtgatctcacctcactgcaacctccaattcccaggttcaagcaattctcctgccttagcctcccaagtagctgggattacagatgcccgccaccacgaccagctaattttttgtacttttggtagagacggggttttcaccatgttggccgggctggtcttgaacgcct-gacctcaggggatccacacgcctccgcctcgcaaagtgctgggattacaggca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882192 241 + 1946073 ccaggc---------------------tggagtg------------caatggcgtgatctcacctcactacaacctccaattcccaggttcaagcaattctcctgccttagcctccgaagtaggtgggattacagatgcccaccaccacgaccagctaattttttgtacttttattagagacgggg-tttcaccatgttggccgggctggtcttgaacgcct-gacctcacgggatccacccacgtcggcctcgcaaagtgctgggattacaggca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1909258 273 - 2117846 ccaggcattaagagtgcagtgatgcagtgcagtgcactgcaTTgtacagtggtgcaatcttggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcgcgcaccaacatgctcacctaa-cttttgtatttttagtagagataggg-tttctccatgttgaccagactggtctcgaactctt-gacctcaggtgatccaccagccttggcctcccaaagtgctgggattataggtg i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1301435 240 - 1807191 ccaggc---------------------tggagtg------------cagtggtgcaatcttggttcactgcaacctccgcctcccaggttcaagtgattctccagcctcagcctcccaagtacctgggattacaggtgtctgccaccacacccagctaa-tttttatatttttaatagagacgggg-tttctccatgttggccagactggtctcgaactctt-gacctcgggtggtccaccagcctcggcctcccaaagtgctgggattataggag i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46069250 104 - 69331447 ---------------------------------------------------------------------------TTTTTCTTCAAACTACTGGTAATTTT---------------TAGGTGTCTGTGTATGTAGGCACTGAC-------------------TGTGGATTAGT-GTGTAGCTGAGG-----------------------------------T-GACCCTGAGAGGTC-----ACCTCAGCCTTCC--------------------- i canFam3.chr10 C 0 C 0 e otoGar3.GL873526 36255631 506 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8824598 1406 - 16357246 M a score=183928.000000 s hg38.chr22_GL383582v2_alt 45777 28 + 162811 tgagccaccctgcccagccCAATTATAG s panTro5.chr22 28801443 28 + 37823149 tgagccaccctgcccagccCAATTATAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41106093 28 + 50109623 tgagccaccctgcccagccCAATTATAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3120895 28 + 4464012 tgagccaccctgcccagccCAATTATAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106605865 28 - 115148730 tgagccaccctgcccagccCAATTACAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84229924 28 + 92844088 tgagccactgtggccggTTCAATTATAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575122 28 - 96509753 tgagccactgtggccggTTCAATTACAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7066834 28 - 13098629 tgagccactgtggccggTTCAATTATAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034117 28 - 4483953 tgagccactgtggctggTTCAATTATAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664146 28 + 33263144 tgagccactgtggccggttcaattatag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928355 28 - 14338769 taagccactgtggctggTTCAATTATAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882433 28 + 1946073 tgagccactgtggccggTTCAATAATAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1909531 26 - 2117846 tgaactatcgtgcttggccCAGTT--AG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8826015 28 - 16357246 TGAACTACCATGCTTGGCCCAATTAAAG i saiBol1.JH378157 M 1406 C 0 s cebCap1.NW_016107750v1 1301675 28 - 1807191 tgaactaccatgcttggccCAATTACAG i cebCap1.NW_016107750v1 C 0 C 0 e canFam3.chr10 46069354 0 - 69331447 C e otoGar3.GL873526 36255631 506 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I a score=200222.000000 s hg38.chr22_GL383582v2_alt 45805 26 + 162811 ATTTTTTAGGT-TTAGGTGTTGAC---AGT s panTro5.chr22 28801471 26 + 37823149 ATTTTTTAGGT-TTAGGTGTTGAC---AGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41106121 26 + 50109623 ATTTTTTAGGT-TTAGGTGTTGAC---AGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3120923 25 + 4464012 A-TTTTTAAGT-TAAGGTATTGAC---AGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106605893 26 - 115148730 ATTTTTTAGGT-TTAGGTGTTGAC---AGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84229952 26 + 92844088 ATTTTTTAGGT-TGAGGTGTTGAC---AGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575150 26 - 96509753 ATTTTTTAGGT-TGAGGTGTTGAC---AGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7066862 26 - 13098629 ATTTTTTAGGT-TGAGGTGTTGAC---AGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034145 26 - 4483953 ATTTTTTAGGT-TGAGGTGTTGAC---AGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664174 26 + 33263144 attttttAGGT-TTAGGTGTTGAC---AGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928383 26 - 14338769 ATTTTTTAGGT-TGAGGTGTTGAC---AGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882461 26 + 1946073 ATTTTTTAGGC-TTAGGTGTTGAC---AGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1909557 26 - 2117846 ATTTTTTAAGT-TTAGGTTTTGAC---AGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8826043 29 - 16357246 ATTTTTTAAGT-TTAGGTTTTGGCAGTAGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1301703 29 - 1807191 ATTTTTTAAGT-TTAGGTTTTGACAGTAGA i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36256137 27 - 42659167 ATTCTTAAGGTGTTTGCCATCAGC---AGG i otoGar3.GL873526 I 506 I 3 e canFam3.chr10 46069354 0 - 69331447 C e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I a score=455.000000 s hg38.chr22_GL383582v2_alt 45831 3 + 162811 AGC s panTro5.chr22 28801497 3 + 37823149 AGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41106147 3 + 50109623 AGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3120948 1 + 4464012 G-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106605919 3 - 115148730 AGC i nomLeu3.chr7b C 0 C 0 s dasNov3.JH570235 34666 3 + 1056298 AGC i dasNov3.JH570235 N 0 C 0 e canFam3.chr10 46069354 0 - 69331447 C e otoGar3.GL873526 36256164 3 - 42659167 I e proCoq1.NW_012136747v1 5000769 34939 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1301732 0 - 1807191 C e saiBol1.JH378157 8826072 0 - 16357246 C e calJac3.chrUn_GL286373 1909583 0 - 2117846 C e colAng1.NW_012115588v1 882487 0 + 1946073 C e manLeu1.NW_012102031v1 13928409 0 - 14338769 C e chlSab2.chr19 24664200 0 + 33263144 C e cerAty1.NW_011999588v1 4034171 0 - 4483953 C e macNem1.NW_012012688v1 7066888 0 - 13098629 C e macFas5.chr10 87575176 0 - 96509753 C e rheMac8.chr10 84229978 0 + 92844088 C a score=2183754.000000 s hg38.chr22_GL383582v2_alt 45834 200 + 162811 TCTCACCTCAGCC-TGTTCTCTCTCCTTGTCATGCAGCCCACAGGGGAGATGGTCAGGCCAGTGTGGGGGCTAATGAATAAATGCTACACTGTGCCCACTCAGGTGGGTAA-GGGCT-GGCACTCCTCTTCCCCTGGAGTGGGGCGGCTGTGCT-GGCACCCTTGGCAGACACAGTAAGGGGGACTGCACCTGGAAAGGATGGG s panTro5.chr22 28801500 200 + 37823149 TCTCACCTCAGCC-TGTTCTCTCTCCTTGTCATGCAGCCCACAGGGGAGACGGTCAAGCCAGTATGGGGGCTAATGAATAAATGCTACACTGTGCCCACTCAGGTGGGTAA-GGGCT-GGCACTCCTCTTCCCCTGGAGTGGGGCGGCTGTGCT-GGCACCCTTGGCAGACACACTAAGGGGGACTGCACCTGGAAAGGATGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41106150 200 + 50109623 TCTCACCTCAGCC-TGTTCTCTCTCCTTGTCATGCAGCCCACAGGGGAGACGGTCAAGCCAGTATGGGGGCTAATGAATAAATGCTACACTGTGCCCACTCAGGTGGGTAA-GGGCT-GGCACTCCTCTTCCCCTGGAGTGGGGCGGCTGTGCT-GGCACCCTTGGCAGACACACTAAGGGGGACTGCACCTGGAAAGGATGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3120949 200 + 4464012 -CTCACCTCAGCCTTTTTCTCTCTCCTTGTCATGCAGCCCACAGGGGAGACGGTCAAGCCAGTATGGGGGCTAATGAATAAATGCTACACTGTGCCCACTCAGGTGGGTAA-GGGCT-GCCACTCCTCTTCCCCTGGAGTGGGGCGGCTGTGCT-GGCACCCTTGGCAGACACACTAAGGGGAACTGCACCTGGAGAGGATGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106605922 199 - 115148730 TCTCACCTCAGCC-TTTTCTCTCTCCTTGTCATGCAGCCCACAAGGGAGATGGTCAGGCCAGTGTGGGGGCTAATGAATAAATGCTACACTGTGCCCACTCAGGTGGGTAA-GGGCT-GGTACT-CTCTTCCCCTGGAGTGGGGCGGCTGTGCT-GGCACCCTTGGCAGACACAGTATGGGGGACTGCATCTGGAGAGGATGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84229978 200 + 92844088 TCTCACCTCAGCC-TTTTCTCTCTCCTTGTCATGCAGCCCATAGGGGAGACTGTCAGGCCAGTGTGAGGACTAATGAATAAATGCTACACTGTGCCCACTCAGGTGGGTAA-GGGCT-GGCACTCTTCTACCCCTGGAGTGCGGTGGCTATGTT-GGCCCCCTTGGCTGACACAGTAAGGGGGACTGCACCTGGAGAGGATGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575176 200 - 96509753 TCTCACCTCAGCC-TTTTCTCTCTCCTTGTCATGCAGCCCATAGGGGACACTGTCAGGCCAGTGTGAGGACTAATGAATAAATGCTACACTGTGCCCACTCAGGTGGGTAA-GGGCT-GGCACTCTTCTACCCCTGGAGTGCGGTGGCTATGTT-GGCCCCCTTGGCTGACACAGTAAGGGGGACTGCACCTGGAGAGGATGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7066888 200 - 13098629 TCTCACCTCAGCC-TTTTCTCTCTCCTTGTCATGCAGCCCATAGGGGAGACTGTCAGGCCAGTGTGAGGACTAATGAATAAATGCTACACTGTGCCCACTCAGGTGGGTAA-GGGCT-GGCACTCTTCTACCCCTGGAGTGCGGTGGCTATGTT-GGCCCCCTTGGCTGACACAGTAAGGGGGACTGCACCTGGAGAGGATGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034171 200 - 4483953 TCTCACCTCAGCC-TTTTCTCTCTCCTTGTCATGCAGCCCATAGGGGAGACTGTCAGGCCAGTGTGGGGACTAATGAATAAATGCTACACTGTGCCCACTCAGGTGGGTAA-GGGCT-GGCACTCCTCTACCCCTGGAGTGCGGTGGCTATGCT-GGCCCCCTTGGCAGACACAGTAAGGGGGACTGCACCTGGAGAGGATGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664200 200 + 33263144 TCTCACCTCAGCC-TTTTCTCTCTCCTTGTCATGCAGCCCATAGGGGAGACTGTCAGGCCAGCGTGGGGACTAATGAATAAATGCTACACTGTGCCCACTCAGGTGGGTAA-GGGCT-GGCACTCCTCTACCCCTGGAGTGCGGTGGCTATGCT-GCCCCCCTTGGCAGACACAGTAAGGGGGACTGCACCTGGAGAAGATGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928409 200 - 14338769 TCTCACCTCAGCC-TTTTCTCTCTCCTTGTCATGCAGCCCATAGGGGAGACTGTCAGGCCAGTGTGGGGACTAATGAATAAATGCTACACTGTGCCCACTCAGGTGGGTAA-GGGCT-GGCACTCCTCTACCCCTGGAGTGCGGTGGCTATGCT-GGCCCCCTTGGCAGACACAGTAAGGGGGACTGCACCTGGAGAGGATGGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882487 199 + 1946073 TCTCACCTCAGCC-TTTTCTCTCTCCTTGTCATGCAGCCCACAGGGGAGACTGTCAGGCCAGTGTGGGCACTAATGAATAAATGCTACACTGTACACACTCAGGTGGGTAA-GGGCT-GGCACTCCTCTACCCCTGGAGTGCAGTGGCTATGCT-GGCACCCTTGGCAGACACAGTAAGGGGGACTGCA-CTGGAGGGGATGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1909583 199 - 2117846 TCTCACCTCAGCC-T-TTCTCAGCT--TCTCACGCAGCCCATAGGAGAGACTGTAAGGTCAGTGTGGGGGCTAATGAATAAATGCTACCTTGTGCCCACTCAGGTGGGTAA-GGGCTAGGCACTTCTCTTCCCCTGGAGTGGGGTGGCTGTGCTGGGTACCCTTGGCAGACACGGTAAGGGGGACTGCACCTGGAGAGGGTGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8826072 201 - 16357246 TCTCACCTCAGCC-T-TTCTCTCTCTGTGTCACGCAGTCCACAGGGGAGACTGTAAGGTCAGTGTGGGGGCTAATGAATAAATGCTACATGGTGCCCACTCAAGTGGGTAA-GGGCTAGGCACTTCTCTTCCCCTGGAGTGGGGTGGCTGTGCTGGGTACCCTTGGCAGACACGGTAAGGAGGACTGCACCTGGAGAGGGTGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1301732 201 - 1807191 TCTCACCTCAGCC-T-TTCTCTCTCTGTGTCACGCAGCCCACAGGGGAGACTGTAAGGTCAGTGTGGGGGCTAATGAATAAATGCTACATGGTGCCCACTGAGGTGGGTAA-GGGCTAGGCACTTCTCTTCCCCTGGAGTGGGGTGGCTGTGCTGGGTACCCTTGGCAGACACGGTAAGGGGGACTGCACCTGGAGAGGGTGGG i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5035708 201 - 6317780 TCTCGCCTCAGCC-TTCCCTCTCTCCTTGTCATGAAGCCCACAGGGGAGACCTTACTGCCAGTGTGGGGTCTGCTGAATAAATGCTGCCCCATGACCACTCAGGTGGGTAAGGGGCTGGGGAAGTCTCTTGCCCTGGAGTGGGCTTGCTGCCTG-GGCACTCTTGGCAGACACAGTGAGG-GGACTGCACCTGGAGAGGATGGG i proCoq1.NW_012136747v1 I 34939 I 56 s otoGar3.GL873526 36256167 200 - 42659167 TCTCACCTCACCC-TTCCTCCTCT--TTGTCCTGCTGACCATAGGGCAGATATTATACCCAGTGTGGGGGCTGATGAATAAATGTTTCCCTATGACCACTCAGATGGGTGAGGGGCTGAGAAATTCTCTTCCCCTGTAGAGGGGTGGCTGCCCA-GGGCACCCTGGCAGACACAGTGAGGAAGACTATACCTGAAGAGGACAGA i otoGar3.GL873526 I 3 I 4 s canFam3.chr10 46069354 162 - 69331447 ------CTCCGTC-CTTTCTCTCTC---GTCATGCAGCTCGTAAGGGAGTCC-TGAGGCCCGTGTGGGGGC-GATGGAT-AGTGCTATCCCGTGACCACTCA-GTGGGTTA-GGCCT-GGGG-------GCCCCTGATGTGAGGTG--TAGGCT-GGGCACCTGGGT-GGTACAGAGAGAAGTGCAGCA--------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 34669 196 + 1056298 TCCCTCCCCGTCC-C-TGCTCTCTCCTTGTCACGCAGCCCATAGGGGAGACCTCCAGGCCAGTGTGGGGGCTAATGGACAAGTGCTACCCCGTGACCACTCAGGTGGGAGA-GCCTG-GACACCCCTAGCTCCCGGCAGGCGGGTGACTGG----GGTACCCCTGGAGGGGCAGGGAGTGTGGACTGCACCAGGAGAGCGGGGA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I a score=485562.000000 s hg38.chr22_GL383582v2_alt 46034 65 + 162811 CCAGTCGGGGCAGGACTACTCATCAC--------TCATAGTGTGGGTGTCAGGGTTGTGT-CACCCCTCCCACC s panTro5.chr22 28801700 65 + 37823149 CCAGTCGGGGCAGGACTACTCATCAC--------TCATAGTGTGGGTGTCAGGGTTGTGT-CACCCCTCCCACC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41106350 65 + 50109623 CCAGTCGGGGCAGGACTACTCATCAC--------TCATAGTGTGGGTGTCAGGGTTGTGT-CACCCCTCCCACC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3121149 53 + 4464012 CCAGTCGGGGAAGGACTGCTGGTCAC--------TCATAGC-----TG-------TGTGT-CACCCCTCCCACC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606121 53 - 115148730 CCAGTCGGGGAAGGACTGCTCGTCAC--------TCATAGC-----TG-------TGTGT-CACCCCTCCCACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230178 53 + 92844088 CCAGTCAGGGAAGGACTGCTCGCCAC--------TCATAGC-----TG-------TGTGT-CACCCCTCCCACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575376 53 - 96509753 CCAGTCAGGGAAGGACTGCTCGCCAC--------TCATAGC-----TG-------TGTGT-CACCCCTCCCACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067088 53 - 13098629 CCAGTCAGGGAAGGACTGCTCGCCAC--------TCATAGC-----TG-------TGTGT-CACCCCTCCCACC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034371 53 - 4483953 CCAGTCAGGGAAGGACTGCTCGCCAC--------TCATAGC-----TG-------TGTGT-CACCCCTCCCACC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664400 53 + 33263144 CCAGTCAGGGAAGGACTGCTCGCCAC--------TCATAGC-----TG-------TGTGT-CACCCCTCCCACC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928609 53 - 14338769 CCAGTCAGGGAAGGACTGCTCGCCAC--------TCATAGC-----TG-------TGTGT-CACCCCTCCCACC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882686 53 + 1946073 CCAGTCAGGGAAGGACTGCTCGCCAC--------TCATAGC-----TG-------TGTGT-CACCCTTCCCACC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1909782 53 - 2117846 CTAGTTGCGGAAGGACTGCTCAGCAC--------TCATAGC-----TG-------TGTGT-CACCCCTCCCACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8826273 53 - 16357246 CCAGTTGGGGAAGGACTGCTCGGCAC--------TCGTAGC-----TG-------TGTGT-CACCCCTCCCACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1301933 53 - 1807191 CCAGTTGGGGAAGGACTGCTCAGCAC--------TCGTAAC-----TG-------TGTGT-CACCCCTCGCACT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36256371 62 - 42659167 TACTTCAGGGAAGGACTCCCAGTCACCCAGTCAGTCATAGC-----TG-------GCTGTCCAACCCTCCTATT i otoGar3.GL873526 I 4 C 0 s canFam3.chr10 46069516 44 - 69331447 --------GGGAGGACCCCCAGCTGC--------TCACAGC-----TG-------TGAAT-CA-CTCTCCTGTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 34865 49 + 1056298 CTGGTCAGGGAAGGAC-ATTGGTCAC--------TCACAGC--------------GGTGT-CACCTCTCCCAC- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5035909 56 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I a score=651995.000000 s hg38.chr22_GL383582v2_alt 46099 55 + 162811 TCCCTCTGCAGAGACGCAAAGTCAAGAGTAGGAAGAAGCCAACCTCTGAGGTAAG s panTro5.chr22 28801765 55 + 37823149 TCCCTCTGAAGAGACGCAAAGTCAAGAGTAGGAAGAAGCCAACCTCTGAGGTAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41106415 55 + 50109623 TCCCTCTGCAGAGACGCAAAGTCAAGAGTAGGAAGAAGCCAACCTCTGAGGTAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3121202 55 + 4464012 TCCCTCTGCGGAGACGCAAAGTCAAGAGTAGGAAGAAGCCAACCTCTGAGGTAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606174 55 - 115148730 TCCCTCTGCGGAGACGCAAAGTCAAGAGTAGGAAGAAGCCAACCTCGGAGGTAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230231 55 + 92844088 TCCCTCTGTGGAGACGCAAAGTCAAGAGTAGGAAGAAGCCAGCCTCTGAGGTAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575429 55 - 96509753 TCCCTCTGTGGAGACGCAAAGTCAAGAGTAGGAAGAAGCCAGCCTCTGAGGTAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067141 55 - 13098629 TCCCTCTGTGGAGACGCAAAGTCAAGAGTAGGAAGAAGCCAGCCTCTGAGGTAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034424 55 - 4483953 TCCCTCTGTGGAGACGCAAAGTCAAGAGTAGGAAGAAGACAGCCTCTGAGGTAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664453 55 + 33263144 TCCCTCTGTGGAGACGCAAAGTCAAGAGTAGGAAGAAGCCAGCCTCTGAGGTAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928662 55 - 14338769 TCCCTTTGTGGAGACGCAAAGTCAAGAGTAGGAAGAAGCCAGCCTCTGAAGTAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882739 55 + 1946073 TCCCTCTGTGGAGACGCAAAGTCAAGAGTAGGAAGAAGCCAGCCTCTGAGGTGAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1909835 49 - 2117846 TCCCTCTGCAAAAACA------CAGGAGGGAGAAGAAGCCAGCCTCTGAGGTAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8826326 46 - 16357246 TCTCTCTGCAGACACA------CAGGAGGG---GGAAGCCAGCCTCTGAGGTAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1301986 49 - 1807191 TCTCTCTGCAGAGACA------CAGGAGGGGGAAGAAGCCAGCCTCTGAGGTAAG i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5035965 55 - 6317780 TCCCTCTGCAGAGACACAAAGGCAAGAATGGGAAAAAGCCAGCCTCAGAGGTAAG i proCoq1.NW_012136747v1 I 56 I 81 s otoGar3.GL873526 36256433 55 - 42659167 TCCCTCTGCAGAGGCACAAAGTCAAGAGTGAGAAAAAGCCAACCTCAGAGGCAAG i otoGar3.GL873526 C 0 I 4 s canFam3.chr10 46069560 55 - 69331447 TGCTTCTGCAGAGACGCAGAGTCAAGAGCAGGAAGAAGCCAGTCTCTGAGGTGAG i canFam3.chr10 C 0 I 4 s dasNov3.JH570235 34914 54 + 1056298 TTCCTCTGTAGCAAAGCAAAATCAAGAGTGAGAAGCAGCAGGCCCCTGAGGTGA- i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I a score=1385357.000000 s hg38.chr22_GL383582v2_alt 46154 140 + 162811 GCTTCCCCTGGAAGGCCCAGGGCTGGGGCT----CTCTCCTTTCAGAGCTCAGTTAGACCCAG----------ACACA----------CGGCAGGGA-GTCCCAAGGGTAGTGGC-AGGCCCCCTCCAGGAAACTCACAAGGTTACCACAGCT-CAACTGAAAAGGA- s panTro5.chr22 28801820 140 + 37823149 GCTTCCCCTGGAAGGCCCAGGGCTGGGGCT----CTCTCCTTTCAGAGCTCAGTTAGACCCAG----------ACACA----------CGGCAGGGA-GTCCCAAGGGTAGTGGC-AGGCCCCCTCCAGGAAACTCACAAGGTTACCACAGCT-CAACTGAAAAGGA- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41106470 140 + 50109623 GCTTCCCCTGGAAGGCCCAGGGCTGGGGCT----CTCTCCTTTCAGAGCTCAGTTAGACCCAG----------ACACA----------CGGCAGGGA-GTCCCAAGGGTAGTGGC-AGGCCCCCTCCAGGAAACTCACAAGGTTACCACAGCT-CAACTGAAAAGGA- i panPan2.chr22 C 0 I 9145 s gorGor5.CYUI01015375v1 3121257 140 + 4464012 GCTTCCCCTGGAAGGCCCAGGGCTGGGGCT----CTCTCCTTTCAGAGCTCAGTTAGACCCAG----------ACACA----------CGGCAGGGA-GTCCCAAGGGTAGTGGC-AGGCCCCCTCCAGGAAACTCACAAGGTTACCACAGCT-CAACTGAAAAGGA- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606229 139 - 115148730 GCTTCCCCTGGAAGGCCCAGGGCTGGGGCT----CTCTCCTTTCAGAGCTCAGTTAGACCCAG----------ACACA----------CGGCAGGGA-GTCCCAGGGCTAGTGGC-AGG-CCCCTCCAGGAAACTCACAAGGTTACCACAGCT-CAACTGAAAAGGA- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230286 140 + 92844088 GCTTCCCCTGGAAGGCTCAGGGCTGGGGCT----CTCTCCTATCAGAGCTCAGTTAGACCCAG----------ACACA----------TGGCAGGGA-GTCCCGGGGGTAGTGGC-GGGCCCCCTCCAGGAAACTCACAAGGTTACCACAGCT-CAACTGAAAAGGA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575484 140 - 96509753 GCTTCCCCTGGAAGGCTCAGGGCTGGGGCT----CTCTCCTATCAGAGCTCAGTTAGACCCAG----------ACACA----------TGGCAGGGA-GTCCCGGGGGTAGTGGC-GGGCCCCCTCCAGGAAACTCACAAGGTTACCACAGCT-CAACTGAAAAGGA- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067196 140 - 13098629 GCTTCCCCTGGAAGGCTCAGGGCTGGGGCT----CTCTCCTATCAGAGCTCAGTTAGACCCAG----------ACACA----------TGGCAGGGA-GTCCCGGGGGTAGTGGC-GGGCCCCCTCCAGGAAACTCACAAGGTTACCACAGCT-CAACTGAAAAGGA- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034479 140 - 4483953 GCTTCCCCTGGAAGGCTCAGGGCTGGGGCT----GTCTCCTATCAGAGCTCAGTTAGACCCAG----------ACACA----------TGGCAGGGA-GTCCCGGGGGTAGTGGC-GGGCCCCCTCCAGGAAACTCACAAGGTTACCACAGCT-CAACTGAAAAGGA- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664508 140 + 33263144 GCTTCCCCTGGAAGGCTCAGGGCTGGGGCT----CTCTCTTATCAGAGCTCAGTTAGACCCAG----------ACACA----------TGGCAGGGA-GTCCCGGGGGTAGTGGC-GGGCCCCCTCCAGGAAACTCACAAGGTTACCACAGCT-CAACTGAAAAGGA- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928717 142 - 14338769 GCTTCCCCTGGAAGGCTCAGGGCTGGGGCT----CTCTCCTATCAGAGCTCAGTTAGACCCAG--------TTAGACA----------TGGCAGGGA-GTCCCGGGGGTAGTGGC-GGGCCCCCTCCAGGAAACTCACAAGGTTACCACAGCT-CAACTGAAAAGGA- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882794 140 + 1946073 GCTTCCCCTGGAAGGCTCAGGGCTGGGGCT----CTCTCCTATCAGAGCTCAGTTAGACCCAG----------ACACA----------TGGCAGGGA-GTCCCAGGGATAGTGGCAAGGCCCCCTCCAGGAAACTCACAAGGTTACCACAGCT-CAACTGAAAAGG-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1909884 133 - 2117846 GCTTCCCCTAGAAGGCCCTGGGCTGGGGCT----CTCTCCTGTCGGAGGTCAGTTACACACAG--------------------------GGCGGGGA-GTCCT-GGGGTAGTGGT-GGGCCCCCTCCAGGAAACTCACAAGGTTACCACAGCC-GAACTGTAAAGGA- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8826372 133 - 16357246 GCTTCCCCTGGAAGGCCCTGGGCTGGGGCT----CTCTTCTGTCGGAGCTCAGGTACATACAG--------------------------GGCGGGGA-GTCCC-AGGGTAGTGGC-GGGCCCCCTCCAGGAAACTCACAAGGTTACCACAGCT-CAACTGAAAAGGA- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1302035 133 - 1807191 GCTTCCCCTGGAAGGCCCTGGGCTGGGGCT----CTCTCCTGTCAGAGCTCAGTTACACACAG--------------------------GGCGAGGA-GTCCT-GGGGTAGTGGC-GGGCCCCCTCCAGGAAATTCACAAGGTTACCACAGCT-CAGCTGAAAAGGT- i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36256492 134 - 42659167 GCCTCCCCTGGAAG-----GGTCTGGGGTT----GACTGCTGTCAGAGCTCCAGGAGACCCAG----------GGACA----------TGGCAGGAA-TTCCCAGGGATAGTGGC-AGA-CCCCTCCAGGAAACTCACAAAGCCACCACAGCT-TCACTGAGAAGGA- i otoGar3.GL873526 I 4 I 1 s canFam3.chr10 46069619 125 - 69331447 GCTTGCCCCGG-----------CCGAGGCT----CCCT--TGTCAGGGCTCCATGAGATGTGG----------AGACACCCCAGCTCGTGGCGGGGGCGTCCCAGGGCTGGTGGC-AGGGCCCC-CCAGGAAACTGGCAA------------C-CTGCTGAGAAGGG- i canFam3.chr10 I 4 I 1 s dasNov3.JH570235 34968 140 + 1056298 ---------GGAAGGGGCAGGGCTGGGGCCGGGGCTCTCCTGGCAGCTCT---GCAGACCCAGGAGCTCCCCAGCTCA----------TGGCAGGGA-G-CCCGGGGACGGCGGC-CGG--CCCTGCAGG-AGCTGCCAAGGCTAGCCCAGCTGCAGCTGAGAAGGGA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5036020 81 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I a score=199814.000000 s hg38.chr22_GL383582v2_alt 46294 26 + 162811 AGAACTTCCCAG---G------A----------CTGTGACACCCC-- s panTro5.chr22 28801960 26 + 37823149 AGAACTTCCCAG---G------A----------CTGTGACACCCC-- i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3121397 26 + 4464012 AGAACTTCCCAG---G------A----------CTGTGACACCCC-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606368 26 - 115148730 AGAACTTCCCAG---G------A----------CTGTGACACCCC-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230426 26 + 92844088 AGAACTTCACAG---G------A----------CTGCGACACCCC-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575624 26 - 96509753 AGAACTTCACAG---G------A----------CTGCGACACCCC-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067336 26 - 13098629 AGAACTTCACAG---G------A----------CTGCGACACTCC-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034619 26 - 4483953 AGAACTTCACAG---G------A----------CTGCGACACCCC-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664648 26 + 33263144 AGAACTTCACAG---G------A----------CTGCGACACCCC-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928859 26 - 14338769 AGAACTTCACAG---G------A----------CTGCGACACCCC-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882934 23 + 1946073 ---ACTTCACAG---G------A----------CTGCGACACCCC-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1910017 26 - 2117846 AGAACTTCCCAG---A------A----------CTGTGACACCCC-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8826505 26 - 16357246 AGAACTTCCCAG---A------A----------CTGTGGCACCCT-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1302168 26 - 1807191 AGAACTTCCCAG---A------A----------CTGTGGCACCCT-- i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36256627 29 - 42659167 AGGACTTCCAGGAAAG------A----------CAAAGGAACCCA-- i otoGar3.GL873526 I 1 C 0 s canFam3.chr10 46069745 32 - 69331447 AGGACTCCCTTG---GGAAGACA----------CAACTACACACC-- i canFam3.chr10 I 1 I 3 s dasNov3.JH570235 35108 38 + 1056298 AGGACTTCCCAG---A------AGAAGTGGGAGCTGTGCAGTCGCCT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5036020 81 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=174715.000000 s hg38.chr22_GL383582v2_alt 46320 18 + 162811 AGTGTGAGAAC----AGGAGGA-- s panTro5.chr22 28801986 18 + 37823149 AGTGTGAGAAC----AGGAGGA-- i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3121423 18 + 4464012 AGTGTGAGAAC----AGGAGGA-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606394 18 - 115148730 AGTGTGAGAAC----AGGAGGA-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230452 18 + 92844088 AGTGTGAGAAC----GGGAGGA-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575650 18 - 96509753 AGTGTGAGAAC----AGGAGGA-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067362 18 - 13098629 AGTGTGAGAAC----GGGAGGA-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034645 18 - 4483953 AGTGTGAGAAC----GGGAGGA-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664674 18 + 33263144 AGTGTGAGAAC----GGGAGGA-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928885 18 - 14338769 AGTGTGAGAAC----GGGAGGA-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882957 18 + 1946073 AGTGTGAGAAC----AGGAGGA-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1910043 18 - 2117846 AGTGTGAGAAC----ATGAGGA-- i calJac3.chrUn_GL286373 C 0 I 3 s saiBol1.JH378157 8826531 18 - 16357246 AGTGTGAGAAC----ATGAGGA-- i saiBol1.JH378157 C 0 I 3 s cebCap1.NW_016107750v1 1302194 18 - 1807191 AGTGTGAGAAC----ATGAGGA-- i cebCap1.NW_016107750v1 C 0 I 340 s proCoq1.NW_012136747v1 5036101 18 - 6317780 AGTGTGAGAAC----AGGAGGA-- i proCoq1.NW_012136747v1 I 81 I 4 s otoGar3.GL873526 36256656 22 - 42659167 AAGGTGAGAACAGGAAGGAGGA-- i otoGar3.GL873526 C 0 I 4 s canFam3.chr10 46069780 17 - 69331447 GGCCAGAGAAC----AAGGCA--- i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 35146 20 + 1056298 AGAGTGGAGAT----GGGGAGGGA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=119419.000000 s hg38.chr22_GL383582v2_alt 46338 13 + 162811 TGAGGTGCTCTGA s panTro5.chr22 28802004 13 + 37823149 TGAGGTGCTCTGA i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3121441 13 + 4464012 TGAGGTGCTCTGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606412 13 - 115148730 TGAGGTGCTCTGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230470 13 + 92844088 TGAGGTGCTCTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575668 13 - 96509753 TGAGGTGCTCTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067380 13 - 13098629 TGAGGTGCTCTGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034663 13 - 4483953 TGAGGTGCTCTGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664692 13 + 33263144 TGAGGTGCTCTGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928903 13 - 14338769 TGAGGTGCTCTGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882975 13 + 1946073 GGAGGTGCTCTGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1910064 13 - 2117846 TGAGATGTTCTGA i calJac3.chrUn_GL286373 I 3 C 0 s saiBol1.JH378157 8826552 13 - 16357246 TGAGATGTTCTGA i saiBol1.JH378157 I 3 I 319 s proCoq1.NW_012136747v1 5036123 13 - 6317780 TGAGGTGCTCTGA i proCoq1.NW_012136747v1 I 4 C 0 s otoGar3.GL873526 36256682 13 - 42659167 TGGGGTGTTCTGA i otoGar3.GL873526 I 4 C 0 s canFam3.chr10 46069797 9 - 69331447 GGAGGGG----GA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 35166 13 + 1056298 GGCGGCTTTCGGA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1302212 340 - 1807191 I e panPan2.chr22 41106610 9145 + 50109623 I a score=23716.000000 s hg38.chr22_GL383582v2_alt 46351 3 + 162811 AGG- s panTro5.chr22 28802017 3 + 37823149 AGG- i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3121454 3 + 4464012 AGG- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606425 3 - 115148730 AGG- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230483 3 + 92844088 AGG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575681 3 - 96509753 AGG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067393 3 - 13098629 AGG- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034676 3 - 4483953 AGG- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664705 3 + 33263144 AGG- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928916 3 - 14338769 AGG- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882988 3 + 1946073 AGG- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1910077 3 - 2117846 AGG- i calJac3.chrUn_GL286373 C 0 I 313 s saiBol1.JH378157 8826884 3 - 16357246 AGG- i saiBol1.JH378157 I 319 C 0 s proCoq1.NW_012136747v1 5036136 3 - 6317780 GGG- i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36256695 2 - 42659167 -AG- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46069806 3 - 69331447 GGG- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 35179 3 + 1056298 -GGC i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1302212 340 - 1807191 I e panPan2.chr22 41106610 9145 + 50109623 I a score=133898.000000 s hg38.chr22_GL383582v2_alt 46354 17 + 162811 CCTTTCTGCC--CAGTCTG s panTro5.chr22 28802020 17 + 37823149 CCTTTCTGCC--CAGTCTG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3121457 17 + 4464012 CCTTTCTGCC--CAGTCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606428 19 - 115148730 CCTTTCTGCCCACAGTCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230486 19 + 92844088 CCTTTCTGCCCACAGTCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575684 19 - 96509753 CCTTTCTGCCCACAGTCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067396 19 - 13098629 CCTTTCTGCCCACAGTCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034679 19 - 4483953 CCTTTCTGCCCACAGTCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664708 19 + 33263144 CCTTTCTGCCCACAGTCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928919 19 - 14338769 CCTTTCTGCCCACAGTCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 882991 19 + 1946073 CCTTTCTGCCCACAGTCTG i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8826887 19 - 16357246 CCTATCTGCCCATAGTCTA i saiBol1.JH378157 C 0 C 0 s proCoq1.NW_012136747v1 5036139 19 - 6317780 CCTTTCTGCTCATAGTCTG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36256697 14 - 42659167 CCTTTCTGCTCATA----- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46069809 19 - 69331447 CCCTTCTGCCCATATCCCG i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 35182 17 + 1056298 CCTTCCTGCCTCCTCTC-- i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1302212 340 - 1807191 I e calJac3.chrUn_GL286373 1910080 313 - 2117846 I e panPan2.chr22 41106610 9145 + 50109623 I a score=176396.000000 s hg38.chr22_GL383582v2_alt 46371 21 + 162811 CCCTCTTATTCCTCCTGCAGG s panTro5.chr22 28802037 21 + 37823149 CCCTCTTATTCCTCCTGCAGG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3121474 21 + 4464012 CCCTCTTATTCCTCCTGCAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606447 21 - 115148730 CCCTCTTATTCGTCCTGCAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230505 21 + 92844088 CCCTCTTATTCCTCCTGCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575703 21 - 96509753 CCCTCTTATTCCTCCTGCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067415 21 - 13098629 CCCTCTTATTCCTCCTGCAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034698 21 - 4483953 CCCTCTTATTCCTCCTGCAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664727 21 + 33263144 CCCTCTTATTCCTCCTGCAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928938 12 - 14338769 C---------CCTCCTGCAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 883010 21 + 1946073 CCCTCTTATTCCTCCTGCAGG i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8826906 21 - 16357246 CCCTCTTATTCCTCTTGCAGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1302552 21 - 1807191 CCCTCTTATTTCTCTTGCAGC i cebCap1.NW_016107750v1 I 340 C 0 s proCoq1.NW_012136747v1 5036158 21 - 6317780 CCCTCTTGTTCCTCCTGTAGG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36256711 14 - 42659167 -------GTTCCTCCTGTAGG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46069829 21 - 69331447 CCTCCTGACCCCCCTTGCAGG i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 35199 19 + 1056298 TGCTTTCCTCCCTCC--CAGG i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I e calJac3.chrUn_GL286373 1910080 313 - 2117846 I e panPan2.chr22 41106610 9145 + 50109623 I a score=1672292.000000 s hg38.chr22_GL383582v2_alt 46392 167 + 162811 TCACGACCCCCAGGAGACCTGGAGGACTGAATGCTGCTGCCCCC-AAGGAGGAGGCTGCCGTCTTATCCCA----GGAGGGAGAGCAGGTG-----AAGTCCCCAGGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGC------AGGAGGTGGCAGGTACCCCAGACTGGGAGGTAAGGACA s panTro5.chr22 28802058 167 + 37823149 TCATGACCCCCAGGAGACCTGGAGGACTGAATGCTGCTGTCCCC-AAGGAGGAGGCTGCCGTCTTATCCCA----GGAGGGAGAGCAGGTG-----AAGTCCCCAGGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGC------AGGAGGTGGCAGGTACCCCAGACTGGGAGGTAAGGACA i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3121495 167 + 4464012 TCACGACCCCCAGGAGACCTGGAGGACTGAATGCTGCTGCCCCC-AAGGAGGAGGCTGCCGTCTTATCCCA----GGAGGGAGAGCAGGTG-----AAGTCCCCAGGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGC------AGGAGGTGGCAGGTACCCCAGACTGGGAGGTAAGGACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606468 167 - 115148730 TCACGACCCCCAGGAGACCTGGAGGACTGAATGCTGCTGCCCCC-AAGGAGGAGGCTGCCGTCTTATCCGA----GGAGGGACAGCAGGTG-----AAGTCCCCAGGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGC------AGGAGGTGGCAGGTACCCCAGACTGGGAGGTAAGGACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230526 167 + 92844088 TCATGATCCCCAGGGGACCTGGAGGACTGAATGATGCTGCCCCC----GAGGAGGCTGCTGTCTTGTCTTA----GGAGGGAGAGCAGGTG-----AAGTCCCCATGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGC---AAGAAGAGGTGGCAGGGACCCCAGACTGGGAGGTAAGGACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575724 167 - 96509753 TCATGATCCCCAGGGGACCTGGAGGACTGAATGATGCTGCCCCC----GAGGAGGCTGCTGTCTTGTCTTA----GGAGGGAGAGCAGGTG-----AAGTCCCCATGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGC---AAGAAGAGGTGGCAGGGACCCCAGACTGGGAGGTAAGGACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067436 167 - 13098629 TCATGATCCCCAGGGGACCTGGAGGACTGAATGATGCTGCCCCC----GAGGAGGCTGCTGTCTTGTCTTA----GGAGGGAGAGCAGGTG-----AAGTCCCCATGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGC---AAGAAGAGGTGGCAGGGACCCCAGACTGGGAGGTAAGGACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034719 167 - 4483953 TCATGATCCCCAGGGGACCTGGAGGACTGAATGATGCTGCCCCC----GAGGAGGCTGCTGTCTTGTCTTA----GGAGGGAGAGCAGGTG-----AAGTCCCTATGGGAGGAAGCACCTAGCCCCATTTCTGCTGAGC---AAGAAGAGGTGGCAGGGACCCCAGACTGGGAGGTAAGGACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664748 167 + 33263144 TCATGATCCCCAGGGGACCTGGAGGACTGAATGATGCTGCCCCC----GAGGAGGCTGCTGTCTTGTCTTA----GGAGGGAGAGCAGGTG-----AAGTCCCCATGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGC---AAGAAGAGGTGGCAGGGACCCCAGACTGGGAGGTAAGGACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13928950 167 - 14338769 TCATGATCCCCAGGGGACCTGGAGGACTGAATGATGCTGCCCCC----GAGGAGGCTGCTGTCTTGTCTTA----GGAGGGAGAGCAGGTG-----AAGTCCCTATGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGC---AAGAAGAGGTGGCAGGGACCCCAGACTGGGAGGTAAGGACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 883031 167 + 1946073 TCATGATCCCCAGGGGACCTGGAGGACTGAATGATGCTGCCCCT----GAGGAGGCTGCTATCTTGTCTTA----GGAGGGAGAGCAGGTG-----AAGTCCCCATGGGAGGAAGCACCTAGCCCCATTCCTGCTGAGC---AAGAAGAGGTGGCAGGGACCCCAGACTGGGAGGTAAGGACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1910393 168 - 2117846 TCATGACCCCCAGGGGACCTGGAGGACTGAATGATGTTGCTCTCCAAGGAGGAGGCTGCCATCTTGTCTCA----GGAGGGAGAGCAGGTG-----AAGTCCCCATGGGAGGAAGCATCTAGCCCCATTCCTGCTGACC------AGGAGGTGGCAGGGACCCCAGGCTGGGAGGTAAGGACA i calJac3.chrUn_GL286373 I 313 C 0 s saiBol1.JH378157 8826927 168 - 16357246 TCTTGACCCCTAGGGGACCTGGAGGACTGAATGATGTTGCTCCTCAAGGAGGAAGCTGCCATCTTGTCTCA----GGAGGGAGAGCAGGTG-----AAGTCCCTATGGAAGGAAGCATCTAGCCCCATTCCTGCTGAGC------AAGAGGTGGCAGGGACCCCAGGCTGGGAGGTAAGGACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1302573 168 - 1807191 TCATGACCCCCAGGGGGCCTGGAGGACTGAATGATGTTGCTCCCCAAGGAGGAGGCTGCCATCTTGTCTCA----GGAGAGAGAGCAGGTG-----AAGTCCCCATGGGAGGAAGCATCTAGCCCCATTCCTGCTGAGC------AAGAGGTGGCAGGGACCCCAGGCTGGGAGGTAAGGACA i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5036179 167 - 6317780 CCATGACCCCCAGGGCACCTGGAGGACTGAAGGATGCTGCCCCT-AAGGAGGAAGCTGACATCTTGTCTCA----GGAGGAAGAGCAGGAA-----AGGTCCCCAGGGGAGGAAGCAGCTAGCCCTATTCCTACTGAGG------AAGACGTGGCAGGGACCCCAGGCTAGGAGGTAAGGACA i proCoq1.NW_012136747v1 C 0 I 186 s otoGar3.GL873526 36256725 163 - 42659167 CCATAACCCCCAGGGCACCTGGAGGACTAAAGGAAGTTGCCCCT-AAGGAGGAAGCTGACATCTTGTCTCA----GGAGGAAGCAT----G-----AGATCCCCAGTGGAGGAAGCAGCTAGCCCTATTCCTGCTGAAG------AAGAGGTGGCAGGGACCCCAGGCTGGCAGGTAAGGTTA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46069850 163 - 69331447 CTGTGCCCCCCAAGGCGAAGGGAGGACTGAATGGTGCTGCCCCT-GAGGGGGAGACTGACATCTTGTCTCAGCGTGAGGGGGAAGCAGCCGGCCCTGGGCCCGCTGGGAAGGAGGTG---------------GCTGAGG---AGGAAGAGGTGGCAGGGGTCCCAGGCTGGGAGGTAAGGAG- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 35218 107 + 1056298 CCATGAGCCCCCGGGCCCTGGGA---------------GCCTCC--------------------------A----AGA------------------TGGTTCCAAGGAGAAGAA--AGCTGACC---------CTGAGCCTCAGGAGGAGGGGGCAGGGA-CCTGGGCTGG-AGGGAAGGATA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=1867138.000000 s hg38.chr22_GL383582v2_alt 46559 255 + 162811 GCCCGGGGCTTCGACT-GAACGTCTCCAGCGTGGGT-CCAACTGAGCAGCCATGGAGCACTGCAGAGTgggaggcagcagggcagggaggcagtgct-ggaggctggcTCAACCCCAAGACCAGCAGGCCAAGCTGCCATCCCAGGGGAGCGAGGACGTCTGTGCAGAGCTGAGAGGCAGCAGCC-AT-GTGTGAAC--A--GACT-GGGCCTCATCCTGGCCCCACC-GACTTTGTGTGGA-CAGAG----CCTGTTTCCCTGTCTGTGC- s panTro5.chr22 28802225 254 + 37823149 GCCCAGGGCTTCAACT-GAACGTCTCCGGCATGGGT-CCGACTGAGCAGCCATGGAGCACTGCAGAGTgggaggcagcagggcagggaggcagtgct-ggaggctggcTCAACCCCAAGACCAGCAGGCCAAGCTGCCATCCCAGGGGAGCGAGGACGTCTGTGCAGAGCTGAGAGGCAGCAGCC-AT-ATGTGAAC--A--GACT-GGGCCTCATCCTGGCCCCACC-GACTTTGTGTGGA-CAGAG----CCTGTTT-CCTGTCTGTGC- i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3121662 256 + 4464012 GCCCGGGGCTTCAACTGGAACGTCTCCAGCATGGGT-CCGACTGAGCAGCCATGGAGCACTGCAGAGTGGGAGGCAGCAGGGCAGGGAAGCAGTGCT-GGAGGCTGGCTCAACCCCAAGACCAGCAGGCCAAGCTGCCATCCCAGGGGAGCGAGGACGTCTGTGCAGAGCTGAGAGGCAGTAGCC-AT-GTGTGAAC--A--GACT-GGGCCTCATCCTGGCCTCACC-AACTTTGTGTGGA-CAGAG----CCTGTTTCCCTGTCTGTGC- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606635 256 - 115148730 GCCCCGTGCTTCAACTGGAACGTGTCCAGCGTGGGT-CTGACTGAGCAGCCATGGAGCACTGCAGAGTGGGAGGCAGCAGGGCAGGGAGGCAGTGCT-GGAGGCTGGCTCAACCCTAAGACCAGCAGGCCAAGCTGCCATCCCAGGGGAGCGAGGACGTCTGTGCAGAGCTGAGAGGCAGCAGCC-AT-GTGTGAAC--A--GACT-GGGCCTCATCCTGGCCCCACC-GACTTCGTGTGGA-CAGAG----CCTGTTTCCCTGTCTGATC- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230693 243 + 92844088 GCCCGGGGCTTCAACTGGAATGTCTCCAGCATGGGT-CCGACTGAGCAGCCACGGAGCACTGCAGAGTGGGAGGCAGC--------GGGGCAGTACT-GGAGACTGGCTCAACCTCAAGACCAGCAGGCCAAGCTGCTGGTCCGGGA----TGGGACATCTGTGCAGAGCTGAGAGGCAGGAGGC-AT-GTGTGAAC--A--GACTGGGGCCTCATCCTGGCTCCACC-GACTT-TTGCAGA-CAGAG----CCTGTTT-CCTGTCTGTGT- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87575891 248 - 96509753 GCCCGGGGCTTCAACTGGAATGTCTCCAGCATGGGT-CCGACTGAGCAGCCACGGAGCACTGCAGAGTGGGAGGCAGC--------GGGGCAGTACT-GGAGGCTGGCTCAACCTCAAGACCAGCAGGCCAAGCTGCTGTCCCAGGGGAGTGAGGACATCTGTGCAGAGCTGAGAGGCAGCAGCC-AT-GTGTGAAC--A--GACT-GGGCCTCATCCTGGCCCCACC-GACTTCTTGCAGA-CAGAG----CCTGTTTCCCTGTCTGTGT- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067603 248 - 13098629 GCCCGGGGCTTCAACTGGAATGTCTCCAGCATGGGT-CCGACTGAGCAGCCACGGAGCACTGCAGAGTGGGAGGCAGG--------GAGGCAGTACT-GGAGGCTGGCTCAACCTCAAGACCAGCAGGCCAAGCTGCTGTCCCAGGGGAGTGAGGACATCTGTGCAGAGCTGAGAGGCAGCAGCC-AT-GTGTGAAC--A--GACT-GGGCCTCATCCTGGCCCCACC-GACTTCTTGCAGA-CAGAG----CCTGTTTCCCTGTCTGTGT- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4034886 255 - 4483953 GCCCGGGGCTTCAACTGGAATGTCTCCAGCATGGGT-CCGACTGAGCAGCCACGGAGCACTGCAGAGTGGGAGGCAGCAGGGCAGGGAGGCAGTACT-GGAGGCTGGCTCAACCTGAAGACCAGCAGGCCAAGCTG-TGTCCCAGGGGAGTGAAGACATCTGTGCAGAGCTGAGAGGCAGCAGCC-AT-GTGTGAAC--A--GACT-GGGCCTCATCCTGGCCCCACC-GACTTCTTGCAGA-CAGAG----CCTGTTTCCCTGTCTGTGT- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24664915 256 + 33263144 GCCCGGGGCTTCAACTGGAATGTCTCCAGCATGGGT-CCGACTGAGCAGCCACAGAGCACTGCAGAGTGGGAGGCAGCGGGGCAGGGAGGCAGTACT-GGAGGCTGGCTCAACCTCAAGACCAGCAGGCCAAGCTGCTGTCCCAGGGGAGTGAGGACATCTGTGCAGAGCTGAGAGGCAGCAGCC-AT-GTGTGAAC--A--GACT-GGGCCTCATCCTGGCCCCACC-GACTTCTTGCAGA-CAGAG----CCTGTTTCCCTGTCTGTGT- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13929117 256 - 14338769 GCCCGGGGCTTCAACTGGAATGTCTCCAGCATGAGT-CCGACTGAGCAGCCACGGAGCACTGCAGAGTGGGAGGCAGCAGGGCAGGGAGGCAGTACT-GGAGGCTGGCTCAACCTCAAGACCAGCAGGCCAAGCTGCTGTCCCAGGGGAGTGAGGACATCTGTGCAGAGCTGAGAGGCAGCAGCC-AT-GTGTGAAC--A--GACT-GGGCCTCATCCTGGCCCCACC-GACTTCTTGCAGA-CAGAG----CCTGTTTCCCTGTCTGTGT- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 883198 256 + 1946073 GCCCCGGGCTTCAACTGGAATGTCTCCAGCATGGGT-CCGACTGAGCAGCCACGGGGCACTGCAGAGTGGGAGGCAGCGGGGCAGGGAGGCAGTACT-GGAGGCTGGCTCAACCTCAAGACCAGCAGGCCACGCTGCTGTCTCAGGGGAGTGAGGACATCTGTGCAGAGCTGAGAGGCAGCAGCC-AT-GTGTGAAC--A--GACT-GGGCCTCATCCTGGCCCCACC-GACTTCTTGCGGA-CAGAG----CCCGTTTCCCTGTCTGTGT- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1910561 222 - 2117846 GCCT-GGGCTTCAACTGGGACATCTCCAGCATGAGT-CCAACGGAGCAG------------GCAGA--------------------GAGGGACTGCT-GGAGGCTGGCTCAACCTCAAGACAAGCAGGCCAAGCTGCCATTTTAGGGGAATGAGGACATCTGTGCGGATCTGAGAGGAGGCAGCC-AT-GTGTGAAC--A--GACT-GGGTCTCATCCTGGCCTCCCCTGACTTCATGTGGA-CAGAG----CCTGTTTCCCTGTC--TGC- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8827095 226 - 16357246 GCCTGGGGCTTCAACTGGAACATCTCCAGCATGAGTCCCAACTGAGCAG------------GCAGA--------------------GAGGCACTGCT-GGAGGCTGGCTCAATCCCAAGATGAGCAGGCCAAGCTGCCATTTTAGGGGAGCGAGGACATCTGTGCGGAGCTGAGAGGCAGCAGCC-AT-GTGTGAAC--A--GACT-GGGTCTCATCCTGGCCTCCCCTGACTTCATGTGGA-CAGAG----CCTGTTTCCCTGTTGGTGC- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1302741 225 - 1807191 GCCTGAGGCTTCAGCTGGAACATCTCCAGCATGAGT-CCAACTGAGCAG------------GCAGA--------------------GAGGCACTGCT-GGAGGCTGGCTCAACCCCAAGACGAGCAGGCCAAGCTGCCATTTTAGGTGAGCGAGGACATCTGTGCAGAGCTGAGACACAACAGCC-AT-GTGTGAAC--A--GACT-GGGTCTCATCCTGGCCTCCCCTGACTTCATGTGGA-CAGAG----CCTGTTTCCCTGTCTGTGC- i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36256888 231 - 42659167 CTCTGGAGTCTCCACT-------TTCCAG--------TCAA-GGAGAAGCTATGGATCACTGCATGGTGGG---------------GAGGCAG---T-GGGGGCTGCTGCAAGCCCAAGCCTAGCAGGCTCAGCTGCCACTCCAGCAGCACAAGGAGCTCTGCCTGCAGCTGAGAGGCAGCAGATGAG-GTATGAGC--AGGGAGT-GGGTCT-GGCCTGACCTCGCCCAGCTTCTTGTGGAGCAGAGAGCCTCTGTTTCCCCAACTGTTC- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46070013 256 - 69331447 -GCGGGTGGGCCAGCTGGAATGTTCCCGGCAC-CGT-CCTACTGAGAAGCCCAGGAGCACTGCAGGATGGAGGTCA--TGGGAAGGAGGGCAGAGCTGGGGGGATGGGGCA--CCCAAGACCCCTGGGCCAAACTGCCATCCCAGTGGGGCAAGGGGCCCTA--CAGAGCCCAGAGGCAGCAGCC-ATGGTGTGAGCCAA--GAGT-GGGTCTGAACCCTGCCTCCCCCGACTTCCTGTGAA-GCGAG-GCCTCAGTTTCCCTGTCTGTGT- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 35325 197 + 1056298 GTCTGGGGGCTCACCCAGGAC-TCCCCTGCCCGGCC-CGCTCTGCACTGCTGTGGG------------------------------GAG-------T-GGAGGC-----CACCCCCACGCCCAGCAGGCCAGGCCGCCACCCCAGGGG---------CTCTGTGTGGCG-TGATGGGCAGC--CC-GG-----GGGC--C--GCGG-AGCCCCCAGGCTCCCCTCCCC-GACTCCTCACCCAGTGGGG----CCTGTCTGCCC--CTGTGCC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5036346 186 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=188683.000000 s hg38.chr22_GL383582v2_alt 46814 23 + 162811 AA-CACAG-AACCTGCCTGATCTCA s panTro5.chr22 28802479 22 + 37823149 AA-CA-AG-AACCTGCCTGATCTCA i panTro5.chr22 C 0 I 9778 s gorGor5.CYUI01015375v1 3121918 23 + 4464012 AA-CACAG-AACCTGCCTGATCTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606891 22 - 115148730 TC-AA-AG-AACCTGCCTGATCTCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230936 25 + 92844088 AACCACAGAAACCTGCCTGATCTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87576139 23 - 96509753 AA-CACAG-AACCTGCCTGATCTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067851 23 - 13098629 AA-CACAG-AACCTGCCTGATCTCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4035141 23 - 4483953 AA-CACAG-AACCTGCCTGATCTCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24665171 23 + 33263144 AA-CACAA-AACCTGCCTGATCTCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13929373 23 - 14338769 AA-CACAG-AACCTGCCTGATCTCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 883454 23 + 1946073 AA-CACAG-AACCTGCCTGATCTCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1910783 23 - 2117846 CG-CACAG-AACCTGGCTGATCTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8827321 19 - 16357246 AG-CATGG-AAC----CTGATCTCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1302966 23 - 1807191 AG-CACAG-AACCTGTCTGATCTCA i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5036532 23 - 6317780 AA-CACAG-AACCTGCCTCATTCCA i proCoq1.NW_012136747v1 I 186 C 0 s otoGar3.GL873526 36257119 23 - 42659167 AA-CATGG-AACCTGCCTCACCCCA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46070269 23 - 69331447 AA-CATGG-GGCCTATCTTCTCCCA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 35522 23 + 1056298 CA-CCTGG-GGGCTGCCCCCCACCA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=8071.000000 s hg38.chr22_GL383582v2_alt 46837 1 + 162811 C s gorGor5.CYUI01015375v1 3121941 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606913 1 - 115148730 C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230961 1 + 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87576162 1 - 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067874 1 - 13098629 C i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4035164 1 - 4483953 C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24665194 1 + 33263144 C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13929396 1 - 14338769 C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 883477 1 + 1946073 C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1910806 1 - 2117846 T i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8827340 1 - 16357246 T i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1302989 1 - 1807191 T i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5036555 1 - 6317780 C i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36257142 1 - 42659167 C i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46070292 1 - 69331447 C i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 35545 1 + 1056298 C i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I e panTro5.chr22 28802501 9778 + 37823149 I a score=768562.000000 s hg38.chr22_GL383582v2_alt 46838 88 + 162811 TGCTGG-ATCCCTCTTC-TTCCTGCCAG-GAAAAT-AAAAAGGTTCAAAAG-GAAGT-TGCTGCGTAT-CCATCTGGTAAGACCACTGACCCAGC s panTro5.chr22 28812279 90 + 37823149 TGCTGGCATCCCTCTTCTTTCCTGCCAGTGAAAATAAAAAAGGTTCAAAAGCGAAGTGTGCTGCGTATACCATT--GTAA---CACGGACCCAGC i panTro5.chr22 I 9778 C 0 s gorGor5.CYUI01015375v1 3121942 88 + 4464012 TGCTGG-ATCCCTCTTC-TTCCTGCCAG-GAAAAT-AAAAAGGTTCAAAAG-GAAGT-TGCTGCGTAT-CCATCTGGTAAGACCACTGACCCAGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106606914 88 - 115148730 TGCTGG-ATCCCTCTTC-TTCCTGCCAG-GAAAAT-AAAAAGGTTCAAAAG-GAAGT-TGCTGCGTAT-CCATCTGGTAAGACCACTGGCCCAAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84230962 83 + 92844088 TGCTGG-GTTCTCTTCC-TCCTTGCCAG-GAA----ATAAAGGTTC--AAG-GAACT-TGCCTGGTAT-CCATCTGGTAAGACCACCGGCCCAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87576163 88 - 96509753 TGCTGG-GTTCCTCTTC-CTCCTGCCAG-GAAAAT-AAAAAGGTTCAAAAG-GAAAT-TGCTGGGTAT-CCATCTGGTAAGACCACCGGCCCAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067875 88 - 13098629 TGCTGG-GTTCCTCTTC-CTCCTGCCAG-GAAAAT-AAAAAGGTTCAAAAG-GAAAT-TGCTGGGTAT-CCATCTGGTAAGACCACCGGCCCAGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4035165 88 - 4483953 TGCTGG-GTTCCTCTTC-CTCCTGCCAG-GAAAAT-AAAAAGGTTCAAAAG-GAAAT-TGCTGGGTAT-CCATCTGGTAAGACCACTGGCCCAGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24665195 88 + 33263144 TGCTGG-GTTCCTCTTC-CTCCTGCCAG-GAAAAT-AAAAAGGTTCAAAAG-GAAAT-TGCTGGGTAT-CCATCTGGTAAGACCACCGGCCCAGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13929397 88 - 14338769 TGCTGG-GTTCTTCTTC-CTCCTGCCAG-GAAAAT-AAAAAGGTTCAAAAG-GAAAT-TGCTGGGTAT-CCATCTGGTAAGACCACAGGCCCAGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 883478 88 + 1946073 TGCTGG-GTTCCTCTTC-TTCCTGCCAG-GAAAAT-AAAAAGGTTCAAAAG-GAAAT-TGCTGGGTAT-CCATCTGGTAAGACCACCGGCCCAGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1910807 85 - 2117846 TGCTGG-GTCCC---TC-TTCATGCCAG-GAAAAT-AAACAGGTTCCAAAG-GAATT-TGCTGTGTCT-CCATCTGGTAAGACTGTGGATCCAAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8827341 88 - 16357246 TGCTGG-GTCCCTCTTC-TTCCTGTCAG-GAAAAT-AAACAGGTTCCAAAG-GAAGT-TGCTGCGTCT-CCAGCTGGTAAGACCGTGGGCCCAAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1302990 88 - 1807191 TGCTAG-GTCCCTCTTC-TTCCTGCCAG-GAAAAT-AAACAGGTTCCAAAG-GAAGT-TGCTGCGTCT-CCAGCTGGTAAGACCGTGGGCCCAAT i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5036556 88 - 6317780 AGCTGA-ACCCCTCTTC-TTCCTTCCAA-GAAAAT-AAAAAGGTCCAAATG-GAAAT-TGCTGCATAT-TCATCTGGTAAGACTCCTGGCCCAGC i proCoq1.NW_012136747v1 C 0 I 122 s otoGar3.GL873526 36257143 88 - 42659167 TGCTAC-ACCCCTCTTC-TTACTTCCAA-AAAAAT-TAAAAGGTCCAAAAG-GACGT-TGCTGCATAT-TAAACTGGTAGGACTGTTGGCCAAGC i otoGar3.GL873526 C 0 I 1 s canFam3.chr10 46070293 87 - 69331447 CACTGT-GCCCCGTCT--TTCTTCCCAG-GAAAAC-ACCCAGGTCCGCAAG-GAGAT-TGCAGTATAC-GCCTCTGGTAAGACCGCCGGCCCCAC i canFam3.chr10 C 0 I 4 s dasNov3.JH570235 35546 84 + 1056298 -ACTGT-GCCCCTCTT--TGCTCCCCAG-GAAAAG-AAAAGGGACCAAACG-GAAGT-TGCTGTTGAT-TCTTCTGGTAACATTACTGACCCC-- i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=782593.000000 s hg38.chr22_GL383582v2_alt 46926 124 + 162811 GTGCTGCAGGGGGCTGCTTCCACCCTGCTTCTCAGTGACTGCCAGGGTCA---------CAGACACCCCAGCCCTTTC-CCACCTTC-CTGACCTGGGGAGGGGA-----GGGGAGGGAAGCAGC--CCA-GG-AGTCAGGTGC s panTro5.chr22 28812369 115 + 37823149 GTGCTGCA--GGGCTGCTT-CACCCTGCTTCTCAGTGACTGCCAGGGTCA---------CAGACACCCCAGCCCTTTC-CCACCTTCACTGACCT-GGGAGGGGA-----------GGAAGCAGC--CTGCAG-AGT-AGGTCG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122030 124 + 4464012 GTGCTGCAGGGGGCTGCTTCCACCCCGCTTCTCAGTGACTGCCAGGGTCA---------CAGACACCCCAGCCCTTTC-CCACCTTC-CTGACCTGGGGAGGGGA-----GGGGAGGGAAGCAGC--CCA-GG-AGTCAGGTGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607002 119 - 115148730 GTGCTGCAGGGGGCTGCTTCCACCCTGCTTCTCAGTGACTGCCAGGGTCA---------CAGACACCCCAGCCCTTTC-CCACCTTC-CTGACCTGGGGAGGGGA----------GGGAAGCAGC--CCA-GG-AGTCAGGTGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231045 119 + 92844088 GTGCTGCAGGGCGCTGCTTCCATCCTACTTCTCAGCGACTGCTAGGGTCA---------CACACACCCCAGCCCTTTC-CCGCCTTC-CTGAGCTGTGGAGGGGA----------GGGAAACAGC--CCA-GG-AGTCAGGTAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87576251 119 - 96509753 GTGCTGCAGGGCGCTGCTTCCATCCTACTTCTCAGCGACTGCTAGGGTCA---------CACACACCCCAGCCCTTTC-CCGCCTTC-CTGAGCTGTGGAGGGGA----------GGGAAACAGC--CCA-GG-AGTCAGGTAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7067963 119 - 13098629 GTGCTGCAGGGCGCTGCTTCCATCCTACTTCTCAGCGACTGCTAGGGTCA---------CACACACCCCAGCCCTTTC-CCGCCTTC-CTGAGCTGTGGAGGGGA----------GGGAAACAGC--CCA-GG-AGTCAGGTAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4035253 119 - 4483953 GTGCGGCAGGGGGCTGCTTCCACCCTACTTCTCAGCGACTGCTAGGGTCT---------CACACACCCCAGCCCTTTC-CCGCCTTC-CTGAGCTGTGGAGGGGA----------GGGAAGCAGC--CCA-GG-AGTCAGGTAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24665283 119 + 33263144 GTGCTGCAGGGGGCTGCTTCCACCCTACTTCTCAGAGACTGCTAGGGTCA---------CACACACCCCAGCCCTTTC-CCGCCTTC-CTGAGCTGTGGAGGGGA----------GGGAAGCAGC--CCA-GG-AGTCAGGTAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13929485 119 - 14338769 GTGCTGCAGGGGGCTGCTTCCACCCTACTTCTCAGCGACTGCTAGGGTCT---------CACACACCCCAGCCCTTTC-CCACCTTC-CTGAGCTGTGGAGGGGA----------GGGAAGCAGC--CCA-GG-AGTCAGGTAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 883566 117 + 1946073 GTGCTGCAGGGGGCTGCTTCCACCCTACTTCTCAGTGACTGCTAGGGT-----------CAGACACCCCAGCCCTTTC-CCGCCTTC-CTGAGCTGTGGAGGGGA----------GGGAAGCAGC--CCA-GG-AGTCAGGTGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1910892 94 - 2117846 ATGCTAA----------------------TCTCAGTGACTGCTAGGGTCA---------CAGAGCCCCCAGCCCTTTC-CCACCTTC-CTGACCTGGGGAGGGG---------------AGCAGCCTCTA-GG-AGTCAGGTGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8827429 97 - 16357246 GTGTTAA----------------------TCTCAGTGACTGCTAGGATCA---------CAGAGCCCCCAGCCCTTTC-CCACCTTC-CTGACCTGGGGAGGGGA----------GGGAAGCAGC--CTA-GG-AGTCAGGTGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1303078 97 - 1807191 GTACTAA----------------------TCTCAGTGACTGCTAGGGTCA---------CGGAGCCCCCAGCCCTTTC-CCACCTTC-CTGACCTGGGGAGGGGA----------GGGAAGCAGC--CTA-GG-AGTCAGGTGT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36257232 116 - 42659167 TTACGGCCCAGGGAAGACTTCCTCTTAC--CCCAGTGACTGCTGGAGTCA---------CAGAG--TCCAGCCCCATT-AGACATTC-CTGACCTGGGGAGGGGA----------GAGAGGAAGC--CCA-GGTAGCCAGATGC i otoGar3.GL873526 I 1 C 0 s canFam3.chr10 46070384 122 - 69331447 CTGCAGCAGTGCAGCAGGCCCACCTCCCTCCCTAAC-----CTGGGGACATAGCAACAGCACAGACACCGGCTCCTCT-CAGGCCCC-TGGCCCTGGGGTGGGGC-----------GGAGGAAGC--CCG-GC-CGCCAGATGC i canFam3.chr10 I 4 C 0 s dasNov3.JH570235 35630 121 + 1056298 ----------ACCCTGCATTCCTCCCTAATCCAAGTCCCTCCTGGGGTCA---------CAGAGAACCAAGCCCCTCAGGGACCTTT-CTGCCTGGGGGCGGGGGGCGGGGGGCAAGGAAGCAGC--CCA-GCTGGCCTGGAGC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5036644 122 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=446325.000000 s hg38.chr22_GL383582v2_alt 47050 48 + 162811 -------CTTGACCTTCCTGGGA------------GCCTCCTTGGGTGGGCAGGAACTC-TGGGC-CAC s panTro5.chr22 28812484 50 + 37823149 -------CTTGACCTTCCTGAGG------------AGCTCCTTGGGTGGGCAGGAACTCTTGGGCGCAC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122154 48 + 4464012 -------CTTGACCTTCCTGGGA------------GCCTCCTTGGGTGGGCAGGAACTC-TGGGC-CAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607121 48 - 115148730 -------CTTGACCTTCCTGGGA------------GCCTCCTTGGGTGGGCAGGAACTC-CGGGC-CAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231164 48 + 92844088 -------CTGGACCTTCCTAGGA------------GCCTCCTTGGGTGGGCAGGATCTC-CGGGC-CAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87576370 48 - 96509753 -------CTGGACCTTCCTAGGA------------GCCTCCTTGGGTGGGCAGGAACTC-CGGGC-CAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068082 48 - 13098629 -------CTGGACCTTCCTAGGA------------GCCTCCTTGGGTGGGCAGGAACTC-CGGGC-CAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4035372 48 - 4483953 -------CTGGACCTTCCTAGGA------------GCCTCCTTGGGTGGGCAGGAACTC-CGGGC-CAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24665402 48 + 33263144 -------CTGGACCTTCCTAGGA------------GCCTCCTTGGGTGGGCAGGAACTC-CGGGC-CAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13929604 48 - 14338769 -------CTGGACCTTCCTAGGA------------GCCTCCTTGGGTGGGCAGGAACTC-CGGGC-CAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 883683 48 + 1946073 -------CTGGACCTTCCTAGGA------------GCCTCCTTGGGTGGGCAGGAACTC-CGGGC-CAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1910986 48 - 2117846 -------CTTGACCTTCCCGGGA------------GGCTCCCTGGGTTGGCAGGAACTC-CAGGC-CAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8827526 48 - 16357246 -------CTTGACCTTCTCGGGA------------GCCTCCCTGGGTTGGCAGGAACTC-CAGGC-TAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1303175 48 - 1807191 -------CTTGACCTTCCCAGGA------------GCCTCCCTGGGTTGGCAGGAACTC-CAGGC-CAC i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5036766 48 - 6317780 -------CTTGACCTTCCTGTGA------------GCCTCCCGGGGTAGGCAGGAACCC-TGGGT-CAC i proCoq1.NW_012136747v1 I 122 I 23036 s otoGar3.GL873526 36257348 47 - 42659167 -------CTGGACGCTCCTGTGA------------GCCTCCTGGGGTTGGCAGGAACCG-TGGGT-CA- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46070506 46 - 69331447 --------CCATCCCCCCTGAAT------------ATCTTCCT-GGTTGGCAGGAACTT-GAGGC-CTC i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 35751 65 + 1056298 CCCCACCCTGAACAAGCCTGTGCAGCTCGCCTGCTGCCTCCCCCGGTCAGGAGG--CTT-CGGGG-CAC i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=2940687.000000 s hg38.chr22_GL383582v2_alt 47098 448 + 162811 TCCCCTGAGCTGGCTGCATCCCTA--CCTT--TCAC-CACAGCTGACCTGGC--CCCGGGGC------------------ATC-TCAGAGGGAGGGTTGGTTGCTCCCAGGAGGGGACTCACA-AGGC-TGCCTGTTTCTACTTTG-CAGAGGCCTCTGA---G---GACAGCAAAGAGCA-AAGGCCCTGGGACC--GGGTCT-ACGTGCCC---ATGA--CAGAGCTCTGGCTGGACTGGTTCTGAGCCTCTAACACCCCCAAGACTCAGAACCGTGAA-GAA-AATCTTTCCAATAAATCC-A-AGA---GTTGCTGCTGCTAT------------------A-G-GC--CAGGCTGCCACCTTTCGGGGCCTCCGTCTT-CAGAC-AAACCCAGCCTGGCTTCATCCACACTCCCTG--TCCCCACAGCTGCAGGAACAGCACTTCCTGCCACCGAGCCG-TGTGACCACAGTGGATTGTCTCTGGAGGGG--CCCAAGGGGGCCCTGGCCACCCTTCTGACT-G s panTro5.chr22 28812534 441 + 37823149 TCCCCTGA-CTGGG-ACAT-CCTA--CCTTTATCACACACAGCTGACCT-GC--TCGGCGGC------------------ATCATCAGAGGAAGGGTTTGGTGCT-CCAGGA-GGGACTCACATAGG---------TTTTACTTTG-CAGAGGCCTCTGA---G---GACAGCAAAGAGCA-AGG--CCTGGGACCCGGGATCT--CGTGGCCTCAATGGACCAGAG-TCT-GCTGGACTGGTTCTGAGCCTCTAACACCCCCAAGACTCAGCACCGTGAA-GAA-AATCTTT-CAATAAATCCAA-AGA---GTTGCTGC-GCTAT------------------A-GAGCCGCAGCCTGCCACCTTT-AGGACCTCCGTCTTCCAGACAAAACCCAGCCTG--CTCATCCACACTCCCTGTCTCCCCACAGCTGCAGGAACA-CACTT-CTGCCACGGAGCCGCTGTGACCACAG-GGATTGTCTCTGGAGGGG--CCCAAGGGGGCCCT-GCCACCC-TCTGATTAG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122202 448 + 4464012 TCCCCTGAGCTGGCTGCATCCCTA--CCTT--TCAC-CACAGCTGACCTGGC--CCCGGGGC------------------ATC-TCAGAGGGAGGGTTGATTGCTCCCAGGAGGGGACTCACA-AGGC-TGCCGGTTTCTACTTTG-CAGAGGCCTCTGA---G---GACAGCAAAGAGCA-AAGGCCCTGGGACC--GGGTCT-CCGTGCCC---ATGA--CAGAGCTCTGGCTGGACTGGTTCTCAGCCTCTAACACCCCCAAGACTCAGAACCGTGAA-GAA-AATCTTTCCAATAAATCC-A-AGA---GTTGCTGCTGCTAT------------------A-G-GC--CAGGCTGCCACCTCTCGGGGCCTCCGTCTT-CAGAC-AAACCCAGCCTGGCTTCATCCACACTCCCTG--TCCCCACAGCTGCAGGAACAGCACTTCCTGCCACCGAGCCG-TGTGACCACAGTGGATTGTCTCTGGAGGGG--CCCAAGGGGGCCCTGGCCACCTTTCTGACT-G i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607169 448 - 115148730 TCCCCTGAGCTGGCTGCATCCCTA--CCTT--TCAC-CACAGCTGACCTGGC--CCTGGGGC------------------ATC-TCAGAGGGAGGGTTGGTTGCTCCCAGGAGGGGACTCACA-AGGC-TGCCGGTTTCTACTTTG-CAGAGGACTCTGA---G---GACAGCAAAGAGCA-AAGGCCCTGGGACT--GGGTCT-CTGTGCCC---ATGA--CAGAGCTCTGGCTGGGCTGGTTCTCAGCCTCTAACACCCCCAAGACTCAGAACCGTGAA-GAA-AAACTTCCCAATAAATCC-A-AGA---GTTGCTGCTGCTAT------------------A-G-GC--CAGGCTGCCACCTTTCGGGGCCTCCGTCTT-CAGAC-AAACCCAGCCTGGCTTCATCCACGCTCTCTG--TCCCCACAGCTGCAGGAACAGCACTTCCTGCCACCGAGCCG-TGTGACCACAGTGGATTGTCTCTGGAGGGG--CCCAAGGGGGCCCTGGCCACTTTTCTGACT-G i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231212 444 + 92844088 TCCCCTGAGCTGGCTGCATCCCTA--CCTT--TCAC-CACAGCTGACCTGGC--CCCCGGGC------------------ATC-TCAGAGGGAGGTT----TGCTCCCAGCAGGGGACTCAAA-AGGC-CGCCGGTTTCTACTTTG-CAGAGGCCTCTGA---G---GACAGCAAAGAGCATAAGGCCCTGGGACT--GGTTCC-CCGTGCTC---ATGA--CAGAGCTCTGCCTGGACTGGCTCTCAGCCTCCAACAACCTCAAGACTCAGAACTGTGAA-GAA-AAAGTTTCCAGTAATTCC-A-AGA---GTTGCTGCTGCTAT------------------A-G-GC--CCTGCTGCTGCCTTTTGGGGCCTCCATCTT-CAGAG-AGACCCAGTGTGGCTTCATCCACACTCCCTG--TCCCCACAGCTGCAGGAACAGCACTTCCTGCCACCGAGCCA-CTTCACCACAATGGATTGTCTCTGGAAGGG---ACAAGGGGGCCCTGGCCGGCCTTCCGACT-G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87576418 444 - 96509753 TCCCCTGAGCTGGCTGCATCCCTA--CCTT--TCAC-CACAGCTGACCTGGC--CCCCGGGC------------------ATC-TCAGAGGGAGGTT----TGCTCCCAGCAGGGGACTCAAA-AGGC-CGCCGGTTTCTACTTTG-CAGAGGCCTCTGA---G---GACAGCAAAGAGCATAAGGCCCTGGGACT--GGTTCC-CCGTGCTC---ATGA--CAGAGCTCTGCCTGGACTGGCTCTCAGCCTCCAACACCCTCAAGACTCAGAACTGTGAA-GAA-AAAGTTTCCAATAATTCC-A-AGA---GTTGCTGCTGCTAT------------------A-G-GC--CCTGCTGCTGCCTTTTGGGGCCTCCATCTT-CAGAG-AGACCCAGTGTGGCTTCATCCATACTCCCTG--TCCCCACAGCTGCAGGAACAGCACTTCCTGCCACCGAGCCA-CATCACCACAATGGATTGTCTCTGGAAGGG---ACAAGGGGGCCCTGGCTGGCCTTCCGACT-G i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068130 444 - 13098629 TCCCCTGAGCTGGCTGCATCCCTA--CCTT--TCAC-CACAGCTGACCTGGC--CCCCGGGC------------------ATC-TCAGAGGGAGGTT----TGCTCCCAGCAGGGGACTCAAA-AGGC-CGCCGGTTTCTACTTTG-CAGAGGCCTCTGA---G---GACAGCAAAGAGCATAAGGCCCTGGGACT--GGTTCC-CCGTGCTC---ATGA--CAGAGCTCTGCCTGGACTGGCTCTCAGCCTCCAACACCCTCAAGACTCAGAACTGTGAA-GAA-AAAGTTTCCACTAATTCC-A-AGA---GTTGCTGCTGCTAT------------------A-G-GC--CCTGCTGCTGCCTTTTGGGGCCTCCATCTT-CAGAG-AAACCCAGTGTGGCTTCATCCACACTCCCTG--TCCCCACAGCTGCAGGAACAGCACTTCCTGCCACCGAGCCA-CGTCACCACAATGGATTGTCTCTGGAAGGG---ACAAGGGGGCCCTGGCCGGCCTTCCGACT-G i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4035420 447 - 4483953 TCCCCTGAGCTGGCTGCATCCCTA--CCTT--TCAC-CACAGCTGACCTGGC--CCCTGGGC------------------ATC-ACAGAGGGAGGTT----TGCTCCCAGCAGGGGACTCAAA-AGGC-TGCCAGTTTCTACTTTG-CAGAGGCCTCTGA---G---GACAGCAAAGAGCATAAGGCCCTGGGACT--GGTTCC-CCGTGCTC---ATGA--CAGAGCTCTGCCTGGACTGGCTCTCAGCTTCCAACACCCTCAAGACTCAGAACTGTGAA-GAA-AAAGTTTCCAATAATTCC-A-AGAGTTGTTGCTGCTGCTAT------------------A-G-GC--CCTGCTGCTGCCTTTTGGGGCCTCCGTCTT-CAGAG-AAACCCAGTGTGGCTTCATCCACATTCCCTG--TCCCCACAGCTGCAGGAACAGCACTTCCTGCCACCGAGCCA-CGTCACCACAATGGATTGTCTCTGGAAGGG---ACAAGGGGGCCCTGGCCGGCCTTCCGACT-G i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24665450 462 + 33263144 TCCCCTGAGCTGGCTGCATCCCTA--CCTT--TCAT-CACAGCTGACCTGGC--CCCCGGGC------------------ATC-TCAGAGGGAGGTT----TGCTCCCAGCAGGGGACTCAAA-AGGC-TGCCGGTTTCTACTTTG-CAGAGGCCTCTGA---G---GACAGCAAAGAGCATAAGGCCCTGGGACT--GGTTCC-CCGTGCTC---ATGA--CAGAGCTCTGCCTGGACTGGCTCTCAGCCTCCAACACCCTCAAGACTCCGAACTGTGAA-GAA-AAAGTTTCCAATAATTCC-A-AGA---GTtgctgctgctataggctttgctgctgctaca-g-gc--cctgctgctgcCTTTTGGGGCCTCCGTCTT-CAGAG-AAACCCAGTGTGGCTTCATCCACACTCCCTG--TCCCCACAGCTGCAGGAACAGCACTTCCTGCCACCGAGCCA-TGTCACCACAATGGATTGTCTCTGGAAGGG---ACAAGGGGGCCCTGGCCGGCCTTCCAACT-G i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13929652 444 - 14338769 TCCCCTGAGCTGGCTGCATCCCTA--CCTT--TCAC-CACAGCTGACCTGGC--CCCTGGGC------------------ATC-ACAGAGGGAGGTT----TGCTCCCAGCAGGGGACTCAAA-AGGC-TGCCGGTTTCTACTTTG-CAGAGGCCTCTGA---G---GACAGCAAAGAGCATAAGGCCCTGGGACT--GGTTCC-CCGTGCTC---ATGA--CAGAGCTCTGCCTGGACTGGCTCTCAGCTTCCAACACCCTCAAGACTCAGAACTGTGAA-GAA-AAAGTTTCCAATAATTCC-A-AGA---GTTGCTGCTGCTAT------------------A-G-GC--CCTGCTGCTGCCTTTTGGGGCCTCCGTCTT-CAGAG-AAACCCAGTGTGGCTTCATCCACATTCCCTG--TCCCCACAGCTGCAGGAACAGCACTTCCTGCCACCGAGCCA-TGTCACCACAATGGATTGTCTCTGGAAGGG---ACAAGGGGGCCCTGGCCGGCCTTCCGACT-G i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 883731 442 + 1946073 TCCCCTGAGCTGGCTGCATCCCGA--CCTT--TCAC-CACAGCTGACCTGGC--CCCCGGGC------------------ATC-TCAGAGGGAGGTT----TGCTCCCAGCAGGGGACTCAAA-AGGC-TGCCAGTTTCTACTTTG-CAGAGGCCTCTGA---G---GACAGCAAAGACCA-AAGGCCCTGGGACT--GGTTCC-CCGT-CTC---ATGA--CAGAGCTCTGCCTGGACTGGCTCTCAGCCTCCAACACCCCCAAGACTCAGAACCGTGAA-GAA-AAAGTTTCCAATAATTTC-A-AGA---GTTGCTGCTGCTAT------------------A-G-GC--CCTGCTGCTGCCTTTTGGGGCCTCCGTCTT-CAGAC-AAACCCAGTGTGGCTTCATCCACACTCCCTG--TCCCCACAGCTGCAGGAACAGCACTTCCTGCCACCGAGCCG-CGTCACCACAGTGGATTGTCTCTGGAAGGG---ACAAGGGGGCCCTGGCCGGTCTTCCGACT-G i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911034 415 - 2117846 TCCCCTGAGCTGGCTGCATCCTGT--CCTT--TAAC-CACAGCTAACTGGCCCACCTGGGGC------------------ATC-TCAGAGGGAGGGT----TGCTCCCAGCAGGGGACTTAGA-AGGC-TG-CGGTTTCTACTTTG-TAGAGGCCTCTGAAGAG---GACAGTAATGAGTA-AAGGCCCTGGGACT--GGGTCC--CATGCTT---GTGA--TCGAG-----------CTGCTTC-CAGCCTCTGACAGCCCCAAGACTCAGAACCACAAA-GAA-AAAGTTTCCAGTAAATCC-A-AGA---GTTGCTGCTGCTGC------------------A-G-GC--TTGGCTACCGCCTTTTGGGGCCTCCATCTT---GAC-AAACCGAGTCTGGCCTCATCCACACTCTGTG--T-CCCACAGCTGCAGGAACAGCAC-------------ACCC-TGCTACCACAGTGGACTGTCTCTGGAGTGG--CCCAAGGAGGCTCTGGCCGGCCTTT----G-G i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8827574 433 - 16357246 TCCCCTGAGCCGGCTGCATCCTGT--CCTT--TCAC-CACAGCTGAGTGGCCCTCCTGGGGC------------------ATC-TCAGAGGGAGGGT----TGTTCCCAGCA-GAGACTTAGA-AGGC-TGCCAGTTTCTACTTTGCCAGAGGCCTCTGAAGGG---GACAGTAATGAGTA-AAGGCCCTGGGACT--GGGTCC--CATGCTC---GTGA--CAGAG-----------CTGGTTCTCAGTCTCCCACAGCCCCAAGACTCAGAACCGCAAA-G---AAAGTTTCCAGAAAATCC-A-AGAGCTGCTGCTGCTGCTGC------------------A-G-TC--TGGGCTGCTGCCTTTCGGGGCCTCCATTTT-CAGAC-AAACCCATTCTGGCCTCATCCACATTCCGTG--T-CCCACAGGGGCAGGAACGGCACCTCCTGCCACCAAGCCC-TGCCACCACAGTGGACTGTCTCTGGAGTGG--CCCAAGGGGGCCCTGGCCGGCCTTC----T-G i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1303223 432 - 1807191 TCCCCTGAGCCAGCTGCATCCTGT--CCTT--TCAC-CACAGCTGCCTGGACCTCCTGGGGC-------------------TC-TCAGAGGGAGGGT----TGCTCCCAGCAGGGGACTTAGA-AGGC-TGCTGGTTTCTACTTTG-TAGAGGCCTCTGAAGAG---GACAGTAATGAGTA-AAGGCCCTGGGACT--GGGTCC--CATGCTT---GTGA--CAGAG-----------CTGGTTCTCGGCCTCCGACAGCCCCAAGACTC--AACTGCAAA-GAA-AAAGTTTCCAGAAAATCC-A-AGAgctgctgctgctgctgc------------------a-g-gc--tcagctgcCACCTTTCAGGGCCTCCATCTT-CAGAC-AGACCCAGTCTGGCCTCATCCACATTCTGTG--T-CCCACAGCTGCAGGAACAGCACCTCCTGCCACCAAGCCC-TGCCACCACAGCGGACTGTCCCTGGAGTGG--CCCAAGGGGGCCCTGGCCAGCCTTC----T-G i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36257395 406 - 42659167 -CCCCTTAGCTGCCTGTACACCTAACCCTG--TTAT-CACAGCTGATCTGGC--CCCCAGGCAGCCGAGGTGGAGACTTCATC-CCTGGGAGAAGTT----TCCTCTCAGCAGGGACCCCAGA-GGGCATGCCTGTGTGTGGTTCC-TAGAGGCCCCCGA---GATTGACAGCAAGGAGCA-GAGGCCCAGGAGCT--GGGTCCCCCCCGCTC---CTGA--GGAAGCTGTGGCAGAGCTTGGTCCCAGCCTCAGACAACCCCGAGACTCAGAAA-ATGAG-TGA-GAAGCGCCCAGTGAATCT-G-TGA---GCTGCTGCTTCTGT------------------A-G-GC--CC-GCTGCCTCCTGTCAGGGTCTGTCTCCT-CAGAC--AACCCAGC-TGGGGCCATGCACACTCCCTG--T-CACACAGCTTCAGGGACA------------------CCA--------------------CTCTGG------------------CCTGGCCAGCTTTCTG----- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46070553 354 - 69331447 CCCCTTGGGCTGGAGGAAC----A--------GCAT-CAGAG-------GGA--GCCCTGGC--------------------C-CTGGGGAAAGGTC----CCTCCCCAGCAGGGGACCCATA-GGGCATGCCTGTTTGTGC-TCG-TAGAGGCCTCTGAGATG---GAGAGTAAGGAGGG-AAGGCCTGGGGGCT--GGGTCC-CCCAGCTC---CTGA--GGAAGCTCTGGTTGGACTGGTTCCCAGCCCCTGACATCCCGAAGACTCAGAACCACGAATGAC-CAAGCACCCAATAAATGC-ACAGA---CTTGCTGCTTCTGC------------------A-G-GC--CCTGCTACTTCCTTTCCGGGGCT------T-CATCG-AAACCCAGTGAGGCCCCATCCACACTCCCTG-----CCACACCTG--------------------------CTA--------------------CTCTGGAGAGG----------------------CCCTCCG----- i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 35816 360 + 1056298 -CCGCTGAGCTGGCAGAGTCCCTG--CCTT--GTGT-C-CGTCTGGCCTGGA--CGTGCGGT---------GGCCCCCTGACC-CGGGGAATAGGGT------CCTCTAGCA-AGACCCCACA-GGGCCTGTCTGTCTGTGCTTC--TAGAGGCCTCCGA---G---GTGGGGGACGAGGA-GAGGCCCGGGGGCT--GGGTCC-TCGCGCTC----TGA--GGAAGCTCGGGCTGGGCTGGCTCCCCGCACCCGGCACCCCCAGGACTCAGAGGCCCGAA-GGACCAAGTGCCCAGTA--CCC-G-CCC---CTCGCTGCTGCTGG------------------GCG-GC--CTGGCTGCCTCCTTC----------------CAGCC-CGGCCC----------------CCCTCCCGG-----------------------------CCGCCACCGGGCCC-TGACG-----------------TGGCCGGGACCCCAGGGTGGCCTTTCC--------------- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5036814 23036 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=622365.000000 s hg38.chr22_GL383582v2_alt 47546 70 + 162811 ACTCGG-TGCCAGGGGACAGACCAACGTCCCTCTCGT--GCTGACAGC-CGGGCCGCACCCT-GGCATGAGGGCA s panTro5.chr22 28812975 75 + 37823149 ACTCGGCTGCAAGGGGACAGACCAAGTACCCTCTCGTAAGCTGACAGCACGTGCGCCACCCTAGGCATGAGGGCA i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122650 70 + 4464012 ACTCGG-TGCCAGGAGACAGACCAACGTCCCTCTCGT--GCTGACAGC-CGGGCCGCACCCT-GGCATGAGGGCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607617 70 - 115148730 ACTCGG-TGCCAGGGGACAGACCAATGTCCCTCTCGT--GCTGACATC-CGGGCCACACCCT-AGCATGAGGGCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231656 70 + 92844088 ACTCGG-TGCCAGGGGATGGACCAACGTTCCTCTCGT--GCTGACAGC-CGGGCCGCACCCT-GGCAAGAGGTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87576862 70 - 96509753 ACTCGG-TGCCAGGGGATGGACCAACGTTCCTCTCGT--GCTGACAGC-CGGGCCGCACCCT-GGCAAGAGGGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068574 70 - 13098629 ACTCGG-TGCCAGGGGATGGACCAACGTTCCTCTCGT--GCTGACAGC-CGGGCCGCACCCT-GGCAAGAGGGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4035867 70 - 4483953 ACTCGG-TGCCAGGGGATGGACCAACGTCCCTCTTGT--GCTGACAGC-CGGGCTGCACCCT-GGCAAGAGGGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24665912 70 + 33263144 ACTCGG-TGCCAGGGGATGGACCAACGTCCCTCTCGT--GCTGACAGC-CGGGCCACACCCT-GGCAAGAGGGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930096 70 - 14338769 ACTTGG-TGCCAGGGGATGGACCAACGTCCCTCTTGT--GCTGACAGC-CGGGCTGCACCCT-GGCAAGAGGGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884173 70 + 1946073 ACTTGG-TGCCAGGGGATGGACCAACGTCCCTCTCGT--GCTGACAGC-CGGGCCTCACCCT-GGCAAGGGGGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911449 70 - 2117846 ACTCAG-TGCCAGGGGACAGACCAGTGTCCCTCTTGT--GCTGACAGC-TGGGCTGCACCCT-GGCATGAGGGCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828007 70 - 16357246 ACTCAG-TGCCAGGGGACAGACCAATGTCCCTCTTGT--GCTGACAGC-TGGGCTGCACCCT-GGCACGAGGGCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1303655 70 - 1807191 ACTCAG-TGCCAGGGGACAGACCAATGTCCCTCTTGT--GCCGACAGC-TGGGCCGCACCCT-GGCTTGAGGGCA i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5059850 70 - 6317780 ACTCGG-AGCCAGGGGACAGGCCAAGGTCCCTGTAGC--GCTGAGAGC-TGGGCAGCTCCCT-GGCACGAGGGCA i proCoq1.NW_012136747v1 I 23036 I 27 s otoGar3.GL873526 36257801 70 - 42659167 ACTCAG-AGGCAGGAGACAGACTAAGGTCCCTATAGT--GCTAAGAGC-TGGGCAGGTCCCT-GTCACATGGGCA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46070907 62 - 69331447 ACTCGG-AGCCAAGGGACAGAGCAAGTTC----------CCTGAACGT-GGGGGAGCTCCAT-GTCAGGAGGGCG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 36176 38 + 1056298 ACTCAG-TGCCCGGGGACAGACCA---CCCCTGCAGT--GTAGG------------------------------- i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=133633.000000 s hg38.chr22_GL383582v2_alt 47616 17 + 162811 TTTAC-AGAAATGCT-GGC s panTro5.chr22 28813050 19 + 37823149 TTTACGAGAAATGTTGGGC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122720 17 + 4464012 TTTAC-AGAAATGCT-GGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607687 17 - 115148730 TTTAC-AGAAATGCT-GGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231726 17 + 92844088 TTTAC-AGAAATGCT-GGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87576932 17 - 96509753 TTTAC-AGAAATGCT-GGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068644 17 - 13098629 TTTAC-AGAAATGCT-GGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4035937 17 - 4483953 TTTAC-AGAAATGCT-GGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24665982 17 + 33263144 TTTAC-AGAAATGCT-GGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930166 17 - 14338769 TTTAC-AGAAATGCT-GGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884243 17 + 1946073 TTTAC-AGAAATGCT-GGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911519 17 - 2117846 TTTAC-AGAAGTGCT-GGC i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8828077 17 - 16357246 TTTAC-AGAAATGCT-GGC i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1303725 17 - 1807191 TTTAC-AGAAATGCT-GGC i cebCap1.NW_016107750v1 C 0 I 13 s otoGar3.GL873526 36257871 17 - 42659167 TTAAT-GAAAAGGGT-GGT i otoGar3.GL873526 C 0 I 11 s canFam3.chr10 46070969 16 - 69331447 TTTA--GAAGGTGCT-GGT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 36214 3 + 1056298 ----------------GGC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5059920 27 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=48399.000000 s hg38.chr22_GL383582v2_alt 47633 11 + 162811 GGAA-CTGCTGC s panTro5.chr22 28813069 11 + 37823149 GTAATCTGCTG- i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122737 11 + 4464012 GGAA-CTGCTGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607704 11 - 115148730 AGAA-CTGCTGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231743 12 + 92844088 GGGAACCGCTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87576949 12 - 96509753 GGGAACCGCTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068661 12 - 13098629 GGGAACCGCTGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4035954 12 - 4483953 GGGAACCGCTGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24665999 12 + 33263144 GGGAACCGCTGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930183 12 - 14338769 GGGAACCGCTGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884260 12 + 1946073 GGGAATCGCTGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911537 11 - 2117846 -GGAACCACTGT i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8828095 11 - 16357246 -GGAACCACTGT i saiBol1.JH378157 I 1 C 0 s otoGar3.GL873526 36257899 12 - 42659167 AGGCACAGTGGC i otoGar3.GL873526 I 11 I 80 s canFam3.chr10 46070985 11 - 69331447 -GGGACGTCTGT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 36217 11 + 1056298 -GGGAGCCCTGC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5059920 27 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1303742 13 - 1807191 I e panPan2.chr22 41106610 9145 + 50109623 I a score=86513.000000 s hg38.chr22_GL383582v2_alt 47644 11 + 162811 CAGGGAGGCTG s panTro5.chr22 28813080 11 + 37823149 CAGGGAGGCTG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122748 11 + 4464012 CAGGGAGGCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607715 11 - 115148730 CAGGGAGGCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231755 11 + 92844088 CAGGGATGCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87576961 11 - 96509753 CAGGGATGCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068673 11 - 13098629 CAGGGATGCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4035966 11 - 4483953 CAGGGATGCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666011 11 + 33263144 CAGGGATGCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930195 11 - 14338769 CAGGGATGCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884272 11 + 1946073 CAGGGATGCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911548 11 - 2117846 CAGGAAGGCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828106 1 - 16357246 C---------- i saiBol1.JH378157 C 0 C 0 s proCoq1.NW_012136747v1 5059947 11 - 6317780 CAGGGATGCTG i proCoq1.NW_012136747v1 I 27 C 0 s otoGar3.GL873526 36257991 11 - 42659167 tcaggaggctg i otoGar3.GL873526 I 80 I 144 s canFam3.chr10 46070996 11 - 69331447 CAGGGATGCTG i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 36228 11 + 1056298 CCAGAGGGCCG i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1303742 13 - 1807191 I e panPan2.chr22 41106610 9145 + 50109623 I a score=206081.000000 s hg38.chr22_GL383582v2_alt 47655 24 + 162811 TAGG----------------GTCCT------CTGGCAAAAG---AGGCC s panTro5.chr22 28813091 23 + 37823149 TAGG----------------GT-CT------CTGGCAAAAT---AGGCC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122759 24 + 4464012 TAGG----------------GTCCT------CTGGCAAAAG---AGGCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607726 24 - 115148730 TAGG----------------GTCCT------CTGGCAAAAG---AGGCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231766 24 + 92844088 TAGG----------------GTCCT------CTGGCAAAAG---AGGTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87576972 24 - 96509753 TAGG----------------GTCCT------CTGGCAAAAG---AGGTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068684 24 - 13098629 TAGG----------------GTCCT------CTGGCAAAAG---AGGTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4035977 24 - 4483953 TAGG----------------GTCCT------CTGGCAAAAG---AGGTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666022 24 + 33263144 TAGG----------------GTCCT------CTGGCAAAAG---AAGTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930206 24 - 14338769 TAGG----------------GTCCT------CTGGCAAAAG---AGGTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884283 24 + 1946073 TAGG----------------GTCCT------CTGGCAAAAG---AGGTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911559 24 - 2117846 TAGG----------------GTTCT------CTAGCAAAGG---AGGCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828107 24 - 16357246 TACA----------------GTCCT------CTGACAAAGG---AGGCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1303755 24 - 1807191 TATG----------------GTCCT------TTGGCAAAGG---AGGCC i cebCap1.NW_016107750v1 I 13 C 0 s proCoq1.NW_012136747v1 5059958 24 - 6317780 TGGG----------------GTCCT------CTGGCAAAAG---AAGCC i proCoq1.NW_012136747v1 C 0 I 157 s otoGar3.GL873526 36258146 30 - 42659167 TGGG----------GGTCCTGTCCT------CAGTTCAAAG---ATGAC i otoGar3.GL873526 I 144 I 1 s canFam3.chr10 46071008 40 - 69331447 TGGGTACAGGGTGGAGGGGTGTCCT------TTGGAAAGAG---AGGCC i canFam3.chr10 I 1 I 8 s dasNov3.JH570235 36239 33 + 1056298 TGAG----------------GGCCTGACGGGGCGCCCAAGGCACGGGCC i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=397929.000000 s hg38.chr22_GL383582v2_alt 47679 52 + 162811 -TCAGGTGGCTC---CT--CAGAGTG-T-CTGTGGTTCTCTGTCCCAGGCTGTTCCCTAA s panTro5.chr22 28813114 50 + 37823149 -TCAGGTG---C---TT--CAGAGTGTT-CTGTGTTCTTCTGTCCCAAGCTGTTCCCTAA i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122783 52 + 4464012 -TCAGGTGGCTC---CT--CAGAGTG-T-CTGTGGTTCTCTGTCCCAGGCTGTTCCCTAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607750 52 - 115148730 -TCAGGTGGCTT---CT--CAGAGTG-T-CTGCGGTTCTCTATCCCAGGCTGTTCCTTAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231790 52 + 92844088 -TCAAGTGGCTT---CT--CAGAGTG-T-CTGTGGTTCTCTATCCCAGGCTGTTCCCTAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87576996 52 - 96509753 -TCAAGTGGCTT---CT--CAGAGTG-T-CTGTGGTTCTCTATCCCAGGCTGTTCCCTAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068708 52 - 13098629 -TCAAGTGGCTT---CT--CAGAGTG-T-CTGTGGTTCTCTATCCCAGGCTGTTCCCTAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036001 52 - 4483953 -TCAGGTGGCTT---CT--CAGAGTG-T-CTGTGGTTCTCTATCCCAGGCTGTTCCCTAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666046 52 + 33263144 -TCAGGTGGCTT---CT--CAGAGTG-T-CTGTGGTTCTCTATCCCAGGCTCTTCCCTAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930230 52 - 14338769 -TCAGGTGGCTT---CT--CAGAGTG-T-CTGTGGTTCTCTATCCCAGGCTGTTCCCTAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884307 52 + 1946073 -TCAGGTGGCTT---CT--CAGAGTG-T-CTGTGGTTCTCTATCCCAGGCTGTTCCCTAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911583 50 - 2117846 -TCAGGTGGCCT---CT--CGGAGTG-T-CT--GAGTCTCTGCTCCGGGCTGTTCCCTAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828131 50 - 16357246 -TCGGGTGACTT---CT--CAGAGTG-T-CT--GGTTCTCTGCTCTGGGTTGTTCCCTAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1303779 50 - 1807191 -TCGGGTGGCTT---CT--CAGAGTG-T-CT--GGTTCTCTGCTCCGGGCTGTTCCCTAA i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36258177 52 - 42659167 -TTGGGTGGCTCCTGCT--CTGAGTG-TGCTG----TTTCTGTTCAAGGCTGTTTCCTAA i otoGar3.GL873526 I 1 C 0 s canFam3.chr10 46071056 47 - 69331447 --TGGGGTGCCT---CTAACCGAATG-T-CTCTAGT------CCCCAGGCTGTTCTCTAA i canFam3.chr10 I 8 I 572 s dasNov3.JH570235 36272 51 + 1056298 TCCGTGTGTCTT---CC--C-GGGCG-T-TAGTGGGTTTCAGACCC-GGCGATTCCCAGA i dasNov3.JH570235 C 0 I 7 e proCoq1.NW_012136747v1 5059982 157 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=13110.000000 s hg38.chr22_GL383582v2_alt 47731 2 + 162811 GA s panTro5.chr22 28813164 2 + 37823149 GA i panTro5.chr22 C 0 I 21509 s gorGor5.CYUI01015375v1 3122835 2 + 4464012 GA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607802 2 - 115148730 GA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231842 2 + 92844088 GA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577048 2 - 96509753 GA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068760 2 - 13098629 GA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036053 2 - 4483953 GA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666098 2 + 33263144 GA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930282 2 - 14338769 GA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884359 2 + 1946073 GA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911633 2 - 2117846 AA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828181 2 - 16357246 AA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1303829 2 - 1807191 AA i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36258229 2 - 42659167 TG i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 36330 2 + 1056298 GA i dasNov3.JH570235 I 7 C 0 e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5059982 157 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=7414.000000 s hg38.chr22_GL383582v2_alt 47733 2 + 162811 AG s panTro5.chr22 9002957 2 - 37823149 AG i panTro5.chr22 n 21509 C 0 s gorGor5.CYUI01015375v1 3122837 2 + 4464012 AG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607804 2 - 115148730 AG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231844 2 + 92844088 GG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577050 2 - 96509753 GG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068762 2 - 13098629 GG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036055 2 - 4483953 GG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666100 2 + 33263144 GG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930284 2 - 14338769 GG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884361 2 + 1946073 GG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911635 2 - 2117846 AG i calJac3.chrUn_GL286373 C 0 I 9144 s saiBol1.JH378157 8828183 2 - 16357246 AG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1303831 2 - 1807191 AG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36258231 1 - 42659167 A- i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 36332 2 + 1056298 GG i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5059982 157 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=76849.000000 s hg38.chr22_GL383582v2_alt 47735 10 + 162811 GTCTGCCCAG s panTro5.chr22 9002959 10 - 37823149 GTCTGCCCAG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122839 10 + 4464012 GTCTGCCCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607806 10 - 115148730 GTCTGCCCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231846 10 + 92844088 GTCTGCCCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577052 10 - 96509753 GTCTGCCCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068764 10 - 13098629 GTCTGCCCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036057 10 - 4483953 GTCTGCCCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666102 10 + 33263144 GTCTGCCCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930286 10 - 14338769 GTCTGCCCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884363 10 + 1946073 GTCTGCCAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1920781 10 - 2117846 GTCTGCCCAG i calJac3.chrUn_GL286373 I 9144 C 0 s cebCap1.NW_016107750v1 1303833 10 - 1807191 GTGTGCCCAG i cebCap1.NW_016107750v1 C 0 I 73 s otoGar3.GL873526 36258232 7 - 42659167 ---CCACCAG i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 36334 10 + 1056298 GGCTGCCCGA i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5059982 157 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e saiBol1.JH378157 8828185 0 - 16357246 C e panPan2.chr22 41106610 9145 + 50109623 I a score=59239.000000 s hg38.chr22_GL383582v2_alt 47745 8 + 162811 GACTCAGG s panTro5.chr22 9002969 8 - 37823149 GACTCAGG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122849 8 + 4464012 GACTCAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607816 8 - 115148730 GACACAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231856 8 + 92844088 GACTCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577062 8 - 96509753 GACTCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068774 8 - 13098629 GACTCAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036067 8 - 4483953 GACTCAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666112 8 + 33263144 GACTCAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930296 8 - 14338769 GACTCAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884373 8 + 1946073 GACTCAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1920791 8 - 2117846 GACTCAGG i calJac3.chrUn_GL286373 C 0 C 0 s otoGar3.GL873526 36258239 8 - 42659167 GATGCAGG i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 36344 8 + 1056298 GCCTCGGG i dasNov3.JH570235 C 0 I 32 e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5059982 157 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1303843 73 - 1807191 I e saiBol1.JH378157 8828185 0 - 16357246 C e panPan2.chr22 41106610 9145 + 50109623 I a score=209432.000000 s hg38.chr22_GL383582v2_alt 47753 36 + 162811 TAATCATATGCTCATTAGAAACTCTTGGGCACTGCC s panTro5.chr22 9002977 36 - 37823149 TAATCATATGCtcattagaaactcttgggcactgcc i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122857 36 + 4464012 TAAtcatatgctcattagaaactcctgggcactgcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607824 36 - 115148730 TAATCAGATGCtcattagaaactcttgggcactgcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231864 36 + 92844088 TAAGCAGATGCtcattagaaactcttgggcactgcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577070 36 - 96509753 TAAGCAGATGCTCATTAGAAACTCTTGGGCACTGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068782 36 - 13098629 TAAGCAGATGCTCATTAGAAACTCTTGGGCACTGCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036075 36 - 4483953 TAAGCAGATGCTCATTAGAAACTCTTGGGCACTGCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666120 36 + 33263144 TAAGCAGATGCTCATTAGAAACTCTTGGGCACTGCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930304 36 - 14338769 TAAGCAGATGCTCATTAGAAACTCTTGGGCACTGCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884381 36 + 1946073 TAAGCAGATGCTCATTAGAAACTCTTGGGCACTGCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1920799 35 - 2117846 TAAGCAGATGCTCGTTAGAAAC-CTTGAGCACTGCC i calJac3.chrUn_GL286373 C 0 T 9197 s otoGar3.GL873526 36258247 32 - 42659167 GAAGCAGATGGTCATTAGACA-TCATGGATTCC--- i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 36352 32 + 1056298 I e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5059982 157 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1303843 73 - 1807191 I e saiBol1.JH378157 8828185 0 - 16357246 C e panPan2.chr22 41106610 9145 + 50109623 I a score=6006.000000 s hg38.chr22_GL383582v2_alt 47789 1 + 162811 T s panTro5.chr22 9003013 1 - 37823149 t i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122893 1 + 4464012 t i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607860 1 - 115148730 t i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231900 1 + 92844088 t i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577106 1 - 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068818 1 - 13098629 T i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036111 1 - 4483953 T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666156 1 + 33263144 T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930340 1 - 14338769 T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884417 1 + 1946073 T i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36258279 1 - 42659167 T i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 36352 32 + 1056298 I e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5059982 157 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1303843 73 - 1807191 I e saiBol1.JH378157 8828185 0 - 16357246 C e calJac3.chrUn_GL286373 1920834 9197 - 2117846 T e panPan2.chr22 41106610 9145 + 50109623 I a score=147672.000000 s hg38.chr22_GL383582v2_alt 47790 23 + 162811 GTGTG-----CCCAGCCCAGCCCATTAT s panTro5.chr22 9003014 23 - 37823149 gtgtg-----cccagcccagcccattat i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122894 23 + 4464012 gtgtg-----cccagcccagcccattat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607861 23 - 115148730 gtgtg-----cccagcccagcccattat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231901 23 + 92844088 gtgtg-----cccagcccagcccattat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577107 23 - 96509753 GTGTG-----CCCTGCCCAGCCCATTAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068819 23 - 13098629 GTGTG-----CCCAGCCCAGCCCATTAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036112 23 - 4483953 GTGTG-----CCCAGCCCAGCCCATTGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666157 28 + 33263144 GTGTGCCCAACCCAGCCCAGCCCATTAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930341 23 - 14338769 GTGTG-----CCCAGCCCAGCCCATTGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884418 18 + 1946073 GTGTG----------CCCAGCCCATTAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911637 23 - 2117846 GTGTG-----CCCAGCCCAGCCAGTTGT i calJac3.chrUn_GL286373 T 9197 C 0 s saiBol1.JH378157 8828185 23 - 16357246 GTGTG-----CCCAGCCTAGCCAGTTGT i saiBol1.JH378157 C 0 C 0 s otoGar3.GL873526 36258280 23 - 42659167 GTGTA-----TCCTGTCCACCCAGCCGT i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 36352 32 + 1056298 I e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5059982 157 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1303843 73 - 1807191 I e panPan2.chr22 41106610 9145 + 50109623 I a score=26688.000000 s hg38.chr22_GL383582v2_alt 47813 10 + 162811 GTCGGTGAGG s panTro5.chr22 9003037 10 - 37823149 gtcggtgagg i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122917 10 + 4464012 gtcggtgagg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607884 10 - 115148730 gtcagtgagg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231924 10 + 92844088 gtcggtgagg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577130 10 - 96509753 GTCGGTGAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068842 10 - 13098629 GTCGGTGAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036135 10 - 4483953 GTCGGTGAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666185 10 + 33263144 GTCGGTGAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930364 6 - 14338769 GTCGGC---- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884436 6 + 1946073 GTTGGT---- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911660 10 - 2117846 GGTGCTGAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828208 4 - 16357246 GCT------G i saiBol1.JH378157 C 0 C 0 s otoGar3.GL873526 36258303 10 - 42659167 TTTGGAGGAT i otoGar3.GL873526 C 0 I 4 s dasNov3.JH570235 36384 10 + 1056298 GGCAGGAGGG i dasNov3.JH570235 I 32 C 0 e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5059982 157 - 6317780 I e micMur3.chr7 5639544 56144 + 108171978 I e cebCap1.NW_016107750v1 1303843 73 - 1807191 I e panPan2.chr22 41106610 9145 + 50109623 I a score=327987.000000 s hg38.chr22_GL383582v2_alt 47823 50 + 162811 ACAGACGT-GGAGGACAGCAGTCCCTGCCCTTGGTTGGG--------GCTCCAGGCCAG s panTro5.chr22 9003047 50 - 37823149 acagacgt-ggaggacagcagtccctgcccttggttggg--------gctccaggccag i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122927 50 + 4464012 acagacgt-ggaggacagcagtccctgcccttggttggg--------gctccaggccag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607894 50 - 115148730 acaaacgt-ggaggacagtggtccctgcccttggttggg--------gctccaggccag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231934 48 + 92844088 acagacat-agaggacagcggtccctgcctttggt--gg--------gctccaggccag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577140 48 - 96509753 ACAGACAT-AGAGGACAGCGGTCCCTGCCTTTGGT--GG--------GCTCCAGGCCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068852 48 - 13098629 ACAGACAT-AGAGGACAGCGGTCCCTGCCTTTGGT--GG--------GCTCCAGGCCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036145 48 - 4483953 ACAGACAT-AGAGGACAGCGGCCCCTGCCTTTGGT--GG--------GCTCCAGGCCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666195 48 + 33263144 ACAGACAT-AGAGGACAGCGGTCCCTGCCTTTGGT--GG--------GCTCCAGGCCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930370 39 - 14338769 ----------GAGGACAGCGGCCCCTGCCTTTGGT--GG--------GCTCCAGGCCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884442 39 + 1946073 ----------GAGGACAGCGGTCCCTGCCCTTGGT--GG--------GGTCCAGGCCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911670 53 - 2117846 ACAGAC----GGGGAGAGAGGTTTCTACCTTCTGT--GGGGGCTTCAGCTCCAGACCAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828212 51 - 16357246 ACAGA------GGGAGAGCGGTTCCTACCTTCCGT--GGGGGCTTCAGCTCCAGACCAA i saiBol1.JH378157 C 0 C 0 s micMur3.chr7 5695688 50 + 108171978 ACAGAGGT-GGAAGACAGTGGTCTCTGGCCTTGGTGAGG--------GCTCCAGGCCAG i micMur3.chr7 I 56144 C 0 s proCoq1.NW_012136747v1 5060139 49 - 6317780 ACAGAGGT-GGAGGACAGCAATCTCTGCCCTTGGTGAGG--------GC-CCAGGCCAG i proCoq1.NW_012136747v1 I 157 C 0 s otoGar3.GL873526 36258317 50 - 42659167 ACAGAGGG-AGAGGACAGCAGTCTCTGTTTTTTGAGGGG--------ACTTGAGGCCTA i otoGar3.GL873526 I 4 C 0 s dasNov3.JH570235 36394 40 + 1056298 ACAGAGGTGGGAAGGCAG---------CCCTCAGG--GG--------GCTCCAGGCCAA i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46071103 572 - 69331447 I e cebCap1.NW_016107750v1 1303843 73 - 1807191 I e panPan2.chr22 41106610 9145 + 50109623 I a score=78081.000000 s hg38.chr22_GL383582v2_alt 47873 6 + 162811 CAAGGG s panTro5.chr22 9003097 6 - 37823149 caaggg i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122977 6 + 4464012 caaggg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607944 6 - 115148730 caaggg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84231982 6 + 92844088 caaggg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577188 6 - 96509753 CAAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068900 6 - 13098629 CAAGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036193 6 - 4483953 CAAGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666243 6 + 33263144 CAGGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930409 6 - 14338769 CAAGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884481 6 + 1946073 CAAGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911723 6 - 2117846 CAAGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828263 6 - 16357246 CAAGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1303916 6 - 1807191 CAAGGG i cebCap1.NW_016107750v1 I 73 C 0 s micMur3.chr7 5695738 6 + 108171978 CAAGGG i micMur3.chr7 C 0 I 489 s proCoq1.NW_012136747v1 5060188 6 - 6317780 CAAGGG i proCoq1.NW_012136747v1 C 0 T 19936 s otoGar3.GL873526 36258367 6 - 42659167 CAAGGG i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 36434 5 + 1056298 -AAAAA i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46071103 572 - 69331447 I e panPan2.chr22 41106610 9145 + 50109623 I a score=2314406.000000 s hg38.chr22_GL383582v2_alt 47879 323 + 162811 CCACAGCCCCAGAAGGCAGAGCAGGAAGACAGGACTCG--G--GGCAGGTGAAGCAGCCTTCTCGTTGGCAGAAGGGAA-ACAGAAGCCCggggtggggaagggt-----------------ggggaagggtggggaagggtgggcccggggtcacacggggtaatggcagagcaaggact------agggtcagggtctc----tggctctcagc-tgcccatgccacctcctccttctctgccCGCCCCAGTGCCTTATGGGTCCAAGGTTGACTCCTGTCCCTAGGGCAGGCC---------------------------------------TGTGGGCCCT-GCCTGATCCC--TACTGGGAGGATGGTACCTAGGGTTGGAGCCAAA-CAAGTG s panTro5.chr22 9003103 342 - 37823149 ccacagccccagaaggcagagcaggaagacaggactcg--g--ggcaggtgaagcagccttctcgttggcagaagggaa-acagaagccc-------------------------------------agggtggggaagggtgggcccggggtcacacggggtaatggcagagccaggact------agggtcagggtctc----tggctctcagc-tgcccatgccacctcctcctcctctgccCGCCCCAGTGCCTCATGGGCCCAAGGTTGACTCCCATCCCTAGGGCAGGCCAGTGGCCCACAGGGCTCATACATGGCCCCTGGCCAAGCCTGTGGGCCCT-GCCTGACCCC--TACTGGGAGGATGGTACCTAGGGTTGGAGCCAAA-CAAGTG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3122983 378 + 4464012 ccacagccccagaaggcagagcaggaagacaggactcg--g--ggCAGGTGAAGCAGCCTTCTCATTGGCAGAAGGGAA-ACAGAAGCCCagggtggggaagggtggggaagggtgggaaggggggaagggtggggaagggtgggcccggggtcacacggggtaatggcagagccaggact------agggtcagggtctc----tggctctcagc-tgcccatgccacctcctccttctctgccCGCCCCAGTGCCTCATGGGCCCAAGGTTGACTCCCG-CCCTAGGGCAGGCCAGTGACCCACAGGGCTCATACATGGCCCCTGGCCAAGCCTGTGGGCCCT-GCCTTACCCC--TACCGGGAGGATGGCACCTAGGGTTGGAGCCAAA-CAAGTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106607950 304 - 115148730 ccacagccccagaaggcagagcaggaagacaggacttg--g--ggcaggtgaagtagccttctcattggcagaagggaa-acagaagccc-------------------------------------agggtggggaagggcaggcccagggtcacacggggtaatggcagagccaggact------agggtcagggtctc----tggctctcagc-tgcccatgccacctcctcctcctctgccCACCCCAGTGCCTCATGGGTCCAAGGTTGACTCCTGTAGCTATGGCAGGCC---------------------------------------TGTGGGCCCTGGCCTGACCCC--TACCGGGAGGATGGCACCTAGGGTTGGAGCCCAA-CAAGTG i nomLeu3.chr7b C 0 I 12162 s rheMac8.chr10 84231988 329 + 92844088 ctacagCCCCAGAAGGCAGAGCAGGAAGACAGGACTCA--G--GACAGCTGAAGCAGCCTTCTCATTGGCAGAAGGGAA-ACAGAAgccc----------------------------------------------------------agggtcacatggggtaatggcagagccaggactagggtcagggtcagggtctc----tggctctcagcttgcccatgccaccacctcctcctctgCCCGCCCCAGTGCCTCATAGGCCCAAGGTTGACTCCTGTCCCTAGGGCAGGCCTGTGGCCCACAGGGCTCATGCATGGCCCCTGGCCAAGCCTGTGGGCCCT-GCCTGACCCC-GTACCGGGAGGATGGCACCTAGGGTTGGAGCCCAG-CAAGTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577194 329 - 96509753 CTACAGCCCCAGAAGGCAGAGCAGGAAGACAGGACTCA--G--GGCAGCTGAAGTAGCCTTCTCATTGGCAGAAGGGAA-ACAGAAgccc----------------------------------------------------------agggtcacatggggtaatggcagagccaggactagggtcagggtcagggtctc----tggctctcagcttgcccatgccaccacCTCCTCCTCTGCCCGCCCCAGTGCCTCATAGGCCCAAGGTTGACTCCTGTCCCTAGGGCAGGCCTGTGGCCCACAGGGCTCATGCATGGCCCCTGGCCAAGCCTGTGGGCCCT-GCCTGACCCC-GTACCGGGAGGATGGCACCTAGAGTTGGAGCCCAG-CAAGTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7068906 329 - 13098629 CTACAGCCCCAGAAGGCAGAGCAGGAAGACGGGACTCA--G--GGTAGCTGAAGCAGCCTTCTCATTGGCAGAAGGGAA-ACAGAAgccc----------------------------------------------------------agggtcacatggggtaatggcagagccaggactagggtcagggtcagggtctc----tggctctcagcttgcccatgccaccaccTCCTCCTCTGCCCACCCCAGTGCCTCATAGGCCCAAGGTTGACTCCTGTCCCTAGGGCAGGCCTGTGGCCCACAGGGCTCATGCATGGCCCCTGGCCAAGCCTGTGGGCCCT-GCCTGACCCC-GTACCGGGAGGATGGCACCTAGGGTTGGAGCCCAG-CAAGTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036199 329 - 4483953 CTACAGCCCCAGAAGGCAGAGCAGGAAGACAGGACTCG--G--GGCAGCTGAAGCAGCCTTCTCATTGGCAGAAGGGAA-ACAGAAgccc----------------------------------------------------------agggtcacttggggtaatggcagagccaggactagggtcagggtcagggtctc----tggctctcagcttgtCCATGCCACCACTTCCTCCTCTGCCCGCCCCAGTGCCTCATAGGCCCAAGGTTGACTCCTGTCCCTAGGGCAGGCCTGTGGCCCACAGGGCTCATGCATGGCCCCTGGCCAAGCCTGTGGGCCCT-GCCTGACCCC-CTACCGGGAGGATGGCACCTAGGGTTGGAGCCCAG-CAAGTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666249 323 + 33263144 CTACAGCCCCagaaggcagagcaggaagacaggactca--g--ggcagctgaagcaaccttctcattggcagaagggaa-acagaagccc----------------------------------------------------------agggtcacatggggtaatggcagagccaggact------agggtcagggtctc----tggctctcagcttgcccatgccaccaccacCTCCTCTGCCTGCCCCAGTGCTTCATAGGCCCAAGGTTGACTCCTGTCCCTAGGGCAGGCCTGTGGCCCACAGGGCTCATGCATGGCCCCTGGCCAAGCCTGTGGGCCCT-GCCTGACCCC-CTACCGGGAGGATGGCACCTAGGGTTGGAGCCCAG-CAAGTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930415 323 - 14338769 CTACAGCCCCAGAAGGCAGAGCAGGAAGACAGGACTCG--G--GGCAGCTGAAGCAGCCTTCTCATTGGCAGAAGGGAA-ACAGAAgccc----------------------------------------------------------agggtcacttggggtaatggcagagccaggact------agggtcagggtctc----tggctctcagcttgtccatgccaccacctcctcctctgCCCGCCCCAGTGCCTCATAGGCCCAAGGTTGACTCCTGTCCCTAGGGCAGGCCTGTGGCCCACAGGGCTCATGCATGGCCCCTGGCCAAGCCTGTGGGCCCT-GCCTGACCCC-CTACCGGGAGGATGGCACCTAGGGTTGGAGCCCAG-CAAGTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884487 323 + 1946073 CCACAGCCCCAGAAGGCAGAGCAGGAAGACAGGACTCG--G--GGCAGCTGAAGCAGCCTTCTCATTGGCAGAAGGGAA-ACAGAAgccc----------------------------------------------------------agggtcacatggggtaatggcagagccaggact------agggtcagggtctc----tggctctcagcttgcccatgccacctcctcctcctctgcccgccccagtgcctcATAGGCCCAAGGCTGACTCCTGTCCCTAGGGCAGGCCTGTGGCCCACAGGGCTCATGCATGGCCCCTGGCCAAGCCTGTGGGCCCT-GCCTGACCCC-TTACCGGGAGGATGGCACCTAGGGTTGGAGCCCAG-CAAGTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1911729 324 - 2117846 CCAAAGCCCCagaaggcaaagcagaaagacaggactca--g--gacacctgaagcagccttcttactggcagaa-ggaa-acagaagccc-------------------------------------agggtggggaggggcaggcccagggtcacactgggtagtggcagagccaggact------agggtcagagtctctaattaattctcagc-cACCCATGCCACCA---CCTCCTCTGTTCACCCCAGTGCCTCATGGGTCCAAGGTTGACCCTTGTTCCTAGGACAGGCCTGTTGCCCCCAGGGCTCATGCAC--------------------GGCCCT-GCCTGACCCAGCCACTGGGAGAATGGC-CCTAGGGTCGGAGCCCAGACAAGCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828269 320 - 16357246 CCAAAGCCCCagaaggcagagcagaaagattggactca--g--ggcacctgaagcaggcttctcactggcagaa-ggaa-acagaagccc-------------------------------------agggtggggaggggcaggcttagggtcacactgggtagtggcagagccaggact------agggtcagagtctc----taactctgagc-cACCCACGCCACCA---CCTCCTCTGTTCACCCCAGTGCCTCATGGGTCCAAGGTTGCCCCTTGTTCCTAAGACAGGCCTGTTGCCCATAGGGCTCATGCAC--------------------GGCCCT-GCCTGACCCAGCCACCGGGAGGATGGC-CCTAAGGTCGGAGCCCAGACAAGCG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1303922 320 - 1807191 CCAAAGCCCCagaaggcacagcagaaagacaggactca--g--ggcacctgaagcagccttctcactggcagaa-ggaa-acagaagccc-------------------------------------agggtaggggggggcaggcccagggtcacactgggtagtggcagagccaggact------agggtcagagtctc----taactctcagc-cACCCACGCGACCA---CCTCCTCTGTTCACCCCAGTGCCTCATGGGTCCAAGGTTGCCCCCTGTTCCTAGGACAGGCCTGTTGCCCACAGGGCTCATGTAT--------------------GGCCCT-GCCTGACCCAGCCACCGGGAGGATGGC-CCTAAGGTCGGAGCCCAGACAAGCG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36258373 342 - 42659167 TCATTACTCCagaagtcagagaaggaagacaggactcggtg--gccacctggtgcaactttcccactggcagaagggga-acagaggccc-------------------------------------agggcaaggcgggaggagcc-acggtcactcagggaagtggcagagcaaggacc------agagccagggtctc----atcctctcagc-tggccatgccatctccttctcctctgccCACCCGAGTGCCACATGGGTTGAAAGTAGCCCCCTGTCCCT-GGGCAGGCCTGAAGCCCACACGCTCACTCCCTGG--CCTGGCCAAGCCTGTGACTCCT-GCCTGGCACAGACACTCTGAGGATGGCACCCTGGCTTGGAGCTCAG-ACAGTG i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 36439 253 + 1056298 CCCCTGCCCCAGAAGGTCAAGGCGGAAGACCTGGCCGA--GCAGCCACCCGGGACAAGGCTCTC-CTGGCAGAAGGGGACACCTGAGCCC----------------------------------------------------------AGCG-CACAGCGCGTGGTGGCAGCGTGAGGACC------AGAGCAGGCATCT-----TCCCTCTCTGT--------------------TCCCCTGCCCACCCCA-TCCCAGACAGGTCCTGGGTGGGCCCCC--CTCAAGGCCAGGCCTGCAGCCCACAGGG-----------------------------GGTCCA-GCCCCACCCC-TGGCC------ATGCTTCCTGGGG-----GCTCT-------- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5695744 489 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=6377.000000 s hg38.chr22_GL383582v2_alt 48202 3 + 162811 TCC s panTro5.chr22 9003445 3 - 37823149 TTC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3123361 3 + 4464012 TCC i gorGor5.CYUI01015375v1 C 0 C 0 s calJac3.chrUn_GL286373 1912053 3 - 2117846 TCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828589 3 - 16357246 TCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1304242 3 - 1807191 TCC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36258715 3 - 42659167 TCC i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 36692 3 + 1056298 CCC i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5695744 489 + 108171978 I e colAng1.NW_012115588v1 884810 0 + 1946073 C e manLeu1.NW_012102031v1 13930738 0 - 14338769 C e chlSab2.chr19 24666572 0 + 33263144 C e cerAty1.NW_011999588v1 4036528 0 - 4483953 C e macNem1.NW_012012688v1 7069235 0 - 13098629 C e macFas5.chr10 87577523 0 - 96509753 C e rheMac8.chr10 84232317 0 + 92844088 C e nomLeu3.chr7b 106608254 12162 - 115148730 I e panPan2.chr22 41106610 9145 + 50109623 I a score=789948.000000 s hg38.chr22_GL383582v2_alt 48205 101 + 162811 TCCTCCAGCGCC---AGCCTGGCCCTGAGTGC---GAACTCG-----------TCACTGGTCAGGGGTCCAGACAGCAGCA----TCCCTGAGGGCCCAGAG-AGGTGGCCAGTCCT--GTGGTG s panTro5.chr22 9003448 101 - 37823149 TCCTCCAGCGCC---AGCCTGGCCCCGAGTGC---AAACTCG-----------TCACTGGTCAGGGGTCCGGACAGCAGCA----TCCCTGAGGGCCCAGAG-AGGTGGCCAGTCCT--GTGGTG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3123364 101 + 4464012 TCCTCCAGCGCC---AGCCTGGCCCCGAGTGC---AAACTCG-----------TCACTGGTCAGGGGTCCGGACAGCAGCA----TCCCTGAGGGCCGAGAG-AGGGGGCCAGTCCT--GTGGTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106620416 101 - 115148730 TCCTCCAGCGCC---AGCCTGGCCCTGAGTGC---AAACTTG-----------TCACTGGTCAGGGGTCCGGATAGCAGCA----TCCCTGAGGGCCCAGAG-AGGTGGCCAGTCCT--GTGGTG i nomLeu3.chr7b I 12162 C 0 s rheMac8.chr10 84232317 101 + 92844088 TTCTCCAGCTCC---AGCCTGGCCCCAAGGGC---AAACTTG-----------CCACTGGTCAGGGGTCTGGACAGCGGCA----TGTCTGAGGACCCAGAG-AGGTGGCCAGTCGT--GTGGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577523 101 - 96509753 TTCTCCAGCTCC---AGCCTGGCCCCGAGGGC---AAACTTG-----------CCACTGGTCAGGGGTCTGGACAGCGGCA----TGTCTGAGGACCCAGAG-AGGTGGCCAGTCGT--GTGGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069235 101 - 13098629 TTCTCCAGCTCC---AGCCTGGCCCCGAGGGC---AAACTTG-----------CCACTGGTCAGGGGTCTGGACAGCGGCA----TGTCTGAGGACCCAGAG-AGGTGGCCAGTCGT--GTGGTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036528 101 - 4483953 TTCTCCAGCTCC---AGCCTGGCCCTGAGGGC---AAACTCG-----------CCACTGGTCAGGGGTCTGGACAGGAGCA----TGTCTGAGGACCCAGAG-AGGTGGCCAGTCGT--GTGGTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666572 101 + 33263144 TTCTTCAGCTCC---AGCCTGGCCCCGAGGGC---AAACTCG-----------CCACTGGTCAGGGGTCTGGACAGCGGCA----TGTCTGAGGACCCAGAG-AGGTGGCCAGTCGT--GTGGTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930738 101 - 14338769 TTCTCCAGCTCC---AGCCTGGCCCTGAGGGC---AAACTCG-----------CCACTGGTCAGGGGTCTGGACAGCAGCA----TGTCTGAGGACCCAGAG-AGGTGGCCAGTCGT--GTGGTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884810 105 + 1946073 TTCTCCAGCTCC---AGCCTGGCCCCGAGTGC---AAACTCG-----------CCACTGGTCAGGGGTCTGGACAGCAGCATGTCTGTCTGAGGACCCAGAA-AAGTGGCCAGTCGT--GTGGTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1912056 101 - 2117846 TCCTCAAGCTCC---AGCCTGGCCCCAAGTGG---AAACTTG-----------TCACTGGTCAGGCGTCTGGACAGCAGCA----TCCTTGAGGAGCTGGAG-AGGTGGCCAGTCCC--ATGGTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828592 101 - 16357246 TCCTCAAGCTCC---AGCCTGGCCCGGAGTGG---AAACTTG-----------TCACTGGTCAGACATCTGGACAGCAGCA----TCCTTGAGGACCTGGAG-AGGTGGCCAGTCCT--GTGGTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1304245 101 - 1807191 TCCTCAAGCTCC---AGCCTGGTCCTGAGTGG---AAATTTG-----------TCACTGTTCAGGCGTCTCGACAGCAGCA----TCCTTGAGGACCTGGAG-AGGTGGCCAGTCCT--GTGGTG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36258718 101 - 42659167 TGCTTCATCTCC---TGTCTGGTTCGCAGTGG---TGACTCC-----------TCACTGGTCAGGGGCCTGGACA-CAGCA----TCCCTGAGGGCTAGGGGCAGGTGGTCATTCTT--TTCTTG i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 36695 118 + 1056298 TCACCCAGCCCTCCAAGACTGGCGCCCGAGGCTCGGAGCCCGGCGCCCCAAGTCCTCCAGGCAGGGGCCTGGGCATGAGCC----TCCCTGAAGGCT--GGG-GAGTGGCCAGTCCTCCCTGGGG i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5695744 489 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=14632.000000 s hg38.chr22_GL383582v2_alt 48306 4 + 162811 -AGGT s panTro5.chr22 9003549 4 - 37823149 -AGGT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3123465 4 + 4464012 -AGGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106620517 4 - 115148730 -AGGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84232418 4 + 92844088 -AGGT i rheMac8.chr10 C 0 I 47 s macNem1.NW_012012688v1 7069336 4 - 13098629 -AGGT i macNem1.NW_012012688v1 C 0 I 47 s cerAty1.NW_011999588v1 4036629 4 - 4483953 -AGGT i cerAty1.NW_011999588v1 C 0 I 5 s chlSab2.chr19 24666673 4 + 33263144 -AGGT i chlSab2.chr19 C 0 I 5 s manLeu1.NW_012102031v1 13930839 4 - 14338769 -AGGT i manLeu1.NW_012102031v1 C 0 I 5 s colAng1.NW_012115588v1 884915 4 + 1946073 -AGGT i colAng1.NW_012115588v1 C 0 I 47 s cebCap1.NW_016107750v1 1304346 4 - 1807191 -AGGT i cebCap1.NW_016107750v1 C 0 I 5 s otoGar3.GL873526 36258819 3 - 42659167 --GGT i otoGar3.GL873526 C 0 I 3 s dasNov3.JH570235 36813 4 + 1056298 CAGC- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5695744 489 + 108171978 I e saiBol1.JH378157 8828693 0 - 16357246 C e calJac3.chrUn_GL286373 1912157 0 - 2117846 C e macFas5.chr10 87577624 0 - 96509753 C e panPan2.chr22 41106610 9145 + 50109623 I a score=4605.000000 s hg38.chr22_GL383582v2_alt 48310 4 + 162811 tgag s panTro5.chr22 9003553 4 - 37823149 tgag i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3123469 4 + 4464012 tgag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106620521 4 - 115148730 tgag i nomLeu3.chr7b C 0 C 0 s otoGar3.GL873526 36258825 4 - 42659167 TGAG i otoGar3.GL873526 I 3 C 0 s dasNov3.JH570235 36817 4 + 1056298 TCAG i dasNov3.JH570235 C 0 I 5 e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5695744 489 + 108171978 I e cebCap1.NW_016107750v1 1304350 5 - 1807191 I e saiBol1.JH378157 8828693 0 - 16357246 C e calJac3.chrUn_GL286373 1912157 0 - 2117846 C e colAng1.NW_012115588v1 884919 47 + 1946073 I e manLeu1.NW_012102031v1 13930843 5 - 14338769 I e chlSab2.chr19 24666677 5 + 33263144 I e cerAty1.NW_011999588v1 4036633 5 - 4483953 I e macNem1.NW_012012688v1 7069340 47 - 13098629 I e macFas5.chr10 87577624 0 - 96509753 C e rheMac8.chr10 84232422 47 + 92844088 I e panPan2.chr22 41106610 9145 + 50109623 I a score=22523.000000 s hg38.chr22_GL383582v2_alt 48314 37 + 162811 aggtgtcaacgtgct----ggtggtcctcgctcgctctcag s panTro5.chr22 9003557 37 - 37823149 aggggtcaacgtgct----ggcggtccttgcttgctctcag i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3123473 37 + 4464012 aggtgtcaacgtgct----ggcggtcctcgctcgctctcag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106620525 37 - 115148730 aggtgtcaacgtgct----ggcggtcctcgcttgttcttag i nomLeu3.chr7b C 0 C 0 s dasNov3.JH570235 36826 41 + 1056298 AGGGGGCAGCTCACTCCCGGGCGGTCGTCAGTCTTTCCCAG i dasNov3.JH570235 I 5 I 8536 e canFam3.chr10 46071103 572 - 69331447 I e otoGar3.GL873526 36258829 0 - 42659167 C e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5695744 489 + 108171978 I e cebCap1.NW_016107750v1 1304350 5 - 1807191 I e saiBol1.JH378157 8828693 0 - 16357246 C e calJac3.chrUn_GL286373 1912157 0 - 2117846 C e colAng1.NW_012115588v1 884919 47 + 1946073 I e manLeu1.NW_012102031v1 13930843 5 - 14338769 I e chlSab2.chr19 24666677 5 + 33263144 I e cerAty1.NW_011999588v1 4036633 5 - 4483953 I e macNem1.NW_012012688v1 7069340 47 - 13098629 I e macFas5.chr10 87577624 0 - 96509753 C e rheMac8.chr10 84232422 47 + 92844088 I e panPan2.chr22 41106610 9145 + 50109623 I a score=748684.000000 s hg38.chr22_GL383582v2_alt 48351 1517 + 162811 cgcctcctcggcctcagcttctgctctgaccacacttgaggagcccttcagcccagcgctgcactgtgggagcccctctctggactggtggaggctggagccggctccgtctgcttgcggggaggtatggagggagaggcgtgtgcgggaacctgggttgctcgcgggccagcaccagttctgggtgggcaggggctcagcgggccctgcactcggagcggccggctggtgcctctggccccaggcagtgaggggcttagcacctgggccagcagctgcagagggggcaccgggtcccccagtactgctggcctgccggcgctcaccacacttgaattgtcgccaggcctcagtcacctccccgcggggcagggctcaggacttgcagcctgccatgcccaagcctccctacggtgggctccctgcgaggcccgagcctcccggatgggtgcctcccactgctccacggcacctggtcccgtccactgcccaagggctgaggagtacaggtgcccggtgtgggactagcaggcagctctgcctgtggccctggcataggatccactaggcgaagctggctgggctcctgagtcaggtggggacttggagaacttttatgtctagccagaggattgtatatgcaccaatcagcactctgtgtctagctccgggttcgtgcatgcaccaattagcactct--atctagctaatctggtggggacttggggaacctttatttctagctaaaagattgtaaatacaccaatcagcactctgtgtctagctcaaggtttgtaaacacaccagtcagcaccctgtgtctaactcaaggtttgtaaacgcaccaatcagtgctctctgtctactctatctagctaatctagtggggactgggacaacctttatgtctagctaagggattgtaaatacaccattcagcactctgtgtctagctcaaggtttgtaaatataccaatcagtactctgtgtctagctcagggattgtaaatgcaccaatcagc-------------------------tctctgtaagtggaccaatccactgtctgtaaaatgggccaatcagcaggatgtgggtgg-gggtcagataagggaataaaagcaggctgcctgaagtagcagcggcaacctggttgccatcattcttttgctgtttgcagtaagtcttgctgctgctgctccctcattgggtccacactgcctttatgagttgtaacactggaaggactgcagtttcactcctgaggccagtgagaccacaaacccaccaggaagaatgaacaactccgtacgtgc---------agccttaagagccgtaacactcactgtgaaggtctgcagcttcactcctgaagccagcaagaccacgcacccaccagaaggaagaaactctgaacacgtcttaacatcagaaggaacaaactctgaacacaccatctttaagaactgtaacactcaccgtgagggtccacggcttcattcttgaagtcagtgagaccaagaacccaccaattttggacaca s panTro5.chr22 9003594 1541 - 37823149 cgcctcctcggcctcagcatctgctctgaccacacttgaggagcccttcagcccagcgctgcactgtaggagcccctctctgggctggtggaggctggagccggctccctctgcttgtggggaggtatggagggagaggcgtgggcgggaacctgggttgctcgcgggccagcaccagttctgggtggccaggggctcagcgggccctgcactcacagcggccggctggtgcctccggccccaggcagtgaggggcttagcacctgggccagcagctgcagagggggcgccgggtcccccagtactgctggcc-gccggcacgcaccacacttgaattgtcgccaggcctcagttgcctccccgcggggcagggctcaggacctgcagcctgccatgcccaagcctccctacggtgggctccctgcaaggcccgagcctcccggatgggtgcctcccactgctccacggcacctggtcccgtccactgcccaagggctgaggagtacaggtgcccagtgtgggactggcaggcagctctgcctgtggccctggcataggatccactaggcgaagctggctgggctcctgaatcaggtggggacttggagaacttttatgtctagccagaggattgtatatgcaccaatcagcactctgtgtgtagctccgggttcgtggatgcaccagttagcactctgtatctagctaatctggtggggacttggggaacctttatttctagctaaaagattgtaaatacaccaatcagcactctgtgtctagctcaaggtttgtaaacacaccaatcagcaccctgtgtctaactcaaggtttgtaaacgcaccaatcagtgctctctgtctactctatctagctaatctagtggggacttggacaacctttatgtctagctaagggattgtaaatacaccattcagcactctgtgtctagctcaaggtttgtaaatataccaatcagcactctgtgtctagctcagggattgtaaatgcaccaatcagcaccctgtcaaaatggaccaatcaactctctgtaagtggaccaatccactgtctgtaaaatgggccaatcagcaggatgtgggtggagggtcagataagggaataaaagcaggctgcctgaagtagcagcggcaacctggttgccatccttcttttgctgtttgcagtaagtcttgctgctgct---ccctcattgggtccacactgcctttatgagttgtaacactggaaggactgcagtttcactcctgaggccagtgagaccacaaacccaccaggaagaatgaacaactccgtacgtgc---------cgccttaagagccgtaacactcactgtgaaggtctgcagcttcactcctgaagccagcaagaccatgcacccaccagaaggaagaaactctgaacacgtcttaacatcagaaggaacaaactctgaacacaccatctttaagaactgtaacactcactgcgagggtccacggcttcattcttgaagtcagtgagaccaagaacccaccaattttggacaca i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3123510 1507 + 4464012 cacctcctcagcctcagcgtctgctctgaccacacttgaggagcccttcagcccagcgctgcactgtgggagcccctctctgggctggtggaggctggagccaactccctctgcttgcggggaggtatggagggagaggcgtgggcaggaacctgggttgctcacgggccagcaccagttccgggtgggcaggggctcagcgggccctgcactcggagcagccagctggtgcctccagccccaggcagtgaggggcttagcacctgggccagcagctgcggagggggcgttgggtcccccagtactgctggcccgccggcgcgcaccacacttgaattgtcgccaggcctcagtcacctccccgcggggcagggttcgggacctgcagcctgccatgcccaagcctccccatggtgggctccctgcgaggcccgagcctcccacacgggtgcctcccactgctccacggcacctggtcccatccactgcccaagggctgaggagtgcaggtgcccggcgtgggactggcaggcagctctgcctgtggccctggcataggatccactaggcgaagctggctggactcctgagtcacgtggggacttggagaacttttatgtctagccagaggattgtatatgcaccaatcagcactctgtgtctagctccgggtttgtggatgcaccagttagcactctgtatctagctaatctggtgggtacttggggaacctttatttctagctaaaagattgtaaatacaccaatcagcactctgtgtctagctcaaagtttgtaaacacaccaatcagcaccctgtgtctagctgaaggtttgtaaacgcaccaatcagtgctctctgtctactctatctagctaatctagtggggacttggacaacctttatgtctagctaagggattgtaaatacaccattcagcactctgtgtgtagttcaaggtttgtaaatataccaatcagcactctgtgtctagctcagggattgtaaatgcaccaatcagcaccctgtcaaaatggaccaatcagctctctgtaagtggaccaatccgctgtctgtaaaatgggccaatcagcaggatgtgggtg--gggtcagataagggaataaaagcaggctgcctgaagtggcagcggcaacctggttgccatcgttcttttgctgtttgcagtgagtcttcctgctgct---cactcattgggtccacactgcctttatgagttgtaacactggaaggactgcagtttcactcctgaggccagtgagaccacaaacccaccaggaagaatgaacaactccgtgcgtgc---------cgccttaagagccgtaacactcactgtgaaggtctgcagcttcactcctgaagccagcaagaccacgcacccac---------------------------------cagaaggaacaaactctgaacacaccatctttaagaactgtaacactcaccgtgagggtccacagcttcattctggaagtcagtgagaccaagaacccaccaattttggacaca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106620562 1520 - 115148730 cgcctccttggcctcagcgtctgctctgaccacgcttgagaagcccttcagcctgctgctgcactgtgggagcccctctctgggctggtagaggctggagccagctccctttgcttgtggggagttatggaggtagatgcgcaggtgggaacctgggttgctcgcaggccagcgccagttccgggtgggcaggggctcagtgggccctgcactcggagcggctggccggcgcctccagccccaggcagtgaggggcttagctcctgggccagcagttgcagaggggacaccgggtcccccagcactgccagcccgcccgcgcgcaccacacttgaattctcgccaggccttagtcgcctccccgcggggcagggctcaggacctgcagcttgccatgcctgagcctccccacggtgggctccctgtgaggcccgagcctccctgacaggcgcctcccactgctccgcggcgcctagtctcatccactgcccaagggctgaggagtgcagttgcccggcgtgggactggcgggtagctccgcctgcggccctggcatgggatccactaggcgaagtcggctgggcccctgagttgggtggggacttggagaacttttatgtctagtcagaggattatatatgcaccaatcagcactctgtttctagctctgggtttgtggatgcaccaattagcactctgtatctagctaatctggtggggacttggagaacctttatttctagctaaaagattgtaaatacaccaatcagcactccgtgtctagctcaagaattgtaaacacaccaatcagcaccctgtatctagctcaaggtttgtaaatgcaccaatcagtgctctgtgtctcgttaat--------tctagtggggacttggagaactttcaggtctagctagaggattgtaaatacaccaatcagcactctgtgtctagctcagggattgtaaatg-accaatcagcaccctg--------tca--------aaatggaccaatcggctctctgt--aagtggaccaatcggctctctgtaagtggaccaatcagctctctgtaaaatgggccaatcagcaggatgtgggtg--gggtcagataagggaataaaagcaggctgcccgaatcaacagcagcaacctgctcaccatcattcttttgttgtttgcgataagtcttgctgctgct---cactcattgggtgtacactgcctttatgagttgtaacacgggaaggtctgcagcttcactcctgaggccagtgagaccacaaacccaccgggaagaatgaacaactccggatgtactgccttaggagccttaagagccgtaacactcac--tgaaagtctgcagcttcactcctgaagccagcaagaccacgcacccaccagaaggaagaaactctgaacacgtctgaacatcaaaaggaacaaactctgaacacagcgtatttaagaactgtaacactcactgtgagggtccatggcttcattctcaaagtcagtgagaccaagaactcaccaattttggacaca i nomLeu3.chr7b C 0 C 0 e dasNov3.JH570235 36867 8536 + 1056298 I e canFam3.chr10 46071103 572 - 69331447 I e otoGar3.GL873526 36258829 0 - 42659167 C e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5695744 489 + 108171978 I e cebCap1.NW_016107750v1 1304350 5 - 1807191 I e saiBol1.JH378157 8828693 0 - 16357246 C e calJac3.chrUn_GL286373 1912157 0 - 2117846 C e colAng1.NW_012115588v1 884919 47 + 1946073 I e manLeu1.NW_012102031v1 13930843 5 - 14338769 I e chlSab2.chr19 24666677 5 + 33263144 I e cerAty1.NW_011999588v1 4036633 5 - 4483953 I e macNem1.NW_012012688v1 7069340 47 - 13098629 I e macFas5.chr10 87577624 0 - 96509753 C e rheMac8.chr10 84232422 47 + 92844088 I e panPan2.chr22 41106610 9145 + 50109623 I a score=13347.000000 s hg38.chr22_GL383582v2_alt 49868 7 + 162811 AGGTGAC s panTro5.chr22 9005135 7 - 37823149 AGGTGAC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125017 7 + 4464012 AGGTGAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622082 7 - 115148730 AGGTGAC i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87577624 7 - 96509753 AGGTGAC i macFas5.chr10 C 0 I 2 s calJac3.chrUn_GL286373 1912157 7 - 2117846 AGGTGAC i calJac3.chrUn_GL286373 C 0 I 2 s saiBol1.JH378157 8828693 7 - 16357246 AGGTGAT i saiBol1.JH378157 C 0 I 2 e dasNov3.JH570235 36867 8536 + 1056298 I e canFam3.chr10 46071103 572 - 69331447 I e otoGar3.GL873526 36258829 0 - 42659167 C e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5695744 489 + 108171978 I e cebCap1.NW_016107750v1 1304350 5 - 1807191 I e colAng1.NW_012115588v1 884919 47 + 1946073 I e manLeu1.NW_012102031v1 13930843 5 - 14338769 I e chlSab2.chr19 24666677 5 + 33263144 I e cerAty1.NW_011999588v1 4036633 5 - 4483953 I e macNem1.NW_012012688v1 7069340 47 - 13098629 I e rheMac8.chr10 84232422 47 + 92844088 I e panPan2.chr22 41106610 9145 + 50109623 I a score=143909.000000 s hg38.chr22_GL383582v2_alt 49875 28 + 162811 AGGCTGAGGGCGGTGGCTCGGTCCTGGG s panTro5.chr22 9005142 28 - 37823149 AGGCTGAGGGCGGTGGCTCGGTCCTGGG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125024 28 + 4464012 AGGCTGAGGGCGGTGGCTTGGTCCTGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622089 28 - 115148730 AGGCTGAGGGCCGCGGCTCGGTCCTGGG i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87577633 28 - 96509753 AGGCTGAGGACGGTGGCTTAGTCCCGGG i macFas5.chr10 I 2 C 0 s cerAty1.NW_011999588v1 4036638 28 - 4483953 AGGCTGAGGGCGGTGGCTTAGTCCTGGG i cerAty1.NW_011999588v1 I 5 I 14 s chlSab2.chr19 24666682 28 + 33263144 AGGCTGAGGGCGGTGGCTTAGTCCTGGG i chlSab2.chr19 I 5 I 14 s manLeu1.NW_012102031v1 13930848 28 - 14338769 AGGCTGAGGGCGGTGGCTTAGTCCTGGG i manLeu1.NW_012102031v1 I 5 I 14 s calJac3.chrUn_GL286373 1912166 28 - 2117846 AGGCTGAGGGTGATGGCTCAGTCCTGGG i calJac3.chrUn_GL286373 I 2 C 0 s saiBol1.JH378157 8828702 28 - 16357246 AGGCTGGGGGTGATGGCTCAGTCCTGGG i saiBol1.JH378157 I 2 C 0 s cebCap1.NW_016107750v1 1304355 28 - 1807191 AGGCTGAGGGTGATGGCTCAGTCTTGGG i cebCap1.NW_016107750v1 I 5 C 0 s otoGar3.GL873526 36258829 28 - 42659167 AGGCTCAGGGAGGTGGCTCCCTCCTGGT i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 36867 8536 + 1056298 I e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5695744 489 + 108171978 I e colAng1.NW_012115588v1 884919 47 + 1946073 I e macNem1.NW_012012688v1 7069340 47 - 13098629 I e rheMac8.chr10 84232422 47 + 92844088 I e panPan2.chr22 41106610 9145 + 50109623 I a score=10136.000000 s hg38.chr22_GL383582v2_alt 49903 6 + 162811 TTTTCC- s panTro5.chr22 9005170 6 - 37823149 TTTTCC- i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125052 6 + 4464012 TTTTCC- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622117 6 - 115148730 TTTTCC- i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87577661 5 - 96509753 -CTTCC- i macFas5.chr10 C 0 I 9 s calJac3.chrUn_GL286373 1912194 5 - 2117846 -CTTCC- i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8828730 5 - 16357246 -CTTTC- i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1304383 5 - 1807191 -CTTCC- i cebCap1.NW_016107750v1 C 0 I 1 s otoGar3.GL873526 36258857 6 - 42659167 -CTTCCA i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 36867 8536 + 1056298 I e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5695744 489 + 108171978 I e colAng1.NW_012115588v1 884919 47 + 1946073 I e manLeu1.NW_012102031v1 13930876 14 - 14338769 I e chlSab2.chr19 24666710 14 + 33263144 I e cerAty1.NW_011999588v1 4036666 14 - 4483953 I e macNem1.NW_012012688v1 7069340 47 - 13098629 I e rheMac8.chr10 84232422 47 + 92844088 I e panPan2.chr22 41106610 9145 + 50109623 I a score=49340.000000 s hg38.chr22_GL383582v2_alt 49909 6 + 162811 TGGGGC s panTro5.chr22 9005176 6 - 37823149 TGGGGC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125058 6 + 4464012 TGGGGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622123 6 - 115148730 TGGGGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84232469 6 + 92844088 TGGGGC i rheMac8.chr10 I 47 C 0 s macFas5.chr10 87577675 6 - 96509753 TGGGGC i macFas5.chr10 I 9 C 0 s macNem1.NW_012012688v1 7069387 6 - 13098629 TGGGGC i macNem1.NW_012012688v1 I 47 C 0 s cerAty1.NW_011999588v1 4036680 6 - 4483953 TGGGGC i cerAty1.NW_011999588v1 I 14 C 0 s chlSab2.chr19 24666724 6 + 33263144 TGGGGC i chlSab2.chr19 I 14 C 0 s manLeu1.NW_012102031v1 13930890 6 - 14338769 TGGGGC i manLeu1.NW_012102031v1 I 14 C 0 s colAng1.NW_012115588v1 884966 6 + 1946073 TGGGGC i colAng1.NW_012115588v1 I 47 C 0 s calJac3.chrUn_GL286373 1912200 6 - 2117846 TGGGTC i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8828736 6 - 16357246 TGGGTC i saiBol1.JH378157 I 1 C 0 s cebCap1.NW_016107750v1 1304389 6 - 1807191 TGGGTC i cebCap1.NW_016107750v1 I 1 C 0 s otoGar3.GL873526 36258863 6 - 42659167 TCAGGC i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 36867 8536 + 1056298 I e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5695744 489 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=508609.000000 s hg38.chr22_GL383582v2_alt 49915 57 + 162811 CTTCCCAGGGAATGTTCTGGCACCTGCCGACTGAG-CCCTGGGAGGTAGCCCTGGCAT s panTro5.chr22 9005182 57 - 37823149 CTTCCCAGGGAATGTTCTGGCACCTGCCGACTGAG-CCCTGGGAGGTAGCCCTGGCAT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125064 57 + 4464012 CTTCCCAGGGAATGTTCTGGCACCTGCCGACTGAG-CCCTGGGAGGTAGCCCTGGCAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622129 57 - 115148730 CTTCCCAGGGAACTTTCTGGCACCTGCTGACTGAA-CGCTGGGCGGTAACGCTGGCAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84232475 57 + 92844088 CTTCCCAGGGAACGTTCTGGCACCTGCTGACTGAG-GTCTGGGAGGTAGCCCTGGCAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577681 57 - 96509753 CTTCCCAGGGAACGTTCTGGCACCTGCTGACTGAG-GTCTGGGAGGTAGCCCTGGCAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069393 57 - 13098629 CTTCCCAGGGAACGTTCTGGCACCTGCTGACTGAG-GTCTGGGAGGTAGCCCTGGCAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036686 57 - 4483953 CTTCCCAGGGAACGTTCTGGCACCTGCTGACTGAG-CTCTGGGAGGTAGCCCTGGCAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666730 57 + 33263144 CTTCCCAGGGAACGTTCTGGCACCTGCTGACTGAG-CTCTGGGAGGTAGCCCTGGCAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930896 57 - 14338769 CTTCCCAGGGAACGTTCTGGCACCTGCTGACTGAG-CTCTGGGAGGTAGCCCTGGCAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 884972 57 + 1946073 CTTCCCAGGGAACGTTCTGGTACCTGCTGACTGAG-CTCTGGGAGGGAGCCCTGGCAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1912206 57 - 2117846 CTTCCCAGTGAACGTTCTGGCAGCTGCCGACTGAA-CCCTGGGAAGTGACCCTGGCAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828742 58 - 16357246 CTTCCCAGGGAACATTCTGGCAGTTGCCGACTGAACCCCTGGGAAGTAACCCCGGCAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1304395 56 - 1807191 CTTCCCAG-GAATGTTCTGGCAGCTGCCGACTGAA-CCCTGGGAAGTAACCCCGGCAC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5696233 57 + 108171978 CTTCCCAGAGAATGTTCTGGCACCTGATGACTCAG-CCGTGGCTGGTAACCCTGGCAT i micMur3.chr7 I 489 T 32975 s otoGar3.GL873526 36258869 57 - 42659167 CTTCCCAGGGAACGTTCTGGCACCTGATGTTTGAG-GCATGAGTGGTCACCTTGGCTC i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 36867 8536 + 1056298 I e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e panPan2.chr22 41106610 9145 + 50109623 I a score=278217.000000 s hg38.chr22_GL383582v2_alt 49972 44 + 162811 ATAGCTCCCTGA-----CATGATTTGTCTTCCATTTT-GGGGTGTCATAT s panTro5.chr22 9005239 47 - 37823149 ATAGCTCCCTGATG--CCATGATTTGTCTTCCGTTTT-GGGGTGTCATAT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125121 47 + 4464012 ATAGCTCCCTGATG--CCATGATTTGTCTTCCGTTTT-GGGGTGTCATAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622186 47 - 115148730 ATAGCTCCCTGATG--CTATGATTTGTCTTCCTTTTT-GGAGTGTCATAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84232532 46 + 92844088 ATA-GTCCCTGATG--CTATGATTTGTCTTCCTTTTT-GGAGTGTCACAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577738 46 - 96509753 ATA-GTCCCTGATG--CCATGATTTGTCTTCCTTTTT-GGAGTGTCACAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069450 46 - 13098629 ATA-GTCCCTGATG--CCATGATTTGTCTTCCTTTTT-GGAGTGTCATAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036743 47 - 4483953 CTAGGTCCCTGATG--CCATGATTTGTCTTCCTTTTT-GGAGTGTCATAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666787 47 + 33263144 ATAAGTCCCTGATG--CCATGATTTGTCTTCCTTTTT-GGAGTGTCATTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13930953 47 - 14338769 CTAGGTCCCTGATG--CCATGATTTGTCTTCCTTTTT-GGAGTGTCATAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885029 47 + 1946073 AGAGCTCCCTGATG--CCATGATTTGTCTTCCTTTTT-GGAGTGTCATAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1912263 49 - 2117846 AAAGCTCCCTGACTCTCCATGATTTGTCTTTTATTTT-GGGGTGTCATAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828800 49 - 16357246 AAAGCTCCCTGACTCCCTATGATTCGTCTTTTATTTT-GGGGTGTCGTAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1304451 49 - 1807191 AGAGCTCCCTGACTCTCCATGATTCGTCTTTTATTTT-GTGGCGTCGTAT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36258926 41 - 42659167 ---GGTGCTTTCTG------GATTTCTCTGCCCTCTTAGGGGTGTTGAAT i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 36867 8536 + 1056298 I e canFam3.chr10 46071103 572 - 69331447 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5696290 32975 + 108171978 T e panPan2.chr22 41106610 9145 + 50109623 I a score=578698.000000 s hg38.chr22_GL383582v2_alt 50016 74 + 162811 ATGAAGGGAGGTGACTGTTGTGATGGTGCTGGCAGGACTGCTGTCCC-TGATGTGGGGTGGGC-TGAGTTAGGCCT s panTro5.chr22 9005286 74 - 37823149 ATGAAGGGAGGTGACTGTTGTGATGGTGCTGGCAGGACTGCTGTCCC-TGATGTGGGGTGGGC-TGAGTTAGGCCT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125168 74 + 4464012 ATGAAGGGAGGTGACTGTTGTGATGGTGCTGGCAGGACTGCTGCCCC-TGATGTGGGGTGGGC-TGAGTTAGGCCT i gorGor5.CYUI01015375v1 C 0 I 325 s nomLeu3.chr7b 106622233 74 - 115148730 AGGAAGGGAGGTGACTGTTGTGATGGTGCTGGCAGGACTGCTGCCCC-TGATGTGGGGTGGGT-TGAGTTAGGCCT i nomLeu3.chr7b C 0 I 313 s rheMac8.chr10 84232578 74 + 92844088 ACGAAAGGAGGTAACTGTTGTGATGGTGCTGGCGGGACCGCTGCCCC-TGATGGGGGGTGGGC-TGAGTTAGGCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577784 74 - 96509753 ATGAAAGGAGGTAACTGTTGTGATGGTGCTGGCGGGACCGCTGCCCC-TGATGGGGGGTGGGC-TGAGTTAGGCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069496 74 - 13098629 ATGAAAGGAGGTAACTGTTGTGATGGTGCTGGCGGGACCGCTGCCCC-TGATGAGGGGTGGGC-TGAGTTAGGCCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036790 74 - 4483953 ATGAAAGGAGGTAACTGTTGTGATGGTGCTGGCGGGACCGCTGCCCC-TGATGGGGGGTGGGC-TGAGTTAGGCCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666834 74 + 33263144 ATGAAAGGAGATAACTGTTGTGATGGTGCTGGCGGGACCGCTGCCCC-TGATGGGGGGTGGGC-TGAGTTAGGCCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931000 74 - 14338769 ATGAAAGGAGGTAACTGTTGTGATGGTGCTGGCGGGACCGCTGCCCC-TGATGGGGGGTGGGC-TGAGTTAGGCCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885076 74 + 1946073 ATGAAAGGAGGTTACTGTTGTGATGGTGCTGGCAGGACCACTGCCCC-TGATGAGGGGTGGGC-TGAGTTAGGCCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1912312 60 - 2117846 -------------ACTGTTGTGATGGTGCTGGTGGGACCACTGCCCC--AATGTAGGGTAGAC-TGAGTCGGGCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828849 75 - 16357246 ATGAAGGGAGGTCACTGCTGTGATGGTGCTGGTGGGACTGCTGCCCC-TGATGTAGGGTAGACTTGAGTCGGGCCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1304500 73 - 1807191 ACGAAGGGAGGTCACTGTTGTGATGGCGCTGGTGGGACTGCTGCCCC--GATGTAGGGTAGAC-TGAGTCGGGCCC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36258967 66 - 42659167 GTGAAATGA----ACTGT--GGGTGGTGCCTGCAAGGCAGCTGGCCC---ATGTGGGGTGGGT-GCAGTAGGGACT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46071675 75 - 69331447 ATAGGGGAATGCGATAGAGGAGTTGGTGCCGGCCGAGCTGCTGGCCCGTGGGGTGGGGTGGGC-GGTGTTGGACCT i canFam3.chr10 I 572 C 0 e dasNov3.JH570235 36867 8536 + 1056298 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5696290 32975 + 108171978 T e panPan2.chr22 41106610 9145 + 50109623 I a score=298243.000000 s hg38.chr22_GL383582v2_alt 50090 34 + 162811 GAAATATGGGCCTCC--AGGCTGAGTCCTGCCCTCT s panTro5.chr22 9005360 34 - 37823149 GAAATATGGGCCTCC--AGGCTGAGTCCTGCCCTCT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125567 34 + 4464012 GAAATATGGGCCTCC--AGGCTGAGTTCTGCCCTCT i gorGor5.CYUI01015375v1 I 325 C 0 s nomLeu3.chr7b 106622620 34 - 115148730 gaaaTGTGGGCCTCC--AGGCTGAGTCCTGCCCTCT i nomLeu3.chr7b I 313 C 0 s rheMac8.chr10 84232652 34 + 92844088 GAAATGTGGGCCTCC--AGGCTGAGTCCTGCCCTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577858 34 - 96509753 GAAATGTGGGCCTCC--AGGCTGAGTCCTGCCCTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069570 34 - 13098629 GAAATGTGGGCCTCC--AGGCTGAGTCCTGCCCTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036864 34 - 4483953 GAAATGTGGGCCTCC--AGGCTGAGTCCTGCCCTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666908 34 + 33263144 GAAATGTGGGCCTCC--AGGCTGAGTCCTGCCCTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931074 34 - 14338769 GAAATGTGGGCCTCC--AGGCTGAGTCCTGCCCTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885150 34 + 1946073 GAAATGTGGGCCTCC--AGGCTGAGTCCTGCCCTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1912372 34 - 2117846 GAATTGTGGGCCTCC--AGGCTGAGTACTGCCCTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828924 36 - 16357246 GAACTGTGGGCCTCTCAAGGCTGAGTACTGCCCTCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1304573 34 - 1807191 GAACTGTGGGCCTCC--AGGCTGAGTACTGCCCTCT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36259033 21 - 42659167 CCAGTGTGGTTCTCC--AGGCTG------------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46071750 34 - 69331447 GAGATGCGGGTGTCC--AGGCTGAGCGGGGTCCTCT i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 36867 8536 + 1056298 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5696290 32975 + 108171978 T e panPan2.chr22 41106610 9145 + 50109623 I a score=888489.000000 s hg38.chr22_GL383582v2_alt 50124 127 + 162811 CCACCACATCCAGGG--CTGAC---TGACA----CCTCTAGTCAGCCCATTC----TGGCCCCTT-CCCCACATGCCAGGA----------C---AATGT--AGTCCTTGTCACCAATCTGGGCAGTCAGAGTT------GGG--TCAGTGGGGGACATGGGAT s panTro5.chr22 9005394 127 - 37823149 CCACCACATCCAGGG--CTGAC---TGACA----CCTCTAGTCAGCCCATTC----TGGCCCCTT-CCCCACATGCCAGGA----------C---AATGT--AGTCCTTGTCACCAATCTGGGCAGTCAGAGTT------GGG--TCAGTGGGGGACATGGGAT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125601 125 + 4464012 CCACCACATCCAGGG--CTGAC---TGACA----CCTCTAGTCAGTCCATTC----TGGCCCCTT-CCCCAGATGCCAGGA----------C---AATGT--AGTCCTTGTCACCAATCTGGGCAGTCAGAGTT------GGG--TCAGT--GGGACATGGGAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622654 127 - 115148730 CCACCACATCCAGGG--CTGAC---TGACA----CCTCTAGTCAGTCCATTC----TGGCCCCTT-CCCCAGATGCCAGGA----------C---AATGT--AGTCCTTGTCACCAATCTGAGCAGTCAGAGTT------GGG--TCAGTGGGGGACATGGGAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84232686 119 + 92844088 CCACCACACTCAGGG------C---TGACA----CCTCTAGTCAGCCCATTC----TGGCTCCTTCCCCCAGATGCCAGAA----------C---AATGT--AGTTCTTGTCACCAATCTGGG----CAGAGTT------GGG--TCAGT-GGGGACATGGGAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87577892 119 - 96509753 CCACCACACTCAGGG------C---TGACA----CCTCTAGTCAGCCCATTC----TGGCTCCTTCCCCCAGATGCCAGAA----------C---AATGT--AGTTCTTGTCACCAATCTGGG----CAGAGTT------GGG--TCAGT-GGGGACATGGGAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069604 119 - 13098629 CCACCACACTCAGGG------C---TGACA----CCTCTAGTCAGCCCATTC----TGGCTCCTTCCCCCAGATGCCAGAA----------C---AATGT--AGTTCTTGTCACCAATCTGGG----CAGAGTT------GGG--TCAGT-GGGGACATGGGAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4036898 120 - 4483953 CCACCACACTCAGGG------C---TGACA----CCTCTAGTCAGCCCATTC----TGGCTCCTTCCCCCAGATGCCAGAA----------C---AATGT--AGTTCTTGTCACCAATCTGGG----CAGAGTT------GGG--TCAGTGGGGGACATGGGAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24666942 120 + 33263144 CCACCACACTCAGGG------C---TGACA----CCTCTAGTCAGCCCATTC----TGGCTCCTTCCCCCAGATGCCAGAA----------C---AATGT--AGTTCTTGTCACCAATCTGGG----CAGAGTT------GGG--TCAGTGGGGGACGTGGGAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931108 120 - 14338769 CCACCACACTCAGGG------C---TGACA----CCTCTAGTCAGCCCATTC----TGGCTCCTTCCCCCAGATGCCAGAA----------C---AATGT--AGTTCTTGTCACCAATCTGGG----CAGAGTT------GGG--TCAGTGGGGGACATGGGAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885184 120 + 1946073 CCACCACACTCAGGG------C---TGCCA----CCTCTAGTCCACCCATTC----TGGCTTCTTCCCCCAGATGCCAGAA----------C---AATGT--AATTCTTGTCACCAATCTGGG----CAGAGTT------GGG--TCAGTGGGGGACATGGGAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1912406 121 - 2117846 CCGCCACACCCAGGG--CTGACTGACAACA----CCTCTAGTCAGCCCACTC----TGGCCCCTT-CCCTAGAAGCTGGGA----------C---AACGTACAGTTCGTGTCAC---------CAGTCAGAGAT------GGG--TCAGTGGGGGAC--GGGAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8828960 129 - 16357246 CCACCATACCCAGGG--CTGAC---CGACA----CCTCTAGTCAGCCCATTC----TGGCCCCTT-CCCTAGATGCTGGGA----------C---AATGTACAGTTCATGTCACCAATCTGGGCAGTCAGAGAT------GGA--TCAGTGGAGGACATGGGAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1304607 129 - 1807191 CCACCACACCCAGGG--CTGAC---CGACA----CCTCTAGTCAGCCCATTC----TGGCCCCTT-CCCTAGATGCTGGGA----------C---AATGTACAGTTTGTGTCACCAATCTGGGCAGTCAGAGAT------GGG--TCAGTGGGGGACATGGGAT i cebCap1.NW_016107750v1 C 0 I 41 s otoGar3.GL873526 36259054 129 - 42659167 ------TTCCCAGTGTCCTGAC---TGCTG----CCTCTCTGTGGCCCAGTC----TGGCAACTT-CTTCAGAAGCTAGGA----------T---CAGGT--AGTCCTTGTCACCAGTCGGGGCAGACAGAGTTGATCGGGGG--TGAGCGGGTGCCCTAGAGT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46071784 130 - 69331447 CAGCCCCACTAGGGC--CCAGC---TGAGG----GCTCTCAGCAGCTTGTTC----TAGATCTTCCCGCCACGAACAAGGA----------CCTAAATAT--AGACATGGTCACTAACCAAGT-AGCCAGTATT------GGGGCTCTGTGGGCAACTAGGG-- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 45403 145 + 1056298 CCAGCCCAGCCAGGG-----AC---TGAGCCCATCCTCTCTGCAGCCCATTCATGTTCACCCCCTCCCTGACATTCCAGGAGCCAGGCCCTC---TGCTT--CGACCTTGTCAGCAACCCAGGCAGGCAACATG------GGGTCTCAATGGGTGACATGGGGA i dasNov3.JH570235 I 8536 C 0 e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5696290 32975 + 108171978 T e panPan2.chr22 41106610 9145 + 50109623 I a score=267920.000000 s hg38.chr22_GL383582v2_alt 50251 40 + 162811 TATGGGCAAGGGTAACTGACATCTGCTCAGCCTCAACGTA s panTro5.chr22 9005521 40 - 37823149 TATGGGCAAGGGTAACTGACATCTGCTCAGCCTCAACGTA i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125726 40 + 4464012 TATGGGCAAGGGTAACTGACATCTGCTCAGCCTCAACGGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622781 40 - 115148730 TATGGGCAAGGGTAACTGACATCTGCTCAGCCTCAACATA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84232805 40 + 92844088 TATGGGCAAGGCTAGCTGACATCTGCTCAACCTCAACATA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578011 40 - 96509753 TATGGGCAAGGCTAGCTGACATCTGCTCAACCTCAACATA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069723 40 - 13098629 TATGGGCAAGGCTAGCTGACATCTGCTCAACCTCAACATA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037018 40 - 4483953 TATGGGCAAGGCTAGCTGACATCTGCTTAACCTCAATATA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667062 40 + 33263144 TATGGGCAAGGCTAGCTAACATCTGCTCAACCTCAACATA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931228 40 - 14338769 TATGGGCAAGGCTAGCTGACATCTGCTTAACCTCAATATA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885304 40 + 1946073 TATGGGCAAGGCTAGCTGACATCTGCTCAACCTCAACATA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1912527 40 - 2117846 TAGGGCCAAGGCCAGCTGACACATGCTCAATCTCCACACA i calJac3.chrUn_GL286373 C 0 I 2 s saiBol1.JH378157 8829089 40 - 16357246 TAGGGGCAAGGCCAACTGACACATGCTCAATCTCCACACA i saiBol1.JH378157 C 0 I 2 s otoGar3.GL873526 36259183 37 - 42659167 TACTGAC-AGGCTG--TGACATCCTCTGAACCTCAACAAA i otoGar3.GL873526 C 0 I 2 s canFam3.chr10 46071914 31 - 69331447 ---------GGTGAGCTTCCATCTTCTGACCCTCGGCAGA i canFam3.chr10 C 0 I 5 s dasNov3.JH570235 45548 39 + 1056298 -AGAGGGAAGGGCAGCCAGGCACCTTTGAGCCTCAGTATA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5696290 32975 + 108171978 T e cebCap1.NW_016107750v1 1304736 41 - 1807191 I e panPan2.chr22 41106610 9145 + 50109623 I a score=191302.000000 s hg38.chr22_GL383582v2_alt 50291 33 + 162811 CCC--GTCT-CAAATG-----C-----GGCCAGGCGG---TGGGGTAAG s panTro5.chr22 9005561 35 - 37823149 CCCCTGTCT-CAAATG-----C-----GGCCAGGCGG---TGGGGTAAG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125766 33 + 4464012 CCC--GTCT-CAAATG-----C-----GGCCAGGCGG---TGGGGTAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622821 33 - 115148730 CCC--GTCT-CAAACG-----T-----GGCCAGGCAG---TGGGGTAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84232845 33 + 92844088 CCT--GTCT-CAAACG-----C-----GGCCAGGTGG---TGGGGTAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578051 33 - 96509753 CCT--GTCT-CAAACG-----T-----GGCCAGGTGG---TGGGGTAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069763 33 - 13098629 CCT--GTCT-CAAACG-----C-----GGCCAGGTGG---TGGGGTAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037058 33 - 4483953 CCC--GTCT-CAAACG-----C-----GGCCAGGTGG---TGGGGTAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667102 33 + 33263144 CCC--GTCT-CAAACG-----C-----GGCCAGGTGG---TGGGGTAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931268 33 - 14338769 CCC--GTCT-CAAACG-----C-----GGCCAGGTGG---TGGGGTAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885344 35 + 1946073 CCCCTGTCT-CAAATG-----C-----CGCCAGGCGG---TGGGGTAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1912569 38 - 2117846 CCT--GTCT-CAAACA-----TGGCCAGGCCAGGCGT---TGGGGTAAG i calJac3.chrUn_GL286373 I 2 C 0 s saiBol1.JH378157 8829131 38 - 16357246 CCT--GTCT-CAAACA-----CGGCCAGGCCAGGCAC---TGGGGTAAG i saiBol1.JH378157 I 2 C 0 s cebCap1.NW_016107750v1 1304777 43 - 1807191 CCT--GTCT-CAAACACGGCCCGGCCAGGCCAGGCGC---TGGGGAAAG i cebCap1.NW_016107750v1 I 41 C 0 s otoGar3.GL873526 36259222 36 - 42659167 CTT--CTCA-CAGATG-----A-----GGCCAGGTGGTCATCAGGGAAG i otoGar3.GL873526 I 2 C 0 s canFam3.chr10 46071950 22 - 69331447 TCT--GTCC-AAGATA-----G-----GG-------A---TGGAG---- i canFam3.chr10 I 5 C 0 s dasNov3.JH570235 45587 21 + 1056298 CCT--ATCTGTCAATG-----G-----AATCAC---------------- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5696290 32975 + 108171978 T e panPan2.chr22 41106610 9145 + 50109623 I a score=306682.000000 s hg38.chr22_GL383582v2_alt 50324 36 + 162811 CAGGAA--------------TGAGGCAGGGG-TGGGGTTGCCCTGAGGAGG s panTro5.chr22 9005596 36 - 37823149 CAGGAA--------------TGAGGCAGGGG-TGGGGTTGCCCTGAGGAGG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125799 36 + 4464012 CAGGAA--------------TGAGGCAGGGG-TGGGGTTGCCCTGAGGAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622854 36 - 115148730 CAGGAA--------------TGAGGCAGGGG-TGCGGTTGCCCTGAGGAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84232878 36 + 92844088 CAGGAA--------------TGAGGCAGGGG-TGGGACTGCCCTGGGGAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578084 36 - 96509753 CAGGAA--------------TGAGGCAGGGG-TGGGACTGCCCTGGGGAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069796 36 - 13098629 CAGGAA--------------TGAGGCAGGGG-TGGGACTGCCCTGGGGAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037091 36 - 4483953 CAGGAA--------------TGAGGCAGGGG-TGGGACTGCCCTGGGGAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667135 36 + 33263144 CAGGAA--------------TGAGGCAGGGG-TGGGACTGCCCTGGGGAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931301 36 - 14338769 CAGGAA--------------TGAGGCAGGGG-TGGGACTGCCCTGGGGAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885379 36 + 1946073 CAGGAA--------------TGAGGCAGGGG-TGGGACTGCCCTGGGGAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1912607 35 - 2117846 CAGGAA--------------TGAGGCAGGG--TGGGGCTGCCCTCGGGAGG i calJac3.chrUn_GL286373 C 0 I 22 s saiBol1.JH378157 8829169 37 - 16357246 CAGGAA--------------GGAGGCAGGGGTTGGGGCTGCTCTTGGGAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1304820 36 - 1807191 CAGGAA--------------GGAGGCAGGGG-TGGGGCTGCTCTTGAGAGG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36259258 35 - 42659167 CACAGA--------------TAAGGTAGGGG-TGTG-CTGTCCCAGAGAGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82777813 23 + 104043685 CAGGAT--------------TGAGACAAGGA-AGGGGG------------- i mm10.chr15 N 0 C 0 s canFam3.chr10 46071972 31 - 69331447 CAGGCT--------------GGGGTCAGGGC-TGGG-----TCTGGGGAGG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 45608 50 + 1056298 CTGGAAATGCAGTGAATACTTGAGCAGGGGG-CAGGGCTGTCCCTGGCACA i dasNov3.JH570235 C 0 I 3 e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5696290 32975 + 108171978 T e panPan2.chr22 41106610 9145 + 50109623 I a score=8842.000000 s hg38.chr22_GL383582v2_alt 50360 3 + 162811 ATG- s panTro5.chr22 9005632 3 - 37823149 ATG- i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125835 3 + 4464012 ATG- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622890 3 - 115148730 ATG- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84232914 3 + 92844088 ACG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578120 3 - 96509753 ACG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069832 3 - 13098629 ACG- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037127 3 - 4483953 ACG- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667171 3 + 33263144 ACG- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931337 3 - 14338769 ATG- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885415 3 + 1946073 ACG- i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8829206 3 - 16357246 CCG- i saiBol1.JH378157 C 0 I 8 s cebCap1.NW_016107750v1 1304856 3 - 1807191 CTG- i cebCap1.NW_016107750v1 C 0 I 21 s otoGar3.GL873526 36259293 3 - 42659167 CTG- i otoGar3.GL873526 C 0 I 9 s mm10.chr15 82777836 3 + 104043685 ATG- i mm10.chr15 C 0 C 0 s canFam3.chr10 46072003 3 - 69331447 CCG- i canFam3.chr10 C 0 I 10 s dasNov3.JH570235 45661 3 + 1056298 -AGC i dasNov3.JH570235 I 3 C 0 e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5696290 32975 + 108171978 T e calJac3.chrUn_GL286373 1912642 22 - 2117846 I e panPan2.chr22 41106610 9145 + 50109623 I a score=69922.000000 s hg38.chr22_GL383582v2_alt 50363 18 + 162811 ATCCCAACGAGG--GCGTGA s panTro5.chr22 9005635 18 - 37823149 ATCCCAACGAGG--GCGTGG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125838 18 + 4464012 ATCGCAACCAGG--GCGTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622893 18 - 115148730 ATCCCAACGAGG--GCGTGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84232917 18 + 92844088 TTCCCAACCAGG--GCCTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578123 18 - 96509753 TTCCCAACCAGG--GCCTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069835 18 - 13098629 TTCCCAACCAGG--GCCTGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037130 18 - 4483953 TTCCCAACCAGG--GCCTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667174 18 + 33263144 TTCCCAACCAGG--GCCTGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931340 18 - 14338769 TTGCCAACCAGG--GCCTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885418 18 + 1946073 TTCCCAACCAGG--GCCTGG i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8829217 13 - 16357246 ATCACAA----G--GCGTG- i saiBol1.JH378157 I 8 C 0 s otoGar3.GL873526 36259305 18 - 42659167 ATGGCAGTGAGG--GGCTGG i otoGar3.GL873526 I 9 C 0 s mm10.chr15 82777839 8 + 104043685 -----AACCTTG--A----- i mm10.chr15 C 0 C 0 s canFam3.chr10 46072016 18 - 69331447 TTCGCCACCGGC--GGCTGG i canFam3.chr10 I 10 C 0 s dasNov3.JH570235 45664 19 + 1056298 -ACGCAGACAGGCAGCGTGG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5696290 32975 + 108171978 T e cebCap1.NW_016107750v1 1304859 21 - 1807191 I e calJac3.chrUn_GL286373 1912642 22 - 2117846 I e panPan2.chr22 41106610 9145 + 50109623 I a score=819161.000000 s hg38.chr22_GL383582v2_alt 50381 88 + 162811 GCAGGG-----GAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATTAG-AGCCTCTGGCTAGGGAGCAGGCTGGGGACTAGGTACC----------CCAT s panTro5.chr22 9005653 88 - 37823149 GCAGGG-----GAC-----------------CCGAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGGTACC----------CCAT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125856 88 + 4464012 GCAGGG-----GAC-----------------CCGAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGGTACC----------CCAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622911 88 - 115148730 GCAGGG-----GAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATCAG-AGCCCCTGGCTAGGGAGCAGCCTGGAAACTAGGTACC----------CCAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84232935 88 + 92844088 GCAGGG-----GAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGGTACC----------CCAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578141 88 - 96509753 GCAGGG-----GAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGGTACC----------CCAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069853 88 - 13098629 GCAGGG-----GAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGGTACC----------CCAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037148 88 - 4483953 GCAGGG-----GAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGGTACC----------CCAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667192 88 + 33263144 GCAGGG-----GAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGGTACC----------CCAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931358 88 - 14338769 GCAGGG-----GAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGGTACC----------CCAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885436 88 + 1946073 GCAGGG-----GAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGGTACC----------CCAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1912664 88 - 2117846 GCAGGG-----GAC-----------------CCAGGTTGGAACTACCACATTGCTTTATTGCACACCAG-GGCCCCTGGCTAGGGAGCAGGCTGAGGACTAGGTACC----------CTGT i calJac3.chrUn_GL286373 I 22 C 0 s saiBol1.JH378157 8829230 88 - 16357246 GCAGGT-----GAC-----------------CCAGGTTGAAACTACCACATTGCTTTATTGCACATCAG-GGCTCCTGGCTAGGGAGCAGGCTGAGGACTAGGTACC----------CTAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1304880 88 - 1807191 GCAGGG-----GAC-----------------CCAGGTTGGAACTACTACATTGCTTTATTGCACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGAGGACTAGCTACC----------CTAT i cebCap1.NW_016107750v1 I 21 C 0 s otoGar3.GL873526 36259323 87 - 42659167 -TCAGG-----GGT-----------------CCAGGTTGGGGTAAGCACATTGGTTTATTGCACGTCAG-GGTCCCTGGCTGGGGAACAGTTTGCAGACTTGGTGTC----------CCTG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82777847 82 + 104043685 ----GT-----TAT-----------------CTGAGTTGCAGACACAGGACTCATTTATTGGACATCAATAAACCCAAACTGGGGAAAAGACTG-GAACCACTGACC----------CT-- i mm10.chr15 C 0 C 0 s canFam3.chr10 46072034 112 - 69331447 TCAGGG-----GGCCCTGAGGGACTCGGAAGCCAGGATGGAGCCACCAAACTGGTTTATTGTACCTC---GGCCCCT-GCTGAGGAgccggggggggggggggggccggTGGTAATTCCTT i canFam3.chr10 C 0 I 2 s dasNov3.JH570235 45683 81 + 1056298 GTAGGGACGAAGAG-----------------CCAGATGGGAGCCACCG-ACAGCTTTATTGAGGCTCAG-GGTCCC--GCGTGGGAGT------GGGATCAGCCCCT----------C--- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5696290 32975 + 108171978 T e panPan2.chr22 41106610 9145 + 50109623 I a score=623454.000000 s hg38.chr22_GL383582v2_alt 50469 55 + 162811 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGATGGGGTCACCAGAA--AGCTGAC s panTro5.chr22 9005741 55 - 37823149 TCTAGCGGGGCACAGCACAAAGCTCATAGGGGGATGGGGTCACCAGGA--AAGCAAA i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125944 55 + 4464012 TCTAGCGGGGCACAGCACAAAGCTCATAGGGGGATGGGGTCACCAGGA--AAGCAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106622999 55 - 115148730 TCTAGCGGGGCACAGCACAAAGCTCATAGGGGGATGGGGTCACCAGAA--AGCTGAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233023 55 + 92844088 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGAAGGGGTCACCAGGA--AAGCAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578229 55 - 96509753 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGAAGGGGTCACCAGGA--AAGCAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069941 55 - 13098629 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGAAGGGGTCACCAGGA--AAGCAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037236 55 - 4483953 TCTAGCGGGGCACAGCACAAAGCTCATAGGGGGATGGGGTCACCAGGA--AAGCAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667280 55 + 33263144 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGATGGGGTCACCAGGA--AAGCAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931446 55 - 14338769 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGATGGGGTCACCAGGA--AAGCAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885524 55 + 1946073 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGATGGGGTCACCAGGA--AAGCAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1912752 55 - 2117846 TCTAGCGGGGCACAGCACAAAGCTCATAAGGGGAAGGGGTCACCAGGA--AAGCAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8829318 55 - 16357246 TCTAGCGGGGCACAGCACAAAGCTCATAAGGGGAAGGGGTCACCAGGA--AAGCAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1304968 55 - 1807191 TCTAGCGGGGCACAGCACAAAGCTCATAAGGGGAAGGGGTCACCAGGA--AAGCAAA i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5663315 54 + 108171978 TCTAGCGGGGCACAGCACAAAGCTGGTATGGGCAGGGGGTAACCAGGA--AGTGAC- i micMur3.chr7 T 32975 I 1671 s otoGar3.GL873526 36259410 54 - 42659167 TCTAGCGGGGCACAGCACAAAGCTGGTAAGGGACAGGGCTAACCAGGA--AGGCAA- i otoGar3.GL873526 C 0 I 1 s mm10.chr15 82777929 55 + 104043685 TCTAGCGAACCACTGCACAGAGCTGGTAGGGTGCTGGACTAACTAAAATTGAGTA-- i mm10.chr15 C 0 C 0 s canFam3.chr10 46072148 55 - 69331447 CCTAGGGAGGGTCCCCCCAAAACTGGAAAGGGGCTGGAACCTTTCGGA--AGGGGAA i canFam3.chr10 I 2 C 0 s dasNov3.JH570235 45764 55 + 1056298 TCTAGCGGGGCATGGCACAGAGCTGGTAGGGAGTCGGGGTCACCAGGA--AGGCGTA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e panPan2.chr22 41106610 9145 + 50109623 I a score=93990.000000 s hg38.chr22_GL383582v2_alt 50524 12 + 162811 GACACGAGAGTG s panTro5.chr22 9005796 12 - 37823149 GACACCATGGTG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3125999 12 + 4464012 GACACCATGGTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623054 12 - 115148730 GACACGAGAGTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233078 12 + 92844088 GACACCATGGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578284 12 - 96509753 GACACCATGGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7069996 12 - 13098629 GACACCATGGTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037291 12 - 4483953 GACACCATGGTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667335 12 + 33263144 GACACCATGGTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931501 12 - 14338769 GACACCCTGGTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885579 12 + 1946073 GACACCATGGTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1912807 12 - 2117846 GACACCGTGAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8829373 12 - 16357246 GACACCATGAGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1305023 12 - 1807191 GACACCATGAGT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36259465 12 - 42659167 GACACCATGGTC i otoGar3.GL873526 I 1 C 0 s mm10.chr15 82777984 12 + 104043685 GATGCCATAATC i mm10.chr15 C 0 C 0 s canFam3.chr10 46072203 12 - 69331447 AACCCCCTGGTC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 45819 12 + 1056298 GTTGCCGTGGGT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5663369 1671 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=3630351.000000 s hg38.chr22_GL383582v2_alt 50536 293 + 162811 GCTGGGCCGGGGCTGTCCGGCGGCCACGGAGAAGCTGAAGTGCTGCAGCAGGGAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGT-----GGGGAGG-GGAGGGG--CGTCAGTGAGCCTGGCT-CCTGGGTGATAC----CCCTGCAAGACTCCACGGAAGGGGACAGGGAGCCGGGCTCCCCACAGGC----ACCTGCTGAGAAAGGCAGGAAGGCCTCCGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG s panTro5.chr22 9005808 293 - 37823149 GCTGGGCCGGGGCTGTCCGGTGGGCACCGAGAAGCTGAAGTGCTGCAGCAGGGAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGGAGG-GGAGGGG--CGTCAGTGAGCCTGGCT-CCTGGGTGATAC----CTGTGCAAGACTCCACGGAAGGGGACAGGGAGCCGGGCTCCCCACAGGC----ACCTGCTGAGAAAGGCAGGAAGGCCTCCGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTCGGGGTGGAAGTGGAAGGG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3126011 298 + 4464012 GCTGGGCCGGGGCTGTCCGGTGGGCACCAAGAAGCTGAAGTGCTGCAGCAGGGAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGTGGGGAGGGGAGG-GGAGGGG--CGTCAGTGAGCCTGGCT-CCTGGGTGATAC----CCCTGCAAGACTCCACGGACGGGGACAGGGAGCCGGGCTCCCCACAGGC----ACCTGCTGAGAAAGGCAGGAAGGCCTCCGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623066 293 - 115148730 GCTGGGCCGGGGCTGTCCGGCGGGCACTGAGAAGCTGAAGCCTTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGA-----GGGGAGG-GGAGGGG--CGTCAGTGAGCCTGGCT-CCCAGGCGATAC----CCCTGCAAGACTCCACGGAAGGGGACAGGGAGCTGGGCTCCCCACAGGC----ACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233090 298 + 92844088 GCTAGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCCCGGCGGCCTGTGGGGAGGGGAGG-GGAGGGG--TGTCAGTGAGCCTGCCT-CCCGGGCAGGAC----CCCTGCAAGATTCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGC----ACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578296 298 - 96509753 GCTGGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGTGGGGAGGGGAGG-GGAGGGG--TGTCAGTGAGCCTGCCT-CCCGGGCAGGAC----CCCTGCAAGATTCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGC----ACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070008 298 - 13098629 GCTGGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAACGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGTGGGGAGGGGAGG-GGAGGGG--TGTCAGTGAGCCTGCCT-CCCGGGCAGGAC----CCCTGCAAGATTCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGC----ACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037303 298 - 4483953 GCTGGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGTGGGGAGGGGAGG-GGAGGGG--TGTCAGTGAGCCTGCCT-CCCAGGCAGGAC----CCCTGCAAGATTCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGC----ACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGAAAGTGTTCGGGGTGGAAGCGGAAGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667347 293 + 33263144 GCTGGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGT-----GGGGAGG-GGAGGGG--TGTCAGTGAGCCTGCCT-CCCGGGCAGGAC----CCCTGCAAGATTCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGC----ACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931513 293 - 14338769 GCTGGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGT-----GGGGAGG-GGAGGGG--TGTCAGTGAGCCTGCCT-CCCGGGCAGGAC----CCCTGCAAGATTCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGC----ACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885591 293 + 1946073 GCTGGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGT-----GGGGAGG-GGAGGGG--TGTCAGTGAGCCTGGCT-CCCGGGCAGGAC----CCCTGCAAGATTCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGC----ACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1912819 292 - 2117846 GCTGGGCCGGGGCTGTCCAGCGGGCACAGAGAAGCTGAAGCGCTGTAGCAGGCAGGTGAAGAACAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGTAGG-GGAGGGG--CCTCAGTGAGCATGGGT-CCTGGGCGATAC----CCCTGCAAGACTCCATGGAAGGG-ACAGGGAGCCAGGCACCCCACAGGC----ACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGCGGCCCTGGGCATCCAGGAAGTGTTCAGGGTGGAAGCGGAAGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8829385 292 - 16357246 GCTGGGCCGGGGCTGTCCGGCGGGCACGGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGT-----GGGTAGG-GGAGGGG--CCTCAGTGAGCCTGGGTCCCTGGGCGATAC----CCCTGCAAGACTCCACAGAAGGG--CTGGGAGCAGGGCACCCCACAGGT----ACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGCGGCCCTGGGCATCCAGGAAGTGTTCAGGGTGGAAGCGGAAGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1305035 291 - 1807191 GCTGGGCCGGGGCTGTCCGGCGGGCACAGAGAAGCTGAAGTGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGTAGG-GGAGGGG--CCTCAGTGAGCATGGGT-CCTGGGCGATAC----CCCTGCAAGACTCCACAGAAGGG--CAGGGAGCCGGGCACCCCATAGGC----ACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTCAGGGTGGAAGCGGAAGGG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5665040 294 + 108171978 GCTGGGCCGGGGGTGTCCTGGAGGCACCGAGAAGCTGAAGCGCTGCAGGAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCACGCCCGGCGGCCTGT-----GTGTGGGCAAGGGGG--GATCAGTGAGCCTGGGT-CCTGGGCTCCAC----CCTCCCAAGACTCCCAGGAAGGGGGCAGGGGGTGGGGCAGCCCACAGGC----ACCTGCTGAGAAGGGCATGAAGGCCTCGGGCTTCACAAAGCGGCCCTGAGAGTCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG i micMur3.chr7 I 1671 C 0 s otoGar3.GL873526 36259477 290 - 42659167 GCTGGGCGGGGAGTGTTCGGGAGGCACCGAGAAGCTAAAGCGCTGCAGGAGGCAAGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGCGGCTCCCCCAGGCATGCACGGCGGCCTGT-----GGGTGGG--AAGGGG--GCTCAGTGAGCCTGGGC-CCTGGGCTCTGC----CTCTCTAGG--TGCATGGGAGGGGACAAGGAGCTAGGCAGCCCCCAGGC----ACCTGCAGAGAAAGGCATGAAGGCCTCTGGCTTCATGAAGCGACCCTGGGCGTCCAGGAAGTGCTCAGGGTGGAAGCGGAAGGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82777996 295 + 104043685 ACTGGGCTGGGGCTGTCCATCCGGTACTGAGAAGCTAAAGCGCTGCAGGAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGACTCCCCCAGGCATGATCTGCGGCCTGT-----GGGTGGG-ATAGGG----CTCAGTCTGACTGGGA-ACTGATTGGTGCTCCACCCTCCAAAGATTTCTAGGGATAGATAGGCAGACAAGCACCCCAGAGAT----ACCTGCTGAGAATGGCATGAAGGCCTCAGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTCAGGATGGAAGCGGAGGGG i mm10.chr15 C 0 C 0 s canFam3.chr10 46072215 289 - 69331447 CCTGGGCCCGGGCTTCCCCCCAGGGCCTGAAAAACTTAAACCCTTCCGGAGGGAGGGGAAAAAAAAGAAAAACTCCCTGCGGGCCAGGGGCTCCCCCAAGGAAAACCGGCGGCCTTC-----GGGTGGG-GAAAGAA-CCCCCAAAAAACCCGGGG-CCTGGGCCCAAC----CTC--CAAAAATCCCTCTGAAGGGGTGGGAAACCGGGGACCCCCC---C----ACCTTCAAAAAAAGGCATTAAGGCCCTATGCTTGAAAAAAAGGCCCTGGGGGTCCCAGAAATGCTCCGGGTAAAAACGGAAAGG i canFam3.chr10 C 0 M 283 s dasNov3.JH570235 45831 287 + 1056298 GCTGGGCGGGGGCTGCCCCGCGGGCACCGAGAAGCTGAAGCGTTGCAGGAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGTGGG-TGCGGGGGCACTCAGTGAGGCTTACC-CGCCCCAGACAC----CCTTG-----------GGAACAGGGCAGGG-GCCTGGCACCCCACGGGCACCTACCTGCTGAGAAAGGCAGGAAGGCTTCCTGCTTCACGAAGCGGCCCTGGGCGTCCAGGAAGTGTTCCGGGTGGAAGCGACGGGG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e panPan2.chr22 41106610 9145 + 50109623 I a score=926563.000000 s hg38.chr22_GL383582v2_alt 50829 75 + 162811 CTTCTTCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGATGAGTGTCGTTCCCTGGGCAGGAGATGC s panTro5.chr22 9006101 75 - 37823149 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGATGAGTGTCGTTCCCTGGGCAGGAGATGC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3126309 75 + 4464012 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGATGAGTGTCGTGCCCTGGGCAGGAGATGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623359 75 - 115148730 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGTGTCGTCCCCTGGGCAGGAGATGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233388 75 + 92844088 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGCAGGAGATGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578594 75 - 96509753 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGCAGGAGATGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070306 75 - 13098629 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGCAGGAGATGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037601 75 - 4483953 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGAAGGAGATGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667640 75 + 33263144 TTTCTCCCAGACGGCCTCATCCTTCAGCACCGTTGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGCAGGAGATGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931806 75 - 14338769 CTTCTCCCAGACGGCCTCATCCTTCAGCACTGATGACAGGTTGGTGAAGAGCGTTGTCCCCTGGGAAGGAGATGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885884 75 + 1946073 CTTCTCCCAGACAGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGTGTCGTCCCCTGGGCAGGAGATGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913111 75 - 2117846 CTTCTCCCAGTTGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTTGTCCCCTGGGCAGGAGATGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8829677 75 - 16357246 CTTCTCCCAGTTGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTTGTTCCCTGGGCAGGAGATGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1305326 75 - 1807191 CTTTTCCCAGATGGCCTCATCCTTCAGCACTGATGACAGGCTGGCGAAGATCGCTGTCCCCTGAGTAGGAGAGGC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5665334 75 + 108171978 CTTCTCCCAGACCGCCTCGTCCTTCAGCACTGATGACAGGTTGGTGAAGAGTGTTGTCCCCTGGGAAAGAGATGC i micMur3.chr7 C 0 I 373 s otoGar3.GL873526 36259767 75 - 42659167 CTTCTCCCAGACTGTCTCGTCCTTCAGAACTGATGACAGGTTGGTGAGGAGAAGTGTCCCCTGGGCAGGAGACAC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82778291 74 + 104043685 CTTCTCCCAGACAGTCTCATCCTTCAGCACAGAGGACAGGTTGGGGATGAGGGTCGTCCCCTG-GCAGGAGGTAC i mm10.chr15 C 0 C 0 s dasNov3.JH570235 46118 75 + 1056298 CTTCTCCCAGACGGTCTCGTCCTTCAGCACCGACGACAGGTTGAGGATGAGTGTCGTCCCCTGCACAGGAGATGC i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46072504 283 - 69331447 M e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e panPan2.chr22 41106610 9145 + 50109623 I a score=260536.000000 s hg38.chr22_GL383582v2_alt 50904 33 + 162811 AGGGTGAGAGTGGGGACTGGACTCTAGGATGCT s panTro5.chr22 9006176 33 - 37823149 AGGGTGAGAGTGGGGACTGGGCTCTAGGATGCT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3126384 33 + 4464012 AGGGTGAGAGTGGGGACTGGGCTCTAGGATGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623434 33 - 115148730 AGGGCGAGAGTGGGGACTGGGCTCTAGGATGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233463 33 + 92844088 AGAGTGAGAGCGGGGACTGGGCTCTAGGATGGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578669 33 - 96509753 AGAGTGAGAGTGGGGACTGGGCTCTAGGATGGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070381 33 - 13098629 AGGGTGAGAGTGGGGACTGGGCTCTAAGATGTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037676 33 - 4483953 AGGGTGAGAGTGGGGACTGGGCTCTAGGATGGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667715 33 + 33263144 ATGGTGAGAGTGGGGACGGGGCTCTAAGATGTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931881 33 - 14338769 AGGGTGAGAGTGGGGACTGGGCTCTAAGATGTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885959 31 + 1946073 AGGGT--GAGTGGGGACTGGGCTCTAAGATGTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913186 33 - 2117846 AGGGTGGCAGTGGGGACTGGGCTCTACGATGCT i calJac3.chrUn_GL286373 C 0 I 17008 s saiBol1.JH378157 8829752 33 - 16357246 AGGTTGGCAGTGGGGACTGGGCTCTAGGATGCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1305401 33 - 1807191 AGGGTGAGAGTAAGGACTGGGCTCTAGGATGCT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36259842 33 - 42659167 CTAGTGTGAGTGGTGACTAGGCTTCAGGATGCT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82778365 28 + 104043685 ATGGTGTGAATATGGACAGGGT-----GAGGCT i mm10.chr15 C 0 I 3 s dasNov3.JH570235 46193 31 + 1056298 CAGGT--GTGTGGAtgttggaaactgaggcaca i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46072504 283 - 69331447 M e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5665409 373 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=78153.000000 s hg38.chr22_GL383582v2_alt 50937 9 + 162811 GGGACCCCT s panTro5.chr22 9006209 9 - 37823149 AGGACCCCT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3126417 9 + 4464012 GGGACTCCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623467 9 - 115148730 GGGACCCCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233496 9 + 92844088 GGGACCCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578702 9 - 96509753 GGGACCCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070414 9 - 13098629 GGTACCCCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037709 9 - 4483953 GGGACCCCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667748 9 + 33263144 GGGACCCCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931914 9 - 14338769 GGTACCCCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885990 9 + 1946073 GGTACCCCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930227 9 - 2117846 GGGACCCCT i calJac3.chrUn_GL286373 I 17008 C 0 s saiBol1.JH378157 8829785 9 - 16357246 GGGACCCCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1305434 9 - 1807191 GGGACCCCT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36259875 9 - 42659167 GGGACAGTT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82778396 9 + 104043685 TAGACTCTA i mm10.chr15 I 3 C 0 s dasNov3.JH570235 46224 9 + 1056298 gtggcctct i dasNov3.JH570235 C 0 I 505 e canFam3.chr10 46072504 283 - 69331447 M e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5665409 373 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=314874.000000 s hg38.chr22_GL383582v2_alt 50946 38 + 162811 GCCAC----CAAACACACGGGGGACACACACTGCCTGGCACA s panTro5.chr22 9006218 38 - 37823149 GCCAC----CAAACACATGGGGGACACACACTGCCTGGCACA i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3126426 42 + 4464012 GCCACCAAACAAACACACGGGGGACACACACTGCCTGGCACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623476 38 - 115148730 GCCAC----CAAACACACGGGGGACATACACTGCCTGGCACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233505 38 + 92844088 GCCAC----CAAACGCACGGGGGACACACACTGCCTGGCACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578711 38 - 96509753 GCCAC----CAAACGCACGGGGGACACACACTGCCTGGCACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070423 38 - 13098629 GCCAC----CAAACACACGGGGGACACACACTACCTGGCACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037718 38 - 4483953 GCCAC----CAAACGCACGGGAGACACATACTGCCTGGCACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667757 36 + 33263144 GCCAC----CAAACACACGGGGG--ACACACTACCTGGCACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931923 38 - 14338769 GCCAC----CAAACACACAGGGGACACACACTACCTGGCACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 885999 38 + 1946073 GCCAC----CAAACACACGGGGGACACACACTACCTGGCACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930236 38 - 2117846 GCCAC----CAAACACATGGGGGATACACATTGCCCGGCACA i calJac3.chrUn_GL286373 C 0 T 17055 s saiBol1.JH378157 8829794 34 - 16357246 GCCAC----CAAACA----GGGGACACACACTGCCTGGCACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1305443 38 - 1807191 GCCAC----TAAACACATGGGGGACACACACTGCCTGGCACA i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36259884 37 - 42659167 GCCAC----CAAACACAC-AGGCACACATTCTGACTGGCACA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82778405 33 + 104043685 GTCAC----CAAGTTCAT-AGGTACAGGCTCTAC----CACA i mm10.chr15 C 0 C 0 e dasNov3.JH570235 46233 505 + 1056298 I e canFam3.chr10 46072504 283 - 69331447 M e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5665409 373 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=52537.000000 s hg38.chr22_GL383582v2_alt 50984 16 + 162811 CA-GCTGGACTCTGTCA s panTro5.chr22 9006256 16 - 37823149 CA-GCTGGACTCTGTCA i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3126468 16 + 4464012 CA-GCTGGACTCTGTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623514 16 - 115148730 CA-GCTGGACTCTGTCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233543 14 + 92844088 CA-GCTGGACTC--TCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578749 14 - 96509753 CA-GCTGGACTC--TCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070461 14 - 13098629 CA-GCTGGACTC--TCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037756 16 - 4483953 CA-GCTGGACTCTGTCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667793 14 + 33263144 CA-GCTGGACTC--TCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931961 14 - 14338769 CA-GCTGGACTC--TCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886037 14 + 1946073 CA-GCTGGACTC--TCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913219 5 - 2117846 CA-ACT----------- i calJac3.chrUn_GL286373 T 17055 C 0 s saiBol1.JH378157 8829828 7 - 16357246 CA-GCTGG--------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1305481 12 - 1807191 CA-GCTGGACTC--T-- i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36259921 16 - 42659167 CA-CATGGATGCTTAAA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82778438 17 + 104043685 CACTCTAGATGCTTTCA i mm10.chr15 C 0 I 63 e dasNov3.JH570235 46233 505 + 1056298 I e canFam3.chr10 46072504 283 - 69331447 M e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5665409 373 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=74406.000000 s hg38.chr22_GL383582v2_alt 51000 12 + 162811 ACTAGTCCTGCG s panTro5.chr22 9006272 12 - 37823149 ACTAGTCCTGCG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3126484 12 + 4464012 ACTAGTCCTGCG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623530 12 - 115148730 ACTAGTCCTGTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233557 12 + 92844088 ACTAGTCCTGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578763 12 - 96509753 ACTAGTCCTGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070475 12 - 13098629 ACTAGTCCTGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037772 12 - 4483953 ACTAGTCCAGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667807 12 + 33263144 ACTAGTCCTGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931975 12 - 14338769 ACTAGTCCTGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886051 12 + 1946073 ACTAGTCCTGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913224 11 - 2117846 -CTAGTTCTTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8829835 12 - 16357246 ACTGCTAGTTCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1305493 12 - 1807191 ACTAGTCCTGCG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36259937 12 - 42659167 AGTAACGCTCAG i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82778455 63 + 104043685 I e dasNov3.JH570235 46233 505 + 1056298 I e canFam3.chr10 46072504 283 - 69331447 M e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5665409 373 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=436757.000000 s hg38.chr22_GL383582v2_alt 51012 56 + 162811 C----CCGAGAAGCTCCACAGTACCCTCTCCGACCCCACAGCAGGGCGCAGTCACACCTC s panTro5.chr22 9006284 56 - 37823149 C----CCGAGAAGCTCCACAGTACCCTCTCCGACCCCACAGCAGGGCGCAGTCACACATC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3126496 56 + 4464012 C----CCGAGAAGCTCCACAGTACCCTCTCCGACCCCACAGCAGGGTGCAGTCACACCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623542 56 - 115148730 G----CCAAGAAGctcctgagctccctctctgaccctatggtggggagcagtcacacctc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233569 56 + 92844088 C----CTGAGAAGCTCCTGGGCACCCTCTCTGACCCCATGGCAGGGCGCAGTCACACCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578775 56 - 96509753 C----CTGAGAAGCTCCTGGGCACCCTCTCTGACCCCATGGCAGGGCGCAGTCACACCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070487 56 - 13098629 C----CTGAGAAGCTCCTGGGCACCCTCTCTGACCCCATGGCAGGGCGCAGTCACACCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037784 56 - 4483953 C----CCAAGAAGCTCCTGAGCACCCTCTCTGACCCCATGGCAGGGCGCAGTCACACCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667819 56 + 33263144 C----CTGAGAAGCTCCTGGGCACCCTCTCTGACCCCATGGCAGGGCGCAGTCACACCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13931987 60 - 14338769 CCTAACTAAGAAGCTCCTGAGCACCCTCTCTGACCCCATGGCAGGGCGCAGTCACACCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886063 52 + 1946073 C----CTGAGAAGCTCCTGGGCACCCTCTCTGACCCCATGGCAGGG----GTCACACCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913235 56 - 2117846 T----CTAAGAAGCTCCTGGGCACCCACTCTGACCCCATAGCAGGTCCCAGTCACATCTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8829847 56 - 16357246 C----CTAAGAAGCTCCTGGGCACCCACTCTGACCCCATAGCAGGTCTCCGTCATATCTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1305505 56 - 1807191 C----CTGAGAAGCTCCTGGGCAGCCTCTCCAACCCTATAATAGGCCCCAGTCACACCTC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36259949 53 - 42659167 T----CCAAGAAGCTTCTTGGCACCCTCT--GACACC-TAGTATAGCTGAGTCTCGCCTC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46072787 56 - 69331447 C----CCCAGAAGCTCCTGGGCACCCTCTCTGTCCCCATGGCAGGGCTAAGGGACTCCCC i canFam3.chr10 M 283 I 2 e mm10.chr15 82778455 63 + 104043685 I e dasNov3.JH570235 46233 505 + 1056298 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5665409 373 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=172960.000000 s hg38.chr22_GL383582v2_alt 51068 24 + 162811 TCAGAGGCACCCACACTG-CCCCCT s panTro5.chr22 9006340 24 - 37823149 TCAGAGGCACCCACACTG-CCCCCT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3126552 25 + 4464012 TCAGAGGCACCCACACTGCCCCCCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623598 24 - 115148730 ccgggggcacctaagctg-ccccct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233625 24 + 92844088 TCAGGGGCACCCACGCTG-CCCCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578831 24 - 96509753 TCAGGGGCACCCACGCTG-CCCCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070543 24 - 13098629 TCAGGGGCACCCATGCTG-CCCCCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037840 24 - 4483953 TCAGGGGCACCCACGCTG-CTCCCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667875 23 + 33263144 TC-GGGGCACCCACGCTG-CTCCCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932047 24 - 14338769 TCAGGAGCACCCACGCTG-CTCCCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886115 24 + 1946073 TCAGAGGCACCCACGCTG-CTCCCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913291 24 - 2117846 CTGGGGGTGCCCACACTG-CCCCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8829903 24 - 16357246 CTGGGGGTGCCCATGCTG-CCCCCT i saiBol1.JH378157 C 0 I 15498 s cebCap1.NW_016107750v1 1305561 24 - 1807191 TTAGGGGCGCCCACGCTG-CCCCCT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36260002 23 - 42659167 CTATTAGTGCCTTCCAGG-CCCCT- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82778518 24 + 104043685 TGAGAGATGTCCACACTA-TCACAT i mm10.chr15 I 63 C 0 s canFam3.chr10 46072845 24 - 69331447 CCACGGGCGCCCACACGG-CCACCC i canFam3.chr10 I 2 C 0 e dasNov3.JH570235 46233 505 + 1056298 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5665409 373 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=345607.000000 s hg38.chr22_GL383582v2_alt 51092 50 + 162811 CTCCCTGCAGGCGCTGGGTCCTCCAAC--ATTCT--GGCAGGTCCTGATTTGTC s panTro5.chr22 9006364 50 - 37823149 CTCCCTGCAGGCGTTGGGTCCTCCAAC--ATTCT--GGCAGGTCCTGATTTGTC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3126577 50 + 4464012 CTCCCTACAGGCATTGGGTCCTCCAAC--ATTCT--GGCAGGTCCTGGTTTGTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623622 40 - 115148730 ttctctacaggca----------caac--tttct--ggcagatcctggtctgtc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233649 50 + 92844088 CTCCCTACAGGCATTGGGTCGTCCGAC--ATTCT--GGCAGGTCCTGATCGACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578855 50 - 96509753 CTCCCTACAGGCATTGGGTCGTCCGAC--ATTCT--GGCAGGTCCTGATCGACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070567 50 - 13098629 CTCCCTACAGGCATTGGGTCGTCCGAC--ATTCT--GGCAGGTCCTGATCGACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037864 50 - 4483953 CTCCCTACAGGCATTGGGCCATCCGAC--ATTCT--GGCAGGTCCTGATCTGTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667898 50 + 33263144 CTCCCTACAGGCATTGGGTCGTCCAAC--ATTCT--GGCAGGTCCTGATCTGTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932071 50 - 14338769 CTCCCTACAGGCATTGGGCCGTCCGAC--ATTCT--GGCAGGTCCTGAtctgtc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886139 50 + 1946073 CTTCCTACAGGCATTGGGTCGTCGGAC--ATTCT--GGCAGGTCCTGATCTGTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913315 50 - 2117846 CTCCCTACAGGTGTGGGGTCCTCCAAC--ATTTT--GGCAGGGCCTGGTCTGTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845425 50 - 16357246 CTCCCTAGGAGCATTGGGTCCCCCGAC--ATTCT--GGCAGGTCCTGGTCTGTC i saiBol1.JH378157 I 15498 T 15548 s cebCap1.NW_016107750v1 1305585 50 - 1807191 CTCCCTAGGAGCGTTGGGTCCCCCAAC--ATTCT--GGCAGGTCCTGGTCTGTA i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36260025 51 - 42659167 ATTCCTGCAGGCA-TGGATCTTCAAAA--ACTCTGGGGCAGTTTCTAGTTTGTC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82778542 52 + 104043685 GTATTTGTAGGTAGTGGCTGTTATAACCACTCCT--GCCATATTTTACCTTGCT i mm10.chr15 C 0 C 0 s canFam3.chr10 46072869 50 - 69331447 GTCCCTGT--GCACAGGCTCCTCCAGC--ATGCTGTGGCACATTTCAGCCTGTC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 46233 505 + 1056298 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5665409 373 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=57066.000000 s hg38.chr22_GL383582v2_alt 51142 12 + 162811 T------TCCCCACTAGA s panTro5.chr22 9006414 12 - 37823149 T------TCCCCGCTAGA i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3126627 12 + 4464012 T------TCCCCACTAGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623662 12 - 115148730 t------tccccattaga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233699 18 + 92844088 GATCAGAACCCCACTAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578905 18 - 96509753 GATCAGAACCCCACTAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070617 18 - 13098629 GATCAGAACCCCACTAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037914 12 - 4483953 T------ACCCCACTAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667948 12 + 33263144 T------ACCCCACTAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932121 12 - 14338769 t------accccactaga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886189 12 + 1946073 T------ACCCCACTAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913365 12 - 2117846 T------TCCCCACTAGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8829927 12 - 16357246 T------TCCCCACTGGA i saiBol1.JH378157 T 15548 C 0 s cebCap1.NW_016107750v1 1305635 12 - 1807191 T------TCGCCACTAGA i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36260076 11 - 42659167 -------ATCCCTGAAGA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82778594 10 + 104043685 --------TGCTTTTATA i mm10.chr15 C 0 I 1 s canFam3.chr10 46072919 12 - 69331447 T------TCCCCAGCGGC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 46233 505 + 1056298 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5665409 373 + 108171978 I e panPan2.chr22 41106610 9145 + 50109623 I a score=840032.000000 s hg38.chr22_GL383582v2_alt 51154 113 + 162811 CTG-G-GGCTCTGGATGGACA--------G--GCCAGCCCTGCCTATACTCTGGACCCCCCATCCAAGCGGGGACAGTCAGTG-TGGTGGCATTGA-GGACTAGGT------GGCCAGGGTTCCTAGAGTGGG s panTro5.chr22 9006426 113 - 37823149 CGG-G-GGCTCTGGATGGACA--------G--GCCAGCCCTGCCTATACTCTGGACCCCTCACCCAAGCAGGGACAGTCAGTG-TGGTGGCATTGA-GGACTAGGT------GGCCAGGGTTCCTAGAGTGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115755 113 + 50109623 CGG-G-GGCTCTGGATGGACA--------G--GCCAGCCCTGCCTATACTCTGGACCCCTCACCCAAGCGGGGACAGTCAGTG-TGGTGGCATTGA-GGACTAGGT------GGCCAGGGTTCCTAGAGTGGG i panPan2.chr22 I 9145 C 0 s gorGor5.CYUI01015375v1 3126639 112 + 4464012 CGG-G-GGCTCTGGATGGACA--------G--GCCAGTCCTGCCTCTATTCTGGACCCCACA-CCAGGCGGGGACAGTCGATG-TGGTGGCATTAA-GGACCGGGT------GGCCAGGGTTCCTAGACTGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623674 113 - 115148730 ctg-g-ggctctggatggaca--------g--gccagtcctgcctctattcTGGACCCCACACTCAATCTGGGACAGTCGATG-TGGTGGCATTGA-GGACTGGGT------GGCCAGTGTTCCTAGACTGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233717 114 + 92844088 CTG-G-GGTTCTGTATGGACA--------G--GCCAGCCCTGCCTCTACTCTGGACCCCACAACCAAGCTGGGACAGTTGATG-TGATGGCATTAAGGGACTGGGT------GGCCAGGGTTCCTAGACTGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87578923 114 - 96509753 CTG-G-GGTTCTGTATGGACA--------G--GCCAGCCCTGCCTCTACTCTGGACCCCACAACCAAGCTGGGACAGTTGATG-TGATGGCATTAAGGGACTGGGT------GGCCAGGGTTCCTAGACTGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070635 114 - 13098629 CTG-G-GGTTCTGTATGGACA--------G--GCCAGCCCTGCCTCTACTCTGGACCCCACAACCAAGCTGGGACAGTTGATG-TGATGGCATTAGGGGACTGGGT------GGCCAGGGTTCCTAGACTGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4037926 113 - 4483953 CTG-G-GGTTCTGTATGGACA--------G--GCTAGCCCTGCCTCTACTCTGGACCCCACAACCAAGCTGGGACAGTTGATG-TGATGGCATTGA-GGACTGGGT------GGCCAGGGTTCCTAGACTGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24667960 114 + 33263144 CTG-G-GGTTCTGTATGGACA--------G--GCCAGCCCTGCCTCTACTCTGGACCCCACAACCAAGCTGGGACAGTTGATG-TGATGGCATTGAGGGACTGGGT------GGCCAGGGTTCCTAGACTGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932133 113 - 14338769 ctg-g-ggttctgtatggaca--------g--gCTAGCCCTGCCTCTACTCTGGACCCCACAACCAAGCTGGGACAGTTGATG-TGATGGCATTGA-GGACTGGGT------GGCCAGGGTTCCTAGATTGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886201 114 + 1946073 CTG-G-GGTTCTGTATGGACA--------G--GCCAGCCCTGCCTCTACTCTGGACCCCACAGCCAAGCTGAGACAGTTGATG-TGATGGCACTGAGGGACTGGGT------GGCCAGGGTTCCTAGACTGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913377 97 - 2117846 --C-A-GGCTCTTGATGGACA--------G--GATAGCTCTGACTCTGCTGGAGACCCC--------------ACAATCAGTG-TGGTGGCTTTGA-GGTTCGGGA------GGCCAGGGGTCCCAGACTGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8829939 97 - 16357246 --C-A-GGCTCTTGATGGACA--------G--GATAGCTCTGACTCTGCTGTATACCCC--------------ACAATCAGTG-TGGTGGCTTTGA-GGTTTGGAT------GGGCAGGGTTCCCAGACTGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1305647 111 - 1807191 --CTG-GGCTCTGGATGGACA--------G--GCCGGCCCTGACTCTGCTCTGTACCCCACACACAGGCTG-GACAGTTAGTG-TGGTGGCATTAA-GGACTGGCA------GACCAGGGTTCCCAGACTGGG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36260087 112 - 42659167 CCA-G-GGCGCCCCACGGACA--------G--GGCAGCTGTGCTTCTGCTCTG--CTCCACACCCAGGCTGGGGCAATCAGTGCCTGTGGAATGGA-GGACTGGAT------GGCCTGGGTTCCCAGCCTGGC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82778605 116 + 104043685 CTG-G-GGATTCTAAAGTACA--------GTTGTTGGTCTTGATTCTATTCAG------ATACTTACCCAGAGAAAGTTGGTACCAATTAAGTTTA-GAATTGGATTTCCAAATCCAGTCCTCTTTAACTGGG i mm10.chr15 I 1 C 0 s canFam3.chr10 46072931 81 - 69331447 CTG-GCAGCTCTGAAGGGACAAGGGGTGGG--GCTGGCCCAGCCTCTGCTCTCCTCCCCCCCCCCA-------------------------------------GCT------GCTCCCCACCCCCAG------ i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 46233 505 + 1056298 I e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5665409 373 + 108171978 I a score=498984.000000 s hg38.chr22_GL383582v2_alt 51267 72 + 162811 CCCACCTGGCAGTAGCCAT----------------GCTGGGGCTA-------TCAC------CAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGC-GCCAGG- s panTro5.chr22 9006539 71 - 37823149 CCCACCTGGCAGTGGCCAT----------------GCTGGGGCTA-------CCAC------C-GGGGCTGATGCTGAGCTGGGGTGAGGAGGGC-GCCAGG- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115868 72 + 50109623 CCCACCTGGCAGTGGCCAT----------------GCTGGGGCTA-------TCAC------CAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGT-GCCAGG- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3126751 72 + 4464012 CCCACCTGGCAGTGGCCAT----------------GCTGGGGCTA-------CCAC------CAGGGACTGGTGCTGAGCTGGGGTGAGGAGGGT-GCCAGG- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623787 72 - 115148730 CCCACCTGGCAGTGGCCAT----------------GCTGGGGCTA-------TCAC------CAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGT-GCCAGC- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233831 72 + 92844088 CCCACCTGGTAGTGGCCAT----------------GCTGGGGCTA-------CCAC------CAGGGCCTGGTGTTGAGCTGGGGTGAGGAGGGC-TCCAGG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579037 72 - 96509753 CCCACCTGGTAGTGGCCAT----------------GCTGGGGCTA-------CCAC------CAGGGCCTGGTGTTGAGCTGGGGTGAGGAGGGC-TCCAGG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070749 72 - 13098629 CCCACATGGCAGTGGCCAT----------------GCTGGGGCTA-------CCAC------CAGGGCCTGGTGTTGAGCTGGGGTGAGGAGGGC-TCCAGG- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038039 72 - 4483953 CCCACCTGGTAGTGGCCAT----------------GCTGGGGGTA-------CCAC------CAGGGGCTGGTGTTGAGCTGGGGTGAGGAGGGC-TCCAGG- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668074 72 + 33263144 CCCACCTGGTAGTGGCCAT----------------GCTGGGGCTA-------CCAC------CAGGGGCTGGTGTTGAGCTGGGGTGAGGAGGGC-TCCAGG- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932246 72 - 14338769 CCCACCTGGTAGTGGCCAT----------------GCTGGGGCTA-------CCAC------CAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGC-TCCAGG- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886315 72 + 1946073 CCCACCTGGTAGTGGCCAT----------------GCTGGGGCTA-------CCAC------CAGGGGCTGGTGTTGAGCTGGGGTGAGGAGGGC-TCCAGG- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913474 77 - 2117846 CCCACCTGGTAGTGCCCAT----------------GCTGGAGCAC-------CCACCTGACGCTGGTGCTGGTGCTGAGCT-GGGTGAGGAGGGC-CCCAGG- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8830036 71 - 16357246 TCCACCCGGCAGTGCCCAT----------------GCTGGGGCAC-------CCAC------CAGGGGCTGGTGCTGAGCT-GAGTGAGGAGGGC-CCCAGG- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1305758 71 - 1807191 CCCACCTGGCAGTGGCCAT----------------GCTGGGGCAC-------CCAC------CAGGGGCTGGTGCTGAGCT-GGGTGAGGAGGAC-CCCAGG- i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36260199 13 - 42659167 CCCAGCTGGCAAT------------------------------------------------------------------------------------------ i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82778721 55 + 104043685 CAGATCAGAC--------------------------CAGAGGCTA-------CCTG------GCAACACTGA-------CTATGTTTTGGAGGGA-TACAGG- i mm10.chr15 C 0 C 0 s canFam3.chr10 46073012 37 - 69331447 --CATCAGGCTGTGACCAC----------------GG-------------------------CAGAG---------------------GGAGGCC-TGCAGA- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 46738 97 + 1056298 TCCGCCTGGCGCTCACCCTCACCCATTCGAGACCCGCTGGGCCCAAGAAGCTTCCC------CGAACCCCATCCTCAGGCCAGGCAGGGGCGGGTGGCCAAGC i dasNov3.JH570235 I 505 C 0 e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5665409 373 + 108171978 I a score=3135270.000000 s hg38.chr22_GL383582v2_alt 51339 204 + 162811 CCTACCTTAGGGATGCGGAAGCCCTGTACTTCGATGTCACGGGATGTCATATGGGTCACACTCAGGGGGATGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGCAGGGCATGTGAGCCTGGTCACCCATCTCTGGTCGCCGCACCTGCCCTATCACGTCGTCGATCTCCTGTTGGACACGGACTGGACAGACA s panTro5.chr22 9006610 204 - 37823149 CCTACCTTAGGGATGCGGAAGCCCTGTACTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGTGAGCCTGGTCACCCATCTCTGGTCGCCGCACCTGCCCTATCACGTCGTCGATCTCCTGTTGGACACGGCCTGGACAGACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115940 204 + 50109623 CCTACCTTAGGGATGCGGAAGCCCTGTACTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCTGGTCGCCGCACCTGCCCTATCACGTCGTCGATCTCCTGTTGGACACGGCCTGGACAGACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3126823 204 + 4464012 CCTACCTTAGGGATGCGGAAGCCCTGTACTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCTGGTCGCCGCACCTGGCCTATCACGTCGTCGATCTCCTGTTGGACACGGCCTGGACAGACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623859 204 - 115148730 CCTACCTTAGGGATGTGGAAGCCCTGTACTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCTGGTCGCCGCATCTGCCCTATCACGTCGTCGATCTCCTGTTGGACACGGCCTGGAGAGACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84233903 204 + 92844088 CCTACCTTAGGGATGAGGAAGCCCTGTAGTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCAGGTCGCCGCACCTGCCCTATCACGTTGTCGATCTCCTGTTGGACACGGCCTGGACAGACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579109 204 - 96509753 CCTACCTTAGGGATGAGGAAGCCCTGTAGTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCAGGTCGCCGCACCTGCCCTATCACGTTGTCGATCTCCTGTTGGACACGGCCTGGACAGACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7070821 204 - 13098629 CCTACCTTAGGGATGAGGAAGCCCTGTAGTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCAGGTCGCCGCACCTGCCCTATCACGTCGTCGATCTCCTGTTGGACACGGCCTGGACAGACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038111 204 - 4483953 CCTACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACGCATCTCTGGTCGCCGCACCTGCCCTATCACGTCGTCGATCTCCTGTTGGACACGGCCTGGACAGACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668146 204 + 33263144 CCTACCTTAGGGATGAGGAAGCCCTGTAGTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCAGGTCGCCGCACCTGCCCTATCACGTCGTCGATCTCCTGTTGGACACGGCCTGGACAGACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932318 204 - 14338769 CCTACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCAGGTCGCCGCGCCTGTCCTATCACGTCGTCGATCTCCTGTTGGACACGGCCTGGACAGACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886387 204 + 1946073 CCTACCTTAGGGATGAGGAAGCCCTGTACTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCAAGCCTGGTCAGCCATCTCTGGTCGTCGCACCTGCCCTATCACGTCGTCGATCTCCTGTTGGACACGGCCTGGACAGACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913551 203 - 2117846 CCTACCTTAGGGATGAGGAAGCCCTGTACTTCAATGTCTCGGGATGTCATGTGGGTCACACCCAGGGGGACGATGTCCGCAAAGCGCTGCACCTCGTGAATCACAGCAGTGGTGTAGGGCATGTAAGTCTGGTCACCCATCTCTGGTCGCCGCACCCGCCCTATCACGTCGTCGATCTCCTGTTGGACACGGCCTGGGCAGAC- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8830107 204 - 16357246 CCTACCTTAGGGATGAGGAAGCCCTGCACTTCAATGTCTCGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACAGCAGTGGTGTAGGGCATGTGAGCCTGGTCACCCATCTCTGGTCGCCGCACCCGCCCTATCACGTCATCGATCTCCTGTTGGACACGGCCTGGGCAGACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1305829 204 - 1807191 CCTACCTTAGGGATGAGGAAGCCCTGCACTTCAATGTCTCGGGATGTCATGTGGGGCATATTCATGGGGATGATGTCCCCAAAGCGCTGCACCTCGTGAATCACAGCAGTGGTGTAGGGCATGCGAACCTGGTCGCCCATCTCTGGTCGCCGCGCCTGCCCTATCACGTCGTCAATCTCCTGTTGGACACGGCCTGGACAGACA i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5665782 204 + 108171978 CCTACCTTGGGGATGAGGAAGCCCTTCACTTCGATGTCACGGGACGTCATGTGGGGCACCCCCATGGGGATGATGTCCGCGAAGCGCTGCACCTCGTGAATCACAGCAGTCGTGTAGGGCATGTGGGCCTGGTCACCCATTTCTGGTCTCCGCACCTGCCCTATCACTTCGTCAATCTCCTGTTGGACACGGCCTGGACAGACA i micMur3.chr7 I 373 I 194 s otoGar3.GL873526 36260212 204 - 42659167 CTTACCTTGGGGATCAGGAAGCCCTGCACTTCGATGTCTCGGGATGTCATGTGGGGCACGCCCAGGGGAGCGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCGGTGGTGAAGGGCATATGGGTCTGGTCACTCATTTCTGGTCGCCGCACCTGCCCTATCACTTCATCGATCTCCTGTTGTACTCGGCCTGGACAGACA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82778776 204 + 104043685 CCTACCTTAGGGATCAGGAAGCCCTGCACTTCAATGTCACAAGAAGTCCTGTGTGGCAAAGTCATTGGGGCGATGTCAGCAAAGCGCTGCACCTCATGAATGACAGCATTAGTGTAAGGCATGCGAGCCTGGTCTGCCATCTCTGGACGCCGCGCCTGCCCTATGACCTCGTCGATTTCCTCTTGCACTAGGCCTGGAAAGACA i mm10.chr15 C 0 I 1 s canFam3.chr10 46073049 204 - 69331447 CCTACCTTGGGGATGAGGAAGCCCTGCACTTCAGTGTCTCGGGACGTCATGTGGGGCACACCGAGTGGGACGATGTCCCCAAAACGCTGCACCTCATGGATCACGGCCACGGTGAAGGGCATACGGGTCTGGTCTCCCATCTCTGGTAGCTGCTCCCGCCCTATCACCTCATCTATCTCCTGCTGGACACGTCCTAGACACACA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 46835 204 + 1056298 CCTACCTTGGGGATGAGGAAGCCCTGGACCTCGGTGTCGCGGGAGGTCATGTGTGGCACGCCCAGGGGGATGATGTCCCCGTAGCGCTGCACCTCGTGGACCACAGCGTTGGTGAATGGCATGAGCGCCTGGTCTTTCATCTCTGGCTGCCGGCCCGGCCCGATCACCTCGTCAATCTCCTTCTGGACGCGACCTGGACAGACA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T a score=55083.000000 s hg38.chr22_GL383582v2_alt 51543 6 + 162811 TGCGTC s panTro5.chr22 9006814 6 - 37823149 TGCGTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116144 6 + 50109623 TGCGTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127027 6 + 4464012 TGCGTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624063 6 - 115148730 TGCGTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234107 6 + 92844088 TGCGTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579313 6 - 96509753 TGCATC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071025 6 - 13098629 TGCGTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038315 6 - 4483953 TGTGTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668350 6 + 33263144 TGCGTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932522 6 - 14338769 TGCGTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886591 6 + 1946073 TGCGTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913754 5 - 2117846 -GTGTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8830311 6 - 16357246 TGTGTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1306033 6 - 1807191 TGTGTC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36260416 6 - 42659167 AGCATC i otoGar3.GL873526 C 0 M 350 s mm10.chr15 82778981 6 + 104043685 TGTAAC i mm10.chr15 I 1 C 0 s canFam3.chr10 46073253 6 - 69331447 AGCATC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47039 5 + 1056298 AGCGC- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5665986 194 + 108171978 I a score=1229944.000000 s hg38.chr22_GL383582v2_alt 51549 161 + 162811 CCCACAATGGGTCAGCACCCAGGG-GAC---------------ACTC--TCC-------------TTCCT-----------CCTGTGT-----------------TGGAGGAA--------GTTAGGC-----TTAC--AGGAGCC-TGGCCACGCCTGTGCTGGAAGCCCCGGGTGTCCCAGCTAAGCCCAGGGGCCCCCA-----GCTGTACCCTTCCTCCC--TCA----------GTCCCTGCCTTGGG s panTro5.chr22 9006820 171 - 37823149 CCCACAATGGGTCAGCACCCAGGG-GACC-AGCCC--TGA--CACTC--TCC-------------TTCCT-----------CCTGTGT-----------------TGGAGGAA--------GTTAGGC-----TTAC--AGGAGCC-AGGCCACGCCTGTGCTGGAAGCCCCGGGTGTCCCAGCTAAGCCCAGGGGCCCCCA-----CCTGTACCCTTCCTCCC--TCA----------GTCCCTGCCTTGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116150 174 + 50109623 CCCACAATGGGTCAGCACCCAGGGTGTCC-AGCCC--TGA--CACTCCTTCC-------------TGCCT-----------CCTGTGT-----------------TGGAGGAG--------GTCAGGC-----TTAC--AGGATCC-TGGTCAAGCCTGTGCTTGGAGCCCCGGGTGTCCCAGCAAAGTTCATGGGCCCCTG-----CCTGTACCCTTCCTCCC--TCA----------GCCCCTGCACTGTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127033 174 + 4464012 CCCACAATGGGTCAGCACCCAGGGGGTCC-GGCCC--TGA--CACTCCTTCC-------------TGCCT-----------CCTATGT-----------------TGGAGGAG--------GTCAGGC-----TTAC--AGGATCC-TGGTGAAGCCTGTGCTTGGAGCCCCGGGTGTCCCAGCAAAGTTCACGGGCCCCCG-----CCTGTACCCTTCCTCCC--TCG----------GCCCCTGCACTGTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624069 171 - 115148730 CCCACAATGGGTCAGCACCCAGGG-AACC-AGCCC--TGA--CGCTC--TCC-------------TGCCT-----------CCTGTGT-----------------TGGAGGAG--------GTTAGGC-----TTAC--AGGAGCC-TGGCTAAGCCTATGCTTGGAGCCCCGGGTGTCCCAGCTAAGCTCAGGGGCCGCCT-----CCTGTACCCTTCCTCCC--TCA----------GCCCCTGCACTGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234113 167 + 92844088 CCCACAATGGGTCAGCACCTAGGG-GGT--AGCCC--TGA--CACTC------------------TGCCT-----------CCTGTGT-----------------TGGAGGAG--------GTCAGGC-----TTAC--AGGAGCC-TTTTCAAGACTGTGCTGGGAGCCCCGGGTGTCCCAGCTAAGTTCACGGGCCCCCA-----CCTGTACCCTTCCTCCC--TCG----------CCCCCTGCACTCGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579319 167 - 96509753 CCCACAATGGGTCAGCACCTAGGG-GGT--AGCCC--TGA--CACTC------------------TGCCT-----------TCTGTGT-----------------TGGAGGAG--------GTCAGGC-----TTAC--AGGAGCC-TTTTCAAGACTGTGCTGGGAGCCCCGGGTGTCCCAGCTAAGTTCACGGGCCCCCA-----CCTGTACCCTTCCTCCC--TCG----------CCCCCTGCACTTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071031 167 - 13098629 CCCACAATGGGTCAGCACCTAGGG-GGT--AGCCC--TGA--CACTC------------------TGCCT-----------CCTGTGT-----------------TGGAGGAG--------GTCAGGC-----TTAC--AGGAGCC-TTTTCAAGACTGTGCTGGGAGCCCCGGGTGTCCCAGCTAAGTTCACGGGCCCCCA-----CCTGTACCCTTCCTCCC--TCG----------CCCCCTGCACTCGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038321 167 - 4483953 CCCACAATGGGTCAGCACCTAGGG-GGT--GGCCC--TGA--CACTT------------------TGCCT-----------CCTGTGT-----------------TGGAGGAG--------GTCAGGC-----TTAC--AGGAGAC-TGGTCAAGCCTGTGCTGGGAGCCCTGGGTGTCCTAGCTAAGCTCAGGGGCTCCCG-----CCTGTACCCTTCCTCCC--TTG----------CCCCCTGCACTTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668356 167 + 33263144 CCCACAATGGGTCAGCACCTAGGG-AGT--GGCCC--TGA--CACTC------------------TACCT-----------CCTGTGT-----------------TGGAGGAG--------GTCAGGC-----TTAC--AGGAGCC-TGTTCAAGACTGTGCTGGGAGCCCCGGGTGTCTCAGCTAAGTTCACGGGCCCCCA-----CTTGTACCCTTCCTCCC--TCG----------CCCCCTGCACTCGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932528 167 - 14338769 CCCACAATGGGTCAGCACCTAGGG-GGT--GGCCC--TGA--CACTT------------------TGCGT-----------CCTGTGT-----------------TGGAGGAG--------GTCAGGC-----TTAC--AGGAGCC-TGTTCAAGACTGTGCTGGGAGCCCCGGGTGTCCCAGCTAAGTTCACGGGCCCCCA-----CCTGTACCCTTCCTCCC--TCG----------CCCCCTGCACTCGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886597 164 + 1946073 CCCACAATGGGTCAGCACCTAGGG-GGT--GGCCC--TGA--CACTC------------------TGCCT-----------CCTGTGT-----------------TGGAGGAG--------GTCTGGC-----TTAC--AGGAGCC-TGGTCAACACTGTGCTGGGAGCCCCGGGTGTCCCAGCTAAGTTCACGGGCCACCA-----CCTGTACCCT---TCCC--TCG----------CCCCCGGCACTGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913759 182 - 2117846 CCCACAATGGGTCAGCACCCACTG-GACT-GGCCC--TGA-GCATCCCTTCC-------------TGCCT-----------CCTGTAT-----------------TAGAGGAG--------GTCAGGC-----TTAC--AGGAGCC-TGGCCAAGCCTGTGCTTGGAGCCCCAGGTGTCCCAGCTAAGCTCA-GAGTACCCG-----CCTGTACCCTTCCTCCC--TCGCCCACCCCC-CACCCCGTACTGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8830317 183 - 16357246 CCCACAATAGGTCAGCACCCGCAG-GACT-GGCCC--TGA-GCATTCCTTCC-------------TGCCT-----------CCCGTGT-----------------TGGAGGAG--------GTCAGGC-----TCAC--AGGAGCC-TGGCCAAGCCTGTGCTTGGAGCCCCTGGTGTCCCAGCTAAGCTCA-GAGTACCTG-----TCTGTACCCTTCCTCCC--TTGTGCACCCCCGTGCCCCATACTGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1306039 174 - 1807191 CCCACAATGGGTCAGCACCCAGGG-GACT-GGCCC--TGACGCCCTCCTTCC-------------TGCCT-----------CCTGTAT-----------------TAGAGGAG--------GTCAGGC-----TTAC--AGGAGCC-TGGCCAAGCCTGTGCTTGGAGCCCTTGGTGTCCCAGCTAAGCTCA-GGGTACTCG-----CCTGTACCCTTCCTCCC--TCG----------CTCCCTGCACTGGG i cebCap1.NW_016107750v1 C 0 C 0 s mm10.chr15 82778987 183 + 104043685 CTCA----GGTAAGGAAACCAGGA-AGG--GGCCCAGTGT--CCCTC--CAC-------------TACCTTTCTGTAAAGGTCTGGGTC--------------CATGGAAGAAAGATACCCATCATCT-----TTAC--TGGAGTC-TGTGTTAAACATTGCTGGGAGGCACAAGTGTCCCAAGTGAGCTTATGAACTG-TG-----CTTCTACCCT-CCTCCT--CCT----------TTCTTCTCA----- i mm10.chr15 C 0 I 1 s canFam3.chr10 46073259 167 - 69331447 CCCACAGTGG-TCAGAACCCAGGG-GTCTGGACTC--CGA--CG-TC------------------TGACG-----------CCTG--------------------TGGAGGCA--------GCT---C-----TTACCTCTGAGCCATGTCCCAGCCTCTACTCGGAGCTTCTGGGGGACAAACCAGGCTCAAGGGACCCCAGGCTGTCCATCCTCTCCCTCCC--CCA----------TCCCATCCCACC-- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47044 199 + 1056298 CCCACAGTGGGCCGGAGCCCAGGG-GGCTGGGCGC--CGA--TCCTG--CCCGGACCGCAGCGGGCAACC-----------CCTGTGCTGGGGGCCGTGCCCGCGTGGAGGAG--------GAGGGGCCGCTGTGAC--AGGAGCC-CCGGCCCAGCTCTGGGCAGTGTCCCTGGTGTCC-----AAGCTCAGGTGCCCCAG-----CCTGTCCCTGTCCACCCCTTCA----------TCCCCAGGC----- i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36260422 350 - 42659167 M e proCoq1.NW_012136747v1 5060194 19936 - 6317780 T e micMur3.chr7 5665986 194 + 108171978 I a score=31488.000000 s hg38.chr22_GL383582v2_alt 51710 3 + 162811 CCC s panTro5.chr22 9006991 3 - 37823149 CCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116324 3 + 50109623 TCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127207 3 + 4464012 TCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624240 3 - 115148730 CCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234280 3 + 92844088 CCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579486 3 - 96509753 CCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071198 3 - 13098629 CCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038488 3 - 4483953 CCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668523 3 + 33263144 CCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932695 3 - 14338769 CCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886761 3 + 1946073 TCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913941 3 - 2117846 CTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8830500 3 - 16357246 CCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1306213 3 - 1807191 TCC i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5040258 3 - 6317780 CCC i proCoq1.NW_012136747v1 T 19936 C 0 s mm10.chr15 82779171 2 + 104043685 CC- i mm10.chr15 I 1 C 0 s canFam3.chr10 46073426 3 - 69331447 CCC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47243 3 + 1056298 CCC i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36260422 350 - 42659167 M e micMur3.chr7 5665986 194 + 108171978 I a score=1909944.000000 s hg38.chr22_GL383582v2_alt 51713 129 + 162811 CAGCTGGGCTCACGCTGCACATCCAGGTGTAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGGTCGAGGTGGTCACCATCCCGGCAAGGAACAGGTTACCCACCACTATGCGCAGGTTCTCATCATTG s panTro5.chr22 9006994 129 - 37823149 CAGCTGGGCTCACGCTGCACATCCGGATGTAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGACCGAGGTGGTCACCATCCCGGCAAGGAACAGGTCAGCCACCACCATGCGCAGGTTCTCATCATTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116327 129 + 50109623 CAGATGGGCTCACGCTGCACATCCGGATGTAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGGTCGAGGTGGTCACCATCCCGGCAGAGAACAGGTCAGCCACCACCATGCGCAGGTTCTCATCATTG i panPan2.chr22 C 0 T 9576 s gorGor5.CYUI01015375v1 3127210 129 + 4464012 CAGATGGGCTCACGCTGCACATCCGGATGTAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGGTCGAGGTGGTCACCATCCCGGCAGAGAACAGGTCAGCCACCACTATGCGCAGGTTCTCATCATTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624243 129 - 115148730 CAGCTGGGCTCACGCTGCACATCCAGGTGTAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGGTCGAGGTGGTCACCATCCCGGCAAGGAACAGGTCAGCCACCACCATGCACAGGTTCTCATCACTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234283 129 + 92844088 CAGCTGGACTCACGCTGCACATCCGGGTGCAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGGTCGAGGTGGTCACCATCCCAGCAGAGAACAAGTCAGCTACCACTATGCGCAGGTTCTCTTCATTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579489 129 - 96509753 CAGCTGGACTCACGCTGCACATCCGGGTGCAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGGTCGAGGTGGTCACCATCCCAGCAGAGAACAAGTCAGCCACCACTATGCGCAGGTTCTCTTCATTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071201 129 - 13098629 CAGCTGGACTCACGCTGCACATCCGGGTGCAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGGTCGAGGTGGTCACCATCCCAGCAGAGAACAAGTCAGCCACCACCATGCGCAGGTTCTCTTCATTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038491 129 - 4483953 CAGCTGGACTCACGCTGCACATCCGGGTGCAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGGTCGAGGTGGTCACCATCCCAGCAAAGAACAGGTCAGCCACCACCATGCGCAGGTTCTCTTCATTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668526 129 + 33263144 CTGCTGGACTCACGCTGCACATCCGGGTGCAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGGTCGAGGTGGTCACCATCCCAGCAGAGAACAGGTCAGCCACCACTATGCGCAGGTTCTCTTCATTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932698 129 - 14338769 CAGCTGGACTCACGCTGCACATCCGGGTGCAGGATCATGAGCAGGAGGCCCCAGGCCAGTGTGGTCGAGGTGGTCACCATCCCAGCAGAGAACAGGTCAGCCACCACCATGCGCAGGTTCTCTTCATTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886764 129 + 1946073 CAGCTGGGCTCACGCTGTACATCCGGGTGCAGGATCATGAGTAGGAGGCCCCAGGCCAGCGTGGTCGAGGTGGTCACCATCCCAGCAGAGAACAGGTCAGCCACCACCATGCGCAGGTTCTCTTCATTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1913944 129 - 2117846 CAGCTGGGCTCACGCTGCACATCTGGGTGAAGGATCATCAGCAGGAGGCCCCAGGCCAGCGTGATGGAGGTGGTCACCATCCCGGCAGAGAACAGATCAGCTACTACTAGGTGCAGGTTTTCATCATTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8830503 129 - 16357246 CAGCTGGGCTCACGCTGCACATCTGGGTGAAGGATCATCAGCAGGAGGCCCCAGGCCAGCGTGATCGAGGTGGTCACCATCCCAGCAGAGAACAGATCAGCTACCACTAGGCGCAGGTTTTCATCATTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1306216 129 - 1807191 CAGCTGGGCTCACGCTGCACATCTGGGTGAAGGATCATGAGCAGAAGGCCCCAGGCCAGCGTGATCGAGGTGGTCACCATCCCAGCAGAGAACAGATCAGCTACCACTAGGCGCAGGTTTTCATCATTG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5666180 129 + 108171978 CAGCCGGGCTCACGCTGCACATCCGGGTGCAGGATCATGAGCAGCAGGGCCCAGGCCAGTGTGGTCGAGGAGGTCTCCATCCCAGCGGAGAACAGGTCAGCCACCACCAGGCGCAGGTTATCATCGTTG i micMur3.chr7 I 194 C 0 s proCoq1.NW_012136747v1 5040261 129 - 6317780 CAGCCGGGCTCACGCTGCACATCCGGGTGCAGGATCATGAGCAGGAGGGCCCAGTCCAGCGTGGTGGAGGTGGTCACCATCCCAGCGGAGAACAGGTCAGCCACCACCAGGCGCAGGTTCTCATCATTG i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82779173 129 + 104043685 CCACCATTCTCACTCTGAACATCTGGATGCAAGATCATGAGCAGCAGGGCCCAGGACAGTGTGGTTGAAGTGGGTGCAGTCCCAGCACCAAACAGGTCAAGGACAATCTGACGTAGATTTGCTTCATTG i mm10.chr15 C 0 C 0 s canFam3.chr10 46073429 129 - 69331447 AGGCTGGGCTCACGCTGCACGTCCGGGTGCAGGATCATGAGCAGGAGGGCCCAGGTCAGCGTGATTGAGGTGGACACCATCCCAGCGACGAACAGGTCAGAGGTCACCATGCACAGGTTCTCCTCATTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47246 129 + 1056298 AGGCCAGGCTCACGCTGCACGTCCGGGTGCAGGACCATGAGCAGGAGGGCCCAGTCCAGCGTGGTCGAGGTGGTCACCATGCCCGCCGAGAACAGGTCGGCCACCACCAGGCGCAGGTTCGCGGCAGTG i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36260422 350 - 42659167 M a score=165238.000000 s hg38.chr22_GL383582v2_alt 51842 12 + 162811 AAGCTGCTCTCA s panTro5.chr22 9007123 12 - 37823149 AAGCTGCTCTCA i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127339 12 + 4464012 AAGCTGCTCTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624372 12 - 115148730 AAGCTGCTCTCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234412 12 + 92844088 AAGCTACTCTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579618 12 - 96509753 AAGCTACTCTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071330 12 - 13098629 AAGCTACTCTCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038620 12 - 4483953 AAGCTGCTCTCG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668655 12 + 33263144 AAGCTACTCTCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932827 12 - 14338769 AAGCTACTCTCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886893 12 + 1946073 AAGCTGCTCTCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914073 12 - 2117846 AAGCTGCTCTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8830632 12 - 16357246 AAGCTGCTCTCG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1306345 12 - 1807191 AAGCTGCTCTCG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5666309 12 + 108171978 AAGCTGCTCTCG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5040390 12 - 6317780 AAGCTGCTCTCG i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82779302 12 + 104043685 AAGCTACTCTCA i mm10.chr15 C 0 C 0 s canFam3.chr10 46073558 12 - 69331447 AAGCTGGTCTTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47375 12 + 1056298 AAGCTGCTCTGG i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36260422 350 - 42659167 M e panPan2.chr22 41116456 9576 + 50109623 T a score=291822.000000 s hg38.chr22_GL383582v2_alt 51854 18 + 162811 GGGCTCCCCTTGGCCTGA s panTro5.chr22 9007135 18 - 37823149 GGGTTCCCCTTGGCCTGA i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127351 18 + 4464012 GGGTTCCTCTTGGCCTGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624384 18 - 115148730 GGGTTCCCCTTGGCCTGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234424 18 + 92844088 GGGTTCCCCTTGGCCTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579630 18 - 96509753 GGGTTCCCCTTGGCCTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071342 18 - 13098629 GGGTTCCCCTTGGCCTGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038632 18 - 4483953 GGGTTCCTCTTGGCCTGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668667 18 + 33263144 GGGTTCCCCTTGGCCTGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932839 18 - 14338769 GGGTTCCCCTTGGCCTGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886905 18 + 1946073 GGGTTCCCCTTGGCCTGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914085 18 - 2117846 GGGTTCCCCTTGGTCTGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8830644 18 - 16357246 GGGTTCCCTTTGGCCTGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1306357 18 - 1807191 GGGTTCCCCTTGGCCTGA i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5666321 18 + 108171978 GGGTTCCCCTTGGCCTGA i micMur3.chr7 C 0 I 37 s proCoq1.NW_012136747v1 5040402 18 - 6317780 GGGTTTCCCTTGGTCTGA i proCoq1.NW_012136747v1 C 0 I 175 s otoGar3.GL873526 36260779 18 - 42659167 GGGTTCCCCTTGGCCTGA i otoGar3.GL873526 M 350 C 0 s mm10.chr15 82779314 18 + 104043685 GGGTTCCCCTTTGCCTAG i mm10.chr15 C 0 I 3 s canFam3.chr10 46073570 18 - 69331447 GGGTTCCCTTTGGCCTAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47387 18 + 1056298 GGGTTCCCTTTCGCCTGG i dasNov3.JH570235 C 0 C 0 e panPan2.chr22 41116456 9576 + 50109623 T a score=225928.000000 s hg38.chr22_GL383582v2_alt 51872 29 + 162811 GCAGGGCCG----AGAGGATA--CTCAGGGGATAG s panTro5.chr22 9007153 29 - 37823149 GCAGGGCCG----AGAGGATA--CTCAGGGGATAG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127369 27 + 4464012 GCAGGGCCG----AGAGGATA--CTC--GGGACAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624402 29 - 115148730 GCAGGGCCC----AGAGGGTA--CTCAGGGGACAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234442 29 + 92844088 GCAGGGCCA----AGAGGGTG--CTCAGGGGACAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579648 29 - 96509753 GCAGGGCCA----AGAGGGTG--CTCAGGGGACAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071360 29 - 13098629 GCAGGGCCA----AGAGGGTG--CTCAGGGGACAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038650 28 - 4483953 GCAGGGCCG----AGAGGGTA--CTC-GGGGACAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668685 29 + 33263144 GCAGGGCCA----AGAGGGTG--CTCAGGGGACAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932857 29 - 14338769 GCAGGGCCA----AGAGGGTG--CTCAGGGGACAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886923 29 + 1946073 GCAGGGCCA----GGAGGGTG--CTCAGGGGACAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914103 29 - 2117846 GCAGGGCCA----AGAGGGTA--CTCAGGAGACAA i calJac3.chrUn_GL286373 C 0 I 17062 s saiBol1.JH378157 8830662 29 - 16357246 GCAGGGCCG----AGAGGGTA--CTCAGGAGACAG i saiBol1.JH378157 C 0 I 15555 s cebCap1.NW_016107750v1 1306375 29 - 1807191 GCAGGGCCA----AGAGGGTA--CTCAGGAGACAG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36260797 24 - 42659167 -CCAGGCAA----AGAGGGTG------GGGGATAG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82779335 28 + 104043685 ACAGAA-AA----ACAGTAGA--CTCAGTGGAGAG i mm10.chr15 I 3 C 0 s canFam3.chr10 46073588 29 - 69331447 -----GCCATGTGAGAGGGTGAGCTCTGGGG-CAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47405 27 + 1056298 --GGGGCAG----AGAGTCGG--CTCGGGGGCCAG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5040420 175 - 6317780 I e micMur3.chr7 5666339 37 + 108171978 I e panPan2.chr22 41116456 9576 + 50109623 T a score=15463.000000 s hg38.chr22_GL383582v2_alt 51901 8 + 162811 AACGGGGT s panTro5.chr22 9007182 8 - 37823149 AACGGGGT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127396 8 + 4464012 AACGGGGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624431 8 - 115148730 AGCGGGGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234471 8 + 92844088 ATTGGGGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579677 8 - 96509753 ATTGGGGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071389 8 - 13098629 ATTGGGGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038678 8 - 4483953 AGCGGGAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668714 8 + 33263144 ATTGGGGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932886 8 - 14338769 ATTGGGGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886952 8 + 1946073 ATTGGGGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931194 8 - 2117846 AGGGGGAA i calJac3.chrUn_GL286373 I 17062 C 0 s saiBol1.JH378157 8846246 8 - 16357246 AGAGGGAA i saiBol1.JH378157 I 15555 C 0 s otoGar3.GL873526 36260821 6 - 42659167 AAGAGG-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82779363 7 + 104043685 ACTAGAG- i mm10.chr15 C 0 C 0 s canFam3.chr10 46073617 8 - 69331447 AGGGAGAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47432 7 + 1056298 GGGAGGG- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5040420 175 - 6317780 I e micMur3.chr7 5666339 37 + 108171978 I e cebCap1.NW_016107750v1 1306404 0 - 1807191 C e panPan2.chr22 41116456 9576 + 50109623 T a score=167017.000000 s hg38.chr22_GL383582v2_alt 51909 17 + 162811 AGCCCCCAAATGACCTC s panTro5.chr22 9007190 17 - 37823149 AGCCCCCAAATGACCTC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127404 17 + 4464012 AGCCCCCAAATGACCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624439 17 - 115148730 AGCCCCCAAATGACCTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234479 17 + 92844088 AGCCCCCTAATGACCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579685 17 - 96509753 AGCCCCCTAATGACCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071397 17 - 13098629 AGCCCCCTAATGACCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038686 17 - 4483953 AGCCCCCAAACGTCCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668722 17 + 33263144 AGCCCCCTAATGACCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932894 17 - 14338769 AGCCCCCTAATGACCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886960 17 + 1946073 AGCCCCCTAATGACCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931202 17 - 2117846 AGTCCCCAAATGACCTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8846254 17 - 16357246 AGTCCCCAAATGACCTC i saiBol1.JH378157 C 0 C 0 s micMur3.chr7 5666376 17 + 108171978 AGCCCCCAAATGACCCT i micMur3.chr7 I 37 C 0 s otoGar3.GL873526 36260827 17 - 42659167 AAGCCCCAAATGACCCT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82779370 16 + 104043685 -GGCCCATAACACCCTC i mm10.chr15 C 0 I 53 s canFam3.chr10 46073625 17 - 69331447 AGCCCCCGGATGGCCTC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47439 15 + 1056298 AGCCCC--AGTCAGCCC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5040420 175 - 6317780 I e cebCap1.NW_016107750v1 1306404 0 - 1807191 C e panPan2.chr22 41116456 9576 + 50109623 T a score=91709.000000 s hg38.chr22_GL383582v2_alt 51926 13 + 162811 ---CAATTCTGCACCT s panTro5.chr22 9007207 13 - 37823149 ---CAATTCTGCACCT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127421 13 + 4464012 ---CAATTCTGCACAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624456 13 - 115148730 ---CCATTCTTTATCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234496 13 + 92844088 ---CCATTCTGTACCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579702 13 - 96509753 ---CCATTCTGTACCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071414 13 - 13098629 ---CCATTCTGTACCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038703 13 - 4483953 ---CCATTCTGCACCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668739 13 + 33263144 ---CCATTCTGTACCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932911 13 - 14338769 ---CCATTCTGTACCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886977 13 + 1946073 ---CCATTCTGTACCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931219 13 - 2117846 ---CTATTCTGCACCT i calJac3.chrUn_GL286373 C 0 T 17100 s saiBol1.JH378157 8846271 13 - 16357246 ---CTATTTTTCGCCT i saiBol1.JH378157 C 0 T 15593 s micMur3.chr7 5666393 13 + 108171978 ---CCATGCTGCACCT i micMur3.chr7 C 0 C 0 s otoGar3.GL873526 36260844 13 - 42659167 ---CCATTTTGCACCT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46073642 12 - 69331447 ---CCACCCTGCACC- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47454 11 + 1056298 CACCCGTACCG----- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82779386 53 + 104043685 I e proCoq1.NW_012136747v1 5040420 175 - 6317780 I e cebCap1.NW_016107750v1 1306404 0 - 1807191 C e panPan2.chr22 41116456 9576 + 50109623 T a score=81596.000000 s hg38.chr22_GL383582v2_alt 51939 8 + 162811 GTCAGCCC s panTro5.chr22 9007220 8 - 37823149 GTCAGCCC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127434 8 + 4464012 GTCGGCCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624469 8 - 115148730 GTCAGCCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234509 8 + 92844088 ATCAGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579715 8 - 96509753 ATCAGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071427 8 - 13098629 ATCAGCCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038716 8 - 4483953 GTCAGCCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668752 8 + 33263144 GTCAGCCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932924 8 - 14338769 GTCAGCCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886990 8 + 1946073 GTCAGCCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914132 8 - 2117846 GTCAACCC i calJac3.chrUn_GL286373 T 17100 C 0 s saiBol1.JH378157 8830691 8 - 16357246 GTCAACCC i saiBol1.JH378157 T 15593 C 0 s cebCap1.NW_016107750v1 1306404 8 - 1807191 GTCAACCC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5666406 8 + 108171978 GTCAGCCC i micMur3.chr7 C 0 I 1832 s otoGar3.GL873526 36260857 8 - 42659167 GTCACCCA i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 47465 8 + 1056298 CTCAGCCT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82779386 53 + 104043685 I e canFam3.chr10 46073654 0 - 69331447 C e proCoq1.NW_012136747v1 5040420 175 - 6317780 I e panPan2.chr22 41116456 9576 + 50109623 T a score=522336.000000 s hg38.chr22_GL383582v2_alt 51947 97 + 162811 AGATGCGGCTCGCCGGGTGATGCACTGGTCCAACC--TTTTGCCCAGCCTCCCCTCATTCCTCCTGGGACGTTCAACCCACCACC--CTTGCCCCCCACCG s panTro5.chr22 9007228 97 - 37823149 AGATGCGGCTCGCCGGGTGATGCACTGGCCCAACC--TTTTGCCCAGCCTCCCCTCATTCCTCCTGGGACACTCAACCCACCACC--CTTGCCCCTCACCG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127442 97 + 4464012 AGATGCGGCTCACCGGGTGATGCACTGGCCCAACC--TTTTGCCCAGCCTCCCCTCATTCCTCCCGGGACGCTCAACCCACCACC--CTTGCCCCCCACCG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624477 96 - 115148730 AGGTGCCACTCACCAGGTGATCCAATGGACCCACCTTTTTTGCCCAACCTCCCCTCATTCCTCCCGGGAGCTTCAACCCACCAC-----TGGTACCCACCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234517 95 + 92844088 AGATGCTGCTTGCCGGG--ATGCCCTGGCCCCACC--TTTTGCCCAGCCTCCCCTCATTCCTCCTGGGATGCTCAATCCACCACC--CTTGCTCCCTACCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579723 95 - 96509753 AGATGCTGCTTGCCGGG--ATGCCCTGGCCCCACC--TTTTGCCCAGCCTCCCCTCATTCCTCCTGGGATGCTCAATCCACCACC--CTTGCTCCCTACCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071435 95 - 13098629 AGATGCTGCTTGCCGGG--ATGCCCTGGCCCCACC--TTTTGCCCAGCCTCCCCTCATTCCTCCTGGGATGCTCAATCCACCACC--CTTGCTCCCTACCG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038724 96 - 4483953 AGGTGCCACTCACCAGGTAATCCAGCGGCCCCACC--TTTTGCCTGGCCACTCCTCATTCCTCCCAGGA-GCTCAACCCACCACC--CTTGGTCCCCACCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668760 95 + 33263144 AGAGGCTGCTTGCCAGG--ATGCCCTGGCCCCACC--GTTTGCCCAGCCTCCCTTCATTCCTCCTGGGATGCTCAATCCACCACC--CTTGGTCCCCACCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13932932 95 - 14338769 AGATGCTGCTTGCCGGG--ATGCCCTGGCCCCACC--TTTTGCCCAGCCTCCCCTCATTCCTCCTGGGATGTTCAATCCACCACC--CTTGCTCCCCACCG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 886998 97 + 1946073 AGATGCTGCTCGCCGGGTGATGCCCTCGCCCCACC--TTTTGCCCAGCCTCCCCTCATTCCTCCCGGGATGCTCAATCCACCACC--CTTGCACCCCACCG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914140 97 - 2117846 AGGTGCTGCTTGCAGGGTGATGCACCAGCCCCAAC--TTTTGCCTGGCCACTCCTCATTGTTCTCTGGACCCTCAACCCACCATC--CCTGCTCCCCACCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8830699 99 - 16357246 AGGTGCTGCTTGCAGGGTGATGCACCAGTCCCAGC--TTTTGCCTGGTCACTCCTCATTGCTCTCTGGACCCTCAACCCACCATCCTCCTGCTCCCCACCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1306412 97 - 1807191 AGGTGCTGCTCACTGGGTGATGCACCAGCCCCAGC--TTTTGCCTGGCCACTCCTCATTGCTCTCTGGACCCTCAACCCACCACC--CCTGCACCCCACCC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36260865 93 - 42659167 TGGGCCAGCTCA-GGGATGGTGAACTGGCCCTGCC----CTACCTGTCCTGGACCAACTTGTCAGGGGACCATCAAGCCACTGT---TTTGGCCCGGTCCC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46073654 75 - 69331447 ----------CACTGGGTGATACAC-GGCCCCACC--TTCG--TGGGCCT-------TGGTTCTTGGGGCCCTCATCCCGCAACC--ATTGTCCCGGAC-- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47473 27 + 1056298 -----------------GGAAGCCCCGGACCCTGT-------CTCGGCCTC-------------------------------------------------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82779386 53 + 104043685 I e proCoq1.NW_012136747v1 5040420 175 - 6317780 I e micMur3.chr7 5666414 1832 + 108171978 I e panPan2.chr22 41116456 9576 + 50109623 T a score=80267.000000 s hg38.chr22_GL383582v2_alt 52044 11 + 162811 TGGCAGCCACT s panTro5.chr22 9007325 11 - 37823149 TGGCAGCCGCT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127539 11 + 4464012 TGTCAGCTGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624573 11 - 115148730 TGTCAGCTGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234612 11 + 92844088 TGGCAGCCGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579818 11 - 96509753 TGGCAGCCGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071530 11 - 13098629 TGGCAGCCGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038820 11 - 4483953 TGGCAGCCGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668855 11 + 33263144 TGGCAGCCGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933027 11 - 14338769 TGGCAGCCGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887095 11 + 1946073 TGGCAGCTGCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914237 11 - 2117846 TGGCAGCTGCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8830798 11 - 16357246 TGGCAGCCACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1306509 11 - 1807191 TGGCAGCCGCT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36260958 10 - 42659167 TGACAG-TGCT i otoGar3.GL873526 C 0 I 1 s mm10.chr15 82779439 11 + 104043685 GGACACCAGTT i mm10.chr15 I 53 C 0 s canFam3.chr10 46073729 1 - 69331447 ----------T i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 47500 8 + 1056298 --GCAGGCCC- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5040420 175 - 6317780 I e micMur3.chr7 5666414 1832 + 108171978 I e panPan2.chr22 41116456 9576 + 50109623 T a score=1507488.000000 s hg38.chr22_GL383582v2_alt 52055 99 + 162811 CTCACCTTCTCCTTCTTTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCAGTTAGCAGCTCATCCAGC s panTro5.chr22 9007336 99 - 37823149 CTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGGGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCAGTTAGCAGCTCATCCAGC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127550 99 + 4464012 CTCACCTTCTCCATCTCCGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCAGTTAGCAGCTCATCCAGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624584 99 - 115148730 CTCACCTTATCCATCTCTGCCAGGAAGGCATCAGTCAGGTCTTGGGGTGGCTGGGCTGGGTTCCAGATCATCCTGTGCTTAGTCAGCAGCTCACCCAGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234623 99 + 92844088 CTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCCAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579829 99 - 96509753 CTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGATCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCTAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071541 99 - 13098629 CTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGATCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCTAGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038831 99 - 4483953 CTCACCTTCTCCATCTCTGCCAGGAAGGCGTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCTAGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668866 99 + 33263144 CTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGATCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCTAGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933038 99 - 14338769 CTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCCAGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887106 99 + 1946073 CTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCTAGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914248 99 - 2117846 CCCACCTTCTCCATCTCTGCCAGAAAGGCTTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCAGTCAGCAGCTCATCCAGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8830809 99 - 16357246 CCCACCTTCTCCATCTCTGCCAGGAAGGTTTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGCTCAGCAGCTCATCCAGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1306520 99 - 1807191 CCCACCTTCTCCATCTCTGCCAGGAAGGTTTCAGTCAGGTCTTGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGTTCAGCAGCTCATCCAGC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5668246 99 + 108171978 CTCACCTTCTCCACCTCGGCCAGGAAGGCGTCAGTCAGGTCTCGGGGTGGCTGTGCTGGGTCCCAGGTCATCCTGTGCTCGGTCACCAGCTCATCCAGC i micMur3.chr7 I 1832 I 88 s proCoq1.NW_012136747v1 5040595 99 - 6317780 CTCACCTTCTCCACCTCGGCCAGGAAGGCATCAGTCAGGTCTCGGGGTGGCTGGGCCGGGTCCCGGGTCATCCTGTGCTCGGTCACCAGCTCATCCAGC i proCoq1.NW_012136747v1 I 175 C 0 s otoGar3.GL873526 36260969 99 - 42659167 CTCACCTTCTCCACCTCGGCCAGGAAGGCATCTGTCAGGTCTCGAGGTGACTGGGCTGGGTCCCAGGTCATCCTGTGCTCAGTCACCAGCTCATCCAAC i otoGar3.GL873526 I 1 C 0 s mm10.chr15 82779450 99 + 104043685 CTCACTTTCTCCATCTCAGCCAGAAAGGCATCAATCAAATCTCGAGGTGGCTGGTCAGGGTCCCAGGTCCTCTTGTGCTCAGTCAACAGCTTATCCACC i mm10.chr15 C 0 C 0 s canFam3.chr10 46073731 99 - 69331447 CTCACTTTTTCTATCTCATCCACGAAGGCGTCGATCAGGTGTCGGGGTGGCTGGGTGGGGTCCCGGGTCTTCCTGTGCTCCTGGATCATTTCATTTGTC i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 47508 99 + 1056298 CTCACCTTCTCCACCTCGGCCAGGTAGGCGTCGGTCAGGTCTCGGGGTGGCTGGGTGGGGTCCCAGGTCTCTCTGTGCTCAGTGACCATCTCATCCATC i dasNov3.JH570235 C 0 C 0 e panPan2.chr22 41116456 9576 + 50109623 T a score=192333.000000 s hg38.chr22_GL383582v2_alt 52154 17 + 162811 TGGGTCAGGAAAGCCTT s panTro5.chr22 9007435 17 - 37823149 TGGGTCAGGAAAGCCTT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127649 17 + 4464012 TGGGTCAGGAAAGCCTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624683 17 - 115148730 TGGGCCAGGAAAGCCTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234722 17 + 92844088 TGGGTCAGGAAAGCCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87579928 17 - 96509753 TGGGTCAGGAAAGCCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071640 17 - 13098629 TGGGTCAGGAAAGCCTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4038930 17 - 4483953 TGGGTCAGGAAAGCCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24668965 17 + 33263144 TGGGTCAGGAAAGCCTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933137 17 - 14338769 TGGGTCAGGAAAGCCTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887205 17 + 1946073 TGGGTCAGTAAAGCCTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914347 17 - 2117846 TGGGCCAGGAAAGCCTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8830908 17 - 16357246 TGGTCCAGGAAAGCCTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1306619 17 - 1807191 TGGGCCAGGAAAGCCTT i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5040694 17 - 6317780 AGGGCCATGAAAGCCTT i proCoq1.NW_012136747v1 C 0 I 547 s otoGar3.GL873526 36261068 17 - 42659167 AGGGCCATGAATTCTCT i otoGar3.GL873526 C 0 I 4 s mm10.chr15 82779549 17 + 104043685 ATGGTGAGAAATGTCGT i mm10.chr15 C 0 C 0 s canFam3.chr10 46073830 17 - 69331447 AGGGTTATGAAGGCCTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47607 17 + 1056298 AGGTCCAAGAAGGCCTT i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5668345 88 + 108171978 I e panPan2.chr22 41116456 9576 + 50109623 T a score=757244.000000 s hg38.chr22_GL383582v2_alt 52171 75 + 162811 TTGGAAGCGTAGGACCTTGCCAGCCAGCGCTGGGATGTGCGGGAGGACGGGGACAGCATTCAGCACCTACACCAG s panTro5.chr22 9007452 75 - 37823149 TTGGAAGCGTAGGACCTTGCCAGCCAGCGCTGGGATGTGCAGGAGGACGGGGATGGCATTCAGCACCTACACCAG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127666 74 + 4464012 TTGGAAGCGTAGGACCTTGCCAGCCAGCCCTGGGAT-CGCAGGAGGACGGGGATGGCATTCAGCACCTACAGCAG i gorGor5.CYUI01015375v1 C 0 I 2 s nomLeu3.chr7b 106624700 75 - 115148730 TTGGGAGTGTAAGACCTTGCCAGCCAGCCCAGGGATGCGCAGGAGGACGGGGATGGCATTCAGCACCTGCACTAG i nomLeu3.chr7b C 0 I 2 s rheMac8.chr10 84234739 75 + 92844088 TTGGGAGCGTAGGACCTTGCCAGCCAGCCCAGGGATGCGCAGGAGGAGGGGGACGGCATTCAGCACCTACACCAG i rheMac8.chr10 C 0 I 2 s macFas5.chr10 87579945 75 - 96509753 TTGGGAGCGTAGGACCTTGCCAGCCAGCCCAGGGATGCGCAGGAGGAGGGGGACGGCATTCAGCACCTACACCAG i macFas5.chr10 C 0 I 2 s macNem1.NW_012012688v1 7071657 75 - 13098629 TTGGGAGCGTAGGACCTTGCCAGCCAGCCCAGGGATGCGCAGGAGGAGGGGGATGGCATTCAGCACCTACACCAG i macNem1.NW_012012688v1 C 0 I 2 s cerAty1.NW_011999588v1 4038947 75 - 4483953 TTGGGAGCGTAGGACCTTGCCAGCCAGCGCTGGGATGCGCAGGAGGAGGGGGATGGCATTCAGCACCTACACCAG i cerAty1.NW_011999588v1 C 0 I 2 s chlSab2.chr19 24668982 75 + 33263144 TTGGGAGCGTAGGACCTTGCCAGCCAGCCCAGGGATGTGCAGGAGGAGGGGGATGGCATTCAGCACCTACACCAG i chlSab2.chr19 C 0 I 2 s manLeu1.NW_012102031v1 13933154 75 - 14338769 TTGGGAGCGTAGGACCTTGCCAGCCAGCGCTGGGATGCGCAGGAGGAGGGGGACGGCATTCAGCACCTACACCAG i manLeu1.NW_012102031v1 C 0 I 2 s colAng1.NW_012115588v1 887222 75 + 1946073 TTGGGAGGGTAGGACCTTGCCAGCCAGCGCTGGGATGCGCAGGAGGAGGGGGATGGCATTCAGCACCTACACCAG i colAng1.NW_012115588v1 C 0 I 2 s calJac3.chrUn_GL286373 1914364 75 - 2117846 TTGGGAGCGTAAGACCTTGCCAGCCAGCCCCGGGATGCGCAGAAGGACAGGGATGGCATTCAGCACCTGCACCAG i calJac3.chrUn_GL286373 C 0 I 2 s saiBol1.JH378157 8830925 75 - 16357246 TTGGGAGCGTAAGACCTTGCCAGCCAGCCACGGGATGTGCAGGAGGACAGGGATAGCGTTCAGCAGCTGCACCAG i saiBol1.JH378157 C 0 I 2 s cebCap1.NW_016107750v1 1306636 75 - 1807191 TTGGGAGCGTAACGCCTTGCCAGCCAGCCCGGGGATGCGCAGGAGGACAGGGATGGCATTCAGCACCTGCACCAG i cebCap1.NW_016107750v1 C 0 I 2 s otoGar3.GL873526 36261089 71 - 42659167 TTAGGG----ATGACCTTGTGAACCAACCCCGGGATGCGCAGGAGGACAGGGATAAAATTCAGCACCTGTGCCAG i otoGar3.GL873526 I 4 I 2 s mm10.chr15 82779566 75 + 104043685 TTGCCCAGGGAAGATTTTATCAGCCAACCCTGGGATGCGCAGGACAATTGGGAACATCTTCACAACCTGGAACAG i mm10.chr15 C 0 I 2 s canFam3.chr10 46073847 75 - 69331447 CTGCGCGGAGAAGACCTTGCTGGCCAGTCCCGGGATGTGCAGGAGCACGGGGATGGAGTTCAGGGCCTGCGGGGT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47624 75 + 1056298 CTGCGAGGGGAAGGCCTTGCCCGCCACCCCGGGGATGCGCAGGAGCCCCGGGACCACGTTCAGCACCTGTGCGGG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5040711 547 - 6317780 I e micMur3.chr7 5668345 88 + 108171978 I e panPan2.chr22 41116456 9576 + 50109623 T a score=77982.000000 s hg38.chr22_GL383582v2_alt 52246 6 + 162811 ACAGAA s panTro5.chr22 9007527 6 - 37823149 ACAGAA i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127742 6 + 4464012 ACAGAA i gorGor5.CYUI01015375v1 I 2 C 0 s nomLeu3.chr7b 106624777 6 - 115148730 ACAGAA i nomLeu3.chr7b I 2 C 0 s rheMac8.chr10 84234816 6 + 92844088 ACAGAA i rheMac8.chr10 I 2 C 0 s macFas5.chr10 87580022 6 - 96509753 ACAGAA i macFas5.chr10 I 2 C 0 s macNem1.NW_012012688v1 7071734 6 - 13098629 ACAGAA i macNem1.NW_012012688v1 I 2 C 0 s cerAty1.NW_011999588v1 4039024 6 - 4483953 ACAGAA i cerAty1.NW_011999588v1 I 2 C 0 s chlSab2.chr19 24669059 6 + 33263144 ACAAAA i chlSab2.chr19 I 2 C 0 s manLeu1.NW_012102031v1 13933231 6 - 14338769 ACAGAA i manLeu1.NW_012102031v1 I 2 C 0 s colAng1.NW_012115588v1 887299 6 + 1946073 ACAGAA i colAng1.NW_012115588v1 I 2 C 0 s calJac3.chrUn_GL286373 1914441 6 - 2117846 ACAGAA i calJac3.chrUn_GL286373 I 2 C 0 s saiBol1.JH378157 8831002 6 - 16357246 ACAGAA i saiBol1.JH378157 I 2 C 0 s cebCap1.NW_016107750v1 1306713 6 - 1807191 ACAGAA i cebCap1.NW_016107750v1 I 2 C 0 s micMur3.chr7 5668433 6 + 108171978 ACAGAA i micMur3.chr7 I 88 C 0 s otoGar3.GL873526 36261162 6 - 42659167 ACAGAA i otoGar3.GL873526 I 2 C 0 s mm10.chr15 82779643 6 + 104043685 ATAGAA i mm10.chr15 I 2 I 134 s canFam3.chr10 46073922 6 - 69331447 GCAGAT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47699 6 + 1056298 GCAGCG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5040711 547 - 6317780 I e panPan2.chr22 41116456 9576 + 50109623 T a score=391651.000000 s hg38.chr22_GL383582v2_alt 52252 47 + 162811 -CGGGGTCTCA--------------------------------------------------------------------------------------------ATCCCTCC--------------TGTGCTCT-GCGTTCACCTGGACCAGTCTC s panTro5.chr22 9007533 47 - 37823149 -CGGGGTCTGA--------------------------------------------------------------------------------------------ATCCCTCC--------------TGTGCTCT-GCGTTCACCTGGACCAGTCTC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127748 47 + 4464012 -TGGGGTCTCA--------------------------------------------------------------------------------------------ATCCCTCC--------------TGTGCTCT-GCGTTCACCTGGACCAGTCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624783 47 - 115148730 -CGGGGTCTGG--------------------------------------------------------------------------------------------ATCCTTTC--------------TGTGCTCT-GCGTTCACCTGGACCAGTCTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234822 47 + 92844088 -CGGGGTCTCA--------------------------------------------------------------------------------------------ATCTCTCC--------------TGTGCTCT-GTGTTCACCTGGACCAGTCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580028 47 - 96509753 -CGGGGTCTCA--------------------------------------------------------------------------------------------ATCTCTCC--------------TGTGCTCT-GTGTTCACCTGGACCAGTCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071740 47 - 13098629 -CAGGGTCTCA--------------------------------------------------------------------------------------------ATCTCTCC--------------TGTGCTCT-GTGTTCACCTGGACCAGTCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039030 47 - 4483953 -CAGGGTCTCA--------------------------------------------------------------------------------------------ATCTCTCC--------------TGTGCTCT-GTGTTCACCTGGACCAGTCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669065 47 + 33263144 -CGGGGTCTCA--------------------------------------------------------------------------------------------ATCTCTCC--------------TGTGCTCT-GTGTTCACCTGGACCAGTCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933237 47 - 14338769 -CGGGGTCTCA--------------------------------------------------------------------------------------------ATCTCTCC--------------TGTGCCCT-GTGTTCACCTGGACCAGTCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887305 47 + 1946073 -CGGGGTCTCA--------------------------------------------------------------------------------------------ATCTCTCC--------------TGTGCTCT-GCATTCACCTGCACCAGCCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914447 47 - 2117846 -CAGGATCTTG--------------------------------------------------------------------------------------------ATTTCTCC--------------TGTGCTTT-GCCTTCTCCTGGACCAGTCTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831008 47 - 16357246 -CGGAGTCTCA--------------------------------------------------------------------------------------------ATTTCTCC--------------TGTGTTCT-GCTTTTACCTGGACCAGTCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1306719 47 - 1807191 -CAGGGTCTGG--------------------------------------------------------------------------------------------ATTCCTCC--------------TACACTCT-GCCTTCACCTGGACCAGTCTC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5668439 47 + 108171978 -CGGGGCTTGG--------------------------------------------------------------------------------------------ATCCCTCC--------------TGTGCTTT-GCATTCACCTGTACCAGTCTC i micMur3.chr7 C 0 I 436 s otoGar3.GL873526 36261168 47 - 42659167 -GGAGGTCTGG--------------------------------------------------------------------------------------------GTCTCCCA--------------CATGATCA-GCATTCACCTGTACCAGTCTC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82779783 153 + 104043685 -TGAGGTCCCGGGCAACCATAGAAATTCAGTTACTTTACTACATCACTTCCAGGAATGAAACCCAAGCACCATACTTTCCTGGCAAGCTCCTTACCCACTGCCATCTCTCTGGCTCCTGGGTACATGGGCTTA-GTGTTGATCTCAACCAGTCTT i mm10.chr15 I 134 C 0 s canFam3.chr10 46073928 40 - 69331447 --GGGGCCCTG--------------------------------------------------------------------------------------------------CC--------------TGTGCTCAGGGGCTCGCCGCCACCAGTCT- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47705 48 + 1056298 CCAGGCCCTGG--------------------------------------------------------------------------------------------GTGCTCCC--------------TGAGCTCA-GTGCCCGCCCTGGCTGGGCCC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5040711 547 - 6317780 I e panPan2.chr22 41116456 9576 + 50109623 T a score=779127.000000 s hg38.chr22_GL383582v2_alt 52299 142 + 162811 AGGCCCCAGCCATCTCCA-GGAAGACCCAGGGCCTGCCTGTCC-TTACCACTGACCTCACCAAGTCCCTCCCCAAGTGCCAGCCTCCACCCTCTCTCTCCTTGC------------CCA-GAGGAGAA----ACCTAAAATCG-AAAT------------CTCCAACGTGGAC-G s panTro5.chr22 9007580 141 - 37823149 AGGCCCCAGCCATCTCCA-GGAACACCCAGGGCCTGCCTGTCC-TTACCACTGACCTCCCCAAGTCCCTCCCCAAGTGCCAGCCTCCACCCTCTCTC--CTTGC------------CCA-GAGGAGAA----ACCTAAAATCG-AAAT------------CTCCAACATGGACAG i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3127795 141 + 4464012 AGGCCCCAGCCATCTCCA-GGAAGACCCAGGGCCTGCCTGTCC-TTACCACTGACCTCCCCAAGTCCCTCCCC-AGTGCCAGCCTCCACACTCTCTC--CTTGC------------CCA-GAGGAGAA----ACCTAAAATCGAAAAT------------CTCCAACGTGGACAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106624830 151 - 115148730 AGGCCCCAGCTGCCTCCAGGGAAGACCCAGGGTCTGCCTGTCC-TCAAAACTGATCTCCCCCAGTCCCTCCCCAAGTGCCAGCCTCCACCCTCTCTC--CTTGCCCTGGG--CTG-CCA-GAGGAGAA----ACCTAAAATCA-AAAT------------CTCCAATGTGGACAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84234869 135 + 92844088 GGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCCTGCCTGTCT-CCACCACTGA------------CCTCTCTAAGTGCCAGCCTCCACCCTCTCTC--CTTGCCCTGGG--CTG-CCA-GAAGAGAA----ACCCAAAATCG-AAAT---------------CACCATGGACA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580075 135 - 96509753 GGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCCTGCCTGTCT-CCACCACTGA------------CCTCTCCAAGTGCCAGCCTCCACCCTCTCTC--CTTGCCCTGGG--CTG-CCA-GAAGAGAA----ACCCAAAATCG-AAAT---------------CACCATAGACA- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071787 135 - 13098629 GGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCCTGCCTGTCT-CCACCACTGA------------CCTCTCCAAGTGCCAGCCTCCACCCTCTCTC--CTTGCCCTGGG--CTG-CCA-GAAGAGAA----ACCCAAAATCG-AAAT---------------CACCAGGGACA- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039077 138 - 4483953 AGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCCTGCCTGTCT-TTACCACTGA------------CCTCTCCAAGTGCCAGCCTCCACCCTCTCTC--CTTGCCATGGG--CTG-CCA-GAAGAGAA----ACCCAAAATCG-AAAT------------CTCCACCATGGACA- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669112 138 + 33263144 AGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCCTGCCTGTCT-TTACCACTGA------------CCTCTCCAAGTGCCAGCCTCCACCCTCTCTC--CTTGCCCTGGG--CTG-CCA-GAAGAGAA----ACCCAAAATCG-AAAT------------CTCTACCATGGACA- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933284 138 - 14338769 AGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGTCTGCCTGTCT-TTACCACTGA------------CCTCTCCAAGTGCCAGCCTCCACCCTCTCTC--CTTGCCCTGGG--CTG-CCA-GAAGAGAA----ACCCAAAATCG-AAAT------------CTCCACCATGGACA- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887352 150 + 1946073 AGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGTCTGCCTGTCT-TTACCACTGACCTCCCCAAGTCCCTCTCCAAGTGCCAGCCTCCACCCTCTCTC--CTTGCCCTGGG--CTG-CCA-GAAGAGAA----ACCTAAAATCG-AAAT------------CTCCAACATGGACA- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914494 150 - 2117846 AGGCCCCAGCCCTCGCCAGGGAAGACCCAGGGCCTGCCTGTCC-CCACCACTGACCTTCCCAAGTCCCTCCCCAAGTGCCAGCCTCCATGCTCTCTC--CTTACCTTGGG--CTG-ACA-GAGGAGAA----ATCTAAAATCA-AATT------------CTCCAATGTGGACA- i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8831055 148 - 16357246 AGGCCCCAGCCCACTCCA-GGAAGACCCAGGGCCTGCCTGTCC-CCACCACTGACC-TCCCAAGTCCCTCCCCAAGTGCCAGCCTCCATGTTCTCTC--CTTACCTTGGG--CTG-GCA-AAGGAGAA----ACCTAAAATCA-AATT------------CTCCAATGTGGACA- i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1306766 137 - 1807191 AGGCCCCAGCCCTCTCCAGGGAAGACCCAGCGCCTGCCTGTCC-CCACCACTGACC-------------TCCCAAGTACCAGCCTCCATGCTCTCTC--CTTACCTTGGG--CTG-GTA-GAGGAGAA----ACCTAAAATCA-AATT------------CTCTAATGTGGACA- i cebCap1.NW_016107750v1 C 0 I 1 s otoGar3.GL873526 36261215 139 - 42659167 AGATCCTAGCCTCCCCCAGGGTGGACACAAGGCCTGCATGACC-CCACCATTGA-----CCAGGCCCCTCCCAGAGTGGAAGTC-CCACACTCTCTC--CTGGCCCTGGG--CTG-ACACAAGGATAA----ACCCACAATTG-AA-----------------TATCCTGGGT-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82779936 159 + 104043685 AGTTTCCAGCCTCTTCCATGATGGATACAGGCCCTATTTGTTC-CCAACTATCA-----CCTGAGTCCTCCTT-ACTTCTATCCTTCAGGTTCTA----GTTGCCCCACA--GTGAACA-AAAGAATATTCTACCCAGAAACA-TCACAGGCATGGTTGGTTTCCATGTGGGCA- i mm10.chr15 C 0 C 0 s canFam3.chr10 46073968 125 - 69331447 -GGTCCC-GCCGCCTCCAGGGT---------GCCCGCCCCCCCGCCCCCGTTGA-----CCCGGTTCCGCCCTAAGTCC--GCCTCGATCCTCTTTC--CTGGCCCCGGGGACCC-CTG-AAGGATCA----ATCTCGCCTCT-AGAT------------CTCG----------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47753 14 + 1056298 --------------------------------------------------------------------------AGCTCCGGGCACCA--------------------------------------------------------------------------------------- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5040711 547 - 6317780 I e micMur3.chr7 5668486 436 + 108171978 I e panPan2.chr22 41116456 9576 + 50109623 T a score=1220024.000000 s hg38.chr22_GL383582v2_alt 52441 185 + 162811 GGGGTACAGAGTCCTTGGCC----TCTCC-TGGTGCCCC-----------------CTGACCCGGGCACACCTCT-CCCACGACCATGTCTGAGATGTCCCCTCCTCCTCCAGGCCCT---TCTTACAGTGGGGTCTCCTGGAA-TGTCCTTTCCCAAAC-CCATCTATGCAAATCCTGCCCTTCGGAGGCCCCAGTCCA-GCCCCGGCACCTC s panTro5.chr22 9007721 185 - 37823149 GGGGTACAGAGTCCTTGGCC----TCTCC-TGGTGCCCC-----------------CTGACCTGGGCACACCTCT-CCCACGACCATGTCTGAGATGTCCCCTCCTCCTCCAGGCCCT---TCTTACAGTGGGGTCTCCTGGAA-TGTCCTTTCCCAAAC-CCATCTATGCAAATCATTCTCTTCCGAGGCCCCAGTCCA-GCCCCGGCACCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41106880 185 + 50109623 GGGGTACAGAGTCCTTGGCC----TCTCC-TGGTGCCCC-----------------CTGACCCGGGCACACCTCT-CCCACGACCATGTCTGAGATGTCCCCTCCTCCTCCAGGCCCT---TCTTACAGTGGGGTCTCCTGGAA-TGTCCTTTCCCAAAC-CCTTCTATGCAAATCCTGCCCTTCGGAGGCCCCAGTCCA-GCCCCGGCACCTC i panPan2.chr22 T 9576 C 0 s gorGor5.CYUI01015375v1 3127936 187 + 4464012 GGGGTACAGAGTCCTTGGCC----TCTCCTTGGTGCCCC-----------------CTGACCCGGGCACACCTCTGcccacgaccatgtctgagatgtcccctcctcctccaggccct---tcttacagtggggtctcctggaa-tgtcctttcccaaac-ccatctatgcaaatcctgctcttccgaggccccagtcca-gccccggcacctc i gorGor5.CYUI01015375v1 C 0 I 1523 s nomLeu3.chr7b 106624981 188 - 115148730 GAGACACAGGGTCCTTGGGC----TCTGT-TGGTGCCCC-----------------CTGACCCGGACATACCTCT-CCCACGACCGTATCTGAGATGTCCCCTCCTCCTCCAGGCCCTTCCTCTTGCAGTGAGCTCTCCTGGAA-CGTCCTTTCCCAAAT-CCCTCTATGCAAACACTGCTTCTGGGAGGCCCCACTGCA-ACCCTGGCATCTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235004 184 + 92844088 -GGGGGCACAGTCCTTGGCC----TTTCT-TGGTGCCCC-----------------CTGGCCCGGGCACACCTCT-CCCATGACCTTGTCTGAGACTTCCCATTCTCCTCCAGGCCCTTCCTCTAGCAGTGGACTCTCTAGGAA-TGTCCTTTCCCAAAC-CCTC---TGCAAATCCTGTTCCTCGGAGGCCCTACTGCA-GCCCTGGCACTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580210 184 - 96509753 -GGGGGCACAGTCCTTGGCC----TTTCT-TGGTGCCCC-----------------CTGACCCAGGCACACCTCT-CCCATGACCTTGTCTGAGACTTCCCATTCTCCTCCAGGCCCTTCCTCTAGCAGTGGACTCTCTAGGAA-TGTCCTTTCCCAAAC-CCTC---TGCAAATCCTGTTCCTCGGAGGCCCTACTGCA-GCCCTGGCACTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7071922 184 - 13098629 -GGGGGCACAGTCCTTGGCC----TTTCT-TGGTGCCCC-----------------CTGACCCGGGCACACCTCT-CCCATGACCTTGTCTGAGACTTCCCCTTCTCCTCCAGGCCCTTCCTCTAGCAGTGGACTCTCTAGGAA-TGTCCTTTCCCAAAC-CCTC---TGCAAATCCTGTTCCTCGGAGGCCCTACTGCA-GCCCTGGCACTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039215 186 - 4483953 -GGGGGCACAGTCCTTGGCC----TTTCT-TGGTGCCCC-----------------CTGACCCAGGCATACCTCT-CCCCTCACGGTGTCTGAGATATCTCCTCCTCCTCCAGGCCCTTCCTCTAGCAGTGAGCTCTCCTGGAA-TGTCCTTTCCCAAAC-CCTTCTATGCAAA-CCCACACCTCTGAGGCCCTGCTGCA-GCCCGGGCACCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669250 184 + 33263144 -GGGGGCACAGTCCTTGGCC----TTTCT-TGGTGCCCC-----------------CTGACCAGGGCACACCTCT-CCCATGACCTTGTCTGAGACTTCCCCTCCTCCTCCAGGCCCTTCCTCTAGCAGTGGACTCTCTAGGAA-TGTCCTTTCCCAAAC-CCTC---TGCAAATCCTGTTCCTCGGAGGCCCCACTGCA-GCCCTGGCACTTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933422 184 - 14338769 -GGGGGCACAGTCCTTGGCC----TTTCT-TGGTGCCCC-----------------CTGACCCGGGCACACCTCT-CCTATGACCTTGTCTGAGATTTTCCCTCCTCCTCCAGGCCCTTCCTCTAGCAGTGGACTCTCTAGGAA-TGTCCTTTCCCAAAC-CCTC---TGCAAATCCTGTTCCTCGGAGACCCCACTGCA-GCCCTGGCACTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887502 181 + 1946073 -GGGGGCACAGTCCTTGGCC----TTTCT-TGGTGCCCC-----------------CTGACCCGGGCACACCTCT-CCCACGACCTTGTCTGAGATTTCCC---CTCCTCCAGGCCCTTCCACTAGCAGTGGACTCTCTAGGAA-TGTCCTTTCCCAAAC-CCTC---TGCAAATCCTGTTCCTCGGAGGCCCCACTGCA-GCCCTGGCACTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914645 199 - 2117846 GAGGCACAGGGTCCTTGGCC----TCTCT-TAGTGCCCCCTAACCTGGAACCC---CTGACCCACACACACCTCT-CCCACGACCCTGTCTGAGATTTCCACTCCTCCTCCAGGCCTTTCCTCTTGCAGTGGGCTCTCCTGGAA-TGTCCTTTCCCAAAC-CCCTC--TGCAAACCCTGCTCCTCGGAAGCCC-GCTGCA-GCCCGGGCATCTC i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8831204 202 - 16357246 GAGGCACAGGGTCCTTGGCC----TCTCT-TGGTGCCCCCTGACCTGGAACCCCTGCTGACCGGCGCGCACGTCT-CCCACGACCGTGTCTGAGACTTCCGCCCCTCCTCCAGGCCCTTCCTCTTGCAGTGGGCTCTCCTGGAT-TGTCTTTTCCCAAAC-CCCTCTATGCAAACCCTGCTCCCTGGAAGCCC-GCTGCA-GCCCTGGAA--TC i saiBol1.JH378157 I 1 C 0 s cebCap1.NW_016107750v1 1306904 201 - 1807191 GAGGCACAGGGTCCTTGGCC----TCTCT-TGGTGCCCCCCAATCTGGAACCC---CTGACCCGCGCCCACCTCT-CCCACGACCGTGTCTGAGATTTCCGCCCCTCCTCCAGGTCCTTCCTCTTGCAGTGGGTTTTCTTGGAT-TGTCCTTTCCCAAGC-CCCTCTATGCAAACCCTGCTCCTTGGAAGCCC-ACTGCA-GCCCGGGAATCTC i cebCap1.NW_016107750v1 I 1 C 0 s otoGar3.GL873526 36261354 176 - 42659167 -----------TTCTTGGCTCGAATATTC-CAGTGACCC-----------------------TGGGCCCACCTTT-CCCACAGTGCTGTCTGAGATTTCCC-GCTGCCTCTGTGCCTCTCCTCTTGGGGTGGCCTCTCCAGCAA-TCCCCTTTTCTCATCGTCCTGCGCGCAAACCTTCCTTCACAGAGGCCCAGCTGCAGGCCCAGGCACCTG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780095 160 + 104043685 -AAGGGCCAGGATTTCAGCT----TCTAG-AAA----CC-----------------CTGACTTTGTTCCACTTCT-CCCCTCCCATTGCTGCAGGCTTTAA---AGGCTCCACACTTCTATTTTTGTGGTTGACACTTCTAGAAGTCTCCTTTCCAAATC-CCCTGTCTACA-------TCTCTGGGAAGATGAACAGC--------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46074093 71 - 69331447 ---------------GGGGC----TC----TGGCGGCTT-----------------CCGATGGAGGCGCAAGTgc-cccgccgccccgcccgcga-----------ccccccagcccgcgcAC------------------------------------------------------------------------------------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47767 106 + 1056298 --------GGGGTCCTGGCC----CCTCC-C--TGTCCC-----------------CTGTCCC-----CAGCTCT-GCC-------------------------------------------------------TTCCCTGGGG-ACCCTTGTCCCCACC-CCCTG--CACAAAGCCCCCTCCATGGGAGACC------A-GACCCAGCA---- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5040711 547 - 6317780 I e micMur3.chr7 5668486 436 + 108171978 I a score=14600.000000 s hg38.chr22_GL383582v2_alt 52626 2 + 162811 TC s panTro5.chr22 9007906 2 - 37823149 TC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107065 2 + 50109623 TC i panPan2.chr22 C 0 C 0 s nomLeu3.chr7b 106625169 2 - 115148730 CC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235188 2 + 92844088 TC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580394 2 - 96509753 TC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072106 2 - 13098629 TC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039401 2 - 4483953 TC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669434 2 + 33263144 TC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933606 2 - 14338769 TC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887683 2 + 1946073 TC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914844 2 - 2117846 TC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831406 2 - 16357246 TT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307105 2 - 1807191 TC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36261530 2 - 42659167 CC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780255 2 + 104043685 AC i mm10.chr15 C 0 C 0 e dasNov3.JH570235 47873 0 + 1056298 C e canFam3.chr10 46074164 0 - 69331447 C e proCoq1.NW_012136747v1 5040711 547 - 6317780 I e micMur3.chr7 5668486 436 + 108171978 I e gorGor5.CYUI01015375v1 3128123 1523 + 4464012 I a score=757370.000000 s hg38.chr22_GL383582v2_alt 52628 95 + 162811 AGGAGCTCGCCCTGCAGAGACTCC-TCGGTCTCTCGCTC-CGCACCTCGCGCAGGAAGCCCGACTCCTCCTTCAGTCCCTCCTGAGCTAGGTCCAGC s panTro5.chr22 9007908 95 - 37823149 AGGAGCTCGCCCTGCAGAGACTCC-TCGGTCTCTCGCTC-CGTACCTCGCGCAGAAAGCCCGACTCCTCCTTCAGTCCCTCCTGAGCTAGGTCCAGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107067 86 + 50109623 AGGAGCTCGCCCTGCAAAGA----------CCCTTGCTC-CGCACCTCGCGCAGGAAGCCCGACTCCTCCTTCAGTCCCTCCTGAGCTAGGTCCAGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3129646 95 + 4464012 aggagctcgccctgCAGAGACCCC-TCGGTCTCTCGCTC-CACACCTCGCGCAGGAAGCCCGACTCCTCTTTCGATCCCTCCTGAGCTAGGTCCAGC i gorGor5.CYUI01015375v1 I 1523 C 0 s nomLeu3.chr7b 106625171 87 - 115148730 AGGAGCTCGCCCTGCAGAGAC---------CCCTCGCTC-CGCACCTCGCGCAGGAAGCCCGTCTCCTCCTTCAGTCCCTCCTGAGCTAGGTCCAGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235190 95 + 92844088 AGGAGCTCGCCCTGCAGAGACCCC-GGCGTCCATCGCTC-TGCACCTCGCGCAGGAAGCCTGACTCCTCCTTCAGTGCCTCATGTGTTAGGTCAAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580396 95 - 96509753 AGGAGCTCGCCCTGCAGAGACCCC-GGCGTCCATCGCTC-TGCACCTCGCGCAGGAAGCCTGACTCCTCCTTCAGTGCCTCATGTGTTAGGTCAAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072108 95 - 13098629 AGGAGCTCGCCCTGCAGAGACCCC-GGCGTCCATCGCTC-TGCACCTCGCGCAGGAAGCCTGACTCCTCCTTCAGTGCCTCATGTGTTAGGTCAAAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039403 95 - 4483953 AGGAGCTCGCCCTGCAGAGACCCT-GCGGTCCCTCGCTC-CGCACCTCACGCAGGAAGCCCGACTCCTCCTTCAATCCCTCCTGTGCTAGGTCCAGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669436 95 + 33263144 AGGAGCTCGCCCTGCAGAGACCCC-GGGGTCCATCACTC-TGCACCTCGCGCAGGAAGCCTGACTCCTCCTTCAGTGCCTCATGTGTTAAGTCAAAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933608 95 - 14338769 AGGAGCTCGCCCTGCAGAGACTCC-GGGGTCCATCGCTC-TGCACCTCACGCAATAAGCCTGACTCCTCCTTCAGTGCCTCATATGTTAGGTCAAAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887685 95 + 1946073 AAGAGCTCGCCCTGCAGAGACCCC-GTGGTCCATCGCTC-CGCACCTCGCGCAGTAAGCCTGACTCCTCCTTCAGCGCCTCATGTGAAAGCTCAAAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914846 94 - 2117846 AGGAGCTCACCCTGCAGACGCCCC--CAGTCCCTGGCTC-CGTACCTCGCGTAGTAAGCCGGACTCCTCCTTCAATCCCTCCATTGTTAGGTCCAGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831408 95 - 16357246 GGGAGCTCACCCTGCAGACGCCCC-ACAGTCCCTGGCTC-CGCACCTCGCGTAGGAGGCCGGACTCCTCTGCCAGTCCCTCCAGCGTTAGGTCCAGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307107 96 - 1807191 AGGAGCTCACCCTGCAGACGCCCCCACGGTCCCTGGCTC-CGCACCTCACGTAGGAAGCCGGACTCCTCCGCCAGTCCCTCCATTGTTAGGTCCAGC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36261532 96 - 42659167 GGGAACTCTCCCTGCACAGACCTGTGGCCTCCATCTCCC-CACACCTGGATCAGGAAGCCTGATTGCTCGGGTAGAATCTCATCCATCAAGGTCAAC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780257 87 + 104043685 -AAAAGTCACTCTGCAGACTCCCT-TGAC-------CTT-CCTACCTCAGGTATCAAGCCAATTTTCTCAATCATGTATTCTTTCAATGCTCTTAGC i mm10.chr15 C 0 C 0 s canFam3.chr10 46074164 82 - 69331447 ----GCGCTCCTCCCTGGGGCTCC----------CGCCG-CGCACCTCACGCAGGAAGCCGGAGTCCTGCTTCAGCGCCTGCTGGGTGAGCTCCAGC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47873 77 + 1056298 -------------------GCCCC-TCCACCCCCCACCCGCGCACCTCTCGGACAAAGCCCGAGTCCTCCTTCAGTGCAGCCTCCATTAGCGACATG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5040711 547 - 6317780 I e micMur3.chr7 5668486 436 + 108171978 I a score=51224.000000 s hg38.chr22_GL383582v2_alt 52723 3 + 162811 AGC s panTro5.chr22 9008003 3 - 37823149 AGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107153 3 + 50109623 AGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3129741 3 + 4464012 AGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625258 3 - 115148730 AGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235285 3 + 92844088 AGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580491 3 - 96509753 AGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072203 3 - 13098629 AGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039498 3 - 4483953 AGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669531 3 + 33263144 AGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933703 3 - 14338769 AGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887780 3 + 1946073 AGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914940 3 - 2117846 AGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831503 3 - 16357246 AGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307203 3 - 1807191 AGC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5668922 3 + 108171978 AGC i micMur3.chr7 I 436 C 0 s otoGar3.GL873526 36261628 3 - 42659167 AGC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780344 3 + 104043685 ATC i mm10.chr15 C 0 C 0 s canFam3.chr10 46074246 3 - 69331447 AGC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 47950 3 + 1056298 AGC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5040711 547 - 6317780 I a score=1476537.000000 s hg38.chr22_GL383582v2_alt 52726 100 + 162811 CTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGCAGGTGAGGGAGGCGATCACGTTGCTCACGGCTTTGTCCAAGAGGCCGTTGGGGCGAAAGG s panTro5.chr22 9008006 100 - 37823149 CTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGCAGGTGAGGGAGGCGATCACGTTGCTCACAGCTTTGTCCAAGAGGCCGTTGGGGCGAAAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107156 100 + 50109623 CTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGCAGGTGAGGGAGGCGATCACGTTGCTCACGGCTTTGTCCAGGAGGCCGTTGGGGCGAAAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3129744 100 + 4464012 CTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGCAGGTGAGGGAGGCGATCACGTTGCTCACGGCTTTGTCCAAGAGGCCGTTGGGGCGAAAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625261 100 - 115148730 CTGAGGAAGCGAGGGTCGTCCTACTTGAAGCGGCGCCCACAGGTGAGGGAGGCGATCACGTTGCTCACCGCTTTGTACAGGAGGCCGTTGGGGCGAAAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235288 100 + 92844088 CTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGTAGGTGAGGGAGGCGATCACGTTGCTCACTGCTTTATCCAGGAGGCTGTTTGGGCGAAAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580494 100 - 96509753 CTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGTAGGTGAGGGAGGCGATCACGTTGCTCACTGCTTTATCCAGGAGGCTGTTTGGGCGAAAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072206 100 - 13098629 CTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGTAGGTGAGGGAGGCGATCACGTTGCTCACTGCTTTATCCAGGAGGCTGTTTGGGCGAAAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039501 100 - 4483953 CTGAGAAAGCGAGGGTCGTCGTACTCAAAGCGGCACCCGCAGGTGAGGGAGGCAATTACGTTGCTCGCCGCTTTGTACAGGAGGCCATTGGGGCGAAAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669534 100 + 33263144 CTGAGGAAGCGAGGGTCGTCGTACTCAAAGCGGCGCCCATAGGTGAGGGAGGCTATCACGTTGCTCACTGCTTTATCCAGGAGGCTGTTGGGGCGAAAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933706 100 - 14338769 CTGAGGAAGCGAGGGTCGTCGTATTCGAAGCGGCGCCCATAGGTGAGGGAGGCGATCACGTTGCTCACTGCTTTATCCAGGAGGCTGTTTGGGCTAAAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887783 100 + 1946073 TTGAGGAAGCGAGGGTCATCGTACTCGAAGCGGCGCCCATAGGTGAGGGAGGCGATCACGTTGCACACTGCTTTATCCAGGAGGCTGTTGGGGCGAAAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1914943 100 - 2117846 CTGAGGAGGCAAGGGTCATTATACTCGAAGCGGCGCCGGCAGGTGAGGGACGCGATCACGTTGCTCACCGCTTTGTCCAGGAGGCCGTTGGGGCGAAAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831506 100 - 16357246 CTGAGGAGCCGAGGGTCGTCATACTCAAAGCGGCGTCTGCAGGTGAGGGAGGCGATCACGTTGCTCACCGCTTTGTCCAGGAGGCCGCGGGGGCGAAAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307206 100 - 1807191 CTGAGGAGGCGAGGGTCGTCATACTCAAAGCGGCGCCTGCAGGTGAGGGAGGCGATCACGTTGCTCACCGCTTTGTCCAGGAGGCCGCGGGGTGGAAAGG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5668925 100 + 108171978 CTGAGGAAGCGCTGGTCGTCGTACTCGAAGCGGCGCCCGTAGGTGAGGGACGCGATCACGTTGCCCACCGCTTTGTTCAGCAGCGCGTTGGGGCTAAAGG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5041258 100 - 6317780 CTGAGGAAGCGCTGGTCGTCGTACTCGAAGCGGCGTCCGTAGGTGAGGGACGCGATCACGTTGCCCACCGCTTTGTTCAGGAGCTCGCTGGGGCTAAAGG i proCoq1.NW_012136747v1 I 547 C 0 s otoGar3.GL873526 36261631 100 - 42659167 CGGAGGAAGCGCGGGTCGTCGTATTCGAAGCGGCGCCCATAGGTGAGCGAGGCGATCACGTTGGTCACCGCTTTGTTCAGGGATTCGGTGGGGCCAAAGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780347 100 + 104043685 TTGATGCAGTCAGGATCTTCATACTCGAAGCAATGGGCATAAACAAGAGAGGCAATCACATTGCACATGGCTTTCTCCAGGAGGGTATAAGGATTGAGGG i mm10.chr15 C 0 C 0 s canFam3.chr10 46074249 100 - 69331447 TGGAGCAGCCACTGGGCGTCGTACTCTAAGCGGCGCCCTTAGGTGAGCGACGAGATCACGTTGCCTACCGCCTTGATTCTCAGAGCGCCGGGGCCGAATG i canFam3.chr10 C 0 I 196 s dasNov3.JH570235 47953 100 + 1056298 TTGCCGAAGGTGGCGTCGTCGTACTCAAAGCGGCGCCCGTGGGTGAGGGAGGAGATCACGTTGCTCACCGCTTGGTTCAGGAGGGTGTTGGGACTAAAGG i dasNov3.JH570235 C 0 C 0 a score=16511.000000 s hg38.chr22_GL383582v2_alt 52826 1 + 162811 G s panTro5.chr22 9008106 1 - 37823149 G i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107256 1 + 50109623 G i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3129844 1 + 4464012 G i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625361 1 - 115148730 G i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235388 1 + 92844088 G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580594 1 - 96509753 G i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072306 1 - 13098629 G i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039601 1 - 4483953 G i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669634 1 + 33263144 G i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933806 1 - 14338769 G i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887883 1 + 1946073 G i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915043 1 - 2117846 G i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831606 1 - 16357246 G i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307306 1 - 1807191 G i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5669025 1 + 108171978 G i micMur3.chr7 C 0 I 30690 s proCoq1.NW_012136747v1 5041358 1 - 6317780 G i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36261731 1 - 42659167 G i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780447 1 + 104043685 G i mm10.chr15 C 0 C 0 s dasNov3.JH570235 48053 1 + 1056298 A i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46074349 196 - 69331447 I a score=156560.000000 s hg38.chr22_GL383582v2_alt 52827 11 + 162811 GCGTCCTGGGG s panTro5.chr22 9008107 11 - 37823149 GCGTCCTGGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107257 11 + 50109623 GCGTCCTGGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3129845 11 + 4464012 GCGTCCCGGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625362 11 - 115148730 CCGTCCTGGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235389 11 + 92844088 TCGTCCTGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580595 11 - 96509753 TCGTCCTGGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072307 11 - 13098629 TCGTCCTGGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039602 11 - 4483953 GCATCCTGGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669635 11 + 33263144 TCGTCCTGGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933807 11 - 14338769 TCGTCCTGGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887884 11 + 1946073 TCGTCCTGGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915044 11 - 2117846 GCGTCCTGGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831607 11 - 16357246 GCGTCCTGGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307307 11 - 1807191 GCGTCCTGGGG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5699716 11 + 108171978 CTGTGCTGGGG i micMur3.chr7 I 30690 C 0 s proCoq1.NW_012136747v1 5041359 11 - 6317780 CCGTCCTGGGG i proCoq1.NW_012136747v1 C 0 I 72 s otoGar3.GL873526 36261732 11 - 42659167 GCGTCCTGGGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780448 11 + 104043685 ACTACCTGGGT i mm10.chr15 C 0 C 0 s dasNov3.JH570235 48054 11 + 1056298 GCGTCCTGGGG i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46074349 196 - 69331447 I a score=187175.000000 s hg38.chr22_GL383582v2_alt 52838 23 + 162811 GTGGGAGATGCGGGTAAGGGG---TT s panTro5.chr22 9008118 23 - 37823149 GTGGGAGATGCGGGTAAGGGG---TC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107268 23 + 50109623 GCGGGAGATGCGGGTCAGGGg---tc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3129856 23 + 4464012 GCGGGAGATGCGGGTCAGGCG---TC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625373 23 - 115148730 GCGGGAGATTCGGTTCAAGGG---TC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235400 23 + 92844088 GCGGGAGATGCGGGTCAGGGG---TC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580606 23 - 96509753 GCGGGAGATGCGGGTCAGGGG---TC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072318 23 - 13098629 GCGGGAGATGCGGGTCAGGGG---TC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039613 23 - 4483953 GCGGGAGATGCGGGTCAGGGG---TC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669646 23 + 33263144 GCGGGAGATGCGGGTCAGGGG---TC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933818 23 - 14338769 GCGGGAGATGCGGGTCAGGGG---TC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887895 23 + 1946073 ACGGGAGATGCGGGTCAGGGG---TC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915055 23 - 2117846 GCAGAAGATGTGGAGCAGCGC---TC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831618 23 - 16357246 GCAGGAGATGCGGAGCAGGGC---TC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307318 23 - 1807191 GCAGGAGATGTGGAGCAGGGC---TC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5699727 23 + 108171978 ---CGGCATGCGGGTCAGGGAGGCTG i micMur3.chr7 C 0 C 0 s otoGar3.GL873526 36261743 23 - 42659167 ---CGGGATGCAGGTCGGGGGGGGGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780459 21 + 104043685 -GTGGAAATGCA-ATGAAAAG---TC i mm10.chr15 C 0 C 0 s dasNov3.JH570235 48065 22 + 1056298 GTGCAGGGTGCGGGTCAGGTG---G- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46074349 196 - 69331447 I e proCoq1.NW_012136747v1 5041370 72 - 6317780 I a score=76960.000000 s hg38.chr22_GL383582v2_alt 52861 13 + 162811 G-----CCTTCTCCGTCC s panTro5.chr22 9008141 13 - 37823149 G-----CCTTCCCCGTCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107291 13 + 50109623 g-----ccttccccgtcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3129879 13 + 4464012 G-----CCTTCCCCGTCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625396 13 - 115148730 T-----CCTTCCCCGTCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235423 13 + 92844088 A-----CCTTCCCCGTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580629 13 - 96509753 A-----CCTTCCCCGTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072341 13 - 13098629 A-----CCTTCCCCGTCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039636 12 - 4483953 G------CTTTCCCGTCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669669 13 + 33263144 A-----CCTTCCCCGTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933841 13 - 14338769 A-----CCTTCGCTGTCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887918 13 + 1946073 A-----CCTTCCCCGTCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915078 13 - 2117846 A-----CTTTTCCTGTTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831641 13 - 16357246 A-----CTTTTCTCGTTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307341 13 - 1807191 A-----CTTTTCCCGTTC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5699750 13 + 108171978 C-----TCTTCTCCGGcc i micMur3.chr7 C 0 I 25 s otoGar3.GL873526 36261766 11 - 42659167 G-----TC--CTTCGACC i otoGar3.GL873526 C 0 I 4 s mm10.chr15 82780480 17 + 104043685 AAAATATTGTTGATGTC- i mm10.chr15 C 0 C 0 s canFam3.chr10 46074545 13 - 69331447 G-----CCTCCTCGGTCA i canFam3.chr10 I 196 C 0 s dasNov3.JH570235 48087 6 + 1056298 ------------CCGCCC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5041370 72 - 6317780 I a score=175094.000000 s hg38.chr22_GL383582v2_alt 52874 25 + 162811 CCCG----------------CCTTCCCAGTTCCCGCTTTGT s panTro5.chr22 9008154 25 - 37823149 CCCG----------------CCTTCCCAGTTCCCGCTTTGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107304 41 + 50109623 cccgccttccccgtcccccaccttcccagttcccGCTTTGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3129892 25 + 4464012 CCCA----------------CCTTCCCAGTTCCCACTTTGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625409 25 - 115148730 CCAA----------------CCTTCCCAGTTCCCACTTTGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235436 25 + 92844088 CCCG----------------CCTTCCCAGTTCCTGCCTTGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580642 25 - 96509753 CCCG----------------CCTTCCCAGTTCCTGCCTTGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072354 25 - 13098629 CCCG----------------CCTTCCCAGTTCCTGCCTTGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039648 25 - 4483953 CCCA----------------CCTTCCCAGTTCCCGCCTTGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669682 25 + 33263144 CCCG----------------CCTTCCCAGTTCCCGCCTTGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933854 25 - 14338769 CCCA----------------CCTTCCCAGTTCCCGCCTTGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887931 25 + 1946073 CCCG----------------CCTTCCCAGTTCCCGCCTTGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915091 25 - 2117846 CCCA----------------CCTTCCCAGTTCCCGCCTTGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831654 25 - 16357246 CCCA----------------CCTTCTCAGTTCTTGCCTTGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307354 25 - 1807191 CCCA----------------CCTTCCCAGTTCCTGCCTTGC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36261781 23 - 42659167 CCCA----------------CCACCCGGGTCCTCTCCCT-- i otoGar3.GL873526 I 4 C 0 s mm10.chr15 82780497 15 + 104043685 -----------------------TCCCTGTTCCCACTT--- i mm10.chr15 C 0 C 0 s canFam3.chr10 46074558 3 - 69331447 ------------------------CCC-------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 48093 13 + 1056298 --CG----------------CATCCAC-----CCGC----- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5041370 72 - 6317780 I e micMur3.chr7 5699763 25 + 108171978 I a score=104279.000000 s hg38.chr22_GL383582v2_alt 52899 9 + 162811 GCCCTTCTG s panTro5.chr22 9008179 9 - 37823149 GCCCCTCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107345 9 + 50109623 GCCCTTCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3129917 9 + 4464012 GCCCTTCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625434 9 - 115148730 GCCCCTCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235461 9 + 92844088 GCCCCTCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580667 9 - 96509753 GCCCCTCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072379 9 - 13098629 GCCCCTCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039673 9 - 4483953 GCCCCTCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669707 9 + 33263144 GCCCCTCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933879 9 - 14338769 GCCCCTCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887956 9 + 1946073 GCCCCTCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915116 9 - 2117846 GCCCCTCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831679 9 - 16357246 GCCCCTCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307379 9 - 1807191 GTCCCTCTG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5699788 9 + 108171978 gcccctgcc i micMur3.chr7 I 25 C 0 s otoGar3.GL873526 36261804 9 - 42659167 GCCTCTGCA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780512 8 + 104043685 -GCATTCCA i mm10.chr15 C 0 I 2 s dasNov3.JH570235 48106 9 + 1056298 ACCCCTCTG i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46074561 0 - 69331447 C e proCoq1.NW_012136747v1 5041370 72 - 6317780 I a score=275480.000000 s hg38.chr22_GL383582v2_alt 52908 20 + 162811 CCCATCACCCACCGGCTTGG s panTro5.chr22 9008188 20 - 37823149 CCCATCACCCACCAGAGTGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107354 20 + 50109623 CCCATCACCCACCGGCTTCG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3129926 20 + 4464012 CCCATCAGCCACCGGAGTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625443 20 - 115148730 CCCATCACCCACCGGAGTGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235470 20 + 92844088 CCCATCACCCACCGGCTTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580676 20 - 96509753 CCCATCACCCACCGGCTTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072388 20 - 13098629 CCCATCACCCACCGGCTTGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039682 20 - 4483953 CCCATCACCCACCGGCTTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669716 20 + 33263144 CCCATCACCCACCAGCTTGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933888 20 - 14338769 CCCATCACCCACCGGCTTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887965 20 + 1946073 CCCATCACCCACCGGCTTGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915125 20 - 2117846 CCCATCACGCACCGGCGTGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831688 20 - 16357246 CCCATCACCCACCTGAGTGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307388 20 - 1807191 CCCATCACCCACCGGAGTGG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5699797 20 + 108171978 ccGGTCACTTACCAGCGTGT i micMur3.chr7 C 0 T 30688 s proCoq1.NW_012136747v1 5041442 20 - 6317780 ccCGTCACCCACCGGCGTGG i proCoq1.NW_012136747v1 I 72 C 0 s otoGar3.GL873526 36261813 20 - 42659167 CCCACCACCCACCGGCGTGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780522 20 + 104043685 CCCATCACCCACCAGCCTGG i mm10.chr15 I 2 C 0 s dasNov3.JH570235 48115 20 + 1056298 CCCGGCACTCACCTGCATGG i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46074561 0 - 69331447 C a score=2428450.000000 s hg38.chr22_GL383582v2_alt 52928 156 + 162811 TCGGCGAAGGCGGCACAAAGGCAGGCGGCCTCCTCGGTCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCATAGCGCGACAGGATCACCCCTGGGGGCGGG s panTro5.chr22 9008208 156 - 37823149 TTGGCGAAGGCGGCACAAAGGCAGGCGGCCTCCTCGGTCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCATAGCGCGCCAGGAACACCCCTGGGGGCGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107374 156 + 50109623 TCGGCGAAGGCGGCACAAAGGCAGGCGGCCTCCTCGGTCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAATTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCGTAGCGTGCCAGGATCACCCCTGGGGGCGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3129946 156 + 4464012 TCGGCGAAGGCGGCACAAAGGTAGGTGGCCTCCTCGGTCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCATAGCGTGCCAGGAACACCCCTGGGGGCGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625463 156 - 115148730 TCGGCAAAGGCGGCACAGAGGCAGGCGGCCTCCTCGGTCACCCACTGTTCCAGCGACTTCTTGCCCAGGCCCAAGTTGTGCAAGGTGGACACAGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCATAGCGCGCCAGGATCACCCCTGGGGGCGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235490 156 + 92844088 TCGGTGAAGGCAGCACAGAGGCAGGCGGCCTCCTCGGTGACCCATTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCGTAGCGCGCCAGGAACACCCCTAGGGGCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580696 156 - 96509753 TCGGTGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGGTGACCCATTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGAAACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCGTAGCGCGCCAGGAACACCCCTAGGGGCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072408 156 - 13098629 TCGGTGAAGGCAGCACAGAGGCAGGCGGCCTCCTCGGTGACCCATTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGAAACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCGTAACGCGCCAGGAACACCCCTAGGGGCAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039702 156 - 4483953 TCGGTGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGGTCACCCATTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCATAGCGCGCCAGGAACACCCCTGGGGGCAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669736 156 + 33263144 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGGTCACCCATTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGAAACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCATAGCGCGCCAGGAACACCCCTGGGGGCAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933908 156 - 14338769 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGGTCACCCATTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCGTAGCGCGCCAGGAACACCCCTGGGGGCAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 887985 156 + 1946073 TCGGTGAAGGCAGCACAGAGGCAGGCGGCCTCCTCCGTCACCCATTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCAGGCCCGTAGCGCGCCAGGAACACCCCTGGGGGCAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915145 156 - 2117846 TCTGCGAAGGCAGCACAGAGGTAGGTGGCCTCCTCGGTCACCCACTGCTCCAGAGACTTCTTGCCCAAGCCCAAGTTGCGTAAGGTGGACACGGAGAAGCGTCTCTGCTCTCGCCAGGCAGGGCCGTAGCGCGCCAGGAACAACCCTGGGGACCAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831708 156 - 16357246 TCTGCGAAAGCAGCACAGAGGCAGGCGGCCTCCTCGGTCACCCACTGCTCCAGAGACTTCTTGCCCAGGCCCAAGTTGCGTAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCAGGCGGGGCCGTAGCGCGCCAGGAACACCCCTGGAGACCAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307408 156 - 1807191 TCTGCGAAGGCAGCACAGAGGCAGGCGGCCTCCTCGGTCACCCACTGCTCCAGAGACTTCTTGCCCAGGCCCAAGTTGCGTAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCAGGCGGGGCCGTAGCGTGCCAGGAACACCCCTGGGGACCAG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5669129 156 + 108171978 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGATCACCCACAGCTCCAGCGACTTCTTGCCCAGACCGAAGAAGCGCAGAGTGGACAAGGAGAAGCGCCGCTGCTCGCGCCACGCGGGCCCGTAACGCGCCAAGATGACCCCTGGGGGCGGG i micMur3.chr7 T 30688 I 559 s proCoq1.NW_012136747v1 5041462 156 - 6317780 TCTGCGAAGGCGGCACACAGGCAGGCGGCCTCCTCGGTCACCCACAGCTCCAGCGACTTCTTGCCCAGACCGAAGAAGCGCAGAGTGGACAAGGAGAAGCGCCGCTGCTCGCGCCATGCAGGACCGTAGCGCGCCATGATCACCCCTGGGGGCGGG i proCoq1.NW_012136747v1 C 0 I 502 s otoGar3.GL873526 36261833 155 - 42659167 TCAGCGAAGGCGGCACAGAGGCAGGAGGCCTCCTCGGTCACCCACTGCTCCAGAGACTTCTTGCCCAGACCGAAGAGGCGCAGAGTGGACAAGGAGAAGCGCCGCTGCTCGCGCCACGCTGGGCCGTAACGCGCCTGGAAAATCCCTGGGAGGGG- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780542 148 + 104043685 GCAGTGAAGGCATCACAGAGGTGGCCAGCCTCCTTCGTCATTCACTGCTCCAACAATTTCTTGCCCAGGCCAAAGTTTCGCAGGGTGGACATAGAGAATCGCTTCTGCTCTTGCCATTCAGGCCCATAAGGTGCAAAGGCCAAACCTG-------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46074561 113 - 69331447 -------------------------------------------ACTGCTCCAGGGACTTCTTGCCCAGGCCGAAGTTGCGCAGGGTGGACAGCGAGAAGCGCCGCTGCTCGCGCCACGCACGCCCGTAGCGCGCCAGGAACAACCCTGggggcggg i canFam3.chr10 C 0 I 6 s dasNov3.JH570235 48135 156 + 1056298 TCGGCAAAGGCGGTGCACAGGTAGGATGCCTCCTCGGTCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCGAAGTCACGCATGGTGGACACGGAGAAGCGCCGCTGCTCACGCCACCCGGGTCCGTATTGCGCGAGGATGACGCCTGGGGGCGGG i dasNov3.JH570235 C 0 C 0 a score=505213.000000 s hg38.chr22_GL383582v2_alt 53084 87 + 162811 ACGGGCACGT--GGGCGTTGCCATG---------AAGGCCTTG--GCCCCACC-CTCCGCCACCCACTCCAACCCTGGCGCTCCACAAGGTCTCCCGCAGT s panTro5.chr22 9008364 86 - 37823149 ACGGGCACGT--GCGCGTGGCCATG---------AAAGCATTA--GCCCCACC-CTCCACCACCCACTCCAACCCTA-TGCTCCCACTGGTCTCCCGCAGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107530 87 + 50109623 ACGGACACGT--GGGCGTTGCCATG---------AAGGCCTTG--GCCCCACC-CTCCGCCACCCACTCCAACCCTGGCGCTCCACAAGGTCTCCCGCAGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130102 86 + 4464012 ACGGACACGT--GGGCTTTGCCATG---------AAGGCCTTG--GCCCCACC-CTCCGCCACCCACTCCAACCCTG-TGCTCCCCCTGGTCTCCCGCAGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625619 87 - 115148730 ACGGACACGT--GGGCGTTGCCATG---------ATGGCCTTG--GCCCCACC-CTCCGCCACCCACTCCAACCTTGGCGCTCCACAAGGTCTCCCCCAGT i nomLeu3.chr7b C 0 T 14033 s rheMac8.chr10 84235646 86 + 92844088 ACAGGCAGGT--GCGAGTGGCCATG---------AAGTCCTTG--GCCCCACC-CTCTGCCACCCACTCCAACCCAG-CGCTACCCAAGGTCTCCCGCAGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580852 86 - 96509753 ACAGGCAGGT--GCGAGTGGCCATG---------AAGTCCTTG--GCCCCACC-CTCTGCCACCCGCTCCAACCCAG-CGCTACCCAAGGTCTCCCGCAGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072564 86 - 13098629 ACAGGCAGGT--GCGAGTGGCCATG---------AAGTCCTTG--GCCCCACC-CTCTGCCACCCACTCCAACCCAG-CGCTACCCAAGGTCTCCCGCAGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039858 86 - 4483953 ACAGGCAGGT--GCGAGTGGCCATG---------AAGCTCTTG--GCCCCACC-CTCTGCCACCCACTCCAACCCAG-CGCTACCCAAGGTCTCCAGCAGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669892 86 + 33263144 ACAGGCAGGT--GCGAGTGGCCATG---------AAGTCCTTG--GCCCCACC-CTCTGCCACCCACTGCAACCCAG-CGCTACCCAAGGTCTCCCGCAGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934064 86 - 14338769 ACAGGCAGGT--GCGAGTGGCCATG---------AAGTCCTTG--GCCCCACC-CTCTGCCACCCACTCCAACCCAG-CGCTACCCAAGGTCTCCAGCAGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888141 86 + 1946073 ACAGGCAGGT--GTGAGTGGCCATG---------AAGTCCTTG--GCCCCACC-CTCTGCCACCCACTCCAACCCAG-CGCTACCCAAGGTCTTCCGCAGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915301 81 - 2117846 ATGGACACGT--GAGCATGGGCATG---------AAGGCCTTG--GCCCTG------TACCGCCCACTCCAACCCTA-CGCTCCCTTTAGTCTCCCGCACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831864 86 - 16357246 AGGGGCTTGT--GAGCATGGGCATG---------AAGGCCTTG--GCCCTGCC-CTACACCGCCCACTCCAAACTTG-CATTCCGTTTAGCCTTCCGTACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307564 86 - 1807191 AGGGACATGT--GAGCGTGGGCGTG---------AAGGCCTTG--GCCCTGCC-CTGCACCGCCTACTCCAACCTTG-CACTCCGTTTAGTCTCCCGCACT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36261988 58 - 42659167 ACGGCCGTGT--GGGCGTGGCCAGG---------GATACTT----GCCCCG-----------CCCACTCGAAGCCTC-TCCTCCA---------------- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780690 48 + 104043685 -CAGGTACATCAGTGTGTAACCATG---------GAGACCTGG-----------CTGTGCTGCCCTCTC-------------------------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46074680 91 - 69331447 gcgggc-cgt--gggcggggctccgcggcggggcggggcCGTGGGGCTCCCCC-CCCCCCCCCCCGCTCCCCACCGC-CACT-----AAATCGCGCCCACT i canFam3.chr10 I 6 C 0 s dasNov3.JH570235 48291 34 + 1056298 ----------------GCGGGCACG---------TGGGC------GCCCCACCGCCCTACTGCGC------------------------------------ i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5041618 502 - 6317780 I e micMur3.chr7 5669285 559 + 108171978 I a score=229512.000000 s hg38.chr22_GL383582v2_alt 53171 28 + 162811 CCCTAGC-CCGGTCCAGC---TGGGCACAGGG s panTro5.chr22 9008450 28 - 37823149 CCCTGGC-TCTGTCCAGC---TGGGCACAGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107617 28 + 50109623 CCCTAGC-CCGGTCCAGC---TGGGCACAGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130188 28 + 4464012 CCCCGGC-CCTGTCCAGC---TGGGCACAGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106611673 28 - 115148730 CCCTGGC-CCTGTCCAGC---TGGGCACAGGG i nomLeu3.chr7b T 14033 I 14005 s rheMac8.chr10 84235732 28 + 92844088 CCCTCGC-CTGGTCCAGC---TGGGCACAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87580938 28 - 96509753 CCCTCGC-CTGGTCCAGC---TGGGCACAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072650 28 - 13098629 CCCTCGC-CTGGTCCAGC---TGGGCACAGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039944 28 - 4483953 CCCTCGC-CTGGTCCAGC---TGGGCACAGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24669978 28 + 33263144 CCCTCGC-CTGGTCCAGC---TGGGCACAGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934150 28 - 14338769 CCCTCGC-CTGGTCCAGC---TGGGCACAGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888227 28 + 1946073 CCCTCGC-CTGGTCCAGC---TGGGCACAGCG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915382 28 - 2117846 GCCTCGC-CCCGTCCAGG---TGGGCACAGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831950 28 - 16357246 GCCTTGC-CCCGTCCAGC---TGGGCACAGGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307650 28 - 1807191 GCCTTGC-CCCGTCCAGC---TGGGCACAGGA i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36262046 25 - 42659167 TCCAACC-CTGGTGCGGCTCTTGGGT------ i otoGar3.GL873526 C 0 I 2 s canFam3.chr10 46074771 27 - 69331447 --CTGACACCCTTCCCGC---CGGGGACAGGT i canFam3.chr10 C 0 I 5 s dasNov3.JH570235 48325 19 + 1056298 CCTCAGC-CCCACCCCAC---TG--------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82780738 0 + 104043685 C e proCoq1.NW_012136747v1 5041618 502 - 6317780 I e micMur3.chr7 5669285 559 + 108171978 I a score=626439.000000 s hg38.chr22_GL383582v2_alt 53199 90 + 162811 CCCACTCTTTGCTCACCCACATTGCTC----------CCCTGCCTGGGGCGGGGTTTGGCCCCAC-CTCGTCTCTGCCCACCCTGACCACCTTTCCACTCA s panTro5.chr22 9008478 90 - 37823149 CCCACTCTTTGTGCATCCACCTTGCTC----------CCTTGGCTGGGGCAGGGCTTTGCTCCAC-CTCGTCTCTGCCCACCCTGACCGCCTTTGCACTCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107645 90 + 50109623 CCCGCTCTTTGCTCACCCACATTGCTC----------CCCTGCCTGGGGCGGGGTTTGGCCCCAC-CTCGTCTCTACCCACCCTGACCACCTTTCCACTCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130216 90 + 4464012 CCCACTCTTTGCCCACCCACCTTGCTC----------CACTGCCTGGGGCGGGGTTTGGCCCCAC-CTCGTCTCTGCCCACCCTGACCACCTTTCTACTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625706 90 - 115148730 CCCACTCTTTGCTCACCCACATTGCTT----------CCCTGCCTGGGGCAGGGCTTGGCCCCAC-CTCTTCTCTGCCCACCCTGACCACCTTTGCACTCA i nomLeu3.chr7b I 14005 C 0 s rheMac8.chr10 84235760 88 + 92844088 CCCACTC--TGCTTACCTGCCTTGCTT----------CCCTGGCTGGGGCAGGTTTTTGCCCCAC-CTCTTCTCTGCCCACCCTTACCGCCTTTCCACGCA i rheMac8.chr10 C 0 I 54 s macFas5.chr10 87580966 88 - 96509753 CCCACTC--TGCTTACCTGCCTTGCTT----------CCCTGGCTGGGGCAGGTTTTTGCCCCAC-CTCTTCTCTGCCCACCCTGACCGCCTTTCCACTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072678 88 - 13098629 CCCACTC--TGCTTACCTGCCTTGCTT----------TCCTGGCTGGGGCAGGTTTTTGCCCCAC-CTCTTCTCTGCCCACCCTGACCGCCTTTCCACTCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4039972 88 - 4483953 CCCACTC--TGCTTACCTGCCTTGCTT----------CCCTGGCTGGGGCAGATTTTTGCCCCAC-CTCTTCTCTGCCCACCCTGACCGCCTTTCCACTCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24670006 88 + 33263144 CCCACTC--TGCTTACCTGCCTTGCTT----------CCCTGGCTGGGGCAGGTTTTTGCCCCAC-CCCTTCTCCGCCCACCCTGACCGCCTTTCCACTCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934178 88 - 14338769 CCCACTC--TGCTTATCTGCCTTGCTT----------CCCTGGCTGGGGCAGGTTTTTGCCCCAC-CTCTTCTCTGCCCACCCTGACCGCCTTTCCACTCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888255 87 + 1946073 CCCACTC--TGCTTACCTGCCTTGCTT----------CCCTGGCTGGGGCAGGTTTTTGCCCCAC-CTCTTCTCTGCCCACCCTGACCGCCTTTCCACTC- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915410 99 - 2117846 TCCACTC--TGCTCATCCGTCTTGCTTGCCTGCACTCCCCTGCCTGGGGCAGGGCTTGACTCCCTACTTGGCTCTGTCTACGCTGACCGCCTTTCCACTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8831978 99 - 16357246 TCCGCTC--TGCTCATCCACCTTGCTCGCCTGCACTCCCCTGCCTGGGGCAGTGCTTGACTCCATACTTGGCTCTGCCTACCCTGACCGCCTTTCCACTCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307678 99 - 1807191 TCTGCTC--TGCTTACCCACCTTGCTTGCCTGCACTCCCCTGCATGGGGCAGGGCTTGACTCCCTACTTGGCTCTGCCTACCCTGACCGCCTTTCCACTCA i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36262073 82 - 42659167 CGCACTT--TAGCCGCTTGCTGTCTGT----------CCTCTGCTTGGGCG----TTGGCCCCAC-C-CTCCTCTGCC-ACCCTAACTACCTGTCTACTCA i otoGar3.GL873526 I 2 C 0 s mm10.chr15 82780738 65 + 104043685 CCCACTT------------CATTTCTC----------TTCTCCTCTGGGCTCAGT---GTCCCTC-AAAACCTCAATCAACCCTTCCTACC---------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46074803 74 - 69331447 CCCGCGT--TGCTCGCCGGC---GCTT----------CTCGGCC---GGCAGGTGCTGGCCCCCG--------CCGCCCGCCTCGACCCCGTCGCAGTCC- i canFam3.chr10 I 5 C 0 s dasNov3.JH570235 48344 54 + 1056298 -----------------CACGCTGCTT----------CTTGCTCTGGGA--------GACCCCAA------CTCTGCCCATCTTGACCGCCCCCC------ i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5041618 502 - 6317780 I e micMur3.chr7 5669285 559 + 108171978 I a score=162422.000000 s hg38.chr22_GL383582v2_alt 53289 37 + 162811 AGGAAGATC-CCGC-----CCGTCC----------CGCCCACACTGAGCCCGC s panTro5.chr22 9008568 42 - 37823149 GTGAAGATC-CCGCGGGCCCCGCGC----------CACCCACACTGAGCTTAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107735 37 + 50109623 GGGAAGATC-CCGC-----CCGTCC----------CGCCCACACTGAGCCCGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130306 37 + 4464012 GGGAAGATC-CCGC-----CCGTCC----------CGCCCACACTGAGCCCGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625796 37 - 115148730 GGGACGATC-CCGC-----CCACCC----------CGCCCACGCTGAGCCCGC i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87581054 42 - 96509753 GGGAAGATC-CCGCATGCCCCGCCC----------CACCTACACTGAGCCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072766 42 - 13098629 GGGAAGATC-CCGCATGCCCCGCCC----------CACCTACACTGAGCCCAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4040060 42 - 4483953 GGGAAGATC-CCGCATGCCACGCCC----------CACCTACACTGAGCCCAC i cerAty1.NW_011999588v1 C 0 I 53 s chlSab2.chr19 24670094 42 + 33263144 GGGAAGATC-CCGCATGCCCCGCCC----------CACCTACGCTGAACCCAC i chlSab2.chr19 C 0 I 53 s manLeu1.NW_012102031v1 13934266 42 - 14338769 GGGAAGATC-CCGCATGCCCCCTCC----------CACCTACACTGAGCCCAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888342 41 + 1946073 -GGAAGATC-CCGCATGCCCCGCTC----------CACCTACACTGAGCCCAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915509 42 - 2117846 GGGAAGATC-CCGCCGGACCGGCCC----------CACTCACACTGAGCCCGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8832077 52 - 16357246 AGGACGATc-ccgccggcccggcccctcccccccgcccccgcACTGAGCCTCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307777 42 - 1807191 GGGAAGATC-CCGCCGGCCTGGCCC----------CACCCGCACTGAGCCCGC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36262155 15 - 42659167 ----------------------------------GGGACTACGCGGGGC---- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780803 14 + 104043685 AAGAATATCTCTAC--------------------------------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46074877 26 - 69331447 GGGAGAGTC-CTGG-----CGTCCC----------GGCTCGC----------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 48398 33 + 1056298 ----ACACC-CCCA-----CAGACA----------AGCCCTCCCAGGGCCCAC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5041618 502 - 6317780 I e micMur3.chr7 5669285 559 + 108171978 I e rheMac8.chr10 84235848 54 + 92844088 I a score=21496.000000 s hg38.chr22_GL383582v2_alt 53326 6 + 162811 AGCATA s panTro5.chr22 9008610 6 - 37823149 AGCACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107772 6 + 50109623 AGCATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130343 6 + 4464012 AGCATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625833 6 - 115148730 AGCATA i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87581096 5 - 96509753 -GCACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072808 5 - 13098629 -GCACA i macNem1.NW_012012688v1 C 0 C 0 s manLeu1.NW_012102031v1 13934308 5 - 14338769 -GCACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888383 5 + 1946073 -GCACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915551 6 - 2117846 AGGACA i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8832129 6 - 16357246 AGTACA i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1307819 6 - 1807191 AGTACA i cebCap1.NW_016107750v1 C 0 I 34 s canFam3.chr10 46074903 4 - 69331447 --CCCA i canFam3.chr10 C 0 I 2 s dasNov3.JH570235 48431 4 + 1056298 --TCCA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82780817 0 + 104043685 C e otoGar3.GL873526 36262170 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 502 - 6317780 I e micMur3.chr7 5669285 559 + 108171978 I e chlSab2.chr19 24670136 53 + 33263144 I e cerAty1.NW_011999588v1 4040102 53 - 4483953 I e rheMac8.chr10 84235848 54 + 92844088 I a score=1070.000000 s hg38.chr22_GL383582v2_alt 53332 2 + 162811 GG s panTro5.chr22 9008616 2 - 37823149 GG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107778 2 + 50109623 GG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130349 2 + 4464012 GG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625839 2 - 115148730 GG i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87581101 2 - 96509753 GG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072813 2 - 13098629 GG i macNem1.NW_012012688v1 C 0 I 43 s manLeu1.NW_012102031v1 13934313 2 - 14338769 GG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888388 2 + 1946073 GG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915558 1 - 2117846 G- i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8832136 1 - 16357246 G- i saiBol1.JH378157 I 1 C 0 s canFam3.chr10 46074909 1 - 69331447 -G i canFam3.chr10 I 2 I 1 e mm10.chr15 82780817 0 + 104043685 C e dasNov3.JH570235 48435 0 + 1056298 C e otoGar3.GL873526 36262170 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 502 - 6317780 I e micMur3.chr7 5669285 559 + 108171978 I e cebCap1.NW_016107750v1 1307825 34 - 1807191 I e chlSab2.chr19 24670136 53 + 33263144 I e cerAty1.NW_011999588v1 4040102 53 - 4483953 I e rheMac8.chr10 84235848 54 + 92844088 I a score=39829.000000 s hg38.chr22_GL383582v2_alt 53334 24 + 162811 CGCGGTCCCCGCCACCGCCACTTC s panTro5.chr22 9008618 22 - 37823149 TGCGGTCCCCGCC--CCCCACTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107780 24 + 50109623 CGCGGTCCCCGCCACCGCCACTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130351 24 + 4464012 CGCGGTCCCCGCCACCGCCACTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625841 24 - 115148730 CGTGGTCCCTGCCACCGCCACTTC i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87581103 22 - 96509753 CGCTGACGCCGTC--CCCCTCGTC i macFas5.chr10 C 0 I 21 s manLeu1.NW_012102031v1 13934315 22 - 14338769 CGCTGACGCCGTC--CCCCTCTTC i manLeu1.NW_012102031v1 C 0 I 24 s colAng1.NW_012115588v1 888390 22 + 1946073 CGGTGTCCCCGTC--CCCCACTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915559 24 - 2117846 CGCAGCCCCCCAGACACCCACTTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8832137 24 - 16357246 CGCAGCCCCCCAGACACCCACTTC i saiBol1.JH378157 C 0 C 0 s canFam3.chr10 46074911 20 - 69331447 CTGGGTCCTCATTCCCGCCC---- i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 48435 24 + 1056298 CCCAGTCCCCGCAGGACCCGCTGT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82780817 0 + 104043685 C e otoGar3.GL873526 36262170 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 502 - 6317780 I e micMur3.chr7 5669285 559 + 108171978 I e cebCap1.NW_016107750v1 1307825 34 - 1807191 I e chlSab2.chr19 24670136 53 + 33263144 I e cerAty1.NW_011999588v1 4040102 53 - 4483953 I e macNem1.NW_012012688v1 7072815 43 - 13098629 I e rheMac8.chr10 84235848 54 + 92844088 I a score=-15961.000000 s hg38.chr22_GL383582v2_alt 53358 3 + 162811 GA--C s panTro5.chr22 9008640 3 - 37823149 GA--C i panTro5.chr22 C 0 I 21 s panPan2.chr22 41107804 3 + 50109623 GA--C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130375 3 + 4464012 GA--C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625865 3 - 115148730 GA--C i nomLeu3.chr7b C 0 I 21 s macFas5.chr10 87581146 2 - 96509753 AA--- i macFas5.chr10 I 21 I 1 s macNem1.NW_012012688v1 7072858 2 - 13098629 AA--- i macNem1.NW_012012688v1 I 43 I 1 s colAng1.NW_012115588v1 888412 3 + 1946073 GAC-- i colAng1.NW_012115588v1 C 0 I 21 s calJac3.chrUn_GL286373 1915583 3 - 2117846 AA--C i calJac3.chrUn_GL286373 C 0 I 8 s saiBol1.JH378157 8832161 3 - 16357246 AG--C i saiBol1.JH378157 C 0 I 8 s canFam3.chr10 46074931 3 - 69331447 --GCC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 48459 2 + 1056298 ---GC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82780817 0 + 104043685 C e otoGar3.GL873526 36262170 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 502 - 6317780 I e micMur3.chr7 5669285 559 + 108171978 I e cebCap1.NW_016107750v1 1307825 34 - 1807191 I e manLeu1.NW_012102031v1 13934337 24 - 14338769 I e chlSab2.chr19 24670136 53 + 33263144 I e cerAty1.NW_011999588v1 4040102 53 - 4483953 I e rheMac8.chr10 84235848 54 + 92844088 I a score=17235.000000 s hg38.chr22_GL383582v2_alt 53361 4 + 162811 GCAT s panTro5.chr22 9008664 4 - 37823149 GCGC i panTro5.chr22 I 21 C 0 s panPan2.chr22 41107807 3 + 50109623 G-GT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130378 4 + 4464012 GCGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625889 4 - 115148730 GCGT i nomLeu3.chr7b I 21 C 0 s macFas5.chr10 87581149 4 - 96509753 GCGC i macFas5.chr10 I 1 C 0 s macNem1.NW_012012688v1 7072861 4 - 13098629 GCGC i macNem1.NW_012012688v1 I 1 C 0 s cerAty1.NW_011999588v1 4040155 4 - 4483953 GCGC i cerAty1.NW_011999588v1 I 53 C 0 s chlSab2.chr19 24670189 4 + 33263144 GCGC i chlSab2.chr19 I 53 C 0 s manLeu1.NW_012102031v1 13934361 4 - 14338769 GCGT i manLeu1.NW_012102031v1 I 24 C 0 s colAng1.NW_012115588v1 888436 4 + 1946073 GCGC i colAng1.NW_012115588v1 I 21 C 0 s calJac3.chrUn_GL286373 1915594 4 - 2117846 GCTC i calJac3.chrUn_GL286373 I 8 C 0 s saiBol1.JH378157 8832172 4 - 16357246 GCGC i saiBol1.JH378157 I 8 C 0 s cebCap1.NW_016107750v1 1307859 4 - 1807191 GCGC i cebCap1.NW_016107750v1 I 34 C 0 s canFam3.chr10 46074934 4 - 69331447 CCGA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 48461 4 + 1056298 ACTC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82780817 0 + 104043685 C e otoGar3.GL873526 36262170 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 502 - 6317780 I e micMur3.chr7 5669285 559 + 108171978 I e rheMac8.chr10 84235848 54 + 92844088 I a score=1791359.000000 s hg38.chr22_GL383582v2_alt 53365 274 + 162811 CAGCCTCGCCCACCGGGCT-TCTGGCGGGTCTGGGCAGTAGCCCCGCCCCCTC---------CCAGCCC------ACAGACTCGCACCTCCCCCGTGCAGGTG-GTTTCCTGGCCCACTGTCCTCAGCCCACTCGCTGGCCTTTATCTCTGTTTCACGTCCAGGACCCCACGCCC-TGTCGGCGCTGCTTGGGCTACGGTCA----CTGTCCACCCGGGGCCCACGGAAACGCGGTCTCTGTCCCC--CACCGCCGCTTGCCTTGGGAACGCGGCCCGAAGCCCAGGACCTGGTAGAT s panTro5.chr22 9008668 274 - 37823149 CAGCCTCACCCATTGGGCT-CCTGCCAGGTCTCGGCAGTGGCCCCGCCCACTCGTCACAAGCCCCGCCCTCGTGCCCACGCTCACACCTCCCTAGTGCAGGTG-GTTTCTTGGCCCGCTGTCC-----CCACTCGCTGGCCT--------GTTTCATGTCCACGACCCCGCGCCC-TCTCTGCCCAGCTCGGACTACGGTCA----TCACCCACCCGGGTCCCACGGAAAT-CTGTCTCTGTCCCC---ACCGCTGCTTGCCTTGGGAACGCGGCCCAAAACCCAGGATCTGGGTGAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41107810 273 + 50109623 CAGCCTCGCCCACCGGGCT-TCTGGCGGGTCTGGGCAGTAGCCCCGCCCCCTC---------CCAGCCC------ACAGACTCGCACCTCCCCCGTGCAGGTG-GTTTCCTGGCCCACTGTCCTCAGCCCACTCGCTGGCCTTTATCTCTGTTTCACGTCCAGGACCCCACGCCC-TGTCGGCGCTGCTTGGGCTACGGTCA----CTGTCCACCCGGGGCCCACGGAAACGCGGTCTCTGTCTCC---ACCGCTGCTTGCCTTGGGAACGCGGCCCGAAGCCCAGGACCTGGTAGAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130382 274 + 4464012 CAGCCTCGCCCACCGGGCT-TCTGGCGGGTCTGGGCAGTAGCCCCGCCCCCTC---------CCAGCCC------ACAGACTCGCACCTCCCCCGTGCAGGTG-GTTTCCTGGCCCACTGTTCTCAGCCCACTCGCTGGCCTTTATCTCTGTTTCACGTCCAGGACCCCACGCCC-TGTCGGCGCTGCTTGGGCTACGGTCA----CTGTCCACCCGGGGCCCACGGAAACGCGGTCTCTGTCCCC--CACCGCCGCTTGCCTTGGGAACGCGGCCCGAAGCCCAGGACCTGGTAGAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106625893 273 - 115148730 CAGCCTCGCCCACCAGGCT-TCTGGCGGGTCTGGGCAGTAGCCCTGCCCCCTC---------CCAGCCC------ACAGACTCGCACCTCCCCAGTGCAGGTG-GTTTCCTGGCCCACTGTCCTCAGCCCACTCCCTGGCCTTTATCCCTGTTTCACGTCCAGGACCCCACGCCC-TGTTGGCGCAGCTTGGACTACGGTCA----CTGTCCACCCGGGGCCCACGGAAACACGGTCTCTGTCCCC---ATCGCCGCTTGCCTTGGGAACGCGGCCCGAAGCCCGGGACCTGGTAGAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84235902 279 + 92844088 CATCCTCACCCACCTGGCT-CCTGGCGGGTCTGGGCAGTGGCCCCGCCCACTCGTCACAAGCCCCGCCCTCATCCCCAGGCTCACATTTCCCCAGTGCAGGTG-GTTTCCTGGCCCGCTGTCC-----CCACTGGCTGGCCTTT----ATGTTTCACATCCACGACCCCGCGCCC-TCTCCGCCCAGCTCGGACTTCGGTCA----CCGCCCACCCAGGGCCCACGGAAATGAGGTCTCTGTGCCC---ACCGCCACTTGCCTTGGGAGCGCGGCCCAACACCCAGGACCTGGTTGAT i rheMac8.chr10 I 54 C 0 s macFas5.chr10 87581153 279 - 96509753 CATCCTCACCCACCTGGCT-CCTGGCGGGTCTGGGCAGTGGCCCCGCCCACTCGTCACAAGCCCCGCCCTCATCCCCAGGCTCACACCTCCCCAGTGCAGGTG-GTTTCCTGGCCCGCTGTCC-----CCACTGGCTGGCCTTT----CTGTTTCACATCCACGACCCCGCGCCC-TCTCCGCCCAGCTCGGACTTCGGTCA----CCGCCCACCCAGGGCCCACGGAAATGAGGTCTCTGTGCCC---ACCGCCACTTGCCTTGGGAGCGCGGCCCGATGCCCAGGACCTGGTAGAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7072865 279 - 13098629 CATCCTCACCCACCTGGCT-CCTGGCGGGTCTGGGCAGTGGCCCCGCCCACTCGTCACAAGCCCCGCCCTCATCCCCAGGCTCACACCTCCCCAGTGCAGGTG-GTTTCCTGGCCCGCTGTCC-----CCACTGGCTGGCCTTT----CTGTTTCACATCCACGACCCCGCGCCC-TCTCCGCCCAGCTCGGACTTCGGTCA----CCGCCCACCCAGGGCCCACGGAAATGAGGTCTCTGTGCCC---ACCGCCACTTGCCTTGGGAGCGCGGCCCAAAACCCAGGACCTGGTTGAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4040159 279 - 4483953 CATCCTCACCCACCCGGCT-CCTGGCGGGTCTGGGCAGCGGCCCCGCCCACTCGTCACAAGCCCCGACCTCATCCCCAGGCTCACACCTCCCCAGTGCAGGTG-GTTTCCTGGCCCGCTGTCC-----CCACTGGCTGGCCTTT----CTGGTTCACATCCACGACCCCGCGCCC-TCTCTGCCCAGCTCGGACTTCGGTCA----CCACTCACCCAGGGCCCACGGAAATGAGGTCTCTGTGCCC---ACCGCCACTTGCCTTGGGAGCGCGGCCCAAAACCCAGGACCTGGTTGAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24670193 279 + 33263144 CATCCTCACCCACCCGGCT-CCTGGCGGGTCTGGGCAGTGGCCCCGCCCACTCGTCGCAAGCCCCGCCCTCATCCCTAGGCTCACACCTCCCCAGTGCAGGTG-GTTTCCTGGCCCGCTGTCC-----CCACTGGCTGGCCTTT----CTGTTTCACATCCACGACCCCGCGCCC-TCTCCGCCCAGCTCGGACTTCGGTCA----CCGCCCACCCAGGGCCCACGGAAATGCGGTCTCTGTGCCC---ACTGCCACTTGCCTTGGGAGCGCGGCCCAAAACCCAGGACCTGGTTGAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934365 283 - 14338769 CATCCTCACCCACCCGGCT-CCTGGCGGGTCTGGGCAGTGGCCCCGCCCACTCGTCACAAGCCCCGACCTCATCCCCAGGCTCACACCTCCCCAGTGCAGGTG-GTTTCCTGGCCCGCTGGCC-----CCACTGGCTGGCCTTT----CTGTTTCACATCCACGACCCCGCGCCC-TCTCCGCCCAGCTCGGACTTCGGTCACCGCCCGCCCACCCAGGGCCCACGGAAATGAGGTCTCTGTGCCC---ACCGCCACTTGCCTTGGGAGCGTGGCCCAAAACCCAGGACCTGGTTGAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888440 277 + 1946073 CATCTTCAGCCACCCGGCA-CCTGGCGTGTCTGGGCAGTGGCCCCGCCCACTCGTCACGAGCCCCGCCCTCATCCCCAGGCTCACACCTCCCCAGTGCAGGTG-GTTTCCTGGCCCGCTGTCC-----GCACTGGCTGGACTT------TGTTTCACGTCCACGACCCCGCGCCC-TCTGCGCCCAGCTCGGACTTCGGTCA----CCGCCCACCCGGGGCCCACGGAAATGAGGTCTCTATGCCC---ACCACCACTTGCCTTGGGAGCGCGGCCCAAAACCCAGGACCTGGGTGAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915598 256 - 2117846 CGGCCCCGCCCACCCAGCT-CCAGGTGGTTCTGGGCAGTGGCCCCGCCCACAC--------------------------TCTCGTACCTCCCCAGATCAGGTG-GTGTC----CCCGCTGTCCGCAGCCCACTCGCTGGCCTTT--CTGTGTTTCACATTCACAACCCCAAGCCC-TCTCGGCCCAGCTGGGGCTACGGTTA----CCGCCCACCCGAGTCCCGCGGAAACACAGTCTGCGTCCCC---ACCACCGCTTGCCTTGGGAGTGGGGCCCGAAGCCCAGCATCTCGGTGAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8832176 257 - 16357246 CAGCCCCGCCCATCCGGCTCCCGGGCAGTACTGGGCAGTGGCCCCGCCCACAC--------------------------GCTCGCACCTCCCCAGATCAGGTG-GTGTC----CCGGCTGTCCCCAGCCCACTCGCTGGCCTTT--CTGTGTTTCACATCCACAGCTCCGAGCCG-TCTCGGCCCAGCTGGGCCTATAGTTA----CCGCCCACCCGAGTCCCGTGGAAACGTAATCTGCGTCTCC---ACCGCCACTTGCCTTGGGAGCGCGGCCCGTAGCCCAGGACCTGGTAGAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1307863 255 - 1807191 CAGCCCCGCCCACCTGGCT-CCAGGCGGTTCT-GGCAGTGGCCCCGCCCACAC--------------------------GCTCGCACCTCCCCAGATCAGGTG-GTGTC----CCCGCTGTCCCCAGCCCACTCGCTGGCCTTT--CTGTGTTTCACATCCACAACCCCGAGCCC-TCTCGGCCCAGCTCGGCCTACAGTTA----CCACCCACCCAAGTCCCGTGGAAACGCAGTCTGCGTCCCC---ACCGCCACTTGCCTTGGGAGCGCGGCCCGTAGCCCAGGACCTGGTAGAT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36262170 214 - 42659167 --GGCTCCGCCAGCGGCCT----------TCTGAGCTGCGCCCCTTCCCGCCC---------------------------------------------ACGTG-GTCTCCTC-CTCTCTACCCCCAGCCCATTCCCTGTCCTTC-------------CTCTGGGCCTCAGGGCCCGTTTCAGCCGCGCACTGGGTCCAGTCA----GGTCT---CCAGGACCTGCCGTGACACCATCT--GTCCCC---GCTGTCACTTGCCTTCGGAGTGAGGTCCAAAGCCCAGGTACTCAAGGAT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82780817 196 + 104043685 ------CACCCTCCAGGAT-GCTAAAGGG----------------------------------------------------------CTCCACAATG-----G-ATTTCAGGGA--------------CTTTTTGTTGG---------ATGTCTTAAATCCATTAACACCTGCAT-TG--AGCCCTGATCTTCCATTGCTCA----CTGTCC-CCCTTGTGTGACTCTGATGCCATCTCTGCCTCCCACACTGATTTGTACCTTTAGCTTTTTGTCCATTGCTTGGTGGAAGAAAGAT i mm10.chr15 C 0 C 0 s canFam3.chr10 46074938 203 - 69331447 CGGCCTCTCCC-----GCT-CCCAAGGGCCCTGGG-------CCCGCCCTCAT----------------------------CCGCCCCTCC---------GAG-GTT---------------------------GCTGCCTCTT--CCCTGCCGCGCG-CCACCATCCTGC-CCC-GCGTGGCCCCGCGGGGCTT---GTCG----CTGCTGGCCCAT-CCCCGCCAGGCCCCGGGCTGCGCCCCT----CCCCCGCTTGCCTTGGGATTCTGGCCCCAAACCCAGGTGGTCATAGAT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 48465 148 + 1056298 -------------------------------------------------------------------------------------------------CAGCTGCGTCTCCCCGCCTGCG-----------------TGGCCCTT--------------------GTCCTGCGCCC-CTT-------GCCATGTCACTGGTCA-CTTCCGCCTGGCTATGGCTTGCAG----GTGGGCTCTGCCCCC---ACCAGCGCTCACCTTGTGCCCGGGGCCCAAAGCCCAGGTGCTCGTAGAC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5041618 502 - 6317780 I e micMur3.chr7 5669285 559 + 108171978 I a score=2256227.000000 s hg38.chr22_GL383582v2_alt 53639 138 + 162811 GGGCGCAGGCGGGCGGTCGGCCGTGTCCTCGCCGCGGGTCACCATCGCCTCGCGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAACTG s panTro5.chr22 9008942 138 - 37823149 GGGCACAGGGGGGCGGTCGGCGGTGTCCTCGCCGTGGGTCACCAGCGCCTCGCGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAAGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAACTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41108083 138 + 50109623 GGGCGCAGGCGGGCGGTCGGCGGTGTCCTCGCCGCGGGTCACCATCGCCTCGCGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAACTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130656 138 + 4464012 GGGCGCAGGCGGGCGGTCGGCGGTGTCCTCGCCGCGGGTCACTGTCGCCTCGCGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGTAGGCTGAACACGTCCCCGAAGCGGCGCTGCAACTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106626166 138 - 115148730 GGGCGCAGGTGGGCGGTCAGCGGTGTCCTCGCCGCGGGTCACCATCGCCTCACGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGTGCCGCAGCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84236181 138 + 92844088 GGGCACAGGCGGGCGGTCGGCTGTGTCCTCGCCGCAGGTCACCAGCGCCTCACGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAACTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87581432 138 - 96509753 GGGCACAGGCGGGCGGTCGGCAGTGTCCTCGCCGCAGGTCACCAGCGCCTCGCGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAACTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7073144 138 - 13098629 GGGCACAGGCGGGCGGTCGGCTGTGTCCTCGCCGCAGGTCACCAGAGCCTCACGCACGGCCGCCAGCCCATTGAGCACGACCACCGGTGTCCAGGCCAGCTGCAGGCTGAACACGTTCCCGAAGCGGCGCCGCAACTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4040438 138 - 4483953 GGGCACAGGCGGGCGGTCGGCTGTGTCCTCGCCGTAGGTCACCAGCGCCTCGCGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAACTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24670472 138 + 33263144 GGGCACAGGCGGGCGGTCGGCTGTGTCCTCGCCGTAGGTCACCAGCGCCTCGCGCACGGCCGCCAACCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAACTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934648 138 - 14338769 GGGCACAGGTGGGCGGTCGGCTGTGTCCTCGCCGTAGGTCACCAGCGCCTCGCGCACGGCCGCCAGCCCGTTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAACTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888717 138 + 1946073 GGGCACAGGCGGGCGGTCGGCTGTGTCCTCGCCGTAGGTCACCAGCGCCTCGCGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAACTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915854 138 - 2117846 GGGCACAGGCGGCCGATCGGCGGTGTCCTCACCGCGGGTCACCAGTGCCTCACGCACGGCCTCCAGCCCGTTGAGCACGACGACCGGTGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCAAAGCGGCGCCTCAGCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8832433 138 - 16357246 GGGCACAGGCGGCCGATCGACGGTGTCCTCGCCGCGGGTCACCAGCGCCTCACGCACGGCCTCCAGCCCGTTGAGCACGACCACCGGTGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCAAAGCGGCGCCGCAGCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308118 138 - 1807191 GGGCACAGGCGGCCGATCGGCGGTGTCCTCGCCGCGGGTCACCAGCGCCTCACGCACGGCCTCCAGCCCGTTGAGTACGACCACCGGTGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCAAAGCGGCGCCGCAGCTG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5669844 138 + 108171978 GGGCGAAGGCGGCCGGTCGGCAGTGTCCTCGTTGTGCTTCACCAGCGCCTCGCGCACGGCCTCCAGCCCGTTGAGCACGACCGCCGGCGTCCAGGCCAGCTGCAGGCTGTACACGTCCCCGAAGCGGCGCCGCAGCTG i micMur3.chr7 I 559 I 4352 s proCoq1.NW_012136747v1 5042120 138 - 6317780 GGGCGAAGGCGGCCGGTCCGCAGTGTCCTCGTTGTGCTTCACTAGCGCCTCGCGCATGGCCTCCAGCCCGTTGAGCACGACCGCCGGCCTCGAGGCCAGCTGCAGGCTATACACGTTCCCGAAGCGGCGCCGCAGCTG i proCoq1.NW_012136747v1 I 502 C 0 s otoGar3.GL873526 36262384 138 - 42659167 GCGCGTAGGCGGACGATCCGCGGTGTCTTCGTTGTGCTTCACCAGCGCCTCGCGTACGGCCACCAGCCCGTTGAGCACGACCACCGGTGTCCAGCCCAGCTGCAGGCTGTACACGTCCCCGAAGCGGCGCTGCAGCTG i otoGar3.GL873526 C 0 I 2 s mm10.chr15 82781013 138 + 104043685 GGGCATTTCAGGGCGGTCAGCAGTGTTTTCTCCACAGGTCACCAGTACTTCCTGTACTGCCATCAGTCTGTTGACAATGACCATGGGATTCCTGCCCAGCTTCAGGCTGAACACGTCACCATAGCGGTTTTGAAGCTG i mm10.chr15 C 0 C 0 s canFam3.chr10 46075141 138 - 69331447 CGGCATAGGTGGGCGGTCGGCAGTGTCCTCGCTGCGGTGCACCAGGGCCTCGCGCACCGCCTCCAGGCCGTTGAGCACGACCACCGGCGTCCAGGCCAGCTCCAGGCTGAACACGTTTCCGAAGCGGCCTTGCAGCTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 48613 138 + 1056298 GGGAAAGGGCGGCCGGTCCGCGGTGTCCTCGCCCCGCTGCAGCAGCGCCTCGCGCACGGCCGCCAGCCCGCTGATCACGACCGTGGGCGTCCAGGCCAGCTGCAGGCCGAACACGTCCCCGAAGCGGCGCCGCAGCTG i dasNov3.JH570235 C 0 C 0 a score=183667.000000 s hg38.chr22_GL383582v2_alt 53777 16 + 162811 CAGAGGGAGGGTCAGG s panTro5.chr22 9009080 16 - 37823149 CAGAGGGAGGGTCAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41108221 16 + 50109623 CAGAGGGAGGGTCAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130794 16 + 4464012 CAGAGGGAGGGTCAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106626304 16 - 115148730 CAGAGGGAGGGTCAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84236319 16 + 92844088 CAGAGGGAGGGTCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87581570 16 - 96509753 CAGAGGGAGGGTCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7073282 16 - 13098629 CAGAGGGAGGGTCAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4040576 16 - 4483953 CAGAGGGAGGGTCAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24670610 16 + 33263144 CAGAGGGAGGGTCAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934786 16 - 14338769 CAGAGGGAGGGTCAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888855 16 + 1946073 CAGAGGGAGGGTCAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1915992 16 - 2117846 CAAAGGGAGGGTCAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8832571 10 - 16357246 CAAAGGG------AGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308256 16 - 1807191 CAAAGGGAGGGTCAGG i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5042258 16 - 6317780 TAGGAGGAGGGTCAGG i proCoq1.NW_012136747v1 C 0 T 2016 s otoGar3.GL873526 36262524 16 - 42659167 GCGGGGGAGGATCAGG i otoGar3.GL873526 I 2 C 0 s mm10.chr15 82781151 15 + 104043685 -AAGTAGAGGAACAGA i mm10.chr15 C 0 I 23 s canFam3.chr10 46075279 16 - 69331447 CAGGCCACGGGTGGAG i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 48751 16 + 1056298 CAGGCCCAGGGCGAGG i dasNov3.JH570235 C 0 I 1 e micMur3.chr7 5669982 4352 + 108171978 I a score=181631.000000 s hg38.chr22_GL383582v2_alt 53793 24 + 162811 GCCTCT-----TGTCAAGCCAGGAT-CAC-----C s panTro5.chr22 9009096 24 - 37823149 GCCTCT-----TGTCAAGCCAGGAT-CAC-----C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41108237 23 + 50109623 GCCTC------TGTCAAGCCAGGAT-CCC-----C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130810 23 + 4464012 GCCTC------TGTCAAGCGAGGAT-CCC-----C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106626320 24 - 115148730 GCTTC------CGTCAAGCCAGAGTCCCC-----C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84236335 23 + 92844088 GCCTC------CGTCAAGCCAGGGT-CCC-----C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87581586 23 - 96509753 GCCTT------CGTCAAGCCAGGGT-CCC-----C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7073298 23 - 13098629 GCCTC------CGTCAAGCCAGGGT-CCC-----C i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4040592 23 - 4483953 GCCTC------CGTCAAGCCAGGGT-TCC-----C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24670626 28 + 33263144 GCCTC------CGTCAAGCCAGGGT-CCCCCCCAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934802 23 - 14338769 GCCTC------CGTCAAGCCAGGGT-CCC-----C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888871 23 + 1946073 GCCTC------CATCAAGCCAGGGT-CCC-----C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916008 23 - 2117846 GCCTT------CGTCAAGCCAGGGT-CCC-----C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8832581 23 - 16357246 GCCTT------CGTCAAACCAGGGT-CTC-----C i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308272 23 - 1807191 GCCTT------CGTGAAGCCAGGGT-CTC-----C i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36262540 23 - 42659167 GCAAC------TGTCAAGATTGGGA-TCC-----C i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82781189 24 + 104043685 -----ACATATCATAGAACCAGGGT-CAC-----T i mm10.chr15 I 23 I 160 s canFam3.chr10 46075296 23 - 69331447 GCGGG------GGTCAAGTCCGGTC-CCC-----A i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 48768 20 + 1056298 ---TC------CGCTTGGCCAGGGA-CCA-----G i dasNov3.JH570235 I 1 C 0 e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5669982 4352 + 108171978 I a score=54946.000000 s hg38.chr22_GL383582v2_alt 53817 5 + 162811 CCAGA s panTro5.chr22 9009120 5 - 37823149 CCAGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41108260 5 + 50109623 CCAGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130833 5 + 4464012 CCAGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106626344 5 - 115148730 CCAGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84236358 5 + 92844088 CCAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87581609 5 - 96509753 CCAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7073321 5 - 13098629 CCAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4040615 5 - 4483953 CCAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24670654 5 + 33263144 CCAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934825 5 - 14338769 CCAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888894 5 + 1946073 CCAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916031 5 - 2117846 CTAGA i calJac3.chrUn_GL286373 C 0 I 17057 s saiBol1.JH378157 8832604 5 - 16357246 CCAGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308295 5 - 1807191 CCAGA i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36262563 5 - 42659167 CAGGC i otoGar3.GL873526 C 0 I 13 s canFam3.chr10 46075319 5 - 69331447 CCAGG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 48788 5 + 1056298 GCAGG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82781213 160 + 104043685 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5669982 4352 + 108171978 I a score=391577.000000 s hg38.chr22_GL383582v2_alt 53822 43 + 162811 CTACAGG-TCCTAGTCCT---A---TTTGAACCTTGGACGACCCCCGGGG s panTro5.chr22 9009125 43 - 37823149 CTACAGG-TCCTAGTCCT---A---TTTGAACCTTGGACGACCCCCGGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41108265 43 + 50109623 CTACAGG-TCCTAGTCCT---A---TTTGAACCTTGGACGACCCCCGGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130838 43 + 4464012 CTACAGG-TCCTAGTCCT---A---TTTGAACCTTGGACGACCCCCGGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106626349 43 - 115148730 CTACAGG-TCCTAGTCCC---A---AGTGAGCCTTGGGCGACCCCTGGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84236363 43 + 92844088 CTGCAGG-TCCTAGTCCT---A---TTTGAGCCTTGGGCGACCCCCGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87581614 43 - 96509753 CTGCAGG-TCCTAGTCCT---A---TTTGAGCCTTGGGCGACCCCCGGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7073326 43 - 13098629 CTGCAGG-TCCTAGTCCT---A---TTTGAGCCTTGGGCGACCCCCGGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4040620 43 - 4483953 CTGCAAG-TCCTAGTCCT---A---TTTGAGCCTTGGGCGACCCCCGGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24670659 43 + 33263144 CTGCAGG-TCCTAGTCCT---G---TTTGAGCCTTGGGTGACCCCCGGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934830 43 - 14338769 CTGCAGG-TCCTAGTCCT---A---TTTGAGCCTTGGGCTACCCCCGGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888899 43 + 1946073 CTGCAGG-TCCTAGTCCC---A---AGTGAGCCTTGGGCGACCCCTGGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933093 43 - 2117846 CTGCAGG-TCCTAGTTCC---A---AATGGGCCTTGGGCGACCCCTGGGG i calJac3.chrUn_GL286373 I 17057 T 17100 s saiBol1.JH378157 8832609 43 - 16357246 CTGCAGG-TCCTAGTCCC---A---AGTGAGCCTTGGGCCACCCTTGGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308300 43 - 1807191 CTGCAGG-TCCTAGTCCC---A---AGTGAACCTTGGGCCAAGCTTGGGG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36262581 43 - 42659167 CTCCCTG-CACAAGCTTT---C---CCTGACCCTGAGGCTGCCCGTAGAA i otoGar3.GL873526 I 13 C 0 s canFam3.chr10 46075324 47 - 69331447 CTGCAGGCCCCCAGTCTCGGGG---TGCTAGCCTTGGGGCACCCCTGGGG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 48793 45 + 1056298 CTGCTGG-CCCCCGACTC---AGCGCGCCAGCCTTGCG-GACCCTCAGGA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82781213 160 + 104043685 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5669982 4352 + 108171978 I a score=275137.000000 s hg38.chr22_GL383582v2_alt 53865 30 + 162811 CTACC--------------AGGAGTGAGCAGGTGGAAGGAGGAG s panTro5.chr22 9009168 30 - 37823149 CTACC--------------AGGAGTGAGCAGGTGGAAGGAGGAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41108308 30 + 50109623 CTACC--------------AGGAGTGAGCAGGTGGAAGGAGGAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130881 30 + 4464012 CTACC--------------AGGAGTGAGCAGGTGGAAGGAGGAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106626392 30 - 115148730 CTACC--------------AGGAGTGAGCAGGTGGAAGGAGGAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84236406 30 + 92844088 ATACC--------------AGGAGTGAGCAGGTGGAAGGAGGAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87581657 30 - 96509753 ATACC--------------AGGAGTGAGCAGGTGGAAGGAGGAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7073369 30 - 13098629 ATACC--------------AGGAGTGAGCAGGTGGAAGGAGGAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4040663 30 - 4483953 CTACC--------------AGGAGTGAGCAGGTGGAAGGAGGAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24670702 30 + 33263144 ATACC--------------AGGAGTGAGCAGGTGGAAGGAGGAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934873 30 - 14338769 CTACC--------------AGGAGTGAGCAGGTGGAAGGAGGAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888942 30 + 1946073 ATACC--------------AGGAGTGAGCAGGTGGAAGGAGGAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916036 30 - 2117846 CTACC--------------AGGAGTGAGCAGGTGGAAGGAGGAG i calJac3.chrUn_GL286373 T 17100 C 0 s saiBol1.JH378157 8832652 30 - 16357246 CTAGC--------------AGGAGTGAGCAGGTGGAAGGAGGAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308343 30 - 1807191 CTACC--------------AGGAGTGAGCAGGTGGAAGAAGGAG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36262624 44 - 42659167 ATACCACTGAAACAGCCTGAAGGGTAAGTGCCTGGAAAGGAAAG i otoGar3.GL873526 C 0 I 72 s canFam3.chr10 46075371 27 - 69331447 ---CC--------------AGCAGCACTCTGGTGCAAGGGCCCG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 48838 7 + 1056298 ----------------------------CATCTGG--------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82781213 160 + 104043685 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5669982 4352 + 108171978 I a score=48006.000000 s hg38.chr22_GL383582v2_alt 53895 6 + 162811 ACCCAG s panTro5.chr22 9009198 6 - 37823149 ACCCAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41108338 6 + 50109623 ACCCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130911 6 + 4464012 ACCCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106626422 6 - 115148730 ACCCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84236436 6 + 92844088 ACCTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87581687 6 - 96509753 ACCTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7073399 6 - 13098629 ACCTGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4040693 6 - 4483953 ACCTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24670732 6 + 33263144 ACCTGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934903 6 - 14338769 ACCTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888972 6 + 1946073 ACTTGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916066 6 - 2117846 ACTCAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8832682 6 - 16357246 ACCCAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308373 6 - 1807191 ACCCAG i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46075398 6 - 69331447 ATCTGG i canFam3.chr10 C 0 C 0 e mm10.chr15 82781213 160 + 104043685 I e dasNov3.JH570235 48845 0 + 1056298 C e otoGar3.GL873526 36262668 72 - 42659167 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5669982 4352 + 108171978 I a score=207978.000000 s hg38.chr22_GL383582v2_alt 53901 31 + 162811 CCTCCTGATCCTGGGGCGGGGGT--G-----GGGGTCA s panTro5.chr22 9009204 31 - 37823149 CCTCCTGATCCTGGGGCGGGGGT--G-----GGGGTCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41108344 31 + 50109623 CCTCCTGATCCTGGGGCGGGGGT--G-----GGGGTCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3130917 29 + 4464012 CCTCCTGATCCTGGGG-GGGGGT--------GGGGTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106626428 31 - 115148730 CCTCCTGATCCTGGGGCGGGGGT--G-----GGGTTCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84236442 31 + 92844088 CCTCATGATCCTGAGGTGGGGGT--G-----GGGTTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87581693 31 - 96509753 CCTCATGATCCTGAGGTGGGGGT--G-----GGGTTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7073405 31 - 13098629 CCTCATGATCCTGAGGTGGGGGT--G-----GGGTTCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4040699 31 - 4483953 CCTCATGATCCTGAGGTGGGGGT--G-----GGGTTCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24670738 31 + 33263144 CCTCATAATCCTGAGGTGGGGGT--G-----GGGTTCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934909 31 - 14338769 CCTCATGATCCTGAGGTGGGGGT--G-----GGGTTCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 888978 31 + 1946073 CCTCATGCTCCTGAGGTGGGGGT--G-----GGGTTCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916072 31 - 2117846 CCTCCTGATCCTAGGGCAGGGAT--G-----GGGGTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8832688 31 - 16357246 CCTCCTGATCCTGGGGTGGGGAT--G-----GGGGTCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308379 33 - 1807191 TCTCCTGATCCTAGGGCAGAGATGGG-----GGGGTCA i cebCap1.NW_016107750v1 C 0 C 0 s mm10.chr15 82781373 34 + 104043685 CATCCCCATCCT--GGTGAGGCT--GCCTATGACTGCA i mm10.chr15 I 160 I 6 s canFam3.chr10 46075404 19 - 69331447 CCCCGTGACCCTGGGGTCA------------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 48845 17 + 1056298 -CTCCTGGGCTCGGGTCA-------------------- i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36262668 72 - 42659167 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5669982 4352 + 108171978 I a score=1041384.000000 s hg38.chr22_GL383582v2_alt 53932 119 + 162811 CACCTTCTG----TGATGGAGGAACTCAGTTTGGATG-CGTC----ACCCAGGTATG----ACCTTGCAAGAGTCACCAAAATTGCCGAGAGGCCCCAGTTAGC-ATCCCATTCC-CAGA---------TGATGGTCCATGCC------ s panTro5.chr22 9009235 119 - 37823149 CACCTTCTG----TGATGGAGGAACTCAGTTTGGATG-CGTC----ACCCAGGTATG----ACCTTGCAAGAGTCACCAAAATTGCCGAGAGGCCCCAGTTAGC-ATCCCATTCC-CAGA---------TGATGGTCCATGCC------ i panTro5.chr22 C 0 C 0 s panPan2.chr22 41108375 119 + 50109623 CACCTTCTG----TGATGGAGGAACTCAGTTTGGATG-CGTC----ACCCAGGTATG----ACCTTGCAAGAGTCACCAAAATTGCCGAGAGGCCCCAGTTAGC-ATCCCATTCC-CAGA---------TGATGGTCCATGCC------ i panPan2.chr22 C 0 M 323 s gorGor5.CYUI01015375v1 3130946 119 + 4464012 CAACTTCTG----TGATGGAGGAACTCAGTTTGGATG-CGTC----ACCCAGGTATG----ACCTTGCAAGAGTCACCAAAATTGCCGAGAGGCCCCAGTTAGC-ATCCCATTCC-CAGA---------TGATGGTCCATGCC------ i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106626459 120 - 115148730 CACCTTCTA----GGATGGAGGAACTCAGTTTGGATG-CGTC----ACCCAGGTATG----ACCTTGCAAGGGTCACCAAAATTGCCCATAGGCCCCAGTTAAC-ATCCTATTTTACAGA---------TGATGGTCCATGCC------ i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84236473 120 + 92844088 CACCTTCTA----TGATGGAGGAACTCAGTTTGGATG-CATC----ACCCAGCTATG----ACCTTATAAGGGTCACCAAAATTGCCGATAGACCCCAGTTAGC-ATCCCATTTTACAGA---------TGATGGTCCATGCC------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87581724 120 - 96509753 CACCTTCTA----TGATGGAGGAACTCAGTTTGGATG-CATC----ACCCAGCTATG----ACCTTATAAGGGTCACCAAAATTGCCGATAGACCCCAGTTAGC-ATCCCATTTTACAGA---------TGATGGTCCATGCC------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7073436 120 - 13098629 CACCTTCTA----TGATGGAGGAACTCAGTTTGGATG-CATC----ACCCAGCTATG----AGCTTATAAGGGTCACCAAAATTGCCGATAGACCCCAGTTAGC-ATCCCATTTTACAGA---------TGATGGTCCATGCC------ i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4040730 120 - 4483953 CACCTTCTA----TGATGGAGGAACTCAGTTTGGCTG-CATC----ACCCGGCTATG----ACCTTATAAGGGTCACCAAAATTGCTGATAGACCCCAGTTAGC-ATCCCATTTTACAGA---------TGATGGTCCATGCC------ i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24670769 120 + 33263144 CACCTTCTA----TGATGGAGGAACTCAGTTTGGATG-CATC----ACCCAGCTATG----ACCTTATAAGGGTCACCAAAATTGCCGATAGACCCCAGTTAGC-ATCCCATTTTACAGA---------TGATGGTCCATGCC------ i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934940 120 - 14338769 CACCTTCTA----TAATGGAGGAACTCAGTTTGGCTG-CATC----ACCCGGCTATG----ACCTTTTAAGGGTCACCAAAATTGCCAATAGACCCCAGTTAGC-ATCCCATTTTACAGA---------TGATGGTCCATGCC------ i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 889009 120 + 1946073 CACCTTCTG----TGATAGAGGAACTCAGTTTGGATG-CATC----ACCCAGCTATA----ACCTTACAAGGGTCACCAAAATTGCAGATAGACCCCAGTTAGC-ATCCCATTCTACAGA---------TGATGGTCCATGCC------ i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916103 118 - 2117846 CAACTTCTA----TAACGCAGGAACTCAGTTTAGATG---TC----ACCTGGGTATG----ACCTTGCAAGAGTGACTGAAATTGCAGACAGGCCCCAGTTAGC-ATCCCATTTCACAGA---------TGATCTTCCATACT------ i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8832719 112 - 16357246 CACTTTCTA----TAACGGAGGAACTCAGTTTG-------------ACCCAGGTATG----ACATTGCAAGAGTCACCGAAATTGCAGACAGGTCCCAGTTAGC-ATCCCATTTCACAGA---------TGATGGTCCATGCC------ i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308412 118 - 1807191 CAACTTCTA----TAACAGAGGAACTCAGTTTAGATA---TC----ACCTGAGTATG----ACCTTGCAAGAGTCACCGAAATTACAGATAGGCCCCAGTTAGC-ATCCCATTTCACAGA---------TGATGGTCCATGCC------ i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36262740 134 - 42659167 CATTCTCTA----TGGCTGAGGGACTCAGTTTGTATC-CAAC---AACCCAGCTATGTATAACGTTGCAAAAGTCACTGGAATTGATAGCACGTCCCAGGCAGCAATcccatttcacagaggaggagactgagggtcaccga------- i otoGar3.GL873526 I 72 C 0 s mm10.chr15 82781413 118 + 104043685 TATCTTTTAAGTTCAGCAAAGGAA-TCACAGTAGATG-TGAC---TTCCCAGTGGGG----ACCTTGCCAGAGCCA-GAAAACTGTCCTGGGTTCT---TTAGA-ATGTCAACATTCA-----------TGAAGAAACTTGTT------ i mm10.chr15 I 6 I 8 s canFam3.chr10 46075423 117 - 69331447 CACTCTCTA----CGGAGGAGGGGCTGCCGCTGGATC-AGACCTCTTCTTAGCTCTG----ACTTTGCAAAGGTCGCCAAAATTGTCAGTGGGCCAT-GTTAG--atccccttctacagg---------tgaagaaac----------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 48862 125 + 1056298 -CCCTCCCG----GGGACTAGCACCTCACCTTGGATCCCACC----ATCCAGATGGG----GCTCCATGAGGATCACCAAAA-TGTCAGTAGGCCCGAGCTAGG-GCCTCATTGTACTGA---------TGAAGGAAGCGGCTCAGGGA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5669982 4352 + 108171978 I a score=705583.000000 s hg38.chr22_GL383582v2_alt 54051 91 + 162811 GGTGAGCAGTGAGGCCCGAGGACCCACAGTGC-AAAAGGTTTGAACCGGGTCACTGCACCCCCTTCATCCTCGATTTCGTGATTTAAACGGC s panTro5.chr22 9009354 91 - 37823149 GGTGAGCAGTGAGGCCCGAGGACCCACAGTGC-AAAAGGTTTGAACCGGGTCACTGCACCCCCTTCATCCTCGATTTCGTGATTTAAACGGC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3131065 91 + 4464012 GGTGAGCAGTGAGGCCCGAGGACCCACAGTGC-AAAAGGTTTGAACCGGGTCACTGGCATCCCTTCATCCTTGATTTCCTGATTTAAACGGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106626579 91 - 115148730 GGTGAGCAGTGAGGCCCGAGGACCCACAGTGC-AAAAGGTTTGAACCGGGTCACTGCACCCCCTTCATCCTTGATTTCCTGATTTAAACGGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84236593 91 + 92844088 AGTGAGCAGTGAGGCCTGAGGACCCACAGTGC-AAAAGGTTTGAACCAGGTCACTGCACACCCTTCATCCTTGATTTCCTGATTTAAAGACC i rheMac8.chr10 C 0 I 15 s macFas5.chr10 87581844 91 - 96509753 AGTGAGCAGTGAGGCCTGAGGACCCACAGTGC-AAAAGGTTTGAACCAGGTCACTGCACACCCTTCATCCTTGATTTCCTGATTTAAAGACC i macFas5.chr10 C 0 I 2 s macNem1.NW_012012688v1 7073556 91 - 13098629 AGTGAGCAGTGAGGCCTGAGGACCCACAGTGC-AAAAGGTTTGAACCAGGTCACTGCACACCATTCATCCTTGATTTCCTGATTTAAAGACC i macNem1.NW_012012688v1 C 0 I 15 s cerAty1.NW_011999588v1 4040850 88 - 4483953 AGTGAGCAGTGAGGCCTGAGGACCCACAGTGC-AAAAGGTTTGAACCAGGTCACTGCACATCCTTCA---TTGATTTCCTGATTTAAACGGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24670889 91 + 33263144 AGTGAGCAGTGAGGCCTGAGGACCCACAGTGC-AAAAGGTTTGAACCGGGTCACTGCACACCCTTCATCCTTGATTTCCTGATTTAAACGGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13935060 91 - 14338769 AGTGAGCAGTGAGGCCTGAGGACCCACAGTGC-AAAAGGTTTGAACCAGGTCACTGCACACCCTTCATCCTTGATTTCCTGATTTAAACGGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 889129 91 + 1946073 AGTGAGCAGTGAGGCCTGAGGACCCACAGTGC-AAAAGGTTTGAACCAGGTCACTGCACACCTTTCATCCTAGATTTCCCGATTTAAACGGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916221 91 - 2117846 GGTGAGCAGTGAGGCCGAGGAATGCAGAGTGC-AAAAGGCTTGAACCAGGTCACTGCGTCCTCTTCATCCTTGATTTCCTGATTTAAACGTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8832831 90 - 16357246 GGTGAGCAGTGAGGCGGGGGAACGCAGAGTGC-AAAAGGCTTGAACTGGGTCACTGCACCCCCTTCATCCTTGA-ATCCTGATTTAAATGGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308530 90 - 1807191 GGTGAGCAGTGAGGCCAGGGAATGCAGAGTGC-AAAAGGCTCGTACCGGGTCACTGCACCCCCTTCATCCTTGA-ATCCTGATTTAAACGGC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36262874 84 - 42659167 ggtgagtagccagacccaaggactgacagcaagaagacatttgaaccggccctct--------ctcaacctcagtttcctcatttcaGTGGT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82781539 72 + 104043685 -ATTGGCAGTGAGGCCAGAGAGCACACAGCAG-CAAGAAATTCAGGCAGGT-ACAGCACCTCTCTCCAC---------------TCAGTG-- i mm10.chr15 I 8 C 0 s canFam3.chr10 46075540 80 - 69331447 ---------tgaggctcaAGAACCCACAGCGG-CTAGAGTTGTACCT--GTCATTGTACCTATGTTAGCCCCGGTTTCCTGACTGAGATGGG i canFam3.chr10 C 0 I 7 s dasNov3.JH570235 48987 72 + 1056298 CGAGAGCAGCGAGGCCATGGGCCACATAGCCG------------------TCACTGTCCCCTCTCCA--CAGGATTTCCTGATTTAAATGGA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5669982 4352 + 108171978 I e panPan2.chr22 41108494 323 + 50109623 M a score=46985.000000 s hg38.chr22_GL383582v2_alt 54142 8 + 162811 ACTCAGGA s panTro5.chr22 9009445 8 - 37823149 ACTCAGGA i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3131156 8 + 4464012 ACACAGGA i gorGor5.CYUI01015375v1 C 0 I 2 s nomLeu3.chr7b 106626670 8 - 115148730 ACTCAGGA i nomLeu3.chr7b C 0 I 2 s macFas5.chr10 87581937 8 - 96509753 ACTTTAAA i macFas5.chr10 I 2 I 5 s cerAty1.NW_011999588v1 4040938 8 - 4483953 ACTCAGGA i cerAty1.NW_011999588v1 C 0 I 2 s chlSab2.chr19 24670980 8 + 33263144 ACTCAGGA i chlSab2.chr19 C 0 I 2 s manLeu1.NW_012102031v1 13935151 8 - 14338769 ACTCAGGA i manLeu1.NW_012102031v1 C 0 I 2 s colAng1.NW_012115588v1 889220 8 + 1946073 ACTCAGGA i colAng1.NW_012115588v1 C 0 I 2 s calJac3.chrUn_GL286373 1916312 8 - 2117846 GCTCAGGA i calJac3.chrUn_GL286373 C 0 I 2 s saiBol1.JH378157 8832921 8 - 16357246 ACTCAGGA i saiBol1.JH378157 C 0 I 2 s cebCap1.NW_016107750v1 1308620 8 - 1807191 ACTCAGGA i cebCap1.NW_016107750v1 C 0 I 2 s otoGar3.GL873526 36262958 8 - 42659167 CCTTGTGA i otoGar3.GL873526 C 0 I 2 s mm10.chr15 82781611 6 + 104043685 --TCCGGA i mm10.chr15 C 0 C 0 s canFam3.chr10 46075627 8 - 69331447 AGTCCAGA i canFam3.chr10 I 7 C 0 s dasNov3.JH570235 49059 5 + 1056298 ---GAGGA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5669982 4352 + 108171978 I e macNem1.NW_012012688v1 7073647 15 - 13098629 I e rheMac8.chr10 84236684 15 + 92844088 I e panPan2.chr22 41108494 323 + 50109623 M a score=698357.000000 s hg38.chr22_GL383582v2_alt 54150 96 + 162811 CTAACTCATCTTCCATTCCCAAGGCCTTTCCTTCT---GGTGTCAGCAGAAGGGACTTT---GTAC-TCCATAA-CATATG--TTGCCCAATGGGCTTGCATGCCC s panTro5.chr22 9009453 96 - 37823149 CTAACTCATCTTCCATTCCCAAGGCCTTTCCTTCT---GGTGTCAGCAGAAGGGACTTT---GTGC-TCCATAA-CATATG--TTGCCCAATGGGCTTGCACGCCC i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3131166 96 + 4464012 CTGACTCCTCTTCCATTCCCAAGGCCTTTTCTTCT---GGTGTCAGCAGAAGGGACTTT---GTGC-TCCATAA-CATATG--TTGCCCAATGGGCTTGCACGCCC i gorGor5.CYUI01015375v1 I 2 C 0 s nomLeu3.chr7b 106626680 96 - 115148730 CTGACTCGTCTTCCATTCCCAAGGCCTTTCCTTCT---GGTGTCAGCAGAAGGGACTCT---GTGC-TCCATAA-CATATG--TTGCCCAATGGGCTTGCACGCCC i nomLeu3.chr7b I 2 C 0 s rheMac8.chr10 84236699 95 + 92844088 CTGACTTGTCTTCCATTCGTAAGTCCTTTCCTTCT---GGTGTCAGCAGAAGGGACTTT---GTGC-TCCATAA-CATATT--GTGCCC-ATGGGCTTGCACGCCC i rheMac8.chr10 I 15 C 0 s macFas5.chr10 87581950 96 - 96509753 CTGACTTGTCTTCCATTCGTAAGTCCTTTCCTTCT---GGTGTCAGCAGAAGGGACTTT---GTGC-TCCATAA-CATATT--GTGCCCAATGGGCTTGCACGCCC i macFas5.chr10 I 5 C 0 s macNem1.NW_012012688v1 7073662 96 - 13098629 CTGACTTGTCTTCCATTCGTAAGTCCTTTCCTTCT---GGTGTCAGCAGAAGGGACTTT---GTGC-TCCATAA-CATATT--GTGCCCAATGGGCTTGCACGCCC i macNem1.NW_012012688v1 I 15 C 0 s cerAty1.NW_011999588v1 4040948 96 - 4483953 CTGACTTGTCTTCCATTCGTAAGTCCTTTCCTTCT---GCTGTCAGCAGAAGGGACTTT---GTGC-TCCATAA-CATATT--GTGCCCAATGGGCTTGCACGCCC i cerAty1.NW_011999588v1 I 2 C 0 s chlSab2.chr19 24670990 96 + 33263144 CTGACTTGTCTTCCATTCCTAAGTCCTTTCCTTCT---GGTGTCAGCAGAAGGGACTTT---GTGC-TCCATAA-CATATT--GTGCCCAATGGGCTTGCACGCCC i chlSab2.chr19 I 2 C 0 s manLeu1.NW_012102031v1 13935161 96 - 14338769 CTGACTTGTCTTCCATTCGTAAGTCCTTTCCTTCT---GGTGTCAGCAGAAGGGACTTT---GTGC-TCCATAA-CATATT--GTGCCCAATGGGCTTGCACGCCC i manLeu1.NW_012102031v1 I 2 C 0 s colAng1.NW_012115588v1 889230 96 + 1946073 CTGACTTGTCTTCCACTCCCAAGGCCTTTCCTTCT---GGTGTCAGCAGAAGGCACTTT---GTAC-TCCATAA-CATATT--GTGCCCAAAGGGCTTGCAAGCCC i colAng1.NW_012115588v1 I 2 C 0 s calJac3.chrUn_GL286373 1916322 96 - 2117846 CTGAACCCTTTCCCGTTCCTAAGGCCTTTCCTTCT---GCTGTCACCAGAGGGGACTTT---GTGC-TCCAGAG-TCTATG--CTGCCCAGCGGGCTTGCACAACC i calJac3.chrUn_GL286373 I 2 C 0 s saiBol1.JH378157 8832931 96 - 16357246 CTGACTCCTTTCCCATTCCCAAGGCCTTTCCTTCC---AGTGTCAGCAGAGGGGACTTT---GTGC-TCCAGAG-TCTATG--CTGCCCAGCAGGCTTGCATAACC i saiBol1.JH378157 I 2 C 0 s cebCap1.NW_016107750v1 1308630 94 - 1807191 CTGACTCCTCTCCTACTCCCAAGGCCTTTCCTTCC---AGTGTCAGCAGAGGGGACTTT---GTGC-TC--GAG-TCTATG--TTTCTCAGCGGGCTTGTACAACC i cebCap1.NW_016107750v1 I 2 C 0 s otoGar3.GL873526 36262968 99 - 42659167 CTCACCCTCCTCTCATTCCCCAGACCTTTCCTTCT---GGAGTAATCAGAAGGGACTTG---GGCCTTCCATAA-CTTCTGCATTGTCCAACAGGCTTGCAGACCC i otoGar3.GL873526 I 2 C 0 s mm10.chr15 82781617 80 + 104043685 CTGAC--ATCCTACACT----AAACCTCT-----------TACCAGGGTAAGATGCTAT---GTTT-GGTAGGACCATAAG--AGACCC---GGACCTGTATGGCT i mm10.chr15 C 0 C 0 s canFam3.chr10 46075635 95 - 69331447 --ATTCCTTCCCCTATTCTCACAACTCTTCCTCCT---GAAGGAACCAGAAGGGACCCA---G-GT-CACGTAA-TTTAAGGACTGTCCAACCAGCTCTCAAATCC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 49064 91 + 1056298 -------CTCTCCCACC----AACTCTTGCCTTCTTTGGTGGTCA--AGAGGGGACTGCCGAGTTT-TTCATAA-CCTTTGTGCGGTCCAGCTGGATCCCAGGCCC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5669982 4352 + 108171978 I e panPan2.chr22 41108494 323 + 50109623 M a score=779634.000000 s hg38.chr22_GL383582v2_alt 54246 90 + 162811 ACTGCCAAGTCCAGCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGCCTTT---GGAAAATCCA----GTCCTTCATGCCATGTATAAATGTCC s panTro5.chr22 9009549 90 - 37823149 ACTGCCAAGTCCAGCTCCA------CCTCGAGGC---CCTTGC-CCTAGTCTT---CCTTGGCCTTT---GGAAAATCCA----GTCCTTCATGCCATGTATAAATGCCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41108817 90 + 50109623 ACTGCCAAGTCCAGCTCCA------CCTCGAGGC---CCTTGC-CCTAGTCTT---CCTTGGCCTTT---GGAAAATCCA----GTCCTTCATGCCATGTATAAATGCCC i panPan2.chr22 M 323 C 0 s gorGor5.CYUI01015375v1 3131262 90 + 4464012 ACTGCCAAGTCCAGCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGCCTTT---GGAAAATCCG----GTCCTTCATGCCATGTATAAATGCCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106626776 90 - 115148730 ACTGCCAAGTCCAGCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGACTTT---GGAAAATCCA----GTCCTTCATGCCATGTATAAATGCCC i nomLeu3.chr7b C 0 T 14000 s rheMac8.chr10 84236794 90 + 92844088 ACTGCCAAGTCCAGCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGTTTTT---GGAAAATCCA----GTCCTTCGTACCATGCACAAATGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87582046 90 - 96509753 ACTGCCAAGTCCAGCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGTTTTT---GGAAAATCCA----GTCCTTCGTACCATGCACAAATGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7073758 90 - 13098629 ACTGCCAAGTCCAGCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGTTTTT---GGAAAATCCA----GTCCTTCGTACCATGCACAAATGCCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4041044 90 - 4483953 ACTGCCAAGTCCAGCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGTTTTT---GGAAAATCCA----GTCCTTCGTGCCATGCACAAATGTCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24671086 77 + 33263144 ACTGCCAAGTCCAGCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGTTTTT---GGAAAATCCA----GTCCTTC-------------GTGCCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13935257 90 - 14338769 ACTGCCAAGTCCAGCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGTTTTT---GGAAAATCCA----GTCCTTCATGCCATGCACAAATGCCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 889326 90 + 1946073 ACTGCCAAGTCCAGCTCCA------CCTCCCGGC---CCTTGC-CCTCCTCTT---CCTTGACCTTT---GGAAAATCCA----GTCCTTCATGCCATGCACAAATGCCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916418 90 - 2117846 ACTGCCAAGTCCAGCCCCA------CTTGCAGgc---ccttgc-cctactctt---ccttggcattc---agaaaatcta----atccttcaggccgtgtacaaatgccc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8833027 90 - 16357246 ACTGCTAAGTCCAGCCCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGACATTT---GGAAAATCTA----ATCCTTCAGGCTATGTAAAAATGCCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308724 90 - 1807191 ACTGCAAAGTCCAGCCCCA------CCTGCAGGC---CCTTGC-CCTGCTCTT---CCTTGGCATTT---GGAAACTCTA----ATCCTTCAGGCTGTGTACAAATACCC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36263067 75 - 42659167 AGTGCCCAGTCGCACCTCA------CCTCCAGGC------------------T---TTTTTGCCTTT---GGAAATTTCAAACTGTCCCTAAGGCCATGC-----TGTCC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82781697 90 + 104043685 GCTGCCCTCTCCTACTAGAGTGAACCCTTCAGTCACATCTTGCTTCAACTCCTGAACTTTGACCCTG---AAAACATTTA------CCT-----------AGAAATTCCC i mm10.chr15 C 0 I 6 s canFam3.chr10 46075730 88 - 69331447 ACCGCCAAGGCCACACTCC------ACTCCAGGC---CTTGGT-TCTCTCTGA---CCTTTGA--TT---GGAAAATCCAATCGGTCCTGCAGGCTCTGGACATCA---- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 49155 66 + 1056298 ACGGCCAGGTCCCACCCT-------CCTCCAGAC----TTTGC-CCTCCCCTC---ACTTTGCTTTCCCAGGGAAATCCC----T------------------------- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5669982 4352 + 108171978 I a score=950813.000000 s hg38.chr22_GL383582v2_alt 54336 100 + 162811 TTCCCCAGGACGTCCCCCAAACCTGCTTCCCCTTCTCAGCCTGGCTTCTGATCCAGCCTGTGGTTTAACCCACCACC-CA-TGTTTGCTGGTGGTGGGGCAT s panTro5.chr22 9009639 100 - 37823149 TTCCCCAGGAAGTCCCCCAAACCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTGCAGCCTGTGGTTTCACCCACCATC-CA-TGTTTGCTTCTGGTAGGGGAG i panTro5.chr22 C 0 n 0 s panPan2.chr22 41108907 100 + 50109623 TTCCCCAGGAAGTCCCCCAAACCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTGCAGCCTGTGGTTTCACCCACCATC-CA-TGTTTGCTTCTGGTAGGGGAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3131352 100 + 4464012 TTCCCCAGGAAGTCCCCCAAACCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGCCTGTGGTTTCACCCACCACC-CA-TGTTTGATTCTGGTAGAGGAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106612866 100 - 115148730 TCCCCCAGGAAGTCCCCCAAACCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGACTGTGGTTTCACCCACCACC-CA-TGTTTGCTGGTGGTGGGGGAT i nomLeu3.chr7b T 14000 C 0 s rheMac8.chr10 84236884 98 + 92844088 TCCCCCTGGAAGTCCCCCAAACCCGCT--CCCTTCTCAGCCTGGCTTCTGGTCCAGCCTGTGGTTTCACCCACCACC-CA-TGTTTGCTGCTGGTGGGGGAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87582136 98 - 96509753 TCCCCCTGGAAGTCCCCCAAACCCGCT--CCCTTCTCAGCCTGGCTTCTGGTCCAGCCTGTGGTTTCACCCACCACC-CA-TGTTTGCTGCTGGTGGGGGAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7073848 98 - 13098629 TCCCCCTGGAAGTCCCCCAAACCCGCT--CCCTTCTCAGCCTGGCTTCTGGTCCAGTCTGTGGTTTCACCCACCACC-CA-TGTTTGCTGCTGGTGGGGGAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4041134 98 - 4483953 TCCCCCTGGAAGTCCCCCAAACCCGCT--CCCTTCTCAGCCTGGCTTCTGGTCCAGCCTGTGGTTTCACCCACCACC-CA-TGTTTGCTGCTGGTGGGGGAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24671163 100 + 33263144 TCCCCCTGGAAGTCCCCCAAACCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGCCTGTGGTTTCACCCACTACC-CG-TGTTTGCTGCTGGTGGGGGAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13935347 100 - 14338769 TCCCCCAGGAAGTCCCCCAAACCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGCCTGTGGTTTCACCCACCACC-CA-TGTTTGCTGCTGGTGGGGGAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 889416 100 + 1946073 TCCCCCAGGAAGTCCCCCAAACCTGCTTCCCCTTCTCAGCCTGGCTTCTGATCCAGCCTGTGGTTTCACTCACCACC-CA-TGTTTGCTGCTGCTGGGGGAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916508 100 - 2117846 tcccccaggaagtcccccAAACCTGCTTCCCTTTTGCAGCCTGGCTTCTGGTCCAGCCTGTGGCTTCACCCACCACC-CA-TGTTTGCTGCTGGTGGGGGAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8833117 98 - 16357246 T-CCCCAAGAAGTCCCTCAAACCTGCTTCCTCTTTGCAG-CTGGCTTCTGGTCCAGCCTGTGGCTTCACCCACCACC-CA-TGTTTGCTGCTGGTGGGGGGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308814 100 - 1807191 TCCCCCAGGAAGTCCCCCAAACCTACTTCCCCTTCGCAGCCTGGCTTCTGGTCCAGCCTGCAGTTTCACCCACCACC-CG-TGTTTGCTGCTGGTAGGGGGT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36263142 91 - 42659167 ---TTCAGGGAGCCACTTCAACCTGCTTCCTCTTCTGGG----GGTGCTTGCCCAGATGGTGGCTTTGCTCACCACC-CA-TGTCTCCTGCTAGGAGGAC-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82781793 91 + 104043685 TACCTCCAAAAGTTGC-CAATCCTGTC--CCCTTTGGGGGCCAGATCCCTGTTTGACCTGTGGCTTAGCCC----TC-AC-TGTGTGCTGCTACAGACAC-- i mm10.chr15 I 6 C 0 s canFam3.chr10 46075818 63 - 69331447 ------------------------------TCTTCCCAT-----CTCCTTGTGCAGCCTGAAGCTCCACCCGCCACC-CGCTGTCTGCTGCTAGGGGGT--- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 49221 98 + 1056298 TCCCTGAGGACGCCTCC--AGCCTGTTTCCTTTTCCGGACCTGGCTTCTTGTCCAGCCTGT-GCTTCACCCACCACCTCC-TGTCAGCACTAGGAGGGGTGC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5669982 4352 + 108171978 I a score=265681.000000 s hg38.chr22_GL383582v2_alt 54436 30 + 162811 CCTCAGGACCTCTGCCGCCCTCCAGGACCT s panTro5.chr22 28834675 30 + 37823149 CCTCAGCACCTCTGCCACCCTCCAGGACCT i panTro5.chr22 I 21509 C 0 s panPan2.chr22 41109007 30 + 50109623 CCTCAGCACCTCTGCCACCCTCCAGGACCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3131452 28 + 4464012 CCTCAGCACCTCTGC--CCCTCCAGAACCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106612966 30 - 115148730 CCTCAGGACCTCTGCCGCCCTCCAGGACCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84236982 30 + 92844088 CCTCAGGACCTCTGCCACCCTCCAGGACCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87582234 30 - 96509753 CCTCAGGACCTCTGCCACCCTCCAGGACCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7073946 30 - 13098629 CCTCAGGACCTCTGCCACCCTCCAGGACCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4041232 30 - 4483953 CCCCAGGACCTCTGCCACCCTCCAGGACCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24671263 30 + 33263144 CCTCAGGACTTCTGCCACCCTCCAGGACCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13935447 30 - 14338769 CCTCAGGACCTCTGCCACCCTCCAGGACCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 889516 30 + 1946073 CCTCAGGACCTCTGCCACCCTCTAGGACCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916608 30 - 2117846 GCTCAGGACCTCTGCCGTCATCCAGGCCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8833215 30 - 16357246 GCTCAGAACCTCTGCTGCCCTCCAGGACCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308914 30 - 1807191 GCTCAGGACCTCTGCCGCCCTCCAGGACCT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36263233 27 - 42659167 ---CCAGGCCCCTGCCACCTTCCACCACCA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82781884 27 + 104043685 TATAAGAGGAATTAAAACCCACCACTA--- i mm10.chr15 C 0 C 0 s canFam3.chr10 46075881 23 - 69331447 -CCCCAGGTCTCTGCTGCCCCCCA------ i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 49319 28 + 1056298 -CCAGAGCCCTCTGTC-CCCTGGTGAACCC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5669982 4352 + 108171978 I a score=2342758.000000 s hg38.chr22_GL383582v2_alt 54466 155 + 162811 CCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTGGAAGTCCACATGCAGCAAGGTTGCCCAGCCCGGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCAGCGTTGGTGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCAC s panTro5.chr22 28834705 154 + 37823149 CCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTGGAAGTCCACATGCAGCA-GGTTGCCCAGCCCGGGCAGTGGCAGGGGGCCTGGTGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41109037 154 + 50109623 CCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTGGAAGTCCACATGCAGCA-GGTTGCCCAGCCCGGGCAGTGGCAGGGGGCCTGGTGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATGAGGTCCACCAGGAGCAGGAAGATGGTCAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3131480 154 + 4464012 CCTCCCTCACCTGATCGAAGCAGTATGGTGTGTTCTGGAAGTCCACATGCAGCA-GGTTGCCCAGCCCGGGCAGTGGTAGGGGGCCTGGCGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106612996 154 - 115148730 CCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTGGAAGTCCACATGCAGCA-GGTTGCCCAGCCCGGGCAGTGGCAGGGGGCCTGGTGGGTAGCGTGTAGTCCAGCATTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84237012 154 + 92844088 CCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAACA-GGTTGCCCAGCCCTGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCAACGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87582264 154 - 96509753 CCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAACA-GGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCAACGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7073976 154 - 13098629 CCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAACA-GGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4041262 154 - 4483953 CCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAACA-GGTTGCCCAGCCCTGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24671293 154 + 33263144 CCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAACA-GGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13935477 154 - 14338769 CCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAGCA-GGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 889546 154 + 1946073 CCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAGCA-GGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCAGTGTTGGCGCCGGTGCATCAGATCCACCAGGAGCAGGAAGATGGCCAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916638 154 - 2117846 CTTCCCTCACCTGGTTGAAGCTGTTTGGTGTATTCTGGAAGTCCACATGCAGCA-GGTTGCCCAGCCCGGGCAGTGGCATGGGGCCAGGTGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCACGAAGATGGCCAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8833245 154 - 16357246 CCTCCCTCACCTGGTTGAAGCTCTTTGGTGTGTTCTGGAAGTCCACATGCAGCA-GGTTGCCCAGCCCGGGCAGTGGCATGGGGCCAGGCGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1308944 154 - 1807191 CCTCCCTCACCTGGTTGAAGCTGTTTGGTGTGTTCTGGAAGTCCACATGCAGCA-GGTTGCCCAGCCCGGGCAGTGGCATAGGGCCAGGCGGGTAGCGTGCAGCCCAGCGTTGGCGACGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCAC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5674334 154 + 108171978 CCTCCCTCACCTGGCTAAAGCAGTAGGGTACGTCCTGGAAGTCCACCTGCAGCA-GGTTGCCCAGCCCCGGCAGTGACATGGGGCCTGGCGGGTAGCGTGCAGCCCAGCGTGGGCGCCGGTGCATGAGGTCCACCAGGAGCAGGAAGATGGCCAC i micMur3.chr7 I 4352 I 158 s otoGar3.GL873526 36263260 154 - 42659167 CCTCCCTCACCTTGCTGAAGCAGTAAGGAATGTCCTGGAAGTCCACCTGTAGCA-GGTTGCCCAGTCCCGGCAGTGGCATGGGGCCTGGTGGGTAGCGTGCAGCCCAGCGTGGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGACGGTCAT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82781911 154 + 104043685 AGTCACTGACCTTGTACAAGCTGTATGGCATGTTATCCAGGTCCACCTGCAGCA-GGTTACCCAGCACAGGCCATAGCACAGGGCCTGGTGGGTAGCGAGAAGTCCAGCGCTGGTGCCGGTGCATCAGGTCCACCAGTAATATGAAGATGACTGT i mm10.chr15 C 0 C 0 s canFam3.chr10 46075904 154 - 69331447 CCTTCCTTACCTGGCTGAAGTAGCAGATTGGTTCCTGGAAGTCCATCTGCAGCA-GGTTGCCCACCATGGGCACTGGCGTGGGGCCTGGCGGGTAGCGTGTGGCCCAGCGCCTGCGCCGGTGCATCAGGTCTACCAGGAGCAGGAAGATGGCCAC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 49347 154 + 1056298 TCCCCCTCACCTTGTCAAAGCAGAATGGCATGTTCTGGAAGTCCACCTGTAGGA-GGTTGCCCAGGCCGGGCAGCGGCATGGGGCCTGGTGGGTAGCGAGGGGCCCAGCGTGCGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCAC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=560018.000000 s hg38.chr22_GL383582v2_alt 54621 53 + 162811 TATCATGGCCAGGGGCACCAGTGCTTC---------TAGCCCCATGGCTGCCTCACTACCAA s panTro5.chr22 28834859 53 + 37823149 TATCACGGCCAGGGGCACCAGTGCTTC---------TAGCCCCATGGCTGCCTCACTACCAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41109191 53 + 50109623 TATCACGGCCAGGGGCACCAGTGCTTC---------TAGCCCCATGGCTGCCTCACTACCAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3131634 52 + 4464012 TATCACGGCCAGGGGCACCAGTGCTTC---------TAG-CCCATGGCTGCCTCACTACCAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106613150 53 - 115148730 TATCACGGCCAGGGGCACCAGTGCATC---------CAGCCCCATGGCTGCCTCACTGCCCA i nomLeu3.chr7b C 0 I 13763 s rheMac8.chr10 84237166 53 + 92844088 TATCACAGCCAGGGGCACCAGTGCATC---------TAGCTCCATAGCTGCCTTACTGCCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87582418 53 - 96509753 TGTCACAGCCAGGGGCACCAGTGCATC---------TAGCTCCATAGCTGTCTTACTGCCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7074130 53 - 13098629 TGTCACAGCCAGGGGCACCAGTGCATC---------TAGCTCCATAGCTGCCTTGCTGCCCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4041416 53 - 4483953 TGTCACAGCCAGGGGCACCAGTGCATC---------TAGCTCCATAGCTGCCTCACTGCCCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24671447 53 + 33263144 TGTCACAGCCAGGGGCACCAGTGCATC---------TAGCTCCATAGCTGCCTCACTGCCCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13935631 53 - 14338769 TGTCACAGCCAGGGGCACCAGTGCATC---------TAGCTCCATAGCTGCCTCACTGCCCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 889700 53 + 1946073 TATCACAGCCAGGGGCACCAGTGCATC---------TAGCTCCATAGCTGCCTCACTGCCCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916792 53 - 2117846 TGTCACGGCCAGGGGCACCAGTGCATC---------CAGCCCCATGGCTGCCTCGCTGCCCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8833399 53 - 16357246 TGTCACGGCCAGGGGCACCAGTGCATC---------CAGCCCCATGGCTGCCTCGCTGCCCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1309098 53 - 1807191 TGTCAGGGCCAGGGGCACCAGTGCATC---------CAGCCCCATGGCTGCCTTGCTGCCCA i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36263414 58 - 42659167 GGCCAAGGCCAGAGTTGTCAGCACATCCCCTGTCAGCAGCCCCATGTCTGCCTGTCCA---- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82782065 62 + 104043685 GAATATGGCCACAGGCCACAGGTCAGTCCCAGTCAGCAGCTCCATGGCTGCCCCACTGCTGC i mm10.chr15 C 0 C 0 s canFam3.chr10 46076058 62 - 69331447 GGCTACGGCCAGGGGCCCCAGCGTGTCCCCGGTCAGCAGCCCCATAGCTGTCTCAGTGCCCG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 49501 62 + 1056298 GGCCACGGCCAGGGGCGCCAGTGCTTCCCCGGTCAGCAGTCCCATGGCTGCCTCCCTGTCAG i dasNov3.JH570235 C 0 I 39 e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674488 158 + 108171978 I a score=867854.000000 s hg38.chr22_GL383582v2_alt 54674 92 + 162811 CTGGGCTCCTCTGGACAC-ACCTGGCAC-CCCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCGGCACA--CCG-------------AGCGCGTGACCCTTC s panTro5.chr22 28834912 92 + 37823149 ATGGGCTCCTCTGGACAC-ACCTGGCAC-CCCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACA--CCA-------------AGTGCGTGACCCTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41109244 92 + 50109623 ATGGGCTCCTCTGGACAC-ACTTGGCAC-CCCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACA--CTG-------------AGCGCGTGACCCTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3131686 91 + 4464012 CTGGGCTCCTCTGGACAC-ACCTGGCA--CCCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACA--CCG-------------AGCGCGTGACCCTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106626966 92 - 115148730 CTGGGCTCCTCTGGACAC-ACCTGGCAC-CCCCACCCCACCAGGCACAGAG----GACTAGGCAGGACACTCTCAGCACA--CCG-------------AGTGCATGACCGTTC i nomLeu3.chr7b I 13763 C 0 s rheMac8.chr10 84237219 92 + 92844088 CTGGGCTCCTCTGGACAC-ACCTGGCTC-CCCCACCGCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACA--CCA-------------AGTGCGTGATCATTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87582471 92 - 96509753 CTGGGCTCCTCTGGACAC-ACCTGGCTC-CCCCACCGCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACA--TGA-------------AGTGCATGATCATTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7074183 92 - 13098629 CTGGGCTCCTCTGGACAC-ACCTGGCTC-CCCCACCGCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACA--CCA-------------AGTGCGTGATCATTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4041469 92 - 4483953 CTGGGCTCCTCTGGACAC-ACCTGGCTC-CCCCACCGCACCAGGCACAGAG----GACCAGGCAGGACACTCTCGGCACA--CCA-------------AGTGCGTGATCATTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24671500 92 + 33263144 CTGGGCTCCTCTGGACAC-ACCTGGCTC-CCCCACCGCACCAGGCACAGAG----GACAAGGCAGGACACTCTCAGCACA--CCA-------------AGTGCGTGATCATTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13935684 92 - 14338769 CTGGGCTCCTCTGGACAC-ACCTGGCTC-CCCCACCGCACCAGGCACAGAG----GACCAAGCAGGACACTCTCGGCACA--CCA-------------AGTGCGTGATCATTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 889753 92 + 1946073 CCGGGCTCCTCTGGACAC-ACCTGGCTC-CCCCACCACAGCAGGCACAGAG----AAGCAGGCAGGACACTCTCAGCACA--CCA-------------AGTGCGTGATCATTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916845 92 - 2117846 CTGAACTCCTCTGGACAC-CCCTGGAAC-CCCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCATA--CCG-------------AGTGTGTGACTGTTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8833452 92 - 16357246 CTGAGCTCCTCTGGACAC-ACTTGGCAC-CCCCACCCCACCAGGCACAGAG----AACCAGGCAGGACACTCTCAGCACA--CCG-------------AGTGTGTGACTGTTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1309151 91 - 1807191 CTGAGCT-CTCTGGACAC-ACTTGGCAC-CCCCACCCCACCAGGCACAGAG----GACCAGACAGGACACTCTCAGCACA--CCG-------------AGTGTGTGACTGTTC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36263472 93 - 42659167 CTGGGCTCCTGTGGTAACAACCTGGCT---GCCACCCCACCAGGCACCTAG----ACCTGGGTAGGACCCTCCTGGCACACTCTG-------------AGTGCCAGCCCAGTC i otoGar3.GL873526 C 0 I 10 s mm10.chr15 82782127 75 + 104043685 CCAGGCTTCCCAGAGACC-AATGAATA----ACACTCAATACAACACCTAG----GATCAGACAG-------------CC--CCA-------------AGCTTG-GATCCTAC i mm10.chr15 C 0 I 2 s canFam3.chr10 46076120 95 - 69331447 CTGGGCTCGT-GGGGCAC-GCCGGTGTC-CCTCACCACACCAGGGACCTGGGGCTGGCCAGCCAGGGTGCTCTCCCCGCA--CTG-------------TCCGCTCAACCGGCC i canFam3.chr10 C 0 I 8 s dasNov3.JH570235 49602 106 + 1056298 TTGGGCGGACCCGTCCAC-ACCTGGGACGCCCGGTCACACCAGGTACCTGG----GATCAGACCAGTAACTCCCAGCACA--CAAACAGGGCTTCCACAGCCTGGGCCCTGGC i dasNov3.JH570235 I 39 C 0 e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674488 158 + 108171978 I a score=480019.000000 s hg38.chr22_GL383582v2_alt 54766 37 + 162811 CCTTATAAAGGGA-GCTGATGATGGCCTTCGCCCTCTG s panTro5.chr22 28835004 37 + 37823149 CCTTATAAAGGGA-GCTGATGATGGCCTTCGCCCTCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41109336 37 + 50109623 CCTTATAAAGGGA-GCTGATGATGGCCTTTGCCCTCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3131777 37 + 4464012 CCTTATAAAGGGA-GCTGATGATGGCCTTGGCTCTCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106627058 37 - 115148730 CCTTATAAAGGGA-GCTGATGATGGCCTTTACCCTCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84237311 37 + 92844088 CCTTATAAAGGAA-GCTAATCATGGCCTTTGCCCTCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87582563 37 - 96509753 CCTTATAAAGGAA-GCTGATCATGGCCTTTGCCCTCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7074275 37 - 13098629 CCTTATAAAGGAA-GCTGATCATGGCCTTTGCCCTCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4041561 37 - 4483953 CCTTATAAAGGAA-GCTGATCATGGCCTTTGCCCTCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24671592 37 + 33263144 CCTTATAAAGGAA-GCTGATCATGGCCTTTGCCCTCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13935776 37 - 14338769 CCTTATAAAGGAA-GCTGATCATGGCCTTTGCCCTCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 889845 37 + 1946073 CCTTATAAAGGAA-GCTGATCATGGCCTTTGCCCTCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916937 37 - 2117846 CCTTATAAAGGGA-GCTGATGATGGCCTCTGCCCTCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8833544 37 - 16357246 CCTTATAAAGGGA-GCTGATGATGGCCTTTGCCCTCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1309242 37 - 1807191 CCTTATAAAGGGA-GCTGATGATGGCCTTTGCCCTCTG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5674646 37 + 108171978 CCTTATGAAGGCA-GGTGACGCTGGCCTTTGCCCTGTG i micMur3.chr7 I 158 C 0 s otoGar3.GL873526 36263575 37 - 42659167 CTTTATGAAGAGA-GCTGACTCTGGCCTTTGGCCCCTG i otoGar3.GL873526 I 10 C 0 s mm10.chr15 82782204 38 + 104043685 CCTTATAAAGGGATGCCAGGGTTGCCCTTTGTCCTCTG i mm10.chr15 I 2 I 7845 s canFam3.chr10 46076223 33 - 69331447 CTTTCTAAAGGGA-GCTGAGACCGGCCTTTGCCC---- i canFam3.chr10 I 8 C 0 s dasNov3.JH570235 49708 37 + 1056298 CTTTAATAAGGGG-CCAGGACCTGACCCTCGCCCTCAG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=336970.000000 s hg38.chr22_GL383582v2_alt 54803 32 + 162811 ------CTGT---GAGTGAACCTGCTGTGTTGACTGTGCTG s panTro5.chr22 28835041 32 + 37823149 ------CTGT---GAGCCAGCCTGCTGTGTTGACTGTGCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41109373 32 + 50109623 ------CTGT---GAGTGAACCTGCTGTGTTGACTGTGCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3131814 32 + 4464012 ------CTGT---GAGCCAGCCTGCTGTGTTGACTGTGCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106627095 32 - 115148730 ------CTCT---GAGCCAACCTGCTGTGTTGACTGTGCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84237348 32 + 92844088 ------CTGT---GAGCCAACCTGCTGTTTTGATTGTACTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87582600 32 - 96509753 ------CTGT---GAGCCAACCTGCTGTTTTGATTGTACTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7074312 32 - 13098629 ------CTGT---GAGCCAACCTGCTGTTTTGATTGTACTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4041598 32 - 4483953 ------CTGT---GAGCCAATCTGCTGTTTTGATTGTACTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24671629 32 + 33263144 ------CTGT---GAGCCAACCTGCTGTTTTGATTGTACTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13935813 32 - 14338769 ------CTGT---GAGCCAATCTGCTGTTTTGATTGTACTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 889882 32 + 1946073 ------CTGT---GAGCCAACCTGCTGTGTTGATTGTACTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1916974 32 - 2117846 ------CTGT---GAGCCAACCTGCTCTGTTGAATGTGCAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8833581 32 - 16357246 ------CTGT---GAGCCAACCTGCTCTGTTGACTGTGCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1309279 32 - 1807191 ------CTGT---GAGCCAATCTACTGTGTTGACTGTGCTG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5674683 32 + 108171978 ------CTGT---GAGCCAACTCGTTGTGTTGACTGTGCTG i micMur3.chr7 C 0 I 13510 s otoGar3.GL873526 36263612 32 - 42659167 ------CTGT---GAGGCAACATGTTGTGTTGACTGTGCTG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46076256 29 - 69331447 ---------T---GAGTCAATATGTCAGGGCGACAGTGCTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 49745 30 + 1056298 CACAATCTGTTTGGAACCAA-----------GATTGTACCA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82782242 7845 + 104043685 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=3582290.000000 s hg38.chr22_GL383582v2_alt 54835 422 + 162811 CCAGTG---GCAGAGTCAGGC---CAGG-GC------------AG------------GTATGGGCTGCTCCAGAGGTCCTTGCCGCTGCTTCCTGCTCCAGGCCCTTACCCAGGGTAGGGTGGTA-GAAAGGCCTGGTCGGAGAAGTca--------------------cccc--ctctccccactccaagctccccaagcccac-acAGGCTTCTGGGATAA--CCAGGGTCTC---AGTGGACCCGGCCATCCACCTCCCAGCTAGGCTCATACACCCTAATGTAGTCACAAC-CCCTCCTCCA-GAACATGACCTTGCCCTTTCCCTACCCCCACCTGCCCACTCCAGAGTGACCTTCAGCACCCTTATCTGTCACTGGCACTTACCTGGGGCCTTAG---AGCTCCTGATGATGAGTGGCATCATGG---------GCCTGGTCCCTTCACTTCACCT--TGCACTCTTGACATGCACAGACGCTATGCACACA s panTro5.chr22 28835073 424 + 37823149 CCAGTG---GCAGAGTCAGGC---CAGG-GC------------GG------------GTATGGGCTGCTCCAGAGGTCCTTGCCGCTGCTTCCTGCTCCAGGCCCTTACCCAGGGTAGGGTGGTA-GAAAGGCCTGGTCGGAGAAGTCA--------------------CCCCCTCTCTCCCCACTCCAAGCTCCCCAAGCCCGC-ACAGGCTTCTGGGATAA--CCAGGGTCTC---AGCGGACCCGGCCATCCACCTCCCAGCTAGGCTCATACACCCTAATGTAGTCACAAC-CCCTCCTCCA-GAACATGGCCTTGCCCTTTCCCTACCCCCACCTGCCCACTCCAGAGTGACCTTCAGCACCCTTATCTGTCACTGGCACTTACCTGGGGCCTTAG---AGCTCCTGATGATGAGTGGCATCATGG---------GCCTGGTCCCTTCACTTCACCT--TGCACTCTTGACATGTACAGATGCTATGCACACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41109405 421 + 50109623 CCAGTG---GCAGAGTCAGGC---CAGG-GC------------GG------------GTATGGGCTGCTCCAGAGGTCCTTGCCGCTGCTTCCTGCTCCAGGCCCTTACCCAGGGTAGGGTGGTA-G---------------------ANNNNNNNNNNNNNNNNNNNNCCCC--CTCTCCCCACTCCAAGCTCCTGAAGCCTGC-AAAGCCTTCTGGGATAA--CCAGGGTTTC---AGTGGACCCGGCCATCCACCTCCCAGCTAGGCTCATACACCCTAATGTAGTCACAAC-CCCTCCTCCA-GAACATGGCCTTGCCCTTTCCCTACCCCCACCTGCCCACTCCAGAGTGACCTTCAGCACCCTTATCTGTCACTGGCACTTACCTGGGGCCTTAG---AGCTCCTGATGATGAGTGGCATCATGG---------GCCTGGTCCCTTCACTTCACCT--TGCACTCTTGACATGCACAGACGCTATGCACACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3131846 419 + 4464012 CCAGTG---GCAGAGTCAGGC---CAGG-GT------------GG------------GTATGGGCTGCTCCAGAGGTCCTTGCCCCTGCTTCCTGCTCCAGGCCCTTACCCAGGGTAGGGTGGTA-GAAAGGCCTGGTCGGAGAAGTCA---------------------CCC--CCCTCCCCACTCCAAGCTCCCCAAGCCCGC-ACAGGCTTCT-GGATAA--CCAGGGTCTC---AGTGGACCCGGCCATCCACCTCCCAGCTAGGCTCATACACCCTAATGTAGTCACAAC-CCCTCCTCCA-GAACATGGCCTTGCCCTTTCCCTA-CCCCACCTGCCCATTCCAGAGTGGCCTTCACCACCCTTATCTGTCACTGGCACTTACCTGGGGCCTTAG---AGCTCCTGATGATGAGTGGCATCACGG---------GCCTGGTCCCTTCACTTCACAC--TGCACTCTTGACATGCACAGACGCTATGCACACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106627127 424 - 115148730 CCAGTGGGTGCAGGGTCAGGC---TAGG-GT------------GG------------GTAAGGGCTGCTCCAGAGG---CTGCCCCTGCTTCCCGCTCCAGGCCCTTACCCAGGGTAGGCCGGTG-GAGGGGCCTGGTCGGAGAAGTCA--------------------CCCC--CTCTCCCCACTCCAAGCTCCCGAAGCCCAC-ACAGGATTCTGGGATAA--GCAGGGTTTC---AGTGGACCTGGCCATCCACCCCCCAGCTAGGCTCATACACCCTAATGTGGTCACAAC-CCCTCCTCCA-GAACATGGCCTTGCCCTTTCCTTACCCCCACCTGCCCATTCCAGAGTGACCTTCAACACCCTTATCTGTCACTGGCACTTACCTGGGGCTTTAGGA-AGCTCATGATAATCAGAGGCGCCATGG---------GCCTGGTCCCTTCACTTCACAC--TGCACTCTTGACATGCACAGACGCTATGCATACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84237380 426 + 92844088 CCAGTGGGTACAGGGTCAGAC---CAGG-GC------------GG------------GTAGGGGCTGCTCCAGAGGCCCTTGCCCCTGCTGCCCGCTCCAGGCCCTTACCCAGGGTAGGGTGGTG-GAGGGGCCTGGTTGGAGAAGTCA--------------------CTCC--CTCTCCCCACTCCCAGCTTCTCAAGCCCGC-ACAGGCTTCTGGGATAA--CCAAGGTCTC---ATTGCACCCTGCCATCCACCTCTCTGCTAGGCTCATACACCCTAATGTGGTCACAAC-CCCTCCTCCA-GAACATGGCCTTCCCCTTTCCTTA-CCCCACCTACCCGTTCCAGAGTGGCCTTTACCACCCTTATCTGTCACTGGCACTTACCTGGGGCCTTAGGG-AGCTCATGATGATCAGAGGCGCCATGG---------GCCTGGTCCCTTCGCTTCACAC--TGCACTCTTGACATGCACAGACGCTATGCACACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87582632 426 - 96509753 CCAGTGGGTACAGGGTCAGGC---CAGG-GC------------GG------------GTAGGGGCTGCTCCAGAGGCCCTTGCCCCTGCTGCCCGCTCCAGGCCCTTACCCAGGGTAGGGTGGTG-GAGGGGCCTGGTTGGAGAAGTCA--------------------CTCC--CTCTCCCCACTCCCAGCTTCTCAAGCCCGC-ACAGGCTTCTGGGATAA--CCAAGGTCTC---ATTGCACCCTGCCATCCACCTCTCTGCTAGGCTCATACACCCTAATGTGGTCACAAC-CCCTCCTCCA-GAACATGGCCTTCCCCTTTCCTTA-CCCCACCTACCCGTTCCAGAGTGGCCTTTACCACCCTTATCTGTCACTGGCACTTACCTGGGGCCTTAGGG-AGCTCATGATGATCAGAGGCGCCATGG---------GCCTGGTCCCTTCGCTTCACAC--TGCACTCTTGACATGCACAGACGCTATGCCCACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7074344 424 - 13098629 CCAGTGGGTACAGGGTCAGGC---CAGG-GT------------GG------------GTAGGGGCTGCTCCAGAGGTCCTTGCCCCTGCTGCCCGCTCCAGGCCCTTACCCAGGGTAGGGTGGTG-GAGGGGCCTGGTTGGAGAAGTCA--------------------CTCC--CTCTCCCCACTCCCAGCTTCTCAAGCCCGC-ACAGGCTTCTGGGATAA--CCAAGGTCTC-----TGCACCCTGCCATCCACCTCTCTGCTAGGCTCATACACCCTAATGTGGTCACAAC-CCCTCCTCCA-GAACATGGCCTTCCCCTTTCCTTA-CCCCACCTACCCGTTCCAGAGTGGCCTTTACCACCCTTATCTGTCACTGGCACTTACCTGGGGCCTTAGGG-AGCTCATGATGATCAGAGGCGCCATGG---------GCCTGGTCCCTTCGCTTCACAC--TGCACTCTTGACATGCACAGACGCTATGCACACC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4041630 426 - 4483953 CCAGTGGGTACAGGGTCAGGC---CAGG-GC------------GG------------GTAGGGGCTGCTCCAGAGGTCTTTGCCCCTGCTGCCCGCTCCAGGCCCTTACCCAGGGTAGGGTGGTG-GAGGGGCCTGGTTGGAGAAGTCA--------------------CTCC--CTCTCCGCTGTCCCAGCTTCTCAAGCCCGC-ACAGGCTTCTGGGATAA--CCAAGGTCTC---ATTGCACCCTGCCATCCACCTCTCTGCTAGGCTCATACACCCTAATGTGGTCACAAC-CCCTCCTCCA-GAACATGGCCTTCCCCTTTCCTTA-CCCCACCTACCCGTTCCAGAGTGGCCTTTACCACCCTTATCTGTCACTGGCACTTACCTGGGGCCTTAGGG-AGCTCATGATGATCAGAGGCGCCATGG---------GCCTGGTCCCTTTGCTTCACAC--TGCACTCTTGACATGCACAGACGCTATGCACACC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24671661 426 + 33263144 CCAGTGGGTACAGGGTCAGGC---CAGG-GC------------GG------------GTAGGGGCTGCTCCAGAGGTCTTTGCCCCTGCTGCCCGCTCCAGGCCCTTACCCAGGGTAGGGCGGTG-GAGGGGCCTGGTCGGAGAAGTCA--------------------CTCC--CTCTCCCCACTCCCAGCTTCTCAAGCCCGC-ACAGGCTTCTGGGATAA--CCAAGGTCTC---AGTGCACCCTGCCATCCACCTCTCTGCTAGGCTCATACACCCTAATGTGGTCACAAC-CCCTCCTCCA-GAACATGGCCTTCCCCTTTCCTTA-CCCCACCTACCCATTCCAGAGTGGCCTTTACCACCCTTATCTGTCACTGGCACTTACCTGGGGCCTTAGGG-AGCTCATGATGATCAGAGACGCCATGG---------GCCTGGTCCCTTCACTTCACAC--TGCACTCTTGACATGCACAGACGCTATGCACACC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13935845 426 - 14338769 CCAGTGGGTACAGGGTCAGGC---CAGG-GC------------GG------------GTAGGGGCTGCTCCAGAGGTCTTTGCCCCTGCTGCCCGCTCCAGGCCCTTACCCAGGGTAGGGTGGTG-GAGGGGCCTGGTTGGAGAAGTCA--------------------CTCC--CTCTCTGCTCTCCCAGCTTCTCAAGCCCGC-ACAGGCTTCTGGGATAA--CCAAGGTCTC---ATTGCACCCTGCCATCCACCTCTCTGCTAGGCTCATACACCCTAATGTGGTCACAAC-CCCTCCTCCA-GAACATGGCCTTCTCCTTTCCTTA-CCCCACCTACCCATTCCAGAGTGGCCTTTACCACCCTTATCTGTCACTGGCACTTACCTGGGGCCTTAGGG-AGCTCATGATGATCAGAGGCGCCATGG---------GCCTGGTCCCTTCGCTTCACAC--TGCACTCTTGACATGCACAGACGCTATGCACACC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 889914 427 + 1946073 CCACTGGGTACAGGGTCAGGC---CAGG-GT------------GG------------GTAGGGGCGGCTCCAGAGGTCCTTGCTCCTGCTGCCCGCTCCAGGCCCTTACCCAGGGTAGGGTGGTG-GAGGGGCCTGGTCGGAGAAGTCA--------------------CTCC--CTCTCCCCACTCCCAGCTTCTGAAGCCCGC-ACAGGCTTCTGGGATAA--CCAAGGTCTC---AGTGGACCCTGCCATCCACCTCCCTGCTAGGGTCATACACCCTAATGTGGTCACAAC-CTCTCCTCCA-GAACATGACCTTCCCCTTTCCTTA-CCCCACCTACCCGTTCCAGAGTGGCCTTCACCACCCTTATCTGTCACTGGCACTTACCTGGGGCCTTAGGGAAGCTCATGATGATCAGAGGCGCCGTGG---------GCCTGGTCCCTTCACTTCACAC--TGCACTCTTGACATGCACAGACGCTATGCACACC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1917006 395 - 2117846 CCAGTGGGTTCAGGGTCAGGC---CAGG-GC------------AG------------GTAGGGGCCGCACCAAAGGTCCTTGTCCCAGCTG-------------TTTACCCAGGGTAGGGTGGTG-GAGGGGACTGGTGGGAGAAGTCA--------------------CTCC------------TCCCAACTCCTCAAGCCCTC-ACAGTCTTCTGGAATAA--CCAGGGTCTC---AGAGGACCCTGCCATCTGCCTCCCTGCTAGGCTCATGTG-CCTTTTGTGGTCACAATACCCTCCTCCA-------GATCTTGCCCTTCCCTCA-CCCAACCTGCCGGTTCCAGAGTGGCCTTCACCACCCTTGTCTGTCACTGGCACTCACCTGGGGCCTTGGG--AGTTCATGATGATCAGAGGCG-CACAG---------ACCTGGTCCCTTCACTTCACAC--TCCTCTCTTGACATGCACAGACGCTACACACATG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8833613 404 - 16357246 CCAGTGGGTGCAGGGTCCGGC---CAGG-GC------------AG------------GTACGGGCTGCACCAAAGGTCCTTGTCCCAGCTG-------------TTTACCCAGGGTAGGGTGGTA-GAGGGGCCTGGTGGGAGAAGTCA--------------------CTCC--CTT-------TCCCAATTCCCCAAGCCCTC-ACAGGCTTCTGGGATAA--CCAGGGTCTC---AGTGGACCCTGCCATCCCCCTCCCTGCTAGGCTCACGTGCCCTTTTGTGGTCACAAC-CCCTCCTCCA-GAACATGATCTTGCCCTTTCCTCA-CCCCACCTGCCCGTTCCAGAGTGGCCTTCACCACCTTTGTCTGTCAGTGGCACTCACCTGAGGCCTTGGG--AGTTCATGATGATCAGAGGTG-CACGG---------GCCTGGTTCCTTCACTTCACAC--TGCACTCTTGACATGCATAGACGCTAGGCACAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1309311 393 - 1807191 CCAGTGGGTTCAGGGTCAGGC---CAGG-GC------------AG------------GTAGGGGCCGCACCAAAGGTCCTTGTCCCAGCTG-------------TTTACCCAGGGTAGGGTGGTA-GA-----------GGAGAAGTCA--------------------CTCC--CTT-------TCCCAACTCTCCAAGCCCTC-ACAGGCTTCTGGGATAA--CCAGGGTCTC---AGTGGATCCTGCCATCCGCCTCCCTGCTAGGCTCACGTGCCCTTTTGTGGTCACAAC-CCCTCCTCCA-GAACATAATCTTGCCCTTTCCTCA-CCCCACCTGCCCGTTCCAGAGTGGCCTTCACCACCCTTGTCTGTCACTGGCACTCACCTGGGGCCTTGGG--AGTTCATGATGATCAGAGGCG-CACGG---------GCCTGGTCTCTTCACTTCACCC--TGCACTCTTGACATGCATAGACGCTATGCACACG i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36263644 417 - 42659167 CCAGAGGGTACAGAGCCAGGG---TAGG-GCCAGGCAGGGCAGGT------------GCAGGGATGGGTCCAGAGGTCCTTGTCCCTGCTTCCCTTTCCAGGCACTTACCCAGGAGATGG------AAGAGGCCTGGCAGGAGAATTAG------------------GGGCCC--CTCTTCATACCTCTGACTCC-CAGCCCTAT-ATAGGCTCTTGGGAGAG--CCC-TGTCTG---ACCTGACCCTGGCACCCAGCTCTCC--------------CACTAATGTGGTCCTGAT-CTCTCC-CCA-GAACTTTTGCTTGTCCTTACCTCA-CTTCACCTGTCTGCTCCTGAGTGACGTCTGCCATGCTTGTCTGTCATCCCTAGTTGCCTTGGGGTTTACAG-AGGTTCTGATGATCAAAGGAACCAAGG---------GACAAGTCACTTCACTTCATGC--TGCACACAGTACATGCACAGACACTCAG-ACACA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46076285 394 - 69331447 CCAGAGGGTGCAGGGAGGGGT---CAGGTGC------------AGGGGAGTTCAGGTGCAGGGGTGACCACAGGAGTCC-TGTGCCCGCTGCACTCTCCGGGTGTTTACCCACAGTAGTGGGGTC-AGG------GGCGGGGAGAGGCT--------------------CACC--TTCA------GCCCGACGCTGCAGCTCTGCGACAGGCCCCGGGGAGAATCCCGGGGTCCCTGGACTTGATTCTGCCACCACCCGTCATGTTAGGCTCACACCCCACAACGTGGTCACAGC-CTTGTCTCCGGGAACGCGTTCTCGCCTT---CTCA-CGTTACCTGCTTCCTCCTGTGCGGTTTT--ACTTCCAAGTTTGTTACTAGCACTTGCCCAGTGCCGTGGGG-ACGTCACAGC-ATCAGAGGGACTGTGG---------GGGGG---------------------------TGACGTTCTCAG-CGTTGT------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 49775 382 + 1056298 ---------GCAGGGAAAGCCAATCAGT-GTCA----------GG------------GGTGGGGCAGCCC--AAGGTCATTGCTCCTCTTAC-----CCAAGCACCTTCCCAGGTTGGGTAAGAGCGGGAGACCTGGAAGGAGAAGCCC--------------------TCCC--------------CCAGGCCCTAGTGCTC-C-GCGGGCTGTTAGGGGGG--TC--GGGCTG---ACTTGACCCTGC------------------------ACCCGCTGATGTGTTCACAAG-CTCGCCCTCA-GCACACGCTCTTGCCCTGCCCAC--CCTCACCTGCTC-CTCTGGAGTGGACTTCACCACCAAGGTGTGTCAGCCACCCTCGTC-AGAGCCTCAGGG-AGCTCGTCACGGTCAGCAGAGCCCTGGAGGACCTCCACCTGGCCCC--CAGTGCACATCGTGCACACTCAACAAGCTCACTCACCA-ACACACA i dasNov3.JH570235 C 0 I 762 e mm10.chr15 82782242 7845 + 104043685 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I a score=381100.000000 s hg38.chr22_GL383582v2_alt 55257 56 + 162811 CCTGATGGTGCACAGATCTCTTGTCCACTCCCAGACACTTGTCCACTTGTTCACAC s panTro5.chr22 28835497 56 + 37823149 CCTGATGGTGCACAGATCTCTTGTCCACTCCCAGACACTTGTCCACTTGTTCACAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41109826 56 + 50109623 CCTGATGGTGCACAGATCTCTTGTCCACTCCCAGACACTTGTCCACTTGTTCACAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3132265 48 + 4464012 CCTGATGGTGCACAGATCTCTTGTCCATTCCCAGA--------CACTAATTCACAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106627551 48 - 115148730 CCTGATGGTGCACAGATCTCTTGTCCACTCCCAGA--------CACTTGTTCACAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84237806 48 + 92844088 CCTGATGGTGCACAGACCTCTTGTCCACTCCCAGA--------CACTTGTCCACAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87583058 48 - 96509753 CCTGATGGTGCACGGACCTCTTGTCCACTCCCAGA--------CACTTGTCCACAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7074768 48 - 13098629 CCTGATGGTGCACAGACCTCTTGTCCACTCCCAGA--------CACTTGTCCACAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4042056 48 - 4483953 CCTGATGGTGCACAGACCTCTTGTCCACTCCCAGA--------CACTTGTCCACAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24672087 48 + 33263144 CCTGACGGTGCACAGACCTCTTGTCCACTCCCAGA--------CACTTGTCCACAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13936271 48 - 14338769 CCTGATGGTGCACAGACCTCTTGTCCACTCCCAGA--------CACTTGTCCACAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 890341 44 + 1946073 CCTGATGGTGCACAGACCTCTTGCCCACTCC------------CACTTGTCCACAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1917401 56 - 2117846 CCTGATGGTGCACACACCTCTTCTACACTCCCAGACTCTCGTCCCCTTGTTCACAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8834017 56 - 16357246 CCTGATGGTGCACACACCTCTTCTACACTCCCAGACTCTTGTCCCCTTGTTCACAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1309704 56 - 1807191 CCTGATGCTGCACACACCTCTTCTACACTCCCAGACTCTTGTCCCCTTGTTCACAT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36264061 50 - 42659167 TCTGAT--CACACACACCTCTGGTCCATGGCcagacgcc----cacatgctcacac i otoGar3.GL873526 C 0 T 4815 s canFam3.chr10 46076679 8 - 69331447 -----------------------CTCACTTC------------------------- i canFam3.chr10 C 0 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I a score=2189196.000000 s hg38.chr22_GL383582v2_alt 55313 309 + 162811 TTGCAGGGACACGATTACACATGCAGAAAATcacccacacaaagacaatattcacacatacacagactcacactgacactcagggcacacattctctctca-------------cacacaccagtcacacacacataca------gacCCGGCACCAAGTACCCCACTTCCCAGCCATGCCCGAGGTTTCCTGGATGGGACCTCTCCTGTCCAGAGGCTGCTCCCGG------TGAGCCTCAAAGCTGTCACATGGATCCCAGCTCAG----------CCCACATT-CTGGGCTCTGGCCGGGCC--ATGACTTCCTGTT-------------TGCAACAGGGCTGTTCCCAGAGCTCCC s panTro5.chr22 28835553 309 + 37823149 TTGCAGGGACACGATTACACATGCAGAAAATcacccacacaaagacaatattcacacatacacagactcacactgacactcagagcacacattctctctcc-------------cacacaccagtcacacacacataca------gacCCGGCACCAAGTACCCCACTTCCCAGCCATGCCCGAGGTTTCCTGGATGGGACCTCTCCTGTCCAGAGGCTGCTCCCAG------TGAGCCTCAAAGCTGTCACGTGGATCCCAGCTCAG----------CCCACATT-CTGGGCTCTGGCCGGGCC--ATGGCTTCTTGTT-------------TGCAACAGGGCTGTTCCCAGAGCTCCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41109882 309 + 50109623 TTGCAGGGACACGATTACACATGCAGAAAATcacccacacaaagacaatattcacacatacacagactcacactgacactcagggcacacattctgtctcc-------------cacacaccagtcacacacacataca------gacCCGGCACCAAGTACCCCACTTCCCAGCCATGCCCGAGGTTTCCTGGATGGGACCTCTCCTGTCCAGAGGCTGCTCCCAG------TGAGCCTCAAAGCTGTCACGTGGATCCCAGCTCAG----------CCCACATT-CTGGGCTCTGGCCGGGCC--ATGGCTTCTTGTT-------------TGCAACAGGGCTGTTCCCAGAGCTCCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3132313 300 + 4464012 TTGCAGGGACACGATTACACACCCAGAAAATGACCTACACGCAGACAATACTCACATGCACGCAGACTCACACTGA----CAGGGCACACGCATTCTCTCA-------------TA---ACCATT--CACACACATACA------GACCCGGCACCAAGTACCCCACTCCCCAGCCATGCCCGAGGTTTCCTGGATGGGACCTCTCCTGTCCAGAGGCTGCTCCCAG------TGAGCCTCAAAGCTGTCACGTGGATCCCAGCTCAG----------CCCACATT-CTGGGCTCTGGCCGGGCC--ATGGCTTCTTGTT-------------TGCAACAGGGCTGTTCCCAGAGCTCCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106627599 301 - 115148730 TTGCAGGGACACGATTACACACCCAGAAAATCACCTCCACGCAGACAATACTCACATGCACACAGACTCACACTGA----CAGGGCACACACATTCTCTCA-------------CA---ACCATT--CACACACATACA------GACCTGGCACCAAGTACCGTGCTTCCCAGCCATGCCCGAGGTTTCCTGGACGGGACCTCTCCTGTCCAGAGGCTGCTCCCAG------TGAGCCTCAAAGCTGTCACCTGGATCCCAGCCCAG----------CCCACATTCCTGGGCTCCGGCCTGGCC--ATGGCTTCTTGTT-------------TGCAACAGGGCTGTTCCCAGAGCTCCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84237854 295 + 92844088 TTGGAGGGACACGATcacacacccacaaaatcacccacacgaagacagtactcacgtgcacacagactcacactgacactc--ggcacacgcattgtcaca--------------------------cacacacataca------gacccagcacCAAGTACTGCGCTTCTCAGCCATGCCTGAGGTTTCCTGCGTGGGATTTCTCCTGTCCAGAGGCTGCTCCCAG------TGAGCCTCAAAGCTGTCGCCTGGATCCCAGCCCAG----------CCCGCATTCCTGGGCTCCGGCCTGGCC--ATGGCTTCTTGTT-------------TGCAACAGGGCTGTTCCCAGAGCTTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87583106 293 - 96509753 TTGGAGGGACACGATcacacacccacaaaatcacccacacgaagacagtactcacgtgcacacagactcacactgacactc--ggcacacgcattgtcaca--------------------------cacacacataca------gacccagcacCAAGTACTGGG--TCTCAGCCATGCCTGAGGTTTCCTGCGTGGGATTTCTCCTGTCCAGAGGCTGCTCCCAG------TGAGCCTCAAAGCTGTCGCCTGGATCCCAGCCCAG----------CCCGCATTCCTGGGCTCCGGCCTGGCC--ATGGCTTCTTGTT-------------TGCAACAGGGCTGTTCCCAGAGCTTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7074816 295 - 13098629 TTGGAGGGACACGATcacacacccacaaaatcacccacacgaagacagtactcacgtgcacacagactcacactgacactc--ggcacacgcattgtcaca--------------------------cacacacataca------gacccagcacCAAGCACTGCGCTTCTCAGCCATGCCTGAGGTTTCCTGCGTGGGATTTCTCCTGTCCAAAGGCTGCTCCCAG------TGAGCCTCAAAGCTGTCGCCTGGATCCCAGCCCAG----------CCCGCATTCCTGGGCTCCGGCCTGGCC--ATGGCTTCTTGTT-------------TGCAACAGGGCTGTTCCCAGAGCTTCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4042104 295 - 4483953 TTGCAGGGACACGATcacacacccacaaaatcacccacacgaagacagtactcacatgcacacagactcacactgacactc--ggcacacgcattgtcaca--------------------------cacacacataca------gacccagcacCAAGTACTGCACTTCTCAGCCATGCCTGAGGTTTCCTGCGTGGGATTTCTCCTGTCCAGAGGCTGCTCCCAG------TGAGCCTCAAAGCTGTCACCTGGATCCCAGCCCAG----------CCTGCATTCCTGGGCTCCGGCCTGGCC--ATGGCTTCTTGTT-------------TGCAACAGGGCTGTTCCCAGAGCTTCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24672135 295 + 33263144 TTGCAGGGACACGATcacacacccacaaaatcacccacacgaaaacagtactcacatgcacacagactcacactgacactc--ggcacacgcattgtcaca--------------------------cacacacataca------gacccagcacCAAGTACCGCGCTTCTCAGCCATGCCTGAGGTTTCCTGCGTGGGATTTCTCCTGTCCAGAGGCTGCTCCCAG------TGAGCCTCAAAGCTGTCACCTGGATCCCAGCCCAG----------CCCGCATTCCTGGGCTCCGGCCTGGCC--ATGGCTTCTTGTT-------------TGCAACAGGGCTGTTCCCAGAGCTTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13936319 295 - 14338769 TTGCAGGGACACGATcacacacccacaaaatcacccacacgaagacagtactcacatgcacacagactcacactgacactc--ggcacacgcattgtcaca--------------------------cacacacatgca------gacccagcacCAAGTACTGCGCTTCTCAGCCATGCCTGAGGTTTCCTGCGTGGGATTTCTCCTGTCCAGAGGCTGCTCCCAG------TGAGCCTCAAAGCTGTCACCTGGATCCCAGCCCAG----------CCCGCATTCCTGGGCTCCGGCCTGGCC--ATGGCTTCTTGTT-------------TGCAACAGGGCTGTTCCCAGAGCTTCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 890385 295 + 1946073 TTGCAGGGACACGATCACGCACCCACAAAATCACCCACACAAAGATAGTACTCACATGCACACAGACTGACACTGACACTC--GGCACACGCATTCTGTCT--------------------------CTCACACGTACA------GACCCAGCACCAAGTACCGCGCTTCTCAGCCATGCCTGAGGTTTCCTGGGTGGGACCTCTCCTGCCCAGAGGCTGCTCCCAG------TGAGCCTCAAAGCTGTCACCTGGATCCCAGCCCAG----------CCTGCATTCCTGGGCTCCGGCCTGGCC--ATGGCTTCTTGTT-------------TGCAACAGAGCTGTTCCCAGAGCTTCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1917457 301 - 2117846 GTGCAGGGATATATTCACATACCCACAAATCCACCCACATGCAGACAATGCTCACATGCACACAGACTCACACT------CAGAGTACATGCATTCTCACcacacacacacacacacacaca-----cacacacacaca------cacacaGCACCAAGTACCCTGCTTCTCAGCCATGCCT----------------GGCCTCTCCTGTCCAGAGGCTGGTCCCAGTGAGGCTGAGGCTCAAGGCTGTCACCTGGCTCCCAGCCGAG----------CCCACATTCCGGGGCTCCAGCCTGGCC--ATGGCCTCTCTCT-------------TGCAACAGGGCTGTTCCCAG-ACTCCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8834073 293 - 16357246 GTGCAGGGACATATTCACATACTCACAAAACCACCCACACGCAGACAATGCTCACATGCACACAGACTCACACC------CAGAGCACATGCATTCTCTCT-------------cacacaca-----cacacacacaca------caACCAGCACCAAATAGCCTCATTCTCAGCCAAGCCC----------------TACCTCTCCTGTCCAGAGGCTGTTCCCAG------TAAGGCTCAAGGCTATCACCTGGTgcccagcccagcccagcccaccccaCATTCCTGGACTCCAGCCTGGCC--ATGGCTTTTCGCT-------------TGCAACAGGGCTGTTCCCAGAACTCCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1309760 280 - 1807191 GTGCAGGGACATATTcacatacccacaaaaccacccacacacagacaatgctcacatg--cacagactcacact------cagagcacatgcattctctca-------------cac-caca-----tacacacacacC------CCCTCAGCACCAAGTAGCCTGCTTCTCAGCCATGCCT----------------GACCTCTCCTGTCCAGAGGCTGCTCCCAG------TAAAGCTCAAGGCTGTCACCTGGCTCCCAGCCCAG----------CCCACATTCCTGGACTCCAGCCTGGCC--ACGACCTCTTGCT-------------TGCAACAGGGCTGTTCCCAGAATTCCC i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46076687 257 - 69331447 --------ACACGAGTTCACACTCACGGAACCACGCAACCACAA--AGCGCTCACACATTCACCGACAC-----GACCCACAGGACTGACACACGATCACG-----------GGCACGCACG-----TACACACCCACACTCTGGGAGCCAGCGCCAAGGTCCCTGGTCCCCAG----------------------GGG-------CTGCCTGGAGGCTGCCTGCGG------TGG----------TGGCGAGTGG----------------------C-----TTCCTTGGCGCTGGCCCGGCCCGGTGAGTGTGCGTTGGGGGGCGGGGGGGGCAGCATGGCTGTTTTCAGGGCTCCC i canFam3.chr10 C 0 T 4986 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I a score=981814.000000 s hg38.chr22_GL383582v2_alt 55622 113 + 162811 AGTTGGTAGCCTGAAGGCCCTTGCCCCAGCCTGTGACAGCATCCTCCAG-GGCTGCCTGAGGGTCgtcattctccactgcttcctggcctccatgtttctgattagaaatctgg s panTro5.chr22 28835862 113 + 37823149 AGTTGGTAGCCTGAAGGCCCTTGCCCCAGCCTGTGACAGCATCCTCCAG-GGCTGCCTGAGGGTCgtcattctccactgctttctggcctccatgtttctgattagaaatctgg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41110191 113 + 50109623 AGTTGGTAGCCTGAAGGCCCTTGCCCCAGCCTGTGACAGCATCCTCCAG-GGCTGCCTGAGGGTCgtcattctccactgctttctggcctccatgtttctgattagaaatctgg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3132613 112 + 4464012 AGTTGGTAGCCTGAAGG-CCTTGCCCCAGCCTGTGACAACATCCTCCAG-GGCTGCCTGAGGGTCGTCCTCCTccactgctttctggcctccatgtttctgattagaaatctgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106627900 112 - 115148730 AGTTGGTAGCCTGAAGG-CCTTGCCCCAGCCTGTGACAACATCCTCCAG-GGCTGCCTGAGGGCCGTCGTCCcccactgctttctggcctccatgtttctgattagaaatctgg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84238149 113 + 92844088 AGTTAGTAACCTGAAGGCCCTTGCCCCAGCCTGTGACAACAtccttcag-ggctgcctgagggctgtcgtcctccactgctttctggcctccatgtttctgattagaaatctgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87583399 113 - 96509753 AGTTAGTAACCTGAAGGCCCTTGCCCCAGCCTGTGACAACAtccttcag-ggctgcctgagggctgtcgtcctccactgctttctggcctccatgtttctgattagaaatctgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7075111 113 - 13098629 AGTTAGTAACCTGAAGGCCCTTGCCCCAGCCTGTGACAACATCCTTCAG-GGCTGCCTGAGGGCCgtcgtcctccactgctttctggcctccatgtttctgattagaaatctgg i macNem1.NW_012012688v1 C 0 I 8092 s cerAty1.NW_011999588v1 4042399 113 - 4483953 AGTTAGTAACCTGAAGGCCCTTGCCCCAGCCTGTGACAACATCCTTCAG-GGCTGCCTGAGGGCCgtcgtcctccactgctttctggcctccatgtttctgattaggaatctgg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24672430 113 + 33263144 AGTTGGTAACCTGAAGGCCCTTGCCCCAGCCTGTGACAACATCCTTCAG-GGCTGCCTGAGGGCCgtcgtcctccactgctttctggcctccatgtttctgattagaaatctgg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13936614 113 - 14338769 AGTTAGTAACCTGAAGGCCCTTGCCCCAGCCTGTGACAACATCCTTCAG-GGCTGCCTGAGGGCCGTtgtcctccactgctttctggcctccatgtttctgattagaaatctgg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 890680 110 + 1946073 AATTGGTAACCTGAAGGCCTTTGCACCAGCCTGTG---ACATCTTTCAG-GGCTGCCTGAGGGCCgtcatcctccactgctttctggcctccatgtttctgattagaaatctgg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1917758 114 - 2117846 AGTTGGTAGTCTGAAGGCCCTTGCCCCAGCCTGTGAAGACATCCTCCAGTGGCTTCTTGAGGGCCGCTGTCCTGcactgctttctggcctccatgtctttgattagaaatttgg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8834366 114 - 16357246 AGTTGGTATCCTGAAGGCCCTTGCCCCAGCCTGTGACAACATCCTCCAGTGGCTTCCTAAGGGCCACTGTCCTCCGCTGCTTTCTGGCCTCCATGTCTCCGATTAGAAATCTGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1310040 114 - 1807191 AGTTGGTATCCTGAAGGCCCTTGCCCCAGCCTCTGACAACATCCTCCAGTGGCTTCCTGAGGGCCGCTGTCCTCCACTGCTTTCTGGCCTCCATGTCTCTCAATAGAAATCTGG i cebCap1.NW_016107750v1 C 0 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I a score=31617.000000 s hg38.chr22_GL383582v2_alt 55735 5 + 162811 tggaa s panTro5.chr22 28835975 5 + 37823149 tggaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41110304 5 + 50109623 tggaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3132725 5 + 4464012 tggga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106628012 5 - 115148730 tggga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84238262 5 + 92844088 tggga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87583512 5 - 96509753 tggga i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4042512 5 - 4483953 tggga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24672543 5 + 33263144 tggga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13936727 5 - 14338769 tggga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 890790 5 + 1946073 tggga i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1917872 5 - 2117846 tggta i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8834480 5 - 16357246 TGTAA i saiBol1.JH378157 C 0 I 8703 s cebCap1.NW_016107750v1 1310154 5 - 1807191 TGGTA i cebCap1.NW_016107750v1 C 0 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I e macNem1.NW_012012688v1 7075224 8092 - 13098629 I a score=25839.000000 s hg38.chr22_GL383582v2_alt 55740 4 + 162811 acat s panTro5.chr22 28835980 4 + 37823149 acgt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41110309 4 + 50109623 acgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3132730 4 + 4464012 acgt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106628017 4 - 115148730 acgt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84238267 4 + 92844088 acgt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87583517 4 - 96509753 acgt i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4042517 4 - 4483953 acgt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24672548 4 + 33263144 acgt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13936732 4 - 14338769 acgt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 890795 4 + 1946073 acgt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1917877 4 - 2117846 aCAT i calJac3.chrUn_GL286373 C 0 I 10290 s cebCap1.NW_016107750v1 1310159 4 - 1807191 ACAT i cebCap1.NW_016107750v1 C 0 I 13933 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I e saiBol1.JH378157 8834485 8703 - 16357246 I e macNem1.NW_012012688v1 7075224 8092 - 13098629 I a score=581202.000000 s hg38.chr22_GL383582v2_alt 55744 150 + 162811 tatggaggatcctttatttaggatatgttgcttt-----------------------tttatttttattttttctttagacagggtctcactctgttgcccgggccggagtgcagtggcaggatcatggctcactgcaatctcaacatcaagtggacctcctgcctcccaagt s panTro5.chr22 28835984 150 + 37823149 tatggaggatcctttatttaggatatgttgcttt-----------------------tttatttttattttttctttagacagggtctcactctgttgcccgggccggagtgcagtggcaggatcacggctcactgcaatctcaacatcaagtggacctcctgcctcccaagt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41110313 150 + 50109623 tatggaggatcctttatttaggatatgttgcttt-----------------------tttatttttattttttctttagacagggtctcactctgttgcccgggccggagtgcagtggcaggatcacggctcactgcaatctcaacatcaagtggacctcctgcctcccaagt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3132734 150 + 4464012 tatggaggatcctttatttaggatatgttgcttt-----------------------tttatttttattttttctttagacagggtctcactctgttgcccgggctggagtgcagtggcaggatcacggctcactgcaatctcgacatcaagtggacctcctgcctcccaagt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106628021 148 - 115148730 tatggaggatcctttgttcaggatatgttgcCtt-----------------------tt--ttttttttttttttaaagacagggtctcactctgttgcccaggctggagtgcagtggcaggatcacggctcactgtaatcttgacatcaagtagacctcctgcctcccaagt i nomLeu3.chr7b C 0 I 2076 s rheMac8.chr10 84238271 145 + 92844088 tatggaggatcctttgttcaggatatgttgACTT--AAAAAAAAAAAAAAA--------------------------agacagggtcttactctgttgcccaggctggagtgcagtggcaggatcacggctcactgcagtcgcgacctcaagtagacctcctgcctcccaagt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87583521 145 - 96509753 tatggaggatcctttgttcaggatatgttgACTT--AAAAAAAAAAAAAAA--------------------------agacagggtcttactctgttgcccaggctggagtgcagtggcaggatcacggctcactgcagtcgcgacctcaagtagacctcctgcctcccaagt i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4042521 147 - 4483953 tatggaggatcctttgttcaggatatgttgACTTaaaaaaaaaaaaaaaaa--------------------------agacagggtcttactctgttgcccaggctggagtgcagtggcaggatcacggctcactgcagtcgcgacctcaagtagacctcctgcctcccaagt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24672552 153 + 33263144 tatggaggatcctttgttcaggatatgttgACTTTaaaaaaaaaaaaaaaaaaaaaa--------------------agacagggtcttactctgttgcccaggctggagtgcagtggcaggatcacggctcactgcagttgtgacctcaagtagacctcctgcctcccaagt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13936736 143 - 14338769 tatggaggatcctttgttcaggatatgttgACTTaaaaaaaaaaaaaaaaa------------------------------agggtcttactctgttgcccaggctggagtgcagtggcaggatcacggctcactgcagtcgtgacctcaagtagacctcctgcctcccaagt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 890799 141 + 1946073 tatgaaggatcctttgttcaggatatgttgACTT------AAAAAAAAAAA--------------------------agacagggtcttactctgttgcccaggctggagtgcagtggcaggatcacggctcactgcagtcgcgacctcaagtggaccgcctgcctcccaagt i colAng1.NW_012115588v1 C 0 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I e cebCap1.NW_016107750v1 1310163 13933 - 1807191 I e saiBol1.JH378157 8834485 8703 - 16357246 I e calJac3.chrUn_GL286373 1917881 10290 - 2117846 I e macNem1.NW_012012688v1 7075224 8092 - 13098629 I a score=898494.000000 s hg38.chr22_GL383582v2_alt 55894 199 + 162811 agctgggactacaggcaccaccgagcccAAATAA-----ttttttttttgagacggagttttgctc-tgtcgcccaggtgggagtgcaatgatgcgatctcggctcactgcaacctccacctccagggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccacc-accatgcctggctgatttttT s panTro5.chr22 28836134 199 + 37823149 agctgggactacaggcacCACTGAGCCCAAATAA-----ttttttttttgagacagagttttgctc-tgtcgccctggtgggagtgcaatgatgcgatctcggctcactgcaacctccacctccagggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgcc-accatgcctggctgatttttT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41110463 199 + 50109623 agctgggactacaggcacCACTGAGCCCAAATAA-----ttttttttttgagacagagttttgctc-tgtcgccctggtgggagtgcaatgatgcgatctcggctcactgcaacctccacctccagggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgcc-accatgcctggctgatttttT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3132884 198 + 4464012 agctgggactacaggcaccaccaagcccaaataa------tttttttttgagacggagttttgctc-tgtcgcccaggcgggagtgcaatgatgcgatcttggctcactgcaacctccacctccagggttcaagcgattctcctgcctcagcctcccaagtagttgggattacaggtgtccacc-accatgcctggcTGATTTTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106630245 202 - 115148730 agctgggactacagccaccaccgagcccCAAtttttt--ttttttttttgagacggagttttgctc-tatcgcccaggctggagtgcaatgatgcgatctcggctgactgcaacctccacctccagggttcaagcgattctcctgcctcagcctcccgagtagctgggattatagacgcccacc-accatgcctggctgatttttC i nomLeu3.chr7b I 2076 C 0 s rheMac8.chr10 84238416 201 + 92844088 agctgggactacaggcacCACTGAGCCCAAATAA-----ttttgtttttgagacggagttttgctcttgtcgcccaggctggagtgtaatgacgcaatctcggctcactgcaacctctgcctccagggttcaagtgattctcctgcctcagcctccagagtagctgggattacaggcacccaccaaccatgcctggctgatttttt i rheMac8.chr10 C 0 I 7727 s macFas5.chr10 87583666 201 - 96509753 agctgggactacaggcaccactgagcccaaataa-----ttttgtttttgagacggagttttgctcttgtcgcccaggcggcagtgtaatgacgcaatctcggctcactgcaacctccgcctccagggttcaagtgattctcctgcctcagcctccagagtagctgggattacaggcacccaccaaccatgcctggctgatttttt i macFas5.chr10 C 0 I 7418 s cerAty1.NW_011999588v1 4042668 206 - 4483953 agctgggactacaggcacCACTGAGCCCAAATAAttttgttttgtttttgagacggagttttgctcttgtcgcccaggctggagtgcaatgacgcaatctcggctcactgcaacctccgcctccagggttcaagtgattctcctgcctcagcctccagagtagctgggattacaggcacccaccaaccatgcctggctgatttttt i cerAty1.NW_011999588v1 C 0 I 7106 s chlSab2.chr19 24672705 206 + 33263144 agctgggagtttaggcaccactgagcccaaataattttgttttgtttttgagacggagttttgctcttgtcgcccaggctggagtgcaatgacgcaatctcagctcactgcaacttccacctccagggttcaagtgattctcctgcctcagcctccagagtagctgggattacaggcacccaccaaccatgcctggctgatttttt i chlSab2.chr19 C 0 I 7740 s manLeu1.NW_012102031v1 13936879 206 - 14338769 agctgggactacaggcaccactgagcccaaataatttcgttttgtttttgagacggagttttgctcttgtcgcccaggctggagtgcaaggacggaatctcggctcattgcaacctctgcctccagggttcaagtgattctcctgcctcagcctccagagtagctgggattacaggcacccaccaaccatgcctggctgatttttt i manLeu1.NW_012102031v1 C 0 I 7542 s colAng1.NW_012115588v1 890940 205 + 1946073 agctgggactacaggcacCACTGAGCCCAAATAAttttgttttgtttttgagacggagttttgctcttgtcacccaggctggagtgcaatgacgcaatctcggctcactgcaaccttcgcctccagggttcaagtgattctcctgcctcagcctccagagtagctgggattacaggcacccact-accatgcctggttgttttttt i colAng1.NW_012115588v1 C 0 I 7073 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I e cebCap1.NW_016107750v1 1310163 13933 - 1807191 I e saiBol1.JH378157 8834485 8703 - 16357246 I e calJac3.chrUn_GL286373 1917881 10290 - 2117846 I e macNem1.NW_012012688v1 7075224 8092 - 13098629 I a score=1038331.000000 s hg38.chr22_GL383582v2_alt 56093 1179 + 162811 gtacaagaagtttatagaacaccaagcagatttaaccca---aagaagacgacctcaaggcatctgataattaaactccgaaaggtcaaggataaagaaaggatcctaaaagcagcaagagaaaagaaacaaataacatgcagtagagctccaatacatgacatggggcagccacctttccagtggaaaccttacaggccaggggggagtggcatgacatatttaaagtgctgaagg-aaaaaaaacttttagcctagaataacgtatctggcaaaaatatccttccaacaggaaggagaaataaagaccttcccagacaaacaaaagctgcgagatttcatcaacaccagacctatatcccacaagaaatgctaaagggagtttttcaatctgaaaaaaaaaaggatattaatgagcaagaagaaatcatctaaaggtacaaaactcactggtaatagtaagcacacagaaaaacagagtattataatactgtaattgtggtgtgtaaactactcttattttaatt----agactaaatgatgaaccaatcaaaaataataagtacttttcaagac--agacagtacagtaagacataaagaggccggacccggtggctcacgcaggtaatcccagcactttgtaaggctgaggtgggtggatcacctgagggcaggagttcgagacaagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaatttagctgggcatggtggtgggcgcctgctacccaggaggctgaggcaggagaatcggttgaacctgggaagtggaggttacagtgagctgagatcgtgccactgcactctagcctgggcaacagagcaagactttatctcaaaaacaaaaaa------agagaaacaacaaaaagttaaaaagcactaagatgaacttaaagtgtagagtttttattagtcttccttttgctttatgtttgtttacacaatcagtgttgtcatccgtttaaaataatgagttataagataatatttgcaagcctcacggcaacctcaaatcaaaaagcacacaataagtgagactgtgtctcaaaaagaaaagaagaaaaaacacacaatggatacacacacacaaaaaagcaagaaattaaatcataccaccagagaaaatcaccttcattaaaaggaagacaagg s panTro5.chr22 28836333 1181 + 37823149 gtacaagaagttcatagaacatcaagcagatttaaccca---aagaagacgacctcaaggcatctgataattaaactcccaaaggtcaaggataaagaaaggatcctaaaagcagtaagagaaaagaaacaaataacatgcagtagagctccaatacatgacatggggcagccacctttccagtggaaacgttacaggcc-ggggggagtggcatgacatatttaaactgctgaagg-aaaaaaaacttttagcctagaataacatatctggcaaaaatgtccttccaacaggaaggagaaataaagaccttcccagacaaacaaaagctgcgagatttcatcaacaccagacctatatcccacaacaaatgctaaagggagtttttcaatctg-aaaaaaaaaggatattaatgagcaagaagaaatcatctaaaggtacaaaactcactggtaatagtaagcacacagaaaaacagagtattataatactgtaattgtggtgtctaaactactcttattttaatt----agactaaatgatgaaccaatcaaaaataataagtacttttcaagac--agacagtacagtaagacataaagaggccggacccggtggctcacgcaggtaatcccagcactttgtaaggctgaggtgggtggatcacctgagggcaggagttcgagacaagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaatttagctgggcatggtggtgggcgcctgctactcgggaggctgaggcaggagaatcggttgaacctgggaagtggaggttacagtgagctgagatcgtgccactgcactctagcctgggcaacagagcaagactttatctcaaaaacaaaaaaagac--agagaaacaacaaaaagttaaaaagcactaagatgaacttacagtgtagagtttttattagtcttctttttgctttatgtttgtttacgcaatcagtgttgtcatccgtttaaaataatgagttataagataatatttgcaagcctcacggcaacctcaaatcaaaaagcacacaataagtgagactgtgtctcaaaaagaaaagaagaaaaaacacacaatggatacacacacacaaaaaagcaagaaattaaatcataccaccagagaaaatcaccttcattaaaaggaaaacaaga i panTro5.chr22 C 0 I 106 s panPan2.chr22 41110662 1180 + 50109623 gtacaagaagttcatagaacatcaagcagatttaaccca---aagaagacgacctcaaggcatctgataattaaactcccaaaggtcaaggataaagaaaggatcctaaaagcagcaagagaaaagaaacaaataacatgcagtagagctccaatacatgacatggggcagccacctttccagtggaaacgttacaggcc-ggggggagtggcatgacatatttaaactgctgaagg-aaaaaaaacttttagcctagaataacatatctggcaaaaatgtccttccaacaggaaggagaaataaagaccttcccagacaaacaaaagctgcgagatttcatcaacaccagacctatatcccacaacaaatgctaaagggagtttttcaatctg-aaaaaaaaaggatattaatgagcaagaagaaatcatctaaaggtacaaaactcactggtaatagtaagcacacagaaaaacagagtattataatactgtaattgtggtgtctaaactactcttattttaatt----agactaaatgatgaaccaatcaaaaataataagtacttttcaagac--agacagtacagtaagacataaagaggccggacccggtggctcacgcaggtaatcccagcactttgtaaggctgaggtgggtggatcacctgagggcaggagttcgagacaagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaatttagctgggcatggtggtgggcgcctgctacccaggaggctgaggcaggagaatcggttgaacctgggaagtggaggttacagtgagctgagatcgtgccactgcactctagcctgggcaacagagcaagactttatctcaaaaacaaaaaa-gac--agagaaacaacaaaaagttaaaaagcactaagatgaacttacagtgtagagtttttattagtcttctttttgctttatgtttgtttacgcaatcagtgttgtcatccgtttaaaataatgagttataagataatatttgcaagcctcacagcaacctcaaatcaaaaagcacacaataagtgagactgtgtctcaaaaagaaaagaagaaaaaacacacaatggatacacacacacaaaaaagcaagaaattaaatcataccaccagagaaaatcaccttcattaaaaggaaaacaaga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3133082 1184 + 4464012 gtacaagaattttatagaacaccaagcagatttaaccca---aagaagacgacctcaaggcatctgataattaaactctgaaaggtcaaggataaagaaagtatcctaaaagcagcaagagaaaagaaacaaataacatgcagtagagctccaatacatgacatggggcagccacctttccagtggaaaccttacaggccaggggggagtggcatgacatatttaaagtgctgaaggaaaaaaaaacttttagcctagaatagcatatctggcaaaaatgtccttccaacaggaaggagaaataaagaccttcccagacaaacaaaagctgcgagatttcatcaacaccagacctatatcccacaagaaatgctaaagggagtttttcaatctg--aaaaaaaaagatattaatgagcaagaagaaatcatctaaaggtacaaaactcactggtaatagtaagcacacagaaaaacagagtattataatactgtaattgtggtgtgtaaactactcttattttaatt----agactaaatgacgaaccaataaaaaataataagtacttttcaagacatagacagtacagtaagacataaagaggctggacccggtggctcacgcaggtaatgccagcactttgtaaggctgaggtgggtggatcacctgagggcaggagtttgagacaagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaatttagctgggcatggtggtgggcgcctgctacccaggaggctgaggcaggagaatcgcttgaacctgggaagtggaggttacagtgagctgagatcgtgccactgcactctagcctgggcaacagagcaagactttatctcaaaaacaaaaaaagac--agagaaacaacaaaaagttaaaaagcactaagatgaacttaaagtgtagagtttttattagttttctttttgctttatgtttgtttacgcaatcagtgttgtcatccgtttaaaataatgagttataagataatatttgcaagcctcacggcaacctcaaatcaaaaagcacacaataagtgagactgtgtctcaaaaagaaaagaagaaaaaacacacaatggatacacacacacaaaaaagcaagaaattaagtcataccaccagagaaaatcaccttcattaaaaggaagacaaga i gorGor5.CYUI01015375v1 C 0 I 1 s nomLeu3.chr7b 106630447 1178 - 115148730 gtacaagaagtttatagaacaccaagcagatttaacccaaagaagaagacgacctcaaggcatctgataattaaacttcgaaaggtcaaggataaagaaaggatcctaaaagcaacaagagaaatgaaacaaataacatgcaatggagctccaatacatgacatggggcagccacctttccagtggaaaccttacaggccaggggagagtggcatgacatatttaaagtggtgaagg-aaaaaaaacttttaccttagaatagcatatctggcaaaaatgtccttccaacaggaaggagaaataaagaccttcccagacaaacaaaagctgcaagatttcatcaacaccagacc--tatcccacaagaaatgctaaagggagtttttcaatctg--aaaaaaaaggatattaatgatgaagaagaaatcatctaaaggtacaaaactcactggtaatagtaagcacacagaaaaacagagtattataatactgtaattgtggtgtgtaaactactcttgttttaattagaaagactaaatgatgaaccaatcaaaaataataagtacttttcaagacatagacagtacagtaagacataaagaggccggacctggtggctcacgcaggtaatcccagcactctggaaggctgaggtgggtggatcacctgagggcaggagatagagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaatttagctgggcatggtggtgggcacctgctacgcaggaggctgaggcaggagaatcgcttgaacctgggaagtggaggttacagtgagctgagatcgtgccactgcactctagcctgggcaacagagcaagactttatctcaaaaacaaaaaaagaccaagagaaacaacaaaaagttaaaaagcactaagatgaagttaaagtgtagagtttttattagttttctttttgctttatgtttgtttacgtaatcagtgttgtcatcagtttaaaataatgagtt-----ataatatttgcaagcctcacggcaatctcaaatcaaaaagcac---ataagtgagactgtgtctgaaaaagaaaagaagaaaaaacacacaatggatacacacacatgaaaaagcaagaaattaaatcataccaccagagaaaatcgccttcattaaaaggaagac---- i nomLeu3.chr7b C 0 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I e cebCap1.NW_016107750v1 1310163 13933 - 1807191 I e saiBol1.JH378157 8834485 8703 - 16357246 I e calJac3.chrUn_GL286373 1917881 10290 - 2117846 I e colAng1.NW_012115588v1 891145 7073 + 1946073 I e manLeu1.NW_012102031v1 13937085 7542 - 14338769 I e chlSab2.chr19 24672911 7740 + 33263144 I e cerAty1.NW_011999588v1 4042874 7106 - 4483953 I e macNem1.NW_012012688v1 7075224 8092 - 13098629 I e macFas5.chr10 87583867 7418 - 96509753 I e rheMac8.chr10 84238617 7727 + 92844088 I a score=176869.000000 s hg38.chr22_GL383582v2_alt 57272 207 + 162811 aaaaaaaaa---------------------aaaaaaaaaaaaaaaaagagaagaccacaaaacagtgagaaaagaaataacaaaatagcaggagtaagtccctgcttagcaataataacattgaatgtaaatggactaaactctccaatacaaagacacagagtggctgaatggatgaaaaagcaaagctcaatgctcttttgtctagaagaaacacacttcacctgt s panTro5.chr22 28837620 207 + 37823149 aaaaaaaaa---------------------aaaaaaaaaaaaaaaaagagaagaccacaaaacagtgagaaaagaaataacaaaatagcaggagtaagtccctgcttagcaataataacattgaatgtaaatggactaaactctccaatacaaagacacagagtggctgaatggatgaaaaagcaaagctcaatgctcttttgtctagaagaaacacacttcacctgt i panTro5.chr22 I 106 C 0 s panPan2.chr22 41111842 221 + 50109623 -------aannnnnnnnnnnnnnnnnnnncaaaaaaaaaaaaaaaaagagaagaccacaaaacagtgagaaaagaaataacaaaatagcaggagtaagtccctgcttagcaataataacattgaatgtaaatggactaaactctccaatacaaagacacagagtggctgaatggatgaaaaagcaaagctcaatgctcttttgtctagaagaaacacacttcacctgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3134267 207 + 4464012 acaaacaaa---------------------aaaaaaaaaaaaaaaaaaaaaagaccacaaaacagtgagaaaagaaataacaaaatagcaggagtaagtccctacttagcaataataacattgaatgtaaatggactaaactctccaatacaaagacacagagtggctgaatggatgaaaaagcaaagctcaatgctcttttgtctagaagaaacacacttcacctat i gorGor5.CYUI01015375v1 I 1 C 0 s nomLeu3.chr7b 106631625 207 - 115148730 aacaaaaaa---------------------aaaaaaaaaaaaaaagagagaagaccacaaaacagtgagaaaacaactaacaaaatagcaggagtaagtccctacttagcaataataacattgaatgtaaatggactaaactctccaatacaaagacacaaaatggctgaatggatgaaaacgcaaggcccaatgctcttttgcctagaagaaacacacttcacctat i nomLeu3.chr7b C 0 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I e cebCap1.NW_016107750v1 1310163 13933 - 1807191 I e saiBol1.JH378157 8834485 8703 - 16357246 I e calJac3.chrUn_GL286373 1917881 10290 - 2117846 I e colAng1.NW_012115588v1 891145 7073 + 1946073 I e manLeu1.NW_012102031v1 13937085 7542 - 14338769 I e chlSab2.chr19 24672911 7740 + 33263144 I e cerAty1.NW_011999588v1 4042874 7106 - 4483953 I e macNem1.NW_012012688v1 7075224 8092 - 13098629 I e macFas5.chr10 87583867 7418 - 96509753 I e rheMac8.chr10 84238617 7727 + 92844088 I a score=524040.000000 s hg38.chr22_GL383582v2_alt 57479 135 + 162811 aaagatacacatggactgaaaa-taaagggatggaaaaagatactccatgccaatggaaaacaaaaaag-agcaggagtagcaatacttagacagaacagattttaaaacaaaaactgtaagaggaggccgggtgtg s panTro5.chr22 28837827 135 + 37823149 aaagatacacatagactgaaaa-taaagggatggaaaaagatactccatgccaatggaaaacaaaaaag-agcaggagtagcaatacttagacaaaacagattttaaaacaaaaactgtaagaggaggccgggtgtg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41112063 135 + 50109623 aaagatacacatagactgaaaa-taaagggatggaaaaagatactccatgccaatggaaaacaaaaaag-agcaggagtagcaatacttagacaaaacagattttaaaacaaaaactgtaagaggaggccgggtgtg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3134474 135 + 4464012 aaagatacacatagactgaaaa-taaagggatggaaaaagatactccatgccaatggaaaacaaaaaag-ggcaggagtagcaatacttagacaaaacagattttaaaacaaaaactgtaagaagaggccgggtgtg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106631832 137 - 115148730 aaagatatacacagactgaaaattaaagggatggaaaaagacactccatgccaatggaaaacaaaaaaacagtaggagtagcaatacttagacaaaacagattttaaaacaaaaactgtaagaggaggccgggtgtg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84246344 135 + 92844088 aaagatacacgtagactgaaaa-taaagggatagaaaaagatactccacgccaatgaaaaacaaaaaag-agcaggagtagcaatacttagacaaaatagattttaagacaaaaactgtaagaggaggctgggcatg i rheMac8.chr10 I 7727 C 0 s macFas5.chr10 87591285 135 - 96509753 aaagatacacgtagactgaaaa-taaagggatagaaaaagatactccacgccaatgaaaaacaaaaaag-agcaggagtagcaatacttagacaaaatagattttaagacaaaaactgtaagaggaggctgggcatg i macFas5.chr10 I 7418 C 0 s macNem1.NW_012012688v1 7083316 135 - 13098629 aaagatacacatagactgaaaa-taaagggatagaaaaagatactccacgccaatgaaaaacaaaaaag-agcaggagtagcaatacttagacaaaatagattttaagacaaaaactgtaagaggaggctgggcatg i macNem1.NW_012012688v1 I 8092 C 0 s chlSab2.chr19 24680651 135 + 33263144 aaagatacacatagactgaaaa-taaagggatagaaaaagatactccacgccaatgaaaaacaaaaaag-agcaggagtagcaatatttagacaaaatagattttaagacaaaaactgtaagaggaggccgggcatg i chlSab2.chr19 I 7740 C 0 s manLeu1.NW_012102031v1 13944627 135 - 14338769 aaagatacacatagactgaaaa-taaagggatagaaaaagatactccacgccaatgaaaaacaaaaaag-agcaggagtagcaatacttagacaaaatagattttaagacaaagactgtaagaagaggctgggcatg i manLeu1.NW_012102031v1 I 7542 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I e cebCap1.NW_016107750v1 1310163 13933 - 1807191 I e saiBol1.JH378157 8834485 8703 - 16357246 I e calJac3.chrUn_GL286373 1917881 10290 - 2117846 I e colAng1.NW_012115588v1 891145 7073 + 1946073 I e cerAty1.NW_011999588v1 4042874 7106 - 4483953 I a score=4332102.000000 s hg38.chr22_GL383582v2_alt 57614 792 + 162811 gtggctcacgcctgtaatcccagcactttgggaggccaagacgggcggatcacgaggtcaggagattgagactatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtcaacctgggaggcgaagcttgcagtgagccaagatcgcgccactgcactccagcctgggtgacagagcgagactccgtctccaaaacaaaac-aaacaaacaacaacaaccaa--aaaaactgtaagaggagacaaagaaggtcatccagcaacagaatataacaattgtaaatacatatgcacacaacactggagcacgtaaagcaaatgttattggagcccaagag--agacgttaacgcaataacagctaaagacgtcaacaccccacattcagcattggacgggtgtcccagatggaaacccaataagaaaacattagacttaatctgcactacaaaagaaatggacctactagatacttacagaacacttcgtctaaagtctgcagaatacacattcttctcctcagcacatggatcattctcaaggataca--ccatatgttaggtcacaaagcaagtcttaaaacattacaaatgttaaaataatatcaagcatcttctctgaccacaacagaataaaagtggaaatcaacaacaagaggaattctggaaactatacatacacgtgaaaattaaacaatatggtccggaatggccagtggttc s panTro5.chr22 28837962 792 + 37823149 gtggctcacgcctgtaattccagcactttgggaggctgagacgggcggatcacgaggtcgggagattgagactatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtcaacctgagaggcgaagcttgcagtgagccaagatcgtgccactgcactccagcctgggtgacagagcgagactccgtctccaaaacaaaac-aaacaaacaacaaccaccaa--aaaaactgtaagaggagacaaagaaggtcatccagcaacagaatataacaattgtaaatacatatgcacacaacactggagcacgtaaagcaaatgttattagagccaaagag--agaccttaatgcaataacagctaaagacgtcaacaccccacattcagcattggacgggtgtcccagatggaaacccaataagaaaacattagacttaatctgcactacagaacaaatggacctactagatatttatagaacacttcgtctaaagtctgcagaatacacattcttctcctcagcacatggatcattctcaaggataca--ccatatgttaggtcacaaagcaagtcttaaaacattacaaatgttaaaataatatcaagcatcttctctgaccacaacagaataaaagtggaaatcaacaacaacaggaattctggaaactatacatacacgtgaaaattaaacagtatggtccggaatgaccagtggttc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41112198 792 + 50109623 gtggctcacgcctgtaattccagcactttgggaggctgagacgggcggatcacgaggtcgggagattgagactatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtcaacctgggaggcgaagcttgcagtgagccaagatcgtgccactgcactccagcctgggtgacagagcgagactccgtctccaaaacaaaac-aaacaaacaacaaccaccaa--aaaaactgtaagaggagacaaagaaggtcatccagcaacagaatataacaattgtaaatacatatgcacacaacactggagcacgtaaagcaaatgttattagagccaaagag--agaccttaatgcaataacagctaaagacgtcaacaccccacattcagcattggacgggtgtcccagatggaaacccaataagaaaacattagacttaatctgcactacagaacaaatggacctactagatatttatagaacacttcgtctaaagtctgcagaatacacattcttctcctcagcacatggatcattctcaaggataca--ccatatgttaggtcacaaagcaagtcttaaaacattacaaatgttaaaataatatcaagcatcttctctgaccacaacagaataaaagtggaaatcaacaacaagaggaattctggaaactatacatacacgtgaaaattaaacagtatggtccggaatgaccagtggttc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3134609 787 + 4464012 gtggctcacgcctgtaatcccagcactttgggaggctgagacgggcggatcacgaggtcaggagattgagactatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtcaacctgggaggcgaagcttgcagtgagccaagatcgcgccactgcactccagcctgggtgacagagcgagactccgtctccaaaacaaaac-aaacaaacaacaacaaccaa--aaaaactgtaagaggagacaaagaaggtcatccagcaacag-----aacaattgtaaatacatatgcacacaacactggagcacgtaaagcaaatgttattagagccaaagag--agaccttaatgcaataacagctaaagacttcaacaccccacattcagcattggacaggtgtcccagatggaaacccaataagaaaacattagacttaatctgcactatagaacaaatggacctactagatatttatagaacacttcgtctaaagtctgcagaatacacattcttctcctcagcacatggatcattatcaaggataca--ccatatgttaggtcacaaagcaagtcttaaaacattacaaatgttaaaataatatcaagcatcttctctgaccacaacagaataaaagtggaaatcaacaacaagaggaattctggaaactatatatacacgtgaaaattaaacaatatggtccggaatgaccagtggttc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106631969 794 - 115148730 gtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagattgagactatcctggctaacatggcgaaaccccgtctctactaaaaatacaaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatcaacctgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgagtgacagagcaagactccatctccaaaacaaaac-aaacaaacaacaacaacaaaagaaaaactgtaagaggagacaaagaaggtcatccagcaacagaatataacaattgtaaatacatatgcacacaacacgggagcacgtaaagcaaatgtgattagagctaaagag--agaccctaatgcaatagcagctagagacttcaacaccccacattcagcattggacggatgtcccggatggaaacccaacaagaaaacattagacttaatctgcactatagaacaaaaggacctactagatatttatagaacacttcgtctaaagtctgcagaatacacattcttctcctcagcacatggatcattctcaaggataca--ccatatgttaggtcacaaggcaagtcttaaaacattacaaatgttaaaataatatcaagcatcttctccgaccacaacagaataaaagtggaaatcaacaacaagaggaattctgtaaactatacatacacatgaaaattaaacaatatggtccggaataaccagtggttc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84246479 780 + 92844088 gtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtgcatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggcgtgtgcctgtagttccagctactcgggaggctgaggtgggagaatggcttgaacctgggaggcggagcttgcagtgagccgagattgtgccactgcactccagcctgggtgacagagtgagactccctctcacgagcaaaataaaacaaac--------------aaaaactgcaagaggagacaaagaaggtcatccagcaacagaatataacaattgtaaatatatatgtacacaacactggagcacataaagcaaatgttattagagctaaagagatagaccttaatgcaataatagctagggacttcaacaccccacattcagcattggccggacgtcccagatgaaagcccagcaagaaaacattagacttaatctgcactacagaacaaacggacctactagatatttacagaacacttcgtcccaagtcggcagaatgcccgttcttctcctcagcacatggatcattctcaaggataca--ccatatgttaggtcacaaagcaagtcttaaaacattaaaaaagttaaaataataccaagcatcttctctgaccacaacagaataaaagtagaaat---caacaagaggaattctgggaactatacaaacacgtgaaaattaaacaatatgctctggaatgaccagtggttc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87591420 780 - 96509753 gtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtgcatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggcgggcgcctgtagttccagctactcgggaggctgaggcgggagaatggcttgaacctgggaggcggagcttgcagtgagccgagattgtgccactgcactccagcctgggtgacagagtgagactccctctcacaagcaaaataaaacaaac--------------aaaaactgcaagaggagaaaaagaaggtcatccagcaacagaatataacaattgtaaatatatatgtacacaacactggagcacataaagcaaatgttattagagctaaagagatagaccttaatgcaataatagctagggacttcaacaccccacattcagcatcggccggacgtcccagatgaaagcccagcaagaaaacattagacttaatctgcactatagaacaaacagacctactagatatttacagaacacttcgtcc--agtcggcagaatgcccgttcttctcctcagcacatggatcattctcaaggatacaccccatatgttaggtcacaaagcaagtcttaaaacattaaaaaagttaaaataataccaagcatcttctctgaccacaacagaataaaagtagaaat---caacaagaggaattctgggaactatacaaacacgtgaaaattaaacaatatgctctggaatgaccagtggttc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7083451 777 - 13098629 gtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtgcatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatac-aaaaattagctgggcgtggtggcgtgtgcctgtagttccagctactcgggaggctgaggcgggagaatggcttgaacctgggaggcggagcttgcagtgagccgagattgtgccactgcactccagcctgggtgacagagtgagactccctctcacgagcaaaataaaacaaac--------------aaaaactgcaagaggagacaaagaaggtcatccagcaacagaatataacaattgtaaatatatatgtacacaacactggagcacataaagcaaatgttattagagctaaagagatagaccttaatgcaataatagctagggacttcaacaccccacattcagcattggccggacgtcccagatgaaagcccagcaagaaaacattagacttaatctgcactacagaacaaacggacctactagatatttacagaacacttcgtcc--agtcggcagaatgcccgttcttctcctcagcacatggatcattctcaaggataca--ccatatgttaggtcacaaagcaagtcttaaaacattaaaaaagttaaaataataccaagcatcttctctgaccacaacagaataaaagtagaaat---caacaagaggaattctgggaactatacaaacacgtgaaaattaaacaatatgctctggaatgaccagtggttc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4049980 780 - 4483953 gtggctcacgcctgtaatctcagcactttgggagactgaagtgggcagatcacgaggtcaggagatcaagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggcgtgtgcctgtagttccagctactcgggaggctgaggtgggagaatggcttgaacctgggaggcggagcttgcagtgagccgagattgtgccactgcactccagcctgggtgacagagtgagactccctctcacaagcaaaataaaacaaac--------------aaaaactgcaagaggagacaaagaaggtcatccagcaacagaatataacaattgtaaatatatatgcacacaacactggagcacataaagcaaatgttattagagctaaagcgatagaccttaatgcaataatagcgagggacttcaacatcccacattcagcattggccggacgtcccagatgaaagcccagcaagaaaacattagacttaatctgcactacagaacaaatggacccactagatatttacagaacactttgtccaaagtcagcagaatacccgttcttctcctcagcacatggatcattctccaggataca--ccatatgttaggtcacaaagcaagtcttaaaacattaaaaaagttaaaataatatcaagcatcttctctgaccacaacagaataaaagtagaaat---caacaagaggaattctgggaactatacaaacacgtgaaaattaaacaatatgctctggaatgaccagtggttc i cerAty1.NW_011999588v1 I 7106 C 0 s chlSab2.chr19 24680786 780 + 33263144 gtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggatcacgaggtcaggagattgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggtgcgtgcctatagttccagctacttggaaggctgaggcgggagaatggcttgaacctgggaggcggagcttgcagtgagccgagattgtgccactgcactccagcctgggtgacagagtgagactccatctcacaagcaaaataaaacaaac--------------aaaaactgcaagaggagacaaagaaggtcatccagcaacagaatataacaattgtaaatatatatgcacacaacactggagcacataaagcaaatgttattagagctcaagagatagaccttaatgcaataatagctggggacttcaacaccccacattcagcattggccggacgtcccagatgaaagcccagcaagaaaacattagacttaacgtgcactacagaacaaatggacctactagatatttacagaacacttcatccaaagtcagcagaatacctgttcttctcctcagcacatggatcattctcagagataca--ccatatgttaggtcacaaagcaagtcttaaaacattaaaaaagttaaaataatatcaagcatcttctctgaccacaacagaataaaagtagaaat---caacaagaggaattctgggaactatacaaacacgtgaaaattaaacaatatgctctggaatgaccagtggttc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13944762 780 - 14338769 gtggctcacgcctataatcctagcactttgggaggctgaggtgggtggatcacggggtcaggagatcaagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggcgtgtgcctatagttccagctactcgggaggctgaggtgggagaatggcttgaacctgggaggcggagcttgcagtgagccgagattgtgccactgcactccagcctgggtgacagagtgagactccctctcacaagcaaaataaaacaaac--------------aaaaactgcaagaggagacaaagaaggtcatccagcaacagaatataacaattgtaaatatatatgcacacaacactggagcacataaagcaaatgttattagagctaaagagatagaccttaatgcaataatagcgagggacttcaacaccccacattcagcattggccggacgtcccagatgaaagcccagcaagaaaacattagacttaatctgcactacagaacaaatggacctactaaatatttacagaacactttgtccaaagtcagcagaatacccgttcttctcctcagcacatggatcattctcaaggataca--ccatatgttaggtcacaaagcaagtcttaaaacattaaaaaagttaaaataatgtcaagcatcttctctgaccacaacagaataaaagtagaaat---caacaagaggaattctgggaactatacaaacacgtgaaaattaaacaatatgctctggaatgaccagtggttc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 898218 780 + 1946073 gtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccagctctaccaaaaatacaaaaaattagctgggcgtggtggcgtgtgcctgtagttccagctactcaggaggctgaggtgggagaatggcttgaacctgggaggcggagcttgcagtgagccgagattgtgccactgcactccagcctgggtgacagagtgcaactccctctcacaaacaaaacaaaacaaac--------------aaaaactgcaagaggagacaaagaaggtcatccagcaacaggatataacaattgtaaatatatatgcacacaacactggagcacataaagcaaatgttattagagctaaagagacagaccttaatgcaataatagctagggacttcaacaccccatgttcagcattggccggacgtcccagatgaaagcccaacaagaaaacattagacttaatctgcactacagaacaaatggacctactagatatttacaaaacactttgtccaaagtctgcagaatacccattcttctcctcagcacatggatcattctcaagaataca--ccatatgttaggtcacaaagcaagtcttaaaatatgtaaaaagttaaaataatatcaagcatcttctctcaccacaacagaataaaagtagaaat---caacaagaggaattctgggaactatacaaacacgttaaaattaaacaatatgctctggaatgatcagtggttc i colAng1.NW_012115588v1 I 7073 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I e cebCap1.NW_016107750v1 1310163 13933 - 1807191 I e saiBol1.JH378157 8834485 8703 - 16357246 I e calJac3.chrUn_GL286373 1917881 10290 - 2117846 I a score=184534.000000 s hg38.chr22_GL383582v2_alt 58406 31 + 162811 aatgaagaaattaggaaggaaattTggctgg s panTro5.chr22 28838754 31 + 37823149 aatgaagaaattaggaaggaaattTggctgg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41112990 31 + 50109623 aatgaagaaattaggaaggaaattTggctgg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3135396 31 + 4464012 aatgaagaaattaggaaggaaattTggctgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106632763 30 - 115148730 aaagaaaaaa-caggaaagaaattTggctgg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84247259 31 + 92844088 aaggaagaaattaggaaggaaattTggctgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87592200 31 - 96509753 aaggaagaaattaggaaggaaattTggctgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7084228 31 - 13098629 aaggaagaaattaggaaggaaattTggctgg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4050760 31 - 4483953 aaggaagaaattaggaaggaaattTggctgg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24681566 31 + 33263144 aatgaagaaattaggaaggaaattTggctgg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13945542 31 - 14338769 aaggaagaaattaggaaggaaattTggctgg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 898998 31 + 1946073 aatgaagaaattaggaaggaaattTTgctgg i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8843188 27 - 16357246 aaagaagaaa-gaagaagaaAA---GGCTGG i saiBol1.JH378157 I 8703 I 2 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I e cebCap1.NW_016107750v1 1310163 13933 - 1807191 I e calJac3.chrUn_GL286373 1917881 10290 - 2117846 I a score=561195.000000 s hg38.chr22_GL383582v2_alt 58437 79 + 162811 gcacagtagcttacacctgtaatcccagcactctggggggctgaggcagtcagatgacctgagatagggagttcgaaag s panTro5.chr22 28838785 79 + 37823149 gcacagtagcttacacctgtaatcccagcactctggggggctgaggcagtcagatgacctgagataaggagttcgaaag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41113021 79 + 50109623 gcacagtagcttacacctgtaatcccagcactctggggggctgaggcagtcagatgacctgagataaggagttcgaaag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3135427 78 + 4464012 gcacagtagcttacacctgtaatcccagcactct-gggggctgaggcagccagatgacctgagataaggagttcgaaag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106632793 79 - 115148730 gcacagtagcttacacctgtaatcccagcactctggggggctgaggcagccagatgacctgagataaggagtttgaaac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84247290 79 + 92844088 gcacagtagctcacacctgtaatcccagcactctgggaggctgaggcagccagatgacctgagatcaggagtttgagac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87592231 79 - 96509753 gcacagtagctcacacctgtaatcccagcactctgggaggctgaggcagccagatgacctgagatcaggagtttgagac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7084259 79 - 13098629 gcacagtagctcacacctgtaatcccagcactctgggaggctgaggcagccagatgacctgagatcaggagtttgagac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4050791 79 - 4483953 gcacagtagctcacacctgtaatcccagcactctgggaggctgaggcagccagatgacctgagatcaggagtttgagac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24681597 79 + 33263144 gcacagtagctcacacctgtaatcccagcactctgggaggctgaggcagccagatgacctgagatcaggagtttgagac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13945573 79 - 14338769 gcacagtagctcacacctgtaatcccagcactctgggaggctgaggcagccagatgacctgagatcaggagtttgagac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 899029 79 + 1946073 gcacagtagctcacacctgtaatcccagcactgtgggaggctgaggcagccagatgacctgagatcaggagtttgagac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1928171 77 - 2117846 gcatggtggctcacacctgtaatcccatcactttggaaggctgatgcaggtggatcac--gaggtcgagagtttgagac i calJac3.chrUn_GL286373 I 10290 C 0 s saiBol1.JH378157 8843217 77 - 16357246 gcatggtggctcacacctataattccatcactttggaaggctgatgcaggtggatcac--gaggtcaaggatttgagat i saiBol1.JH378157 I 2 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I e cebCap1.NW_016107750v1 1310163 13933 - 1807191 I a score=9208056.000000 s hg38.chr22_GL383582v2_alt 58516 1021 + 162811 cagcctggcc-------------aacatggtg-aaactccgtctctacaaaaaatacaaaa---attagc-aaagcatggtggcatgtgcctgcagtcccagctactagggaggctgagatgggaggattgcttgaacccaggaagtcaaggctgcagtgagccctgatggcatcactgcactccagcctcggtgacagagcaagaccctgtctcaagaaa-----------------------------------acaca-cacacacac-------------acacacacaca-cacac------acac----aGATGCTCAAACTAAT---ATCATTTTGCTGTTAGAGCCAAGAGGGGTGGCCTGTGTAGTAAAAAGTGGGGAAGTCATTCCTTGCACAATGCAAGCCACTGGACCAAGAGTCCAAActgactcttgacaggaggctgggagatatctgctaaggccttggaatgtcctgcctgaaatagtgtctttgtacatagctagggccttggaccgtacaacacagtttatgccaacaatgtgatcgagggtggggccgtcaggcctgtatccatctgacttcaggaggggctggagactgagtaactgaggtcagccatgctgcgggggctcaagcctaggatgaccaactcccaacaaaaaccatggacaccaaggcccaggtgagcttccgtggctggcagggctctctgctgcctcacttactgttgggggagaattaagcactgcctgtaggagtccaccagaaaagagagctgcagccttggcctggtcattctggactctggtccctgtgcctttcatctttgctgactttaatctgtacccttctctgtaataaactgttaacagggagaataacagcttttctagggctgtgagaccttctag-aaatcactgaacctgagggtggtctgggggaGCACAACACAGTCTCCCACCCTAGCCAGGGAAT-GGGTTGATTCTTGGCATATGCCTATTCATATCCACCCCAGCCAAGACTTACGCATGGACTTTGTCACCAAGCCAGGCAGCCAGTGATGGGTCTCTGGGCGTGACGTGGGGGCAGGCT s panTro5.chr22 28838864 1007 + 37823149 cagcctggcc-------------aacatggtg-aaactccgtctctacaaaaaatacaaaa---attaac-aaagcatggtggcatgtgcctgcagtcccagctactagggaggctgagatgggaggattgcttgaacccaggaagtcaaggctgcagtgagccctgatggcatcactgcactccagcctcggtgacagagcaagaccctgtctcaagaaa-----------------------------------acaca-cacacacac-------------acacaca-------------------------GATGCTCAAACTAAT---ATCATTTTGCTGTTAGAGCCAGGAGGGGTGGCCTGTGTAGTAAAAAGTGGGGAAGTCATTCCTTGCACAATGCAAGCCACTGGACCAAGAGTCCAAActgactcttgacaggaggctgggagatatctgctaaggccttggaatgtcctgcctgaaatagtgtctttgtacatagctagggccttggaccgtgcaacacagtttatgccaacaatgtgatcgagggtggggccgtcaggcctgtatctgtctgacttcaggaggggctggagactgagtaactgaggtcagccatgctgcgggggctcaagcctaggatgaccaactcccaacaaaaaccatggacaccaaggcccaggtgagcttccgtggctggcagggctctctgctgcctcacttactgttgggggagaattaagcactgcctgtaggagtccaccaggaaagagagctgcagcctcggcctggtcattctggactctggtccctgtgcctttcatctttgctgactttaatctgtacccttctctgtaataaaccgttaacagggagaataacagcttttctagggctgtgagaccttctag-aaatcactgaacctgagggtggtctgggggaGCACAACACAGTCTCCCACCCTAGCCAGGGAAT-GGGTTGATTCTTGGCATATGCCTATTCATATCCACCCCAGCCAAGACTTACGCATGGACTTTGTCACCAAGCCAGGCAGCCAGTGATGGGTCTCTGGGCGTGACGTGGGGGCAGGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41113100 1025 + 50109623 cagcctggcc-------------aacatggtg-aaactccgtctctacaaaaaatacaaaa---attaac-aaagcatggtggcatgtgcctgcagtcccagctactagggaggctgagatgggaggattgcttgaacccaggaagtcaaggctgcagtgagccctgatggcatcactgcactccagcctcggtgacagagcaagaccctgtctcaagaaa-----------------------------------acaca-cacacacac-------------acacacacaca-cacac------acacacaGAGATGCTCAAACTAAT---ATCATTTTGCTGTTAGAGCCAGGAGGGGTGGCCTGTGTAGTAAAAAGTGGGGAAGTCATTCCTTGCACAATGCAAGCCACTGGACCAAGAGTCCAAActgactcttgacaggaggctgggagatatctgctaaggccttggaatgtcctgcctgaaatagtgtctttgtacatagctagggccttggaccgtgcaacacagtttatgccaacaatgtgatcgagggtggggccgtcaggcctgtatccgtctgacttcaggaggggctggagactgagtaactgaggtcagccatgctgcgggggctcaagcctaggatgaccaactcccaacaaaaaccatggacaccaaggcccaggtgagcttccgtggctggcagggctctctgctgcctcacttactgttgggggagaattaagcactgcctgtaggagtccaccaggaaagagagctgcagcctcggcctggtcattctggactctggtccctgtgcctttcatctttgctgactttaatctgtacccttctctgtaataaaccgttaacagggagaataacagcttttctagggctgtgagaccttctag-aaatcactgaacctgagggtggtctgggggaGCACAACACAGTCTCCCACCCTAGCCAGGGAAT-GGGTTGATTCTTGGCATATGCCTATTCATATCCACCCCAGCCAAGACTTACGCATGGACTTTGTCACCAAGCCAGGCAGCCAGTGATGGGTCTCTGGGCGTGACGTGGGGGCAGGCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3135505 1020 + 4464012 cagcctggcc-------------aacatggtg-aaactccgtctctacaaaaaatacaaaa---attagc-aaagcatggtggcatgtgcctgcagtcccagctactagggaggctgagatgggaggattgcttgaa-ccaggaagtcaaggctgcagtgagccctgatggcatcactgcactccagcctcggtgacagagcaagaccctgtctcaagaaa-----------------------------------aaCcaccacaccacc-------------acacacacacaccacac------acac----aGATGCTCAAACTAAT---ATCATTTTGCTGTTAGAGCCAAGAGGGGTGGCCTGTGTAGTAAAAAGTGGGGAAGTCATTCCTTGCACAATGCAAGCCACTGGACCAAGAGTCCAAActgacttttgacaggaggctgggagatatctgctaaggccttggaatgtcctgcctgaa--agtgtctttgtacatagctagggccttggaccgtacaacacagtttatgccaacaatgtgatcgagggtggggccatcaggcctgtatccatctgacttcaggaggggctggagactaagtaactgaggtcagccatgctgcgggggctcaagcctaggatgaccaactcccaacaaaaaccatggacaccaaggcccaggtgagcttccgtggctggcagggctctctgctgcctcacttactgttgggggagaattaagcactgcctgtaggagtccaccaggaaagagagctgcagcctctgcctggtcattctggactctgggccctgtgcctttcatctttgctgactttaatctgtacccttctctgtaataaaccgttaacagggagaataacagcttttctagggctgtgagaccttctag-aaatcactgaacctgagggtggtctgggggaGCACAACACAGTCTCCCACCCTAGCCAGGGAAT-GGGTAGATTCTTGGCATATGCCTATTCATATCCACCCCAGCCGAGACTTACGCATGGACTTTGTCACCAAGCCAGGCAGCCAGTGATGGGTCTCTGGGCGTGACGTGGGGGCAGGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106632872 1054 - 115148730 cagcctggcc-------------aacatggtg-aaaccccgtctctacaaaaaatacaaaa---attagcaaaagcatggtggcatgtgcctgcagtcccagctactagggaggctgaaatgggaggattgcttgaacccaggaagtcaaggctgcagtgagccctgatggcatcactgcactccagcctcggtgacagagcaagaccctgtctcaagaaaacaaaaCGCACGCATacacacatacacacatacacacaca-cacacacac-------------acacacacaca-cacac------acacacacaGATGCTCAAACTAAT---ATTATTTTGCTGTTAGAGCCAAGAGGGGTGGCCTGTATAGTAAAAAGTGGGGAAGTCATTCCCTGCCCGATGCAAGCCATTGGACCAAGAGTCCAAAC-------tgacaggcggctgggagatatctgctaaggctttggaatgtcctgcctgaaacagtgtctttgtacatagctagggccttggaccgtacaacacagtttatgccaacaatgtgatcgaggatggggccctcaggcctgtatccatctgacttcaggaggggttggagactgagtaactgaggtcagccatgctgcaggggctcacgcctaggatgaccaactcccaacaagaaccatggacaccaaggctcaggtgaccttccgtggctggcagggctctctgctgtgtcacttactgttgggggagaattaagcactgcctgtaggagtccaccaggaaagagagctgcagccttagcctggtcattctggactctgacccctgtgcctttcatctttgctgactttaatctgtacccttctctgtaataaaccgttaacagggagaataacagcttttctagggctgtgagaccttctag-aaatcactgaacctgagggtggtctgggggaGCACAACACAGTCTCCCACCCTAGCCAGGGAAT-GGGCTGATTCTTGGCATATGCCTATTCATATCCACCCCAGCCAAGACTTACGCATGGACTTTGTCACCAAGCCAGGCAGCCAGTGATGGGTCTCTGGGCGTGACGCGGGGGCAGGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84247369 1014 + 92844088 cagtctggcc-------------aacatggtgaaaaccccgtttctacaaaaaata-aaaa---attagc-agagcatggtggcatgtgcctgcagttccagctactagggaggctgagatgggaggattgcttgaacccgggaagtcaaggctgcggtgagccctgatggcatcactgcactccagcctcggtgacagagcaagactctgtctcaagaaa-----------------------------------acaaa-caaaaaaaC----------------cacacaca-cacac------acacacacaGATGCTCAAACTAGT---ATCATTTTGCTGTTAGAGCCAAGAGGGGTGGCCTGTGTAGTAAAAACGGCGGAAGTCATTCCTTGCACAATGCAAACCATTGGACCAAGAGTCCAAActgactcttgacaggctgttgggagatatctgctaaggccttggaatgtcctgcctgaaatagtgcctttgtacatagctggggccttggatcatacaacacagtttatgccaacaatgtgactgggggtggggccctt-ggcctgtatccatctgacttcaggaggggctagagactgagtaactgaggtcagccatgttg-gggggctcaagcctagg-tttttgtgtcccaacaaaaaccctggacaccaaggctcaggtgagcttccatggctggcagtgctctctac---atcacttgctgttgggggagaattaagcactgcctgtaggagtccaccaggaaagagagctacagcttcagcctggttattctggactgtggcccc-gtgcctttcatctttgctgactttaatctgtacgcttctctgtaataaactg-taacaggaaggataacagcttttctaggtctgtgagaccttctagcaaatcaccgaacctgagggtggtctgggggaccacaacacaGTCTCCCACCCTAGCCAGGGAAT-GGGCTGATTCCTGGCATATGCCTATTCATATCCA-CCCAGCCAAGACATATGCATGGACTTTGTTGCCAAGCCAGGCAGCCAGTGATGGGTCTCTGGGCGTGACGTGGGGGTAGGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87592310 1014 - 96509753 cagtctggcc-------------aacatggtgaaaaccccgtttctacaaaaaata-aaaa---attagc-agagcatggtggcatgtgcctgcagttccagctactagggaggctgagatgggaggattgcttgaacccgggaagtcaaggctgcggtgagccctgatggcatcactgcactccagcctcggtgacagagcaagactctgtctcaagaaa-----------------------------------acaaa-caaaaaaaC----------------cacacaca-cacac------acacacacaGATGCTCAAACTAGT---ATCATTTTGCTGTTAGAGCCAAGAGGGGTGGCCTGTGTAGTAAAAACGGCGGAAGCCATTCCTTGCACAATGCAAACCATTGGACCAAGAGTCCAAActgactcttgacaggctgttgggagatatctgctaaggccttggaatgtcctgcctgaaatagtgcctttgtacatagctggggccttggatcatacaacacagtttatgccaacaatgtgaccgggggtggggccctt-ggcctgtatccatctgacttcaggaggggctagagactgagtaactgaggtcagccatgttg-gggggctcaagcctagg-tttttgtgtcccaacaaaaaccctggacaccaaggctcaggtgagcttccatggctggcagtgctctctac---gtcacttgctgttgggggagaattaagcattgcctgtaggagtccaccaggaaagagagctgcagcctcagcctggttattctggactgtggcccc-gtgcctttcatctttgctgactttaatctgtacgcttctctgtaataaactg-taacaggaaggataacagcttttctaggtctgtgagaccttctagcaaatcaccgaacctgagggtggtctgggggaccacaacacaGTCTCCCACCCTAGCCAGGGAAT-GGGCTGATTCCTGGCATATGCCTATTCATATCCA-CCCAGCCAAGACATATGCATGGACTTTGTTGCCAAGCCAGGCAGCCAGTGATGGGTCTCTGGGCGTGACGTGGGGGTAGGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7084338 1026 - 13098629 cagtctggcc-------------aacatggtgaaaaccccgtttctacaaaaaata-aaaa---attagc-agagcatggtggcatgtgcctgcagttccagctactagggaggctgagatgggaggattgcttgaacccgggaagtcaaggctgcggtgagccctgatggcatcactgcactccagcctcggtgacagagcaagactctgtctcaagaaa-----------------------------------acaaa-caaaaaaaC----cacacacacacacacacaca-cacac------acacacacaGATGCTCAAACTAGT---ATCATTTTGCTGTTAGAGCCAAGAGGGGTGGCCTGTGTAGTAAAAACGGCGGAAGTCATTCCTTGCACAATGCAAACCATTGGACCAAGAGTCCAAActgactcttgacaggctgttgggagatatctgctaaggccttggaatgtcctgcctgaagtagtgcctttgtacatagctggggccttggatcatacaacacagtttatgccaacaatgtgaccgggggtggggccctt-ggcctgtatccatctgacttcaggaggggctagagactgagtaactgaggtcagccatgttg-gggggctcaagcctagg-tttttgtgtcccaacaaaaaccctggacaccaaggctcaggtgagcttccatggctggtagtgctctctat---gtcacttgctgttgggggagaattaagcactgcctgtaggagtccaccaggaaagagagctgcagcctcagcctggttattctggactgtggcccc-gtgcctttcatctttgctgactttaatctgtacgcttctctgtaataaactg-taacaggaaggataacagcttttctaggtctgtgagaccttctagcaaatcaccgaacctgagggtggtctgggggaccacaacacaGTCTCCCACCCTAACCAGGGAAT-GGGCTGACTCCTGGCATATGCCTATTCATATCCG-CCCAGCCAAGACATATGCATGCACTTTGTTGCCAAGCCAGGCAGCCAGTGATGGGTCTCTGGGCGTGACGTGGGGGTAGGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4050870 1029 - 4483953 cagtctggcc-------------aacatggtgaaaaccccgtttctacaaaaaata-aaaa---attagc-ggagcatggtggcatgtgcctgcagttccagctactagggaggctgagatgggaggattgcttgaacccaggaagtcaaggctgcagtgagccctgatgccatcactgcactccagcctcggtgacagagcaagaccctgtctcaagaaa-----------------------------------acaaa-caaaaaaacaaaacacacacacacacacacaca-tacac------acacacacaGATGCTCAAACTAGT---ATCATTTTGCTGTTAGAGCCAAGAGGGGTGGCCTGTGTAGTAAAAACGGGGGAAGTCATTCCTTGCACAATGCAAACCATTGGACCAAGAGTCCAAActgactcttgacaggctgttgggagatatctgctaaggccttggaatgtcctgcctgaaatagtgcctttgtacatagctggggccttggatcatacaacatagtttatgccaacaatgtgaccgggggtggggccctt-ggcctgtatccatctgacttcaggaggggctagagactgagtaactgaggtcagccatgttg-gggggctcaagcctagg-tttttgtgtcccaacaaaaaccctggacaccaaggctcaggtgagcttccatggctggcagtgctctctac---gtcacttgctgttgggggagaattaagcactgcctgtaggagttcaccaggaaagacagctgcagcctcagcctggttattctggactgtggcccctgtgcctttcatctttgctgactttaatctgtacccttctctgtaataaactg-taacaggaaggataacagcttttctaggtctgtgagaccttctagcaaatcaccgaacctgagggtggtctgggggaccacaacacaGTCTCCCACCCTAGCCAGGGAAT-GGGCTGATTCCTGGCATATGCCTATTCATATCCA-CCCAGCCAAGACATATGCATGGAC--TGTTGCCAAGCCAGGCAGCCAGTGATGGGTCTCTGGGCGTGACGTGGGGGTAGGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24681676 1036 + 33263144 cagtctggccccgtttctacaaaaacatggtgaaaaccccgtttctacaaaaaatacaaaa---attagc-agagcatggtggcatgtgcctgcagttctagctactagggaggctgagatgggaggattgcttgaaccca-gaagtgaaggctgcggtgagccctgatggcatcactgcactccagcctcagtgacagagcaagaccctgtctcaataaa-----------------------------------acaaa-caaaaaaac------aaa--acacacacacaca-cacac------acacacaGAGATGCTCAAACTAGT---ATCATTTTGCTGTTAGAGCCAAGAGGGGTGGCCTGTGTAGTAAAAACGGGGGAAGTCATTCCTTGCACAATGCAAACCATTGGACCAAGAGTCCAAActgactcttgacaggctgttgggagatatctgctaaggccttggaatgtcctgcctgaaatagtgcctttgtacatagctggggccttggatcatacaacacagtttatgccaacaatgtgaccgggggtggggccctt-ggcctgtatccatctgacttcaggaggggctagagactgagtaactgaggtcagccatgttg-gggggctcaagcctggg-tttttgtgtcccaacaaaaaccctggacaccaaggctcaggtgagcttccatggctggcagtgctctccac---gtcacttgctgttgggggagaattaagcactgcttgtaggagtccaccaggaaagagagctgcagcctcagcctggttattctggactgtggcccctgtgcctttcatctttgctgactttaatctgtacccttctctgtaataaactg-taacaggaaggataacagcttttctaggtgtgtgagaccttctagcaaatcaccgaacctgagggtggtctgggggaccacaacacaGTCTCCCACCCTAGCCAGGGAAT-GGGCTGATTCCTGGCATATGCCTATTCATATCCA-CCCAGCCAAGACATATGCTTGGACTTTGTTGCCAAGCCAGGCAGCCAGTGATGGGTCTCTGGGCGTGACGTGGGGGTAGGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13945652 1023 - 14338769 cagtctggcc-------------aacatggtgaaaaccccgtttctacaaaaaata-aaaa---attagc-agagcatggtggcatgtgcctgcagttccagctactagggaggctgagatgggaggattgcttgaacccaggaagtcaaggctgcagtgagccctgatggcatcactgcactccagcctcggtgacagagcaagaccctgtctcaagaaa-----------------------------------acaaa-caaaaaaac------aaaacacacacacacaca-cacac------acacacacaGATGCTCAAACTAGT---ATCATTTTGCTGTTAGAGCCAAGAGGGGTGGCCTGTGTAGTAAAAACGGGGGAAGTCATTCCTTGCACAATGCAAACC--TGGACCAAGAGTCCAAActgactcttgacaggctgttgggagatatctgctaaggccttggaatgtcctgcctgaaatagtgcctttgtacatagctggggccttggatcatacaacatagtttatgccaacaatgtgaccgggggtggggccctt-ggcctgtatccatctgacttcaggaggggctagagactgagtaactgaggtcagccatgttg-gggggctcaagcctagg-tttttgtgtcccaacaaaaaccctggacaccaaggctcaggtgagcttccatggctggcagtgctctctat---gtcacttgctgttgggggagaattaagcactgcctgtaggagtccaccaggaaagacagctgcagcctcagcctggttattctggactgtggcccctgtgcctttcatctttgctaactttaatctgtacccttctctgtaataaactg-taacaggaaggataacagcttttctaggtctgtgagaccttctagcaaatcaccgaacctgagggtggtctgggggaccacaacacaGTCTCCCACCCTAGCCAGGGAAT-GGGCTGATTCCTGGCATATGCCTATTCATATCCA-CCCAGCCAAGACATATGCATGGACTTTGTTGCCAAGCCAGGCAGCCAGTGATGGGTCTCTGGGCGTGACGTGGGGGTAGGCT i manLeu1.NW_012102031v1 C 0 I 13 s colAng1.NW_012115588v1 899108 1022 + 1946073 cagtctggcc-------------aacatggtgaaaaccccgtctctacaaaaaatacaaaa---attagc-agagcatggtggcatgtgcctgcagtcccagctactagggaggctgagacgggaggattgcttgaacccaggaagtcaaggctgcagtgagccctgatggcatcactgcactccagcctcggtgacagagcaagaccctgtctcaagaaa-----------------------------------acaaa-aaaaaaaaa-----------caaaacacacaca-cacac------acacacacaGATGCTCAAACTAGT---ATCATTTTGCTGTTAGAGCCAAGAGGGGTGGCCTGTGTAGTAAAAACGGGGGAAGTCATTCCTTGCACAATGCAAACCATTGGACCAAGAGTCCCAActgactcttgataggctgttgggagatatctgctaaggccttggaatgtcctgcctgaaatagtgcctttgtacatagctggggccttggatcatacaacacagtttatgccaacaatgtgaccgggggtggggccctt-ggcctgtatccatctgacttcaggaggggctagagactgagtaactgaggtcagccatgttg-gggtgctcaagcctaggatgaccaactcccaacaaaaaccctggacaccaaggctcaggtgagcttccatggctggcagtgctctctac---gtcacttgctgttgggggagaattaagcactgcctgtaagagtccaccaggaaagagagctgcagcctcagcctggttattctggactgtaggccctgtgcctttcatctttgctgattttaatctgtacccttctctgtaataaactg-taacagggaggataacagcttttctaggtctgtgagaccttctagcaaatcactgaacctgagggtggtctgggggaccacaacacaGTCTCCCACCCTAGCCAGGGAAT-GGGCTGATTCCTGGCATATGCCTATTCATATCCA-CCCAGCCAAGACATATGCATGGACTTTGTCGCCAAGCCAGGCAGCCAGTGATGGGTCTCTGGGCGTGATGTGGGGGTAGGCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1928248 989 - 2117846 cagcctggtc-------------agcatggtg-aaactccgtctctactaaaaacacaaaaattattagc-caggtatggtggcatgcgcctgtagtcccagttacttgggaggctgaaccagaaaaattgcttgaacccaggaggcgaaggttgcagtgagccgggattgcaccattgcactccagcctggacaacaaagggagaccctgtctc---aaa-----------------------------------acaaa-aagaaa-aC-------------ACCCACACACA-CGCTC-----------------------AACTAATGTGATCATTATGGTGTCAGAGCTAAGA-GGGTGGCCTGTGTCGTAAAAAAtggggaagtcatttcttgcacaatccaaacca----------aatc---actgactcttgacaggctgctgggagata--tgctaaggccttggaatgtcacgtctgaaatagtgtctttgtacatagctggggccattgaccatacaacacagttcatgccaacagtgtgactgagggttggaccctcaggcctgtatctacctgattt---gaggggctcgagactgagtaactgaggtcagccatggcg-gggggctcgagcctaggatg-ccaactcccagcaagaactctggacaccaaggctcacgtgagcttccgtggctggcagcgctctctgcagtgtcacttactgttgggggagaattaagcgctgcctgtaggattccaccagaaacgagagatgcagcctctgcctggtcattctggattctgccccctgtgcctttcatcttcactgactttaatctgtacccttctctgtaatacacca-ttaaagggaggataacaactcttttaggtctgtgagaccttccagcaaatcattggacctgagggtggtctggggttcccgaacacaGTCTCCCACCCTAGCCAGGGACT-GGGCTGATTCCTGGCACATGCCTATCCATATCTAACCCAGCCAAGACTTATGCATGGACCTTGTCACCAAGCCAGGCAGCCAGTGATGGGTTTCTGGGGGTGACGTGGAGGTAAGCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8843294 995 - 16357246 cagcctggcc-------------agcatggta-aaactccatctctactaaaaatacaaaa---cttagc-caggtgtggtggcatgtgcctgtagtcccagttacttggaaggctgagccagaagaattgcttgaacccaggaggcaaaggttgcagtgagctgcaattgcaccattgcactccagcctgggcaacaaagggagaccctgtctc----aa-----------------------------------acaaa-aagaaa-ac-------------acacacacaca-cacac------acacacacacacGCTCAAACTAATGTAATCATTATGGTGTCAGAGCCAAGA-GGGTGACCTGTGTAGT-AAAAAtggggaagtcatttcttgcacaatccaaacca----------aatc---actgactcttgacaggctgctgggagaca--tgctaaggccttggaatgtcctgtctgaaata--gtctttgtacatagctggcgcctttgaccatacaacacagttcatgccaacagcgtgactgagggttggaccctcaggcttgtatccacctgactt---gaggggctcgagactgagtaaccgaggtcagccat-gtg-gggggctcaagcttaggatgaccaactcccaacaagaactctggacaccaaggctcaagtgagcttctgtggctggcagcactctctgcagtgtcacttactgttgagggagaattaagcgctgcctgtaggattccaccaggaatgagagctgcagcctctgcctggtcattctggattctgccccctgtgcctttcatcttcactgactttaatctgta-ccttctctgtaataaacca-taaaagggaggataacaacttttttaggtctgtgagaccg---agcaaatcactggacctgagagtggtctggggttcccgaacacaGTCTCCCACCCTAGCCAGGGACT-GGGCTGATTCCTGGCACATGCCTATTCATATCTAACCCAGCCAAGACATATGCGTAGACCTTGTCACCAAGTCAGGCAGCCAGTGATGGGTTTCTGGAGGTGATGTGGAGGTAAGCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1324096 998 - 1807191 cagcctggcc-------------agcatggtg-aaactccgtctctactaaaaatacaaaa---attagc-caggtgtggtggcatgcgcctgtagtcccacttacttgggaggctgagccagaagaatcacttgaacccgggaggcgaaggttgcagtgagccacgattgcaccattgcactccagcctgggcaacaaagggagaccctgtctc---aaa-----------------------------------acaaa-aagaaa-a--------------acatacacaca-cgtac------------acacacgctcacacTAATGTGATCATTATGGTGTCAGAGCCAAGA-GGGTGGCCTGTGTAGTAAAAAATGGGGAAGTCATTTcttacacaatccaaacca----------aatc---actgacccttgacaggctgctgggagata--tgctaaggccttggaatgtcccgtctgaaacagtgtctttgtacatagctggggcctttgaccatacaacacagttcatgccaacagtgtgactgagggttggaccctcaggcctgtatccacctgactg---gaggggcttgagactgagtaactgaggtcagccatgttg-gggggctcaagcctaggatgaccaactcccaacaagaactctggacaccaaggctcacgtgagcttccatggctggcagcgctctctgcagtgtcacttattgttgggggagaattaagcgctgcctgtaggattccaccaggaatgagagctgcagcctctgcctggtcattctggattctgccccctgtgcctttcatcttcactgacttcaatctgtacccttctctgtaataaacca-taaaagggaggataacaacttttttaggtttgtgagaccttctagcaaatcactggacctgagggtggtctggggttcccgaacacaGTCTCCCACCCTAGCCAGGGACTGGGGCTGATTCCTGGCACATGCCTATTCATATCTAACCCAGCCAAGACTTATGCATGGACCTTGTCACCAAGTCAGGCAGCCAGTGATGGGTTTCTGGGGGTGACATGGAGGTAAGCT i cebCap1.NW_016107750v1 I 13933 C 0 s aotNan1.NW_018512383v1 3383 1007 + 5963231 cagcctggcc-------------agcatggtg-aaactctgtccctactaaaaatacaaaa---attagc-caggtgtggtggcatgcgcctgtagtcccagttacttgggaggctgagccagaagaatcacttgaacccaggaggtgaaggttgcagtgagccgcaactgcaccatcacactccagcctgggcaacaaagggagaccctgtctc---aaa-----------------------------------acaaa-aagaaacac-------------acacacacaca-cgcacacacgcacacacacacacGCTCAAACTAATGTGATCATTATGGTGTCAGAGCCAAGA--GGTGGCCTGTGTCGTAAAAAATGGGGAAGTCATTTcttgcacaatccaaacca----------aacc---actgactcttgacaggctgctgggaaata--tgctaaggccttggaatgtcccatctgaaatagtgtctttgtacgtagctggggcctttgaccatacaacacagttcatgccaacagtgtgactgagggttggaccctcaggcctgtatccacctgactt---gaggggctcgagactgagtaactgaggtcagccgtgtcg-ggaggctcaagcctaggatgaccaactcccaacaagaactctggacaccaaggctcacgtgagcttccatggctggcagcgctctctgcagtgtcac-tgcagttcggggagaattaagcgctgcctgtaggattccatcaggaacgagagctgcagcctctgcctgatcattctggattctgcccc--gtgcctttcatcttcgctgactttaatctgcacccttctctgtaataaacca-taaaagggaggataacaacttttttaggtttgtgagaccttccagcaaatcactggacttgagggtggtctggggttcccgaacacaGTCTCCCACCCTGGCCAGGGACT-GGGCTGATTCCTGGCACATGCCTATTCATATCTAACCCAGCTAAGACTTATGCATGGACCTTGTCACCAAGCCAGGCAGCCAGTGATGGGTTTCTAGGGGTGATGTGGAGGTAAGCT i aotNan1.NW_018512383v1 N 0 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I a score=20745.000000 s hg38.chr22_GL383582v2_alt 59537 4 + 162811 GTTT s panTro5.chr22 28839871 4 + 37823149 GTTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41114125 4 + 50109623 GTTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3136525 4 + 4464012 GTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106633926 4 - 115148730 GTCG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84248383 4 + 92844088 GTCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87593324 4 - 96509753 GTCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7085364 4 - 13098629 GTCG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4051899 4 - 4483953 GTTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24682712 4 + 33263144 GTCG i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 900130 4 + 1946073 GTCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1929237 4 - 2117846 GTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8844289 4 - 16357246 GTCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1325094 4 - 1807191 GTCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 4390 4 + 5963231 GTCA i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I e manLeu1.NW_012102031v1 13946675 13 - 14338769 I a score=3352635.000000 s hg38.chr22_GL383582v2_alt 59541 376 + 162811 CCTGCTGAGAATCACTATGCCTGTATCTCAAGTAAAGTCAGGCGTCCAGG-TAAGAGTGAATGAGGTGAggctggtctcggtggctcacgcctgtaatcccagcactttgggaggctgaggctggt-ggtcacgtgaagtcaggagtttgaaaccagactggccaacatggcgaaacccatcactactaaaaagacaaaaatgagccgggggtggtacccggtgcctgtaatcccagctactcaggaagctgaggcacgagaatcgcttgaactctggaggcggaggttgcagtgagctgagattgcaccactgcactccagcctgggtgacagag-taggctccatctca-aaaaaaaaaaaaaaaaaa----TGAATGA----ATG s panTro5.chr22 28839875 377 + 37823149 CCTGCTGAGAATCACTATGCCTGTATCTCAAGTAAAGTCAGGTGTCCAGG-TAAGAGTGAATGAGGTGAggctggtctcggtggctcacgcctgtaatcccagcactttgggaggctgaggctggt-ggtcacgtgaggtcaggagtttgaaagcagactggccaacatggcgaaacccatcactactaaaaagacaaaaatgagccgggggtggtaccgggtgcctgtaatcccagctactcaggaagctgaggcacgagaatcacttgaactctggaggtggaggttgcagtgagctgagattacaccactgcactccagcctgggtgatagag-taggctccatctca-aaaaaaaaaaaaaaaaaa---aTGAATGA----ATG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41114129 380 + 50109623 CCTGCTGAGAATCACTATGCCTGTATCTCAAGTAAAGTCAGGTGTCCAGG-TAAGAGTGAATGAGGTGAggctggtctcggtggctcacgcctgtaatcccagcactttgggaggctgaggctggt-ggtcacgtgaggtcaggagtttgaaagcagactggccaacatggcgaaacccatcactactaaaaagacaaaaatgagccgggggtggtaccgggtgcctgtaatcccagctactcaggaagctgaggcacgagaatcgcttgaactctggaggtggaggttgcagtgagctgagattacaccactgcactccagcctggatgatagag-taggctccatctca-caaaaaaaaaaaaaaaaataaaTGAATGA----ATG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3136529 365 + 4464012 CCTGCTGAGAATCACTATGCCTGTATCTCAGGTAAAGTCAGGTGTCCAGG-TAAGAGTGAATGAGGTGAggctggtctcggtggctcacgcctgtaatcccagcactttgggaggctgaggctggt-ggtcacgtgaggtcaggagtttgaaaccagactggccaaca-ggcgaaacccatcactactaaaaagacaaaaatgagccaggggtggtaccgggtgcccgtaatcccagctactcaggaagctgaggcacgagaatcgcttgaactcgggaggcggaggttgcagtgagctgagactgcaccactgcactccagcctgggtgatagag-taggctccatctca-aaaaaaaaa--------------gaaTGA----ATG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106633930 376 - 115148730 CCTGCTGAGAATCACTATGCCTGTATCTCAAGTAACGTCAGGTGTCCAGG-TAAGAATGAATGAGTTAAggctggtctcggtggctcacgcctgtaatcccagcactttgggaggctgaggctggt-ggtcacgtgaggtcaagagtttgaaaccagactggcccacatggcgaaacccatcactactaaaaagacaaaagtgagctgggggtggtaccgggtgcctgtaatcccagctactcaggaagctgaggcacgagaattgcttgaactcgggaggcggaggttgcagtaagctgagattgcaccactgcactccagcctgggtgacagag-taggctccatgtca-aaaaaaaaaaaaaaaaaa----agaaTGA----ATG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84248387 382 + 92844088 CCTGCTGAGAATCACTATGCCTGTATCTCAAGTAAAGTCAGGTGTCCAGG-TAAGAATGAATGAGGTGAggccagtctcggtggctcacacttgtaatcccagcactttgggaggctgagggtggtgggtcgcctcaagtcaggagtttgaaaccagactggccaacatggcgaaacccatcactactaaaaagacaaaaattagccaggggtggtaacgggtgcctgtaatcccagctactcgggaagctgatgcacgagaattgcttgaactcgggaggtggaggttgcaatgagctgagactgcaccactgcactccagcctgggtgacagag-cagactccatctccaaaaaaaaaaaaaaaaaaa----agaaTGaggtgaca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87593328 381 - 96509753 CCTGCTGAGAATCACTATGCCTGTATCTCAAGTAAAGTCAGGTGTCCAGG-TAAGAATGAATGAGGTGAggccagtctcggtggctcacatttgtaatcccagcactttgggaggctgagggtggtgggtcgcctcaagtcaggagtttgaaaccagactggccaacatggcgaaacccatcactactaaaaagacaaaaattagccaggggtggtaacgggtgcctgtaatcccagctactcgggaagctgatgcacgagaattgcttgaactcgggaggtggagtttgcaatgagctgagactgcaccactgcactccagcctgggtgacagag-cagactccatctcc-aaaaaaaaaaaaaaaaaa----agaaTGaggtgaca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7085368 381 - 13098629 CCTGCTGAGAATCACTATGCCTGTATCTCAAGTCAAGTCAGGTGTCCAGG-TAAGAATGAATGAGGTGAggccagtctcggtggctcacacttgtaatcccagcactttgggaggctgagggtggtgggtcgcctgaagtcaggagtttgaaaccagactggccaacatggcgaaacccatcactactaaaaagacaaaaattagccaggggtggtaacgggtgcctgtaatcccagctactcgggaagctgatgcacgagaattgcttgaactcgggaggtggaggttgcaatgagctgagactgcaccactgcactccagcctgggtgacagag-cagactccatctcc-aaaaaaaaaaaaaaaaaa----agaaTGaggtgaca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4051903 382 - 4483953 CCTGCTGAGAACCACTATGCCTGTATCTCAAGTCAAGTCAGGTGTCCAGG-TAAGAATGAATGAGGTGAggccagtctcggtggctcacacctgtaatcccagcactttgggaggctgagggtggtgggtcgcctgaagtcaggagtttgaaaccagactggccaacatggcgaaacccatcactactaaaaagacaaaaattagccgggggtggtaacgggtgcctgtaatcccagctactcgggaagctgatgcacgagaattgcttgaactcgggaggtggaggttgcaatgagctgagactgcaccactgcactccagcctgggtgacagag-cagactccatctccaaaaaaaaaaaaagaaaaa----agaaTGaggtgaca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24682716 376 + 33263144 CCTGCTGAGAATCACTATGCCTGTATCTCAAGTAAAGTCAGGTGTCCAGA-TAAGAATGAATGAGGTGAggccagtctcggtggctcacacctgtaatcccagcactttgggaggctgagggtggtgggtcgcctgaagtcaggagtttgaaaccagactggccaacatggcgaaacccatcactactaaaaagacaaaaattagccaggggtggtaacgggtgcctgtaatcccagctactcgggaagctgatgcacgagaattgcttgaactcgggaggtggaggttgcaatgagctgagattgcaccactgcactccagcctgggtgacagag-tagactccatctca-aaaaaaaaaaaaaaaaaa----aaaagaaTG----- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13946688 381 - 14338769 CCTGCTAAGAATCACTATGCCTGTATCTCAAGTCAAGTCAGGTGTCCAGG-TAAGAATGAATGAGGTGAggccagtctcggtggctcacacctgtaatcccagcactttgggaggctgagggtggtgggtcgcctgaagtcaggagtttgaaaccagactggccaacatggcaaaacccatcactactaaaaagacaaaaattagccgggggtggtaacgggtgcctgtaatcccagctactcgggaagttgatgcacgagaattgcttgaactcgggaggtggaggttgcaatgagctgagactgcaccactgcactccagcctgggtgacagag-cagactccatctca-aaaaaaaaaaaagaaaaa----agaaTGaggtgaca i manLeu1.NW_012102031v1 I 13 C 0 s colAng1.NW_012115588v1 900134 377 + 1946073 CCTGCTGAGAATCACTATGCCTGTATCTCAAGTAAAGT--GGTGTCCAGG-TAAGAATGAATGAGGTGAggctggtctcggtggctcacacctgtaatcccagcactttgggaggctgaggatggtgggtcacctgaagtcagaagtttgaaaccagactggccaacatggcgaaaccaatcactactaaaaagacaaaaattagccaggggtggtactgggtgcctgtaatcccagctactcaggaagctgatgcacgagaattgcttgaactcgggaggtggaggttgcaatgagctgagattgcactactgcactccagcctgggtgacagag-tagactccatctca-aaaaaaaaaaaaaaaaaa----aaaaaagaaTGA-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1929241 368 - 2117846 CCTGCTGAGAATCACTATGCCTGTATCTCAAGTAAAGTCAGGTGTCCAGGTTAAGAATCAATGAGGTGAggctgggcgtggtggctcatgcctttaataccagaatcttgagaggctggggctggtggatcgcctaagatcaggagtttgaaagcagcctggccaacatggtgaaacctaagcctactaaaacgacaaacataaacggggtatggtggtgaatgcctgtaatcccagctacttgggaagctgaggcacgagaattgcttgaacccaagaggcggaggttgcagttagctgagatgtcaccaccacgctccagcctggatgacagagacagagtgtgtatc---------caaaaaaaaag----agaaTGA------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8844293 363 - 16357246 CCTGCTGAGAATCACTATGCCTGTATCTCAAGTAAAGTCAGATGTCCAGG-TAAGAATCAATGAAGTGAggctgggcgtggtggctcatgcctgtaatcccagaatcttgagaggctggggctggtggatcgccgaaggtcaggagtttgaaaccaggctggccaacatggtgaaacctatgtctactaaaaggacaaacattaaccaggtacggtggtgaatgcctgtaatcccagctactcgggaagctgaggcacgagaattgcttgaacccaggaggtggaggttgcagttagctgagatggcaccaccacacgccaacctggatgacagagacagactgcgtatc-------------aaaaaaa----agaaTGA------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1325098 368 - 1807191 CCTGCTGAGAATCACTATGCCTGTATGTCAAGTAAAGTCAGATGTCCAGG-TAAGAATCAATGAAGTGAggctgggcgtggtagctcatgcctataatcccagaatcttgagaggctggggctggtggatcgcctaaggtcaggagtttgaaaccagcctggccaacatggtgaaacctatgtctactaaaaggacaaacattaaccaggtacggtggtgaatgcctgtaatcccagctactcgggaagctgaggcacgagaatcgcttgaacccaggaggtggaggctgcagtgagctgagatggcaccaccacacgccagcctggatgacagagaca----gtgtatca----aaaaaaaaaaaaaaa----aaaaTGA------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 4394 370 + 5963231 CCTGCTGAGAATCACTATGCCTGTATCTCAAGTAAAGTCAGATGTCCAGG-TAAGAATCAATGAGGTGAggctgggcgtggtggctcatgcctgtaatcccagaatcttgagaggctggggctggcggatcgcctaaggtcaggagtttgaaacaagcctggccaacatggtgaaacctatgtctactaaaaggacaaacattaaccgggtatggtggtgaatgcctgtaatcccatctactcgggaagctgaggcacgagaatcgcttgaacccaggaggcagaggttgcagtgagctgagatgacaccagcacacgccagcctggatgacagagacagcctgtgtatc------caaaaaaaaaaaaa----agaaTGA------- i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076944 4986 - 69331447 T e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I a score=339363.000000 s hg38.chr22_GL383582v2_alt 59917 49 + 162811 Aggtgaggggtga-------ggggtgaggggtgagCACTGACATCAGGCAGGTGAC s panTro5.chr22 28840252 42 + 37823149 AGGTGAGGGGTGA-------GGGGTGAG-------CGCTGACATCAGGCAGGTGAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41114509 42 + 50109623 AGGTGGAGGGTGA-------GGGGTGAG-------CGCTGACATCAGGCAGGTGAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3136894 41 + 4464012 AGGTGAGGGGTG--------GGGGTGAG-------CGCTGACATCAGGCAGGTGAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106634306 35 - 115148730 AGGTGA--------------GGGGTGAG-------CACTGACATCAGGCAGGTGAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84248769 42 + 92844088 gggtgacaggtga-------ggggtgag-------cgctgacatcaggcaggtgac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87593709 42 - 96509753 gggtgacaggtga-------ggggtgag-------cgctgacatcaggcaggtgac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7085749 42 - 13098629 gggtgacaggtga-------ggggtgag-------cgctgacatcaggcgggtgac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4052285 42 - 4483953 gggtgacaggtga-------ggggtgag-------cgctgacatcaggcaggtgac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683092 42 + 33263144 AGGTGACAGGTGA-------GGGGTGAG-------CGCTGACATCAGGCAGGTGAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13947069 42 - 14338769 gggtgacaggtga-------ggggtgag-------cgctgacatcaggcaggtgac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 900511 41 + 1946073 -GGTGACGAGTGA-------GGGGTAAG-------CGCTGATATCAGGCAGGTGAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1929609 33 - 2117846 -GGTG---------------GGGATGAG-------CACTGACATCAAGCAGGTGAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8844656 33 - 16357246 -GGTG---------------GGGGTAAG-------CACTGACATCAGGCAGGTGAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1325466 33 - 1807191 -GGTG---------------GGGGTAAG-------CGCTGACATCAGGCAGGTGAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 4764 33 + 5963231 -AGTA---------------GGGGTGAG-------CACTGACATCAGGCAGGTGAC i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46071958 49 - 69331447 AGATAGGGATGGAGCAGGCTGGGGTCAG-------GGCTGGGTCTGGGGAGGCCGC i canFam3.chr10 T 4986 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e otoGar3.GL873526 36264111 4815 - 42659167 T e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I a score=330737.000000 s hg38.chr22_GL383582v2_alt 59966 41 + 162811 TGACGACCCAACACAACCAGGACCTTGGCA-GGGGCCCAGAC s panTro5.chr22 28840294 41 + 37823149 TGACGACCCAACACAACCAGGACCTTGGCA-GGGGCCCAGAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41114551 41 + 50109623 TGACGACCCAACACAACCAGGACCTTGGCA-GGGGCCCAGAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3136935 41 + 4464012 TGACGACCCAACACAACCAGGACCTTGGCA-GGGGCCCAGAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106634341 41 - 115148730 TGACGACCCAACACAACCAGGACCTTGGCA-GGGGCCCAGAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84248811 34 + 92844088 T-------CAACACAACCAGGACCTTGGCA-GGGGCCCAGAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87593751 34 - 96509753 T-------CAACACAACCAGGACCTTGGCA-GGGGCCCAGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7085791 34 - 13098629 T-------CAACACAACCAGGACCTTGGCA-GGGGCCCAGAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4052327 34 - 4483953 T-------CAACACAACCAGGACCTTGGCA-GGGGCCCAGAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683134 34 + 33263144 T-------CAACACAACCAGGACCTTGGCA-GTGGCCCAGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13947111 34 - 14338769 T-------CAACACAACCAGGACATTGGCA-GGGGCCCAGAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 900552 34 + 1946073 T-------CAACACAACCAGGACCTTGGCA-GGGGCCCAGAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1929642 41 - 2117846 AGATGACTCAACACAACCAGGGCCTTGGCA-AGAGCCCAAAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8844689 41 - 16357246 AGATGACCCAACACAACCAGGGCCTTGGCA-AGAGCCCAAAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1325499 41 - 1807191 ATATGACCCAACACAACCAGGGCCTTGGCA-AGAGCCCAAAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 4797 41 + 5963231 AGATGACCCAACACAACCAGGGCCTTGGCA-AGAGCCCAAAC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36259296 41 - 42659167 TGAGGCCCCATGGCAGTGAGGGGCTGGTCA-GGGGTCCAGGT i otoGar3.GL873526 T 4815 C 0 s canFam3.chr10 46072007 41 - 69331447 TGCGGCCCCTTCGCCACCGGCGGCTGGTCAGGGGGCCCTGA- i canFam3.chr10 C 0 C 0 e mm10.chr15 82782242 7845 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I a score=619915.000000 s hg38.chr22_GL383582v2_alt 60007 69 + 162811 TGGATACAGAAACCAAGTGGGAGCCACTAGACTAATTTATTGTACAACAG--GGTC---CCAG----CTGAGGAGCAA s panTro5.chr22 28840335 69 + 37823149 TGGATACAGAAACCAAGTGGGAGCCACTAGACTAATTTATTGTACAACAG--GGTC---CCAG----CTGAGGAGCAA i panTro5.chr22 C 0 I 20 s panPan2.chr22 41114592 69 + 50109623 TGGATACAGAAACCAAGTGGGAGCCACTAGACTAATTTATTGTACAAGAG--GGTC---CCAG----CTGAGGAGCAA i panPan2.chr22 C 0 I 407 s gorGor5.CYUI01015375v1 3136976 69 + 4464012 TGGATACAGAAACCAAGTGGGAGCCACTAGACTAATTTATTGTACAACAG--GGTC---CCAG----CTGAGGAACAA i gorGor5.CYUI01015375v1 C 0 I 20 s nomLeu3.chr7b 106634382 69 - 115148730 TGGATACAGAAACCAAGTGGGAGCCACTAGACTAATTTATTGTACAACAG--GGTC---CCAG----CTGAGGAGCAA i nomLeu3.chr7b C 0 I 20 s rheMac8.chr10 84248845 69 + 92844088 TGGATTCAGAAACCAAGTGGGAGCCACTAGATTCATTTTCTGTACAACAG--GGTC---CCAG----CTGAGGAGCAA i rheMac8.chr10 C 0 I 22 s macFas5.chr10 87593785 69 - 96509753 TGGATTCAGAAACCAAGTGGGAGCCACTAGATTCATTTTCTGTACAACAG--GGTC---CCAG----CTGAGGAGCAA i macFas5.chr10 C 0 I 22 s macNem1.NW_012012688v1 7085825 69 - 13098629 TGGATTCAGAAACCAAGTGGGAGCCACTAGATTCATTTTCTGTACAACAG--GGTC---CCAG----CTGAGGAGCAA i macNem1.NW_012012688v1 C 0 I 22 s cerAty1.NW_011999588v1 4052361 69 - 4483953 TGGATTCAGAAACCAAGTGGGAGCCACTAGATTCATTTTCTGTACAACAG--GGTC---CCAG----CTGAGGAGCAA i cerAty1.NW_011999588v1 C 0 I 22 s chlSab2.chr19 24683168 69 + 33263144 TGGATTCAGAAACCAAGTGGGAGCCACTAGATTCATTTTCTGTACAACAG--GGTC---CCAG----CTGAGGAGCAA i chlSab2.chr19 C 0 I 20 s manLeu1.NW_012102031v1 13947145 69 - 14338769 TGGATTCAGAAACCAAGTGGGAGCCACTAGATTCATTTTCTGTACAACAG--GGTC---CCAG----CTGAGGAGCAA i manLeu1.NW_012102031v1 C 0 I 22 s colAng1.NW_012115588v1 900586 71 + 1946073 TGGATTCAGAAACC-AGTGGGAGCCACTAGATTCATTTTTGGTACAACAT--TTTCGGTACAA----CTGAGGAGCAA i colAng1.NW_012115588v1 C 0 I 20 s calJac3.chrUn_GL286373 1929683 76 - 2117846 TGGATTCAGTAACCAAGTGGGAGCCTCTAGACTAATTTATTGTACAAGAG--GCACAAGTCAGGGGCTTGATGCCCAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8844730 76 - 16357246 TGGATTCAGAAACCAAGTGGGAGCCTCTAGACTAATTTATTGTACAAGAG--GAGCAGGTCATGGGCTTGATGCCCAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1325540 76 - 1807191 TGGATTCAGAAACCAAGTGGGAGCCTCTAGACTAATTTATTATACAAGAG--GAGCAAGTCAGGGGCTTGATGCCCAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 4838 76 + 5963231 TGGATTCAGAAACCAAGTGGGAGCCTCTAGACTAATTTATTGTACAAGAG--GAACAAGTCAGGGGCTTGATGCCCAA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36259337 52 - 42659167 TGGGGTAAG------------------CACATTGGTTTATTGCACGTCAG--GGTC---CCTGG---CTGGGGAACAG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82790087 71 + 104043685 TGGACCAAGAATCTGAGTTGCAGACACAGAACTTGTTTATTGAACACCAATCAGGC---CAAA----CTTGGGGGAAG i mm10.chr15 I 7845 I 17 s canFam3.chr10 46072048 67 - 69331447 GGGACTCGGAAGCCAGGATGGAGCCACCAAACTGGTTTATTGTACCTC----GGCC---CCTG----CTGAGGAgccg i canFam3.chr10 C 0 I 32 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I a score=11504.000000 s hg38.chr22_GL383582v2_alt 60076 1 + 162811 C s panTro5.chr22 28840424 1 + 37823149 C i panTro5.chr22 I 20 C 0 s gorGor5.CYUI01015375v1 3137065 1 + 4464012 C i gorGor5.CYUI01015375v1 I 20 C 0 s nomLeu3.chr7b 106634471 1 - 115148730 C i nomLeu3.chr7b I 20 C 0 s rheMac8.chr10 84248936 1 + 92844088 C i rheMac8.chr10 I 22 C 0 s macFas5.chr10 87593876 1 - 96509753 C i macFas5.chr10 I 22 C 0 s macNem1.NW_012012688v1 7085916 1 - 13098629 C i macNem1.NW_012012688v1 I 22 C 0 s cerAty1.NW_011999588v1 4052452 1 - 4483953 C i cerAty1.NW_011999588v1 I 22 C 0 s chlSab2.chr19 24683257 1 + 33263144 C i chlSab2.chr19 I 20 C 0 s manLeu1.NW_012102031v1 13947236 1 - 14338769 C i manLeu1.NW_012102031v1 I 22 C 0 s colAng1.NW_012115588v1 900677 1 + 1946073 C i colAng1.NW_012115588v1 I 20 C 0 s calJac3.chrUn_GL286373 1929759 1 - 2117846 C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8844806 1 - 16357246 C i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1325616 1 - 1807191 C i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 4914 1 + 5963231 C i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36259389 1 - 42659167 T i otoGar3.GL873526 C 0 I 20 s canFam3.chr10 46072147 1 - 69331447 C i canFam3.chr10 I 32 C 0 e mm10.chr15 82790158 17 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I e panPan2.chr22 41114661 407 + 50109623 I a score=656047.000000 s hg38.chr22_GL383582v2_alt 60077 64 + 162811 TCTAGCGGGGCACAGCACAAAGCTCATAGGGGGATGGCGTCACCAGAAAGCCGACGACACGAGA s panTro5.chr22 28840425 64 + 37823149 TCTAGCGGGGCACAGCACAAAGCTCATAGGGGGATGGCGTCACCAGAAAGCCGACGACACGAGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115068 64 + 50109623 TCTAGCGGGGCACAGCAAAAAGCTCGTAGGGGGATGGGGTCACCAGAAAGCTGACGACACGAGA i panPan2.chr22 I 407 C 0 s gorGor5.CYUI01015375v1 3137066 64 + 4464012 TCTAGCGGGGCACAGCACAAAGTTCGTAGGGGGATGGCGTCACCAGAAAGCTGACGACACGAGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106634472 64 - 115148730 TCTAGCGGGGCACAGCACAAAGCTCGTAGTGGGGTGGTGTCACCAGAAAGCCGACGACACGAGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84248937 64 + 92844088 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGATGGGGTCACCAGAAAGCCAACGACATGAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87593877 64 - 96509753 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGAAGGGGTCACCAGAAAGCCAACGACATGAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7085917 64 - 13098629 TCTAGCGGGGCACGGCACAAAGCTCGTAGGGGGAAGGGGTCACCAGAAAACCAAAGACACCAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4052453 64 - 4483953 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGAAGGGGTCACCAGAAAGCCAACGACATGAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683258 64 + 33263144 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGATGGGGTCACCAGAAAGCCGACCACATGAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13947237 64 - 14338769 TCTAGTGGGGCACAGCACAAAGCTCGTAGGGGGAAGGGGTCACCAGAAAGCCAACGACATGAGA i manLeu1.NW_012102031v1 C 0 I 10212 s colAng1.NW_012115588v1 900678 61 + 1946073 TCTAGCGGGGCACAGCACAAAGCTTGTAGGGGGATGGGGTCACCAGAAAGCCA---ACATGAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1929760 64 - 2117846 TCTAGCGGGGCACAGCACAAAGCTGGTAGGGGGAAGGATACACCAGAAAGCCACCGACAGGCAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8844807 64 - 16357246 ACTAGCGGGGCACAGCACAAAGCTGGTAGGGGGAAGGATACACCAGAAAGCCACCGGCAGGCGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1325617 64 - 1807191 TCTAGCGGGGCACAGCACAAAGCTGGTAGGGAGAAGGATACACCAGAAAGCCACCAGCAGGCGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 4915 64 + 5963231 TCTAGCGGGGCACAGCACAAAGCTGGAAGGGGGAAGGATACACCAGAAAGCCACCGACAGGCGA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36259410 64 - 42659167 TCTAGCGGGGCACAGCACAAAGCTGGTAAGGGACAGGGCTAACCAGGAAGGCAAAGACACCATG i otoGar3.GL873526 I 20 C 0 s mm10.chr15 82790175 64 + 104043685 GCTATCGAGCCACTGCACAGAGCTGATAGGGCTCTGGAGTAACTGGCATTGTATAGATGCCATA i mm10.chr15 I 17 C 0 s canFam3.chr10 46072148 64 - 69331447 CCTAGGGAGGGTCCCCCCAAAACTGGAAAGGGGCTGGAACCTTTCGGAAGGGGAAAACCCCCTG i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I a score=25209.000000 s hg38.chr22_GL383582v2_alt 60141 3 + 162811 GTG s panTro5.chr22 28840489 3 + 37823149 GTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115132 3 + 50109623 GTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137130 3 + 4464012 GTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106634536 3 - 115148730 GTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84249001 3 + 92844088 GTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87593941 3 - 96509753 GTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7085981 3 - 13098629 GTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4052517 3 - 4483953 GTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683322 3 + 33263144 GTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13957513 3 - 14338769 GTG i manLeu1.NW_012102031v1 I 10212 C 0 s colAng1.NW_012115588v1 900739 3 + 1946073 GTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1929824 3 - 2117846 GTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8844871 3 - 16357246 GTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1325681 3 - 1807191 GCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 4979 3 + 5963231 GTT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36259474 3 - 42659167 GTC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82790239 3 + 104043685 ATC i mm10.chr15 C 0 C 0 s canFam3.chr10 46072212 3 - 69331447 GTC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5674715 13510 + 108171978 I a score=1963953.000000 s hg38.chr22_GL383582v2_alt 60144 132 + 162811 GCTGGGCCGGGGCTGTCCGGTGGGCACCGAGAAGCTGAAGTGCTGCAGCAGGGAGGTGAAGAAGAGGAAGAGCTCTATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGT-----GGGGAGGGGAGGGGC- s panTro5.chr22 28840492 132 + 37823149 GCTGGGCCGGGGCTGTCCGGTGGGCACCGAGAAGCTGAAGTGCTGCAGCAGGGAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGGAGGGGAGGGGC- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115135 132 + 50109623 GCTGGGCCGGGGCTGTCCGGCGGCCACAGAGAAGCTGAAGTGCTGCAGCAGGGAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGGAGGGGAGGGGC- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137133 132 + 4464012 GCTGGGCCGGGGCTGTCCGGTGGGCACGGAGAAGCTGAAGTGCTGCAGCAGGGAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGGAGGGGAGGGGT- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106634539 132 - 115148730 GCTGGGCCGGGGCTGTCCGGTGGGCACCGAGAAGCTGAAGCGATGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGGAGGGGAGGGGC- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84249004 137 + 92844088 GCTGGGCCGGGGCCGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCCCGGCGGCCTGTGGGGAGGGGAGGGGAGGGGT- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87593944 137 - 96509753 GCTGGGCCGGGGCCGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGTGGGGAGGGGAGGGGAGGGGT- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7085984 137 - 13098629 GCTGGGCCGGGGCTGTCCGGCGGGCGCCGAGAAGCTGAAACGTTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGTGGGGAGGGGAGGGGAGGGGT- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4052520 132 - 4483953 GCTGGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGT-----GGGGAGGGGAGGGGT- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683325 137 + 33263144 GCTGGGCCTGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATACGGGCCAGGGGCTCCCCAAGGCATGCACGGCGGCCTGTGTGGAGGGGAGGGGAGGGGT- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13957516 132 - 14338769 GCTGGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGT-----GGGGAGGGGAGGGGT- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 900742 137 + 1946073 GCTGGGCCTGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATATGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGTGGGGAGGGGAGGGGAGGGGT- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1929827 132 - 2117846 ACTGGGCCGGGGCTGTCCGGCGGGCACAGAGAAGCTGAAGCGCTGTAGCAGGCAGGTGAAGAACAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGTAGGGGAGGGGC- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8844874 132 - 16357246 ACTGGGCCGGGGCTGTCCAGTGGGCACGGAGAAGCTGAAGCGCTGCAGCAGGTGGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTAT-----GGGTAGGGGAGGGTC- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1325684 132 - 1807191 ACTGGGCCGGGGCTGTCCGGTGGGCACGGAGAAGCTGAAGTGCTGCAGCAGGTGGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGT-----GGGTAGGGGAGGGGC- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 4982 132 + 5963231 ACTGGGCCGGGGCTGTCCAGCGGGCACGGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGTAGGGGAGGGGC- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5688225 132 + 108171978 GCTGGGCCGGGGGTGCCCTGGAGGCACGGAGAAGCTGAAGCGCTGCAGGAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCACGCGCGGCGGCCTGT-----GGGTGGGCAAGGGGG- i micMur3.chr7 I 13510 I 2 s otoGar3.GL873526 36259477 131 - 42659167 GCTGGGCGGGGAGTGTTCGGGAGGCACCGAGAAGCTAAAGCGCTGCAGGAGGCAAGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGCGGCTCCCCCAGGCATGCACGGCGGCCTGT-----GGGTGGG-AAGGGGG- i otoGar3.GL873526 C 0 I 37 s mm10.chr15 82790242 131 + 104043685 ACTGGGTCTGGGCTGTCCATCGGGCACTGAGAAGCTAAAGCGCTGCAGGAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCCAGGCATGATCTGCGGCCTGT-----GGGTGGGAGAGGGT-- i mm10.chr15 C 0 C 0 s canFam3.chr10 46072215 133 - 69331447 CCTGGGCCCGGGCTTCCCCCCAGGGCCTGAAAAACTTAAACCCTTCCGGAGGGAGGGGAAAAAAAAGAAAAACTCCCTGCGGGCCAGGGGCTCCCCCAAGGAAAACCGGCGGCCTTC-----GGGTGGGGAAAGAACC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=375621.000000 s hg38.chr22_GL383582v2_alt 60276 39 + 162811 GTCAGTGAGCCTGG-CTCCCGGGTGATAC----CCCTGCAAGAC s panTro5.chr22 28840624 39 + 37823149 GTCAGTGAGCCTGG-CTCCCGGGTGATAC----CCCTGCAAGAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115267 40 + 50109623 GTCAGTGAACCTGGCCTCCTGGGTGATAC----CCCTGCAAGAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137265 39 + 4464012 GTCAGTGAGCCTGG-CTCCTGGGTGATAC----CCCTGCAAGAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106634671 39 - 115148730 GTCAGTGAGCCTGG-CTCCCAGGCGATAC----CCCTGCAAGAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84249141 39 + 92844088 GTCAGTGAGCCTGC-CTCCCGGGCAGGAC----CCCTGCAAGAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594081 39 - 96509753 GTCAGTGAGCCTGC-CTCCCGGGCAGGAC----CCCTGCAAGAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086121 39 - 13098629 GTCAGTGACCCTGC-CTCCCGGGCAGGAC----CCCTGCAAGAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4052652 39 - 4483953 GTCAGTGAGCCTGC-CTCCCAGGCAGGAC----CCCTGCAAGAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683462 39 + 33263144 GTCAGTGAGCCTGG-CTTCCAGGCAATAC----CCCTGCAAGAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13957648 39 - 14338769 GTCAGTGAGCCTGC-CTCCCAGGCAGGAC----CCCTGCAAGAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 900879 39 + 1946073 GTCAGTGAGCCTGG-CTCCCAGGCAATAC----CCCTGCAAGAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1929959 39 - 2117846 CTCAGTGAGCATGG-GTCCCGGGCGATAC----CCCTGCAAGAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845006 39 - 16357246 CTCAGTGAGCATGG-GTCCCGGGCGATAC----CCCTGCAAGAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1325816 39 - 1807191 CTCAGTGAGCATGG-GTCCCAGGCGATAC----CTCTGCAAGAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5114 39 + 5963231 CTCAGTGAGCCTGG-GTCCCGGGCGATAC----CCCTGCAAGAC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5688359 39 + 108171978 ATCAGTGTCCCTGG-GTCCTGGGCTCTAC----CCTCCCAAGAC i micMur3.chr7 I 2 C 0 s mm10.chr15 82790373 42 + 104043685 -TCAGTTAGTCTAG-GACCTCATTGGGGCTTCACCCTCCAAGGC i mm10.chr15 C 0 C 0 s canFam3.chr10 46072348 38 - 69331447 CCCAAAAAACCCGG-GGCCTGGGCCCAAC----CTCCAAAAAT- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e otoGar3.GL873526 36259608 37 - 42659167 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=1489702.000000 s hg38.chr22_GL383582v2_alt 60315 104 + 162811 TCCACGGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCCAGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTC s panTro5.chr22 28840663 104 + 37823149 TCCACGGATGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115307 104 + 50109623 TCCACGGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCCGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137304 103 + 4464012 TCCACAGAAGGGAA-AGGGAGCCGGACTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCCGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106634710 104 - 115148730 TCCACGGAAGGGGACAGGGAGCTGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTC i nomLeu3.chr7b C 0 T 11473 s rheMac8.chr10 84249180 104 + 92844088 TCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGCGGCCCTGAGCATCCAGGAAGTGTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594120 104 - 96509753 TCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGCGGCCCTGAGCATCCAGGAAGTGTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086160 104 - 13098629 TCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGGAAGTGTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4052691 104 - 4483953 TCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGAAAGTGTTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683501 104 + 33263144 TCCATGGAAGCAGGCAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGGAAGTGTTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13957687 104 - 14338769 TCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGAAAGTGTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 900918 104 + 1946073 TCTATGGAAGCAGGCAGGGAGCCGGGCTCCCCACAGACACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1929998 103 - 2117846 TCCACGGAAGGG-ATAGGGAGCCAGGCACCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGCGGCCCTGGGCATCCAGGAAGTGTTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845045 103 - 16357246 TCCACGGAAGGG-ACAGGGAGCCGGGCACCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGCGGCCCTGGGCATCCAGGAAGTGTTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1325855 102 - 1807191 TCCACAGAAGGG--CAGGGAGCCAGGCACCCTACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGCGGCCCTGGGCATCCAGGAAGTGTTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5153 102 + 5963231 TCCACAGAAGGG--CAGGGAGCCGAGCACCCTACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGCGGCCCTGGGCATCCAGGAAGTGTTC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5688398 104 + 108171978 TCCATGGAAGAGGGCAGGGGGTGGGGCAGCCCACAGGCACCTGCTGAGAAGGGCATGAAGGCCTCGGGCTTCACAAAGCGACCCTGAGAGTCCAAGAAGTGTTC i micMur3.chr7 C 0 C 0 s otoGar3.GL873526 36259645 104 - 42659167 TGCATGGGAGGGGACAAGGAGCTAGGCAGCCCCCAGGCACCTGCAGAGAAAGGCATGAAGGCCTCTGGCTTCATGAAGCGACCCTGGGCGTCCAGGAAGTGCTC i otoGar3.GL873526 I 37 C 0 s mm10.chr15 82790415 104 + 104043685 ACCCTGAGAAAAGACAGGCAGCCAAGTAGCCTGCAGTCACCTGCTGAGAATGGCATGAAGGCCTCGTGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTC i mm10.chr15 C 0 C 0 s canFam3.chr10 46072386 100 - 69331447 CCCTCTGAAGGG-GTGGGAAACCGGGGACCCCCC---CACCTTCAAAAAAAGGCATTAAGGCCCTATGCTTGAAAAAAAGGCCCTGGGGGTCCCAGAAATGCTC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=277659.000000 s hg38.chr22_GL383582v2_alt 60419 18 + 162811 GGGGTGGAAGCGGAAGGG s panTro5.chr22 28840767 18 + 37823149 GGGGTGGAAGTGGAAGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115411 18 + 50109623 GGGGTGGAAGTGGAAGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137407 18 + 4464012 GGGGTGGAAGAGGAAGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623341 18 - 115148730 GGGGTGGAAGCGGAAGGG i nomLeu3.chr7b T 11473 C 0 s rheMac8.chr10 84249284 18 + 92844088 GGGGTGGAAGCGGAAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594224 18 - 96509753 GGGGTGGAAGCGGAAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086264 18 - 13098629 GGGGTGGAAGCGGAAGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4052795 18 - 4483953 GGGGTGGAAGCGGAAGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683605 18 + 33263144 GGGGTGGAAGCGGAAGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13957791 18 - 14338769 GGGGTGGAAGCGGAAGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901022 18 + 1946073 GGGGTGGAAGCAGAAGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930101 18 - 2117846 GGGGTAGAAGCAGAAAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845148 18 - 16357246 GGGGTAGAAGCAGAAAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1325957 18 - 1807191 AGGGTGGAAGCGGAAGGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5255 18 + 5963231 AGGGTGGAAGCAGAAAGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5688502 18 + 108171978 GGGGTGGAAGCGGAAGGG i micMur3.chr7 C 0 C 0 s otoGar3.GL873526 36259749 18 - 42659167 AGGGTGGAAGCGGAAGGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82790519 18 + 104043685 AGGATAGAAGCGGAGGGG i mm10.chr15 C 0 C 0 s canFam3.chr10 46072486 18 - 69331447 CGGGTAAAAACGGAAAGG i canFam3.chr10 C 0 M 283 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=1012817.000000 s hg38.chr22_GL383582v2_alt 60437 75 + 162811 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCATCAT-CCCCTGGGCAGGAGATGC s panTro5.chr22 28840785 75 + 37823149 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCATCAT-CCCCTGGGCAGGAGATGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115429 75 + 50109623 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGT-GCCCTGGGCAGGAGATGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137425 75 + 4464012 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTTGT-CTCCTGGGCAGGAGATGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623359 75 - 115148730 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGTGTCGT-CCCCTGGGCAGGAGATGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84249302 75 + 92844088 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGT-CCCCTGGGCAGGAGATGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594242 75 - 96509753 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGT-CCCCTGGGCAGGAGATGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086282 75 - 13098629 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGT-CCCCTGGGCAGGAGATGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4052813 75 - 4483953 CTTCTCCCAGACGGCCTCATCCTTCAGCACTGATGACAGGTTGGTGAAGAGCGTCGT-CCCCTGGGAAGGAGATGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683623 75 + 33263144 TTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGT-CCCCTGGGCAGGAGATGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13957809 74 - 14338769 CTTCTCCCAGACGGCCTCATCCTTCAGCA-CGATGACAGGTTGGTGAAGAGCGTCGT-CCCCTGGGAAGGAGATGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901040 75 + 1946073 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGT-CCCCTGGGCAGGAGGGGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930119 75 - 2117846 CTTCTTCCAGATGGCCTCATCCTTCAGCACTGATGACAGGTTGGCGAAGATCGCTGT-CCCCTGGGTAGGAGAGGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845166 75 - 16357246 CTTCTCCCAGATGGCCTCATCCTTCAGCACTGATGACAAGTTGGCGAAGATCGCTGT-CCCCTGGGTAGGAGAGGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1325975 75 - 1807191 CTTTTCCCAGATGGCCTCATCCTTCAGCACTGATGACAGGCTGGCGAAGATCGCTGT-CCCCTGAGTAGGAGAGGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5273 76 + 5963231 CTTCTCCCAGATGGCCTCATCTTTCAGCACTGATGACAGGTTGGCGAAGATCATTGTCCCCCTAGGTAGGAGAGAT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5688520 75 + 108171978 CTTCTCCCAGACCGCCTCGTCCTTCAGCACTGATGACAGGTTGGTGAGGAGTGTTGT-CCCCTGGGAAAGAGATGC i micMur3.chr7 C 0 I 369 s otoGar3.GL873526 36259767 75 - 42659167 CTTCTCCCAGACTGTCTCGTCCTTCAGAACTGATGACAGGTTGGTGAGGAGAAGTGT-CCCCTGGGCAGGAGACAC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82790537 74 + 104043685 CTTCTCCCAGACAGTCTCATCCTTCAGCACGGAGGACAGGTTGGGAATGAGTGTCGT-CCCCT-GGCAGGAGGCAC i mm10.chr15 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46072504 283 - 69331447 M e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=404125.000000 s hg38.chr22_GL383582v2_alt 60512 37 + 162811 AGGGTGAGAGTGGGGACTGGACT--------CTAGGATGCTGGGA s panTro5.chr22 28840860 37 + 37823149 AGGGTGAGAGTGGGGACTGGGCT--------CTAGGATGCTGGGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115504 37 + 50109623 AGGGTGAGAGTGGGGACTGGGCT--------CTAGGATGCTGGGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137500 37 + 4464012 AGGGTGAGAGTGGGGACTGGGCT--------CTAGGATGCTGGGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623434 37 - 115148730 AGGGCGAGAGTGGGGACTGGGCT--------CTAGGATGCTGGGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84249377 37 + 92844088 AGAGTGAGAGCGGGGACTGGGCT--------CTAGGATGGTGGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594317 37 - 96509753 AGGGTGAGAGTGGGGACTGGGCT--------CTAAGATGGTGGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086357 37 - 13098629 AGAGTGAGAGTGGGGACTGGGCT--------CTAGGATGGTGGGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4052888 37 - 4483953 AGGGTGAGAGTGGGGACTGGGCT--------CTAGGATGGTGGGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683698 37 + 33263144 AGGGTGAGAGTGGGGACGGGGCT--------CTAGGATGCTGGGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13957883 37 - 14338769 AGGGTGAGAGTGGGGACTGGGCT--------CTAGGATGGTGGGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901115 37 + 1946073 AGGGTGAGAGTGGGGACTGGGTT--------CTAGGATGCTGGGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930194 37 - 2117846 AGGGAGAGAGTAAGGACTGGGAT--------CTAGGATGCTGGGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845241 37 - 16357246 AGGGTGAAAGTAAGGACTGGGCT--------CTAGGATGCTGGGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326050 37 - 1807191 AGGGTGAGAGTAAGGACTGGGCT--------CTAGGATGCTGGGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5349 37 + 5963231 AGGGTAAGAGTAAGGACTGGGCT--------CTAGGATGCTGGGA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36259842 37 - 42659167 CTAGTGTGAGTGGTGACTAGGCT--------TCAGGATGCTGGGA i otoGar3.GL873526 C 0 I 16 s mm10.chr15 82790611 42 + 104043685 ATGGTGTGAAGATGGGCCAGGGTGGGCCTGCCTAGGTCGTGG--- i mm10.chr15 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46072504 283 - 69331447 M e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5688595 369 + 108171978 I a score=127408.000000 s hg38.chr22_GL383582v2_alt 60549 10 + 162811 CCC------CCAAGCA s panTro5.chr22 28840897 10 + 37823149 CCC------CCAAGCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115541 16 + 50109623 CCCCTGCCACCAAACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137537 10 + 4464012 CCC------CCAAGCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623471 16 - 115148730 CCCCTGCCACCAAACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84249414 16 + 92844088 CCCCTGCCACCAAACG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594354 16 - 96509753 CCCCTGCCACCAAACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086394 16 - 13098629 CCCCTGCCACCAAACG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4052925 16 - 4483953 CCCCTGCCACCAAACG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683735 16 + 33263144 CCCCTGCCACCAAACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13957920 16 - 14338769 CCCCTGCCACCAAACG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901152 16 + 1946073 CCCCTGCCACCAAACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930231 16 - 2117846 CCCCTGCCACCAAACA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845278 16 - 16357246 CCCCTGCCACCAAACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326087 16 - 1807191 CCCCTGCCACTAAACA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5386 16 + 5963231 CCCCTGCCACCAAACA i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82790653 10 + 104043685 ------TCACCAAGTT i mm10.chr15 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46072504 283 - 69331447 M e otoGar3.GL873526 36259879 16 - 42659167 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5688595 369 + 108171978 I a score=540235.000000 s hg38.chr22_GL383582v2_alt 60559 55 + 162811 CACAGGGGACACACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCTGTG s panTro5.chr22 28840907 55 + 37823149 CACAGGGGACACACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCTGTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115557 55 + 50109623 CATGGGGGACACACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCTGCG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137547 55 + 4464012 CACAGGGGACACACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCTGCG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623487 55 - 115148730 CACGGGGGACATACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCTGTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84249430 55 + 92844088 CACGGGGGACACACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCGGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594370 55 - 96509753 CACGGGGGACACACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCGGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086410 55 - 13098629 CACGGGGGACACACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCGGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4052941 55 - 4483953 CACGGGAGACACATACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCAGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683751 55 + 33263144 CACAGGGGGGACACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCGGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13957936 55 - 14338769 CATGGGGGACACATACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCGGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901168 55 + 1946073 CACGGGGGACACACACTGCCTGGCACACAGCTGGACTCTGTCAATTAGTCTGGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930247 51 - 2117846 CATGGGGGATACACATTGCCCGGCACACAGCTAGACTCT----ACTAGTCCTGCG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845294 51 - 16357246 CATGGAGGACACACACTGCCTGGCACACAGCTGGACTCT----ACTAGTCCTGCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326103 51 - 1807191 CATGGGGGACACACACTGCCTGGCACACAGCTGGACTCT----ACTAGTCCTGCG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5402 51 + 5963231 CACGGGGGACACACACTGCCTGGCACACAGCTGGACTCT----ACTAGTCCTGCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36259895 54 - 42659167 CACAGGC-ACACATTCTGACTGGCACACACATGGATGCTTAAAAGTAACGCTCAG i otoGar3.GL873526 I 16 C 0 s mm10.chr15 82790663 49 + 104043685 CACAGGC-ACAGCCTCTACCTCACACACG---GGATCCTTGCATTCACTCT--CA i mm10.chr15 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46072504 283 - 69331447 M e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5688595 369 + 108171978 I a score=319927.000000 s hg38.chr22_GL383582v2_alt 60614 25 + 162811 CCCGAGAAGCTCCAGAGCACCCTCT s panTro5.chr22 28840962 25 + 37823149 CCCGAGAAGCTCCAGAGCACCCTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115612 25 + 50109623 CCTGAGAAGCTCCACAGTACCCTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137602 25 + 4464012 CCCGAGAAGCTCCAGAGCACCCTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623542 25 - 115148730 GCCAAGAAGctcctgagctccctct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84249485 25 + 92844088 CCCGAGAAGCTCCTGAGCACCCTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594425 25 - 96509753 CCCGAGAAGCTCCTGAGCACCCTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086465 25 - 13098629 CCCAAGAAGCTCCTGAGCACCCTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4052996 25 - 4483953 CCCAAGAAGCTCCTGAGCACCCTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683806 25 + 33263144 CCCGAAAAGCTCCTGGGCACCCTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13957991 25 - 14338769 CCCGAGAAGCTCCTGAGCACCCTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901223 25 + 1946073 CCCGAGAAGCTCCTGAGCACCCTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930298 25 - 2117846 CCCGAGAAGCTCCTGGGCATCCTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845345 25 - 16357246 CCCGAGAAGCTCCTGGGAAGCCTCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326154 25 - 1807191 CCTGAGAAGCTCCTGGGCAGCCTCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5453 25 + 5963231 CCCGAGAAGCTCCTGGGCATCCTCT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36259949 25 - 42659167 TCCAAGAAGCTTCTTGGCACCCTCT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82790712 25 + 104043685 CCCGTGGAGCCTCTGAGCACCTTCT i mm10.chr15 C 0 C 0 s canFam3.chr10 46072787 25 - 69331447 CCCCAGAAGCTCCTGGGCACCCTCT i canFam3.chr10 M 283 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5688595 369 + 108171978 I a score=10058.000000 s hg38.chr22_GL383582v2_alt 60639 2 + 162811 CC s panTro5.chr22 28840987 2 + 37823149 CC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115637 2 + 50109623 CC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137627 2 + 4464012 CC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623567 2 - 115148730 ct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84249510 2 + 92844088 AT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594450 2 - 96509753 AT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086490 2 - 13098629 AT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053021 2 - 4483953 CT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683831 2 + 33263144 CT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958016 2 - 14338769 CT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901248 2 + 1946073 CT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930323 2 - 2117846 CC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845370 2 - 16357246 CC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326179 2 - 1807191 CC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5478 2 + 5963231 CC i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82790737 2 + 104043685 CT i mm10.chr15 C 0 I 12 s canFam3.chr10 46072812 2 - 69331447 CT i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e otoGar3.GL873526 36259974 0 - 42659167 C e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5688595 369 + 108171978 I a score=504184.000000 s hg38.chr22_GL383582v2_alt 60641 54 + 162811 G-ACCCCATGGCAGGGCGCAGTCACACCT--CCTGGGAGCGCCCACGCTACCCCCTC s panTro5.chr22 28840989 54 + 37823149 G-ACCCCATGGCAGGGCGCAGTCACACCT--CCTGGGGGTGCCCATGCTGCCCCCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115639 55 + 50109623 GAACCCCACAGCAGGGCGCAGTCACACCT--CTCAGAGGCACCCACACTGCCCCCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137629 53 + 4464012 G-ACGCCATGGCAGGGCGCAGTCACACCT--CCT-GGGGCGCCCACGCTGCCCCCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106623569 54 - 115148730 g-accctatggtggggagcagtcacacct--cccgggggcacctaagctgccccctt i nomLeu3.chr7b C 0 I 11493 s rheMac8.chr10 84249512 54 + 92844088 G-ACCCCATGGCAGGGCGCAGTCACACCT--CCTGGGGGTGCCCACACTGCCCCCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594452 54 - 96509753 G-ACCCCATGGCAGGGCGCAGTCACACCT--CCTGGGGGTGCCCACACTGCCCCCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086492 54 - 13098629 G-ACCCCATGGCAGGGCGCAGTCACACCT--CCTGGGGGTGCCCACACTGCCCCCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053023 53 - 4483953 G-ACCCCATGGCAGGGCGCAGTCACACCT--CCT-GGGGCGCCCACGCTGCCCCCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683833 54 + 33263144 G-ACCCCATGGCAGGGCGCAGTCACACCT--CCCAGGGGCGCCCACGCTGCCCCCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958018 53 - 14338769 G-ACCCCATGGCAGGGCGCAGTCACACCT--CCC-GGGGCGCCCACGCTGCCCCCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901250 54 + 1946073 G-ACCCCATGGCAGGGCGCAGTCACACCT--CTCAGGGGTGCCCACGCTGCCCCCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930325 54 - 2117846 A-ACCCCATAATAGGCCCCAGTCACACCT--CCCAGGGGCACCCAGGCTGCCCCCTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845372 54 - 16357246 A-ACCCCATAATATGCCCCAGTCATACCT--CCCAGGGGTGCCCATGCTGCCCCCTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326181 54 - 1807191 A-ACCCTATAATAGGCCCCAGTCACACCT--CTTAGGGGCGCCCACGCTGCCCCCTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5480 54 + 5963231 A-ACCCCATAATAGGCCCCAGTCACACCT--CCCAGGGGCGCCCACGCTGCCCCCTC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36259974 52 - 42659167 G-ACACC-TAGTATAGCTGAGTCTCGCCT--CCTATTAGTGCCTTCCAGGCCCCTA- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82790751 44 + 104043685 G-GCCCTGTGACAAAGT----TCCCATCT------GCAGTGCCTCCTACAACCCC-- i mm10.chr15 I 12 C 0 s canFam3.chr10 46072814 56 - 69331447 G-TCCCCATGGCAGGGCTAAGGGACTCCCCACCCACGGGCGCCCACACGGCCACCCG i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5688595 369 + 108171978 I a score=1010087.000000 s hg38.chr22_GL383582v2_alt 60695 103 + 162811 TCCCTACAGGTATTGGGGTCCTCCAACATTCT--GGCAGGTCCTGGTCTGCCTTCCCCACTAGACTGG-GGCTCTGGATGGACA--------GGCCAGCCCTGCCTATACTCTG s panTro5.chr22 28841043 103 + 37823149 TCCCTATAAGTATTGGGGTCCTCCAACATTCT--GGCAGGTCCTGGTCTGCCTTCCCCACTAGACTGG-GGCTCTGGATGGACA--------GACCAGCCCTGCCTATACTCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115694 102 + 50109623 TCCCTGCAGGCGTT-GGGTCCTCCAACATTCT--GGCAGGTCCTGGTTTGTCTTCCCCACTAGACGGG-GGCTCTGGATGGACA--------GGCCAGCCCTGCCTATACTCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137682 103 + 4464012 TCCCTACAGGTATTGGGGTCCTCCAACATTCT--GGCAGGTCCTGGTCTGTCCTCCCCACTAGACGGG-GGCTCTGGATGGACA--------GGCCAGCCCTACCTATACTCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635116 103 - 115148730 TCCCTACAGGTATTGAAGTCCTCCACCATTCT--GGCAGGTCCTGgtctgtcttccccactagactgg-ggctctggatggaga--------ggccagtcctgcctATACGCTG i nomLeu3.chr7b I 11493 C 0 s rheMac8.chr10 84249566 103 + 92844088 TCCCTACAGGCACTGGGGTCCTCCAATATTCT--GGCAGGTCCTGATCTGTCTTCCCTACTAGACTGG-GGCTCTGTATGGACA--------GGCCAGCCCTGCCTATACTCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594506 103 - 96509753 TCCCTACAGGCACTGGGGTCCTCCAATATTCT--GGCAGGTCCTGATCTGTCTTCCCTACTAGACTGG-GGCTCTGTATGGACA--------GGCCAGCCCTGCCTATACTCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086546 103 - 13098629 TCCCTACAGGCACTGGGGTCCTCCAATATTCT--GGCAGGTCCTGATCTGTCTTCCCTACTAGACTGG-GGCTCTGTATGGACA--------GGCCAGCCCTGCCTATACTCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053076 103 - 4483953 TCCCTACAGGCACTGGGGTCCTCCAATATTCT--GGCAGGTCCTGATCTGTCTTCCCTACTAGACTGG-GGCTCTGTATGGACA--------GGCCAGCCCTGCCTATACTCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683887 103 + 33263144 TCCCTACAGGCACTGGGGTGCTCCAATATTCT--GGCAGGTCCTGATCTGTCTACCCCACTAGACTGG-GGTTCTGTATGGACA--------GGCCAGCCCTGCCTCTACTCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958071 103 - 14338769 TCCCTACAGGCACTGGGGTCCTCCAATATTCT--GGCAGGTCCTGATCTGTCTTCCCTACTAGACTGG-GGCTCTGTATGGACA--------GGCCAGCCCTGCCTATACTCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901304 103 + 1946073 ACCCTACAGGCACTGGGGTCCTCCAATATTCT--GGCAGGTCCTGGTCTGTCTTCCCTACTAGACTGG-GGCTCTAGATGGACA--------GGCCAGCCCTGCCTCTACTCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930379 101 - 2117846 TCCCTAAGAGCATT-GGGCCCCCTGACATTCT--GGCAGGTCCTGGTCTGTCTTCCCCACTAGACT-G-GGCTCTGGATGGACA--------GGCCAGCCCTGACTCTGCTCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845426 101 - 16357246 TCCCTAGGAGCATT-GGGTCCCCCGACATTCT--GGCAGGTCCTGGTCTGTCTTCACCACTAGACT-G-GGCTCTGGATAGACA--------GGCCAGCCCTGACTCTGCTCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326235 101 - 1807191 TCCCTAGGAGCGTT-GGGTCCCCCAACATTCT--GGCAGGTCCTGGTCTGTATTCGCCACTAGACT-G-GGCTCTGGATGGACA--------GGCCGGCCCTGACTCTGCTCTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5534 101 + 5963231 TCCCTAGGAGTGTT-GGGTCCCCCAACATTCT--GGCAGGTCCTGGTCTGTCTTCCCCACTACACT-G-GGCTCTGGATGAACA--------GGCCGGCCCTGACTCTGCTCTG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36260026 102 - 42659167 TTCCTGCAGGCAT--GGATCTTCAAAAACTCTGGGGCAGTTTCTAGTTTGTCATCCCTGA-AGACCAG-GGCGCCCCACGGACA--------GGGCAGCTGTGCTTCTGCTCTG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82790795 72 + 104043685 ------------TTAAGCTCATTTCA----CT--GGCCGTCCTT--------TTCCCCA-------GG-GACTCTTGAGCAACG--------GCTGCAGTGTACTCACACCTAG i mm10.chr15 C 0 I 3 s canFam3.chr10 46072870 111 - 69331447 TCCCTGTGCACA---GGCTCCTCCAGCATGCTGTGGCACATTTCAGCCTGTCTTCCCCAGCGGCCTGGCAGCTCTGAAGGGACAAGGGGTGGGGCTGGCCCAGCCTCTGCTCTC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5688595 369 + 108171978 I a score=16442.000000 s hg38.chr22_GL383582v2_alt 60798 2 + 162811 CA s panTro5.chr22 28841146 2 + 37823149 CA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115796 2 + 50109623 GA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137785 2 + 4464012 GA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635219 2 - 115148730 CA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84249669 2 + 92844088 CA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594609 2 - 96509753 CA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086649 2 - 13098629 CA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053179 2 - 4483953 CA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683990 2 + 33263144 CA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958174 2 - 14338769 CA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901407 2 + 1946073 CA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930480 2 - 2117846 CA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845527 2 - 16357246 CA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326336 2 - 1807191 TA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5635 2 + 5963231 CA i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82790870 2 + 104043685 CA i mm10.chr15 I 3 C 0 s canFam3.chr10 46072981 2 - 69331447 CT i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e otoGar3.GL873526 36260128 0 - 42659167 C e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5688595 369 + 108171978 I a score=1341106.000000 s hg38.chr22_GL383582v2_alt 60800 144 + 162811 CCCCACACCCAGGCTGGGA--CAGTCGATG-TGGTGGCATTGA-GGACTGGGTGGCCAGGGTTCCTAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTATCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGTGCCAGGCC s panTro5.chr22 28841148 144 + 37823149 CCCCACACCCAGGCTGGGA--CAGTCGATG-TGGTGGCATTGA-GGACTGGGTGGCCAGGGTTCCTAGACTGGACCCACCTGGCAGTGGCCATGCCGGGGCTATCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGTGCCAGGCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115798 144 + 50109623 CCCCTCACCCAAGCGGGGA--CAGTCAGTG-TGGTGGCATTGA-GGACTAGGTGGCCAGGGTTCCTAGAGTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTATCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGTGCCAGGCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137787 144 + 4464012 CCCCACACCCAGGCTGGGA--CAGTCGATG-TGGTGGCATTAA-GGACTGGGTGGCCAAGGTTCCCAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTATCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGTGCCAGGCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635221 144 - 115148730 CCCCACAGCCAGGCTGGGA--CAGTCGATG-TGGTGGCATTGA-GGACTGGGTGGCCAGGGTTCCTAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTACCACCAGgggctggtgctgagctggggtggggagggcGCCAGGCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84249671 144 + 92844088 CTCCACACCCAGGCTGGGA--CAGTTGATG-TGGTGGCATTGA-GGACTGGGTGGCAAGGGTTCCTAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTACCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGCTCCAGGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594611 144 - 96509753 CCCCACACCCAGGCTGGGA--CAGTTGATG-TGGTGGCATTGA-GGACTGGGTGGCAAGGGTTCCTAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTACCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGCTCCAGGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086651 144 - 13098629 CCCCACACCCAGGCTGGGA--CAGTTGATG-TGGTGGCATTGA-GGACTGGGTGGCAAGGGTTCCTAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTACCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGCTCCAGGCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053181 144 - 4483953 CCCCACACCCAGGCTGGGA--CAGTTGATG-TGGTGGCATTGA-GGGCTGGGTGGCAAGGGTTCCTAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTACCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGCTCCAGGCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24683992 144 + 33263144 CCCGACACCCAGGCTGGGA--CAGTTGATG-TGATGGCATTGA-GGACTGGGTGGCCAGGGTTCCCAGAGTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTACCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGCTCCAGGCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958176 144 - 14338769 CCCCACACCCAGGCTGGGA--CAGTTGATG-TGGTGGCATTGA-GGGCTGGGTGGCAAGGGTTCCTAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTACCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGCTCCAGGCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901409 145 + 1946073 CCCCACACCCAGGCTGGGA--CAGTTGATG-TGATGGCACTGAGGGACTGGGTGGCCAGGGTTCCCAGAGTGGGCCCACCTGGTAGTGGCCATGCTGGGGCTACCACCAGGGGCTGGTGTTGAGCTGGGGTGAGGAGGGCTCCAGGCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930482 137 - 2117846 CCCCCCACACAGGCT-GGA------CAGTG-TGGTGGCATTGA-AGACTGGCA-GCCAGGGTTCCCAGACTAGGCCCACCTGGCAGTGGCTACGCTGGGGCACCCACCAGGGGCTGATGCTGAGCT-GGGTGAGGAGGGCCCCAGGCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845529 142 - 16357246 CCCCATACACAGGTT-GGA--CAGTCAGTG-TGGTGGCATTGA-GGACTGGCAGGCCAGGGTTCCCAGACTGGGCCCACCTGGCAGTGGCCACACTGGGGCACCAACCAGGGGCTGGTGCTGAGCT-GGGTGAGGAGGGCCCCAGGCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326338 142 - 1807191 CCCCACACACAGGCT-GGA--CAGTTAGTG-TGGTGGCATTAA-GGACTGGCAGACCAGGGTTCCCAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCACCCACCAGGGGCTGGTGCTGAGCT-GGGTGAGGAGGACCCCAGGCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5637 141 + 5963231 CCCCACACACAGGCT-GGA--CAGTCAGTG-TGGTGGCATTGA-GGACTGGCAGGCCAGGGTTCCCAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCACCCACCAGGGGCTG-TGCTGAGCT-GGGTGACGAGGGCCCCAGGCC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36260128 86 - 42659167 CTCCACACCCAGGCTGGGG--CAATCAGTGCCTGTGGAATGGA-GGACTGGATGGCCTGGGTTCCCAGCCTGGCCCCAGCTGGCAAT--------------------------CT--------------------------------- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82790872 94 + 104043685 TCCTGTCCCCATGTGGAAATCCAGT--GTG-TGGTGGTCTTGG-AGTTTATCA----------CCCATGTTTGCCCC--------GTGAGGATTCTCGGACCA-----AGGTGCCCATGCC--------------------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46072983 68 - 69331447 -CCCCCCCCC-----------CAGCTGCTC-C------------CCACC--------------CCCAG--------CATCAGGCTGTGACCACGGCAGAG---------------------------------GGAGGCCTGCAGACC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5688595 369 + 108171978 I a score=3097808.000000 s hg38.chr22_GL383582v2_alt 60944 199 + 162811 TACCTTAGGGATGCGGAAGCCCTGTACTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGCAGGGCATGCGAGCCTGGTCACCCATCTCTGGTCACCACACCTGCCCTATCACGTTG-TCGAT---CTGTTGGACACGGCCTGGACAGACA s panTro5.chr22 28841292 199 + 37823149 TACTTTAGGGATGCGGAAGCCCTGTACTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGCAGGGCATGCGAGCCTGGTCATCCATCTCTGGTCACCGCACCTGCCCTATCACGTTG-TCGAT---CTGTTGGACACGGCCTGGACAGACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41115942 202 + 50109623 TACCTTAGGGATGCGGAAGCCCTGTACTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCTGGTCGCCGCACCTGCCCTATCACGTCG-TCGATCTCCTGTTGGACACGGCCTGGACAGACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3137931 202 + 4464012 TACCTTAGGGATGCGGAAGCCCTGTACTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGAATCATGTCCCCAAAGCGCTGCACCTCATGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCTGGTCGCCGCACCTGGCCTATCACGTCG-TCGATCTCCTGTTGGACACGGCCTGGACAGACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635365 202 - 115148730 TACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATATGAGGCACATTCAGGGGAACAATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCTGGTCGCCGCACCTGCCCTATCACGTCG-TCGATCTCCTGTTGGACACGGCCTGGAGAGACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84249815 202 + 92844088 TACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATGTGGGGCATATTCAGGGGAACAATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACGCATCTCTGGTCGCCGCACCTGCCCTATCACGTCG-TCGATCTCCTGTTGGACACGGCCTGGACAGACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594755 202 - 96509753 TACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATGTGGGGCATATTCAGGGGAACAATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACGCATCTCTGGTCGCCGCACCTGCCCTATCACGTTG-TCGATCTCCTGTTGGACACGGCCTGGACAGACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086795 202 - 13098629 TACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATGTGGGGCATATTCAGGGGAACAATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACGCATCTCTGGTCGCCGCACCTGCCCTATCACGTTG-TCGATCTCCTGTTGGACACAGCCTGGACAGACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053325 202 - 4483953 TACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATGTGGGGCATATTCAGGGGAACAATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACGCATCTCTGGTCGCCGCACCTGCCCTATCACGTCG-TCGATCTCCTGTTGGACACGGCCTGGACAGACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684136 202 + 33263144 TACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATGTGGGGCATATTCAGGGGAACAATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACGCATCTCTGGTCGCCGCACCTGCCCTATCACGTTG-TCGATCTCCTGTTGGACACGGCCTGGACAGACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958320 202 - 14338769 TACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATGTGGGGCATATTCAGGGGAACAATGTCCCCAAAGCGCTGCACCTCATGAATCACGGCAGTGGTGTAGGGCATGTGAGCCTGGTCACGCATCTCTGGTCGCCGCACCTGCCCTATCACGTCG-TCGATCTCCTGTTGGACACGGCCTGGACAGACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901554 202 + 1946073 TACCTTAGGGATGAGGAAGCCCTGTACTTCGATGTCACGGGATGTCATGTGGGGCATATTCAGGGGAACAATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCTGGTCGCCGCACCTGCCCTATCACGTCG-TCGATCTCCTGTTGGACACGGCCTGGACAGACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930619 202 - 2117846 TACCTTAGGGATGAGGAAGCCCTGTACTTCAATGTCTCGGGATGTCATGTGGGGCATATTCATGGGAACAATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGTCTGGTCACCCATCTCTGGTGGCCGCGCCTGCCCTATCACGTCG-TTGATCTCCTGTTGGACACGGCCTGGACAGACA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845671 202 - 16357246 TACCTTAGGGATAAGGAAGCCCTGCACTTCAATGTCGCGGGATGTCATGTGAGGCATATTCATGGGGATGATGTCCCCAAAGCGCTGCACCTCGTGAATCACAGCAGTGGTGTAGGGCATGCAAGTCTGGTCACCCATCTCTGGTGGCCGCACCTGCCCTATCACGTCG-TCGATCTCCTGTTGGACACGGCCTGGACAGACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326480 202 - 1807191 TACCTTAGGGATGAGGAAGCCCTGCACTTCAATGTCTCGGGATGTCATGTGGGGCATATTCATGGGGATGATGTCCCCAAAGCGCTGCACCTCGTGAATCACAGCAGTGGTGTAGGGCATGCGAACCTGGTCGCCCATCTCTGGTCGCCGCGCCTGCCCTATCACGTCG-TCAATCTCCTGTTGGACACGGCCTGGACAGACA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5778 202 + 5963231 TACCTTAGGGATGAGGAAGCCCCGCACTTCAATGTCTCGGGATGTCATGTG-GGCATATTCATTGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACAGCAGTGGTGTAGGGCATGCAAGTCTGGTCACCCATCTCTGGTAGCCGTGCCTGCCCTATCACGTCGATCGATCTCCTGTTGGACACGGCCTGGACAGACA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5688964 202 + 108171978 TACCTTGGGGATGAGGAAGCCCTTCACTTCGATGTCACGGGTTGTCATGTGGGGCACACCCAGGGGGACGATGTCCGCGAAGCGCTGCACCTCGTGAATCACAGCAGTCGTGTAGGGCATGTGGGCCTGGTCACCCATTTCTGGTCTCCGCACCTGCCCTATCACTTCG-TCAATCTCCTGTTGGACACGGCCTGGACAGACA i micMur3.chr7 I 369 C 0 s otoGar3.GL873526 36260214 202 - 42659167 TACCTTGGGGATCAGGAAGCCCTGCACTTCGATGTCTCGGGATGTCATGTGGGGCACGCCCAGGGGAGCGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCGGTGGTGAAGGGCATATGGGTCTGGTCACTCATTTCTGGTCGCCGCACCTGCCCTATCACTTCA-TCGATCTCCTGTTGTACTCGGCCTGGACAGACA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82790966 202 + 104043685 TACCTTGGGGATGAAGAAGTCTTGGAATTTAATGTCTCGGGATGTCATATGTGGTAAATTTGTTGGGACGATGTCTGCAAAGCGTTGCACCTCATGAATGACCGCGTTTGTGTAGGGCATGCGGGCCTGGTCTGCCATCTCTGGATGCCGCACGTGCCCTATGACCTCG-TCGATTTCCTGGTGGACACGGCCTGGATAGATA i mm10.chr15 C 0 I 75 s canFam3.chr10 46073051 202 - 69331447 TACCTTGGGGATGAGGAAGCCCTGCACTTCAGTGTCTCGGGACGTCATGTGGGGCACACCGAGTGGGACGATGTCCCCAAAACGCTGCACCTCATGGATCACGGCCACGGTGAAGGGCATACGGGTCTGGTCTCCCATCTCTGGTAGCTGCTCCCGCCCTATCACCTCA-TCTATCTCCTGCTGGACACGTCCTAGACACACA i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=43055.000000 s hg38.chr22_GL383582v2_alt 61143 6 + 162811 CGCGTC s panTro5.chr22 28841491 6 + 37823149 TGCGTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116144 6 + 50109623 TGCGTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138133 6 + 4464012 TGCGTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635567 6 - 115148730 TGCGTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250017 6 + 92844088 TGCGTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594957 6 - 96509753 TGCGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7086997 6 - 13098629 TGCGAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053527 6 - 4483953 TGCGAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684338 6 + 33263144 TGCGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958522 6 - 14338769 TGCGAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901756 6 + 1946073 TGCATC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930821 6 - 2117846 TGCGAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845873 6 - 16357246 TGTGTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326682 6 - 1807191 TGTGTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5980 6 + 5963231 TGCGTC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5689166 6 + 108171978 AGTGTC i micMur3.chr7 C 0 C 0 s otoGar3.GL873526 36260416 6 - 42659167 AGCATC i otoGar3.GL873526 C 0 M 350 s canFam3.chr10 46073253 6 - 69331447 AGCATC i canFam3.chr10 C 0 C 0 e mm10.chr15 82791168 75 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=96458.000000 s hg38.chr22_GL383582v2_alt 61149 7 + 162811 CCCACAA s panTro5.chr22 28841497 7 + 37823149 CCCACAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116150 7 + 50109623 CCCACAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138139 7 + 4464012 CCCACAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635573 7 - 115148730 CCCACAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250023 7 + 92844088 CCCACAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594963 7 - 96509753 CCCACAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087003 7 - 13098629 CCCACAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053533 7 - 4483953 CCCACAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684344 7 + 33263144 CCCACAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958528 7 - 14338769 CCCACAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901762 7 + 1946073 CCCACAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930827 7 - 2117846 CTCACAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845879 7 - 16357246 CCCACAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326688 7 - 1807191 CCCACAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5986 7 + 5963231 CCCACAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5689172 6 + 108171978 -CCACAA i micMur3.chr7 C 0 I 9266 s canFam3.chr10 46073259 7 - 69331447 CCCACAG i canFam3.chr10 C 0 C 0 e mm10.chr15 82791168 75 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e otoGar3.GL873526 36260422 350 - 42659167 M e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=229466.000000 s hg38.chr22_GL383582v2_alt 61156 23 + 162811 TGGGTCAGCACCCAGGG-GACCAG s panTro5.chr22 28841504 23 + 37823149 TGGGTCAGCACCCAGGG-GACCAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116157 24 + 50109623 TGGGTCAGCACCCAGGGTGTCCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138146 23 + 4464012 TGGGTCAGCACCCAGAG-GACCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635580 23 - 115148730 TGGGTCAGCACCCAGGG-GACCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250030 23 + 92844088 TGGGTCAGCACTCAGGG-GACCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594970 23 - 96509753 TGGGTCAGCACTCAGGG-GACCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087010 23 - 13098629 TGGGTCAGCACTCAGGG-AACCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053540 23 - 4483953 TGGGTCAGCACTCAGGG-GACCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684351 23 + 33263144 TGGGTCAGCACTCAGGG-GACCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958535 23 - 14338769 TGGGTCAGCACTCAGGG-GACCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901769 22 + 1946073 TGGGTCAGCACCTAGGG-GG-TGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930834 23 - 2117846 GGGGTCAGCACCCACGG-GACTGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845886 23 - 16357246 TGGGTCAGCACCCAGGA-GACTGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326695 23 - 1807191 TGGGTCAGCACCCAGGG-GACTGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 5993 23 + 5963231 TAGGTCAGCACCCAGGG-GACTGG i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46073266 22 - 69331447 -TGGTCAGAACCCAGGG-GTCTGG i canFam3.chr10 C 0 I 1 e mm10.chr15 82791168 75 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e otoGar3.GL873526 36260422 350 - 42659167 M e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5689178 9266 + 108171978 I a score=337073.000000 s hg38.chr22_GL383582v2_alt 61179 36 + 162811 CCCTGACA---CTC----TCCTGCCTCCTGTGTTGGAGG------------------AGGT s panTro5.chr22 28841527 36 + 37823149 CCCTGACA---CTC----TCCTGCCTCCTGTGTTGGAGG------------------AGGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116181 38 + 50109623 CCCTGACA---CTC--CTTCCTGCCTCCTGTGTTGGAGG------------------AGGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138169 36 + 4464012 CCCTGACA---CTC----TCCTGCCTCCTGTGTTGGAGG------------------AGGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635603 36 - 115148730 CCCTGACG---CTC----TCCTGCCTCCTGTGTTGGAGG------------------AGGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250053 36 + 92844088 CCCTGACC---CTC----TCCTGCCTCCTGTGTTGGAGG------------------AGGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87594993 36 - 96509753 CCCTGACC---CTC----TCCTGCCTCCTGTGTTGGAGG------------------AGGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087033 36 - 13098629 CCCTGACC---CTC----TCCTGCCTCCTGTGTTGGAGG------------------AGGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053563 36 - 4483953 CCCTGACC---CTC----TCCTGCCTCCTGTGTTGGAGG------------------AGGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684374 36 + 33263144 CCCTGACC---CTC----TCCTGCCTCCTGTGTTGGAGG------------------AGGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958558 36 - 14338769 CCCTGACC---CGC----TCCTGCCTCCTGTGTTGGAGG------------------AGGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901791 33 + 1946073 CCCTGACA---CT-------CTGCCTCCTGTGTTGGAGG------------------AGGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930857 40 - 2117846 CCCTGATG---CCCTCCTTCCTGCCTCCTGTATTAGAGG------------------AGGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845909 43 - 16357246 CCCTGACGTCTTCTTCCTTCCTGCCTCCTGTATTAGAGG------------------AGGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326718 40 - 1807191 CCCTGACG---CCCTCCTTCCTGCCTCCTGTATTAGAGG------------------AGGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6016 40 + 5963231 CCATGATG---CCCTCCTTCCTGCCCCCTGTATTAGAGG------------------AGGT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5698444 54 + 108171978 CCCTGACC---CTC----TCCTGAGTCCTGTGCGGGGGGCTGGGCCACCTGAGGAGAAGGT i micMur3.chr7 I 9266 C 0 s canFam3.chr10 46073289 29 - 69331447 CTCCGACG---TCT--------GACGCCTGT---GGAGG------------------CAGC i canFam3.chr10 I 1 C 0 e mm10.chr15 82791168 75 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e otoGar3.GL873526 36260422 350 - 42659167 M e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=367485.000000 s hg38.chr22_GL383582v2_alt 61215 35 + 162811 TAGGCTTACA--GGAACC-T-GGCCAAGCCTGTGCTTGG s panTro5.chr22 28841563 35 + 37823149 TAGGCTTACA--GGAACC-T-GGCCAAGCCTGTGCTTGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116219 35 + 50109623 CAGGCTTACA--GGATCC-T-GGTCAAGCCTGTGCTTGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138205 35 + 4464012 TAGGCTTACA--GGAGCC-T-GGCCAAGCCTGTGCTTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635639 35 - 115148730 TAGGCTTACA--GGAGCC-T-GGCTAAGCCTATGCTTGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250089 35 + 92844088 CAGGCTTACA--GGAGAC-T-GGTCAAGCCTGTGCTGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595029 35 - 96509753 CAGGCTTACA--GGAGAC-T-GGTCAAGCCTGTGCTGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087069 35 - 13098629 CAGGCTTACA--GGAGAC-T-GGTCAAGCCTGTGCTGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053599 35 - 4483953 CAGGCTTACA--GGAGAC-T-GGTCAAGCCTGTGCTGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684410 35 + 33263144 CAGGCTTACA--GGAGAC-T-GGTCAAGCCTGTGCTGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958594 35 - 14338769 CAGGCTTACA--GGAGAC-T-GGTCAAGCCTGTGCTGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901824 35 + 1946073 CTGGCTTACA--GGAGCC-T-GGTCAACACTGTGCTGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930897 35 - 2117846 CAGGCTTACA--GGAGCC-T-GGCCAAGCCTGTGCTTGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845952 35 - 16357246 CAGGCTTATA--GGAGCC-T-GGCCAAGCCTGTGCCTGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326758 35 - 1807191 CAGGCTTACA--GGAGCC-T-GGCCAAGCCTGTGCTTGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6056 35 + 5963231 CAGGTTTACA--GGAGCC-T-GGCCAAGCCTGTGCTTGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5698498 34 + 108171978 CACTCTTACA---GAGCG-T-GGCTCAGGCTGTGCTTGG i micMur3.chr7 C 0 T 9244 s mm10.chr15 82791243 34 + 104043685 CAGAC-TGTG--GGAGCC-TAGGTCAAGCTAATGCGGG- i mm10.chr15 I 75 C 0 s canFam3.chr10 46073318 35 - 69331447 ---TCTTACCTCTGAGCCAT-GTCCCAGCCTCTACTCGG i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e otoGar3.GL873526 36260422 350 - 42659167 M e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=13923.000000 s hg38.chr22_GL383582v2_alt 61250 1 + 162811 A s panTro5.chr22 28841598 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116254 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138240 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635674 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250124 1 + 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595064 1 - 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087104 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053634 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684445 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958629 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901859 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930932 1 - 2117846 A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845987 1 - 16357246 A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326793 1 - 1807191 A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6091 1 + 5963231 A i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82791277 1 + 104043685 A i mm10.chr15 C 0 C 0 s canFam3.chr10 46073353 1 - 69331447 A i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e otoGar3.GL873526 36260422 350 - 42659167 M e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T e micMur3.chr7 5698532 9244 + 108171978 T a score=641049.000000 s hg38.chr22_GL383582v2_alt 61251 69 + 162811 GTCCCGGGTGTCCCAGCTAAGCTCAGGGGCCCCC-----ACCTGTACCCTTCCTCCCTTGC--CCCCTG-CACTGGG s panTro5.chr22 28841599 69 + 37823149 GTCCCGGGTGTCCCAGCTAAGCTCAGGGGCCCCC-----ACCTGTACCCTTCCTCCCTTGC--CCCCTG-CACTGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116255 69 + 50109623 GCCCCGGGTGTCCCAGCAAAGTTCATGGGCCCCT-----GCCTGTACCCTTCCTCCCTCAG--CCCCTG-CACTGTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138241 67 + 4464012 GCCCCGGGTGTCCCAGCTAAGCTCGGGG--CCCC-----ACCTGTACCCTTCCTCCCTTGC--CCCCTG-CACTGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635675 69 - 115148730 GCCCCGGGTGTCCCAGCTAAGCTCAGGGGCTGCC-----TCCTGTACCCTTCCTCCCTCAG--CCCCTG-CACTGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250125 69 + 92844088 GCCCCGGGTGTCCCAGCTAAGCTCAGGGGCTCCC-----GCCTGTACCCTTCCTCCCTCGC--CCCCTG-CACTCGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595065 69 - 96509753 GCCCTGGGTGTCCTAGCTAAGCTCAGGGGCTCCC-----GCCTGTACCCTTCCTCCCTTGC--CCCCTG-CACTTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087105 69 - 13098629 GCCCTGGGTGTCCTAGCTAAGCTCAGGGGCTCCC-----GCCTGTACCCTTCCTCCCTTGC--CCCCTG-CACTTGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053635 69 - 4483953 GCCCTGGGTGTCCTAGCTAAGCTCAGGGGCTCCC-----GCCTGTACCCTTCCTCCCTTGC--CCCCTG-CACTTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684446 69 + 33263144 GCCTTGGGTGTCCCAGCTAAGCTCAGGGGCTCCC-----GCCTGTACCCTTTCTCCCTTGC--CCCCTG-CACTTGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958630 69 - 14338769 GCCCTGGGTGTCCTAGCTAAGCTCAGGGGCTCCC-----GCCTGTACCCTTCCTCCCTTGC--CCCCTG-CACTTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901860 66 + 1946073 GCCCCGGGTGTCCCAGCTAAGTTCACGGGCCACC-----ACCTGTACCCT---TCCCTCGC--CCCCGG-CACTGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1930933 70 - 2117846 GCCCCAGGTGTCCCAGCTAAGCTCAGAG-TACCC-----GTCTGTACCCTTCCTCCCTCACCTCCCCCG-CACTGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8845988 68 - 16357246 GCCCCTGGTGTCCCAGCTAAGCTCAGGG-TACCC-----ACCCGTACCCTTCCTCCCTCGC--TCCCTG-CACTGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326794 68 - 1807191 GCCCTTGGTGTCCCAGCTAAGCTCAGGG-TACTC-----GCCTGTACCCTTCCTCCCTCGC--TCCCTG-CACTGGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6092 67 + 5963231 GCCCCAGGTGTCCCAGCTAAGCTCAGGG-TAC-C-----GCCTGTACCCTTCCTCCCTCGC--TCCCTG-CACTGGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5689288 69 + 108171978 GCCTGGGGTGTCAGAATGAAGCTCAGGGGCCCCT-----GCCTGTACCTCTCCTCCCTCGG--CCGCCC-CACCAGA i micMur3.chr7 T 9244 C 0 s mm10.chr15 82791278 39 + 104043685 GCCACTAGTTTCTCAAATG----------------------------CCTCTTGCCCTCCC--TCCCAG-------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46073354 72 - 69331447 GCTTCTGGGGGACAAACCAGGCTCAAGGGACCCCAGGCTGTCCATCCTCTCCCTCCCCCAT--CCCATCCCACC--- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e otoGar3.GL873526 36260422 350 - 42659167 M e proCoq1.NW_012136747v1 5042274 2016 - 6317780 T a score=1406609.000000 s hg38.chr22_GL383582v2_alt 61320 91 + 162811 CCCCAGCTGGGCTCACGCTGCACATCCGGGCGTAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGATCGAGGTGGTCACCATCCCGGCAA s panTro5.chr22 28841668 91 + 37823149 CCCCAACTGGGCTCACGCTGCACATCCGGGTGTAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGACCGAGGTGGTCACCATCCCGGCAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116324 91 + 50109623 TCCCAGATGGGCTCACGCTGCACATCCGGATGTAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGGTCGAGGTGGTCACCATCCCGGCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138308 91 + 4464012 CCCCAGCTGGGCTCACGCTGCACATCCGGGTGTAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGATGGAGGTGGTCACCATCCCGGCAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635744 91 - 115148730 CCCCAGCTGGGCTCACGCTGCACATCCGGGTGTAGGATCATCAGCAGGAGGCCCCAGGCCAGCGTGGTTGAGGTGGTCACCATCCCAGCCG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250194 91 + 92844088 CCCCAGCTGGACTCACGCTGCACATCCGGGCGCAGGACCATGAGCAGGAGGCCCCAGGCCAGCGTGGTCGAGGTGGTCACCATCCCAGCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595134 91 - 96509753 CCCCAGCTGGACTCACGCTGCACATCCGGGTGCAGGACCATGAGCAGGAGGCCCCAGGCCAGTGTGGTCGAGGTGGTCACCATCCCAGCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087174 91 - 13098629 CCCCAGCTGGACTCACGCTGCACATCCGGGTGCAGGATCATGAGCAGGAGGCCCCAGGCCAGTGTGGTCGAGGTGGTCACCATCCCAGCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053704 91 - 4483953 CCCCAGCTGGACTCACGCTGCACATCCAGGTGCAGGATCATGAGCAGGAGGCCCCAGGCCAGTGTGGTCGAGGTGGTCACCATCCCAGCAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684515 91 + 33263144 CCCCAGCTGGACTCACGCTGCACATCCGGGTGCAGGACCATGAGCAGGAGGCCCCAGGCCAGCGTGGTTGAGGTGGTCACCATCCCAGCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958699 91 - 14338769 CCCCAGCTGGACTCACGCTGCACATCCGGGTGCAGGATCATGAGCAGGAGGCCCCAAGCCAGTGTGGTCGAGGTGGTCACCATCCCAGCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 901926 91 + 1946073 TCCCAGCTGGGCTCACGCTGCACATCCGGGTGCAGGATCATGAGTAGGAGGCCCCAGGCCAGCGTGGTCGAGGTGGTCACCATCCCAGCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931003 91 - 2117846 TCCCAGGTGGGCTCACGCTGCACATCTGGGTGAAGGATCATCAGCAGGAGGCCCCAGGCCAGCGTGATCGAGGTGGACACCATCCCAGCCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8846056 91 - 16357246 TCCCAGCTGGGCTCACGCTGCACATCTGGGTGAAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGATTGAGGTGGTCACCATCCCAGCCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326862 91 - 1807191 TCCCAGCTGGGCTCACGCTGCACATCTGGGTGAAGGATCATGAGCAGAAGGCCCCAGGCCAGCGTGATTGAGGTGGTCACCATCCCGGCCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6159 91 + 5963231 TCCCAGCTGGGCTCACACTGCACATGTGGGTGAAGGATCATGAGCAGGAGGCCCCAGGCCAGCGTGATTGAGGTGGTCACCATCCCAGCAG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5689357 91 + 108171978 CCGCAGCCGGGCTCACGCTGCACATCCGGGTGTAGGATCATGAGCAGCAGGGCCCAGGCCAGTGTGGTCGAGGAGGTCTCCATCCCAGCGG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5040258 91 - 6317780 CCCCAGCCGGGCTCACGCTGCACATCCGGGTGCAGGATCATGAGCAGGAGGGCCCAGTCCAGCGTGGTGGAGGTGGTCACCATCCCAGCGG i proCoq1.NW_012136747v1 T 2016 I 13254 s mm10.chr15 82791317 90 + 104043685 -CCCCACCAGGCTCACGCTGCACATCTGGATGCAGGATCATGAGCAGCAGGGCCCAGGACAGTGTGGTTGAGGTGGTCACCATCCCTGCCA i mm10.chr15 C 0 C 0 s canFam3.chr10 46073426 91 - 69331447 CCCAGGCTGGGCTCACGCTGCACGTCCGGGTGCAGGATCATGAGCAGGAGGGCCCAGGTCAGCGTGATTGAGGTGGACACCATCCCAGCGA i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e otoGar3.GL873526 36260422 350 - 42659167 M a score=845301.000000 s hg38.chr22_GL383582v2_alt 61411 53 + 162811 AGAACAGGTCAGCCACCACCATGCGCAGGTTCTCATCATTGAAGCTGCTCTCA s panTro5.chr22 28841759 53 + 37823149 GGAACAGGTCAGCCACCACCATGCACAGGTTCTCATCATTGAAGCTGCTCTCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116415 53 + 50109623 AGAACAGGTCAGCCACCACCATGCGCAGGTTCTCATCATTGAAGCTGCTCTCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138399 53 + 4464012 AGAACAGGTCAGCCACCACCATGCGCAGGTTCTCATCATTGAAGCTGCTCTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635835 53 - 115148730 AGAACAGGTCAGCCACCACTATGCGCAGGTTCTCATCATTGAAGCTGCTCTCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250285 53 + 92844088 AGAACAGGTCAGCCACCACCATGCGCAGGTTCTCTTCATTGAAGCTGCTCTCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595225 53 - 96509753 AGAACAGGTCAGCCACCACCATGCGCAGGTTCTCTTCATTGAAGCTGCTCTCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087265 53 - 13098629 AGAACAGGTCAGCCACCACCATGCGCAGGTTCTCTTCATTGAAGCTGCTCTCG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053795 53 - 4483953 AGAACAGGTCAGCCACCACCATGCGCAGGTTCTCTTCATTGAAGCTGCTCTCG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684606 53 + 33263144 AGAACAGGTCAGCCACCACCATGCGCAGGTTCTCTTCATTGAAGCTGCTCTCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958790 53 - 14338769 AGAACAGGTCAGCCACCACCATGCGCAGGTTCTCTTCATTGAAGCTGCTCTCG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 902017 53 + 1946073 AGAACAGGTCAGCCACCACCATGCGCAGGTTCTCTTCATTGAAGCTGCTCTCG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931094 53 - 2117846 AGAACAGGTCAGCCACCACCATACGCAGGTTCTCATCATTGAAGCTGCTCTTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8846147 53 - 16357246 AGAACAGGTCAGCCACCACCATACGCAGGTTCACATCATTGAAGCTGCTCTCG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1326953 53 - 1807191 AGAACAGGTCAGCCACCACCATACGCAGGTTCGTGTCATTGAAGCTGCTCTCG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6250 53 + 5963231 TGAACAGGTCAGCCACCACCATACGCAGGTTCTCATCATTGAAGCTGCTCTTG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5689448 53 + 108171978 AGAACAGGTCAGCCACCACCAGGCGCAGGTTATCATCGTTGAAGCTGCTCTCG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5053603 53 - 6317780 AGAACAGGTCAGCCACCACCAGGCGCAGGTTCTCATCATTGAAGCTGCTCTCG i proCoq1.NW_012136747v1 I 13254 C 0 s mm10.chr15 82791407 53 + 104043685 TGAACAGGTCAATCACCACTATGCGCAGGTTCTTATCATTGAAGCTGCTCTCA i mm10.chr15 C 0 C 0 s canFam3.chr10 46073517 53 - 69331447 CGAACAGGTCAGAGGTCACCATGCACAGGTTCTCCTCATTGAAGCTGGTCTTG i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e otoGar3.GL873526 36260422 350 - 42659167 M a score=333882.000000 s hg38.chr22_GL383582v2_alt 61464 18 + 162811 GGGTTCCCCTTGGCCTGA s panTro5.chr22 28841812 18 + 37823149 GGGTTCCCCTTGGCCTGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116468 18 + 50109623 GGGTTCCCCTTGGCCTGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138452 18 + 4464012 GGGTTCCCCTTGGCCTGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635888 18 - 115148730 GGGTTCCCCTTGGCCTGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250338 18 + 92844088 GGGTTCCCCTTGGCCTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595278 18 - 96509753 GGGTTCCCCTTGGCCTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087318 18 - 13098629 GGGTTCCCCTTGGCCTGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053848 18 - 4483953 GGGTTCCTCTTGGCCTGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684659 18 + 33263144 GGGTTCCCCTTGGCCTGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958843 18 - 14338769 GGGTTCCTCTTGGCCTGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 902070 18 + 1946073 GGGTTCTTCTTGGCCTGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931147 18 - 2117846 GGGTTCTCCTTGGCCTGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8846200 18 - 16357246 GGGTTCTCCTTGGCCTGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327006 18 - 1807191 GGGTTCTCCTTGGCCTGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6303 18 + 5963231 GGGTTCTCCTTGGCCTGA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5689501 18 + 108171978 GGGTTCCCCTTGGCCTGA i micMur3.chr7 C 0 I 175 s proCoq1.NW_012136747v1 5053656 18 - 6317780 GGGTTTCCCTTGGCCTGA i proCoq1.NW_012136747v1 C 0 T 13079 s otoGar3.GL873526 36260779 18 - 42659167 GGGTTCCCCTTGGCCTGA i otoGar3.GL873526 M 350 C 0 s mm10.chr15 82791460 18 + 104043685 GGATTCCCCTTGGCCTGG i mm10.chr15 C 0 C 0 s canFam3.chr10 46073570 18 - 69331447 GGGTTCCCTTTGGCCTAG i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I a score=51387.000000 s hg38.chr22_GL383582v2_alt 61482 4 + 162811 GCAG s panTro5.chr22 28841830 4 + 37823149 GCAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116486 4 + 50109623 GCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138470 4 + 4464012 GCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635906 4 - 115148730 GCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250356 4 + 92844088 GCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595296 4 - 96509753 GCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087336 4 - 13098629 GCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053866 4 - 4483953 GCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684677 4 + 33263144 GCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958861 4 - 14338769 GCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 902088 4 + 1946073 GCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931165 4 - 2117846 GCAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8846218 4 - 16357246 GCAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327024 4 - 1807191 GCAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6321 4 + 5963231 GCAG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36260797 4 - 42659167 CCAG i otoGar3.GL873526 C 0 I 13909 s mm10.chr15 82791478 4 + 104043685 GCCA i mm10.chr15 C 0 C 0 s canFam3.chr10 46073588 4 - 69331447 GCCA i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5053674 13079 - 6317780 T e micMur3.chr7 5689519 175 + 108171978 I a score=1673945.000000 s hg38.chr22_GL383582v2_alt 61486 173 + 162811 GGCTGAGAGGGTA--CTCAGGGGACAGAACGGGAAAG---CCCCCAAATGACCTCCACATTCTGCACCTGTCAGCCCAGGTGCC-ACTTGCCAAGTGATCCAATGGACCCACCTTTTGCCTG------CCTCATTCCTCCCGGACG-CTCAACCCACCACCCCTGGTCCCTACCGTGTCAGCCACT s panTro5.chr22 28841834 172 + 37823149 GGCTGAGAGGGTA--CTCAGGGGACAGAGCGGGAAAG---CCCCCAAATGACCTCC-CATTCTGCACCTGTCAGCCCAGGTGCC-ACTTGCCAAGTGATCCAATGGACCCACCTTTTGCCTG------CCTCATTCCTCCCGGACG-CTCAACCCACCACCCCTGGTCCCCACCGTGTCAGCCGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116490 172 + 50109623 GGCTGAGAGGGTA--CTCAGGGGACAGAGCGGGAAAG---CCCCCAAATGACCTCC-CATTCTGCACCTGTCAGCCCAGGTGCC-ACTTGCCAAGTGATCCAATGGACCCACCTTTTGCCTG------CCTCATTCCTCCCGGACG-CTCAACCCACCACCCCTGGTCCCCACCGTGTCAGCCGCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138474 176 + 4464012 GGCTGAGAGGGTA--CTCAGGGGACAGAGCGGGAAAG----CCCCAAATGACCTCC-CATTCTGCACCTGTCAGCCCAGGTGCC-ACTTGCCAAGTGATCCAATGGACCCACCTTTTGCCTGGCCACTCCTCATTCCTCCCGGATG-CTCAACCCACCACCCGTGGTCCCCA-CGTGTCAGCCACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106635910 178 - 115148730 GGCCGAGAGGGTA--CTCGGGGGACAGAGCGGGGTAG---CTCCCAAATGACCTCC-CATTCTGCACCTGTCAGCCCAGGTGCC-ACTCACCAAGTGATCCAATGGACCCACCTTTTGCCTGGCCACTCCTCATTCCTCCTGGACG-CTCAACCCACCACCCCTGGTCCCCACCGTGTCAGCCGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250360 177 + 92844088 GGCCGAGAGGGTA--CTT-GGGGACACAGCGGGAAAG---CCCCCAAATGTCCTCC-CATTCTGCACCTGTCAGCCCAGGTGCC-ACTCACCAGGTAATCCAGCGGCCCCACCTTTTGCCTGGCCACTCCTCATTCCTCCCAGGAG-CTCAACCCACCACCCTTGGTCCTCACCATGGCAGCCGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595300 177 - 96509753 GGCCGAGAGGGTA--CTT-GGGGACACAGCGGGAAAG---CCCCCAAATGTCCTCC-CATTCTGCACCTGTCAGCCCAGGTGCC-ACTCACCAGGTAATCCAGCGGCCCCACCTTTTGCCTGGCCACTCCTCATTCCTCCCAGGAG-CTCAACCCACCACCCTTGGTCCTCACCATGGCAGCCGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087340 177 - 13098629 GGCCGAGAGGGTA--CTC-GGGGACACAGCGGGAAAG---CCCCCAAATGTCCTCC-CATTCTGCACCTGTCAGCCCAGGTACC-ACTCACCAGGTAATCCAGCGGCCCCACCTTTTGCCTGGCCACTCCTCATTCCTCCCAGGAG-CTCAACCCACCACCCTTGGTCCTCACCATGGCAGCCGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4053870 177 - 4483953 GGCCGAGAGGGTA--CTC-GGGGACAGAGCGGGAAAG---CCCCCAAACGTCCTCC-CATTCTGCACCTGTCAGCCCAGGTGCC-ACTCACCAGGTAATCCAGCGGCCCCACCTTTTGCCTGGCCACTCCTCATTCCTCCCAGGAG-CTCAACCCACCACCCTTGGTCCCCACCATGGCAGCCGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684681 177 + 33263144 GGCCGAGAGGGTA--CTC-GGGGACAGAGTGGGAAAG---CCCCCAAATGTCCTCC-CATTCTGCACCTGTCAGCCCAGGTGCC-ACTCACCAGGTAATCCAGTGGCCCCACCTTTTGCCTGGCCACTCCTCATTCCTCCCAGGAG-CTCAACCCACCACCCTTGGTCCCCACCGTGGCAGCCGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13958865 177 - 14338769 GGCCGAGAGGGTA--CTC-GGGGACAGAGCGGGAAAG---CCCCCAAACGTCCTCC-CATTCTGCACCTGTCAGCCCAGGTGCC-ACTCACCAGGTAATCCAGCGGCCCCACCTTTTGCCTGGCCACTCCTCATTCCTCCCAGGAG-CTCAACCCACCACCCTTGGTCCCCACCATGGCAGCCGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 902092 177 + 1946073 GGCCGAGAGGGTG--CTC-GGGGACAGAGCGGGAAAG---CCCCCAAATGTCCTCC-CATTCTGCACCTGTCAGCCCAGGTGCC-ACTCACCAGGTAATCCAGCAGCCCCACCTTTTGCCTGGCCACTCCTCATTTCTCCCAGGAG-CTCAACCCACCACCCTTGGTCCCCACCATGGCAGCCGCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931169 179 - 2117846 GACCGAGAGGGTT--CTCAGGGGACCGAGGGGGAAAG---TCCCCAAATGACCTCC-TATTCTGCACCTGTCAGCCCAGGTGCT-GCTCACCGGGTGATGCACCAGCCCCAGCTTTTGCCTGGACACTCCTCATTCCTCCTGGGATCCTCAACCCACCACCCCTGCTCCCCACCCTGGCAGCCACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8846222 178 - 16357246 GGCCAAGA-GGTA--CTCAGGGGACGGAGAGGGAAAG---TCCCCAAATGACCTCC-TATTTTTCGCCTGTCAGCCCAGGTGCT-GCTCACTGGGTGATGCACTAGCCCCAGCTTTTGCCTGGCTACTCCTCATTCCTCCTGGGACCCTCAACCCACCGCCCCTGCTCCTCACCCTGGCAGCTGCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327028 179 - 1807191 GGCCGAGAGGGTA--CTCAGGGGACAGAAAGGGAAAG---TCCCCAAATGACCTCC-TATTTTGCACCTGTCAGCCCAGGTGCT-GCTCACCAGGTGATGCACCAGCCCCAGCTTTTGCCTGGCCACTCCTCATTCCTCCTGGGACCCTCAACCCACCGCCCCTGCTCCCCACCCTGGCAGCCGCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6325 177 + 5963231 GGCCGAGAGGGTA--CTCA-GGGACAGAGGGGGAAAG---TCCCCAAATGACCTCC-TATTCTGCACCTGTCAGGCCAGGTG-T-GCTCACCAGGTGATGCACCAGCCCCAGCTTTTGCCTGGCCACTCCTCATTCCTCTTGGGACCCTCAACCCACCATCCCTGCTCCCCACCCTCACAGCTGCT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36274710 166 - 42659167 GGCAAAGAGGGTG------GGGGATAGAAGAGGAAG-----CCCCAAATGACCCTC-CATTTTGCACCTGTCA-CCCATGGGCC-AGCTCAGGGATGGTGAACCAGCCCCACC--CTGCCTAGCCTGGACCCATTTGTCAGGGGACCCTCAGGCCATGAC----AGTCTGATCCATGACAGTGCCC i otoGar3.GL873526 I 13909 C 0 s mm10.chr15 82791482 169 + 104043685 GACAGAAAGGGT-------GGGTTCAGCAGGGAGGAGTCATCCCACAGTGGCCTCC-CATTGTTC-CCCGGAAACCCAGGGGCTGAGTCACTTGGTGATGCACAGGACTCTAC--CCATCTGG-----CATCACAGCTCACAGGAC-CTCAGTGCACAGCCCCTGGCCAGACTTCTTGGAGCTGCC i mm10.chr15 C 0 I 1 s canFam3.chr10 46073592 139 - 69331447 -TGTGAGAGGGTGAGCTC-TGGGGCAGAGGGAGAGAG---CCCCCGGATGGCCTCC-CACCCTGC--------------------ACCCACTGGGTGATACA-CGGCCCCACCTT---CGTGGGC---CTTGGTTCTT--GGGGCC-CTCATCCCGCAACCATTGTCCCGGACTC----------- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5053674 13079 - 6317780 T e micMur3.chr7 5689519 175 + 108171978 I a score=1907065.000000 s hg38.chr22_GL383582v2_alt 61659 116 + 162811 CTCACCTTCTCCTTCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTAGGCTGGGTCCCAGATCATTCTGTGCTCGGTCAGCAGCTCATCCAGCTGGGTCAGGAAAGCCTT s panTro5.chr22 28842006 116 + 37823149 CTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCCGGGTGGCTGGGCTGGGTCCCAGATCATTCTGTGCTCGGTCAGCAGCTCATCCAGCTGGGTCAGGAAAGCCTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116662 116 + 50109623 CTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCCGGGTGGCTGGGCTGGGTCCCAGATCATTCTGTGCTCGGTCAGCAGCTCATCCAGCTGGGTCAGGAAAGCCTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138650 107 + 4464012 CTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTC---------GGGCTGGGTCCCAGGTCATTCTGTGCTCGGTCAGCAGCTCATCCAGCTGGGTCAGGAAAGCCTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636088 116 - 115148730 CTCACCTTCTCCATCTCTGCCAGGAAGGCATCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATTCTGTGCTCGGTCAGCAGCTCATCCAGCTGGGTCAGGAAAGCCTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250537 116 + 92844088 CTCACCTTCTCCATCTCTGCCAGGAAGGCGTCAGTCAGGTCTCGGGGTGGCTGAGCTGGGTCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCCAGCTGGGTCAGGAAAGCCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595477 116 - 96509753 CTCACCTTCTCCATCTCTGCCAGGAAGGCGTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCCAGCTGGGTCAGGAAAGCCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087517 116 - 13098629 CTCACCTTCTCCATCTCTGCCAGGAAGGCGTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCCAGCTGGGTCAGGAAAGCCCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054047 116 - 4483953 CTCACCTTCTCCATCTCTGCCAGGAAGGCGTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCTAGCTGGGTCAGGAAAGCCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684858 116 + 33263144 CTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGATCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCCAGCTGGGTCAGGAAAGCCTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13959042 116 - 14338769 CTCACCTTCTCCATCTCTGCCAGGAAGGCGTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCTAGCTGGGTCAGGAAAGCCTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 902269 116 + 1946073 CTCACCTTCTCCATTTCTGCCAGGAAGGCATCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCAGTCAGCAGCTCATCTAGCTGGGTCAGGAAAGCCTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931348 116 - 2117846 CCCACCTTCTCCATCTCTGCCAGGAAGGCATCAGTCAGGTTTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGTTCAGCAGTTCATCCAACTGGGCCAGGAAAGCCTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8846400 116 - 16357246 CCCACCTTCTCCATCTCTGCCAGGAAGGCATCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGCTCAGCAGCTCATCCAGCTGGGCCAGGAAAGCCTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327207 116 - 1807191 CCCACCTTCTCCATCTCTGCCAGGAAGGCATCAGTCATGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGTTCAGCAGCTCATCCAGGTGGGCCAGGAAAGCCTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6502 116 + 5963231 CCCACCTTCTCCATCTCTGCCAGGAAGGCATCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGTTCAGCAGCTTATCCAGCTGGGCCAGGAAAGCCTT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5689694 116 + 108171978 CTCACCTTCTCCACCTCGGCCAGGAAGGCGTCAGTCAGGTCTCGGGGTGGCTGGGCCGGGTCCCGTGTCATCCTGTGCTCGGTCACCAACTCATCCAGCAGGGCCATGAAAGCCTT i micMur3.chr7 I 175 C 0 s proCoq1.NW_012136747v1 5040595 116 - 6317780 CTCACCTTCTCCACCTCGGCCAGGAAGGCATCAGTCAGGTCTCGGGGTGGCTGGGCCGGGTCCCGGGTCATCCTGTGCTCGGTCACCAGCTCATCCAGCAGGGCCATGAAAGCCTT i proCoq1.NW_012136747v1 T 13079 I 538 s otoGar3.GL873526 36274876 116 - 42659167 CTCACCTTCTCCACCTCGGCCAGGAAGGCATCTGTCAGGTCTCGAGGTGGCTCGGCTGGGTTCCGAGTCATCCTGTGCTCAGTCACCAGCTCATCTACAAGAGCCAGGAATGCTTT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82791652 116 + 104043685 TTCACCTTCTCCACCTCAGCCAGGAAGGCATCAGTCAAATCTCGGGGTGGCTGTGCAGGATCCCAGGTCGAGTCGTGCTCAATTAACATCTTATTCACTAAGGCTATGAATGAATT i mm10.chr15 I 1 I 4 s canFam3.chr10 46073731 116 - 69331447 CTCACTTTTTCTATCTCATCCACGAAGGCGTCGATCAGGTGTCGGGGTGGCTGGGTGGGGTCCCGGGTCTTCCTGTGCTCCTGGATCATTTCATTTGTCAGGGTTATGAAGGCCTT i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I a score=602997.000000 s hg38.chr22_GL383582v2_alt 61775 45 + 162811 TTGGGAGCGTAGGACCTTGCCAGCCAGCCCTGGGATGCGCAGGAG s panTro5.chr22 28842122 45 + 37823149 TTGGGAGCATAGGACCTTGCCAGCCAGCCCTGGGATGCGCAGGAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116778 45 + 50109623 TTGGGAGCGTAGGACCTTGCCAGCCAGCCCTGGGATGCGCAGGAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138757 45 + 4464012 TTGGGAGCGTAGGACCTTGCCAGCCAGCCCTGGGATGCGCAGGAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636204 45 - 115148730 TTGGGAATGTAGGACCTTGCCAGCCACTCCAGGGATACGCAGGAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250653 45 + 92844088 TTGGGAGCGTAGGACCTTGCCAGCCAGCCCAGGGATGCGCAGGAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595593 45 - 96509753 TTGGGAGCGTAGGACCTTGCCAGCCAGCCCAGGGATGCGCAGGAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087633 45 - 13098629 TTGGGAGCGTAGGACCTTGCCAGCCAGCGCTGGGATGCGCAGGAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054163 45 - 4483953 TTGGGAGCGTAGGACCTTGCCAGCCAGCGCTGGGATATGCAGGAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24684974 45 + 33263144 TTGGGAGCGTAGGACCTTGCCAGCCAGCGCTGGGATGCGCAGGAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13959158 45 - 14338769 TTGGGAGCGTAGGACCTTGCCAGCCAGCGCTGGGATGCGCAGGAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 902385 45 + 1946073 TTGGGAGGGTAGGACCTTGCCAGCCAGCGCTGGGATGCGCAGGAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931464 45 - 2117846 TTGGGAGCGTAAGACCTTGCCAGCCAGCCACGGGATGCGCAGGAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8846516 45 - 16357246 TTGGGAGCGTAAGACCTTGCCAGCCAGCCACGGGATGCGCAGGAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327323 45 - 1807191 TTGGGAGCGTAACACCTTGCCAGCCAGCCATGGGATGCGCAGGAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6618 45 + 5963231 TTGGGAGGGTAAGACCTTGCCAGCCAGCCACGGGATGCGCAGGAG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5689810 45 + 108171978 CTGGGCAGAGATCACCTTGCCAGCCAGCCATGGGATGCGCAGGAG i micMur3.chr7 C 0 I 526 s otoGar3.GL873526 36274992 45 - 42659167 CTGTGCTGGGAAGACCTTCTGAGCTAGCCCTGGGATGCGCAGGAG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82791772 41 + 104043685 TTGGGG----AAGGCTTTATCAGGCAAACCAGGGATGTGTAGTAG i mm10.chr15 I 4 C 0 s canFam3.chr10 46073847 45 - 69331447 CTGCGCGGAGAAGACCTTGCTGGCCAGTCCCGGGATGTGCAGGAG i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5040711 538 - 6317780 I a score=486421.000000 s hg38.chr22_GL383582v2_alt 61820 42 + 162811 GAGGGGGACAACATTCAGCATCTACAGCTGACACAGAACGGG s panTro5.chr22 28842167 42 + 37823149 GAGGGGGACAACATTCAGCATCTACAGCTGACACAGAACGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116823 42 + 50109623 GAGGGGGACAACATTCAGCATCTACAGCTGACACAGAACGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138802 42 + 4464012 GAGGGGGACAACATTCAGCACCTACAGCAGACACAGAACGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636249 42 - 115148730 GATGGGGACAGTATTCAGCACCTACACCAGACACAGAACGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250698 42 + 92844088 GAGGGGGACGGCATTCAGCACCTACACCAGACACAGAACGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595638 42 - 96509753 GAGGGGGATGGCATTCAGCACCTACACCAGACACAGAACAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087678 42 - 13098629 GAGGGGGACGGCATTCAGCACCTACACCAGACACAGAACGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054208 42 - 4483953 GAGGGGGACAGCATTCAGCACCTACACCAGACACAGAACAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685019 42 + 33263144 GAGGGGGATGGCATTCAGCACCTACACCAGACACAGAACGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13959203 42 - 14338769 GAGGGGGACGGCATTCAGCACCTACACCAGACACAGAACAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 902430 42 + 1946073 GAGGGGGATGGCATTCAGCACCTACACCAGACACAGAACGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931509 42 - 2117846 GACAGGGATGGAATTCAGCACCTGCACCAGACACAGAATGGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8846561 42 - 16357246 GACAGGGATGGCATTCAGCACCTGCACCAGACACAGAACGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327368 42 - 1807191 GACAGGGATGGCATTCAGCACCTGCACCAGACACAGAACAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6663 42 + 5963231 GACAGGGATGGCATTCAGCACCTGCACCAGACACAGAACGGG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36275037 42 - 42659167 CATGGGGACAGCATTCAGTACCTGTGCCAGCCACAGAAGGGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82791813 42 + 104043685 CATTGGGATGGCATTCAGCACCTGTGAAAGAAACAAAACAGG i mm10.chr15 C 0 I 242 s canFam3.chr10 46073892 40 - 69331447 CACGGGGATGGAGTTCAGGGCCTGCG--GGGTGCAGATGGGG i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5040711 538 - 6317780 I e micMur3.chr7 5689855 526 + 108171978 I a score=151827.000000 s hg38.chr22_GL383582v2_alt 61862 16 + 162811 GTCTCAATCCCTCCTG s panTro5.chr22 28842209 16 + 37823149 GTCTCAATCCCTCCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116865 16 + 50109623 GTCTCAATCCCTCCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138844 16 + 4464012 GTCTCAATCCCTCCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636291 16 - 115148730 GTCTCAATCCCTCCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250740 16 + 92844088 GTCTCCATCTCTCCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595680 16 - 96509753 GTCTCAATCTCTCCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087720 16 - 13098629 GTCTCAATCTCTCCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054250 16 - 4483953 GTCTCAATCTCTCCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685061 16 + 33263144 GTCTCAATCTCTCCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13959245 16 - 14338769 GTCTCAATCTCTCCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 902472 16 + 1946073 GTCTCAATCTCTCCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931551 16 - 2117846 GTCTGGATTCCTCCTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8846603 16 - 16357246 ATCTGGATTCCTCCTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327410 16 - 1807191 GTCTGGATTCCTCCTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6705 16 + 5963231 GTCTGGATTCCTCCTA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36275079 16 - 42659167 GTCTGGGTCTCCCACG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46073932 9 - 69331447 -------CCCTGCCTG i canFam3.chr10 C 0 C 0 e mm10.chr15 82791855 242 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5040711 538 - 6317780 I e micMur3.chr7 5689855 526 + 108171978 I a score=733330.000000 s hg38.chr22_GL383582v2_alt 61878 61 + 162811 TGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCTGCCTCCAGGGAAGACCCAGGGCC s panTro5.chr22 28842225 61 + 37823149 TGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCTGCCTCCAGGGAAGACCCAGGGCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116881 61 + 50109623 TGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCTGCCTCCAGGGAAGACCCAGGGCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138860 60 + 4464012 TGCTCT-GCATTCACCTGGACCAGTCTCAGTCCCCAGCTGCCTCCAGGGAAGA-CCAGGGCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636307 61 - 115148730 TGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCTGCCTCCAGGGAAGACCCAGGGCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250756 61 + 92844088 TGCTCT-GTGTTCACCTGGACCAGTCTCGGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595696 61 - 96509753 TGCTCT-GTGTTCACCTGGACCAGTCTCAGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087736 61 - 13098629 TGCTCT-GTGTTCACCTGGACCAGTCTCAGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054266 61 - 4483953 TGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685077 61 + 33263144 TGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13959261 61 - 14338769 TGCTCT-GCGTTCACCTGGACCAGTCTCAGGCTCCAGCTGTCTCCAGGGAAGACCCAGGGCC i manLeu1.NW_012102031v1 C 0 T 7381 s colAng1.NW_012115588v1 902488 61 + 1946073 TGCTCT-GCGTTCACCTGGACCAGCCTCAGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931567 61 - 2117846 TACTCT-GCCTTCACCTGGACCAGTCTCAGGCCCCAGACCTCTCCAGGGAAGATCCAGGGCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8846619 61 - 16357246 CACTCT-GCCTTCACCTGGACCAGTCTCAGGCCCCAGCCCTCTCCAGGGAAGACCCAGGGCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327426 61 - 1807191 CACTCT-GCCTTCACCTGGACCAGTCTCAGACCCCAGCCCTCTCCAGGGAAGACCCAGGGCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6721 61 + 5963231 CACTCT-GCCTTCACCTGGACCAGTCTCAGGCCCCAGCCCTCTCCAGGGAAGACCCAGGGCC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36275095 61 - 42659167 TGCTCA-GCATTCATCTGCACCAGTCTCAGACCCTAGCCTCCCCCAGGGTGGACACAAGGCC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792097 58 + 104043685 TGCTCA-GTGTTTACCTGGACCAGTCACAGTTCTCAGCCTCTTCCGCAATGGACTCAGA--- i mm10.chr15 I 242 C 0 s canFam3.chr10 46073941 46 - 69331447 TGCTCAGGGGCTCGCCGCCACCAGTCT--GGTCCC-GCCGCCTCCAGGG------------- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5040711 538 - 6317780 I e micMur3.chr7 5689855 526 + 108171978 I a score=2455848.000000 s hg38.chr22_GL383582v2_alt 61939 261 + 162811 TACCTGTCC-----CCACCACTCACCTCCCCAAGTCCCTCCCCAAGTGCCAGCCTCCACCCTCTCTCC--Ttgccct-ggg--ctgcca-gaggagaaacctaaaaatcaaaatctccaatgtggacaggaggcacagggtccttg---------gcc----tttcTTGGTGCCCCCTGACCCGGGCACACCTCTCCCACGACCGTATCTGAGATGTCTCCTCCTCCTCAA--GGCCCTTCCTCTAGCAGTGAGCTCTTCTGGAATGTCCTTTCCCAAAC-CACTCTA s panTro5.chr22 28842286 261 + 37823149 TGCCTGTCC-----CCACCACTGACCTCCCCAAGTCCCTCCCCAAGTGCCAGTCTCCACCCTCTCTCC--TTGCCCT-GGG--CTGCCA-GAGGAGAAACCTAAAAATCAAAATCTCCAATGTGGACAGGAGGAACAGGGTCCTTG---------GCC----TTTCTTGGTGCCCCCTGACCCGGGCACACctctcccacgaccgtatctgagatgtctcctcctcctcaa--ggcccttcctctagcagtgagctcttctggaatgtcctttcccaaac-cactcta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41116942 249 + 50109623 TGCCTGTCC-----CCACCACTGA------------CCTCCCCAAGTGCCAGTCTCCACCCTCTCTCC--TTGCCCT-GGG--CTGCCA-GAGGAGAAACCTAAAAATCAAAATCTCCAATGTGGACAGGAGACACAGGGTCCTTG---------GCC----TTTCTTGGTGCCCCCTGACCCGGGCACACctctcccacgaccgtatctgagatgtctcctcctcctcaa--ggcccttcctctagcagtgagctcttctggaatgtcctttcccaaac-cactcta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3138920 259 + 4464012 TGCCTGTCC-----CTACCACTGACCT-CCCAAGTCCCTCCCCAAGTGCCAGCCTCCACCCTCTCTCC--Ttgccct-ggg--ctggca-gaggagaaacctaaaaatcaaaatttccaatgtggacaggaggcacagggtccttg---------gcc----tttcttggtgccccctgacccgggcacacctctcccacgaccgtatctgagatgtcccctcctcctc-a--ggtccttcctctagcagtgagctcttctggaacgtcctttcccaaac-cactcta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636368 249 - 115148730 TGCCTGTCC-----CCACCACTGA------------CCTCCCCAAGTGCCAGCCTCCACCCTCTCTCC--TTGCCCT-GGG--ATGCCA-GAGGAGAAACCTAAAAATCAAAATCTCCAATGTGGACAGGAGGCAcagggtccttg---------gcc----tttcttggtgccccctgacccgggcacacctctcccatgaccgtatctgagatttcccctcctcctcca--ggcccttcctctagcagtgagctcttctgcaatgtccttttccaaac-cactcta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84250817 260 + 92844088 GGCCTGTCT-----CCACCACTGACCTCCCCAAGTTCCTCCTCAAGTACCAGCCTCCACCCTCTCTCC--TTGCCTT-GGG--CTGCCA-GAGGAGAAATCT-AAAATAAAAATCTCTAATGTGGACAGGAGGCACAGGGTCCTTG---------GCC----TTTCTTGGTGCCCCCTAACCCAGGCACATCTCTCCCCTGACGGTGTCTGAGATTTCTCCTCCTCCTCCA--GGCCCTTCCTCTAGCAGTGAGCTCTCCTGGAATATCCTTTCCCAAAC-CCTTCTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87595757 260 - 96509753 GGCCTGTCT-----CCACCACTGACCTCCCCAAGTTCCTCCTCAAGTACCAGCCTCCACCCTCTCTCC--TTGCCTT-GGG--CTGCCA-GAGGAGAAATCT-AAAATAAAAATCTCTAATGTGGACAGGAGGCACAGGGTCCTTG---------GCC----TTTCTTGGTGCCCCCTAACCCAGGCATATCTCTCCCCTGACGGTGTCTGAGATTTCTCCTCCTCCTCCA--GGCCCTTCCTCTAGCAGTGAGCTCTCCTGGAATATCCTTTCCCAAAC-CCTTCTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7087797 260 - 13098629 GGCCTGTCT-----CCACCACTGACCTCCCCAAGTTCCTCCTCAAGTACCAGCCTCCACCCTCTCTCC--TTGCCTT-GGG--CTGCCA-GAGGAGAAATCT-AAAATAAAAATCTCTAATGTGGACAGGAGGCACAGGGTCCTTG---------GCC----TTTCTTGGTGCCCCCTAACCCAGGCATATCTCTCCCCTGACGGTGTCTGAGATTTCTCCTCCTCCTCCA--GGCCCTTCCTCTAGCAGTGAGCTCTCCTGGAATATCCTTTCCCAAAC-CCTTCTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054327 260 - 4483953 GGCCTGTCT-----CCACCACTGACCTCCCCAAGTTCCTCCTCAAGTACCAGCCTCCACCATCTCTCC--TTGCCTT-GGG--CTGCCA-GAGGAGAAATCT-AAAATAAAAATCTCTAATGTGGACAGGAGGCACAGGGTTCTTG---------GCC----TTTCTTGGTGCCCCCTGACCCAGGCATACCTCTCCCCTCACGGTGTCTGAGATATCTCCTCCTCCTCCA--GGCCCTTCCTCTAGCAGTGAGCTCTCCTGGAATGTCCTTTCCCAAAC-CCTTCTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685138 260 + 33263144 GGCCTGTCT-----CCACCACTGACCTCCCCAAGTTCCTCCTCAAGTACCAGCCTCCACCCTCTCTCC--TTGCCTT-GGG--CTGCCA-GAGGAGAAATCT-AAAATAAAAATCTCCAATGCGGACAGGAGGCACAGGGTCCTTG---------GCC----TTTCTTGGTGCCCCCTGACCCAGGCATACCTCTCCCCTCACGGTGTCTGAGATTTCCCCTCCTCCTCCA--GGCCCTTCCTCTAGCAGTGAGCTCTCCTGGAATGTCCTTTCCCAAAC-CCTTCTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13951941 260 - 14338769 GGCCTGTCT-----CCACCACTGACCTCCCCAAGTTCCTCCTCAAGTACCAGCCTCCACCCTCTCTCC--TTGCCTT-GGG--CTGCCA-GAGGAGAAATCT-AAAATAAAAATCTCTAATGTGGACAGGAGGCACAGGGTCCTTG---------GCC----TTTCTTGGTGCCCCCTGACCCAGGCATACCTCTCCCCTCACGGTGTCTGAGATTTCTCCTCCTCCTCCA--GGCCCTTCCTCTAGCAGTGAGCTCTCCTGGAATGTCCTTTCCCAAAC-CCTTCTA i manLeu1.NW_012102031v1 T 7381 C 0 s colAng1.NW_012115588v1 902549 260 + 1946073 GGCCTGTCT-----CCACCACTGACCTCCCCAAGTTCCTCCTCAAGTACCAGCCTCCACCCTCTCTCC--TTGCCTT-GGG--CTGCCA-GAGGAGAAATCT-AAAATAAAAATCTCTAATGTGGACAGGAGGCACAGGGTCCTTG---------GCC----TTTCTTGGTGCCCCGTGACCCGGGCATACCTCTCCCCTGACCGTGTCTGAGATTTCCCCTCCTCCTCCA--GGCCCTTCCTCTAGCAGTGAACTCTCCTGGAATGTCCTTTCCCAAAC-CCTTCTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931628 248 - 2117846 TGCCTGTCC-----CCACCATTGA------------CCTCCCCAAGTGCCAGCTTCCACCCTTTCTCT--TTGCTCT-GGG--CTGGCA-GAGGAGAAACCT-AAAATCAAATTCTCCAATGTAAACAGGAGGCACAGGGTTCATG---------GCC----TCTCTTGGTGGTCCCTGACCTGGGCACACCTCTCTCACGACCATGTCTGAGGTTTCCCCTCCTCCTCCA--GGCCCTTCCTCTTGCAGTGGGCTCTCCTTGAATATCCTATCCTGAAC-CCCTCTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8846680 261 - 16357246 TGCCTGTCC-----CCACCACTGACCT-CCCAAGTCCCTCCCCAAGTGCCAGCCTCCATGTTCTCTCC--TTACCTT-GGG--CTGGCA-AAGGAGAAACCT-AAAATCGAATTCTCCAATGTAAACAGGAGGCACAGGGTTCATG---------GCC----TCTCTTGGTGCCCCCTGACCTGGGCACACCTCTCCCACGACCGTGTCTGAGGTTTCCCCTCCTCCTCCAGCGGCCCTTCCTCTTGCAGTGGGCTCTCCTTGAATATCCTATCCCAAAA-CCCTCTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327487 259 - 1807191 TGCCTGTCC-----CCACCACTGACCT-CCCAAGTCCCTCCCCAAGTGCCAGCTTCCACCCTCTCTCT--TTGCTCT-GCT--CTGGCA-GAGGAGAAACCT-AAAATCAAATTCTCCAATGTAAACAGGAGGCACAGGGTTCACG---------GCC----TCTCTTGGTGCCCCCTGACCTGGGCACACCTCTCCCACGACGGTGTCTGAGGTTTCTCCTCCTCCTCCA--GGCCCTTCCTCTTGCAGTGGGTTCTCCTTGAATATCCTATCCCAAAC-CCCTCTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 6782 260 + 5963231 TGCCTGTCC-----CCACCGCTGACCT-CCCAAGTCCCTTCCCAAGTGCCAGCCTCCATGTTCTCTCTTCTTACCTTGGGG--CTGGCA-GAGGAGAAACCT-AAAATCAAATTCTCCAATGTAAACAGGAAGCACAGGGTTCATG---------GCC----TCTCTTGGGGCCcc--gacctgggcacacctttcccacgaccgtgtctgaggtttcccgtcctcctcca--ggcccttcctcttgcagtgggctctcctggaatgtcctttcccaaac-ccctcta i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36275156 236 - 42659167 TGCATGACC-----CCACCATTGA-----CCGGGCCCCTCCCAGAGTAGAAGTC-CTACACTCTCTCC--TGGCCCT-GGG--CTGACACAAGGATAAACCC-ACAGTTGAAATGTCC-----------------TGAGATTCTTG---------GCTCGAATATTCCAGTGACTC------TGGGCCCACCTTTCCCACAGTGCTGTCTGAGATTTC-CCGCCGCCTCTG--TGCCTCTCCTCTTGGAGTGGCCTCTCCAGCAATCCCCTTTTCTCATCGTCCTGCG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792155 245 + 104043685 -ATCTGTCC-----CTACCCATCACCT------GCTTCTTCCCCAGTTCTAGCCTGCATGCTCTCCTG--TAGCTCA-GGG--TGA--A-GAAAAGAAATAC-----TCTACCCTTCAAATATAACAGGCTTGTGTGGTTTCCCTGCAGGCTCACCCC----CTTTCTAGAGCCAT-TAACCTTGGTCTGCTCCTCCCCTCCACTTATCTGAGGTTTGTCAACACCC---A--AGCCTTTCTCCCTGCACTTGGCCATCACACCAGGCCC-------ACC-CACCCTG i mm10.chr15 C 0 I 43 s canFam3.chr10 46073987 172 - 69331447 TGCCCGCCCCCCCGCCCCCGTTGACCC-----GGTTCCGCCCTAAGTCC--GCCTCGATCCTCTTTCC--TGGCCCC-GGGGACCCCTG-AAGGATCAATCT-CGCCTCTAGATCT-------------------CGGGGGCTCTG---------GCG----GCTTCCGATG----------GAGGCGCAAGTgccccgccgccccgcccgcga-----------cccccc--agcccg------------------------------------------------- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5040711 538 - 6317780 I e micMur3.chr7 5689855 526 + 108171978 I a score=579928.000000 s hg38.chr22_GL383582v2_alt 62200 64 + 162811 TGCAAACCCTGCTCCTTGGAGGTCCGGCTGCA-GT--CCCGGCACCTCTCAGGAGCTCGCCCTGCAG s panTro5.chr22 28842547 64 + 37823149 tgcaaaccctgctccttggaggtccggctgca-gt--cccggcacctctcaggagctcgccctgCAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117191 64 + 50109623 tgcaaaccctgctccttggaggtccggctgca-gt--cccagcacctctcaggagctcgccctgCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139179 64 + 4464012 tataaaccctgctcctcggaggtccggctgca-gt--cccggcacctctcaggagctcgccctgCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636617 64 - 115148730 tgcaaaCCCTGCCCCTTAGAGGTCTGGCTGCA-GT--CCCAGCACCTCTCAGGAACTCGCCCTGCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251077 63 + 92844088 TGCAAACCC-GCTCCTCTGAGGCCCCGCTGCA-GC--CCGGGCACCTCTCAGGAGCTCGCCCTGCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596017 63 - 96509753 TGCAAACCC-GCTCCTCTGAGGCCCCGCTGCA-GC--CCGGGCACCTCTCAGGAGCTCGCCCTGCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088057 63 - 13098629 TGCAAACCC-ACTCCTCTGAGGCCCCGCTGCA-GC--CCGGGCACCTCTCAGGAGCTCGCCCTGCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054587 63 - 4483953 TGCAAACCC-ACACCTCTGAGGCCCTGCTGCA-GC--CCGGGCACCTCTCAGGAGCTCGCCCTGCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685398 63 + 33263144 TGCAAACCC-ACTCCTCTGAGGCCCCGCTGCA-GC--CCGGGCACCTCTCAGGAGCTCGCCCTGCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13952201 63 - 14338769 TGCAAACCC-ACTCCTCTGAGGCCCTGCTGCA-GC--CCGGGCACCTCTCAGGAGCTCGCCCTGCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 902809 63 + 1946073 TGCAAACCC-ACTCCTCTGAGGCCCCGCTGCA-GT--CCGGGCACCTCTCAGGAGCTCGCCCTGCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931876 64 - 2117846 TGCAAATTCTGCTCCTCAGAGGCCTGGCTGCA-GC--ATCGACACCTCTGAGGAGCTTGCCCTGTGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8846941 66 - 16357246 CGCAAATCCTGCTCCTCAGAGGCTCGGCTGCA-GCAAACCGGCACCTCTGAGGAGCTTGCCCTGCGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327746 64 - 1807191 TGCAAATCCTGCTCCTCAGAGGCCCGGCTGCA-GC--ACTGGCACCTCTGAGAAGCTTGCCCTGCAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7042 64 + 5963231 tgcaaatcctgctcctcagaggcccggctgca-gc--accggcacctctgaggagcttgccctgcag i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36275392 65 - 42659167 CGCAAACCTTCCTTCACAGAGGCCCAGCTGCAGGC--CCAGGCACCTGCCCGGAGCTCTCCCTGCTC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46074159 25 - 69331447 --------------------------------cgc--ACGCGCTCCTCCCTGGGGCTCC-------- i canFam3.chr10 C 0 C 0 e mm10.chr15 82792400 43 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5040711 538 - 6317780 I e micMur3.chr7 5689855 526 + 108171978 I a score=737921.000000 s hg38.chr22_GL383582v2_alt 62264 72 + 162811 AGACCCTGCGGTCCC--TCGCTCCACATCTCTCACAGAAAGCCCAGCTCCTCCTTCAATCCCTTCTGAGCTAGG s panTro5.chr22 28842611 72 + 37823149 AGACCCTGCGGTCCC--TCGCTCCACATCTCTCGCAGAAAGCCCAGCTCCTCCTTCAATCCCTCCTGAGCTAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117255 72 + 50109623 AGACCCTGCGGTCCC--TCGCTCCACATCTCTCGCAGAAAGCCCAGCTCCTCCTTCAATCCCTCCTGAGCTAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139243 72 + 4464012 AGACCCCTCGGTCTC--TCGCTCCACACCTCGCGCAGGAAGCCCAGCTCCTCCTTCGATCCCTCCTGAGCTAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636681 72 - 115148730 AAACCCTGCGGTCCC--TCGCTCCACACCTCGTACAGGAAGCCCGTCTCCTCCTTCAATCCCTCCTCAACTAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251140 72 + 92844088 AGACCCTGCGGTCCC--TCGCTCCGCACCTCGCGCAGGAAGCCCGACTCCTCCTTCAATCCCTCCTGTGCTAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596080 72 - 96509753 AGACCCTGCGGTCCC--TCGCTCCGCACCTCGCGCAGGAAGCCCGACTCCTCCTTCAATCCCTCCTGTGCTAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088120 72 - 13098629 AGACCCTGCGGTCCC--TCGCTCCGCACCTCGCGCAGGAAGCCCGACTCCTCCTTCAATCCCTCCTGTGCTAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054650 72 - 4483953 AGACCCTGCGGTCCC--TCGCTCCGCACCTCACGCAGGAAGCCCGACTCCTCCTTCAATCCCTCCTGTGCTAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685461 72 + 33263144 AGACCCTGCGGTCCC--TCGCTCCGCACCTGGGGCAGGAAGCCCGACTCCTCCTTCAATCCCTCCTGTGCTAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13952264 72 - 14338769 AGACCCTGAGGTCCC--TGGCTCCGCACCTCACGCAGGAAGCCCGACTCCTCCTTCAATCCCTCCTGTGCTAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 902872 72 + 1946073 AGACCCTGCGGTCCC--TCGCTCCGCACCTGGTGCAGGAAGCTCGACTCCTCCTTCAATCCCTCCTGCGCTAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1931940 72 - 2117846 AGTCCCCGCAGTCCC--TGGCTCTGCACCTGGGGTAGGAAGCCCGACCCCTCCTTCAATCCTTCCTGCGCTAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847007 71 - 16357246 AGT-CCCGCAGTCCC--TGGCTCTGCACCTGGGGCAGGAAGCCCGACCCCTCCTTCAATCCCTCCTGCGCTAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327810 72 - 1807191 AGTCCCCGCAGTCCC--TGGCTCTGCACCTGGGGCAGGAAGCCCGACCCCTCCTTCAATCCCTCCTGCGCTAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7106 72 + 5963231 agtccccgcagtCCC--TGGCTCTGCACCTGGGGCAGGAAGCCCGACCCCTCCTTCAATCCCTCCTGTGCTAGG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36275457 73 - 42659167 AGACCC-GCGACCCCCATCTCCCTGAACCTCGCGTAGGAAGCCAGAATCCTCCCGAACTGCCTCCTGCGCCAAA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792443 71 + 104043685 AGGCCC-ACTGCCCC--GAGCCACATACCTCTCCGACGAAGCCAGTGTCTTCTCCTAAGCTTTCCTTCAATGTT i mm10.chr15 I 43 C 0 s canFam3.chr10 46074184 56 - 69331447 ------------------CGCCGCGCACCTCACGCAGGAAGCCGGAGTCCTGCTTCAGCGCCTGCTGGGTGAGC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5040711 538 - 6317780 I e micMur3.chr7 5689855 526 + 108171978 I a score=1645470.000000 s hg38.chr22_GL383582v2_alt 62336 107 + 162811 TCCAGTAGCCTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCACCCGCAGGTGAGGGAGGCGATCACGTTGCTCGCCGCTTTGTTCAGGAGGCCGTTGGGGTGAAA s panTro5.chr22 28842683 107 + 37823149 TCCAGTAGCCTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGCAGGTGAGGGAGGCGATCACGTTGCTCGCCGCTTTGTTCAGGAGGCCGTTGGGGCGAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117327 107 + 50109623 TCCAGTAGCCTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGCAGGTGAGGGAGGCGATCACGTTGCTCGCCGCTTTGTTCAGGAGGCCGTTGGGGCGAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139315 106 + 4464012 TCCAGCAGCCTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGCAGGTGAGGGAGGCGATCACGTTGCTCGCCGC-TTGTTCAGGAGGCCGTTGGGGCGAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636753 107 - 115148730 TCCAGCAGCCTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGCAGGTGAGGGAGGCGATCACGTTGGTCGCCGCTTTGTTCAGGAGGCCGTTGGGGCGAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251212 107 + 92844088 TTTAGCAGCCTGAGGAAGCGAGGGTCGTCGTACTCAAAGCGGCACCCGCAGGTGAGGGAGGCAATTACGTTGCTCGCCGCTTTGTCCAGGAGGCCATTGGGGCGAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596152 107 - 96509753 TTCAGCAGCCTGAGAAAGCGAGGGTCGTCGTACTCAAAGCGGCACCCGCAGGTGAGGGAGGCAATTACGTTGCTCGCCGCTTTGTCCAGGAGGCCATTGGGGCGAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088192 107 - 13098629 TTCAGCAGCCTGAGAAAGCGAGGGTCGTCGTACTCAAAGCGGCACCCGCAGGTGAGGGAGGCAATTACGTTGCTCGCCGCTTTGTCCAGGAGGCCATTGGGGCGAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054722 107 - 4483953 TCCAGCAGCCTGAGAAAGCGAGGGTCGTCGTACTCAAAGCGGCACCCGCAGGTGAGGGAGGCAATTACGTTGCTCGCCGCTTTGTACAGGAGGCCATTGGGGCGAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685533 107 + 33263144 TCCAGCAGCCTGAGGAAGCGAGGGTCGTCGTACTCAAAGCGGCACCCGCAGGTGAGGGAGGCAATTACGTTGCTCGCCGCTTTGTCCAGGAGGCCATTGGGGCGAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13952336 107 - 14338769 TTCAGCAGCCTGAGAAAGCGAGGGTCGTCGTACTCAAAGCGGCACCCGCAGGTGAGGGAGGCAATTACGTTGCTCGCCGCTTTGTCCAGGAGGCCATTGGGGCGAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 902944 107 + 1946073 TCCAGCAGCCTGAGAAAGCGAGGGTCGTCGTACTCAAAGCGGCACCCGCAGGTGAGGGAGGCAATTACGTTGCTCGCGGCTTTGTCCAGGAGGCCATTGGGGCGAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932012 107 - 2117846 TCCAGCAGCCTGAGGAAGCGAGGGTCGTCATACTCGAAACGGTGCCCGCAGGTAAGGGTGGCAATTACGTTGCTCGCTGCTTTGTCCAGGAGTTCGTTGGGGCGGAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847078 107 - 16357246 TCCAGCAGCCTGAGGAGGCGAGGGTCGTCATACTCGAAGCGGTGCCCACAGGTGAGGGAGGCGATTACGTTGCTCGCCGCTTTGTTCAGGAGTTCGTTGGGGCGGAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327882 107 - 1807191 TCCAGCAGCCTGAGGAAGCGAGGGTCGTCATACTCGAAGCGGTGCCCGCAGGTGAGGGAGGCGATTACGTTGCTCGCCGCTTTGTCCAGGAGTTCGTTGGGGCGGAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7178 107 + 5963231 TCCAGCAGCCTGAGGAAGGGAGGGTCGTCATACTCGAAGCGGTGCCCGCAGGTGAGGGAGGAGATTACGTTGCTCGCCGCTTTGTCCAGGAGTTCGTTGGGGCGGAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5690381 107 + 108171978 TCCATTAGCCTGAGGAAGCGCTGGTCGTCGTACTCGAAGCGGCGCCCGTAGGTGAGGGACGCGATCACGTTGCCCACCGCTTTGTTCAGCAGCGCGTTGGGGCTAAA i micMur3.chr7 I 526 C 0 s proCoq1.NW_012136747v1 5041249 107 - 6317780 TCCATTAGTCTGAGGAAGCGCTGGTCGTCGTACTCGAAGCGGCGTCCGTAGGTGAGGGACGCGATCACGTTGCCCACCGCTTTGTTCAGGAGCTCGCTGGGGCTAAA i proCoq1.NW_012136747v1 I 538 C 0 s otoGar3.GL873526 36275530 107 - 42659167 GTCAACAGCCGGAGGAAGCGCGTGTTGTTGTACTCAAAGCGACGCCCATAGGCGAGCGAGGCGATCACGTTGGTCACCGCTTTGTTAAGGAGTTCGCTGGGGCTAAA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792514 107 + 104043685 TTGAGCATCCTGTTGAAGAAAGGGTCTTCATACTCAAATCGACGAGCATAAATGAGGGAGGCGATCACGTTGCTCACAGCTTTACTTAGGAGGGGGCTGGGATTGAA i mm10.chr15 C 0 C 0 s canFam3.chr10 46074240 107 - 69331447 TCCAGCAGCTGGAGCAGCCACTGGGCGTCGTACTCTAAGCGGCGCCCTTAGGTGAGCGACGAGATCACGTTGCCTACCGCCTTGATTCTCAGAGCGCCGGGGCCGAA i canFam3.chr10 C 0 I 208 e dasNov3.JH570235 50157 762 + 1056298 I a score=54511.000000 s hg38.chr22_GL383582v2_alt 62443 3 + 162811 GGG s panTro5.chr22 28842790 3 + 37823149 GAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117434 3 + 50109623 GGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139421 3 + 4464012 GGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636860 3 - 115148730 GGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251319 3 + 92844088 GGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596259 3 - 96509753 GGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088299 3 - 13098629 GGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054829 3 - 4483953 GGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685640 3 + 33263144 GGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13952443 3 - 14338769 GGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 903051 3 + 1946073 GGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932119 3 - 2117846 GGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847185 3 - 16357246 GGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327989 3 - 1807191 GGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7285 3 + 5963231 GGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5690488 3 + 108171978 GGG i micMur3.chr7 C 0 I 9326 s proCoq1.NW_012136747v1 5041356 3 - 6317780 GGG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36275637 3 - 42659167 GGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792621 3 + 104043685 GGG i mm10.chr15 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46074347 208 - 69331447 I a score=394443.000000 s hg38.chr22_GL383582v2_alt 62446 32 + 162811 GCGTCCTGGGGGCGGGAGATGCGGGTCAGGGG s panTro5.chr22 28842793 32 + 37823149 GCGTCCTGGGGGCGGGAGATGCGGGTCAGGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117437 32 + 50109623 GCGTCCTGGGGGCGGGAGATGCGGGTCAGGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139424 32 + 4464012 GCGTCCTGGGGGCGGGAGATGCGGGTCAGGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636863 32 - 115148730 GCGTCCTGGGGGCGGGAGATGCGGGTCAGGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251322 32 + 92844088 GCATCCTGGGGGCGGGAGATGCGGGTCAGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596262 32 - 96509753 GCATCCTGGGGGCGGGAGATGCGGGTCAGGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088302 32 - 13098629 GCATCCTGGGGGCGGGAGATGCGGGTCAGGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054832 32 - 4483953 GCATCCTGGGGGCGGGAGATGCGGGTCAGGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685643 32 + 33263144 GCATCCTGGGGGCGGGAGATGCGGGTCAGGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13952446 32 - 14338769 GCATCCTGGGGGCGGGAGATGCGGGTCAGGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 903054 32 + 1946073 GCATCCTGGGGGCGGGAGATGCGGGTCAGGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932122 32 - 2117846 GCGTCCTGGGGTCGGGAGATGAGGGTTAGGGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847188 32 - 16357246 GCGTCCTGGGGCCAGAAGATGCGGGTCAGGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1327992 32 - 1807191 GCGTCCTGGGGTCGGGAGATGCGGGTCAGGGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7288 32 + 5963231 GCGTCCTGGGGTCGGGAGATGCGGGTCAGGGG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5041359 29 - 6317780 CCGTCCTGGGG---AGGGATGCGGCTCAGGGA i proCoq1.NW_012136747v1 C 0 I 45 s otoGar3.GL873526 36275640 30 - 42659167 GCGTCCTAGGGT--TGGGATATGGGTCAGGGG i otoGar3.GL873526 C 0 I 4 s mm10.chr15 82792624 27 + 104043685 ATGTTCTAGGATT-GGAGATGCAAGCAA---- i mm10.chr15 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46074347 208 - 69331447 I e micMur3.chr7 5690491 9326 + 108171978 I a score=371109.000000 s hg38.chr22_GL383582v2_alt 62478 40 + 162811 TCGCCTTCCCAGTCCTCCACCTTCCCAGTTCCCGCTTTGT s panTro5.chr22 28842825 40 + 37823149 TCGCTTTCCCAGTCCTCCACCTTCCCAGTTCCCGCTTTGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117469 40 + 50109623 TCGCTTTCCCAGTCCTCCACCTTCCCAGTTCCCGCTTTGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139456 40 + 4464012 TCGCCTTCCCGGTCCTCCACCTTCCCAGTTCCCGCTTTGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636895 40 - 115148730 TTGCCTTCCCGGTCCTCCACCTTCCCAGTTCCCACTTTGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251354 40 + 92844088 TCGCTTTCCCCGTCCCCCACCTTCCCAGTTCCCGCCTTGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596294 40 - 96509753 TCGCTTTCCCCGTCCCCCACCTTCCCAGTTCCCGCCTTGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088334 40 - 13098629 TCGCTTTCCCCGTCCCCCACCTTCCCAGTTCCCGCCTTGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054864 39 - 4483953 TCGCTTT-CCCGTCCCCCACCTTCCCAGTTCCCGCCTTGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685675 40 + 33263144 TCGCTTTCCCCGTCCCCCACCTTCCCAGTTCCCGCCTTGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13952478 39 - 14338769 TCGCTTT-CCAGTCCCCCACCTTCCCAGTTCCCGCCTTGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 903086 40 + 1946073 TCGCTTTCCCCGTCCCCCACCTTCCCAGTTCCCGCCTTGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932154 39 - 2117846 TCGCCTTTCCTG-CCCCCATGTTCCCAGTTCCCGCCTTGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847220 40 - 16357246 TCGCCTTTCCTGTCCCCCATGTTCCCAGTTCCCGCCTTGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328024 40 - 1807191 TCGCCTTTCCCGTCCCCCAGGTTCCCAGTTCCCGCCTTGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7320 40 + 5963231 TCGCCTTTCCCATCCCCCACGTTCCCAGTTCTCGCCTTGT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36275674 36 - 42659167 CCTCCGGCCCAG--CCCCACCACCCGGGTCCTCTCCCT-- i otoGar3.GL873526 I 4 C 0 s mm10.chr15 82792651 38 + 104043685 --GTCATGATAGTGCTCTTCAGTCCCTGCTCACACTCTCC i mm10.chr15 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46074347 208 - 69331447 I e proCoq1.NW_012136747v1 5041388 45 - 6317780 I e micMur3.chr7 5690491 9326 + 108171978 I a score=160114.000000 s hg38.chr22_GL383582v2_alt 62518 13 + 162811 GCCCCTCTGCCCA s panTro5.chr22 28842865 13 + 37823149 GCCCCTCTGCCCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117509 13 + 50109623 GCCCCTCTGCCCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139496 13 + 4464012 GCCCCTGTGCCCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636935 13 - 115148730 GCCCCTCTACCCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251394 13 + 92844088 GCCCCTCTGCCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596334 13 - 96509753 GCCCCTCTGCCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088374 13 - 13098629 GCCCCTCTGCCCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054903 13 - 4483953 GCCCCTCTGCCCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685715 13 + 33263144 GCCCCTCTGCCCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13952517 13 - 14338769 GCCCCTCTGCCCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 903126 13 + 1946073 ACCCCTCTGCCCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932193 13 - 2117846 ACCCCTTTGCCCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847260 13 - 16357246 GCCCCTCTGCCCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328064 13 - 1807191 GCCCCTCTGCCCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7360 13 + 5963231 GCCCCTCTGCCCA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5041433 13 - 6317780 gcccctgcaccCG i proCoq1.NW_012136747v1 I 45 C 0 s otoGar3.GL873526 36275710 13 - 42659167 GCCTCTGCACCCA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792689 10 + 104043685 --ATCTCTA-ACA i mm10.chr15 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46074347 208 - 69331447 I e micMur3.chr7 5690491 9326 + 108171978 I a score=205037.000000 s hg38.chr22_GL383582v2_alt 62531 16 + 162811 TCACCCACTGGCTTGG s panTro5.chr22 28842878 16 + 37823149 TCACCCACTGGCTTGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117522 16 + 50109623 TCACCCACTGGCTTGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139509 16 + 4464012 TCACCTACCGGCTTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636948 16 - 115148730 TCACCCACCGGAGTGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251407 16 + 92844088 TCACCCACCGGCTTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596347 16 - 96509753 TCACCCACCGGCTTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088387 16 - 13098629 TCACCCACCGGCTTGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054916 16 - 4483953 TCACCCACCGGCTTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685728 16 + 33263144 TCACCCACCGGCTTGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13952530 16 - 14338769 TCACCCACCGGCTTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 903139 16 + 1946073 TCACCCACCGGCTTGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932206 16 - 2117846 TCACCCACCGTCATAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847273 16 - 16357246 TCACCCACCGTCATAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328077 16 - 1807191 TCACCCACCGTCATAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7373 16 + 5963231 TCACCCACCGTCATAG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5041446 16 - 6317780 TCACCCACCGGCGTGG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36275723 16 - 42659167 CCACCCACCGGCGTGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792699 16 + 104043685 TCACCCACCGGCCTCC i mm10.chr15 C 0 C 0 s canFam3.chr10 46074555 9 - 69331447 TCACCCACT------- i canFam3.chr10 I 208 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e micMur3.chr7 5690491 9326 + 108171978 I a score=577296.000000 s hg38.chr22_GL383582v2_alt 62547 37 + 162811 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGG s panTro5.chr22 28842894 37 + 37823149 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117538 37 + 50109623 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139525 37 + 4464012 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106636964 37 - 115148730 TCAGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251423 37 + 92844088 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596363 37 - 96509753 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088403 37 - 13098629 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCCG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054932 37 - 4483953 TCGGTGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685744 37 + 33263144 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13952546 37 - 14338769 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGG i manLeu1.NW_012102031v1 C 0 T 18638 s colAng1.NW_012115588v1 903155 37 + 1946073 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932222 37 - 2117846 TTGTTGAAGGCGAGACAGAGGCAGGCAGCTTCCTTGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847289 37 - 16357246 TTGTCGAAGGCGGCACAGAGGCAGGCAGCTTCCTTGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328093 37 - 1807191 TCATCGAAGGCGGCACAGAGGCAGGCAGCTTCCTTGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7389 37 + 5963231 TCGTCGAAGGCGGCACAGAGGCAGGCAGCTTCCTTGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5699817 37 + 108171978 TCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGA i micMur3.chr7 I 9326 C 0 s proCoq1.NW_012136747v1 5041462 37 - 6317780 TCTGCGAAGGCGGCACACAGGCAGGCGGCCTCCTCGG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36275739 37 - 42659167 TCAGCGAAGGCGGCACAGAGGCAGGAGGCCTCCTCGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792715 37 + 104043685 TTGGTGAAAGCATCGCAGAGGTGGCCAGCCTCCTCTG i mm10.chr15 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46074564 0 - 69331447 C a score=1782193.000000 s hg38.chr22_GL383582v2_alt 62584 119 + 162811 TCACCCACCGCTCCAGGGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGTGTCCGTAGTGTGCCAGAAACACCCCTGGGG-----------------------------------------------------------------------------------------------GCGGG------ s panTro5.chr22 28842931 118 + 37823149 TCACCCACTGCTCCAGC-ACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGTGTCCATAGCGTGCCAGGAGCACCTCTGGGA-----------------------------------------------------------------------------------------------GCGGG------ i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117575 118 + 50109623 TCACCCACTGCTCCAGC-ACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGTGTCCGTAGCGTGCCAGGATCACCCCTGGGG-----------------------------------------------------------------------------------------------GCGGG------ i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139562 118 + 4464012 TCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACG-GGGCCCATAGCGCGCCAGGATCACCCCTGGGG-----------------------------------------------------------------------------------------------GCGGG------ i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637001 214 - 115148730 TCACCCACTGTTCCAGCGACTTCTTGCCCAAGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCGTAGTGTGCCAGGAACACCCCTGGGGGCGGGACGGACACTTCAGAGCGGGACGGACACATGGGAGCGGGACGGACACATGGGAGCGGGACTGACACATGGGAGCGGGACTGACACATGGGAGCGGG------ i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251460 119 + 92844088 TCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGGCCATAGCGCGCCAGGAACACCCCTGGGG-----------------------------------------------------------------------------------------------GTGGG------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596400 119 - 96509753 TCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGGCCATAGCGCGCCAGGAACACCCCTGGGG-----------------------------------------------------------------------------------------------GTGGG------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088440 119 - 13098629 TCACCCACAGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGGCCATAGCGCGCCAGGAACACCCCTGGGG-----------------------------------------------------------------------------------------------GTGGG------ i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4054969 119 - 4483953 TCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGGCCATAGCGCGCCAGGAACACCCCTGGGG-----------------------------------------------------------------------------------------------GCGGG------ i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685781 119 + 33263144 TCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGCTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCGTAGCGCGCCAGGAACACCCCTGGGG-----------------------------------------------------------------------------------------------GCGGG------ i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13933945 119 - 14338769 TCACCCATTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCGTAGCGCGCCAGGAACACCCCTGGGG-----------------------------------------------------------------------------------------------GCAGG------ i manLeu1.NW_012102031v1 T 18638 C 0 s colAng1.NW_012115588v1 903192 119 + 1946073 TCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCAGGCCCGTAGCGCGCCAGGAACACCCCTGGGG-----------------------------------------------------------------------------------------------GCGGG------ i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932259 119 - 2117846 TCACCCACTGCTCCAGCAACTTCTTGCCCAGCCTCAAGTTGCGCAAGGTGGACACGCAGAATCGCCTCTGCTCGCGCCACGCGAGACCATAACGAGCCATGAACACCCCTGAGG-----------------------------------------------------------------------------------------------ACCGG------ i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847326 119 - 16357246 TCACCCACTGCTCCAGCAACTTCTTGCCCAGCCTCAAATTGCGCAAGGTGGACACGCAGAAGCGCCTCTGCTCGCGCCAGGCGAGACCATAACGAGCCATGAACACCCCTGGGG-----------------------------------------------------------------------------------------------ACCGG------ i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328130 119 - 1807191 TCACCCACTGCTCCAGCAAGTTTTTGCCCAGCCTCAGGTTGCGCAAGGTGGACACGCAGAAGCGCCTCTGCTCGCGCCACACGAGACCGTAACGAGCCATGAACACCCCTGGGG-----------------------------------------------------------------------------------------------ACCGG------ i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7426 119 + 5963231 TCACCCACTGCTCCAGCAACTTCTTGCCCAGCCTCAAGTTGCGCAAGGTGGACACGCAGAAGCGCCTCTGCTCGCGCCACGCGAGACCGTAACGAGCCATGAACACCCCTGGGG-----------------------------------------------------------------------------------------------ACAGG------ i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5699854 119 + 108171978 TCACCCACAGCTCCAGCGACTTCTTGCCCAGACCGAAGAAGCGCAGAGTGGACAAGGAGAAGCGCCGCTGCTCGCGCCACGCGGGCCCGTAACGCGCCAAGATGACCCCTGGGG-----------------------------------------------------------------------------------------------GCGGG------ i micMur3.chr7 C 0 I 552 s proCoq1.NW_012136747v1 5041499 119 - 6317780 TCACCCACAGCTCCAGCGACTTCTTGCCCAGACCGAAGAAGCGCAGAGTGGACAAGGAGAAGCGCCGCTGCTCGCGCCATGCAGGACCGTAGCGCGCCATGATCACCCCTGGGG-----------------------------------------------------------------------------------------------GCGGG------ i proCoq1.NW_012136747v1 C 0 I 23559 s otoGar3.GL873526 36275776 118 - 42659167 TCACCCACTGCTCCAGAGACTTCTTGCCCAGACCGAAGAGGCGCAGAGTGGACACGGAGAAGCGCCGCTGCTCGCGCCACGCGGGGCCGTAGCGGGCCACGATCACCCCT-GCG-----------------------------------------------------------------------------------------------CCGGG------ i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792752 111 + 104043685 TCACCCACTGCTCCAGTGATTTCTTGCCCAGGCCGAAGTCACGCAGGGTAGACACAGAAAATCGCCGCTGCTCTCGCCACTCGGGCCCGTAAGGTGCAAGGATCACACCTG------------------------------------------------------------------------------------------------------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46074564 116 - 69331447 ---------GCTCCAGGGACTTCTTGCCCAGGCCGAAGTTGCGCAGGGTGGACAGCGAGAAGCGCCGCTGCTCGCGCCACGCACGCCCGTAGCGCGCCAGGAACAACCCTGggg-----------------------------------------------------------------------------------------------gcgggcgaggg i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I a score=582934.000000 s hg38.chr22_GL383582v2_alt 62703 63 + 162811 -------ACGGACACAT----------GGGCGTGGTCATGGAGGC-CTTGGCCC------------------------------------CGCCCTCCGCCGCCCACTCCAACCCTG s panTro5.chr22 28843049 63 + 37823149 -------ACGGACACAT----------GGGCGTGGTCATGGAGGC-CTTGGCCC------------------------------------CGCCCTCCGCCGCCCACTCCAACCCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117693 63 + 50109623 -------ACGGACACAT----------GGGCGTGGTCATGGAGGC-CTTGGCCC------------------------------------CGCCCTCCGCCGCCCACTCCAACCCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139680 63 + 4464012 -------ACGGACACGT----------GGGCGTTGCCATGAAGGC-CTTGGTCC------------------------------------CACCCTCCGCCACCCACTCCAACCCTG i gorGor5.CYUI01015375v1 C 0 I 21 s nomLeu3.chr7b 106637215 63 - 115148730 -------ACGGACACAT----------GGGCGTGGTCATGGAGGC-CTTGGCCC------------------------------------CGCCCTCTGCCGCCCACTCTAACCCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251579 63 + 92844088 -------ATGGACACGT----------GGGCATGGCCATGAAGGC-CTTGGCCC------------------------------------CGCCCTCCACCACCCACTACAACCCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596519 63 - 96509753 -------ATGGACACGT----------GGGCGTGGCCATGAAGGC-CTTGGCCC------------------------------------CGCCCTCCACCACCCACTACAACCCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088559 63 - 13098629 -------ATGGACACGT----------GGGCGTGGCCATGAAGGC-CTTGGCCC------------------------------------CGCCCTCCACCACCCACTACAACCCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4055088 63 - 4483953 -------ATGGACACGT----------GGGCGTGGCCATGAAGGC-CTTGGCCC------------------------------------CGCCCTCCACCGACCACTACAACCCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685900 63 + 33263144 -------ATGGACACGT----------GGGCGTGGCCATGAAGGC-CTTGGCCC------------------------------------CGCCCTCCACCGCCCACTACAACCCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934064 63 - 14338769 -------ACAGGCAGGT----------GCGAGTGGCCATGAAGTC-CTTGGCCC------------------------------------CACCCTCTGCCACCCACTCCAACCCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 903311 63 + 1946073 -------ATGCACACGT----------GGGCGTGGCCATGAAGGC-CTTGGCCC------------------------------------CGCCCTCCACCGCCCACTACAACCCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932378 61 - 2117846 -------ATGGACGTGT------------GTGTGGCCATGAAGGC-CTCGGCCC------------------------------------CACTCTCTGCTGCCTACTCCAACCCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847445 63 - 16357246 -------ATGAACGCGT----------GGGCGTGGCCATGAAGGC-CTTGGCCC------------------------------------CGCTCTCTGCCGCCCACTCCAACCCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328249 63 - 1807191 -------ATGGACGCGT----------GGGCATGGCCATGAAGGC-CTTGGCCT------------------------------------CACTCTCCGCCGCCCACTCCAACCCTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7545 63 + 5963231 -------ATGGACGCGT----------GGGCGTGGCCATGAAGGC-CTTGGCCC------------------------------------CACTCTCCGCCGCCCACTCCAAACCTG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36275894 98 - 42659167 -------ACGG-CGTGT----------GGGCGTGGCCAGGCAGCC-CTGGGCCCGCCCACTCGGTGTCTTCTGTCCTGGATGTCTTGGTGGGCCGTCGGCCGCACACTCTGAGTCTG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792863 38 + 104043685 --------CAGACATAT----------CTGTGTGTAACTGAGGGCACCTAGCTA------------------------------------TG------------------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46074680 73 - 69331447 gcgggccgtgggcggggctccgcggcggggcggggcCGTGGGGCT-CCCCCCCC------------------------------------CCCCCCCCGCTCCCCACCGC------- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I a score=105179.000000 s hg38.chr22_GL383582v2_alt 62766 18 + 162811 TGCTTTTCCTGGTCTCCC s panTro5.chr22 28843112 18 + 37823149 TGCTTTTCCTGGTCTCCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117756 18 + 50109623 GGCTTTTCCTGGTCTCCC i panPan2.chr22 C 0 C 0 s nomLeu3.chr7b 106637278 18 - 115148730 TGCTTTTCCTGGTCTCCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251642 18 + 92844088 TGGTTTTCCTGGTCTTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596582 18 - 96509753 TGGTTTTCCTGGTCTTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088622 18 - 13098629 TGGTTTTCCTGGTCTTCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4055151 18 - 4483953 TGGTTTTCCTGGTCTTCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685963 18 + 33263144 TGGTTTTCCTGGTCTTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934127 18 - 14338769 CGCTACCCAAGGTCTCCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 903374 18 + 1946073 TGGTTTTCCTGGTCTTCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932439 18 - 2117846 CACTCCCCTTGGTCTCCG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847508 18 - 16357246 CGCTCCCCTTGGTCTCCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328312 18 - 1807191 CACTCCCCTTGGTCTCCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7608 18 + 5963231 CGCTCGCCTTGGTCTCCG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36275992 18 - 42659167 TCCTCCCCCCTGTCCCGC i otoGar3.GL873526 C 0 I 2 s mm10.chr15 82792901 18 + 104043685 TGGTCTCTTCTGTTCCCA i mm10.chr15 C 0 C 0 s canFam3.chr10 46074753 11 - 69331447 -----CACTAAATCGC-- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I e gorGor5.CYUI01015375v1 3139743 21 + 4464012 I a score=75568.000000 s hg38.chr22_GL383582v2_alt 62784 10 + 162811 GCAGTCCCTG s panTro5.chr22 28843130 10 + 37823149 GCAGTCCCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117774 10 + 50109623 GCAGTCCCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139764 10 + 4464012 GCAGTCCCCG i gorGor5.CYUI01015375v1 I 21 C 0 s nomLeu3.chr7b 106637296 10 - 115148730 GCAGTCCCTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251660 10 + 92844088 GTGGTCCCTG i rheMac8.chr10 C 0 I 15 s macFas5.chr10 87596600 10 - 96509753 GTGGTCCCTG i macFas5.chr10 C 0 I 9 s macNem1.NW_012012688v1 7088640 10 - 13098629 GTGGTCCCTG i macNem1.NW_012012688v1 C 0 I 9 s cerAty1.NW_011999588v1 4055169 10 - 4483953 GTGGTCCCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24685981 10 + 33263144 GTGGTCCCTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934145 10 - 14338769 GCAGCCCCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 903392 10 + 1946073 GCGGTCCCTT i colAng1.NW_012115588v1 C 0 I 3 s calJac3.chrUn_GL286373 1932457 10 - 2117846 GCAGTTCCTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847526 10 - 16357246 GCAGTCCCTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328330 10 - 1807191 GCAGTCCCTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7626 10 + 5963231 GCAGCCCCTC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276012 10 - 42659167 TTGGCTTGTT i otoGar3.GL873526 I 2 C 0 s mm10.chr15 82792919 10 + 104043685 ACATTTCTCT i mm10.chr15 C 0 I 3 s canFam3.chr10 46074764 10 - 69331447 GCCCACTCTG i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I a score=-14329.000000 s hg38.chr22_GL383582v2_alt 62794 6 + 162811 --GCCCTG s panTro5.chr22 28843140 6 + 37823149 --GCCCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117784 6 + 50109623 --GCCCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139774 6 + 4464012 --GCCCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637306 6 - 115148730 --GCCCTG i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87596619 4 - 96509753 --GCTG-- i macFas5.chr10 I 9 I 2 s macNem1.NW_012012688v1 7088659 4 - 13098629 --GCTG-- i macNem1.NW_012012688v1 I 9 I 2 s cerAty1.NW_011999588v1 4055179 4 - 4483953 --GCTG-- i cerAty1.NW_011999588v1 C 0 I 2 s chlSab2.chr19 24685991 4 + 33263144 --GCTG-- i chlSab2.chr19 C 0 I 2 s manLeu1.NW_012102031v1 13934155 4 - 14338769 --GCCT-- i manLeu1.NW_012102031v1 C 0 I 2 s colAng1.NW_012115588v1 903405 3 + 1946073 --GCA--- i colAng1.NW_012115588v1 I 3 C 0 s calJac3.chrUn_GL286373 1932467 6 - 2117846 --GCCCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847536 6 - 16357246 --GCCCCG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328340 6 - 1807191 --GCCCCG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7636 6 + 5963231 --GCCCCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276022 6 - 42659167 --ACCTTG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792932 1 + 104043685 --G----- i mm10.chr15 I 3 C 0 s canFam3.chr10 46074774 7 - 69331447 ACACCCT- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I e rheMac8.chr10 84251670 15 + 92844088 I a score=214494.000000 s hg38.chr22_GL383582v2_alt 62800 24 + 162811 TCCAGCTGGGCA--CAGG-----GCCTGCTC s panTro5.chr22 28843146 24 + 37823149 TCCAGCTGGGCA--CAGG-----GCCTGCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117790 24 + 50109623 TCCAGCTGGGCA--CAGG-----GCCTGCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139780 24 + 4464012 TCCAGCTGGGCA--CAGG-----GCCTGCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637312 24 - 115148730 TCCAACTGGGCA--CAGG-----GCCTGCTC i nomLeu3.chr7b C 0 I 1 s rheMac8.chr10 84251685 24 + 92844088 TCCAGCAGGGCA--CCGG-----GCCTGCTC i rheMac8.chr10 I 15 C 0 s macFas5.chr10 87596625 24 - 96509753 TCCAGCAGGGCA--CCGG-----GCCTGCTC i macFas5.chr10 I 2 C 0 s macNem1.NW_012012688v1 7088665 24 - 13098629 TCCAGCAGGGCA--CCGG-----GCCTGCTC i macNem1.NW_012012688v1 I 2 C 0 s cerAty1.NW_011999588v1 4055185 24 - 4483953 TCCAGCAGGGCA--CCGG-----GCCTGCTC i cerAty1.NW_011999588v1 I 2 C 0 s chlSab2.chr19 24685997 24 + 33263144 TCCAGCAGGGCA--CTGG-----GCCTGCTC i chlSab2.chr19 I 2 C 0 s manLeu1.NW_012102031v1 13934161 24 - 14338769 TCCAGCTGGGCA--CAGG-----GCCCACTC i manLeu1.NW_012102031v1 I 2 I 16038 s colAng1.NW_012115588v1 903408 24 + 1946073 TCCAGCAGAGCA--CCGG-----CCCTGCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932473 24 - 2117846 TCCAGCTGGGCA--CAGG-----GTCCACTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847542 24 - 16357246 TCCAGCTGGGCA--CAGG-----GTCCACTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328346 24 - 1807191 TCCAGCTGGGCA--CAGG-----GTCCACTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7642 24 + 5963231 TCCAGCTGGGCA--CAGG-----GTCCACTC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276028 11 - 42659167 TTC--------------------GCCTGCCG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792933 26 + 104043685 TCAGTCTTAGCAGTCAGT-----GCCCAGCA i mm10.chr15 C 0 I 1 s canFam3.chr10 46074781 27 - 69331447 TCCCGCCGGGGA--CAGGTCTCTGCCCGC-- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I a score=347655.000000 s hg38.chr22_GL383582v2_alt 62824 33 + 162811 TTTGCTCACTCACCTTGCTTG-------GGTCTTGGCCCC s panTro5.chr22 28843170 33 + 37823149 TTTGCTCACTCACCTTGCTTG-------GGTCTTGGCCCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117814 33 + 50109623 TTTGCTCACTCACCTTGCTTG-------GGTCTTGGCCCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139804 33 + 4464012 TTTGCTCACCCACCTTGCTTG-------GGTCTTGGCCCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637337 33 - 115148730 TTTGCTCACCCACCTTGCTTG-------GGTCTTGGCCCC i nomLeu3.chr7b I 1 C 0 s rheMac8.chr10 84251709 33 + 92844088 TTTGCTCACCTACCTTGCTTG-------GGTCTTGGCCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596649 33 - 96509753 TTTGCTCACCTACTTTGCTTG-------GGTCTTGGCCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088689 33 - 13098629 TTTGCTCACCTACCTTGCTTG-------GGTCTTGGCCCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4055209 33 - 4483953 TTTGCTCACCTACCTTGCTTG-------GGTCTTGGCCCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686021 33 + 33263144 TTTGCTCACCTACCTTGCTTG-------GGTCTTGGCCCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13950223 33 - 14338769 TTTGCTCACCTACCTTGCTTG-------GGTCTTGGCCCC i manLeu1.NW_012102031v1 I 16038 C 0 s colAng1.NW_012115588v1 903432 33 + 1946073 TTTGCTCACCTACCTTGCTTG-------GGTCTTGGCCCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932497 33 - 2117846 TTTGCTCACCCACTTTGCTCA-------AGTCTTGTCCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847566 33 - 16357246 TTTGCTCACCCACCTTGCTCG-------AGTCTTGTCCCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328370 33 - 1807191 TTTGCTCACCCACCTTGCTCG-------AGTCTTGTCCCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7666 33 + 5963231 TCTGCTCACCCACCTTGCTCA-------AGTCTTGTCCCC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276039 27 - 42659167 TCTGTCTTC------TGCTTG-------GGCCTTGTGGCC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792960 29 + 104043685 TTTTCTAGCACATATTG-----------GCACCTTGCATT i mm10.chr15 I 1 C 0 s canFam3.chr10 46074808 40 - 69331447 GTTGCTCGCCGGCGCTTCTCGGCCGGCAGGTGCTGGCCCC i canFam3.chr10 C 0 I 209 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I a score=682913.000000 s hg38.chr22_GL383582v2_alt 62857 86 + 162811 ACCTTGGCTCTTCCGACCCTGACTGC----CTTTCCACTCAGGGAAGATCCCG------CCCGTCCCGCCCCGCCC----------ATACTGAGCCCACAGCAGAG s panTro5.chr22 28843203 91 + 37823149 ACCTTGGCTCTTCCGACCCTGACTGC----CTTTCCACTCAGGGAAGATcccg------cccgtcccgccccgccc-----cgcccATACTGAGCCCACAGCAGAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117847 86 + 50109623 ACCTTGGCTCTTCCGACCCTGACTGC----CTTTCCACTCAGGGAAGATCCCG------CCCGTCCCGCCCCGCCC----------ATACTGAGCCCACAGCAGAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139837 96 + 4464012 ACCTTGGCTCTTCCGACCCTGACCGC----CTTTCCACTCAGGGAAGATcccg------cccgtcccgtcccgccccgccccgcccATACTGAGCCCGCAGTAGAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637370 91 - 115148730 ACCTTGGTTCTTCCGACCCTGACCGC----CTTTCCACTCAGGGAAGATcccg------cccgtcccgccccgtcc-----cgcccATCCTGAGCCTGCAGCAGAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251742 61 + 92844088 ACCTTGGCTCTTCCGACCCTGACTGC----CTTTCCACTCAGGGAAGATCCCG------CCCGCCCCGCCC----------------------------------- i rheMac8.chr10 C 0 M 16 s macFas5.chr10 87596682 86 - 96509753 ACCTTGGCTCTTCCGACCCTGACTGC----CTTTCCACTCAGGGAAGATCCCG------CCCGCCCCGCCCTGCCC----------ATATTGAGCCCGCAGCACAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088722 86 - 13098629 ATCTTGGCTCTTCCGACCCTGACTGC----CTTTCCACTCAGGGAAGATCCCG------CCCGCCCCGCCCTGCCC----------ATATTGAGCCCGCAGCACAG i macNem1.NW_012012688v1 C 0 I 44 s cerAty1.NW_011999588v1 4055242 86 - 4483953 ACCTTGGCTCTTCCGACCCTGACTGC----CTTTCCACTCAGGGAAGATCCCG------CCCGCCCCGCCCTGCCC----------ATATTGAGCCCGCAGCACAG i cerAty1.NW_011999588v1 C 0 T 15204 s chlSab2.chr19 24686054 77 + 33263144 ACCTTGGCTCTTCCGACCCTGACTGC----CTTTCCACTCAGGGAAGAT---------------CCCGCCCTGCCC----------ATATTGAGCCCGCAGCACAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13950256 86 - 14338769 ACCTTGGCTCTTCCGACCCTGACTGC----CTTTCCACTCAGGGAAGATCCCG------CCCGCCCCGCCCTGCCC----------ATATTGAGCCCGCAGCACAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 903465 81 + 1946073 ACCTTGGCTCTTCCGACCCTGACTGC----CTTTCCACTCAGGGAAGATCCCG------CCCGCCCCGCCC---------------ATATTGAGCCCGCAGCACAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932530 82 - 2117846 ATCTCGGCTCTGCCCACCCTGA--------CTTTCCACTGAGGAAAGATCCCG------CTGGCCCAGCCAGGTCC----------TCACTGAGCCGGCAGCACAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847599 85 - 16357246 ACCTCGGCTCTGCCCACCCTGACTGC----CTTTCCACTCAGGGAAGATCCCG------CTGGCTCTCCCGGG-CC----------ACACTGAGCTGGCAGCACAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328403 86 - 1807191 ACCTCGGCTCTGCCCATCCTGACTGC----CTTTCCACTCAGGGAAGATCCCG------CTGGCCCGGCCCAGGCC----------ACACTGAGCCGGCAGCACAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7699 90 + 5963231 ATCTCGGCTCTGCCCACCCTGACTGCCTTTCTTTCCACTCAGGGAAGATCCTG------CTGGCCCGACTCGGGCC----------ACACTGAGCCGGTGGCACAG i aotNan1.NW_018512383v1 C 0 I 6 s otoGar3.GL873526 36276066 84 - 42659167 CACCCACCTCTGCCCACCCTGACCGC----CTTTCCACTCAGGGATGATGCCGGCTGGCCCTGCCCCGCCCCGCCC----------TCACCGAGCCCG-------- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82792989 27 + 104043685 CCTTAGGCTC-------------CAC----CCTCCACCCCAGTG-------------------------------------------------------------- i mm10.chr15 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46074848 209 - 69331447 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I a score=-1961.000000 s hg38.chr22_GL383582v2_alt 62943 9 + 162811 TCCATCCCG s panTro5.chr22 28843294 9 + 37823149 TCCATCCCG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117933 9 + 50109623 TCCATCCCG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139933 9 + 4464012 TCCATCCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637461 9 - 115148730 GCCATCCCG i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87596768 3 - 96509753 ------CTG i macFas5.chr10 C 0 C 0 s chlSab2.chr19 24686131 3 + 33263144 ------CTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13950342 3 - 14338769 ------CTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 903546 3 + 1946073 ------CTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932612 5 - 2117846 ----GCGCG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847684 5 - 16357246 ----GCGCG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328489 5 - 1807191 ----GCATG i cebCap1.NW_016107750v1 C 0 C 0 s mm10.chr15 82793016 8 + 104043685 TTTTTCCC- i mm10.chr15 C 0 C 0 e aotNan1.NW_018512383v1 7789 6 + 5963231 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46074848 209 - 69331447 I e otoGar3.GL873526 36276150 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I e cerAty1.NW_011999588v1 4055328 15204 - 4483953 T e macNem1.NW_012012688v1 7088808 44 - 13098629 I e rheMac8.chr10 84251803 16 + 92844088 M a score=3015.000000 s hg38.chr22_GL383582v2_alt 62952 2 + 162811 GC s panTro5.chr22 28843303 2 + 37823149 GC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117942 2 + 50109623 GC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139942 2 + 4464012 GC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637470 2 - 115148730 GC i nomLeu3.chr7b C 0 C 0 s cerAty1.NW_011999588v1 4040124 2 - 4483953 CC i cerAty1.NW_011999588v1 T 15204 C 0 s calJac3.chrUn_GL286373 1932617 2 - 2117846 GT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847689 2 - 16357246 GT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328494 2 - 1807191 GT i cebCap1.NW_016107750v1 C 0 C 0 e aotNan1.NW_018512383v1 7789 6 + 5963231 I e mm10.chr15 82793024 0 + 104043685 C e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46074848 209 - 69331447 I e otoGar3.GL873526 36276150 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I e colAng1.NW_012115588v1 903549 0 + 1946073 C e manLeu1.NW_012102031v1 13950345 0 - 14338769 C e chlSab2.chr19 24686134 0 + 33263144 C e macNem1.NW_012012688v1 7088808 44 - 13098629 I e macFas5.chr10 87596771 0 - 96509753 C e rheMac8.chr10 84251803 16 + 92844088 M a score=174025.000000 s hg38.chr22_GL383582v2_alt 62954 31 + 162811 TTCTAGACACCCGCTTCCAGCTGGGAAAGGC s panTro5.chr22 28843305 31 + 37823149 TTCTAGACACCCGCTTCCAGCTGGGAAAGGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117944 31 + 50109623 TTCTAGACACCCGCTTCCAGCTGGGAAAGGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139944 31 + 4464012 TCCTAGACACCCGCTTCCAGCTGGGAAGGGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637472 31 - 115148730 TTCTAGACACCCGCTTCCAGCTGGGAAAGGC i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87596771 27 - 96509753 ----GGACACGGGCTTCCAGTTGGGAAAGGC i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4040126 31 - 4483953 TCTTCGACACCTGATTCCAGCTGGGAAAGGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686134 27 + 33263144 ----GGACACCGGCTTTCAGTTGGGAAAGGT i chlSab2.chr19 C 0 I 13 s manLeu1.NW_012102031v1 13950345 27 - 14338769 ----GGACACCGGCTTCCAGTTGGGAAAGGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 903549 27 + 1946073 ----GGACACCCGCTTCCAGTTGGGAAAGGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932619 31 - 2117846 CCCCGGATACCTGCCTCCAGCTGGGAAACGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847691 30 - 16357246 -CCCGGATACCTGCCTCCGGCTGGGAAAGGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328496 31 - 1807191 CCCCGGACACCTGCCTCCAGCTGGGAAAGGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7795 31 + 5963231 TCCCGGACACCTGCCTCCAGCTGGAAAAGGT i aotNan1.NW_018512383v1 I 6 C 0 s otoGar3.GL873526 36276150 23 - 42659167 --TTTGCCACTAGCGGCC--CTTGGAC---- i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82793024 0 + 104043685 C e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46074848 209 - 69331447 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I e macNem1.NW_012012688v1 7088808 44 - 13098629 I e rheMac8.chr10 84251803 16 + 92844088 M a score=47930.000000 s hg38.chr22_GL383582v2_alt 62985 13 + 162811 GCCAGCTCCGCCC s panTro5.chr22 28843336 13 + 37823149 GCCAGCTCCGCCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117975 13 + 50109623 GCCAGCTCCGCCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139975 13 + 4464012 GCCGGCTCCGCCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637503 13 - 115148730 GCCGGCTCCGCCC i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87596798 13 - 96509753 TCGGGCTGCTCTT i macFas5.chr10 C 0 I 1 s cerAty1.NW_011999588v1 4040157 13 - 4483953 GCCATCCTCACCC i cerAty1.NW_011999588v1 C 0 I 15202 s manLeu1.NW_012102031v1 13950372 13 - 14338769 TCGGGCTGCTCTT i manLeu1.NW_012102031v1 C 0 I 1 s colAng1.NW_012115588v1 903576 13 + 1946073 GCCAGCTGCTCTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932650 13 - 2117846 ACCGGCCTCGCCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847721 13 - 16357246 GCGGGCCTCGCCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328527 13 - 1807191 GCGGGCCTCGCCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7826 13 + 5963231 GCCGGCCTCGCCC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276173 12 - 42659167 TCCACCTCCGCC- i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82793024 0 + 104043685 C e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46074848 209 - 69331447 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I e chlSab2.chr19 24686161 13 + 33263144 I e macNem1.NW_012012688v1 7088808 44 - 13098629 I e rheMac8.chr10 84251803 16 + 92844088 M a score=843365.000000 s hg38.chr22_GL383582v2_alt 62998 123 + 162811 ACCCGGTTCCTGGTGGGTCTCGGCAGTTGCCCCGCCCACT---CACAAGCCCCTCTTCCTCCCGCCCACAGACTCGCACCTCCCCAATGGAAGTGGTTTCCTGGCTCG-CTGTCCCCAACCCACTCA s panTro5.chr22 28843349 123 + 37823149 ACCCGGTTCCTGGTGGGTCTCGGCAGTTGCCCCGCCCACT---CACAAGCCCCTCCTCCTCCCGCCCACAGACTCGCACCTCCCCAGTGGAAGTGGTTTCCTGGCTCG-CTGTCCCCAACCCACTCG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41117988 123 + 50109623 ACCCGGTTCCTGGTGGGTCTCGGCAGTTGCCCCGCCCACT---CACAAGCCCCTCCTCCTCCCGCCCACAGACTCGCACCTCCCCAGTGGAAGTGGTTTCCTGGCTCG-CTGTCCCCAACCCACTCG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3139988 121 + 4464012 ACCCGGTTCCTGGCGGGTCTCGGCAGTTGCCCCGCCCACT---CACAAGCCCCTCCTCCTCCC-CCCACAGACTCGCACCTCCCGAGTGGAAGTGGTTTCCTGGCTC--CTGTCCCCAACCCACTCG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637516 123 - 115148730 ACCCGGTTCCTGGCGGGTCTTGGCAGTTGCCCCGCCCACT---CATAAGCCCCTCTTCCTCCTGCCCACACACTCGCACCTCCCCAGTGGAAGTGGTTTCCTGGCTCG-CTGTCCCCAACCCACTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251819 126 + 92844088 NNNNGGATCCTGGCAGGTCTGTGCAGTTGCCCCACCCACTCACCACAAGCCCCGCCTCCTCCCGCCCACACACTCGCACCTCCCCAGTGGAAGTGGTTTCCCTGTCCG-CTGTCCCCAACCCACTCT i rheMac8.chr10 M 16 C 0 s macFas5.chr10 87596812 126 - 96509753 ACCAGGATCCTGGCAGGTCTGTGCAGTTGCCCCACCCACTCACCACAAGCCCCGCCTCCTCCCGCCCACACACTCGCACCTCCCCAGTGGAAGTGGTTTCCCGGTCCG-CTGTCCCCAACCCACTCT i macFas5.chr10 I 1 C 0 s macNem1.NW_012012688v1 7088852 126 - 13098629 ACCAGGATCCTGGCAGGTCTGTGCAGTTGCCCCACCCACTCACCACAAGCCCCGCCTCCTCCCGCCCACACACTCGCACCTCCCCAGTGGAAGTGGTTTCCCGGTCCG-CTGTCCCCAACCCACTCT i macNem1.NW_012012688v1 I 44 C 0 s cerAty1.NW_011999588v1 4055372 126 - 4483953 ACCAGGATCCTGGCAGGTCTGTGCAGTTGCCCCACCCACTCACCACAAGCCCCGCCTCCTCCCGCCCACACACTCGCACCTCCCCAGTGGAAGTGGTTTCCCGGTCCG-CTGTCCCCAGCCTACTCT i cerAty1.NW_011999588v1 I 15202 C 0 s chlSab2.chr19 24686174 123 + 33263144 ACCAGGATCCTGGCAGGTCTGTGCAGTTGCCCCACCCACT---CACAAGCCCCGCCTCCTCCCGCCCACACACTCGCACCTCCCCCGTGGAAGTGGTTTCCCGGTCCG-CTGTCCCCAACCCACTCT i chlSab2.chr19 I 13 C 0 s manLeu1.NW_012102031v1 13950386 126 - 14338769 ACCAGGATCCTGGCAGGTCTGTGCAGTTGCCCCACCCACTCACCACAAGCCCCGCCTCCTCCCGCCCACACACTCGCACCTCCCCAGTGGAAGTGGTTTCCCGGTCCG-CGGTCCCCAACCCACTCT i manLeu1.NW_012102031v1 I 1 C 0 s colAng1.NW_012115588v1 903589 123 + 1946073 ACCAGGATCCTGGCAGGTCTGTGCAGTTGCTCCACCCACT---CACAAGCCCCGCCTCCTCCCACCCACACACTCGCACCTCCCCAGTGGAAGCGGTTTCCTGGTCTG-CTGTCCCCAACCCACTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932663 96 - 2117846 AGCTGGCTCTTGTTAGGTCTAG--------------------------GCCCCGTC----CCCACCCACAAGCTCACACCTCCCCAGAGCAGGTGGTGTCGTGGCCCG-CTGTCCCCGGCCCACTTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847734 120 - 16357246 ACCTGGCTCCTGTTGGGTCTAG-CCATGGCCCCTCCTACTCGCCACAAGGTCCGTC----CCCGACCACACGCTCGCACCTCCCCAGAGCAGGTGGTGTCGTGGCCCG-CTGTCCCCGG-CCACTCG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328540 122 - 1807191 ACCTGGCTCCTGTTGGGTCTAGGTCGTGGCCCCGCCTACTCACCACAAGCCCCGTC----CCCGCCCACACGCTCGCACCTCCCCAGAGCAGGTGGTGTCGTGGCCCG-CTGTCCCCGGCCTACTCG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7839 96 + 5963231 ACCTGGCTCCTGCTGGGTCTAG--------------------------GCCCCGTC----CCCGCCCACACGCTCGCACCTCCCCAGAGCAGGTGGTGTCGTGGCCCG-CTGTCCCCGGCCCACTCG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276185 29 - 42659167 --------------------------------------------------CTCGGC----CCCGCCC--------------------------------------CTG-CTGCTCTCCGCCC----- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82793024 52 + 104043685 --------------------------TTGCCTTG--------------------------CCGGACCACAT-------CATCTCCATTA-------------GGTCTGTCTATCTTCTGCTCAC--- i mm10.chr15 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46074848 209 - 69331447 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I a score=1109810.000000 s hg38.chr22_GL383582v2_alt 63121 108 + 162811 CTGGCC-------------------CACAACCCCGCGCCCTCTCAGCCCAGCTTGGGCTACGGTCACCGCCCACCCAGGACCCACGGAAACGCAGTCTCTGTCCCCCACC--GCCG---CTTGCCTTGGGAG s panTro5.chr22 28843472 127 + 37823149 CTGGCCTTTCTGTGTGTCCCAAGTCCACAACCCCGCGCCCTCTCAGCCCAGCTTGTGCTACGGTCACCGCCCACCCAGGACCCACGGAAACGCAGTCTCTGTCCCCCACC--GCCG---CTTGCCTTGGGAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118111 127 + 50109623 CTGGCCTTTCTGTGTGTCCCAAGTCCACAACCCCGCGCCCTCTCAGCCCAGCTTGGGCTACGGTCACCGCCCACCCAGGACCCACGGAAACGCAGTCTCTGTCCCCCACC--GCCG---CTTGCCTTGGGAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140109 127 + 4464012 CTGGCCTTTCTGTGTGTCCCAAGTCCACGACCCCGTGCCCTCTCGGCCCAGCTTGGGCTACGGTCACCGCCCACCCAGGACCCACGGAAACGCAGTCTCTGTCCCCCACC--GCCG---CTTGCCTTGGGAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637639 127 - 115148730 CTGGCCTTTCTGTGTGTCCCAAGTCCACGACCCCGCGCCCTCTCGGCCCAGCTTGGGCTACGGTCACCGCCCACCCGGGACCCACGGAAACGAGGTCTCTGTCCCCCACC--GCCG---CTTGCCTTGGGAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84251945 127 + 92844088 CTGGCCTTTTTCTGTGTCCCAACTCCACGACCCCGCGCCCTCTCGGCACAGCTTGGGCTACGGTCACCGCCCACTCAGGGCCCACGGAAACGAGGTGTCTGTCCCCCACC--GCCG---CTTGCCTTGGGAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87596938 127 - 96509753 CTGGCCTTTTTCTGTGTCCCAACTCCACGACCCCGCGCCCTCTCGGCACAGCTTGGGCTACGGTCACCGCCCACTCAGGGCCCACGGAAACGAGGTGTCTGTCCCCCACC--GCCG---CTTGCCTTGGGAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7088978 127 - 13098629 CTGGCCTTTTTCTGTGTCCCAACTCCACGACCCCGCGCCCTCTCGGCACAGCTTGGGCTACGGTCACCGCCCACTCAGGGCCCACGGAAACGAGGTGTCTGTCCCCCACC--GCCG---CTTGCCTTGGGAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4055498 127 - 4483953 CTGGCCTTTTTCTGTGTCCCAACTCCACGACCCCGCGCCCTCTCGGCCCAGCTTGGGCTACGGTCACCGCCCACTCAGGGCCCACGGAAACGAGGTGTCTGTCCCCCACC--GCCG---CTTGCCTTGGGAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686297 127 + 33263144 CTGGGCTTTTTCTGTGTCCCAACTCCACGACCCCGCGCCCTCTCGGCCCAGCTTGGGCTACGGTCACCGCCCACTCAGGGCCCACGGAAACGAGGTGTCTGTCCCCCACC--GCCG---CTTGCCTTGGGAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13950512 127 - 14338769 CTGGCCTTTTTCTGTGTCCCAACTCCACGACCCCGCGCCCTCTCGGCCCAGCTTGGGCTACGGTCACCGCCCACTCAGGGCCCACGGAAACGAGGTGTCTGTACCCCACC--GCCG---CTTGCCTTGGGAG i manLeu1.NW_012102031v1 C 0 T 16020 s colAng1.NW_012115588v1 903712 125 + 1946073 CTGGCC--TTTCTGTGTCCCAACTCCACGACCTCGCGCCCTCTCGGCCCAGCTTGGGCTACGGTCACCGCCCACTCAGGGCCCACGGAAACGAGGTGTCTGTCCCCCACC--GCCG---CTTGCCTTGGGAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932759 124 - 2117846 CTGGCCTTTCTCAGTGTCCCACGTCCACGACTGTGCGCTCTCTTGGCCCAGCTCAGGCTCCGGTCACCACCCACCCGGGTCCCATGGAAAC--AGTCTCTGT-CCCCACC--GCCG---CTTGCCTTGGGAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847854 124 - 16357246 CTGGCCTTTCTCAGTGTCCCACGTCCACGAGCGCGCGCCCTCTCGGCCCAGCTCGGGCTCCAGTCACCACCCACCCGGATCCCGCGGAAAC--AGTCTCCGT-CCCCACC--GCTG---CTTGCCTTGGGAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328662 124 - 1807191 CTGGCCTTTCTCAGTGTCCCACGTCCACGAACGCGCGCCCTCTCGGCCCAGATCGGGCTCCAGTCACCGCCCACCCGGGTCCCGCGGAAAC--AGACTCCGT-CCCCACC--GCCG---CTTGCCTTGGGAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 7935 124 + 5963231 CTGGCCTTTCTCAGTGTCCCACGTCCACGACCACACGCCCTCTCAGCCCAGCTCGGGCTCCGGTCACCGCCCACCCAGGCCCCGCGGAAAC--AGTCTCCGT-CCCCACC--GCCG---CTTGCCTTGGGAG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276214 56 - 42659167 -----------------------------------------CTCGG------TGGGGCT-------CCGCCCACGCGG-------------------TCTGCTCGCCGGCTGGACA---CTTACCTTCGGAG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82793076 57 + 104043685 -------------------------------------CCCTCTCAAGCC--------CTACTCTCCCTGCC---------------------------TTGC-CCCCACT--ATAGAGCTTTGCCTTTTGAT i mm10.chr15 C 0 C 0 s canFam3.chr10 46075057 55 - 69331447 CTGGCCCATC---------------------------CCCGCCAGGCCC----CGGGCTGCG-----------------------------------------CCCCTCC--CCCG---CTTGCCTTGGGAT i canFam3.chr10 I 209 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I a score=231215.000000 s hg38.chr22_GL383582v2_alt 63229 23 + 162811 CGCGGCCCGATGCCCAGGACCTG s panTro5.chr22 28843599 23 + 37823149 CGCGGCCCGACGCCCAGGACCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118238 23 + 50109623 CGCGGCCCGACGCCCAGGACCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140236 10 + 4464012 CA-------------AGGACCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637766 23 - 115148730 CGCGGCCCGATGCCCAGGACCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84252072 23 + 92844088 CGCGGCCCGATGCCCAGGACCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597065 23 - 96509753 CGCGGCCCGATGCCCAGGACCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089105 23 - 13098629 CGCGGCCCGATGCCCAGGACCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4055625 23 - 4483953 CGCGGCCCGATGCCCAGGACCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686424 23 + 33263144 CGCGGCCCGATGCCCAGGACCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934619 23 - 14338769 CGTGGCCCAAAACCCAGGACCTG i manLeu1.NW_012102031v1 T 16020 C 0 s colAng1.NW_012115588v1 903837 23 + 1946073 CGCGGCCCGATGCCCAGGACCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932883 23 - 2117846 CGCGGCCCAATGCCGAGGACCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8847978 23 - 16357246 CGCGGCCCGAAGCCCAGGACCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328786 23 - 1807191 CGCGGCCCGTAGCCCAGGACCTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 8059 23 + 5963231 CGTGGCCCGAAGCCCAGGACCTG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276270 23 - 42659167 CGAGGTCCAAAGCCCAGGTGCTC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82793133 16 + 104043685 -------TTGTGCCCATAGCCTA i mm10.chr15 C 0 I 7 s canFam3.chr10 46075112 23 - 69331447 TCTGGCCCCAAACCCAGGTGGTC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5699973 552 + 108171978 I a score=1047292.000000 s hg38.chr22_GL383582v2_alt 63252 72 + 162811 GTAGATGGGCGCAGGCGGGC-GGTCGGCGGTGTCCTCGCCGCAGGTCACCAGAGCCTCACGCACGGCCGCCAG s panTro5.chr22 28843622 72 + 37823149 GTAGATGGGCGCAGGCGGGC-GGTCGGCGGTGTCCTCGCCGCAGGTCACCAGCGCCTCACGCACGGCCGCCAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118261 72 + 50109623 GTAGATGGGCGCAGGCGGGC-GGTCGGCGGTGTCCTCGCCGCAGGTCACCAGCGCCTCACGCACGGCCGCCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140246 72 + 4464012 GGAGATGGGCGCAGGCGGGC-GGTCGGCGGTGTCCTTGCCGCAGGTCACCAGCGCCTCGCGCACGGCCGCCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637789 72 - 115148730 GTAGATGGGCGCAGGCGGGC-GGTCGGCGGTGTCCTCGCCGCAGGTCACCAGCGCCTCGCGCACAGCCGCCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84252095 72 + 92844088 GTAGATGGGCACAGGCGGGC-GGTCGGCAGTGTCCTCGCCGCAGGTCACCAGCGCCTCGCGCACGGCCGCCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597088 72 - 96509753 GTAGATGGGCACAGGCGGGC-GGTCGGCAGTGTCCTCGCCGCAGGTCACCAGCGCCTCGCGCACGGCCGCCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089128 72 - 13098629 GTAGATGGGCACAGGCGGGC-GGTCGGCAGTGTCCTCGCCGCAGGTCACCAGCGCCTCGCGCACGGCCGCCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4055648 73 - 4483953 GTAGATGGGCACAGGCGGGCGGGTCGGCAGTGTCCTCGCCGCAGGTCACCAGCGCCTCACGCACGGCCGCCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686447 72 + 33263144 GTAGATGGGCACAGGCGGGC-GGTCGGCAGTGTCCTCGCCGCAGGTCACCAGCGCCTCGCGCACGGCCGCCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13934642 72 - 14338769 GTTGATGGGCACAGGTGGGC-GGTCGGCTGTGTCCTCGCCGTAGGTCACCAGCGCCTCGCGCACGGCCGCCAG i manLeu1.NW_012102031v1 C 0 I 25970 s colAng1.NW_012115588v1 903860 72 + 1946073 GTAGATGGGCACAGGCGGGC-GGTCGGCTGTGTCCTCGCCGTAGGTCACCAGTGCCTCGCGCACGGCCGCCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932906 72 - 2117846 GTTGATGGGCGTAGGTGGGC-GGTCGGCGGTGTCCTCGCCCTGGGTCACCAGCGCCTCATGCACAGCCTCCAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848001 72 - 16357246 GTTGATGGGTGTAGGCGGTC-GGTCGGCGGTGTCCTCGCCGTGGGTCACCAGCGCCTCGCGCACAGCCTCCAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328809 72 - 1807191 GTAGATGGGCACAGGCGGCC-GATCGGCGGTGTCCTCGCCGCGGGTCACCAGCGCCTCACGCACGGCCTCCAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 8082 72 + 5963231 GTTGATGGGTGTAGGCGGGC-GGTCGGCGGTGTCCTCGCCGCGGGTCACCAGTGCCTCGCGCACAGCCTCCAG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5700525 72 + 108171978 GTAAATGGGCGAAGGCGGCC-GGTCGGCAGTGTCCTCGTTGTGCTTCACCAGGGCCTCGCGCACGGCCTCCAG i micMur3.chr7 I 552 C 0 s otoGar3.GL873526 36276293 72 - 42659167 ATAGACTGGTGCAGGCGGGC-GGTCCGCGGTGTCCTCGTTGTGCTTCACCAGCGCCTCGCGCACGGCCACCAG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82793156 72 + 104043685 ATAGATGGGCATTAGGGGGC-GGTCAGAAGTGTCCTCTCCATAGGTCACCAGCAGTTCCCGCACTGCCTTCAG i mm10.chr15 I 7 C 0 s canFam3.chr10 46075135 72 - 69331447 ATAGATCGGCATAGGTGGGC-GGTCGGCAGTGTCCTCGCTGCGGTGCACCAGGGCCTCGCGCACCGCCTCCAG i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I a score=1169144.000000 s hg38.chr22_GL383582v2_alt 63324 75 + 162811 CCCATTGAGCACGACCACCGGCATCCAGGCCAGCTGCAGGCTGAACACGTCCCCAAAGCGGTGCCGCAGCTGTAG s panTro5.chr22 28843694 75 + 37823149 CCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCAAAGCGGTGCTGCAGCTGTAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118333 75 + 50109623 CCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCAAAGCGGTGCTGCAGCTGTAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140318 74 + 4464012 CCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGT-CCCGAAGCGGTGCCGCAGCTGTAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637861 75 - 115148730 CCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGTGCCGCAGCTGCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84252167 75 + 92844088 CCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAGCTGTAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597160 75 - 96509753 CCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAGCTGTAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089200 75 - 13098629 CCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAGCTGTAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4055721 75 - 4483953 CCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGTGCCGCAACTGCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686519 75 + 33263144 CCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAGCTGTAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13960684 75 - 14338769 CCCGTTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAGCTGTAG i manLeu1.NW_012102031v1 I 25970 C 0 s colAng1.NW_012115588v1 903932 75 + 1946073 CCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAGCTGTAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1932978 75 - 2117846 CCCGTTGAGCACGACCACTGGAGTCCAGACCAGCTGCAGGCTGAACACATCCCCAAAGCGGCGCCGCAGCTTCAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848073 75 - 16357246 CCCGTTGAGCACGACCACTGGAGTCCAGAACAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAGCTGTAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328881 75 - 1807191 CCCGTTGAGTACGACCACCGGTGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCAAAGCGGCGCCGCAGCTGCAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 8154 75 + 5963231 CCCGTTGAGCACGACCACTGGAGTCCAGACCAGCTGCAGGCTGAACACGTCCCCAAAGCGGCGCCGCAGCTGCAG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5700597 75 + 108171978 CCCGTTGAGCACGACCGCCGGCGTCCAGGCCAGCTGCAGGCTGTACACGTCCCCGAAGCGGCGCCGCAGCTGTAG i micMur3.chr7 C 0 I 716 s otoGar3.GL873526 36276365 75 - 42659167 CCCGTTAAGTACGACCACCGGTGTCCAGCCCAGCTGCAGGCTGTACACGTCCCCAAAGCGGCGCTGCAGCTGCAG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82793228 75 + 104043685 TCCGTTGACCACAACCACGGGCTTCCAGGCCATCTGTAGGCTGAACACATTGCCATAGCGGTTTTGAAGCTGAAA i mm10.chr15 C 0 I 13 s canFam3.chr10 46075207 74 - 69331447 GCCGTTGAGCACGACCACCGGCGTCCAGGCCAGCTCCAGGCTGAACACGTTTCCGAAGCGGCCTTGCAGCTGCA- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I a score=214317.000000 s hg38.chr22_GL383582v2_alt 63399 41 + 162811 --------AGGGAGGGTCAGGGCCTCCGTTGGGTCAGGGCCTCCATCAG s panTro5.chr22 28843769 41 + 37823149 --------AGGGAGGGTCAGGGCCTCCGTTGGGTCAGGGCCTCCGTCAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118408 41 + 50109623 --------AGGGAGGGTCAGGGCCTCCGTTGGGTCAGGGCCTCCGTCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140392 24 + 4464012 --------AGGGAGGGTCAGGGCCTCCG-----------------TCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637936 24 - 115148730 --------AGGGAGGGTCAGGGTCTCCA-----------------TCAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84252242 24 + 92844088 --------AGGGAGGGTCAGGGCCTCCG-----------------TCAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597235 24 - 96509753 --------AGGGAGGGTCAGGGCCTCCG-----------------TCAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089275 24 - 13098629 --------AGGGAGGGTCAGGGCCTCCG-----------------TCAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4055796 24 - 4483953 --------AGGGAGAGTCAGGGCCTCCG-----------------TCAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686594 24 + 33263144 --------AGGGAGGGTCAGGGCCTCCG-----------------TCAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13960759 24 - 14338769 --------AGGGAGGGTCAGGGCCTCCG-----------------TCAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904007 24 + 1946073 --------AGGGTGGGTCAGGGCCTCCG-----------------TCAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933053 24 - 2117846 --------AGGGAGAGTTAGGGCCTCTG-----------------TCAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848148 24 - 16357246 --------AGGGAGGGTTACCGCCTCCG-----------------TCAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328956 24 - 1807191 --------AGGGAGGGTCAGGGCCTTCG-----------------TGAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 8229 24 + 5963231 --------AGGGAGGGTTAGGGCCTCCG-----------------TCAA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276440 12 - 42659167 --------CGGGAGGG-----------------------------TCAA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82793316 24 + 104043685 --------ATAGGAAGTAGAGGTTTCCA-----------------GCAG i mm10.chr15 I 13 I 630 s canFam3.chr10 46075281 26 - 69331447 GGCCACGGGTGGAGGGCGGGGG-----------------------TCAA i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I a score=694667.000000 s hg38.chr22_GL383582v2_alt 63440 71 + 162811 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAG--TCCTAT---TTGAACCTTAGACGACCCTCGGGGCTACCAGGAGT s panTro5.chr22 28843810 71 + 37823149 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAG--TCCTAT---TTGAACCTTGGACGACCCTCGGGGCTACCAGGAGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118449 71 + 50109623 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAG--TCCTAT---TTGAACCTTGGACGACCCTCGGGGCTACCAGGAGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140416 71 + 4464012 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAG--TCCTAT---TTGAACCTTGGACGACCCCCGGGGCTACCAGGAGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106637960 70 - 115148730 GCCA-GGTCCCCCCAGACTGCAGG-TCCTAG--TCCCAA---GTGAGCCTTGGGCGACCCCCGGGGCTACCAGGAGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84252266 71 + 92844088 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAG--TCCCAA---GTGAGCCTTGGGCGACCCCCGGGGCTACCAGGAGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597259 71 - 96509753 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAG--TCCCAA---GTGAGCCTTGGGCGACCCCCGGGGCTACCAGGAGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089299 71 - 13098629 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAG--TCCCAA---GTGAGCCTTGGGCGACCCCCGGGGCTACCAGGAGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4055820 71 - 4483953 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAG--TCCCAA---GTGAGCCTTGGGCGACCCCCAGGGCTACCAGGAGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686618 67 + 33263144 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAG--TCCCAA---GTGAGCCTTGGGCGACCCCCGGTGATATCAG---- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13960783 71 - 14338769 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAG--TCCCAA---GTGAGCCTTGGGCGACCCCCGGGGCTACCAGGAGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904031 71 + 1946073 GCCAGGGTCCCCCTAGACTGCAGG-TCCTAG--TCCCAA---GTGAGCCTTGGGCGACCCCCGGGGCTACCAGGAGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933077 69 - 2117846 GCCAGGGTC-CCCCAGCCTGCAGG-TCCTAG--TTCCAA---ATGGGCCTTGGGCGACCCCTGGGGCTTCCA-GAAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848172 70 - 16357246 GCCAGGTTC-CCCCAGCCTGCAGG-TCCTAG--TTCCAA---ATGAGCCTTGGGTGACCCCTGAGGCTTCCAGGAGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1328980 71 - 1807191 GCCAGGGTCTCCCCAGACTGCAGG-TCCTAG--TCCCAA---GTGAACCTTGGGCCAAGCTTGGGGCTACCAGGAGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 8253 70 + 5963231 GCCAGGGTC-CCCCAGCCTGCAGG-TCCTAG--CTCCAA---ATGAGCCTTAGGTGACCCCTGGGGCTTCCAGGAGT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276452 71 - 42659167 GATTGGGAT-CCCCACGCTGCCCT-TCCCAGGCTCCCTG---CACAAGCTTTCGTGACCC-TGAGACTGCCAGTAGA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46075307 75 - 69331447 GTCCGGTCCCCACCAGGCTGCAGGCCCCCAG--TCTCGGGGTGCTAGCCTTGGGGCACCCCTGGGGCCAGCAGCACT i canFam3.chr10 C 0 I 33 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I a score=392081.000000 s hg38.chr22_GL383582v2_alt 63511 47 + 162811 GAGCAGGTGGAAGGAGGAGACCCAGCCTCCCGATCCTGGGGCGGGGA s panTro5.chr22 28843881 47 + 37823149 GAGCAGGTGGAAGGAGGAGACCCAGCCTCCTGATCCTGGGGCGGGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118520 47 + 50109623 GAGCAGGTGGAAGGAGGAGACCCAGCCTCCTGATCCTGGGGCGGGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140487 47 + 4464012 GAGCAGGTGGAAGGAGGAGACCCAGCCTCCTGATCCTGGGGCGCGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638030 47 - 115148730 GAGCAGGTGGAAGGAGGAAACCTGGCCTCCTGATCCTGGGGCGGGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84252337 45 + 92844088 GAGCAGGTGCAAGGAGGAGACCCGGCCTCCTGATCCTGGGGCGTG-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597330 45 - 96509753 GAGCAGGTGCAAGGAGGAGACCCGGCCTCCTGATCCTGGGGCGTG-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089370 45 - 13098629 GAGCAGGTGCAAGGAGGAGACCCGGCCTCCTGATCCTGGGGCGTG-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4055891 45 - 4483953 GAGCAGGTGCAAGGAGGAGACCCGGCCTCCTGATCCTGGGGCGTG-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686685 45 + 33263144 GAGCAGGTGGAAGGAGGAGACCCAGCCTCCTGATCCTGGGGCGTG-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13960854 45 - 14338769 GAGCAGGTGCAAGGAGGAGACCCGGCCTCCTGATTCCGGGGCGTG-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904102 45 + 1946073 GAGCAGGTGCAAGGAGGAGACCCAGCCTCCTGATCCTGGGGCGTG-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933146 44 - 2117846 GAGTAGGTG---CAAGGAGCCCCAGCCTCCTGACCCTGGGGCAGGGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848242 44 - 16357246 GAGCAGGTG---CAAGGAGACCCGGCCTCCTGATCCTGGGGCAGGGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1329051 47 - 1807191 GAGCAGGTGGAAGAAGGAGACCCAGTCTCCTGATCCTAGGGCAGAGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 8323 44 + 5963231 GAGCAGGTG---CAAGGAGACCCGGCCTCCTGATCCTGGGGCAGGGA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276523 38 - 42659167 AACATGACTGAAGGGCAAGACGTGGACTCCAGATGCTG--------- i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075382 33 - 69331447 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I a score=1122754.000000 s hg38.chr22_GL383582v2_alt 63558 122 + 162811 T---GGGGTCACACCTTCTGTGATGGAGGAACTCAGTTTGGATGCGTC----ACCCAGGT----ATGACCTTGCAAGAGTCACCAAAATTGCC-GAGAGGCCCCAGTTAGCA-TCCCATTCC-CAGATGATGGTCC s panTro5.chr22 28843928 122 + 37823149 T---GGGGTCACACCTTCTGTGATGGAGGAACTCAGTTTGGATGCGTC----ACCCAGGT----ATGACCTTGCAAGAGTCACCAAAATTGCC-GAGAGGCCCCAGTTAGCA-TCCCATTCC-CAGATGATGGTCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118567 122 + 50109623 T---GGGGTCACACCTTCTGTGATGGAGGAACTCAGTTTGGATGCGTC----ACCCAGGT----ATGACCTTGCAAGAGTCACCAAAATTGCC-GAGAGGCCCCAGTTAGCA-TCCCATTCC-CAGATGATGGTCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140534 123 + 4464012 T---GGGGTCACAACTTCTGTGATGGAGGAACTCAGTTTGGATGCGTC----ACCCAGGT----ATGACCTTGCAAGAGTCACCAAAATTGCCGGAGAGGCCCCAGTTAGCA-TCCCATTCC-CAGATGATGGTCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638077 106 - 115148730 T--GGGGGTCACACCTTCTAGGATGGAGGAACT----------------------CAGGT----ATGACCTTGCAAGAGTCACCAAAATTGCC-CATAGGCCCCAGTTAACA-TCCTATTTTACAGATGATGGTCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84252382 122 + 92844088 ----GGGGTCACACCTTCTACGATGGAGGAACTCAGTTTGAATGCGTC----ACCCAGCT----GTGACTTTGCAAGAGTCACCGAAATTGCC-AATAGGCCCCAGTTAGCA-TCCCATTTTACAGCTGATGGTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597375 122 - 96509753 ----GGGGTCACACCTTCTACGATGGAGGAACTCAGTTTGAATGCGTC----ACCCAGCT----GTGACTTTGCAAGAGTCACCGAAATTGCC-AATAGGCCCCAGTTAGCA-TCCCATTTTACAGCTGATGGTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089415 122 - 13098629 ----GGGGTCACACCTTCTACGACGGAGGAACTCAGTTTGAATGCGTC----ACCCAGCT----GTGACTTTGCAAGAGTCACCGAAATTGCC-AATAGGCCCCAGTTAGCA-TCCCATTTTACAGCTGATGGTCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4055936 122 - 4483953 ----GGGGTCACACCTTCTATGATGGAGGAACTCAGTTTGAATGCGTC----ACCCAGCT----ATGACTTTGCAAGAGTCACCGAAATTGCC-AATAGGCCCCAGTTAGCA-TCCCATTTTACAGCTGATGGTCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686730 118 + 33263144 ----GGGGTCACACCTTCTACGAT----GAACTCAGTTTGGATGCATC----ACCCAGCT----ATGACTTTGCAAGAGTCACCGAAATTGCC-AATAGGCCCCAGTTAGCA-TCCCATTTTACAGCTGATGGTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13960899 122 - 14338769 ----GGGGTCACATCTTCTACGATGGAGGAACTCAGTTTGAATACGTC----ACCCAGCT----ATGACTTTGCAAGAGTCACCGAAATTGCC-AGTAGGCCCCAGTTAGCA-TCCCATTTTACAGCTGATGGTCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904147 122 + 1946073 ----GGGGTCACACATTCTACGACGGAGGAACTCAGTTTGAATGCGTC----ACCCAGCT----ATGACCTTGCAAGAGTCACCGAAATTGCC-AATAAGGCCCAGTTAGCA-TCCCATTTTACAGCTGATGGTCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933190 121 - 2117846 T--GGGGGTCACATCTTCTATGATGGAGGAACTCACTATGGACGCCTC----ATTCAGGT----ATGACCTTGCAAGAATCACTGAAATTGCC-GACAGGCCACAGTTAGCA-CCCCATTTTACA---GATGGTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848286 124 - 16357246 C--AGAGGTCACATCTTCTATGATGGAGGAACTCACTATGGATGCCTC----ACTCAGGT----ATGACCTTGCAAGAATCACTGAAATTGCC-GACAGGCCACAGGTAGCA-CTCCATTTTACAGATGATGGTCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1329098 124 - 1807191 TGGGGGGGTCACAACTTCTATAACAGAGGAACTCAGTTTAGATA--TC----ACCTGAGT----ATGACCTTGCAAGAGTCACCGAAATTACA-GATAGGCCCCAGTTAGCA-TCCCATTTCACAGATGATGGTCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 8367 124 + 5963231 T--GGGGGTCACATCTTCTATGATGGAGGAACTCCCTATGGATGCCTC----ATTCAGGT----ATGACCTTGCAAGCATCACTGAAATTGCC-AACAGGCCACAGTTAGCA-CCCCATTTTACAGATGATGGTCT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276561 120 - 42659167 ----GGGGTCATATTCTCTATGGCTGAGGGACTCAGTTTGCGTCCAACA---ACTCGGCTGTGGATGACCTTGT----GTCATGAAAATTGAC-AGTCGGTGCCGGGCAGCattcccatttcacagaggagg---- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46075415 125 - 69331447 ---TGGGGTCACACTCTCTACGGAGGAGGGGCTGCCGCTGGATCAGACCTCTTCTTAGCT----CTGACTTTGCAAAGGTCGCCAAAATTGTC-AGTGGGCCAT-GTTAG-a-tccccttctacaggtgaagaaac i canFam3.chr10 I 33 I 99 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I a score=233639.000000 s hg38.chr22_GL383582v2_alt 63680 21 + 162811 ATGCC--GGTGAGCAGTGAGGCC s panTro5.chr22 28844050 21 + 37823149 ATGCC--GGTGAGCAGTGAGGCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118689 21 + 50109623 ATGCC--GGTGAGCAGTGAGGCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140657 21 + 4464012 ATGCC--GGTGAGCAGTGAGGCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638183 21 - 115148730 ATGCC--GGTGAGCAGTGAGGCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84252504 21 + 92844088 ATGCC--GGTGAGCAGTGAGGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597497 21 - 96509753 ATGCC--GGTGAGCAGTGAGGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089537 21 - 13098629 ATGCC--GGTGAGCAGTGAGGCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4056058 21 - 4483953 ATGCC--GGTGAGCAGTGAGGCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686848 21 + 33263144 ATGCT--GGTGAGCAGTGAGGCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13961021 21 - 14338769 ATGCC--GGTAAGCAGTGAGGCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904269 21 + 1946073 ATGCA--GGTGAGCAGTGAGGCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933311 21 - 2117846 ATGCT--GGTGAGCAGTGAGGCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848410 21 - 16357246 ATGCT--GGTGAGCAGTGAGGCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1329222 21 - 1807191 ATGCC--GGTGAGCAGTGAGGCC i cebCap1.NW_016107750v1 C 0 I 1811 s aotNan1.NW_018512383v1 8491 21 + 5963231 ATGCT--GGTGAGCAGTGAGGCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276681 23 - 42659167 agaccgaggTGAGTAGCCAGACC i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I a score=247861.000000 s hg38.chr22_GL383582v2_alt 63701 33 + 162811 CGAGGACCCACAG---------TGCAAAAGG---TTTGAACCGGG s panTro5.chr22 28844071 33 + 37823149 TGAGGACCCACAG---------TGCAAAAGG---TTTGAACCGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118710 33 + 50109623 CGAGGACCCACAG---------TGCAAAAGG---TTTGAACCGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140678 33 + 4464012 CGAGGACCCACAG---------TGCAAAAGG---TTTGAACCGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638204 33 - 115148730 CGAGGACCCACAG---------TGCAAAAGG---TTTGAACCGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84252525 33 + 92844088 TGAAGACCCACAG---------TGCAAAAGG---TTTGAACCGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597518 33 - 96509753 TGAAGACCCACAG---------TGCAAAAGG---TTTGAACCGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089558 33 - 13098629 TGAAGACCCACAG---------TGCAAAAGG---TTTGAACTGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4056079 33 - 4483953 TGAAGACCCACAG---------TGCAAAAGG---TTTGAACCCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686869 33 + 33263144 TGAAGACCCACAG---------TGCAAAAGG---TTTGAACCGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13961042 33 - 14338769 TGAAGACCCACAG---------TGCAAAAGG---TTTGAACCTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904290 33 + 1946073 TGAGGACCCACAG---------TGCAAAAGG---TTTGAACCGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933332 41 - 2117846 AGAGAACCCA-AAGGTTTCTCTTGCAAAAGG---TTTGAACAGTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848431 42 - 16357246 AGAGAACCCGTAAGGTTTCTCTTGCAAAAGG---TTTAAACGGTG i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 8512 42 + 5963231 AGAGAACCCATAAGGTTTCTCTTGCAAAAAG---TTTGAACAGTG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276704 34 - 42659167 CAAGGACTGACAG-----------CAAGAAGACATTTGAACCGGC i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e cebCap1.NW_016107750v1 1329243 1811 - 1807191 I a score=9555.000000 s hg38.chr22_GL383582v2_alt 63734 1 + 162811 T s panTro5.chr22 28844104 1 + 37823149 T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118743 1 + 50109623 T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140711 1 + 4464012 T i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638237 1 - 115148730 T i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84252558 1 + 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597551 1 - 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089591 1 - 13098629 T i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4056112 1 - 4483953 T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686902 1 + 33263144 T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13961075 1 - 14338769 T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904323 1 + 1946073 T i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933373 1 - 2117846 T i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848473 1 - 16357246 T i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 8554 1 + 5963231 T i aotNan1.NW_018512383v1 C 0 I 47 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e cebCap1.NW_016107750v1 1329243 1811 - 1807191 I a score=132691.000000 s hg38.chr22_GL383582v2_alt 63735 20 + 162811 CCACTATAT-CCCTTCATCCT s panTro5.chr22 28844105 20 + 37823149 CCACTATAT-CCCTTCATCCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118744 20 + 50109623 CCACTATAT-CCCTTCATCCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140712 18 + 4464012 -CACTATAT--CCTTCATCCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638238 20 - 115148730 -CACTGCACCCCCTTCATCCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84252559 19 + 92844088 -CACTATAT-CCCTTCATCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597552 19 - 96509753 -CACTATAT-CCCTTCATCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089592 19 - 13098629 -CACTATAT-CCCTTCATCCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4056113 18 - 4483953 -T-CTATAT-CCCTTCATCCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686903 19 + 33263144 -CACTATAT-CCCTTCATCCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13961076 19 - 14338769 -CACTATAT-CCCTTCATCCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904324 19 + 1946073 -CACTATAT-CCCTTCATCCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933374 19 - 2117846 -TACTACAC-CCCTTCATCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848474 19 - 16357246 -CACTATAC-CCCTTCATCCT i saiBol1.JH378157 C 0 C 0 e aotNan1.NW_018512383v1 8555 47 + 5963231 I e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e cebCap1.NW_016107750v1 1329243 1811 - 1807191 I a score=117001.000000 s hg38.chr22_GL383582v2_alt 63755 32 + 162811 TGATTTCTAACTTACTCAtttattt-------------------agaccat s panTro5.chr22 28844125 32 + 37823149 TGATTTCTAACTTACTCAtttattt-------------------agaccat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118764 32 + 50109623 TGATTTCTAACTTACTCAtttattt-------------------agaccat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140730 32 + 4464012 CGATTTCTAACTTACTCAtttattt-------------------agaccat i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84252578 51 + 92844088 CGATTTCTAACTTACTCAtttctttttttttttttttttttttgagacgga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597571 51 - 96509753 CGATTTCTAACTTACTCAtttctttttttttttttttttttttgagacgga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089611 32 - 13098629 CGATTTCTAACTTACTCAtttcttt-------------------agaccat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4056131 32 - 4483953 CGATTTCTAACTTACTCAtttcttt-------------------agaccgt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686922 32 + 33263144 TGATTTCTAACTTATTCAtttcttt-------------------ggaccat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13961095 32 - 14338769 CGATTTCTAACTTATTCAtttcttt-------------------agaccat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904343 32 + 1946073 CGATTTCTAACTTATTCAtttcttt-------------------agaccat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933393 30 - 2117846 CGATTTTCTTCCCCCCCA--CCCCT-------------------agatgga i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848493 28 - 16357246 CGAttttcttttcttc----ccccc-------------------agatgga i saiBol1.JH378157 C 0 C 0 e aotNan1.NW_018512383v1 8555 47 + 5963231 I e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e cebCap1.NW_016107750v1 1329243 1811 - 1807191 I e nomLeu3.chr7b 106638258 0 - 115148730 C a score=1040010.000000 s hg38.chr22_GL383582v2_alt 63787 151 + 162811 gtctggctctgtcacccaggctggagcgcaatggcgcgatcttggctcactgcaacctccacctcccgggttcaagcaattcacctgcctcagcctcccatgtagctgggattacaggtgcccaccaccgtgccccgctaa-tttttgtatt s panTro5.chr22 28844157 151 + 37823149 gtctggctctgtcacccaggctggagcgcaatggcacgatcttggctcactgcaacctccacctcccgggttcaagcaattctcctgcctcagcctcccatgtagctgggattacaggtgcccaccaccgcgccccgctaa-tttttgtatt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118796 151 + 50109623 gtctggctctgtcacccaggctggagcgcaatggcacgatcttggctcactgcaacctccacctcccgggttcaagcaattctcctgcctcagcctcccatgtagctgggattacaggtgcccaccaccgcgccccgctaa-tttttgtatt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140762 150 + 4464012 gtctggctctgtcacccaggctggagtgcaatggcgcgatcttggctcactgcaacctccgcctcccgggttcaagcaattctcccgcctcagcctcccaagtagctgggattacaggtg-ccaccaccgcaacccgctaa-tttttgtatt i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84252629 152 + 92844088 gtctggctctgtagcccaggctggagtgcagtggccggatctcagctcactgcaagctccgcctcccgggttcacgccattctccggcctcagcctccagagtagctgggactacaggcgcccgccacctcgcccggctagttttttgtatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597622 152 - 96509753 atctcgctctgtagcccaggctggagtgcagtggccggatctcagctcactgcaagctccgcctcccgggttcacgccattctccggcctcagcctcccgagtagctgggactacaggcgcccgccacctcgcccggctagttttttgtatt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089643 151 - 13098629 gtctggctctgtcacccaggttggagtgcaatgttacgatcttggctcactacaacctccacctcccaggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggtgcccgccaccgcacccagctaa-tttttgtatt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4056163 151 - 4483953 gtctggctctgtcacccaggttggagtgcaatgttgcgatcttggctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagtctcccgagtagctgagattacaggtgcccgccaccgcacccagctaa-tttttgtatt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24686954 151 + 33263144 gtctggctctgtcacccaggttggagtgcaatggtgctatcttggctcactgcaacctccacctcccgggttcaagcaattctcctgcctcagtctcccaagtagctgggattacaggtgcccgccaccgcaaccggctaa-tttttgtatt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13961127 151 - 14338769 gtctggctccatcacccaggttggagtgcaatggtgcgatcttggctcactgcaacctccacctcccgggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggtgcccgccaccgcacccggctaa-tttttgtatt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904375 151 + 1946073 gtctggctctgtcacccaggttggagtgcaatggtgcgatcttggcttactgcaacctccacctcccgggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggtgcctgccactgcacccggctaa-tttttgtatt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933423 150 - 2117846 gtcttgctcagttacccaggctggagtgcg-tggtgccatctctgttcactgcaacctctgcctcttgggttcaagcaattctcctgcctcagcctactgagtagctagaattacaggtgcctatcactgcgcctggctga-tttttgtatt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848521 150 - 16357246 gtcttgctctgtcacccaggctggagtgca-tggcgccatctccgttcactgcaacctctgcctcgtgggttcaagcaatcctcctgcctcagcctcctgagtagctgggatcacaggtgcccgtcactgcacccagctga-tttttgtatt i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 8602 150 + 5963231 gtcttgctctgtcacccaggctggagtgca-tggcgctatctccattcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcctgagtagttgggattacaggtgcctgtcactgcgcccggctga-tttttgtatt i aotNan1.NW_018512383v1 I 47 C 0 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e cebCap1.NW_016107750v1 1329243 1811 - 1807191 I e nomLeu3.chr7b 106638258 0 - 115148730 C a score=695080.000000 s hg38.chr22_GL383582v2_alt 63938 121 + 162811 t-ttagtagaggcagggtttcaccatgttg---gccaggctggtctcgaactcctgaccttgtgatccccccaccttggtctcccaagatgctgggattacaggtgtgagccaccgcgcccagcc s panTro5.chr22 28844308 121 + 37823149 t-ttagtagaggcagggtttcaccatgttg---gccaggctggtctcgaactcctgaccttgtgatccccccaccttggtctcccaagatgctgggattacaggtgtgagccaccgtgcccagcc i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3140912 121 + 4464012 t-ttagtagaggcagggtttcaccatgttg---gccaggctggtctcgaactcctgaccttgtgatccccccaccttggactcccaagatgctgggattacaagtgtgagccaccgcgcccagcc i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84252781 122 + 92844088 tcttagtagagacggggtttcacggtgtta---gccaggatggtctcgatctcctgacctcgtgatccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggcc i rheMac8.chr10 C 0 I 17 s macFas5.chr10 87597774 122 - 96509753 tcttagtagagacggggtttcaccgtgtta---gccaggatggtctcgatctcctgacctcgtgatccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggcc i macFas5.chr10 C 0 I 1 s macNem1.NW_012012688v1 7089794 120 - 13098629 t-ttagtagagac-aggtttcaccatgttg---gccaggctggtctcgaactcctgaccttgtgattcccccgcctcagtctcccaagatgctgggattacaggtgtgagccaccgtgcccagcc i macNem1.NW_012012688v1 C 0 I 2 s cerAty1.NW_011999588v1 4056314 120 - 4483953 t-ttagtagagac-aggtttcaccatgttg---gccaggctggtctcgaactcctgaccttgtgattcccccgcctcagtctcccaagatgctgggattacaggtgtgagccaccgtgcccagcc i cerAty1.NW_011999588v1 C 0 I 2 s chlSab2.chr19 24687105 120 + 33263144 t-ttagtagagac-aggtttcaccatgttg---gccaggctggtctccaactcctgaccttgtgattcccccgcctcagtctcccaagatgctgggattacaggtgtgagccaccgtgcccagcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13961278 120 - 14338769 t-ttagtagagac-aggtttcaccatgttg---gccaggctggtctcgaactcctgaccttgtgattcccccgcctcagtctcccaagatgctgggattacaggtgtgagccaccgtgcccagcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904526 120 + 1946073 t-ttagtagagat-gggtttcaccgtgttg---gccaggctggtctcgaactcctgaccttgtgattcccccacctcagtctcccaagatgctgggattataggtgtgagccaccatgcccagcT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933573 121 - 2117846 t-ttaatagagatggggtttcaccatgttg---gccagggtcgtctcgaactcctgaccttgtgatccacctgcctcgacctcccaaagtggtgtgattatagctgtgagccattgcgccTCGCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848671 121 - 16357246 t-ttagtagagacagggtttcaccatgttg---gccagggtggtctccaactcctgaccttgtgatccacccgccttggcctcccaaagtgatgtgattacagctgtgagccattgcgccTCACC i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 8752 122 + 5963231 t-ttagt--agacagggtttcaccatgttggccgccagggtggtctcaaactcctgaccttgtgatccacctgcctgggcctcccaaagtggtgtgattacagctgtgagccattgcgcctcgcc i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e cebCap1.NW_016107750v1 1329243 1811 - 1807191 I e nomLeu3.chr7b 106638258 0 - 115148730 C e panPan2.chr22 41118947 0 + 50109623 C a score=5033.000000 s hg38.chr22_GL383582v2_alt 64059 2 + 162811 GT s panTro5.chr22 28844429 2 + 37823149 GT i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141033 2 + 4464012 GT i gorGor5.CYUI01015375v1 C 0 C 0 s chlSab2.chr19 24687225 2 + 33263144 GT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13961398 2 - 14338769 GT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904646 2 + 1946073 GT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933694 2 - 2117846 GT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848792 2 - 16357246 AT i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 8874 2 + 5963231 AT i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e cebCap1.NW_016107750v1 1329243 1811 - 1807191 I e cerAty1.NW_011999588v1 4056434 2 - 4483953 I e macNem1.NW_012012688v1 7089914 2 - 13098629 I e macFas5.chr10 87597896 1 - 96509753 I e rheMac8.chr10 84252903 17 + 92844088 I e nomLeu3.chr7b 106638258 0 - 115148730 C e panPan2.chr22 41118947 0 + 50109623 C a score=12929.000000 s hg38.chr22_GL383582v2_alt 64061 6 + 162811 TGAttt s panTro5.chr22 28844431 6 + 37823149 TGAttt i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141035 6 + 4464012 TGAttt i gorGor5.CYUI01015375v1 C 0 C 0 s macFas5.chr10 87597897 4 - 96509753 --ACTT i macFas5.chr10 I 1 I 1 s macNem1.NW_012012688v1 7089916 6 - 13098629 TGAttt i macNem1.NW_012012688v1 I 2 I 4 s cerAty1.NW_011999588v1 4056436 6 - 4483953 TGAttt i cerAty1.NW_011999588v1 I 2 I 4 s calJac3.chrUn_GL286373 1933696 6 - 2117846 TGATTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848794 6 - 16357246 TGAttt i saiBol1.JH378157 C 0 C 0 e aotNan1.NW_018512383v1 8876 0 + 5963231 C e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e cebCap1.NW_016107750v1 1329243 1811 - 1807191 I e colAng1.NW_012115588v1 904648 0 + 1946073 C e manLeu1.NW_012102031v1 13961400 0 - 14338769 C e chlSab2.chr19 24687227 0 + 33263144 C e rheMac8.chr10 84252903 17 + 92844088 I e nomLeu3.chr7b 106638258 0 - 115148730 C e panPan2.chr22 41118947 0 + 50109623 C a score=4191.000000 s hg38.chr22_GL383582v2_alt 64067 8 + 162811 tttttttt s panTro5.chr22 28844437 8 + 37823149 tttttttc i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141041 8 + 4464012 tttttttt i gorGor5.CYUI01015375v1 C 0 C 0 s macFas5.chr10 87597902 8 - 96509753 CTCAtttc i macFas5.chr10 I 1 C 0 s calJac3.chrUn_GL286373 1933702 8 - 2117846 CTTACTTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848800 8 - 16357246 cttactta i saiBol1.JH378157 C 0 C 0 e aotNan1.NW_018512383v1 8876 0 + 5963231 C e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e cebCap1.NW_016107750v1 1329243 1811 - 1807191 I e colAng1.NW_012115588v1 904648 0 + 1946073 C e manLeu1.NW_012102031v1 13961400 0 - 14338769 C e chlSab2.chr19 24687227 0 + 33263144 C e cerAty1.NW_011999588v1 4056442 4 - 4483953 I e macNem1.NW_012012688v1 7089922 4 - 13098629 I e rheMac8.chr10 84252903 17 + 92844088 I e nomLeu3.chr7b 106638258 0 - 115148730 C e panPan2.chr22 41118947 0 + 50109623 C a score=912.000000 s hg38.chr22_GL383582v2_alt 64075 6 + 162811 tttttt s panTro5.chr22 28844445 6 + 37823149 tttttt i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141049 6 + 4464012 tttttt i gorGor5.CYUI01015375v1 C 0 C 0 s macFas5.chr10 87597910 3 - 96509753 ttt--- i macFas5.chr10 C 0 C 0 s calJac3.chrUn_GL286373 1933710 6 - 2117846 CTTACT i calJac3.chrUn_GL286373 C 0 C 0 e aotNan1.NW_018512383v1 8876 0 + 5963231 C e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e cebCap1.NW_016107750v1 1329243 1811 - 1807191 I e saiBol1.JH378157 8848808 0 - 16357246 C e colAng1.NW_012115588v1 904648 0 + 1946073 C e manLeu1.NW_012102031v1 13961400 0 - 14338769 C e chlSab2.chr19 24687227 0 + 33263144 C e cerAty1.NW_011999588v1 4056442 4 - 4483953 I e macNem1.NW_012012688v1 7089922 4 - 13098629 I e rheMac8.chr10 84252903 17 + 92844088 I e nomLeu3.chr7b 106638258 0 - 115148730 C e panPan2.chr22 41118947 0 + 50109623 C a score=1501.000000 s hg38.chr22_GL383582v2_alt 64081 17 + 162811 ttttttttttttttttg s panTro5.chr22 28844451 10 + 37823149 ttttttttt-------g i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141055 14 + 4464012 ttttttttt---ttttg i gorGor5.CYUI01015375v1 C 0 C 0 e aotNan1.NW_018512383v1 8876 0 + 5963231 C e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e cebCap1.NW_016107750v1 1329243 1811 - 1807191 I e saiBol1.JH378157 8848808 0 - 16357246 C e calJac3.chrUn_GL286373 1933716 0 - 2117846 C e colAng1.NW_012115588v1 904648 0 + 1946073 C e manLeu1.NW_012102031v1 13961400 0 - 14338769 C e chlSab2.chr19 24687227 0 + 33263144 C e cerAty1.NW_011999588v1 4056442 4 - 4483953 I e macNem1.NW_012012688v1 7089922 4 - 13098629 I e macFas5.chr10 87597913 0 - 96509753 C e rheMac8.chr10 84252903 17 + 92844088 I e nomLeu3.chr7b 106638258 0 - 115148730 C e panPan2.chr22 41118947 0 + 50109623 C a score=42940.000000 s hg38.chr22_GL383582v2_alt 64098 63 + 162811 agacagagtctcgctctgtcgcccagactggagtgtaatggtgtgttctcagctcacttcaag s panTro5.chr22 28844461 63 + 37823149 agacggagtctcgctctgtcgcccagactggagtgtaatggcgtgttctcagctcacttcaag i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141069 63 + 4464012 agacggagtctcgctctgtcgcccagactggagtgtagtggcgtgttctcagctcacttcaag i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84252920 63 + 92844088 agaccatgtctggctctgtcacccaggttggagtgcaatgttacgatcttggctcactgcaac i rheMac8.chr10 I 17 C 0 s macFas5.chr10 87597913 63 - 96509753 agaccatgtctggctctgtcacccaggttggagtgcaatgttacgatcttggctcactgcaac i macFas5.chr10 C 0 C 0 e aotNan1.NW_018512383v1 8876 0 + 5963231 C e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e cebCap1.NW_016107750v1 1329243 1811 - 1807191 I e saiBol1.JH378157 8848808 0 - 16357246 C e calJac3.chrUn_GL286373 1933716 0 - 2117846 C e colAng1.NW_012115588v1 904648 0 + 1946073 C e manLeu1.NW_012102031v1 13961400 0 - 14338769 C e chlSab2.chr19 24687227 0 + 33263144 C e cerAty1.NW_011999588v1 4056442 4 - 4483953 I e macNem1.NW_012012688v1 7089922 4 - 13098629 I e nomLeu3.chr7b 106638258 0 - 115148730 C e panPan2.chr22 41118947 0 + 50109623 C a score=107209.000000 s hg38.chr22_GL383582v2_alt 64161 97 + 162811 ctctgcctcatgggttcatgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccaccacctcgcctggctaattggtttgtatc s panTro5.chr22 28844524 97 + 37823149 ctctgcctcatgggttcatgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccaccacctcgcctggctaattggtttgtatt i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141132 97 + 4464012 ctctgcctcctgggttcatgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccactacctcgcctggctaattggtttgtatt i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84252983 95 + 92844088 ctccacctcccaggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggtgcccgccaccgcacccagctaatt--tttgtatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87597976 95 - 96509753 ctccacctcccaggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggtgcccgccaccgcacccagctaatt--tttgtatt i macFas5.chr10 C 0 C 0 s cebCap1.NW_016107750v1 1331054 95 - 1807191 ctctgcttcctgggttcgagcaattcccctgtctcagcctcctgagtagctgggattacaggtgcctgtcactgcgcccggctgatt--tttgtatt i cebCap1.NW_016107750v1 I 1811 C 0 e aotNan1.NW_018512383v1 8876 0 + 5963231 C e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e saiBol1.JH378157 8848808 0 - 16357246 C e calJac3.chrUn_GL286373 1933716 0 - 2117846 C e colAng1.NW_012115588v1 904648 0 + 1946073 C e manLeu1.NW_012102031v1 13961400 0 - 14338769 C e chlSab2.chr19 24687227 0 + 33263144 C e cerAty1.NW_011999588v1 4056442 4 - 4483953 I e macNem1.NW_012012688v1 7089922 4 - 13098629 I e nomLeu3.chr7b 106638258 0 - 115148730 C e panPan2.chr22 41118947 0 + 50109623 C a score=190302.000000 s hg38.chr22_GL383582v2_alt 64258 120 + 162811 tttagtagagac-gggtttcattgtgttagccaggatggtctcgatctcctaacctcatgatccgcccgccttag---cctcccaaagggccgggattacaggcgtgagccaccgcgcccggcc s panTro5.chr22 28844621 120 + 37823149 tttagtagagac-gggtttcatcgtgttagccaggatggtctcgatctcctaacctcatgatccgcccgccttag---cctcccaaagtgccgggattacaggcgtgagccaccgcgcccggcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41118947 120 + 50109623 tttagtagagac-gggtttcatcgtgttagccaggatggtctcgatctcctaacctcatgatccgcccgccttag---cctcccaaagtgccgggattacaggcgtgagccaccgcgcccggcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141229 124 + 4464012 tttagtagagacggggttccaccgtgttagccaggatggtctcgatctcctaacctcacgatccgcccgccttagcctcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcc i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84253078 120 + 92844088 tttagtagagac-aggtttcaccatgttggccaggctggtctcgaactcctgaccttgtgattcccccgcctcag---tctcccaagatgctgggattacaggtgtgagccaccgtgcccagcc i rheMac8.chr10 C 0 I 2 s macFas5.chr10 87598071 120 - 96509753 tttagtagagac-aggtttcaccatgttggccaggctggtctcgaactcctgaccttgtgattcccccgcctcag---tctcccaagatgctgggattacaggtgtgagccactgtgcccagcc i macFas5.chr10 C 0 I 2 s cebCap1.NW_016107750v1 1331149 121 - 1807191 tttagtagagacagggcttcaccctgttggccagggtggtctcgaactcctgaccttgtgatccacctgcctcgg---cctcccaaagtggtgtgattacagctgtgagccattgcgccttgcc i cebCap1.NW_016107750v1 C 0 I 2 e aotNan1.NW_018512383v1 8876 0 + 5963231 C e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e saiBol1.JH378157 8848808 0 - 16357246 C e calJac3.chrUn_GL286373 1933716 0 - 2117846 C e colAng1.NW_012115588v1 904648 0 + 1946073 C e manLeu1.NW_012102031v1 13961400 0 - 14338769 C e chlSab2.chr19 24687227 0 + 33263144 C e cerAty1.NW_011999588v1 4056442 4 - 4483953 I e macNem1.NW_012012688v1 7089922 4 - 13098629 I e nomLeu3.chr7b 106638258 0 - 115148730 C a score=30525.000000 s hg38.chr22_GL383582v2_alt 64378 6 + 162811 TGAttt s panTro5.chr22 28844741 6 + 37823149 TGAttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41119067 6 + 50109623 TGAttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141353 6 + 4464012 TGAttt i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84253200 6 + 92844088 TGAttt i rheMac8.chr10 I 2 I 4 s macFas5.chr10 87598193 6 - 96509753 TGAttt i macFas5.chr10 I 2 I 4 s chlSab2.chr19 24687227 6 + 33263144 TGAttt i chlSab2.chr19 C 0 I 4 s manLeu1.NW_012102031v1 13961400 6 - 14338769 TGAttt i manLeu1.NW_012102031v1 C 0 I 4 s colAng1.NW_012115588v1 904648 6 + 1946073 TGAttt i colAng1.NW_012115588v1 C 0 I 4 s cebCap1.NW_016107750v1 1331272 6 - 1807191 TGATTT i cebCap1.NW_016107750v1 I 2 C 0 s aotNan1.NW_018512383v1 8876 6 + 5963231 TGATTT i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e saiBol1.JH378157 8848808 0 - 16357246 C e calJac3.chrUn_GL286373 1933716 0 - 2117846 C e cerAty1.NW_011999588v1 4056442 4 - 4483953 I e macNem1.NW_012012688v1 7089922 4 - 13098629 I e nomLeu3.chr7b 106638258 0 - 115148730 C a score=25137.000000 s hg38.chr22_GL383582v2_alt 64384 4 + 162811 ctta s panTro5.chr22 28844747 4 + 37823149 ctta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41119073 4 + 50109623 ctta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141359 4 + 4464012 ctta i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84253210 4 + 92844088 ttta i rheMac8.chr10 I 4 C 0 s macFas5.chr10 87598203 4 - 96509753 ttta i macFas5.chr10 I 4 C 0 s macNem1.NW_012012688v1 7089926 4 - 13098629 ttta i macNem1.NW_012012688v1 I 4 C 0 s cerAty1.NW_011999588v1 4056446 4 - 4483953 ctta i cerAty1.NW_011999588v1 I 4 C 0 s chlSab2.chr19 24687237 4 + 33263144 ctta i chlSab2.chr19 I 4 C 0 s manLeu1.NW_012102031v1 13961410 4 - 14338769 ctta i manLeu1.NW_012102031v1 I 4 C 0 s colAng1.NW_012115588v1 904658 4 + 1946073 ctta i colAng1.NW_012115588v1 I 4 C 0 s cebCap1.NW_016107750v1 1331278 4 - 1807191 CTTA i cebCap1.NW_016107750v1 C 0 I 8 s aotNan1.NW_018512383v1 8882 4 + 5963231 CTTA i aotNan1.NW_018512383v1 C 0 I 8 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e saiBol1.JH378157 8848808 0 - 16357246 C e calJac3.chrUn_GL286373 1933716 0 - 2117846 C e nomLeu3.chr7b 106638258 0 - 115148730 C a score=16562.000000 s hg38.chr22_GL383582v2_alt 64388 2 + 162811 tt s panTro5.chr22 28844751 2 + 37823149 tt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41119077 2 + 50109623 tt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141363 2 + 4464012 tt i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84253214 2 + 92844088 tt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87598207 2 - 96509753 tt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089930 2 - 13098629 tt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4056450 2 - 4483953 tt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24687241 2 + 33263144 tt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13961414 2 - 14338769 tt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904662 2 + 1946073 tt i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8848808 2 - 16357246 tt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1331290 2 - 1807191 TT i cebCap1.NW_016107750v1 I 8 C 0 s aotNan1.NW_018512383v1 8894 2 + 5963231 TT i aotNan1.NW_018512383v1 I 8 C 0 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e calJac3.chrUn_GL286373 1933716 0 - 2117846 C e nomLeu3.chr7b 106638258 0 - 115148730 C a score=2253558.000000 s hg38.chr22_GL383582v2_alt 64390 279 + 162811 cgtttatttagacattgtctggctgtgtcaccgaggttgcaaggcaatggcacaatctccactcactacaacctctgcctcctaagttcaagcaattctcctgcctcagcctcccaagtagctgggattgcaggcgtgcaccactgtgcccagctcattttttg-tatgtttagtagagaccggtttttgccatgttggccagactcatctggaacccctgacctcaggtgatccgcccaccttggcttccttaagtgctgggattataggcgtgagcca s panTro5.chr22 28844753 279 + 37823149 cgtttatttagacattgtctggctgtgtcaccgaggttgcaaggcaatggcacaatctccactcactacaacctctgcctcctaggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcatgcaccactgtgcccagctcattttttg-tatgtttagtagagacgggtttttgccatgttggccagactcatctggaacccctgacctcaggtgatccgcccaccttggcttccttaagtgctgggattataggcgtgagcca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41119079 279 + 50109623 cgtttatttagacattgtctggctgtgtcaccgaggttgcaaggcaatggcacaatctccactcactacaacctctgcctcctaggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcatgcaccactgtgcccagctcattttttg-tatgtttagtagagacgggtttttgccatgttggccagactcatctggaacccctgacctcaggtgatccgcccaccttggcttccttaagtgctgggattataggcgtgagcca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141365 279 + 4464012 cgtttatttagacattgtctggctgtgtcacccaggttgcagggcaatggcacaatctccactcactacaacctctgcctcctaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcatgcaccactgtgcccagctcattttttg-tatgtttagtagagacgggttttcaccatgttggccagactcgtctggaacccctgacctcaggtgatctgcccaccttggcttccttaagtgctgggattataggcgtgagcca i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84253216 276 + 92844088 catttatttagacattgtgtggctctgtcacccaggttgcagtgcaatggcacaatctccgctcactacaacctctgcctcctaggttcaagcaatt---ctgccttagcctcccgagtagctgggattaaaggcatgtaccactgtgcccagctaattttttg-tatgtttagtagagacggggtttcgccatgttggccagacttgtctggaactcctgacctcaggtgatccatccaccttggcttccctaagtgttgggattacaggtgtgaggca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87598209 276 - 96509753 catttatttagacattgtgtggctctgtcacccaggttgcagtgcaatggcacaatctccgctcactacaacctctgcctcctaggttcaagcaatt---ctgccttagcctcccgagtagctgggattaaaggcatgtaccactgtgcccagctaattttttg-tatgtttagtagagacggggtttcgccatgttggccagacttgtctggaactcctgacctcaggtgatccatccaccttggcttccctaagtgttgggattacaggtgtgaggca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7089932 276 - 13098629 catttatttagacattgtgtggctctgtcacccaggttgcagtgcaatggcacaatctccgctcactacaacctctgcctcctaggttcaagcaatt---ctgccttagcctcccgagtagctgggattaaaggcatgtaccactgtgcccagctaattttttg-tatgtttagtatagacggggtttcgccatgttggccagacttgtctggaactcctgacctcaggtgatccatccaccttggcttccctaagtgttgggattacaggtgtgaggca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4056452 276 - 4483953 cttttatttagacattgtgtggctctgtcacccaggttgcagtgcaatggcacaatctccgctcactgcaacctctgcctcctaggttcaagcaatt---ctaccttagcctcccgagtagctgggattaaaggcatgtaccactgtgcccagctaattttttg-tatgtttagtagagacggggtttcgccatgttggccagacttgtctggaactcctgacctcaggtgatccatccaccttggcttccctaagtgctgggattacaggtgtgaggca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24687243 276 + 33263144 catttatttagacattgtctggctctgtcacccaggttgcagtgcaatggcacaatctccactcactacaacctctgcctcctaggttccagcaatt---ctgccttagcctcctgagtagctgggattaaaggcatgtaccactgtgcccaactaattttttg-tatgtttaatagagacggggtttcgccatgttggccagacttgtctggaacccctgacctcaggtgatccatccaccttggcttccctaagtgctgggattacaggtgtgaggca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13961416 276 - 14338769 cctttatttagacattgtctggctctgtcacccaggttgcagtgcaatggcacaatctccgctcactacaacctctgcctcctaggttcaagcaatt---ctgccttagcctcccgagtagctgggattaaaggcatgtaccactgtgcccagctaattttttg-tatgtttagtagagacggggtttcgccatgttggccagacttgtctggaactcctgacctcaggtgatccatccaccttggcttccctaagtgctgggattacaggtgtgaggca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904664 276 + 1946073 catttatttagacattgtctggttctgtcacccaggttgcagtgcaatggcacaatctctgctcactacaacctctgcctcctaggttcaagcaatt---ttgccttagcctcccgagtagctgggattaaaggcatgtaccactgtgcccagctaattttttg-tatggttagtagagaaggggtttcgccatgttggccagacttgtctggaactcctgacctcaagtgatctgtccatcttggcttccctaagtgctgggattacaggcgtgagcca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933716 278 - 2117846 CAtttatttagatgttgtctggctctgtcacccaggccggagtgcaatggcagaatctctgctcactacaacctccgcttcccaggttcaagcgattctcctgctgcagcctcccaagtagctgagattacagg--tacaccactgagcccagctaattttttgttatgtttagtagagatggggtttcaccatgttggccagatttgtcttgaactcctgacctgaggagatctacccacgtcagcctccgtaagtgctgggattacaggcctgagcca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8848810 272 - 16357246 catttatttagatgttgtctggctctgtcacccaggccggagtgcaatggcagaatctttgctcattacaa------gttcccaggtttaagtaattctcttgctgcagcctcccgagtagctgagattacagg--tacaccactgagcccagctaattttttgttatgtttagtagagatggggtttcaccatgtcggccagactcgtcttgaactcctgacctgagatgatccacccacctctgcctccctaagtgctgggatcacaggcctgagcca i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1331292 278 - 1807191 CAtttatttagatgttgtctggctttgtcacccaggccgtagtgcaatggcagaatctctgctcactacaacctccacttcccaggttcaagtgattctcttgctgcagcctcccgagtagctgggattacagg--tacaccactgagcccagctaattttctgttatgtttagtagagatggggtttcaccatgtcggccagactcatcttgaactcctgacctgaggtgatccacccacctcagcctccctaagtgctgggattacaggcctgagcca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 8896 278 + 5963231 CAtttatttagatgttgtctggctctgtcacacaggccagagtgcaatggcagaatctctgctcactacaacctccgcttcccaggttcaagctgttctcctgttgcagcctcctgagtagcggggattacagg--tacaccactgagcccagctaattttttgttatgtttagtagagatggggtttcaccatgttggccagactcgtcttgaactcctgacctgaggtgatccacccacctcagcttccctaagtgctgggattacaagcctgagcca i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e otoGar3.GL873526 36276738 0 - 42659167 C e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e nomLeu3.chr7b 106638258 0 - 115148730 C a score=91686.000000 s hg38.chr22_GL383582v2_alt 64669 12 + 162811 ccacgcacagcc s panTro5.chr22 28845032 12 + 37823149 ccacgcacagcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41119358 12 + 50109623 ccacgcacagcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141644 12 + 4464012 ccgcgcacagcc i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84253492 12 + 92844088 ccacgcgcagcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87598485 12 - 96509753 ccacgcgcagcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7090208 12 - 13098629 ccacgcgcagcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4056728 12 - 4483953 ccacgcgcagcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24687519 12 + 33263144 ccacgcgcagcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13961692 12 - 14338769 ccacgcgcagcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904940 12 + 1946073 ccgtgcacagcc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1933994 12 - 2117846 ccgtttctggcc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8849082 12 - 16357246 ccgtgcccggcc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1331570 12 - 1807191 ccgtgcccggcc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9174 12 + 5963231 ccgtgcccagcc i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276738 12 - 42659167 CCTCTCTCAACC i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I e nomLeu3.chr7b 106638258 0 - 115148730 C a score=349806.000000 s hg38.chr22_GL383582v2_alt 64681 37 + 162811 -TGATTTCCTGATTTAAACGGCACACAGGACCCT-GACT s panTro5.chr22 28845044 37 + 37823149 -TGATTTCCTGATTTAAACGGCACACAGGACCCT-GACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41119370 37 + 50109623 -TGATTTCCTGATTTAAACGGCACACAGGACCCT-GACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141656 37 + 4464012 -TGATTTCCTGATTTAAACGGCACACGGGACCCT-GACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638258 37 - 115148730 -TGATTTCCTGATTTAAACGGCACTCAGGACTCT-GACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84253504 37 + 92844088 -TGATTTCCTAATTTAAACGGCACATAGGACCCT-CACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87598497 37 - 96509753 -TGATTTCCTCATTTAAACGGCACATAGGACCCT-CACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7090220 37 - 13098629 -TGATTTCCTGATTTAAACGGCACATAGGACCCT-CACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4056740 37 - 4483953 -TGATTTCCTGATTTAAACGGCACTCAGGACCCT-GACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24687531 37 + 33263144 -TGATTTCCTGATTTAAACGGCACATAGGACCCT-CACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13961704 37 - 14338769 -TGATTTCCTGATTTAAACGGCACATAGGACCCT-CACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904952 37 + 1946073 -TGATTTCCTGATTTAAACGGCACATAGGACCCT-GACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934006 37 - 2117846 -TTATTTTCTAATTTAAACAGTACTCAGGACCCT-GACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8849094 37 - 16357246 -TTATTTTCTAATTTAAACAGTACTCAGGACCCT-GATT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1331582 37 - 1807191 -TTATTTTCTAATTTAAACAGTACTCAGGACCCT-GACT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9186 38 + 5963231 -TTATTTTCTAATTTAAACAGTACTCAGGACGCTAGACT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276750 38 - 42659167 TCAGTTTCCTCATTTCAGTGGTCCTTGTGAACCT-CACC i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46075540 99 - 69331447 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I a score=2802625.000000 s hg38.chr22_GL383582v2_alt 64718 286 + 162811 CGTCTTCCATTCCCAAGGCCTTTCCTTCTGGTGTCAGCAGAGGGGACTTTGTGC-TCC-TAACATATG--C--TGCCCAATGGGCTTGCACGCCCACTGCCAAGTCCAGCTCCACCTCCAGGCCCTTGCCCTACTCTTCCTTGGCCT----TTGGAAAATCCCATCTTTCATGCCATGCATAA----ATGCCCTCCCCCAGGAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTTGTCCAGACTGTGGCTCCACCCACCACCCATGTTTGCTGGTGGTGGGGGATCCT-------------------CAGG s panTro5.chr22 28845081 286 + 37823149 CGTCTTCCATTCCCAAGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTGC-TCC-TAACATATG--C--TGCCCAATGGGCTTGCACGCCCACTGCCAAGTCCAGCTCCACCTCCAGGCCCTTGCCCTACTCTTCCTTGGCCT----TTGGAAAATCCCATCTTTCATGCCATGCATAA----ATGCCCTTCCCCAAGAAGTCCCTGAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGACTGTGGCTCCACCCACCACCCATGTTTGCTGGTGGTGGGGGATCCT-------------------CAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41119407 286 + 50109623 CGTCTTCCATTCCCAAGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTGC-TCC-TAACATATG--C--TGCCCAATGGGCTTGCACGCCCACTGCCAAGTCCAGCTCCACCTCCAGGCCCTTGCCCTACTCTTCCTTGGCCT----TTGGAAAATCCCATCTTTCATGCCATGCATAA----ATGCCCTCCCCCAAGAAGTCCCTGAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGACTGTGGCTCCACCCACCACCCATGTTTGCTGGTGGTGGGGGATCCT-------------------CAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141693 286 + 4464012 CGTCTTCCATTCCCAAGGCCTTTCCTTCTGGTGTCAGCAGAGGGGACTTTGTGC-TCC-TAACATATG--C--TACCCAATGGGCTTGCACACCCACTGCCAAGTCCAGCTCCACCTCCAGGCCCTTGCCCTACTCTTCCTTGGCCT----TTGGAAAATCCCATCTTTCATGCCATGCATAA----ATGCCCTCCCCCAGAAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTAGTCCAGACTGTGGCTCCACCCACCACCCATGTTTGCTGGTGGTGGGGGATCCT-------------------CAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638295 306 - 115148730 CGTCTTCCATTCCCAAGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTCTGTGC-TCCATAACATATG--T--TGCCCAATGGGCTTGCACGCCCACTGCCAAGTCCAGCTCCACCTCCAGGCCCTTGCCCTACTCTTCCTTGGACT----TTGGAAAATCCAGTCCTTCATGCCATGTATAA----ATGCCCTCCCCCAGGAAGTCCCCCAAACCTGCTTCCCCTTCTCAACCTGCCTTATGGTCCAGACTGTGGCTCCAACCACCACTCATGTTTGCTGGTGGTGGGGGATCCTCAGGACCTCTGCTGCCCTCCAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84253541 286 + 92844088 TGTCTTCCATTCCCAGGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTAC-TCCATAACATATG--C--TGCCCAATGGGATTGCACGCCCATTGCCAAGTCCAGCCCCACCTCCAGGCCCTTGCCCCACTTCTTCTTGGCCT----TTGGAAAATCTCATCTTTCATGCCATGCATAA----ATGCCCTCCCCCAGGAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGA--------------------CACGTTTGCTGGTGGTGGAGGATACTTAGGATGTCTGCCACCCCCCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87598534 302 - 96509753 TGTCTTCCATTCCCAGGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTAC-TCCATAACATATG--C--TGCCCAATGGGATTGCACGCCCATTGCCAAGTCCAGCCCCACCTCCAGGCCCTTGCCCCACTTTTTCTTGGCCT----TTGGAAAATCTCATCTTTCATGCCATGCATAA----ATGCCCTCCCCCAGGAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGACTGTGGCTCTACCCA----CCACGTTTGCTGGTGGTGGAGGATCCTTAGGATGTCTGCCACCCCCCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7090257 302 - 13098629 TGTCTTCCATTCCCAGGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTAC-TCCATAACATATG--C--TGCCCAATGGGATTGCACGCCCATTGCCAAGTCCAGCCCCACCTCCAGGCCCTTGCCCCACTTTTTCTTGGCCT----TTGGAAAATCTCATCTTTCATGCCATGCATAA----ATGCCCTCCCCCAGGAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGACTGTGGCTCTACCCA----CCACGTTTGCTGGTGGTGGAGGATCCTTAGGATGTCTGCCACCCCCCAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4056777 306 - 4483953 TGTCTTCCATTCCCAGGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTAC-TCCATAACATATG--C--TGCCCAATGGGATTGCACGCCCATTGCCAAGTCCAGCCCCACCTCCAGGCCCTTGCCCCACTTTTTCTTGGCCT----TTGGAAAATCTCATCTTTCATGCCATGCATAA----ATGCCCTCCCCCAGGAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGCCTGTGGTTTCACCCACCACCCATGTTTGCTGCTGGTGGGGGATCCTCAGGACCTCTGCCACCCTCCAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24687568 302 + 33263144 TGTCTTCCAGTCCCAGGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTAC-TCCATAACATATG--C--TGCCCAATGGGATTGCACGCCCATTGCCAAGTCCAGCCCCACCTCCAGGCCCTTGCCCCACTTTTTCTTGGCCT----TTGGAAAATCTCATCTTTCATGCCATGTATAA----ATGCCCTCCCCCAGGAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGACTGTGGCTCTACCCA----CCACGTTTGCTGCTGGTGGAGGATCCTCAGGACCTCTGCTACCCTCCAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13961741 302 - 14338769 TGTCTTCCATTCCCAGGGCCTTTCTTTCTGGTGTCAGCAGAAGGGACTTTGTAC-TCCATAACATATG--C--TGCCCAATAGGATTGCACGCCCATTGCCAAGTCCAGCCCCACCTCCAGGCCCTTGCCCCACTTTTTCTTGGCCT----TTGGAAAATCTCATCTTTCATGCCATGCATAA----ATGCCCTCCCCCAGGAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGACTGTGGCTCTACCCA----CCATGTTTGCTGCTGGTGGGGGATCCTCAGGACCTCTGCCACCCTCCAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 904989 300 + 1946073 TTTCTTCCATTCCCAGGGCTTTTCCTTCTCGTGTCAGCAGAAGGGACTTTGTAC-TCCATAACATATG--C--TGCCCAATGGGATTGCACGCCCATTGCCAAGTCCAGCCCCACCTCCAGGCCCTTGCCCCACTTTTTCTTGGCCT----TTGGAAAATCTCATCTTTCATGTCATGCATAA----ATGTCCTCCCCCAGGAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGAC--TGGCTCTACCCA----CCACGTTTGCCGGTGATGGGTGATCCTTCGGATGTCTGCCACCCTCCAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934043 304 - 2117846 CCTCTCCCATT-CCAAGGCCCTTCCTTCTGGTGTCAGCAGAGGGGACTTTGTGC-TCCAGAATCTATG--C--TGCCTGGTGAGCTCGAACACTCACTGCAAAGTCCAGCCCCACCTCCAGGCCCTTGCCCTACTCTTCCTTGGTGT----TTGGAAAATCTAATCCTTCAGGCCGTGTACAA----ATGCCGTCCCCTA-GAAGTCCCCCAAACCTACTTCCCCTTTGCAGCCTGGCTTCTGATGTAGCCTGCTGCTTCACTCACCACCCACGTTTGCTGTTGGTGGGGGATGCTCAGGACCTCTACCGCCCTCCAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8849131 293 - 16357246 CCTCTCCCATTCCCAAGGCCTTTCCTTGTGGTGTCAGCAAAGGGGACTTTGTGC-TCCAGAGTCTATG--C--TGCCCAGTGAGCTTGAACACCCACTGCAAAGTCCAGCCCCACCTCCAGGCCCTTGCCCTACTCTTCCTTGACAT----TTGGAAAATCTAATCCTTCAGGCCGTGTACAA----ATGCCCTCCTCT----AGTCGCCCAAACCTGCTTCTCCTTTGCAGCCTGGCT--TGATGTAGCCTGTTGCTTCACTCACCACCCA-------TGCTGGTGGGTGGTGCTCAGGACCTCTGCAGCCCTCCAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1331619 298 - 1807191 CCTCTCCCACTCCCAAGGCCTTTCCTTCTGGTGTCAGCAGAGGGGACTTTGTGT-TCCAGAGTCTATG--C--TGCCCAGTGAGCTTGAATACCCACTGCAAAGTCCAGCCCCACCTGCAGGCCCTTGCCCTGCTCTTCCTTGGCAT----TTGGAAAATCTAATCCTTCAGGCTGTGTACAA----ATGCCCTCCTCTA-GAAGTCCCCCAAACCTGCTTCCCCTTTGCAGCCTGGCTTCTGATGCAGCCTGTGGCTTCACCCACTACCCA-------TGTTTGTGGGGGGTGCTCAGGACCTCTGCCGCCCTCCAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9224 305 + 5963231 CCTCTCCCATTCCCAAGGCCTTCCCTTCCGGTGTCAGCAGAGGGGACTTTGTGC-TCCAGAGTCTATG--C--TGCCCAGTGAGCCTGAACACCCACTGCAAAGTCCAGCCCCACCTCCAAGCCCTTGCCCTACTCTTCCTTGGCAT----TTGGAAAATCTAATCCTTCAGGCCGTGTACAA----ATGCCCTTCCCCA-GAAGTCCCCCAAACCTGCTTCCCCTTTGCAGCCTGGCCTCTGATGTAGCCTGCGGCTTCACTCACCACCCACGTTTGCTGCTGGTGAGGGATGCTCAGGACCTCTGCCGCCCTCCAGG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36276788 282 - 42659167 CTCCTCTCATTCCCCAGACCTTTCCTTCTGGAGTAATCAGAAGGGACTTGGGCCTTCCATAACTTCTG--CATTGTCCAACAGGCTTGCAGACCCAGTGCCCAGTCGCACCTCACCTCCAGGC--------------TTTTTTGCCT----TTGGAAA--------TTTCAAACTGTCCCTAAGGCCATGCTGTCCTTCAGGGAGCCACTTCAACCTGCTTCCTCTTCTGG----GGGTGCTTGCCCAGATGGTGGCTTTGCTCACCACCCATGTCTCCTGCTG--GGAGGACCCA---GGCCCCTGCCACCTTCCACC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46075639 249 - 69331447 CTTCCCCTATTCTCACAACTCTTCCTCCTGAAGGAACCAGAAGGGACCCAG-GT-CACGTAATTTAAGGAC--TGTCCAACCAGCTCTCAAATCCACCGCCAAGGCCACACTCCACTCCAGGCCTTGG------TTCTCTCTGACCTTTGATTGGAAAATCCAATCGGTCCTGC-------------AGGCTCT---------------GGACATCATCTTCCCAT-----------CTCCTTGTGCAGCCTGAAGCTCCACCCGCCACCC--GCTGTCTGCTGCTAGGGGGTCCC-------------------CAGG i canFam3.chr10 I 99 I 12 e mm10.chr15 82793340 630 + 104043685 I e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I a score=356007.000000 s hg38.chr22_GL383582v2_alt 65004 29 + 162811 ACCTCCTCCCTCACCTGGTTGAAGGTGTA s panTro5.chr22 28845367 27 + 37823149 ACCTCC--CCTCACCTGGTTGAAGGTGTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41119693 29 + 50109623 ACCTCCTCCCTCACCTGGTTGAAGGTGTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3141979 29 + 4464012 ACCTCCTCCCTCACCTGGTTGAAGGTGTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638601 29 - 115148730 ACCTCCTCCCTCACCTGGTCGAAGCAGTA i nomLeu3.chr7b C 0 I 3 s rheMac8.chr10 84253827 29 + 92844088 ACCTCCTCCCTCACCTGGTCGAAGCAGTA i rheMac8.chr10 C 0 I 3 s macFas5.chr10 87598836 29 - 96509753 ACCTCCTCCCTCACCTGGTCGAAGCAGTA i macFas5.chr10 C 0 I 3 s macNem1.NW_012012688v1 7090559 29 - 13098629 ACCTCCTCCCTCACCTGGTCGAAGCAGTA i macNem1.NW_012012688v1 C 0 I 3 s cerAty1.NW_011999588v1 4057083 29 - 4483953 ACCTCCTCCCTCACCTGGTCGAAGCAGTA i cerAty1.NW_011999588v1 C 0 I 3 s chlSab2.chr19 24687870 29 + 33263144 ACCTCCTCCCTCACCTGGTCGAAGCAGTA i chlSab2.chr19 C 0 I 3 s manLeu1.NW_012102031v1 13962043 29 - 14338769 ACCTCCTCCCTCACCTGGTCGAAGCAGTA i manLeu1.NW_012102031v1 C 0 I 3 s colAng1.NW_012115588v1 905289 29 + 1946073 ACCTCCTCCCTCACCTGGTCGAAGCAGTA i colAng1.NW_012115588v1 C 0 I 3 s calJac3.chrUn_GL286373 1934347 29 - 2117846 ACCTCCTCCCTCACCTGGCTGCAGCAGTT i calJac3.chrUn_GL286373 C 0 I 3 s saiBol1.JH378157 8849424 29 - 16357246 ACCTCCTCCCTCACCTGGTTGCAGCAGTT i saiBol1.JH378157 C 0 I 3 s cebCap1.NW_016107750v1 1331917 29 - 1807191 ACCTCCTCCCTCACCTGGTTGCAGCAGTT i cebCap1.NW_016107750v1 C 0 I 3 s aotNan1.NW_018512383v1 9529 29 + 5963231 ACCTCCTCCCTCACCTGGTTGAAGCTGTT i aotNan1.NW_018512383v1 C 0 I 3 s otoGar3.GL873526 36277070 29 - 42659167 ACCACCTCCCTCACCTTGCTGAAGCAGTA i otoGar3.GL873526 C 0 I 3 s mm10.chr15 82793970 29 + 104043685 ACCACCTCTCTCACCTTGTAAAAGCTGTA i mm10.chr15 I 630 I 3 s canFam3.chr10 46075900 29 - 69331447 CCCACCTTCCTTACCTGGCTGAAGTAGCA i canFam3.chr10 I 12 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5041618 23559 - 6317780 I e micMur3.chr7 5700672 716 + 108171978 I a score=61269.000000 s hg38.chr22_GL383582v2_alt 65033 6 + 162811 --TATGTT- s panTro5.chr22 28845394 6 + 37823149 --TATGTT- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41119722 6 + 50109623 --TATGTT- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142008 6 + 4464012 --TATGTT- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638633 6 - 115148730 --TGTGTT- i nomLeu3.chr7b I 3 C 0 s rheMac8.chr10 84253859 6 + 92844088 --TGTGTT- i rheMac8.chr10 I 3 C 0 s macFas5.chr10 87598868 6 - 96509753 --TGTGTT- i macFas5.chr10 I 3 C 0 s macNem1.NW_012012688v1 7090591 6 - 13098629 --TGTGTT- i macNem1.NW_012012688v1 I 3 C 0 s cerAty1.NW_011999588v1 4057115 6 - 4483953 --TGTGTT- i cerAty1.NW_011999588v1 I 3 C 0 s chlSab2.chr19 24687902 6 + 33263144 --TGTGTT- i chlSab2.chr19 I 3 C 0 s manLeu1.NW_012102031v1 13962075 6 - 14338769 --TGTGTT- i manLeu1.NW_012102031v1 I 3 C 0 s colAng1.NW_012115588v1 905321 6 + 1946073 --TGTGTT- i colAng1.NW_012115588v1 I 3 C 0 s calJac3.chrUn_GL286373 1934379 6 - 2117846 --TGTATT- i calJac3.chrUn_GL286373 I 3 C 0 s saiBol1.JH378157 8849456 6 - 16357246 --TGTATT- i saiBol1.JH378157 I 3 C 0 s cebCap1.NW_016107750v1 1331949 6 - 1807191 --TGTGTT- i cebCap1.NW_016107750v1 I 3 C 0 s aotNan1.NW_018512383v1 9561 6 + 5963231 --TGTATT- i aotNan1.NW_018512383v1 I 3 C 0 s proCoq1.NW_012136747v1 5065177 6 - 6317780 --TATGTC- i proCoq1.NW_012136747v1 I 23559 C 0 s otoGar3.GL873526 36277102 6 - 42659167 --AACGTC- i otoGar3.GL873526 I 3 C 0 s mm10.chr15 82794002 6 + 104043685 --TATGTT- i mm10.chr15 I 3 C 0 s canFam3.chr10 46075929 9 - 69331447 GATTGGTTC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e micMur3.chr7 5700672 716 + 108171978 I a score=2032918.000000 s hg38.chr22_GL383582v2_alt 65039 117 + 162811 CTGGAAGTCCACATGCAGCAAGTTGCCCAGCCCGGGCAGTGGCAGGGGGCCTGGCGGGTAGCGTGCAGTCCA-GCGTTGGTGCTGCTGCATCAGGTCCACCAGGAGCAGGAAGATGGC s panTro5.chr22 28845400 117 + 37823149 CTGGAAGTCCACATGCAGCAAGTTGCCCAGCCCGGGCAGTGGCAGGGGGCCTGGCGGGTAGCGTGCAGTCCA-GCGTTGGTGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41119728 117 + 50109623 CTGGAAGTCCACATGCAGCAAGTTGCCCAGCCCGGGCAGTGGCAGGGGGCCTGGCGGGTAGTGTGCAGTCCA-GCGTTGGTGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142014 117 + 4464012 CTGGAAGTCCACATGCAGCAAGTTGCCCAGCCCGGGCAGTGGCAGGGGGCCTGGCGGGTAGCGTGCAGTCCA-GTGTTGGTGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638639 118 - 115148730 CTGGAAGTCCACATGCAGCAGGTTGCCCAGCCCAGGCAGTGGCAGGGGGCCTGGTGGGTAGCGTGCAGTCCATTTGTTGGCACCGGTGCATGAGGTCCACCAGGAGCAGGAAGATGGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84253865 117 + 92844088 CTTGAAGTCCACATGCAGCAGGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87598874 117 - 96509753 CTTGAAGTCCACATGCAGCAGGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7090597 116 - 13098629 CTTGAAGTCCACATGCAACAGGTTGCCC-GCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057121 117 - 4483953 CTTGAAGTCCACATGCAGCAGGTTGCCCAGCCCCGGCAGTGGCAGGGGACTTGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24687908 117 + 33263144 CTTGAAGTCCACATGCAACAGGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962081 117 - 14338769 CTTGAAGTCCACATGCAACAGGTTGCCCAGCCCTGGCAGTGGCAGGGGACTTGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905327 117 + 1946073 CTTGAGGTCCACATGCAGCAGGTTGCCCAGCCCAGGGAGTGGCAGGGGACCTGGTGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934385 117 - 2117846 CTGGAAATCCACATGCAGCAGGTTGCCCAGCCCGGGCAGTGGCATGGGGCCAGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8849462 117 - 16357246 CTGGAAGTCCACATGCAGCAGGTTGCCCAGCCCGGGCAGTGGCATGGGGCCAGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1331955 117 - 1807191 CTGGAAGTCCACATGCAGCAGGTTGCCCAGCCCCGGCAGTGGCATGGGGCCAGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGACGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9567 117 + 5963231 CTGGAAGTCCACATGCAGCAGGTTGCCCAGCCCGGGCAGTGGCATGGGGCCAGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5701388 116 + 108171978 CTGGAAGTCCACCTGCAGCAGGTTGCCCAGCCCCGGCAGTGACATGGGGCCTGGCGGGTAGCGTGCAGCCCA-GCGTGGGCGCCGGTGCATGA-GTCCACCAGGAGCAGGAAGATGGC i micMur3.chr7 I 716 C 0 s proCoq1.NW_012136747v1 5065183 117 - 6317780 CTGGAAGTCCACCTGCAGCAGGTTGCCCAGCCCTGGTAGTGACATGGGGCCTGGTGGGTAGCGTGCAGCCCA-GCGTGGGCGCCGGTGCATGAGGTCCACTAGGAGCAGGAATATGGC i proCoq1.NW_012136747v1 C 0 I 168 s otoGar3.GL873526 36277108 117 - 42659167 CTGGAAGTCCACCTGTAGCAGGTTGCCCAGTCCCGGCAGTGGCATGGGGCCTGGTGGGTAGCGTGCAGCCCA-GCGTGGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGACGGT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82794008 117 + 104043685 CTCGAAGTCCACCTGCAGCAGGTTTCCCAGCCCAGGGAATGGCACAGGGCCTGGTGGGTAGCAGGCAGTCCA-GCGCTGGCGCCGGTGCACCAGGTCCACCAGAAGCAGGAAGATGGC i mm10.chr15 C 0 C 0 s canFam3.chr10 46075938 117 - 69331447 CTGGAAGTCCATCTGCAGCAGGTTGCCCACCATGGGCACTGGCGTGGGGCCTGGCGGGTAGCGTGTGGCCCA-GCGCCTGCGCCGGTGCATCAGGTCTACCAGGAGCAGGAAGATGGC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I a score=36137.000000 s hg38.chr22_GL383582v2_alt 65156 3 + 162811 CAC s panTro5.chr22 28845517 3 + 37823149 CAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41119845 3 + 50109623 CAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142131 3 + 4464012 CAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638757 3 - 115148730 CAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84253982 3 + 92844088 TAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87598991 3 - 96509753 TAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7090713 3 - 13098629 TAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057238 3 - 4483953 CAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688025 3 + 33263144 CAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962198 3 - 14338769 TAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905444 3 + 1946073 TAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934502 3 - 2117846 CAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8849579 3 - 16357246 TAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332072 3 - 1807191 CAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9684 3 + 5963231 CAC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5701504 3 + 108171978 CAC i micMur3.chr7 C 0 I 411 s otoGar3.GL873526 36277225 3 - 42659167 CAT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82794125 3 + 104043685 TGT i mm10.chr15 C 0 C 0 s canFam3.chr10 46076055 3 - 69331447 CAC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5065300 168 - 6317780 I a score=329646.000000 s hg38.chr22_GL383582v2_alt 65159 27 + 162811 TGTCACTGCCAGGGGCACCAGTGCATC s panTro5.chr22 28845520 27 + 37823149 TGTCACTGCCAGGGGCACCAGTGCATC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41119848 27 + 50109623 TGTCACTGCCAGGGGCACCAGTGCATC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142134 27 + 4464012 TGTCACTGCCAGGGGCACCAGTGCATC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638760 27 - 115148730 TGTCACTGCCAGGGGCACCAGTGCATC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84253985 27 + 92844088 TGTCATGGCCAGGGGCACCAGTGCATC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87598994 27 - 96509753 TGTCATGGCCAGGGGCACCAGTGCATC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7090716 27 - 13098629 TGTCATGGCCAGGGGCACCAGTGCATC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057241 27 - 4483953 TGTCACAGCCAGGGGCACCAGTGCATC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688028 27 + 33263144 TGTCACGGCCAGGGGCACCAGTGCATC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962201 27 - 14338769 TGTCACGGCCAGGGGCACCAGTGCATC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905447 27 + 1946073 TGTCATGGCCAGGGGCACCAGTGCATC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934505 27 - 2117846 TGTCACAGCCAGGGGCACCAGTGCATC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8849582 27 - 16357246 TGTCACGGCCAGGGGCACCAGTGCATC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332075 27 - 1807191 TGTCACAGCCAGGGGCACCAGTGCATC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9687 27 + 5963231 TGTCACAGCCAGGGGCACCAGTACATC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36277228 27 - 42659167 GGCCAAGGCCAGAGTTGTCAGCACATC i otoGar3.GL873526 C 0 I 9 s mm10.chr15 82794128 27 + 104043685 GAATATGACCACAGCCCATAAGTCATC i mm10.chr15 C 0 I 9 s canFam3.chr10 46076058 27 - 69331447 GGCTACGGCCAGGGGCCCCAGCGTGTC i canFam3.chr10 C 0 I 9 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5065300 168 - 6317780 I e micMur3.chr7 5701507 411 + 108171978 I a score=1528378.000000 s hg38.chr22_GL383582v2_alt 65186 139 + 162811 CAGCCCCATGGCTGCCTCACTGCCCATTGGGCTCCTCTGGACAC-ACCTGGCACCTCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACA--CCCAGTGCATGACCG----------TTCCCTTATAAAGGGAGCTGATGA s panTro5.chr22 28845547 139 + 37823149 CAGCCCCATGGCTGCCTCACTGCCCATTGGGCTCCTCTGGACAC-ACCTGGCACCTCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACA--CCCAGTGCATGACCG----------TTCCCTTATAAAGGGAGCTGATGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41119875 139 + 50109623 CAGCCCCATGGCTGCCTCACTGCCCATTGGGCTCCTCTGGACAC-ACCTGGCACCTCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACA--CCCAGTGCATGACCG----------TTCCCTTATAAAGGGAGCTGATGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142161 138 + 4464012 CAG-CCCATGGCTGCCTTACTGCCCACTGGGCTCCTCTGGACAC-ACCTGGCACCTCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACA--CCAAGTGCATGACCG----------TTCCCTTATAAAGGGAGCTGATGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638787 137 - 115148730 CAGCCCCATGGCTGCCTCACTGCCCACTGGGCTCCTCTGGACAC-ACCTGGCACCCCCACCCCACCAGGCACAGAG----GACCAGGCAGGACA--CTCAGCACA--CCGAGTGCATGACCG----------TTCCCTTATAAAGGCAGCTGATGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254012 139 + 92844088 CAGCCCCATGACTGCCTTGCTGCCCACTGGGCTCCTCTAGACAC-ACCTGGCTCCCCCACCCCACCAGCCACAGAG----GACCAGGCAGGACACTCTCAGCACA--TGAAGTGCATGATCA----------TTCCCTTATAAAGGAAACTGATCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599021 139 - 96509753 CAGCCCCATGACTGCCTTGCTGCCCACTGGGCTCCTCTAGACAC-ACCTGGCTCCCCCACCCCACCAGCCACAGAG----GACCAGGCAGGACACTCTCAGCACA--TGAAGTGCATGATCA----------TTCCCTTATAAAGGAAACTGATCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7090743 139 - 13098629 CAGCCCCATGACTGCCTTGCTGCCCACTGGGCTCCTCTAGACAC-ACCTGGCTCCCCCACCCCACCAGCCACAGAG----GACCAGGCAAGACACTCTCAGCACA--TGAAGTGCATGATCA----------TTCCCTTATAAAGGAAACTGATCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057268 139 - 4483953 CAGCCCCATGACTGCCTTGCTGCCCACTGGGCTCCTCTAGACAC-ACCTGGCTCCCCCACCCCACCAGCCACAGAG----GACCAGGCAGGACACTCTCAGCACA--TGAAGTGCATGATCA----------TTCCCTTATAAAGGAAACTGATCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688055 139 + 33263144 CAGCCCCATGACTGCCTTGCTGCCCACTGGGCTCCTCTAGACAC-ACCTGGCTCCCCCACCCCACCAGCCACAGAG----GACCAGGCAGGACACTCTCAGCACA--TGAAGTGCATGATCA----------TTCCCTTATAAAGGAAACTGATCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962228 139 - 14338769 CAGCCCCATGACTGCCTTGCTGCCCACTGGGCTCCTCTAGACAC-ACCTGGCTCCCCCACCCCACCAGCCACAGAG----GACCAGGCAGGACACTCTCAGCACA--TGAAGTGCATGATCA----------TTCCCTTATAAAGGAAACTGATCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905474 139 + 1946073 CAGCCCCATGACTGCCTTGCTGCCCACTGGGCTCCTCTAGACAC-ACCTGGCACCCCCACCCCACCAGCCACAGAG----GACGAGGCAGGACACTCTCAGCACA--TGAAGTGCATGATCA----------TTCCCTTATAAAGGAAGCTGATCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934532 139 - 2117846 CAGTCCCATGGCTGCCTTGCTGCCCACTGAACTCCTCTGGACAC-ACCTGGCACCCCCACCCCACCAGGCACAGAG----GACCAAGCAGGATACTCTCAGCATA--CCGAGTGTGTGACTG----------TTCCCTTATAAAGGGAGCTGATGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8849609 139 - 16357246 CAGTCCCATGGCTGCCTCGCTGCCCACTGAGCTCCTCTGGACAC-ACTTGGCACCCCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACA--CTGAGTGTGTGACTG----------TTCCCTTATAAAGGGAGCTGATGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332102 138 - 1807191 CAGCCCCATGGCTGCCTCGCTGCCCACTGAGCT-CTCTGGACAC-ACTTGGCACCCCCACCCCACCAGGCACAGAG----GACCAGACAGGACACTCTCAGCACG--CCGAGTGTGTGACTG----------TTCCCTTATAAAGGGAGCTGATGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9714 136 + 5963231 CAGCCCCATGGCTGCCTCGCTGCCCACTGAGCTCCTCTGGACAC-ACCTGGCACCCTCACCCCACCAGGCACAGAG----GACCAGGCAGGACA--CTCAGCACA--CTGAGTG-GTGACTG----------TTCCCTTATAAAGGGAGCTGATGA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36277264 146 - 42659167 CAGCCCCATGTCTGC----CTGTCCACTGGGCTCCTGTGGTAACAACCTGG--CTGCCACCCCACCAGGCACCTAG----ACCTGGGTAGGACCCTCCTGGCACACTCTGAGTGCCAGCCCAGTCTGTGCTCTTCCTTTATGAAGAGAGCTGACTC i otoGar3.GL873526 I 9 C 0 s mm10.chr15 82794164 124 + 104043685 CAGCCCCATGGCTGCCCTACTGCTT-CCAGGCTTTTGAAGGAAT-ACTCGTT------------CCAGAAACTTAG----AATCAGGAAAGATCCTCTTATGA----TGGACTGGGAACCTG----------GTCCCTTATAAAGAGGGAGGAGGG i mm10.chr15 I 9 I 6 s canFam3.chr10 46076094 150 - 69331447 CAGCCCCATAGCTGTCTCAGTGCCCGCTGGGCTCGTG-GGGCAC-GCCGGTGTCCCTCACCACACCAGGGACCTGGGGCTGGCCAGCCAGGGTGCTCTCCCCGCA--CTGTCCGCTCAACCGGCCTGGCC--TCACTTTCTAAAGGGAGCTGAGAC i canFam3.chr10 I 9 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5065300 168 - 6317780 I e micMur3.chr7 5701507 411 + 108171978 I a score=191475.000000 s hg38.chr22_GL383582v2_alt 65325 12 + 162811 TGGCCTTTGCCT s panTro5.chr22 28845686 12 + 37823149 TGGCCTTTGCCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120014 12 + 50109623 TGGCCTTTGCCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142299 12 + 4464012 TGGCCTTTGCCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638924 12 - 115148730 TGGCCTTTGCCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254151 12 + 92844088 TGGCCTTTGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599160 12 - 96509753 TGGCCTTTGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7090882 12 - 13098629 TGGCCTTTGCCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057407 12 - 4483953 TGGCCTTTGCCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688194 12 + 33263144 TGGCCTTTGCCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962367 12 - 14338769 TGGCCTTTGCCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905613 12 + 1946073 TGGCCTTTGCCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934671 12 - 2117846 TGGCCTTTGCCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8849748 12 - 16357246 TGGCCTTTGCCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332240 12 - 1807191 TGGCCTTTGCCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9850 12 + 5963231 TGGCCTTTGCCC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5065468 12 - 6317780 TGGCCTTTGCCC i proCoq1.NW_012136747v1 I 168 C 0 s otoGar3.GL873526 36277410 12 - 42659167 TGGCCTTTGGCC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82794294 12 + 104043685 TGCACTTTGTTC i mm10.chr15 I 6 C 0 s canFam3.chr10 46076244 12 - 69331447 CGGCCTTTGCCC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e micMur3.chr7 5701507 411 + 108171978 I a score=98357.000000 s hg38.chr22_GL383582v2_alt 65337 7 + 162811 TCTGCTG s panTro5.chr22 28845698 7 + 37823149 TCTGCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120026 7 + 50109623 TCTGCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142311 7 + 4464012 TCTGCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638936 7 - 115148730 TCTGCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254163 7 + 92844088 TCTGCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599172 7 - 96509753 TCTGCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7090894 7 - 13098629 TCTGCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057419 7 - 4483953 TCTGCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688206 7 + 33263144 TCTGCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962379 7 - 14338769 TCTGCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905625 7 + 1946073 TCCGCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934683 7 - 2117846 TCTGCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8849760 7 - 16357246 TCTGCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332252 7 - 1807191 TCTGCTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9862 7 + 5963231 TCTGCTG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5065480 7 - 6317780 TGTGCTA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36277422 7 - 42659167 CCTGCTG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82794306 7 + 104043685 TCTGCCT i mm10.chr15 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076256 0 - 69331447 C e micMur3.chr7 5701507 411 + 108171978 I a score=735488.000000 s hg38.chr22_GL383582v2_alt 65344 54 + 162811 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------T-GGGTGCAGG----GTCAGGCCAGG s panTro5.chr22 28845705 54 + 37823149 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------T-GGGTGCAGG----GTCAGGCCAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120033 54 + 50109623 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------T-GGGTGCAGG----GTCAGGCCAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142318 53 + 4464012 TGAGCCAACATGCTGTGTTGAC---TGCGCTG-CAG--------T-GGGTGCAGG----GTCAGGCCAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638943 54 - 115148730 TGAGCCAACCTACTGTGTTGAC---TGTGCTGCCAG--------T-GGGTGCAGG----GTCAGGCCAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254170 54 + 92844088 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------T-GGGTGCAGG----GTTAGGCCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599179 54 - 96509753 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------T-GGGTGCAGG----GTTAGGCCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7090901 54 - 13098629 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------T-GGGTGCAGG----GTTAGGCCAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057426 54 - 4483953 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------T-GGGTGCAGG----GTTAGGCCAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688213 54 + 33263144 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------T-GGGTGCAGG----GTCAGGCCAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962386 54 - 14338769 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------T-GGGTGCAGG----GTTAGGCCAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905632 54 + 1946073 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------T-GGGTGCAGA----GTCAGGCCAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934690 54 - 2117846 TGAGCCAAACTGCTGTGTTAAC---TGTGCTGCCAG--------T-GGGTAGAGG----GTCAGGCTAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8849767 54 - 16357246 TGAGCCAACCTGCTCTGTTGAC---TGTGCTGCCAG--------T-GGGTGCAGG----GTCAGGCCAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332259 55 - 1807191 TGAGCCAAACCGCTGTGCTGAC---TGTGCTGCCAG--------TGGGGTGCAGG----GTCAGGCTAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9869 54 + 5963231 TGAGCCAAACTGCTGTGTTGAC---TGTGCTGCCAG--------T-GGGTGCAGG----GTCAGGCTAGG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5065487 54 - 6317780 TCAGCCAATGTGTTGTGTTAAC---TGTGCTGCCAG--------A-GGGTTCAGG----GCCAGGGCAGG i proCoq1.NW_012136747v1 C 0 I 486 s otoGar3.GL873526 36277429 54 - 42659167 TGAGGCAACATGTTGTGTTGAC---TGTGCTGCCAG--------A-GGGTACAGA----GCCAGGGTAGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82794313 69 + 104043685 TGAGCCAAGTAGCTGTGTTAATTAATGTTCAAACAGAGCCTATAT-GGGGGAAGGGGGTGTCAGAAAAAT i mm10.chr15 C 0 C 0 s canFam3.chr10 46076256 54 - 69331447 TGAGTCAATATGTCAGGGCGAC---AGTGCTGCCAG--------A-GGGTGCAGG----GAGGGGTCAGG i canFam3.chr10 C 0 I 1 e dasNov3.JH570235 50157 762 + 1056298 I e micMur3.chr7 5701507 411 + 108171978 I a score=20667.000000 s hg38.chr22_GL383582v2_alt 65398 2 + 162811 GC s panTro5.chr22 28845759 2 + 37823149 GC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120087 2 + 50109623 GC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142371 2 + 4464012 GC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638997 2 - 115148730 GC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254224 2 + 92844088 GT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599233 2 - 96509753 GT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7090955 2 - 13098629 GT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057480 2 - 4483953 GT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688267 2 + 33263144 GT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962440 2 - 14338769 GT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905686 2 + 1946073 GT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934744 2 - 2117846 GC i calJac3.chrUn_GL286373 C 0 T 17713 s saiBol1.JH378157 8849821 2 - 16357246 GC i saiBol1.JH378157 C 0 T 16183 s cebCap1.NW_016107750v1 1332314 2 - 1807191 GC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9923 2 + 5963231 GC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36277483 2 - 42659167 GC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82794382 1 + 104043685 -C i mm10.chr15 C 0 I 1 s canFam3.chr10 46076311 2 - 69331447 GC i canFam3.chr10 I 1 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5065541 486 - 6317780 I e micMur3.chr7 5701507 411 + 108171978 I a score=437761.000000 s hg38.chr22_GL383582v2_alt 65400 63 + 162811 ------------GGGTATGGGCTGC-TGCAGAGGTCCT-TGCCC---CTGCTCGCTCTAGTTGCCTACCCAGATTAGGGT s panTro5.chr22 28845761 63 + 37823149 ------------GGGTATGGGCTGC-TGCAGAGGTCCT-TGCCC---CTGCTCGCTCTAGTTGCCTACCCAGATTAGGGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120089 63 + 50109623 ------------GGGTATGGGCTGC-TGCAGAGGTCCT-TGCCC---CTGCTCGCTCTAGTTGCCTACCCAGATTAGGGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142373 63 + 4464012 ------------GGGTATGGGCTGC-TGCAGAGGTCCT-TGCCC---CTGCTCGCTCTAGTTGCCTACCCAGGTTAGGGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106638999 63 - 115148730 ------------GGGTAAGGGCTGC-TCCAGAGGTCCT-TGCCC---CTGCTCGCTCTAGTTGCCTACCCAGGTTAGGGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254226 66 + 92844088 ------------GGGTAGGGGCTGC-TCCAGAGGTCCT-TGACCCTGCTGCTTGCTCTTGGTGCCTACCCAGGTTAGGGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599235 66 - 96509753 ------------GGGTAGGGGCTGC-TCCAGAGGTCCT-TGACCCTGCTGCTTGCTCTTGGTGCCTACCCAGGTTAGGGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7090957 66 - 13098629 ------------GGGTAGGGGCTGC-TCCAGAGGTCCT-TGACCCTGCTGCTTGCTCTTGGTGCCTACCCAGGTTAGGGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057482 66 - 4483953 ------------GGGTAGGGGCTGC-TCCAGAGGTCCT-TGACCCTGCTGCTTGCTCTTGGTGCCTACCCAGGTTAGGGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688269 66 + 33263144 ------------GGGTAGGGGCTGC-TCCAGAGGTCCT-TGACCCTGCTGCTTGCTCGTGGTGCCTACCCAGGTTAGGGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962442 66 - 14338769 ------------GGGTAGGGGCTGC-TCCAGAGGTCCT-TGACCCTGCTGCTTGCTCTTGGTGCCTACCCAGGTTAGGGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905688 66 + 1946073 ------------GGGTAGTGGCTGC-TCCAGAGGTCCT-TGGCCCTGCTGCTCACTCTTGGTGCCTACCCAGGTTAGGGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1917033 53 - 2117846 ------------AGGTAGGGGCCGC-ACCAAAGGTCCT-TGTCCCAGCTGTT-------------TACCCAGGGTAGGGT i calJac3.chrUn_GL286373 T 17713 C 0 s saiBol1.JH378157 8833640 53 - 16357246 ------------AGGTACGGGCTGC-ACCAAAGGTCCT-TGTCCCAGCTGTT-------------TACCCAGGGTAGGGT i saiBol1.JH378157 T 16183 I 16130 s otoGar3.GL873526 36277485 55 - 42659167 ------------AAGTGTGGGTGAAGTCCAGAGGTCCT-TACCCCA-CTGCCTTCCCCAATTGCCTTCC----------- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82794384 58 + 104043685 ------------AGGGAAAGTCAAC-ATCAGAGGTTCC-TGCCCTTTCTTCTTTCCTGTGGTGCTTATCCAG-------- i mm10.chr15 I 1 C 0 s canFam3.chr10 46076313 77 - 69331447 AGGGGAGTTCAGGTGCAGGGGTGAC-CACAGGAGTCCTGTGCCC--GCTGCACTCTCCGGGTGTTTACCCACAGTAGTGG i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 9925 0 + 5963231 C e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5065541 486 - 6317780 I e micMur3.chr7 5701507 411 + 108171978 I e cebCap1.NW_016107750v1 1332316 0 - 1807191 C a score=27023.000000 s hg38.chr22_GL383582v2_alt 65463 4 + 162811 GGTG--- s panTro5.chr22 28845824 4 + 37823149 GGTG--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120152 4 + 50109623 GGTG--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142436 4 + 4464012 GGTG--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639062 4 - 115148730 GGTG--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254292 4 + 92844088 GATG--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599301 4 - 96509753 GATG--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091023 4 - 13098629 GATG--- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057548 4 - 4483953 GATG--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688335 4 + 33263144 AATG--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962508 4 - 14338769 GATG--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905754 4 + 1946073 GATG--- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1917086 4 - 2117846 GGTG--- i calJac3.chrUn_GL286373 C 0 I 17656 s saiBol1.JH378157 8849823 4 - 16357246 AGTG--- i saiBol1.JH378157 I 16130 C 0 s cebCap1.NW_016107750v1 1332316 4 - 1807191 AGTG--- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9925 4 + 5963231 AGTG--- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36277540 2 - 42659167 --TG--- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46076390 7 - 69331447 GGTCAGG i canFam3.chr10 C 0 C 0 e mm10.chr15 82794442 0 + 104043685 C e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5065541 486 - 6317780 I e micMur3.chr7 5701507 411 + 108171978 I a score=120065.000000 s hg38.chr22_GL383582v2_alt 65467 13 + 162811 GGCGAGAGGTGGC s panTro5.chr22 28845828 13 + 37823149 GGCGAGAGGTGGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120156 13 + 50109623 GGCGAGAGGTGGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142440 13 + 4464012 GGCGAGAGGTGGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639066 13 - 115148730 GGTGAGAGGTGGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254296 13 + 92844088 GGTGAGAAGTGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599305 13 - 96509753 GGTGAGAAGTGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091027 13 - 13098629 GGTGAGAAGTGAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057552 13 - 4483953 GGTGAGAAGTGAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688339 13 + 33263144 GGTGAGAAGTGAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962512 13 - 14338769 GGTGAGAAGTGAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905758 13 + 1946073 GGTGAGAAGTGGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934746 13 - 2117846 AGTGAGAGGCAGC i calJac3.chrUn_GL286373 I 17656 C 0 s saiBol1.JH378157 8849827 13 - 16357246 AGTGACAGGCAGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332320 13 - 1807191 AGTGACAGGCAGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9929 13 + 5963231 AGTGTGAGGCAGC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36277542 13 - 42659167 GGGTAGGGGAGGC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82794442 9 + 104043685 ----GGGAGTGGC i mm10.chr15 C 0 C 0 s canFam3.chr10 46076397 13 - 69331447 GGCGGGGAGAGGC i canFam3.chr10 C 0 I 2001 e dasNov3.JH570235 50157 762 + 1056298 I e proCoq1.NW_012136747v1 5065541 486 - 6317780 I e micMur3.chr7 5701507 411 + 108171978 I a score=264917.000000 s hg38.chr22_GL383582v2_alt 65480 30 + 162811 CTGGCATGGGAGCTCCACCCA-AGTTGGAGG s panTro5.chr22 28845841 30 + 37823149 CTGGCATGGGAGCTCCACCCA-AGTTGGAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120169 30 + 50109623 CTGGCATGGGAGCTCCACCCA-AGTTGGAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142453 30 + 4464012 CTGGCATGGGAGCTCCACCCA-AGTTGGAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639079 30 - 115148730 CTGGCGTGAGAGCTCCACCCA-AGCTGGAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254309 28 + 92844088 CTGGCAT--GAGCTCCACCCA-AGCTGGCGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599318 28 - 96509753 CTGGCAT--GAGCTCCACCCA-AGCTGGCGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091040 28 - 13098629 CTGGCAT--GAGCTCCACCCA-AGCTGGCGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057565 28 - 4483953 CTGGCAT--GAGCTCCACCCA-AGCTGGCGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688352 30 + 33263144 CTGGCATGAGAGCTCCACCCA-AGCTGGCGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962525 28 - 14338769 CTGACAT--GAGCTCCACCCA-AGCTGGCGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905771 30 + 1946073 CTGGCATGAGAGCTCCACCCA-AGCTGGAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934759 30 - 2117846 CTGGCATGAGGGCTCCACCCA-GGCTGGAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8849840 30 - 16357246 CTGGCATGAGAGCTCCAACCA-AGCTGGAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332333 30 - 1807191 CTGGCATGAGAGCTCCACCCA-AGCTGGAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9942 30 + 5963231 CCGGCATGAGAGCTCCACCCA-AGCTGGAGG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36277555 31 - 42659167 CTGGAGGGAATGCTCTACTCAGGGCTGGATG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82794451 25 + 104043685 AC----TGATAGCTCCACAGA-GAATTGC-A i mm10.chr15 C 0 C 0 e dasNov3.JH570235 50157 762 + 1056298 I e canFam3.chr10 46076410 2001 - 69331447 I e proCoq1.NW_012136747v1 5065541 486 - 6317780 I e micMur3.chr7 5701507 411 + 108171978 I a score=785953.000000 s hg38.chr22_GL383582v2_alt 65510 87 + 162811 TATGGATTGTACTGGGTGCTGGGCTGTGTACTGG-----GAGCATGGTGGTAAGGCTGTGAGT----CAATGCCCCAACGTAATGATGACCACGGG s panTro5.chr22 28845871 87 + 37823149 TATGGATTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGTGGTAAGGCTGTGAGT----CAATGCCCCAACGTAATGATGACCACGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120199 87 + 50109623 TATGGATTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGTGGTAAGGCTGTGAGT----CAATGCCCCAACGTAATGATGACCACGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142483 87 + 4464012 TATGGATTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGTGATAAGGCTGTGAGT----CAATGCCCCAATGTAATGACCACCACGAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639109 92 - 115148730 TATGGGTTGTACTGGGTACTGAGCTGTGTACTGGGTGCTGAGCATGGTGGGAAGGCTGTGAGT----CAATGCCCCAACGTAATGATGACCATGAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254337 91 + 92844088 TATGGGTTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATAGCGGGAAGGCTGTGAGTGGACCAATGCCCCACTGTAATCACGACCTTGAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599346 91 - 96509753 TATGGGTTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGCGGAAAGGCTGTGAGTGGACCAATGCCCCACTGTAATCACGACCTTGAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091068 91 - 13098629 TATGGGTTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGCGGAAAGGCTGTGAGTGGACCAATGCCCCACTGTAATCACGACCTTGAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057593 91 - 4483953 TATGGGTTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGCGGGAAGGCTGTGAGTGGACCAATGCCCCACCGTAATCACGACCTTGAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688382 91 + 33263144 TATGGGTTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGTGGGAAGGCTGTGAGTGGACCAATGCCCCACCGTAATCATGACCTTGAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962553 91 - 14338769 TATGGGTTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGCGGGAAGGTTGTGAGTGGACCAATGCCCCACCGTAATCACGACCTTGAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905801 91 + 1946073 CATGGGTTGTACCGGGTGCTGAGCTGTGTATTGG-----GAGCATGGCGGGAAGGCTGTGAGTGGACCAATGCCCCACCGTAATCATGACCTTGAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934789 91 - 2117846 TATGGGTTGTACTGGATCCTGAGCTGTGTCCTGA-----GAACATGGTGGGAAGGTAGCCAGTGGGCCAGTACCCCAGCATACTCAAGACCATCAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8849870 91 - 16357246 TATGGGTTGTACTGGGTCCTGAGCCGTGTACTGG-----GAACATGGTTGGAAGGCAGCCAGTGGGCCAGTGCCCCAACGTACTCATGACCATCAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332363 91 - 1807191 TATGGGTTGTACTGGGTCCTGAGCTGTGTACTGG-----GAACATGGTGGGAAGGCAGCCAGTGGGCCAGTGCCCCAACGTATTCAAGACCATCAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 9972 91 + 5963231 TATGGGTTGTACTGGGTCCTCAGCTGTGTACTGG-----GAACATGGTGGGAAGGCAGCCAGTGGGCCAGTGCCCCAACATACTGAAGACCATCAG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36277586 85 - 42659167 TCACAGTTGTTCTTGGTCCTGGGATGTGCACAGG-----GA----TGTGGGAATAGAAGGGTTGTGCCTCTGCTCCAACGTGCTTATAGCCAAG-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82794476 75 + 104043685 TAGTGGTTATATTGGGT-------TGGACACTGT-----AAGCACAGCGGGCACGTAGCCA-TGGACC-CTGCCTCAGGGTG----CAACGGT--- i mm10.chr15 C 0 C 0 s dasNov3.JH570235 50919 65 + 1056298 TATCAGCTGTGCTGGGTGCTGGGCTGGGGGGCGG-----GAAGACAGCGGGAGG----------------TGCCCGGATCCAAAGG---------- i dasNov3.JH570235 I 762 C 0 e canFam3.chr10 46076410 2001 - 69331447 I e proCoq1.NW_012136747v1 5065541 486 - 6317780 I e micMur3.chr7 5701507 411 + 108171978 I a score=1151448.000000 s hg38.chr22_GL383582v2_alt 65597 96 + 162811 GAGTAGGAAGGTAACATAG-CTGACATGACAAGCCAGCAG---------TGCCATGAGGGTCCATGGGGACGTTGTCCCAGGCTGGAACAGGACTTTCTGGGAAGG s panTro5.chr22 28845958 96 + 37823149 GAGTAGGAAGGTAACATAG-CTGATATGACAAGCCAGGAG---------TGCCATGAGGGTCCATGGGGACGTTGTCCCAGGCTGGAACAGGACTTTCTGGGAAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120286 96 + 50109623 GAGTAGGAAGGTAACATAG-CTGACATGACAAGCCAGGAG---------TGCCATGAGGGTCCATGGGGACGTTGTCCCAGGCTGGAACAGGACTTTCTGGGAAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142570 95 + 4464012 GAGTAGTAAGGTAACATAG-CTGACATGACAAGCCAGCAG---------TGCCATGAGGGT-CATGGGGACGTTGTCCCAGGCTGGAACAGGACTTTCTGGGAAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639201 95 - 115148730 GAGAAGGAAGGTAACATAG-CTGACATGACAAGCCAGCAG---------TGCCATGAAGGT-CATGGGGACATTGTCCCAGGCTGGAACAGGACTTTCTGGGAAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254428 95 + 92844088 GAGCAGGAAGGTAACATAG-CTGACATGAGAAGCCAGTGG---------TACCATGAGGGT-CATGGGGACTCCGCCCCAGGCTGGAACAGGACTTTCTGGGAAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599437 95 - 96509753 GAGCAGGAAGGTAACATAG-CTGACATGAGAAGCCAGCGG---------TACCATGAGGGT-CATGGGGACTCCGCCCCAGGCTGGAACAGGACTTTCTGGGAAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091159 95 - 13098629 GAGCAGGAAGGTAACATAG-CTGACATGAGAAGCCAGCGG---------TACCATGAGGGT-CATGGGGACTCCGCCCCAGGCTGGAACAGGACTTTCTGGGAAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057684 95 - 4483953 GAGCAGGAAGGTAACATAG-CTGACATGAGAAGCCAGTGG---------TACCATGAGGGT-CATGGGGACTCCGCCCCAGGCTGGAACAGGACTTTCTGGGAAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688473 95 + 33263144 GAGCAGGAAGGTAACATAG-CTGACATGAGAAGCCAGCGG---------TACCATGAGGGT-CATGGGGACTCTGCCCCAGGCTGGAACAGGACTTTCTGTGAAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962644 95 - 14338769 GAGCAGGAAGGTAACATAG-CTGACATGAGAAGCCAGCGG---------TACCATGAGGGT-CATGGGGACTCTGCCCCAGGCTGGAACAGGACTTTCTGGGAAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905892 95 + 1946073 GAGCAGGAAGGTAACATAG-CTGACATGAGAAGCCAGTGG---------TGCCATGAGGGT-CATGGGGACTCCGCCTCAGGCTGGAACAGGACTTTCTGGGAAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934880 95 - 2117846 AAGTAGGAAGGTAACATAG-CTGACATGCCAAGCCAGCAG---------TGCCATGAGGGT-CATGGGGACATTGCCCCAGGCTGGAACAGAACTATCTGGGAAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8849961 95 - 16357246 AAGTAGGAAGGTAACATTG-CTGACATGCCAAGCCAGCAG---------TGACATGAGGGC-CATGGGGACATTGCCCCAGGCTGGAACAGGACTTTCTAGGAAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332454 95 - 1807191 AAGTAGGAAGGTAACATAG-CTGACATGCCAAGCCAGCGG---------TGCCACGAGGGT-CATGGGGACATTGCCCCAAGCTGGAACGGGACTTTCTAGGAAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 10063 95 + 5963231 AAGTAGGAAAGTAACATAG-CTGACATGCCAAGCCAGCAG---------AGCCATGAGGGT-CATGGGGACATTGCCCCAGGCTGGAACAGGACTTTCTGGGAAGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5701918 95 + 108171978 GAGTAGGAAGGTCAGATAG-CTAACATGACAAGCCAGTAG---------TGCTTCAAGGGT-CATGAGGACATTTGCTCAGGCTTGAAGAGGACTTTCTGGGAAGG i micMur3.chr7 I 411 I 1289 s otoGar3.GL873526 36277671 94 - 42659167 ATTTAGAAAGGTCA-ATAG-GTAACATGCCAAGACAGCAG---------TGCTTTGTGGGT-CATGGGGACCTTTCTTTAGTCTGAAACAGGATTTCCTGGGAAGA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82794551 80 + 104043685 --------------CATAGACTAATTTGCCACATGACCAG---------AGATCCGAGGGG-ACCGAAGACATTGTCTCAGAATGGAACAAGGCCTTTTGGAGG-- i mm10.chr15 C 0 C 0 s dasNov3.JH570235 50984 97 + 1056298 GCTCAGGAAAA-GCCAGAG-CTGCCACG-CAAGCCAGCAGCACAGGGACTGCTTTGAGGGT---TGGGGACCTTGTCGCAGGCTGGAGCAGGACTCTGCGGGG--- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46076410 2001 - 69331447 I e proCoq1.NW_012136747v1 5065541 486 - 6317780 I a score=1303745.000000 s hg38.chr22_GL383582v2_alt 65693 124 + 162811 ATTCAT---GGAGAA---CTTTGTCTAGC--TGACTGAGGGG-CTGCCTAG-CACTGTAGGCCACGGCA--CTGGCAGTGGGACCAACCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGCAGCAGGAGGC s panTro5.chr22 28846054 124 + 37823149 ATTCAT---GGAGAA---CTTTGTCTAGC--TGACTGAGGGG-CTGCCTAG-CACTGTAGGCCACGGCA--CTGGCAGTGGGACCAACCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGCAGCAGGAGGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120382 124 + 50109623 ATTCAT---GGAGAA---CTTTGTCTAGC--TGACTGAGGGG-CTGCCTAG-CACTGTAGGCCACGGCA--CTGGCAGTGGGACCAACCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGCAGCAGGAGGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142665 124 + 4464012 ATTCAT---GGAGAA---CTTCGTCTAGC--TAACTGAGGGG-CTGCCTAG-CACTGTAGGCCATGGCA--CTGGCAGTGGGACCAACCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGCAGCAGGAGGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639296 124 - 115148730 ATTCAT---GGAGAA---TTTTGTCTAGC--TGACTGAGGGG-CTGCCTAG-CACTATAGGCCATGGCA--CTGGCAGTGGGACCAACCTACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGTAGCAGGAGAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254523 124 + 92844088 ATTCAT---GGAGAA---CTTTGTCTAGC--TGACTGAGGGG-CTGCCTAG-CACTGTAGGCCACAGCA--CTGGCAGTGGGAAAAAGCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGCAGCAGGAGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599532 124 - 96509753 ATTCAT---GGAGAA---CTTTGTCTAGC--TGACTGAGGGG-CTGCCTAG-CACTGTAGGCCACAGCA--CTGGCAGTGGGAAAAAGCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGCAGCAGGAGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091254 124 - 13098629 ATTCAT---GGAGAA---CTTTGTCTAGC--TGACTGAGGGG-CTGCCTAG-CACTGTAGGCCACAGCA--CTGGCAGTGGGAAAAAGCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGCAGCAGGAGGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057779 124 - 4483953 ATTCAT---GGAGAA---CTTTGTCTAGC--TGACTGAGGGG-CTGCCTAG-CACTGTAGGCCACAGCA--CTGACAGTGGGAAAAAGCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGCAGCAGGAGGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688568 124 + 33263144 ATTCAT---GGAGAA---CTTTGTCTAGC--TGACTGAGGGG-CTGCCTAG-CACCGTAGGCCACAGCA--CTGGCAGTGGGAAAAAGCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGCAGCAGGAGGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962739 124 - 14338769 ATTCAT---GGAGAA---CTTTGTCTAGC--TGACTGAGGGG-CTGCCTAG-CACTGTAGGCCACAGCA--CTGACAGTGGGAAAAAGCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGCAGCAGGAGGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 905987 124 + 1946073 ATTCAT---GGAGAA---CTTTGTCTAGC--TGACTGAGGGG-CTGCCTAG-CACTGTACACCACAGCA--CTGGCAGTGGGAAAAAGCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGCAGCAGGAGGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1934975 129 - 2117846 ATTTCTGGAGGAGAA---CTTTGAGTGGCAGAGACTGAGGGG-CTGCCTAG-CACTGTAGGCCATGGTA--CTGGCAGTGGGACCAATGCACCCTTGGAATTTCTTGTGCAGGTGGC--CTGAG----------GGGCCACAGGAGGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8850056 126 - 16357246 ATTCCT---GAAGAA---CTTTGAGTGGCAGAGACTGAGGGG-CTGCCTAG-CACTGTAGGTCATGGCA--CTGGCAGTGGGACTAACACACCCTTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGCCACAGGAAGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332549 129 - 1807191 ATTCCTGGAGGAGAA---CTTTGAGTGGCAGAGACTGAGGGG-CTGCCTAG-CACTGTAGGCCATGGCA--CTGGCAGTGGGACCAACGTACCCTTGGAATTTCCTGTGCAGGTGGC--CCGAG----------GGGCCACAGGAAGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 10158 126 + 5963231 ATTCCT---GGAGAA---CTTTGAGTGGCAGAGACTGGGGGG-CTGCCTAG-CACTGTAGGCCACGGCA--CTGGCAGTGGAACCAACGCACCCTTGGAATTTCCTGTGCAGGTGGC--CTGAG----------GGGCCACAGGATGC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36277765 129 - 42659167 CTTCTT---GGAGGATGGCTTTGGCTGGCAGAAACC-ATAGA-CTGGTAAGTCATTGCAGGCCAAGGCC--CTGGCAGTGGGACCAAGGGAACACTGGGACATCTTGTGCAGGTAGG--GTGAT----------GGGCAGAGGGAGGA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82794631 124 + 104043685 CTTCAG---GGAACA---CTT-GGCTAGT--AGGATATGAGGTCTGACTGA-CACTATCAGT--GGGCA--CTATCACTATGCAGCAATGGCCACTGAAGTGGCTTATGTGGCTAGCAGATGAG----------GGTGAGGGAGAGGC i mm10.chr15 C 0 I 12113 s dasNov3.JH570235 51081 113 + 1056298 ------------------CTTTG--------CGGAGGAGGGT-CT---TGG-CACTGCAGGCCAAGGCGACCTGGCAGTGGGAGCTGG-TGCCACTG-AATATCCCGTGCAGAGGGG--GTGAGGAAGGGCAAAGGGCAGCGGGAGGG i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46076410 2001 - 69331447 I e proCoq1.NW_012136747v1 5065541 486 - 6317780 I e micMur3.chr7 5702013 1289 + 108171978 I a score=378501.000000 s hg38.chr22_GL383582v2_alt 65817 31 + 162811 CAGCAGCTGGAGCCTGGGTCTTTTCAGGTCT s panTro5.chr22 28846178 31 + 37823149 CAGCAGCTGGAGCCTGGGTCTTTTCAGGTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120506 31 + 50109623 CAGCAGCTGGAGCCTGGGTCTTTTCAGGTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142789 31 + 4464012 CAGCAGCTGGAGCCTGGGTCTTTTCAGGTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639420 31 - 115148730 CAGCAGCTGGAGCCTGGGCCTTTTCAGGTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254647 31 + 92844088 CGGCAGCTGGAGCCTAGGTCTTTTCAGGTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599656 31 - 96509753 CGGCAGCTGGAGCCTAGGTCTTTTCAGGTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091378 31 - 13098629 CAGCAGCTGGAGCCTAGGTCTTTTCAGGTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057903 31 - 4483953 CGGCAGCTGGAGCCTAGGTCTTTTCAGGTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688692 31 + 33263144 TGGCAGCTGGAGCCTAGGTCTTTTCAGGTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962863 31 - 14338769 CGGCAGCTGGAGCCTAGGTCTTTTCAGGTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 906111 31 + 1946073 CAGCAGCTGGAGCCTAGGTCTTTTCAGGTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1935104 31 - 2117846 TGGCAGCTGGAGCCTGGGTCTTTGCAGGTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8850182 31 - 16357246 TGGCAGCTGGAGCCTGGGTCTTTGCAGGTCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332678 31 - 1807191 TGGCAGCTGGAGCCTGGGTCTTTGCAGGTCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 10284 31 + 5963231 TGGCAGCTGGAGCCTGGGTCTTTGCAGGTCT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36277894 31 - 42659167 CGGTGGCTGGAGCCTGGGGCTTTGCAAGCCT i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51194 31 + 1056298 CGGCAGCTCAAGGCTAGGGGTTTCCAAATCT i dasNov3.JH570235 C 0 I 9 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46076410 2001 - 69331447 I e proCoq1.NW_012136747v1 5065541 486 - 6317780 I e micMur3.chr7 5702013 1289 + 108171978 I a score=1025875.000000 s hg38.chr22_GL383582v2_alt 65848 137 + 162811 GGATGAAGACTGGATCTGGGGAACAAAAGGCAGGGAGAACAGTTTATTTAAAATT----TAAAAA-------TATATATATAt-----tttttagagacaagatcttgctctgttgcccaggctggagtgcagagctgtgatcatagctca-------ct s panTro5.chr22 28846209 137 + 37823149 GGATGAAGACTGGATCTGGGGAACAAAAGGCAGGGAGAACAGTTTATTTAAAATT----TAAAAA--------ATATATATAT----Atttttagagacaagatcttgctctgttgcccaggctggagtgtagagctgtgatcatagctca-------ct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120537 135 + 50109623 GGATGAAGACTGGATCTGGGGAACAAAAGGCAGGGAGAACAGTTTATTT-AAATT----TAAAA---------ATATATATAT----Atttttagagacaagatcttgctctgttgcccaggctggagtgcagagctgtgatcatagctca-------ct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142820 136 + 4464012 GGATGAAGACTGGATCTGGGGAACAAAAGGCAGGGAGAACAGTTTATTTAAAATT----AAAAA---------ATATATATAT----Atttttagagacaagatcttgctctgttgcccaggctggagtgcagagctgtgatcatagctca-------ct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639451 137 - 115148730 GGATGAAGACTGGATCTGGGGAACAGAAGGCAGGGAGAACAGTTTATTTAAAATT----AAAAAAAAT----AATAAAAAttt-----tttttagagacagggtcttgctttgttgcccaggctggagtacagaggtgtgatcatagctc---------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254678 156 + 92844088 GGATGAAGACTGGATCTGGGGAACAAAAGGCAGGGAGAACAGTTTATTTaaaatataaaaaaaaaaaaaaaaattaaaaaGtt----tttttgagagacaggggcttgctctgttgcccacgctggagtgcagaggtgtgatcaaagctcactgcagcct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599687 156 - 96509753 GGATGAAGACTGGATCTGGGGAACAAAAGGCAGGGAGAACAGTTTatttaaaatttaaaaaaaaaaaaaaaaattaaaaaGtt----tttttgagagacaggggcttgctctgttgcccacgctggagtgcagaggtgtgatcaaagctcactgcagcct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091409 154 - 13098629 GGATGAAGACTGGATCTGGGGAACAAAAGGCAGGGAGAACAGTTTATTTaaaatt--aaaaaaaaaaaaaaaattaaaaaGtt----tttttgagagacaggggcttgctctgttgcccacgctggagtgcagaggtgtgatcaaagctcactgcagcct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4057934 153 - 4483953 GGATGAAGACTGGATCTGGGGAACAAAAGGCAGGGAGAACAGTTTATTTaaaatt---aaaaaaaaaaaaaaattaaaaaGtt----tttttgagagacaggggcttgctctgttgcccacgctggagtgcagaggtgtgatcaaagctcactgcagcct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688723 145 + 33263144 GGATGAAGACTGGATCTGGGGAACAAAAGGTAGGGAGAACAGTGTATTTAAAATT----AAAAAAAAA-------AAAAAGtt----tttttgagagacaggggcttgctctgttgcccacgctggagtgcagaggtgtgatcaaagctcactgcagcct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13962894 152 - 14338769 GGATGAAGACTGGATCTGGGGAACAAAAGGCAGGGAGAACAGTTTATTTaaaatt----aaaaaaaaaaaaaattaaaaaGtt----tttttgagagacagtggcttgctctgttgcccacgctggagtgcagaggtgtgatcaaagctcactgcagcct i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 906142 151 + 1946073 GGATGAAGACTGGATCTGGGGAACAAAAGGCAGGGAGAAGAGTTTATTTAAAAT-----ATAAAAAAAAAAAATTAAAAAGtt----tttttgagagacaggggcttgctctgttgcccacgctggcatgcagaggtgtgatcagagctcactgcagcct i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1935135 151 - 2117846 GAATGAAGACTGGATCT-GGGAACAAAAGGTAGGAGGAACAGtttatttaaaatt----taaaaaa----aaattaCGAtttttttttgttttagagacagggtcttgctctgttgcctaggctggagtgcagaggtataatcgtaactccctacagccc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8850213 148 - 16357246 GAATGAAGACTGGATCT-GGGAACAAAAGGTA-----AACAGtttatttaaaatt----taaaaaa-aagaaattatGAttttggtttttgttagagacagggtcttgctctgttgcctaggctggagtgcagaggtatgatcatagctccctacag-cc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332709 150 - 1807191 GAATGAAGACTGGATCT-GAGAACAAAAGGTT-----AGCAGTTTATTTAAAATT----AAAAAAAAAAAAAATTACGAttttgtttttttttagagacagggtcttgctctgttgcctaggctggagtgcagaggtatgatcgtagctccctacagctc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 10315 152 + 5963231 TAATGAAGACTGGATCT-GGGAACAAAAGGTAGGGGAAACAGTTTATTTAAAATT----TTTTTAA---AAAATTATGAttttgtctttttttagagacagggtcttgctctgttgcctaggctggagtgcagaggtatgatcatagctccctacagccc i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36277925 47 - 42659167 GGCTGAGGACTGGATGT-GGGAGTGGGAGGCTGAGTTTTTAGGCCACT---------------------------------------------------------------------------------------------------------------- i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51225 9 + 1056298 I e canFam3.chr10 46076410 2001 - 69331447 I e proCoq1.NW_012136747v1 5065541 486 - 6317780 I e micMur3.chr7 5702013 1289 + 108171978 I a score=1579596.000000 s hg38.chr22_GL383582v2_alt 65985 174 + 162811 caaactcctgtgctcaatcaagaga---tcct---attttagcgtcccgagtagctggaactacaggtgcacatcattacgctcggctaa-----ttt-----ttttgttgagatgggtcctcactatgttgcccacgctggtctggaactcctggcttcaagtgatcctcctgccttggcctcccaaag s panTro5.chr22 28846346 174 + 37823149 caaactcctgtgctcaatcaagaga---tcct---attttagtgtcccgagtagctggaactacaggtgcacatcattacgctcggctaa-----ttt-----ttttgttgagatgggttctcactatgttgcccacgctggtcttgaactcctgacttcaagtgatcctcctgccttggcctcccaaag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120672 173 + 50109623 caaactcctgtgctcaatcaagaga---tcct---attttagtgtcccgagtagctggaactacaggtgcacatcattacgctcggctaa------tt-----ttttgttgagatgggttctcactatgttgcccacgctggtcttgaactcctgacttcaagtgatcctcctgccttggcctcccaaag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3142956 174 + 4464012 caaactcctgtgctcaatcaagaga---tcct---attttagcgtccggagtagctggaactacaggtgcacaccattacgctcggctaa-----ttt-----ttttgttgagatgggttctcactatgttgcccacgctggtcttgaactcctggcttcaagtgatcctcctgccttggcctcccaaag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639588 166 - 115148730 ---actcctgtgctcaatcaagaga---tcctcccattttagcctcccgcgtagctagaactacaggtgcacaccattacactcggc---------tt-----ttttgttgagatgggtt----ctatgttgcccatgctggtcttgaactcctggcttcaagtgatcctcctgccttggcctcccaaag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84254834 177 + 92844088 caaactcctgtgctcagtcaagaga---tcctcctattttcgcctcccaagtagctggaactacaggtgcacaccattatgcttggctaa-----ttt-----ttttgttgagatgggttctcactatgttgcccactctggtcttgaacttctggcttcaagtgatcctcctgcgttggtctcccaaag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87599843 177 - 96509753 caaactcctgtgctcagtcaagaga---tcctcctattttcgcctcccaagtagctggaactacaggtgcacaccattatgcttggctaa-----ttt-----ttttgttgagatgggttctcactatgttgcccactctggtcttgaactcctggcttcaagtgatcctcctgcgttggtctcccaaag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091563 173 - 13098629 caaactcctgtgctcagtcaagaga---tcctcctattttcgcctcccaagtagctggaactacaggtgcacaccattatgcttggctaa-----ttt-----ttttgttgagatgggtt----ctatgttgcccactctggtcttgaactcctggcttcaagtgatcctcctgcgttggtctcccaaag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058087 177 - 4483953 caaactcctgtgctcagtcaagaga---tcctcctattttcgcctcccaagtagctggaactacaggtgcacaccattatgcttggctaa-----ttt-----ttttgttgagatgggttctcactatgttgcccactctggtcttgaactcctggcttcaagtgatcctcctgcgttggtctcccaaag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24688868 173 + 33263144 caaactcctgtgctcagtcaagaga---tcctcctattttcgcctcccaagtagctggaactacgggtgcacaccattatgcttggctaa-----ttt-----ttttgttgagatgggtt----ctatgttgcccactctggtcttgaactcctggcttcaagtgatcctcctgcgttggtctcccaaag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963046 173 - 14338769 caaactcctgtgcttagtcaagaga---tcctcctatttttgcctcccaagtagctggaactacaggtgcacaccattatgcttggctaa-----ttt-----ttttgttgagatgggtt----ctatgttgcccactctggtcttgaactcctggcttcaagtgatcctcctgcgttggtctcccaaag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 906293 178 + 1946073 caaactcctgtgttcagtcaagaga---tcctcctattttcgcctcccgagtagctggaactacaggtgcacaccattatgcttggctaa----tttt-----ttttgttgagatgggttctcactatgttgcccactctggtcttgaactcctggcttcaagtgatcctcctgtgttggtctcccaaag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1935286 186 - 2117846 caaactcctgtgctcaatcaagagagcctcctcctattttagcctcctgagtagctgggactacaggtgcacaccgttatgcctggctaaattttttt-tgttttttgtagagatgagttctcacaatattgcccatgctggtcttgac---ctggcttcaagtgattcttttaccttggcctccccaag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8850361 184 - 16357246 caaactcctgtgctcaatcaagaga---tcctcctgttttagcctcctgagtagctgggactgcaggtgtacaccgttatgcctgactaaatttttttgttttttttgtagagatgagttctcacaatgttgcccacgctggtcttgaa---ctggcttcaagtgattcttttaccttggcctccccaag i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1332859 179 - 1807191 caaactcctgtgctcaatcaagagt---tcctcatattttagcctcctgagcagctgggactacaggtgcacaccgttatgcctggctaaattttttt-----ttttgtagagatgagttctcacaatgttgcccatgctggtcttgaa---ctggcttcaagtgattcttttaccttggcctccccaag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 10467 179 + 5963231 caaactcctgtgctcaatcaagaga---tcctcctattttagcctcctgagtagctggtaccacaggtgcacaccgttatgcctggctaaattttttt-----ttttgtagagatgagttctcacagtgttgcccacgctggtcttgaa---ctagcttcaagtgattcttttaccttggcctccccaag i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51225 9 + 1056298 I e canFam3.chr10 46076410 2001 - 69331447 I e otoGar3.GL873526 36277972 0 - 42659167 C e proCoq1.NW_012136747v1 5065541 486 - 6317780 I e micMur3.chr7 5702013 1289 + 108171978 I a score=316928.000000 s hg38.chr22_GL383582v2_alt 66159 31 + 162811 tgttggaaatagagg--catgagccacctggcc s panTro5.chr22 28846520 31 + 37823149 tgttggaaatagagg--catgagccacctggcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120845 31 + 50109623 tgttggaaatagagg--catgagccacctggcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143130 31 + 4464012 tgttggaaatagagg--catgagccacctggcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639754 31 - 115148730 tgttggaagtagagg--cgtgagccacctggcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255011 31 + 92844088 tgttgggattagagg--catgagccaccTGACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600020 31 - 96509753 tgttgggattagagg--catgagccaccTGACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091736 31 - 13098629 tgttgggattagagg--catgagccaccTGACC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058264 31 - 4483953 tgttgggattagagg--catgagccacctggcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689041 31 + 33263144 tgttgggattagatg--catgagccacctggcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963219 31 - 14338769 tgttgggattagagg--catgagccacctggcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 906471 31 + 1946073 tgttgggattagagg--cgtgagccaccTGGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1935472 31 - 2117846 tgttgggattagagg--catgagccatctggcc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8850545 31 - 16357246 tgttgggattagagg--catgagccatctggcc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333038 31 - 1807191 tgttgagattagagg--cataagccatctggcc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 10646 31 + 5963231 tgttgggattagagg--catgagccatcTGGTC i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 51234 32 + 1056298 TGTTGGAAAAGGGGGTCCCTGAGCCTCCAGGA- i dasNov3.JH570235 I 9 C 0 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46076410 2001 - 69331447 I e otoGar3.GL873526 36277972 0 - 42659167 C e proCoq1.NW_012136747v1 5065541 486 - 6317780 I e micMur3.chr7 5702013 1289 + 108171978 I a score=52384.000000 s hg38.chr22_GL383582v2_alt 66190 7 + 162811 cAACAGA s panTro5.chr22 28846551 7 + 37823149 cAACAGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120876 7 + 50109623 cAACAGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143161 7 + 4464012 cAACAGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639785 7 - 115148730 cAACAGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255042 7 + 92844088 CAACAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600051 7 - 96509753 CAACAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091767 7 - 13098629 CAACAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058295 7 - 4483953 cAACAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689072 7 + 33263144 cAACAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963250 7 - 14338769 cAACAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 906502 7 + 1946073 CAACAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1935503 4 - 2117846 cAAC--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8850576 4 - 16357246 cAAC--- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333069 4 - 1807191 cAAC--- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 10677 4 + 5963231 CAAC--- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36277972 7 - 42659167 CAACAGA i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51266 6 + 1056298 -AGCAGA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46076410 2001 - 69331447 I e proCoq1.NW_012136747v1 5065541 486 - 6317780 I e micMur3.chr7 5702013 1289 + 108171978 I a score=441741.000000 s hg38.chr22_GL383582v2_alt 66197 38 + 162811 ----AGTTTTGAAGCTACTCAACTGACAGAGAGAGCAAGACC s panTro5.chr22 28846558 38 + 37823149 ----AGTTTTGAAGCCACTCAACTGACAAAGAGAGCAAGACC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120883 38 + 50109623 ----AGTTTTGAAGCCACTCAACTGACAAAGAGAGCAAGACC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143168 38 + 4464012 ----AGTTTTGAAGCCACTCAACTGACAGAGAGAGCAAGACC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639792 38 - 115148730 ----AGTTTTGAAGCCACTCAACTGACAAAGAAAGCAAGACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255049 38 + 92844088 ----AGTTTTGAGGCCACTCAACTGACAAAGAGAGCAAGACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600058 38 - 96509753 ----AGTTTTGAGGCCACTCAACTGACAAAGAGAGCAAGACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091774 38 - 13098629 ----AGTTTTGAGGCCACTCAACTGACAAAGAGAGCAAGACC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058302 38 - 4483953 ----AGTTTTGAGGCCACTCAACTGACAAAGAGAGCAAGACC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689079 36 + 33263144 ----AGTTTTGAGGCCACTCAACTGAC--AGAGAGCAAGACC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963257 38 - 14338769 ----AGTTTTGAGGCCACTCAACTGACAAAGAGAGCAAGACC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 906509 38 + 1946073 ----AGTTTTGAGGCCACTCAATTGACAAAGAGAGCAAGACC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1935507 38 - 2117846 ----AGTTTTGAGGCCATTCAACTGACCAGAAGAGCAAGACC i calJac3.chrUn_GL286373 C 0 I 8 s saiBol1.JH378157 8850580 38 - 16357246 ----AGTTTTAAGGCCATTCAAATGACCAGGAGAGCAAGACC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333073 38 - 1807191 ----AGTTTTGAGGCCATTCAACTGACCAGGAGAGCAAGACC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 10681 38 + 5963231 ----AGTTTTGAGGCCATTCAACTGACCAGGAGAGCAAGACG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5066027 38 - 6317780 ----AGTTTTGAGGCTACTCAACTGACCAGGAGAGCAAGACC i proCoq1.NW_012136747v1 I 486 I 77 s otoGar3.GL873526 36277979 14 - 42659167 ----------------------------CGAGGGGCAAGACA i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51272 42 + 1056298 GGCTGGTTGTGAAGCCACTCGAGAGACCAGGAGTTCAAGACC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46076410 2001 - 69331447 I e micMur3.chr7 5702013 1289 + 108171978 I a score=992492.000000 s hg38.chr22_GL383582v2_alt 66235 94 + 162811 ----CATGCCTATCTGGGGACTTCTCAGATCTGGCTTGTGGTCTCCCAAACTGGCCTCAGCTGAATGAATGTTCCTGTCCT-ACATGGCAGCACTGTTC s panTro5.chr22 28846596 94 + 37823149 ----CATGCCTATCTGGGGACTTCTCAGATCTGGCTTGTGGTCTCCCAAACTGGCCTCAGCTGAATGAATGTTCCTGTCCT-ACGTGGCAGCACCGTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41120921 94 + 50109623 ----CATGCCTATCTGGGGACTTCTCAGATCTGGCTTGTGGTCTCCCAAACTGGCCTCAGCTGAATGAATGTTCCTGTCCT-ACGTGGCAGCACCGTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143206 94 + 4464012 ----CATGCCTATCTGGGGACTTCTCAGATCTGGCTTGTGGTCTCCCAAACTGGCCTCAGCTGAATGAATGTTCCTGTCCT-ACGTGGCAGCACCCTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639830 94 - 115148730 ----CATATACATCTGGGGACTTCTCAGATCTGGCTTGTGGTCTCCCAAACTGGCCTCAGCTGAATGAATGTTCCTGTCCT-ACGTGGCAGCACCCTTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255087 94 + 92844088 ----CATGTCCATCTGGGGACTTCTCAGATCTGGCTTGTGGCCTCCCAAATTGGCCTCAACTGAATGAATGTTCCTGTCCT-ATGTGGCAGCACCCTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600096 94 - 96509753 ----CATGTCCATCTGGGGACTTCTCAGATCTGGCTTGTGGCCTCCCAAATTGGCCTCAACTGAATGAATGTTCCTGTCCT-ATGTGGCAGCACCCTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091812 94 - 13098629 ----CATGTCCATCTGGGGACTTCTCAGATCTGGCTTGTCGCCTCCCAAATTGGCCTCAACTGAATGAATGTTCCTGTCCT-ATGTGGCAGCACCCTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058340 94 - 4483953 ----CATGTCCATCTGGGGACTTCTCAGATCTGGCTTGTGGCCTCCCAAATTGGCCTCAACTGAATGAATGTTCCTGTCCT-ATGTGGCAGCACCCTTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689115 94 + 33263144 ----CATGTCCATCTGGGGACTTCTCAGATCTGGCTTGTGGCCTCCCAAATTGGCCTCAACTGAATGAATGTTCCTGTCCT-ACGTGGCAGCACCCTTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963295 94 - 14338769 ----CATGTCCATCTGGGGACTTCTCAGATCTGGCTTGTGGCCTCCCAAATTGGCCTCAACTGAATGAATGTTCCTGTCCT-ATGTGGCAGCACCCTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 906547 94 + 1946073 ----CATGTCCATCTGGGGACTTCTCAGATCTGGCTTGTGGCCTCCCAAACTGGCCTCAACTGAATGAATGTTCCTGTCCT-ATGTGGCAGCACCCTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1935553 89 - 2117846 ----CATATCCATCTGGGGACTTCTCAGATCTGAATTGTGGCCTCCCAAACTGG-CTCAGCTG----AGTGTTTCTGTCCT-ATGTGGCAGCACTCTTC i calJac3.chrUn_GL286373 I 8 C 0 s saiBol1.JH378157 8850618 93 - 16357246 ----CATGTCCATCTGGGGACTTCTCAGATCTGAATTGTGGCCTCCCAAACTGG-CTCAGCTGAATAAGTGTTCCTGTCCT-ATGTGGCAGCACCTTTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333111 93 - 1807191 ----CATGTCCATCTGGGGACTTCTCAGATCTGAATTGTGGCCTCCCAAACTGG-CTCAGCTGAATAAGTGTTCCTGTCCT-ATGTGGCAGCACCCTTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 10719 93 + 5963231 ----CATGTCCATCTGGGGACTTCTCAGATCTGAATTGTGGCCTCCCAAACTGG-TTCAGCTGAATAAGTGTTCCTGTCCT-ATGTGGCAGCACTCTTC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36277993 85 - 42659167 ----CATGTATACTCCAGGGCTG-TCAGACTTCGC-TGGAGCCTCCC-ATCTGGCCTGAGATAAA-----GTTCCTGTCCC-AGGTGGCA-CATCTTTC i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51314 90 + 1056298 TACATATGTC---CTGGAGATTTCCTGGGTCTG-CCTGAGGCCTCCC-CTCCCACCTTAGCTGAAA----GCTCAGGTCTTAACTTGGCAGCAACTTTC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46076410 2001 - 69331447 I e proCoq1.NW_012136747v1 5066065 77 - 6317780 I e micMur3.chr7 5702013 1289 + 108171978 I a score=512091.000000 s hg38.chr22_GL383582v2_alt 66329 73 + 162811 TATTTGGGACTGTGAGAGAATCAAGGTGCAGGGACAGCAGGATGGTCTGGGTGCTTGTTACATGGTGG-CCCTT s panTro5.chr22 28846690 73 + 37823149 TACCTGGGACTGTGAGAGAATCAAGGTGCAGGGACAGCAGGATGGTCTGGGTGCTTGTTACATGGTGG-CCCTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121015 73 + 50109623 TACCTGGGACTGTGAGAGAATCAAGGTGCAGGGACAGCAGGATGGTCTGGGTGCTTGTTACATGGTGG-CCCTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143300 73 + 4464012 TACCTGGGACTGTGAGAGAATCAAGGTGCAGGGATAGCAGGATGGTCTGGGTGCTTGTTACATGGTGG-CCCTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639924 73 - 115148730 TACCTGGGACTGTGAGAGAATCAAGGTGCAGGGATAGCAGGATGGTCCGGGTGCTTGTTACATGGTGG-CCCTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255181 46 + 92844088 TACCTCGGACTGTGAGATAATCAAGGTGCAGGGAC---------------------------CGGTGG-CCCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600190 46 - 96509753 TACCTCGGACTGTGAGATAATCAAGGTGCAGGGAC---------------------------CGGTGG-CCCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091906 46 - 13098629 TACCTTGGACTGTGAGATAATCAAGGTGCAGGGAC---------------------------CGGTGG-CCCTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058434 46 - 4483953 TACCTCGGACTGTGAGAGAATCAAGGTGCACGGAC---------------------------CGGTGG-CCCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689209 46 + 33263144 TACCTCGGACTGTGAGAGAATCAAGGTGCAGGGAC---------------------------TGGTGG-CCCTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963389 46 - 14338769 TACCTCGGACTGTGAGAGAATCAAGGTGCAGGGAC---------------------------TGGTAG-CCCTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 906641 42 + 1946073 TACC----ACGGTGAGAGAATCAAGGTGCAGGGAC---------------------------TGGTGG-CCCTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1935642 74 - 2117846 TACCTGGGACTGAGAGAGAATCAAGGCACAGGGCTGGCAGGATGGTCTGGGTGCTTGTCACATAGTGGCCCCTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8850711 74 - 16357246 TACCTGGGACTGAGAGAGAATCAAGGCGCAGGGCTGGCAGGATGGTCTGGGTGCTTGTCACATGGTGGCCCCTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333204 74 - 1807191 TACCTGGGACTGAGAGAGAATCAAGGCGCAGGGCTGGCAGGATGGTCTGGGTGCTTGTCACATGGTGGCCCCTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 10812 74 + 5963231 TACCTGGGACTGAGAGAGAATCAAGGCGCAGGGCTGGCAGGATGGTCTGAGTGCTTGTCGCATGGTGGCCCCTT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5066142 72 - 6317780 TATCTGGGACTATCAGAGAATCAAGGTGCAGGGTT-GCAGGGTGGTGCGGGTCCTTGTCACATGGTGG-CTCTT i proCoq1.NW_012136747v1 I 77 I 322 s otoGar3.GL873526 36278078 57 - 42659167 TATTTTGGATTGTTGGAGAATCAA----------------GGTGGTACGTGTGCTTGTCACATGGTAG-CTCTT i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51404 68 + 1056298 TTCCAGGGACCAACAGGGAAATGAGGGG-GGTGCTGGCAGGATGGTCGGAGTGTCTGTCC--TAGT---CTCTT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46076410 2001 - 69331447 I e micMur3.chr7 5702013 1289 + 108171978 I a score=236742.000000 s hg38.chr22_GL383582v2_alt 66402 21 + 162811 ----TATACATTACCTGTATGCACT s panTro5.chr22 28846763 21 + 37823149 ----TATACATTACCTGTATGCACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121088 21 + 50109623 ----TATACATTACCTGTATGCACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143373 21 + 4464012 ----TATACATTACCTGTATGCACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106639997 21 - 115148730 ----TATACATTACCTGTATGCACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255227 21 + 92844088 ----TATACATTACCTGTATGCACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600236 21 - 96509753 ----TATACATTACCTGTATGCACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091952 21 - 13098629 ----TATACATTACCTGTATGCACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058480 21 - 4483953 ----TATACATTACCTGTATGCACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689255 21 + 33263144 ----TATACATTACCTGTATGCACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963435 21 - 14338769 ----TATACATTACCTGTATGCACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 906683 21 + 1946073 ----TATACATTACCTGTATGCACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1935716 21 - 2117846 ----TATACATTACCTGTATGTACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8850785 21 - 16357246 ----TATACATTACCTGTACGCACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333278 21 - 1807191 ----TATACATTACCTGTATGCACT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 10886 21 + 5963231 ----TATACATTACCTGTATGCACT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36278135 17 - 42659167 ----GATAAATTACATTTCCC---- i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51472 25 + 1056298 AACACAGACGTCCTCTGTACTCACT i dasNov3.JH570235 C 0 I 3 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46076410 2001 - 69331447 I e proCoq1.NW_012136747v1 5066214 322 - 6317780 I e micMur3.chr7 5702013 1289 + 108171978 I a score=407938.000000 s hg38.chr22_GL383582v2_alt 66423 41 + 162811 CTTGGCCTTT----------TGAGGTGTCAGGCCCT-C--CCCAAGCAGTCATC s panTro5.chr22 28846784 41 + 37823149 CTTGGCCTTT----------TGAGGTGTCAGGCCCT-C--CCCAAGCAGTCATC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121109 41 + 50109623 CTTGGCCTTT----------TGAGGTGTCAGGCCCT-C--CCCAAGCAGTCATC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143394 41 + 4464012 CTTGGCCTTT----------TGAGGTGTCAGGCCCT-C--CCCAAGCAGTCATC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640018 42 - 115148730 CTTGACCTTT----------TGAGGTGTCAGGCCCTCC--CCCAAGCAGTCATC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255248 40 + 92844088 CTTGGCCTTT----------TGAGGTGTCAGACCCC-CCGCTCAAGCAGTC--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600257 40 - 96509753 CCTGGCCTTT----------TGAGGTGTCAGACCCC-CCGCTCAAGCAGTC--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7091973 40 - 13098629 CTTGGCCTTT----------TGAGGTGTCAGACCCC-CCGCTCAAGCAGTC--- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058501 40 - 4483953 CTTGGCCTTT----------TGAGGTGTCAGACCCC-CCGCTCAAGCAGTC--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689276 40 + 33263144 CTTGGCCTTT----------TGAGGTGTCAGACCAC-CCGCTCAAGCAGTC--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963456 40 - 14338769 CTTGGCCTTT----------TGAGGTGTCAGACCCC-CCGCTCAAGCAGTC--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 906704 40 + 1946073 CTTGGCCTTT----------TGAGGTGTCAGACTCC-CCGCTCAAGCAGTC--- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1935737 38 - 2117846 CTTGGCTTTT----------TGAGGTGTCAGGCCCT-C--CTGAAGCAGTC--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8850806 38 - 16357246 CTTGGCCTTT----------TGAGGTGTCAGGCTCT-C--CCGAAGCAGTC--- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333299 38 - 1807191 CTTGGCCTTT----------TGAGGTGTCAGGCCCT-C--CCGAAGCAGTC--- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 10907 38 + 5963231 CTTGGTCTTT----------TGAGGTGTCAAGCCCT-C--CCGAAGCAGTC--- i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5066536 38 - 6317780 CTTGGCTTTT----------TGAGGTGTCAGGCCTG-C--CCCAAGTAGGC--- i proCoq1.NW_012136747v1 I 322 I 354 s otoGar3.GL873526 36278152 44 - 42659167 TTTGGATTTTTTGGGGGAGGTGGGGTGTCAGGCCCT-C--CCAAGGC------- i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51500 37 + 1056298 CTTTGC-TTT----------TGATGTGTCACTCCCT-C--CCCAAGCAGTC--- i dasNov3.JH570235 I 3 C 0 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46076410 2001 - 69331447 I e micMur3.chr7 5702013 1289 + 108171978 I a score=723562.000000 s hg38.chr22_GL383582v2_alt 66464 77 + 162811 ATGAATCATGATGGGGGTGTGAAGGGCAGGGACAGGCATGCCTGCAATGTGGGCAGTGTCCTCCCGAGTGCCCTCCT s panTro5.chr22 28846825 77 + 37823149 ATGAATCATGATGGGGGTGTGAAGGGCAGGGACAGGCATGCCTGCAATGTGGGCAGTGTCCTCTCGAGTGCCCTCCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121150 77 + 50109623 ATGAATCATGATGGGGGTGTGAAGGGCAGGGACAGGCATGCCTGCAATGTGGGCAGTGTCCTCTCGAGTGCCCTCCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143435 76 + 4464012 ATGAATCATGATGGGGGTGTGAAGGGCAGGGACAGGCATGCCTGCAATGTGGGCAGTGT-CTCCCGAGTGCCCTCCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640060 77 - 115148730 ATGAATCATGATGGGGGTGTGAAGGGCAGGGACAGGCATGCCTGCAACGTGGGCAGTGTCCTCCCGAGTGCCCTCCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255288 73 + 92844088 ----ATCATGATTGGGGTATGAATGGCAGGGACAGGCATGCCTGCAACGTAGGCAGTGTCCTCCCGAGTGCCCTCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600297 73 - 96509753 ----ATCATGATGGGGGTATGAATGGCAGGGACAGGCATGCCTGCAACGTAGGCAGTGTCCTCCCGAGTGCCCTCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7092013 73 - 13098629 ----ATCATGATGGGGGTATGAATGGCAGGGACAGGCATGCCTGCAACGTAGGCAGTGTCCTCCCGAGTGCCCTCTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058541 73 - 4483953 ----ATCATGATGGGGGTATGAATGGCAGGGACAGGCATGCCTGCAACGTAGGCAGTGTCCTCCCGAGTGCCCTCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689316 73 + 33263144 ----ATCATGATGGGGGTATGAACGGCAGGGACAGGCGTGCCTGCAACGTAGGCAGTGTCCTCCCGAGTGTCCTCTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963496 73 - 14338769 ----ATCATGATGGGGGTATGAATGGCAGGGACAGGCATGCCTGCAACGTAGGCAGTGTCCTCCCGAGTGCCCTCTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 906744 73 + 1946073 ----ATCATGATGGGGGTATGAATGGCAGGGACAGGCATGCCTGCAACATAGGCAGTGTCCTCCCGAGTGCCCTCTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1935775 73 - 2117846 ----ATCAGGATGTGGGTGTGATGGGCAGGGACAGGCATGCCTGTCACATGAGCAGTACCCTCCCGAATGCCCTCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8850844 72 - 16357246 ----ATCATGATGTGGGTGTGACCAGCAGGGACAGGCATGCCTGCCATGTGAGCAGTGCCCTCCCGAATGGCCTCC- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333337 73 - 1807191 ----ATCATGATGTGGGTATGATTGGCAGGGACAGGCATGCCTGCCATGTGAGCAGTGCCCCCCCGAATACCCTCCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 10945 73 + 5963231 ----ATCATGAGGTGGGTGTGACGGGCAGGGACAGGCATGCTTGCCATGTGAGCAGTGCCCTCCCGAATGCCCTCCT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36278196 68 - 42659167 ATCTATCTTGATGGAGGCATGAAGGTCAGGTCCAG----GCCTGTGATGCAGGCAGTGCCCTCCTGCTTCCC----- i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51537 50 + 1056298 ----ATCCTAACAGGTGTTTGGAAAGCAGTGACAGTC---------------GCAG------CCCCAGGACCTGC-- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46076410 2001 - 69331447 I e proCoq1.NW_012136747v1 5066574 354 - 6317780 I e micMur3.chr7 5702013 1289 + 108171978 I a score=1593616.000000 s hg38.chr22_GL383582v2_alt 66541 144 + 162811 TACCAGCCAGAGGCCTGTAATTCAAGATATG-GCAG-CATGAGGAAAACATTTAATAACAATGCCTGTGGCCTTTTCCAATCATTGTGCACCTGTGgcttccattgatcgggcacttatgtgccagaaactgctggtcagactgtg s panTro5.chr22 28846902 144 + 37823149 TACCAGCCAGAGGCCTGTAATACAAGATATG-GCAG-CATGAGGAAAACATTCAATAACAATGCCTGTGGCCTCTTCCAATCATCGTGCACCTGTGgctcccactgatcgggcacttatgtgccagaaactgctggtcagactgtg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121227 144 + 50109623 TACCAGCCAGAGGCCTGTAATACAAGATATG-GCAG-CATGAGGAAAACATTCAATAACAATGCCTGTGGCCTCTTCCAATCATTGTGCACCTGTGgctcccactgatcgggcacttatgtgccagaaactgctggtcagactgtg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143511 143 + 4464012 TACCAGCCAGA-GCCTGTAATACAAGATATG-GCAG-CATGAGGAAAACATTCAATAACGATGCCTGTGGCCTTTTCCAATCATTGTGCACCTGTGGCTTCcattgatcgggcacttatgtgccagaaactgctggtcagactgtg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640137 143 - 115148730 TACCAGCCAGAGGCCTGTAATTCAAGATAC--GCAG-CATGAGGAAAACTTTCAATAACGATGCCTGTGGCCTTTTCCAATCATTGTGCACCTGTGGCTTCcattgattgggcacttatgtgccagaaactgctggtcagactctg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255361 144 + 92844088 TACCAGCCAGAGGCCTGTAATTCAAGATATA-GCAG-CATGAGGAAAACCTTCGATAATGATGCCTATGGCCTTTTCCAATCATTGTGCACCTGTGgcttccattgatagggcacttatgtgccagaaactgctggtcagactgtg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600370 144 - 96509753 TACCAGCCAGAGGCCTGTAATTCAAGATACA-GCAG-CATGAGGAAAACCTTCGATAATGATGCCTATGGCCTTTTCCAATCATTGTGCACCTGTGgcttccattgatagggcacttatgtgccagaaactgctggtcagactgtg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7092086 144 - 13098629 TACCAGCCAGAGGCCTGTAATTCAAGATACA-GCAG-CATGAGGAAAACCTTCGATAATGATGCCTATGGCCTTTTCCAATCATTGTGCACCTGTGgcttccattgatagggcacttatgtgccagaaactgctggtcagactgtg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058614 144 - 4483953 TACCAGCCAGAGGCCTGTAATTCAAGATACA-GCAG-CATGAGGAAAACTTTCGATAATGATGCCTATGGCCTTTTCCAATCATTGTGCACCTGTGGCTTCcactgatagggcacttatgtgccagaaactgctggtcagactgtg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689389 144 + 33263144 TACCAGCCAGAGGCCTGTAATTCAAGATACA-GCAG-CATGAGGAAAACCTTCGATAATGATGCCTATGGCCTTTTCCAATCATTGTGCACCTGTGgcttccattgatagggcacttatgtgccagaaactgctggtcagactgta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963569 144 - 14338769 TACCAGCCAGAGGCCTGTAATTCAAGATACA-GCAG-CATGAGGAAAACCTTCGATAATGATGCCTATGGCCTTTTCCAATCATTGTGCACCTGTGGCTTCcattgatagggcacttatgtgccagaaactgctggtcagactgtg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 906817 145 + 1946073 TACCAGCCAGAGGCCTGTAATTCAAGATACAGGCAG-CATGAGGAAAACCTTCAATAATGATGCCTATGGCCTTTTCCAATCATTGTGCACCTGTGgcttccactgatagggcacttatgtgccagaaactgctggtcacactgtg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1935848 144 - 2117846 TACCTGCCAGAGGCCTGTAATTCAAGATATG-GCAG-CATGAGGAAAACCTTCAATAGTGATGCCTATGGCCTTTTCCAGTCACTGTGCACCTGTGgcttccattgatcaggcacttatatgccagaagctgctagtcagactgtg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8850916 144 - 16357246 TACCTGCCAGAGGCCTGTAATTCAAGATATG-GCAG-CATGAGGAAAACCTTCAATAATGATGCCTATGGCCTATTCCAATCATTGTGCATCTGTGgcttccattgatcaggcacttatgtgccagaaactgctggtcagactgtg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333410 144 - 1807191 TACCTGCCAGAGGACTGTAATTCAAGATATG-GCAG-CATGAGAAAAACCTTCAATAATGATGCCTATGGCCTTTTCCAATCATTGTGCACCTGTGgcttccattgatcaggcacttatgtgccagaaactgctggtcagactgtg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 11018 144 + 5963231 TACCTGCCAGAGGCCTGTAATTCAAGATATG-GCAG-CATGAGGAAAACCTTCAATAATGATGCCTATGGCCTTTTCCAATCATTGTGCACCTGTGgcttccattgatcaagcacttaggtgctagaaactgctggtcagattgtg i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36278264 132 - 42659167 ----------AGGGCTATAATTCAGAACA-G-GCAG-AGTGAGG-CAATGTTCAGAAATGTGGCCTGTGGCCTTTTCCAGGCATTTTGCAACTGTGGCTTTTGTTGATCATGTACTTACACACCAGGTTCTGCTGCTCAGACTTTG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46078411 130 - 69331447 TGCCTACCCGGGGCC-------CAGGATGCG-GCAGCCACAGGGCAAACAAGCCGTCACGAGGCCTGTGGATTTTTGCCATCATTGTGCAATTGCAGCTTCAA------GGTCCCCGATGTGCCGCGAAGGGTC--TCAGGCCGTG i canFam3.chr10 I 2001 I 341 s dasNov3.JH570235 51587 82 + 1056298 ---------AGGGCCTGGAATCCAAGGTGGA-GCAG-CCCTGAGGAAACCTGCTCTAAGGAGGC---TGGTCTT-----------------------------------GGGCACCTCTTGG---------GCTCAGCAG------ i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e proCoq1.NW_012136747v1 5066574 354 - 6317780 I e micMur3.chr7 5702013 1289 + 108171978 I a score=1593257.000000 s hg38.chr22_GL383582v2_alt 66685 166 + 162811 tg--ctctagctcattaatcctcccacagccccctaaggaggtggttttatggtccccaaggcacagagactgaggctcagagatcacataacaaggttcaagtcacacagcggtgttaggagtccacatcc--aatgtgtatg--ctgagctactatt---ctatactgtTTGG s panTro5.chr22 28847046 168 + 37823149 tgtgctccagctcattaatcctcccacagccccctaaggaggtggttttatggtccccaaggcacagagactgaggctcagagatcacataacaaggttcaagtcacacagtggtgttaggagtccacatcc--aatgtgtatg--ctgagctactatt---ctatactgtTTGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121371 168 + 50109623 tgtgctccagctcattaatcctcccacagccccctaaggaggtggttttatggtccccaaggcacagagactgaggctcagagatcacataacaaggttcaagtcacacagtggtgttaggagtccacatcc--aatgtgtatg--ctgagctactatt---ctatactgtTTGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143654 167 + 4464012 tgtgctccagctcattaatcctcccacag-cccctaaggaggtggttttatggtccccaaggcacagagactgaggctcagagatcacataacaaggttcaagtcacacagcagtgttaacagtccacatcc--aatgtgtatg--ctgagctactatt---ctatactgtTTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640280 168 - 115148730 tgtgctccagctcattaatcctcccacagccccctaaggaggtggttttatggtccccaaggcacagagactgaggctcagagatcacataacaaggttcaagtcacagagcggtgttaagagtccatgtcc--aatgtgtatg--ctgagctactatt---ctatactgtTTGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255505 165 + 92844088 tgtgctccagctcattaatcctcccacagccccctaaggaggtggttttatggtccccaaggc--agagaccgaggttcagagattacgtaacaaggttcaagtcacagagcggtgtta-gagtacacgtct--aaagtatatg--ctgagctactact---ctatactgtTTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600514 165 - 96509753 tgtgctccagctcattaatcctcccacagccccctaaggaggtggttttatggtccccaaggc--agagaccgaggttcagagattacataacaaggttcaagtcacagagcGGTGTTA-GAGTACACGTCT--AAAGTGTATG--CTGAGCTACTACT---CTATACTGTTTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7092230 165 - 13098629 tgtgctccagctcattaatcctcccacagccccctaaggaggtggttttatggtccccaaggc--agagaccaaggttcagagattacataacaaggttcaagtcacagagcggtgtta-gagtatacgtct--aaagtgtatg--ctgagctactact---ctatactgtTTGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058758 165 - 4483953 tgtgctccagctcattaatcctcccacagccccctaaggaggtggttttatggtccccaaggc--agagaccgaggttcagagattacataacaaagttcaagtcacagagcgaggtta-gagtccacgtct--aaagtgtacg--ctgagctactact---ctatactgtTTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689533 165 + 33263144 tgtgctccagctcattaatcctcccacagccccctaaggaggtggttttatggtccccaaggc--agagaccgaggttcagagattacataacaaggttcaagtcacagagcagtgtta-gagtcCATGTCT--AAAGTGTATG--CTAAGCTACTACT---CTATACTGTTTGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963713 165 - 14338769 tgtgctccagctcattaatcctcccacagccccctaaggaggtggttttatggtccccaaggc--agagaccgaggttcagagattacataacaaggttcaagtcacagagcggtgtta-gagtccacgtct--aaagtgtatg--ctgagctactact---ctatactgtTTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 906962 167 + 1946073 tgtgctccagcttattaatcctcccacagtcccctaaggaggtggttttatggtccccaaggcatagagaccaaggttcagagatcacataacaaggttcaagtcacagagtggtgtta-gagtacacgtcc--aaagtgtatg--ctgagctactact---ctatactgCTTAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1935992 168 - 2117846 tg--ctccaactcattaatcctcccacagccccctaaggaggcggttttatggtcctcaaggcatagagactgaggctcagagaccacataacgaggtacaagtcactgagtggtgtca-gagtccacgtcc--aaagtgtgtg--ctgagctactactgctctatactgtTTGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8851060 168 - 16357246 tg--ctccaactcattaatcctcccacagccccctaaggaggtggttttatggtcctcaaggcacagagattgaggctcagagaccacataacgaggtgcaagtcacagagtggtgtca-gagtccacatcc--aaaGTGTGTG--CTGAGCTACTACTGCCCTATACTGTTTGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333554 168 - 1807191 tg--ctccaactcattaatcctcccacagcctcctaaggaggtggttttatggtcctgaaggcacagagactgaggctcagagaccacataacgaggtgcaagtcacagagcggtgtca-gagtcCACATCC--AAGGTGTGTG--CTGAGCTACTACTGCTCTAGACTGTTTGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 11162 168 + 5963231 tg--ctccaactcattaatcctcccacagccccctaaggaggtggttttatgttcctcaaggcacacagactgaggctcagagaccacataacgaggtgcaagtcacagtgcagtgtca-gagtccacatcc--aaaGTGTGTG--CCGAGCTACTACTGCTCTATACTGTTTGG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36278396 96 - 42659167 CGTGCTCCC------------------------------------------------------------------------AGATCATGTAATGAGGTCAAAATGACACAGCAG-GACA-GAGTGCGAGTTCTTAACACATGCT--CTGAGCAACTGCT---GTATACTGTTTTG i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51669 149 + 1056298 ---GCTCCAACTGAC---TCCTCCCACGGGCCT----GAGGCCAGAGCTGCACCCCTTAGAGGCTGAAGACCGGGGTCCTGTGACGGCATCA--------GGGTCAGAGAGCAGCATCA-GAGCCCATCTCC--AGAACACATGCCCTCAGCAGCTC-----CTGTTCTGTTCGG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46078541 341 - 69331447 I e proCoq1.NW_012136747v1 5066574 354 - 6317780 I e micMur3.chr7 5702013 1289 + 108171978 I a score=115296.000000 s hg38.chr22_GL383582v2_alt 66851 9 + 162811 ACATTACAT s panTro5.chr22 28847214 9 + 37823149 ACATTACAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121539 9 + 50109623 ACATTACAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143821 9 + 4464012 ACATTACAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640448 9 - 115148730 ACATTACAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255670 9 + 92844088 ACATTACAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600679 9 - 96509753 ACATTACAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7092395 9 - 13098629 ACATTACAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058923 9 - 4483953 ACATTACAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689698 9 + 33263144 ACATTACAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963878 9 - 14338769 ACATTACAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 907129 9 + 1946073 ACATTACAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1936160 9 - 2117846 ACATCACAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8851228 9 - 16357246 ACATCACAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333722 9 - 1807191 ACATCACAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 11330 9 + 5963231 ACATCACAT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5703302 9 + 108171978 ACATTATAT i micMur3.chr7 I 1289 C 0 s otoGar3.GL873526 36278492 9 - 42659167 ACATCATGC i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51818 9 + 1056298 ACATAAATT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46078541 341 - 69331447 I e proCoq1.NW_012136747v1 5066574 354 - 6317780 I a score=518653.000000 s hg38.chr22_GL383582v2_alt 66860 43 + 162811 TCTATTAATGGTCAGTATAGATGTTTCTGGGATTTATTATTTT s panTro5.chr22 28847223 43 + 37823149 TCTATTAATGGTCAGTATAGATGTTTCTGGGATTTATTATTTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121548 43 + 50109623 TCTATTAATGGTCAGTATAGATGTTTCTGGGATTTATTATTTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143830 43 + 4464012 TCTATTAATGGTCAGTATAGACGTTTCTGGGATTTGTTATTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640457 43 - 115148730 TCTATTAATTGTCAGTATAGGCGTTTCTGGGATTTATTATTTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255679 39 + 92844088 TCTATTAATGGTCAGTATAGAAGTTTCTGGG----ATTATTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600688 39 - 96509753 TCTATTAATGGTCAGTATAGAAGTTTCTGGG----ATTATTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7092404 39 - 13098629 TCTATTAATGGTCAGTATAGAAGTTTCTGGG----ATTATTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058932 39 - 4483953 TCTATTAATGGTCGGTATAGAAGTTTCTGGG----ATTATTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689707 39 + 33263144 CCTATTAATGGTCAGTATAGAAGTTTCTGGG----ATTATTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963887 39 - 14338769 TCTACTAATGGTCGGTATAGAAGTTTCTGGG----ATTATTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 907138 43 + 1946073 TCTATTAATGGTCAGTATAGAAGTTTCTGGGATTTATTATTTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1936169 43 - 2117846 TCTATTCATGGTCAGTATAGAAGTTTCTGGGATTTTTTATCTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8851237 43 - 16357246 TCTATTAATGGTTAGTATAGAAGTTTCTGGGATTTTTTATCTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333731 43 - 1807191 TCTATTAATGGTCAGCATAGAAGTTTCTGGGATTTTTTATCTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 11339 42 + 5963231 TCTATTAATGGTCAGTATAGAAGTTTCTGGGATTTTTTATC-T i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5703311 43 + 108171978 TCTATTAATGACCAGTATAGAAGTTCCTGGGATTTATTATTTT i micMur3.chr7 C 0 I 187 s proCoq1.NW_012136747v1 5066928 43 - 6317780 TCTATCAATGACCAGTATAGAAGTTCCTGGGATTTATTATTTT i proCoq1.NW_012136747v1 I 354 I 2759 s otoGar3.GL873526 36278501 39 - 42659167 TCTACC---GACCAGTATGGAAGTTCCTGGGATTTA-TATTTT i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51827 41 + 1056298 CCCA--AACAGCTAGTAGGGAGGTTACTGGGATTTATCATTTT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46078541 341 - 69331447 I a score=205421.000000 s hg38.chr22_GL383582v2_alt 66903 22 + 162811 TAGGAAACAGA---TCCAACCTGCC s panTro5.chr22 28847266 22 + 37823149 TAGGAAACAGA---TCCAACCTGCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121591 22 + 50109623 TAGGAAACAGA---TCCAACCTGCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143873 22 + 4464012 TAGGAAACAGA---TCCAACCTGCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640500 22 - 115148730 TAGGAAACAGA---TCCAACCGGCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255718 22 + 92844088 TAGGGAACAGA---TCCAACCTGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600727 22 - 96509753 TAGGGAACAGA---TCCAACCTGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7092443 22 - 13098629 TAGGGAACAGA---TCCAACCTGCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058971 22 - 4483953 TAGGGAACAGA---TCCAACCTGCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689746 22 + 33263144 TAGGGAATAGA---TCCAACCTGCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963926 22 - 14338769 TAGGGAACAGA---TCCAACCTGCG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 907181 22 + 1946073 TAGGGAACAGA---TCCAACCTGCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1936212 22 - 2117846 TAGGAAACACA---ACCAAACTGCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8851280 22 - 16357246 TAGGAAACACA---ACCAAACTGCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333774 22 - 1807191 TAGGAAACACA---ACCAAAATGGC i cebCap1.NW_016107750v1 C 0 I 43 s aotNan1.NW_018512383v1 11381 22 + 5963231 TAGGAAACACA---ACCAAACTGCC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36278540 22 - 42659167 ATAAAAACACA---TCCAGCCTGTG i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51868 23 + 1056298 --AGAAACTCACACCTCAGCCCACG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46078541 341 - 69331447 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703354 187 + 108171978 I a score=68867.000000 s hg38.chr22_GL383582v2_alt 66925 12 + 162811 TTCCCTGAACAG s panTro5.chr22 28847288 12 + 37823149 TTCCCTGAACAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121613 12 + 50109623 TTCCCTGAACAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143895 12 + 4464012 TTCCCTGAACAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640522 12 - 115148730 TCCCCTGAATGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255740 12 + 92844088 TTCCCTCAACAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600749 12 - 96509753 TTCCCTCAACAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7092465 12 - 13098629 TTCCCTCAACAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4058993 12 - 4483953 TTTCCTCAACAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689768 12 + 33263144 TTCCCTCAACAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963948 12 - 14338769 TTCCCTCAACAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 907203 12 + 1946073 TTCCCTGAACAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1936234 12 - 2117846 ATTCCTGAATAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8851302 12 - 16357246 GTCCCTGAATAC i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 11403 12 + 5963231 ATCCCTGAATAC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36278562 8 - 42659167 CTCCCCCA---- i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51891 8 + 1056298 CTCCCCAG---- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46078541 341 - 69331447 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703354 187 + 108171978 I e cebCap1.NW_016107750v1 1333796 43 - 1807191 I a score=123589.000000 s hg38.chr22_GL383582v2_alt 66937 16 + 162811 TGGTACTGC---TGTGTCA s panTro5.chr22 28847300 16 + 37823149 TGGTACTGC---TGTGTCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121625 16 + 50109623 TGGTACTGC---TGTGTCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143907 16 + 4464012 TGGTACTGC---TGTGTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640534 17 - 115148730 TAGTACTCCT--TGTGTCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255752 17 + 92844088 TGGGACTGCT--TGTGTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600761 17 - 96509753 TGGGACTGCT--TGTGTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7092477 17 - 13098629 TGGGACTGCT--TGTGTCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4059005 17 - 4483953 TGGGACTGCT--TGTGCCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689780 17 + 33263144 TGGGACTGCT--TGTGTCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963960 17 - 14338769 TGGGACTGCT--TGTGCCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 907215 17 + 1946073 TGGAACTGCT--TGTGTCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1936246 17 - 2117846 TGGGACTGCT--TGTGTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8851314 17 - 16357246 TGGGACTGCT--TGTGTCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1333839 13 - 1807191 TA----TGCT--TGTGTTA i cebCap1.NW_016107750v1 I 43 C 0 s aotNan1.NW_018512383v1 11415 17 + 5963231 TGGGACTGCT--TGTGTCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36278570 7 - 42659167 --GTACTGC---------- i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 51899 16 + 1056298 ---GGCTGCTTCTCTGGCA i dasNov3.JH570235 C 0 I 153 e mm10.chr15 82794755 12113 + 104043685 I e canFam3.chr10 46078541 341 - 69331447 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703354 187 + 108171978 I a score=1218246.000000 s hg38.chr22_GL383582v2_alt 66953 122 + 162811 TGGTAAAAAGTGCACTGTGCCCTG--GCAGGCCCTATGGACGTTGCCAAGTGAGATGGTG--TGAAAATATGTCAGCAAGTG-GTAGACTAGGAAACTGCGGGCTCTCGTTCTCCTAGAGAGCTCAA s panTro5.chr22 28847316 122 + 37823149 TGGTAAAAAGTGCACTGTGCCCTG--GCAGGCCCTATGGACGTTGCCAAGTGAGATGGTG--TGAAAATATGTCAGCAAGTG-GTAGACTAGGAAACTCCGGGCTCTCGTTCTCCTAGAGAGCTCAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121641 122 + 50109623 TGGTAAAAAGTGCACTGTGCCCTG--GCAGGCCCTATGGACGTTGCCAAGTGAGATGGTG--TGAAAATatgtcagcaagtg-gtagactaggaaactccgggctctcgttctcctagagagctcaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3143923 122 + 4464012 TGGTAAAAAGTGCACTGTGCCCTG--GCAGGCCCTATGGACGTTGCCAAGTGAGATGGTG--TGAAAATATGTCAACAAGTG-GTAGACTAGGAAACTCCGGGCTCTCGTTCTCCTAGAGAGCTCAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640551 122 - 115148730 TGGTGAAAAATGCACTGTGCCCTG--GCAGGCCCTATGGACGTTGCCAAGTGAGATGGTG--TGAAAATATGtcagcaagcg-gtagactaggaaactccgggctcttgttctcctagagagctcaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255769 120 + 92844088 CGGTGAAAAGTGCACTGTGCCCTG--GCAGGCCCTCTGGACGTTGCCAAGTGAGATGGTG--TGAAAATacatcagcaagtg-gtagactaggaaactccgggctc--attctcctggagagctcag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600778 120 - 96509753 CGGTGAAAAGTGCACTGTGCCCTG--GCAGGCCCTCTGGACGTTGCCAAGTGAGATGGTG--TGAAAATacatcagcaagtg-gtagactaggaaactccgggctc--attctcctggagagctcag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7092494 120 - 13098629 CGGTGAAAAGTGCACTGTGCCCTG--GCAGGCCCTCTGGACGTTGCCAAGTGAGATGGTG--TGAAAATacatcagcaagtg-gtagactaggaaactccgggctc--attctcctggagagctcag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4059022 120 - 4483953 CGGTGAAAAGTGCACTGTGCCCTG--GCAGGCCCTCTGGACATTGCCAAGTGAGACGGTG--TGAAAATacatcagcaagtg-gtagactaggaaactccgggctc--attctcctggagagctcag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689797 120 + 33263144 CGGTGAAAAGTGTACTGTGCCCTG--GCAGGCCCTCTGGACATTGCCAAGTGAGATGGTG--TGAAAATacatcagcaagtg-gtagactaggaaactccgggctc--attctcctggagagctcag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13963977 120 - 14338769 CGGTGAAAAGTGCACTGTGCCCTG--GCAGGCCCTCTGGACATTGCCAAGTGAGATGGTG--TGAAAATacatcagcaagtg-gtagactaggaaactccgggctc--attctcctggagagctcag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 907232 120 + 1946073 CAGTAAAAAGTGCACTGTGCCCTG--GCAGGCCCTCTGGACATTGCCAAGTGAGACGGTG--TGAAAATacatcagcaagtg-gtagactaggaaactccgggctc--attctcctagacagctcag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1936263 122 - 2117846 TGGTGAAAAATACACTGTGCCCTG--GCAGGCCCTCTGGACATTGCCAAGTGACATGGTG--TGAAAATacgtcagcaagcg-gtggactgggaagctctgggctctcgttctcctagagtccacag i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8851331 122 - 16357246 TGGTGAAAAATGCACTGTGCCCTG--GCAGGCCCTCTGAACATTGCCAAGTGACATGGTG--TGAAAATATGtcagcaagtg-gtggactaggaagctctgggctcttgttctcctagagtccccag i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1333852 122 - 1807191 TGGTGAAAAATGCACTGTGCCCTG--GTAGGCCCTCTGGACATTGCCAAGTGACATGGTG--TGAAAATacgtcagcaagca-gtggactaggaagctctgggctctcgttctcctagagtccccag i cebCap1.NW_016107750v1 C 0 I 17 s aotNan1.NW_018512383v1 11432 121 + 5963231 CGGTAAAAAATGCACTGTGCCCTG--GCAGGCCCTCTGGACATTGCCAAGTGACATGGTG--TGAAAATacgtcagcaagcg-gtggactaggaagctctgggctcttgttctcctagagtccaca- i aotNan1.NW_018512383v1 C 0 I 2 s otoGar3.GL873526 36278577 114 - 42659167 -------------CCTGTGCACTGATGGGGGCCTTCTGGCCATTTCCATGTGGGACAGTGCTTGGAAATATGTTGGGAAGCACTTGGACCAGGAAGCTCTAGGGTCCCGTATCTCCAGAGAGACTGA i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078541 341 - 69331447 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703354 187 + 108171978 I a score=76512.000000 s hg38.chr22_GL383582v2_alt 67075 17 + 162811 TGTT---AAAGCTATAGGAG s panTro5.chr22 28847438 17 + 37823149 CGTT---AAAGCTATAGGAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121763 17 + 50109623 tgtt---aaagctataggag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3144045 17 + 4464012 TGTT---AAAGCTATAGGAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640673 17 - 115148730 tgtt---aaagctataggag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255889 19 + 92844088 ggttaacaaagctatagga- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87600898 19 - 96509753 ggttaacaaagctatagga- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7092614 19 - 13098629 ggttaacaaagctatagga- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4059142 19 - 4483953 ggttaacaaagctatagga- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24689917 19 + 33263144 ggttaacaaagctatagga- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13964097 19 - 14338769 ggttaacaaagctatagga- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 907352 19 + 1946073 ggttaacaaagctatagga- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1936386 16 - 2117846 ---taacaatgctgaagga- i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8851454 16 - 16357246 ---tgacaatgctaaagga- i saiBol1.JH378157 I 1 C 0 s aotNan1.NW_018512383v1 11555 16 + 5963231 ---taacaatgctaaagga- i aotNan1.NW_018512383v1 I 2 C 0 s otoGar3.GL873526 36278691 14 - 42659167 -GTTAACA--GTCGGAG--- i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078541 341 - 69331447 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703354 187 + 108171978 I e cebCap1.NW_016107750v1 1333974 17 - 1807191 I a score=114802.000000 s hg38.chr22_GL383582v2_alt 67092 11 + 162811 ACCAAAACATC s panTro5.chr22 28847455 11 + 37823149 ACCAAAACATC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121780 11 + 50109623 accaaaacatc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3144062 11 + 4464012 ACCAAAACATC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640690 11 - 115148730 accaaaacatc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255908 11 + 92844088 accaaaacatc i rheMac8.chr10 C 0 I 3 s macFas5.chr10 87600917 11 - 96509753 accaaaacatc i macFas5.chr10 C 0 I 3 s macNem1.NW_012012688v1 7092633 11 - 13098629 accaaaacatc i macNem1.NW_012012688v1 C 0 I 3 s cerAty1.NW_011999588v1 4059161 11 - 4483953 accaaaacatc i cerAty1.NW_011999588v1 C 0 I 3 s chlSab2.chr19 24689936 11 + 33263144 accaaaacatc i chlSab2.chr19 C 0 I 3 s manLeu1.NW_012102031v1 13964116 11 - 14338769 accaaaacatc i manLeu1.NW_012102031v1 C 0 I 3 s colAng1.NW_012115588v1 907371 11 + 1946073 accaaaacatc i colAng1.NW_012115588v1 C 0 I 3 s calJac3.chrUn_GL286373 1936402 11 - 2117846 accaaaacatc i calJac3.chrUn_GL286373 C 0 I 3 s saiBol1.JH378157 8851470 11 - 16357246 accaaaacatc i saiBol1.JH378157 C 0 I 3 s cebCap1.NW_016107750v1 1333991 11 - 1807191 accaaaacatc i cebCap1.NW_016107750v1 I 17 I 3 s aotNan1.NW_018512383v1 11571 11 + 5963231 accagaacatc i aotNan1.NW_018512383v1 C 0 I 3 s otoGar3.GL873526 36278705 2 - 42659167 --------AT- i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078541 341 - 69331447 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703354 187 + 108171978 I a score=1086153.000000 s hg38.chr22_GL383582v2_alt 67103 100 + 162811 GTGAGAATTCTAGAAACTAGTTAGGATGCTGCAATGCC-AGCTAGTGCA-GAGCCAGGGAGGGACTGCACTGGGAAGGGTAGTCAAGTTGGAGCATTTTGCT s panTro5.chr22 28847466 100 + 37823149 GTGAGAATTCTAGAAACTAGTTAGGATGCTGCAATGCC-AGCTAGTGCA-GAGCCAGGGAGGGACTGCACTGGGAAGGGTAGTAAAGTTGGAGCATTTTGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121791 100 + 50109623 gtgagaattctagaaactagttaggatgctgcaatgcc-agctagtgca-gagccagggagggactgcactgggaagggtagtaaagttggagcattttgct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3144073 99 + 4464012 ATGAGAATTCTAGAAACTAGTTAGGATGCTGCAATGCC-AGCTGGTGC--GAGCCAGGGAGGGACTGCACTGGGAAGGGTAGTAAAGTTGGAGCATTTTGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640701 95 - 115148730 gtgagaattctataaactagttaggatgctgcaatgcc-agctggtgca-gagccaggaagggactgcactgggaaggg-----aagttggagcattttgct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84255922 98 + 92844088 gtgagaattctagagactagttaggacgctgcaatgcc-agctgacgca-gagccaggaagggactgcact-ggaagggtagtaaagtt-gagcattttact i rheMac8.chr10 I 3 C 0 s macFas5.chr10 87600931 98 - 96509753 gtgagaattctagagactagttaggacgctgcaatgcc-agctgacgca-gagccaggaagggactgcact-ggaagggtagtaaagtt-gagcattttact i macFas5.chr10 I 3 C 0 s macNem1.NW_012012688v1 7092647 98 - 13098629 gtgagaattctagagactagttaggacgctgcaatgcc-agctgacgca-gagccaggaagggactgcatt-ggaagggtagtaaagtt-gagcattttact i macNem1.NW_012012688v1 I 3 C 0 s cerAty1.NW_011999588v1 4059175 98 - 4483953 gtgagaattctagagactagttaggacgctgcaatgcc-agctgacgca-gagccaggaagggactgcact-ggaagggtagtaaagtt-gagcattttact i cerAty1.NW_011999588v1 I 3 C 0 s chlSab2.chr19 24689950 98 + 33263144 gtgagaattttagagactagttaggacgctgcaatgcc-agctgatgca-gagccaggaagggactgcact-ggaagggtagtaaagtt-aagcattttact i chlSab2.chr19 I 3 C 0 s manLeu1.NW_012102031v1 13964130 98 - 14338769 gtgagaattctagagactagttaggacgctgcaatgcc-agctgacgca-gagccaggaaaggactgcact-ggaagggtagtaaagtt-gagcattttact i manLeu1.NW_012102031v1 I 3 C 0 s colAng1.NW_012115588v1 907385 98 + 1946073 gtgagaattctagagactagttaggatgctgcaatgcc-agctggtgca-gagccaggaagggactgcact-ggaagggtagtaaagtt-gaacattttgct i colAng1.NW_012115588v1 I 3 C 0 s calJac3.chrUn_GL286373 1936416 100 - 2117846 atgagaattctagaaactagttaggaagctgcaatgcc-agctggcaca-gagtcaggaagggactgcactgggaagggtactcaagttggagcattttgca i calJac3.chrUn_GL286373 I 3 C 0 s saiBol1.JH378157 8851484 100 - 16357246 ataagaattctaaaaactagttaggaagttgcaatgcc-agctggcaca-gagccaggaagggcctacactgggaagggaagtaaagttggagcattttgcc i saiBol1.JH378157 I 3 C 0 s cebCap1.NW_016107750v1 1334005 95 - 1807191 atgagaattccagaaactagttaggaagctgcaatgcc-agctggcaca-gagccaggaagggactgcactgggaaggg-----aagttggagcattttgcc i cebCap1.NW_016107750v1 I 3 C 0 s aotNan1.NW_018512383v1 11585 101 + 5963231 atgagaattctagaaactagttaggaagctGCAATGCC-AGCTGGCACAGGAGCCAGGAAGGGACTGTACTGGGAAGGGTAGTAAAGTTGGAGCATTTTGCC i aotNan1.NW_018512383v1 I 3 C 0 s micMur3.chr7 5703541 100 + 108171978 GTGAGAATTCTAGAAACCAGTTAGGCAGGTGTAGCGCCCAGCTGGTCCA-GAGCCAGGAGGGGACTGCACTC-GAAGGGTAGGCAAGTTTGAGCATTTTGCT i micMur3.chr7 I 187 I 2752 s otoGar3.GL873526 36278707 98 - 42659167 GTGAGAATTCTAGAAACCCATTAGGAAGCTGTAGCACCTAGCTGGTCCA-GAGCCAGGA---GACTGTACTCAGAAGGGTAGTAAAGTTCAAGCATCCTGCT i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078541 341 - 69331447 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I a score=31536.000000 s hg38.chr22_GL383582v2_alt 67203 3 + 162811 ---TGT s panTro5.chr22 28847566 3 + 37823149 ---TGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121891 3 + 50109623 ---tgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3144172 3 + 4464012 ---TGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640796 3 - 115148730 ---tgt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84256020 3 + 92844088 ---tgt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87601029 3 - 96509753 ---tgt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7092745 3 - 13098629 ---tgt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4059273 3 - 4483953 ---tgt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24690048 3 + 33263144 ---tgt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13964228 3 - 14338769 ---tgt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 907483 3 + 1946073 ---tgt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1936516 3 - 2117846 ---tgt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8851584 3 - 16357246 ---tgt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1334100 3 - 1807191 ---tgt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 11686 3 + 5963231 ---TGT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36278805 6 - 42659167 GGCCTT i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078541 341 - 69331447 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I a score=928709.000000 s hg38.chr22_GL383582v2_alt 67206 77 + 162811 TCTTGCCCTTCCCCCTGCC--AGGCATAGCAATGCTACTGGGAGAGACCCTCCAATTCCCAGCTCCTCCCATGGGATGG s panTro5.chr22 28847569 77 + 37823149 TCTTGCCCTTCCCCCTGCC--AGGCACAGCAATGCTACTGGGAGAGACCCTCCAATTCCCAGCTCCTCCCATGGGACGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121894 77 + 50109623 tcttgcctttccccctgcc--AGGCACAGCAATGCTACTGGGAGAGACCCTCCAATTCCCAGCTCCTCCCATGGGACGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3144175 77 + 4464012 TCTTGCCCTTCCCCCTGCC--AGGCGCAGCAATGCTACTGGGAGAGACCCTCCAATTCCCAGCTCCTCCCATGGGACGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640799 77 - 115148730 tcttgcccttccccctgcc--aggcacagcaatgctactgggagggaccctccaattcccagctcctcccatgggaCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84256023 77 + 92844088 tcttgcccttccccctgcc--aggcacagcaatgccactgggagggaccctccaattcccagctcctcccatgggaCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87601032 77 - 96509753 tcttgcccttccccctgcc--AGGCACAGCAATGCCACTGGGAGGGACCCTCCAATTCCCAGCTCCTCCCATGGGACAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7092748 77 - 13098629 tcttgcccttccccctgcc--aggcacagcaatgccactgggagggaccctccaattcccagctcctcccatgggaCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4059276 77 - 4483953 tcttgcccttccccctgcc--aggcacagcaatgccactgggagggaccctccaattcccagctcctcccatgggaCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24690051 77 + 33263144 tcttgcccttccccctgcc--AGGCACAGCAATGCCACTGGGAGGGACCCTCCAATTCCCAGCTCCTCCCATGGGACAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13964231 77 - 14338769 tcttgcccttccccctgcc--aggcacagcaatgccactgggagggaccctccaattcccagctcctcccatgggaCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 907486 77 + 1946073 tcttgcccttccccctgcc--aggcacagcaatgccactgggagggaccctccaattcccagctcctcccatgggaCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1936519 77 - 2117846 ttttgcccttccccctgcc--aggcacagcaatgccattgggagggaccctcCAATTCCCAGCTCTTCCGATAGGACAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8851587 77 - 16357246 tcttgcccttcctcctgcc--aggcatggcaatgccattgggagggaccctccaattcccagctcttcccataggaCAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1334103 77 - 1807191 tcttgcccttccccctgcc--aggcacagcaatgccattgggagggaccctccaattcccagctcttcccataggaCAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 11689 77 + 5963231 TCTTGCCCTTCCCCCTGCC--AGGCACAGCAATGCCATTGGGAGGGACCCTCCAATTCCCAGCTCTTCCCATAGGACAG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36278811 69 - 42659167 TGTTGCCCTGCCCGCCCCT--A--CATAGCAGT-CCATCTGGAGAAACTTCCCAATTCCCAGCTCC-----TGGGACAG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46078882 76 - 69331447 TCCTGCCCCTCCCCCTCCCGGAGGCACAGCA--GCCCGTGGAGGAAGCCCCCCAATTCCCC-CTCCTTCCCGGGAACAG i canFam3.chr10 I 341 I 418 e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I a score=4002870.000000 s hg38.chr22_GL383582v2_alt 67283 428 + 162811 GTTTCT----GCTGGGTCCGACTCA----AGAGTGCTGAGTGGTGGGGTCTGTCTGCCCTCAG----------------------------AGCAGCA---CCTC-TGCGTTTCCA----CAGCTGCAAGGGG-ACGGGGTTATGGGCAGTGGAATagttgtgtctgggtatcctggaggggattggtgccaggacccccggtaaataccaaaacccaaggatgctcaggttccttatgtaaaatggcatagtatacctatgcaa-----atgctcctgtatactttaaatcatctctagattatttgtaatgcctaatacagtgtaaatgctacataaatagttgctatactgtactgctCTTATTTGTATTTTTAGTTGTTATAC-----TTTCTCA--AGTTATCTTTGATGTGTGGTTGAATTTGTGGATGCGGAGCCTGTGGGTATCGAGGGCTGCTTGTACCCtagaaac-agaaatgga s panTro5.chr22 28847646 428 + 37823149 GTTTCT----GCTGGGTCCGACTCA----AGAGTGCTGAGTGGTGGGGTCTGTCTGCCCTCAG----------------------------AGCAGCA---CCTC-TGAGTTTCCA----CAGCTGCAAGGGG-ACGGGGTTATGGGCAGTGGAATagttgtgtctgggtatcctggaggggattggtgccaggacccccagtaaataccaaaatccaaggatgctcaggttccttatgtaaaatggcatagtatacctatgcaa-----atgctcctgtatactttaaatcatctctagattatttataatgcctaatacagtgtaaatgctacataaatagttgctatactgtactgctcttatttgtatttttagttgttatac-----tttctca--agttatctttgatgtgtggttgaatttgtggatgcggagcccgtgggtatcgagggctgCTTGTACCCTAGAAAC-AGAAATGGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41121971 428 + 50109623 GTTTCT----GCTGGGTCCGACTCA----AGAGTGCTGAGTGGTGGGGTCTGTCTGCCTTCAG----------------------------AGCAGCA---CCTC-TGCGTTTCCA----CAGCTGCAAGGGG-ACGGGGTTATGGGCAGTGGAATagttgtgtctgggtatcctggaggggattggtgccaggacccccagtaaataccaaaatccaaggatgctcaggttccttatgtaaaatggcatagtatacctatgcaa-----atgctcctgtatactttaagtcatctctagattatttataatgcctaatacagtgtaaatgctacataaatagttgctatactgtactgctcttatttgtatttttagttgttatac-----tttctca--agttatctttgatgtgtggttgaatttgtggatgcggagcccgtgggtatcgagggctgCTTGTACCCTAGAAAC-AGAAATGGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3144252 427 + 4464012 GTTTCT----GCTGGGTCCGACTCA----AGAGTGCTGAGTGGTGGGGTCTGTCTGCCCTCAG----------------------------AGCAGCA---CCTC-TGCGTTTCCA----CAGCTGCAAGGGG-ACGGGGTTATGAGCAGTGGAATagttgtgtctgggtatcctgg-ggggattggtgccaggacccccggtaaataccaaaatccaaggatgctcaggttccttatgtaaaatggcatagtatacctatgcaa-----atgctcctgtatactttaaatcatctctagattatttataatgcctaatacagtgtaaatgctacataaatagttgctatactgcactgctcttatttgtatttttagttgttatac-----tttctca--agttatctttgatgtgtggttgaatttgtggatgcggagcctgtgggtatcgagggctgcttgTACCCTAGAAAC-AGAAATGGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106640876 422 - 115148730 GTTTCT----GCTGGGTCCGACTC-----AGAGTGCTGAGTGGTGGGGTCTGTCTGCCCTCAG----------------------------AGCAGCA---CCTC-TGCGTTTCCA----CAGCTGCAAGGGG-ATAGAGTTATGGGCAGTGGAATagttgtctctgggtatcctggaggggattggtgccaggacccccggtaaataccgaaatccaaggatgctcaggttccttatgtaaaatggcatagtatacctatgcat-----atgctcctgtatactttaaatcatctctag----tttataatacctaatacagtgtaaatgctacataagtagtggctatactgtactgctCTTATTTGTATTTTTAGTTGTTATAC-----TTTTTCA--AG-TATCTTCAATGTGTGGTTGAATTTGTGGATGTGGAGCCTGTGGGTATCGAGGGTTGCTAGTACCCTAGAAAC-AGAAAAGGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84256100 434 + 92844088 GTTTCTGTTGGTTGGGTCTGACTCATCCCCGAGTGCTGAGTGGCAGG----GTCTGCCCTCAG----------------------------AGCAGCA---CCTC-TGAGTTTCCA----CAGCTGCAAGGGG-GTGGGATTATGGGCAGTGGAATagttatctctgggtatcctggaggggattggtgcctggatccccggtaaatactgaaatccaaggatgctcaagttccttatgtaaaattgcatagtatacctatgcat-----atgctcctgtatactttaaatcatctctagattatttataatacctaatacagtgtaaatactacgtaaatagttgctatactgtactgctcttatttgtatttttagttgttatgc---tttttttcc--aagtatcttcgatgtgtggctgagtttgtggatgtggagcctgtgggtactgagggctgcctgTACCCtagaaac-agagatgga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87601109 430 - 96509753 GTTTCT----GTTGGGTCTGACTCATCCCCGAGTGCTGAGTGGCAGG----GTCTGCCCTCAG----------------------------AGCAGCA---CCTC-TGAGTTTCCA----CAGCTGCAAGAGG-GTGGGATTATgggcagtggaatagttatctctgggtatcctggaggggattggtgcctggatccccggtaaatactgaaatccaaggatgctcaagttccttatgtaaaattgcatagtatacctatgcat-----atgctcctgtatactttaaatcatctctagattatttataatacctaatacagtgtaaatactacgtaaatagttgctatactgtactgctcttatttgtatttttagttgttatgc---tttttttcc--aagtatcttcgatgtgtggctgagtttgtggatgtggagcctgtgggtactgagggctgcctgtaccctagaaac-agagatgga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7092825 430 - 13098629 GTTTCT----GTTGGGTCTGACTCATCCCCGAGTGCTGAATGGCAGG----GTCTGCCCTCAG----------------------------AGCAGCA---CCTC-TGAGTTTCCA----CAGCTGCAAGAGG-GTGGGATTATGGGCAGTGGAATagttatctctgggtatcctggaggggattggtgcctggatccccggtaaatactgaaatccaaggatgctcaagttccttatgtaaaattgcatagtatacctatgcat-----atgctcctgtatactttaaatcatctctagattatttataatacctaatacagtgtaaatactatgtaaatagttgctatactgtactgctcttatttgtatttttagttgttatgc---tttttttcc--aagtatcttcgatgtgtggctgagtttgtggatgtggagcctgtgggtactgagggctgcctgTACCCtagaaac-agagatgga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4059353 431 - 4483953 CTTTCT----GTTGGGTCTGACTCATCCCCGAGTGCTGAGTGGCAGG----GTCTGCCCTCAG----------------------------AGCAGCA---CCTC-TGAGTTTCCA----CAGCTGCAAGGGG-GTGGGATTATGGGCAGTGGAATagttatctctgggtatcctggaggggattggtgcctggatccccggtaaataccgaaatccaaggatgctcaagtttcttatgtaaaattgcatagtatacctatggat-----atgctcctgtatactttaaatcatctctagattatttataatacctaatacagtgtaaatactacgtaaatagttgctatactgtactgctcttatttgtatttttagttgttatac--ttttttttcc--aagtatcttcgatgtgtggctgagtttgtggatgtggagcctgtgggtactgagggctgcctgTACCCtagaaac-agagatgga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24690128 431 + 33263144 GTTTCT----GTTGGGTCTGACTCGTCCCCGAGTGCTGAGTGGCAGG----GTCTGCCCTCAG----------------------------AGCAGCA---CCTC-TGAGTTTCCA----CAGCTGCAAGGGG-GTGGGATTATgggcagtggaatagttatctctgggtatcctggaggggactggtgcctggatccccggtaaataccgaaatccaaggatgctcaagttccttatgtaaaattgcatagtatacctatgcat-----atgctcctgtatactttaaatcatctctagattatttataatacctaatacagtgtaaatactatgtaaatagttgctatattgtactgctcttatttgtatttttagttgttatac--ttttttttag--aagtatcttcgatgtgtggctgagtttgtggatgtggagcctgtgggtactgagggctgcctgtaccctagaaac-agagatgga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13964308 431 - 14338769 GTTTCT----GTTGGGTCTGACTCATCCCCGAGTGCTGAGTGGCAGG----GTCTGCCCTCAG----------------------------AGCAGCA---CCTC-TGAGTTTCCA----CAGCTGCAAGGGG-GTGGGATTATGGGCAGTGGAATagttatctctgggtatcctggaggggattggtgcctggatccccggtaaataccgaaatccaaggatactcaagttccttatgtaaaattgcatagtatacctatgtat-----atgctcctgtatactttaaatcatctctagattatttataatacctaatacagtgtaaatgctacataaatagttgctatactgtactgctcttatttgtatttttagttgttacac--ttttttttcc--aagtatcttcgatgtgtggctgagtttgtggatgtggagcctgtgggtactgagggctgcctgTACCCtagaaac-agagatgga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 907563 430 + 1946073 GTTTCT----GTTGGGTCTGACTCATCCCCGAGTGCTGAGTGGCAGG----GTCTGCCCTCAG----------------------------AGGAGCA---CCTCTTGAGTTTCCA----CAGCTGCAAGGGG-GTGGGATTATGGGCAGTGGAATagttgtctctgggtatcctggaggggactggtgccaggatccccggtaaataccgaaatccaaggatgctcaggttccttatgtaaaattgcatagtatacctatgcat-----atgctcctgtatactttaaatcatctctagattatttataatacctaatacagtgtaaatactatgtaagtagctgctatactgtactgctctaatttgtatttttagttgttatac--ttttttttcc--aagtatcttcgatgtgtggct--gtttgtggatgtgaagcctgtgggtactgagggctgcctgTACCCTAGAAAC-AGAGATGGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1936596 422 - 2117846 GTTTCT----ATTGGGTCTGACTCA----AGAGTGCTGAGTGGCAGA----GCCTGTCCTCAG----------------------------AGCAGCAGGGCACC-TGCATTTCCA----CAGGTACAAGGTG-GTGGGACTGCAGGCAATGGAATagttgtctctgggtatcctggagaggactggtgccag--------gtaaataccaaaatccaaggacgctcaggttccttatgtaaaatggcagagtatacctatgcat-----atcctcccgtatactttaaatcatctctag---atttataatacctaatacaatataaatgctgtgtaaatagttgctatcccgtactgctcttatttgtatttttagttgttatactttttttttttccaaaatatcttctatgtgtggttgaatttgtagacatggagcctgt-ggtattgagggctgcctgTACTCTACGAAC-AGAAATGAA i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8851664 422 - 16357246 GTTTCT----ATTGGGTCTGACTCA----AGAGTGCTGAGTGGCAGA----GCCTGTCCTCAG----------------------------AGCAACAGGGCACC-TGCATTTCCA----CAGGTACAAGTGG-GTGAGACTGTATGCAGTGGAATagttgtctctgggtatcctggaggggactggtgccag--------gtaaataccaaaatccaaggacactcaggttccttatgtaaaatggcggagtatacctatgcat-----atgctcccgtttactttaaaccatctctag---atttataatacctaatacaatgtaaatgctgtgtaaatagttgctataccatactgctcttatttgtatttttagttatgcttttctttttttttcc-aaatatcttctatgtgtggttgaatttgtggacgtggagcctgt-ggtattgagcgctgcctATACTCTACGAACTAGAAATGGA i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1334180 420 - 1807191 GTTTCT----ATTGGGTGTGACTCA----AGAGTGCTGAGTGGCAGA----GCTTGTCCTCAG----------------------------AGCAGCAGGGCACC-TGCATTTCCA----CAGGTACAAGGGG-GTGGGACTGCAGACAGTGGAATagttttctctgggtatcctggaagggactggtgccag--------gtaaataccaaaatccaaggacgctcaggttccttacgtaaaatggcagagtatacctatgcat-----atgctcccgtatactttaaatcatttctag---agttataatacctaatacagtgtaaatgctgtgtaaatagttgctataccgtactgctCTTATTTGTATTTTTGGTTGTTATGCTTTTCCCCCCCC--AAATATCTTCTATGTGTGGTTGAATTTGTGGACGTGGAGCCTGT-GGTATTGAGGGCTGCCTGTACTCTATGAAC-AGAAATGGA i cebCap1.NW_016107750v1 C 0 I 450 s aotNan1.NW_018512383v1 11766 420 + 5963231 GTTTCT----ATTGGGTCTGACTTA----AGAGTGCTGAGTGGCAGA----GCCTGTCCTCAG----------------------------AGCAGCAGGGCACC-TGCATTTCCA----CAGGTACAAGGGG-GTGGGACTGCAGGCAGTGGAATagttgtctttgggtatcctggaggggactggtgccag--------gtgaataccaaaatccaaggacgctcaggttccttatgtaaaatggcagagtatacctatgcat-----atgctcccgtatactttaaattatctctag---atttataatacctaatacaatgtaaatgctgtataagtagttgctataccgtactgctcttatttgtatttttagttgttatcctttttttttttc--aaatatcttctatgtgtggttgaatttgtggacgtggagcctgt-ggtattgagggctgcctgTACTCTACGAAC-AGAAATGGA i aotNan1.NW_018512383v1 C 0 I 1999 s otoGar3.GL873526 36278880 397 - 42659167 GTTTCT----G-TGGGCCTGAC-------TGAGTGCTGAGGGGAGGA----GTCAGCACCCTGGGTCAGGATGCCTGGTTGGTGGTCTTCCAGTAGCAGGGCATC-TGCAGTTAGACAAGCAGGCACAGGGAGTGAGGGGTTATGGGCAGTGGAGTTgtcatctctgggtatcctg-------tgggttccaggaccc-----------------ctaaggatgctcgggtcccttacat-aaatggcagagtttacatataaactatggattctcttatacatttcaaattatctccagattacttataatgcctaata-----------------atatagttattatactatatggtttgta-ttatttTTTCAGTTACAGCTT-----TTCACCC--A---------------TAGTTAAA----CAGATGCGGAAACTGTGGTTACAAAGGGCTAACTACGTTCTAGAAAC-AG--ATCGA i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078958 418 - 69331447 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I a score=18175.000000 s hg38.chr22_GL383582v2_alt 67711 6 + 162811 aagctc s panTro5.chr22 28848074 6 + 37823149 AAGCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41122399 6 + 50109623 AAGCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3144679 6 + 4464012 AAGCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106641298 6 - 115148730 AAGCTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84256534 5 + 92844088 aag-tc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87601539 5 - 96509753 aag-tc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7093255 5 - 13098629 aag-tc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4059784 5 - 4483953 aag-tc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24690559 5 + 33263144 aag-tc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13964739 5 - 14338769 aag-tc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 907993 6 + 1946073 AAGCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1937019 5 - 2117846 Ggg-tc i calJac3.chrUn_GL286373 I 1 I 1864 s saiBol1.JH378157 8852087 5 - 16357246 Ggg-tc i saiBol1.JH378157 I 1 I 286 s otoGar3.GL873526 36279277 6 - 42659167 AAGGTT i otoGar3.GL873526 C 0 I 3 e aotNan1.NW_018512383v1 12186 1999 + 5963231 I e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078958 418 - 69331447 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e cebCap1.NW_016107750v1 1334600 450 - 1807191 I a score=222783.000000 s hg38.chr22_GL383582v2_alt 67717 43 + 162811 caggggcagggccagcctgcaggggggcagtttaatgggtaaa s panTro5.chr22 28848080 43 + 37823149 CAGGGGCAGGGTCAGCCTGCATGGGGGCAgtttaatgggtaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41122405 43 + 50109623 CAGGGGCAGGGCCAGCCTGCATGGGGGCAgtttaatgggtaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3144685 43 + 4464012 CAGGGGCAGGGCCAGCCTGCAGGGGGGCAgtttaatgggtaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106641304 43 - 115148730 CAGCGGCAGGGCCGGCTTGCAGGGGGGCAgtttaatgggtaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84256539 43 + 92844088 caggggcaggatgggcctgcaggggggcagtttaatgggtaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87601544 43 - 96509753 caggggcaggatgggcctgcaggggggcagtttaatgggtaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7093260 43 - 13098629 caggggcaggatgggcctgcaggggggcagtttaatgggtaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4059789 43 - 4483953 caggggcaggatgggcctgcaggggggcagtttaatgggtaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24690564 43 + 33263144 caggggcaggatgggcctgcaggggggcagtttaatgggtaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13964744 43 - 14338769 caggggcaggatgggcctgcaggggggcagtttaatgggtaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 907999 28 + 1946073 CAGGGGCAGGATGGGCCTGCAGGGAGGC--------------- i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36279286 32 - 42659167 AAGGAGCTGGGACAGCCTGTAGCAGAGTAGGT----------- i otoGar3.GL873526 I 3 C 0 e aotNan1.NW_018512383v1 12186 1999 + 5963231 I e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078958 418 - 69331447 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e cebCap1.NW_016107750v1 1334600 450 - 1807191 I e saiBol1.JH378157 8852092 286 - 16357246 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=28314.000000 s hg38.chr22_GL383582v2_alt 67760 6 + 162811 gcttcc s panTro5.chr22 28848123 6 + 37823149 gcttca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41122448 6 + 50109623 gcttca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3144728 6 + 4464012 gcttca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106641347 6 - 115148730 gcttca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84256582 6 + 92844088 gtttca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87601587 6 - 96509753 gtttca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7093303 6 - 13098629 gtttca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4059832 6 - 4483953 gtttca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24690607 6 + 33263144 gtttga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13964787 6 - 14338769 gtttca i manLeu1.NW_012102031v1 C 0 C 0 s saiBol1.JH378157 8852378 6 - 16357246 gtttca i saiBol1.JH378157 I 286 C 0 e aotNan1.NW_018512383v1 12186 1999 + 5963231 I e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078958 418 - 69331447 I e otoGar3.GL873526 36279318 0 - 42659167 C e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e cebCap1.NW_016107750v1 1334600 450 - 1807191 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I e colAng1.NW_012115588v1 908027 0 + 1946073 C a score=721429.000000 s hg38.chr22_GL383582v2_alt 67766 98 + 162811 gttttataaaatgaaaaa-ttctggagattggttgcacaacaatctgaacacattt---cccactaaactgtactgtgactgttatgatggtacatt-----ttttt s panTro5.chr22 28848129 98 + 37823149 gttttataaaatgaaaaa-ttctggagattggttgcacaacaatctgaacacattt---cccactaaactgtactgtgactgttatgatggtacatt-----ttttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41122454 98 + 50109623 gttttataaaatgaaaaa-ttctggagattggttgcacaacaatctgaacacattt---cccactaaactgtactgtgactgttatgatggtacatt-----ttttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3144734 98 + 4464012 gttttataaaatgaaaaa-ttctggagattggttgcacaacaatctgaacacattt---cccactaaactgtactgtgactgttatgatggtacatt-----ttttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106641353 102 - 115148730 gttttataaaatgaaaaagttctggagattggttgcacaacaatgtgaacacatttaccaccactaaactgtactgtgactgttatgatggtacatt-----ttttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84256588 102 + 92844088 gtttcataaaatgaaaaagttctgaagattggttgcacaacaatgtgaacacacttaacaccactaaactgtaccataactgttatgatggtaaatt-----ttttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87601593 102 - 96509753 gtttcataaaatgaaaaagttctgaagattggttgcacaacaatgtgaacacacttaacaccactaaactgtaccataactgttatgatggtaaatt-----ttttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7093309 102 - 13098629 gtttcataaaatgaaaaagttctgaagattggttgcacaacaatgtgaacacacttaacaccactaaactgtaccataactgttatgatggtaaatt-----ttttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4059838 102 - 4483953 gtttcataaaatgaaaaagttctgaagattggttgcacaacaatgtgaacacacttaacaccactaaactgtaccataactgttatgatggtaaatt-----ttttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24690613 102 + 33263144 gtttcataaaatgaaaaagttctgaagattggctgcacaacaatgtgaacacacttaccaccactaaactgtaccataactattatgatggtaaatt-----ttttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13964793 102 - 14338769 gtttcataaaatgaaaaagttctgaagattggctgcacaacaatgtgaacacacttaccaccactaaactgtaccataactgttatgatggtaaatt-----ttttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 908027 85 + 1946073 -----------------agttctgaagattggttgcacaacaatgtgaacacacttaacaccactaaactgtaccgtaactgttatgatggtaaatt-----ttttt i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8852384 107 - 16357246 gttttataaaatgaaaagtttctggagatcagctgcataacaatgtgaacacacttaacaccactgaactgtaccataactgttatgatggtaaattttgtttttta i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1335050 106 - 1807191 gttttataaaatgaaaaa-ttctggggatcagctgcctaacaatgtgaacacacttaacaccactgaactgtaccataactgttatgatggtaaattttgtgtttta i cebCap1.NW_016107750v1 I 450 C 0 s otoGar3.GL873526 36279318 86 - 42659167 -ttttgcaagatgaaaaggttctaga---ctgttgcacaaaaacatgaatatactcagcaccatta------------actgttaagatggtaactt-----ttttt i otoGar3.GL873526 C 0 I 2082 e aotNan1.NW_018512383v1 12186 1999 + 5963231 I e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078958 418 - 69331447 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=1258138.000000 s hg38.chr22_GL383582v2_alt 67864 171 + 162811 aaccacaatttaaaaaCTTTATGAG-Tatta-----------aaaaaataaatggctatatacacacctattagaatggcttaaatccagaacactgacaacaccaaatgctggcaaggatgtggagcatcaggaactc--attcattgctggtgggagtacaaaatggtacagacactttggaa s panTro5.chr22 28848227 172 + 37823149 aaccacaatttaaaaaCTTTATAAG-Tatta-----------aaaaaa-aaatggctatatacacacctattagaatggcttaaatccagaacactgacaacaccaaatgctggcaaggatgtggagcatcaggaactctcattcattgctggtgggagtacaaaatggtacagacactttggaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41122552 173 + 50109623 aaccacaatttaaaaaCTTTATAAG-TATTA-----------AAAAAATAAATGGCTATAtacacacctattagaatggcttaaatccagaacactgacaacaccaaatgctggcaaggatgtggagcatcaggaactctcattcattgctggtgggagtacaaaatggtacagacactttggaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3144832 173 + 4464012 aaccacaatttaaaaaCTTTTTAAG-Tatta-----------aaaaaataaatggctatatacacacctattagaatggcttaaatccagaacactgacaacaccaaatgctggcaaggatgtggagcatcaggaactctcattcattgctggtgggagtacaaaatggtacagacactttggaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106641455 173 - 115148730 aaccacaatttaaaaaCTTTTTAAG-Tatta-----------aaagaataaatggctatatacacacctattagaatggcttaaatccagaacactgacaccaccaaatgctggcaaggatgtggagcatcaggaactctcattcattgctggtgggagtataaaacggtacagacactttggaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84256690 174 + 92844088 agccacaatttaaaaaCTTTTAAAGTTATTC-----------Aaaaaataaatggccacatacacacctgttagaatggcttaaatccagaacactgacaccaccaaatgctggcaaggatgtggaccatcaggaactctcattcattgctggtgggagtacaaaatggtacagatactttggaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87601695 174 - 96509753 agccacaatttaaaaaCTTTTAAAGTTATTC-----------Aaaaaataaatggccacatacacacctgttagaatggcttaaatccagaacactgacaccaccaaatgctggcaaggatgtggaccatcaggaactctcattcattgctggtgggagtacaaaatggtacagatactttggaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7093411 174 - 13098629 agccacaatttaaaaaCTTTTAAAGTTATTC-----------AAAAAATAAATGGccacatacacacctgttagaatggcttaaatccagaacactgacaccaccaaatgctggcaaggatgtggaccatcaggaactctcattcattgctggtgggagtacaaaatggtacagatactttggaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4059940 174 - 4483953 agccacaatttaaaaaCTTTTAAAGTTATTC-----------AAAAAATAAATGGccacatacacacctgttagaatggcttaaatccagaacactgacaccaccaaatgctggcaaggatgtggaccatcaggaactctcattcattgctggtgggagtacaaaatggtacagatactttggaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24690715 168 + 33263144 agccacaatttaaaaaCTT------TTATTC-----------Aaaaaataaatggccacatacacacctgttggaatggcttaaatccagaacactgacaccaccaaatgctggcaaggatgtggaccatcaggaactctcattcattgctggtgggagtacaaaatggtacggacactttggaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13964895 174 - 14338769 agccacaatttaaaaaCTTTTAAAGTTATTC-----------AAAAAATAAATGGccacatacacacctgttagaatggcttaaatccagaacactgacaccaccaaatgctggcaaggatgtggaccatcaggaactctcgttcattgctggtgggagtacaaaatggtacagatactttggaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 908112 174 + 1946073 agccacaatttaaaaaCTTTTAAAGTTATTC-----------AAAAAATAAATGGccacgtacacacctgttagaatggcttaaatccagaacactgacaccaccaaatgctggcaaggatatggaccatcaggaactctcattcattgctggtgggagtacaaaatggtacagacactttggaa i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8852491 185 - 16357246 aacaacaatgtaaaaacgttagaagttatttaaaaaaaaaaaaaaaaaaaaaaagccacttacacactcattagaatagctcaaaaccggaacacggacagcaccaaacgctggcaaggatgtggagcatcaggaactctagttcattgctggtgggaatacaaaatggtacagacactctggaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1335156 173 - 1807191 aatcacaatgtaaaaaCTTTAAAAGTTACtt------------aaaaaaaaaaggccacttacacacacattagaatagctcaaatccagaacacggacagcaccaaacgctggcaaggatgtggagcatcaggaactctagttcattgctggtgggaatacaaaatggtacagacattctggaa i cebCap1.NW_016107750v1 C 0 I 24 e aotNan1.NW_018512383v1 12186 1999 + 5963231 I e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078958 418 - 69331447 I e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=230794.000000 s hg38.chr22_GL383582v2_alt 68035 54 + 162811 gaaagtttggcaatttcttttccttttctcag---ttttttttttttttttt-ttttt s panTro5.chr22 28848399 49 + 37823149 gaaagtttggcaatttcttttccttttttcaa---ttttttttttttttttt------ i panTro5.chr22 C 0 C 0 s panPan2.chr22 41122725 49 + 50109623 gaaagtttggcaatttcttttccttttttcaa---tttttttttttttttgt------ i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3145005 47 + 4464012 gacagtttggcaatttcttttccttttttcaa---ttttttttttttttt-------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106641628 55 - 115148730 gacagtttggcaatttcttttccttttttcaa---ttttttttttttttttttttttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84256864 52 + 92844088 gacagtttggcaatttcttttccattcttcaatttttttttttttttttttt------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87601869 52 - 96509753 gacagtttggcaatttcttttccattcttcaatttttttttttttttttttt------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7093585 49 - 13098629 gacagtttggcaatttcttttccattcttcaa---ttttttttttttttttt------ i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4060114 49 - 4483953 gacagtttggcaatttattttccattcttcaa---ttttttttttttttttt------ i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24690883 47 + 33263144 gacagtttggcaatttcttttccattcttcaa-----ttttttttttttttt------ i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13965069 50 - 14338769 gacagtttggcaatttcttttccattcttcaa--tttttttttttttttttt------ i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 908286 47 + 1946073 gacagttgggcaatttcttttccattcttcta-----ttttttttttttttt------ i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8852676 25 - 16357246 aacagtttggcaAtttttttttttt--------------------------------- i saiBol1.JH378157 C 0 C 0 e aotNan1.NW_018512383v1 12186 1999 + 5963231 I e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078958 418 - 69331447 I e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e cebCap1.NW_016107750v1 1335329 24 - 1807191 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=1554804.000000 s hg38.chr22_GL383582v2_alt 68089 233 + 162811 gagacagagtctcactcactctgtcacccaggctaggagtgcagtggcacgatgatctcagctcactggaacctttgcctcctgcgttcaagcaatcctcccacctcagcctcccgtttagctgggactgcaggcgtgagccaccatgcctggctgatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc s panTro5.chr22 28848448 233 + 37823149 gagacagagtctcactcactctgtcacccaggctaggagtgcagtggcacgatgatctcagctcactggaacctttgcctcctgcgttcaagcaatcctcccacctcagcctcccgtttagctgggactgcaggcgtgagccaccatgcctggctgatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41122774 232 + 50109623 -agacagagtctcactcactctgtcacccaggctaggagtgcagtggcacgatgatctcagctcactggaacctttgcctcctgcgttcaagcaatcctcccacctcagcctcccgtttagctgggactgcaggcgtgagccaccatgcctggctgatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3145052 233 + 4464012 gagacagagtctcactcactctgtcacccaggctaggagtgcagtggcacgatgatctcagctcactggaacctctgcctcctgcgttcaagcaatcctcccacctcagcctcccgagtaggtgggactgcaggcgtgagccaccatgcctggctgatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106641683 233 - 115148730 gagacagagtctccctcactctgtcacccaggctaggagcgcagtggcacgatgatctcagctcactggcacctttgcctcctgggttcaagcaatcctcccacctcagcctcccgagtagctgagactacaggcgtgagccatcatgcctggctgatttttgtatttttagtagagacagggtttcaccatgttggccagactggtctcaaactcctgacctcaggtgatcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84256916 227 + 92844088 ttttttGAGTCTCAGtcactctgttacccaggctaggagtgcagtggt---gtgatctcagctcactggaacctctgccttctaggttcaagcaatcctcccacctcagcctcccgagtagctgggactgcaggcatga---accatgtccagctgatttttgtacttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87601921 227 - 96509753 ttttttgagtctcagtcactctgttacccaggctaggagtgcagtggt---gtgatctcagctcactggaacctctgccttctaggttcaagcaatcctcccacctcagcctcccgagtagctgggactgcaggcatga---accatgtccggctgatttttgtacttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7093634 227 - 13098629 ttttttgagtctcagtcactctgttacccaggctaggagtgcagtggt---gtgatctcagctcactggaacctctgccttctaggttcaagcaatcctcccacctcagcctcccgagtagctgggactgcaggcatga---accgtgtccggctgatttttgtacttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4060163 227 - 4483953 gagacggagtctcagtcactctgttacccaggctaggagtgcagtggt---gtgatctcagctcactggaacctctgccttctaggttcaagcaatcctcccacctcagcctcccgagtagctgggactgcaggcatga---accatgtccggctgatttttgtacttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24690930 230 + 33263144 gagacggagtctcagtcactctgttacccaggctaggagtgcagtggt---gtgatctcagctcactggaacctctgccttctaggttcaagcaatcctcccacctcagcctcccgagtagctgggactgcaggcgtgaaccaccatgtccggctgatttgtgtatttttagtagagacagggtttcaccatgttggccgggctggtctcaaactcctgacctcaggtgatcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13965119 227 - 14338769 gagatggagtctcagtcactctgttacccaggctaggagtgcagtggt---gtgatctcagctcactggaacctctgccttctaggttcaagcaatcctcccacctcagcctctcgagtcgctgggactgcaggcatga---accatgtccggctgatttttgtacttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 908333 225 + 1946073 gagtcggagtctcagtcactctgttacccaggctaggagtgcagtggc---gtgatctcagctcactggaacctctgcctcctaggttcaagcaatcctcccacctcagcctcctgagtagctgggactgcaggcatgaaccaccatgtccggctgatttt-----ttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8852701 155 - 16357246 gggacagagtc----tcactctgtcact-------------------------------------------------------------------------cacctcagcctcccgagtagctgggactgcaggtgtgagccaccatgcccggctcatttttgtagtttcggtagggacaggatttcaccatgttggccaggctggtctcaaaatcttgacttca-gtaatcc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1335353 225 - 1807191 gggacagaatc----tcactctgtcactcaggctaggaatgcagtggc---gcaatctcagctcactacaaactctccctcctgggttcaagcgatcctcccatctcagcctcccgagtagctgggactgcaggtgtgagccaccatgcccggctcatttttgtagtttcggtagggacagaatttcaccatgttggccaggctggtctcaaaatcttgacttca-gtgatcc i cebCap1.NW_016107750v1 I 24 C 0 e aotNan1.NW_018512383v1 12186 1999 + 5963231 I e mm10.chr15 82794755 12113 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078958 418 - 69331447 I e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=570110.000000 s hg38.chr22_GL383582v2_alt 68322 70 + 162811 agacagtttggcaatttcttacaaaactagacatactcttaccatacaatccaccaatcgtgcttcctgt s panTro5.chr22 28848681 70 + 37823149 agacagtttggcaatttcttacaaaactagacttactcttaccatacaatccaccaatcgtgcttcctgt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41123006 70 + 50109623 agacagtttggcaatttcttacaaaactagacttactcttaccatacaatccaccaatcgtgcttcctgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3145285 70 + 4464012 agacagtttggcaatttcttacaaaactagacatactcttaccatacaatccaccaatcgtgcttcctgt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106641916 70 - 115148730 agacagtttggcaatttcttacaaaactagacatactcttaccatacaatccaccaactgtgcttcctgt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84257143 70 + 92844088 agacagtttggcaattttttacaaaactagacatactcttaccattcaatccaccaactgtgcttcctgt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87602148 70 - 96509753 agacagtttggcaattttttacaaaactagacatactcttaccattcaatccaccaactgtgcttcctgt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7093861 70 - 13098629 agacagtttggcaattttttacaaaactagacatactcttaccatacaatccaccaactgtgcttcctgt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4060390 70 - 4483953 agacagtttggcaattttttacaaaactagacatactcttaccatacaatccaccaactgtgcttcctgt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24691160 70 + 33263144 agacagtttggcaattttttacaaaactagacatactcttaccatacaatccaccaactgtgcttcctgt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13965346 70 - 14338769 agacagtttggcaattttttacaaaactagacatactcttaccatacaatccaccaactgtgcttcctgt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 908558 70 + 1946073 agacagtttggcaatttcttacaaaactagacatactcttaccatacaatccaccaattgtgcttcctgt i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8852856 70 - 16357246 agacaatttggcagtttcttacaaaactagatatacttttaccatacaattcaccagttgtgctccctgt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1335578 70 - 1807191 agacagtttggcagtttcttacaaaactagacatactcttaccatacaattcaccagttgtgctccctgt i cebCap1.NW_016107750v1 C 0 C 0 s mm10.chr15 82806868 54 + 104043685 aggaagtttagcagttgcttatacaac-----atttctttaccatatgacacactgatc----------- i mm10.chr15 I 12113 C 0 e aotNan1.NW_018512383v1 12186 1999 + 5963231 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46078958 418 - 69331447 I e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=56350.000000 s hg38.chr22_GL383582v2_alt 68392 6 + 162811 acttac s panTro5.chr22 28848751 6 + 37823149 acttac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41123076 6 + 50109623 acttac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3145355 6 + 4464012 acttac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106641986 6 - 115148730 acttac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84257213 6 + 92844088 acttac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87602218 6 - 96509753 acttac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7093931 6 - 13098629 acttac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4060460 6 - 4483953 acttac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24691230 6 + 33263144 acttac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13965416 6 - 14338769 acttac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 908628 6 + 1946073 acttac i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8852926 6 - 16357246 acttac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1335648 6 - 1807191 acttac i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46079376 6 - 69331447 actgac i canFam3.chr10 I 418 C 0 e aotNan1.NW_018512383v1 12186 1999 + 5963231 I e mm10.chr15 82806922 0 + 104043685 C e dasNov3.JH570235 51915 153 + 1056298 I e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=3036878.000000 s hg38.chr22_GL383582v2_alt 68398 342 + 162811 ccaaaggagttgaggccttatgtccacacaaaaacctgcaaagggatgtttacagcagcttcatttgtaattgtcaaaacttgaaagcaaccaagatgttcttcag----cagttgaatggataaactgtggtacagccagacaatggaattatttat-cact--------aaaaagaaacaagctatcaagtcatgaaaagacacgggtgaaccttaaatgcacattactaag-tgaatgaagccaatctaaaaaaggctacctactatctaatctcaactatatgatactttggaaaaggcaaaactttgcagacagtaaaaggctcagcg---gtgagggactggggctaaggagg s panTro5.chr22 28848757 342 + 37823149 ccaaaggagttgagaccttatgtccacacaaaaacctgcaaagggatgtttacagcagcttcatctgtaattgtcaaaacttgaaagcaaccaagacgttcttcag----caggtgaatggataaactgtggtacagccagacaatggaattatttat-cact--------aaaaagaaacaagctatcaagtcatgaaaagacacggttgaaccttaaatgcacattactaag-tgaatgaggccaatctaaaaaaggctacctactatctaatctcaactatatgatactttggaaaaggcaaaactttggagacagtaaaaggctcagtg---gtgagggactggggctaaggagg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41123082 342 + 50109623 ccaaaggagttgagaccttatgtccacacaaaaacctgcaaagggatgtttacagcagcttcatctgtaattgtcaaaacttgaaagcaaccaagatgttcttcag----caggtgaatggataaactgtggtacagccagacaatggaattatttat-cact--------aaaaagaaacaagctatcaagtcatgaaaagacacggttgaaccttaaatgcacattactaag-tgaatgaagccaatctaaaaaaggctacctactatctaatctcaactatatgatactttggaaaaggcaaaactttggagacagtaaaaggctcagtg---gtgagggactggggctaaggagg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3145361 338 + 4464012 ccaaaggagttgagaccttatgtccacacaaaaacctgcaaagggatgtttacagcagcttcatctgtaattgtcaaaacttgaaagcaaccaagatattcttcag----caggtgaatggataaactgtggtacagc----caatggaattatttat-cact--------aaaaagaaacaagctatcaagtcatgaaaagacacggttgaaccttaaatgcacattactaag-tgaatgaagccaatctaaaaaaggctacctactatctaatctcaactatatgacactttggaaaaggcaaaactttggagacagtaaaaggctcagcg---gtgagggactggggctaaggagg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106641992 342 - 115148730 ccaaaggagttgagaccttatgtccacacaaaaacctgcaaagggatgtttacagcagctttatctgtaattgtcaaaacttgaaagcaaccacgatgttcttcag----caggtgaatggataaactgtggtagagtcagacaatggaattatttat-cact--------aaaaagaaacaagccatcaagtcatgaaaagacatggttgaaccttaaatgcacattaccaag-tgaatgaagccaatctaaaaagggttatctactatctaatctcaactatatgacacttcggaaaaggcaaaacttgggggacagtaaaaggctcagtg---gtgagggactgggggtaaggagg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84257219 331 + 92844088 ccaaaggagttgagaccttatgcccacacaaaaacctgcaaagggatgtttacagcagcttcatctttagttgtcagaacttgaaagcaaccaagatgttcttcag----caggtgaatggataaactgtggtacagc----caatggaattatttat-cact--------aaaaagaaacaagctatcaagtcatgaaaagacatggttgaaccttaaatgcacattactaag-tggatgaagccaatct-aaaaaggctacctactatataatctcaactatatgacactttggaaaaggcgtaactttgga------aaaaggctcagta---gtgagggactggggggaaggaag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87602224 331 - 96509753 ccaaaggagttgagaccttatgcccacacaaaaacctgcaaagggatgtttacagcagcttcatctttagttgtcagaacttgaaagcaaccaagatgttcttcag----caggtgaatggataaactgtggtacagc----caatggaattatttat-cact--------aaaaagaaacaagctatcaagtcatgaaaagacatggttgaaccttaaatgcacattactaag-tggatgaagccaatct-aaaaaggctacctactatataatctcaactatatgacactttggaaaaggcgtaactttgga------aaaaggctcagta---gtgagggactggggggaaggaag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7093937 331 - 13098629 ccaaaggagttgagaccttatgcccacacaaaaacctgcaaagggatgtttacagcagcttcatctttagttgtcagaacttgaaagcaaccaagatgttcttcag----caggtgaatggataaactgtggtacagc----caatggaattatttat-cact--------aaaaagaaacaagctatcaagtcatgaaaagacatggttgaaccttaaatgcacattactaag-tggatgaagccaatct-aaaaaggctacctactatataatctcaactatatgacactttggaaaaggcgtaactttgga------aaaaggctcagta---gtgagggactagggggaaggaag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4060466 330 - 4483953 ccaaaggagttgagaccttatgcccacacaaaaacctgcaaagggatgtttacagcagcttcatctttagttgtcagaacttgaaagcaaccaagatgttcttcag----caggtgaatggataaactgtggtacagc----caatggaattatttat-cact--------aaaaagaaacaagctatcaagtcatgaaaagacatggttgaaccttaaatgcacattactaag-tggatgaagccaatct--aaaaggctacctactatataatctcaactatatgacactttggaaaaggcgtaactttgga------aaaaggctcagta---gtgagggactggggggaaggaag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24691236 331 + 33263144 ccaaaggagttgagaccttatgcccacacaaaaaccagcaaagggatgtttacagcagcttcatctttagttgtcagaacttgaaagcaaccaagatgttcttcag----caggcgaatggataaactgtggtacagc----caatggaattatttgt-cact--------aaaaagaaacaagctatcaagtcatgaaaagacatggttgaaccttaaatgcacattactaag-tggatgaagccaatct-aaaaaggctacctactatataatctcaactataggacactttggaaaaggcataactttgga------aaaaggctcagta---gtgagggaggggggggaaggaag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13965422 330 - 14338769 ccaaaggagttgagaccttatgcccacacaaaaacctgcaaagggatgtttacagcagcttcatctttagttgtcagaacttgaaagcaaccaagatgttcttcag----caggtgaatggataaactgtggtacagc----caatggaattatttat-cact--------aaaaagaaacaagctatcaagtcatgaaaagacatggttgaaccttaaatgcacattactaag-tggatgaagccaatct--aaaaggctacctactatataatctcaactatatgacactttggaaaaggcgtaactttgga------aaaaggctcagta---gtgagggactggggggaaggaag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 908634 315 + 1946073 ccaaaggagttgagaccttatgcccacacaaaaacctgcaaagggatgtttacagcagcttcatctttaattgtcagaacttgaaagccaccaagatgttcttcag----caggtgaatggataaactgtggtacagc----caatggaattatttatccact--------aaaaagaaacaagctatcaagtcatgaaaagacgtggttgaaccttaaatgcacattactaag-tggatgaagccaatct-aaaaaggctacctactatataatctcaactctatgac-----------------actttgga------aaaaggctcagtg---gtgagggactggggggaaggagg i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8852932 336 - 16357246 ccaaagttgttgagacctcat-tccacacaaaaacctgcacagggatgtttacagcagctttatccataactgccaaaacttgaaagcaatcaagatgttcttcag----caggtgaatggattaactgtggaacatccagacagtgg----atttat-cact--------agaaagaaacaagctatcaagtcatgaaaagacattgttgaaccttaaatgtacat---tacg-tgaaagaagccaatct-aaaaaggctacctactacataatctcaactttatgacattttggaaaaggcaaaactttggatacagtaaaagcctcagtagttgtgagggactcgaggggaggagc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1335654 341 - 1807191 ccaaaggagttgagacctcatgtccacacaaaaacctgcacagggatgtttacagcagctttatccataactgccaaaccttgaaagcaaccaagatgttcttcag----caggtgaatggattaactgtggaacatccagacagtggatttatttat-cact--------agaaagaaacaagctatcaagtcatgaaaagacatggttgaaccttaaatgcacat---tacg-tgaaagccgccaatct-aaaaaggctacctactacataatctcaactttacgacattttggaaaaggcaaaactttggatatagtaaaaggctcagtagttgtgagggactcgagggaaggaga i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 14185 344 + 5963231 ccaaaggagttgagacctcatgtccacacaaaaacctgcacagggatgtttacagcagctttatccataactgccaaaacttgaaagcaaccaagatgttcttcag----caggtgaatggattaactgtggaacatccagacagtggatttatttat-cact--------agaaagaaacaagctatcaagtcatgaaaagacatggttgaaccttaaatgcacattactacg-tgaaagaagccaatct-aaaaaggctacctactacataatctcaactttataacattttggaaaaggcaaaactttcgatacagtaaaaggctcagtagttgtgagggactcgggggaaggaaa i aotNan1.NW_018512383v1 I 1999 C 0 s mm10.chr15 82806922 335 + 104043685 ----------tgaaaacgtgtgcttacacagaaacctgcacag---tatttatggtagctctatttataagtgcccaaa-ttggaagcaataaagatgtcctttggcaaacaggaagtaggaaaaactg-ggcatatctagacaatagagtatttttt-tggcagcaacaaaaaaaaaaatgaactttgtagccat--aaatacatgaaggaaccataaacatgtatcactaagttggaaacagccaatct-gaagtggctatacactgtatga--ctaactatacaccactctagaaaaggcaaaactatgatgatgataaaaagaccattggctgtcaggttttgga---aaggaag i mm10.chr15 C 0 I 78 s canFam3.chr10 46079382 296 - 69331447 ccagaggcgttgagaaccgatgtccacacaaaaatctgcacacagataattgtagcagctttattcacaatcgccaaaacttggaagcaaccaagatgtctctggg----gaggtga----gcaaaaggtaggacatctggacaat-----tcttcgg-tact--------aaaaagaaacgagctaccaagccac--caagacgtgggggacccttaaat----atcactgag-tgaaggaggcc--cct-gacaaggccacgcactataggattccagccatgcaacgatcaggaggcgggagggc---------------aggctgagcg---ctgaggagct------------- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 51915 153 + 1056298 I e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=421061.000000 s hg38.chr22_GL383582v2_alt 68740 58 + 162811 aatgaacagtgggacacggaggatccctggagcagtgaaactactctggatcatggtg s panTro5.chr22 28849099 58 + 37823149 aatgaacagtgggacacggaggatccctggagcagtgaaactactctggatcatggtg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41123424 58 + 50109623 aatgaacagtgggacacggaggatccctggagcagtgaaactattctggatcatggtg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3145699 58 + 4464012 aatgaacagtgggacacggaggatccctggagcagtgaaactactctggatcatggtg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106642334 58 - 115148730 aatcaacagtgggacacagaggatccctggggcagtgaaactactctggataatggtg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84257550 56 + 92844088 aatgaacagtgggaca--gaggatccctggggcagtgaaactactctggataatggtg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87602555 56 - 96509753 aatgaacagtgggaca--gaggatccctggggcagtgaaactactctggataatggtg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7094268 56 - 13098629 aatgaacagtgggaca--gaggatccctggggcagtgaaactactctggataatggtg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4060796 56 - 4483953 aatgaacagtgggaca--gaggatccctggggcagtgaaactactctgggtaatggtg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24691567 56 + 33263144 aatgaacagtgggaca--gaggatccctggggcagtgaaactactctggataatggtg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13965752 56 - 14338769 aatgaacagtgggaca--gaggatccctggggcagtgaaactactctgggtaatggtg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 908949 56 + 1946073 aatgaacagtgggaca--gaggatccctggggcagtgaaactactctgGAAAATGGTG i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8853268 56 - 16357246 a--gcacagtggaacacagaagatctctggggcagtgaaactactctggatcatgacc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1335995 53 - 1807191 a--gcacagtggaacac---agatctctggggcagtgaaattactctggatgataatg i cebCap1.NW_016107750v1 C 0 I 28 s aotNan1.NW_018512383v1 14529 54 + 5963231 a--gcacaatggaacag--aagatctctggggcagtgaaactactctggataatgatc i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46079678 22 - 69331447 --------------------------ctggggcagcggggcgactgtg---------- i canFam3.chr10 C 0 C 0 e mm10.chr15 82807257 78 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=86138.000000 s hg38.chr22_GL383582v2_alt 68798 17 + 162811 cgtcctcgtc-ttttt-------ga s panTro5.chr22 28849157 17 + 37823149 cgtcctcgtc-ttttt-------ga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41123482 17 + 50109623 cgtcctcgtc-ttttt-------ga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3145757 17 + 4464012 ggtcctcgtc-ttttt-------ga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106642392 24 - 115148730 ggtccatgtc-tttttttttttgga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84257606 21 + 92844088 ggtccacgtc-ttttttttt---ga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87602611 21 - 96509753 ggtccacgtc-ttttttttt---ga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7094324 21 - 13098629 ggtccacgtc-ttttttttt---ga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4060852 21 - 4483953 ggtccacgtc-ttttttttt---ga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24691623 21 + 33263144 ggtccacgtc-ttttttttt---ga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13965808 21 - 14338769 ggtccacgtc-ttttttttt---ga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 909005 22 + 1946073 GGCCCACGTCtttttttttt---ga i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8853324 18 - 16357246 ggtccacgtc----tttttt---ga i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 14583 22 + 5963231 ggcccatgtctttttttttt---ga i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46079700 3 - 69331447 -------------------t---ga i canFam3.chr10 C 0 C 0 e mm10.chr15 82807257 78 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e cebCap1.NW_016107750v1 1336048 28 - 1807191 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=74175.000000 s hg38.chr22_GL383582v2_alt 68815 7 + 162811 gacagga s panTro5.chr22 28849174 7 + 37823149 gacagga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41123499 7 + 50109623 gacagga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3145774 7 + 4464012 gacagga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106642416 7 - 115148730 gacagga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84257627 7 + 92844088 gacagga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87602632 7 - 96509753 gacagga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7094345 7 - 13098629 gacagga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4060873 7 - 4483953 gacagga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24691644 7 + 33263144 gacagga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13965829 7 - 14338769 gacagga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 909027 7 + 1946073 gacagga i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8853342 7 - 16357246 gacagga i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1336076 7 - 1807191 gacagga i cebCap1.NW_016107750v1 I 28 C 0 s aotNan1.NW_018512383v1 14605 7 + 5963231 gacagga i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46079703 7 - 69331447 cactgga i canFam3.chr10 C 0 C 0 e mm10.chr15 82807257 78 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=1341016.000000 s hg38.chr22_GL383582v2_alt 68822 155 + 162811 ttttgctgtcacccaggctgaagtgtggtggcgcgatcacgactcactgtagcctcgacctcctgggctcaagtgatcctcccatctcagcctcccaagtagctgagactacaggcatgcaccatcatgcctggctaatttttg-tatttttatgt s panTro5.chr22 28849181 155 + 37823149 ttttgctgtcacccaggctgaagtgtggtggcacgatcacgactcactgtagcctcgacctcctgggctcaagtgatcctcccatctcagcctcccaagtagctgagactacaggcatgcaccatcatgcctggctaatttttg-tatttttatgt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41123506 155 + 50109623 ttttgctgtcacccaggctgaagtgtggtggcacgatcacgactcactgtagcctcgacctcctgggctcaagtgatcctcccatctcagcctcccaagtagctgagactacaggcatgcaccatcatgcctggctaatttttt-gatttttatgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3145781 155 + 4464012 ttttgctgtcacccaggctgaagtgtggtggcgcgatcacgactcactgtagcctcgacctcctgggctcaagtgatcctcccatctcagcctcccaagtagctgagactacaggcatgcaccatcatgcctggctaatttttg-tatttttatgt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106642423 154 - 115148730 ttttgctgtcacccaggctgaagtgtggtggcgcgatcacgactcactgtagcctcgacctcctgggctcaagtgatcctcccatctcagcctcccaagtagccgagactacaggcgtgcaccatcatgcccgactaa-ttttg-tatttttatgt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84257634 155 + 92844088 ttttgctgttgcccaggctggagtgtggtggcgcgatcacggctcactgtagcctcgacctcctgggctcaagcgattctcccatctcagcctcccaaatagctgagactacaagcgtgcatcatcacgcctggctaatttttg-tatttttatgt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87602639 155 - 96509753 ttttgctgttgcccaggctggagtgtggtggcgcgatcacggctcactgtagcctcgacctcctgggctcaagcgattctcccatctcagcctcccaaatagctgagactacaagcgtgcatcatcacgcctggctaatttttg-tatttttatgt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7094352 155 - 13098629 ttttgctgttgcccaggctggagtgtggtggcgcgatcacggctcactgcagcctcgacctcctgggctcaagcaattctcccatctcagcctcccaaatagctgagactacaagcgtgcatcatcacgcctggctaatttttg-tatttttatgt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4060880 155 - 4483953 ttttgctgttgcccaggctggagtgtggtggcacgatcacagctcactgtagcctcgacctcctgggctcaagcgattctcccatctcagcctcccaaatagctgagactacaggcgtgcatcatcacgcccggctaatttttg-tatttttatgt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24691651 155 + 33263144 ttttgctgttgcccaggctggagtgtggtggcgcgatcacggctcactgtagcctcgacctcctgggctcaagcgattctcccatctcagcctcccaaatagctgagactacaggcgtgcatcatcacgcccagctaatttttg-tatttttatgt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13965836 155 - 14338769 ttttgctgttgcccaggctggagtgtggtggcgcgatcacggctcactgtagcctcgacctcctgggctcaagcgattctcccatctcagcctcccaaatagctgagactacaggcgtgcatcatcacgcccggctaatttttg-tatttttatgt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 909034 156 + 1946073 ttttgctgtcgcccaggctggagtgtggtggcgcaatcacggcttactgtagccttgacctcctgggctcaagcgattctcccatctcagccttccaaagagctgagactacaggtgtgcaccatcacgccttgctaatttttgttatttttatgt i colAng1.NW_012115588v1 C 0 I 111 s saiBol1.JH378157 8853349 155 - 16357246 ttttgctgtcgtccagactggagcatggtggcatgatcacagctcactgtagccttgaccacctaggctcaagcgatcctcccatctcagcctcccaagtagctgagactacaggtgcatactaccacgcctggttaatttttc-tatttttacat i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1336083 155 - 1807191 ttttcctgtcatccaggctggagcgtggtggcgtgatcacagctcattgcagccttgaccacctaggctcaagcgatcctcccatctcagcctcccaagcagctgagactacaggtgcatactaccatgcctggttaatttttg-tatttttacgt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 14612 155 + 5963231 ttttgctgtcgtccaggctggagtgtggtggtgtgaccacagcttactgtagccttgaccacctaggctcaagcgatcctcccatctcagcctcccaagtagctgagactacaggtgcatactaccatgcctggttaatttttg-tatttttacgt i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82807257 78 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46079710 0 - 69331447 C e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=33544.000000 s hg38.chr22_GL383582v2_alt 68977 4 + 162811 agag s panTro5.chr22 28849336 4 + 37823149 agag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41123661 4 + 50109623 agag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3145936 4 + 4464012 agag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106642577 4 - 115148730 ggag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84257789 4 + 92844088 agag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87602794 4 - 96509753 agag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7094507 4 - 13098629 agag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4061035 4 - 4483953 agag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24691806 4 + 33263144 agag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13965991 4 - 14338769 agac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 909301 4 + 1946073 agag i colAng1.NW_012115588v1 I 111 C 0 s saiBol1.JH378157 8853504 4 - 16357246 agag i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1336238 4 - 1807191 aggg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 14767 4 + 5963231 agag i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82807257 78 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e canFam3.chr10 46079710 0 - 69331447 C e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=815162.000000 s hg38.chr22_GL383582v2_alt 68981 111 + 162811 atggggtttcgcc-atgttgcccaggctgttctcgaactcaagc---gatacacccacctgagcctcccaaaatgctgggatt-------ataggcgagagccaccacgccctgccagatcc s panTro5.chr22 28849340 111 + 37823149 atggggtttcgcc-atgttgcccaggctgttctcgaactcaagc---gatacgcccacctgagcctcccaaaatgctgggatt-------ataggcgagagccaccacgccctgccagatcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41123665 111 + 50109623 atggggtttcgcc-atgttgcccaggctgttctcgaactcaagc---gatacgcccacctgagcctcccaaaatgctgggatt-------ataggcgagagccaccacaccctgccagatcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3145940 111 + 4464012 atggggtttcgcc-atgttgcccaggctgttctcgaactcaagc---gatccgcccacctgagcctcccaaaatgctgggatt-------ataggcgagagccaccatgccctgccagatcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106642581 111 - 115148730 atggggtttcacc-atgttgcccaggctgttctcgaactcaagc---gatccgcccacctgagcctcccaaaatgctgggatt-------ataggtgagaggcaccacaccctgccagatcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84257793 106 + 92844088 agggggtt---------ttgcccaggctgttctcgaattcaagccttgatctgcccacctgagcctcccaaaatgctgggatt-------ataggcatgagccaccacaccctgccagatcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87602798 106 - 96509753 agggggtt---------ttgcccaggctgttctcgaattcaagccttgatctgcccacctgagcctcccaaaatgctgggatt-------ataggcatgagccaccacgccctgccagatcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7094511 106 - 13098629 agggggtt---------ttgcccaggctgttctcgaattcaagccttgatctgcccacctgagcctcccaaaatgctgggatt-------ataggcatgagccaccacgccctgccagatcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4061039 106 - 4483953 agggggtt---------ttgcccaggctgttctcgaattcaagccttgatctgcccacctgagcctcccaaaatgctgggatt-------ataggcatgagccaccacgccctgccagatcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24691810 113 + 33263144 atggggttttgcc-acgttgcccaggctgttctcgaattcaagccttgatctgcccccctgagcctcccaaaatgctgggatt-------ataggcatgagcc-ccacgccctgccagatcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13965995 106 - 14338769 agggggtt---------ttgcccaggctgttctcgaattcaagccttgatctgcccacctgagcctcccaaaatgctgggatt-------ataggcatgagccaccacgccctgccagatcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 909305 114 + 1946073 atggggtttcgcc-atgttgcccaggctgttctcgaactcaagccttgatctgcccacctgagcctcccaaaatgctgggatt-------ataggcatgagccaccacgccctgccAgatcc i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8853508 111 - 16357246 ctggggttttgcc-ttgttgcccaagctgttctcgaactcaagt---gattcccccacctcagcctcctcaaatgctgggatt-------ataggcatgagccacaacgccctgccagatcc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1336242 112 - 1807191 ttggggttttgccaatgttgcccaggctgttctcgaactcaagc---gatttgcccacctcagcctcctcagatgctgggatt-------gtaggcatgagccaccacgccctgccagatcc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 14771 118 + 5963231 ttggggttttgcc-atgttgcccaggctgttcttgaactcaagc---gattcgcccacctcagcctcctcaaatgctgggattgtaggtagtaggcatgagccaccacgccctgccagatcc i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46079710 20 - 69331447 --------------------------------------------------------------------------------atg-------gggggtgcgcgccacta--------------- i canFam3.chr10 C 0 C 0 e mm10.chr15 82807257 78 + 104043685 I e dasNov3.JH570235 51915 153 + 1056298 I e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=147848.000000 s hg38.chr22_GL383582v2_alt 69092 19 + 162811 aggtctttatacatttgtc s panTro5.chr22 28849451 19 + 37823149 aggtctttatacatttgtc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41123776 19 + 50109623 aggtctttatacatttgtc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3146051 19 + 4464012 aggtctttatacatttgtc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106642692 19 - 115148730 aggtctttattcatttgtc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84257899 19 + 92844088 aggtcttcacacacttgtc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87602904 19 - 96509753 aggtcttcacacacttgtc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7094617 19 - 13098629 aggtcttcacacacttgtc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4061145 19 - 4483953 aggtcttcacacatttgtc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24691923 17 + 33263144 gggtcttcacacg--tgtc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13966101 19 - 14338769 aggtcttcacacatttgtc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 909419 19 + 1946073 aggtcttcatacatttgtc i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8853619 19 - 16357246 aggtctttatacgtttgtc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1336354 19 - 1807191 aggtctttatacatttgtc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 14889 19 + 5963231 aggtctttatacatttgtc i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82807335 19 + 104043685 aagtttgtgtaaatctatg i mm10.chr15 I 78 C 0 s canFam3.chr10 46079730 3 - 69331447 --gtc-------------- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 51915 153 + 1056298 I e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I e calJac3.chrUn_GL286373 1937024 1864 - 2117846 I a score=1765190.000000 s hg38.chr22_GL383582v2_alt 69111 185 + 162811 aaaggccataaaatgtacaccaccgggagtggcccctagtataaactatggactt--tgg-gtgaaaacagtatgcc---------------------aactctggttgg-gatgttgataga-gggaaaggtatgcatacg-gggg-gaaggggttatatgggaactgtctgtaccgtcagcttaatccttctgtgaacataaaactactt-t s panTro5.chr22 28849470 185 + 37823149 aaaggccataaaatgtacaccaccgggagtggcccctagtataaactatggactt--tgg-gtgaaaacagtatgcc---------------------aactctggttgg-gatgttgataga-gggaaaggtatgcatacg-gggg-gaaggggttatatgggaactgtctgtaccgtcagcttaatcctgctgtgaacataaaactactt-t i panTro5.chr22 C 0 C 0 s panPan2.chr22 41123795 185 + 50109623 aaaggccataaaatgtacaccaccgggagtggcccctagtataaactatggactt--tgg-gtgaaaacagtatgcc---------------------aactctggttgg-gatgttgataga-gggaaaggtatgcatacg-gggg-gaaggggttatatgggaactgtctgtaccgtcagcttaatcctgctgtgaacataaaactactt-t i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3146070 185 + 4464012 aaaggtcataaaatgtacaccaccgggagtggcccctagaataaactatggactt--tgg-gtgaaaacagtgtgcc---------------------aactctggttgg-gatgttgataca-gtgaaaggtatgcatacg-gggg-gaaggggttatatgggaactgtctgtaccgtcagcttaatcctgctgtgaacataaaactactt-t i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106642711 184 - 115148730 aaaggccataaaatgtacaccaccgggagtggctcctagtataaactatggactt--cgg-gtgaaaacagtgtgcc----------------------actctggttgg-gatgttgataga-ggggaaggtatgcataca-gggg-gaaggggttatatgggaactctctgtaccgtcagcctaatcctgctgtgaacataaaactactt-t i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84257918 206 + 92844088 aaaagccataaaatgtacaccaccaggagtggcccctagtataaactatggactt--tgg-gtgataacaatgtatccatcagttgtaacaaatgtgccactctggatgg-gatgttgataga-ggggaaggtatgcatatg-gggg-taaggggttatataggaactctctgtaccttcagcttaatcctgctgtgaacataaaactgctt-t i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87602923 206 - 96509753 aaaagccataaaatgtacaccaccaggagtggcccctagtataaactatggactt--tgg-gtgataacaatgtatccatcagttgtaacaaatgtgccactctggatgg-gatgttgataga-ggggaaggtatgcatatg-gggg-taaggggttatataggaactctctgtaccttcagcttaatcctgctgtgaacataaaactgctt-t i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7094636 206 - 13098629 aaaagccataaaatgtacaccaccaggagtggcccctagtataaactatggactt--tgg-gtgataacaacgtatccatcagttgtaacaaatgtgccactctggatgg-gatgttgataga-ggggaaggtatgcatatg-gggg-taaggggttatataggaactctctgaaccttcagcttaatcctgctgtgaacataaaactgctt-t i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4061164 206 - 4483953 aaaagtcataaaatgtacaccaccaggagtggcccctagtataaactatggactt--tgg-gtgataacaatgtatccatcagttgtaacaaacgtgccactctggatgg-gatgttgataga-gggaaaggtatgcatata-gggg-taaggggttatataggaactctctgtaccttcagcttaatcctgctgtgaacataaaactgctt-t i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24691940 204 + 33263144 aaaagccataaaatgt---ccaccaggagtggcccctagtatgaactatggactt--tgg-gtgataacaatgtatccatcagttgtaacaaatgtgccactctggctgg-gatgttgataga-ggggaaggtatgcatagg-ggggataaggggttatatgggaactctctgtgccttcagcttaatcctgctgtgaacataaaactgttt-t i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13966120 206 - 14338769 aaaagccataaaatgtacaccaccaggagtggcccctagtataaactatggactt--tgg-gtgataacaatgtatccatcaggtgtaacaaacgtgccactctggatgg-gatgttgataga-ggggaaggtatgcatata-gggg-taaggggttatataggaactctctgtaccttcagcttaatcctgctgtgaacataaaactgctt-t i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 909438 203 + 1946073 aaaagccataaaatgtacaccaccaggagtggcccctagtataaactatggactt--tgg-gtggtaacaatgtatccatcagttttaacaaacgtgccactctggatgg-gatgttgataga-ggggaaggtatgcatatg-gggggtaaggggttatatgggaactct----accttcagcttaatcctgctgtgaacataaaactgctt-t i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1938888 204 - 2117846 aaaaGccataaaatgaccaccaccaagagtggcccctagtagaaacgatggactt--cgg-gtgatcacaatgtatc----agttgtaacaaacatgccactctggttgg-gatgtggacagagggggaagctatgcatatgtgggg-gaaggggttatatgggaactctctgtaccttcagcttaatcctgctgtgattataaagctgctt-a i calJac3.chrUn_GL286373 I 1864 C 0 s saiBol1.JH378157 8853638 204 - 16357246 aaaagccataaaatgtccaccaccaggagtggctcctagtataaacgatggactt--tgg-gtgataacaatttatc----agttctaacaaacatgccactctggttgg-gatgtggacagagggggaagctatgcatgtgtcggg-gaaggggttatatgggaactttctgtaccttcagcttaatcctgctgtgattataaagctgctt-a i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1336373 202 - 1807191 aaaagccataaaatgtgcaccaccaggagtggcccctagtataaacgatggactt--tgg-gtgataacaa--tatc----agttggaacaaacatgccactctggttgg-gatgtggacagagggggaagctatgcgtatgtgggg-gaaggggttatgtgggaactctgtgtaccttcagcttaatcctgctgtgattataaagctgctt-a i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 14908 203 + 5963231 aaaagccataaaatgtccaccaccaggagtgacccctagtataaacgatggactt--tgg-gtgataacaatatatc----agttttaacaaacatgccactctggttgg-gatgtggacagagggggaagctatgcatatgtgggg-gaaggggttatatgggaactctc--taccttcagcttaatcctgctgtgattataaagctgcttaa i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82807354 191 + 104043685 ---aagtatccagtacacagcataaggagcaaaccttgacataaatcacagacgtaagag-gcaattatgaagtatc--------acaacacatgtgctactccagagggccacacccaca-a-tgagatgagctgc-caca-ggag-gatgcaggtccataggagct-----tatcttctgtccaaagctaccatgaacctaaaactgctt-t i mm10.chr15 C 0 C 0 s canFam3.chr10 46079733 180 - 69331447 cgaacccacagaacgtgtaacaccaaggatgatccctaatgctgactatggGTGT--CAGTGCAGTAGGATTGCGGG---------------------------GGTGGG-GGCGCGGTAACT-AGGGGTGGGTGGCGGCGG-ggga-gcaggggctactggggagggttctgggacttgtgctcaacacggctgtgaacttcagattgctc-t i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 51915 153 + 1056298 I e otoGar3.GL873526 36279404 2082 - 42659167 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I a score=285874.000000 s hg38.chr22_GL383582v2_alt 69296 33 + 162811 aaaaaaatcaattaagaCAAAC-----------------ACTAA----AGGAAC s panTro5.chr22 28849655 33 + 37823149 aaaaaaATCAATTAAGACAAAC-----------------ACTAA----AGGAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41123980 33 + 50109623 aaaaaaATCAATTAAGACAAAC-----------------ACTAA----AGGAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3146255 33 + 4464012 aaaaaaATCAATTAAGACAAAC-----------------ACTAA----AGGAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106642895 33 - 115148730 aaaaaaATCAATTAAGACAAAC-----------------ACTAA----AGGAAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84258124 29 + 92844088 aacaaaatcaaTTA----AAAC-----------------ACTGA----AGGAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603129 29 - 96509753 aacaaaatcaaTTA----AAAC-----------------ACTGA----AGGAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7094842 29 - 13098629 aacaaaatcaaTTA----AAAC-----------------ACTGA----AGGAAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4061370 29 - 4483953 aacaaaatcaaTCA----AAAC-----------------ACTGA----AGGAAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692144 29 + 33263144 aacaaaatcaaTTA----AAAC-----------------ACTGA----AGGAAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13966326 29 - 14338769 aacaaaatcaaTTA----AAAC-----------------ACTGA----AGGAAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 909641 33 + 1946073 aacaaaatcaaTTAAGACAAAC-----------------ACTGA----AGGAAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939092 33 - 2117846 aaaaaaACTGATTAAGACAAGC-----------------ACTGA----AGGAAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8853842 33 - 16357246 aaaaaaACTGATTAAGACAAAC-----------------ACTGA----AGGAAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1336575 33 - 1807191 aaaaaaACTGATTAAGACAAAC-----------------ACTGA----AGGAAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 15111 33 + 5963231 aaaaaaaaTGATTAAGACAAAC-----------------ACTGA----AGGAAC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36281486 36 - 42659167 GACAAAATT-ATCAAAACGAAC-----------------GCTGAACTCATAAGC i otoGar3.GL873526 I 2082 C 0 s mm10.chr15 82807545 50 + 104043685 cacaaaACCTATTACAACACACATGCACTGACCTTATAAACTGC----AGGAAC i mm10.chr15 C 0 C 0 s canFam3.chr10 46079913 31 - 69331447 taaaaaGCCAATGGGGAAAAAT-----------------ACAGA------GAGC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 51915 153 + 1056298 I e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I a score=625074.000000 s hg38.chr22_GL383582v2_alt 69329 72 + 162811 TAAAAGGCACTTGAG-CAGTTGAGGA-GAACTGCAGAAGCCAG-AAACTGGAGTCAGGAGGCATGCGTGTATCAC s panTro5.chr22 28849688 72 + 37823149 TAAAAGGCACTTGAG-CAGTTGAGGC-GAACTGCAGAAGCCAG-AAACTGGAGTCAGGAGGCATGCGTGTATCAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124013 72 + 50109623 TAAAAGGCACTTGAG-CAGTTGAGGC-GAACTGCAGAAGCCAG-AAACTGGAGTCAGGAGGCATGCGTGTATCAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3146288 70 + 4464012 TAAAAGGCACTTGAG-CAGTTGAGGC-GAACTGCAGAAGCCAG-AAACTG--GTCAGGAGGCATGCGTGTATCAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106642928 72 - 115148730 TAAAAGGCACTTGAG-CAGTTGAGGC-GAACTACAGAAGCCAG-AAACTGGAGTCGGGAGGCATGCGTGTATCAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84258153 70 + 92844088 TAAAAGGCACTTGAG-CAGTTGAGGC-GAACTGCAGAAGGCAG-AAGC--GAGTCAGGAGGCATGTGCATATCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603158 70 - 96509753 TAAAAGGCACTTGAG-CAGTTGAGGC-GAACTGCAGAAGGCAG-AAGC--GAGTCAGGAGGCATGTGCATATCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7094871 70 - 13098629 TAAAAGGCACTTGAG-CAGTTGAGGC-GAACTGCAGAAGGCAG-AAGC--GAGTCAGGAGGCATGTGCATATCAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4061399 70 - 4483953 TAAAAGGCACTTGAG-CAGTTGAGGC-GAACTGCAGAAGGCAG-AAGC--GAGTCAGGAGGCATGTGCGTATCAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692173 70 + 33263144 GAAAAGGCACTTGAG-CAGTTGAGGC-GAACTGCAGAAGGCAG-AAGC--GAGTCAGGAGGCATGTGCGTATCAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13966355 69 - 14338769 TAAAAGGCACTT-AG-CAGTTGAGGC-GAACTGCAGAAGGCAG-AAGC--GAGTCAGGAGGCATGTGCGTATCAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 909674 70 + 1946073 TAAAAGGCACTTGAG-CAGTTGAGGC-GAACTGCAGAAGGCAG-AAAC--GAGTCAGGAGGCATGCGCGTATCAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939125 72 - 2117846 TAAAGGGCATGTGAG-CAGTTGAGAC-TCAATGCAGAAGCCAG-AAGCTGGAGATGGGAGGCATGTGCATAACCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8853875 72 - 16357246 TAAAGGGCATTTGAG-CAGTTGAGAC-TCAATGTAGAAGCCAG-AAGCTGGAGATGGGAGGCATGTGCATAGCCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1336608 72 - 1807191 TAAAGGGCATTTGAG-CAGTTGAGAC-TCAATGCAGAAGCCAG-AAGCTGGAGATGGGAGGCATGTGCATAACCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 15144 72 + 5963231 TAAAGGGCATTTGAG-CAGTTGAGAC-TCAATGCAGAAGCCAG-AAGCTGGAGATGGGAGGCATGTGCATAATCT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36281522 67 - 42659167 TGCGGTACAT---AG-CAGCGGAGGC-TTACTGCAGAAGCCAGAAAGCGGGAGTTGGGAGGCAAGGGTTAAT--- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82807595 65 + 104043685 TGAAAGGCA---GAGACAGCCACGGC---ACTGCCCAAGTCAGGAAACTGCCATCAAGAGGAAC-TGAATAG--- i mm10.chr15 C 0 C 0 s canFam3.chr10 46079944 58 - 69331447 TTAA--------GAG-CTGTGGGAGCTGAAATGCAG----TCG-AGGCAGGAGACAGGAGG---GGGAGTGGCCA i canFam3.chr10 C 0 I 4 s dasNov3.JH570235 52068 62 + 1056298 TGGAATGCACAGGAG-CAGTTG---T-TTACTGCAG--------AAGTTGAAGCTGGGAGGGAGATGTGGGACAC i dasNov3.JH570235 I 153 C 0 e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I e micMur3.chr7 5703641 2752 + 108171978 I a score=173364.000000 s hg38.chr22_GL383582v2_alt 69401 15 + 162811 TGCCACTCCCCAGTG s panTro5.chr22 28849760 15 + 37823149 TGCCACTCCCCAGTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124085 15 + 50109623 TGCCACTCCCCAGTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3146358 15 + 4464012 TGCCACTCCCCAGTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106643000 15 - 115148730 TGCCACTCCCCAGTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84258223 15 + 92844088 TGCCACTCCCCAGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603228 15 - 96509753 TGCCACTCCCCAGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7094941 15 - 13098629 TGCCACTCCCCAGTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4061469 15 - 4483953 TGCCACTCCCCAGTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692243 15 + 33263144 TGCCACTCCCCAGTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13966424 15 - 14338769 TGCCACTCCCCAGTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 909744 15 + 1946073 TGCCACTCCCCAGTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939197 15 - 2117846 TGCCACTCCCCAGGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8853947 15 - 16357246 TGCCACTCCCCAGGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1336680 15 - 1807191 TGCCACTCCCCAGGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 15216 15 + 5963231 TGCCACTCCCCAGGC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5706393 15 + 108171978 TGCCACTCCCCAGTT i micMur3.chr7 I 2752 I 1 s mm10.chr15 82807660 15 + 104043685 GGTCACTGCCCACTC i mm10.chr15 C 0 C 0 s canFam3.chr10 46080006 5 - 69331447 CGCCA---------- i canFam3.chr10 I 4 C 0 e dasNov3.JH570235 52130 0 + 1056298 C e otoGar3.GL873526 36281589 0 - 42659167 C e proCoq1.NW_012136747v1 5066971 2759 - 6317780 I a score=3597857.000000 s hg38.chr22_GL383582v2_alt 69416 270 + 162811 A-AGGTCATTACTGAAGCCAATTTAAGGAAAGACCTAGAACAATCACAAGTGCTCC--ACTCAG---------GCAAATCAAAA-GGGGACAAAAGAATAAAAGACAAAATGAC----AAACATTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATACATATTTTTCAAGTTTTGTGGTTTAGCCCTTGACACCTGAAGTCTATCCATTTCATTTTAACTGTATTAATGCCAAGTCAAG--ACCAGAATGAGACAACAACTAGCTCAAAAAAG--CCATCATTTCTGTGCAGG s panTro5.chr22 28849775 252 + 37823149 A-AGGTCATTACTGAAGCCAATTTAAGGAAAGACCTAGAACAATCACAAGTGCTCC--ACTCAA---------GCAAATCAAAA-GGGGACGAAAGAATAAAAGACAAAATGAC----AAACATTTGCTGTCAGGAAAA-----TATTTTCC--------------------AAGTTTTGTGGTTTAGCCCTTGACACCTGAAGTCTATCCATTTCATTTTAACTGTATTAATGCCAAGTCAAG--ACCAGAATGAGACAACAACTAGCTCAAAAAAG--CCATCATTTCTATGCAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124100 252 + 50109623 A-AGGTCATTACTGAAGCCAATTTAAGGAAAGACCTAGAACAATCACAAGTGCTCC--ACTCAA---------GCAAATCAAAA-GGGGACGAAAGAATAAAAGAAAAAATGAC----AAACATTTGCTGTCAGGAAAA-----TATTTTCC--------------------AAGTTTTGTGGTTTAGCCCTTGACACCTGAAGTCTATCCATTTCATTTTAACTGTATTAATGCCAAGTCAAG--ACCAGAATGAGACAACAACTAGCTCAAAAAAG--CCATCATTTCTATGCAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3146373 268 + 4464012 A-AGGTCATTACTGAAGCCAA-TTAAGGAAAGACCTAGAACAATCACAAGTGCTCC--ACTCAA---------GCAAATCAAAA-GGGGACAAAAGAATAAAAGACAAAATGAC----AAACATTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATACTATTTTTC-AAGTTTTGTGGTTTAGCCCTTGACACCTGAAGTCTATCCAGTTCATTTTAACTGTATTAATGCCAAGTCAAG--ACCAGAATGAGACAACAACTAGCTCAAAAAAG--CCATCATTTCTATGCAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106643015 272 - 115148730 A-AGGTCATTTCTGAAGCCAATTTAAGGAAAGACCTACAACAATCACAAGTGCTCC--ACTCAA---------GCAAATCAAAA-GGGGACAAAAGAATAAAAGACAAAATGAC----AAACATTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATACATATTTTTCAAGTTTTGTGGTTTAGCCCTTGACACCTGAAGTCTATCCATTTCATTTTAACTGTATTAATGCCAAGTCAAG--ACCAGAATGAGACAACAACTAGCTCAAAAAAAGCCCTTCATTTCTATGCAGG i nomLeu3.chr7b C 0 M 100 s rheMac8.chr10 84258238 259 + 92844088 A-AGGTCATTTCTGAAGTCAATTTAAGGAAAGACCTAGAACAATCGCAAGTACTCC--ACTCAA---------GCCAATCAAAA-GGGGACAAAACAATAAAAGGCAAAATGAC----AAACATTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATATGTATTTTTCAAGTTTTGTGGTTTAGCCCTTGACACCTGAAATCTA------TCATTTTAACTGTATTAATGC-----CAAG--ACCAGAAGGAGAATGCAACTAGCTCAAAAAAG--CCATCATTTCTATGCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603243 259 - 96509753 A-AGGTCATTTCTGAAGTCAATTTAAGGAAAGACCTAGAACAATCGCAAGTACTCC--ACTCAA---------GCCAATCAAAA-GGGGACAAAACAATAAAAGGCAAAATGAC----AAACATTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATACGTATTTTTCAAGTTTTGTGGTTTAGCCCTTGACACCTGAAATCTA------TCATTTTAACTGTATTAATGC-----CAAG--ACCAGAATGAGAATGCAACTAGCTCAAAAAAG--CCATCATTTCTATGCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7094956 259 - 13098629 A-AGGTCATTTCTGAAGTCAATTTAAGGAAAGACCTAGAACAATCGCAAGTACTCC--ACTCAA---------GCCAATCAAAA-GGGGACAAAACAATAAAAGGCAAAATGAC----AAACATTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATACGTATTTTTCAAGTTTTGTGGTTTAGCCCTTGACACCTGAAATCTA------TCATTTTAACTGTATTAATGC-----CAAG--ACCAGAATGAGAATGCAACTAGCTCAAAAAAG--CCATCATTTCTATGCAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4061484 259 - 4483953 A-AGGTCATTTCTGAAGTCAATTTAAGGAAAGACCTAGAACAATCGCAAGTACTCC--ACTCAA---------GCCAATCAAAA-GGGGACAAAACAATAAAAGGCAAAATGAC----AAACATTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATACGTATTTTTCAAGTTTTGTGGTTTAGCCCTTGACACCTGAAATCTA------TCATTTTAACTGTATTAATGC-----CAAG--ACCAGAATGAGAATGCAACTAGCTCAAAAAAG--CCATCATTTCTATGCAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692258 259 + 33263144 A-AGGTCATTTCTGAAGTCAATTTAAGGAAAGACCTAGAACAATTCCAAGTACTCC--ACTCAA---------GCCAATCAAAA-GGGGACAAAACAATAAAAGGCAAAATGAC----AAACATTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATACGTATTTTTCAAGTTTTGTGGTTTAGCCCTTGACACCTGAAATCTA------TCATTTTAACTGTATTAATGC-----CAAG--ACCAGAATGAGAATGCAACTAGCTCAAAAAAG--CCATCATTTCTATGCAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13966439 259 - 14338769 A-AGGTCATTTCTGAAGTCAATTTAAGGAAAGACCTAGAACAATCGCAAGTACTCC--ACTCAA---------GCCAATCAAAA-GGGGACAAAACAATAAAAGGCAAAATGAC----AAACATTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATACGTATTTTTCAAGTTTTGTGGTTTAGCCCTTGACACCTGAAATCTA------TCATTTTAACTGTATTAATGC-----CAAG--ACCAGAATGAGAATGCAACTAGCTCAAAAAAG--CCATCATTTCTATGCAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 909759 259 + 1946073 A-AGGTCATTTCTGAAGTCAATTTAAGGAAAGACCTAGAACAATCGCAAGTACTCC--ACTCAA---------GCCAGTCAAAA-GGGGACAAAAGAATAAAAGGCAAAATGAC----AAACGTTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATACATATTTTTCAAGTTTTGTGGTTTAGCCCTTGACACCTGAAATCTATCCATTTCATTTCAACTGTATTAACGC-----CAAG--ACC------AGAATGCAACTAGCTCAAAAAAG--CCATCATTTCTATGCAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939212 256 - 2117846 ATAGGTCATTTCTGAAGCCAATT-------AGACGTAGAACAATCACAAGTGCTCC--ACTCAA-----ATCAGCAAATCAAAA-GGGGACAAAAGAATAAAAGGCAAAGCAAAGAAGAAACGTTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATAC-TATTTTTCAAG-TTTGTGGTTTAGCCCTTGACACCTGAAATCTATCAATTTCATTTAAACTGTGTTAATGCCAAGTCAAG--ATCAGAATGA--------------GAAAAAAG--CCATCATTTCTATGCAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8853962 272 - 16357246 ATAGGTCATTTCTGAAGCCGATT-------AGACACAGAACAATCACCAGTGCTCC--ACTAAA-----ATCGGCAATTCAAAA-GGGGACAAAAGAATAAAAGGCAAAGTGATGAAGAAACATTTGCTGTCAGGAAAA-----TATTTTCCTCAAGATATAC-TATTTTTCACG-TTTGTGGTTTAGCCCTTGACACCTGAAATCTATCAATTTCATTTAAACTGTGTTAATGCCAAGTCAAG--ACCAGAATGAGAAAGCAACTAGCTGAAAAAAG--TCATCATTTCTATTCAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1336695 270 - 1807191 ATAGGTCATTTCTGAAGCCAATT-------AGACGCACAACAATCACAAGTGCTCC--ACTCAA-----ATCAGCAAATCAAAA-GGGGACAAAAGAATAAAAGGCAAAGCGATGAAGAAACATTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATAC-TATTTTTCAAG-TTTGTGGTTTAGCCCTTGACACCTGAAATTTATCAATTTCATTTAAACTGTGTTAATGCCAAGTCAAG--ACCAGAATGAGAAAGCAACTAGCTGAAAAAAG--TCATCATTTCTATGCAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 15231 270 + 5963231 ATAGGTCATTTCTGAAGCCAGTT-------AGACATAGAACGATCAGAAGTGCTCC--ACTCAA-----ATCAGCAAATCAAAA-GGGGACAAAAGAATAAAAGGCAAAGAGAGGAAGAAACATTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATAC-TATTTTTCAAG-TTTGTGGTTTAGCCCTTGACACCTGAAATCTATCAATTTCATTTAAACTGTGTTAATGCCAAGTCAAG--ACCAGAATGAGAAAGCAACTAGCTGAAAAAAG--CCATCATTTCTATGCAGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5706409 283 + 108171978 A-AGGTCATTTCTGAAGCCAGTTTAAGGAAAGACCTAGAACAAACACAAATGCCCCTGACTCAAGGATCATTAGCAAATCAAAA-GGGGACAAAAGAATAAAAGAC-AAATGATGAAGCAATATTTGCTGTCAGGAAAATATCATATTTTCCTCAAG--ATACATATTTTTTAAGTTTCGTGGTTTACCTCTTGACACTTGAA----ATCAATTTCATTTTAACTGTGTTGATGCCAAGCAAAG--ACCAGAACGGGAAGCCAACCAGCTCAG--AAG--CCCTTATTTCTATGCAGG i micMur3.chr7 I 1 C 0 s proCoq1.NW_012136747v1 5069730 289 - 6317780 A-AGGTCATTTCTGAAGCCAGTTTAAGGAAAGACCTAGAACAAACACAAATGCCCCTGGCTCAAGTATCATCAGCAAATCAAAA-GGGGACAAAAGAATAAAAGGCAAAATGACAAAGCAGTATCTGCTGTCAGGAAAACATTGTATTTTCCTCAAG--ATACATATTTTTCAAGTTTTGTGGTTTAGCTCTTGACACCCGAAATCTATCAATTTCATTTTAACTGCATCGATGCCAAGCAAAG--ACCAGAACAGGAAGCCAACCAGCTCAG-AAAG--CCCTCATTTCTATGCAGG i proCoq1.NW_012136747v1 I 2759 C 0 s otoGar3.GL873526 36281589 276 - 42659167 G-AGGTCATTTCTGAAGCCAGTTTAAGCAAAGACCTAG--CAATCAC-AACGTCCCTGGCTCAAGCATCATCACCAAGTCAA----GGGACAAAAGAATGAAAGACAAAGTGAGGAAGCAACATTTGCTGTCAAGGAGA---AGTATTTTCCTCAAG--ACACAGATTTTTTAAGTTTCGTGGTTTAGCTCTTGACATGTGAAATCTATTACTTTCAGTTAAACTTTG--AATGCCATGTCAAG--AGCAGAATAGGAAGCCAACCAGCTCCA-AAAG--CCCT--TTTCTCCGCAGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82807675 250 + 104043685 --AAGTCATTTCTGAATCTCAT------------------CAAT----AAAGCTGT--GCTCAGGTCCCACCAGCAAATGGAAT-GGGAACAAAAGAACAAAAGGGAAAGTGAC----GAACATCGGCTGTCAGGAAAA-----TATTTTCCTCAAG--ACACCCATTCTTCAAGTTTTATGGCTTAGTCCATGACACCTGAAATCTATCAATTTCATTTTAACCGTGTTAATCC------AGGTTACCAACAAGAGACGCTAACCAGTTCAA--AAG--CCATCATTTCTATTCAGG i mm10.chr15 C 0 C 0 s canFam3.chr10 46080011 238 - 69331447 A-TGGTCATTTCGG--------------------------------------------AATCAAGGATCATCAGCAAGTCAGAA-GGGGACAGAAGAAGGCAAG-CAGGATGACAAAGAATCATTTGCTGTCAGGAAAA-----TATTTTCCTCAAG--ATACATATTTTTCAAGTTTTGTGGTTTAGCCCCTGACACCTGAAATCTATCAATTTCACTTGAACTGTGTTAATGCCAAGTCAAG--AGCAG-ACGGAAAGCCACACAGCTCAA-AAAG--CCGGCATTGCTATGCAGG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 52130 263 + 1056298 --------------AAGCCCCTGCCCGGAGAGACCTAGAATGATTGCAAGGGCCCA--GCTCGG---GCATTGGCAGGTCAAAGTGGGGAAAAAAGAATAAAACGCAAAATGACCAAGAAACATTTGCTGTCAGGAAAA-----TATTTTCCTCAAA--ACAC--ATTTTTCAAGTCATGAGGTTTAGCTC--AACACTTGAATTCTATTGATTTCATTTTAACTGTGTTAATGCCAAGTCAGG--ATGGAAACTGGAACCCAAGCAGCTCAA-AAAG--ACTTCATTTCTATGCACG i dasNov3.JH570235 C 0 C 0 a score=3427191.000000 s hg38.chr22_GL383582v2_alt 69686 239 + 162811 TCCTGTTCAGTTGCCTAAGCTTGGTCCTACGGCCGGCACGGCGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGGAC-----TGCTTGATGTAGCCATTAAAATACAATTAATCTGCCATTTCTGCTG-CCCCAAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTGCTTCACAATATTCCTTCCAGTATTTCCATTCT------CTAAA--AAAGTCCATTAACATTCCATT s panTro5.chr22 28850027 239 + 37823149 TCCTGTTCAGTTGCCTAAGCTTGGTCCTACGGCCGGCACGGCGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGGAC-----TGCTTGATGTAGCCATTAAAATACAATTAATCTGCCATTTCTGCTG-CCCCAAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTGCTTCACAATATTCCTTCCAGTATTTCTATTCT------CTAAA--AAAGTCCATTAACATTCCATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124352 239 + 50109623 TCCTGATCAGTTGCCTAAGCTTGGTCCTACGGCCGGCACGGCGCACCCACCCACACCT-----CCACCCTGGCGGAGTGAAATGAGAAATGGAC-----TGCTTGATGTAGCCATTAAAATACAATTAATCTGCCATTTCTGCTG-CCCCAAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTGCTTCACAATATTCCTTCCAGTATTTCTATTCT------CTAAA--AAAGTCCATTAACATTCCATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3146641 238 + 4464012 TCCTGTTCAGTTGCCTAAGCTTGGTCCCACGGCCGGCACGGCGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGGAC-----TGCTTGATGTAGCCATTAAAACACAATTAATCTGCCATTTCTGCTG-CCCCAAATTGATGAACAC---AG-ACTCATTTATAATTGCTTATTTCTGCTTCACAATATTCCTTCCAGTATTTCTATTCT------CTAAA--AAAGTCCATTAACATTCCATT i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84258497 239 + 92844088 TCCTGTTCAGTTGCCCAAGCTTGGTCCTATGGCCGACACAATGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGGAC-----TGCTTCATGTAGCGATTAAAACACCATTAATCTGCCATTTCTGCTG-CCCTAAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTACTCT------CTAAA--AAAGTCCATTAACATTCCATT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603502 239 - 96509753 TCCTGTTCAGTTGCCCAAGCTTGGTCCTATGGCCGACACAATGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGGAC-----TGCTTCATGTAGCGATTAAAACACCATTAATCTGCCATTTCTGCTG-CCCTAAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTACTCT------CTAAA--AAAGTCCATTAACATTCCATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7095215 239 - 13098629 TCCTGTTCAGTTGCCCAAGCTTGGTCCTATGGCCGACACAATGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGGAC-----TGCTTCATGTAGCGATTAAAACACCATTAATCTGCCATTTCTGCTG-CCCTAAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTACTCT------CTAAA--AAAGTCCATTAACATTCCATT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4061743 239 - 4483953 TCCTGTTCAGTTGCCCAAGTTTGGTCCTATGGCCGACACAACGCACCCACCCGCACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGGAC-----TGCTTCATGTAGCGATTAAAACACCATTAATCTGCCATTTCTGCTG-CCCTAAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTACTCT------CTAAA--AAAGTCCATTAACATTCCATT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692517 239 + 33263144 TCCTGTTCAGTTGCCCAAGCTTGGTCCTACGGCCAACACAACGTACCCACCCACACCT-----CCATCCTGGCAGAGTGAAATGAGAAATGGAC-----TGCTTCATGTAGCGATTAAAACACCATTAATCTGCCATTTCTGCTG-CCCTAAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTACTCT------CTAAA--AAAGTCCATTAACATTCCATT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13966698 239 - 14338769 TCCTGTTCAGTTGCCCAAGCTTGGTCCTATGGCCGACACAACGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGGAC-----TGCTTCATGTAGCGATTAAAACACCATTAATCTGCCATTTCTGCTG-CCCTAAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTACTTTACAACATTCCTTCCAGTATTTCTACTCT------CTAAA--AAAGTCCATTAACATTCCATT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 910018 239 + 1946073 TCCTGTTCAGCTGCCCAAGCTTGGTCCTATGGCCGACACAATGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGGAC-----TGCTTCATGTAGCCATTAAAACACAATTAATCTGCCATTTCTGCTG-CCCTAAATTGATGAACAC---AGAACTCATGTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTACTCT------CTAAA--AAAGTCCATTAACATTCCATT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939468 237 - 2117846 TCCTGCTCAGCTGCCCAAGTGTCGTCCCACGGCCGACACAGTGCGCCCACTCACACCT-----CCATCCTGGTAGAGTGAAATGAGAAATGGAC-----TGCTTGATGTAGCCATTAAAACAAAATT-ATCTGCCATTTCTGCTGCCCCAAAATTGATGAACAC---AGAACTCATTTATAATCGCTTATTTCTACTTCATAACATTCCTTCCAGCATTTCTATTCT------CT--A--AAAGTCGATTAACATTGCATT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8854234 239 - 16357246 TCCTGCTCAGCTGCCCAAGCGTAGTCCCACGGCCGACACAGTGTGCCCACTCACACCT-----CCATCCTGGCGGCGTGAAATGAGAAATGGAC-----TGCTTGATGCAGCCATTAAAATGAAATT-ATCTGCCATTTCTGCTGCCCCAAAATTGATGAACAC---AGAACTCATTTATAATCGCTTATTTCTACTTCACAACATTCCTTCTAGCATTTCTATTAT------CTAAA--AAAGTCCATTAACATTGCATT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1336965 241 - 1807191 TCCTGCTCAGCCGCTCAAGCGTAGTCCCACGGCCGACACAGTGCGCCCACTCACACCT-----CCATCCTGGCAGAGTGAAATGAGAAATGGAC-----TGCTTGATGTAGCCATTAAAACGAAATT-ATCTGCCATTTCTGCTGCCCCAAAATTGATGAACAC---AGAACTCATTTATAATCGCTTATTTCTACTTCACAACATTCCTTCCAGCATTTCTATTCT------CTAAAATAAGGTCCATTAACATTGCATT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 15501 238 + 5963231 TCCTGCTCAGCTGCCCAAGCATAGTCCCATGGCCGACACAGTGCGCCCACTCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGCAC-----TGCTTGATGTAGTCATTAAAACGAAATT-ATCTGCCATTTCTGCTG-CCCAAAATTGATGAACAC---AGAACTCATTTATAATCGCTTATTTCTACTTCACAACATTCCTTCCAGCATTTCTATTCT------CTAAA--AAAGTCCATTAACATTGCATT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5706692 246 + 108171978 -TCTGTTCAGCTGCCTGAGCGTGGTGCCATGGCCAACACAGTGCACCCACCCACACCT-----CCATCCTGGCAAAGCGAAATGAAAAATGGACCACACTACTTGATGCAGCCATTAAAATGAAATTAATCTGCCATTTCTGCAG-CCCCAAATTGATGAGCACATGAGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTTCTTTCAGTATTACTGCCCT------CTAAA--AAAGCCCATTAACATTGCATT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5070019 246 - 6317780 -TCTGTTCAGCTGCCTGAGCATGGTCCCATGGCCAACACAGTGCACCTGCCCACACCT-----CCATCCTGGCAAAGCGAAATGAGAAATGGACCGCAATACTTGATGCAGCCATTAAAATGAAATTAATCTAACATTTCTGCAG-CCCCAAATTGATGAGCACATGAGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTGCCCT------CTAAA--AAAGCCCATTAACATTCCATt i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36281865 226 - 42659167 -TC-----------------------CTACGGCCA--GCAGCATGCTCACCCACACCT------CATCCTGGCACAGCGTAGAGAGAGACGGATGGCAATACTTGCTGCAGCCATTAAAGTGAAATTAATCTGCCATCTCGGCAG-CCCCAGACTGATGATCACACAAAAATTCATTTATAATTGCTTACTTCTACTTCACAACATTCCTTCCAGTGTTTCTGTCCTCTGAAGCTAAA--GAAGTCCATTAACAATGCATT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82807925 251 + 104043685 TCTTGTCCAGCTGTCTGAGCACGGTCCCACAGCTGACACAGCACACAGCTCAACACTCATAAACCATCCACATGG-GTGTGGTGAGAAATGGACCACACTGCTTGGTATACCCA-TAGAGCAAAATTAACCTGCCATTTCTGCAA-CCCCAAATTGATGAGCACATTAGAACTGATTTATAATTGCTTACTTCCAACTCAAAGGAGTATTTAAAATATTTGTTTTCT------TTAAAA-AAAATCCATTAACATTACATT i mm10.chr15 C 0 C 0 s canFam3.chr10 46080249 222 - 69331447 ------------------------TCCCGTGGCCCGCGCAGCACACCCACCCACGCCT-----CCATCCTGGT-GAGGGAGATGAGAAATGGGCCGCGCTGCTTGATGGAGCCATTAAAACAGAATTAATCTGCCATTTCTGCAG-CCCCAAATTGATGAGCACACAAGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTGTTCG------CTAGA--AAAGTCCATTAACATTGCATT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 52393 237 + 1056298 -CCTGTTCAAATG-CTGCACGGGACCCCATAGTTGCCAC------CCCACACCCACCT-----CCACCCTGGCAGAGTCAAATAAGAAATGGATTACACTGTTTGATGGAACCATTAAAGCAAAATTAACCTGCCTTTTGTGCAG-CCCCAAATTGATGAGCACACAAGATCTCATTTATAATTGCGTATTTCTACGTCACAACATTCCTTCCAGTATTTCTGTTCT------CT--A--AAAGTCCATTAACATTGCATT i dasNov3.JH570235 C 0 C 0 e nomLeu3.chr7b 106643287 100 - 115148730 M a score=132272.000000 s hg38.chr22_GL383582v2_alt 69925 8 + 162811 A-TTTTTTT s panTro5.chr22 28850266 8 + 37823149 A-TTTTTTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124591 9 + 50109623 ATTTTTTTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3146879 8 + 4464012 A-TTTTTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106643390 8 - 115148730 A-TTTTTTT i nomLeu3.chr7b M 100 C 0 s rheMac8.chr10 84258736 8 + 92844088 A-TTTTTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603741 8 - 96509753 A-TTTTTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7095454 8 - 13098629 A-TTTTTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4061982 8 - 4483953 A-TTTTTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692756 8 + 33263144 A-TTTTTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13966937 8 - 14338769 A-TTTTTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 910257 8 + 1946073 A-TTTTTTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939705 8 - 2117846 A-TTTTTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8854473 8 - 16357246 A-TTTTTTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1337206 8 - 1807191 A-TTTTTTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 15739 8 + 5963231 A-TTTTTTT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5706938 8 + 108171978 A-TTTTTTA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5070265 8 - 6317780 t-ttttttt i proCoq1.NW_012136747v1 C 0 I 628 s otoGar3.GL873526 36282091 8 - 42659167 A-TTTCTTA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82808176 8 + 104043685 A-TACTTTT i mm10.chr15 C 0 C 0 s canFam3.chr10 46080471 8 - 69331447 A-TTTTTTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 52630 8 + 1056298 A-TTTGTTT i dasNov3.JH570235 C 0 C 0 a score=171041.000000 s hg38.chr22_GL383582v2_alt 69933 10 + 162811 ATAACCCTTA s panTro5.chr22 28850274 10 + 37823149 ATAACCCTTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124600 10 + 50109623 ATAACCCTTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3146887 10 + 4464012 ATAACCCTTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106643398 10 - 115148730 ATAACCCTTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84258744 10 + 92844088 ATAACCCTTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603749 10 - 96509753 ATAACCCTTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7095462 10 - 13098629 ATAACCCTTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4061990 10 - 4483953 ATAACCCTTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692764 10 + 33263144 ATAACCCTTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13966945 10 - 14338769 ATAACCCTTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 910265 10 + 1946073 ATAACTCTTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939713 10 - 2117846 ATAACCCTTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8854481 10 - 16357246 ATAACCCTTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1337214 10 - 1807191 ATAACCCTTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 15747 10 + 5963231 ATAACCCTTA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5706946 10 + 108171978 ATAACCTTTA i micMur3.chr7 C 0 I 6 s otoGar3.GL873526 36282099 10 - 42659167 ATAACTTTTA i otoGar3.GL873526 C 0 I 6 s mm10.chr15 82808184 10 + 104043685 ACAATCCTCA i mm10.chr15 C 0 I 7 s canFam3.chr10 46080479 10 - 69331447 ATAACCTTTA i canFam3.chr10 C 0 I 6 s dasNov3.JH570235 52638 10 + 1056298 TTAACCTTTA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5070273 628 - 6317780 I a score=97377.000000 s hg38.chr22_GL383582v2_alt 69943 5 + 162811 ATGTT s panTro5.chr22 28850284 5 + 37823149 ATGTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124610 5 + 50109623 ATGTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3146897 5 + 4464012 ATGTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106643408 5 - 115148730 ATGTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84258754 5 + 92844088 ATGTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603759 5 - 96509753 ATGTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7095472 5 - 13098629 ATGTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4062000 5 - 4483953 ATGTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692774 5 + 33263144 ATGTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13966955 5 - 14338769 ATGTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 910275 5 + 1946073 ATGTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939723 5 - 2117846 ATGTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8854491 5 - 16357246 ATGTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1337224 5 - 1807191 ATGTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 15757 5 + 5963231 ATGTT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5706962 5 + 108171978 ATGTT i micMur3.chr7 I 6 C 0 s proCoq1.NW_012136747v1 5070901 5 - 6317780 ATGTT i proCoq1.NW_012136747v1 I 628 C 0 s otoGar3.GL873526 36282115 5 - 42659167 ATGTT i otoGar3.GL873526 I 6 C 0 s mm10.chr15 82808201 5 + 104043685 ATGCT i mm10.chr15 I 7 C 0 s canFam3.chr10 46080495 5 - 69331447 ATGTT i canFam3.chr10 I 6 C 0 s dasNov3.JH570235 52648 5 + 1056298 AAATT i dasNov3.JH570235 C 0 I 136 a score=907080.000000 s hg38.chr22_GL383582v2_alt 69948 58 + 162811 GATTGGAAATATGTCTTCATATCAACTTGAGTAAATCTGACTGTCCCCATACACTGGC s panTro5.chr22 28850289 58 + 37823149 GATTGGAAATATGTCTTCATATCAACTTGAGTAAATCTGACTGTCCCCATACACTGGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124615 58 + 50109623 GATTGGAAATATGTCTTCATATCAACTTGAGTAAATCTGACTGTCCCCATACACTGGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3146902 58 + 4464012 GATTGGAAATATGTCTTCATATCAACTTGAGTAAATCTGACTGTCCCCATACACTGGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106643413 58 - 115148730 AATTGGAAATATGTCTTCATATCAACTTGAGTAAATCTGACTGTCCCCATACACCGGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84258759 58 + 92844088 GATTGGAAATATGTCCTCATATCAACTTGAATAAATCTGACTGTCCCCATACACTGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603764 58 - 96509753 GATTGGAAATATGTCCTCATATCAACTTGAATAAATCTGACTGTCCCCATACACTGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7095477 58 - 13098629 GATTGGAAATATGTCCTCATATCAACTTGAATAAATCTGACTGTCCCCATACACTGGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4062005 58 - 4483953 GATTGGAAATATGTCTTCATATCAACTTGAATAAATCTGACTGTCCCCATACACTGGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692779 58 + 33263144 GATTGGAAGTATGTCCTCATATCAACTTGAATAAATCTGACTGTCTCCATACACTGGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13966960 58 - 14338769 GATTGGAAATATGTCCTCATATCAACTTGAATAAATCTGACTGTCCCCATACACTGGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 910280 58 + 1946073 GATTGGTAATATGTCCTCATATCAACCTGAATAAATCTGACTGTCCCCATACACTGGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939728 57 - 2117846 GATTGGAAA-ATGTCCTCACATCAACCTAAGTAAATCTGACTGTGTCCATACACTGTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8854496 58 - 16357246 GATTGGAAATACGTCCTCACATCAACCTAAGTAAATTTGACTGTGTCCATACACTGTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1337229 58 - 1807191 GATTGGAAATATGTCCTCACATCAACCTAAGTAAATCTGACTGTGTCCATATACTGTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 15762 58 + 5963231 GATTGGAAATATGTCCTCACATCAACCTAAGTAAATGTGACTGTGTCCATACAGTGTC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5706967 58 + 108171978 GATTGGAAATATGTCCTCATACCAACGTAAGTAAATCTGACTGTCCCCCTAAACTGCC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5070906 58 - 6317780 GATTGGAAATATGACCTCACATCAACTTAAGTAAATCTGACTGTCCCCCTAAACTGGC i proCoq1.NW_012136747v1 C 0 I 122 s otoGar3.GL873526 36282120 56 - 42659167 GATTGGAAGTATGTCCTCACATCAACTTAC-TAGATCTGACT-TCTCCACACACTGGT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82808206 46 + 104043685 GATTCAGAATATGTCCTCAAGTCAACTGCAGAAAGTCAGAATGGGC------------ i mm10.chr15 C 0 C 0 s canFam3.chr10 46080500 58 - 69331447 GATTGGAAATATGTCCTCATACCAACTTAAGTAAATCTGACCGTCCCCACACCCTGGC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 52789 57 + 1056298 GATGGGAAATACATTCTCGTATCAGGTTCAGTAAATCTGATCGTCTTC-TGTACTGAC i dasNov3.JH570235 I 136 C 0 a score=181419.000000 s hg38.chr22_GL383582v2_alt 70006 16 + 162811 CACACTCCACCTGCCC s panTro5.chr22 28850347 16 + 37823149 CACACTCCACCTGCCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124673 16 + 50109623 CACACTCCACCTGCCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3146960 16 + 4464012 CACACTCCACCTGCCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106643471 16 - 115148730 CACACTCCACCTGCCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84258817 16 + 92844088 CACACTCCACCTGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603822 16 - 96509753 CACACTCCACCTGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7095535 16 - 13098629 CACACTCTACCTGCCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4062063 16 - 4483953 CACACTCTACCTGCCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692837 16 + 33263144 CACACTCTACCTGCCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13967018 16 - 14338769 CACACTCTACCTGCCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 910338 16 + 1946073 CACACTCTACCTGCCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939785 16 - 2117846 CGAACTTCACCTGCCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8854554 16 - 16357246 CGAACTCCACCTGCCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1337287 16 - 1807191 CGAACTCCACCTGCCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 15820 16 + 5963231 CGAACTCCACCTGCCC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5707025 16 + 108171978 TGAGATCCCTCCACCC i micMur3.chr7 C 0 I 59 s otoGar3.GL873526 36282176 15 - 42659167 -GAGCTCCCCCACCCC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82808252 5 + 104043685 -----CCCAC------ i mm10.chr15 C 0 C 0 s canFam3.chr10 46080558 16 - 69331447 TGAGTTCCACCCACCC i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 52846 14 + 1056298 --CCCACCTCCTGCCC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5070964 122 - 6317780 I a score=309244.000000 s hg38.chr22_GL383582v2_alt 70022 36 + 162811 AGAGGAGT--GGCAGA-AGAACCCTATATTTTG-TTT---GCT s panTro5.chr22 28850363 36 + 37823149 AGAGGAGT--GGCAGA-ACCCCCCTAAATTTTG-TTT---GCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124689 36 + 50109623 AGAGGAGT--GGCAGA-AGAACCCTAAATTTTG-TTT---GCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3146976 36 + 4464012 AGAGGAGT--GGCAGA-AGAACCCTAAATTTTG-TTT---GCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106643487 36 - 115148730 AGAGGAGT--GGCAGA-TGAACCCTAAATTTTG-TTT---GCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84258833 36 + 92844088 AGAGGAGT--GGCGGA-GGAACCCTGAATTTTG-TTT---GCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603838 36 - 96509753 AGAGGAGT--GGCGGA-GGAACCCTGAATTTTG-TTT---GCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7095551 36 - 13098629 AGAGGAGT--GGCGGA-AGAACCCTGAATTTTG-TTT---GCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4062079 36 - 4483953 AGAGGAGT--GGCGGA-AGAACCCTGAATTTTG-TTT---GCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692853 36 + 33263144 AGAGGAGT--GGCGGA-AGAACCCTGAATTTTG-CTT---GCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13967034 36 - 14338769 AGAGGAGT--GGCGGA-AGAACCCTGAATTTTG-TTT---GCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 910354 36 + 1946073 AGAGGAGT--GGCAGA-AGAACCCTGAATTTTG-TTT---GCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939801 36 - 2117846 AGATGAGT--GGCACA-GGAGCCCAGAATTTTG-TTT---GTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8854570 37 - 16357246 AGATGAGT--GGCAGA-GGAGCCCAGAATTTTGTTTT---GTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1337303 36 - 1807191 AGATGAGC--GGCAGA-GGAGCCCAGAATTTTG-TTT---CCT i cebCap1.NW_016107750v1 C 0 I 27 s aotNan1.NW_018512383v1 15836 36 + 5963231 AGATGAGT--GGCAGA-GGAGCCCAGAATTTTG-TTT---GTT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36282191 35 - 42659167 --ATGAGT--GGCAGGCAGGAGCCTGGGTTTTG-TTT---GGT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82808257 35 + 104043685 --AGGA----GGCAAA-GAACCCTGGGGTTTGG-TTTCAGGCT i mm10.chr15 C 0 I 1 s canFam3.chr10 46080575 38 - 69331447 GGCGGAGCTGCGCAGA-GGGGCCCTGGGTTCGC-TTC---TCT i canFam3.chr10 I 1 I 7 s dasNov3.JH570235 52860 3 + 1056298 -----------ACA----------------------------- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5070964 122 - 6317780 I e micMur3.chr7 5707041 59 + 108171978 I a score=66744.000000 s hg38.chr22_GL383582v2_alt 70058 8 + 162811 TCCCGGCT s panTro5.chr22 28850399 8 + 37823149 TCCCGGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124725 8 + 50109623 TCCCGGCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3147012 8 + 4464012 TCCCGGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106643523 8 - 115148730 TCCCGGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84258869 8 + 92844088 TCCCAACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603874 8 - 96509753 TCCCAACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7095587 8 - 13098629 TCCCAACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4062115 8 - 4483953 TCCCAACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692889 8 + 33263144 TCCCAACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13967070 8 - 14338769 TCCCAACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 910390 8 + 1946073 TCCCAATT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939837 8 - 2117846 TCCTGGCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8854607 8 - 16357246 TCCTGGCT i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 15872 8 + 5963231 TCCTGGCT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36282226 8 - 42659167 TCAAAGCT i otoGar3.GL873526 C 0 I 5 s mm10.chr15 82808293 8 + 104043685 TGCTGGCA i mm10.chr15 I 1 I 6 s canFam3.chr10 46080620 8 - 69331447 CTGCAGCT i canFam3.chr10 I 7 C 0 s dasNov3.JH570235 52863 2 + 1056298 ------CT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5070964 122 - 6317780 I e micMur3.chr7 5707041 59 + 108171978 I e cebCap1.NW_016107750v1 1337339 27 - 1807191 I a score=47760.000000 s hg38.chr22_GL383582v2_alt 70066 9 + 162811 -----GCGT------GGCCA s panTro5.chr22 28850407 9 + 37823149 -----GCGT------GGCCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124733 9 + 50109623 -----GCGT------GGCCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3147020 9 + 4464012 -----GCGT------GGCCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106643531 9 - 115148730 -----GCGT------GGCCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84258877 9 + 92844088 -----GCGT------GGCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603882 9 - 96509753 -----GCGT------GGCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7095595 9 - 13098629 -----GCGT------GGCCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4062123 9 - 4483953 -----GCGT------GGCCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692897 9 + 33263144 -----GCGT------GGCCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13967078 9 - 14338769 -----GCGT------GGCCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 910398 9 + 1946073 -----GCGT------GGCCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939845 15 - 2117846 -----CTGCTGCAAGGGCCA i calJac3.chrUn_GL286373 C 0 I 8 s saiBol1.JH378157 8854615 15 - 16357246 -----CTGCTGCAAGGGCCA i saiBol1.JH378157 C 0 I 8 s aotNan1.NW_018512383v1 15880 15 + 5963231 -----CTGCTGCAAGGGCCA i aotNan1.NW_018512383v1 C 0 I 8 s micMur3.chr7 5707100 9 + 108171978 -----GCCT------GGCCT i micMur3.chr7 I 59 C 0 s otoGar3.GL873526 36282239 9 - 42659167 -----GCAC------AGGCC i otoGar3.GL873526 I 5 C 0 s mm10.chr15 82808307 9 + 104043685 -----ACCT------TGCCT i mm10.chr15 I 6 C 0 s canFam3.chr10 46080628 9 - 69331447 -----GCGA------GGACC i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 52865 9 + 1056298 GAGCTGCAT----------- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5070964 122 - 6317780 I e cebCap1.NW_016107750v1 1337339 27 - 1807191 I a score=325465.000000 s hg38.chr22_GL383582v2_alt 70075 39 + 162811 T---------CGAGAGGCCAGGAATGGGACAGACAGGT--TCTGATCATG--- s panTro5.chr22 28850416 39 + 37823149 T---------CGAGAGGCCAGGAATGGGACAGACAGGT--TCTGATCATG--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124742 39 + 50109623 T---------CGAGAGGCCAGGAATGGGACAGACAGGT--TCTGATCATG--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3147029 39 + 4464012 T---------CGAGAGGCCAGGAATGGGACAGACAGGT--TCTGATCATG--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106643540 39 - 115148730 T---------CGAGAGGCCAGGAACGGGACAGACCGGT--TCTGATCATG--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84258886 39 + 92844088 T---------CGAGAGGCTAGGAATGGGGCAGACCGGA--TCTGATCGTG--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603891 39 - 96509753 T---------CGAGAGGCTAGGAACGGGACAGACCGGA--CCTGATCGTG--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7095604 39 - 13098629 T---------CGAGAGGCTAGGAATGGGACAGACCGGA--TCTGATCATG--- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4062132 39 - 4483953 T---------CGAGAGGCTAGGAATGGGACAGACCGGA--TCTGATCATG--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692906 39 + 33263144 T---------CGAGAGGCTAGGAATGGGACAGACCGGA--TCTGATCATG--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13967087 39 - 14338769 T---------CGAGAGGCTAGGAATGGGACAGACCGGA--TCTGATCATG--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 910407 39 + 1946073 T---------TGACAGGCTAGGAATGGGACAGACCGGA--TCTGATCATG--- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939868 38 - 2117846 T---------CCAGAGGCTGGGAAT-GGACAGACCAGG--TCTGATGATG--- i calJac3.chrUn_GL286373 I 8 C 0 s saiBol1.JH378157 8854638 39 - 16357246 T---------CCAGAGGCTGGGAATGGGACAGACCAGG--TCTGATGATG--- i saiBol1.JH378157 I 8 C 0 s cebCap1.NW_016107750v1 1337366 39 - 1807191 T---------CCAGAAGCTGGGAATGGGACAGACCAGG--TCTGATGATG--- i cebCap1.NW_016107750v1 I 27 C 0 s aotNan1.NW_018512383v1 15903 39 + 5963231 T---------CCAGAGGCTGGGACTGGGACAGACCAGG--TCTGATGATG--- i aotNan1.NW_018512383v1 I 8 C 0 s micMur3.chr7 5707109 38 + 108171978 T---------TGAGAGGCTGGGAA-GGGATAGACCAGGTTTCTGGGCA----- i micMur3.chr7 C 0 C 0 s otoGar3.GL873526 36282248 41 - 42659167 CATGG-----TGGGTGGCCAGGGA-GGGACAGACTAGG---CTGAGGGTG--- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82808316 39 + 104043685 T---------CCAGAGGAAAAGGAACAAAGGGATTGGG--ACTGATGGTA--- i mm10.chr15 C 0 C 0 s canFam3.chr10 46080638 38 - 69331447 -CCGGGTGCAGGTGCGGGTGTGGGTGCGGGGGGCTGGG--G------------ i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 52874 20 + 1056298 -------------------------------TCCAAGG--TCTGCTGAGGATT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5070964 122 - 6317780 I a score=24323307.000000 s hg38.chr22_GL383582v2_alt 70114 1496 + 162811 GCCTCCTCTG--G---AGAACCAGAGCT--ACCC--TTTGGGGGTTAGAATGGGAGAAGGAAGAGACGCA--TTCACTTTAAAGTAAACAGAAG--AGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattttttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----ACAAAACAAA-----ACAACACAACA----TAAAGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTATAAAAATGAAAGCAAAAAGAAAAAGGGGTTAAATGGGTGTTCCTGGTCAGCTTA----ACCCACTCTGATCA-------CA----GCGACAGTCCCTCCCC----GTCCCTGCCTACAGCTCACACTGCCAGCTCTGGCAACACAGGCCTGGACCTCCTCCCATCCCCACGGGTCCCTGTGGGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACAGGGGGCCC--CAGAGG--------AGGGTCATCCCTTGATTTTG-CTGCTGC-----------TGTGTA--CACTT------GATGGGGTCCT---TGAG-GTCCTC-ACC--AGCCACAGTGACCCAGGACACAGCTATG--ACCTC-AGG--CATCTGCCAATTTCA-----------------CCC-CC----aaaaag----aaaaaatt--a------aaaaaaa-aaaa-------ccataaataaaTAGTGTTTCTGGAAA-TG----AAAAAAAA-TTTA-TTTTTGTGTTTAAACATCATTCCCC-TACTCTTGAAAACATGGACCATCCCTGTA-TT-TCCCCCTCCCCC------AAAACCTTCCCACTTTGAGACAAATTAATGAC-AAAAGGATGGTTCTGCTGTGGTT----TGCTTTTTCAATCCTGGGTCTAGTG-TTTTCTGAACTGGTGTGAGACAGGCTAAAGATCAACGCCACACACACA-CCCCGTCCTTCATGAGATGAGGGTTTGTTCAGTTCAATCTCACATTTAAATTTCACTTGTCATCGGAACAAATTT-GGAGATCTTTAACGAGATAATTTTAAAACAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAatagatt----tatatatatatattt---atCCCTCCCT--------------------------------------------TTTAATTccccccaccctttccccatcatcccacccct-cccccct-------------------------------ccccccACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACGTCTTGGGTCTTTC-TTTCCTGTGGTGTCACTGGTTTGAGTGTGATGTGAGAACTTAA----GGAAGTGCTGGCATGGGCAGGCAC------G-Cgggcggggcggggcggggcagggca-----ggg--tgtggcTGCACGGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACACACAGTGAAGGCCAGGA-GCCTCCACAGGGTC-CACCACC-AACAGC s panTro5.chr22 28850455 1504 + 37823149 GCCTCCTCTG--G---AGAACCAGAGCT--ACCCCCTTTGGGGGTTAGAATGGGAGAAGGAAGAGACGCA--TTCACTTTAAGGTAAACAGAAG--AGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattttttg--attttttttgttt--ttttgtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----ACAAAACAAA-----ACAACACAACA----TAAAGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTATAAAAATGAAAGCAAAAAGAAAAAGGGGTTAAATGGGTGTTCCTGGTCAGCTTA----ACCCACTCTGATCA-------CA----GCGACAGTCCCTCCCC----GTCCCTGCCTACAGCTCACACTGCCAGCTCTGGCAACACAGGCCTGGGCCTCCTCCCATCCCCACGGGTCCCTGTGGGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACACGGGGCCC--CAGAGG--------AGGGTCATCCCTTGATTTTG-CTGCTGC-----------TGTGTA--CACTT------GATGGGGTCCT---TGAG-GTCCTC-ACC--AGCCACAGTGACCCAGGACACAGCTATG--ACCTC-AGG--CATCTGCCAATTTCA-----------------CCC-CC----Caaaag----aaaaaatt--a------aaaaaaa-aaaa----aaaccataaataaaTAGTGTTTCTGGAAA-TG----AAAAAAAAATTTA-TTTTTGTGTTTAAACATCATTCCCC-TACTCTTGAAAACATGGACCATCCCTATA-TT-TCCCCCTCCCCC------AAAACCTTCCCACTTTGAGACAAATTAATGAC-AAAAGGATGGTTCTGCTGTGGTT----TGCTTTTTCAATCCTGGGTCTAGTG-TTTTCTGAACTGGTGTGAGACAGGCTAAAGATCAACGCCACACACACA-CCCCGTCCTTCATGAGATGAGGGTTTGTTCAGTTCAATCTCACATTTAAATTTCACTTGTCATCGGAACAAATTT-GGAGATCTTTAACTAGATAATTTTAAAACAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTT-TTATCCCTCCCT--------------------------------------------TTTAATTccccccaccctttccccatcatcccacccct-cccccct-------------------------------ccccccACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACGTCTTGGGTCTTTC-TTTCCTGTGGTGTCACTGGTTTGAGTGTGATGTGAGAACTTAA----GGAAGTGCTGGCATGGGCAGGCAC------G-Cgggcggg-cggggcggggcagggca-----ggg--tgtggcTGCACGGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACAGACAGTGAAGGCCAGGA-GCCTCCACAGGGTC-CACCACC-AACAGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41124781 1505 + 50109623 GCCTCCTCTG--G---AGAACCAGAGCT--ACCC--TTTGGGGGTTAGAATGGGAGAAGGAAGAGACGCA--TTCACTTTAAAGTAAACAGAAG--AGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattgtttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----ACAAAACAAA-----ACAACACAACA----TAAAGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTATAAAAATGAAAGCAAAAAGAAAAAGGGGTTAAATGGGTGTTCCTGGTCAGCTTA----ACCCACTCTGATCA-------CA----GCGACAGTCCCTCCCC----GTCCCTGCCTACAGCTCACACTGCCAGCTCTGGCAACACAGGCCTGGGCCTCCTCCCATCCCCACGGGTCCCTGTGGGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACAGGGGGCCC--CAGAGG--------AGGGTCATCCCTTGATTTTG-CTGCTGC-----------TGTGTA--CACTT------GATGGGGTCCT---TGAG-GTCCTC-ACC--AGCCACAGTGACCCAGGACACAGCTATG--ACCTC-AGG--CATCTGCCAATTTCA-----------------CCC-CC----Caaaag----aaaaattt--a------aaaaaac-aaaaaacaaaaccataaataaaTAGTGTTTCTGGAAA-TG----AAAAAAAA-TTTA-TTTTTGTGTTTAAACATCATTCCCC-TACTCTTGAAAACATGGACCATCCCTATA-TT-TCCCCCTCCCCC------AAAACCTTCCCACTTTGAGACAAATTAATGAC-AAAAGGATGGTTCTGCTGTGGTT----TGCTTTTTCAATCCTGGGTCTAGTG-TTTTCTGAACTGGTGTGAGACAGGCTAAAGATCAACGCCACACACACA-CCCCGTCCTTCATGAGATGAGGGTTTGTTCAGTTCAATCTCACATTTAAATTTCACTTGTCATCGGAACAAATTT-GGAGATCTTTAAGTAGATAATTTTAAAACAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTTTTTATCCCTCCCT--------------------------------------------TTTAATTccccccaccctttccccatcatcccacccct-cccccct-------------------------------ccccccACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACGTCTTGGGTCTTTC-TTTCCTGTGGTGTCACTGGTTTGAGTGTGATGTGAGAACTTAA-----GAAGTGCTGGCATGGGCAGGCAC------G-Cgggcggggtggggcggggcagggca-----ggg--tgtggcTGCACGGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACAGACAGTGAAGGCCAGGA-GCCTCCACAGGGTC-CACCACC-AACAGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3147068 1493 + 4464012 GCCTCCTCTG--G---AGAAACAGAGCT--ACCC--TTTGGGGGTTAGAATGGGAGAAGGAAGAGACGCA--TTCACTTTAAAGTAAACAGAAG--AGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattttttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGA-CCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----ACAAAACAAA-----ACAACACAACA----TAAAGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTATAAAAATGAAAGCAAAAAGAAAAAGGGGTTAAATGGGTGTTCCTGGTCAGCTTA----ACCCACTCTGATCA-------CA----GCGACAGTCCCTCCCC----GTCCCTGCCTACAGCTCACACTACCAGCTCTGGCAACACAGGCCTGGGCCTCCTCCCATCCCCACGGGTCCCTGTGGGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACAGGGGGCCC--CAGAGG--------AGGGTCATCCCTTGATTTTG-CTGCTGC-----------TGTGTA--CACTT------GATGGGGTCCT---TGAG-GTCCTC-ACC--AGCCACAGTGACCCAGGACACAGCTATG--ACCTC-AGG--CATCTGCCAATTTCA-----------------CCC-GC----aaaaag----aaaaaatt--a------aaaaaaa-aaaa-------ccataaataaaTAGTGTTTCTGGAAA-TG----AAAAAAAA-TTTA-TTTTTGTGTTTAAACATCATTCCCC-TACTCTTGAAAACATGGACCATCCCTATA-TT-TCCCCCTCCCCC------AAAACCTTCCCACTTTGAGACAAATTAATGAC-AAAAGGATGGTTCTGCTGTGGTC----TGCTTTTTCAATCCTGGGTCTAGTG-TTTTCTGAACTGGTGTGAAACAGGCTAAAGATCAACGCCACACACACA-CCCCGTCCTTCATGAGATGAGGGTTTGTTCAGTTCAATCTCACATTTAAATTTCACTTGTCATCGGAACAAATTT-GGAGATCTTTAACTAGATAATTTTAAAACAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTTTTTATCCCTCCCT--------------------------------------------TTTAATTccccccaccctttccccgtcatcccacccct-cccccct-------------------------------ccccccACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACGTCTTGGGTCTTTC-TTTCCTGTGGTGTCACTGGTTTGAGTGTGATGTGAGAACTTAA----GGAAGTGCTGGCATGGGCAGGCAC------G-Cgggcggg-----gcggggcagggca-----ggg--tgtggcTGCACGGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACAGACAGTGAAGGCCAGGA-GCCTCCACAGGGAC-CACCACC-AACAGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106643579 1502 - 115148730 GCCTCCTCTG--G---AGAACCAGAGCT--ATCC--TTTGGGGGTTAGAATCGGAGAAGGAAGAGACGCA--TTCACTTTAAATTAAACAGAAG-AAGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattttttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTGTTTTTTTAAAACTCAGATATTTAAAAATTATACAGTTT-----acaaaacaaaacaacacaacacaaca----taaAGAATCATGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTATAAAAATGAAAGCAAAAAGAAAAACGGGTTAAATGGGTGTTCCTGATCAGCTTA----ACCCACTCTGATCA-------CA----GCGACAGTCCCTCCCC----ATCCCTGTCTACAGCTCACACTGCCAGCTCTGGCAGCACAGGCCTGGGCCTCCTCCCATCCCCACGGGTCCCTGTGGGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACAGGGGGCCC--CAGAGG--------AGGGTAATCCCTTGATTTTG-CTGCTGC-----------TGTGTA--CACTT------GATGGGGTCCT---TGAG-GTCCTC-ACC--AGCCACAGTGACCCAGGACACAGCTATG--ACCTC-AGG--CATCTGCCAATTTCA-----------------CCC-CC----AAAAAG----AAAAAATT--T------TAAAAA-------------ACATAAATAAATAGTGTTTCTGGAAA-TG----AAAAAAAAATTTA-TTTTTGCGTTTAAACATCATTCCCC-TACTCTTGAAAACATGGACCATCCCTATA-TT-TCCCCCTCCCCC------AAAACCTTCCCACTTTGAGACAAATTAATGAC-AAAAGGATGGTTCTGGTGTGGTTTGTCTGCTTTTTCAATCCTGGGTCTAGTGTTTTTCTGAACTGGTGTGAGACAGGCTAAAGATCAACGCCACACACACA-CCCCGTCCTTTATGAGATGAGGGTTTG-TCAGTTCAATTTCACATTTAAATTTCACTTGTCATCGGAACAAATTTGGGAGATCTTTAACTAGATAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTTTTTATCCCTCCCT--------------------------------------------TTTAATTccccccaccctttccccatcatcccacccct-cccccct-------------------------------ccccccACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACGTCTTGGGTCTTTC-TTTCCTGTGGTGTCACTGGTTTGAGTGTGATGTGAGAACTTAAGGAAGGAAGTGCTggcatgggcaggcac------g-cggg---------gcggggcagggca-----ggg--TGTGGCTGCACAGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGATAAGGGACAGACAGTGAAGGCCAGGA-GCCTCCACAGGGTC-CACGACTAAACAGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84258925 1475 + 92844088 GCCTCCTCTG--G---AGAACCAGAGCT--GCCC--TTTGGGGGTGAGAATGGGAGAAGGAAGAGACGCA--TTCGCTTTAAATTAAACAAAAG-AAGGAAACAAGGTTAAAATGAA-Gtttatt-tttttttgattttttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----acaaaacaaaacaaaacaacacaaca----taaaGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTATAAAAATGAAAGCAAAAAGAAAAAGGGGCTAAATGGGTGTTCCTGGTCAGCTTA----ACCCACTCTGATCA-------CA----GCGACAGTCCCTCCCC----ATCCCTGCCTACAGCTCACACTGCCGGCTCTGGCAGCACAGGCCTGGGCCTCCTCTCATCCCCACGGGTACCTGTGGGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACAGGGGGCCC--CAGAGG--------AGGGTCCTCCCTCGGTTTTG-CTGCTGC-----------TGTGTA--CA------------------CT---TAGG-GTCCTC-ACC--AGCCACAGTGACCCAGGACACAGCTATG--ACCTC-AGG--CATCTGCCAATTTCA-----------------CCC-CC--------------AAAAAGTT--A------AAAAAA---------------ATAAATAAATAGTGTTTCTGGAAA-TG----AAAAAAAA--TTA-TTTTTGTGTTTAAACATCATTCCCC-TGCTCTTGAAAACATGGACCGTCCCTATA-TT-TCCCCCTCCCCC-----TAAAACCTTCCCACTTTGAGACAAATTAATGAC-AAAAGGATGGTTCTGGTGTGGTTTTCCTGCTTTTTCAATCCTGGGTCTAGTG-TTTTCTGAACTGGTGTGAGACAGGCTAAAGATCAAAGC--CACACACA-CCCCGTCCTTTATGAGATGAGGGTTTGTTCAGTTCAATTTCACATTTAAATTTCACTTGTCATCAGAACAAATTT-GGAGATCTTTAACTAGATAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTTTTTATCCCTCCCT--------------------------------------------TTTAATTccccccaccctttccccgtcatcccacccct-cccccct-------------------------------ccccccACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACGTCTTGGGTCTTTC-TTTCCCGTGGTGTCACCGGTTTGAGTGTGATGTGAGAACTTAG-GAAGGAAGTGCTGGCATGGGCAGGCAC------g-cggg---------gcggggcggggca-----ggg--tgtggcTGCACGGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACAGACACTGAAGGCCAGGA-GCCTCCACAGGGTC-CACCACC-AACAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87603930 1475 - 96509753 GCCTCCTCTG--G---AGAACCAGAGCT--ACCC--TTTGGGGGTGAGAATGGGAGAAGGAAGAGACGCA--TTCGCTTTAAATTAAACAAAAG-AAGGAAACAAGGTTAAAATGAA-Gtttatt-tttttttgattttttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----acaaaacaaaacaaaacaacacaaca----taaaGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTATAAAAATGAAAGCAAAAAGAAAAAGGGGCTAAATGGGTGTTCCTGGTCAGCTTA----ACCCACTCTGATCA-------CA----GCGACAGTCCCTCCCC----GTCCCTGCCTACAGCTCACACTGCCGGCTCTGGCAGCACAGGCCTGGGCCTCCTCTCATCCCCACGGGTACCTGTGGGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACAGGGGGCCC--CAGAGG--------AGGGTCCTCCCTCGGTTTTG-CTGCTGC-----------TGTGTA--CA------------------CT---TAGG-GTCCTC-ACC--AGCCACAGTGACCCAGGACACAGCTATG--ACCTC-AGG--CATCTGCCAATTTCA-----------------CCC-CC--------------AAAAAGTT--A------AAAAAA---------------ATAAATAAATAGTGTTTCTGGAAA-TG----AAAAAAAA--TTA-TTTTTGTGTTTAAACATCATTCCCC-TGCTCTTGAAAACATGGACCGTCCCTATA-TT-TCCCCCTCCCCC-----TAAAACCTTCCCACTTTGAGACAAATTAATGAC-AAAAGGATGGTTCTGGTGTGGTTTTCCTGCTTTTTCAATCCTGGGTCTAGTG-TTTTCTGAACTGGTGTGAGACAGGCTAAAGATCAAAGC--CACACACA-CCCCGTCCTTTATGAGATGAGGGTTTGTTCAGTTCAATTTCACATTTAAATTTCACTTGTCATCAGAACAAATTT-GGAGATCTTTAACTAGATAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTTTTTATCCCTCCCT--------------------------------------------TTTAATTccccccaccctttccccgtcatcccacccct-cccccct-------------------------------ccccccACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACGTCTTGGGTCTTTC-TTTCCCGTGGTGTCACCGGTTTGAGTGTGATGTGAGAACTTAG-GAAGGAAGTGCTGGCATGGGCAGGCAC------g-cggg---------gcggggcggggca-----ggg--tgtggcTGCACGGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACAGACACTGAAGGCCAGGA-GCCTCCACAGGGTC-CACCACC-AACAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7095643 1477 - 13098629 GCCTCCTCTG--G---AGAACCAGAGCT--ACCC--TTTGGGGGTTAGAATGGGAGAAGGAAGAGACGCA--TTCGCTTTAAATTAAACAAAAG-AAGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattttttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----acaaaacaaaacaaaacaacacaaca----taaaGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTATAAAAATGAAAGCAAAAAGAAAAAGGGGCTAAATGGGTGTTCCTGGTCAGCTTA----ACCCACTCTGATCA-------CA----GCGACAGTCCCTCCCC----GTCCCTGCCTACAGCTCACACTGCCGGCTCTGGCAGCACAGGCCTGGGCCTCCTCTCATCCCCACGGGTACCTGTGGGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACAGGGGGCCC--CAGAGG--------AGGGTCATCCCTCGGTTTTG-CTGCTGC-----------TGTGTA--CA------------------CT---TAGG-GTCCTC-ACC--AGCCACAGTGACCCAGGACACAGCTATG--ACCTC-AGG--CATCTGCCAATTTCA-----------------CCC-CC--------------AAAAAGTT-AA------AAAAAA---------------ATAAATAAATAGTGTTTCTGGAAA-TG----AAAAAAAA--TTA-TTTTTGTGTTTAAACATCATTCCCC-TGCTCTTGAAAACATGGACCGTCCCTTTA-TT-TCCCCCTCCCCC-----TAAAACCTTCCCACTTTGAGACAAATTAATGAC-AAAAGGATGGTTCTGGTGTGGTTTTCCTGCTTTTTCAATCCTGGGTCTAGTG-TTTTCTGAACTGGTGTGAGACAGGCTAAAGATCAAAGC--CACACACA-CCCCGTCCTTTATGAGATGAGGGTTTGTTCAGTTCAATTTCACATTTAAATTTCACTTGTCATCAGAACAAATTT-GGAGATCTTTAACTAGATAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTTTTTATCCCTCCCT--------------------------------------------TTTAATTccccccaccctttccccgtcatcccacccct-cccccct-------------------------------ccccccACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACGTCTTGGGTCTTTC-TTTCCCGTGGTGTCACCGGTTTGAGTGTGATGTGAGAACTTAG-GAAGGAAGTGCTGGCATGGGCAGGCAC------g-cggg---------gcggggcggggca-----ggg--tgtggcTGCACGGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACAGACACTGAAGGCCAGGA-GCCTCCACAGGGTC-CACCACC-AACAGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4062171 1487 - 4483953 GCCTCCTCTG--G---AGAACCAGAGCT--ACCC--TTTGGGGGTTAGAATGGGAGAAGGAAGAGACGCA--TTCGCTTTAAATTAAACAAAAG-AAGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattttttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----acaaaacaaaacaaaacaacacaaca----taaaGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTATAAAAATGAAAGCAAAAGGAAAAAGGGGCTAAATGGGTGTTCCTGGTCAGCTTA----ACCCACTCTGATCA-------CA----GCGACAGTCCCTCCCC----GTCCCTGCCTACAGCTCACACTGCCGGCTCTGGCAGCACAGGCCTGGGCCTCCTCTCATCCCCACGGGTACCTGTGGGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACAGGGGGCCC--CAGAGG--------AGGGTCATCCCTCGGTTTTG-CTGCTGC-----------TGTGTA--CA------------------CT---TAGG-GTCCTC-ACC--AGCCACAGTGACCCAGGACACAGCTATG--ACCTC-AGG--CATCTGCCAATTTCA-----------------CCC-CC----AAAAAG----AAAAAGTT--A------AAAAAA---------------ATAAATAAATAGTGTTTCTGGAAA-TG----AAAAAAAA--TTA-TTTTTGTGTTTAAACATCATTCCCC-TGCTCTTGAAAACATGGACCGTCCCTATA-TT-TCCCCCTCCCCC-----TAAAACCTTCCCACTTTGAGACAAATTAATGAC-AAAAGGATGGTTCTGGTGTGGTTTTCCTGCTTTTTCAATCCTGGGTCTAGTG-TTCTCTGAACTGGTGTGAGACAGGCTAAAGATCAAAGC--CACACACA-CCCCGTCCTTTATGAGATGAGGGTTTGTTCAGTTCAATTTCACATTTAAATTTCACTTGTCATCAGAACAAATTT-GGAGATCTTTAACTAGATAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTTTTTATCCCTCCCT--------------------------------------------TTTAATTccccccaccctttccccgtcatcccacccct-cccccct-------------------------------ccccccACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACGTCTTGGGTCTTTC-TTTCCCGTGGTGTCACCGGTTTGAGTGTGATGTGAGAACTTAG-GAAGGAAGTGCTGGCATGGGCAGGCAC-gcgggg-cggg---------gcggggcggggca-----ggg--tgtggcTGCACGGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACAGACACTGAAGGCCAGGA-GCCTCCACAGGGTC-CACCACC-AACAGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24692945 1484 + 33263144 GCCTCCTCTG--G---AGAACCAGAGCT--ACCC--TTTGGGGGTTAGAATGGGAGAAGGAAGAGACGCA--TTTGCTTTAAATTAAACAAAAG-CAGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattttttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----acaaaacaaaacaaaacaacacaaca----taaaGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTATAAAAATGAAAGCAAAAAGAAAAAGGGGCTAAATGGGTGTTCCTGGTCAGCTTA----ACCCACTCTGATCA-------CA----GCGACAGTCCCTCCCC----GTCCCTGCCTACAGCTCACACTGCCGGCTCTGGCAGCACAGGCCTGGGCCTCCTCTCATCCCCACGGGTACCTGTGGGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACAGGGGGCCC--CAGAGG--------AGGGTCATCCCTCGGTTTTG-CTGCTGC-----------TGTGTA--CA------------------CT---TAGG-GTCCTC-ACC--AGCCACAGTGACCCAGGACACAGCTATG--ACCTC-AGG--CATCTGCCAATTTCA-----------------CCC-CC----AAAAAG----AAAAAGTT-AA------AAAAAA---------------ATAAATAAATAGTGTTTCTGGAAA-TG----AAAAACAA--ATA-TTTTTGTGTTTAAACATCATTCCCC-TGCTCTTGAAAACATGGACCGTCCCTATA-TT-TCCCCCTCCCCC-----TAAAACCTTCCCACTTTGAGACAAATTAATGAC-AAAAGGATGGTTCTGGTGTGGTTTTTCTGCTTTTTCAATCCTGGGTCTAGTG-TTTTCTGAACTGGTGTGAGACAGGCTAAAGATCAAAGC--CACACACA-CCCCGTCCTTTATGAGATGAGGGTTTGTTCAGTTCAATTTCACATTCAAATTTCACTTGTCATCAGAACAAATTT-GGAGATCTTTAACTAGATAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTTTTTATCCCTCCCT--------------------------------------------TTTAATTCCCCCCACCCTTTCCCCGTCATCCCACCCCTCCCCCCCT-------------------------------CCCCCCACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACGTCTTGGGTCTTTC-TTTCCCGTGGTGTCACTGGTTTGAGTGTGATGTGAGAACTTAG-GAAGGAAGTGCTGGCATGGGCAGGCAC------g-cggg---------gtggggcggggca-----ggg--tgtggcTGCACGGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGCAAGACAAGGGACAGACACTGAAGGCCAGGA-GCCTCCACAGGGTC-CACCACC-AACAGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13967126 1482 - 14338769 GCCTCCTCTG--G---AGAACCAGAGCT--ACCC--TTTGGGGGTTAGAATGGGAGAAGGAAGAGACGCA--TTCACTTTAAATTAAACAAAAG-AAGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattttttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----acaaaacaaaacaaaacaacacaaca----taaaGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTATAAAAATGAAAGCAAAAAGAAAAAGGGGCTAAATGGGTGTTCCTGGTCAGCTTA----ACCCACTCTGATCA-------CA----GCGACAGTCCCTCCCC----ATCCCTGCCTACAGCTCACACTGCCGGCTCTGGCAGCACAGGCCTGGGCCTCCTCTCATCCCCACGGGTACCTGTGGGTC------AGGGCA-CAGCTGCCTGGAACGTGCTGAGGACAGGGGGCCC--CAGAGG--------AGGGTCATCCCTCGGTTTTG-CTGCTGC-----------TGTGTA--CA------------------CT---TAGG-GTCCTC-ACC--AGCCACAGTGACCCAGGACACAGCTATG--ACCTC-AGG--CATCTGCCAATTTCA-----------------CCC-CC----AAAAAG----AAAAAGGT--A------AAAAAA---------------ATAAATAAATAGTGTTTCTGGAAA-TG----AAAAAAAA--TTA-TTTTTGTGTTTAAACATCATTCCCC-TGCTCTTGAAAACATGGACTGTCCCTATA-TT-TCCCCCTCCCAC-----TAAAACCTTCCCACTTTGAGACAAATTAATGAC-AAAAGGATGGTTCTGGTGTGGTTTTCCTGCTTTTTCAATCCTGGGTCTAGTG-TTTTCTGAACTGGTGTGAGACAGGCTAAAGATCAAAGC--CACACACA-CCCCGTCCTTTATGAGATGAGGGTTTGTTCAGTTCAATTTCACATTTAAATTTCACTTGTCATCAGAACAAATTT-GGAGATCTTTAACTAGATAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTTTTTATCCCTCCCT--------------------------------------------TTTAATTccccccaccctttccccgtcatcccacccct-cccccct-------------------------------ccccccACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACGTCTTGGGTCTTTC-TTTCCCGTGGTGTCACCGGTTTGAGTGTGATGTGAGAACTTAG-GAAGGAAGTGCTGGCATGGGCAGGCAC------g-cggg---------gcggggcggggca-----ggg--tgtggcTGCACGGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACAGACACTGAAGGCCAGGA-GCCTCCACAGGGTC-CACCACC-AACAGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 910446 1484 + 1946073 GCCTCCTCTG--G---AGAACCAGAGCT--ACCC--TTTGGGAGTTAGAATGGGAGAAGGAAGAGACGCA--TTCACTTTAAATTAAACAAAAG-AAGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattttttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----acaaaacaaaacaaaacaacacaaca----taaaGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTATAAAAATGAAAGCAAAAAGAAAAAGGGGCTGAATGGGTGTTCCTGGTCAGCTTA----ACCCACTCTGATCA-------CA----GCGACAGTCCCTCCCC----GTCCCTGCCTACAGCTCACACTGCCGGCTCTGGCAGCACAGGCCTGGGCCTCCTCTCATCCCCACGGGTACCTGTGGGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACAGGGAGCCC--CAGAGG--------AGGGTCATCCCTCGATTTTG-CTGCTGC-----------TGTGTA--CA------------------CT---TAGG-GTCCTC-ACC--AGCCACAGTGACCCAGGACACAGCAATG--ACCTC-AGA--CATCTGCCAATTTCA-----------------CCC-CC----aaaaag----aaaaagttaaa------aaaaaa---------------ataaataaaTAGTGTTTCTGGAAA-TG----AAAACAAA--TTA-TTTTTGTGTTTAAACATCATTCCCC-TGCTCTTGAAAACATGGACCGTCCCTATA-TT-TCCCCCTCCCTC-----TAAAACCTTCCCACTTGGAGACAAATTAATGAC-AAAAGGATGGTTCTGGTGTGGTTTGTCTGCTTTTTCAATCCTGGGTCTAGTG-TTTTCTGAACTGGTGTGAGACAGGCTCAAGATCAAAGC--CACACACA-CCCCGTTCTTTATGAGATGAGGGTTTGTTCAGTTCAATTTCACATTTAAATTTCACTTGTCATCAGAACAAATTT-GGAGATCTTTAACTAGATAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTTTTTATCCCTCCCT--------------------------------------------TTTAATTccccccaccctttccccatcatcccacccct-cccccct-------------------------------ccccccACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACGTCTTGGGTCTTTC-TTTCCTGTGGTGTCACCGGTTTGAGTGTGATGTGAGAACTTAG-GAAGGAAGTGCTGGCATGGGCAGGCAC------g-cggg---------gcggggcggggca-----ggg--tgtggcTGCACGGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACAGACACTGAAGGCCAGGA-ACCTCCACAGGGTC-CACCACC-AACAGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1939906 1451 - 2117846 GCTGCCTCTG--G---AGAACCAGAGCT--ACCC--TTTGGGGGCTAGAATGGGAGAAGGAAGAGACGCA--TTCACTTTAAATTAAACAAAAG-AAGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattttttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----ACAAAACAAAACAACACAACACAACA----TAAAGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTACTTTACAAAAATGAAAGCAAAAAGAAAAAAGGGTTAAATGGGTGTTCCTGGTCAGCTTA----ACCCACACTGATCA-------CA-------ACAGTCCCTCCCC----GTCCCTGCCCACAGCTCACAGTGCCAGCTGTGGTGGTGCAGGCCTGGGCCTCCTCCCATCCCCAAGGGTTCCTGTGGGTC------AGGGAA-CAGCTGCCTGGAATGTGCTGAGGACAGGGGGCCC--CAGAGG--------AGGGTCATCCTTTGACTTTG-CTGCTGC-----------TGTGTA--CA------------------CTTGATGGG-GTCCTC-ACC--AGCCACAGTGACCCAGGATACAGCTATG--ACCCT-GGG--CATCTACCAATTTCA-----------------CCC-CC----AAAGAG----aaaaaaat--a------aaaataa-aaaa---------ataaataaataGTGTTCCTGGAAA-TGAAAAAAAAAAAA-TTTA--TTTTGTGTTTAAACATCATTCCCC-TGCTCTTGAAAACATG-----------TATTT-TCCCCCTCCCCC-----TAAAACCTTCCCACTTTGAGACAAATTAAT------------------------GTTTGTCTGCTTTTCCAATCCTGGGTCTAGTG-TTCTCTGAACTGGTGTGAGACAGG-TAAAGATCAAAGC--CACACACA-CCCCGTCCTTTATGAGATGAGGGTTTGTTCAGTTCAATTTCACATTTAAATTTCAC-TGTCATTGGAACAAATTT-GGAGATCTTTAACTAGTTAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACtaaaaatagatt----tatatatatatattttttatCCCTCCCT--------------------------------------------TTTAATTCCCCCCACCGTTTTCCCATCATCCCACCCCT-CCCCCCT-------------------------------CCCCCCACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACATCTTGGGTCTTTC-TTTCCTGTGGTGTCACCGGTTTGAGTGTGATGTGAGAACTTAG-GAAGGAAGTGCTGGCATGGGCAGGCAC------G-CGGG---------GC-----AGGGCA-----GGG--TGTGGCTGCACGGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACAGACACTGAGGGCTAGGA-GCCTCCACAGGATC-CACCACC-AACAGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8854677 1475 - 16357246 GCCGCCTCTG--G---AGAACCAGAGCT--ACCC--TATGGGGGCTAGAATGGGAGAAGGAAGAGACGCA--TTCACTTTAAATTAAACAAAAG-AAGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattttttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTTacaaaacaaaacaaaacaacacaacacaaCA----TAAAGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTACAAAAGTGAAAGC-------AAAAAGGGTTAAATGGGTGTTCCTGGACAGCTTA----ACCCACACTGATCA-------CA----ACGACAGTCCCTCCTC----ATCCCTGCCTACAGCTCACATTGCCAGCTCCGGCGGCACAGGCCTGGGCCTCCTCCTATCCCCAAGCGTTCCTGTGGGTC------AGGGCA-CAGCTGCCTGGAATGCACTGAGGACAGGGGGCCC--CAGAGG--------AGGGTTATCCTTTGACTTTG-CTGCTGC-----------TGTGTA--CA------------------CTTGATGGGAGTCCTC-ACC--AGCCACAGTGACCCAGGACACAGCTATG--ACCTC-GGG--CATCTACCAATTTCA-----------------CCC-CC----AAAAAG---aaaaaaaat--a------aagaata-aaaa---------ataaataaataGTGTTTCTGGAAA-TG----AAAAAAAA-TTTA-TTTTTGTCTTTAAACATCATTCCCC-CTCTCTTGAAAACATG-----------TA-TT-TCCCCCTCCCCC-----TAAAACCTTCCCACTTTGAGACAAATTAATGACAAAAAGGATGGTTTTGGTGTGGTTTGTCTGCTTTTCCAATCCTGGGTCTAGTG-TTCTCTAAACTGGTGTGAGACAGG-TAAAGATCAAAGC--CACACACA-CCCCGTCCTTTATGAGATGAGGGTTTGTTCAGTTCAATTTCACATTTAAATTTCAC-TGTCATTGGAACAAATTT-GGAGATCTTTAACTAGTTAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACtaaaaatagatt----tatatatatatattttttatCCCTCCCT--------------------------------------------TTTAATTCCCCCCACCATTTCCCCATCATCCCACCCCT-CCCCCCT-------------------------------CCCCCCACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACATCTTGGGTCTTTC-TTTCCTGTGGTGTCACCGGTTTGAGTGTGATGTGAGAACTT-----AGGAAGTGCTGGCATGGGCAGGCAC------G-CGGG---------GCGGGGTGGGGCA-----GGG--TGTGGCTGCACGGTAGGACAATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACAGACACTGAGGGCCAGGA-GCCTCCACAGGGTC-CACCATC-AACAGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1337405 1478 - 1807191 GCCACCTCTG--G---AGAACCAGAGCT--ACCC--TTTGGGGGCTAGAATGGGAGAAGGAAGAGACGCA--TTCACTTTAAATTAAACAAAAG-AAGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattttttg--attttttttgttt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGTCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA--TTTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTTacaaaacaaaacaaaataacacaacacaaca----taaAGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTACAAAAATGAAAGC-------AAAAAGGGTTAAATGGGTGTTCCTGGTCAGTTTA----ACCCACACTGATCA-------CA----ATGACAGTCCCTCCCC----GTCCCTGCCTACAGCTCACATTGCCAGCTCGGGCGACACAGGCCTGGGCCTCCTCCCATCCCCAAGCATTCCTGTAGGTC------AGGGCA-CAGCTGCCTGGAATGCGCTGAGGACAGGGGGCCC--CAGAGG--------AGGGTCATCCTTTGACTTTG-CTGCTGC-----------TGTGTA--CA------------------CTTGATGGA-GTCCTCAACC--AGCCACAGTGACCCAGGACACAGCTATG--ACCTC-GGG--CATCTACCAATTTCA-----------------CCC-CC----aaaaat----aaaaaaat--a------aaaataa-aaaa---------ataaataaataGTGTTTCTGGAAA-TG----AAAAAAAA-TTTA-TTTTTGTGTTTAAACATCATTCCCC-TGCTCTTGAAAACATG-----------TA-TT-TCCCCCTCCCCC-----TAAAACCTTCCCACTTTGAGACAAATTAATGAC-AAAAGGATGGTTTTGGTGTGGTTTGTCTGCTTTTCCAATCCTGGGTCTAGTG-TTCTCTGAACTGATGTGAGACAGG-TAAAGATCAAAGC--CACACACA-CCCCGTCCTTTATGAGATGAGGGTTTGTTCAGTTCAATTTCACATTTAAATTTCAC-TGTCATTGGAACAAATTT-GGAGATCTTTAACTAGTTAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTTTTTATCCCTCCCT--------------------------------------------TTTAATTCCCCCCACCGTTTCCCCATCATCCCACCCCT-CCCCCCT-------------------------------CCCCCCACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACATCTTGGGTCTTTC-TTTCCTGTGGTGTCACCGGTTTGAGTGTGATGTGAGAACTTAG-GAAGGAAGTGCTGGCATGGGCAGGCAC------g-cggg---------gcggggcggggca-----ggg--tgtggcTGCACAGTAGGACGATTTCCATTCCATCACGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACAGACACTGAGGGCCAGGA-GCCTCCCCAGGGTC-CACCACC-AACAGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 15942 1457 + 5963231 GCTGCCTCTG--G---AGAACCAGAGCT--ACCC--TTTGGGGGCTAGAATGGGAGAAGGAAGAGACGCA--TTCACTTTAAATTAAACAAAAG-AAGGAAACAAGGTTAAAATGAACGtttattatttttttgattttttt--gattttt---ttt--ttt-g-ttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCATAACAAGA---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTTacaaaacaaaacaaaacaacacaacacaaca----taaaGAATCACGTAGCATGGGGCTGCCTATCTGACAGGTCCTCTTTTCCTTTACAAAAATGAAAGCAAAAAGAAAAAAGGGTTAAATGGGTGTTCCTGGTCAGCTTA----ACCCACACTGATCA-------CA----ACGACAGTCCCTCCCC----GTCCCTGCCTACAGCTCACATTGCCAGCTCCAGCAGCACAGGCCTGGGACTCCTCCTATCCCCAAGGGTTCCTGTGAGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGGGGACAGGGGGCCC--CAGAGG--------AGGGTCATCCTTTGACTTTG-CTGCTGT-----------TACGTA--CA------------------CTTGATGGG-GTCCTC-ACC--AGCCACAGTGACCCA--ACACAGCTATG--ACCTC-GGG--CATCTACCAATTTCA-----------------CCC-CC----aaaaag----aaaaacat--a------aaaataa-aaaa---------ataaataaaTAGTGTTTCTGGAAATTG----AAAAAAAA-TTTA-TTTTTGTGTTTAAACATCATTCCCC-TGCTCTTGAAAACATG-----------TA-TT-TCCCCCTCCCCC-----TAAAACCTTCCCACTTTGAGACAAATTAATGAC-AAAAGGATGGTTTTGGTGTGGTTTGTCTGCTTTTCCAATCCTGGGTC-----------------------GGACAGG-CAAAGATCAAAGC--CACACACA-CCTTGTCCTTTATGAGATGAGGGTTTGTTCAGTTCAATTTCACATTTAAATTTCAC-TGTCATTGGAACAAATTT-GGAGATCTTTAACTAGTTAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTTTTTATCCCTCCCT--------------------------------------------TTTAATTCCCCCCACCGTTTCCCCATCATCCCACCCCT-CCCCCCT-------------------------------CCCCCCACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACATCTTGGGTCTTTC-TTTCCTGTGGTGTCACCGGTTTGAGTGTGATGTGAGAACTTAG-GAAGGAAGTGCTGGCATGGGCAGGCAC------G-TGGG---------GCGGGGCGGGGCA-----GGG--TGTGGCTGCACGGTAGGACGATTTCCATTCCATCATGAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGGAAGACAAGGGACAGACACTGAGGGCCAGGA-GCCTCCACAGGGTC-CACCACC-AACAGC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5707147 1480 + 108171978 GCCTCCTCTG--C---AGCACCAAAGAC--ACCT--TTTGAAAGCCAGACTGAGAGAAAGAAGAGACACA--TTCAGTTTATATTACACAAAAA--AGGAAACAAGGTTAAAATGAA-Gtttattatttttttgattttttg-------------tt--ttt-gtttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCTTAAGA--T---TTTTTTTGTACTTTTTTCTTCTTTTTCTAAAACTCAGATATTTAAAAATTATACAATTT-----acaaaacaaaacacaacaaaacaaaa----taaaGAATCATGTAGCATGGGGCTGCCTATGTGACAGGCCCCCTTTTCCTTTATAAAAATAAAAGCAAAAAGG--AAAGAGTTAAGTGGGTGTTCCTGGTCAGCTTA----ACCCACACTGATCA-------CA----CTGACAGTCCCTCCCT----GTCACTGCCCACAGCTCATACTGCCTATGCTGGCAGCAGAGGCCTGGGCCACCTCCTATCCCTGTGGGTCCCCAT-GGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACAGAAGGCCC--CACATG--------CGGGTCATTCCTTGATTTTGCCTGCTGCTGCAGGGCCACTATGTA--CACTT------GGTGGGACCCT---TGGG-GTCCTT-CCC--AGCCATAGTGACCCAGGACATAGCTATGACACCTT-AGG--CACCTACCAATTTCA-----------------CCCTCC----AAAAAG----ATAAAAAT--T------AAAAAA---------------AATAATAAATAGTGTTTCTGGAAA-TG----AAAAGAAT--TTATTTTTTGTGTTTAGACATCATTCCCC-CACTCTTGAAAACATGAACTGTCCCCACT-T-----CCCTCCCCC-----TAAAACCTTCCCATTTTTAGACAAATTAATGAC-AAAAGGATGGTTCAGGTGTGGTTTGTCTGCTCTTTCAATCCCGGGTCTAGTG-TTCTCTGAATTGGTGTGCGACAGACTAAAGATCAAAGC--CACACACA-CCCTGTCCTTTATGAGATGAGGGTTTGTTCACTTCAATTTCACATTTAATTTTCAC-TGTCATTGG---AAATTT-GGAGTTCCTTAACTAGATAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAAAAATAGATT----TATATATATATATTT-TTATCCCTCCCT--------------------------------------------TTTAATTccccccaccc-gtccccctccacccacccct-cccccct-------------------------------ccccccACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACTTCTT-GGTCTTTC-TTTCCTGTGGTGTCACTGGTTTGAATGTGATGTGAGAGCTTAG-GAAGGAAGTGCTggcatgggtgggcac---------------------gcagggcggggca-----ggg--tggggcTGCA-GGTAGGAGCGT-----TTCCAACATGAGTGTCCACACCACCTTCTTTCTCATCTCCACAGTCTCACCTGGAAGACAAGGAACAGACACTGAGGGCCAGGA-ACCTCCACATAGTC-TGCTGCC-AACAGC i micMur3.chr7 C 0 I 26 s proCoq1.NW_012136747v1 5071086 1443 - 6317780 GCCTCCTCTG--C---AGCACCAAAGCC--ACCT--TTTGGAAGCCAGACTGGGAGAAAGAAGAGACGCA--TTCAGTTTACATTACACAAAAA--AGGAAACAAGGTTAAAATGAA-Gtttattatttttttgatttt----------------tt--tgt-ttttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCCATGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCTTAAGA--T---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----ACAA----------AACAAAACAACA----TAAAGAATCATGTAGCATGGGGCTGCCTATGTGACAGGCCCCCTTTTCCTTTATAAAAATAAAAGCAAAAAGGAAAAAGAGTTAAGTGGGTATTCCTGGTCAGCTTA----ACCCACACTGATCA-------CA----CTGACAGTCCCTCCCT----GTCACTGCCCACAGCTCATACTGCCTATGCTGCCAGCAGAGGCCTGGGCTGCCTCCTATCCCTGTGGTTCCCCGT-GGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACAGAGGGCCC--CACAGG--------CGGGTCATCCCTTGATTTTGCCTGCTGCTGCAAGGCCACTGTGTA--CACTT------GGTGGGACCCT---TTGG-GTCCTC-CCC--TACCACAGTAACCCAGGACATAGCTATG--ACCTC-AGG--CATCTGCCAATTTCA-----------------CCC-CC----aaaaag----ataaaaaa--t------taaaaa---------------aaaaataaaTAGTGTTTCTGGAAA-CG----AAAAAAAT--TTATTTTTTGTGTTTAGACATCATTCCCC-CACTCTTGAAAACACAAACCATCCCCACT-T-----CCCTCCGCC-----TAAAACCTTCCCATTTTGA-----------GAC-AAAAGGATGGTTCAGCTGTGGTTTGTCT-CTCTTTCAATCCTGGGTCTAGTG-T--TCTGAATTGGTGTGCAACAGGCTAAAGATCAAAGC--CACACACA-CCCTGTCCTTTATGAGATGAGGGTTTGTTCACTTCAATTTCACATTTAATTTTCAT-TGTCATTGG---AAATTT-GGAGTTCTTTAACTAGATAATTTTAAAATAGAATCAAAAGGGATAGTGCACCTTTCATTTAAACAAAGTCTTTCCAGACTAA-----------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----TGACGTCTTGGGTCTTTC-TTTCCTGTGGTGTCACTGGTTTGAATGTGATGTGAGAGCTTAG-GAAGGAAGTGCTGGCATGGGCGGGCAC---------------------GTGGGGCGGGGCA-----GGG--TGGGGCTGCG-GGTAGGACCGT-----TTCCAACATGAGTGTC--CACCACCTTCTTTCTCATCTCCACAGTCTCACCTGGAAGACAAGGAACAGACACTGAGGGCCAGGA-ACATCCACGTGGTC-TGCTGCC-AACAGC i proCoq1.NW_012136747v1 I 122 C 0 s otoGar3.GL873526 36282289 1491 - 42659167 GCCTCCTCTG--C---AGAACCAAAG-C--ACCT--TCTAG-GGTTGGAATGGGAGAATGAAGAGACACA--TTCACTTTATATTACACAAAAA--AGGAAACAAGGTTAAAATGAA-Gtttattatttttttgatttttt--------------tt--ttt-gtttttttaaataaaaCTGTTTGTGAAACAGCTAGTTTATCCCCATGGCAGAGTGACCCC-GAAAGATGCACT-AACCCCTTCTTAAGGCCTTAACAAGA---TTTTTTTGTACTTTTT--TCTTTTTTTTAGAACTCAGATATTTAAAAATTATACATTTT-----ACAAAACAAAACAATACAACACAACA----TAAAGAATCATGTAGCACAGGGCTGCCTATCTGACAGACCTCCTTTTCCTTTATAAAAATAAAAGCAAAAAGA--AAAGAGTTAAGTGAGTGCTCCTCGTCCGTTTA----ATGCACACTGATCA-------CA----CCGACAATCCCTCCCT----GTCACTGCCCACAGCTCTCACTGCCTGTGCTGGCAGCAGAGGCCTGGGCTTCCTCCTGTCCCTGTGGGTCCCTGT-GGTC------AGGGCA-CAGCTGCCTGGAATGTGCTGAGGACAAAGGGCCC--AGAGGGCCCCAGCACAGGTCACCCCTTAATTCTGCCTGCTGCTCCAAGGTCGTTGTGTA--CACTTGGGGCGGGGGGGGGGCT---TCAG-ATCCTT-TCC--AACTACAGGGACCCAGGACATAGTTACA--ACCTC-AGA--CATCTGACAGTTTTA-----------------CCCCCCACaaaaaaag----ataaaaat--t--------aaaa---------------aaaaataaataGTGTTTCTGGAAA-TG----AAA--AAT--TTA-TTTTTGTGTTTAGACATCATTCCCC-CACTCTTGAAAACATGGACCATTCCCTCT-T-----CCCTCCCCC-----CAAAACCTTCCCACTTGGAGACAAATTAATGAC-AAAAGGATGGTTCAGGTGTGGTTTGCCTGCTCTTTCAATCCTGGGTCTAGTG-TTCTC-GAATTGGTGAGCAACAGGCTGAAGATCAAAGC--CACACACA-CCCTGTCCTTCATGAGATGAGGGTTTGTTCACTTCAATTTCACATTTGATTTTCAC-TGTCATTGGAACAAATTT-GGAATTCTTTAACTAGATAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACtaaaaatagatttatatatatatatatattt-ttatCCCTCCCT--------------------------------------------TTTAATT-CCCCCACCC-ATCCCCATCCTCCCACACCT-CCCCCCT-------------------------------CCCCCCACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTCGACAACGACATCTTGGGTCTTTC-TTTCCTGTGGTGTCACTGGTTTGAGTGTGATGTGAGAGCTTAG-GAA-GAAGTGCTGGCATGAGTGGGCAC---------------------GTGGGGCGGGGCA-----GGG--CGGGGCTGCA-GGTAGGACCGT-----TTCCAACTCAGGTGTC--CACCATC----TTTTCATCTCCACAGTCTCACCTGGAAGACAAAGAACAGGCACTAAGGGCCAGGA-ACTGCCACATGCTC-TGCCGCC-AACAGC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82808355 1487 + 104043685 GCCCCCTGGG--GAATAGAGCCAAAGAC--TTCC--TGGGAGGGCCATTCT-GGAGAAGGAAGAGACACA--TTCACTTAAGAGTAAATGAAAA--AGGACACAAGGTTAAAATGAA-GTTTATTACGGttttgttttttttttaatttttttgatt--ttt-gtttttttAAATAAAACTGTTTGTAAAACAGCTATTTTATCCCCACGGCAGAGTGACCCCTGAAAGATGCACA-TATCCCTTCTTAAGGCCTTAACAAGA--TTTTTTTTGTACTTTT---TTCTTTTTTTAAAACTC--ATATTTAAAAATTATACAATTT-----ACAAATCAAA-----ACAATACAACA----TAAAGAATCACATAGCAT-GGGCAACATATCTGACAAGTCCCCTTTCCACTCTAAAAAATAAAAGCAATAG--AGAAGTGTTAAAGTGGCTGGCTCTGGTCAGCTTAGTGCACCCACATGGCTCA-------CG----CCACAGTTCTCTCCTA----GACTCTGCTT----------------GTTTCAGCAGCAGAGGCCTGGGCCTCC-ATGGTTTCCATGGATG-CTGTGGGTCCCCACAAGGGTACCAACTACATGGAATGTGCCAAGGAAAGAGGGCGC--CAGAGA--------TAAGCCATTCCTTGGGTACACCTACTGC-----------TGTGGGGCTA------------------CT---CTAC-ATACTT-GGTGGGGCCACAGTGATCCAGGATACAGCCATG--ATGTTGGGG--CATCTGCCAATTTCACCACTACCACCCCACCCCCC-GC----aaaaaa----aaaaaaaa--aggagggaaaaaat-aaaa---------ataaataaaTAGTGTTTCTGGAAA--G----AAAAAAAT--TTA---TTTGTGTTTAAACATCATTCCCCACACTTTTGAAAAT---GACCATCCCCATT-CTGTCCCCCTCCCTC--------AAACTTCCC-CTGTGAGACAGATT-CTAAC-CAAGGGAAGGGT-GGTTGTCATTTGTCTACTCTTTCAGTCCAGGGTCTAGTG-TTCACTGAAT---TGTGAGACAGGCTAAAGATCAAAGC------CACA-CCCCATCCTTTATGAGATGA--GTTTGTTCAGTTCAATTTCACATTTAAATTTCAT-TGTCATTGGAACAAATTT-TGAA----TTAACTAGATAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACtaaaaatagatt----tatatatatatattttttatCCCTCCCT--------------------------------------------TTTAACTCC-----CCGTTTCCCCATCAGCCCTCCCCT-CCCCCCT--------------------------------CCCCCACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACATCTTGTATCTTTCTTTTCCTGTGGTGTCACCAGTTTGAGTGTGATGTGAGAACATAG-GAAGGAAGTGCTggcatgggcaggcgcagcgcag-cggggggtgcagggcagggcagggcagagtgggg--TGTGGTTGCACAGCAGGAGGAT-TCCATTCCGTCACGTGTGTC--CTCCACC----TTCTCATCTCCACAGTCTCACCTGGAAAACAAACAGTAGGCACTGGGTGCTTCCA-AGTTCCATATGGTCTCAGCAC-------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46080676 1406 - 69331447 GGCTGCTCTGCAG---GGGGGCAAAGCC--ACC---TTCGGGGGCTGC----GGAGGATGAAGAGACGCGCCTTTGCTTTGTATTAAACAAAAAAAAGGAAACAAGGTTAAAATGAA-Gtttatt---------attttttg--attttttttgttt--ttt---------aaataaaaCTGTTTGTGAAACAGCTATTTTATCCCCACGGCAGAGTGACCCCTGAAAGATGCACT-AACCCCTTCTTAAGGCCTTAACAAGAATTTTTTTTTGTACTTTTTTCTTCTTTTTTTAAAACTCAGATATTTAAAAATTATACAATTT-----acaaaacaaaacaaaacaatacaaCA----TAAAGAATCATGTAGCGTGGGGCTGCTCACCGGACAGGCCCCCTTT-CCTTTATAAAAATGAAAGCAAAA---AAAAAGGGTTAACTGGGTATTCCTGGTCAGTGTA----ACCCACACTGGTCACGCTCGGCA----GACACAGTCCCTCCCC-TGTGTCGATTCCTACAGCTTAGACTTCCTGTCCTGA------------------CCTTCTGTCC------------GGGGGGC------AGGGCT-CAGCGGCCAGGAGCGCG----------------C--CAGACG--------TGGGCCACCCC-CAACCCTG-C--CTGC-----------CGCGCG--TGCTT------AGTGGGGCGCT---CGAG-GTTCTC-ACC--GGCCACAGTGATCCAGGACATAGCTGTG--ACCTT-GGG-ACATCTGCCAATTTCA-----------------CCC-CC----CAAAAAGataaaaaattt--a------aaaata---------------ataaataaataGTGTTTCTGGAAA-TG----AAAAAAAT--TTA-TTTTTGTGTTTAAACATCATTCCCC-CACTCTTGAAAACATGGACCATCCCCACA-TC-ACCCTCCCCCCCGGCCCCCAAACCTTCCCACTTTGAGACAAATTAATGAC--AAAGGATGGTTCTGGTGTGGTTTGTCTGC--TTTCAGCCCTGGGTCTGCAG-CTCTCTGAACCGGTGTGAGGCAGGCTAAGGATCAAAGC------CACA-CCCCGTCCTTTATGAGACCAGCTT-------GTTCAATTTCACACTTAAATTTCAC-TGTTATTGGAACAAATTT-GGAGTTCTTTAACTAGAGAATTTTAAAATAGAATCAAAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACtaaaaatagatt----tatatatatatattt-ttatCCCACCCT--------------------------------------------TTCACCCCCCC--------TTCCCATCAGCCCACCCCT-CCCCCCT-------------------------------CCCCCCACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCATTC-----CAACTTCTTGGGTCTTTC-TTTCCTGTGGTGTCAC-GGTTTGGGTGTGATGTAAGGACTTAG-GGAGGAGGTGCTg--------------------g-cggg---------gcggggt-gggcg-----ggg--cggggcCGCACAGCAGGACGGTTCC--TTCCATCGCGAGTGTC--CACCACC-----TCTCATCTCCACAGTCTCACCTGGAAGACA--GAAGCGATACTGGGTGCTGGGA-ACCTCCGCGCAGCCCCAGAGCC-AACAGC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 52894 1443 + 1056298 -------------------------GCTTGACCT--GCGGAAGGCTGGAATGGCAAGAGGAAGAGACGCA--TTCACTTTACAAGAAACAAGAA--AGGAAACAAGGTTAAAATGAA-GTTTATTATTTTTTGGACtttttt--tttttttttttttgattt-ttttttttAAATAAAACTGTTTGTGAAACAGCTATTTTATCCCGATGGCAGAGTGACCCCTGAAAGATGCACTAAACCCCTTCTTAAGGCCTTAAGA--T---TTTTTTTGTACTTTT---TTCTTTTTTTAAAACTTGGatatttaaaaattatacaattt-----ataaaaCAAAACAACACAACACAACATCCCTAAAGAATCACGTACCATGGGGCTGCTCAACTGACAGGCCCCCTTTTCTTTTATAAAAGTGAAAACAAAGAGAAAAAAGGGCTAACTGAGTGTTCCTGGCCAGCTGA----GCACACACTGGTCA-------CACGTTGCCGCAGGTCCTCCTCACCTGTCAACTCCTGTAACTTAACCCTCCTGTCCCAACAGCAGAGGCTGGGACCGCCCCCCAGCCCCACG----------GGCC------AGGGCA-CAGCTGCCTGGAATGTGCCAAGGAT----GGCCCATCTGAGG--------GGAGTCATCTCTTGGTCTTG-C-----C-------------------TG------------------CT--------GGCCAC-AC---AGCCACTGTGACCCAGGACACAGCTATG--ACCTT-GGGGAAACCCACCAATTTCA-----------------CGC-CA----AAAAAAGA--Gaaaaatt--a------aaaaaaataaaa---------ataaataaataGTGTTTCTGGAAA-TG----AAAAAAAA-TTTA-TTTTTGTGTTTAAACATCATTCCTC-GACTCTTGAAAACATGGACCTTACCCATT-TC-----CCTCCCCC-----CAAAACCTTCCCACTTCGAGACAAATTAATGAC-TAAAGGATGGTTTTGGTGTGGTTTGTCTGCTCTTTCAATCCTGGGTCTAGTG-TTCTCTGAATTGGTGTGAAACAGGCTAAGGATCAAAGC--CACACACACCCCCATCCTTTATGAGATGA--GTTTGTTCAATTCAATTTCACATTTAAATTTCAC-TGTCATTGGAACAAATTT-GGAG----TTAACTAGATAATTTTAAAATAGAATC-AAAGGGATAGCGCACCTTTCATTTAAACAAAGTCTTTCCAGACtaaaaatagatt----tatatatatatattt-ttatCCCTCCCT--------------------------------------------TTAA--TTCCCCCACCCTTTCCCCATGATCCC-TCCCT-TCCCCCT-------------------------------CCCCCCACATTGTCACTATGGAGATTGTGTCCATGGAAACAGCCACTC-----CAACTTCTTGAGTC-----TTTCCTGTGATGTCACCGGTCTGGGTGTGATGTAAGAACTTAG-GAAGGAAGTGCTGGCATGGGCAGGCAC------GTTGGG---------GGGGGGCAGGGCG-----GGGGTTGTGGCTGCGCTGTA-GACAATTTCCATGTCATCACTAGTGTC--CACCACC----TTCTCATCTCCACAGTCTCACCTGAAAGACAAGAGAACAGAGCTGACTGCTGAGACGACTCTACTGGCTC-TAAAAGC-CACAAC i dasNov3.JH570235 C 0 C 0 a score=280642.000000 s hg38.chr22_GL383582v2_alt 71610 24 + 162811 CGCTGTTCCGTGGTACCCCTGGGA s panTro5.chr22 28851959 24 + 37823149 CGCTGTTCCGTGGTACCCCTGGGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41126286 24 + 50109623 CGCTGTTCCGTGGTACCCCTGGGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3148561 24 + 4464012 CGCTGTTCCGTGGTACCCCTGGGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645081 24 - 115148730 CGCTGTTCCGTGGTACCCCTGGGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84260400 24 + 92844088 CGCTGTTCCATGGTACCCCTGGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87605405 24 - 96509753 CGCTGTTCCATGGTACCCCTGGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7097120 24 - 13098629 CGCTGTTCCATGGTACCCCTGGGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4063658 24 - 4483953 CGCTGTTCCATGGTACCCCTGGGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24694429 24 + 33263144 CGCTGTTCCATGGTACCCCTGGGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13968608 24 - 14338769 CGCTGTTCCATGGTACCCCTGGGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 911930 24 + 1946073 CGCTGTTCCATGGTACCCCTGGGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1941357 24 - 2117846 GTCTGTTCTGTGATACCCCTGGGA i calJac3.chrUn_GL286373 C 0 I 4 s saiBol1.JH378157 8856152 24 - 16357246 CTCTGTTCTGTGATACCCCTGGGA i saiBol1.JH378157 C 0 I 4 s cebCap1.NW_016107750v1 1338883 24 - 1807191 CTCTGTTCTGTGATACCCCTGGGA i cebCap1.NW_016107750v1 C 0 I 4 s aotNan1.NW_018512383v1 17399 24 + 5963231 CTCTGTTCTGTGATACCCCTGGGA i aotNan1.NW_018512383v1 C 0 I 4 s proCoq1.NW_012136747v1 5072529 22 - 6317780 --TCATTCCGTCGTGCCCCTGGGA i proCoq1.NW_012136747v1 C 0 I 4 s otoGar3.GL873526 36283780 22 - 42659167 --CCACTCCACGGCACCCCTGGGA i otoGar3.GL873526 C 0 I 8 s mm10.chr15 82809842 19 + 104043685 AGCTGTT-----GTAGCAATGGGA i mm10.chr15 C 0 I 7 s canFam3.chr10 46082082 14 - 69331447 CCCTGCTCTGGGGG---------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 54337 20 + 1056298 CCCTCCTCCACGGTCATCCC---- i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5708627 26 + 108171978 I a score=1894503.000000 s hg38.chr22_GL383582v2_alt 71634 127 + 162811 GCTTTCAGCAGGGAGCCTGCACTCACGCCCCTCTGCAGATGTGCTGCTGAT-ATGGGACACACCCGAGA-CCAATGCCAGGGCCACTGT--GTGGCTCTGGATCTGGAATGTGATTAAAGGCAGCAATGAC s panTro5.chr22 28851983 127 + 37823149 GCTTTCAGCAGGGAGCCTGCACTCACACCCCTCTGCAGATGTGCTGCTGAT-ATGGGACACACCCGAGA-CCAATGCCAGGGCCACTGT--GTGGCTCTGGATCTGGAATGTGATTAAAGGCAGCAATGAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41126310 128 + 50109623 GCTTTCAGCAGGGAGCCTGCACTCACACCCCTCTGCAGATGTGCTGCTGATAATGGGACACACCCGAGA-CCAATGCCAGGGCCACTGT--GTGGCTCTGGATCTGGAATGTGATTAAAGGCAGCAATGAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3148585 127 + 4464012 GCTTTCAGCAGGGAGCCTGCACTCAGACTCCTCTGCAGATGTGCTGCTGAT-ATGGGACACACCCGAGA-CCAATGCCAGGGCCACTGT--GTGGCTCTGGATCTGGAATGTGATTAAAGGCAGCAATGAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645105 127 - 115148730 GCTTTCAGCAGGGAGCCTGCACTCAGACCCCTCTGTAGATGTGCTGCTGAT-ATGGGACACACCCGAGA-CCAATGCCAGGGCCACTGT--GTGGCTCTGGATCTGCAATGTGATTAAAGGCAGCAATGAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84260424 127 + 92844088 GCTTTCAGTAGGAAGCCTGCACTCAGACCCCTCTGTAGATGTGCTGCTGGT-GTGGGACACACCCGAGA-CCAATGCTGGGGCCACTGT--GTGGCTTTGGATCTGGAATGTGATTAAAGGCAGCAATGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87605429 127 - 96509753 CCTTTCAGTAGGAAGCCTGCACTCAGACCCCTCTGTAGATGTGCTGCTGGT-GTGGGACACACCCGAGA-CCAATGCTGGGGCCACTGT--GTGGCTTTGGATCTGGAATGTGATTAAAGGCAGCAATGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7097144 127 - 13098629 GCTTTCAGTAGGAAGCCTGCACTCAGACCCCTCTGTAGATGTGCTGCTGGT-GTGGGACACACCCGAGA-CCAATGCTGGGGCCACTGT--GTGGCTTTGGATCTGGAATGTGATTAAAGGCAGCAATGAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4063682 127 - 4483953 GCTTTCAGTAGGAAGCCTGCACTCAGACCCCTCTGTAGATGTGCTGCTGGT-GTGGGACACACCCGAGA-CCAATGCTGGGGCCACTGT--GTGGCTTTGGATCTGGAATGTGATTAAAGGCAGCAATGAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24694453 127 + 33263144 GCTTTCAGTAGGAAGCCTGCACTCAGACCCCTCTGTAGATGTGCTGCTGGT-GTGGGACACACCTGAGA-CCAATGCCAGGGCCACTGT--GTGGCTTTGGATCTGGAATGTGATTAAAGGCAGCAATGAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13968632 127 - 14338769 GCTTTCAGTAGGAAGCCTGCACTCAGACCCCTCTGTAGATGTGCTGCTGGT-GTGGGACACACCCGAGA-CCAATGCTGGGGCCACTGT--ATGGCTTTGGATCTGGAATGTGATTAAAGGCAGCAATGAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 911954 128 + 1946073 GCTTTCAGTAGGGAGCCTACACTCAGACCCCTCTGTAGATGTGCTGCTGGT-GTGGGACACACCCGAGACCCAATGCCGGGGCCACTGT--GTGGCTTTGGATCTGGAATGTGATTAAAGGCAGCAATGAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1941385 127 - 2117846 GCTTTCAGCAGGTATGCTGCACTCCGACCCCTCTGTAGATGTGCTGCTGCT-GTAGGACACACCCGAAA-CCAATGCTGGAGCCAATGT--GTGGCTCTGGATCTGGAATGTGATTAAAGGCAGCAATGAC i calJac3.chrUn_GL286373 I 4 C 0 s saiBol1.JH378157 8856180 127 - 16357246 GCTTTCAGCAGGGATCCTGCACTCAGACCCCTCTGTAGATGTGCTGCTGCT-GTAGGACACACCTGAAA-CCAATGCTGGAGCCGCTGT--ATAGCTCTGGATCTGGAATGTGATTAAAGGCAGCAATGAC i saiBol1.JH378157 I 4 C 0 s cebCap1.NW_016107750v1 1338911 126 - 1807191 GCTTTCAGCAGGGATCCTGCACTCAGACCCCTCTGTAGATGTGCTGCTGCT-GTAGGACACACC-GAAA-CCAATGCTGGAGCTGCTGT--GTGGCTCTGGATCTGGAATGGGATTAAAGGCAGCAATGAC i cebCap1.NW_016107750v1 I 4 C 0 s aotNan1.NW_018512383v1 17427 127 + 5963231 GCTTTCAGCAGGGATCCTGCACTCAGACCCCTCTGTAGATGTGCTGCTGCT-GTAGGACACACCCGAAA-CCAATGCTGGAGCTGCTGT--GTGGCTCTGGATCTGGAATGTGATTAAAGGCAGCAATGAC i aotNan1.NW_018512383v1 I 4 C 0 s micMur3.chr7 5708653 127 + 108171978 GCTTTCGGCAGGGAACTGGAGCTCAGACCCCTCTGTAGATGTGCTATTGAT-GAGGGACACATCCAAGA-CCAATGTTGTTGCCACTAT--GTGGCTTTGCACCTAGAACGTGGTTAAAGGCAGCAATGAC i micMur3.chr7 I 26 C 0 s proCoq1.NW_012136747v1 5072555 127 - 6317780 GCTTTCAGCAGGGACCTGGAGCTCAGACCCCTGTGTAGATGAGCTGTTGAT-GAGGGACACATCCAAGA-CCAGTGTTGGTGCCACCAC--ATGGCTTTGGACCTAGAACGTGGTTAAAGGCAACAGTTAC i proCoq1.NW_012136747v1 I 4 C 0 s otoGar3.GL873526 36283810 125 - 42659167 GCTTTCAGCAGGGACCCTGCTCTCAGA-CCCTCTCTGGATGTGCTGCTGAG-GAGGGACACGT-GAAAA-CAAATGCTGGTGCCACCAT--GTGGCTTTGGACCTGGAACGTGTCTAAAGGCAGCAATGAC i otoGar3.GL873526 I 8 C 0 s mm10.chr15 82809868 121 + 104043685 GCTTTCAACAGGGATCTTATACTCAGACCTTTCTGTAGATG-GCTGCTGAT-TTTGAACACATTCAAGC-TCAATGCCTCCACTATCTT--GTGGCTTTGGACCCAC----TGGTT-AAGGCATTAGTGAT i mm10.chr15 I 7 C 0 s canFam3.chr10 46082096 113 - 69331447 ---TCTGGCAG---------CCGCAGAACCCCCTGCAAGTGTGCTATTAG--GTGGGAGACCCCCAAGA-CCTGCGGTGGAGCCGCTGT--GTGGCCCCG-ACTGGGAGCACGGTGGAGAGCAGCAGGGAC i canFam3.chr10 C 0 I 352 s dasNov3.JH570235 54357 123 + 1056298 -CACTCAGCATGGCAGC----CCTGGACGGCTCTGTAAATGTGCTGGTGAT-GAGGAAGAAGTCTGTGC-CCAACACCGGAGCCACTGTTGGTGGCTGCAG-CCTGGAACATGCTGAAAGACAGCAATGAC i dasNov3.JH570235 C 0 C 0 a score=690621.000000 s hg38.chr22_GL383582v2_alt 71761 60 + 162811 CT-AGTGG-GGGTGCTGG----GGTTGGACTC-TGAGGGCTCC-TCAGGGCATGTCTGCCTTCCTAGT- s panTro5.chr22 28852110 60 + 37823149 CC-AGTGG-GGGTGCTGG----GGTCGGACTC-TGAGGGCTCC-TCAGGGCATGTCTGCCTTCCTAGT- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41126438 60 + 50109623 CT-AGTGG-GGGTGCTGG----GGTCGGACTC-TGAGGGCTCC-TCAGGGCATGTCTGCCTTCCTAGT- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3148712 60 + 4464012 CT-AATGG-GGGTGCTGG----GGTCGGACTC-TGAGGGCTCC-TCAGGGCATGTCTGCCTTCCTAGT- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645232 60 - 115148730 CT-AGTGG-GGGTGCTGG----GGCCGGACTC-TGAGGGCTCC-TCAGGGCATGTCTGCCTTCCTAGT- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84260551 60 + 92844088 CT-AGTGG-GGGTGCTGG----GGCCAGACTT-TGAGGGCTCC-TCAGGGTATATCTGCCTTCCTAGT- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87605556 60 - 96509753 CT-AGTGG-GGGTGCTGG----GGCCAGACTT-TGAGGGCTCC-TCAGGGTATATCTGCCTTCCTAGT- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7097271 60 - 13098629 CT-AGTGG-GGGTGCTGG----GGCCAGACTT-TGAGGGCTCC-TCAGGGTATATCTGCCTTCCTAGT- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4063809 60 - 4483953 CT-AGTGG-GGGTGCTGG----GGCCAGACTT-TGAGGGCTCC-TCAGGGTATATCTGCCTTCCTAGT- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24694580 60 + 33263144 CT-AGTGG-GGGTGCTGG----GGCCAGACTT-TGAGGGCTCC-TCAGGGTATATCTGCCTTCCTAGT- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13968759 60 - 14338769 CT-AGTGG-GGGTGCTGG----GTCCAGACTT-TGAGGGCTCC-TCAGGGTATATCTGCCTTCCTAGT- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 912082 60 + 1946073 CT-AGTGG-GGGTGCTGG----GGCCGGACTT-TGAGGGCTCC-TCAGGGTATGTCTGCCTTCCTAGT- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1941512 56 - 2117846 CT-AGTGG-GGGTGCTGG----GGCTGGACTC-TGAGGCCTCC-TCAGCGCATGTCTG----CCTAGT- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8856307 56 - 16357246 CT-AGTGG-GGGTGCTGG----GGCTGGACTG-TGAGGGCTCC-TCAGCACATGTCTG----CCTAGT- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339037 56 - 1807191 CT-AGTGG-GGGTGCTGG----GACTGGACTG-TGAGGGTTCC-TCAGCGCATGTCTG----CCTAGT- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 17554 56 + 5963231 CT-AGTGG-GGGTGCTGG----GGCTGGACTC-TGAGGGCTCC-TCAGAGCATGTCTG----CCTAGT- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5708780 61 + 108171978 CTTACTTA-GGATGCTGG----GGCTGAACTC-TGAGGGCTCC-TCAGGGCATGGTTGCCTTCCCAGT- i micMur3.chr7 C 0 I 568 s proCoq1.NW_012136747v1 5072682 61 - 6317780 CTGACTTA-GGGTGCTGG----GGCTGAACTC-TGAGGGCTCC-TCAGGGCGTGTCTGCCTTCCCAGT- i proCoq1.NW_012136747v1 C 0 I 606 s otoGar3.GL873526 36283935 63 - 42659167 CTTAGTCAGGGGTGCTGG----GGCTGAACTCTTGAGGGCTCC-CCAGGGCATGTCTGCCTTCCCAGT- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82809989 23 + 104043685 AC-AAGAG-------------------------AATGGGCCTT-ACAGGG------------------- i mm10.chr15 C 0 C 0 s dasNov3.JH570235 54480 62 + 1056298 -----CGG-GTTGGCTGTACACAGCCTGACTC-CAAGTGCCCTGCCACAGCAGGTCTGCCCCGTTACAG i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46082209 352 - 69331447 I a score=146116.000000 s hg38.chr22_GL383582v2_alt 71821 12 + 162811 GCATAAAGGAAC s panTro5.chr22 28852170 12 + 37823149 GCATAAAGGAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41126498 12 + 50109623 GCATAAAGGAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3148772 12 + 4464012 GCATAAAGGAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645292 12 - 115148730 GCATAAAGGAAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84260611 12 + 92844088 GCATAAAGGAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87605616 12 - 96509753 GCATAAAGGAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7097331 12 - 13098629 GCATAAAGGAAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4063869 12 - 4483953 GCATAAAGGAAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24694640 12 + 33263144 GCATAAAGGAAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13968819 12 - 14338769 GCATAAAGGAAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 912142 12 + 1946073 GCATAAAGGAAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1941568 12 - 2117846 GCATAAAGGAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8856363 12 - 16357246 GCATAAAGGAGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339093 12 - 1807191 GCATAAAGGAGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 17610 12 + 5963231 GCATAAAGGAGC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36283998 12 - 42659167 ATGCAGAAGGAC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82810012 7 + 104043685 -----AAGGGGC i mm10.chr15 C 0 C 0 s dasNov3.JH570235 54542 12 + 1056298 GTGAAAAGGAAC i dasNov3.JH570235 C 0 I 253 e canFam3.chr10 46082209 352 - 69331447 I e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I a score=362806.000000 s hg38.chr22_GL383582v2_alt 71833 33 + 162811 CAGTACAGCAGAGAACTCCCTGACCTCAGGGCA- s panTro5.chr22 28852182 33 + 37823149 CAGGACAGCAGAGAACTCCCTGACCTCAGGGCA- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41126510 33 + 50109623 CAGGACAGCAGAGAACTCCCTGACCTCAGGGCA- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3148784 33 + 4464012 CAGGACAGCAGAGAACTCCCTGACCTCAGGGCA- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645304 33 - 115148730 CAGGACAGCAGAGAACTCCCTGACCTCAGGGCT- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84260623 33 + 92844088 CAGGACAGCAGAGAACTCCCTGACCTCAGGGCA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87605628 33 - 96509753 CAGGACAGCAGAGAACTCCCTGACCTCAGGGCA- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7097343 33 - 13098629 CAGGACAGCAGAGAACTCCCTGACCTCAGGGCA- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4063881 33 - 4483953 CAGGACAGCAGAGAACTCCCTGACCTCAGGGCA- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24694652 33 + 33263144 CAGGACAGCAGAGAACTCCCTGACCTCAGGGCA- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13968831 33 - 14338769 CAGGACAGCAGAGAACTCCCTGACCTCAGGGCA- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 912154 33 + 1946073 CAGGACAGCAGAGAACTCCCTGACCTCAGGGCA- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1941580 28 - 2117846 CAGGACAGCAGAGAACTCCCTGACCTCA------ i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8856375 28 - 16357246 CAGGACAGCAGAGAACTCCCTGACCTCA------ i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339105 33 - 1807191 CAGGACAGCAGAGAACTCCCTGACCTCAGGGGA- i cebCap1.NW_016107750v1 C 0 I 70 s aotNan1.NW_018512383v1 17622 33 + 5963231 CAGGACAGCAGAGAACTCCCTGACCTCAGGGGA- i aotNan1.NW_018512383v1 C 0 I 70 s otoGar3.GL873526 36284010 28 - 42659167 CAGG-----AGAAGATGCCCTGCACTCACGGTG- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82810019 34 + 104043685 CAAAACAGGAGAGTATTCCTTGACCTCCATGACT i mm10.chr15 C 0 C 0 e dasNov3.JH570235 54554 253 + 1056298 I e canFam3.chr10 46082209 352 - 69331447 I e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I a score=251104.000000 s hg38.chr22_GL383582v2_alt 71866 39 + 162811 GGCCCC-ACTTGTGGGGCAGCTGGTG---GGGCTTTGC--------------CAGTG s panTro5.chr22 28852215 39 + 37823149 GGCCCC-ACTTGTGGGGCAGCTGGTG---GGGTTTTGC--------------CAGTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41126543 39 + 50109623 GGCCCC-ACTTGTGGGGCAGCTGGTG---GGGTTTTGC--------------CAGTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3148817 39 + 4464012 GGCCCC-ACTTGTGGGGCAGCTGGTG---GGGTTTTGC--------------CAGTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645337 39 - 115148730 GGCCCC-ACTTGTGGGGCAGCTGGTG---GGGTTTTGC--------------CAGTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84260656 40 + 92844088 AGCCCCCAATTGTGGGGCAGCTGGTG---GGGTTTTGC--------------CAGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87605661 40 - 96509753 AGCCCCCAATTGTGGGGCAGCTGGTG---GGGTTTTGC--------------CAGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7097376 40 - 13098629 AGCCCCCAATTGTGGGGCAGCTGGTG---GGGTTTTGC--------------CAGTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4063914 40 - 4483953 AGCCCCCAATTGTGGGGCAGCTGGTG---GGGTTTTGC--------------CAGTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24694685 40 + 33263144 AGCCCCCAGTTGTGGGGCAGCTGGTG---GGGTTTTGC--------------CAGTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13968864 40 - 14338769 AGCCCCCAATTGTGGGGCAGCTGGTG---GGGTTTTGC--------------CAGTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 912187 40 + 1946073 AGCCCCGAATTGTGGGGCAGCTGGTG---GGGTTTTGC--------------CAGTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1941608 26 - 2117846 --------------GGGGAGCTCGTG---GGGCCTCAC--------------CAGCG i calJac3.chrUn_GL286373 C 0 I 49 s saiBol1.JH378157 8856403 26 - 16357246 --------------GGGGACCTGGTG---GGGCCTCAC--------------CAGCG i saiBol1.JH378157 C 0 I 49 s otoGar3.GL873526 36284038 53 - 42659167 GGCCGC-TCCAGTGCAGAAGCTCATG---GAGCTTCACCTGAGCAAGGCGAGCAGTG i otoGar3.GL873526 C 0 I 1 s mm10.chr15 82810053 39 + 104043685 GGGCCC----TGTTTGAGAGTTTGTGTATGAATCTTGC--------------CAGCA i mm10.chr15 C 0 C 0 e aotNan1.NW_018512383v1 17655 70 + 5963231 I e dasNov3.JH570235 54554 253 + 1056298 I e canFam3.chr10 46082209 352 - 69331447 I e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I e cebCap1.NW_016107750v1 1339138 70 - 1807191 I a score=527269.000000 s hg38.chr22_GL383582v2_alt 71905 54 + 162811 ----------------------------------------TCAGGACCC---CA-------------------GTTGTGACTGAA-ACCT-------------------------------ACAGTACCTGGTCAATCTGTGGAAGAA s panTro5.chr22 28852254 54 + 37823149 ----------------------------------------TCAGGACCC---CA-------------------GTTGTGACTGAA-ACCT-------------------------------ACAGTACCTGGTCAATCTGTGGAAGAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41126582 54 + 50109623 ----------------------------------------TCAGGACCC---CA-------------------GTTGTGACTGAA-ACCT-------------------------------ACAGTACCTGGTCAATCTGTGGAAGAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3148856 54 + 4464012 ----------------------------------------TCAGGACCC---CA-------------------GTTGTGACTGAA-ACCT-------------------------------ACAGTACCTGGTCAATCTGTGGAAGAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645376 54 - 115148730 ----------------------------------------TCAGGACCC---CA-------------------GCTGTGACTGAA-ACCT-------------------------------ACAGTACCTGGTCAATCTGTGGAAGAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84260696 53 + 92844088 ----------------------------------------TC-GGACCC---CA-------------------GCTGTGACTGAA-ACCT-------------------------------ACAGTACCTGGTCAATCTGTGGAAGAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87605701 53 - 96509753 ----------------------------------------TC-GGACCC---CA-------------------GCTGTGACTGAA-ACCT-------------------------------ACAGTACCTGGTCAATCTGTGGAAGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7097416 53 - 13098629 ----------------------------------------TC-GGACCC---CA-------------------GCTGTGACTGAA-ACCT-------------------------------ACAGTACCTGGTCAATCTGTGGAAGAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4063954 53 - 4483953 ----------------------------------------TC-GGACCC---CA-------------------GCTGTGACTGAA-ACCT-------------------------------ACAGTACCTGGTCAATCTGTGGAAGAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24694725 53 + 33263144 ----------------------------------------TC-GGACCC---CA-------------------GCTGTGACTGAA-ACCT-------------------------------ACAGTACCTGGTCAATCTGTGGAAGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13968904 53 - 14338769 ----------------------------------------TC-GGACCC---CA-------------------GCTGTGACTGAA-ACCT-------------------------------ACAGTACCTGGTCAATCTGTGGAAGAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 912227 53 + 1946073 ----------------------------------------TC-GGACCC---CA-------------------GCTGTGACTGAA-ACCT-------------------------------ACAGTACCTGGTCAATCTGTGGAAGAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1941683 54 - 2117846 ----------------------------------------TGAGGCATC---CA-------------------GCGCTGACTGAA-ACCT-------------------------------AGAGTACCTGGTCAATCTGTGGAAGAA i calJac3.chrUn_GL286373 I 49 C 0 s saiBol1.JH378157 8856478 54 - 16357246 ----------------------------------------TTAGGCACC---CA-------------------GCTGTGACTGAA-ACCT-------------------------------AGAGTATCTGGTCGATCTGTGGAAGAA i saiBol1.JH378157 I 49 C 0 s cebCap1.NW_016107750v1 1339208 54 - 1807191 ----------------------------------------TGAGGCACC---CA-------------------GCTGTGACTGAA-ACCT-------------------------------AGAGTACCTGGTCAATCTGTAGAAGAA i cebCap1.NW_016107750v1 I 70 C 0 s aotNan1.NW_018512383v1 17725 54 + 5963231 ----------------------------------------TGAGGCACC---CA-------------------GCTGTGACTGAA-ACCT-------------------------------AGAGTACCTGGTCAATCTGTGGAAGAA i aotNan1.NW_018512383v1 I 70 C 0 s otoGar3.GL873526 36284092 89 - 42659167 ----------------------------------------TCAGAACCCCTGCA-------------------GTTGTAGTTCAGCACCTGGGGGCAGGGCTTGGTCCTCAGAGGTGGCTGAGAGCACCCAGCTAATGCATGGAAGGA i otoGar3.GL873526 I 1 C 0 s mm10.chr15 82810092 112 + 104043685 TAGTAAGGTCTGTGGTTGGCTCAATAACTTGTAGCAAGGCTC-AGTCCT---CAAAGTAGCTAAGAGTATTCTATTGTTACTGAA-ACCT-------------------------------AGAGCACCTACCCAAATTGTGGAAGGA i mm10.chr15 C 0 I 25 e dasNov3.JH570235 54554 253 + 1056298 I e canFam3.chr10 46082209 352 - 69331447 I e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I a score=607416.000000 s hg38.chr22_GL383582v2_alt 71959 57 + 162811 ACTTCTCGAAG--TCCAGCCTTTTAGGACAGTTTCACAGCTGCCTCTAGTCA----ACACAGC s panTro5.chr22 28852308 57 + 37823149 ACTTCTCGAAG--TCCAGCCTTTTAGGACAGTTTCACAGCTGCCTCTAGTCG----ACACAGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41126636 57 + 50109623 ACTTCTCGAAG--TCCAGCCTTTTAGGACAGTTTCACAGCTGCCTCTAGTCG----ACACAGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3148910 57 + 4464012 ACTTCTCGAAG--TCCAGCCTTTTAGGACAGTTTCACAGCTGCCTCTAGTCG----ACACAGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645430 57 - 115148730 ACTTCTCGAAG--TCCAGCCTCTTAGGACAGTTTCACAGCTGCCTCTAGTCG----ACACAGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84260749 56 + 92844088 CCTTCTCGAAG--TCC-GCCTCTTAGGACAATTTCACAGTTGCCTCTAGTCG----ACACAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87605754 56 - 96509753 CCTTCTCGAAG--TCC-GCCTCTTAGGACAATTTCACAGTTGCCTCTAGTCG----ACACAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7097469 56 - 13098629 CCTTCTCGAAG--TCC-GCCTCTTAGGACAATTTCACAGTTGCCTCTAGTCG----ACACAGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4064007 61 - 4483953 CCTTCTCGAAG--TCCAGCCTCTTAGGACAATTTCACAGTTGCCTCTAGTCGACACACACAGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24694778 57 + 33263144 CCTTCTCGAAG--TCCAGCCTCTTAGGACAGTTTCACAGTTGCCTCTAGTCG----ACACAGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13968957 57 - 14338769 CCTTCTCGAAG--TCCAGCCTCTTAGGACAATTTCACAGTTGCCTCTAGTCG----ACACAGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 912280 57 + 1946073 CCTTCTCGAAG--TCCAGCCTCTTAGGAGAGTTGCACAGTTGCCTCTAGTCG----ATACAGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1941737 57 - 2117846 TCTTCTCAAAG--TCCAGCCACTTAGGACAGTTTCACAGTTGCCTCTAGTCG----ACACAGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8856532 57 - 16357246 TCTTCTCAAAG--TCCAGCCTCTTAGGACAGTTTTGCAGTTGCCTCTAGTCG----ACACAGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339262 59 - 1807191 TCTTCTCAAAAATTCCAGCCTCTTAGGACAGTTTCACAGTTGCCTCTAGTTG----ATAAAGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 17779 57 + 5963231 TCTTCTCAAAG--TCCAGCCTCTTAGGACAGTTTCACAGTTGCCTCTAGTCG----ACATAGC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36284181 57 - 42659167 CCTTCTCAAAG--TTCAGCCTCCCAGGGCAATTTCACAGCTGTCTCTAGGTG----ACAAAGC i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82810204 25 + 104043685 I e dasNov3.JH570235 54554 253 + 1056298 I e canFam3.chr10 46082209 352 - 69331447 I e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I a score=1104849.000000 s hg38.chr22_GL383582v2_alt 72016 131 + 162811 TAGttgtttgtttttgagacaagacatcgctctgtcgccttggctccctgcagccttgacctcctgggctcaagcaatcctcccacctcagccttcc-aagtagctgggacta-caggtacac-gccaccatgc s panTro5.chr22 28852365 131 + 37823149 TAGttgtttgtttttgagacaagacatcgctctgtcgccttggctccctgcagccttgacctcctgggctcaagcaatcctcccacctcagccttcc-aagtagctgggacta-caggtacac-gccaccatgc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41126693 132 + 50109623 TAGttgtttgtttttgagacaagacatcgctctgtcgccttggctccctgcagccttgacctcctgggctcaagcaatcctcccacctcagccttcc-aagtagctgggacta-caggtacacggccaccatgc i panPan2.chr22 C 0 M 326 s gorGor5.CYUI01015375v1 3148967 131 + 4464012 TAGttgtttgtttttgagacaagacatcgctctgtcgccttggctccctgcagccttgacctcctgggctcaagcaatcctcccacctcagccttcc-aagtagctgggacta-caggtacac-gccaccatgc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645487 131 - 115148730 TAGttgtttgtttttgagacaagacatggctctgtcaccttggctccctgcagccttgacctcctgggctcaagcaatcctcccacctcagccttcc-aagtagctgggacta-caggtacac-gccaccatgc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84260805 124 + 92844088 TAG----CTGtttttgagac-aaatctcactctgtcgcctcggctccctgcagccttga---ccggggctcaagcaatcctcccacctcagccttcc-aagtagctgggactaccaggtacac-gccaccatcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87605810 124 - 96509753 TAG----CTGtttttgagac-aaatctcactctgtcgcctcggctccctgcagccttga---ccggggctcaagcaatcctcccacctcagccttcc-aagtagctgggactaccaggtacac-gccaccatcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7097525 124 - 13098629 TAG----CTGtttttgagac-aaatctcactctgtcgcctcagctccctgcagccttga---ccggggctcaagcaatcctcccacctcagccttcc-aagtagctgggactaccaggtacac-gccaccatcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4064068 124 - 4483953 TAG----CTGtttttgagac-aaatctcactctgtcgcctcagctccctgcagccttga---ccgggactcaagcaatcctcccacctcagccttcc-aagtagctgggactaccaggtacac-gccaccatcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24694835 125 + 33263144 TAG----CTGtttttgagac-aaatctcactctgtcgcctcggctccctgcagccttga---ccggggctcaagcaatcctcccacctcagccttccaaaacagctgggactaccaggtacac-gccaccatcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13969014 124 - 14338769 TAG----CTGtttttgagac-aaatctcactctgtcgcctcggctccctgcagccttga---ctgggactcaagcaatcctcccacctcagccttcc-aagtagctgggactaccaggtacac-gccaccatcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 912337 125 + 1946073 TAG----ttgtttttgagacaaaatctcactctgttgccccggctccctgcagccttga---cctgggctcaagcaatcctcccacctcagccttcc-aagtagctggtactaccaggtacac-gccaccgtcc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1941794 131 - 2117846 TAGTTGTTTGTTTCTGAAACAAAGTCTCACTCTGTTGTCTTAgctccctgtagccttgaattcccaggctcaagcaatcctcccacctcagccttcc-aaggcactgggacta-caggtacat-gccaccatgc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8856589 127 - 16357246 TAG----TTGTTTCTGAAACAAAGTCTCACTCTGTTGCCTTAgctccctgcagccttcaactcccaggctccagcaatcctcccaccttagccttcc-aaggcgctgggaata-caggtacat-gccaccatgc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339321 131 - 1807191 TAGTTGTCTGTTTCTTAAACAAAGTCTCACTCTGTTGCCTTAgctccatgtagccttgaactcccaggctcaagcaatcctcccatctcagccttcc-aaggtgctgggacta-caggtacat-gccaccatgc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 17836 127 + 5963231 TAGTTGTTTGTTTCTGAAACAAAGTCTCACTCTGTTGCCTTAgctccccgtagccttg----cccaggctcaagcaatcctcccacctcagctttcc-aaggcgctgggacta-caggtacat-gccaccatgc i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82810204 25 + 104043685 I e dasNov3.JH570235 54554 253 + 1056298 I e canFam3.chr10 46082209 352 - 69331447 I e otoGar3.GL873526 36284238 0 - 42659167 C e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I a score=63540.000000 s hg38.chr22_GL383582v2_alt 72147 28 + 162811 ttggctaatGAC--AGTCtttttttttttt------ s panTro5.chr22 28852496 28 + 37823149 ttggctaatGAC--AGTCtttttttttttt------ i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3149098 15 + 4464012 ttcgctaatGAC--AGt------------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645618 30 - 115148730 ttggctaatGACAAAGTCAtttgttttttg------ i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84260929 16 + 92844088 tcagctaatGACAAAG-------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87605934 16 - 96509753 tcagctaatGACAAAG-------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7097649 16 - 13098629 tcagctaatGACAAAG-------------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4064192 16 - 4483953 tcagctaatGACAAAG-------------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24694960 16 + 33263144 tcagctaatGACAAAG-------------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13969138 16 - 14338769 tcagctaatGACAAAG-------------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 912462 16 + 1946073 tcagctaatGACAAAG-------------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1941925 21 - 2117846 tcggctaatGACAAAG--------------TCAGt- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8856716 22 - 16357246 tcggctaatGACAGAG--------------TCAGtt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339452 21 - 1807191 ttggctaatGACAAAG--------------TCAGt- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 17963 21 + 5963231 tcggctaatGACAAAG--------------CCAGt- i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82810204 25 + 104043685 I e dasNov3.JH570235 54554 253 + 1056298 I e canFam3.chr10 46082209 352 - 69331447 I e otoGar3.GL873526 36284238 0 - 42659167 C e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I e panPan2.chr22 41126825 326 + 50109623 M a score=1847425.000000 s hg38.chr22_GL383582v2_alt 72175 205 + 162811 ----ttttttttttttttttttttgagacag--tcttgctctattgcccagactggagtgtagtggtgtgctcttggctcactgcagcctctgccccctgggttcaagtgattcttgtgcctcagcctcccaaatagctgggatcacaggtgcacgccaccacacccggctaatttttgtatttttaggagagatgtggttttgccatgtt s panTro5.chr22 28852524 201 + 37823149 ----tttttttttttttttt----gagacag--tcttgctctattgcccagactggagtgtagtggtgtgatcttggctcactgcagcctctgccccctgggttcaagtgattcttgtgcctcagcctcccaaatagctgggatcacaggtgcatgccaccacacccggctaatttttgtatttttaggagagatgtggttttgccatgtt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41127161 205 + 50109623 ----ttttttttttttttttttttgagacag--tcttgctctattccccagactggagtgtagtggtgtgatcttggctcactgcagcctctgccccctgggttcaagtgattcttgtgcctcagcctcccaaatagctgggatcacaggtgcatgccaccacacccggctaatttttgtatttttaggagagatgtggttttgccatgtt i panPan2.chr22 M 326 C 0 s gorGor5.CYUI01015375v1 3149113 198 + 4464012 -------ttttttttttttt----gagacag--tcttgctctattgcccagaatggagtgtagtggtgtgatcttggctcactgcagcctctgccccctgggttcaagtgattcttgtgcctcagcctcccaaatagctgggatcacaggtgcatgccaccacacccggctaatttttgtatttttaggagagatgtggttttgccatgtt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645648 199 - 115148730 ------tttttttttttttt----gagacag--tcttgctctattgcccagactggagtgtagtggtgcgatcttggctcactgcagcctccgcctcctgggttcaagtgatttttgtgcctcagcctcccgagtagctgggatcacaggtgcacgccaccacacctggctaatttttgtatttttaggagagatgtggttttgccatgtt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84260945 198 + 92844088 -------ttttttttttttt----gagacagaatcttg--ctgttgcccagactggactgcagtgatacgatcttggctcactgcagcctccgcctcctgggttcaagtgattcttgtgcctcagcctccagaatagctgggatcacaggtgcacaccaccacacccggctaatttttgtatttttaggagagatgtggtttcgccatgtt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87605950 198 - 96509753 -------ttttttttttttt----gagacagaatcttg--ctgttgcccagactggactgcagtgatacgatcttggctcactgcagcctccgcctcctgggttcaagtgattcctgtgcctcagcctccagaatagctgggatcacaggtgcacaccaccacacccggctaatttttgtatttttaggagagatgtggtttcgccatgtt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7097665 198 - 13098629 -------ttttttttttttt----gagacagaatcttg--ctgttgcccagactggagtgcagtgatacgatcttggctcactgcagcctccgcctcctgggttcaagtgattcttgtgcctcagcctcccgaatagctgggatcacaggtgcacaccaccacacccggctaatttttgtatttttaggagagatgtggtttcgccatgtt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4064208 198 - 4483953 -------ttttttttttttt----gagacagaatcttg--ctgttgcccagactggagtgcagtgatatgatcttggctcactgcagcctccgcctcctgggttcaagtgattcttgtgcctcagcctcccgaatagctgggatcacaggtgcacaccaccacacccggctaatttttgtatttttaggagagatgtggtttcgccatgtt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24694976 202 + 33263144 -----ttttttttttttttt----gagacagaatcttgctctgttgcccagactggagtgcagtgatacgatcttggctcactgcagcctccgcctcctgggttcaagtgattcttgtgcctcagcctcctgaatagctgggatcacaggtgcacaccaccatacccggctaatttttgtatttttaggagagatgtggtttcgccatgtt i chlSab2.chr19 C 0 I 11 s manLeu1.NW_012102031v1 13969154 197 - 14338769 --------ttgttttttttt----gagacagaatcttg--ctgttgcccagactggagtgcagtgatacgatcttggctcactgcagcctccgcctcctgggttcaagtgattcttgtgcctcagcctcccgaatagctgggatcacaggtgcacaccaccacacccggctaatttttgtatttttaggagagatgtggtttcgccatgtt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 912478 200 + 1946073 -------ttttttgtttttt----gagacagaatcttgctctgttgcccagactggagtgcagtggtacaatcttggctcactgcagcctccgcctcctgggttcaagtgattcttgtgcctcagtctcccgaatagctgggatcacaggtgcacgccaccacacctggctaatttttgtatttttaggagagatgtggtttcaccatgtt i colAng1.NW_012115588v1 C 0 I 11 s calJac3.chrUn_GL286373 1941946 198 - 2117846 -------tttgttttgtttt----cagacagagtcttgctctgttgcccagactggagtgcagtggtgtgatcttggctcactgcagcctccacctcccaggttcaagtgattcttctgcctcagccaaccgagtatctgggatcacaggtgcacgacaccacacccagctaatttt--tgtttttagtagagatgtggtttcattgtgtt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8856738 207 - 16357246 atttttgtttgttttgtttt----gagacagagtcttgctctgttgcccagactggagtgcagtggtgtgatctcggctcactgcagcctctacctcccaggttcaagtgattcttctgcctcagccaaccgagtatctgggatcacaggtgcatgacaccacatccagctaatttttatgtttttagtagagatgtggtttcatcgtgtt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339473 204 - 1807191 ---ttttttttgtttgtttt----gagacagagtcttgctctgttgcccagattggagtgcagtggtgtgatctcggctcactgcagcctccacctcccaggttcaagtgattcttctgcctcagccaaccgagtatctgggatcacaggtgcacaccaccacacccagctaatttttctgtttttagtagagatgtgatttcatcgtgtt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 17984 206 + 5963231 -tttttgtttgttttgtttt----gagacagagtcttgctctgttgcccagactggcacgcagtggtgtcatctcggctcactgcagcctccacctcccaggttcaagtgattcttctgcctcagccaaccgagtatgtgggatcacaggtgcacgacaacacacccagctaatttttatgtttttagtagagacgtggtttcatcttgtt i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82810204 25 + 104043685 I e dasNov3.JH570235 54554 253 + 1056298 I e canFam3.chr10 46082209 352 - 69331447 I e otoGar3.GL873526 36284238 0 - 42659167 C e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I a score=7497.000000 s hg38.chr22_GL383582v2_alt 72380 7 + 162811 aggctgg----- s panTro5.chr22 28852725 7 + 37823149 aggctgg----- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41127366 7 + 50109623 aggctgg----- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3149311 7 + 4464012 aggctgg----- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645847 7 - 115148730 aggctgg----- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261143 6 + 92844088 -ggtcag----- i rheMac8.chr10 C 0 I 5 s macFas5.chr10 87606148 6 - 96509753 -ggtcag----- i macFas5.chr10 C 0 I 5 s macNem1.NW_012012688v1 7097863 6 - 13098629 -ggtcag----- i macNem1.NW_012012688v1 C 0 I 5 s cerAty1.NW_011999588v1 4064406 6 - 4483953 -ggtcag----- i cerAty1.NW_011999588v1 C 0 I 5 s manLeu1.NW_012102031v1 13969351 6 - 14338769 -ggtcag----- i manLeu1.NW_012102031v1 C 0 I 5 s calJac3.chrUn_GL286373 1942144 11 - 2117846 -ggccacgctga i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8856945 11 - 16357246 -ggccacgccga i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339677 11 - 1807191 -ggccacgctga i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18190 11 + 5963231 -ggccacgctga i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82810204 25 + 104043685 I e dasNov3.JH570235 54554 253 + 1056298 I e canFam3.chr10 46082209 352 - 69331447 I e otoGar3.GL873526 36284238 0 - 42659167 C e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I e colAng1.NW_012115588v1 912678 11 + 1946073 I e chlSab2.chr19 24695178 11 + 33263144 I a score=54853.000000 s hg38.chr22_GL383582v2_alt 72387 21 + 162811 tctagaactcctggccccagc s panTro5.chr22 28852732 21 + 37823149 tcttgaactcctggcctcagc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41127373 21 + 50109623 tcttgaactcctggcctcagc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3149318 21 + 4464012 tcttgaactcctggcctcagc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645854 20 - 115148730 tcttgaactcctggcctcag- i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1942155 21 - 2117846 tcttgatttcctggcctcagg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8856956 21 - 16357246 tcttgatttcctggcctcagg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339688 21 - 1807191 tcttgatttcctggcctcagg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18201 21 + 5963231 tcttgatttcctggcctcaga i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82810204 25 + 104043685 I e dasNov3.JH570235 54554 253 + 1056298 I e canFam3.chr10 46082209 352 - 69331447 I e otoGar3.GL873526 36284238 0 - 42659167 C e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I e colAng1.NW_012115588v1 912678 11 + 1946073 I e manLeu1.NW_012102031v1 13969357 5 - 14338769 I e chlSab2.chr19 24695178 11 + 33263144 I e cerAty1.NW_011999588v1 4064412 5 - 4483953 I e macNem1.NW_012012688v1 7097869 5 - 13098629 I e macFas5.chr10 87606154 5 - 96509753 I e rheMac8.chr10 84261149 5 + 92844088 I a score=644819.000000 s hg38.chr22_GL383582v2_alt 72408 66 + 162811 tgatctgcccacctcggcctcccaaagtgttgggattacaggcgtgagccact--acacctggccCAC s panTro5.chr22 28852753 66 + 37823149 tgatttgcccacctcggcctcccaaagtgttgggattacaggcgtgagccact--acacctggccCAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41127394 66 + 50109623 tgatctgcccacctcggcctcccaaagtgttgggattacaggcgtgagccact--acacctggccCAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3149339 66 + 4464012 tgatctgcccacctcggcctcccaaagtgttgggattacaggcatgagccact--acacctggccCAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645874 64 - 115148730 tgatctgcccacctcggcctcccaaagtgttgggattacaggcgtgagccact--acacctggcc--C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261154 66 + 92844088 tgatctgcccacctcggcctcctaaagtgctgggattacaggcatgagccact--aggcctggccCAC i rheMac8.chr10 I 5 C 0 s macFas5.chr10 87606159 66 - 96509753 tgatctgcccacctcggcctcctaaagtgctgggattacaggcatgagccact--aggcctggccCAC i macFas5.chr10 I 5 C 0 s macNem1.NW_012012688v1 7097874 66 - 13098629 tgatctgcccacctcggcctcctaaagtgctgggattacaggcatgagccact--aggcctggccCAC i macNem1.NW_012012688v1 I 5 C 0 s cerAty1.NW_011999588v1 4064417 66 - 4483953 tgatctgcccacctcggcctcctaaagtgctgggattacaggcatgagccact--aggcctggccCAC i cerAty1.NW_011999588v1 I 5 C 0 s chlSab2.chr19 24695189 66 + 33263144 tgatctgcccaccttggcctcctaaagtgctgggattacaggcgtgagccact--aggcctggccCAC i chlSab2.chr19 I 11 C 0 s manLeu1.NW_012102031v1 13969362 66 - 14338769 tgatctgcccatctcggccttctaaagtgctgggattacaggcatgagccact--aggcctggccCAC i manLeu1.NW_012102031v1 I 5 C 0 s colAng1.NW_012115588v1 912689 66 + 1946073 tgatctgcccacctcggcctcctaaagtgctgggattacaggcgtgagccact--aggcctggccCAC i colAng1.NW_012115588v1 I 11 C 0 s calJac3.chrUn_GL286373 1942176 68 - 2117846 tgatctgcccacctcagtctcccaaagtgctgggattacaggtgtaagccactgcgcgcctggccCAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8856977 68 - 16357246 tgatctgcccacctcagcctcccaaagtgctgggattacaggtgtaagccactgcgcgcccggtcCAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339709 68 - 1807191 tgatccgcccacctcagcctcccaaagtgctgggattacaggtgtaagccactgcgcgcctggccCAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18222 68 + 5963231 tgatctgcccacctcagcctcccaaagtgctgggattacaggtgtaagccactgcgcgcctggccCAT i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82810204 25 + 104043685 I e dasNov3.JH570235 54554 253 + 1056298 I e canFam3.chr10 46082209 352 - 69331447 I e otoGar3.GL873526 36284238 0 - 42659167 C e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I a score=38352.000000 s hg38.chr22_GL383582v2_alt 72474 3 + 162811 AGT s panTro5.chr22 28852819 3 + 37823149 AGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41127460 3 + 50109623 AGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3149405 3 + 4464012 AGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645938 3 - 115148730 AGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261220 3 + 92844088 AGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87606225 3 - 96509753 AGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7097940 3 - 13098629 AGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4064483 3 - 4483953 AGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24695255 3 + 33263144 AGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13969428 3 - 14338769 AGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 912755 3 + 1946073 AGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1942244 3 - 2117846 AGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857045 3 - 16357246 AGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339777 3 - 1807191 AGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18290 3 + 5963231 AGT i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82810229 3 + 104043685 AGT i mm10.chr15 I 25 C 0 e dasNov3.JH570235 54554 253 + 1056298 I e canFam3.chr10 46082209 352 - 69331447 I e otoGar3.GL873526 36284238 0 - 42659167 C e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I a score=565847.000000 s hg38.chr22_GL383582v2_alt 72477 63 + 162811 CAGTTCTTCATGCTTA------AAAAGAACACTCTTCCCATGGCCTC-TAACAGGGAGGGCAG-------------GTTTTCT s panTro5.chr22 28852822 63 + 37823149 CAGTTCTTCATGCTTA------AAAAGAACACTCTTCCCATGGCCTC-TAACAGGGAGGGCAG-------------GTTTTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41127463 63 + 50109623 CAGTTCTTCATGCTTA------AAAAGAACACTCTTCCCATGGCCTC-TAACAGGGAGGGCAG-------------GTTTTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3149408 63 + 4464012 CAGTTCTTCATGCTTA------AAAAGAGCACTCTTCCCATGGCCTC-TAACAGGGAAGGCAG-------------GTTTTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106645941 63 - 115148730 CAGTTCTTCATGCTTA------AAAAGAACGCTCTTCCCATGGCCTC-TAACAGGGAGGGCAG-------------GTTTTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261223 63 + 92844088 CAGTTCTTCATGCTTA------AAAAGAATGCTCTTCCCACGGCCTC-TAACAGGGAGGGCAG-------------GATTTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87606228 63 - 96509753 CAGTTCTTCATGCTTA------AAAAGAATGCTCTTCCCACGGCCTC-TAACAGGGAGGGCAG-------------GATTTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7097943 63 - 13098629 CAGTTCTTCATGCTTA------AAAAGAATGCTCTTCCCACGGCCTC-TAACAGGGAGGGCAG-------------GATTTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4064486 63 - 4483953 CAGTTCTTCATGCTTA------AAAAGAATGCTCTTCCCATGGCCTC-TAACAGGGAGGGCAG-------------GATTTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24695258 63 + 33263144 CAGTTCTTCATGCTTA------AAAAGAATGCTCTTCCCATGGCCTC-TAACAGGGAGGGCAG-------------GATTTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13969431 63 - 14338769 CAGTTCTTCATGCTTA------AAAAGAATGCTCTTCCCATGGCCTC-TAACAGGGAGGGCAG-------------GATTTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 912758 63 + 1946073 CAGTTCTTCATGCTTA------AAAAGAATGCTCTTCCCATGGCCTC-TAACAGGGAGGGCAG-------------AATTTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1942247 71 - 2117846 CAGTTCTTGATACTTA------CAAACAATGTTCTTCCCATGGCCTC-TAACAGGGAGGGCAG----GTCTCG-CTGTTTTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857048 60 - 16357246 CAGTTCTTGATGCTTA------TAAACA-----------ATGGCCTC-TAACAGGGAGGGCAG----GTCTCG-CTGTTTTCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339780 71 - 1807191 CAGTTCTCGATGCTTA------TAAACAATGTTCTTCCCATGGCCTC-TAACAGGGAGGACAG----GTCTTG-CTGTTTTCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18293 72 + 5963231 CAGTTCTTGATGCTTA------TAAACAATGTTCTTCCCATGGCCTCTTAACAGGGAGGGCAG----GTCTTG-CTGTTTTCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36284238 58 - 42659167 CAGGTCTTTATACTTAGCAAAGAAAAGTGTCCCCGCCCCCCAGTCTC---------AGGGCCT-------------G---CCC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82810232 70 + 104043685 CTGTTCTTCATGCAAA------TAAGA------CTTTTCAGAACCTA-TGGTGGGGAGGTGGGATAGGCCTAGCCCATTTTCT i mm10.chr15 C 0 C 0 e dasNov3.JH570235 54554 253 + 1056298 I e canFam3.chr10 46082209 352 - 69331447 I e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I a score=993308.000000 s hg38.chr22_GL383582v2_alt 72540 92 + 162811 GAGGCTCAGACAGAGCTGGACTATGTTAATCCTTTCGACCTCTCAGGAA-CCTGAGACCCCTAGGTCTCCCATCCCCAGGCTGG-AGGGCTTCT s panTro5.chr22 28852885 92 + 37823149 GAGGCTCAGACAGAGCTGGACTATGTTAATCCTTTCGACCTCTCAGGAG-CCTGAGACCCCTAGGTCCCCCATCACCAGGCTGG-AGGGCTTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41127526 92 + 50109623 GAGGCTCAGACAGAGCTGGACTATGTTAATCCTTTCGACCTCTCAGGAG-CCTGGGACCCCTAGGTCCCCCATCCCCAGGCTGG-AGGGCTTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3149471 91 + 4464012 GAGGCTCAGACAGAGCTGGACTATGTTAATCCTTTCGACCTCTCAGGAG-CCTGAGACCCCTAGCTC-CCCATCCCCAGGCTGG-AGGGCTTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646004 92 - 115148730 GAGGCTCAGACAGAGCTGGACTATGTTAATCCTTTTGACCTCTCAGGAG-CCTGAGACCCCTAGGTCCCCCATCCCCAGGCTGG-AGGGCTTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261286 92 + 92844088 GAGGCTCAGACAGAGCGGGACTATGTTAATCCTCTCGACCTTTCAGGAG-CCTGAGAACCCTAGGTCTCCCATCCCCAGGCTGG-GGGGCTTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87606291 92 - 96509753 GAGGCTCAGACAGAGCGGGACTATGTTAATCCTCTCGACCTTTCAGGAG-CCTGAGAACCCTAGGTCTCCCATCCCCAGGCTGG-GGGGCTTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098006 92 - 13098629 GAGGCTCAGACAGAGCGGGACTATGTTAATCCTCTCGACCTTTCAGGAG-CCTGAGAACCCTAGGTCTCCCATCCCCAGGCTGG-GGGGCTTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4064549 92 - 4483953 GAGGCTCAGACAGAGCGGGACTATGTTAATCCTCTCGACCTCTCAGGAG-CCTGAGAACCCTAGGTCTCCCATCCCCAGGCTGG-GGGGCTTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24695321 92 + 33263144 GAGGCTCAGACAGAGCTGGACTGTGTTAATCCTCTCGACCTCTCAGGAG-CCTGAGAACCCTAGGTCTCCCATCCCCAGGCTGG-GGGGCTTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13969494 92 - 14338769 GAGGCTCAGACAGAGCGGGACTATGTTAATCCTCTCGACCTCTCAGGAG-CCTGAGAACCCTAGGTCTCCCATCCCCAGGCTGG-GGGGCTTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 912821 92 + 1946073 GAGGCTCAGACAGAGCTGGACTATGTTAATTCTCTCGACCTCTCAGGAG-CCTGAGAACCCTAGGTCTCCCATCCCCAGGCTAG-GGGGCTTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1942318 94 - 2117846 GAGGCTGAGACAGAGCTGGACTATGTTAATCCTCTTGACCTCTCAGGAGCCTGGAGGCCCCTAGGTCCCTCATCCCCAGGCTGGAGGGGCTTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857108 90 - 16357246 GAGGCTCAGACAGAGCTGGACTATGTTAATCCTCTTGATCTCTCAGG---CCTGAGGCCCCTGGGTCCCTCAACCCCAGGCTGG-GGGGCTTTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339851 92 - 1807191 GAGGCTCTGACAGAGCTGGACTATGTTAATCCTCTTGACCTCTCAGGAG-CCTGAGGCCCCTAGGTCCCTCAACCCCAGGCTGG-GGGGCTTCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18365 91 + 5963231 GAGGCTCAGACAGAGCTGGACTATGTTAATCCTCTTGACCTCTCAGGAG-CCTGAGGCCCCTAGGTCCCTCAACCCCAGGCTG--GGGGTTTCT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36284296 82 - 42659167 CAGGCTAACACAGATCCATTGGATGTTAACCCTCCTG-CACCTCAGGAG-CCTG--------GGGTCACCCACCCCCA-GCTGC-TGGGCTTTT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82810302 79 + 104043685 GAGGCTTGCATAGAGCTGGGA-GTTTTAATTCTATTAGTTCTTCAGGAA-CCTGAGGTACTCAAG------------AGGCTCT-GGGGCTTCT i mm10.chr15 C 0 C 0 s dasNov3.JH570235 54807 65 + 1056298 GAGGCTCACACATAGCTGGAGCGTG---GTCCTCCTGGCTCCTGAGGAG-CC-------------TCTCTGACCTCTGGGCT------------ i dasNov3.JH570235 I 253 C 0 e canFam3.chr10 46082209 352 - 69331447 I e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I a score=2622969.000000 s hg38.chr22_GL383582v2_alt 72632 225 + 162811 CTCCTCTTCCAGCCCATG-TGCA-G-------AAGGG-GATTCTGATGGCCCACGTAGGACA-GATGGA----TTGTACCAAAGGTCCCTGTGGAACGCTTCATGGGCCATC----TGATGTGGAAAGGTCTC-AAAG-ACAAACAGCAGTTTCCTAGG-AA-TCAGTCCAG---TAAAATTTCACC----AGAAGCCAGAAGTGGTGGCAGCCTTGCCCCTCCTTCACTTGCTATCTGCCAATCACTGTG--CTTA---- s panTro5.chr22 28852977 225 + 37823149 CTCCTCTTCCAGCCCACG-TGCA-G-------AAGGG-GATTCTGATGGCCCACGTAGGACA-GATGGA----TTGTACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----TGATGTGGAAAGGTCTC-AAAG-ACAAACAGCAGTTTCCTAGG-AA-TCAGTCCAG---TAAAATTTCACC----AGAAGCCAGAAGTGGTGGCAGCCTTGCCCCTCCTTCACCTGCTATCTGCCAATCACTGTG--CTTA---- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41127618 225 + 50109623 CTCCTCTTCCAGCCCACG-TGCA-G-------AAGGG-GATTCTGATGGCCCACGTAGGACA-GATGGA----TTGTACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----TGATGTGGAAAGGTCTC-AAAG-ACAAACAGCAGTTTCCTAGG-AA-TCAGTCCAG---TAAAATTTCACC----AGAAGCCAGAAGTGGTGGCAGCCTTGCCCCTCCTTCACTTGCTATCTGCCAATCACTGTG--CTTA---- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3149562 226 + 4464012 CTCCTCTTCCAGCCCATG-TGCA-G-------AAGGG-GATTCTGATGGCCCACGTAGGACA-GATGGA----TTGTACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----TGATGTGGAAAGGTCTCAAAAG-ACTAACAGCAGTTTCCTAGG-AA-TCAGTCCAG---TAAAATTTCACC----AGAAGCCAGAAGTGGTGGCAGCCTTGCCCCTCCTTCACTTGCTATCTGCCAATCACTGTG--CTTA---- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646096 225 - 115148730 CTCCTCTTCCAGCCCAGG-TGCA-G-------AAGGG-GATTCTGATGGCCCACGTAGGACA-GATGGA----TTGTACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----TGATGTGGAAAGGTCTC-AAAG-AGAAACAGCAGCTTCCTAGG-TA-TCAGTCCAG---TAAAATTTCACC----AGAAGCCAGAAGTGGTGGCAGCCTCGTCCCTCCTTCACTTGCTATCTGCCAATCACTGTG--CTTA---- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261378 225 + 92844088 CTCCTCTTCCAGCCCAGG-TGCA-G-------AAGGG-GATTCTGATGGCCCACATAGGACA-GATGGA----TTATACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----CTATATGGAAAGGTCTC-AAAG-AGAAACAGCAGTTTCCAAGG-AA-TCAGTCCAG---TAAAATTTCACC----AGAAACCAGAAGTGATGGCAGCCTCGCCCCTCCTTCACTTGCTATCTGCCAATCACTGTG--CTTA---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87606383 225 - 96509753 CTCCTCTTCCAGCCCAGG-TGCA-G-------AAGGG-GATTCTGATGGCCCACATAGGACA-GATGGA----TTATACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----CTATATGGAAAGGTCTC-AAAG-AGAAACAGCAGTTTCCAAGG-AA-TCAGTCCAG---TAAAATTTCACC----AGAAACCAGAAGTGATGGCAGCCTCGCCCCTCCTTCACTTGCTATCTGCCAATCACTGTG--CTTA---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098098 225 - 13098629 CTCCTCTTCCAGCCCAGG-TGCA-G-------AAGGG-GATTCTGATGGCCCACATAGGACA-GATGGA----TTATACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----CTATATGGAAAGGTCTC-AAAG-AGAAACAGCAATTTCCAAGG-AA-TCAGTCCAG---AAAAATTTCACC----AGAAACCAGAAGTGATGGCAGCCTCGCCCCTCCTTCACTTGCTATCTGCCAATCACTGTG--CTTA---- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4064641 225 - 4483953 CTCCTCTTCCAGCCCAGG-TGCA-G-------AAGGG-GATTCTGATGGCCCACATAGGACA-GATGGA----TTATACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----CTATATGGAAAGGTCTC-AAAG-AGAAACAGCAGTTTCCAAGG-AA-TCAGTCCAG---TAAAATTTCACC----AGAAACCAGAAGTGATGGCAGCCTCGCCCCTCCTTCACTTGCTATCTGCCAATCACTGTG--CTTA---- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24695413 225 + 33263144 CTCCTCTTCCAGCCCAGG-TGCA-G-------AAGGG-GATTCTGATGGCCCACATAGGACA-GATGGA----TTATACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----CTATATGGAAAGGTCTC-AAAG-AGATACAGCAGTTTCCAAGG-AA-TCAGTCCAG---TAAAATTTCACC----AGAAACCAGAAGTGATAGCAGCCTCGCCCCTCCTTCACTTGCTATCTGCCAATCACTGTG--CTTA---- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13969586 225 - 14338769 CTTCTCTTCCAGCCCAGG-TGCA-G-------AAGGG-GATTCTGATGGCCCACATAGGACA-GATGGA----TTATACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----CTATATGGAAAGGTCTC-AAAG-AGAAACAGCAGTTTCCAAGG-AA-TCAGTCCAG---TAAAATTTCACC----AGAAACCAGAAGTGATGGCAGCCTCGCCCCTCCTTCACTTGCTATCTGCCAATCACTGTG--CTTA---- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 912913 226 + 1946073 CTCCTCTTCCAGCCCAGG-TGCA-G-------AAGGG-GATTCTGATGGCCTACATAGGACA-GATGGA----TTATACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----CTATATGGAAAAGTCTC-AAAG-AGAAACAGCAGTTTCCAAGGAAA-TCAGTCCAG---TAAAATTTCACC----AGAAGCCAGAAGTGATGGCAGCCTCGCCCCTCCTTCACTTGCTATCTGCCGATCACTGTG--CTTT---- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1942412 223 - 2117846 CTCCTCTTCCAGCCCAGT-TGCA-G-------AAGGG-GATTCTGATAGCCCACAAAGGACA-GATGG-----TTGTACCAAAGGTCTCTGTAGAATGCTTCAC-GGCCATC----CCATGTGAAAAGATCTC---AG-AGAAACAGTAGTTTCCAAGG-AA-TCCATCAAG---AAAAATTTCACC----AGAAGCCAGAAGTGGTGGCAGCCTCGCCCCTCCTTCACTTGCTTTCTGCCAATCACTGTGCTCTTA---- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857198 221 - 16357246 CTCCTCTTTCAGCCCAGG-TGCA-G-------AAGGG-GATTCTGATAGCCCACAAATGACA-GATGG-----TTGTACCAAAGGTCTCTGTAGAATGCTTCAT-GGCCATC----CCATGTGAAAAGGTCTC--AAG-AGAAACAGTAGTTTCTAAGG-AA-TCCATCAAG---AAAAATTTCACC----AGAGGCCAGAAGTGGTGGCAGCCTCG---CTCCTTCACTCGCTTTCTGCCAATCACTGTGCTCTTA---- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1339943 223 - 1807191 CTCCTCTTCCAGCCCAGG-TGCA-G-------AAGGG-GATTCTGATAGCCCACAAAGGACA-GATGG-----TTGTACCAAAGGTCTCTGTAGAATGCTTCAT-GGCCATC----CCATGTGAAAAGGTCTC---AG-AGAAACAGTAGTTTCCAAGG-AA-TCCATCAAG---AAAAATTTCACC----AGAAGCCAGAAGTGGTGGCAGCCTCGCTCCTCCTTCACTTGCTTCCTGCCAATCACTGTGCTCTTA---- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18456 223 + 5963231 CTCCTCTTCCAGCCCAGG-TGCA-G-------AAGGG-GATTCTGATAGCCCACAAAGGACA-GATGG-----TTGTACCAAAGGTCTCTGTAGAATGCTTCAT-GGCCATC----TCATGTAAAAAGGTCTC---AG-AGAAACAGTAGTTTCCAAGG-AA-TCCATCAAG---AAAAATTTCACC----AGAAGCCAGAAGTCGTGGCAGCCTCGCCTCTCCTTCACTCGCTTTCTGCCAATCACTGTGCTCTTA---- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36284378 228 - 42659167 CTTTTTTTCCAGCCCAGG-TGCAGG-------AAGGT-GACTCCAACGCCCCATGTAAGGGA-GATGGG----TTGACCCAAGGGCCTCTTTGGAATGCTCCACAGGCCATT----CCATGCACAAAGGTCTC-AGAG-AGACATAGTAATTTCCAAGG-AATTCAGTCTAGAAAAAAAATTATACC----AGGAGCCAAGAAGGGTGGCAGCCTGGCCCCTCC-TCACTTGTT-TCTGTCAATCACAGTG--GTCA---- i otoGar3.GL873526 C 0 I 2 s mm10.chr15 82810381 227 + 104043685 CTCATCTATCATTTCTGGTTTCA-G-------GAAGT-TACTCTTATGACCCATGTAGGGCA-AATAGACAGTTTGTTCAAGAGA---CTGAGGAGTGTTTCATGGTCTGTCTTATTTATATGAGAAGGGTTC-AGGA-AGACACAATAGTTTCCAAGG-AA-TCAGTCCAT---AAAAATTACACC----AAAAGTCACTGTTGATGGCAA----GTTGCTCTCATCCTTGCTTTCTGCCAATATCTGCA--CTTT---- i mm10.chr15 C 0 I 7 s canFam3.chr10 46082561 199 - 69331447 CTTCTCTTCCGGCCCAGG-CTCT-GGGTCAGAAAGAC-GATCCTGACGACCCACGTGGGGCA-GTGGGG----TTG-ACCGAGGGCCTCCTCAGAGAACTTCATGGGTCTCT----CCGTGCGCAGA-GTCTC-AGAG--GACACAGCAGTTTCCAAGG--A-TCAGTGCAG---AACAATCAGAGCAGAAAGAAGCCGGCAGCGGCGGCGGCTT------------------------CCCATCA--------------- i canFam3.chr10 I 352 C 0 s dasNov3.JH570235 54872 222 + 1056298 ----TCTTCCAGCTCTGG-CCAA-G-------GAGGGCCAGTCTGATGGCCCATGTAGAGTAGGAGGGG----TTGTTCCAAGGGCCTCCTTGGAAGGCTTCCC-GGTCCTT----ACACATGCAAGGGTCTC-AGAGAAGGCACAGTAGTTCCCAAAG-AA-TTCACCCAG---GAAAAGTA-ACC----AGAAACCAGGAGCTGTGGCAGCCTCACCCC----TTGCCTGCAGTGGGAAGGCGAGTGTT--TGTGGGGG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5072743 606 - 6317780 I e micMur3.chr7 5708841 568 + 108171978 I a score=480449.000000 s hg38.chr22_GL383582v2_alt 72857 36 + 162811 AGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAA s panTro5.chr22 28853202 36 + 37823149 AGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41127843 36 + 50109623 AGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3149788 32 + 4464012 AGACTGTCACTGGGGCTCAC----CTGCTTCCTCAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646321 36 - 115148730 AGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261603 36 + 92844088 AGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87606608 36 - 96509753 AGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098323 36 - 13098629 AGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4064866 36 - 4483953 AGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24695638 31 + 33263144 AGACTGTCACTAGGGCTC-----ACTGCTTCCTCAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13969811 36 - 14338769 AGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913139 36 + 1946073 AGACTGTCACTGGGGCTCAACTAACTGCTTCCTCAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1942635 36 - 2117846 AGACTCTCACTGGGACTCAACTGACTGCTTCCTCAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857419 32 - 16357246 AGACTCTCACTGGGGCTCA----CCTGCTTCCTCAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340166 36 - 1807191 AGCCTCTCACTGGGGCTCACCTAACTGCTTCCTCAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18679 36 + 5963231 AGACTCTCACTGGGGCTCACCTAACTGCTTCCTCAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5709409 36 + 108171978 AGACTGTCACTGGGGCTCACCTTGCTGCTTCCTCAA i micMur3.chr7 I 568 I 166 s proCoq1.NW_012136747v1 5073349 36 - 6317780 AGACTGTCATTGGGGCTCACCTTGCTGCTTCCTCAA i proCoq1.NW_012136747v1 I 606 I 169 s otoGar3.GL873526 36284608 36 - 42659167 AGACTATCGCTGGAGCTTACCCTTCTGCCACCTCAA i otoGar3.GL873526 I 2 C 0 s mm10.chr15 82810615 36 + 104043685 TATCTGTTTTGGGTGTTCTCTTTGTCTCTTCCTCAA i mm10.chr15 I 7 C 0 s canFam3.chr10 46082760 19 - 69331447 ------------GAGCACCCCT-----TCTTCTCAG i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 55094 31 + 1056298 AGAAGGT-----AGACTCGTTATGCCTCTTCCGCAA i dasNov3.JH570235 C 0 C 0 a score=1191871.000000 s hg38.chr22_GL383582v2_alt 72893 103 + 162811 GACCAATTTGGTGCCCTC----CCCTGAC----AAACCCCAAGAA--------C-----CCAAGTGTCACCAGCC-CTTTCTGCTTCCATAAAGTT--CAC------ACA--CGCAGAACTGCTAAG--GCGGCTGG s panTro5.chr22 28853238 103 + 37823149 GACCAATTTGGTGCCCTC----CCCTGAC----AAACCCCAAGAA--------C-----CCAAGTGTCACCAGCC-CTTTCTGCTTCCATAAAGTT--CAC------ACA--CGCAGAACTGCTAAG--GCGGCTGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41127879 103 + 50109623 GACCAATTTGGTGCCCTC----CCCTGAC----AAACCCCAAGAA--------C-----CCAAGTGTCACCAGCC-CTTTCTGCTTCCATAAAGTT--CAC------ACA--CGCAGAACTGCTAAG--GCGGCTGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3149820 107 + 4464012 GCCCAATTTGGTGCCCTT----CCCTGACAAATAAACCCCAAGAA--------C-----CCAAGTGTCACCAGCC-CTTTCTGCTTCCATAAAGTT--CAC------ACA--CGCAGAACTGCTAAG--AAGGCTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646357 109 - 115148730 GCCCAATTTGGTGCCCTC----CCCTGACAAATAAACCCCAAGAA--------C-----CCAAGTGTCACCAGCC-CTTTCTGCTTCCATAAAGTT--CAC------ACA--CGCAGAACTGCTTAGCTCCTGCTGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261639 107 + 92844088 GCCCAATTTGGTGCCCTC----CCCTTACAAATAAACCCCAGGAA--------C-----CCAGGTGTCACCAGCC-CTTTCTGCTTCCATAAAGTT--TAC------ACA--CACAGAACTGCTAAG--AAGGCTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87606644 107 - 96509753 GCCCAATTTGGTGCCCTC----CCCTTACAAATAAACCCCAGGAA--------C-----CCAGGTGTCACCAGCC-CTTTCTGCTTCCATAAAGTT--TAC------ACA--CACAGAACTGCTAAG--AAGGCTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098359 107 - 13098629 GCCCAATTTGGTGCCCTC----CCCTTACAAATAAACCCCAGGAA--------C-----CCAGGTGGCACCAGCC-CTTTCTGCTTCCATAAAGTT--TAC------ACA--CACAGAACTGCTAAG--AAGGCTGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4064902 107 - 4483953 GCCCAATTTGGTGTCCTC----CCCTTACAAATAAACCCCAGGAA--------C-----CCAGGTGTCACCAGCC-CTTTCTGCTTCCATAAAGTT--TAC------ACA--CACAGAACTGCTAAG--AAGGCTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24695669 109 + 33263144 GCCCAATTTGGTGCCCTC----CCCTTACAAATAAACCCCAGGAA--------C-----CCAGGTGTCACCAGCC-CTTTCTGCTTCCATAAAGTTTATAC------ACA--CACAAAACTGCTAAG--AAGGCTGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13969847 107 - 14338769 GCCCAATTTGGTGCCCTC----CCCTTACAAATAAACCCCAGGAA--------C-----CCAGGTGTCACCAGCC-CTTTCTGCTTCCATAAAGTT--CAC------ACA--CACAGAACTGCTAAG--AAGGCTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913175 107 + 1946073 GCCCAATTTGGTGCCCTC----CCCTTACAAATAAACCCCAGGAA--------C-----CCAGGTGTCACCAGCC-CTTTCTGCTTCCATAAAGTT--TAC------ACA--CACAGAACTGCTAAG--AAGGCTGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1942671 107 - 2117846 GCCCAATTTGGTGTCCTC----CACTGACAAATAAACCCCAGGAA--------C-----CCAGGTGTCACCAGCC-CTTTCTGCTTCCATGAAGTT--CAC------ACA--TCCAGAACTGTTAAG--AAGGCTGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857451 107 - 16357246 GCCCAATTTGGTGCCCTC----CACTGACAAATAAACCCCAGGAA--------C-----CCAGGTGTCACCAGCC-CTTTCTGCTTCCATAAAGTT--CAC------ACA--TCCAGAACTGTTAAG--AAGGCTGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340202 107 - 1807191 GCCCAATTTGGTGCCCTT----CACTGACAAATAAACCCCAGGAA--------C-----CCACGTGTCACCAGCC-CTTTCTGCTTCCATAAAGTT--CAC------ACA--TCCAGAACTGTTAAG--AAGGCTGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18715 107 + 5963231 GCCCAATCTGGTGCCCTC----CACTGACAAATAAACCCCAGGAA--------C-----CCACGTGTCACCAGCC-TTTTCTGCTTCCATAAAGTT--CAC------ACA--TCCAGAACTGTTAAG--AAGGCTGG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36284644 103 - 42659167 ACCCTGTTT-GTGACCTC----TGCCAAC----TAACACTGGGGA--------G-----CGAGGCACCACCAGTC--TTTCTCCTTTCATGAAACT--CAC------TCATGTGCAGACCAGGTAAG--AAGTCTGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82810651 107 + 104043685 -ACCTCTCCTGCTATCAC----CACCAACAGACAAACTTCAGGAAAAAACAGGC-----CTCTGTGTAATAA--------CTGCTTCCACAAAGCT--TAT------CAA--CAAGCACCAGCTGGG--AAGGCTGG i mm10.chr15 C 0 C 0 s canFam3.chr10 46082780 113 - 69331447 GCCC--TCTGGTGCCCTC----CTCCAACAAATAACCGTCAGGAAAA------C-----CCAGGCGGCACCACCG-TTTTCTGTTCTCACACAACT--TACTAACAGGCA--GGCAAAATGGTTCAG--AAGGCCGG i canFam3.chr10 I 1 I 438 s dasNov3.JH570235 55125 119 + 1056298 ACCCTCTTTGCAGCACCCCACACCCCATCAAAAAAAACCCAAACA--------CACACTTCAGGCACCACTATCCTCTTTGTGTTTACAGAAAGGC--TACTA----ATA--CACAACATAGTTAAG--AAGGCTGT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5073385 169 - 6317780 I e micMur3.chr7 5709445 166 + 108171978 I a score=573358.000000 s hg38.chr22_GL383582v2_alt 72996 61 + 162811 -------------GGCCTG--CGGGAGCTAAGATTGAGCTGTTCCCAAG----------------CACG--TACATGCACATGCTC--TTGCCCAA s panTro5.chr22 28853341 61 + 37823149 -------------GGCCTG--CGGGAGCTAAGATTGAGCTGTTCCCAAG----------------CACG--TACATGCACATGCTC--TTGCACAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41127982 61 + 50109623 -------------GGCCTG--CGGGAGCTAAGATCGAGCTGTTCCCAAG----------------CACG--TACATGCACATGCTC--TTGCCCAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3149927 61 + 4464012 -------------GGCCTG--CGGGAGCTAAGATTGAGCTGTTCCCAAG----------------CACG--TACATGCACATGCTC--TTGCCCAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646466 61 - 115148730 -------------GGCCTG--CGGGAGCTAAGATTGAGCTGTTCCCAAG----------------CACG--TACATGCACATGCTC--TTGCCCAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261746 61 + 92844088 -------------GGCCTG--CAGGAGCTAAGACTGAGCTATTCCCAAG----------------CACG--TACATGCACATGCTC--TTGCCCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87606751 61 - 96509753 -------------GGCCTG--CAGGAGCTAAGACTGAGCTATTCCCAAG----------------CACG--TACATGCACATGCTC--TTGCCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098466 61 - 13098629 -------------GGCCTG--CAGGAGCTAAGACTGAGCTATTCCCAAG----------------CACG--TACATGCACATGCTC--TTGCCCAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065009 61 - 4483953 -------------GGCCTG--CAGGAGCTAAGACTGAGTTATTCCCAAG----------------CACA--TACATGCACATGCTC--TTGCCCAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24695778 61 + 33263144 -------------GGCCTG--CAGGAGCTAAGATTGAGCTATTCCCAAG----------------CACG--TACATGCACATGCTC--TTGCCCAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13969954 61 - 14338769 -------------GGCCTG--CAGGAGCTAAGACTGAGCTATTCCCAAG----------------CACG--TACATGCACATGCTC--TTGCCCAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913282 61 + 1946073 -------------GGCCTG--CAGGAGCTAAGATTGAGCTGTTCCCAAG----------------CACG--TACATGCACATGCTC--TTGCCCAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1942778 55 - 2117846 -------------AGCCTG--GGGAAGCTAAGACTGAGCTGTTCC----------------------CA--TACACACACGTGCCC--TTGCCCAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857558 60 - 16357246 -------------AGCCTG--GGGAAGCTAAGACTGAACAGTTCCCAA-----------------CACA--TACACACACGTGCCC--TTGCCCAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340309 60 - 1807191 -------------AGCCTG--GGGAAGCTAAGACTGAGCTGTCCGCAA-----------------CACA--TACACACACGTGCCC--TTGCCCAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18822 60 + 5963231 -------------AGCCTG--GGGAAGCTAAGACTGAGCTGTTCCCAA-----------------CACA--TACACACACGTGCCC--TTGCCCAA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36284747 60 - 42659167 -------------GGCCCG--T-GAAGCTAAGAATGTGCTGTTCCCAAG----------------CACA--CATGCACAGACACCC--TTGGCCTA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82810758 79 + 104043685 -------------TGTGTGTCCCGGAGTGGAGAATGCACCATTCAGAAGcatatatacatatatacata--tatatacatatacacatCTGCCC-- i mm10.chr15 C 0 C 0 s dasNov3.JH570235 55244 73 + 1056298 AGTGTGTGCATGGAGCATG--T-GCAGATAAAGAAGTGCTACTTAAAAG----------------CACATCTACATATACCTG-AC--TTGCCAT- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46082893 438 - 69331447 I e proCoq1.NW_012136747v1 5073385 169 - 6317780 I e micMur3.chr7 5709445 166 + 108171978 I a score=645427.000000 s hg38.chr22_GL383582v2_alt 73057 48 + 162811 GGAGGTTCCTGACTACTTGGCAGAAAACACCAATAAGCAGGAACACA---C s panTro5.chr22 28853402 48 + 37823149 GGAGGTTCCTGACTACTTGGCAGAAAACACCAATAAGCAGGAACACA---C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128043 48 + 50109623 GGAGGTTCCTGACTACTTGGCAGAAAACACCAATAAGCAGGAACACA---C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3149988 48 + 4464012 GGAGGTTCCTGACTACTTGGCAGAAAACACCAATGAGCAGGAACACA---C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646527 48 - 115148730 GGAGGTTCCTGACTACTTGGCAGAAAACACCAATGAGCAGGAACACA---C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261807 51 + 92844088 GGAAGTTCCTGACTACTTGGCAGGTAACACCAATGAGCAGGAACACATTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87606812 51 - 96509753 GGAAGTTCCTGACTACTTGGCAGGTAACACCAATGAGCAGGAACACATTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098527 51 - 13098629 GGAAGTTCCTGACTACTTGGCAGGTAACACCAATGAGCAGGAACACATTCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065070 51 - 4483953 GGAAGTTCCTGACTACTTGGCAGGTAACACCAATGAGCAGGAACACATTCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24695839 51 + 33263144 AGAAGTTCCTGACTACTTGGCAGGTAACACCAATGAGCAGGAACACATTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970015 51 - 14338769 GGAAGTTCCTGACTACTTGGCAGGTGACACCAATGAGCAGGAACACATTCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913343 51 + 1946073 GGAAGTTCCTGACCACTTGGCAGGTAACAACAATGAGGAGGAACACACTCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1942833 51 - 2117846 GGAGGTTCCTGACTACTCACCAGAAAACACCAATGAGCAGGAATACACTCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857618 51 - 16357246 GGAGGTTCCTGACTACTTGGCAGAAAACATCAATGAGCAGGAATACACTCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340369 51 - 1807191 GGAGGTTCCTGACTACTTGGCAGAAAACACCAATGAGCAGGAATACACTCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18882 50 + 5963231 AGAGGTTCCTGACTACTTGGCAGAAAACACCAATGAGCAGGAATACACTC- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5709611 48 + 108171978 GGAGGTTCCTGACTGCTTGGCAGAGAACACCAATGAGCAGGAAGACAC--- i micMur3.chr7 I 166 I 486 s proCoq1.NW_012136747v1 5073554 48 - 6317780 GGAGGTTCCTGACTGCTTGGCAGAGAACACCAATGAGCAGGAAGACAC--- i proCoq1.NW_012136747v1 I 169 I 474 s otoGar3.GL873526 36284807 48 - 42659167 GGGGGTTCCTGACTACTTGGCAGAAAATGCCAACAAGCAGGAAGACAC--- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82810837 42 + 104043685 -----TTGCTAAGTGCTTTACA-AAAACACCAACAAGGAGGAAGACAC--- i mm10.chr15 C 0 I 3 s dasNov3.JH570235 55317 46 + 1056298 AAAGATTCCT----ACTTGAT-GAAAATAGGGATAAATGGGAAGATGATTC i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46082893 438 - 69331447 I a score=497607.000000 s hg38.chr22_GL383582v2_alt 73105 55 + 162811 ACAGAGGCCATGGCACAACATCACCACAGACAAGTAAAAGC-----------------------------------------------------------AAGCCCTGGGAATG s panTro5.chr22 28853450 55 + 37823149 ACAGAGGCCATGGCACAACATCACCACAGACAAGTAAAAGC-----------------------------------------------------------AAGCCCTGGGAATG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128091 55 + 50109623 ACAGAGGCCATGGCACAACATCACCACAGACAAGTAAAAGC-----------------------------------------------------------AAGCCCTGGGAATG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150036 55 + 4464012 ACAGAGGCCATGGCACAACATCACCACAGACAAGTAAAAGC-----------------------------------------------------------AAGCCCTGGGAATG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646575 55 - 115148730 ACAGAGGCCATGGCACAACATCACCACAGACAAGTAAAAGC-----------------------------------------------------------AAGCCCTGGGAATG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261858 55 + 92844088 ACGGAGGCCACGACACATCACCACCACACGCAAGTAAAAGC-----------------------------------------------------------AGGCCCTGGGAATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87606863 55 - 96509753 ACGGAGGCCACGACACATCACCACCACACGCAAGTAAAAGC-----------------------------------------------------------AGGCCCTGGGAATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098578 55 - 13098629 ACGGAGGCCACGACACATCACCACCACACGCAAGTAAAAGC-----------------------------------------------------------AGGCCCTGGGAATG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065121 55 - 4483953 ACGGAGGCCACGACACATCACCACCACACCCAAGTAAAAGC-----------------------------------------------------------AGGCCCTGGGAATG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24695890 55 + 33263144 ACAGAGGCCACGGCACATCATCACCACACGCAAGTAAAAGC-----------------------------------------------------------AGGCCCTGGGAATG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970066 55 - 14338769 ACGGAGGCCACGACACATCACCACCACACGCAAGTAAAAGC-----------------------------------------------------------AGGCCCTGGGAATG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913394 55 + 1946073 ACAGAGGCCACGGCACAACATCACCACACACAAGTAAAGGC-----------------------------------------------------------AAGCCTTGGGAATG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1942884 52 - 2117846 ACAGAGACCATGGCA---CATCACCACACACAGGTAAAGGC-----------------------------------------------------------AGGCCCTGGGAATG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857669 52 - 16357246 ACAAAGACCATGGCA---CATCACCACACAGAGGTAAAGGC-----------------------------------------------------------AGGCCCTGGGAAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340420 52 - 1807191 ACAGAGACCATGGCA---CATCACCATACACAGGTAAAGGC-----------------------------------------------------------AGACCCTGGGAATG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18932 51 + 5963231 -CAGAGACCATGGCA---CATCACCACATACAGGTAAAGGC-----------------------------------------------------------AGGCCCTGGGAATG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36284855 55 - 42659167 ACCACAGGAACAGCACACTGTCACCAGGCACATGTGAAGGC-----------------------------------------------------------AGGCCCCATGACTG i otoGar3.GL873526 C 0 I 260 s mm10.chr15 82810882 50 + 104043685 GCAGAGACAGCAGTGTATATACAACA-----ACCTAGACTC-----------------------------------------------------------CAGCTCTGGGAATG i mm10.chr15 I 3 C 0 s dasNov3.JH570235 55363 114 + 1056298 TCAAAGACAGCACTACAGTGTGTCCGGGTTCAGATGGAAGCCAATCTCCCGCCCTTCTCAGGATGTCTGTGGCGATGGCATGGCTCCTTGGTCCTAAAGAGGACCCCGGGCCTG i dasNov3.JH570235 C 0 I 22 e canFam3.chr10 46082893 438 - 69331447 I e proCoq1.NW_012136747v1 5073602 474 - 6317780 I e micMur3.chr7 5709659 486 + 108171978 I a score=57596.000000 s hg38.chr22_GL383582v2_alt 73160 4 + 162811 CAGG s panTro5.chr22 28853505 4 + 37823149 CAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128146 4 + 50109623 CAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150091 4 + 4464012 CAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646630 4 - 115148730 CAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261913 4 + 92844088 CAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87606918 4 - 96509753 CAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098633 4 - 13098629 CAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065176 4 - 4483953 CAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24695945 4 + 33263144 CAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970121 4 - 14338769 CAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913449 4 + 1946073 CAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1942936 4 - 2117846 CAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857721 4 - 16357246 CAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340472 4 - 1807191 CAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18983 4 + 5963231 CAGG i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82810932 4 + 104043685 TAGG i mm10.chr15 C 0 I 572 s dasNov3.JH570235 55499 4 + 1056298 CAGG i dasNov3.JH570235 I 22 C 0 e canFam3.chr10 46082893 438 - 69331447 I e otoGar3.GL873526 36284910 260 - 42659167 I e proCoq1.NW_012136747v1 5073602 474 - 6317780 I e micMur3.chr7 5709659 486 + 108171978 I a score=355480.000000 s hg38.chr22_GL383582v2_alt 73164 42 + 162811 ----CCAGC--------------------------------------------------------AGTT---------GAGCTAATGGGCA-C------------------------------CTACCTCCAAGAAC------------------------ACAGA---------------------- s panTro5.chr22 28853509 42 + 37823149 ----CCAGC--------------------------------------------------------AGTT---------GAGCTAATGGGCA-C------------------------------CTACCTCCAAGAAC------------------------ACAGA---------------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128150 42 + 50109623 ----CCAGC--------------------------------------------------------AGTT---------GAGCTAATGGGCA-C------------------------------CTACCTCCAAGAAC------------------------ACAGA---------------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150095 42 + 4464012 ----CCAGC--------------------------------------------------------AGCT---------GAGCTAATGGGCA-C------------------------------CTACCTCCAAGAAC------------------------ACAGA---------------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646634 43 - 115148730 ----CCAGC--------------------------------------------------------AGCT---------GAGCTAATGGGCACC------------------------------CTACCTCCAGGAAC------------------------ACAGA---------------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261917 42 + 92844088 ----CCAGC--------------------------------------------------------AGCT---------GAGCTAATGGGCG-C------------------------------CTACCTCCAGGAAC------------------------ACAGA---------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87606922 42 - 96509753 ----CCAGC--------------------------------------------------------AGCT---------GAGCTAATGGGCG-C------------------------------CTACCTCCAGGAAC------------------------ACAGA---------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098637 42 - 13098629 ----CCAGC--------------------------------------------------------AGCT---------GAGCTAATGGGCG-C------------------------------CTACCTCCAGGAAC------------------------ACAGA---------------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065180 42 - 4483953 ----CCAGC--------------------------------------------------------AGCT---------GAGCTAATGGGCA-C------------------------------CTCCCTCCAGGAAC------------------------ACAGA---------------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24695949 42 + 33263144 ----CCAGC--------------------------------------------------------AGCT---------GAGCTAATGGGCA-C------------------------------CTACCTCCAGGAAC------------------------ACAGA---------------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970125 42 - 14338769 ----CCAGC--------------------------------------------------------AGCT---------GAGCTAATGGGCA-C------------------------------CTCCCTCCAGGAAC------------------------ACAGA---------------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913453 42 + 1946073 ----CCAGC--------------------------------------------------------AGCT---------GAGCTAATGGGCA-C------------------------------CTACCTCCAGGAAC------------------------ACAGA---------------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1942940 42 - 2117846 ----CCAGC--------------------------------------------------------AGCT---------GAGCTAATGGGCA-G------------------------------CTACCTCCAGGAAC------------------------ACAGA---------------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857725 41 - 16357246 ----CCAGC--------------------------------------------------------AGCT---------GAGCGAATGGGCA-G------------------------------CTACCTCCA-GAAC------------------------ATGGA---------------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340476 39 - 1807191 ----CCAGC--------------------------------------------------------AGCT---------GAGCTAATGGGCA-G------------------------------CTACCTCCAGGAAC------------------------A---A---------------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 18987 42 + 5963231 ----CCAGC--------------------------------------------------------AGTT---------GAGCTAATGGGCA-G------------------------------CTACCTCCAGGAAC------------------------ACAGA---------------------- i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 55503 187 + 1056298 CTCCCCAGCCCTCACCCCACACAGGAGTCTCTCTACTGGTCTGGCTCTGGTTTTCCTGAGGCCAGGGCTGCCAGAAAAGGGGTAAGGGGCA-TTAATTGTTCCTCATACTGTCCCTGATGCCACCTCCCCCAGGAACCAAAGGCTCTTTCTAAATGTGGCAACAAATGGACATCAATGAACAGCCAGA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I e otoGar3.GL873526 36284910 260 - 42659167 I e proCoq1.NW_012136747v1 5073602 474 - 6317780 I e micMur3.chr7 5709659 486 + 108171978 I a score=1300848.000000 s hg38.chr22_GL383582v2_alt 73206 123 + 162811 AGGGTG---TCATCTTGTTGGGGCTGCAGGATGCCCGTGTGAATCAAGGCCA----------ATGCCCACACGTACCCT-GCCAGGCTCTGCTCAAGGAGG---GGACAGGGCAGGGTTTGCCCTCTTTACCAATACACA s panTro5.chr22 28853551 123 + 37823149 AGGGTG---TCATCTTGTTGGGGCTGCAGGATGCCCGTGTGAATCAAGGCCA----------ATGCCCACACGTACCCT-GCCAGGCTCTGCTCAAGGAGG---GGACAGGGCAGGGTTTGCCCTCTTTACCAATACACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128192 123 + 50109623 AGGGTG---TCATCTTGTTGGGGCTGCAGGATGCCCGTGTGAATCAAGGCCA----------ATGCCCACACGTACCCT-GCCAGGCTCTGCTCAAGGAGG---GGACAGGGCAGGGTTTGCCCTCTTTACCAATACACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150137 123 + 4464012 AGGGTG---TCATCTTGTTGGGGTTGCAGGATGCCCGTGTGAATCAAGGCCA----------ATGCCCACAAGTACCCT-GCCAGGCTCTGCTCAAGGAGG---GAACAGGGCAGGGTTTGCCCTCTTTACCGATACACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646677 123 - 115148730 AGGGTG---TCATCTTGTTGGGGTTGCAGGATGCCCATGTGAATCAAGGTCA----------ATGCCCACACGTACCCT-GCCAGGCTCTGCTCAAGGAGG---GGACAGGGCAGGGTTTGCCCTCTTTACCAACACACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84261959 123 + 92844088 AGGGTG---TCATCTTGTTGGGGTTGCAGGATGCCCATGGGAATCAAAGTCA----------ATGCCCACAAGTACCCT-GCCAGGCTCTGCTCATGGAGG---GGACAGGGCAGGGTTTGCCCTCTTTACGAGTACAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87606964 123 - 96509753 AGGGTG---TCATCTTGTTGGGGTTGCAGGATGCCCGTGGGAATCAAAGTCA----------ATGCCCACAAGTACCCT-GCCAGGCTCTGCTCATGGAGG---GGACAGGGCAGGGTTTGCCCTCTTTACGAGTACAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098679 123 - 13098629 AGGGTG---TCATCTTGTTGGGGTTGCAGGATGCCCGTGGGAATCAAAGTCA----------ATGCCCACAAGTACCCT-GCCAGGCTCTGCTCATGGAGG---GGACAGGGCAGGGTTTGCCCTCTTTACGAGTACAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065222 123 - 4483953 AGCGTG---TCATCTTGTTGGGGTTGCAGGATGCCCGTGGGAATCAAAGTCA----------ATGCCCACAAGTACCCT-GCCAGGCTCTGCTCATGGAGG---GGACAGGGCAGGGTTTGCCCTCTTTACGAGTACAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24695991 123 + 33263144 AGGGTG---TCATCTTGTTGGGGTTGCAGGATGCCCATGGGAATCAAAGTCA----------ATGCCCACACGTACCCT-GCCAGGCTCTGCTCATGGAGG---GGACAGGGCAGGGTTTGCCCTCTTTACGAGTACAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970167 123 - 14338769 AGGGTG---TCATCTTGTTGGGGTTGCAGGATGCCCGTGGGAATCAAAGTCA----------ATGCCCACAAGTACCCT-GCCAGACTCTGCTCATGGAAG---GGACAGGGCAGGGTTTGCCCTCTTTACGAGTACAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913495 123 + 1946073 AGGGTG---TCATCTTGTTGGGGTTGCGGGATGCCCGTGGGAATCAAGTTCA----------ATGCCCACACGTACCCT-GTCAGGCTCTGCTCATGGAGG---GGACAGGGCAGGGTTTGCCCTCTTTACGAGTACACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1942982 120 - 2117846 AGGGCA---TCATCTTGCTGGGGTTGCAGGATGCCTGTGTAAATCAAGGTCA----------ATGCCCACACATACCCT-GCCAGGCTCTGCTCATAGAGG---GGACTGGGCAGGGTTTAC---CCTTACCAGTATATA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857766 123 - 16357246 AGGGCA---TCATCTCACTGGGGTTGCAGGATGCCCGTGTAAATCAAGGTCA----------ATGCCCACACATACCCT-GCCAGGCTCTGCTCGTAGATG---GGACTAGGCAGGGTTTGCCCTCCTTACCAGTACATA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340515 123 - 1807191 AGGGCA---TCATCTTGCTGGGGTTGCAGGATGCCTGTGTAAATCAAGGTCA----------ACGCCCACACATACCCT-GCCAGGCTCCGCTCATAGAGG---GGACTGGGCAGGGTTTGCCCTCCTTACCAGTATATA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19029 123 + 5963231 AGGGCA---TCATCTTGCTGGGGTTGCAGGATGCCCATGTAAATGAAGGTCA----------ATGCCCACACATACCCT-GCCAGGCTCCACTCGTAGAGG---GGACTGGGCAGAGTTTGCCCTCCTTACCAGTATATA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36285170 104 - 42659167 AGGGTGGCATCATCTTGCTG--------GGATGTCTGTGTGAACTGAGTCAG----------ATGCCCATGTGCACTGTAGCCAGGCTCTGTTCATGGAGGGAAGGACAGAGCAGGGTTTGC------------------ i otoGar3.GL873526 I 260 C 0 s dasNov3.JH570235 55690 136 + 1056298 GGGGTA---TAATCTTGCTGGGGATCCAGGACAACTGTAGGACCAAGGGACAGATCCCCCCCACACACACACACACACT-TAAAGGCTGAGGTTGTGGGGGAAGAGACAGGGCAGGATTTGTCCTCCCCTCCAGCACTGG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I e proCoq1.NW_012136747v1 5073602 474 - 6317780 I e micMur3.chr7 5709659 486 + 108171978 I a score=30600.000000 s hg38.chr22_GL383582v2_alt 73329 2 + 162811 GC s panTro5.chr22 28853674 2 + 37823149 GC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128315 2 + 50109623 GC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150260 2 + 4464012 GC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646800 2 - 115148730 GC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262082 2 + 92844088 GC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607087 2 - 96509753 GC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098802 2 - 13098629 GC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065345 2 - 4483953 GC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696114 2 + 33263144 GC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970290 2 - 14338769 GC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913618 2 + 1946073 GC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1943102 2 - 2117846 GC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857889 2 - 16357246 GC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340638 2 - 1807191 GC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19152 2 + 5963231 GC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5074076 2 - 6317780 GC i proCoq1.NW_012136747v1 I 474 C 0 s dasNov3.JH570235 55826 2 + 1056298 GC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I e otoGar3.GL873526 36285274 0 - 42659167 C e micMur3.chr7 5709659 486 + 108171978 I a score=507552.000000 s hg38.chr22_GL383582v2_alt 73331 40 + 162811 ---AGTCTTGGGCCTGCACCCCAATCTTGCTCATTACTCAGAA s panTro5.chr22 28853676 40 + 37823149 ---AGTCTTGGGCCTGCACCCCAATCTTGCTCATTACTCAGAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128317 40 + 50109623 ---AGTCTTGGGCCTGCACCCCAATCTTGCTCATTACTCAGAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150262 40 + 4464012 ---AGTCTTGAGCCTGCACCCCAATCTTGCTCATTACTCAGAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646802 40 - 115148730 ---AGTCTTGGGCCTGCACCCCAATCTTGCTCATTACTCAGAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262084 37 + 92844088 ---AGTCTTGGGCCTGCACCCCAATCTTGCTCATTACTC---A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607089 37 - 96509753 ---AGTCTTGGGCCTGCACCCCAATCTTGCTCATTACTC---A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098804 37 - 13098629 ---AGTCTTGGGCCTGCACCCCAATCTTGCTCATTACTC---A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065347 40 - 4483953 ---AGTCTTGGGCCCGCACCCCAATCTTGCTCATTACTCAGAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696116 40 + 33263144 ---AGTCTTGGGCCTGCACCCCAATCTTGCTCATTACTCAGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970292 40 - 14338769 ---AGTCTTGGGTCTGCACCCCAATCTTGCTCATTACTCAGAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913620 40 + 1946073 ---AGTCTTGGGCCTGCACCCCAATCTTGCTCATTACTCAGAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1943104 40 - 2117846 ---AGTCTTGGGCCTGCACCCCAATCTTATTCATTACTCAGAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857891 37 - 16357246 ---AGTCTTGGGCCTGCACCCCAATCTTGTTCATTACTC---A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340640 40 - 1807191 ---AGTCTTGGGCCTGCACCCCAAGCTTGTTCATTACTCAGAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19154 40 + 5963231 ---AGTCTTGGGCCTGCACCCCAATCTTGTTCATTACTCAGAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5710145 40 + 108171978 ---AGTCTTGGGCCTGCACCCCAATCTCGCTAATTACTCGGAA i micMur3.chr7 I 486 C 0 s proCoq1.NW_012136747v1 5074078 40 - 6317780 ---AGTGTTGGGCCTGCGCCCCAGTCTCGCTAATTACTCAGAA i proCoq1.NW_012136747v1 C 0 I 208 s otoGar3.GL873526 36285274 31 - 42659167 ------------ACTGCACCCTAGTCATGCTCATTATTCAGAA i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 55828 36 + 1056298 ACAGGCTTTTAAACAGCTGGCC---CTTCTTTGCTATTC---- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I a score=245385.000000 s hg38.chr22_GL383582v2_alt 73371 26 + 162811 GAACAGGACCCCACACCAGCTCC------CCA s panTro5.chr22 28853716 26 + 37823149 GAACAGGACCCCACACCAGCTCC------CCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128357 26 + 50109623 GAACAGGACCCCACACCAGCTCC------CCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150302 26 + 4464012 GAACAGGACCCCACACCAGCTCC------CCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646842 26 - 115148730 GAAGAGGACACTACACCAGCTCC------CCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262121 26 + 92844088 GAACAGGACCCCACACCAGCTCC------CCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607126 26 - 96509753 GAACAGGACCCCACACCAGCTCC------CCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098841 26 - 13098629 GAACAGGACCCCACACCAGCTCC------CCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065387 26 - 4483953 GAACAGGACCCCACACCAGCTCC------CCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696156 26 + 33263144 GAACAGGACCCCACACCAGCTCC------CCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970332 26 - 14338769 GAACAGGACCCCACACCAGCTCC------CCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913660 26 + 1946073 GAACAGGACCCCACACCAGCTCC------CCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1943144 28 - 2117846 GAACAGGACCCCACACCAGCCCCCT----CAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857928 28 - 16357246 GAACAGGACCCCACACCAGCCCCCA----CCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340680 32 - 1807191 GAACAGGACCCCACACCGCCCCCCAACCCCCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19194 27 + 5963231 GAACAGGACCCCACAGCAGCCCCAG-----AA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5710185 24 + 108171978 CAGCAGG--CCCGTACCAGCTCC------CCA i micMur3.chr7 C 0 I 203 s otoGar3.GL873526 36285305 24 - 42659167 TAGCAGG--CTTGCCCTAGCCCT------CCA i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 55864 8 + 1056298 ---------------CCAACCTT--------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I e proCoq1.NW_012136747v1 5074118 208 - 6317780 I a score=1764880.000000 s hg38.chr22_GL383582v2_alt 73397 168 + 162811 GTGAAGAATGAAGCACATGTCAGCAGCCAGGGTCTGCCTGGCCAGTTGGCTCTGCGAGCTGCTACTTGTGGGCCCCTCCC-------TGGGGCGCGTGGTGGCCCAGGCAGCGGCAGTTCCTCAGCACCTGCAGCCTGGGGCTCTGCCCTCTATAGCCTTC----------GTGTTCCTCAGGTC- s panTro5.chr22 28853742 168 + 37823149 GTGAAGAATGAAGCACATGTCAGCAGCCAGGGTCTGCCTGGCCAGTTGGCTCTGCGAGCTGCTACTTGTGGGCCCCTCCC-------TGGGGTGCGTGGTGGCCCAGGCAGCGGCAGTTCCTCAGCACCTGCAGCCTGGGGCTCTGCCCTCCACAGCCTTC----------CTGTTCCTCAGGTC- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128383 168 + 50109623 GTGAAGAATGAAGCACATGTCAGCAGCCAGGGTCTGCCTGGCCAGTTGGCTCTGCGAGCTGCTACTTGTGGGCCCCTCCC-------TGGGGTGCGTGGTGGCCCAGGCAGCGGCAGTTCCTCAGCACCTGCAGCCTGGGGCTCTGCCCTCCACAGCCTTC----------CTGTTCCTCAGGTC- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150328 168 + 4464012 GTGAAGAATGAAGCACATGTCAGCAGCCAGGGTCTGCCTGGCCAGTCGGCTCTGTGAGCTGCTACTTGTGGGCCCCTCCC-------TGGGGTGCGTGGTGGCCGAGGCAGCGGCAGTTCCTCAGCACCTGCAGCCTGGGGCTCTGCCCTCCACAGCCTTT----------GTGTTCCTCAGGTC- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106646868 168 - 115148730 CTGAAGAATGAAGCACACATCAGCAACTAGGGTCTGCCTGGCCAGTCGGCTCTGCGAGCTGCTACTTGCGGGCCCCTCCC-------TGGGGTGCGTGGTGGCCCAAGCAGCCGCAGTTCTTCAGCACCTGCAGCCTGGGGCTCTGCCCTCCACAGCCTTC----------GTGTTCCCCAGGTC- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262147 178 + 92844088 CTGAAGAATGAAGCGTACGTCAGCAGCCAGGGTCTGCCTGGCCAGTTGACTCTGTGAGCTGCTACCTGTGGGCCCCTCCC-------TGGGGTGCATGATGGCCCAGGCAGCAGCAGTTCTTCAGCACCTGCAGCATGGGGCTTTGCCCTCCACAGCCTTCCCAACAGGGAGTGTTCCCCAGGTC- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607152 178 - 96509753 CTGAAGAATGAAGCGTACGTCAGCAGCCAGGGTCTGCCTGGCCAGTTGACTCTGTGAGCTGCTACCTGTGGGCCCCTCCC-------TGGGGTGCATGATGGCCCAGGCAGCAGCAGTTCTTCAGCACCTGCAGCATGGGGCTTTGCCCTCCACAGCCTTCCCAACAGGGAGTGTTCCCCAGGTC- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7098867 178 - 13098629 CTGAAGAATGAAGCGTACGTCAGCAGCCAGGGTCTGCCTGGCCAGTTGACTCTGTGAGCTGCTACCTGTGGGCCCCTCCC-------TGGGGTGCATGATGGCCCAGGCAGCAGCAGTTCTTCAGCACCTGCAGCATGGGGCTTTGCCCTCCACAGCCTTCCCAACAGGGAGTGTTCCCCAGGTC- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065413 178 - 4483953 CTGAAGAATGAAGCGTACGTCAGCAGCCAGGGTCTGCCTGGCCAGTTGACTCTGTGAGCTGCTACCTGTGGGCCCCTCCC-------TGGGGTGCATGATGGCCCAGGCAGCAGCAGTTCTTCAGCACCTGCAGCATGGGGCTTTGCCCTCCACAGCCTTCCCAACAGGGAGTGTTCCCCAGGTC- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696182 178 + 33263144 CTGAAGAATGAAGTGTACGTCAGCAGCCAGGGTCTGCCTGGCCAGTTGACTCTGTGAGCTGCTACCTGTGGGCCCCTCCC-------TGGGGTGCATGATGGCCCAGGCAGCAGCAGTTCTTCAGCACCTGCAGCATGGGGCTCTGCCCTCCACAGCCTTCCCAACAGGGAGTGTTCCCCAGGTC- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970358 178 - 14338769 CTGAAGAATGAAGCGTACGTCAGCAGCCAGGGTCTGCCTGGCCAGTTGACTCTGTGAGCTGCTACCTGTGGGCCCCTCCC-------TGGGGTGCACGATGGCCCAGGCATCAGCAGTTCTTCAGCACCTGCAGCATGGGGCTTTGCCCTCCACAGCCTTCCCAACAGGGAGTGTTCCCCAGGTC- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913686 178 + 1946073 CTGAAGAATGAAGCGCACGTCAGCAGCCAGGGTCTGCCTGGCCAGTCGACTCTGTGAGCTGCTACCTGTGGGCCCCTCCC-------AGGGGTGCATGGTGGCCCAGGCAGCAGCAGTTTTTCAGCACCTGCAGCCTGGGGCTCTGCCCTTCACAGCCTTCCCAACAGGGAGTGTTCCCTAGGTC- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1943172 177 - 2117846 CCAAAGAATGAAGCACATATCAGCACCCAGGGTCTGCCTGGCCACTTGGCTCTGTGTGCTACTACCTGTGGGCCCCTCCC-------TGGGGTGTGTGGTGGCACAGGCATAAGCAGTTCTTCAGCACCTGCGGTCTGTGGCTCTGCCCTCCACAGCCTTCCCAACGGGGAGTGTT-CCCAGGTC- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8857956 178 - 16357246 CCAAAGAATGAAGCACACATCAGTACCCAGGGTCTGCCTGGCCACTTGGCTCTGTGTGCTACTACCTGCGGGCCCCTCCC-------TGGGGTGTGTGGTGGCCCAGGCATCAGCAGTTCTTTAGCACCTGTCGTCTGGGGCTCTGCCCTCCACAGCCTTCCCAACGGGGAGTGTTCCCCAGGTC- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340712 178 - 1807191 CCAAAGAATGATGCACACATCAGCACGCAGGGTCTGCCTGGCCACTTGGCTCCATGTGCTACTACCTGCGGGCGCCTCCC-------TGGGGTGTGTGGTGGTCCAGGCATCAGCAGTTCTTCAGCACCTGTTGTCTGCGGCTCTGCCCTCCACAGCCTTCCCAAAGGGGAGTGTTCCCCAGGTC- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19221 178 + 5963231 CTAAAGAATGAAGCACACATCAGCACCCAGGGTCTGCCTGGCCACTTGGCTCTGTGTGCTACTACCTGCGGGCCCCTCCC-------TGGGGTGTGTGGTGGCCCAGGCATCAGCAGCTCTTCAGCACCTGTGGTCTGCGGCTCTCCCCTCCACAGCCTTCCCAACAGGGAGTGTTCCCCAGGTC- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36285329 150 - 42659167 CCTCAGGATGAAGCC----TCAGCACTCAGGGTCTGCCTGGCCAGGTGGTTC---ATGCTGCTGGCCACGGGCCCCTCCT-------GGGAGTACCATATGACCCAG-----------------GTACCCCTGGCCTG-GGCTCTGCCCTC--CAGCCTTC-CAATGGGGAGCTTTCCCCAGGGT- i otoGar3.GL873526 C 0 I 1 s dasNov3.JH570235 55872 169 + 1056298 ----GGGATGATGCATAACTC----------GTTGTCTTGGCCCGTGGACTGTGTGTCATTGACCTCAAGACCCCCTGGCAGCCAAAAGGGGTGCCTGATGGTCCAAACAACCGCAGGCCTTCAGCACTCCCA-CCTTGGACTCCAACCTC--CAGTCAGTCCAATAGGGACCTTTTCCCAGGGTC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I e proCoq1.NW_012136747v1 5074118 208 - 6317780 I e micMur3.chr7 5710209 203 + 108171978 I a score=334449.000000 s hg38.chr22_GL383582v2_alt 73565 29 + 162811 TGATGACTAGA--------------CCAGCCCAAACACACGAT s panTro5.chr22 28853910 29 + 37823149 TGATGACTAGA--------------CCAGCCCAAACACACGAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128551 29 + 50109623 TGATGACTAGA--------------CCAGCCCAAACACACGAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150496 29 + 4464012 TGATGACTAGA--------------CCAGCCCAAACACACGAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647036 29 - 115148730 TGATGACTAGA--------------CCAGCCCAAACACACGAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262325 29 + 92844088 TGACGACTAGA--------------CTAGCCCAAACACATGAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607330 29 - 96509753 TGACGACTAGA--------------CTAGCCCAAACACATGAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099045 29 - 13098629 TGACGACTAGA--------------CTAGCCCAAACACATGAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065591 29 - 4483953 TGACGACTAGA--------------CTAGCCCAAACACATGAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696360 29 + 33263144 TGACGACTAGA--------------CTAGCCCAAACACATGAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970536 29 - 14338769 TGACGACTAGA--------------CTAGCCCAAACACATGAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913864 29 + 1946073 TGACAACTAGA--------------CCAGCCCAAACACATGAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1943349 29 - 2117846 TGATGACTAGA--------------TCAGCCCTAACACATGAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8858134 29 - 16357246 TGATGACTATA--------------TCAGCCCCAACACATGAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340890 29 - 1807191 TGATGACTAGA--------------TCAGCCCTAACACATGAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19399 15 + 5963231 TGATG----------------------------AATACATGAT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5074326 29 - 6317780 TGATGACTAGA--------------CTGGCCCAAACACATGGT i proCoq1.NW_012136747v1 I 208 C 0 s otoGar3.GL873526 36285480 43 - 42659167 TGATGACTGGATGACTAGGTTGGGGCTGGCCCAAACACACTGT i otoGar3.GL873526 I 1 C 0 s dasNov3.JH570235 56041 29 + 1056298 TGATGATTAGA--------------TTGGCCCAAACACAAGAT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I e micMur3.chr7 5710209 203 + 108171978 I a score=845106.000000 s hg38.chr22_GL383582v2_alt 73594 65 + 162811 ATCCTG-AATGTAATGGGA----CCCTAACTTTTCAAGAGTTACTTT-AAAAAAGTTGTTCCTTCAGTAGG s panTro5.chr22 28853939 65 + 37823149 ATCCTG-AATGTAATGGGA----CCCTAACTTTTCAAGAGTTACTTT-AAAAAAGTTGTTCCTTCAGTAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128580 65 + 50109623 ATCCTG-AATGTAATGGGA----CCCTAACTTTTCAAGAGTTACTTT-AAAAAAGTTGTTCCTTCAGTAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150525 65 + 4464012 ATCCTG-AATGTAATGGGA----CCCTAACTTTTCAAGAGTTACTTT-AAAAAAGTTGTTCCTTCAGTAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647065 65 - 115148730 ACCCTG-AATGTAATGGGA----CCCTAACTTTTCAAGAGTTACTTC-AAAAAAGTTGTTCCTTCAGTAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262354 65 + 92844088 ATCCTG-AATGTAACGGGA----CTCTAACTTTTCAAGAGTTGCTTT-AAAAATATTGTTCCTTCAGTAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607359 65 - 96509753 ATCCTG-AATGTAATGGGA----CTCTAACTTTTCAAGAGTTGCTTT-AAAAATATTGTTCCTTCAGTAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099074 65 - 13098629 ATCCTG-AATGTAATGGGA----CTCTAACTTTTCAAGAGTTGCTTT-AAAAATATTGTTCCTTCAGTAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065620 65 - 4483953 ATCCTG-AATGTAATGGGA----CTCTAACTTTTCAAGAGTTGCTTT-AAAAATATTGTTCCTTCAGTAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696389 65 + 33263144 ATCCTG-AATGTAATGGGA----CTCTAACTTTTCAAGAGTTGCTTT-AAAAGAATTGCTCCTTCAGTAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970565 65 - 14338769 ATCCTG-AATGTAATGGGA----CTCCAACTTTTCAAGAGTTGCTTT-AAAAATATTGTTCCTTCAGTAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 913893 66 + 1946073 ATCCTG-AATGTAATGGGA----CCCTAACTTTTCAAGAGCTACTTCAAAAAAAATTGTTCCTTCAGTAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1943378 65 - 2117846 ATCCTG-AATGTACTGGGA----CCCTAACTTTTCAAGAATTACTTT-AACAAAATTGTTCCTTCAGCAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8858163 64 - 16357246 ATCCTG-AATGTACT-GGA----TCCTAACTTTTCAAGAATTACTTT-AACAGAATTGTTCCTTCAGCAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340919 65 - 1807191 ATCCTG-AATGTACTGGGA----CCCTAACTTTTCAAGAATTACTTT-AACAAAATTGTTCCTTCAGCAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19414 65 + 5963231 ATCCTG-AATGTAGTGGGA----CCCTAACTTTTCAAGAATTACTTT-AACAAAATTGTTCCTTCAGCAGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5710412 65 + 108171978 ATCCTG-AATGTGATGGGA----CCCCAGCTTTCCAAGAGTGACCTT-TTAAAAACTGTTCCTTCAGTAGG i micMur3.chr7 I 203 I 466 s proCoq1.NW_012136747v1 5074355 65 - 6317780 ATCCTG-AATGTGATGGGA----CCCCAACTTCTCAAGAGTGACTTT-TTAAAAACTGTTCCTTCAGTAGG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36285523 69 - 42659167 GTCCTGAAATGTGATGGGACCCTCCCTACCTTCCCAAGTATTAC-TT-TTAAAAACTCTTCCTTCAGTAGG i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 56070 60 + 1056298 AACCTA-AATGCAATGAGA-----TCAAACTTCACAAGGAATA-----AAAAGGTTTCTGAATTTAGTAAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I a score=136325.000000 s hg38.chr22_GL383582v2_alt 73659 15 + 162811 GAAATTAGGAAGGAA s panTro5.chr22 28854004 15 + 37823149 GAAATTAGGAAGGAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128645 15 + 50109623 GAAATTAGGAAGGAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150590 15 + 4464012 GAAATTAGGAAGGAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647130 15 - 115148730 GAAATTAGGAAGGaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262419 11 + 92844088 GAAATTAGGAA---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607424 11 - 96509753 GAAATTAGGAA---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099139 11 - 13098629 GAAATTAGGAA---- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065685 11 - 4483953 GAAATTAGGAA---- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696454 15 + 33263144 GAAATTAGGAAGGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970630 15 - 14338769 GAAATTAGGAAGGAA i manLeu1.NW_012102031v1 C 0 I 10 s colAng1.NW_012115588v1 913959 15 + 1946073 GAAATTAGGAAGGAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1943443 15 - 2117846 GAAATTAAGAAGGAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8858227 15 - 16357246 GAAATTAAGAAGGAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340984 15 - 1807191 GAAACTAAGAAGGAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19479 15 + 5963231 GAAATTAAGAAGGAA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5074420 15 - 6317780 AAGAATAGGAAGGAA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36285592 15 - 42659167 AGAAATAGGAAGGAA i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 56130 14 + 1056298 GAGAAGAAGAAAAG- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I e micMur3.chr7 5710477 466 + 108171978 I a score=28158.000000 s hg38.chr22_GL383582v2_alt 73674 20 + 162811 GGAAAAT------TCTCTAA------GCacta---- s panTro5.chr22 28854019 20 + 37823149 GGaaaat------tctctaa------gcacta---- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128660 20 + 50109623 GGaaaat------tctctaa------gcatta---- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150605 20 + 4464012 GGaaaat------tctctaa------gcacta---- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647145 20 - 115148730 ggaaaat------tctctaa------gcacta---- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262430 14 + 92844088 GGAAAAT------TCTAGAA---------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607435 14 - 96509753 GGAAAAT------TCTAGAA---------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099150 14 - 13098629 GGAAAAT------TCTAGAA---------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065696 14 - 4483953 GGAAAAT------TCCAGAA---------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696469 10 + 33263144 ----AAT------TCTAGAA---------------- i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 913974 16 + 1946073 ----AAT------TCTCTAAGCACTA---------- i colAng1.NW_012115588v1 C 0 I 27 s calJac3.chrUn_GL286373 1943458 19 - 2117846 GGAAAAtaagcactcccta----------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8858242 19 - 16357246 GGAAAAtaagcactcccta----------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1340999 19 - 1807191 GGAAAAtaagcactcccta----------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19494 19 + 5963231 GGAAAAtaagcactcccta----------------- i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5074435 20 - 6317780 GGaaaat------tctctca------gcaatt---- i proCoq1.NW_012136747v1 C 0 I 4 s otoGar3.GL873526 36285607 20 - 42659167 AGAAAAT------TCTCCAa------gcactg---- i otoGar3.GL873526 C 0 I 4 s dasNov3.JH570235 56144 24 + 1056298 GGAATat------tctttaa------gcaccttcta i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I e micMur3.chr7 5710477 466 + 108171978 I e manLeu1.NW_012102031v1 13970645 10 - 14338769 I a score=27808.000000 s hg38.chr22_GL383582v2_alt 73694 6 + 162811 --tgtgcc s panTro5.chr22 28854039 6 + 37823149 --tgtgcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128680 6 + 50109623 --tgtgcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150625 6 + 4464012 --tgtgcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647165 6 - 115148730 --tgtgcc i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1943477 6 - 2117846 --tgtgcc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8858261 6 - 16357246 --tgtgcc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1341018 6 - 1807191 --tgtgcc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19513 6 + 5963231 --tgtgcc i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5074459 6 - 6317780 --cgtgcc i proCoq1.NW_012136747v1 I 4 C 0 s otoGar3.GL873526 36285631 6 - 42659167 --tgtgcc i otoGar3.GL873526 I 4 C 0 s dasNov3.JH570235 56168 6 + 1056298 gatgcg-- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I e micMur3.chr7 5710477 466 + 108171978 I e colAng1.NW_012115588v1 913990 27 + 1946073 I e manLeu1.NW_012102031v1 13970645 10 - 14338769 I e chlSab2.chr19 24696479 0 + 33263144 C e cerAty1.NW_011999588v1 4065710 0 - 4483953 C e macNem1.NW_012012688v1 7099164 0 - 13098629 C e macFas5.chr10 87607449 0 - 96509753 C e rheMac8.chr10 84262444 0 + 92844088 C a score=21833.000000 s hg38.chr22_GL383582v2_alt 73700 2 + 162811 ag s panTro5.chr22 28854045 2 + 37823149 ag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128686 2 + 50109623 ag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150631 2 + 4464012 ag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647171 2 - 115148730 ag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262444 2 + 92844088 AG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607449 2 - 96509753 AG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099164 2 - 13098629 AG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065710 2 - 4483953 AG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696479 2 + 33263144 AG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970655 2 - 14338769 AG i manLeu1.NW_012102031v1 I 10 C 0 s calJac3.chrUn_GL286373 1943483 2 - 2117846 aa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8858267 2 - 16357246 aa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1341024 2 - 1807191 aa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19519 2 + 5963231 aa i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5074465 2 - 6317780 ag i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36285637 2 - 42659167 ag i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 56174 2 + 1056298 ag i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I e micMur3.chr7 5710477 466 + 108171978 I e colAng1.NW_012115588v1 913990 27 + 1946073 I a score=293471.000000 s hg38.chr22_GL383582v2_alt 73702 23 + 162811 gccctgggctagaagctttacag s panTro5.chr22 28854047 23 + 37823149 gccctgggctagaaggtttacag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128688 23 + 50109623 gccctgggctagaaggtttacag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150633 23 + 4464012 gccctgggctagaagctttacag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647173 23 - 115148730 gccctgggttagaagctttacag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262446 23 + 92844088 GCGCTGGGCTAGAAGCTTTACAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607451 23 - 96509753 GCGCTGGGCTAGAAGCTTTACAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099166 23 - 13098629 GCGCTGGGCTAGAAGCTTTACAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065712 23 - 4483953 GCGCTGGGCTAGAAGCTTTACAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696481 23 + 33263144 GCGCTGGGCTAGAAGCTTCACAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970657 23 - 14338769 GCGCTGGGCTAGAAGCTTTACAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 914017 23 + 1946073 GCCCTGGGCTAGAAGCTTTACAG i colAng1.NW_012115588v1 I 27 C 0 s calJac3.chrUn_GL286373 1943485 23 - 2117846 gccctgggctagaagctttacag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8858269 23 - 16357246 gccctgggccagaagctttacag i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1341026 23 - 1807191 gccctgggctagaagctttacag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19521 23 + 5963231 gccctgggctagaagctttacag i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5074467 23 - 6317780 gcactgtgttagaagctttacag i proCoq1.NW_012136747v1 C 0 I 406 s otoGar3.GL873526 36285639 21 - 42659167 gcac--tatcagaaactttacag i otoGar3.GL873526 C 0 I 3 s dasNov3.JH570235 56176 23 + 1056298 gcaccatgctaagagccttagag i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I e micMur3.chr7 5710477 466 + 108171978 I a score=2389902.000000 s hg38.chr22_GL383582v2_alt 73725 274 + 162811 atattatatcacagta---------acgtggatctgcctgacccccatcttcaag----agagctaaagctcaggaaggcgacacatgtagcccaaagcgacgtggcc----agaggtggGACTGGGG-----------------CTTTCCCAACTGGGCCCTAGG-----------------------------GGCTG------CGTATGCTAGGGCATGGGGTG--TGGCTGA---GAGACGGCTGGGTCCCCGACAGTGAGCC-TGGGAGCAGCCCTGGTGC------CAGCCAGCCTGAGCAGCAGGAGCGACCTGCCGCCCCT---------GTGCTGAAGACTGTGAATTCTCTTTT-- s panTro5.chr22 28854070 274 + 37823149 atattatatcacagta---------acgtggacctgcctgacccccatcttcaag----agagctaaagctcaggaaggcgacacatgtagcccaaagcgacatggcc----agaggtgggactgggg-----------------CTTTCCCAACTGGGCCCTAGG-----------------------------GGCTG------CATATGCTAGGGCATGGGGTG--TGGCTGA---GAGATGGCTGGATCCCAGACAGTGAGCC-TGGGAGCAGCCCTGGTGC------CAGCCAGCCTGAGCAGCAGGAGTGACCTGCCGCCCCT---------GTGCTGAAGACTGTGAATTCTCTTTT-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128711 274 + 50109623 atattatatcacagta---------acgtggacctgcctgacccccatcttcaag----agagctaaagctcaggaaggcgacacatgtagcccaaagcgacatggcc----agaggtgggactgggg-----------------CTTTCCCAACTGGGCCCTAGG-----------------------------GGCTG------CATATGCTAGGGCATGGGGTG--TGGCTGA---GAGATGGCTGGATCCCAGACAGTGAGCA-TGGGAGCAGCCCCGGTGC------CAGCCAGCCTGAGCAGCAGGAGTGACCTGCCGCCCCT---------GTGCTGAAGACTGTGAATTCTCTTTT-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150656 274 + 4464012 atattatatcacagta---------acgtggacctgcctgacccccatcttcaag----agagctaaagctcaggaaggcgacacatgtagcccaaagcgacatggcc----agaggtgggactggga-----------------ctTTCCCAACTGGGCCCTAGG-----------------------------GGCTG------CATGTGCTAGGGCATGGGGCG--TGGCTGA---GAGATGGCTGGATCCCAGACAGTGAGCC-TGGGAGCAGCCCTGGTGC------CAGCCAGCCTGAGCAGCAGGAGTGACCTGCTGCCCCT---------GTGCTGAAGACTGTGAATTCTCTTTT-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647196 274 - 115148730 ataatatttcacagta---------atgtggacctgcctgacccccatcttcaag----agagctaaagctcaggaaggcgacacatgtagcccaaagcgacatggcc----agaggtgggactgggg-----------------CTTTCCCAACTGGGCCCTAGG-----------------------------GGCTG------CATGTCCTAGGGCATGGGGTG--TGGCTGA---GAGATGGCTGGATCCCAGACAGTGAGCC-TGGGAGCAGCCCTGGTGC------CAGCCAGCCTGAGCAGCAGGAGTGACCTGCCACCCCT---------GTGGTGAAGACTGTGAATTCTCTTTT-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262469 281 + 92844088 ATATTAGTTCACAGTGGATTAGTTCACGTGGACCTGCCTGACCCCCATCTTCA------AGAGCTGAAGCTCAGGAAGGCGACAGGTGTAGCCCAAAGCGATATGGCC----AGAGGTGGGACTGGGG-----------------CTTTCCTGACTGGGTCCTAGG-----------------------------AGCTG------CATGTCCTAGGGCATGGGGTG--TGGCTGA---GAGACAGCTGGACCCCAGACAGCGAGCC-TGGGAGCAGCCATGGTGC------CAGCTGGCCTGAGCAGCAGGAGTGACCTGCCGCCTCT---------ATGCTGAAGACTGTCAATTCTCTTTT-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607474 281 - 96509753 ATATTAGTTCACAGTGGATTAGTTCACGTGGACCTGCCTGACCCCCATCTTCA------AGAGCTGAAGCTCAGGAAGGCGACAGGTGTAGCCCAAAGCGATATGGCC----AGAGGTGGGACTGGGG-----------------CTTTCCTGACTGGGTCCTAGG-----------------------------AGCTG------CATGTCCTAGGGCATGGGGTG--TGGCTGA---GAGACAGCTGGACCCCAGACAGCGAGCC-TGGGAGCAGCCGTGGTGC------CAGCTGGCCTGAGCAGCAGGAGTGACCTGCCGCCTCT---------ATGCTGAAGACTGTCAATTCTCTTTT-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099189 256 - 13098629 ATATTAGTTCACAGTGGATTAGTTCACGTGGACCTGCCTGACCCCCATCTTGA------AGAGCTGAAGCTCAGGAAGGCGACAGGTGTAGCCCAAAGCGATATGGCC----AGAGGTGGGACTGGGG-----------------CTTTCCTGACTGGGTCCTAGG-----------------------------AGCTG------CATGTCCTAGGGCATGGGGTG--TGGCTGA---GAGACAGCTGGACCCCAGACAGCGAGCC-TGGGAGCAGCC-------------------------------GGAGTGACCTGCCGCCTCT---------ATGCTGAAGACTGTCAATTCTCTTTT-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4065735 281 - 4483953 ATATTAGTTCACAGTGGATTAGTTCACGTGGACCTGCCTGACCCCCATCTTCA------AGAGCTGAAGCTCAGGAAGGCGACAGGTGTAGCCCAAAGCGATATGGCC----AGAGGTGGGACTGGGG-----------------CTTTCCTGACTGGGTCCTAGG-----------------------------AGCTG------CATGTCCTAGGGCATGGGGTA--TGGCTGA---GAGACGGCTGGACCCCAGACAGCGAGCC-TGGGAGCAGCCGTGGTGC------CAGCTGGCCTGAGCAGCAGGAGTGACCTGCCGCCCCT---------ATGCTGAAGACTGTCAATTCTCTTTT-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696504 272 + 33263144 ATATTAGTTCACAGTG---------ACGTGGACCTGCCTGACCCCCATCTTCA------AGAGCTGAAGCTCAGGAAGGCGACAGGTGTAGCCCAAAGCGATATGGCC----AGAGGTGGGCCTGGGG-----------------CTTTCCTGACCGGGTCCTAGG-----------------------------AGCTG------CATGTCCTAGGGCACGGGGTG--TGGCTGA---GAGATGGCTGGACCCCAGACAGCGAGCC-TGGGAGCAGCCGTGGTGC------CAGCTGGTCTGAGCAGCAGGAGTGACCTGCCGCCCCT---------ATGCTGAAGACTGTCAATTCTCTTTT-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970680 281 - 14338769 ATATTAGTTCACGGTGGATTAGTTCACGTGGACCTGCCTGACCCCCATCTTCA------AGAGCTGAAGCTCAGGAAGGCGACAGGTGTAGCCCAAAGCGATATGGCC----AGAGGTGGGACTGGGG-----------------CTTTCCTGACTGGGTCCTAGG-----------------------------AGCTG------CATGTCCTAGGGCATGGGGTG--TGGCTGA---GACACGGCTGGACCCCAGACAGCGAGCC-TGGGAGCAGCCATGGTGC------CAGCTGGCCTGAGCAGCAGGAGTGACCTGCCGCCCCT---------ATGCTGAAGACTGTCAATTCTCTTTT-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 914040 274 + 1946073 ATATTAGTTCACAGTG---------ACGTGGACCTGCCTGACCCCCATCTTCAAG----AGAGCTGAAGCTCAGTAAGGCGACAGGTGTAGCCCAAAGCGACATGGCC----AGAGGTGGGACTGGGG-----------------CTTTTCTGACTGGGTCCTAGA-----------------------------AGCTG------GATGTCCTAGGGCATGGGGTA--TGGCTGA---GAGATGGCTGGAGCCCAGACAGTGAGCC-TGGGAGCAGCCGTGGTGC------CAGCTGGCCTGAGCAGCAGGAGTGACCTGCCGCCCCT---------ATGCTGAAGACTGTCAATTCTCTTTT-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1943508 263 - 2117846 atactatttcatagta---------acatggacctgcctgacccccaacttcaag----agagctcgagcccaggaagacgatatgtgtagcccaaagccatatggccagttagaggtgggactgTGG-----------------CCTTCCTGACTGG----TAGG-----------------------------GGCTG------CAAGTCCTAGGGCATGGGGTGTATAGCTGAGAGGAGATGGCCGTACCCCAGAGAGTGAGCC-TGGGAGCAGC-------------------------------AGAAATGACTTGCCACTCCTGTACTGAAGATGCTGAAGACTAACAGTTCTCTTTT-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8858292 265 - 16357246 acactatttcatatta---------acacagacctgcctgacccccaacttcaag----agagctcaagctcaggaaggcgacacgtgtagcccaaagccacatggccagttagaggtggGATTGTGG-----------------CTTTCCTGACTGGACCCTAGG-----------------------------GGCTG------CATGTTCTAGGGCACGAGGTG--TAGCTGAGAGGAGACGGCCGTACGCAAGACAGCGAGGC-TGGGAGCAGC-------------------------------AGAAGTGACTTGCCACTCCTGTACTGAAGATGCTGACGACTATCAGTTCTCTTTT-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1341049 265 - 1807191 atactatttcatagta---------acacggacctgcctgacccccaacttcagg----agagctcaagctcaggaaggcgacacgtgtagcccaaagccatatggccagttagaggtggGATTGTGG-----------------CTTTCCTGACTGGACCCTAGG-----------------------------GGCTG------CATGTCCTAGGGCATGAGGTG--TAGCTGAGAGGAGATGGCCGTACGCCAGACAGTGAGCC-TGGGAGCAGC-------------------------------AGAAGTGACTTGCCACTCCTGTACTGAAGATGCTGAAGACTATCAGTTCTCTTTT-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19544 265 + 5963231 atactatttcatagta---------acacggacctgcctgacccccaacttcaag----agagctcaagctcagggaggcgacacgcgtagcccaaagccatagggccagttagaggtggGATTGTGG-----------------CTTTCCTGACTGGACCCTAGG-----------------------------GGCTG------CATGTCCTAGGGCATGGGGTG--TAGCTGAGAGGAGATGGCCGTACCCCAGACAGTGAGCC-TGGGAGCAGC-------------------------------AGAAGTGACTTGCCACTCCTGTACTGAAGATGCTGAAGACTATCAGCTCTCTTTT-- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36285663 209 - 42659167 gtattctgtaagagc----------actgagac---cctgatccctatttgcaagatgaaaagctgaagcttgaggagataatatttgtagctcaaagccacatggct------------------------------------------------------------------------------------------------------------ggttcggggtg----gctgacacgagaAGGTTGTGCCCCAGACACTGAGCCACAGTGGCAGC-----TGT------CAAGTAG-------AGCATAA--GACCTGCCA-TCCT---------GTGCTGAAGACCAGTTGCTCCCTCTG-- i otoGar3.GL873526 I 3 C 0 s dasNov3.JH570235 56199 329 + 1056298 gcatccttgcatagta---------ac--------------ccctcatcttgaagatgtggag--gaggctcaggaagggaacaagtgtggcccaaggtcacatggctggtcaggggtaggactgggGGAGCAGATACAGGCAAAGCTCCTCAGATGGCCCCAAGGCTAGTCTTCGAACAATCACAGAGCTTCCTTGCTGTGTGGCCCTGTCCAACTGTGGGGGACA--TGGCTGAGTGAGGACAGCCATGCCCAGGGCAGCAAACC-AGGGAGCAGCTGCTCTGCCAGCTGCAGCTGGCACAAGCTGTACGAGCTAGCTGCCACTTCT---------GTGCTGGTGATTTTTAATATTCTCTTTA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46082893 438 - 69331447 I e proCoq1.NW_012136747v1 5074490 406 - 6317780 I e micMur3.chr7 5710477 466 + 108171978 I a score=1560954.000000 s hg38.chr22_GL383582v2_alt 73999 152 + 162811 AAAGAACATCACCTTGCTCCC-CAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAGGCTCCCTCAC---TTGTTCCCTCCC---TTCCCTTCTCGCT----------CACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCCGTGGC-----CTGAACCCGG------------ s panTro5.chr22 28854344 152 + 37823149 AAAGAACATCACCTTGCTCCT-CAGCTGCCAGCATCCAGGGTTTCGTCTCGGGCCAACACCTTCCCAGGCTCCCTCAC---TTGTTCCCTCCC---TTCCCTTCTAGGT----------CACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCCGTGGC-----CTGAACCCGG------------ i panTro5.chr22 C 0 C 0 s panPan2.chr22 41128985 152 + 50109623 AAAGAACATCACCTTGCTCCT-CAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCGGGCTCCCTCAC---TTGTTCCCTCCC---TTCCCTTCGAGGT----------CACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCCGTGGC-----CTGAACCCGG------------ i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3150930 150 + 4464012 AAAGAACATCACCTTGCTGCT-CAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAGGCTCCCTCAC---TTGTTCCCTCCC---TTCCCCTCT-GCT----------CACACTGTCCTTTCTGCTCCCC-TTG--GCCTCAGCCGTGGC-----CTGAACCCGG------------ i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647470 145 - 115148730 AAAGAACGTCACCTTGCTGCT--------CAGCATCCAGGGTTTTGTCTTGGGCCAACACCTTCCCAGGCTTCCTCAC---TTGTTCCCTCCC---TTCCCTTTTCGCT----------CACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCCGTGGC-----CTGAACCCGG------------ i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262750 155 + 92844088 AAAGAACGTCATCTTGCTGCT-CAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAGGCTCTCTCAC---TTGTTCCCTCCCCCATTCCCTTCTCGCT----------CACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCTGTGGC-----CTGAACCTGG------------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607755 155 - 96509753 AAAGAACGTCATCTTGCTGCT-CAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAGGCTCTCTCAC---TTGTTCCCTCCCCCATTCCCTTCTCGCT----------CACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCTGTGGC-----CTGAACCTGG------------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099445 155 - 13098629 AAAGAACGTCATCTTGCTGCT-CAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAGGCTCTCTCAC---TTGTTCCCTCCCCCATTCCCTTCTCGCT----------CACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCTGTGGC-----CTGAACCTGG------------ i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066016 155 - 4483953 AAAGAACGTCATCTTGCTGCT-CAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAGGCTCTCTCAC---TTGTTCCCTCCCCCATTCCCTTCTCGCT----------CACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATGTGTGGC-----CTGAACCTGG------------ i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696776 155 + 33263144 AAAGAACGTCATCTTGCTGCT-CAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAGGCTCTCTCAC---TTGTTCCCTCCCCCATTTCCTTCTCGCT----------CACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCTGTGGC-----CTGAACCTGG------------ i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13970961 155 - 14338769 AAAGAACGTCATCTTGCTGCT-CAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAGGCTCTCTCAC---TTGTTCCCTCCCCCATTCTCTTCTTGCT----------CACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCTGTGGC-----CTGAACCTGG------------ i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 914314 155 + 1946073 AAAGAACGTCATCTTGCTGCT-CAGCTGCCAGCATCCAGGATTTCGTCTTGGACCAACACCTTCCCAGGctctctcac---ttgttctctccctcattctcttctcgct----------cacactgtcctttctgctcCCCTTTG--GCCTCATCTGTGGC-----CTGAACCTGG------------ i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1943771 152 - 2117846 AAAGAACCACATCTTGCTGCT-CAGCTGCCAGCATCCAGGGTTTCGTCTTGGGTTAACACCTTCCCAGGCTCCCTCAC---TTGTTCCTTCGC---TTCCCTTCTCGCT----------CACACTGTCCTTTCTGCTCCTCTTCG--GCTTTATCCGTGGC-----CTGAACCCAG------------ i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8858557 155 - 16357246 AAAGAGCTACATCTTGCTGCT-CAGCTGCCAGCATCCAGGGTTTGGTCTTGGGTCAACGCCTTCCCAGGCTCCCTCACTTGTTGTTCCTTCGC---TTCCCTTCTCGCT----------CACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCCGTGGC-----CTGAACCCAG------------ i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1341314 154 - 1807191 AAAGAACCACACCTTGCTGCT-CAGCTGCCAGCATCCAGGGTTTCGTCTTGGGTCAACGCCTTCCCAGGCTCCCTCAC-TGTTGTTCCTTCGC---TTCCCTTCTCGCT----------CACACTGTCCTTTCCGCTCCCCTCTG--GCCTCATCCGTGGC-----CTGAATCCAG------------ i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19809 155 + 5963231 AAAGAACCACATCTTGCTGCT-CAGCTGCCAGCATCCAGAGTTTCGTCTTGGGTCAACGCCTTCCCAGGCTCCCTCACTTGTTGTTTCTTCAC---TTCCCTTCTCGCT----------CACACTGTCCTTTCTGCTCCCCTTCG--GCCTCATCCGTGGC-----CTGAACCCAG------------ i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36285872 115 - 42659167 AACAAAGGT-GTCTGGATGCTGGGGCAGCCTGAGTGCAGGG---AGTGCAGGGCT---------TCAGTCT---TCAC----TGTCCCTTGGC-------CTTGTGGCT-----------ATAC--CTCTTTATACTCCC----------------ATGGG-----CCGAACCTGG------------ i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46083331 134 - 69331447 aaaaaaaaGCATCTTAAAGTC-TGGCTGCCAGTGAGCAGGGTTTCACCTGGGGCCATGGCCTTCCAGGACTCCCTCTC--------------------------TCAGT----------CACACTCCCACCTTCCCTCCCCTTCAGTGTCCCCTCTGTGGC-----CTGAACCCGG------------ i canFam3.chr10 I 438 I 586 s dasNov3.JH570235 56528 167 + 1056298 ---AAAAGGCATCTAGGTCCT--AGGTGTCAGCATGCAAGCTCTGATGTGGGGTCAAAGCCTTCCAGTGG-----------CTGCTGCCCCCC---TTCTTCTTCCGGTTTCACAGATACTCACTCCCTTTCCTGCTCCACTTTG--GCTTCACCCAAGGTGAAGGCTGGGCCTGCCCATCTCAGCCA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e proCoq1.NW_012136747v1 5074490 406 - 6317780 I e micMur3.chr7 5710477 466 + 108171978 I a score=70126.000000 s hg38.chr22_GL383582v2_alt 74151 7 + 162811 GACGCCA s panTro5.chr22 28854496 7 + 37823149 GACGCCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41129137 7 + 50109623 GACGCCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3151080 7 + 4464012 GACGCCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647615 7 - 115148730 GATGCCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262905 7 + 92844088 GACGCCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607910 7 - 96509753 GACGCCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099600 7 - 13098629 GACGCCG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066171 7 - 4483953 GACGCCG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696931 7 + 33263144 GACGCCG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971116 7 - 14338769 GACGCCG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 914469 7 + 1946073 GCCGCCG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1943923 7 - 2117846 GATGCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8858712 7 - 16357246 GATGCCG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1341468 7 - 1807191 GATGCCG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 19964 7 + 5963231 GATGCCG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36285987 7 - 42659167 GACTCTG i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 56695 7 + 1056298 AAGGCTG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46083465 586 - 69331447 I e proCoq1.NW_012136747v1 5074490 406 - 6317780 I e micMur3.chr7 5710477 466 + 108171978 I a score=1642065.000000 s hg38.chr22_GL383582v2_alt 74158 118 + 162811 TCCTCGCGTCCTTCCACATCAGACTCCAAG---------CCTGCCTTTCCCAACTGCAGCAAAAACTCATCATCTCAACACCACTC-ACCCTGGCCAGGATTCGCCCAGAGCCCATTTCCTCatttct s panTro5.chr22 28854503 118 + 37823149 TCCTCACGTCCTTCCACATCAGACTCCAAG---------CCTGCCTTTCCCAACTGCAGCAAAAACTCATCATCTCAACACCACTC-ACCCTGGCCAGGATTCGCCCAGAGCCCATTTCCTCATTTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41129144 118 + 50109623 TCCTCACGTCCTTCCACATCAGACTCCAAG---------CCTGCCTTTCCCAACTGCAGCAAAAACTCATCATCTCAACACCACTC-ACCCTGGCCAGGATTCGCCCAGAGCCCATTTCCTCatttct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3151087 118 + 4464012 TCCTCACGTCCTTCCACATCAGACTCCAAG---------CCTGCCTTTCCCAACTGCAGCAAAAACTCATCATCTCAACACCACTC-ACCCTGGCCAGGATTCGCCCAGAGCCCATTTCCTCatttct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647622 118 - 115148730 TCCTCACGTCCTTCCACATCAGACTCCAAG---------CCTGCCTTTCCCAACTGCAGCAAAAGTTCATCATCTCAACACCACTC-ACCTTGGCCAGGATTCGCCCAGAGCCCATTTCCTCATTTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84262912 116 + 92844088 TCCTCATGTCCTTCCATAT--GACTCCAAG---------CCTGCCTTTTCCAATTGCAGCAAAAACTCATCATCTCAACACCACTC-ACTCTGGCCAGGATTTGCCCAGAGCCCATTTCCTCATTTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87607917 118 - 96509753 TCCTCATGTCCTTCCATATCAGACTCCAAG---------CCTGCCTTTTCCAATTGCAGCAAAAACTCATCATCTCAACACCACTC-ACTCTGGCCAGGATTTGCCCAGAGCCCATTTCCTCATTTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099607 118 - 13098629 TCCTCATGTCCTTCCATATCAGACTCCAAG---------CCTGCCTTTTCCAATTGCAGCAAAAACTCATCATCTCAACACCACTC-ACTCTGGCCAGGATTTGCCCAGAGCCCATTTCCTCATTTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066178 118 - 4483953 TCCTCATGTTCTTCCATATCAGACTCCAAG---------CCTGCCTTTTCCAATTGCAGCAAAAACTCATCATCTCAACACCACTC-ACTCTGGCCAGGATTTGCCCAGAGCCCATTTCCTCATTTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24696938 118 + 33263144 TCCTCATGTCCTTCCATATCAGACTCCAAG---------CCTGCCTTTTCCAATTGTAGCAAAAACTTATCATCTCAACACCACTC-ACTTTGGCCAGGATTTGCCCAGAGCCCATTTCCTCATTTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971123 118 - 14338769 TCCTCATGTCCTTCCATATCAGACTCCAAG---------CCTGCCTTTTCCAATTGCAGCAAAAACTCATCATCTCAACACCACTC-ACTCTGGCCAGGATTTGCCCAGAGCCCATTTCCTCATTTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 914476 118 + 1946073 TCCTCATGTCCTTCCATATCAGACTCCAAG---------CCTGCCTTTCCCAATTGCAGCAAAAACTCATCATCTCAACACCACTC-ACTCTGGCCAGGATTCACCCAGAGCCCATTTCCTCATTTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1943930 118 - 2117846 TCCTCACGTCCTTCCACATCAGACTCCAAG---------CCTGCCGTTACCAACTGCAGCAAAAACTCATCATTTCAATACCACTC-AACCTGGCCAGGATTCACCCAGAGCCCGTTTCCTCATTTCt i calJac3.chrUn_GL286373 C 0 I 409 s saiBol1.JH378157 8858719 118 - 16357246 TCCTCACATCCTTCCATATCAGACTCCAAG---------CCTGCCATTACCAACTGCAGCAAAAACTCATCATTTCAACACCACTC-AACCTGGCCAGGATTCGCCCAGAGCCCATTTCCTCAtttct i saiBol1.JH378157 C 0 I 419 s cebCap1.NW_016107750v1 1341475 118 - 1807191 TCCTCACGTCCTTCCATATCAGACTCCAAG---------CCTGCCGTTACCAGCTGCAGCAAAAACTCATCATTTCAACACCACTC-AAACTGGCCAGGATTCGCCCAGAGCCCATTTCCTCAtttct i cebCap1.NW_016107750v1 C 0 I 426 s aotNan1.NW_018512383v1 19971 118 + 5963231 TCCTCACATCCTTCCATATCAGACTCCAAG---------CATGCCGTTACCAACTACAGCAAAAACTCATCATTTCAATACCACTC-AACCTGGCCAGGATTCGCCCAGAGCCCATTTCCTCAtttct i aotNan1.NW_018512383v1 C 0 I 416 s micMur3.chr7 5710943 127 + 108171978 TCCTTGTGTCTTTCCACATCAGACTCCAAGCTTGTCTTTCCCGTCTTTCCCAACTGCAGCAAGAATCCACCATCTCAACACCACCT-GACCTGGCCAGGACTCGCCCGGAGCCCATTTCCTTGTCTCT i micMur3.chr7 I 466 C 0 s proCoq1.NW_012136747v1 5074896 118 - 6317780 TCCTTGTGTCCTTCCACATCAGACTCCAAG---------CCTGCCTTTTCCAACTGCGGCAAGAATCCATCATCTCAACACCACCT-GACCTGGCCAGGATTTGCCCAGAGTCTGTTTTCTCATCTCT i proCoq1.NW_012136747v1 I 406 C 0 s otoGar3.GL873526 36285994 112 - 42659167 -TCCTGCATCGTTCCACACCAGACT--------------CCTGCCCTTCCCAACTGCAGCAAGAGTCCATCACTACAATACCACCA-GACCTAGCCAGGATTCTCCCAGAACCCATTTCCTCCCCTGT i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 56702 113 + 1056298 TCTTCCTACTCTTCCACACCTGAGCCTGAG---------CTGATCCTTGGCACCTACAGCAGGATC----CATCTAGACAATGCCCTGCCCTGGTCCAAATATGCCCAGAG--CGTGTTCATATTTCT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46083465 586 - 69331447 I a score=41850.000000 s hg38.chr22_GL383582v2_alt 74276 4 + 162811 aaaa s panTro5.chr22 28854621 4 + 37823149 AAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41129262 4 + 50109623 aaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3151205 4 + 4464012 aaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647740 4 - 115148730 AAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84263028 4 + 92844088 AAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608035 4 - 96509753 AAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099725 4 - 13098629 AAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066296 4 - 4483953 AAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24697056 4 + 33263144 AAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971241 4 - 14338769 AAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 914594 4 + 1946073 AAAA i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5711070 4 + 108171978 AAAA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5075014 4 - 6317780 AAAA i proCoq1.NW_012136747v1 C 0 I 696 s otoGar3.GL873526 36286106 4 - 42659167 AAAA i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 56815 4 + 1056298 GAAA i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 20089 416 + 5963231 I e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46083465 586 - 69331447 I e cebCap1.NW_016107750v1 1341593 426 - 1807191 I e saiBol1.JH378157 8858837 419 - 16357246 I e calJac3.chrUn_GL286373 1944048 409 - 2117846 I a score=38913.000000 s hg38.chr22_GL383582v2_alt 74280 6 + 162811 ------cagaca-- s panTro5.chr22 28854625 6 + 37823149 ------CAGACA-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41129266 6 + 50109623 ------cagaca-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3151209 6 + 4464012 ------cagaca-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647744 6 - 115148730 ------CAGACA-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84263032 6 + 92844088 ------TAGACA-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608039 6 - 96509753 ------TAGACA-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099729 6 - 13098629 ------TAGACA-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066300 6 - 4483953 ------TAGACA-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24697060 6 + 33263144 ------TAGACA-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971245 6 - 14338769 ------TAGACA-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 914598 6 + 1946073 ------TAGACA-- i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5711074 6 + 108171978 ------TAGACA-- i micMur3.chr7 C 0 I 696 s otoGar3.GL873526 36286110 6 - 42659167 ------CAGACA-- i otoGar3.GL873526 C 0 I 1 s dasNov3.JH570235 56819 14 + 1056298 TGCCATCGGAAACG i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 20089 416 + 5963231 I e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46083465 586 - 69331447 I e proCoq1.NW_012136747v1 5075018 696 - 6317780 I e cebCap1.NW_016107750v1 1341593 426 - 1807191 I e saiBol1.JH378157 8858837 419 - 16357246 I e calJac3.chrUn_GL286373 1944048 409 - 2117846 I a score=446258.000000 s hg38.chr22_GL383582v2_alt 74286 67 + 162811 ctaattccga-ctagagagggaggatatgaagggaaacctaattctgaatctatactga-ttaagggca s panTro5.chr22 28854631 67 + 37823149 CTAATTCCGA-CTAGAGAGGGAGGATATGAAGGGAAACCGAATTCTGAATCTATACTGA-TTAAGGGCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41129272 67 + 50109623 ctaattccga-ctagagagggaggatatgaagggaaacctaattctgaatctatactga-ttaagggca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3151215 67 + 4464012 ctaattccga-ctagagagggaggatatgaagggaaacctaattctgaatctacactga-ttaagggca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647750 67 - 115148730 TTAATTCCGA-CTAGAGAGGGAGGATATGAAGGGAAACCTAATTCTGAATCTATACTGA-TTTAGGGCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84263038 67 + 92844088 TTAATTCTGA-CTAGAGAGGAAGGATGTGAAGAGAAACCTAATTCTGAATCTATACTGA-TTTAGGGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608045 67 - 96509753 TTAATTCTGA-CTAGAGAGGAAGGATGTGAAGAGAAACCTAATTCTGAATCTATACTGA-TTTAGGGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099735 67 - 13098629 TTAATTCTGA-CTAGAGAGGAAGGATGTGAAGAGAAACCTAATTCTGAATCTATACTGA-TTTAGGGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066306 67 - 4483953 TTAATTCTGA-CTAGAGAGGAAGGATGTGAAGAGAAACCTAATTCTGAATCTATACTGA-TTTAGGGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24697066 67 + 33263144 TTAATTCTGA-CTAGAGAGGAAGGATGTGAAGAGAAACCTAATTCTGAATCTATACTGA-TTTAGGGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971251 67 - 14338769 TTAATTCTGA-CTAGAGAGGAAGGATGTGAAGAGAAACCTAATTCTGAATCTATACTGA-TTTAGGGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 914604 67 + 1946073 TTAATTCTGA-CTAGAGAGGAAGGATGTGAAGAGAAACCTAATTCTGCATCTATACTGA-TTTAGGGCA i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36286117 69 - 42659167 ATAATTCCCACCTGGAGAGGGCAGGTGTGGAGGGAAATCTAATTCTGAATCTGTACTAACTTAAGAGCA i otoGar3.GL873526 I 1 C 0 s dasNov3.JH570235 56833 61 + 1056298 GCAGTACTCA-CTGTATGGGGAA------AAGAGGAATCTGATTCTGAATCTGTACCAA-GGCAGGACA i dasNov3.JH570235 C 0 I 47 e aotNan1.NW_018512383v1 20089 416 + 5963231 I e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46083465 586 - 69331447 I e proCoq1.NW_012136747v1 5075018 696 - 6317780 I e micMur3.chr7 5711080 696 + 108171978 I e cebCap1.NW_016107750v1 1341593 426 - 1807191 I e saiBol1.JH378157 8858837 419 - 16357246 I e calJac3.chrUn_GL286373 1944048 409 - 2117846 I a score=245624.000000 s hg38.chr22_GL383582v2_alt 74353 45 + 162811 ccgatggtcagggtccaagagccctttttt---cccTGGGAT-GCACTC s panTro5.chr22 28854698 45 + 37823149 CTGATGGTCAGGGTCCAAGAGCCCTTTTTT---CTCCGGGAT-GCACTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41129339 44 + 50109623 ctgatggtcagggtccaagagccc-ttttt---CTCCGGGAT-GCACTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3151282 45 + 4464012 ctgatggtcagggtccaagagccctttttt---CTCTGGGAG-GCACTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647817 45 - 115148730 CTGACGGTCAGGGTCCAAGAGCCCTTTCTT---CTCTGGGAT-GCACTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84263105 46 + 92844088 CTGATGGTCAGGGTCCAAGAGCCCTTTATT---CTCTGGGATGGCACTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608112 46 - 96509753 CTGATGATCAGGGTCCAAGAGCCCTTTATT---CTCTGGGATGGCACTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099802 46 - 13098629 CTGATGGTCAGGGTCCAAGAGCCCTTTATT---CTCTGGGATGGCACTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066373 46 - 4483953 CTGATGGTCAGGGTCCAAGAGCCCTTTCTT---CTCTGGGATGGCACTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24697133 46 + 33263144 CTAATGGTCAGGGTCCAAGTGCCCTTTCTT---CTCTGGGATGGCACTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971318 46 - 14338769 CTGATGGTCAGGGTCCAAGAGCCCTTTCTT---CTCTGGGATGGCACTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 914671 46 + 1946073 CTGATGGTCAGGGTCCAAGAGCCCTTTCTT---CTCTAGGATGGCACTA i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36286186 47 - 42659167 TTG-CAATTGGGGTCCAAGGGTCCTTTCTCTGGCTCTGGTAT-TCATCC i otoGar3.GL873526 C 0 I 15 e aotNan1.NW_018512383v1 20089 416 + 5963231 I e mm10.chr15 82810936 572 + 104043685 I e dasNov3.JH570235 56894 47 + 1056298 I e canFam3.chr10 46083465 586 - 69331447 I e proCoq1.NW_012136747v1 5075018 696 - 6317780 I e micMur3.chr7 5711080 696 + 108171978 I e cebCap1.NW_016107750v1 1341593 426 - 1807191 I e saiBol1.JH378157 8858837 419 - 16357246 I e calJac3.chrUn_GL286373 1944048 409 - 2117846 I a score=1628713.000000 s hg38.chr22_GL383582v2_alt 74398 316 + 162811 Atttctttcttttttttttttttt--tttgagatg-gagtctcactctgtcgtccaggctggagtgcagtggcacgatctcagctcactgcaagctccacgtcccgggttcatgccattctcctgcctcagtctcccgagtagctgggactacaggcgcccaccaccacgcccggctaattttttgtatttttagtattttagtgttttaattttttgtatttttgtattgttagccaggatggtctcgatctcctgacctcgtgatctgcccgcct------cccaaagtgctgggattataggcgttagccactgtgcccggc s panTro5.chr22 28854743 313 + 37823149 Atttctttcttttttttttttttt-----gagatg-gaggctcactctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaagctccacgtcccaggttcatgccattctcctgcctcagtctcccgagtagctgggactacaggcgcccaccaccacgcccggctaattttttgtatttttagtattttagtattttaattttttatatttttgtattgttagccaggatggtctcgatctcctgacctcgtgatctgcccacct------cccaaagtgctgggattataggcgttagccactgtgcccggc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41129383 312 + 50109623 Attta-ttcttctttttttttttt-----gagatg-gagtctcactctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaagctccacgtcccgggttcatgccattctcctgcctcagtctcccgagtagctgggactacaggcacccaccaccacgcccggctaattttttgtatttttagtattttagtattttaattttttatatttttgtattgttagccaggatggtctcgatctcctgacctcgtgatctgcccacct------cccaaagtgctgggattataggcgttagccactgtgcccggc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3151327 310 + 4464012 Atttctttctttcttttttttttttttttgagatg-gagtctcactctgtcacccaggctggagtgcagtggcacaatctcagctcactgcaagctccacgtcccgggttcatgccattctcccgcctcagtctcccaagtagctgggactacaggcgcccaccaccacgcccggccaattttttgtatttttagta--------ttttaattttttgtatttttgtattgttagccaggatggtctcgatctcctgacctcgtgatctgcccgcct------cccaaagtgctgggattataggcgttagccactgtgcccggc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106647862 310 - 115148730 Atttctttcttctttttttt---------gagatg-gagtctcactctgtcacccaggctggagtgcagcggcgtgatctaggctcactgcaagctccacctcccaggttcatgccattcttctgcctcagtctcctgagtagctgggactacaggtgcccaccaccacgcctggctaattttttatatttttagtattttagtattttaattttttgtatttttgtattgttagccaggatggtctcgatctcctgaccttgtgatccgcctgcctc-----cccaaagtgctgggattataggcataagccactgcgcccggt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84263151 318 + 92844088 Atttc----ttatttttttctttt--tttgagatgtgagtctcgccctgccacacaggctggagtgcagtggtgcgatctaggctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgctaccacgaccagctaacttttagtatttttagtattttcgtattttaattttttgtatttttgta-tgttagccaggatggtctccgtcccctgacctcgtgatctggccgtctcggtctcccaaagtgctgggattacaggtgtgagccaccgcgcccggc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608158 322 - 96509753 Atttcttttttatttttttctttt--tttgagatgtgagtctcgctctgccacacaggctggagtgcagtggtgcgatctaggctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgctaccacgaccagctaacttttagtatttttagtattttcgtattttaattttttgtatttttgta-tgttagccaggatggtctccgtcccctgacctcgtgatctggccgtctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7099848 313 - 13098629 Atttcttttttatttttttctttt--tttgagatgtgagtctcgctctgccacacaggctggagtgcagtggtgcgatctaggctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgctaccacgaccagctaac---------ttttagtattttcgtattttaattttttgtatttttgta-tgttagccaggatggtctccatcccctgacctcgtgatctggccgtctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066419 322 - 4483953 Atttcttttttatttttttctttt--tttgagatgtgagtctcgctctgccacacaggctggagtgcagcggtgcgatctaggctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgctaccacgaccagctaacttttagtatttttagtattttcgtattttaattttttgtatttttgta-tgttagccaggatgatctccgtcccctgacctcgtgatctgcccgtctcggcctcccaaagtgctgggattacaggtgtgagccactgcgcccggc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24697179 322 + 33263144 Atttcttttttatttttttctttt--tttgagatgtgagtctcgctctgccacacaggctggagtgcagtggtgcgatctaggctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgctaccacgaccagctaacttttagtatttttagtattttcgtattttaattttttgtatctttgta-tgttagccaggatggtctccatcccctgacctcgtgatctgcccatctcggcctcccaaagtgctgggattacaggtgtgagtcaccgtgcccggc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971364 322 - 14338769 Atttcttttttatttttttctttt--tttgagatgtgagtctcgctctgccacacagactggagtgcagtgatgagatctaggctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgctaccacgaccagctaacttttagtatttttagtattttcgtattttaattttttgtatttttgta-tgttagccaggatggtctccgtcccctgaccttgtgatctgcccgtctcggcctcccaaagtgctgggattacaggtgtgagccactgcgcccggc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 914717 318 + 1946073 Atttcttttttatttttttctttt--tttgagatg-gagtcttgctctgccacacaggctggagtgcagtggtgcgatctaggctcactgcaagctccacctcccaggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgctaccacgaccggct----tttagtatttttagtatttttgtattttaattttttgtgtttttgtattgttagccaggatggtctccgtcccctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagc i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512383v1 20089 416 + 5963231 I e mm10.chr15 82810936 572 + 104043685 I e dasNov3.JH570235 56894 47 + 1056298 I e canFam3.chr10 46083465 586 - 69331447 I e otoGar3.GL873526 36286233 15 - 42659167 I e proCoq1.NW_012136747v1 5075018 696 - 6317780 I e micMur3.chr7 5711080 696 + 108171978 I e cebCap1.NW_016107750v1 1341593 426 - 1807191 I e saiBol1.JH378157 8858837 419 - 16357246 I e calJac3.chrUn_GL286373 1944048 409 - 2117846 I a score=51555.000000 s hg38.chr22_GL383582v2_alt 74714 5 + 162811 cTGGG s panTro5.chr22 28855056 5 + 37823149 cTGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41129695 5 + 50109623 cTGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3151637 5 + 4464012 cTGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648172 5 - 115148730 cTGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84263469 5 + 92844088 cTGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608480 5 - 96509753 cTGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100161 5 - 13098629 cTGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066741 5 - 4483953 cTGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24697501 5 + 33263144 cTGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971686 5 - 14338769 cTGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915035 5 + 1946073 cTGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1944457 5 - 2117846 CTGGG i calJac3.chrUn_GL286373 I 409 C 0 s saiBol1.JH378157 8859256 5 - 16357246 CTGGG i saiBol1.JH378157 I 419 C 0 s aotNan1.NW_018512383v1 20505 5 + 5963231 CTGGG i aotNan1.NW_018512383v1 I 416 C 0 e mm10.chr15 82810936 572 + 104043685 I e dasNov3.JH570235 56894 47 + 1056298 I e canFam3.chr10 46083465 586 - 69331447 I e otoGar3.GL873526 36286233 15 - 42659167 I e proCoq1.NW_012136747v1 5075018 696 - 6317780 I e micMur3.chr7 5711080 696 + 108171978 I e cebCap1.NW_016107750v1 1341593 426 - 1807191 I a score=21840.000000 s hg38.chr22_GL383582v2_alt 74719 2 + 162811 AT s panTro5.chr22 28855061 2 + 37823149 AT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41129700 2 + 50109623 AT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3151642 2 + 4464012 AT i gorGor5.CYUI01015375v1 C 0 I 318 s nomLeu3.chr7b 106648177 2 - 115148730 AT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84263474 2 + 92844088 AT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608485 2 - 96509753 AT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100166 2 - 13098629 AT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066746 2 - 4483953 AT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24697506 2 + 33263144 AT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971691 2 - 14338769 AT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915040 2 + 1946073 AT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1944462 2 - 2117846 AT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859261 2 - 16357246 AT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342019 2 - 1807191 AT i cebCap1.NW_016107750v1 I 426 C 0 s aotNan1.NW_018512383v1 20510 2 + 5963231 AT i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e dasNov3.JH570235 56894 47 + 1056298 I e canFam3.chr10 46083465 586 - 69331447 I e otoGar3.GL873526 36286233 15 - 42659167 I e proCoq1.NW_012136747v1 5075018 696 - 6317780 I e micMur3.chr7 5711080 696 + 108171978 I a score=480564.000000 s hg38.chr22_GL383582v2_alt 74721 48 + 162811 GCactcatttctttaacacagactcacttggcactagcatagtt--------acat s panTro5.chr22 28855063 48 + 37823149 GCactcatttctttaacacagactcacttggcactagcatagtt--------acat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41129702 48 + 50109623 GCactcatttctttaacacagactcacttggcactagcatagtt--------acat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3151962 48 + 4464012 GCactcatttctttaacacagactcacttggcactagcatagtt--------acat i gorGor5.CYUI01015375v1 I 318 C 0 s nomLeu3.chr7b 106648179 48 - 115148730 GCactcatttctttaacacagactcacttggcactagcatagtt--------acat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84263476 48 + 92844088 GCACTCATTTCTTTAACACAGACTCACCTGGCACTAGCATAGTT--------ACAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608487 48 - 96509753 GCACTCATTTCTTTAACACAGACTCACCTGGCACTAGCATAGTT--------ACAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100168 48 - 13098629 GCACTCATTTCTTTAACACAGACTCACCTGGCACTAGCATAGTT--------ACAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066748 48 - 4483953 GCACTCATTTCTTTAACACAGACTCACCTGGCACTAGCATAGTT--------ACAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24697508 48 + 33263144 GCACTCATTTCTTTAACACAGACTCACCTGGCACTAGCACAGTT--------ACAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971693 48 - 14338769 GCACTCATTTCTTTAACACAGACTCACCTGGCACTAGCATAGTT--------ACAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915042 48 + 1946073 GCACTCATTTCTTTAACACAGACTCATCTGGCACTAGCATAGTT--------ACAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1944464 56 - 2117846 GCactcattcctttcacacagactcacttggcactagcatagttacacaattacat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859263 56 - 16357246 GCactcactccttccacacagactcacttggcactagcatagttacacagttacat i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342021 54 - 1807191 GCactcattcctttcacacagactcacttggcactagcatagtt--acagttacat i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 20512 56 + 5963231 GCACTCATTCCTTTCACATAGACTCACTTGGTACTAGCATAGTCACACAGTTACAT i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e dasNov3.JH570235 56894 47 + 1056298 I e canFam3.chr10 46083465 586 - 69331447 I e otoGar3.GL873526 36286233 15 - 42659167 I e proCoq1.NW_012136747v1 5075018 696 - 6317780 I e micMur3.chr7 5711080 696 + 108171978 I a score=85171.000000 s hg38.chr22_GL383582v2_alt 74769 9 + 162811 gccccgctc s panTro5.chr22 28855111 9 + 37823149 gccccgctc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41129750 9 + 50109623 gccccgctc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152010 9 + 4464012 gccccgctc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648227 9 - 115148730 gccccgctc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84263524 9 + 92844088 GCACCGCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608535 9 - 96509753 GCACCGCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100216 9 - 13098629 GCACCGCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066796 9 - 4483953 GCACCGCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24697556 9 + 33263144 GCACCGCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971741 9 - 14338769 GCACCGCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915090 9 + 1946073 GCCCCGCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1944520 9 - 2117846 cccctgctc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859319 9 - 16357246 cccctgctc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342075 9 - 1807191 cccctgctc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 20568 9 + 5963231 CCCCTgctc i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36286248 9 - 42659167 GTCCtgctc i otoGar3.GL873526 I 15 C 0 e mm10.chr15 82810936 572 + 104043685 I e dasNov3.JH570235 56894 47 + 1056298 I e canFam3.chr10 46083465 586 - 69331447 I e proCoq1.NW_012136747v1 5075018 696 - 6317780 I e micMur3.chr7 5711080 696 + 108171978 I a score=616303.000000 s hg38.chr22_GL383582v2_alt 74778 73 + 162811 tgggctaggctttgatggtgc----aaagacagacgtggtccctgccctaa------tggagcttacagtctagtggagagac-- s panTro5.chr22 28855120 73 + 37823149 tgggctaggctttgatggtgc----aaagacagacgtggtccctgccctaa------tggagcttacactctagtggagagac-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41129759 73 + 50109623 tgggctaggctttgatggtgc----aaagacagacgtggtccctgccctaa------tggagcttacactctagtggagagac-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152019 73 + 4464012 tgggctaggctttgatggtgc----aaagacagacgtggtccctgccctaa------tggagcttacactctagtggagagac-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648236 72 - 115148730 tgggtt-ggctttgatggtgc----aaagacagacgtggtccctgccctaa------tggagcttacattctagtggagagac-- i nomLeu3.chr7b C 0 M 100 s rheMac8.chr10 84263533 62 + 92844088 TGGGCTAGGCTTT---------------gacagatgtggtccctgcccatg------tggagcttacatgctagtggagagac-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608544 62 - 96509753 TGGGCTAGGCTTT---------------gacagatgtggtccctgcccatg------tggagcttacattctagtggagagac-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100225 62 - 13098629 TGGGCTAGGCTTT---------------gacagatgtggtccctgcccatg------tggagcttacattctagtggagagac-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066805 62 - 4483953 TGGGCTAGGCTTT---------------gacagatgtggtccctgcccatg------tggagcttaccttctattggagagac-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24697565 62 + 33263144 TGGGCTAGGCTTT---------------gacagatgtggtccctgcccatg------tggagcttacattctagtggagagac-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971750 62 - 14338769 TGGGCTAGGCTTT---------------gacagatgtggtccctgtccatg------tggagcttacattctagtggagagac-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915099 62 + 1946073 TGGGCTAGGCTTT---------------gacagatgtggtccctgcccacg------tggagcttacattctagtggagagac-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1944529 65 - 2117846 tgggctaggctttgatggtac----aaagatagacatggtccctgccctca------tggagcttatattcta--------at-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859328 71 - 16357246 tgggctaggctttaatggtgc----aaagacagacgtggtccctgccctca------tggagcttacattctagt--agagac-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342084 73 - 1807191 tgggctaggctttgatggtac----aaagacagacgtggtccctgcccaaa------tggagcttacattctagtagagagac-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 20577 73 + 5963231 tgggctaggctttgatggtgc----aaagacagacgtggttcctgccctca------tggagcttacattctagtagagagac-- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36286257 78 - 42659167 gaggccaggccaacatagtaca---aaaaagagacacagttcctcccctcagaagtctggagcc--cagtgtggtggagagac-- i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 56941 78 + 1056298 tgtgccaggctctggcaatacaatgaaaaacagacatggttcctgccctca------tagagcttacagtctaatggag-gatgc i dasNov3.JH570235 I 47 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46083465 586 - 69331447 I e proCoq1.NW_012136747v1 5075018 696 - 6317780 I e micMur3.chr7 5711080 696 + 108171978 I a score=1553964.000000 s hg38.chr22_GL383582v2_alt 74851 171 + 162811 aggtagtaaacaagtaaatgatctgaaattgtggtgatgctagga--tggctgcaa---gcgaggaggggggcaatggagacaaggatttagaaagggaaaggcttctctgaggaagtaggatttaagctgagacccag-----gagatgggagcctgttttcaacatgaagatggggagc s panTro5.chr22 28855193 170 + 37823149 aggtagtaaacaagtaaatgatctgaaattgtggtgatgctagga--tggctgcaa---gcgaggaggggggcaatggagacaaggatttagaaagggaaaggcttctctgaggaagtagcatttaagctaagacccag-----gagatgg-agcctgttttcaacatgaagatggggagc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41129832 170 + 50109623 aggtagtaaacaagtaaatgatctgaaattgtggtgatgctagga--tggctgcaa---gcgaggaggggggcaatggagacaaggatttagaaagggaaaggcttctctgaggaagtagcatttaagctgagacccag-----gagatgg-agcctgttttcaacatgaagatggggagc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152092 170 + 4464012 aggtagtaaacaagtaaatgatctgaaattgtggtgatgctagga--tggctgcaa---gcgaggaggggggcaatggagacaaggatttagaaagggaaaggcttctctgaggaagtagcatttaagctgagacccag-----gagatgg-agcctgttttcaacatgaagatggggagc i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84263595 170 + 92844088 aggtagtaaacaagtaaacgatctgaaattgtggtgaggctagga--cggctgcaa---gtgaggagaggggcaatggaaacaaggatttagaaagggaaaggcttctctgaggatgcggcatttaagctgggactcag-----gagatgg-agcctgtttgcaacatgaagacggggagc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608606 170 - 96509753 aggtagtaaacaagtaaacgatctgaaattgtggtgaggctagga--cggctgcaa---gtgaggagaggggcaatggaaacaaggatttagaaagggaaaggcttctctgaggacgcagcatttaagctgggactcag-----gagatgg-agcctgtttgcaacatggagacggggagc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100287 170 - 13098629 aggtagtaaacaagtaaacgatctgaaattgtggtgaggctagga--cggctgcaa---gtgaggagaggggcaatggaaacaaggatttagaaagggaaaggcttctctgaggacgcggcatttaagctgggactcag-----gagatgg-agcctgtttgcaacatgaagacggggagc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4066867 170 - 4483953 aggtagtaaacaagtaaacgatctgaaattgtggtgaggctagga--cggctgcaa---gtgaggagagcggcaatggaaacaaggatttagaaagggaaaggcttctctgaggacgcggcatttaagctgggactcag-----gagatgc-agcctgtttgcaacatgaagacggggagc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24697627 170 + 33263144 aggtagtaaacaagtaaacgatctgaaattgtggtgatgctagga--cggctgcaa---gtgaggagaggggcaatggaaagaaggatttagaaagggaaaggcttctctgaggaagcggcattgaagctgggactcag-----gagatgg-agcctgtttgcaacatgaagacggggagc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971812 170 - 14338769 aggtagtaaacaagtaaacgatctgaaattgtagtgaggctagga--cggctgcaa---gtgaggacaggggcaatggaaacaaggatttagaaagggaaaggcttctctgaggacgcggcatttaagctgggactcag-----gagatgg-agcctgtttgcaacatgaagacggggagc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915161 170 + 1946073 aggtagtaaacaagaaaacgatctgaaattgtggtgatgctagaa--cagctgaaa---gtgaggagaggggcaatggagacaaggatttagaaagggaaaggcttctctgaggaagcggcatttaagctgggactcag-----gagatgg-agcctgttttcaacatgaagaaggggagc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1944594 169 - 2117846 aggtagtaaacaagtacatgatgtgaaatagtggtgatgctagga--aggctgcaa---gtgaggaaaggggcattggagacaaggatttagaaaggtaca-gtttctctgaggaactggcatttaagctgagacccaa-----gagatga-agtctgtcttcaacatgacgatggggagc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859399 167 - 16357246 aggtagtaaacaagtacatgatgtgaaatagtggtgatgctagga--aggctgcaa---gtgagtaaacgggcaatggagacaacgatttagaaaggtaaa-gtttctctgaggaactggcatttaagctgagaccc-------gagatga-agtctgtcttcgacatgacgatggggagc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342157 169 - 1807191 aggtagtaaacaagtacacgatgtgaaatagtggtgatggtagga--aggctgcaa---gtgaggaaaggggcaatggagacaaggatttagaaaggtaaa-gtttctctgaggaactggcatttaagctgagacccaa-----gagatga-agtctgtcttcaacatgacgatggggagc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 20650 169 + 5963231 aggtagtaaacaagtacatgatgtgaaatagtggtgatgctagga--aggctgcac---gtgaggaaaggggcaatggagacaaggatttagaaaggtaaa-gtttctctgaggaactggcatttaagctgagacccaa-----gagatga-agtctgtcttcaacatgatgatggagagc i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36286335 171 - 42659167 aggtagtgatcaagtgagcaagctgaagttgtggggatgccagaaattggctacaaagggggaagagaggggcaatttaga----gatttagaaagggata-ccttcttcgaagaagtgacatttaaggtgagacctagaggatgagatgg-agcctgtc----atgagaaggtgggcagg i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 57019 161 + 1056298 agataatgagaaa---aatagttaaaaattgtggtgacactacga--agactgcag---aggcggaggttgtgaat-tagac-aggatc---aatggggagggcctctctgaggaggtgac--tgaaactgggaccagggggatgggatgg-agcctgcttt----gtgaagattaggagg i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46083465 586 - 69331447 I e proCoq1.NW_012136747v1 5075018 696 - 6317780 I e micMur3.chr7 5711080 696 + 108171978 I e nomLeu3.chr7b 106648308 100 - 115148730 M a score=1810732.000000 s hg38.chr22_GL383582v2_alt 75022 184 + 162811 caaagtgtttccagcacaaggaactgtgtgtgcagaagcccagaggaaggaagcctggtccctgaggagctggagg-cag--ccaggggcctggagAG-TC--ACCTGAGACTTCCATAGGGCTCTGGAAGGCAAGGTGAGATGTCTGGGC-TTTGTGTGGAAGATGACAAGAAT---CTCTGACGTAGAGAAG s panTro5.chr22 28855363 184 + 37823149 caaagtgtttccagcacaaggaactgtgtgtgcagaagcccagaggaaggaagcctggtccctgaggagctggagg-cag--ccaggggccgggagag-tC--ACCTGAGACTTCCATAGGGCTCTGGAAGGCAAGGTGAGATGTCTGGGC-TTTGTTTGGAAGATGACAAGAAT---CTCTGACGTAGAGAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130002 184 + 50109623 caaagtgtttccagcacaaggaactgtgtgtgcagaagcccagaggaaggaagcctggtccctgaggagctggagg-cag--ccaggggcctggagAG-TC--ACCTGAGACTTCCATAGGGCTCTGGAAGGCAAGGTGAGATGTCTGGGC-TTTGTTTGGAAGATGACAAGAAT---CTCTGACGTAGAGAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152262 184 + 4464012 caaagtgtttccagcacaaggaactgtgtgtgcagaagcccagaggaaggaagcctggtccctgaggagctggagg-cag--ccagGGGCCTGGTGAG-TC--ACCTGAGACTTCCATAGGGCTCTGGAAGGCAAGGTGAGACGTCTGGGC-TTTGTTTGGAAGATGACAAGAAT---CTCTGACGCAGAGAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648411 176 - 115148730 CAaagtgcttccagcacaaggaactgtgtgtgcagaagcccagagggaggaagcctggtccctgaggagctggagg-cag--ccaggggcctggagAG-TC--ACCTGAGACTTCCACAGGGCTCTGGAAGGCAAGGTGAGACGTCTGGGC-TTTGTTTGGAAGATG-CAAGAAT--CCTCTGATG-------- i nomLeu3.chr7b M 100 C 0 s rheMac8.chr10 84263765 184 + 92844088 taaagtgtttccagcacaaggaactgtgtgtgcagaagcccagagggaggcagcctgccccctgaggaggtagagt-agg--ccaggggcctggagAG-TC--ACCTGAGACTTCCACAGGGCTCTGG-AGGCAAGGTGAGACGTTTGGACTTTTATTTGGAAGATGACAAGAAT---CTCTGACGTAGAGAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608776 184 - 96509753 taaagtgtttccagcacaaggaaccgtgtgtgcagaagcccagagggaggcagcctgccccctgaggaggtagagt-agg--ccaggggcctggagAG-TC--ACCTGAGACTTCCACAGGGCTCTGG-AGGCAAGGTGAGACATTTGGACTTTTATTTGGAAGATGACAAGAAT---CTCTGACGTAGAGAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100457 184 - 13098629 taaagtgtttccagcacaaggaactgtgtgtgcagaagcccagagggaggcagcctgccccctgaggaggtagagt-agg--ccaggggcctggagAG-TC--ACCTGAGACTTCCACAGGGCTCTGG-AGGCAAGGTGAGACGTTTGGACTTTTATTTGGAAGATGACAAGAAT---CTCTGACGTAGAGAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067037 183 - 4483953 taaagtgtttccagcacaaggaactgtgtgtgcagaagcccagagggaggcagcctgccccctgaggaggtagagg-agg--ccaggggcctggagAG-TC--ACCTGAGACTTCCACAGGGCTCTGG-AGGCAAGGTGAGACGTTTGGAC-TTTATTTGGAAGATGACAAGAAT---CTCTGTCGTAGAGAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24697797 183 + 33263144 taaagtgtttccagcacaaggaattgtgtgtgcagaagcccagagggaggcagcctgccccctgaggaggtagagg-agg--ccagGGACCTAGAGAG-TC--ACCTGAGACTCCCACAGGGCTCTGG-AGGCAAGGTGAGACGTTTGGAC-TTTATTTGGAAGATGACAAGAAT---CTCTGACGTAGAGAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13971982 183 - 14338769 tgaagtgtttccagcacaaggaactgtgtgtgcagaagcccagagggaggcagcctgccccctgaggaggtagagg-agg--ccaggggcctggagAG-TC--ACCTGAGACTTCCACAGGGCTCTGG-AGGCAAGGTGAGACGTTTGGAC-TTTATTTGGAAGATGACAAGAAT---CTCTGTCGTAGAGAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915331 183 + 1946073 taaagtgtttccagcacaaggaactgtgtgtgcagaagcccagagggaggcagcctgccccttgaagaggtagagg-agg--ccaggggcctggagAG-TC--ACCTGAGACTTCCACAGGGCTCTGG-AGGCAAGGTGAGACGTTTGGAC-TTTATTTGGAAGACAACAAGAAT---CTCTGACGTAGAGAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1944763 183 - 2117846 cagagtgtttccagcacaaggtactatgtgttcagaagcccagagggagaaagcctggctcctgaggagctgtagg-agg--ccaggtgcctggagAA-TC--ACCTGAGACTTCCACAGACCTCTGG-AGGCAAGGCGAGACATCTGGAC-TTTATTTGGAACGTAACAAGAAT---CTCGGACATAGAGAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859566 184 - 16357246 cagagtgtttccagcacaaggtactgtgtgtgcagaagcccagagggagaaagcctggctcctgaggagccgtaggaagg--ccaggtgcctggagAG-TC--ACCTGAGACTTCCACAGACCTCTGG-AAGCAAGGTGAGACATCTGGAC-TTTATTTGGAACGTAACAAAAAT---CTCGGACGTAGAGAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342326 172 - 1807191 cagagtgtttccagcacaaggtactgtgcgtgcagaagcccacagggagaaagcctggctcctgaggagctgtagg-agg--ccaggtgcctg--------------gagACTTCCACAGACCTCTGG-AGGCAAGGTGAGACATCTGGAC-TTTATTTGGAACGTAGCAAGAAT---CTCGGATGTAGAGAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 20819 183 + 5963231 cagactgtttccagcacaaggtaccgtgtgtgcagaagcccagagggggaaagcctggctcctgaggagctgtagg-agg--ccaggtgcctggagAG-TC--ACCTGAGACTTCCACAGGCCTCTGG-TGGCAAGGTGAGACATCTGGAC-TTTATTTGGAATGTAACAAGAAT---CTCGGACGTAGAGAAG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36286506 156 - 42659167 caaa-------------------------gtgaaaaaacccagagggaagaagcctggcccctgtggcactgaagg-aga--ccaggagcctggagAC-CCTTGCTTGAGACTTCCACAGGCTTTTGG--GTCAAGGTTAGGAATCTGGAC-TTCATTCCAAATGTGACAGGAAC---TTCTGAAGTA---AAG i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 57180 166 + 1056298 caaaaggtagtgggcacaggg--------------------aGGGAGGGGAAGCCAG-CTTCTGAGTTGCTAAAGG-AAAGCCCAGGAGCCTGGAGAACTC--ATGGGAAACTTCCACAG--CCTAGG-AGGCATGGTTAGGAGGCTGATT-TTCATTCTAAATGCAAGAAAAACAAAAACTGAAGCAGAGAAA i dasNov3.JH570235 C 0 I 52 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46083465 586 - 69331447 I e proCoq1.NW_012136747v1 5075018 696 - 6317780 I e micMur3.chr7 5711080 696 + 108171978 I a score=410147.000000 s hg38.chr22_GL383582v2_alt 75206 38 + 162811 GGACAGGACTGGAGGGAGGCCT---AATGAAGATTGCACTT s panTro5.chr22 28855547 38 + 37823149 AGACAGGACTGGAGGGAGGCCT---AATGAAGATTGCACTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130186 38 + 50109623 AGACAGGACTGGAGGGAGGCCT---AATGAAGATTGCACTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152446 38 + 4464012 AGACAGGACTGGAGGGAGGCCT---AATGAAGACTGCACTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648587 35 - 115148730 ---CAGGACTGGAGGGAGGCCT---AATGAAGATTGCACTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84263949 38 + 92844088 AGACAGGACTGGAGGGAGGCCT---AATGAAGATTGCACTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608960 38 - 96509753 AGACAGGACTGGAGGGAGGCCT---AATGAAGATTGCACTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100641 38 - 13098629 AGACAGGACTGGAGGGAGGCCT---AATGAAGATTGCACTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067220 38 - 4483953 AGACAGGACTGGAGGGAGGCCT---AATGAAGATTGCACTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24697980 38 + 33263144 AGACAGGACTGGAGGGAGGCCT---AATGAAGATTGCACTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13972165 38 - 14338769 AGACAGGACTGGAGGGAGGCCT---AATGAAGATTGCACTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915514 38 + 1946073 AGACAGGACTGGAGGGAGGCCT---AATGAAGACTGCACTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1944946 38 - 2117846 AGACAGGACTAGAGTGAGGCCT---AATGAAGACTGTGTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859750 38 - 16357246 AGACAGGCCTAGAGGGAGGCCT---AATGAAGACTGCACTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342498 38 - 1807191 AGACAGGACTAGAGGGAGGCCT---AATGAAGACTGCACTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21002 38 + 5963231 AGACAGGACTAGAGGGAGGCCT---AATGAAGACTGCGCTT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36286662 39 - 42659167 AGACAG--CTGCAGGGAGGCTTGCAAATTACATTTGGGGCT i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e dasNov3.JH570235 57346 52 + 1056298 I e canFam3.chr10 46083465 586 - 69331447 I e proCoq1.NW_012136747v1 5075018 696 - 6317780 I e micMur3.chr7 5711080 696 + 108171978 I a score=448931.000000 s hg38.chr22_GL383582v2_alt 75244 45 + 162811 GGCTGCTGAGCA-------GTGGCAGGGAGGCGGGCACTATAGCAGCCACA-A s panTro5.chr22 28855585 45 + 37823149 GGCTGCTGAGCA-------GTGGCAGGGAGGCGGGCACTATAGCAGCCACA-A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130224 45 + 50109623 GGCTGCTGAGCA-------GTGGCAGGGAGGCGGGCACTATAGCAGCCACA-A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152484 45 + 4464012 GGCTGCTGAGCA-------GTGGCAGGGAGGCGGGCACTATAGCAGCCACA-A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648622 45 - 115148730 GGCTGCTGAGCA-------GTGGCAGGGAGGCGGGCACTATAGCAGCCACA-A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84263987 45 + 92844088 GGCTACTGAGCA-------GTGGCAGGGAGGCGGGCACTATAGAAGCTGCA-A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87608998 45 - 96509753 GGCTACTGAGCA-------GTGGCAGGGAGGCGGGCACTATAGAAGCTGCA-A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100679 45 - 13098629 GGCTACTGAGCA-------GTGGCAGGGAGGCGGGCACTATAGAAGCTGCA-A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067258 45 - 4483953 GGCTACTGAGCA-------CTGGCAGGGAGGCGGGCACTATAGAAGCTGCA-A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698018 45 + 33263144 GGCTACTGAGCA-------GTGGCAGGGAGGCGGGCACTACAGAAGCTGCA-A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13972203 45 - 14338769 GGCTACCGAGCA-------GTGGCAGGGAGGCGGGCACTATAGAAGCTGCA-A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915552 45 + 1946073 GGCTACTGAGCA-------GTGGCAGGGAGGCGGGCACTATAGGAGCCGCA-A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1944984 46 - 2117846 GGCTGCTGAGCA-------GTAGCAGAGAAGCAGGCACTATAGGAGTCACACA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859788 46 - 16357246 GGCGGCTGAGCA-------TTAGCAGGGAGGTAGGCACTATAGGAGCCACACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342536 46 - 1807191 GGCTGCTGAGCA-------GTAGCAGGGAGGCAGGCACTATAGGAGCCACACA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21040 46 + 5963231 GGCTGCTGAGCA-------GTAGCAGGGAGGCAGGCACTATAGGAGTCACACA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36286701 52 - 42659167 GGTGGCAGAGTGGCATGGTGTAACAGCGAGGTGGTC-CTGCAGGAGGCTCACA i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 57398 45 + 1056298 GACAGCAGGGTA-------GTGGGAGGCAGTGAGGGACTGTAGGAGTGGAC-A i dasNov3.JH570235 I 52 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46083465 586 - 69331447 I e proCoq1.NW_012136747v1 5075018 696 - 6317780 I e micMur3.chr7 5711080 696 + 108171978 I a score=422407.000000 s hg38.chr22_GL383582v2_alt 75289 31 + 162811 TGCCTGGGCTGG--GGCTGGTGGGGAAGGAAAG s panTro5.chr22 28855630 31 + 37823149 TGCCTGGGCTGG--GGCTGGTGGGGAAGGAAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130269 31 + 50109623 TGCCTGGGCTGG--GGCTGGTGGGGAAGGAAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152529 31 + 4464012 TGCCTGGGCTGG--GGCTGGTGGGGAAGGAAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648667 31 - 115148730 TGCCTGGGCTGG--GGCTGGTGGGGAAGGAAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264032 31 + 92844088 TGCCTGGGCTGG--TGCTGGTGGGGAAAGAAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609043 31 - 96509753 TGCCTGGGCTGG--TGCTGGTGGGGAAAGAAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100724 31 - 13098629 TGCCTGGGCTGG--TGCTGGTGGGGAAAGAAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067303 31 - 4483953 TGCCTGGGCTGG--TGCTGGTGGGGAAAGAAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698063 31 + 33263144 TGCCTGGGCTGG--TGCTGGTGGGGAAAGAAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13972248 31 - 14338769 TGCCTGGGCTGG--TGCTGGTGGGGAAAGAAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915597 31 + 1946073 TGCCTGGGCTGG--TGCTGGTGGGGAAAGAAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945030 31 - 2117846 ggcctgagctgg--ggttggcaaggaaggaaag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859834 31 - 16357246 GGCCTGAGCTGG--GGCTAGTAAGGAAGGAAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342582 31 - 1807191 GGCCTAAGCTGG--GGCTGGTAAGGAAGGAAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21086 31 + 5963231 ggcctgagctgg--ggctggtaaggaaggaaag i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5711776 31 + 108171978 TGCCTGGGCTGG--GGCTGGTGGGGGAGGAAAG i micMur3.chr7 I 696 I 109 s proCoq1.NW_012136747v1 5075714 31 - 6317780 TGCCTGGGCTGG--GGCTGGTGGGGGAGGGAAG i proCoq1.NW_012136747v1 I 696 C 0 s otoGar3.GL873526 36286753 30 - 42659167 CACCTGGGCTGG--GGCTGGTGGTCAGGGAAG- i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 57443 33 + 1056298 GGCCAGGGTTGGGAGGGTGGTGGTGGAGTGGAG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46083465 586 - 69331447 I a score=135270.000000 s hg38.chr22_GL383582v2_alt 75320 10 + 162811 TGGACAGACT s panTro5.chr22 28855661 10 + 37823149 TGGACAGACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130300 10 + 50109623 TGGACAGACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152560 10 + 4464012 TGGACAGACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648698 10 - 115148730 TGGACAGACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264063 10 + 92844088 TGGACAGACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609074 10 - 96509753 TGGACAGACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100755 10 - 13098629 TGGACAGACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067334 10 - 4483953 TGGACAGACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698094 10 + 33263144 TGGACAGACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13972279 10 - 14338769 TGGACAGACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915628 10 + 1946073 TGGACAGACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945061 10 - 2117846 tggatagact i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859865 10 - 16357246 CGGACAGACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342613 10 - 1807191 TGGATAGACT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21117 10 + 5963231 tagacagact i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5075745 10 - 6317780 GGGACAGACT i proCoq1.NW_012136747v1 C 0 I 98 s otoGar3.GL873526 36286783 10 - 42659167 CAGACAGATT i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 57476 10 + 1056298 CAGAAAGATT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46083465 586 - 69331447 I e micMur3.chr7 5711807 109 + 108171978 I a score=61953.000000 s hg38.chr22_GL383582v2_alt 75330 8 + 162811 CAGGCTCT s panTro5.chr22 28855671 8 + 37823149 CAGGCTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130310 8 + 50109623 CAGGCTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152570 8 + 4464012 CAGGCTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648708 8 - 115148730 CAGGCTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264073 8 + 92844088 TGGGCTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609084 8 - 96509753 TGGGCTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100765 8 - 13098629 TGGGCTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067344 8 - 4483953 TGGGCTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698104 8 + 33263144 CGGGCTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13972289 8 - 14338769 TGGGCTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915638 8 + 1946073 CGGGCTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945071 8 - 2117846 ctggctat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859875 8 - 16357246 CTGGCTAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342623 8 - 1807191 CTGGCTAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21127 8 + 5963231 ctggctat i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36286793 7 - 42659167 -TGAGTTT i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 57486 8 + 1056298 CAAGTGCT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82810936 572 + 104043685 I e canFam3.chr10 46083465 586 - 69331447 I e proCoq1.NW_012136747v1 5075755 98 - 6317780 I e micMur3.chr7 5711807 109 + 108171978 I a score=824809.000000 s hg38.chr22_GL383582v2_alt 75338 93 + 162811 CCTCTGGAGGTGTAACCCT-GG--ACTGCCTCTGGACCAGTT-TGGGG-AAA-GGGGAACTCTAGAATGTGACATTCATGCATAC----------------------------ACACAAATGGACTG s panTro5.chr22 28855679 93 + 37823149 CCTCTGGAGGTGTAACCCT-GG--ACTGCCTCTGGACCAGTT-TGGGG-AAA-GGGGAACTCTAGAATGTGACATTCATGCATAC----------------------------ACACAAATGGGCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130318 93 + 50109623 CCTCTGGAGGTGTAACCCT-GG--ACTGCCTCTGGACCAGTT-TGGGG-AAA-GGGGAACTCTAGAATGTGACATTCATGCATAC----------------------------ACACAAATGGGCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152578 91 + 4464012 CCTCTGGAGGTGTAACCCT-GG--ACTGCCTCTGGACCAGTT-TGGGG-AAA-GGGGAACTCTAGAATGTGACATTCATGCAT------------------------------ACACAAATGGGCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648716 93 - 115148730 CCTCTGGAGGTGTAAGCCC-AG--ACTGCCTCTGGACCAGTT-TGGGG-AAA-GGGGAACTCTAGAATGTGACATTCATACATAC----------------------------ACACAAATGGGCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264081 90 + 92844088 CCTCTGGAGGTGTAATCCC-GG--ACCACCTCTAGACCAGTC-TGGGA-AAA-AGGTAA-TCTAGAATGTGACATTCATTCAT------------------------------ACACAAATGGGCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609092 90 - 96509753 CCTCTGGAGGTGTAATCCC-GG--ACCACCTCTAGACCAGTC-TGGGA-AAA-AGGTAA-TCTAGAATGTGACATTCATTCAT------------------------------ACACAAATGGGCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100773 90 - 13098629 CCTCTGGAGGTGTAATCCC-GG--ACCACCTCTAGACCAGTC-TGGGA-AAA-AGGTAA-TCTAGAATGTGACATTCATTCAT------------------------------ACACAAATGGGCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067352 90 - 4483953 CCTCTGGAGGTATAATCCC-GG--ACCACCTCTAGACCAGTC-TGGGA-AAA-AGGTAA-TCTAGAATGTGACATTCATTCAT------------------------------ACACAAATGGGCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698112 90 + 33263144 CCTCTGGAGGTGTAATGCT-GG--ACCACCTTTAGACCAGTC-TGGGA-AAA-AGGGAA-TCTAGAATGTGACATTCATTCAT------------------------------ACACAAATGGGCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13972297 90 - 14338769 CCTCTGGAGGTATAATCCC-GG--ACCACCTCTAGACCAGTC-TGGGA-AAA-AGGTAA-TCTAGAATGTGACATTCATTCAT------------------------------ACACAAATGGGCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915646 90 + 1946073 CCTCTGGAGGTGTAATCCC-GG--ACCATCTCTGGACCAGTC-TGGGA-AAA-ACGGAA-TCTACAATGTGACATTCATTCAT------------------------------ACACAAATGGGCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945079 92 - 2117846 cctctggaggtataaccccagg--acctcctctggactagtt-tgaaa-aaa-gggggactcgagaatgTGACATTCATTCAT------------------------------ACACAAATGGGCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859883 93 - 16357246 CCTCTGGAGGTATAAGCCCAGG--ACCTCTTCTGGACCAGTTGTGAAA-AAA-GGGGGACTCTAGAATGTGACATTCATTCAT------------------------------ACACAAATGGGCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342631 92 - 1807191 CCTCTGGAGGTATAACCCCAGG--ACCTCCTCTGGACCAGTC-TGAAA-AAA-GGGGGACTCTAGAATGTGACATTCATTCAT------------------------------ACACAAATGGACTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21135 92 + 5963231 cctctggaggtataaccccagg--acatcctctggatcagtc-tgaaa-aaaggggggactctagaatgTGACATTCATTCAT------------------------------ACACAAATGGGCT- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36286800 121 - 42659167 C--CTGGAGATGTACTCCAGGG--GCTTTTTCTGGCCCAGCC-TGGGGTAAG-GGGTGACTCTACAACTTGATACTTATTCTTTTTTCCGCTGTGtttttttgcagtttttggccagggctgggctt i otoGar3.GL873526 C 0 I 90 s mm10.chr15 82811508 76 + 104043685 CTTTCAGAGGAGTAATCCC-AGTAGCACCCCCTGGATGAACC-TAGGG-TTG-GAGTGA-----------------CACTCAT------------------------------CTGTGGATGGGCCA i mm10.chr15 I 572 C 0 s dasNov3.JH570235 57494 81 + 1056298 --CCTCACAGTATAATCCCAGG--ACCTGCTC----CTGGAC-TGGGT-GCA-GTGGGATGCCAGGACATGACA-----GAAC------------------------------ACATGGATGGGCCG i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46083465 586 - 69331447 I e proCoq1.NW_012136747v1 5075755 98 - 6317780 I e micMur3.chr7 5711807 109 + 108171978 I a score=32015.000000 s hg38.chr22_GL383582v2_alt 75431 2 + 162811 TG s panTro5.chr22 28855772 2 + 37823149 TG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130411 2 + 50109623 TG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152669 2 + 4464012 TG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648809 2 - 115148730 TG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264171 2 + 92844088 TG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609182 2 - 96509753 TG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100863 2 - 13098629 TG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067442 2 - 4483953 TG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698202 2 + 33263144 TG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13972387 2 - 14338769 TG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915736 2 + 1946073 TG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945171 2 - 2117846 TG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859976 2 - 16357246 TG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342723 2 - 1807191 TG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21227 2 + 5963231 TG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5075853 2 - 6317780 TG i proCoq1.NW_012136747v1 I 98 C 0 s otoGar3.GL873526 36287011 2 - 42659167 TG i otoGar3.GL873526 I 90 C 0 s mm10.chr15 82811584 2 + 104043685 TC i mm10.chr15 C 0 C 0 s dasNov3.JH570235 57575 2 + 1056298 TG i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46083465 586 - 69331447 I e micMur3.chr7 5711807 109 + 108171978 I a score=383420.000000 s hg38.chr22_GL383582v2_alt 75433 28 + 162811 -------------------------------------------TGATGTCCAGCTCCAGGGGCA---GGGGGGC s panTro5.chr22 28855774 28 + 37823149 -------------------------------------------TGATGTCCAGCTCCAGGGGCA---GGGGGGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130413 28 + 50109623 -------------------------------------------TGATGTCCAGCTCCAGGGGCA---GGGGAGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152671 28 + 4464012 -------------------------------------------TGATGTCCAGCTCCAGGGGCA---GGGGGGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648811 28 - 115148730 -------------------------------------------TGATGTCCAGCTCCAGGGGCA---GGGGGGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264173 28 + 92844088 -------------------------------------------TGACATCCAGTTCCAGGGGCA---GGGGCGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609184 28 - 96509753 -------------------------------------------TGACATCCAGTTCCAGGGGCA---GGGGCGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100865 28 - 13098629 -------------------------------------------TGACATCCAGTTCCAGGGGCA---GGGGCGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067444 28 - 4483953 -------------------------------------------TGACATCCAGTTCCAGGGGCA---GGGGCGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698204 28 + 33263144 -------------------------------------------TGACATCCAGTTCCAGGGGCA---GGGGCGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13972389 28 - 14338769 -------------------------------------------TGACATCCAGTTCCAGGGGCA---GGGGCGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915738 28 + 1946073 -------------------------------------------TGACACCCAGTTCCAGGGGCA---GGGGCGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945173 28 - 2117846 -------------------------------------------TGATGTCCAGCTCCAGGGGCA---GGGGGGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8859978 28 - 16357246 -------------------------------------------TGATGTCCAGCTCCAGGGGCA---AGGGGGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342725 28 - 1807191 -------------------------------------------TGATGTCCAGCTCCAGGGGCA---GGGGGGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21229 27 + 5963231 -------------------------------------------CGATGTCCAGCTCCAGGGGCA----GGGGTC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5711916 28 + 108171978 -------------------------------------------TGATGTCCAGCTCCAGGGGCA---GGGAGGC i micMur3.chr7 I 109 I 383 s proCoq1.NW_012136747v1 5075855 28 - 6317780 -------------------------------------------TGACGTCCAGCTCCAGGGGCA---GGGAGGC i proCoq1.NW_012136747v1 C 0 I 4 s otoGar3.GL873526 36287013 28 - 42659167 -------------------------------------------TGATGTCCAGCTCCAGGGGCA---GGGAGGC i otoGar3.GL873526 C 0 I 2 s mm10.chr15 82811586 26 + 104043685 ------------------------------------------------TGCTGCCCCAGAGGGAACTGGGAGGA i mm10.chr15 C 0 I 1 s dasNov3.JH570235 57577 71 + 1056298 GGATGTCCCTGCTATGTAACATCTAACTACGGAGCCTGCTTAGGGAGGCTCAGCTCCAGGGGTG---AGGAGGC i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46083465 586 - 69331447 I a score=551369.000000 s hg38.chr22_GL383582v2_alt 75461 44 + 162811 CACGCCCCGTTCCCTGCCTTGCTC--AGCGTCCATCCATGGCTGTT s panTro5.chr22 28855802 44 + 37823149 CACTCCCCGTTCCCTGCCTTGCTC--AGCGTCCATCCATGGCTGTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130441 44 + 50109623 CACTCCCCGTTCCCTGCCTTGCTC--AGCGTCCATCCATGGCTGTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152699 44 + 4464012 CACTCCCCCTTCCCTGCCTTGCTC--AGCGTCCATCCATGGCTGTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648839 44 - 115148730 CACTCCCCCTTCCCTGCCTTGCTC--AGCGTCCATCCATGGCTGTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264201 44 + 92844088 CACTCCCCGTGCCCCGCTTTGCTC--AGCTTCCATCCATGGCTGTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609212 44 - 96509753 CACTCCCCGTGTCCCGCTTTGCTC--AGCTTCCATCCATGGCTGTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100893 44 - 13098629 CACTCCCCGTGCCCCGCTTTGCTC--AGCTTCCATCCATGGCTGTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067472 44 - 4483953 CACTCCCCGTGCCCCGCCTTGCTC--AGCTTCCATCCATGGCTGTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698232 44 + 33263144 CACTCCCCGTGCCCTGCCTTGCTC--AGCTTCCATCCATGGCTGTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13972417 44 - 14338769 CACTCCCCGTGCCCTGCCTTGCTC--AGCTTCCATCCATGGCTGTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915766 44 + 1946073 CACTCCCCATGCCCCGCCTTGCTC--AGCTTCCATCCATGGCTGTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945201 44 - 2117846 CACTCCCCCTTCCCCGCCTTGCTT--AGCTTCCATCCGTGGCTGTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8860006 44 - 16357246 CACTCCCCCTTCCCCGCCTTGCTC--AGCTTCCATCCATGGCTGTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342753 44 - 1807191 CACTCCTCCTTCCCTGCCTTGCTC--AGCTTCCATCCATGGCTGTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21256 44 + 5963231 CACTCCCCCTTCCCCGCCTTGCTC--AGCTTCCATCCGTGGCTGTT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5075887 43 - 6317780 -CCCGCCCTTTCCCTGTCTTGCTC--AGCTTCCTTCCATGGCTGTT i proCoq1.NW_012136747v1 I 4 I 361 s otoGar3.GL873526 36287043 43 - 42659167 -CTCACCCTTCCCTGACCCTGCTC--AGGTTCCTTCCATGGCTGTT i otoGar3.GL873526 I 2 C 0 s mm10.chr15 82811613 27 + 104043685 -----GCCATCCCTTTACTT--------------TCCATGGCTGTT i mm10.chr15 I 1 C 0 s dasNov3.JH570235 57648 46 + 1056298 TGCTGCCCTTTTCCCACCTTGCTCGGAGCTCCCTTCCTCAGCGGTT i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46083465 586 - 69331447 I e micMur3.chr7 5711944 383 + 108171978 I a score=2160465.000000 s hg38.chr22_GL383582v2_alt 75505 222 + 162811 CTGTGCAGGGTACA-----------------TAG-----------------------CATCCAGGATGCAGCATTAGCCCTGATCAAGGTTAT-GCTTCCCATGTGCTGGACCACAGGGC-CTGTTAGGGCAAGCT-GGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGAGCTGGGTATAGGGAC--TCCACTGTC-AAAAGCCCTGCCAACCAATG----ACA-CAAGCCAGCAAGGCAA----CCCCCTTGGCACAAAGAGA----------------------------------CAGTGGGCAAC s panTro5.chr22 28855846 222 + 37823149 CTGTGCAGGGTACA-----------------TAG-----------------------CATCCAGGATGCAGCATCAGCCCTGATCAAGGTTAT-GCTTCCCATGTGCTGGACCACAGGGC-CTGTTAGGGCAAGCT-GGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGAGCTGGGTATAGGGAC--TCCACTGTC-AAAAGCCCTGCCAACCAATG----ACA-CAAGCCAGCAAGGCAA----CCCCCTTGGCACAAGGAGA----------------------------------CAGTGGGCAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130485 222 + 50109623 CTGTGCAGGGTACA-----------------TAG-----------------------CATCCAGGATGCAGCATCAGCCCTGATCAAGGTTAT-GCTTCCCATGTGCTGGACCACAGGGC-CTGTTAGGGCAAGCT-GGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGAGCTGGGTATAGGGAC--TCCACTGTC-AAAAGCCCTGCCAACCAATG----ACA-CAAGCCAGCAAGGCAA----CCCCCTTGGCACAAGGAGA----------------------------------CAGTGGGCAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152743 223 + 4464012 CTGTGCAGGGTACA-----------------TAG-----------------------CATCCAGGATGCAGCATCAGCCCTTATCAAGGTTAT-GCTTCCCATGTGCTAGACCACAGGGC-CTGTTAGGGCAAGCT-GGGGCCTCCTTGTTTAATTCGCAACAGGAGGAAGAGCTGGGTATAGGGAC--TCCACTGTCAAAAAGTCCTGCCAACCAATG----ACA-CAAGCCAGCAAGGCAA----CCCCCTTGGCACAAGGAGA----------------------------------CAGTGGGCAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106648883 222 - 115148730 CTGTGCAGGGTACA-----------------TAG-----------------------TATCGATGATGCAGCATCAGCCCTGATCAAGGTTAT-GCTTCCCATGTGCTGGACTACAGGGC-CTGTTAGGGGAAGCT-GGGGCCTCCTTGTTTAATTCATGACAGGAGGAAGAGCTGGGTATAGGGAT--TCCACTGTC-AAAAGCCCTGCCAACCAATG----ACA-CAAGCCAGCAAGGCAA----CCACCTTGGCACAAGGAGA----------------------------------CAGTGGGCAAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264245 218 + 92844088 CTTTGCAGGGTACG-----------------TAG-----------------------CATCCAGGATGCAGCATTAGCCCTGATCAAGGTTATAGGTTCCCATGTGCTGGACCACAGGGC-CTGTTAGGGGAAGCT-GGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGAGCTGGGCCT--------TCCACTGTC-AAAAGCCCTGCCAACCAATG----ACA-CAAGCCAGCAAGACAA-T--CCACCTTGGCAGAAGGAGA----------------------------------CAGTGGGCAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609256 218 - 96509753 CTTTGCAGGGTACG-----------------TAG-----------------------CATCCAGGATGCAGCATTAGCCCTGATCAAGGTTATAGGTTCCCATGTGCTGGACCACAGGGC-CTGTTAGGGGAAGCT-GGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGAGCTGGGCCT--------TCCACTGTC-AAAAGCCCTGCCAACCAATG----ACA-CAAGCCAGCAAGACAA-T--CCACCTTGGCAGAAGGAGA----------------------------------CAGTGGGCAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7100937 218 - 13098629 CTTTGCAGGGTACG-----------------TAG-----------------------CATCCAGGATGCAGCATTAACCCTGATCAAGGTTATAGGTTCCCATGTGCTGGACCACAGGGC-CTGTTAGGGGAAGCT-GGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGAGCTGGGCCT--------TCCACTGTC-AAAAGCCCTGCCAACCAATG----ACA-CAAGCCAGCAAGACAA-T--CCACCTTGGCAGAAGGAGA----------------------------------CAGTGGGCAAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067516 218 - 4483953 CTTTGCAGGGTATG-----------------TAG-----------------------CATCCAGGATGCAGCACTAGCCCTGATCAAGGTTATAGGTTCCCATGTGCTGGACCACAGGGC-CTGTTAGGGGAAGCT-GGGGCCTCCTTGTTTAATTCATGACAGGAGGAAGAGCTGGGCCT--------TCCACTGTC-AAAAGCCCTGCCAACCAATG----ACA-CAAGCCAGCAAGACAA-T--CCACCTTGGCAGAAGGAGA----------------------------------CAGTGGGCAAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698276 218 + 33263144 CTTTGCAGGGTACG-----------------TAG-----------------------CATCCAGGATGCAGCATTAGCCCTGATCAAGGTTATAGGTTCCCATGTGCTGGACCACAGGGC-CTGTTAGGGGAAGCT-GGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGGGCTGGGCCT--------TCCACTGTC-AAAAGCCCTGCCAACCAATG----ACA-CAAGCCAGCAAGACAA-T--CCACCTTGGCACAAGGAGA----------------------------------CAGTGGGCAAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13972461 218 - 14338769 CTTTGCAGGGTATG-----------------TAG-----------------------CATCCAGGATGCAGCATTAGCCCTGATCAAGGTTATAGGTTCCCATGTGCTGGACCACAGGGC-CTGTTAGGGGAAGCT-GGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGAGCTGGGCCT--------TCCACTGTC-AAAAGCCCTGCCAACCAATG----ACA-CAAGCCAGCAAGACAA-T--CCACCTTGGCAGAAGGAGA----------------------------------CAGTGGGCAAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 915810 218 + 1946073 CTTTGCAGGGTACG-----------------TAG-----------------------CACCCAGGATGCAGCATTAGCCCTGATCAAGGTTATAGGTTCCCATGTGCTGGACCACACGGC-CTGTTAGGGGAAGCT-GGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGAGCTGGGCCT--------TCCAATGTC-AAAAGCTCTGTCAACCAATG----ACA-CAAGCCAGCAAGACAG-T--CCACCTTGGCACAAGGAGA----------------------------------CAGTGGGCAAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945245 223 - 2117846 CTGTGCAGGGTACA-----------------TAG-----------------------TATGCAGGATGCAGCATCAGCCCCAGTCAAGGTTATTGCTTCCCATGTGCTGGATCACAGAGC-CTGTGAGGGGAACCC-AGGGCCTCCTTGTTTAATTTAGGATAGGAGGAAGAGCTGGGTATAGGGGT--CCCATTGTC-AAAAGCCCTGCCAACCAGTG----ACA-CAAACCAACAAAACCA----CGACCTTGGCAAAAGGAGC----------------------------------CAGTGGGCAAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8860050 223 - 16357246 CCGTGCAGGGTACA-----------------CAG-----------------------TACGCAGGATGCAGTGTCAGCTCCAATCAAGGTTATGGCTTCCCATGTGCTGAACCACAGAGC-CTGTAAGGGGAACCC-AGGGCCTCCTTGTTTAATTTATGACAGGAGGAAGAGCTGGGTATAGGGGT--CCCACTGTC-AAAAGCCCTGCCAACCAATG----ACA-CAAACCAACAAAACCA----CCACCTTGGCACAAGGAAA----------------------------------CAGTGGACAAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1342797 223 - 1807191 CTGTGCAGGGTACA-----------------TAG-----------------------TATGCAGGATGCAGCATCAGCCCCAATCAAGGTTATTGCTTCCCATGTGCTGGACCACAGAGC-CTGTGAGGGGAACCC-AGGGCCTCCTTGTTTAATTTATGACAGGTGGAAGAGCTGGGTATAGGGGT--CCCACTGTC-AAAAGCCCTGCAAACCAATG----ACA-CAAACTAACAAAACCA----TCACCTTAGCACAAGCAGA----------------------------------CAGTGGACAAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21300 223 + 5963231 CTGTGCAGGGTACA-----------------TAG-----------------------TATGCAGGATGCAGCATCAGCCCCAGTCAAGGTTACTGCTTCCCATGTGCTGGACCACAGAGC-CTGTGAGGGGAACCC-AGGGCCTCCTTATTTAATTTATGACAGGAGGAAGAGCTGGGTATAGGGGT--CCCACTGTC-AAAAGCCCTGCCAACCAATG----ACA-CAAACCGACAAAACCA----CCACCTTGGCACAAGGAGA----------------------------------CAGTGGGCAAC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36287086 264 - 42659167 -----GAGGGCAAG-----------------TCGAGTTGGCAGATGCCATCTCTGCACACCTGGGGCAGAGGGTCAGTTTGGATGAAGGTTACTCCTTCCTGT-CCCTGGATCACAGGGC-CTGGCAGAGGAAGGC-AGG--CTTCCTGCTTACTACATGACA---AGAAGAGCTGGGTATAGGGT---CCCACTGTC-AAAG--CCTGCTCACCAGTC----ACAGGAAGCCAGCAAGACAA-------TCTCAACACAAAGAGAGCAGCACCCACAGGTCTGCCATGCTTGTCTTTGGCAAAGGGCACA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82811640 213 + 104043685 CTGTGTAGGGCATGTGGGTAGGTGCTATTCCTAG-----------------------CATCCAGGACAGAGCATCACTTCAAATAATGGTTTCTGTTCCCTGTCTACTGCATCTCAGGAT-CTAGCAGAG-AAGCT-ATGGTCCCT-------ATCCACACCTGCAATCTAGCCCGAGAATAACAAT--CTTAGTATC-AC--------------------------TGAGCTACCGTGATGCTT--TCTCATCCCCAGAAATGGG----------------------------------AGGTGGTCTAC i mm10.chr15 C 0 C 0 s dasNov3.JH570235 57694 222 + 1056298 CACTGGAGGATGCA-----------------GGG-----------------------GAT---------GGTGGCATCCCAAATACAAGTTCTTTCTTCCCACCCTGTGGATCATGGGGAGCTGGCAGTGGAAGCCAGGGGCCTACTTGTTCACTATTCGACAAGAAGAGGA-CAGGGGACAGGCACAGGACTCTGTC-AAAG--CCTGGCTCCCCCTGTCTCAAA-GAAGTCAGTGAGACAA-TAACCATCTTAATCCAGACAGA----------------------------------GAGCGGGCAAC i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46083465 586 - 69331447 I e proCoq1.NW_012136747v1 5075930 361 - 6317780 I e micMur3.chr7 5711944 383 + 108171978 I a score=751572.000000 s hg38.chr22_GL383582v2_alt 75727 78 + 162811 CACGGGCCTGCAG------------------------------------------------AAGGACTTTTCCCCTCC-GCACT-----CCTGGCGAGG----GTCAGGTACCAGATACCTCACAGGCTGGGAGGC s panTro5.chr22 28856068 78 + 37823149 CACGGGCCTGCAG------------------------------------------------AAGGACTTTTCCCCTCC-GCACT-----CCTGGCGAGG----GTCAGGTACCAGATACCTCACAGGCTGGGAGGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130707 78 + 50109623 CACGGGCCTGCAG------------------------------------------------AAGGACTTTTCCCCTCC-GCACT-----CCTGGCGAGG----GTCAGGTACCAGATACCTCACAGGCTGGGAGGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3152966 78 + 4464012 CACGGGCCTGCAG------------------------------------------------AAGGACTTTTCCCCTCT-GCGCT-----CCTGGCGAGG----GTCAGGTACCAGATACCTCACAGGCTGGGAGGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649105 78 - 115148730 CACAGGACTGCAG------------------------------------------------AAGGACTTTTCCCCTCC-GCACT-----CCTGACGAGG----GTCAGGTACCAGATACCTCAGAGGCTGGGAGGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264463 77 + 92844088 CACAGGCCTGT-G------------------------------------------------AAGGACTTTTCCTCTCT-GCACT-----CCTGGCGAGG----GTCGGGTACCAGGTACGTCACATGCTGGGAGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609474 77 - 96509753 CACAGGCCTGT-G------------------------------------------------AAGGACTTTTCCCCTCT-GCACT-----CCTGGCGAGG----GTCGGGTACCAGGTACGTCACATGCTGGGAGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7101155 78 - 13098629 CACAGGCCTGTGG------------------------------------------------AAGGACTTTTCCCCTCT-GCACT-----CCTGGCGAGG----GTCGGGTACCAGGTACGTCACATGCTGGGAGGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067734 78 - 4483953 CACAGGCCTGTGG------------------------------------------------AAGGACTTCTCCCCTCT-GCACT-----CCTGGCGAGG----GTCGGGTACCAGGTACGTCACATGCTGGGAGGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698494 78 + 33263144 CACAGGCCCGTGG------------------------------------------------AAGGACTTTTCCCCTCT-GCACT-----CCTGGCGAGG----GTCGGGTACCAGGTACGTCACATGCTGGGAGGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13972679 78 - 14338769 CACAGGCCTGTGG------------------------------------------------AAGGACTTTTCCCCTCT-GCACT-----CCTGGCGAGG----GTCGGGTACCAGGTACGTCACATGCTGGGAGGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916028 78 + 1946073 CACAGGCCTGTGG------------------------------------------------AAGGACTTTTCCCCTCT-GCACT-----CCTGGCGAGG----GTCAGGTACAAGGTACGTCACATGCTGGGAGGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945468 61 - 2117846 ------------------------------------------------------------------CTTTTCCTCTCTGGCTCT-----CCTGGTAAGG----GACAAGTACCAGGTACCTCACATGCTAGGAGGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8860273 79 - 16357246 CACAGGCCAGCTG------------------------------------------------AAGGACTTTTCCTCTCTGGCACT-----CCCGGTGAGG----GACAAGTACCAGGTACCTCACATGCTAGAAGGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1343020 79 - 1807191 CACAGGCCAGCTG------------------------------------------------AAGGACTTTTCCTCTCTGGAACT-----CCCGGTGAGG----GACAAGTACCAGGTACCTCACATGCTAGCAGGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21523 79 + 5963231 CACAGGCCAGCTG------------------------------------------------AAGGACTTTTCCTCTCTGGCACT-----CCTGGTGAGG----GACAAGTACCAGGTACCTCACATGCTAGGAGGC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36287350 78 - 42659167 TAGCAGCCTGCTG------------------------------------------------AGTGG--TTTCCTCTT--ACATTCCTGGCCTGGCGAGG----GACAAGTGCTAGGTATCCCAAATGCAAGGG--T i otoGar3.GL873526 C 0 I 1 s mm10.chr15 82811853 82 + 104043685 TGGGCAACTGTTC------------------------------------------------AAAGACTTTACTTTTCTTATCCT-----CTTAGCCTGGTGGTGACAAGTGC-ATAACCCCCACATGCCAGAGAGC i mm10.chr15 C 0 C 0 s canFam3.chr10 46084051 79 - 69331447 --CACGGCTGCCC------------------------------------------------AAGGAC-CTTCCTGTCTGGCACTGCCGGCCTGCTGAGG----GACAGCTGT--GGCACCTCATACGCTGGGGGGA i canFam3.chr10 I 586 I 7 s dasNov3.JH570235 57916 132 + 1056298 TGCAGGTCAGTCGCATGGCACCCTCCTCAGAAAGAGCAGGGGAGCCGTGGGATGGCTGCCTGAGGGCCTTTCCTCTCTGGCACGCCTGGCCTGGTGAAG----GACAAATGCCAGGTACCTCACATTCTGGGAGTA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5075930 361 - 6317780 I e micMur3.chr7 5711944 383 + 108171978 I a score=1291608.000000 s hg38.chr22_GL383582v2_alt 75805 93 + 162811 ------------AGGGGCGGCATCTTTTAACC-CCAAGCCTTGGG-------TATTTTTTGCTATAAGAGACAGCTGCAGGGTCCAATCTGC-TGCCTTGACCCC-TCCAACTCC s panTro5.chr22 28856146 93 + 37823149 ------------AGGGGCGGCATCTTTTAACC-CCAAGCCTTGGG-------TATTTTTTGCTATAAGAGACAGCTGCAGGGTCCAATCTGC-TGCCTTGACCCC-TCCAACTCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130785 93 + 50109623 ------------AGGGGCGGCATCTTTTAACC-CCAAGCCTTGGG-------TATTTTTTGCTATAAGAGACAGCTGCAGGGTCCAATCTGC-TGCCTTGACCCC-TCCAACTCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153044 93 + 4464012 ------------AGGGGCGGCATCTTTTAACC-CCAAGCCTTGGG-------TATTTTTTGCTATAAGAGACAGCTGCAGGGTCCAATCTGC-TGCCTTGACCCC-TCCAACTCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649183 93 - 115148730 ------------AGGGGCGGCATCTTTTAACC-CCAAGCCTTGGA-------TATTTTTTGCTATAAGAGACAGCTGCAGGGTCCAATCTGC-TGCCTTGACCCC-TCCAACTCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264540 93 + 92844088 ------------AGGGGCAGCATCTTTTAACC-CCAAGTCTTGGG-------TATTTTTTGCTATAAGAGACAGCTACAGGGTTCAATCTGC-TGCCTTGACCTC-TCCAACTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609551 93 - 96509753 ------------AGGGGCAGCATCTTTTAACC-CCAAGTCTTGGG-------TATTTTTTGCTATAAGAGACAGCTACAGGGTTCAATCTGC-TGCCTTGACCTC-TCCAACTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7101233 93 - 13098629 ------------AGGGGCAGCATCTTTTAACC-CCAAGTCTTGGG-------TATTTTTTGCTATAAGAGACAGCTACAGGGTTCAATCTGC-TGCCTTGACCTC-TCCAACTCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067812 93 - 4483953 ------------AGGGGCAGCATCTTTTAACC-CCAAGTCTTGGG-------TATTTTTTGCTATAAGAGACAGCTAGAGGGTTCAATCTGC-TGCCTTGACCTC-TCCAACTCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698572 94 + 33263144 ------------AGGGGCAGCATCTTTTAACCTCCAAGTCTTGGG-------TATTTTTTGCTATAAGAGACAGCTACAGGGTTCAATCTGC-TGCCTTGACCTC-TCCAACTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13972757 93 - 14338769 ------------AGGGGCAGCATCTTTTAACC-CCAAGTCTTGGG-------TATTTTTTGCTATAAGAGACAGCTACAGGGTTCAATCTGC-TGCCTTGACCTC-TCCAACTCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916106 92 + 1946073 ------------AGGGGCAGCATCTTTTAACC-CCAAGTCTTGGG-------TA-TATTTGCTATAAGAGACAGCTACAGGGTTCAATCTGC-TGCCTTGACCTC-TCCAACTCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945529 93 - 2117846 ------------GGAGGTGGCATGTTTTAACC-CCAAGCCTTGGG-------TATTTTTTGCTGTAAGAGGCAGGTGCAAGGTCCAATCTGC-TGCCTTGACCCC-TAAGATTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8860352 93 - 16357246 ------------AGGGGTGGCATGTTTTAACC-CCAAGCCTTGGG-------TATTTTTTGCTGTAAGAGGCAGGTGCAGGGTCCAATCTGC-TGCCTTGACCCC-TACAACTCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1343099 93 - 1807191 ------------GGGGGCGGCATGTTTTAACC-CAAAGCCTTGGG-------TATTTTTTGCTGTAAGCGGCAGGTGCAGGGTCCAGTCTGC-TTCCTTGACTCC-TACAACTCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21602 93 + 5963231 ------------GGGGGCAGCATGTTTTAACC-CCAAGCCTTGGG-------TATTTTTTGCTATAAGAGGCAGGTGCAAGGTCCAATCTGC-TGCCTTGACCCT-TACAACTCC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5712327 93 + 108171978 ------------AGGGGCAGCATTTTTTAACC-CTCAGCCTTGGG-------TATCTTCTGCTAGACAGGGCAGCTGCAGGGTCCAATTTGC-AGCCTTGACCCC-TCCAGCTCC i micMur3.chr7 I 383 I 261 s proCoq1.NW_012136747v1 5076291 93 - 6317780 ------------AGGGGCAGCATCTCTTAACC-CTCAGCCTTGCG-------TATTTTCTGCTAGATGGGGCAGCTGCAGGGTCCAATCTGC-AGCCTTGACCCC-TCCAGCTCC i proCoq1.NW_012136747v1 I 361 I 3 s otoGar3.GL873526 36287429 101 - 42659167 ------------GAGGACAGCATCTTCTGACC-CCTAGCCTTGGGTATTGGTTATTCTTTGCTACACAGGACAGCTACAGGGTCCAGTCTGT-AGCTTTGACCCCACCCAGCTCC i otoGar3.GL873526 I 1 I 3 s mm10.chr15 82811935 54 + 104043685 ---------------------ATCTTCTGTCC-TCTAGCTCTGG--------CACGTTCTGCTAGACAGAGCAGTTGTAG----------------------CTC-T-------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46084137 85 - 69331447 ------------AGGGGTTAAATTTCCTGTCT-CCAGCCCCCAGC-------TTTTCTTT-------AGGGTGGGAGCAGGGTCCAACCTTC-AGCATTGACCCC--CCAGCTCC i canFam3.chr10 I 7 I 7 s dasNov3.JH570235 58048 106 + 1056298 GAGGAAAGGATTGGATGGTGTTTCTTCTAGCT-CCCAGCCCTGGA-------TGATTTCTGCTATTCAGAACAGCTGCAGGGTCCAAGCCACAAGCCTTGAGCCC-TCCAGCTCT i dasNov3.JH570235 C 0 C 0 a score=2676763.000000 s hg38.chr22_GL383582v2_alt 75898 236 + 162811 ------------CAAGAGAAACCCACAGCTAGGCATGGCAG-AT---CAACGGGct--gagagccagtgt-----------------------------------gctgtgctggcac-ttagagacatttcccaatggaat-ctcaaaaggttgg-cactgctattcctgtttttacagaagaaaccgaagtacagagacatggagtagtc-tga-tcttagtcacacagcACCTATCATATC------ACTCTGTC--AGAACATGGCGCACTAGGAG----GCAGACACACACGCACATTCGC s panTro5.chr22 28856239 236 + 37823149 ------------CAAGAGAAACCCACAGCTAGGCATGGCAG-AT---CAACGGGct--gagagccagtgt-----------------------------------gctgtgctggcac-ttagagacatttcccaatggaat-ctcaaaaggttag-cactgctattactgtttttacagaagaaaccgaagtacagagacatggagtagtc-tga-tcttagtcacacagcACCTATCATATC------ACTCTGTC--AGAACATGGCGCACTAGGAG----GCAGACACACACGCACATTCGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41130878 236 + 50109623 ------------CAAGAGAAACCCACAGCTAGGCATGGCAG-AT---CAACGGGct--gagagccagtgt-----------------------------------gctgtgctggcac-ttagagacatttcccaatggaat-ctcaaaaggttgg-cactgctattcctgtttttacagaagaaaccgaagtacagagacatggagtagtc-tga-tcttagtcacacagcACCTATCATATC------ACTCTGTC--AGAACATGGCGCACTAGGAG----GCAGACACACACGCACATTCGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153137 236 + 4464012 ------------CAAGAGAAACCCACAGCTAGGCATGGCAG-AT---CAACGGGct--gagagccagtgt-----------------------------------gctgtgctggcac-ttagagacatttcccaatggaat-ctcaaaaggttgg-cactgctattcctgtttttacagaagaaaccgaagtacagagacatggagtggtc-tga-tcttagtcacacagcACCTATCATATC------ACTCTGTC--AGAACATGGCGCACTAGGAG----GCAGGCACACACGCACATTCGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649276 235 - 115148730 ------------CCAGAGAAACCCA-GGCTAGGCATGGCAG-AC---CAACGGGct--gagagccagtgt-----------------------------------gctgtgctggcac-tcacagacatttcccaatggaat-ctcaaaaggttgg-cactgctattcatgtttttacagaagaaaccaaagcacagagacatggagtggtc-tga-ccttagtcacacagcACCTATCATATC------ACTCTGTC--AGAACACGGTGCACTAGGAG----GCAGACACACGTGCACATTCGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264633 236 + 92844088 ------------CATGAGAAACCCACAGCTAGGCATGGCAG-AC---CAACAGGct--gagagtcagtgt-----------------------------------gctgtgctggcac-ttaaagacatttcccaagggagt-ctcacaaggttgg-cactgctattcctgtttttacagaagaaactgaagcacagagatatggagtggtc-tga-ctttagtcacacagTGCCTATCAAACC------ACTCTGTC--AGAACATGGCACACCAGGAG----GCAGACACACATGCACATCCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609644 236 - 96509753 ------------CATGAGAAACCCACAGCTAGGCATGGCAG-AC---CAACAGGTT--GAGAGTCAGTGT-----------------------------------GCTGTGCTGGCAc-ttaaagacatttcccaagggagt-ctcacaaggttgg-cactgctattcctgtttttacagaagaaactgaagcacagagatatggagtggtc-tga-ctttagtcacacagTGCCTATCAAACC------ACTCTGTC--AGAACATGGCACACCAGGAG----GCAGACACACATGCACATCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7101326 235 - 13098629 ------------CATGAGAAACCCACagctaggcatggcag-ac---caacaggct--gagagtcagtgt-----------------------------------gctgtgctggcac-ttaaagacatttcccaagggagt-ctcacaaggttgg-cactgctattcctgtttttacagaagaaactgaagcacagagatatggagtggtc-tga-ctttagtcacacagtaCCTATCAAACC------ACTCTGTC--AGAACATGGCACACC-GGAG----GCAGACACACATGCACATCCAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4067905 236 - 4483953 ------------CATGAGAAACCCACAGCTAGGCATGGCAG-AC---CAACAGGCT--GAGAGTCAGTGT-----------------------------------GCTGTGCTGGCAc-ttaaagacatttcccaagggaat-ctcacaaggttgg-cactgctattcctgtttttacagaacaaactgaagcacagagatatggagtggtc-tga-ctttagtcacacagtaCCTATCAAACC------ACTCTGTC--AGAACATGGCGCACCAGGAG----GCAGACACACATGCACATCCAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698666 236 + 33263144 ------------CACGAGAAACCCACAGCTAGGCATGGCAG-AC---CAACAGGCT--GAGAGTCAGTGT-----------------------------------GCTGTGCTGGCAc-ttaaagacatttcccaagggaat-ctcacaaggttgg-cactgctattcctgtttttacagaagaaactgaagcacagagacatggagtggtc-tga-ctttagtcacacagtaCCTATCAAACC------ACTCTGTC--AGAACATGGCGCACCAGGAG----GCAGACACACACGCACATCCAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13972850 236 - 14338769 ------------CATGAGAAACCCACAGCTAGGCATGGCAG-AT---CAACAGGCT--GAGAGTCAGTGT-----------------------------------GCTGTGCTGGCAc-ttaaagacatttcccaagggaat-ctcacaaggttgg-cactgctattcctgtttttacagaacaaactgaagcacagagatatggagtggtc-tga-ctttagtcacacagtaCCTATCAAACC------ACTCTGTC--AGAACATGGCGCACCAGGAG----GCAGACACACATGCACATCCAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916198 236 + 1946073 ------------CATGAGAAACCCACAGCTAGGCATGGCAG-AC---CAACAGGCT--GAGAGCCAGGGT-----------------------------------GCTGTGCTGGCAc-ttaaagacatttcccaagggaat-ctcacaaggttgg-cactgctattcctatttttacagaagaaactgaagcacagagacatggagtggtc-tga-ctttagtcacacagtaCCTATCAAACC------ACTTTCTC--AGAACATGGCACACCAGGAG----GCAGACACACATGCACATCCAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945622 238 - 2117846 ------------CATGAGAAACGCACAGCTAGGAATGGCAG-AC---CAACGGGCTGAGAGAgccagtgt-----------------------------------gctatgctggcctattagaggcatttcctaacggaat-ctcaaaaggttgg-tactgctattcccgtgtttacagaagaaactgaaacacagaggcatggagtggtc-tga-ccttgttcacagagcACCTACCATACC------ACTCTGTC--AGAACATGGCGCACCAGAAG----GCGGA-ACACACGCACATCTAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8860445 239 - 16357246 ------------CATGAGAAACGCACAGCTAGGAATGGCAG-AC---CAATGGGCTGAGAGAGCCAATGT-----------------------------------GCTATGCTGGCCCGTAAGAGGCATTtcctaacggaat-ctcacaaggttgg-tactgctattcccgtgtttacagaaacaaccgaaacacagagacagggagtggtcttga-ccttgttcacagagcACCTACCATACC------ACTCTGTC--AGAACATGGCGCACCAGAAG----GCAGA-ACACACGCACATCTGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1343192 238 - 1807191 ------------CATGAGAAATGCACAGCTAGGAATGGCAG-AC---CAACGGGCTGAGAGAGCCAATGT-----------------------------------GCTATGCTGGCCCATAAGAGGCATTtcctaacggaat-ctcacaaggttgg-tactgccattcccgtgtttacagaaacaactgaaacacagagacatggagtggtc-tga-ccttgttcacagagcACCTACCATACC------ACTCTGTC--AGAACATGGTGCACCAGAAG----GCAGA-ACACACACACATCTGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21695 238 + 5963231 ------------CAAGAGAAACGCACAGCTAGGAATGGCAG-AC---CAACGGGCTGAGAGAGCCAATGT-----------------------------------GTTATGCTGGTCCACTAGAGGCATTTCCTAATGGaat-ctcacgacgttgg-tactgctattcccgtgtttacagaagaaaccgaaacacagagacatgaagtggtc-tga-ccttgttcacagagcacctaccatacc------actctgtc--agaacATGGCGCACCAGAAG----GCAGA-ACACATGCACATCTGC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5076387 252 - 6317780 ------------TAGTAGCAAGGCATAGGCAGGCATGGCAG-AC---CCGCAGGCT--GTGAGCCAGCGTGCCCAG--------------------CGTGTC---Tctgtgctggcacgttagacacattttctaacagaatgctcgcaaggttgg-cattgttattcttctttttagaaaagaaactgaagcacagagacattaagtggcc-tga-ccttggtcacatggcACTTTCCATACC------ACTGTGCCTGAGAAGGTGGGGCACCAGGAG----GCAGACACACACGCACGTCCAC i proCoq1.NW_012136747v1 I 3 C 0 s otoGar3.GL873526 36287533 234 - 42659167 ------------TATTAGCATGGCTCAGGCAGGCAGGGCAG-GT---CCGTGGGCT--AAGAGCCGGCGCACCCAG--------------------CATG-----TCTGTGTAGGCACCTGGGAGACACTttctaacagaatcctagcaaggttgc-cattgttattccctcttttagtaaagaaactgaggcacagaga------------------ctgggtcacagggcactgtccacacc------actctgcctgaggaagtggggtgccaggaG----GCAGACACGCATGCACATCCAC i otoGar3.GL873526 I 3 C 0 s mm10.chr15 82811989 215 + 104043685 ---------------CAGAAACACTGAGCTGGACA--GCAGCAG---CAGCATGCT--TAG--------------------------------------------TATTTGCTGAGGC-------------CTCATCAAATC-CTCATTGAGTT---CATCACTATTCTT-TCTTTACAAAAGAAACAGAAGCATAGAGATACTAAGTAGTTTTAA-CCTCAGTTTCAAAGCCCCTTCCTCACC------ATTCTGTGTGAGAAAGTGGGGTACCAGTAGATCAGGACACACATATGGACACTCAC i mm10.chr15 C 0 C 0 s canFam3.chr10 46084229 240 - 69331447 ---------------------------------CACGGCAG-GCCAGCAGCAGGCCTCGAGAGCCAGCGCCCCAGG-ACTGGCACAAGCCTTACCCCATGCCA-GGCTGCGCGGACACCTTAGAGACATTTCTTAACTGAATCCTCACAAGGTTGGCCACAGCTATTTC--TCTTCACAGAGAAAATGAAA--ACAGAAACATGAAGTGGTC-TGT-CCCTGCTCAGGCAGCACTT----------------TCTGTG--AGAAACCAGAGCACTGAGAA----GCAGGTGCACTTGTGACCCT-- i canFam3.chr10 I 7 C 0 s dasNov3.JH570235 58154 289 + 1056298 AGCTCCTGCTAGGCAGAGAAACACGCTGTCAGGCCTGGCAA-AA---GACTTGGCTGGGAGAGCCA-TGCACCCGGAACTTGCTGGCATCTCTCCCtgtgccagggctgttcaggtactttaggaatatttcttaattgaatccttgtgaggttag-cattgttattcctatttttacagaagaaacagaa-cacagaga--ttaaatagcc-tgattcctaggcacacagcACTTTCCACACCCTACTTCCTTTATG--AGAAAGTGGGGTGCCAGGAA----G-AGACACACACATACACACAC i dasNov3.JH570235 C 0 I 164 e micMur3.chr7 5712420 261 + 108171978 I a score=86455.000000 s hg38.chr22_GL383582v2_alt 76134 7 + 162811 TGTCTGT s panTro5.chr22 28856475 7 + 37823149 TGTCTGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131114 7 + 50109623 TGTCTGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153373 7 + 4464012 TGTCTGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649511 7 - 115148730 TGTCTGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264869 7 + 92844088 TGTCTGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609880 7 - 96509753 TGTCTGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7101561 7 - 13098629 TGTCTGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068141 7 - 4483953 TGTCTGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698902 7 + 33263144 TGTCTGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973086 7 - 14338769 TGTCTGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916434 7 + 1946073 TGTCGGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945860 7 - 2117846 TGTCTGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8860684 7 - 16357246 CGTCTGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1343430 7 - 1807191 TGTCTGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21933 7 + 5963231 TGTCTAT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5076639 7 - 6317780 TATCCCC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36287767 7 - 42659167 TGTCTCT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82812204 7 + 104043685 TGTCCCT i mm10.chr15 C 0 C 0 e dasNov3.JH570235 58443 164 + 1056298 I e canFam3.chr10 46084469 0 - 69331447 C e micMur3.chr7 5712420 261 + 108171978 I a score=790629.000000 s hg38.chr22_GL383582v2_alt 76141 52 + 162811 TCCCTGCCTTGTCAGGGCACCCA-ATAATGGTGGCTCTCTGTCCCCAGCATGG s panTro5.chr22 28856482 52 + 37823149 TCCCTGCCTTGTCAGGGCACCCA-ATAATGGTGGCTCTCTGTCCCCAGCATGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131121 52 + 50109623 TCCCTGCCTTGTCAGGGCACCCA-ATAATGGTGGCTCTCTGTCCCCAGCATGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153380 52 + 4464012 TCCCTGCCTTGTCAGGGCACCCA-ATAATGGTGGCTCTCTGTCCCCAGCATGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649518 52 - 115148730 TCCCTGCCTTGTCAGGGCACCCA-ATAATGGCGGCTCTCTATCCCCAGCATGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264876 52 + 92844088 TCCCTGCCTTGTCAGGGCACCCA-ATAATGGTGGCTCTCTGTCCCCAGCATAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609887 52 - 96509753 TCCCTGCCTTGTCAGGGCACCCA-ATAATGGTGGCTCTCTGTCCCCAGCATGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7101568 52 - 13098629 TCCCTGCCTTGTCAGGGCACCCA-ATAATGGTGGCTCTCTGTCCCCAGCATGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068148 52 - 4483953 TCCCTGCCTTGTGAGGGCACCCA-ATAATGGTGGCTCTCTGTCCCCAGCATGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698909 52 + 33263144 TCCCTGCCTTGTCAGGGCACCCA-ATAATGGCGGCTCTCTGTCCCCAGCATGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973093 52 - 14338769 TCCCTGCCTTGTCAGGGCACCCA-ATAATGGTGGCTCTCTGTCCCCAGCATGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916441 52 + 1946073 TCCCTGCCTTGTCAGGGCACCCA-ATAATGGCAGCTCTCTGTCCCCAGCATGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945867 52 - 2117846 TCCCTGCCTTGCCAGGGCACCCA-ATAATCGTGGCTCTCTGTCCCCAGCATGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8860691 52 - 16357246 TCCCTGCCTTGTCAGGGCACGCA-ATAATCGTGGCTGTCTGTCCCCAGCATGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1343437 52 - 1807191 TCCCTGCCTTGTCAGGGCACCCA-ATAATCGTGGCTCTCTATCCCCAGCACGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21940 52 + 5963231 TCCCTGCCTTGTTAGGGCACCCA-ATAATTGTGGCTCTCTGTCCCCAGCATGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5712681 52 + 108171978 TCCCTGCCTTGTTGGAGCACCCA-ATAATGGTGACTCTCTGTCCCCAGCATGG i micMur3.chr7 I 261 C 0 s proCoq1.NW_012136747v1 5076646 52 - 6317780 TCCCTGCCTTGTCGGGGCACCCA-ATAATGGTGACTCTCTGTCCCCAGCATGG i proCoq1.NW_012136747v1 C 0 I 405 s otoGar3.GL873526 36287774 36 - 42659167 GTCCTCGATCACCAGGGTTCCTGCACAATG-----------------CCATGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82812211 45 + 104043685 TTCCTGCCTTGTGTAGGTCCCTG-TTAATGGTGGCTCTCGATC-------TGA i mm10.chr15 C 0 C 0 s canFam3.chr10 46084469 52 - 69331447 TCCCTGCCCTGTCAGGGTACCCA-GTGACAGCAGCTCTCTGTCCCTAGAATGG i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 58443 164 + 1056298 I a score=618634.000000 s hg38.chr22_GL383582v2_alt 76193 59 + 162811 GGCCCAAG-ATGAGTCCTCCTTTA------GTCAGAGGTGTGATTCTATCCCC-AGTCACCAGGGCT s panTro5.chr22 28856534 59 + 37823149 GGCCCAAG-ATGAGTCCTCCTTTA------GTTAGAGGTGTGATTCTATCCCC-AGTCACCAGGGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131173 59 + 50109623 GGCCCAAG-ATGAGTCCTCCTTTA------GTTAGAGGTGTGATTCTATCCCC-AGTCACCAGGGCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153432 59 + 4464012 GGCCCAAG-ATGAGTCCTCCTTTA------GTTAGAGTTGTGATTCTATCCCC-AGTCACCAGGGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649570 59 - 115148730 GGCCCAAG-ATGAGCCCTCCTTTA------GTTAGAGGTGTGGTTCTATCCCC-AGTCACCAGGGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264928 59 + 92844088 GGCCCAAG-ATGAGCCCTCCTTTA------GTTAGAGGTGTGATTCCAACCCC-AGTCACCAGGGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609939 59 - 96509753 GGCCCAAG-ATGAGCCCTCCTTTA------GTTAGAGGTGTGATTCCAACCCC-AGTCACCAGGGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7101620 59 - 13098629 GACCCAAG-ATGAGCCCTCCTTTA------GTTAGAGGTGTGATTCCAACCCC-AGTCACCAGGGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068200 59 - 4483953 GGCCCAAG-ATGAGCCCTCCTTTA------GTTAGAGGTGTGATTCCAACCCC-AGTCACCAGGGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24698961 59 + 33263144 GGCCCAAG-ATGAGCCCTCCTTTA------GTTAGAGGTGTGATTCCAACCCC-AGTCACCAGGGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973145 59 - 14338769 GGCCCAAG-ATGAGCCCTCCTTTA------GTTAGAGGTGTGATTCCAACCCC-AGTCACCAGGGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916493 59 + 1946073 GGCCCAAG-ATGAGCCCTCCTTTA------GTAAGAGGTGTGATTCCATCCCC-AGTCACCAGGGCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945919 60 - 2117846 GCCCCAAG-ATGAGCCCTCCTTTA------GTTAGAGGTGTGATTCTATCCCCAAGTCATCAGGGCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8860743 60 - 16357246 ACCCCAAG-ATGAGCCCTCCTTTA------GTTAGAGGTGTGATTCTATCCCCAAGTCATCAGGGCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1343489 60 - 1807191 GCCCCAAG-ATGAGCCCTCCTTTA------GTTAGAGGTGTGATTCTATCCCCAAGTCATCAGGGCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 21992 60 + 5963231 GCCCCAAG-ATGAGCCCTCCTTTA------GTTAGAGGTATGATTCTATCCCCAAGTCATCAGGGCT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5712733 60 + 108171978 ACACCAAG-ACAAGCACTCCTTTA-----GGGCAGAGGTGTGTTTCTGTCCCC-AGTCACTGGGGCT i micMur3.chr7 C 0 I 337 s otoGar3.GL873526 36287810 13 - 42659167 ------------------------------------------------------TGCAACCTGGGCC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82812256 64 + 104043685 -TCCTGAGTATGAGTGTTCCTTGAGGACAGGACAGTGGTATGATTCTGTCTCT-GACCATAAGGTT- i mm10.chr15 C 0 C 0 s canFam3.chr10 46084521 41 - 69331447 ACCCTGAG-ACGAAACATTCTCCG------------------------TCCCC-GATCACTCCGTCC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 58443 164 + 1056298 I e proCoq1.NW_012136747v1 5076698 405 - 6317780 I a score=2457785.000000 s hg38.chr22_GL383582v2_alt 76252 230 + 162811 TCTACCA--------CA-AATGAAGGACGGTGACCACCCTCAATGTCA--CTGCTGAACTGGGAAACCAGGAAAAGCTATATGC---------------CTTGTGGGAACAGCACATAAAA--AA---CATTTCAGATGGACAGGACTGGATGCAGTGAGTCCATCCTCTCCCTCCAAGAGCTGAATGGAATGGTTCA-------ACCTCAATGGACCTGAGACGACT-CTCTTCA-ATGGGTGAGGCCACTTCATCA--CT--GTGCTTCAAC s panTro5.chr22 28856593 230 + 37823149 TCTACCA--------CA-AATGAAGGACGGTGACCACCCTCAATGTCA--CTGCTGAACTGGGAAACCAGGAAAAGCTATCTGC---------------CTTGTGGGAACAGCACATAAAA--AA---CATTTCAGATGGACAGGACTGGATGCAGTGAGTCCATCCTCTCCCTCCAAGAGCTGAATGGAATGGTTCA-------ACCTCAATGGACCTGAGACGACT-CTCTTCA-ATGGGTGAGGCCACTTCATCA--CT--GTGCTTCAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131232 229 + 50109623 TCTACCA--------CA-AATGAAGGACGGTGACCACCCTCAATGTCA--CTGCTGAACTGGGAAACCAGGAAAAGCTATCTGC---------------CTTGTGGGAACAGCACATAAAA--AA----ATTTCAGATGGACAGGACTGGATGCAGTGAGTCCATCCTCTCCCTCCAAGAGCTGAATGGAATGGTTCA-------ACCTCAATGGACCTGAGACGACT-CTCTTCA-ATGGGTGAGGCCACTTCATCA--CT--GTGCTTCAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153491 232 + 4464012 TCTACCA--------CA-AATGAAGGATGGTGACCACCCTCAGTGTCACTCTGCTGAACTGGGAAACCAGGAAAAGCTATCTGC---------------CTTGTGGGAACAGCACATAAAA--AA---CATTTCAGATGGACAGGACTGGATGCAGTGAGTCCATCCTCTCCCTCCAAGAGCTGAATGGAATGGTTCA-------ACCTCAATGGACCTGAGACGACT-CTCTTCA-ATGGGTGAGGCCACTTCATCA--CT--GTGCTTCAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649629 232 - 115148730 TCTACCA--------CA-CATGAACGACAGTGACCACCCTCAATGTCACTCTGCTGAACTGGGAAACCAGGAAAAGGTATCTGC---------------CTTGTGGGAACAGCACATAAAA--AA---CATTTCAGATGGACAGGACTGGATGCAGTGAGTCCATCCCTTCCCTCCAAGAGCTGAATGGAATGGTTCA-------ACCTCAATGGACCTGAGACGACG-CTCTACA-ATGGGTGAGGCCACTTCATCA--CT--GTGCTTCAAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84264987 224 + 92844088 TCTACCA--------CA-AATGAAGGATGGTGACCACCCTCAATGTCACTCTGCTGAACTGGGAAACCAGGAAAAGGTATCTGC---------------CTTGTGGG-ACAGCACATAAAA--AA---CATTTCAGATGGACAGGACTGGATGCAGTGCGTCTATCCTCTCCCTCCAAGAGCT-----GAATGGTTCA-------ACTTCAATGGACCTGAGACGA---CTCTATA-ATGGGTGAGGCCACTTCATCA--CT--GTGCTTCAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87609998 224 - 96509753 TCTACCA--------CA-AATGAAGGATGGTGACCACCCTCAATGTCACTCTGCTGAACTGGGAAACCAGGAAAAGGTATCTGC---------------CTTGTGGG-ACAGCACATAAAA--AA---CATTTCAGATGGACAGGACTGGATGCAGTGCGTCTATCCTCTCCCTCCAAGAACT-----GAATGGTTCA-------ACTTCAATGGACCTGAGACGA---CTCTATA-ATGGGTGAGGCCACTTCATCA--CT--GTGCTTCAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7101679 224 - 13098629 TCTACCA--------CA-AATGAAGGATGGTGACCACCCTCAATGTCACTCTGCTGAACTGGGAAACCAGGAAAAGGTATCTGC---------------CTTGTGGG-ACAGCACATAAAA--AA---CATTTCAGATGGACAGGACTGGATGCAGTGCGTCTATCCTCTCCCTCCAAGAGCT-----GAATGGTTCA-------ACTTCAATGGACCTGAGACGA---CTCTATA-ATGGGTGAGGCCACTTCATCA--CT--GTGCTTCAAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068259 225 - 4483953 TCTACCA--------CA-AATGAAGGATGGTGACCACCCTCAATGTCACTCTGCTGAACTGGGAAACCAGGAAAAGGTATCTGC---------------CTTGTGGGAACAGCACATAAAA--AA---CATTTCAGATGGACAGGACTGGATGCAGTGCGTCTATCCTCTCCCTCCAAGAGCT-----GAATGGTTCA-------ACCTCAATGGACCTGAGACGA---CTCTATA-ATGGGTGAGGCCACTTCATCA--CT--GTGCTTCAAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699020 225 + 33263144 TCTACCA--------CA-AATGAAGGATGGTGACCACCCTCAATGTCACTCTGCTGAACTGGGAAACCAGGAAATGGTATCTGG---------------CTTGTGGGAACAGCACATAAAA--AA---CATTTCAGATGGACAGGACTGGATGCAGTGCGTCTATCCTCTCCCTCCAAGAGCT-----GAATGGTTCA-------ACCTCAATGGACCTGAGACGA---CTCTATA-ATGGGTGAGGCCACTTCATCA--CT--GTGCTTCAAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973204 225 - 14338769 TCTACCA--------CA-AATGAAGGATGGTGACCACCCTCAATGTCACTCTGCTGAACTGGGAAACCAGGAAAAGGTATCTGC---------------CTTGTGGGAACAGCACATAAAA--AA---CATTTCAGATGGACAGGACTGGATGCAGTGCGTCTATCCTCTCCCTCCAAGAGCT-----GAATGGTTCA-------ACCTCAATGGACCTGAGACGA---CTCTATA-ATGGGTGAGGCCACTTCATCA--CT--GTGCTTCAAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916552 227 + 1946073 TCTACCA--------CA-AATGAAGGATGGTGACCACCCTCAATGTCACTCTGCTGAACTGGGAAACCAGGAAAAGGTATCTGC---------------CTTGTGGGAACAGCACATAAAA--AA---CATTTCAGATGGACAGGACTGGATGCAGTACGTCCATCCTCTCCCTCCAAGAGCT-----GAATGGTTCA-------ACTTCAATGGACCTGAGACGACT-CTCTACA-ATGGGTGAGGCCACTTCATCA--CT--GTGCTTCAAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1945979 223 - 2117846 TCTACCA--------CA-AATGAAGGATGGTGACCACCCTCAATGTTAGTCTGCTAAATTGGGGAACGAGGAAAAGGCATCTGT---------------CTTGTGGGAACAGCATGT------AA---CATTTCAGATGGACAGGACTGGATGCAGCGCGTCCACCCTCTCCATCCAAGAGGT-----AAATGGTTCA-------ACCTCAATGGACTTGAGACTATC-CTCCACA-ATGGGTAAGGCCACTTCATTA--CT--GTGTTTTGAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8860803 223 - 16357246 TCTACCA--------CA-AATGAAGGATGGTGACCACCCTCAATGTTAGTCTGCTAAATTGGGGAACCAGGAAAAGGCATCTGC---------------CTTGTGGGGATAGCACGT------AA---CATTTCAGATGGACAGGACTGGATGCAGCGCGTCTACCCGCTCCGTCCAAGAGGT-----AAATGGTTCA-------ACCTCAACGGACTTGAGACTATC-CTCTACA-ATGGATGAGGCCACTTCATTA--CT--GTGCTTTGAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1343549 223 - 1807191 TCTACCA--------CA-AATGAAGGATGGTGACCACCCTCAATGTTAGTCTGCTAAATTGGGGAACCAGGAAAAGGCATCTGC---------------CTTGTGGGAATAGCACGT------AA---CATTTCAGATGGACAGGACTGGATGCAGCGTGTCCACCCTCTCCGTCCAAGAGGT-----AAATGGTTCA-------ACCTCAACGGACTTGAGACTATC-CTCTACA-ATGGATGAGTCCACTTCATTA--CC--GTGCTTTGAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 22052 223 + 5963231 TCTACCA--------CA-AATGAAGGATGGTGACCACCCTCAATGCTAGTCTGCTAAATTGGGGAACCAGGAAAAGGCATCTGC---------------CTTTTGGGAATAGCATGT------AA---CATTTCAGATGGACAGGACTGGATGCAGCGCATCCACCCTCTCCATCCAAGAGGT-----AAATGGTTCA-------ACCTCAATGGACTTGAGACTATC-CTCTACA-ATGGGTGAGGCCACTTCATTA--CT--GTGCTTTGAC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36287823 211 - 42659167 --------------------AGAAGGTCAGTGACTATCCTCAATGCAGCTCTGCTGAACTAAGAAACCAGGGAGCGGCG-CTGC---------------CTGGTCCGAACAGCATGTGAAC--AA---C--TTCAGAGGGAGCAGAATGGACACAGCATGTCTA-CTTTTCCCTCTAAGAGCT-----GAACAGTCTG-------ACCTCAGTGGACTTGAAACCAC--CTATGCA-ATGGGTCAGGTCGCTTCATCACTCT--GTGCTTCA-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82812320 245 + 104043685 TCAGCAAATACTTGGCA-CTTGAAGGATACTGACTGACCTCAATGTAA--CAGCTGAACAGACAACCCAAGAAAAAAAATTTACATTTACATTTCTTTTTTTGTGGGAAGAGTCTATAAAAAGAA---TATTCCAGACAT-TAAGACTGGATAC--TAGCTCTGTCCTTT-TATTCAATAGGT-----AACTGCTACA-------ACCTCAACAGACTTGAGGCCCA--CTCCACACAAGGGTCAGGCCTCCT-ATGA--CC--AGATACCAGC i mm10.chr15 C 0 C 0 s canFam3.chr10 46084562 234 - 69331447 ----CCG--------TACAGTCTACAGAGGCCACTGCCCTCAGCATGA--CAGCTAAAGTGAGAAAGCAGGACAAGGGTCCTGC---------------TTTGTGGGGACAGCATATGAAC--AAAGTCATCTCAGGTGGACACGACTGGATGCAGTATGTCCAGCCTTTCCCTCCAAGAATT-----GAACGGTCTACAGTCTGACCTCAACAGACTGGAAATGACCACACACCG-ATGGGTCAG-CCACTTCACCA--CTCAGTGTGTCAGC i canFam3.chr10 C 0 I 57 e dasNov3.JH570235 58443 164 + 1056298 I e proCoq1.NW_012136747v1 5076698 405 - 6317780 I e micMur3.chr7 5712793 337 + 108171978 I a score=371083.000000 s hg38.chr22_GL383582v2_alt 76482 35 + 162811 CCAGAAGG------ATGAAGCTCATTGTTCTGTTCAAGAGT s panTro5.chr22 28856823 35 + 37823149 CCAGAAGG------ATGAAGCTCATTGTTCTGTTCAAGAGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131461 35 + 50109623 CCAGAAGG------ATGAAGCTCATTGTTCTGTTCAAGAGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153723 35 + 4464012 CCAGAAGG------ATGAAGCTCATTGTTCTGTTCAAGAGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649861 35 - 115148730 CCAGAAGG------ATGAAGCTCATTGTTCTGTTCAAGAGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265211 35 + 92844088 CCAGAAGG------ATGAAGCTCATTGTTCTGTTGAAGAGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610222 35 - 96509753 CCAGAAGG------ATGAAGCTCATTGTTCTGTTGAAGAGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7101903 35 - 13098629 CCAGAAGG------ATGAAGCTCATTGTTCTGTTGAAGAGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068484 35 - 4483953 CCAGAAGG------ATGAAGCTCATTGTTCTGTTGAAGAGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699245 35 + 33263144 CCAGAAGG------ATAAAGCTCATTGTTCTGCTGAAGAGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973429 34 - 14338769 CC-GAAGG------ATGAAGCTCATTGTTCTGTTGAAGAGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916779 35 + 1946073 CCAGAAGG------ATGAAGCTCATTGTTCTGTTGAAGAGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1946202 35 - 2117846 CCAGAATG------ATGAAGCTCATTGTTCTGTTCAAGAGT i calJac3.chrUn_GL286373 C 0 I 6 s saiBol1.JH378157 8861026 35 - 16357246 CCAGAAGG------ATGAAGCTCACTGTTCTGTTCAAGAGT i saiBol1.JH378157 C 0 I 314 s cebCap1.NW_016107750v1 1343772 35 - 1807191 CCAGAACA------ACGAAGCTCATTGTTCTGTTCAAGAGT i cebCap1.NW_016107750v1 C 0 I 6 s aotNan1.NW_018512383v1 22275 35 + 5963231 CCAGAACG------ATGAAGTTCATTGTTCTGTTCAAGAGT i aotNan1.NW_018512383v1 C 0 I 6 s mm10.chr15 82812565 41 + 104043685 CCGGGAAGTACAGAATACAACTCACTGTTCTGCTCAGGGTC i mm10.chr15 C 0 C 0 e dasNov3.JH570235 58443 164 + 1056298 I e canFam3.chr10 46084796 57 - 69331447 I e otoGar3.GL873526 36288034 0 - 42659167 C e proCoq1.NW_012136747v1 5076698 405 - 6317780 I e micMur3.chr7 5712793 337 + 108171978 I a score=31705.000000 s hg38.chr22_GL383582v2_alt 76517 3 + 162811 Tgg s panTro5.chr22 28856858 3 + 37823149 Tgg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131496 3 + 50109623 Tgg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153758 3 + 4464012 Tgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649896 3 - 115148730 Tgg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265246 3 + 92844088 Tgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610257 3 - 96509753 Tgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7101938 3 - 13098629 Tgg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068519 3 - 4483953 Tgg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699280 3 + 33263144 Tgg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973463 3 - 14338769 Tgg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916814 3 + 1946073 Tgg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1946243 3 - 2117846 Ggg i calJac3.chrUn_GL286373 I 6 C 0 s saiBol1.JH378157 8861375 3 - 16357246 Tgg i saiBol1.JH378157 I 314 C 0 s cebCap1.NW_016107750v1 1343813 3 - 1807191 Cgg i cebCap1.NW_016107750v1 I 6 C 0 s aotNan1.NW_018512383v1 22316 3 + 5963231 Ggg i aotNan1.NW_018512383v1 I 6 C 0 s mm10.chr15 82812606 3 + 104043685 TGG i mm10.chr15 C 0 I 846 e dasNov3.JH570235 58443 164 + 1056298 I e canFam3.chr10 46084796 57 - 69331447 I e otoGar3.GL873526 36288034 0 - 42659167 C e proCoq1.NW_012136747v1 5076698 405 - 6317780 I e micMur3.chr7 5712793 337 + 108171978 I a score=410714.000000 s hg38.chr22_GL383582v2_alt 76520 44 + 162811 ccgggcgccgtggctcacgcctgtaatcccggcactttgagagg s panTro5.chr22 28856861 44 + 37823149 ccgggcgccgtggctcacgcctgtaatcccagcactttgagagg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131499 44 + 50109623 ccgggcgccgtggctcacgcctgtaatcccggcactttgagagg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153761 44 + 4464012 ctgggcgtcgtggctcacgcctgtaatcccagcactttgagagg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649899 44 - 115148730 ccgggcgctgtggctcacgcctgtaatcccagcactttgagagg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265249 44 + 92844088 ccgggcacggtggctcacacctgtaatcccagcactttgggagg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610260 44 - 96509753 ccgggcacggtggctcacacctgtaatcccagcactttgggagg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7101941 44 - 13098629 ccgggcacggtggctcacacctgtaatcccagcactttgggagg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068522 44 - 4483953 ccaggcacggtggctcacacctgtaatcccagcactttgggagg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699283 44 + 33263144 ccaggcacggtggctcacacctgtaatcccagcactttgggagg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973466 44 - 14338769 ccgggcacggtggctcacacctgtaatcccagcactttgggagg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916817 44 + 1946073 ccgggcacggtggctcacacctgtaatcccagcactttgggagg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1946246 43 - 2117846 ctgggcacggtggctgatgcctgtaatcccag-actttgggagg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8861378 44 - 16357246 tcgggcacggtggctcccaactgtaatcccagcactttgagagg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1343816 44 - 1807191 ctgggcacagtggctgatgcctgtaatcccagcactttgggagg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 22319 44 + 5963231 ctgggcacggtggctgatgcctgtaatcccagcactttgggagg i aotNan1.NW_018512383v1 C 0 I 1054 s otoGar3.GL873526 36288034 6 - 42659167 -------CCGTGG------------------------------- i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82812609 846 + 104043685 I e dasNov3.JH570235 58443 164 + 1056298 I e canFam3.chr10 46084796 57 - 69331447 I e proCoq1.NW_012136747v1 5076698 405 - 6317780 I e micMur3.chr7 5712793 337 + 108171978 I a score=30672.000000 s hg38.chr22_GL383582v2_alt 76564 5 + 162811 tcaag s panTro5.chr22 28856905 5 + 37823149 tcaag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131543 5 + 50109623 tcaag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153805 5 + 4464012 tcaag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649943 5 - 115148730 ccaag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265293 5 + 92844088 ccaag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610304 5 - 96509753 ccaag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7101985 5 - 13098629 ccaag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068566 5 - 4483953 ccaag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699327 5 + 33263144 ccaag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973510 5 - 14338769 ccaag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916861 5 + 1946073 ccaag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1946289 5 - 2117846 ctgag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8861422 4 - 16357246 c-gaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1343860 5 - 1807191 ccaag i cebCap1.NW_016107750v1 C 0 I 301 e aotNan1.NW_018512383v1 22363 1054 + 5963231 I e mm10.chr15 82812609 846 + 104043685 I e dasNov3.JH570235 58443 164 + 1056298 I e canFam3.chr10 46084796 57 - 69331447 I e otoGar3.GL873526 36288040 0 - 42659167 C e proCoq1.NW_012136747v1 5076698 405 - 6317780 I e micMur3.chr7 5712793 337 + 108171978 I a score=106206.000000 s hg38.chr22_GL383582v2_alt 76569 14 + 162811 gcgggaagatcact s panTro5.chr22 28856910 14 + 37823149 gcgggaagatcact i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131548 14 + 50109623 gcgggaagatcact i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153810 14 + 4464012 gcgggaagatcact i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649948 14 - 115148730 gcggaaagatcact i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265298 14 + 92844088 gcgggcagatcact i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610309 14 - 96509753 gcgggcagatcact i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7101990 14 - 13098629 gcgggcagatcact i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068571 14 - 4483953 gtgggcagatcact i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699332 14 + 33263144 gcgggcagatcact i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973515 14 - 14338769 gtgggcagatcact i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916866 14 + 1946073 gcggacagatcact i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1946294 12 - 2117846 gagcgcgaatca-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8861426 14 - 16357246 gtggggagatcact i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1344166 14 - 1807191 gtgggcagatcact i cebCap1.NW_016107750v1 I 301 C 0 s otoGar3.GL873526 36288040 14 - 42659167 GTGGGGGGAACAGG i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512383v1 22363 1054 + 5963231 I e mm10.chr15 82812609 846 + 104043685 I e dasNov3.JH570235 58443 164 + 1056298 I e canFam3.chr10 46084796 57 - 69331447 I e proCoq1.NW_012136747v1 5076698 405 - 6317780 I e micMur3.chr7 5712793 337 + 108171978 I a score=53722.000000 s hg38.chr22_GL383582v2_alt 76583 5 + 162811 tgatg s panTro5.chr22 28856924 5 + 37823149 tgatg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131562 5 + 50109623 tgatg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153824 5 + 4464012 tgatg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649962 5 - 115148730 tgatg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265312 5 + 92844088 tgatg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610323 5 - 96509753 tgatg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7102004 5 - 13098629 tgatg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068585 5 - 4483953 tgatg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699346 5 + 33263144 tgatg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973529 5 - 14338769 tgatg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916880 5 + 1946073 tgatg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1946306 5 - 2117846 tgagg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8861440 5 - 16357246 tgagg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1344180 5 - 1807191 tgagg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 23417 5 + 5963231 tgagg i aotNan1.NW_018512383v1 I 1054 C 0 s otoGar3.GL873526 36288054 5 - 42659167 TGATG i otoGar3.GL873526 C 0 I 14 e mm10.chr15 82812609 846 + 104043685 I e dasNov3.JH570235 58443 164 + 1056298 I e canFam3.chr10 46084796 57 - 69331447 I e proCoq1.NW_012136747v1 5076698 405 - 6317780 I e micMur3.chr7 5712793 337 + 108171978 I a score=816963.000000 s hg38.chr22_GL383582v2_alt 76588 96 + 162811 tcaggagttcaaggccagcctgggcaacatggtgaaaccccatctctac-aaaaaatacaaaaattagctgggcgtggtggtgcacacctgtagtcc s panTro5.chr22 28856929 96 + 37823149 tcaggagttcaaggccagcctgggcaacatggtgaaaccccatctctac-aaaaaatacaaaaattagcagggcgtggtggtgcacacctgtagtcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131567 96 + 50109623 tcacgagttcaaggccagcctgggcaacatggtgaaaccccatctctac-aaaaaatacaaaaattagcagggcgtggtggtgcacacctgtagtcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153829 96 + 4464012 tcaggagttcaaggccagcctgggcaacatggtgaaaccccatctctac-aaaaaatacaaaaattagctgggcgtggtggtgcacgcctgtagtcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106649967 96 - 115148730 tcaggagttcaaggccagcctgggcaacatggtgaaaccccatctctac-aaaaaatacaaaaattagctgggcgtggtggtgcacgcctgtagtcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265317 88 + 92844088 tgaggagttcaaggccagtctg--------ggtgaaaccccgtctctac-aaaaaatataaaaattagctgggcgtggtggtgcacacctgtagtcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610328 88 - 96509753 tgaggagttcaaggccagtctg--------ggtgaaaccccgtctctac-aaaaaatataaaaattagctgggcggggtggtgcacacctgtagtcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7102009 88 - 13098629 tgaggagttcaaggccagtctg--------ggtgaaaccccgtctctac-aaaaaatataaaaattagctgggcggggtggtacacacctgtagtcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068590 88 - 4483953 tgaggagttcaaggccagtctg--------ggtgaaaccccgtctctac-aaaaaatataaaaattagctgggcggggtggtgcacacctgtagtcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699351 88 + 33263144 tgaggagttcaaggccagtctg--------ggtgaaaccccgtctctac-aaaaaatataaaaattagctgggcggggtggtgcacgcctgtagtcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973534 88 - 14338769 tgaggagttcaaagccggtctg--------ggtgaaaccccgtctctac-aaaaaatataaaaattagctgggcggggtggtgcacacctgtagtcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916885 88 + 1946073 tgaggagttcaaggccagtctg--------ggtgaaaccccgtctctac-aaaaaatataaaaattagctgggcggggtggtgcacgcctgtagtcc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1946311 95 - 2117846 tcaggagttcgagaccagcctggccaacatggtgaaaccctgtctttac-tacaaatacaaaaa-tagctggatgtggtggtgcgcacctctaatcc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8861445 95 - 16357246 tcaggagttcaaggccagcctgggcaacatggtgaagccctgtctctat-aaaaaatacaaaaattagccaggcatggtggcccacgcctgtag-cc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1344185 96 - 1807191 tcaggagttcaaggccagcctgggcaacatggtgaaaccctgtctctataaaaaaatacaaaaattagccaggcatggtggcccacgcctgcag-cc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 23422 96 + 5963231 tcaggagttcgagaccagcctgatcaacatggtgaaaccccgtctttac-tacaaatacaaaaattagctggatgtggtggcgcgcacctgtaatcc i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82812609 846 + 104043685 I e dasNov3.JH570235 58443 164 + 1056298 I e canFam3.chr10 46084796 57 - 69331447 I e otoGar3.GL873526 36288059 14 - 42659167 I e proCoq1.NW_012136747v1 5076698 405 - 6317780 I e micMur3.chr7 5712793 337 + 108171978 I a score=590080.000000 s hg38.chr22_GL383582v2_alt 76684 67 + 162811 cagctactcgggagggctgaggcgggagaatcgcctgaaccccagagatggaggttgcagtgagccg s panTro5.chr22 28857025 67 + 37823149 cagctactcgggagggctgaggcgggagaatcgcgtgaaccccagagatggaggttgcagtgagccg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131663 67 + 50109623 cagctactcgggagggctgaggcgggagaatcgcgtgaaccccagagatggaggttgcagtgagccg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153925 67 + 4464012 cagctacttgggagggctgaggtgggagaatcacctgaaccccagagatggaggttgcagtgagctg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106650063 66 - 115148730 cagctacttggga-ggctgaggcgggagaatcgcctgaacccaagagatggaggttgcagtgagccg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265405 66 + 92844088 cagctactcggga-ggctgaggcgggagaattgcctgaaccccagagatggagactgcagtgagctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610416 66 - 96509753 cagctactcggga-ggctgaggcgggagaattgcctgaaccccagagatggagactgcagtgagctg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7102097 66 - 13098629 cagctactcggga-ggctgaggcgggagaattgcctgaaccccagagatggggactgcagtgagctg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068678 66 - 4483953 cagctactcggga-ggctgaggcgggagaattgcctgaaccccagagatggagactgcagtgagctg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699439 66 + 33263144 cagctactcggga-ggctgaggcgggagaattgcctgaaccccagagatggagactgcagtgagctg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973622 66 - 14338769 cagctacacggga-ggctgaggcgggagaattgcctgaaccccagagatggagactgcagtgagctg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 916973 66 + 1946073 cagctactcggga-ggctgaggcgggagaactgcctgaaccccagagatggagactgcagcgagctg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1946406 66 - 2117846 cagacactcagga-ggctgaggcaggagaatcgcttgaacccaggagatggaggttgcagtgaggcg i calJac3.chrUn_GL286373 C 0 I 305 s saiBol1.JH378157 8861540 66 - 16357246 cagctatgcagga-ggctgaggtaagagaatcgctcgagcctgggagacggaggttgcactgagctc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1344281 66 - 1807191 cagctatgcagga-ggctgaggtaagagaatcgctcgaacctgggagatggaggttgcactgagctc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 23518 66 + 5963231 cagacactcagga-gactgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgaggtg i aotNan1.NW_018512383v1 C 0 I 294 s canFam3.chr10 46084853 33 - 69331447 CTGCTCCGCGTGGGAGCCGAGG----------------------------------GCGGTCAGCTG i canFam3.chr10 I 57 C 0 e mm10.chr15 82812609 846 + 104043685 I e dasNov3.JH570235 58443 164 + 1056298 I e otoGar3.GL873526 36288059 14 - 42659167 I e proCoq1.NW_012136747v1 5076698 405 - 6317780 I e micMur3.chr7 5712793 337 + 108171978 I a score=458836.000000 s hg38.chr22_GL383582v2_alt 76751 66 + 162811 agatcgtgcccctgtactccagcctgggcgacaaagtgagaatccgtctc------caaaaaaaaa---------aaaaaa s panTro5.chr22 28857092 60 + 37823149 agatcgtgcccctgtactccagcctgggtgacaaagtgagaatccgtctc------caaaaaaaaa--------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131730 60 + 50109623 agatcgtgcccctgtactccagcctgggcgacaaagtgagaatccgtctc------caaaaaaaaa--------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3153992 69 + 4464012 agatcgtgcccctgtactccagcctgggcgacaaagtgagaatccgtctc------caaaaaaaaa------aaaaaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106650129 75 - 115148730 agatcgtgcccctgtactccagcctgggcgacagagtgagaatccgtttc------caaaaaaaaaaaaaaaaaaaaaaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265471 66 + 92844088 agattgggtcactgcacttcagcctgggcgacatagcgagaatccatctc-------aaaaaaaaa--------aaaaaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610482 66 - 96509753 agattgggtcactgcacttcagcctgggcgacatagcgagaatccatctc-------aaaaaaaaa--------aaaaaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7102163 70 - 13098629 agattgggtcactgcacttcagcctgggcgacatagcgagaatccatctc---aaaaaaaaaaaaa--------aaaaaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068744 65 - 4483953 agattgggtcactgcacttcagcctgggcgacatagcgagaatccatctc--------aaaaaaaa--------aaaaaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699505 67 + 33263144 agattgggtcactgcacttcagcctgggcaacatagcgagaatccatctc------aaaaaaaaaa--------aaaaaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973688 69 - 14338769 agattgggtcactgcacttcagcctgggcgacatagtgagaatccatctc------aaaaaaaaaa------agaaaaaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 917039 70 + 1946073 agattgtgtcaatgcaattcagcctaggcgacatagcgaaaatccatctc---aaaaaaaaaaaaa--------aaaaaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1946777 60 - 2117846 agattgtgtcactgtacttcagcctggacaacagagtgagactccgtctc-------------caa--------aaaaaaa i calJac3.chrUn_GL286373 I 305 C 0 s saiBol1.JH378157 8861606 73 - 16357246 agattgtgttactgtactccagcctggacaacagagcgagactccgtctcaaaaaaaaaaaaaaaa--------aaaaaaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1344347 72 - 1807191 agattgtgtcactgtactccagcctggacaacagagtgagactccgtctc-aaaaaaaaaaaaaaa--------aaaaaaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 23878 58 + 5963231 agattgtgtcactgtactccagcctggacaacagagcgagactccgtctc---------------a--------aaaaaaa i aotNan1.NW_018512383v1 I 294 C 0 s canFam3.chr10 46084886 20 - 69331447 ----------GCGGTGCCCAAGGCTGGGTG--------------------------------------------------- i canFam3.chr10 C 0 C 0 e mm10.chr15 82812609 846 + 104043685 I e dasNov3.JH570235 58443 164 + 1056298 I e otoGar3.GL873526 36288059 14 - 42659167 I e proCoq1.NW_012136747v1 5076698 405 - 6317780 I e micMur3.chr7 5712793 337 + 108171978 I a score=78914.000000 s hg38.chr22_GL383582v2_alt 76817 8 + 162811 aaGAGTCA s panTro5.chr22 28857152 6 + 37823149 --GAGTCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131790 6 + 50109623 --GAGTCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3154061 8 + 4464012 aagaGTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106650204 8 - 115148730 aaGAGTCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265537 8 + 92844088 aagaGTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610548 8 - 96509753 aagaGTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7102233 8 - 13098629 aaGAGTCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068809 8 - 4483953 aaGAGTCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699572 8 + 33263144 aagaGTCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973757 8 - 14338769 aaGAGTCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 917109 8 + 1946073 aaGAGTCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1946837 8 - 2117846 aaaaGTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8861679 8 - 16357246 aaaaGCCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1344419 8 - 1807191 aaaaGTGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 23936 8 + 5963231 aaaaGTCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36288073 8 - 42659167 AAGAGTTG i otoGar3.GL873526 I 14 C 0 e mm10.chr15 82812609 846 + 104043685 I e dasNov3.JH570235 58443 164 + 1056298 I e canFam3.chr10 46084906 0 - 69331447 C e proCoq1.NW_012136747v1 5076698 405 - 6317780 I e micMur3.chr7 5712793 337 + 108171978 I a score=390017.000000 s hg38.chr22_GL383582v2_alt 76825 51 + 162811 AGGGCCCTGACAGCTAGGAAGGAAGGCCCAAGAATGACTAGAGAGGAACA---G s panTro5.chr22 28857158 51 + 37823149 AGGGCCCTGACAGCTAGGAAGGAAGGCCCAAGAATGACTAGAGAGGAACA---G i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131796 51 + 50109623 AGGGCCCTGACAGCTAGGAAGGAAGGCCCAAGAATGACTAGAGAGGAACA---G i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3154069 51 + 4464012 AGGGCCCTGACAGCTAGGAAGGAAGGCCCAAGAATGACTAGAGAGGAACA---G i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106650212 52 - 115148730 AGGGCTCTGTCAGCTAGGAAGGAAGGCCCAAGAATGAT--GAGAAGAACAGATG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265545 54 + 92844088 AGGGCCCTGTCAGGTAGGAAGGAAGGCCCAAGAATTACTAGAGAGGAACAGATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610556 54 - 96509753 AGGGCCCTGTCAGGTAGGAAGGAAGGCCCAAGAATTACTAGAGAGGAACAGATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7102241 54 - 13098629 AGGGCCCTGTCAGGTAGGAAGGAAGGCCCAAGAATTACTAGAGAGGAACAGATG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068817 54 - 4483953 AGGGCCCTGTCAGGTAGGAAGGAAGGCCCAAGAATTACTAGAGAGGAACAGATG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699580 54 + 33263144 AGGGCCCTCTCAGGTAGGAAGGAAGGCCCAAGAATTACTAGACAGGAACAGATG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973765 54 - 14338769 AGGGCCCTGTCAGGTAGGAAGGAAGGCCCAAGAATTACTAGAGAGGAACAGATG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 917117 54 + 1946073 AGGGCCCTCTCAGCTAGGAAGGAAGGCCCAAGAATTACTAGAGAGGAACAGATG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1946845 48 - 2117846 AGGACTCTGTCAACC----AGGAAGGCCCAAGAACGAC--GAGAGAAACAGGTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8861687 48 - 16357246 AGGACCCTGTCAAGT----TGGAAGGCCCAAGAATGAC--GAGAGAAACCGGTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1344427 48 - 1807191 AGGACACTGTCAACT----AGGAAGGCCCAAGAATGAC--AAGAGAAACAGGTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 23944 48 + 5963231 AGGACCCTGTCAACT----AGGAAGGCCCAAGAATGAT--AAGAGAAACAGGTG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36288081 23 - 42659167 ATAGCC----------------------------TGAGCAGAGGGGAACAA--- i otoGar3.GL873526 C 0 I 4 s canFam3.chr10 46084906 22 - 69331447 ----------------GAGAGGAAGG-----AAATGACAAAAT----------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 58607 48 + 1056298 AGGACTCTGTGAGCT----GGGAGGGCCCAAGAATGGGTAGGGAGGAACTGG-- i dasNov3.JH570235 I 164 C 0 e mm10.chr15 82812609 846 + 104043685 I e proCoq1.NW_012136747v1 5076698 405 - 6317780 I e micMur3.chr7 5712793 337 + 108171978 I a score=913542.000000 s hg38.chr22_GL383582v2_alt 76876 87 + 162811 ATGAACAAAATCCCCA---GGA---------GATTTGTCCACCAGGCCCAGGGCCTGAACTTT--CTTTTTCTCAAACAC-AGA-TGCAATTCCAGGACAAAA s panTro5.chr22 28857209 87 + 37823149 ATGAACAAAATCCCCA---GGA---------GATTTGTCCACCAGGCCCAGGGCCTGAACTTT--CTTTTTCTCAAACAC-AGA-TGCAATTCCAGGACAAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131847 87 + 50109623 ATGAACAAAATCCCCA---GGA---------GATTTGTCCACCAGGCCCAGGGCCTGAACTTT--CTTTTTCTCAAACAC-AGA-TGCAATTCCAGGACAAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3154120 87 + 4464012 ATGAACAAAATCCCCA---GGA---------GATTTGTCCACCAGGCCCAGGGCCTGAACTTT--CTTTTTCTCAAACAC-AGA-TGCAATTCCAGGACAAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106650264 87 - 115148730 ATGAACAAAATCCCCA---AGA---------GATTTGTCCACCAGGCCCAGGGCCTGTTCTTT--CTTTTTCTCAAACGC-AGA-TGCAATTCCAGGAAGAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265599 81 + 92844088 AAGAACAAAATCCCCA---AGA---------GATTTGTTCCCCAGACCCAGGGCCCAACCCT----TTTTTCTA----AC-AGA-TGCAATTCCAGGATAAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610610 81 - 96509753 AAGAACAAAATCCCCA---AGA---------GATTTGTTCCCCGGACCCAGGGCCCAACCCT----TTTTTCTA----AC-AGA-TGCAATTCCAGGATAAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7102295 81 - 13098629 AAGAACAAAATCCCCA---AGA---------GATTTGTTCCCCAGACCCAGGGCCCAACCCT----TTTTTCTA----AC-AGA-TGCAATTCCAGGATAAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068871 81 - 4483953 ATAAACAAAATCCCCA---AGA---------GATTTGTCCCCCAGACCCAGGGCCCAACCCT----TTTTTCTA----AC-AGA-TGCAATTCCAGGATAAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699634 81 + 33263144 ATGAACAAAATCCCCA---AGA---------GATTTGTCCCCCAGACCCAGGGCCCAACCCT----TTTTTCTA----AC-AGA-TGCAATTCCAGGATAAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973819 81 - 14338769 ATGAACAAAATCCCCA---AGA---------GATTTGTCCCCCAGACCCAGGGCCCAACCCT----TTTTTCTA----AC-AGA-TGCAATTCCAGGATAAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 917171 85 + 1946073 ATGAACAAAATCCCCA---AGA---------TATTTGTCTCCCAGACCCAGGGCCCAAACCTT--CTTTTTCTA--ACAC-AGA-TGCAATTCCAGGATAAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1946893 84 - 2117846 ATGAACAAAATTCCCA---AGA---------GATTTGTCCACCAGGCACAGGGGCCAGACT-----TTCTTCTCAAACAC-ATA-TGCAATTTTAGGACAAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8861735 68 - 16357246 ATGAACAAAATCC----------------------------CCAGGCACAGGGCCCAAACT-----TTCTTCTCAGACAC-AGA-TGCAATTTTAGGACAAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1344475 83 - 1807191 ATGAACAAAATCCCAA---AGA---------GATTTGTCCACCAGGCACAGGGCCCAAACT-----TTCTTCTCAAACGC-AGA-TGCAATTTTAGGAC-AAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 23992 80 + 5963231 ATGAACAAAATCCCCA---AGA---------GATTTGTCCACCAGGCACAGGGCCCAAACT-----TTCTTCTCA----C-AGA-TGCAATTTTAGGACAAAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5713130 90 + 108171978 atgaacagaaTCCCCA---AGA---------GATTTGCCCACCAGGCCCAGGGTCCAAACTTTCCCTTTTTCTCAAACACAAGC-TGGAATTCCAGGACAAAA i micMur3.chr7 I 337 I 213 s proCoq1.NW_012136747v1 5077103 90 - 6317780 ATGAACAGAATCCCTA---AGA---------GATTTGCCCACCAGGTCCAGGGTCCAAACTTTCCCTTTTTCTCAAACACAAGC-TGGAATTCCAGGACAAAA i proCoq1.NW_012136747v1 I 405 I 216 s otoGar3.GL873526 36288108 84 - 42659167 ATGAATCAAATCCCCA---AGA---------GATTTGCCCACCAGATCTAGAGTCCAAACTTTCCCTT------AGACATGAGC-TGGAATTCCAAGACAAAA i otoGar3.GL873526 I 4 C 0 s canFam3.chr10 46084928 84 - 69331447 -----TAAAATTTCCAACCAGA---------GATCTGCCCACCAGGCCCACAGCTCAGACCT----TTTTCTTCAAACAC-AGGCTGGAATTCCAGGACAAAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 58655 97 + 1056298 GGGGAGAAAATGCTTA---AGAGGCAAAGGCGGTTTACCCACCAGGCA-AAGGCCCAAACTCTTT-TTTTTGTCAAATGT-AGGCTGAATTTCCAGGACAAAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82812609 846 + 104043685 I a score=2341636.000000 s hg38.chr22_GL383582v2_alt 76963 249 + 162811 ACAAAAAACACTTAA---------GCTCTTTCCTTAACCAGGTCTTCTAGGACACATTCCAGGAATACG--CATCGTGGTCCCCTACAGAACTTGACTCTAACCATCTTGGCCTGTGCTGGCACAGGGGTGACAATGGGAA--------GGCACAGTGACACCCTCAGGAGCGTAGGGACATGCAGGAG-GGCCAACA-GAAACAGTCCTTTCAAAACCACGCAATGCAATGGCTGCCTTGTCCTAAGGGCTAATCCCAGGAAAAGGA---------------GC s panTro5.chr22 28857296 249 + 37823149 ACAAAAAGCACTTAA---------GCTCTTTCCTTAACCAGGTCTTCTAGGACACATTCCAGGAATACG--CATCGTGGTCCCCTACAGAACTTGACTCTAACCATCTTGGCCTGTGCTGGCACAGGGGTGACAATGGGAA--------GGCACAGCGACACCCTCAGGAATGTAGGGACATGCAGGAG-GGCCAACA-GAAACAGTCCTTTCAAAACCACGCAATGCAATGGCTGCCTTGTCCTAAGGGCTAATCCCAGGAAAAGGA---------------GC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41131934 249 + 50109623 ACAAAAAATACTTAA---------GCTCTTTCCTTAACCAGGTCTTCTAGGACACATTCCAGGAATACG--CATCGTGGTCCCCTACAGAACTTGACTCTAACCATCTTGGCCTGTGCTGGCACAGGGGTGACAATGGGAA--------GGCACAGCGACACCCTCAGGAGTGTAGGGACATGCAGGAG-GGCCAACA-GAAACAGTCCTTTCAAAACCACGCAATGCAATGGCTGCCTTGTCCTAAGGGCTAATCCCAGGAAAAGGA---------------GC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3154207 249 + 4464012 ACAAAAAACACTTAA---------GCTCTTTCCTTAACCAGGTCTTCTAGGACACATTCCAGGAATATG--CATCATGGTCCCCTACAGAACTTGACTCTAACCATCTTGGCCTGTGCTGGCACAGGGGTGACAATGGGAA--------GGCACAGCGACACCCTCAGGAGTGTAGGGACATGCAGGAG-GGCCAACA-GAAACAGTCCTTTCAAAACCACGCAATGCAATGGCTGCCTTGTCCTAAGGGCTAATCCCAGGAAAAGGA---------------GC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106650351 249 - 115148730 ACAAAAAACACTTAA---------GCTCTTTCCTTAACCAGGTCTTCTAGGACACATTCCAGGAATACG--CATCATGGTCCCCTACAGAACTTGACTCTAACCATCTGCGCCTGTGCTGGCACAGGGGTGACCATGGGAA--------GGCACAGCGACACCCTCAGGAGTGTAGGGACATGCAGGAG-GGCCAACA-GAAACAGTCCTTTCAAAACCACGCAACGCAATGGCTGCCTTGTCCTAAGGGCTAATCCCAGGAAAAGGA---------------GC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265680 256 + 92844088 ACAAAAAACACTTCA---------GCTCTTTCCTTAACCAGGTCTTCTAGGACACATTCCAGGAATACAA-CATCATGGTCCCCTACAGAACTTGACTCTAACCATCTGGGCCTGTGCTGGCAGAGGGGCGACAATGGGAA--------GGCACAGTGGCACCCTCAGGAG---------ATGCAGGAG-GGCCAACACAAAACAGTCCTTTCAAAACCACCCAATGCAATGGCTGCCTTTCCCTGAGGGCTAATCCCAGGGAAAGGAGCAAGGGCGG-GCAGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610691 256 - 96509753 ACAAAAAACACTTAA---------GCTCTTTCCTTAACCAGGTCTTCTAGGACACATTCCAGGAATACAA-CATCATGGTCCCCTACAGAACTTGACTCTAACCATCTGGGCCTGTGCTGGCAGAGGGGCGACAATGGGAA--------GGCACAGTGGCACCCTCAGGAG---------ATGCAGGAG-GGCCAACACAAAACAGTCCTTTCAAAACCACCCAATGCAATGGCTGCCTTTCCCTGAGGGCTAATCCCAGGGAAAGGAGCAAGGGCGG-GCAGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7102376 252 - 13098629 ACAAAAAACACTTAA---------GCTCTTTCCTTAACCAGGTCTTCTAGGACACATTCCAGGAATACAA-CATCATGGTCCCCTACAGAACTTGACTCTAACCATCTGGGCCTGTGCTGGCAGAGGGGCGACAATGGGAA--------GGCACAGTGGCACCCTCAGGAG---------ATGCAGGAG-GGCCAACACAAAACAGTCCTTTCAAAACCACCCAATGCAATGGCTGCCTTTCCCTGAGGGCTAATCCCAGGGAAAGGAGCAAGGGCG-----GGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4068952 256 - 4483953 ACAAAAAACACTTAA---------GCTCTTTCCTTAACCAGGTCTTCTAGGACACATTCCAGGAATACAA-CATCATGGTCCCCTACAGAACTCGACTCTAACCATCTGGGCCTGTGCTGGCAGAGGGGCGACAATGGAAA--------GGCACAGTGGCACCCTCAGGAG---------ATGCAGGAG-GGCCAACACAAAACAGTCCTTTCAAAACCATCCAATGCAATGGCTGCCTTTCCCTGAGGGCTAATCCCAGGGAAAGGAGCAAGGGCGG-GCAGGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699715 256 + 33263144 ACAAAAAACACTTAA---------GCT-----CTTAACCAGGTCTTCTAGGACACATTCCAGGAATACAA-CATCACGGTCCCCTACAGAACTTGACTCTAACCATCTGGGCCTGTGCTGGCAGAGGGGCGACAATGGGAA--------GGCACAGTGGCACCCTCAGGAGTATAGGGACATGCAGGAG-GGCCAACACAAAACAGTCCTTTCAAAACTACCCAATGCAATGGCTGCCTTTCCCTGAGGGCTAATCCCAGGGAAAGGGGCAA----GG-GCAGGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13973900 256 - 14338769 ACAAAAAACACTTAA---------GCTCTTTCCTTAACCAGGTCTTCTAGGACACATTCCAGGAATACAA-CATCATGGTCCCCTACAGAACTTGACTCTAACCATCTGGGCCTGTGCTGGCAGAGGGGCGACAATGGGAA--------GGCACAGTGGCACCCTCAGGAG---------ATGCAGGAG-GGCCAACACAAAACAGTCCTTTCAAAACCACCCAATGCAATGGCTGCCTTTCCCTGAGGGCTAATCCCAGGGAAAGGAGCAAGGGCGG-GCAGGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 917256 262 + 1946073 ACAAAAAACACTTAA---------GCTCTTTCCTTAACCAGGTCTTCTAGGACACATTCCAGGAATACAACCATCATGGCCCCCTACAGAACTTGACTCTAACCATCTGGGCCTGTGCTGGCAGAGGGGCGACAATGGGAA--------GGCACAGTGGCACCCTCAGGAGTATAGGGACATGCAGGAG-GGCCAACACAAAACAGTCCTTTCAAAACCACCCAATGCAATGGCTGCCTTTCCCTGAGGGCTAATCCCAGGGAAACAAGCAA----GG-GCAGGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1946977 245 - 2117846 ACAAAAAACACTTAA---------GCTGTTTCCTTAACCAGGTCTTCTAGAATACATTCCAGAAATACT--CATTGTGGTCCCCTATAGAACTTGACTATAACCATCTGGGCTGGGGCCGGCACAGGGGCATCAATGGGAA--------GGCACAGCAACACCCTCAAGGGTGTAGGGACATACAGGAG-GGCCATGA-GCAACAGTTCTTTAAAAAACTACC----CAACTGCTGCCTTGCCCTGAGGGCTAATCCCAGAGAAAGGAAC--------------- i calJac3.chrUn_GL286373 C 0 I 10 s saiBol1.JH378157 8861803 241 - 16357246 ACAAAACACACTTAA---------GCTGTTTCCTTAACCAGGTCTTCTAGAACACATTCCAGAAATAC------CGTGGTCCTCTATAGAACTTGACTCTAACCATCTGGGCTGGGGCTGGCACAGGGGCATCAATGGGAA--------GGCACAGCAACACCCTCAAGGGTGTACGGACATGTAGGAG-GGCCATCA-GCAACAGTTCTTCAAAAAACTACC----CAACTGCTGCCTTGCCCTGAGGGCTAATCCCAGAGAAAGGAGT--------------- i saiBol1.JH378157 C 0 I 9 s cebCap1.NW_016107750v1 1344558 245 - 1807191 ACAAAAAACACTTAA---------GCTGTTTCCTTAACCAGGTCTTCTAGAACACATTCCAGAAATACT--CATCGTGGTCCTCTATAGAATTTGACTCTAATCATCTGGGCTGGGGCCGACACAGGGGCATCAATGGGAA--------GACACAGCAACACCCTCAAGTGTGTACAGACATGCAGGAG-TGCCATCA-GCAACAGTTCTTTAAAAAACTACC----CAACTGCTGCCTTGCCCTGAGGGCTAATCTCAGAGAAAGGATC--------------- i cebCap1.NW_016107750v1 C 0 I 10 s aotNan1.NW_018512383v1 24072 245 + 5963231 ACAAAAAACACTTAA---------GCTGTTTCCTTAACCAGGTCTTCTAGAACACATTCCAGAAATACT--CAACGTGGTCCCCTATAGAACTTGACTCTAACCATCTGGGCTGGGGCCAGCACAGGGGCATCAATGGGAA--------GGCACAGCAACACCCTCAAGAGTGTACGGACATGCAGGAG-AGCCATCA-GCAACAGTTCTTTAAAAAACTACC----CAACTGCTGCCTTGCCCTGAGGGCTAATCCCAGAGAAAGGAGC--------------- i aotNan1.NW_018512383v1 C 0 I 867 s otoGar3.GL873526 36288192 201 - 42659167 ACAAAAAGCACTGAACCACAAATGGTTCTTTCTGTAACCAGGTCTGTCTTGACACCTTCCAGGAATATT--CATTGTGGTCCTCTACAGAACTTGACTCCAACCATCTGGGCTAGGG-----ATAGAGGCATCCCTGTG-A--------GACGCAGGGCCTGCCCTGCAAGCCCAGGGATGTGGAGGAG-GGCCGACA-GACATAGTAGTTTGAAGGTC------------------------------------------------------------------ i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46085012 219 - 69331447 ACGAAAGGCACCCAACGACAAATGATTCTTTTCCTAATCAGGTCATCCAGGGCAC-TGCCAGGAATGTT--CCTTGTGG-CCCCTACACCATGCGGCTCTACCCAC-----------------------------TGGCCA--------GGCACAG-------CCCAGG----------CATGGAACAGAGGCCAAGA-GAAACACTC--TGGAAAACCATCC----AGACTTCGGTCTTGTCCTGAGGGCTGCTCAGGGGGGCAAGGGAGGGGGGAACGCAGG- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 58752 242 + 1056298 ACAAAAAGCATGTT----------TTTATTCCCCTCACTGGGTCCTCCAGGACACATTTTGGGACTACT--CAATGTGGTCCCC-ACAGAAGATGACACTAAACATCTGGGCCAG-----GCGCAGAGGAATCAATGGGAAGATGGTGGGGCACAGACGCAACTCCCA---TCTGGGAACGTGCAGCAA-GGCCAACA-GAAACAGTTCTTTAAAAAACACCC----AAATTGCTCCCTTGCCCTGAGGGCTGAG-TGGGACAAAGGAAC--------------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82812609 846 + 104043685 I e proCoq1.NW_012136747v1 5077193 216 - 6317780 I e micMur3.chr7 5713220 213 + 108171978 I a score=666344.000000 s hg38.chr22_GL383582v2_alt 77212 75 + 162811 ---AGGCAGTGC-----TGCCCAGCAGGTTCTGGAAAACCAGCAGCCA----------------CTCGCTGATGGTGGCAATGTACTCC----------AAGTCCAAGA s panTro5.chr22 28857545 75 + 37823149 ---AGGCAGTGC-----TGCCCAGCAGGTTCTGGAAAACCAGCAGCCA----------------CTCGCTGATGGTGGCAATGTACTCC----------AAGTCCAAGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132183 75 + 50109623 ---AGGCAGTGC-----TGCCCAGCAGGTTCTGGAAAACCAGCAGCCA----------------CTCGCTGATGGTGGCAATGTACTCC----------AAGTCCAAGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3154456 75 + 4464012 ---AGGCAGTGC-----TGCCCAGCAGGTTCTGGAAAACCAGCAGCCA----------------CTTGCTGATGGTGGCAATGTACTCC----------AAGTCCAAGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106650600 75 - 115148730 ---AGGCAGTGC-----TGCCCAGTAGGTTCTGGAAAACCAGCAGCCA----------------CTCGCTGATGGTGGCAATGTACTCC----------AAGTCCAAGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84265936 75 + 92844088 ---AGGCAGTGC-----TGCCCAGCAGGTTCTGGAAAACCAGCAGTCA----------------CTCGCTGATGGTGGCAATGTACTCC----------AAGGCCAAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87610947 75 - 96509753 ---AGGCAGTGC-----TGCCCAGCAGGTTCTGGAAAACCAGCAGTCA----------------CTCGCTGATGGTGGCAATGTACTCC----------AAGGCCAACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7102628 75 - 13098629 ---AGGCAGTGC-----TGCCCAGCAGGTTCTGGAAAACCAGCAGTCA----------------CTCGCTGATGGTGGCAATGTACTCC----------AAGGCCAAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4069208 75 - 4483953 ---AGGCAGTGC-----TGCCCAGCAGGTTCTGGAAAACCAGCAGTCA----------------CTCGCTGATGGTGGCAATGTACTCC----------AAGGTCAAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24699971 75 + 33263144 ---AGGCAGTGC-----TGCCCAGCAGGTTCTGGAAAACCAGCAGTCA----------------CTCGCTGATGGTGGCAATGTACTCC----------AAGGCCAAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974156 75 - 14338769 ---AGGCAGTGC-----TGCCCAGCAGGTTCTGGAAAACCAGCAGTCA----------------CTCGCTGATGGTGGCAATGTACTCC----------AAGGTCAAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 917518 75 + 1946073 ---AGGCAGTGC-----TGCCCAGCAGGTTCTGGAAAACCAGCAGTCA----------------CTCGCTGATGGTGGCAATGTACTCC----------AAGGCCAAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1947232 76 - 2117846 ---AGGCAGTGC-----AGTCTAGCAGGTTCTGGAAAACCAGTAGCTA----------------CTTGCTGATGGTGGCAACGTACTCA---------AAAGTCCCAGA i calJac3.chrUn_GL286373 I 10 C 0 s saiBol1.JH378157 8862053 76 - 16357246 ---AGGCAGTGC-----AGCCTAGCAGGTTCTGAAAAACCAGTAGCTA----------------CCTGCTGATGGTGGCAACGTACTCA---------AAAGTCCCAGA i saiBol1.JH378157 I 9 C 0 s cebCap1.NW_016107750v1 1344813 76 - 1807191 ---AGGCAGTGC-----AGCCTAGCAGGTTCTAGAAAACCAGTAGCTA----------------CTTGCCGATGGTGGCAACATACTCA---------GAAGTCCCAGA i cebCap1.NW_016107750v1 I 10 C 0 s aotNan1.NW_018512383v1 25184 81 + 5963231 ---AGGCAGTGCAGCCTAGCCTAGCAGGTTCTGGAAAACCAGCAGCTA----------------CTTGCTGATGGTGGCAACGTACTTA---------GAAGTCCCAGA i aotNan1.NW_018512383v1 I 867 C 0 s otoGar3.GL873526 36288393 18 - 42659167 -------------------CACAACAG-----------------GCCA----------------CCTGTT--------------------------------------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46085231 54 - 69331447 ---AGGCAGTGG-----GCCCTGGTGAGTTTCAGAATGCCAGTGGC--------------------TGCTGCTGGTACCAGT--------------------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 58994 104 + 1056298 ATGGGCCAATGG-----AGCTTGGCGGTGCCTGCAATGCTGCCTACTATCATGACGAGGCATGCCACATCGTCCTTGGCAACACACTCACGGTGCACTCAAGGCCACCA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82812609 846 + 104043685 I e proCoq1.NW_012136747v1 5077193 216 - 6317780 I e micMur3.chr7 5713220 213 + 108171978 I a score=609470.000000 s hg38.chr22_GL383582v2_alt 77287 41 + 162811 GGCTTCATTTGCTCATCTGGTTCCTCTGACCCAGGAACACA s panTro5.chr22 28857620 41 + 37823149 GGCTTCATTTGCTCATCTGGTTCCTCTGACCCAGGAACACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132258 41 + 50109623 GGCTTCATTTGCTCATCTGGTTCCTCTGACCCAGGAACACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3154531 41 + 4464012 GGCTTCATTTGCTCATCTGGTTCCTCTGACCCAGGAACACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106650675 41 - 115148730 GGCTTCATTTGCTCATCTGGTTCCTCTGACCCAGGAACACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84266011 41 + 92844088 GGCTTCATTTGCTCATCTAATTCCTCTGACCCAGGAACACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87611022 41 - 96509753 GGCTTCATTTGCTCATCTAATTCCTCTGACCCAGGAACACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7102703 41 - 13098629 GGCTTCATTTGCTCATCTAATTCCTCTGACCCAGGAACACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4069283 41 - 4483953 GGCTTCATTTGCTCATCTGATTCCTCTGACCCAGGAACACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700046 41 + 33263144 GGCTTCATTTGCTCATCTGATTCCTCTGACCCAGGAACACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974231 41 - 14338769 GGCTTCATTTGCTCATCTGATTCCTCTGACCCAGGAACACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 917593 41 + 1946073 GGCTTCATTTGCTCATCTGATTCCTCTGACCCAGGAACACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1947308 41 - 2117846 GGCTTCATTTGCTCATCTGGTTCCTGTGACCCAGGAACACA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862129 41 - 16357246 GGCTTTATTTGCTCATCTGGTTCCTGTGACCCAGGAACACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1344889 41 - 1807191 GGCTTCATTTGCTCATCTGGTTCCTGTGACCCAGGAACACA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 25265 41 + 5963231 GGCTTCATTTGCTCATTTGGTTCCTGTGACCCAGGAACACA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5713433 41 + 108171978 GGCTCCATTTGCTCATTTGGTTCCTGTGACCCAAGAACACA i micMur3.chr7 I 213 I 414 s proCoq1.NW_012136747v1 5077409 41 - 6317780 GGCTCCATTTGCTCGTTTGGTTCCTGTGACCCAAGAACACA i proCoq1.NW_012136747v1 I 216 I 719 s canFam3.chr10 46085285 31 - 69331447 --------TGGCTCATTTGGTTTCTGTGACCT--GAACGCT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 59098 41 + 1056298 GGCTTCATCTGCTTATTTGGTTCCTGAGACCCAAGCACTGG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82812609 846 + 104043685 I e otoGar3.GL873526 36288411 0 - 42659167 C a score=1532213.000000 s hg38.chr22_GL383582v2_alt 77328 175 + 162811 TGGAATGGCTTCCACCCACCTCCCC--ACTTTGCTCTGATCCCTTCACTGCCAGCCCTACTCCCCGGAAGAGGAA-----AGA--------GAAAGGCA----------------------CC--------ACACTCAAC-G--CTCTATCAAGAAGGCACTCAGCAGCC-------------------CCCACTT--------GACTTCTCAA----ATGGCGTGGCA-----------GCCGAGGGGCCTTCTCCGGAAATTA s panTro5.chr22 28857661 175 + 37823149 TGGAATGGCTTCCACCCACCTCCCC--ACTTTGCTCTGATCCCTTCACTGCCAGCCCTACTCCCCGGAAGAGGAA-----AGA--------GAAAGGCA----------------------CC--------ACACTCAAC-G--CTCTATCAAGAAGGCACTCAGCAGCC-------------------CCCACTT--------GACTTCTCAA----ATGGTGTGGCA-----------ACCGAGGGGCCTTCTCCGGAAATTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132299 175 + 50109623 TGGAATGGCTTCCACCCACCTCCCC--ACTTTGCTCTGATCCCTTCACTGCCAGCCCTACTCCCCGCAAGAGGAA-----AGA--------GAAAGGCA----------------------CC--------ACACTCAAC-G--CTCTATCAAGAAGGCACTCAGCAGCC-------------------CCCACTT--------GACTTCTCAA----ATGGTGTGGCA-----------GCCGAGGGGCCTTCTCCGGAAATTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3154572 175 + 4464012 TGGAATGGCTTCCACCCACCTCCCC--ACTTTGCTCTGATCCCTTCACTGCCAGCCCTACTCCCCGGAAGAGGAA-----AGA--------GAAAGGCA----------------------CC--------ACACTCAAC-G--CTCTATCAAGAAGGCACTTAGCAGCC-------------------CCCACTT--------GACTTCTCAA----ATGGCGTGGCA-----------GCCGAGGGGCCTTCTCCGGAAATTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106650716 156 - 115148730 TGGAATGGCTTCCACCCACCTCCCC--ACTTTGCTCTGATCCCTTCACTGCCAACCCTACTCCCCAGAAGAGGAA-----AGA--------GAAAGGCA----------------------CT--------ACACTCAAC-G--CTCTATCAAGAAGGCACTTAGCAGCC-------------------CCCACTT--------GACTTCTCAA----AT------------------------------TTTCTCCGGAAATTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84266052 170 + 92844088 TGGAATGGCTTCCACCCACCTCCCCC-ACTTTGCTCTGATCCCTCCACTGCCAGCCCTACTCCCTGGAAGAGGAA-----AGAG-------GAAAGGCA----------------------CT--------ACACTCAAT-G--CTCTATCAAGAAGGCACTTAG--------------------------CACCT--------GACTTCTCAA----ATGGTGCGGCA-----------GCCCAGGGGCCTTTTCTGGAAATTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87611063 170 - 96509753 TGGAATGGCTTCCACCCACCTCCCCC-ACTTTGCTCTGATCCCTCCATTGCCAGCCCTACTCCCTGGAAGAGGAA-----AGAG-------GAAAGGCA----------------------CT--------ACACTCAAT-G--CTCTATCAAGAAGGCACTTAG--------------------------CACCT--------GACTTCTCAA----ATGGTGCGGCA-----------GCCCAGGGGCCTTTTCTGGAAATTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7102744 170 - 13098629 TGGAATGGCTTCCACCCACCTCCCCC-ACTTTGCTCTGATCCCTCCACTGCCAGCCCTACTCCCTGGAAGAGGAA-----AGAG-------GAAAGGCA----------------------CT--------ACACTCAAT-G--CTCTATCAAGAAGGCACTTAG--------------------------CACCT--------GACTTCTCAA----ATGGTGCGGCA-----------GCCCAGGGGCCTTTTCTGGAAATTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4069324 170 - 4483953 TGGAATGGCTTCCACCCACCTCCCCC-ACTTTGCTCTGATCCCTCCACTGCCAGCCCTACTCCCTGGAAGAGGAA-----AGAG-------GAAAGGCA----------------------CT--------ACACTCAAT-G--CTCTATCAAGAAGGCACTTAG--------------------------CACCT--------GACTTCTCAA----ATGGTGCGGCA-----------GCCCAGGGGCCTTCTCTGGAAATTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700087 170 + 33263144 TGGAATGGCTTCCACCCACCTCCCCC-ACTTTGCTCTGATCCCTCCACTGCCACCCCTACTCCCTGGAAGAGGAA-----AGAG-------GAAAGGCA----------------------CT--------ACACTCAAT-G--CTCTATCAAGAAGGCACTTAG--------------------------CACCT--------GACTTCTCAA----ATGGTGCGGCA-----------GCCCAGGGGCCTTCTCTGGAAATTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974272 170 - 14338769 TGGAATGGCTTCCACCCACCTCCCCC-ACTTTGCTCTGATCCCTCCACTGCCAGCCCTACTCCCTGGAAGAGGAA-----AGAG-------GAAAGGCA----------------------CT--------ACACTCAAT-G--CTCTATCAAGAAGGCACTTAG--------------------------CACCT--------GACTTCTCAA----ATGGTGCGGCA-----------GCCCAGGGGCCTTCTCTGGAAATTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 917634 171 + 1946073 TGGAATGGCTTCCACCCACCTCCCCCAACTTTGCTCTGATCCCTCCACTGACAGCTCTACTCCCTGGAAGAGTAA-----AGAG-------GAAAGGCA----------------------CT--------ACACTCAAT-G--TTCTATCAAGAAGGCACTTAG--------------------------CACCT--------GACTTCTCAA----ATGGTGCGGCA-----------GCCCAGGGGCCTTCTCCGGAAATTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1947349 191 - 2117846 TTGAATGGATTCCACCTACCTCCCT--GCTTTG--CTGATTCCTCTACTGCCAGCCCTACTCCCTGGAAGAGGAA-----AGA--------GAAAGGCA----GGCACTACACTCAATGCCCT--------ACACTCAAT-G--CCCTATCAAGAAGGTACTTATCAGCC-------------------CCCACCT--------GACTTCTCAA----ATGGTGCGGCA-----------GCCGAGGGGCCTTCTCTGCAAGTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862170 176 - 16357246 TGGAATGGATTCCACCTACCTCCCT--GCTTTG--CTGATTCCTCCACTGCCAGCCCTACTCCCTGGAAGAGGAA-----AGA--------GAAAGGCA----GGCA--------------CT--------ACACTCAAC-G--CCCTATCAAGAA-GTACTTATCAGCC-------------------CCCACCT--------GACTTCTCAA----ATGGTGCAGCA-----------GCCGAGGGGCCTTCTCTGCAAGTCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1344930 179 - 1807191 TGGAATGGATTCCACCTACCTCCCT--GCTTTGCTCTGATTCCTCCACTGCCAGCCCTACTCCCTGGAAGAGGAA-----AGA--------GAAAGGCA----GGCA--------------CT--------ACACTTAAC-G--CCCTATCAAGACGCTACTTATCAGCC-------------------CCCACCT--------GACTTCTCAA----ACGGTGCGGCA-----------GCCGACGGGCCTTCTCTGCAAGTCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 25306 150 + 5963231 TGGAATGGATTCCACCTATCTCCCT--GCTTTGCTCTCATTCCTCTACTGCCAGCCCTACTCCCTGGAAGAGGAA-----AGA--------GAAAAGCA----GGCA--------------CT--------ACACTCAAT-G--CCCTATCAAGAAGGTACTTATCAGCC-------------------CCCACCT--------GA--------------------------------------------CTTCTCTGCAAGTCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36288411 149 - 42659167 -----------------------CT--GCTTTGTTCTGACTCCTCCACTGCCAACCCTATTCCCGGGAAAAGAGA-----ACAGCACCACTGCAGAGCA----------------------CT--------CACCTCACT-C--CCCCACCAAGAACGCATTCGGAAGCC-------------------CCCAC------------------AC----AGGGCG-GGCG-----------GCACAGGGGCCTTCCCCAGAAGTCA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46085316 156 - 69331447 -------------------------------------TGTTCTTCCATCCCTGACCCCTCTCCTTGGAAGAGGAAGAGAGAAA--------AAAAGGCACAAGTGCAAAAG----------CC--------TCACTTGACAG--TCCCGCTGAGAGTGCAC------------------------------CACAG--------GCCTCTACAGCCCCAGGGCCCCACA------CTCAGACCAGGGGGGCTTCTCTGGAATTCA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 59139 222 + 1056298 TAAGATGGCTTTCAACCACCTCTCCC-ACTCAGCTCTGGCCCCTCCATTACTA-CATTACTCTCTGGAAAAG-AA-----AGA--------AAAAAGCA----------------------CTTCTGCAAAATACTCACT-GGTTTCTAGCTAAAAGAAACTCAACATCCTCATGACAAAGTCCTTATGTCCACCTGGGTTTCAGACTCATCAC----GCTGGGGAGCAGGGTCCCTGAAACAAAGAGTACTGCTCTGGAAGGTA i dasNov3.JH570235 C 0 I 124 e mm10.chr15 82812609 846 + 104043685 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5713474 414 + 108171978 I a score=42336.000000 s hg38.chr22_GL383582v2_alt 77503 3 + 162811 GTA s panTro5.chr22 28857836 3 + 37823149 GTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132474 3 + 50109623 GTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3154747 3 + 4464012 GTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106650872 3 - 115148730 GTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84266222 3 + 92844088 GTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87611233 3 - 96509753 GTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7102914 3 - 13098629 GTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4069494 3 - 4483953 GTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700257 3 + 33263144 GTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974442 3 - 14338769 GTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 917805 3 + 1946073 GTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1947540 3 - 2117846 GTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862346 3 - 16357246 GTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1345109 3 - 1807191 GTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 25456 3 + 5963231 GTA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36288560 3 - 42659167 GTA i otoGar3.GL873526 C 0 I 108 s canFam3.chr10 46085472 3 - 69331447 GGA i canFam3.chr10 C 0 I 11 s dasNov3.JH570235 59485 3 + 1056298 GTG i dasNov3.JH570235 I 124 C 0 e mm10.chr15 82812609 846 + 104043685 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5713474 414 + 108171978 I a score=991855.000000 s hg38.chr22_GL383582v2_alt 77506 99 + 162811 ---------------GTGGTAAC------------------AAGGAGGAGGGC---------------------------------------------ACGTTC--CAGAAGGTGGT-------CAGGCACATGGTG-GTGCCGGAAGGGACACG--------TCTAGCGTAGCTG------TG--TGAG----TCAAACTCCTGAG--- s panTro5.chr22 28857839 99 + 37823149 ---------------GTGGTAAC------------------AAGGAGGAGGGC---------------------------------------------ACGTTC--CAGAAGGTGGT-------CAGGCACATGGTG-GTGCCGGAAGGGACACG--------TCTAGCGTAGCTG------TG--TGAG----TCAAACTCCTGAG--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132477 99 + 50109623 ---------------GTGGTAAC------------------AAGGAGGAGGGC---------------------------------------------ACGTTC--CAGAAGGTGGT-------CAGGCACATGGTG-GTGCCGGAAGGGACACG--------TCTAGTGTAGCTG------TG--TGAG----TCAAACTCCTGAG--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3154750 99 + 4464012 ---------------GTGGTAAC------------------AAGGAGGAGAGC---------------------------------------------ACGTTC--CAGAAGGTGGT-------CAGGCACATGGTG-GTGCCGGAAGGGACACG--------TCTAGCGTAGCTG------TG--TGAG----TCAAACTCCTGAG--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106650875 99 - 115148730 ---------------GTGGTAAC------------------AAGGAGGAGGGC---------------------------------------------ATGTTC--CAGAAGGTGGT-------CAGGCACATGGTG-GTGCCAGAAGGGACAGG--------TCTAGCGTAGCTG------TG--TGGG----TCAAACTCCTGAG--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84266225 99 + 92844088 ---------------GTGGTAAC------------------AAGGGGGAGGGC---------------------------------------------ATGTTC--CAGAAGGTGAT-------CAGGCACATGGTG-GTGCCGGAAGGGACAGG--------TCTAGCGTAGCTG------TG--TGAG----TCAAACTCCTGAG--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87611236 99 - 96509753 ---------------GTGGTAAC------------------AAGGGGGAGGGC---------------------------------------------ATGTTC--CAGAAGGTGAT-------CAGGCACATGGTG-GTGCCGGAAGGGACAGG--------TCTAGCGTAGCTG------TG--TGAG----TCAAACTCCTGAG--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7102917 99 - 13098629 ---------------GTGGTAAC------------------AAGGGGGAGGGC---------------------------------------------ATGTTC--CAGAAGGTGAT-------CAGGCACATGGTG-GTGCCGGAAGGGACAGG--------TCTAGCGTAGCTG------TG--TGAG----TCAAACTCCTGAG--- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4069497 99 - 4483953 ---------------GTGGTAAC------------------AAGGGGGAGGGC---------------------------------------------ATGTTC--CAGAAGGTGAT-------CAGGCACATGGTG-GTGCCGGAAGGGACAGG--------TCTAGCGTAGCTG------TG--TGAG----TCAAACTCCTGAG--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700260 99 + 33263144 ---------------GTGGTAAC------------------AAGGGGGAGGGC---------------------------------------------ATGTTC--CAGAAGGTGAT-------CAGGCACATGGTG-GTGCCAGAAGGGACAGG--------TCTAGCGTAGCTG------TG--TGGG----TCAAACTCCTGAG--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974445 96 - 14338769 ---------------GTGGTAAC------------------AAGGGGGAGGGC---------------------------------------------ATATTC--CAGAAGGTGAT-------CAGGCACATGGTG-GTGCCGGAAGGGACAGG--------TCTAGCGTAGCTG------TG--TGAG----TCAAA---CTGAG--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 917808 99 + 1946073 ---------------GTGGTAAC------------------AAGGGGGAGCGC---------------------------------------------ATGTTC--CAGAAGGTGGT-------CAGGTACATGGTG-GTGCCGGAAGGGACAGG--------TCTAGCATAGCTG------TG--TGGG----TCAAACTCCTGAG--- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1947543 98 - 2117846 ---------------GTGGTAA-------------------AAGGGGAAGCGC---------------------------------------------ACGATC--CAGAAGGTGGT-------CAGGCACATGGTG-CTGCCGGAAGGGACAGG--------TCTAGTGTAGCTG------TG--TGGG----TCAAACTCCTGAG--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862349 98 - 16357246 ---------------GTGGTAA-------------------AAGGGGAAAGGC---------------------------------------------ACGATC--CAGAAGGTGGT-------CAGGCACATGGCA-CTGCCCGAAGGGACAGG--------TCTAGTGTAGCTG------TG--TGGG----TCATACTCCTGAG--- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1345112 98 - 1807191 ---------------GTGGTAA-------------------AAGGGGAAGGGC---------------------------------------------ACGATC--CAGAAGGTGGT-------CAGGCACATGGTG-CTGCCCGGAGGGACAGG--------TCTAGCGCAGCTG------TG--TGGG----TCAAACTCCTGAG--- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 25459 98 + 5963231 ---------------GTGGTAA-------------------AAGGGGAAGGGC---------------------------------------------ACGATC--CAGAAGGTGGT-------CAGGCACATGGCG-CTGCAGGAAGGCACAGG--------TCTAGTGGAGCTG------TG--TGGG----TCAAACTCCTGAG--- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36288671 122 - 42659167 ---------------GTGGACACCCCCG--CCGCTGGAATAAGGGGGAAGGGC---------------------------------------------ACATTCTGCAGAGGACAAT-------CTGGGGTGTTGTG-CTGCCCG-AGACACAGG--------TCTGGTGCAGCCAGAACCCTG--TGGG----TCAGACTCCTGGA--- i otoGar3.GL873526 I 108 C 0 s canFam3.chr10 46085486 177 - 69331447 ---------------GTAAGAAACCGAGGACTTCTCA----AAGGAGGAAAACTGCCTCTGTCTGAGATGAATTCTATTTTTTCCTTAAATTAGTTAGGTATTC--CAGAGAAAGGTGGAAAAACTGCCAGTTGTCA-CAGGCGGAGGGAACGTGCCACAGACTCTAGTGCGCCTG------CG--TGTGGCTCTCAGGTGCCTGGA--- i canFam3.chr10 I 11 C 0 s dasNov3.JH570235 59488 120 + 1056298 GTATTCCAGAGAAAGGTGGAAACCCCCATTGTA--------ACAAGGAGGGGC---------------------------------------------ACATTC--CA----------------CAGGGACTTGCTGTGCACCCGAAGGGACAGG--------CCTAGCAAGCTTG------TGTTTGGG----TCTTG-GCCTGCGAGA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82812609 846 + 104043685 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5713474 414 + 108171978 I a score=239850.000000 s hg38.chr22_GL383582v2_alt 77605 23 + 162811 GTCGACACAGAAGTCCTCCCATT s panTro5.chr22 28857938 23 + 37823149 GTCGACACAGAAGTCCTCCCATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132576 23 + 50109623 GTCGACACAGAAGTCCTCCCATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3154849 23 + 4464012 GTCGACACAGAAGTCCTCCCATT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106650974 23 - 115148730 GTCGACACAGAAGTCCTCCCATT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84266324 23 + 92844088 GTTGACACAGAAGTCCTCCCATT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87611335 23 - 96509753 GTTGACACAGAAGTCCTCCCATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103016 23 - 13098629 GTTGACACAGAAGTCCTCCCATT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4069596 23 - 4483953 GTTGACACAGAAGTCCTCCCATT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700359 23 + 33263144 GTTGACACAGAAGTCCTCCCATT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974541 23 - 14338769 GTTGACACAGAAGTCCTCCCATT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 917907 23 + 1946073 GCTGACACAGAAGTCCTCCCATT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1947641 20 - 2117846 GTCAACACAGAAGTCCTCCC--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862447 21 - 16357246 GTCAACACAGAAGTCCTCCCA-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1345210 21 - 1807191 GTCAACACAGAAGTCCTCCCA-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 25557 21 + 5963231 GTCAACACAGAAGTCCTCCCA-- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36288793 21 - 42659167 GGCCACGTAGGAGCCTTCTTT-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82813455 21 + 104043685 GTAGGAACAGAGGAC--CCTATT i mm10.chr15 I 846 C 0 s canFam3.chr10 46085663 23 - 69331447 GTAAACACAGAAGCCCTTCAGCT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 59608 23 + 1056298 GAAAACACTCAAGTCCTTTGTTT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5713474 414 + 108171978 I a score=172625.000000 s hg38.chr22_GL383582v2_alt 77628 12 + 162811 TGAGAGAAATGA s panTro5.chr22 28857961 12 + 37823149 TGAGAGAAATGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132599 12 + 50109623 TGAGAGAAATGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3154872 12 + 4464012 TGAGAGAAATGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106650997 12 - 115148730 TGAGAGAAATGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84266347 12 + 92844088 TGAGAGAAATGA i rheMac8.chr10 C 0 I 322 s macFas5.chr10 87611358 12 - 96509753 TGAGAGAAATGA i macFas5.chr10 C 0 I 321 s macNem1.NW_012012688v1 7103039 12 - 13098629 TGAGAGAAATGA i macNem1.NW_012012688v1 C 0 I 320 s cerAty1.NW_011999588v1 4069619 12 - 4483953 TGAGAGAAATGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700382 12 + 33263144 TGAGAGAAATGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974564 12 - 14338769 TGAGAGAAATGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 917930 12 + 1946073 TGAGAGAACTGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1947661 10 - 2117846 --AGAGAAATGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862468 11 - 16357246 -GAGAGAAATGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1345231 11 - 1807191 -GAGAGAAATGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 25578 11 + 5963231 -GAGAGAAATGA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5713888 12 + 108171978 TGAGAGAAATGA i micMur3.chr7 I 414 C 0 s otoGar3.GL873526 36288814 12 - 42659167 TGAGAGAAATGA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82813476 10 + 104043685 -TAGAGAATTA- i mm10.chr15 C 0 C 0 s canFam3.chr10 46085686 12 - 69331447 GAAGAGAAATAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 59631 12 + 1056298 AGACGCAAATAA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5077450 719 - 6317780 I a score=1574698.000000 s hg38.chr22_GL383582v2_alt 77640 118 + 162811 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCC--------ATCCTGTAGCAGCAAGTGCCACAAGGTACATTTT-GGT---TTTTCTTTTCT-----TTACAACCTATTTCCCT------TCATGCCTCAG s panTro5.chr22 28857973 118 + 37823149 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCC--------ATCCTGTAGCAGCAAGTGCCACAAGGTACATTTT-GGT---TTTTCTTTTCT-----TTACAACCTATTTCCCT------TCATGCCTCAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132611 118 + 50109623 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCC--------ATCCTGTAGCAGCAAGTGCCACAAGGTACATTTT-GGT---TTTTCTTTTCT-----TTACAACCTATTTCCCT------TCATGCCTCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3154884 118 + 4464012 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCC--------ATCCTGTAGCAGCAAGTGCCACAAGGTACATTTT-GGT---TTTTCTTTTCT-----TTACAACCTATTTCCCT------TCATGCCTCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651009 115 - 115148730 CCGCTCAATGAATAT----TTCTGAG---ACTAGTCCCCCTGCCCC--------ATCCTGTAGCAGCAAGTGCCACAAGGTACATTTT-GGT---TTTTCTTTTCT-----TTACAACGTATTTCCCT------TCATGCCTCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84266681 118 + 92844088 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCC--------ATCCTGTAGCAGTAAGTGCCACAAGGTACATTTT-TGT---TTTTCTTTTCT-----TTACAACCTATTTCCCC------TCATGCCTCAG i rheMac8.chr10 I 322 C 0 s macFas5.chr10 87611691 118 - 96509753 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCC--------ATCCTGTAGCAGTAAGTGCCACAAGGTACATTTT-TGT---TTTTCTTTTCT-----TTACAACCTATTTCCCC------TCATGCCTCAG i macFas5.chr10 I 321 C 0 s macNem1.NW_012012688v1 7103371 118 - 13098629 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCC--------ATCCTGTAGCAGTAAGTGCCACAAGGTACATTTT-TGT---TTTTCTTTTCT-----TTACAACCTATTTCCCC------TCATGCCTCAG i macNem1.NW_012012688v1 I 320 C 0 s cerAty1.NW_011999588v1 4069631 118 - 4483953 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCC--------ATCCTGTAGCAGTAAGTGCCACAAGGTACATTTT-TGT---TTTTCTTTTCT-----TTACAACCTATTTCCCC------TCATGCCTCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700394 118 + 33263144 CCCCTCAATGAGTAT----TTCTGAGACAACTAGTCCTCCTGCCCC--------ATCCTGTAGCAGTAAGTGCCACAAGGTACATTTT-TGT---TTTTCTTTTCT-----TTACAACCTATTTCCCC------TCATGCCTCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974576 118 - 14338769 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCC--------ATCCTGTAGCAGTAAGTGCCACAAGGTACATTTT-TGT---TTTTCTTTTCT-----TTACAACCTATTTCCCC------TCATGCCTCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 917942 118 + 1946073 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCC--------ATCCTGTAGCAGTAAGTGCCACAAGGTACATTTT-TGT---TTTTCTTTTCT-----TTACAACCTATTTCCCC------TCATGCCTCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1947671 122 - 2117846 CCCCTCGATGGACACAGAATTCTGAGACAATTAGTCCTCCTGCCCC--------ATCCTGTTGCAGCAAGTGCCACGAGTTACACTTT-GGT---TTTTCTTTTCT-----TTACAATCGATTTCCCT------TCATGCCTCAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862479 122 - 16357246 CCCCTCAATGAACACAGAATTCTGAGACAATTAGTCCTCCTGCCCC--------ATCCTGTAGCAGCAAGTGCCACAAGTTACACTTT-GGG---TTTTCTTTTCT-----TTACAATCTATTTTCCT------TCATGCCTCAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1345242 122 - 1807191 CCCCTCAATGAACACAGAATTCTGAGACAATTAGTCCTCCTGCCCC--------ATCCTGTAGCAGCAAGTGCCACAAGTTACACTTT-AGT---TTTCCTCTTCT-----TTACAGTCTATTTCCCT------TCATGCCTCAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 25589 122 + 5963231 CCCCTCAATGAACACAGAATTCTGAGACAATTAGTCCTCCTGCCCC--------atcctgtagcagcaagtgccacaagttaCACTTT-GGT---TTTTCTTTTCT-----TTACAATCTATTTCCCT------TCATGCCTCAG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5713900 116 + 108171978 TCCCTCAAGGGACAT----CTCTGAGACAGCTAGTCTCCCTACCCC--------ATCCTGT-------AGTGCCACAAGCTACATTTT-CAT---TTTTCTTCTCTTCTCTTCATAACCTATTTCCCC------TCATGCCTCAG i micMur3.chr7 C 0 I 157 s otoGar3.GL873526 36288826 124 - 42659167 CTTCTCAAGGGACAA----CTCTGAGATAGCTGGTCCCCCTGCCTCCTTCTGTAGTTCTGT-------AGTGCCACAAGCTACATTTCATTT---TTTTCTTCTCTTCTC-TCACCATCTATTTTCCT------TTACCCCTCAA i otoGar3.GL873526 C 0 I 20 s mm10.chr15 82813486 97 + 104043685 ------------TCC----CTCAGAGACAGCTAGTACCTCTGCCCA-----------CTGGAGCAACAAG-GCCTCTGGCCATGTAAG---------TTCCATTCT-----CTTCAGCCTACTTTTTC------TCATCCTTCAG i mm10.chr15 C 0 I 7 s canFam3.chr10 46085698 121 - 69331447 TCTCTTAATGAACAT----TTCTGAGACAAC--GTTCCCTCTCCCC--------ATCCTGTAGGAGCAAGTGCTTCAAGTGATGTTTT-GGC---TTTT-TTTTCT-----TTCCCGTCTAGTTTCCTCAGCCCTTGCGACTCCA i canFam3.chr10 C 0 I 4 s dasNov3.JH570235 59643 116 + 1056298 TCCCATAATGAGCAT----TTCTAAGACAAG----CCTGCTGCCCC--------CTCCTGTAGTAGCAAGTTCCACAAGTTACATTTC-AGTTTCTTTTCTTTTCT-----TCTCAACCTCCTTTCCG------TAAT-CCTCAG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5077450 719 - 6317780 I a score=224615.000000 s hg38.chr22_GL383582v2_alt 77758 19 + 162811 ---------TGACGCAGGGAGGGTGAAG s panTro5.chr22 28858091 19 + 37823149 ---------TGACGCAGGGAGGGTGAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132729 19 + 50109623 ---------TGACGCAGGGAGGGTGAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155002 19 + 4464012 ---------TGACGCAGGGAGGGTGAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651124 19 - 115148730 ---------TGAGGCAGGGAGTGTGAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84266799 19 + 92844088 ---------TGAGGAAGGGAGGGTGAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87611809 19 - 96509753 ---------TGAGGAAGGGAGGGTGAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103489 19 - 13098629 ---------TGAGGAAGGGAGGGTGAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4069749 19 - 4483953 ---------TGAGGAAGGGAGGGTGAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700512 19 + 33263144 ---------TGAGGAAGGGAGGGTGAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974694 19 - 14338769 ---------TGAGGAAGGGAGGGTGAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918060 19 + 1946073 ---------TGAGGAAGGCAGGGTGAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1947793 19 - 2117846 ---------TGAGGCAGGGAGGGTGAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862601 19 - 16357246 ---------TGAGGCAGGGAGGGTGAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1345364 19 - 1807191 ---------TGAGGCAGGGAGGGTGAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 25711 19 + 5963231 ---------TGAGGCAGGGAGGGTGAAG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36288970 18 - 42659167 ---------GGAGGCAGGG-GGGTCAGA i otoGar3.GL873526 I 20 C 0 s mm10.chr15 82813590 19 + 104043685 ---------CAGGGCAGAGAGGACAAAG i mm10.chr15 I 7 I 144 s canFam3.chr10 46085823 17 - 69331447 ---------GGGGGCAGGGGGTGAGA-- i canFam3.chr10 I 4 C 0 s dasNov3.JH570235 59759 28 + 1056298 TGATTCAGCCAGGGCAGGGAGGCTGAAG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5714016 157 + 108171978 I a score=1175898.000000 s hg38.chr22_GL383582v2_alt 77777 122 + 162811 -GAGCAG--CATGGAGCTCAGAGGC-----CTGCA--GCTTCTAGAGACCCCAAGTCCTATCATCCTGTTTTCACAGATGC--CTGCCAAGAGGGCCGTGACCACAATAATCCCACACAAACTCACAGCAAGCA s panTro5.chr22 28858110 122 + 37823149 -GAGCAG--CATGGAGCTCAGAGGC-----CTGCA--GCTTCTAGAGACCCCAAGTCCTATCATCCTGTTTTCACAGATGC--CTGCCAAGAGGGCCGCGACCACAATAATCCCACACAAACTCACAGCAAGCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132748 122 + 50109623 -GAGCAG--CATGGAGCTCAGAGGC-----CTGCA--GCTTCTAGAGACCCCAAGTCCTATCATCCTGTTTTCACAGATGC--CTGCCAAGAGGGCCGTGACCACAATAATCCCACACAAACTCACAGCAAGCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155021 122 + 4464012 -GAGCAG--CATGGAGCTCAGAGGC-----CTGCA--GCTTCTAGAGACCCCAAGTCCTATCATCCTGTTTTCACAGATGC--CTGCCAAGAGGGCCGTGACCACAATAATCCCACACAAACTCACAGCAAGCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651143 118 - 115148730 -GAGCAG--CATGGAGCTCAGAGGC-----CTGCA--GCTTCTAGAGA-CCCAAGTCCTATCATCCTGTTTTCACAGATGC--CTGCCAAGAGGGCCGTGACCAC---AATCCCACACAAACTCACAGCAAGCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84266818 116 + 92844088 -GAGCAA--CATGGAGCTCAGAGGC-----CTGCA--GCTTCTAGAGA-CCCAAGTCCTATCATACTGTTTTCATAGATGC--CTGCC--GAGGGCCGTGACCAC---AATCCCACACAAACTCACAGCAAGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87611828 116 - 96509753 -GAGCAA--CATGGAGCTCAGAGGC-----CTGCA--GCTTCTAGAGA-CCCAAGTCCTATCATCTTGTTTTCATAGATGC--CTGCC--GAGGGCCGTGACCAC---AATCCCACACAAACTCACAGCAAGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103508 116 - 13098629 -GAGCAA--CATGGAGCTCAGAGGC-----CTGCA--GCTTCTAGAGA-CCCAAGTCCTATCATCCTGTTTTCATAGATGC--CTGCC--GAGGGCCGTGACCAC---AATCCCACACAAACTCACAGCAAGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4069768 116 - 4483953 -GAGCAA--CATGGAGCTCAGAGGC-----CTGCA--GCTTCTAGAGA-CCCAAGTCCTATCATCCTGTTTTCATAGATGC--CTGCC--GAAGGCCGTGACCAC---AATCCCACACAAACTCACAGCAAGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700531 116 + 33263144 -GAGCAA--CATGGAGCTCAGAGGC-----CTGCA--GCTTCTAGAGA-CCCAAGTCCTATCATCCTGTTTTCACAGATGC--CTGCC--GAGGGCCGTGACCAC---AATCCCACACAAACTCACAGCAAGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974713 116 - 14338769 -GAGCAA--CATGGAGCTCAGAGGC-----CTGCA--GCTTCTAGAGA-CCCAAGTCCTATCATCCTGTTTTCATAGATGC--CTGCC--GAGGGCCGTGACCAC---AATCCCACACAAACTCACAGCAAACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918079 116 + 1946073 -GAGCAA--CATGGAGCTCAGAGGC-----CTGCA--GCTTCTAGAGA-CCCAAGTCCTATCATCCTGTTTTCACAGATGC--CTGCT--GAGGGCCATGACCAC---AATCCCACACAAACTCACAACAAGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1947812 118 - 2117846 -GAGCAG--TGTGGAGCCTGGAGGC-----CCGCA--GCTTTGAGAGA-CCCAAGTCTTACCATCCTGTTTTCACAGATGC--CTGCCGAGAGGGCCCTGACCAC---TGTCCCACACAAACTTGCAGCAAGCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862620 118 - 16357246 -GAGCAG--TGTGGAACCTGCAGGC-----CCGTG--GCTTTGTGAGA-CCCAAGTCTTACCATCCTGTTTTCACAGATGC--CTGCTGAGAGGGCCCTGATCAT---GGTCCTACACAAACTCACAACAAGCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1345383 118 - 1807191 -GAGCAG--TGTGGAGCCTGGAGGC-----CCGTG--GCTTTGAGAGA-CCCAAGTCTTACCATCCTGTTTTCACAGATGC--CTGCCGAGAGGGCCCTGACCAC---AGTCTTACACAAACTCACAGCAAGCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 25730 118 + 5963231 -GAGCAG--TGTAGAGCCTGGAGGC-----CCGTG--GCTTTGAGAGA-CCCAAGTCTTACCATCCTGTTTTCACAGATGT--CTGCCGAGAGGGCCCTGACCAC---GGTCCCACACAAACTCACAGCAAGCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36288988 112 - 42659167 -GAGCA------GGTACACAGTGACACAGACCTCA--ACTTTTAGGGA-CCCAAGTCTTATAACCTTGTTTCCACAGACAC--CTGCTG-GATAGCCCTGACCAC---------ACCCACATGCTCAGAAAAGA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46085840 115 - 69331447 -GAGCGG--GGTGTAGC--GGAGGC-----CCACT--GCCTCTGGGGA-CATCAGTCTGCTAATCCCGTTGCCACAAATGCCACTGCC---GCCGCCCTGACCAC---AAGCCCAGATACACTCACCAAAAGCA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 59787 74 + 1056298 GAAGCAAGTCAGGAGCCGTGGAGAC-----CTGTGCTGCTCCTCGATG---TAAGTC--ATAAGCCTGTTTCCACAGACAC--ACA------------------------------------------------ i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82813609 144 + 104043685 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5714016 157 + 108171978 I a score=113750.000000 s hg38.chr22_GL383582v2_alt 77899 10 + 162811 CAACTCAATC s panTro5.chr22 28858232 10 + 37823149 CAACTCAATC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132870 10 + 50109623 CAACTCAATC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155143 10 + 4464012 CAACTCAATC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651261 10 - 115148730 CAACTCAATC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84266934 10 + 92844088 AAACTCAATC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87611944 10 - 96509753 AAACTCAATC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103624 10 - 13098629 AAACTCAATC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4069884 10 - 4483953 CAACTCAATC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700647 10 + 33263144 CAACTCAATC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974829 10 - 14338769 CAATTCAATC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918195 10 + 1946073 CAACTCAATC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1947930 10 - 2117846 CAACTCAATC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862738 10 - 16357246 CAATTCAATC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1345501 10 - 1807191 CAACTCAATC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 25848 10 + 5963231 CAACTCAATC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36289100 10 - 42659167 CAGCTCAATC i otoGar3.GL873526 C 0 I 2 e mm10.chr15 82813609 144 + 104043685 I e dasNov3.JH570235 59861 0 + 1056298 C e canFam3.chr10 46085955 0 - 69331447 C e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5714016 157 + 108171978 I a score=659735.000000 s hg38.chr22_GL383582v2_alt 77909 85 + 162811 ACAAGAAt------------ttttttt---ctttttttgagacagggtctcactgtggccca-ggctggaatgtagcggcacgatcatggctcactgcagc s panTro5.chr22 28858242 86 + 37823149 ACAAGAAt------------tttttttt--ctttttttgagacagggtctcactgtggccca-ggctggaatgtagcggcatgatcatggctcactgcagc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132880 86 + 50109623 ACAAGAAt------------tttttttt--ctttttttgagacagggtctcactgtggccca-ggctggaatgtagcggcatgatcatggctcactgcagc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155153 87 + 4464012 ATAAGAAt------------tttttttt--ctttttttgagacagggtctcactgtggcccagggctggaatgtagcagcacgatcatggctcactgcagc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651271 88 - 115148730 ACAAGAAt------------tttttttttcttttttttgagacagggtctcactgtggccca-ggctggaatgcagcagcatgatcatggctcactgcagc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84266944 80 + 92844088 ACAATAA-----------------tttt--ttttttttgagacagggtctcactgtggccca--gctggaatgcagcagcacgatcatggctcactgcagc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87611954 79 - 96509753 ACAATAA------------------ttt--ttttttttgagacagggtctcactgtggccca--gctggaatgcagcagcacgatcatggctcactgcagc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103634 79 - 13098629 ACAGTAA------------------ttt--ttttttttgagacagggtctcactgtggccca--gctggaatgcagcagcacgatcatggctcactgcagc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4069894 79 - 4483953 ACAATAA------------------ttt--ttttttttgagacagggtctcactgtggccca--gctggaatgcagcagcacgatcacggctcactgcagc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700657 79 + 33263144 ACAATAA------------------ttt--ttttttttgagacagggtctcactgtggccca--gctggaatgcagcagcacgatcatggctcactgcagc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974839 79 - 14338769 ACAATAA------------------ttt--ttttttttgagacagggtctcactgtggccca--gctggaatgcagcagcacgatcatggctcactgcagc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918205 82 + 1946073 ACAATAA---------------tttttt--ttttttttgagacagggtctcactgtggccca--gctggaatgcagcggcacgatcatggctcactgcagc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1947940 88 - 2117846 ACAATAAtttctttc----------ttt--tcttttgggagacagggtctcactgtggccca-ggctggaatgtactggcaccatcatgggtcactgcagc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862748 96 - 16357246 ACAATAAtttctttct--tttttttttt--ttttttttgagacagggtctcactgtggccca-ggctggaatgtagtggcaccatcatggcttactgcagc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1345511 93 - 1807191 ACAATAACttctttt-----tttttttt--tttttttggagacagggtctcactgtggccca-ggctggaatgtagtggcgccatcatggctcactgcagc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 25858 98 + 5963231 ATAATAAtttttcttttcttttcttttt--tttttttggagacagggtctcactgtggccca-ggctgaaatgtagtggtgccatcatggctcactgcagc i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 59861 10 + 1056298 -------------------------------------------------------------------------------------------CCACTGCAGC i dasNov3.JH570235 C 0 I 33 e mm10.chr15 82813609 144 + 104043685 I e canFam3.chr10 46085955 0 - 69331447 C e otoGar3.GL873526 36289110 2 - 42659167 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5714016 157 + 108171978 I a score=286360.000000 s hg38.chr22_GL383582v2_alt 77994 32 + 162811 ctcaacctccaggtttgatcaagtgatcctcc s panTro5.chr22 28858328 32 + 37823149 ctcaacctccaggtttgatcaagtgatcctcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132966 32 + 50109623 ctcaacctccaggtttgatcaagtgatcctcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155240 32 + 4464012 ctcaacctccaggtttgatcaagtgatcctcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651359 32 - 115148730 ctcaacctccaggtttgatcaagtgatcctcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267024 32 + 92844088 ctcaacctccaggtttgatcaagcaatcctcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612033 32 - 96509753 ctcaacctccaggtttgatcaagcaatcctcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103713 32 - 13098629 ctcaacctccaggtttgatcaagcaatcttcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4069973 32 - 4483953 ctcaacctccaggtttgatcaagcaatcctcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700736 32 + 33263144 ctcaacctccagatttgatcaagcaatcctcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974918 32 - 14338769 ctcaacctccaggtttgatcaagcaatcctcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918287 32 + 1946073 ctcaacctccaggtttgatcaagcaatcctcc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948028 29 - 2117846 ctcaacctccagg---gatcaactgattctcc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862844 29 - 16357246 ctcaacctccacg---gatcaactgattctcc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1345604 29 - 1807191 ctcaacctccagg---gatcaactgattctcc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 25956 29 + 5963231 ctcaacctccagg---gatcaactgattttcc i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82813609 144 + 104043685 I e dasNov3.JH570235 59871 33 + 1056298 I e canFam3.chr10 46085955 0 - 69331447 C e otoGar3.GL873526 36289110 2 - 42659167 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5714016 157 + 108171978 I a score=187280.000000 s hg38.chr22_GL383582v2_alt 78026 17 + 162811 cagctcagcctcctgag s panTro5.chr22 28858360 17 + 37823149 cagctcagcctcctgag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41132998 17 + 50109623 cagctcagcctcctgag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155272 17 + 4464012 cagctcagccttctgag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651391 17 - 115148730 cagctcagcctcctgag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267056 17 + 92844088 cagctcagcctcctgag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612065 17 - 96509753 cagctcagcctcctgag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103745 17 - 13098629 cagctcagcctcctgag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070005 17 - 4483953 cagctcagcctcctgag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700768 17 + 33263144 cagctcagcctcctgag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974950 17 - 14338769 cagctcagcctcctgag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918319 17 + 1946073 cagctcagcctcctgag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948057 17 - 2117846 cggcttggcctcccaag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862873 17 - 16357246 tggctcggcctcctgag i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1345633 17 - 1807191 tggctcggcctcctgag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 25985 17 + 5963231 tggctcggcctcctaag i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46085955 17 - 69331447 CAACTCAATCTCTTGAG i canFam3.chr10 C 0 C 0 e mm10.chr15 82813609 144 + 104043685 I e dasNov3.JH570235 59871 33 + 1056298 I e otoGar3.GL873526 36289110 2 - 42659167 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5714016 157 + 108171978 I a score=201917.000000 s hg38.chr22_GL383582v2_alt 78043 21 + 162811 tagatgggactaaaggcatgt s panTro5.chr22 28858377 21 + 37823149 tagatgggactaaaggcatgt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133015 21 + 50109623 tagatgggactaaaggcatgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155289 21 + 4464012 tagatgggactaaaggcacgt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651408 21 - 115148730 tggatgggactaaaggcacgc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267073 21 + 92844088 tagatgggactaaaggcacgc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612082 21 - 96509753 tagatgggactaaaggcacgc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103762 21 - 13098629 tagatgggactaaaggcacgc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070022 21 - 4483953 tagatgggactaaaggcacgc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700785 21 + 33263144 tagatgggactaaaggcacgc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13974967 21 - 14338769 tagatgggactaaaggcatgc i manLeu1.NW_012102031v1 C 0 I 35 s colAng1.NW_012115588v1 918336 21 + 1946073 tagatgggactaaaggcatgc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948074 21 - 2117846 tagatgagactaaaggtgcat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862890 21 - 16357246 tagatgagactaaaggtgcgc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1345650 21 - 1807191 tagatgagactaaaggtgtgc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26002 21 + 5963231 tagatgagactaaaggtgcac i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82813609 144 + 104043685 I e dasNov3.JH570235 59871 33 + 1056298 I e canFam3.chr10 46085972 0 - 69331447 C e otoGar3.GL873526 36289110 2 - 42659167 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5714016 157 + 108171978 I a score=133921.000000 s hg38.chr22_GL383582v2_alt 78064 19 + 162811 accaccacgcacggctaat s panTro5.chr22 28858398 19 + 37823149 accaccacgcacggctaat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133036 19 + 50109623 accaccacgcacggctaat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155310 15 + 4464012 accaccatgcacggc---- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651429 18 - 115148730 accaccatacacggctaa- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267094 18 + 92844088 accaccatgcatggttaa- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612103 18 - 96509753 accaccatgcatggttaa- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103783 18 - 13098629 accaccatgcatggttaa- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070043 18 - 4483953 accaccatgcatggttaa- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700806 18 + 33263144 accaccatgcatggttaa- i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 918357 18 + 1946073 accaccatgcatggttaa- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948095 18 - 2117846 accaccatgcacagctaa- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862911 18 - 16357246 accaccatgcatggctaa- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1345671 18 - 1807191 accaccatgcatggctaa- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26023 18 + 5963231 accaccatgcacggctaa- i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82813609 144 + 104043685 I e dasNov3.JH570235 59871 33 + 1056298 I e canFam3.chr10 46085972 0 - 69331447 C e otoGar3.GL873526 36289110 2 - 42659167 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5714016 157 + 108171978 I e manLeu1.NW_012102031v1 13974988 35 - 14338769 I a score=38346.000000 s hg38.chr22_GL383582v2_alt 78083 16 + 162811 tttttttttttt---tttt s panTro5.chr22 28858417 16 + 37823149 tttttttttttt---tttt i panTro5.chr22 C 0 I 1 s panPan2.chr22 41133055 19 + 50109623 ttttttttttttaaattgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155325 12 + 4464012 ----tttttttt---tttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651447 12 - 115148730 ----tttttttt---tttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267112 10 + 92844088 ------tatttt---ttaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612121 10 - 96509753 ------tatttt---ttaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103801 10 - 13098629 ------tatttt---taaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070061 10 - 4483953 ------tatttt---ttaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700824 10 + 33263144 ------tatttt---ttaa i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 918375 10 + 1946073 ------tatttt---ttaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948113 10 - 2117846 ------tttttt---ctta i calJac3.chrUn_GL286373 C 0 I 2 s saiBol1.JH378157 8862929 10 - 16357246 ------tttttt---ctta i saiBol1.JH378157 C 0 I 2 s cebCap1.NW_016107750v1 1345689 10 - 1807191 ------tttttt---cttt i cebCap1.NW_016107750v1 C 0 I 310 s aotNan1.NW_018512383v1 26041 10 + 5963231 ------tttttt---ctta i aotNan1.NW_018512383v1 C 0 I 2 s mm10.chr15 82813753 16 + 104043685 TTGCCTTTTTTT---TTTT i mm10.chr15 I 144 C 0 e dasNov3.JH570235 59871 33 + 1056298 I e canFam3.chr10 46085972 0 - 69331447 C e otoGar3.GL873526 36289110 2 - 42659167 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5714016 157 + 108171978 I e manLeu1.NW_012102031v1 13974988 35 - 14338769 I a score=129458.000000 s hg38.chr22_GL383582v2_alt 78099 17 + 162811 --------aatgtagacacagggtc s panTro5.chr22 28858434 17 + 37823149 --------aatgtagacacagggtc i panTro5.chr22 I 1 C 0 s panPan2.chr22 41133074 13 + 50109623 ------------tagacacagggtc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155337 17 + 4464012 --------aatgtggacacagggtc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651459 17 - 115148730 --------aatgtagacacagggtc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267122 17 + 92844088 --------aatgtacagacagggtg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612131 17 - 96509753 --------aatgtacagacagggtg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103811 17 - 13098629 --------aatgtacagacagggtg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070071 17 - 4483953 --------aatgtacagacagggtg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700834 17 + 33263144 --------aatgtacagacagggtc i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 918385 17 + 1946073 --------aatgtacagacagggtc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948125 17 - 2117846 --------aatgtagagacagggtc i calJac3.chrUn_GL286373 I 2 C 0 s saiBol1.JH378157 8862941 17 - 16357246 --------aatgtagagacagggtc i saiBol1.JH378157 I 2 C 0 s cebCap1.NW_016107750v1 1346009 17 - 1807191 --------aatgtagagacagggtc i cebCap1.NW_016107750v1 I 310 C 0 s aotNan1.NW_018512383v1 26053 17 + 5963231 --------aatgtagagacagggtc i aotNan1.NW_018512383v1 I 2 C 0 s mm10.chr15 82813769 25 + 104043685 GGGGGGGGGGTGCTgagacagggtt i mm10.chr15 C 0 C 0 e dasNov3.JH570235 59871 33 + 1056298 I e canFam3.chr10 46085972 0 - 69331447 C e otoGar3.GL873526 36289110 2 - 42659167 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5714016 157 + 108171978 I e manLeu1.NW_012102031v1 13974988 35 - 14338769 I a score=982009.000000 s hg38.chr22_GL383582v2_alt 78116 96 + 162811 --tcactgttgcccaggctggtcttgaactc---------------ctgggcttaggc-----gatccttctgcctcagcctcccaaagtgctggcattacaggtatgagccaccatg s panTro5.chr22 28858451 95 + 37823149 --tcactgtt-cccaggctggtcttgaactc---------------ctgggcttaggc-----gatccttctgcctcagcctcccaaagtgctggcattacaggtatgagccaccatg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133087 96 + 50109623 --tcactgttgcccaggctggtcttgaactc---------------ctgggcttaggc-----gatccttctgcctcagcctcccaaagtgctggcattacaggtatgagccaccatg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155354 96 + 4464012 --tcactgttgcccaggctggtcttgaactc---------------ctgggcttaggc-----gatccttctgcctcagcctcccgaagtgctggcattacaggtatgagccaccatg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651476 96 - 115148730 --tcactgttgcccaggctggtcttgaactc---------------ctgggcttaggc-----gatccttctgcctcagcctcccaaagtgctggcattacaggtatgagccaccatg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267139 95 + 92844088 --tcactgttgcccaggctggtcttgaactc---------------ctgagcttaggt-----gatcctcctgcctcagcctcccaaagtgctggcattataggtagaagcc-ccata i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612148 95 - 96509753 --tcactgttgcccaggctggtcttgaactc---------------ctgagcttaggt-----gatcctcctgcctcagcctcccaaagtgctggcattataggtagaagcc-ccata i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103828 95 - 13098629 --tcactgttgcccaggctggtcttgaactc---------------ctgagcttaggt-----gatcctcctgcctcagcctcccaaagtgctggcattataggtagaagcc-ccata i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070088 95 - 4483953 --tcactgttgcccaggctggtcttgaactc---------------ctgagcttaggt-----gatcctcctgcctcagcctcccaaagtgttggcattataggtagaagcc-ccata i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700851 95 + 33263144 --tcactgttgcccaggctggtcttgaactc---------------ctgagcttaggt-----gatcctcctgcctcagcctcccaaagtgttggcattataggTAGACGCC-CCATA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975023 95 - 14338769 --tcactgttgcccaggctggtcttgaactc---------------ctgagcttaggt-----gatcctcctgcctcagcctcccaaagtgttggcattataggtagaagcc-ccata i manLeu1.NW_012102031v1 I 35 C 0 s colAng1.NW_012115588v1 918402 95 + 1946073 --tcactgttgcccaggctggtcttgaactc---------------ctgagcttaggc-----gatcctcctgcctcagcctcccaaagtgttggcattataggtagaagct-ccaca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948142 96 - 2117846 --tcactgttgcccaagctggtcttgaactc---------------ctgggctcaagc-----gatcctcctgccttgacctcccaaaatgctggcattataggtatgagccaccatg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8862958 96 - 16357246 --tcactgttgcccaggctggtcttgaactc---------------ctgggctcaagc-----gatcctcctgccttggcctcccaaaatgctggcattttaggtatgagccaccatg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346026 96 - 1807191 --tcactgttgcccaggctggtcttgaattc---------------ttgggatcaagc-----gatcctcctgccttggcctcccaaaatgctggcactataggtatgagccaccatg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26070 96 + 5963231 --tcactgttgcccaggctggtcttgaactc---------------ctgggctcaagc-----gatcctcctgccttggtctcccaaaatgctggcattataggtatgagccaccatg i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82813794 117 + 104043685 tctctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgtctccc-aagtgctgggattaaaggtgcgcgccaccact i mm10.chr15 C 0 C 0 e dasNov3.JH570235 59871 33 + 1056298 I e canFam3.chr10 46085972 0 - 69331447 C e otoGar3.GL873526 36289110 2 - 42659167 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5714016 157 + 108171978 I a score=120490.000000 s hg38.chr22_GL383582v2_alt 78212 12 + 162811 cccagccTCGAG s panTro5.chr22 28858546 12 + 37823149 cccagccTCGAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133183 12 + 50109623 cccagccTCGAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155450 12 + 4464012 cccagccTCGAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651572 12 - 115148730 cccagccTCGAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267234 12 + 92844088 cccagccTCAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612243 12 - 96509753 cccagccTCAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103923 12 - 13098629 cccagccTCAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070183 12 - 4483953 cccagccTCAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700946 12 + 33263144 CCCAGCCTTAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975118 12 - 14338769 cccagccTCAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918497 12 + 1946073 cccagccTCAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948238 12 - 2117846 cccagccTCGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8863054 12 - 16357246 cccagccTTGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346122 12 - 1807191 cccaaccTCGGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26166 12 + 5963231 cccagccTCAGG i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82813911 11 + 104043685 gcctggctTGC- i mm10.chr15 C 0 C 0 s dasNov3.JH570235 59904 12 + 1056298 CTCAATTTTGAG i dasNov3.JH570235 I 33 C 0 e canFam3.chr10 46085972 0 - 69331447 C e otoGar3.GL873526 36289110 2 - 42659167 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5714016 157 + 108171978 I a score=13923.000000 s hg38.chr22_GL383582v2_alt 78224 1 + 162811 A s panTro5.chr22 28858558 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133195 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155462 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651584 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267246 1 + 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612255 1 - 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103935 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070195 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700958 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975130 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918509 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948250 1 - 2117846 A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8863066 1 - 16357246 A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346134 1 - 1807191 A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26178 1 + 5963231 A i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46085972 1 - 69331447 A i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 59916 1 + 1056298 A i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82813922 0 + 104043685 C e otoGar3.GL873526 36289110 2 - 42659167 I e proCoq1.NW_012136747v1 5077450 719 - 6317780 I e micMur3.chr7 5714016 157 + 108171978 I a score=57330.000000 s hg38.chr22_GL383582v2_alt 78225 3 + 162811 TTT s panTro5.chr22 28858559 3 + 37823149 TTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133196 3 + 50109623 TTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155463 3 + 4464012 TTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651585 3 - 115148730 TTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267247 3 + 92844088 TTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612256 3 - 96509753 TTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103936 3 - 13098629 TTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070196 3 - 4483953 TTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700959 3 + 33263144 TTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975131 3 - 14338769 TTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918510 3 + 1946073 TTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948251 3 - 2117846 TTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8863067 3 - 16357246 TTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346135 3 - 1807191 TTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26179 3 + 5963231 TTT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5714173 3 + 108171978 TTT i micMur3.chr7 I 157 C 0 s proCoq1.NW_012136747v1 5078169 3 - 6317780 TTT i proCoq1.NW_012136747v1 I 719 C 0 s mm10.chr15 82813922 3 + 104043685 TTT i mm10.chr15 C 0 C 0 s canFam3.chr10 46085973 3 - 69331447 TTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 59917 3 + 1056298 TTT i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36289110 2 - 42659167 I a score=1413048.000000 s hg38.chr22_GL383582v2_alt 78228 88 + 162811 -TTAAGAGTAAAATTAAATCAGATGCTAGAGTCTACTAAATCTTT--GAGGATTTTTCTTTCCTTTGTACTTCTGCAAAAAGGAATCCTTC s panTro5.chr22 28858562 88 + 37823149 -TTAAGAGTAAAATTAAATCAGATGCTAGAGTCTACTAAATCTTT--GAGGATTTTTCTTTCCTTTGTACTTCTGCAAAAAGGAATCCTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133199 88 + 50109623 -TTAAGAGTAAAATTAAATCAGATGCTAGAGTCTACTAAATCTTT--GAGGATTTTTCTTTCCTTTGTACTTCTGCAAAAAGGAATCCTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155466 88 + 4464012 -TTAAGAGTAAAATTAAATCAGATGCTAGAGTCTACTAAATCTTT--GAGGATTTTTCTTTCCTTTGTACTTCCGCAAAAAGGAATCCTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651588 87 - 115148730 -TTAAGAGTAAAATTAAATCAGATGCTAGAGTCTACTAAATCTTT--GAGGATTTTT-TTTCCTTTGTGCTTCTGCAAAAAGGAATCCTTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267250 88 + 92844088 -TTAAGAGTAAAATTAAATCAGATACTAAAGTCTACTAAATCTTT--GAGGATTTTTCTTTCCTTTGTACTTCTGCAAAAAGGAATCCTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612259 88 - 96509753 -TTAAGAGTAAAATTAAATCAGATACTAAAGTCTACTAAATCTTT--GAGGATTTTTCTTTCCTTTGTACTTCTGCAAAAAGGAATCCTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7103939 88 - 13098629 -TTAAGAGTAAAATTAAATCAGATACTAAAGTCTACTAAATCTTT--GAGGATTTTTCTTTCCTTTGTACTTCTGCAAAAAGGAATCCTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070199 88 - 4483953 -TTAAGAGTAAAATTAAATCAGATACTAAAGTCTACTAAATCTTT--GAGGATTTTTCTTTCCTTTGTACTTCTGCAAAAAGGAATCCTTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24700962 88 + 33263144 -TTAAGAGTAAAATTAAATCAGATGCTAGAGTCTACTAAATCTTT--GAGGATTTTTCTTTCCTTTGTACTTCTGCAAAAAGGAATCCTTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975134 88 - 14338769 -TTAAGAGTAAAATTAAATCAGATACTAAAGTCTACTAAATCTTT--GAGGATTTTTCTTTCCTTTGTACTTCTGCAAAAAGGAATCCTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918513 88 + 1946073 -TTAAGAGTAAAATTAAATCAGATGCTAGAGTCTACTAAATCTTC--GAGGATTTTTCTTTCCTTTGTACTTCTGCAAAAAGGAATCCTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948254 88 - 2117846 -TTAAGAGTAAAATTAAATCAGATGCTAGAGTCTACTAAATCTTT--GAGAATTTTCCTTTCCTTTGTACTTTCACAAAAAGGAATCCTTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8863070 88 - 16357246 -TTAAGAGTAAAATTAAATCAGATGTTAGAGTCTACTAAATCTTT--GAAAATTTTCCTTTCCTTTGTACTTTCGCAAAAAGGAATCCTTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346138 88 - 1807191 -TTAAGAGTAAAATTAAATCAGATGCTAGAGTCTACTAAATCTTT--GATAATTTTCCTTTCCTTTGTACTTCTGCAAAAAGGAATCCTTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26182 88 + 5963231 -TTAAGAGTAAAATTAAATCAGATGCTAGAGTCTACTAAATCTTT--GAGAATTTTCCTTTCCTTTGTACTTCGGCAAAAAGGAATCCTTC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5714176 90 + 108171978 -TAAAGAGCAAAACTGAATCAGATACTAAAGTCTACTAAATCTTTGAGAGGATTTTCCTTTCCTTTGTACTTCTGTGAAAAGGAATCCTTC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5078172 90 - 6317780 -TCAAGAGTAAAATTAAATCAGATGCTAAAGTCTACTAAATCTTTGAGAGGATTTTCCTTTCCTTTGTACTTCTGTGAAAAGGAATCCTTC i proCoq1.NW_012136747v1 C 0 I 42 s otoGar3.GL873526 36289112 90 - 42659167 -TTGAGAGCAAAATTAAGACAGATGCTGAAGTCTACTAAACCTCTGAGAGGACCTCCCTTCCCTTTGTACTTCTGCAAAAAGTAATCCTTC i otoGar3.GL873526 I 2 C 0 s mm10.chr15 82813925 37 + 104043685 -Taaaaaaaaaaaaaaaa-----------------------------aaaaa------------------------aaaaaagaaTTCTTC i mm10.chr15 C 0 C 0 s canFam3.chr10 46085976 78 - 69331447 -TTAAGAGTAAATTTAAATTGGATGCTAAAGTCCCCTAAATCTTC------------CCCCGCTTTGTACTTCTGTGCAGCGGAGTCCTTC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 59920 88 + 1056298 TTTAAGAGTAAAATGAAATCACATGCTAAAGTCTACTAAATCTTTGAGAGGATTTTCCTT-CCTTTGTAC-TCTGC-AAAAGGAATGCCTC i dasNov3.JH570235 C 0 C 0 a score=19110.000000 s hg38.chr22_GL383582v2_alt 78316 1 + 162811 A s panTro5.chr22 28858650 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133287 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155554 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651675 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267338 1 + 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612347 1 - 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104027 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070287 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701050 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975222 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918601 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948342 1 - 2117846 A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8863158 1 - 16357246 A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346226 1 - 1807191 A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26270 1 + 5963231 A i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5714266 1 + 108171978 A i micMur3.chr7 C 0 C 0 s otoGar3.GL873526 36289202 1 - 42659167 A i otoGar3.GL873526 C 0 I 623 s mm10.chr15 82813962 1 + 104043685 A i mm10.chr15 C 0 C 0 s canFam3.chr10 46086054 1 - 69331447 A i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 60008 1 + 1056298 A i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5078262 42 - 6317780 I a score=417461.000000 s hg38.chr22_GL383582v2_alt 78317 37 + 162811 TAATACTGGAA-----AAAAAAG-ATTTCTAATAACAAAACCC s panTro5.chr22 28858651 37 + 37823149 TAATACTGGAA-----AAAAAAG-ATTTCTAATAACAAAACCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133288 37 + 50109623 TAATACTGGGA-----AAAAAAG-ATTTCTAATAACAAAACCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155555 37 + 4464012 TAATACTGGAA-----AAAAAAG-ATTTCTAATAACAAAACCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651676 37 - 115148730 TAACACTGGAA-----AAAGGAG-ATTTCTAATAACAAAACCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267339 37 + 92844088 AAGTACTGGAA-----AAAAAAG-ATTTCAAATAACAAAACCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612348 37 - 96509753 AAGTACTGGAA-----AAAAAAG-ATTTCAAATAACAAAACCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104028 37 - 13098629 AAGTACTGGAA-----AAAAAAG-ATTTCAAATAACAAAACCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070288 37 - 4483953 AAGTACTGGAA-----AAAAAAG-ATTTCAAATAACAAAACCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701051 37 + 33263144 AAGTACTGGAA-----AAAAAAG-ATTTCGAATAACAAAACCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975223 37 - 14338769 AAGTACTGGAA-----AAAAAAG-ATTTCAAATAACAAAACCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918602 37 + 1946073 AAGTACTAGAA-----AAAAAAG-ATTTCGAATAACAAAACCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948343 36 - 2117846 CAGTACTGGAG-----AAAAAAG-ATTTCAAATAACAAAA-CT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8863159 36 - 16357246 CAGTACTGGAG-----AAAAAAG-ATTTCAAATAACAAAA-CA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346227 37 - 1807191 CAGTACTGGAG----AAAAAAAG-ATTTCAAATAACAAAA-CT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26271 36 + 5963231 TAATACTGGAG-----AAAAAAG-ATTTCAAATAACAAAA-CT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5714267 38 + 108171978 TAGTAGTATGA-----AAAAAAGTACTTCAAATATTAAAACCT i micMur3.chr7 C 0 I 1 s mm10.chr15 82813963 34 + 104043685 CAATACTGGAG--------TGAG-ATTACAAATAATAAAATTT i mm10.chr15 C 0 I 3 s canFam3.chr10 46086055 42 - 69331447 CAGTACTGGGGGTGGGGGGGAAG-ATTTCAAAGACCAAAACTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 60009 39 + 1056298 TAGTACTGGAG---GGAAAAAAG-ATTTCAAATAACAAAACAT i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36289203 623 - 42659167 I e proCoq1.NW_012136747v1 5078262 42 - 6317780 I a score=243598.000000 s hg38.chr22_GL383582v2_alt 78354 18 + 162811 -AAGAGTTCTGTTGTTTTC s panTro5.chr22 28858688 18 + 37823149 -AAGAGTTCTGTTGTTTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133325 18 + 50109623 -AAGAGTTCTGTTGTTTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155592 18 + 4464012 -AAGAGTTCTGTTGTTTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651713 18 - 115148730 -AAGAGTTCTGTTGTTTTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267376 18 + 92844088 -AAGAGTTCTGTTGTTTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612385 18 - 96509753 -AAGAGTTCTGTTGTTTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104065 18 - 13098629 -AAGAGTTCTGTTGTTTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070325 18 - 4483953 -AAGAGTTCTGTTGTTTTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701088 18 + 33263144 -AAGAGTTCTGTTGTTTTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975260 18 - 14338769 -AAGAGTTCTGTTGTTTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918639 18 + 1946073 -AAGAGTTCTGTTGTTTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948379 18 - 2117846 -GACAGTTCTGCTGTTTTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8863195 16 - 16357246 -G--AGTTCTGTTGTTTTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346264 18 - 1807191 -GAGAGTTCTGTTGTTTTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26307 18 + 5963231 -AAGAGTTCTGTTGTTTTC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5714306 18 + 108171978 -AAGAATTTTGTGTTTTTC i micMur3.chr7 I 1 C 0 s proCoq1.NW_012136747v1 5078304 18 - 6317780 -GAGAATTTTGTGTTTTTC i proCoq1.NW_012136747v1 I 42 C 0 s mm10.chr15 82814000 18 + 104043685 -AAATATTCTGTTTGTTTT i mm10.chr15 I 3 I 8 s canFam3.chr10 46086097 18 - 69331447 -GGGAGTTTTCTGTTTTTC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 60048 19 + 1056298 GTAGAATTTCGTGTTTTGT i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36289203 623 - 42659167 I a score=1265761.000000 s hg38.chr22_GL383582v2_alt 78372 97 + 162811 AAAGGAAAACACAC----------CATAAGCTTTACAGAAATGTAGTAAATTAAAAA----------------------------G---------------------------------------AAGAGAC-------CTTTGACTGGAACCCTTTCTGAGAC-GGGGG---AAAGAGCAGGGG s panTro5.chr22 28858706 97 + 37823149 AAAGGAAAACACAC----------CATAAGCTTTACAGAAATGTAGTAAATTAAAAA----------------------------G---------------------------------------AAGAGAC-------CTTTGACTGGAACCCTTTCTGAGAC-GGGGG---AAAGAGCAGGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133343 97 + 50109623 AAAGGAAAACACAC----------CATAAGCTTTACAGAAATGTAGTAAATTAAAAA----------------------------G---------------------------------------AAGAGAC-------CTTTGACTGGAACCCTTTCTGAGAC-GGGGG---AAAGAGCAGGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155610 97 + 4464012 AAAGGAAAACACAC----------CATAAGCTTTACAGAAATGTAGTAAATTAAAAA----------------------------G---------------------------------------AAGAGAC-------CTTTGACTGGAACCCTTTCTGAGAT-GGGGG---AAAGAGCAGGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651731 97 - 115148730 AAAGGAAAACACAC----------CATAAGCTTTACAGAAATGTAGTAAATTAAAAA----------------------------G---------------------------------------AAGAGAC-------CTTTGACTGGAACCCTTCCTGAGAT-GGGGG---AAAGAGCAGGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267394 97 + 92844088 AAAGGAAAACACAC----------CATAAGCTTTACAGTCATGGAGCAAATTAAAGA----------------------------G---------------------------------------AAGAGAC-------CTTTGAGTAGAACCCTTTCTGAGAT-GGGAG---AAAGAGCAGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612403 97 - 96509753 AAAGGAAAACACAC----------CATAAGCTTTACAGTAATGGAGCAAATTAAAGA----------------------------G---------------------------------------AAGAGAC-------CTTTGAGTAGAACCCTTTCTGAGAT-GGGAG---AAAGAGCAGGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104083 97 - 13098629 AAAGGAAAACACAC----------CATAAGCTTTACAGTAATGGAGCAAATTAAAGA----------------------------G---------------------------------------AAGAGAC-------CTTTGAGTAGAACCCTTTCTGAGAT-GGGAG---AAAGAGCAGGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070343 97 - 4483953 AAAGGAAAACACAC----------CATAAGCTTTACAGTAATGGAGCAAATTAAAGA----------------------------G---------------------------------------AAGAGAC-------CTTTGAGTAGAACCCTTTCTGAGAT-GGGAG---AAAGAGCAGGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701106 97 + 33263144 AAAGGAAAACACAC----------CATAAGCTTTACAGTAATGGAGCAAATTAAAGA----------------------------G---------------------------------------AAGAGGC-------CTTTGAGTAGAACCCTTTCTGAGAT-GGGAG---AAAGAGCAGGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975278 97 - 14338769 AAAGGAAAACACAC----------CATAAGCTTTACAGTAATGGAGCAAATTAGAGA----------------------------G---------------------------------------AAGAGAC-------CTTTGAGTAGAACCCTTTCTGAGAT-GGGAG---AAAGAGCAGGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918657 97 + 1946073 AAAGGAAAACACAC----------CATAAGCTTTACAGTAATGGAGCAAATTTAAAA----------------------------G---------------------------------------AGGAGAC-------CTTCGAGTGGAACCCTTTCTGAGAT-GGGAG---AAAGAGCAGGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948397 98 - 2117846 AAAGTAAAACATAC----------CATAAACTTTACAGAAATGCAGTAAATTAAAAA----------------------------G---------------------------------------AAGAGAC-------CTCTGACTGGAACCCTTTCTGAGATGGGGGG---AGAGAGCAGGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8863211 97 - 16357246 AAAGTAAAACATAC----------CATAAACTTTACAGAAATGCAGTAAATTAAAAA----------------------------G---------------------------------------AAGAGAC-------CACTGACTAGAACCCTTTCTCAGGT-GGGGG---AAAGAGCAGGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346282 97 - 1807191 AAAGTAAAACATAC----------CATAAACTTTACAGAAATGCAGTAAATTAAAAA----------------------------G---------------------------------------AAGAGGC-------CTCTAACTGGAACCCTTTCTGAGAT-GGGGG---AAAGAGCAGGGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26325 97 + 5963231 AAAGTAAAACATAC----------CATAAACTTTACAGAAATGCAGTCAATTAAAAA----------------------------G---------------------------------------AAGAGAC-------CTCTGACTGGAACTTTTTTTGAGAT-GGGGG---AAAGAGCAGGGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5714324 95 + 108171978 GAAGGAAATCATAC----------TATAAGCTTCACAGAAATACAGTGAATTAAAAA----------------------------G---------------------------------------AAGAGAC-------CTCTGGCTAAAACCCTCTCTGAGAC-AGGG-----AAGAGCAGGGG i micMur3.chr7 C 0 I 246 s proCoq1.NW_012136747v1 5078322 95 - 6317780 GAAGGAAATCATAC----------TATAAGCTTCACAGAAATATAGTGAATTAAAAA----------------------------G---------------------------------------AAGAGAC-------CTCTGGCAAGAATCCTCTCTGAGAC-AGGG-----AAGAGCAGGGA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36289826 74 - 42659167 aaaggaaaaCATGC----------TGTGAGCTTTATAGAAATATAGTAAATTTAAAA----------------------------G---------------------------------------AGA-----------TTCTTGTTAGAACCCTCTGGGGG----------------------- i otoGar3.GL873526 I 623 C 0 s mm10.chr15 82814026 126 + 104043685 AAAAACAAACGAACAAACATAGTATATAAGCCTTACCAAAAT--------TTAAGGATTTTTGTTTGTTTGTTTGTTTTGTTTTTA---------------------------------------AAGTGAC-------CACTGGTTAGGTTCC--ACTAAGGC-AAGAGTCAAAAGACCAGG-- i mm10.chr15 I 8 C 0 s canFam3.chr10 46086115 98 - 69331447 AAAGGAAAAGCCAC----------TGTAAGCTGTACAGACAGGGAGCAAATGAACAA----------------------------G---------------------------------------GACCGCCT------CCCCGGCTAGAAGCCCTCCGGAGCT-GGGAC---GGAGGGTGGGTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 60067 141 + 1056298 AAAGGGAAACATAC----------CAGAAGCTTTACAGACATGGAGTAAATTAAAAA----------------------------GACTGGAACAGTGTAAAAGCTGAAACTATTCCTAGAACACAAAAAACTTCAAAGCTCTGGCTAGAACCCCTTCCGAGAT-GGG-----AAAGAGTGGGGG i dasNov3.JH570235 C 0 C 0 a score=128376.000000 s hg38.chr22_GL383582v2_alt 78469 9 + 162811 CTACTGGCA s panTro5.chr22 28858803 9 + 37823149 CTACTGGCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133440 9 + 50109623 CTACTGGCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155707 9 + 4464012 CTACTGGCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651828 9 - 115148730 CTACTGGCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267491 9 + 92844088 CTACTGGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612500 9 - 96509753 CTACTGGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104180 9 - 13098629 CTACTGGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070440 9 - 4483953 CTACTGGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701203 9 + 33263144 CTACTGGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975375 9 - 14338769 CTACTGGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918754 9 + 1946073 CTACTGGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948495 9 - 2117846 CAACAGGCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8863308 9 - 16357246 CAACAGGCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346379 9 - 1807191 CAACAGGCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26422 9 + 5963231 CAACAGGCA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5078417 9 - 6317780 CTGCTGGCA i proCoq1.NW_012136747v1 C 0 I 235 s otoGar3.GL873526 36289900 9 - 42659167 CTGCTGGTA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82814152 9 + 104043685 CTCCTGGCA i mm10.chr15 C 0 C 0 s canFam3.chr10 46086213 7 - 69331447 --GCTGTCA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 60208 9 + 1056298 CTACAGGCA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5714419 246 + 108171978 I a score=2665139.000000 s hg38.chr22_GL383582v2_alt 78478 249 + 162811 AGAGATGCCCTGCCCA--AGAAAGA--GACCTAAAAGCCTGTTGTGT----------------CCACTCACAAGGCCACCCCTGGCCAGCTGTGCCCTGAAGGGCTGCCTTCAGGAACAGTCACCCTGCACCCC-ATT-GGCAGT-GGACAGTTTAGAAGC------------------------------------CCCC-ACTCCTTTCCACAGATAATCT-GGGG--AGCTAAGTAACCAATGGAAGAACACTGCATCCACCTGGCGTT---------GTC------A-TCCACAG-GATGAAATGCTGGTGGCAG-----AGCATAGAGC s panTro5.chr22 28858812 249 + 37823149 AGAGATGCCCTGCCCA--AGAAAGA--GACCTAAAAGCCTGTTGTGT----------------CCACTCACAAGGCCACCCCTGGCCAGCTGTGCCCTGAAGGGCTGCCTTCAGGAACAGTCACCCTGCACCCC-ATT-GGCAGT-GGACAGTTTAGAAGC------------------------------------CCCC-ACTCCTTTCCACAGATAATCT-GGGG--AGCTAAGTAACCAATGGAAGAACACTGCATCCACCTGGCGTT---------GTC------A-TCCACAG-GATGAAATGCTGGTGGCAG-----AGCATGGAGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133449 249 + 50109623 AGAGATGCCCTGCCCA--AGAAAGA--GACCTAAAAGCCTGTTGTGT----------------CCACTCACAAGGCCACCCCTGGCCAGCTGTGCCCTGAAGGGCTGCCTTCAGGAACAGTCAGCCTGCACCCC-ATT-GGCAGT-GGACAGTTTAGAAGC------------------------------------CCCC-ACTCCTTTCCACAGATAATCT-GGGG--AGCTAAGTAACCAATGGAAGAACACTGCATCCACCTGGCGTT---------GTC------A-TCCACAG-GATGAAATGCTGGTGGCAG-----AGCATGGAGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155716 249 + 4464012 AGAGATGCCCTGCCCA--AGAAAGA--GACCTAAAAGCCTGCTGTGT----------------CCACTCACAAGGCCACCCCTGGCCAGCTGTGCCCTGAAGGGCTGCCTTCAGGAACAGTCACCCTGCACCCC-ATT-GGCAGT-GGACAGTTTAGAAGC------------------------------------CCCC-ACTCCTTTCCACAGATAATCT-GGGG--AGCTAAGTAACCAATGGAAGAACACTGCATCCACCTGGCGTT---------GTC------A-TCCACAG-GATGAAATGCTGGTGGCAG-----AGCATGGAGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106651837 249 - 115148730 AGAGATGCCCCGCCCA--AGAAAGA--GACCTAAAAGCCTGTTGTGT----------------ACACTCACAAGACCACCCCTGGCCAGCTGTGCCCTGAAGGGCTGCCTTCAGGAACAGTCACCCTGCACCCC-ATC-GGCAGT-AGACAGTTTAGAAGC------------------------------------CCCC-ACTCCTTTCCACAGATATTCT-GGGG--AGCTAAGTAACCAATGGAAGAACACTGCATCCACCTGGGGTC---------GTC------A-TCCACGG-GATGAAATGCTGGCGGCAG-----AGCATGGAGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267500 250 + 92844088 AGAGGTGCCCTGCCCG--AGGAAGA--GACCTAAAGGCCTGTTGTGC----------------CCACTCACAAGGCCACCCCTGGCTAGCTGTGCCCTGAAGGGCTGCCTTCAGGAACAGTCACCCTGCACCCC-ATC-AGCAGT-GGACAGTTTAGAAGG------------------------------------CCCCAACTCTTTTCCACAGATATTCT-AGGG--AGCTAAGTAACCAATGGAAAAACACTGCATCCACCTGGTGGT---------GTC------A-TCCATAG-GATGAAATGCTGGCGGCAG-----AGCATGGAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612509 250 - 96509753 AGAGGTGCCCTGCCCG--AGGAAGA--GACCTAAAAGCCTGTTGTGC----------------CCACTCACAAGGCCACCCCTGGCTAGCTGTGCCCTGAAGGGCTGCCTTCAGGAACAGTCACCCTGCACTCC-ATC-AGCAGT-GGACAGTTTAGAAGG------------------------------------CCCCAACTCTTTTCCACAGATATTCT-AGGG--AGCTAAGTAACCAATGGAAAAACACTGCATCCACCTGGTGGT---------GTC------A-TCCATAG-GATGAAATGCTGGCGGCAG-----AGCATGGAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104189 250 - 13098629 AGAGGTGCCCTGCCCG--AGGAAGA--GACCTAAAAGCCTGTTGTGC----------------CCACTCACAAGGCCACCCCTGGCTAGCTGTGCCCTGAAGGGCTGCCTTCAGGAACAGTCACCCTGCACCCC-ATC-AGCAGT-GGACAGTTTAGAAGG------------------------------------CCCCAACTCTTTTCTACAGATATTCT-AGGG--AGCTAAGTAACCAATGGAAAAACACTGCATCCACCTGGTGGT---------GTC------A-TCCATAG-GATGAAATGCTGGCGGCAG-----AGCATGGAGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070449 250 - 4483953 AGAGGTGCCCTGCCCG--AGGAAGA--GACCTAAAAGCCTGTTGTGT----------------CCACTCACAAGGCCACCCCTGGCTAGCTGTGCCCTGAAGGGCTGCCTTCAGGAACAGTCACCCTGCACCCC-ATC-AGCAGT-GGACAGTTTAGAAGG------------------------------------CCCCAACTCTTTTCCACAGATATTCT-AGGG--AGCTAAGTAACCAATGGAAAAACACTGCATCCACCTGGTGGT---------GTC------A-TCCATAG-GATGAAATGCTGGCGGCAG-----AGCATGGAGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701212 248 + 33263144 AGAGGTGCCCTGCCCG--AGGAAGA--GGCCTAAAAGCCTGCTGTGT----------------CCACTCACAAGGCCACCCCTGGCTAGCTGTGCCCTGAAGGGCTGCCTTCAGGAACAGTCACCCTGCACCCC-ATC-AGCAGT-GGACAGTTTAGAAGG------------------------------------CCCCAACTCTTTTC--CAGATATTCT-GGGG--AGCTAAGTAACCAATGGAAAAACACTGCATCCACCTGGTGGT---------GTC------A-TCCATAG-GATGAAATGCTGGTGGCAG-----AGCATGGAGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975384 250 - 14338769 AGAGGTGCCCTGCCCG--AGGAAGA--GACCTAAAAGCCTGTTGTGT----------------CCACTCACAAGGCCACCCCTGGCTAGCTGTGCCCTGAAGGGCTGCCTTCAGGAACAGTCACCCTGCACCCC-ATC-AGCAGT-GGACAGTTCAGAAGG------------------------------------CCCCAACTCTTTTCCACAGATATTCT-AGGG--AGCTAAGTAACCAATGGAAAAACACTGCATCCACCTGCTGGT---------GTC------A-TCCATAG-GATGAAATGCTGGCGGCAG-----AGCATGGAGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 918763 249 + 1946073 AGAGGTGCCCTGCCAG--AGGAAGA--GACCTAAAAGCCTGTTGTGT----------------CTACTCACAAGGCCACCCCTGGCTAGCTGTGCCCTGAAGGGCTGCCTTCAGGAACAGTCACCCTGCACCCC-ATC-AGCAGT-GGACAGTTTAGAAGG------------------------------------CCCT-ACTCCTTTCCACAGATACTCT-GGGG--AGCTAAGTAACCAATGGAAGAACACTGCATCCACCTGGTGGT---------GTC------A-TCCATAG-GATGAAATGCTGGTGGCAG-----AGCATGGAGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948504 268 - 2117846 AGAGATGCCCTGTCCAGAACAGAGA--GACCTAAAAGCCTGCTGTTTCCTGTCCTCAGGAGCACCACTCACAAGGTCACCCCTGGCCAGCTGTACCCTGAAGGGCTGCCTTCACGAACAGTCACCCTGCGCCCC-ATT-GGTAGT-GGACAGTTTTGAAGC------------------------------------TCCC-ACTACTTTCCACAGATATTCTGGGGG--AACTAAGTAACCAGTGGAAGAACACTGCATCCACCTGGTGTT---------GCC------A-TCCATGG-GACAAAATGCTGGCGGCAC-----AGCCCGGAGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8863317 268 - 16357246 AGAGATGCCCTGTCCGGAAGAAAGA--GACCCAAAAGCCTGCTGTATCCTGTCCTCAGGAGCACCACTCACAAGGCTACCCCTGGCCAGCTGTGCCCTGAAGGGTTGCCTTCAAGAACAGTCACGCTGCACCCC-GTT-GGCAGT-GGACAGTTTTGAAGC------------------------------------CCCC-ACTACTTTCCACAGATATTCTGGGGG--AGCTAAGTAACCAATGGAAGAACACTGCATCCACCTGGTGTT---------GCC------A-TCCATTG-AATGAAATGCTGGCGACAC-----AGCCCGAAGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346388 265 - 1807191 --AGATGCCCTGTCTGGAAGAAAGA--GACCCAAAAGCCTGCTGTATCCTGTCCTCAGGAGCACCACTCACAAGGCCACCCCT-GCCGGCTGTGCCCTGAAAGGCTGTCTTCACGAACAGTCACCCTGCACCCC-ATT-GGCAGT-GGACAGTTTTGAAGC------------------------------------TCCC-ACTACTTTCCACAGATATTCTGGGGG--AGCTAAGTAACCAATGGAAGAACACTGCATCCACCTGGTGTT---------GCC------A-TCCATGG-AACGAAATGCTGGAGGCAC-----ACCCCGAAGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26431 267 + 5963231 AGAGATGCCCTGTCTGGAAGAAAGA--TACCTAAAAGCCTGTTGTATCCTGTCCTCAGGAGCACCACTCACAAGGCCA-CCCTGGCCAGCTGTGCCCTGAAGGGCTGCCTTCACGAACAGTCACCCTGCACCCC-AAG-GGCAGT-GGACAGTTTTGAAGC------------------------------------CCCC-ACTACTTTCCACAGATATTCTCGGGG--AGCTAAGTAACCAATGGAAGAACACTGCATCCACCTGGTGTT---------GCC------A-TCCACGG-GATGAAATGCTGGCGGCAC-----AGCCTGGAGC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36289909 238 - 42659167 -GAAGCACCTCACCTC--AAAAGGGCTGACCTCAATGCCTGTGACAT-CTGCCTTCAGGGGTACAACTCAGGAGGCC-CCATTTGCCAGTTCTGCCCTG-----------------------ACCC----CTCC-ATT-GGCAGT-AGACAGCTTTGAAGA------------------------------------CC---GCCCCCCGCCCCGGATGTTCT-GGGAGCAGCTGAGTAACAAATGGAAAAACACTTTATCCACCTGGTTCT---------GGG------A-ATCGCCGTGACTGCATGCCGGTGGTGC-----AGCCTGGGGC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82814161 244 + 104043685 -GAAGATTCCCACCCA--CAGGGTT--GTCTTAGAAGCT--CTGCCT-------TTAGGACCATCACTCATAGGCTCA---TTTGTCAGCTCTTCACT-AAGGGCTAACTTTAGAAA-AGTTGTCCTGACTCCA-ATT-GGCAGT-GGATAGTT----AGT------------------------------------TCTG-AAGCCTTCTTGCAGACATTC--AGGA--AGCTAAATAACAAAATAAAAAGCTGT-------TCTGTTATT---------GCTTTATTAA-TCCACAT-GACTAAAAGCTGGTGGTGC-----AGCCTAGAGC i mm10.chr15 C 0 I 1 s canFam3.chr10 46086220 214 - 69331447 -----TGGTCTGTCCT-----GGGA--GTCTTCGGGGGCG-----------------------CCGCACACAGGGCC----------------------------TGACTTCA-GCTCAGTCACCGTGAACTCC-AACAGGCAATGGGATGGCCCTAAAAC------------------------------------CTCAAGTACCTCTCCACGGACATTCT-GGGG--AGCTAAGCGACAGTCAGAGACACGTCCGATCCACCTGGTGTC---------GGC------AGTCCATGT-GATTAAAGGCTGGTGGCGCCGCCTGGCCTGGGGC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 60217 306 + 1056298 -GAAGTGTTCCCCCAC--AGCAGGTCTGTCCTAGAAGCCAATCCCACTCTGCCTTCAGGAACACCACAGAAAAGGTCCATACT--CCAGCTCTGCCCT-AAGGGCTGATGCCATGA--AGTCACCCTGCACCCCTGTG-GGCAGA-GGACAGTTTTAAAGGGCAATTTGTCCATAAGCCCGACGAAGACAGGTTAAACCCCATCACCTTTCCACAGATATTCT-AGGG--AGCT-AGTAACAAATGGAAAAACATTTTATCCAACTAGTGTTCAGAATCCAGCC------T-CACATAT-GGTTAAAT-CTGGTGATGC-----AGCCTGGGGT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5078426 235 - 6317780 I e micMur3.chr7 5714419 246 + 108171978 I a score=14275.000000 s hg38.chr22_GL383582v2_alt 78727 1 + 162811 G s panTro5.chr22 28859061 1 + 37823149 G i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133698 1 + 50109623 G i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155965 1 + 4464012 G i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652086 1 - 115148730 G i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267750 1 + 92844088 G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612759 1 - 96509753 G i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104439 1 - 13098629 G i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070699 1 - 4483953 G i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701460 1 + 33263144 G i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975634 1 - 14338769 G i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919012 1 + 1946073 G i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948772 1 - 2117846 A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8863585 1 - 16357246 G i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346653 1 - 1807191 G i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26698 1 + 5963231 G i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5078661 1 - 6317780 G i proCoq1.NW_012136747v1 I 235 C 0 s otoGar3.GL873526 36290147 1 - 42659167 A i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46086434 1 - 69331447 G i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 60523 1 + 1056298 G i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82814405 1 + 104043685 I e micMur3.chr7 5714419 246 + 108171978 I a score=4206849.000000 s hg38.chr22_GL383582v2_alt 78728 228 + 162811 AGCAGGAGGGCAGAGGCAACGACGCCTGCTGGGAGCCGGGC---AGGA--TGCA--GGGAGCCCGGT-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACGGG-CAAAACCAAGAGG-AGAC s panTro5.chr22 28859062 228 + 37823149 AGCAGGAGGGCAGAGGCAACGACGCCTGCTGGGAGCCGGGC---AGGG--TGCG--GGGAGCCCGGT-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACGGG-CAAAACCAAGAGG-AGAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133699 228 + 50109623 AGCAGGAGGGCAGAGGCAACGACACCTGCTGGGAGCCGGGC---AGGG--TGCA--GGGAGCCCGGT-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACGGG-CAAAACCAAGAGG-AGAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3155966 228 + 4464012 AGCAGGAGGGCAGAGGCAACGAGGCCTGTTGGAAGCCGGGC---AGGG--TGCA--GGGAGCCCGGT-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACGGG-CAAAACCAAAAGG-AGAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652087 228 - 115148730 AGCAGGAGGGCAGAGGCAACAAGGCCTGCTGGGAGCCAGGC---AGGG--TGCA--GGGAGCCTGGC-GGCCCCAACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACGGG-CAAAACCAAGAGG-AGAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267751 228 + 92844088 AGCAGGAGGGCAGAGGCAACAAGGCCCGCTGGGAGCCGGGC---AGGG--TACA--GGGAGCCCAGT-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACAGG-CAAAACCAAGAGG-AGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612760 228 - 96509753 AGCAGGAGGGCAGAGGCAACAAGGCCCGCTGGGAGCCGGGC---AGGG--TACA--GGGAGCCCAGT-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACAGG-CAAAACCAAGAGG-AGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104440 228 - 13098629 AGCAGGAGGGCAGAGGCAACAAGGCCCGCTGGGAGCCGGGC---AGGG--TACA--GGGAGCCCAGT-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACAGG-CAAAACCAAGAGG-AGAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070700 229 - 4483953 AGCAGGAGGGCAGAGGCAACAAGGCCCGCTGGGAGCCGGGC---AGGG--TACA--GGGAGCCCAGT-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGTGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACAGG-CAAAACCAAGAGACAGAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701461 228 + 33263144 AGCGGGAGGGCAGAGGCAACAAGGCCTGCTGGGAGCTGGGC---AGGG--TACA--GGGAGCCCAGT-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACAGG-CAAAACCAAGAGG-AGAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975635 228 - 14338769 AGCAGGAGGGCAGAGGCAACAAGGCCCGCTGGGAGCCGGGC---AGGG--TACA--GGGAGCCCAGT-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACAGG-CAAAACCAAGAGG-AGAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919013 228 + 1946073 AGCAGCAGGGCAGAGGCAACAAGGCCTGCTGGGAGCTGGGC---AGGG--TGCA--GGGAGCCCAGT-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACAGG-CAAAACCAAGAGG-AGAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1948773 229 - 2117846 GGCAGGAGGGCAGAGGCAACAAGGCCCGCTGGGAGCTGGGC---AGGG--TGCA--GGGAGCCCAGA-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAATGGGGGGAGAGGGTAATGGAAGGGGAGGCTGACACAGG-CAAAGCCAAGAGG-AGAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8863586 228 - 16357246 GGCAGGAGAGTAGAGGCAACAAGGCCGGCTGGGAGCTGGGC---AGGG--TGCA--GGGAGCCCAGA-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACAGG-CAAAGCCAAGAGG-AGAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346654 228 - 1807191 GGCAGGAGAATAGAGGCAACAAGGCCCGCTGGGAGCTGGGC---AGGG--TGCA--GGGAGCCCAGA-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ATGGAAGGGGAGGCTGACACAGG-CAAAGCCAAGAGG-AGAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26699 228 + 5963231 GGCAGGAGAGCAGAGGCAACAAGGCCTACTGGGAGCTGGGC---AGGG--TGCA--GGGAGCCCAGA-GGCCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTTGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGACACAGG-CAAAGCCAAGAGG-AGAC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5714665 228 + 108171978 AGCAGGAGGGCAGAGGCACCAACACCCGCTGAGAGC-GGGC---AGGT--GACGCTGGGAGCCGGGT-GGCCCCGACTCACCTGTGCTTGCTGTCCTCTCCATTCCCACGAGCACAC-GCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGCCACAGG-CAAAGCCAAAAGG-AGAC i micMur3.chr7 I 246 I 1 s proCoq1.NW_012136747v1 5078662 225 - 6317780 AGCAGGACGGCAGAGGCACCAACACCTGCTGGGAGC-AGGC---AGGT--GACGGTGGGAGCCGGGT-GGCCCTGACTCACCTGTGCTTGCTGTCCTCTCCATTCCCACGAGCACAC-GCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ATGGAAGGGGAGGCTGCC---GG-CAAAGCCAAGAGG-AGAC i proCoq1.NW_012136747v1 C 0 I 26 s otoGar3.GL873526 36290148 227 - 42659167 AGCAGGAGGGCAGAAGCACCAACACCCGCTGGGAGC-GGGC---AGGT--GACGGTGGGAGCCAGGT-GGCCTCGACTCACCTGTGCTTGCTGTCCTCTCCATTCCCACGAGCACAC-GCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTTGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGCCGC-GG-CAAAGCCAAGAGG-AGAC i otoGar3.GL873526 C 0 I 1 s mm10.chr15 82814406 223 + 104043685 ATTAGGAGGCCAGAGGCC---AGATACACACGGAGCTGGGTGAGGAGG--TGGT--GGGAGCTCAGCAGGCCCCAACTCACCTGTGCTTGCTG-----TCCATTCCCACGTGCACACTTCCCCCCTCACCCCCGCTCGGACTGCTCTGTGCTGAGGCTGCCTTTTGCGGTCTTGTTCTGCAAGGGGGGGAGAGGGC-ATGGAAGGGGAGGCTGATGCCGGCCAAAGCCAAGAGA-CA-- i mm10.chr15 I 1 C 0 s canFam3.chr10 46086435 216 - 69331447 AGCAGGAGGGCAGAGGCCGCGATACCCACCGGGACTCTGGC---AG----------GGGTGCC-----GGCCCCGACTCACCTGTGCTTGCTGTACTTTCCATTCCCACGAGCACACTGCCCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCGCTGTCTTGTTCTGCAagggggggaggggga-atgggaggggaggctgacgccgg-caaagccaaggag-at-- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 60524 209 + 1056298 AGGAGGTGGAC--------------------GGAGCAGGGC---GGGAGTGGTG--GGGCGCCTTGG-CACCCCGACTCACCTGTGCTTGCTGTCCTTTCCATTCCCACGCGCACACTG-CCCCCTCACCCCCGCTCCGACTGCTCTGTGCTGAGGCTGCCTTTCACGGTCTTGTTCTGCAGCGGGGGGAGAGGGC-ACGGAAGGGGAGGCTGATGCCAG-TAAAGCCAAGAAG-AGAT i dasNov3.JH570235 C 0 I 1 a score=173302.000000 s hg38.chr22_GL383582v2_alt 78956 10 + 162811 AGACAGGTGG s panTro5.chr22 28859290 10 + 37823149 AGACAGGTGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133927 10 + 50109623 AGACAGGTGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3156194 10 + 4464012 AGACAGGTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652315 10 - 115148730 AGACATGTGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267979 10 + 92844088 AGACAGGTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612988 10 - 96509753 AGACAGGTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104668 10 - 13098629 AGACAGGTGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070929 10 - 4483953 AGACAGGTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701689 10 + 33263144 AGACAGGTGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975863 10 - 14338769 AGACAGGTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919241 10 + 1946073 AGACAGGTGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1949002 10 - 2117846 AGATAGGTGG i calJac3.chrUn_GL286373 C 0 M 936 s saiBol1.JH378157 8863814 10 - 16357246 AGACAGGTGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346882 10 - 1807191 AGACAGGTGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26927 10 + 5963231 AGACAGGTGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5714894 10 + 108171978 AGACAGGAGG i micMur3.chr7 I 1 C 0 s otoGar3.GL873526 36290376 10 - 42659167 AGACAGGAGG i otoGar3.GL873526 I 1 C 0 s mm10.chr15 82814629 10 + 104043685 AGACAAAAGG i mm10.chr15 C 0 I 9 s canFam3.chr10 46086651 10 - 69331447 agacaggagg i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 60734 10 + 1056298 AGACAGGAGG i dasNov3.JH570235 I 1 C 0 e proCoq1.NW_012136747v1 5078887 26 - 6317780 I a score=153197.000000 s hg38.chr22_GL383582v2_alt 78966 14 + 162811 --GAGAGGACAGTGCA-- s panTro5.chr22 28859300 14 + 37823149 --GAGAGGACAGTGCA-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133937 14 + 50109623 --GAGAGGACAGTGCA-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3156204 14 + 4464012 --GAGAGGACAGTGCA-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652325 14 - 115148730 --GAGAGGACAGTGCA-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84267989 14 + 92844088 --GAGAGGACAGTGCG-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87612998 14 - 96509753 --GAGAGGACAGTGCG-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104678 14 - 13098629 --GAGAAGACAGTGCG-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070939 14 - 4483953 --GAGAGGACAGTGCG-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701699 14 + 33263144 --GAGAGGACAGTGTG-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975873 14 - 14338769 --GAGAGGACAGTGCG-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919251 14 + 1946073 --GAGAGGACAGTGCG-- i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8863824 14 - 16357246 --GAGAGGATAGAGTG-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346892 14 - 1807191 --GAGAGGACAGAGCG-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26937 14 + 5963231 --GAGAGGATAGAGCG-- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5714904 14 + 108171978 --GACAGAGGAGAGCA-- i micMur3.chr7 C 0 I 1 s otoGar3.GL873526 36290386 14 - 42659167 --GACAGGAGAGTGTG-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82814648 14 + 104043685 --GGAAATACAGTGTG-- i mm10.chr15 I 9 I 2 s canFam3.chr10 46086664 14 - 69331447 --agaagaacagtgca-- i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 60744 18 + 1056298 GACAGAAGAAAGAGTGAG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5078887 26 - 6317780 I e calJac3.chrUn_GL286373 1949012 936 - 2117846 M a score=941218.000000 s hg38.chr22_GL383582v2_alt 78980 57 + 162811 GAAATCAGGGAGGGCAAA-GG-GAGGACAGGAGTGGCACATGGAAAAGGAAAGAAAAGG s panTro5.chr22 28859314 57 + 37823149 GAAATCAGGGAGGGCAAA-GG-GAGGACAGGAGTGGCACATGGAAAAGGAAAGAAAAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41133951 57 + 50109623 GAAATCAGGGAGGGCAAA-GG-GAGGACAGGAGTGGCACATGGAAAAGGAAAGAAAAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3156218 56 + 4464012 GAAATCAGGGA-GGCAAA-GG-GAGGACAGGAGTGGCACATGGAAAAGGAAAGAAAAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652339 57 - 115148730 GAAATCAGGGAGGGCAAA-GG-GAGGACAGGAGTGGCACACGGAAAAGGAAAGAAAAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268003 57 + 92844088 GAAATCAGGGAGGGCAGA-GG-GAGGACAGGAGTGGCACACGGAAAAGGAAAGAAAAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613012 57 - 96509753 GAAATCAGGGAGGGCAGA-GG-GAGGACAGGAGTGGCACACGGAAAAGGAAAGAAAAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104692 57 - 13098629 GAAATCAGGGAGGGCAGA-GG-GAGGACAGGAGTGGCACACGGAAAAGGAAAGAAAAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4070953 57 - 4483953 GAAATCAGGGAGGGCAGA-GG-GAGGACAGGAGTGGCACACGGAAAAGGAAACAAAAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701713 57 + 33263144 GAAATCAGGGAGGGCAGA-GG-GAGGACAGGAGTGGCACACGGAAAAGGAAAGAAAAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975887 57 - 14338769 GAAATCAGGGAGGGCAGA-GG-GAGGACAGGAGTGGCACACGGAAAAGGAAAGAAAAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919265 57 + 1946073 GAAATCAGGGAGGGCAGA-GG-GAGGACAGGAGTGGCACACGGAAAAGGAAAGAAAAGG i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8863838 57 - 16357246 GAGATCAGGGAGGGCGGA-GG-GAGGACAGGAGTGGCACACAGAAAAGGAAAGAAAAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346906 57 - 1807191 GAAATCAGGGAGGGCGGA-GG-GAGGACAGGAGCGGCACACAGAAAAGGAAAGAAAAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 26951 57 + 5963231 GAAATCAGGGAGGGCAGA-GG-GAGGACAGGCGTGGCACAGAGAAAAGGAAAGAAAAGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5714919 55 + 108171978 GGAATCAGGGAGGGCAGA-GG---GGACAGGAGCAGCACATGGAAAAGGAAAGAAAAGG i micMur3.chr7 I 1 C 0 s proCoq1.NW_012136747v1 5078913 55 - 6317780 GGAACCAGGGAGGGCAGA-GG---GGACAGGAGCAGCACATGGAAAAGGAAAGAAAAGG i proCoq1.NW_012136747v1 I 26 C 0 s otoGar3.GL873526 36290400 53 - 42659167 --GATCAGGAAGGGCAGA-GG---GGACAGGAGTGGCACACGGAAAAGGAAAGAAAAGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82814664 58 + 104043685 GGAACCAGGAAGGGTAGACGA-AAGGACAGGAATGGCACATGGAAAAGGAAATAAAAAG i mm10.chr15 I 2 C 0 s canFam3.chr10 46086678 58 - 69331447 ggggtcagggagggcaga-ggcgaggagaggaacggcacatggaaaaggaaagaaaaag i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 60762 58 + 1056298 GGAATCAGGGAGGGCAGA-GGTGAGGAGAGGAACGGCACACAGAAAATGAAAGAAAATG i dasNov3.JH570235 C 0 C 0 e calJac3.chrUn_GL286373 1949012 936 - 2117846 M a score=1109952.000000 s hg38.chr22_GL383582v2_alt 79037 61 + 162811 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT s panTro5.chr22 28859371 61 + 37823149 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41134008 61 + 50109623 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3156274 61 + 4464012 CAGAGTCAGTCCTGACCGACAAACAGGAGACATACAGACAGGGTTTTCTGAGGC-AAAATGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652396 61 - 115148730 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268060 61 + 92844088 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613069 61 - 96509753 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104749 61 - 13098629 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071010 60 - 4483953 CAGAGTCAGTCCTGACCGAC-AACAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701770 61 + 33263144 CAGAGTCAGTCCTGACCGACAAATAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13975944 61 - 14338769 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919322 61 + 1946073 CAGAGTCAGTCCTGACCGACAAACAGGAAACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1949948 60 - 2117846 CAGAGTCAGTCCTGA-TGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i calJac3.chrUn_GL286373 M 936 C 0 s saiBol1.JH378157 8863895 60 - 16357246 CAGAGTCAGTCTTGA-TGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1346963 60 - 1807191 CAGAGTCAGTCCTGA-TGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27008 60 + 5963231 CAGAGTCAGTCCTGA-TGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGC-AAAATGT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5714974 61 + 108171978 CAGAGTCAGTACTGACCGACAAACCGGAGACATTCAGACAAGGCTCTCTCAGGC-AAAATGT i micMur3.chr7 C 0 I 121 s proCoq1.NW_012136747v1 5078968 58 - 6317780 CAGAGTCAGTACTGACTGATAAACC---GACATTCAGACAAGGCTCTCTGAGGC-AAAATGT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36290453 62 - 42659167 CAGAGTCAGTACTGACCGACCAATGGGAGACACTCAGACAGGGCTCTCTGAGGCAAAAATGT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82814722 61 + 104043685 CAGAGTCAGTACTGAATGACAAACAGGAGGCACCCAGACTGGGCTTGCTGAGGT-AAAACAT i mm10.chr15 C 0 C 0 s canFam3.chr10 46086736 60 - 69331447 -agagTCAGTATTGAATGACAAACAGGAGATATTCAGACAGGGCTTTCTGAGGC-AAAATGT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 60820 61 + 1056298 AAGAGTCAGTATTGAATGACAAACAGGAGAAATTCAGACTGGATTTTCTGAGGC-AAAATGT i dasNov3.JH570235 C 0 C 0 a score=795697.000000 s hg38.chr22_GL383582v2_alt 79098 60 + 162811 GACCCTTAAAA-AGGGGAGTTCTAAA----AATAACA---TGCAAATTAAGTAAAAATAAAGAGAATA--- s panTro5.chr22 28859432 60 + 37823149 GACCCTTAAAA-AGGGGAGTTCTAAA----AATAACA---TGCAAATTAAGTAAAAATAAAGAGAATA--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41134069 60 + 50109623 GACCCTTAAAA-AGGGGAGTTCTAAA----AATAACA---TGCAAATTAAGTAAAAATAAAGAGAATA--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3156335 60 + 4464012 GACCCTTAAAA-AGGGGAGTTCTAAA----AATAACA---TGCAAATTAAGTAAAAATAAAGAGAATA--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652457 60 - 115148730 GACCCTTAAAA-AGGGGAGTTCTAAA----AATAACA---TGCAAATTAAGTAAAAATAAAGAGAATA--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268121 60 + 92844088 GACCCTTAAAA-AGGGGAGTTCTAAA----AATAACA---TGCAAATTAAGTAAAAATAAAGAGAATA--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613130 60 - 96509753 GACCCTTAAAA-AGGGGAGTTCTAAA----AATAACA---TGCAAATTAAGTAAAAATAAAGAGAATA--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104810 60 - 13098629 GACCCTTAAAA-AGGGGAGTTCTAAA----AATAACA---TGCAAATTAAGTAAAAATAAAGAGAATA--- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071070 60 - 4483953 GACCCTTAAAA-AGGGGAGTTCTAAA----AATAACA---TGCAAATTAAGTAAAAATAAAGAGAATA--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701831 60 + 33263144 GACCCTTAAAA-AGGGGAGTTCTAAA----AATAACA---TGCAAATTAAGTAAAAATAAAGAGAATA--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13976005 60 - 14338769 GACCCTTAAAA-AGGGGAGTTCTAAA----AATAACA---TGCAAATTAAGTAAAAATAAAGAGAATA--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919383 60 + 1946073 AACCCTTAAAA-AGGGGAGTTCTAAA----AATAACA---TGCAAATTAAGTAAAAATAAAGAGAATA--- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1950008 60 - 2117846 GACCCTTAAAA-AGGAGAGTTCTAAA----AATAACA---TGCAAATTAAATAAAAATAAAGAGAATA--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8863955 60 - 16357246 GACCCTTAAAA-AGGAGAGTTCTAAA----AATAACA---TGCAAATTAAATAAAAATAAAGTGAATA--- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1347023 60 - 1807191 GACCCTTAAAA-AGGAGAGTTCtaaa----aataaca---tgcaaattaaataaaaataaagagaata--- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27068 57 + 5963231 GACCCTT-AAA-AGGAGAGTTCtaaa----aataaca---tgcaaattaaataaaaataaa--gaata--- i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5079026 61 - 6317780 GGCCATTAAAACAGGGGAGCTCTAGA----AGTAACA---GTTAAATTCAGTGAAAATGAAGAGAATA--- i proCoq1.NW_012136747v1 C 0 I 55 s otoGar3.GL873526 36290515 57 - 42659167 GGCCAATAAAACAAGGGAGCTCTAGA----AGTAAC-------GAGTTAAGTGAAAATAAAGAGAATA--- i otoGar3.GL873526 C 0 I 3 s mm10.chr15 82814783 26 + 104043685 -------------------------G----ATTA-------------TAAGTAAAAATAAAGAGAATA--- i mm10.chr15 C 0 I 3 s canFam3.chr10 46086796 59 - 69331447 GACCATTAAAA-AAGAGAAGTTTAAAAAATAAAAACA---TGTAAATTAACTAA-----AAGAGAATA--- i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 60881 57 + 1056298 GACCCTTAAAAAAGGGAAGTTTTAAA----AATAAAAACTTGTAAATTAAGTA----------GAATACTG i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5715035 121 + 108171978 I a score=618574.000000 s hg38.chr22_GL383582v2_alt 79158 66 + 162811 TAAGATCCTGTGACC---ACTCCCCGCCCTTCCCCAGAAATAATTTTTAAAGAA-AAGCATAAGCAAGCA s panTro5.chr22 28859492 66 + 37823149 TAAGCTCCTGTGACC---ACTCCCTGCCCTTCCCCAGAAATAATTTTTAAAGAA-AAGCATAAGCAAGCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41134129 66 + 50109623 TAAGCTCCTGTGACC---ACTCCCTGCCCTTCCCCAGAAATAATTTTTAAAGAA-AAGCATAAGCAAGCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3156395 66 + 4464012 TAAGATCCTGTGACC---AGCCCCCGCCCTTCCCCGGAAATAATTTTTAAAGAA-AAGCATAAGCAAGCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652517 69 - 115148730 TAAGATCCTGTGACCCCTACCCCCCACCCTTCCCTGGAAATAATTTTTAAAGAA-AAGCATAAGCAAGCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268181 59 + 92844088 TAAGATCCTGTGACC---ACCCC-------TCCCTGGAAATAATTTTTAAAGAA-GAGCATAAGCAAGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613190 59 - 96509753 TAAGATCCTGTGACC---ACCCC-------TCCCTGGAAATAATTTTTAAAGAA-GAGCATAAGCAAGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104870 59 - 13098629 TAAGATCCTGTGACC---ACCCC-------TCCCTGGAAATAATTTTTAAAGAA-GAGCATAAGCAAGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071130 59 - 4483953 TAAGATCCTGTGACC---ACCCC-------TCCCTGGAAATAATTTTTAAAGAA-AAGCATAAGCAAGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701891 59 + 33263144 TAAGATCCTGTGACC---ACCCC-------TCCCTGGAAATAATTTTTAAAGAA-AAGCATAAGCAAGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13976065 59 - 14338769 TAAGATCCTGTGACC---ACCCC-------TCCCTGGAAATAATTTTTAAAGAA-AAGCATAAGCAAGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919443 59 + 1946073 TAAGATCCTATGACC---ACCCC-------TCCCTGGAAATAATTTTTAAAGAA-AAGCATAAGCAAGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1950068 59 - 2117846 TAAAATCCTGTGACG---GCCCC-------TCCCCAGAAATAATTATTTTAAAA-AAGCATAAGCAAGCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8864015 57 - 16357246 TAAAATCCTGTGACG---GCCCC-------T-CCCAGAAA-AATTGTTTTAAAA-AAGCATAAGCAAGCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1347083 59 - 1807191 taaaaTCCTGTGATG---GACCC-------TCCCATGAAATAATTATTTTAAAA-AAGCATAAGCAAGCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27125 59 + 5963231 taaaatCCTATGACA---GCCCC-------TCCCCAGAAATAATTGCTTTAAAA-AAGCATAAGCAAGCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36290575 52 - 42659167 TAATATCCTATGATC---CACTT-------T---AGGAAATAATTTTTAAAGAG-AAGCATAAGAG---- i otoGar3.GL873526 I 3 C 0 s mm10.chr15 82814812 49 + 104043685 TCTGATCCTAAGACC------CA-------TCTCTGAGAATTATTCTTAAAAGC-AAGCATAA------- i mm10.chr15 I 3 C 0 s canFam3.chr10 46086858 56 - 69331447 TAAGATCCTGTGGTC------CA-------TCTCTGAAAATAATTTCCAAAGAA-AAGCATAAGCAAACA i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 60938 53 + 1056298 TAAGATCCTATGGTC---TACCT----------CTGGAAATAATGTTTAAAGAATAGGCAAAAGCA---- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5079087 55 - 6317780 I e micMur3.chr7 5715035 121 + 108171978 I a score=599353.000000 s hg38.chr22_GL383582v2_alt 79224 33 + 162811 TCTTTCAGGAGCATTTTGAGGGCAGACCTCTCT s panTro5.chr22 28859558 33 + 37823149 TCTTTCAGGAGCATTTTGAGGGCAGACCTCTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41134195 33 + 50109623 TCTTTCAGGAGCATTTTGAGGGCAGACCTCTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3156461 33 + 4464012 TCTTTCAGGAGCATTTTGAGGGCAGACCTCTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652586 33 - 115148730 TCTTTCAGGAGCATTTTGAGGGCAGACCTCTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268240 33 + 92844088 TCTTTCAGGAGCATTTTGAGGGCAGACCTCTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613249 33 - 96509753 TCTTTCAGGAGCATTTTGAGGGCAGACCTCTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104929 33 - 13098629 TCTTTCAGGAGCATTTTGAGGGCAGACCTCTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071189 33 - 4483953 TCTTTCAGGAGCATTTTGAGGGCAGACCTCTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701950 33 + 33263144 TCTTTCAGGAGCATTTTGAGGGCAGACCTCTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13976124 33 - 14338769 TCTTTCAGGAGCATTTTGAGGGCAGACCTCTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919502 33 + 1946073 TCTTTCAGGAGCATTTTGAGGGCAGACCTCTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1950127 33 - 2117846 TCCTTCAGGAGCATTTTGAGGACAGACCTCTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8864072 33 - 16357246 TCCTTCAGGAGCATTTTGAGGACAGACCTCTCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1347142 33 - 1807191 TCCTTCAGGAACATTTTGAGGACAGACCTCTCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27184 33 + 5963231 TCCTTCAGGAGCATTTTGAGGACAGGCCTCTCT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5715156 33 + 108171978 TCTTTCAGGAGCGTTTTGAGAGCAGACCTCTCT i micMur3.chr7 I 121 I 52 s proCoq1.NW_012136747v1 5079142 33 - 6317780 TCTTTCAGGAGCGTTTTGAGAGCAGACCTCTCT i proCoq1.NW_012136747v1 I 55 C 0 s otoGar3.GL873526 36290627 33 - 42659167 TCCTTTAAGAGCATTTTGAAGGCAGACCCCTCT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82814861 33 + 104043685 TCTGTCAGGAACATTCTGAGGACAGTCCTCTAA i mm10.chr15 C 0 C 0 s canFam3.chr10 46086914 33 - 69331447 TCTCTCCAAAGTGCTGTGAGGGCAGACCTGTCG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 60991 33 + 1056298 TCTTTCAGAAGCCATGTGAGGGCAGACCTCCAG i dasNov3.JH570235 C 0 C 0 a score=50483.000000 s hg38.chr22_GL383582v2_alt 79257 3 + 162811 GGA s panTro5.chr22 28859591 3 + 37823149 GGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41134228 3 + 50109623 GGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3156494 3 + 4464012 GGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652619 3 - 115148730 GGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268273 3 + 92844088 GGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613282 3 - 96509753 GGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104962 3 - 13098629 GGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071222 3 - 4483953 GGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701983 3 + 33263144 GGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13976157 3 - 14338769 GGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919535 3 + 1946073 GGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1950160 3 - 2117846 GGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8864105 3 - 16357246 GGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1347175 3 - 1807191 GGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27217 3 + 5963231 GGA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36290660 3 - 42659167 GGA i otoGar3.GL873526 C 0 I 4 s mm10.chr15 82814894 3 + 104043685 AGA i mm10.chr15 C 0 C 0 s canFam3.chr10 46086947 3 - 69331447 GGA i canFam3.chr10 C 0 I 31 s dasNov3.JH570235 61024 3 + 1056298 GGG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5079175 0 - 6317780 C e micMur3.chr7 5715189 52 + 108171978 I a score=368744.000000 s hg38.chr22_GL383582v2_alt 79260 30 + 162811 ---CAACC---TCCTTCTAGTACTTTC-GGC-CCTACT s panTro5.chr22 28859594 30 + 37823149 ---CAACC---TCCTTCTAGTACTTTC-GGC-CCTACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41134231 30 + 50109623 ---CAACC---TCCTTCTAGTACTTTC-GGC-CCTACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3156497 30 + 4464012 ---CAACC---TCCTTCTAGGACTTTC-GGC-CCTACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652622 30 - 115148730 ---CAACC---TCCTTCTAGTACTTTC-GGC-CCTACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268276 30 + 92844088 ---CAACC---TCCTCCTAGTACTTTC-GGC-CCTACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613285 30 - 96509753 ---CAACC---TCCTCCTAGTACTTTC-GGC-CCTACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104965 30 - 13098629 ---CAACC---TCCTCCTAGTACTTTC-GGC-CCTACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071225 30 - 4483953 ---CAACC---TCCTCCTAGTACTTTC-GGC-CCTACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24701986 30 + 33263144 ---CAACC---TCCTCCTAGTACTTTC-AGC-CCTACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13976160 30 - 14338769 ---CAACC---TCCTCCTAGTACTTTC-GGC-CCTACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919538 30 + 1946073 ---CAACC---TCCTCCTAGTTCTTTC-GGC-CCTACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1950163 30 - 2117846 ---CAACC---TCCTCCTAGTACTTTG-GGC-CCTACC i calJac3.chrUn_GL286373 C 0 I 6 s saiBol1.JH378157 8864108 30 - 16357246 ---CAACC---TCCTCCTAGTACTTTG-GGC-CCTACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1347178 30 - 1807191 ---CAACC---TCCTCCTAGTACTTTG-GGC-CCTACT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27220 30 + 5963231 ---TAACC---TCCTCCTCATCCTTTG-GGC-CCTACT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5079175 31 - 6317780 ---CAACC---TCTGTGTAGTCCTTTCTGGT-CCTACT i proCoq1.NW_012136747v1 C 0 I 3 s otoGar3.GL873526 36290667 32 - 42659167 ---CAACC---TCTTTCTAGTCCTTTCTGTCACTTCCT i otoGar3.GL873526 I 4 I 3 s mm10.chr15 82814897 29 + 104043685 ---TGACT---CCTT--TAGTATTTTCCAGC-CCTTCT i mm10.chr15 C 0 C 0 s dasNov3.JH570235 61027 36 + 1056298 TGACACCCGTGTGTTTTCAGCACTTCT-GGC-CCTACT i dasNov3.JH570235 C 0 I 3 e canFam3.chr10 46086950 31 - 69331447 I e micMur3.chr7 5715189 52 + 108171978 I a score=242804.000000 s hg38.chr22_GL383582v2_alt 79290 20 + 162811 AGATTTAAGACTGCGAGTGA s panTro5.chr22 28859624 20 + 37823149 AGATTTAAGACTGTGAGTGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41134261 20 + 50109623 AGATTTAAGACTGTGAGTGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3156527 20 + 4464012 AGATTTAAGACTGCGAGTGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652652 20 - 115148730 AGATTTAAGACTGCGAGTGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268306 20 + 92844088 AGATTTAAGACTGTGAGTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613315 20 - 96509753 AGATTTAAGACTGTGAGTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7104995 20 - 13098629 AGATTTAAGACTGTGAGTGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071255 20 - 4483953 AGATTTAAGACTGTGAGTGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24702016 20 + 33263144 AGATTTAAGACTGTGAGTGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13976190 20 - 14338769 AGATTTAAGACTGTGAGTGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919568 20 + 1946073 AGATTTAAGACTGTGAGTGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1950199 20 - 2117846 AGATTTAAGACTGCGTGTGA i calJac3.chrUn_GL286373 I 6 C 0 s saiBol1.JH378157 8864138 20 - 16357246 AGATTTAAGACTGTGTGTGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1347208 20 - 1807191 AGATTTAAGACTGCGTGTGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27250 20 + 5963231 AGATTTAAGACTGTGTGTGA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5079209 20 - 6317780 AGACTAAAGACTATGAGCGG i proCoq1.NW_012136747v1 I 3 C 0 s otoGar3.GL873526 36290702 20 - 42659167 AGGCTGAAGACTGTGAGCAG i otoGar3.GL873526 I 3 C 0 s mm10.chr15 82814926 12 + 104043685 GG-----AGACTGAGCG--- i mm10.chr15 C 0 C 0 s canFam3.chr10 46086981 19 - 69331447 agcccggagcccgtgagcG- i canFam3.chr10 I 31 C 0 s dasNov3.JH570235 61066 20 + 1056298 AAGTTTTGAAGTGTGACTGG i dasNov3.JH570235 I 3 C 0 e micMur3.chr7 5715189 52 + 108171978 I a score=765172.000000 s hg38.chr22_GL383582v2_alt 79310 39 + 162811 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- s panTro5.chr22 28859644 39 + 37823149 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41134281 39 + 50109623 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3156547 39 + 4464012 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652672 39 - 115148730 CCAGTGACCACCAGGTGTCAGTGTGACCCCAGTGAGAGA- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268326 39 + 92844088 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613335 39 - 96509753 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7105015 39 - 13098629 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071275 39 - 4483953 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24702036 39 + 33263144 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13976210 39 - 14338769 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919588 39 + 1946073 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1950219 39 - 2117846 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8864158 39 - 16357246 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1347228 39 - 1807191 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27270 39 + 5963231 CCAGTGACCGCCAGGTGTCAGTGTGACCTCAGCCAGAGA- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5715241 39 + 108171978 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCCAGAGA- i micMur3.chr7 I 52 I 499 s proCoq1.NW_012136747v1 5079229 38 - 6317780 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGTCAGAG-- i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36290722 35 - 42659167 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCTG----- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82814938 37 + 104043685 CCAATGACCACCAGGTGTCAGTGTGACCTCAGCTACA--- i mm10.chr15 C 0 C 0 s canFam3.chr10 46087000 37 - 69331447 -TGGTGACCACCAGGTGTCAGTGTGACCCCAGCCAGAG-- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 61086 40 + 1056298 CCAGTGACCACCAGGTGTCAGTGTGACCTCAGCTAGAGGA i dasNov3.JH570235 C 0 C 0 a score=922274.000000 s hg38.chr22_GL383582v2_alt 79349 73 + 162811 CACAGTGCAGCCCC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTCTG---ATCCTTTCTTGGGGCTCCTTCTC s panTro5.chr22 28859683 73 + 37823149 CACAGTACAGCCCC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTCTG---ATCCTTTCTTGGGGCTCCTTCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41134320 73 + 50109623 CACAGTGCAGCCCC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTCTG---ATCCTTTCTTGGGGCTCCTTCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3156586 73 + 4464012 CACAGTGCAGCCCC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTCTG---ATCCTTTCTTGGGGCTCCTTCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652711 73 - 115148730 CACGGTGCAGCCCC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTCTG---ATCCTTTCTTGGGGCTCCTTCTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268365 73 + 92844088 CACGGTGCAGCCCC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTCTG---GTCCTTTCTTGGGGCTCCTTCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613374 73 - 96509753 CACGGTGCAGCCCC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTCTG---GTCCTTTCTTGGGCCTCCTTCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7105054 73 - 13098629 CACGGTGCAGCCCC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTCTG---GTCCTTTCTTGGGGCTCCTTCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071314 73 - 4483953 CACGGTGCAGCCCC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTCTG---GTCCTTTCTTGGGGCTCCTTCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24702075 73 + 33263144 CACAGTGCAGCCCC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTCTG---GTCCTTTCTTGGGGCTCCTTCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13976249 73 - 14338769 CACGGTGTAGCCCC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTCTG---GTCCTTTCTTGGGGCTCCTTCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919627 73 + 1946073 CACGGTGCAGCCCC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTCTG---ATCCTTTCTTGGGGCTCCTTCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1950258 73 - 2117846 CACAGTGCAGCCTC---TGCAGGAAA-------C-ATCA-GGTGGCAATGGT-CT--CCGTTTTG---ATCCTTTCTTGGGGCTCCCTCGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8864197 73 - 16357246 CACAGTGCAGCCTC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTTTG---ATCCTTTCTTGGGGCTCCCTCTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1347267 73 - 1807191 CATAGTGCAGCCTC---TGCAGGAAA-------C-ATCA-GGTGGCGGTGGT-TT--CCGTTTTG---ATCCTTTCTTGGGGCTCCCTCTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27309 73 + 5963231 CACAGTGCAGCCTC---TGCAGGAAA-------C-ATCA-GGTGGCAGTGGT-CT--CCGTTTTG---ATCCTTTCTTGGGGCTCCCTCTC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5079267 67 - 6317780 ---AGTGTGGCCAC---GGCAGGAAA-------C----A-GGTGGCAGCTGT-CT--CCATTCTG---GTCCTTTCTTGGGGGCCCTTCTC i proCoq1.NW_012136747v1 C 0 I 426 s otoGar3.GL873526 36290757 60 - 42659167 ---AGAGTGGCCAC---TACAGGAAA-------C-CAGA-GGGAACAGCT-------------CA---ATCCTTTCTTGGGGCCCCTTCCC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82814975 66 + 104043685 -------CAGATCCAAGTACAGGAAAACAGGGGC-AGCAGGGCAGCAGAAGT-TT--CCACCTTT---GCCCTC--------CTCCTT--- i mm10.chr15 C 0 C 0 s canFam3.chr10 46087037 75 - 69331447 --CAGCGCGGCTGC---CG-AGGGGA-------C-TCCA-GGTGGCGCCAGA-CCAGCCGGGTGGCGCGTCCTCACCGGGGCTTCCTTCCC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 61126 75 + 1056298 GATGATGCAGCCAC---CGACTAAAA-------CTTTCA-GGTGGCAACTCTACC--CCATTCCA---ATCCTTTCCTGGAGCTCTTTTTC i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5715280 499 + 108171978 I a score=4505147.000000 s hg38.chr22_GL383582v2_alt 79422 432 + 162811 CAT--ATACACCCTCCCCA--CACACATATGTGGTATC-CACAAACAGACCATTCA-CCCCTTACCTCCCACCCTTTC-TAAAGGAAGCGACCACGAGACCACCTCCTAAATAAACTGGGAAGTGGAGCCCGAGACAGCCCA-TCCACTGT-G---CATC---AGGCTGCTTCTGCAGAAGCACAACCTGGAAGAGACTG--AGCTTCCCCAGAGCCTTGTGGTCAGCTCGA------CTTCTAGTCTGGGAAGATGCCTTTGCACAGGCCTC-AAGGCCTAGAACCAG---ACTTACCAAACGC-CAACCTGTGAATTGGGGTTCTATT-CACCTCAAGTGGAAATCAGT-GGCTTGATCGAGTTAGATATTCTCACCTCTCTTAATGAACAGACAAACACC--CCC-TC-----------TCCCAAAACACATTTCTCCTGGGATCCTCA---TAATACTCCGAGTGCTGGCCCCCA s panTro5.chr22 28859756 435 + 37823149 CAT--ATACACCCTCCCCA--CACACATATGTGGTATC-CACAAACAGACCATTCA-CCCCTTACCTCCCACCCTTTCCTAAAGGAAGTGACCACGAGACCACCTCCTAAATAAACTGGGAAGTGGAGCCCGAGACAGCCCA-TCCACTGT-G---CATC---AGGCTGCTTCTGCAGAAGCACAACCTGGAAGAGACTGTGAGCTTCCCCAGAGCCTTGCGGTCAGCTCGA------CTTCTAGTCTGGGAAGATGCCTTTGCACAGGCCTC-AAGGCCTAGAACCAG---ACTTACCAAACGC-CAACCTGTGAACTGGGGTTCTATT-CACCTCAAGTGGAAATCAGT-GGCTTGATCGAGTTAGATATTCTCACCTCTCTTAATGAACAGACAAACACC--CCC-TC-----------TCCCAAAACACATGTCTCCTGGGATCCTCA---TAATACTCCGAGTGCTGGCCCCCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41134393 435 + 50109623 CAT--ATACACCCTCCCCA--CACACATATGTGGTATC-CACAAACAGACCATTCA-CCCCTTACCTCCCACCCTTTCCTAAAGGAAGTGACCACGAGACCACCTCCTAAATAAACTGGGAAGTGGAGCCCGAGACAGCCCA-TCCACTGT-G---CATC---AGGCTGCTTCTGCAGAAGCACAACCTGGAAGAGACTGTGAGCTTCCCCAGAGCCTTGCGGTCAGCTCGA------CTTCTAGTCTGGGAAGATGCCTTTGCACAGGCCTC-AAGGCCTAGAACCAG---ACTTACCAAACGC-CAACCTGTGAACTGGGGTTCTATT-CACCTCAAGTGGAAATCAGT-GGCTTGATCGAGTTAGATATTCTCACCTCTCTTAATGAACAGACAAACACC--CCC-TC-----------TCCCAAAACACATGTCTCCTGGGATCCTCA---TAATACTCCGAGTGCTGGCCCCCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3156659 434 + 4464012 CAT--ATACACCCTCCCCA--CACACATATGTGGTATC-CACAAACAGACCATTCA-CCCCTTACCTCCCACCCTTTCCTAAAGGAAGCGACCGCGAGACCACCTCCTAAATAAACTGGGAAGTGGAGCCCAAGGCAGCCCA-TCCACTGT-G---CATT---AGGCTGCTTCTGCAGAAGCACAACCTGGAAGAGACTGTGAGCTTCCCCAGAGCCTTGCGGTCAGCTCGA------CTTCTAGTCTGGGAAGATGCCTTTGCACAGGCCTC-AAGGCCTAGAACCAG---ACTTACCAAACGC-CAACCTGTGAACTGGGGTTCTATT-CACCTCAAGTGGAAATCAGT-GGCTTGATCGAGTTAGATATTCTCACCTCTCTTAATGAACAGACAAACACC--CCC--C-----------TCCCAAAACACATTTCTCCTGGGATCCTCA---TAATACTCCAAGTGCTGGCCCCCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106652784 436 - 115148730 CAC--ATACACCCTCCCCA--CACACATATGTGGTATC-CACAAACAGGCCATTCA-CCCCTTACCTCCCACCCTTTCCTAAAGGAAGCGACCATGAGACCACCTCCTAAATAAGCTGGGAAGTGGAGCCCGAGGCAGCCCA-TCCACTGT-G---CATC---AGGCTGCTTCTGCAGAAGCATAACCTGGAAGAGACTGTGAGCTTCCCCAGAGCCTTGGGGTCAGCTCGA------CTTCTAGTCTAGGAAGATGCCTTTGCACAGGCCTC-AAGGCCTAGAACCAG---ACTTACCAAACGC-CAACCTGTGAACTGGGGTTCTATT-CATCTCAAGTGGAAATCAGT-GGCTTGATCGAGTTAGATATTCTCACCTCTCTTAATAAACAGACAAACACT--CCCTTA-----------TCCCAAAACACATTTCTCCTGGGATCCTCA---TAACACTCCGAGTGCTGGTCCCCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268438 433 + 92844088 CGT--ATACACCCTCCCCA--TACACATATGTGGTATC-CACAAACAGGCCATTCA-CCCCTCACCTCCCACCCTTTCCTAAAGGAAGCGACCACGAGACCACCTCCTAAATAAACTGGGAAGTGGAG-CCGAGGCAGCCCA-TCCACTGC-G---CATC---AGGCTGCTTCTGCAGAAGCACAACCTGGAAGAGACTGTGAGCTTCCCCAGAGCCTTGGGGTCAGCTTGA------CTTCTAGTATGGGAAGATGCCTTTGTACAGGCCTC-AAGGTCTAGAACCAG---ACTTACCAAACTC-CAACCTGTGAACTGGGGTTCTATT-CACCTCAAGTGGAAATCGGT-GGCTTGGTCGAGTTAGATATTCTCGCCTCTCTTAATGAACAGACAAACACC--AAC-TC-----------TCCCAAAACACATTTCTCCTGGGAT-CTCA---TACTACTCCGAGTGCTGGTCCCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613447 433 - 96509753 CGT--ATACACCCTCCCCA--TACACATATGTGGTATC-CACAAACAGGCCATTCA-CCCCTCACCTCCCACCCTTTCCTAAAGGAAGCGACCATGAGACCACCTCCTAAATAAACTGGGAAGTGGAG-CCGAGGCAGCCCA-TCCACTGC-G---CATC---AGGCTGCTTCTGCAGAAGCACAACCTGGAAGAGACTGTGAGCTTCCCCAGAGCCTTGGGGTCAGCTTGA------CTTCTAGTGTGGGAAGATGCCTTTGTACAGGTCTC-AAGGTCTAGAACCAG---ACTTACCAAACTC-CAACCTGTGAACTGGGGTTCTATT-CACCTCAAGTGGAAATCGGT-GGCTTGGTCGAGTTAGATATTCTCGCCTCTCTTAATGAACAGACAAACACC--AAC-TC-----------TCCCAAAACACATTTCTCCTGGGAT-CTCA---TACTACTCCGAGTGCTGGTCCCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7105127 433 - 13098629 CGT--ATACATCCTCCCCA--TACACATATGTGGTATC-CACAAACAGGCCATTCA-CCCCTCACCTCCCACCCTTTCCTAAAGGAAGCGACCACGAGACCACCTCCTAAATAAACTGGGAAGTGGAG-CCGAGGCAGCCCA-TCCACTGC-G---CATC---AGGCTGCTTCTGCAGAAGCACAACCTGGAAGAGACTGTGAGCTTCCCCAGAGCCTTGGGGTCAGCTTGA------CTTCTAGTATGGGAAGATGCCTTTGTACAGGCCTC-AAGGTCTAGAACCAG---ACTTACCAAACTC-CAACCTGTGAACTGGGGTTCTATT-CACCTCAAGTGGAAATCGGT-GGCTTGGTCGAGTTAGATATTCTCGCCTCTCTTAATGAACAGACAAACACC--AAC-TC-----------TCCCAAAACACATTTCTCCTGGGAT-CTCA---TACTACTCCGAGTGCTGGTCCCCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071387 433 - 4483953 CGT--ATACACCCTCCCCA--TACACATGTGTGGTATC-CACAAACAGGCCATTCA-CCCCTCACCTCCCACCCTTTCCTAAAGGAAGCGACCACGAGACCACCTCCTAAATAAACTGGGAAGTGGAG-TCGAGGCAGCCCA-TCCACTGC-G---CATC---AGGCTGCTTCTGCAAAAGCACAACCTCAAAGAGACTGTGAGCTTCCCCAGAGCCTTGGGGTCAGCTTGA------CTTCTAGTCTGGGAAGATGCCTTTGTACGGGCCTC-AAGGTCTAGAACCAG---ACTTACCAAACTC-CAACCTGTGAACTGGGGTTCTATT-CACCTCAAGTGGAAATCGGT-GGCTTGGTCGAGTTAGATATTCTCGCCTCTCTTAATGAACAGACAAACACC--AAC-TC-----------TTCCAAAACACATTTCTCCTGGGAT-CTCA---TACTACTCCGAGTGCTGGTCCCCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24702148 433 + 33263144 CGT--ATACACCCTCCCCA--TACACATATGTGGTATC-CACAAACAGGCCATTCA-CGCCTCACCTCCCACCCTTTCCTAAAGGAAGCGACCACGAGACCACCTCCTAAATAAACTGGGAAGTGGAC-CCGAGGCAGACCA-TCCATTGC-G---CATC---AGGCTGCTTCTGCAGAAGCACAACCTGGAAGAGACTGTGAGCTTCCCCAGAGCCTTGGGGTCAGCTTGA------CTTCTAGTCTGGGAAGATGCCTTTGTACAGGCCTC-AAGGTCTAGAACCAG---ACTTACCAAACTC-CAACCTGTGAACTGGGGTTCTATT-CACCTCAAGTGGAAATCAGT-GACTTGGTCGAGTTAGATATTCTCGCCTCTCTTAATGAACAGACAAACACC--AAC-TC-----------TCCCAAAACACATTTCTCCTGGGAT-CTCA---TACTACTCCGAGTGCTGGTCCCCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13976322 433 - 14338769 CGT--ATACACCCTCCCCA--TACACATATGTGGTATC-CACAAACAGGCCATTCA-CCCCTCACCTCCCACCCTTTCCTAAAGGAAGCGACCACGAGACCACCTCCTAAATAAACTGGGAAGTGGAG-CCGAGGCAGCCCA-TCCACTGC-G---CATC---AGGCTGCTTCTGCAGAAGCACAACCTGGAAGAGACTGTGAGCTTCCCCAGAGCCTTGGGGTCAGCTTGA------CTTCTAGTCTGGGAAGATGCCTTTGTACAGGCCTC-AAGGTCTAGAACCAG---ACTTACCAAACTC-CAACCTGTGAACTGGGGTTCTATT-CACCTCAAGTGGAAATCGGT-GGCTTGGTCGAGTTAGATATTCTCGCCTCTCTTAATGAACAGACAAACACC--AAC-TC-----------TCCCAAAACACATTTCTCCTGGGAT-CTCA---TACTACTCCGAGTGCTGGTCCCCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 919700 436 + 1946073 TGTAAATACACCCTCCCCA--TACACATATGTGGTATC-CACAAACAGGCCATTCA-GCCCTCACCTCTCACCCTTTCCTAAAGGAAGCGACCACGAGACCACCTCCTAAATAAACTAGGAAGTGGAG-CCGAGGCAGCCCATTCCACTGA-G---CATC---AGGCTGCTTCTACAGAAGCACAACCTGGAAGAGACTGTGAGCTTCCCCAGAGCCTTGGGGTGAGCTTGA------CTTCTAGTCTGGGAAGATGCCTTTGCACAGGCCTC-AAGGTCTAGAACCAG---ACTTACCAAACTC-CAACCTGTGAACTGGGGTTCTATT-CACCTCAAGTGAAAATCAGT-GGCTTGGTCAAGTTAGATATTCTCGCCTCTCTTAATGAATAGACAAACACC--AAC-TC-----------CCCCAAAACACATTTCTCCTGGGAT-CTCA---TACTACTCCGAGTGCTGGTCCCCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1950331 441 - 2117846 CAT--ATACACCCTCCCCA--CACATATATGTGGTATC-CACAAACAGGTAATTCA-CCCCTCACCTCTCACCCTTTCCTAAAGGAAGTGACCATGAGACCACCTCCTAAATAAACTGGGAAGTAGAG-CTGAGGCAGCCTA-TCCACTGT-G---CATC---AGGCTGCTTCTGCAGAAGCACAACCTGGAAGAGACCATGAGCTTCCCCAGAACCTTGGGGTCAGCTCGC------CGTCTAGTCTGGGAACATCCCTTTACATAGGCCTC-AAGGCCTAGAACCAG---TCTTACCAAA----CAACCTGTGAACTGGGGTTCTAGT-AACCTAAAGTGGAAATCAGT-GGCTTGATCGAGTTTGATCTTCTCACTTCTCTTAATGAATAGATAAGCACCATCCC-TCCCCCCGCC---CTCCAAAATACATTTCTTCTGGCATCCTCA---CACCACTCAGAGTGCTGGCCCCCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8864270 380 - 16357246 CAC--ATACACCCTCCTCA--CACATAAATGAGGTATC-CACAAACAGGTCATTCA-CCCCTCACCTCTCACCCTTTCCTAAAGGAAGTGACCACGAGACCACCTCCTAAATAAACTGGGAAGTAGAG-CTGAGGCAGCCTA-TTCACTGT-G---CATC---AGGCTGCTTCTGCAGAAGCACAACCTGGAAGAGACCGTGAGCTTCCCCAGAACCCTGGGGTCAGCTCAA------CATCTAGTCTGGGAAGATGCCTCTATATAGGTCTC-AAGGCCTAGAACCAG---TCTTACCAAA----CAAC---------------------------------------------------------------CTCACTTCTCTTAATTAATAGACAAACACC--CCC-CCCCCACACCCTGCTCCAAAATACATTTCTTCTGGCATCCTCA---AACCACTCAGAGTGCTGG-CCCCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1347340 420 - 1807191 CAT--ATACACCCTCCCCA--CACATATATGTGGTATC-CACAAACAGGTCATTCA-CCCCTCAC--CTCACCCTTTCCTAAAGGAAGTGACCACGAGACCACCTTCTAAATAAACTGGAAAGTAGAG-CTGAGGCAGCCTA-TTCACTGT-G---CATC---AGGCTGC-GAAGCAGAAGCACAACCTGGAAGAGACCATGAGCTTCCCCAGAACCTTGGGGTCAGCTCAA------CGTCTAGTCTGGGAAGATGCCTCTACATAGGCCTCAAAGGCCTAGAACCAG---TCTTACCTAA----CAACCTGTGAACT---------GT-AACCTAAAGTGGAAATCAGT-GGCTTGATCGAGTTTGATCTTTTCACTTCTCTTAATGAATAGACAAACACA--CCC-CTG----------CTCCAAAATACATTTCTTCTGGCATCCTCA---GACCACTCAGAGTGCTGG-CCCCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27382 423 + 5963231 CAT--ATACACCCTCCCCA--TACATATATGTGGTATC-CACAAACAGGTAATTCA-CCCCTCACCTCTCACCCTTTCCTAAAGGAAGTGACCACGAGACCACCTCCTAAATAAACTGGGAAGTAGAA-----------CTA-TCCACTGT-G---CATC---AGGCTGCTTCTGCAGAAGCACAACCTGGAAGAGACCGTGAGCTTCCCCAGAACCTTGGGGTCAGCTCGA------CGTCTAGTCTGGGAAGATGCCTCTACATAGGCCTC-AAGGCCTAGAACCAG---TCTTACCAAA----CAACCTGTGAACTGGGGTTCTAGT-AACCTAAAGTGGAAATCAGT-GGCTTGATCGAGTTTGATCTTCTCACTTCCCTTAATGAATAGACAAACACC--CCC-CCAC---------CTCCAAAATACATTTCTTCTGGCATCCTCA---TACCACTCAGAGTGCTGGCCCCCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36290817 377 - 42659167 ------TGCAGCCTCTCT---TACTC-CACATGGTATC-T-CAAATAGGCTGTTCA-CCC----CCCCCCACCTTAT------------------------------------AACTAGGAAGTGGGG---------------CCCCCTGC-GCACCATC---AGGTCACCTGTGCTGAATCACAACCTGGAAGAAAATGTAAGTTTCCTCAAAGCCCTGAAATCAACTCTCTATATTTTTTTAGTCTGGGAAAATGCCTTTGCTCATATGTG-AAGGCCTAGAACCAA---TCTTA-CAAATGC-CAGCCTATGCACTGGGGTTCTATT-AAATCAGAAAGGAAATCAGT-AGTTTTAGTGAGTTTAATCTTCCCCTTACTCTTCATGAATAGACAACCCCC--AGC-CC----------------AAAAGCATTCCTACCAGCTACCTCG---TATGATTCAGGGTATTCACCCTGA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82815041 397 + 104043685 CAT-------CCCATCCCA--TGCTT-TCTGTTGTACCGCAGGAATGGG---TACA-AGTCTCATCTTTTCACCTTTCCTAAAGGAAGTGAGCAT----TCACC--------ACACTGGGAAATGGGC-CGGCAGCAG-CCA-TCACCTAT-A---CACCGCTGGGTTGCTTCTGCTG---CACTACTTGAGAGAGAATGAGGGCTTCTCCCAGGCTCTGGAGTTGGCCTAC------TTACTAGTGTGAT-AGATGTTTCTAGAC--------CAGGCCTTGCACCAACTCATTAACCAGATCCACAAACT---AGATAGAGTTCTACTAAAACTCATGTACAAAGCAGTAAGTTTTATTGGGTCTGATATT-TAATTACTCCTGAATCACAGACA--------TTC-CC-----------CTCAAAAAACTAAACCTCTT------CCCAACCTACCACAAAGGCTGTTGGGCCCC- i mm10.chr15 C 0 C 0 s canFam3.chr10 46087112 404 - 69331447 -------GCCGCGTGCCAG--CTCAGCCA------GCT-CAGGAACAGACCAT-CA-CCCCTCACCTTCCACCCTGTTCTAAA-------CCCAAAAGACCA-CTCTTGAATTCTTTGGGACATGAGG----TAGCGGCCCA-CCCACTGCAG---CCCC---TGGTCGCTTTCGCTGAGGTAAAGCCCCGAGGAGACTGAGCTTCCCCCCAAAGCCCTGGGGTCAATTCTT--ACTTCTTTTAGTCTGGGAAAATACCTCTGCTTATGTACC-AAGGCCTATAACCAA---TCTTACCTCGTGC-CAACCTGTGAGCTGGGGTTTCATT-AAACTAAAATGGAAATCAGT-AGTTTTATGGAGTTTGATCTTTGAATTGCTCTTAACGATCAAACACTTTCC--ACT-CC-----------C---------CGTTTCTCCTGGCCT-CCTA---CAGCACATGGAGGG--GCACCCCG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 61201 343 + 1056298 ----------CTCTTCTCACCTCCACACATGTGGTACCTCAAAAACTAGTCACTTGTTCCCATATCTCCCATCTTTTCCTAAACAAGGTGACTAAGAAACCACCTCTCAAGTAGACTGAGAAATGGGG-TGGTGTTGGCCCA-TCACCTGT-G---CTCT---GAGTTGTTTCTGCTGAATTAAAACCTTAAAGGG--TGTGGGTTTCTCCA-------------AGCCTGG------AATCAACTCTGGGAAAATGCCCTTGCTTATAT----AAGGCCTAGAATCAA---TCTTACTAAATGC-CCACCTATAAACAGA----------CA----------GAATTAGT-AGTTTAGTTGAGTTGGATCTCCTAATTTCCCATAACCATTAGACAAGGCCC--CTG-CT-----------TCCC----------------------------------------------------- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5079334 426 - 6317780 I e micMur3.chr7 5715280 499 + 108171978 I a score=829906.000000 s hg38.chr22_GL383582v2_alt 79854 53 + 162811 TGCCAC-GGGTCTCCCTTCAGCATCATGCCCCTCCACCCTCCCAGGGCCAGGAG s panTro5.chr22 28860191 53 + 37823149 TGCCAC-GGGTCTCCCTTCAGCATCATGCCCCTCCACCCTCCCAGGGCCAGGAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41134828 53 + 50109623 TGCCAC-GGGTCTCCCTTCAGCATCATGCCCCTCCACCCTCCCAGGGCCAGGAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157093 53 + 4464012 TGCCAT-GGGTCTCCCTTCAGCATCATGCCCCTCCACCCTCCCAGGGCCAGGAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653220 53 - 115148730 TGCCAC-GGGTCTCCCTTCAGCATCATGACCCTCCACCCTCCCAGGACCAGGAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268871 53 + 92844088 TGCCAC-GGGTCTCCCTTCAGCATCATGCCCCTCCACCCTCCCAGGGCCAGGAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613880 53 - 96509753 TGCCAC-GGGTCTCCCTTCAGCATCATGCCCCTCCACCTTCCCAGGGCCAGGAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7105560 53 - 13098629 TGCCAC-GGGTCTCCCTTCAGCATCATGCCCCTCCACCCTCCCAGGGCCAGGAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071820 53 - 4483953 TGCCAC-GGGTCTCCCTTCAGCATCATGCCCCTCCACCCTCCCAGGGCCAGGAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24702581 53 + 33263144 TGCCAC-GGGTCTCCCTACAGCATCATGCCCCTCCACCCTCCCAGGGCCAGGAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13976755 53 - 14338769 TGCCAC-GGGTCTCCCTTCAGCATCATGCCCCTCCACCCTCCCAGGGCCAGGAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 920136 53 + 1946073 TGCCAC-GGGTCTCCCTTCAGCATCATGCCCCTCCACCCTCTCAGGGCCAGGAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1950772 53 - 2117846 TGTCAT-GGGTCTCCGCTCAGCATCATGCCCCTCTACCTTCCCAGGGCCAGGAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8864650 53 - 16357246 TGCCAC-GGGTCTCCCCTCGGCATCATGCCCCTCCACCTTCCCAGGACCAGGAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1347760 53 - 1807191 TGCCAC-GGGTCTCCCCTCAGCATCATGCCCCTCCACGTTCCCAGGGCCAGAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27805 54 + 5963231 TGCCACGGGGTCTCCCCTCAGCATCATGCCCCTCCACCTTCCCAGGGCCAGGAG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5715779 53 + 108171978 TGCCAC-AGGTTTCTTTTCAGTATCATGCCTTTCCACCCTCCCAGGGCTAGGAG i micMur3.chr7 I 499 I 131 s proCoq1.NW_012136747v1 5079760 53 - 6317780 TGCCAC-AGGTTTTCCTTCAGTACCATGCCTTTCCACTCTCCCAGGACCAGGAG i proCoq1.NW_012136747v1 I 426 C 0 s otoGar3.GL873526 36291194 51 - 42659167 -GCCAC-AGGTCTCCCTTCAGTATCATGTCTCCCTACCCTCCCAGGGC-AGGAG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82815438 53 + 104043685 TTCCCC-AGGGAGTCATTCAGTTCAGTGACACGCCACCTTCCAAAGGCCAGGAG i mm10.chr15 C 0 C 0 s canFam3.chr10 46087516 47 - 69331447 GGGCAC-AGGTCTCCCTCCAGCA-----CCTCTCC-CCTGTCCAGGGCCAGGAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 61544 28 + 1056298 ------------------------CACACCCCTCTTCCCTCC--AGGCCAGAAG i dasNov3.JH570235 C 0 C 0 a score=695357.000000 s hg38.chr22_GL383582v2_alt 79907 76 + 162811 GGGACTAACAGCCGGAGGCACAG--GTGGGGACAGG-----TGTGGGTGAGGC----CCACCAACACCTGGTCTTCAGGTC--TTTCAG s panTro5.chr22 28860244 76 + 37823149 GGGACTAACAGCCGGAGGCACAG--GTGGGGACAGG-----TGTGGGTGAGGC----CCACCAACACCTGGTGTTCAGGTC--TTTCAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41134881 76 + 50109623 GGGACTAACAGCCGGAGGCACAG--GTGGGGACAGG-----TGTGGGTGAGGC----CCACCAACACCTGGTGTTCAGGTC--TTTCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157146 76 + 4464012 GGGACTAACAGCCGGAGGCACAG--GTGGGGACAGG-----TGTGGGTGAGGC----CCACCAACACCTGGTCTTCAGGTC--TTTCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653273 76 - 115148730 CGGACTAGCAGCCGGAGGAACAG--GTGGGGACAGG-----TGTGGGTGAGGC----CCACCAACACCTGGTCTTCAAGTC--TTTCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268924 63 + 92844088 TGGACTGGCAGTTAGAGGC------------ACAGG-----CATGGGTGAGGC----GCAC---CATCTGGTCTTCAGATC--TTTCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613933 63 - 96509753 TGGACTGGCAGTTAGAGGC------------ACAGG-----CATGGGTGAGGC----GCAC---CATCTGGTCTTCAGATC--TTTCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7105613 73 - 13098629 TGGACTGGCAGTTAGAGGCACAG--GTGGGGACAGG-----CATGGGTGAGGC----GCAC---CATCTGGTCTTCAGATC--TTTCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071873 73 - 4483953 TGGACTGGCAGTTAGAGGCACAG--GTGGGGACAGG-----CATGGGTGAGGC----CCAC---CATCTGGTCTTCAGATC--TTTCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24702634 73 + 33263144 TGGACTGGCAGTTAGAGGCACAG--GTGGGGACAGG-----CATGGGTGAGGC----CCAC---CATCTGGTCTTCAGATC--TTCCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13976808 73 - 14338769 TGGACTGGCAGTTAGAGGCACAG--GTGGGGACAGG-----CATGGGTGAGGC----CCAC---CATCTGGTCTTCAGATC--TTTCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 920189 73 + 1946073 TGGACTGGCAGTCAGAGGCACAG--GTGAGGACAGA-----CGTGGGTGAGGC----CCAC---CATCTGGTCTTCAGATC--TTTCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1950825 76 - 2117846 CGGATTGGTAGCTGGAGGCACAG--GTGGGAACAGG-----TGTGGGTGAGGC----CCTACAACACTTGGTCCTTGGGTC--TTTCAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8864703 76 - 16357246 CGGATTGATAGCCGGAGGCACAG--ATGGGGACAGG-----TGTGGGTGAGGC----CCTACAACACTTGGTCCTTGGGTC--TTTCAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1347813 76 - 1807191 CGGATTGGTAGCCGGAGGCACAG--GTGGGGACAGG-----TGTGGGTGAGGC----CCTACAACACTTGGTCCTTGGGTC--TTTCAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27859 76 + 5963231 TGGATTGGTAGCCGGAGGCACAG--GTGGGGCCAGG-----CATGGGTGAGGC----CCTACAACACTTGGTCCTTCGGTC--TTTCAG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5079813 75 - 6317780 AGGGCTGGCA-CCCAAGGCACAA--GAGGGGACAGG-----TGTGGGTGAGGT----CTTCCAATGCCTGCTTTTTAGGTC--TTTCAG i proCoq1.NW_012136747v1 C 0 I 47 s otoGar3.GL873526 36291245 75 - 42659167 CAGGCCAGCAGCCCCAGGCACAA--GTGGAGACAAG-----TGTGGGTGAGGT----CCTCTAATGCCTG-GTTTTAGGTC--TTTCAG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82815491 71 + 104043685 -------AAGGCTACAGCTACAGCATAGGGAACGGG-----CACGGGTGAAGC----CTCCCAGTGTCTGGGGTTTACCCCTATTTC-- i mm10.chr15 C 0 C 0 s canFam3.chr10 46087563 53 - 69331447 CAGGC-GGCAGCCCGAGGGCCAG---------------------------GGT----CCTCCAATGTCTGGTCTGTAGA----TGGCAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 61572 77 + 1056298 -------GCAGCC-GAGGTGCTG--GAGGGTAAGGGTACGATGCGGGGGTGGCCTGGCCTCTGACGTCAGGTCTCTAGATC--TCTGAG i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5715832 131 + 108171978 I a score=531165.000000 s hg38.chr22_GL383582v2_alt 79983 49 + 162811 GAGGAGCC---ACCCTCGAT---CC---CATCCCTGCTGG------TA-------GCTCTT----GGGGCCTCTG s panTro5.chr22 28860320 49 + 37823149 GAGGAGTC---ACCCTCGAT---CC---CATCCCTGCTGG------TA-------GCTCTT----GGGGCCTCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41134957 49 + 50109623 GAGGAGCC---ACCCTCGAT---CC---CATCCCTGCTGG------TA-------GCTCTT----GGGGCCTCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157222 49 + 4464012 GAGGAGCC---ACCCTCGAT---CC---CATCCCTGCTGG------TA-------GTTCTT----GGGGCCTCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653349 49 - 115148730 GAGGAGCC---ACCCTCGAT---CC---CATCCCTGCTGG------TA-------GCTCTT----GGGGCCTCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84268987 49 + 92844088 GAGGAGCC---ACCCTTGAT---CC---CATCCCTGCTAG------CA-------GCTCTT----GGGGCCTCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87613996 49 - 96509753 GAGGAGCC---ACCCCTGAT---CC---CATCCCTGCTAG------TA-------GCTCTT----GGGGCCTCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7105686 49 - 13098629 GAGGAGCC---ACCCTTGAT---CC---CATCCCTGCTAG------TA-------GCTCTT----GGGGCCTCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071946 49 - 4483953 GAGGAGCC---ACCCTTGAT---CC---CATCCCTGCTAG------TA-------GCTCTT----GGGGCCTCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24702707 49 + 33263144 GAGGAGCC---ACCCTTGAT---CC---CATCCCTGCTAG------TA-------GCTCTT----GGGGCCTCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13976881 49 - 14338769 GAGGAGCC---ACCCTTGAT---CC---CATCCCTGCTAG------TA-------GCTCTT----GGGGCCTCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 920262 49 + 1946073 GAGGAGCC---ACCCTTGAT---CC---CATCCCTGCTAG------TA-------GCTCTT----GGGGCCTCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1950901 49 - 2117846 GAGGAGCC---ACCCTTGAT---CC---CATCCCCACTGG------TA-------GCTCTT----GGGGCCTCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8864779 54 - 16357246 AAGGAGCC---ACCCTTGAT---CC---CATCCCTGCTGGCAGC-TCA-------GCTCTT----GGGGCCCCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1347889 49 - 1807191 AAGGAGCC---ACCCTTGAT---CC---CATCCCCGCTGG------TA-------GCTCTT----GGGGCCCCTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27935 49 + 5963231 GAGGAACC---ACCCTTGAT---CC---CATCCCCGCTGG------CA-------GCTCTT----GGGGCCTCTG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36291320 47 - 42659167 ------CC---ACCCTGTGT---CC---CAGTTCTGCTGGGAACACAA-------GCTCTT----GGGCCCTG-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82815562 42 + 104043685 ------CC---AGCTACATA---GC---CAGCTCCACTGA------GA-------GTGC-A----GGGGTCAGTG i mm10.chr15 C 0 C 0 s canFam3.chr10 46087616 48 - 69331447 GAAACACC---CCCTTCCCTCCCCC---CGGCCCTACTGG------GG-------GCAC--------ACCCTCTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 61649 66 + 1056298 GAAGAGCCCCGGCTCTCAAT---CCCCTCAACCCCGCTGA------AAAGCTCAGGCTCTTACTCAGTGCCTCTG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5079888 47 - 6317780 I e micMur3.chr7 5715832 131 + 108171978 I a score=1769354.000000 s hg38.chr22_GL383582v2_alt 80032 92 + 162811 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGGAAGACAGAAGGGGACAGTCAGATGGAGACTTC---------- s panTro5.chr22 28860369 92 + 37823149 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGGAAGACAGAAGGGGACAGTCAGATGGAGACTTC---------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135006 92 + 50109623 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGGAAGACAGAAGGGGACAGTCAGATGGAGACTTC---------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157271 92 + 4464012 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGGAAGACAGAAGGGGACAGTCAGATGGAGACTTC---------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653398 92 - 115148730 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGGAAGACAGAAGGGGACAGTCAGATGGAGACTTC---------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84269036 92 + 92844088 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGGAAGACAGAAGGGGACAGTCAGATAGAGACTTC---------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87614045 92 - 96509753 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGGAAGAGAGAAGGGGACAGTCAGATAGAGACTTC---------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7105735 92 - 13098629 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGGAAGACAGAAGGGGACAGTCAGATAGAGACTTC---------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4071995 92 - 4483953 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGGAAGACAGAAGGGGACAGTCAGATAGAGACTTC---------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24702756 92 + 33263144 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGGAAGACAGAAGGGGACAGTCAGATAGAGACTTC---------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13976930 92 - 14338769 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGAAAGACAGAAGGGGACAGTCAGATAGAGACTTC---------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 920311 92 + 1946073 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGGAAGACAGAAGGGGACAGTCAGGTAGAGACTTC---------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1950950 92 - 2117846 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAATTCTCCTCATGTAGCAAACAATCTGCAAGACAGAAGGGGACAGTCAGATGGAGACTTT---------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8864833 92 - 16357246 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGCAAGACAGAAGGGGACAGTCAGATGGAGACTTT---------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1347938 92 - 1807191 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGCAAGACAAAAGGGGACAGTCAGATGGAGACTTT---------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 27984 92 + 5963231 ACTCACCTTGTGCTTAGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTGCAAGACAGAAGGGGACAGTCAGATGGAGACTTT---------- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5715963 92 + 108171978 ACTCACCTTGTGCTTGGGGCACCTCACCGAGAAGTTTTCTTCATGTAGCAAACAATCTGCAAGATAGAATGAGACAGTCAGATGGAGACTTC---------- i micMur3.chr7 I 131 I 713 s proCoq1.NW_012136747v1 5079935 92 - 6317780 ACTCACCTTGTGCTTGGGGCACCTCACCGAGAAGTTTTCTTCATGTAGCAAACAATCTGCAAGATAGAATGGCACAGTCAGATGGAGACTTC---------- i proCoq1.NW_012136747v1 I 47 I 10 s otoGar3.GL873526 36291367 92 - 42659167 ACTCACCTTGTGCTTGGGGCACCTCACCGAGAAGTTCTCTTCATGTAGCAAACAATCTGCAAGATAGAAGGGAACAGTCAGATGGAAATGTT---------- i otoGar3.GL873526 C 0 I 1 s mm10.chr15 82815604 86 + 104043685 ACTCACCTTGTGCTTGGGGCACCTCACCGAGAAATTCTCCTCATGCAGCAAACAATCTACAAAACA-----AGACAGTCAGATTAGAATGT----------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46087664 83 - 69331447 ACTCACCTTGTGCTTGGGGCACCTCACCGAGAAGTTCTCCTCATGTAGCAAACAATCTACAAGACAGAAAGGGACAGTCAGAC------------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 61715 102 + 1056298 ACTCACCTTGTGCTTGGGGCACCTCACTGAGAAGTTCTCCTCGTGCAGCAAACAATCTGTAAGACAGGAGGAGACAGTCAGATGGAGCCTGCCAGCACAGGC i dasNov3.JH570235 C 0 C 0 a score=895589.000000 s hg38.chr22_GL383582v2_alt 80124 79 + 162811 ACAGCTG-----GACAT-AGGTGTGGTC--ATGCTGGCTGGGATTGACAGGGTCAGACATAAAGGTAGCAG-Gtcgctacac--ttactt s panTro5.chr22 28860461 79 + 37823149 ACAGCTG-----GACAT-AGGTGTGGTC--ATGCTGGCTGGGATTGACAGGGTCAGACATGAAGGTAGCAG-Gtcgctacac--ttactt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135098 79 + 50109623 ACAGCTG-----GACAT-AGGTGTGGTC--ATGCTGGCTGGGATTGACAGGGTCAGACATGAAGGTAGCAG-Gtcgctacac--ttactt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157363 79 + 4464012 ACAGCTG-----GACGT-AGGTGTGGTC--ATGCTGGCTGGGATTGACAGGGTCAGACATGAAAGTAGAAG-GTCGCTACAC--TTACTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653490 79 - 115148730 ACAGCTG-----GACGT-AGGTGTGGTC--ATGCTGGCTGGGATTGACAGGGTCAGACATGAAGGTAGGAG-GTCGCTACAC--TTACTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84269128 79 + 92844088 ACAGCTG-----GACGT-ATGTGTGGTC--ATACTGGCTGGGATTGACAGGGTCAGACATAAAACTAGGAG-GTCCCTACAC--TTACTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87614137 79 - 96509753 ACAGCTG-----GACGT-ATGTGTGGTC--ATACTGGCTGGGATTGACAGGGTCAGACATAAAACTAGGAG-GTCCCTACAC--ttactt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7105827 79 - 13098629 ACAGCTG-----GACGT-ATGTGTGGTC--ATACTGGCTGGGATTGACAGGGTCAGACATAAAACTAGGAG-GTCCCTACAC--GTACTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4072087 79 - 4483953 ACAGCTG-----GACGT-ACGTGTGGTC--ATACTGGCTGGGATTGACAGGGTCAGACATAAAACTAGGAG-GTCCCTACAC--TTACTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24702848 79 + 33263144 ACAGCTG-----GATGT-ACGTGTGGTC--ATACTGGCTGGGATTGACAGGGTCAGACATAAAACTAGGAG-GTCCCTACAC--TTACTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13977022 79 - 14338769 ACAGCTG-----GACGT-ACGTGTGGTC--ATACTGGCTGGGATTGACAGGGTCAGACATAAAACTAGGAG-GTCCCTACAC--TTACTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 920403 79 + 1946073 ACAGCTG-----GACAT-ATGTGTGGTC--ACACTGGCTGGGATTGACAAGGTCAGACATAAAACTAGGAG-GTCCCTACAC--TTACTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951042 73 - 2117846 ACAGCTG-----GACGT-GGGTGTACTC--ATGCTGGCTGGGATTGACAGGGTCAGGC--------AGGAG-GTCCCTACACTGTTACTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8864925 73 - 16357246 ACAGCTG-----GACGT-GGGTGTGCTC--ATGCTGGCTGGGATTGACAGAGTCAGGC--------AGGAG-GTCCCTACACTGTTACTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348030 73 - 1807191 ACAGCTG-----GACAC-AGGTGTGCTC--ATGCTGGCTGGGACTGAGAGGGTCAGGC--------AGGAG-GTACCTACAGTGTTACTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28076 74 + 5963231 ACAGCTG-----GACGCAGGGTGTGCTC--ATGCTGGCTGGGATTGACAGGGTCAGAC--------AGGAG-GTCCCTACACTGTTACTT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5080037 81 - 6317780 ATAGCTG-----GACAT-GGGTGTGGCC--ATGCTGGCTGGAATTGACAAGGTCAGACAGGGAGGTAAGAG-GTGCCCATATTGTCATTT i proCoq1.NW_012136747v1 I 10 C 0 s otoGar3.GL873526 36291460 85 - 42659167 TCAGCTGGCAGAGACAT-GGGTG-GGCC--AGGCTGGCTAGGATCAACAGGGTCAGATCTGGAGGTAAGAG-GTCCCCACATTGTCATTT i otoGar3.GL873526 I 1 C 0 s mm10.chr15 82815690 70 + 104043685 -ATGCTT-----AAC-T-GAGTATGGCT--ATACTGGTTGG-----ACAGA--TACACATAAATGTAAGGG-GCCTCAATAC--TGATTT i mm10.chr15 C 0 I 1272 s canFam3.chr10 46087747 83 - 69331447 AGAGCTG-----GTGGG-TGGCACAGCCTAAGGCGGGTGGGGATTGACAGCATCAGACATGGAGATAAGAG-GTCCCCACACGGTGATTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 61817 79 + 1056298 ACAGCCA-----GAGAT-GAG---GGCC--GTGCCGGCCAGGACCGAAAGGGACAGGCATGGAGGCTGGAGCCTTCCCACACTGGTATCT i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5716055 713 + 108171978 I a score=606657.000000 s hg38.chr22_GL383582v2_alt 80203 50 + 162811 ctaataggaaaacattagagaca-acccaagtaagctatga-tacctt-aaca s panTro5.chr22 28860540 50 + 37823149 ctaataggaaaacattagagaca-acccaagtaagctatga-tacctt-aaca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135177 50 + 50109623 ctaataggaaaacattagagaca-acccaagtaagctatga-tacctt-aaca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157442 50 + 4464012 CTAATAGGAAAACATTAGAGACA-ACCCAAGTAAGCTATGA-TACCTT-AACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653569 50 - 115148730 CTAATAGGAAAACATTAGAGACA-ACCCAAGTAAGCTAGGA-TACCTT-AACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84269207 51 + 92844088 CTAATAGGAAAACATTAGAGACA-ACCCAAGTAAGCTACAATTACCTT-AACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87614216 51 - 96509753 ctaataggaaaacattagagaca-acccaagtaagctacaattacctt-aaca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7105906 51 - 13098629 CTAATAGGAAAACATTAGAGACA-ACCCAAGTAAGCTACAATTACCTT-AACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4072166 50 - 4483953 CTAATAGGAAAACATTAGAGACA-ACCCAAGTAAGCTACAA-TACCTT-AACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24702927 50 + 33263144 CTAATAGGAAAACATTAGAGACA-ACCCaagtaagctataa-tacctt-aaca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13977101 50 - 14338769 CTAATAGGAAAACATTAGAGACA-ACCCaagtaagctacaa-tacctt-aaca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 920482 50 + 1946073 CTAATAGGAAAACATTAGAGACA-CCCCAAGTAAGCTGTAA-TACCTT-AACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951115 47 - 2117846 CTA--AGGAAAACATTAGAGACA-ACCCAAGTGAG-TATGA-TACCTT-AACA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8864998 49 - 16357246 CTAATAGGAAAACATTAGAGACA-ACCCAAGTGAG-TATGA-TACCTT-AACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348103 49 - 1807191 CTAACAGGAAAGCATTAGAGACA-ACCCAAGTGAG-TATGA-TACCTT-AACA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28150 49 + 5963231 CTAATAGGAAAACATTAGAGACA-ACCCAAGTGAG-TATGA-TACCTT-AACA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5080118 50 - 6317780 CTAATAGGAAAACATTAGACACA-CCCCAAATAAACTATGA-CACCTT-AACA i proCoq1.NW_012136747v1 C 0 I 225 s otoGar3.GL873526 36291545 47 - 42659167 CTAATAGGAAAACATTAGACATA-CT----ATAAACTATGA-TACCTTAAACA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46087830 45 - 69331447 CTG------AACCATCAGAGACATCCCCaaataaactatgg-taccgc-aaca i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 61896 38 + 1056298 CTAATAGG------------ACA-CCCCCCAAAAAATATTG-TCCCTC-AACA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e micMur3.chr7 5716055 713 + 108171978 I a score=1253733.000000 s hg38.chr22_GL383582v2_alt 80253 141 + 162811 tgatgg-atatcggtcactt-a---aaa-attaacatttgaaaagagttaatggtatg-gaaaacacccatgaaacaaaactgcttgaaaaaacca-------------ggatgtacaaatgtataaatgtg---ctaatttta-ttaaaaTGT-TTCTAC-GCA-TT s panTro5.chr22 28860590 141 + 37823149 tgatgg-atatcagtcactt-a---aaa-attaacattttaaaagagttaatggtatg-gaaaacacccatgaaacaaaactgcttgaaaaaacca-------------ggatgtacaaatgtataaatgtg---ctaatttta-ttaaaaTGT-TTCTAC-GCA-TT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135227 141 + 50109623 tgatgg-atatcggtcactt-a---aaa-attaacattttaaaagagttaatggtatg-gaaaacacccatgaaacaaaactgcttgaaaaaacca-------------ggatgtacaaatgtataaatgtg---ctaatttta-ttaaaaTGT-TTCTAC-GCA-TT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157492 141 + 4464012 TGATGG-ATATCGGTCACTT-A---AAA-ATTAACATTTTAAAAGAGTTAATGGTTTG-GAAAACACTCATGAAACAAAACTGCTTGGAAAAACCA-------------GGATGTACAGATGTATAAATGTG---CTAATTTTA-TTAAAATGT-TTCTAC-GCA-TT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653619 141 - 115148730 TGATGG-ATATCGGTCACTT-A---AAA-ATTAATATTTTAAAAGAGTTAATGGTATG-GAAAACACTCATGAAACAAAACTGCTTGAAAAAACCA-------------GGATGTACAAATGTATAAATGTG---CTAATTTTA-TTAAAATGT-TTCTAT-GCA-TT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84269258 141 + 92844088 TGATGG-ATATCGGTCACTT-A---AAA-ATTAACATTTTAAAAGAGTTAATGGTATG-GAAAATACTCATGAAACAAAACTGCTTGAAAAAACCA-------------GGATATACAAATGTATAAATGTG---CTAATTTTA-TTAAAATGT-TTCTAT-GCA-TT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87614267 141 - 96509753 tgatgg-atatcggtcactt-a---aaa-attaacattttaaaagagttaatggtatg-gaaaatactcatgaaacaaaactgcttgaaaaaacca-------------ggatatacaaatgtataaatgtg---ctaatttta-ttaaaatgt-ttctat-gca-tt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7105957 141 - 13098629 TGATGG-ATATTGGTCACTT-A---AAA-ATTAACATTTTAAAAGAGTTAATGGTATG-GAAAATACTCATGAAACAAAACTGCTTGAAAAAACCA-------------GGATATACAAATGTATAAATGTG---CTAATTTTA-TTAAAATGT-TTCTAT-GCA-TT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4072216 141 - 4483953 TGATGG-ATATCAGTCACTT-A---AAA-ATTAACATTTTAAAAGAGTTAATGGTATG-GAAAATACTCATGAAACAAAACTGCTTGAAAAAACCA-------------GGATATACAAATGTATAAATGTG---CTAATTTTA-TTAAAATGT-TTCTAT-GCA-TT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24702977 141 + 33263144 tgatgg-atatcggtcactt-a---aaa-attaacattttaaaagagttaatggtatg-gaaaacactcatgaaacaaaactgcttgaaaaaacca-------------ggatatacaaatgtataaatgtg---ctaatttta-ttaaaatgt-ttctat-gca-tt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13977151 141 - 14338769 tgatgg-atatcggtcactt-a---aaa-attaatattttaaaggagttaatggtatg-gaaaatactcatgaaacaaaactgcttgaaaaaacca-------------ggatatacaaatgtataaatgtg---ctaatttta-ttaaaatgt-ttctat-gca-tt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 920532 141 + 1946073 TGATGG-ATATTGGTCACTT-A---AAA-ATTAACATTTTAAAAGAGTTAATGGTATG-GAAAACACTCATGAAACAAAACTGCTTGAAAAAACCA-------------GGATATACAAATGTATAAATGTG---CTAATTTTA-TTAAAATGT-TTCTAT-GCA-TT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951162 112 - 2117846 TGATGGAACATCTGTCATTT-A---AA---------------------------------AAAACATTCATGAAACAAAACTGCTTGAAAAAACCA-------------GGATATACAAATGTATAAATGTA---CTAATTTTA-TTAAAATGT-GTATAT-ACCTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865047 110 - 16357246 AGATGGAACATCTGTCACTT-A---AA---------------------------------AAAACATTCATGAAACAAAACTGCTTGAAAAAACCA-------------GGATATACAAACGTATAAATGTA---CTAATTTTA-Tt-aaatgt-gtatat-acc-tt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348152 111 - 1807191 TGATGGAACATCC-TCACTTAA---AA---------------------------------AAAAAATTCATGAAACAAAACTGCTTGAAAAAACCA-------------GGATATACAAATGTATAAATGCA---CTAATTTTA-TTAAAATGT-GTATAT-ACC-TT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28199 111 + 5963231 TGATGGAATATCTGTCACTT-A---AA---------------------------------AAAACATGCATGAAATAAAACTGCTTGAAAAAAACA-------------GAATATACAAATGTATAAATGTA---CTAATTTTA-TTAAAATGT-GTATAT-ACC-TT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36291592 153 - 42659167 CAATGGACTATCAGCTACTT-GTataaa-tatactaattctactaaaatgtttgtatg-cataaaagactgaaaagtaatctactgaaacttaacagttgttccctttgggttgttaaaat-tgtaaa--------taattttactttttattt-atttat-ttt-tg i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46087875 146 - 69331447 tgatggagtatcagtcactt-a---aaattttaatgtttcaaaacagttaatgttatgaggaaactctgatgacacaaaatggcttgaaa--acca-------------ggatatgtaaacatcgaagtacaatcctaattgta-tcaaaatgtattatat-gca-tt i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 61934 137 + 1056298 TGATAG---ATCAGTCACTT-A---AAAAATTAACATTTTAAAACTGTTAACAATGTGAGGAAACA------ACACAAAACTGCTTCaaaaag-ca-------------ggacattcagatgtctaagaataatcctaatttta-tcaaaatgc-tttgatagca-t- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I a score=11849.000000 s hg38.chr22_GL383582v2_alt 80394 1 + 162811 A s panTro5.chr22 28860731 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135368 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157633 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653760 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84269399 1 + 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87614408 1 - 96509753 a i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7106098 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4072357 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24703118 1 + 33263144 a i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13977292 1 - 14338769 a i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 920673 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951274 1 - 2117846 A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865157 1 - 16357246 a i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348263 1 - 1807191 A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28310 1 + 5963231 A i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36291745 1 - 42659167 a i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 62071 1 + 1056298 g i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e canFam3.chr10 46088021 0 - 69331447 C e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I a score=505576.000000 s hg38.chr22_GL383582v2_alt 80395 56 + 162811 AAAAA--AG------------ACTTGGggctgggtaccatggc-tcacacct----gtaatc-ccagcactttggg s panTro5.chr22 28860732 56 + 37823149 AAAAA--AG------------ACTTGGggctgggtaccatggc-tcacacct----gtaatc-ccagcactttggg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135369 56 + 50109623 AAAAA--AG------------ACTTGGggctgggtaccatggc-tcacacct----gtaatc-ccagcactttggg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157634 56 + 4464012 AAAAA--AG------------ACTTGGggctgggtaccatggc-tcacacct----gtaatc-ccagcactttggg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653761 56 - 115148730 AAAAA--AG------------ACTTGGggctgggtaccatggc-tcacacct----gtaatc-ccagcactttggg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84269400 56 + 92844088 AAAAA--AG------------ACTTGAggctgggcatggtggc-tcatacct----ataatc-ccagcactttggg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87614409 56 - 96509753 aaaaa--ag------------acttgaggctgggcatggtggc-tcatacct----ataatc-ccagcactttggg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7106099 56 - 13098629 AAAAA--AG------------ACTTGAggctgggcatggtggc-tcatacct----ataatc-ccagcactttggg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4072358 56 - 4483953 AAAAA--AG------------ACTCGAggctgggcatggtggc-tcatacct----ataatc-ccagcactttggg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24703119 56 + 33263144 aaaaa--ag------------actcgaggctgggcatggtggc-tcatacct----ataatc-ccagcactttggg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13977293 56 - 14338769 aaaaa--ag------------actcgaggctgggcatggtggc-tcatacct----ataatc-ccagcactttggg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 920674 56 + 1946073 AAAAA--AG------------GCTTGAggctgggcatggtggc-tcacacct----ataatc-ccagcactttggg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951275 58 - 2117846 AAAAAACAG------------ACTAGGggctgggtatggtggc-tcacacct----gtaatc-ctagccctttgga i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865158 58 - 16357246 aaaaaacag------------actaggggctgggtatggtagc-tcacacct----gtaatc-atagccttttgga i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348264 58 - 1807191 AAAAAACAG------------ACTAGGggctgggtatggtggc-ttacacct----gtaatc-atagccctttgga i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28311 58 + 5963231 AAAAAACAG------------ACTAGGggctgggtatggtgga-tcacacct----gtaatc-atagccctctgga i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36291746 74 - 42659167 gacag--agtttcacttactaactctcggtagagtgctgtggcatcacagctcacagcaacctccaactccttggg i otoGar3.GL873526 C 0 I 467 e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e canFam3.chr10 46088021 0 - 69331447 C e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I a score=200486.000000 s hg38.chr22_GL383582v2_alt 80451 21 + 162811 aggccgaggcagaaagatcac s panTro5.chr22 28860788 21 + 37823149 aggccgaggcagaaagatcac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135425 21 + 50109623 aggccgaggcagaaagatcac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157690 20 + 4464012 aggcc-aggcagaaagatcac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653817 21 - 115148730 aggccgaggcagaaagatcac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84269456 21 + 92844088 aggccaaggcagaaagatcac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87614465 21 - 96509753 aggccaaggcagaaagatcac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7106155 21 - 13098629 aggccaaggcagaaagatcac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4072414 21 - 4483953 aggccaaggcagaaagatcac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24703175 21 + 33263144 aggccaaggcagaaagatcac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13977349 21 - 14338769 aggccaaggcagaaagatcac i manLeu1.NW_012102031v1 C 0 I 701 s colAng1.NW_012115588v1 920730 21 + 1946073 aggccaaggcagaaagatcac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951333 21 - 2117846 agcgtgaggcagaaggatcac i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865216 21 - 16357246 agcctgaggcagaaggatcac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348322 21 - 1807191 agcctgaggcagaaggatcac i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28369 21 + 5963231 agcctgaggcagaaggatcac i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e canFam3.chr10 46088021 0 - 69331447 C e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I a score=500649.000000 s hg38.chr22_GL383582v2_alt 80472 55 + 162811 ttgaatccaagagtcaagaccagcttgcgcaacacagtgagatcctgtcactatt s panTro5.chr22 28860809 55 + 37823149 ttgaatccaagagtcaagaccagcttgggcaacacagtgagatcctgtcactatt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135446 55 + 50109623 ttgaatccaagagtcaagaccagcttgggcaacacagtgagatcctgtcactatt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157710 55 + 4464012 ttgaatccaagagtcaagaccagcttgggcaacacagtgagatcctgtcactatt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653838 55 - 115148730 ttgagtccaagagtcaagaccagcttgggcaacacagtgagatcctgccactatt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84269477 55 + 92844088 ttgagtccaagagtcaagaccagcttgggcaacacagtgagatcctgtcactatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87614486 55 - 96509753 ttgagtccaagagtcaagaccagcttgggcaacacagtgagatcctgtcactatt i macFas5.chr10 C 0 I 489 s macNem1.NW_012012688v1 7106176 55 - 13098629 ttgagtccaagagtcaagaccagcttgggcaacacagtgagatcctgtcaccatt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4072435 55 - 4483953 ttgagtccaagagtcaagaccagcttgggcaacacagtgagatcctgtcactatt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24703196 55 + 33263144 ttgagtccaagagtcaagaccagcttgggcaacacagtgagatcctgtcactatt i chlSab2.chr19 C 0 I 1 s colAng1.NW_012115588v1 920751 55 + 1946073 ttgagtccaagagtcaagactagcttgggcaacacagtgagatcctgttactatt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951354 55 - 2117846 ttgagtctaagagtcaagaccagcttgggcaacacagtgagaccctgttactatt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865237 55 - 16357246 ttgagtctaagagtcaagaccagcttgtgcaacagaatgagaccctgttactatt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348343 55 - 1807191 ttgagtctaagagtcaaggccagcttgggcaacagagtgagactctgttactatt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28390 55 + 5963231 ttgagtctaagagtcaagaccagcctggacaacacagtgagaccctgttactatt i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e canFam3.chr10 46088021 0 - 69331447 C e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I e manLeu1.NW_012102031v1 13977370 701 - 14338769 I a score=40481.000000 s hg38.chr22_GL383582v2_alt 80527 5 + 162811 aaaaa s panTro5.chr22 28860864 5 + 37823149 aaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135501 5 + 50109623 aaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157765 5 + 4464012 aaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653893 5 - 115148730 aaaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84269532 5 + 92844088 aaaaa i rheMac8.chr10 C 0 I 1 s macFas5.chr10 87615030 5 - 96509753 aaaaa i macFas5.chr10 I 489 C 0 s macNem1.NW_012012688v1 7106231 5 - 13098629 aaaaa i macNem1.NW_012012688v1 C 0 I 830 s cerAty1.NW_011999588v1 4072490 5 - 4483953 aaaaa i cerAty1.NW_011999588v1 C 0 I 1 s chlSab2.chr19 24703252 4 + 33263144 aaaa- i chlSab2.chr19 I 1 I 1 s colAng1.NW_012115588v1 920806 5 + 1946073 aaaaa i colAng1.NW_012115588v1 C 0 I 1 s calJac3.chrUn_GL286373 1951409 5 - 2117846 aaaaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865292 5 - 16357246 aaaaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348398 5 - 1807191 aaaaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28445 5 + 5963231 aaaaa i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e canFam3.chr10 46088021 0 - 69331447 C e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I e manLeu1.NW_012102031v1 13977370 701 - 14338769 I a score=7712.000000 s hg38.chr22_GL383582v2_alt 80532 8 + 162811 aaaaaaaa s panTro5.chr22 28860869 8 + 37823149 aaaaaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135506 7 + 50109623 aaaaaaa- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157770 8 + 4464012 aaaaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653898 8 - 115148730 aaaaaaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84269538 7 + 92844088 aacaaaa- i rheMac8.chr10 I 1 I 1 s macFas5.chr10 87615035 7 - 96509753 aaaaaaa- i macFas5.chr10 C 0 I 1 s cerAty1.NW_011999588v1 4072496 7 - 4483953 aaaaaaa- i cerAty1.NW_011999588v1 I 1 I 592 s chlSab2.chr19 24703257 7 + 33263144 aaaaaaa- i chlSab2.chr19 I 1 I 1 s colAng1.NW_012115588v1 920812 7 + 1946073 aaaaaaa- i colAng1.NW_012115588v1 I 1 I 1 s calJac3.chrUn_GL286373 1951414 2 - 2117846 -----ag- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865297 2 - 16357246 -----ag- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348403 2 - 1807191 -----ag- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28450 2 + 5963231 -----ag- i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e canFam3.chr10 46088021 0 - 69331447 C e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I e manLeu1.NW_012102031v1 13977370 701 - 14338769 I e macNem1.NW_012012688v1 7106236 830 - 13098629 I a score=-272.000000 s hg38.chr22_GL383582v2_alt 80540 4 + 162811 aaaa s panTro5.chr22 28860877 2 + 37823149 aa-- i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157778 3 + 4464012 aaa- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653906 4 - 115148730 aaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84269546 3 + 92844088 aaa- i rheMac8.chr10 I 1 I 675 s macFas5.chr10 87615043 3 - 96509753 aaa- i macFas5.chr10 I 1 I 11 s chlSab2.chr19 24703265 3 + 33263144 aaa- i chlSab2.chr19 I 1 I 641 s colAng1.NW_012115588v1 920820 3 + 1946073 aAA- i colAng1.NW_012115588v1 I 1 I 477 e aotNan1.NW_018512383v1 28452 0 + 5963231 C e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e canFam3.chr10 46088021 0 - 69331447 C e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I e cebCap1.NW_016107750v1 1348405 0 - 1807191 C e saiBol1.JH378157 8865299 0 - 16357246 C e calJac3.chrUn_GL286373 1951416 0 - 2117846 C e manLeu1.NW_012102031v1 13977370 701 - 14338769 I e cerAty1.NW_011999588v1 4072503 592 - 4483953 I e macNem1.NW_012012688v1 7106236 830 - 13098629 I e panPan2.chr22 41135513 0 + 50109623 C a score=445411.000000 s hg38.chr22_GL383582v2_alt 80544 153 + 162811 tactgaaaggctgggtgtgatggcacttgcctatagtcccagctacttgggaggctgaggtgagaagactgcttgagcccaggagttc-agactgcagtaagctactatcacatc--actgcactatagcctaggcaa------gcaaaactgtct---taaaaa s panTro5.chr22 28860879 153 + 37823149 tactgaaaggctgggtgtgatggcacttgcctatagtcccagctacttgggaggctgaggtgagaagactgcttgagcccaggagttc-agactgcagtaacctactatcacatc--actgcactatagcctaggcaa------gcaaaactgtct---taaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135513 153 + 50109623 tactgaaaggctgggtgtgatggcacttgcctatagtcccagctacttgggaggctgaggtgagaagactgcttgagcccaggagttc-agactgcagtaagctactatcacatc--actgcactatagcctaggcaa------gcaaaactgtct---taaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157781 153 + 4464012 tactgaaagtctgggtgtgatggcacttgcctatagtcccagctacctgggaggctgaggtgagaagtctgcttgagcccaggagttc-agactgcagtgagctactatcacatc--actgcactatagcctaggcaa------gcaaaactgtct---taaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106653910 153 - 115148730 tactgaaaggctgggtgtgatggcacttgcctatagtcccagctacttgggaggctgaggtgggaagactgcttgagcccaggagttc-agactgcagtaagctactatcacatc--actgcactatagcctaggcaa------gcaagactgtct---taaaaa i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87615057 129 - 96509753 aaaaaaaaaGCT-ggcgtagtggctcacacttgtaatcccagcactttggaaggccgaggtgggcggatcac--aagatcaggaaatcaagac---------------------------------cagcctggccaacatggtgaaaccctgtctctattaaaa i macFas5.chr10 I 11 C 0 s calJac3.chrUn_GL286373 1951416 155 - 2117846 -actgaaagactgggtgtgatggcacttgtctatattcccagctacttgggaggctgaagtgggaagactgcttgaactcaggagttcaaggctgcagtgagctatgatcacatcatactgcactatagcctgggcaa------gcaagactgttt---ttaaaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865299 153 - 16357246 -actgaaagactgggtgtgatggcatttgcctatagtcccagctacttgggaggctgaagtgggaagattgctcgagctcaggagttcaaggctgcagtgtgctatgatcacatc--actgcactatagcctgggcaa------acaagattgtct---ttttta i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348405 152 - 1807191 -gctgaaagactgggtgtgatggcgcttgcctatagtcccagctacttgggaggctg-agtgggaagattgcttaagctcaggagttcaaggctgcagtgagctatgatcacatc--actgcaacatagcctgggcaa------acaagactgtct---ttaaaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28452 150 + 5963231 -cctgaaagactgggtgtgatggcacttgcct---gtcccagctacttgggaggctgaagtgggaagattccttgagctcaggagttcaaggctgcagtgagctatgatcacatc--actgcactatagcctgggcaa------gcaagactatct---taaaaa i aotNan1.NW_018512383v1 C 0 I 167 e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e canFam3.chr10 46088021 0 - 69331447 C e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I e colAng1.NW_012115588v1 920823 477 + 1946073 I e manLeu1.NW_012102031v1 13977370 701 - 14338769 I e chlSab2.chr19 24703268 641 + 33263144 I e cerAty1.NW_011999588v1 4072503 592 - 4483953 I e macNem1.NW_012012688v1 7106236 830 - 13098629 I e rheMac8.chr10 84269549 675 + 92844088 I a score=4840.000000 s hg38.chr22_GL383582v2_alt 80697 2 + 162811 aa s panTro5.chr22 28861032 2 + 37823149 aa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135666 2 + 50109623 aa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157934 2 + 4464012 aa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654063 2 - 115148730 aa i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87615186 2 - 96509753 at i macFas5.chr10 C 0 C 0 s calJac3.chrUn_GL286373 1951571 2 - 2117846 aa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865452 2 - 16357246 aa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348557 2 - 1807191 aa i cebCap1.NW_016107750v1 C 0 I 359 e aotNan1.NW_018512383v1 28602 167 + 5963231 I e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e canFam3.chr10 46088021 0 - 69331447 C e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I e colAng1.NW_012115588v1 920823 477 + 1946073 I e manLeu1.NW_012102031v1 13977370 701 - 14338769 I e chlSab2.chr19 24703268 641 + 33263144 I e cerAty1.NW_011999588v1 4072503 592 - 4483953 I e macNem1.NW_012012688v1 7106236 830 - 13098629 I e rheMac8.chr10 84269549 675 + 92844088 I a score=8854.000000 s hg38.chr22_GL383582v2_alt 80699 5 + 162811 aaaaa s panTro5.chr22 28861034 5 + 37823149 aaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135668 5 + 50109623 acaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157936 5 + 4464012 aaaac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654065 5 - 115148730 aaaaa i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87615188 5 - 96509753 acaaa i macFas5.chr10 C 0 C 0 s calJac3.chrUn_GL286373 1951573 5 - 2117846 aaaaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865454 5 - 16357246 aaaaa i saiBol1.JH378157 C 0 I 165 e aotNan1.NW_018512383v1 28602 167 + 5963231 I e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e canFam3.chr10 46088021 0 - 69331447 C e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I e cebCap1.NW_016107750v1 1348559 359 - 1807191 I e colAng1.NW_012115588v1 920823 477 + 1946073 I e manLeu1.NW_012102031v1 13977370 701 - 14338769 I e chlSab2.chr19 24703268 641 + 33263144 I e cerAty1.NW_011999588v1 4072503 592 - 4483953 I e macNem1.NW_012012688v1 7106236 830 - 13098629 I e rheMac8.chr10 84269549 675 + 92844088 I a score=4242.000000 s hg38.chr22_GL383582v2_alt 80704 2 + 162811 aa s panTro5.chr22 28861039 2 + 37823149 aa i panTro5.chr22 C 0 I 7 s panPan2.chr22 41135673 2 + 50109623 aa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157941 2 + 4464012 aa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654070 2 - 115148730 aa i nomLeu3.chr7b C 0 I 9 s macFas5.chr10 87615193 2 - 96509753 aa i macFas5.chr10 C 0 I 36 s calJac3.chrUn_GL286373 1951578 2 - 2117846 aa i calJac3.chrUn_GL286373 C 0 I 170 s saiBol1.JH378157 8865624 2 - 16357246 ag i saiBol1.JH378157 I 165 C 0 e aotNan1.NW_018512383v1 28602 167 + 5963231 I e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e canFam3.chr10 46088021 0 - 69331447 C e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I e cebCap1.NW_016107750v1 1348559 359 - 1807191 I e colAng1.NW_012115588v1 920823 477 + 1946073 I e manLeu1.NW_012102031v1 13977370 701 - 14338769 I e chlSab2.chr19 24703268 641 + 33263144 I e cerAty1.NW_011999588v1 4072503 592 - 4483953 I e macNem1.NW_012012688v1 7106236 830 - 13098629 I e rheMac8.chr10 84269549 675 + 92844088 I a score=46959.000000 s hg38.chr22_GL383582v2_alt 80706 7 + 162811 ctacttg s panTro5.chr22 28861048 6 + 37823149 ctact-g i panTro5.chr22 I 7 C 0 s panPan2.chr22 41135675 7 + 50109623 ctacttg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157943 7 + 4464012 ctacttg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654081 7 - 115148730 ctactca i nomLeu3.chr7b I 9 C 0 s rheMac8.chr10 84270224 7 + 92844088 ctactcg i rheMac8.chr10 I 675 C 0 s macFas5.chr10 87615231 7 - 96509753 ctactcg i macFas5.chr10 I 36 C 0 s cerAty1.NW_011999588v1 4073095 7 - 4483953 ctactcg i cerAty1.NW_011999588v1 I 592 C 0 s chlSab2.chr19 24703909 7 + 33263144 ctactcg i chlSab2.chr19 I 641 C 0 s manLeu1.NW_012102031v1 13978071 7 - 14338769 ctactcg i manLeu1.NW_012102031v1 I 701 C 0 s colAng1.NW_012115588v1 921300 7 + 1946073 ctacttg i colAng1.NW_012115588v1 I 477 C 0 s calJac3.chrUn_GL286373 1951750 7 - 2117846 ctacttg i calJac3.chrUn_GL286373 I 170 C 0 s saiBol1.JH378157 8865626 7 - 16357246 ctacttg i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 28769 7 + 5963231 ctacttg i aotNan1.NW_018512383v1 I 167 C 0 e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e canFam3.chr10 46088021 0 - 69331447 C e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I e cebCap1.NW_016107750v1 1348559 359 - 1807191 I e macNem1.NW_012012688v1 7106236 830 - 13098629 I a score=823958.000000 s hg38.chr22_GL383582v2_alt 80713 110 + 162811 ggaggctgaggca-ggagaatcac-ttgaaccagagagtcggaggttg-cagtg-agccgagatcac----accactgcactccagcctggtgacagagcgagact-ccgtctc-----aaaaa s panTro5.chr22 28861054 112 + 37823149 ggaggctgaggca-gcagaaccaccttgaaccagagagtcggaggttg-cattatagccgagatcac----accactgcactccagcctggtgacagagcgagact-ccatctc-----aaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135682 107 + 50109623 ggaggctgaggca-ggagaatcac-ttgaaccagagagtcggaggttg-cagtg-agccgagatcac----accactgcactccagcctggtgacagagcgagact-ccatct--------aca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3157950 110 + 4464012 ggaggctgaggca-ggagaatcac-ttgaaccagagagtcggaggttg-cagtg-agccgagatcac----accactgcactccagcctggtgacagagcgagact-ccgactc-----aaaca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654088 110 - 115148730 ggaggctgaggca-ggagaatcat-ttgaaccagagagtcggaggttg-cagtg-agccgagatcac----accactgcactccagcctggtgacagagcgagact-ccttttc-----aaaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270231 105 + 92844088 ggaggctgaggca-ggagaatcac-ttgaaccagggagtcagaggttg-cagtg-agctgagatcac----accactgcactctagcctggtgacatagcgagact-ccgtgtc---------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615238 105 - 96509753 ggaggctgaggca-ggagaatcac-ttgaaccagggagtcagaggttg-cagtg-agctgagatcac----accactgcactctagcctggtgacatagcgagact-ccgtctc---------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107066 111 - 13098629 ggaggctgaggca-ggagaatcac-ttgaaccagggagtcagaggttg-cagtg-agctgagatcac----accactgcactctagcctggtgacatagcgagact-ccgtctc----aaaaaa i macNem1.NW_012012688v1 I 830 C 0 s cerAty1.NW_011999588v1 4073102 114 - 4483953 ggaggctgaggcagggagaatcac-ttgaaccagg--gtcagaggttgccagtg-agctgagatcaacaggaccactgaacta-ggcctggtgacagagcaaagac-tcgtctc----aaaaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24703916 115 + 33263144 ggaggctgaggca-ggagaatcac-ttgaaccagggagtcagaggttg-cagtg-agctaagatcac----accactgcactctagcctggtgacagagcgagact-ccgtctcaaaaaaaaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978078 112 - 14338769 ggaggctgaggca-ggagaatcac-ttgaaccagggagtcagaggttg-cagtg-cgctgagatcac----accactgcactctagcctggtgacagagcgagact-ccgcctc---aaaaaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921307 107 + 1946073 ggaggctgaggca-ggagaatcac-ttgaaccagggagtcagaggttg-cagtg-agccgagatcac----actactgcactctagcctggtgacagagcgagactcccatctc---------a i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951757 110 - 2117846 ggaggctgaggca-ggaaaatcgc-ttgaaccagggaatcagaggttg-cagtg-agttaagatggc----accacggcactccagcctggcaacagagcaagact-tcgtttc-----aaaaa i calJac3.chrUn_GL286373 C 0 I 8 s saiBol1.JH378157 8865633 110 - 16357246 ggaggctgacgca-ggaaaatcgc-ttgaaccagggagtcagaggttg-cagtg-agctaagatggt----gccatggctctccagcctggtaacagagcaagact-tcgtctc-----caaaa i saiBol1.JH378157 C 0 I 8 s aotNan1.NW_018512383v1 28776 110 + 5963231 ggaggctgaggca-ggaaaatcgc-ttgaaccagggagtcggaggttg-cagtg-agctaagatggc----gccacggcactccagcctggcaacagagcaagact-tcgtctc-----aaaaa i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e canFam3.chr10 46088021 0 - 69331447 C e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I e cebCap1.NW_016107750v1 1348559 359 - 1807191 I a score=49208.000000 s hg38.chr22_GL383582v2_alt 80823 7 + 162811 aaaaaaa----------- s panTro5.chr22 28861166 7 + 37823149 aaaaaaa----------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135789 7 + 50109623 aaaaaaa----------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158060 7 + 4464012 aaaaaaa----------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654198 7 - 115148730 aaaaaaa----------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270336 4 + 92844088 ---aaaa----------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615343 7 - 96509753 aaaaaaa----------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107177 7 - 13098629 aaaaaaa----------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4073216 7 - 4483953 aaaaaaa----------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704031 7 + 33263144 aaaaaaa----------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978190 7 - 14338769 aaaaaaa----------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921414 7 + 1946073 aaaaaaa----------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951875 7 - 2117846 aaaaaaa----------- i calJac3.chrUn_GL286373 I 8 C 0 s saiBol1.JH378157 8865751 18 - 16357246 aaaaaaaaacaaaaaaac i saiBol1.JH378157 I 8 C 0 s cebCap1.NW_016107750v1 1348918 7 - 1807191 AAAAAAA----------- i cebCap1.NW_016107750v1 I 359 C 0 s aotNan1.NW_018512383v1 28886 1 + 5963231 ------a----------- i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e canFam3.chr10 46088021 0 - 69331447 C e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I a score=24752.000000 s hg38.chr22_GL383582v2_alt 80830 2 + 162811 aa s panTro5.chr22 28861173 2 + 37823149 aa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135796 2 + 50109623 aa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158067 2 + 4464012 aa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654205 2 - 115148730 aa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270340 2 + 92844088 aa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615350 2 - 96509753 aa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107184 2 - 13098629 aa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4073223 2 - 4483953 aa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704038 2 + 33263144 aa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978197 2 - 14338769 aa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921421 2 + 1946073 aa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951882 2 - 2117846 aa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865769 2 - 16357246 aa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348925 2 - 1807191 AA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28887 2 + 5963231 aa i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46088021 2 - 69331447 aa i canFam3.chr10 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e dasNov3.JH570235 62072 0 + 1056298 C e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I a score=463522.000000 s hg38.chr22_GL383582v2_alt 80832 46 + 162811 aaaaaa-----------GACTG-AAAGGAAATCTATGAATATGTAACAATAATTCTCT s panTro5.chr22 28861175 51 + 37823149 aaaaaa------aaaaaGACTG-AAAGGAAATCTATGAATATGTAACAATAATTCTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135798 46 + 50109623 aaagaa-----------GACTG-AAAGGAAATCTATGAATATGTAACAATAATTCTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158069 56 + 4464012 aaaaaa-aaaaaaaaaaGACTG-AAAGGAAATCTATGAATATGTAACAATAATTCTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654207 57 - 115148730 aaaaaaaaaaaaaaaaaGACTG-AAAGGAAATCTAGGAATATGTAACAATAATTCTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270342 46 + 92844088 aaaaaa-----------gaccg-aaaggaaaTCTACGAATATACAACAATAATTCTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615352 46 - 96509753 aaaaaa-----------gaccg-aaaggaaatctacgaatatacaacaataattctct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107186 46 - 13098629 aaaaaa-----------gacca-aaaGGAAATCTACGAATATACAACAATAATTCTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4073225 47 - 4483953 aaaaaa-----------GACCGAAAAGGAAATCTACGAATATACAACAATAATTCTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704040 46 + 33263144 aaaaaa-----------gaccg-aaaggaaatctacgaatatacaacaataattctct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978199 46 - 14338769 aaaaaa-----------GACCG-AAAGGAAATCTACAAATATACAACAATAATTCTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921423 46 + 1946073 aaaaaa-----------GACCG-AAAGGAAATCTACGAATATGTAACAATAATTCTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951884 46 - 2117846 aaaaaa-----------GACTG-AAAGGAAATCTATGAATATATAACAATCATTCTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865771 46 - 16357246 aaaaaa-----------gactg-aaaggaaatcaatgaatatataacaatcattctct i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348927 46 - 1807191 AAAGAA-----------GACTG-AAAGGAAATCTATGAATACATAACAATCATTCTCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28889 46 + 5963231 aaagaa-----------gactg-aaaagaaaTCTATAAATATATAACAATCATTCTCT i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46088023 44 - 69331447 aaccaa-----------gac---aaaggaaacttaccaaaatctaacatcagttctct i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62072 41 + 1056298 aagaaa-----------ggctg-aaaga----ctattaaaatacaactgt-gttttct i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e otoGar3.GL873526 36291820 467 - 42659167 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I a score=627323.000000 s hg38.chr22_GL383582v2_alt 80878 60 + 162811 TTGGGTAAGAAGA-T-ACAGCTGATTTAAATTTTATCTTTTCTATATTCCCACGAT-------------------------------ATCACC s panTro5.chr22 28861226 60 + 37823149 TTGGGTAAGAAGA-T-ACTGCTGATTTAAATTTTATCTTTTCTATGTTCCCACGAT-------------------------------ATCACC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135844 60 + 50109623 TTGGGTAAGAAGA-T-ACAGCTGATTTAAATTTTATCTTTTCTATATTCCCACGAT-------------------------------ATCACC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158125 60 + 4464012 TTGGGTAAGAAGA-T-ACAGCTGACTTAAATTTTATCTTTTCTATATTCCCATGAT-------------------------------ATCACC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654264 60 - 115148730 TTGGGTAAGAAGA-T-ACAGCTGATTTAAATTTTATCTTTTCTATATTCCCATGAT-------------------------------ATCACC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270388 60 + 92844088 TTGGGTAATAAGA-T-ACAGCTGATTTAAATTTGATCTTTTCTATATTCCCATGAT-------------------------------ACCACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615398 60 - 96509753 ttgggtaataaga-t-acagctgatttaaatttgatcttttctatatTCCCATGAT-------------------------------ATCACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107232 60 - 13098629 TTGGGTAATAAGA-T-ACAGCTAATTTAAATTTGATCTTTTCTATATTCCCATGAT-------------------------------ATCACC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4073272 60 - 4483953 TTGGGTAATAAGA-T-ACAGCTGATCTAAATTTGATCTTTTCTATATTCCCATGAT-------------------------------ATCACC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704086 61 + 33263144 ttgggtaataaga-taatagctgatttaaatttgatcttttctatatTCCCATGAT-------------------------------ATCACC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978245 60 - 14338769 TTGGGTAATAAGA-T-ACAGCTGATTTAAATTTGATCTTTTCTATATTCCCATATC-------------------------------ATCACC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921469 60 + 1946073 TTGGGTAATAAGA-T-ACAGCTGATTTAAATTTTATCTTTTCTATATTCCCATGAT-------------------------------ATTACC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951930 60 - 2117846 TTGGGTAATAAGA-T-ACAGCTGATTTAAATTTTATCTTCTCTATAGTCCCATGAT-------------------------------ATCACC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865817 60 - 16357246 ttgggtaataaga-t-acggctgatttaaattttatcttttctATAGTCCCATGAT-------------------------------ATCACC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1348973 60 - 1807191 TTGGGTAATAAGA-T-ACAGCTGATTTAAATTTTATCTTTTCTATAGTCCCATGAT-------------------------------ATCACC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28935 60 + 5963231 TTGGGTAATAAGA-T-AAATATGATTTAAATTTTACCTTTTCTATAGTCCCATGAT-------------------------------ATCACC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36292287 82 - 42659167 ttggctaagtaat-t----------ttaatttttaaaatcttggtatttccatgatgataattatactatttttgaaatcagagacaaTCTCT i otoGar3.GL873526 I 467 C 0 s canFam3.chr10 46088067 81 - 69331447 ttggatagcaagact-agaggtgattttatttttattttttatgtatttccACAAT-----------TATATTAATAATCAGAAACAATCTCC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62113 77 + 1056298 ttggatagtaaga-ttataggtgatgttaattt-----tctttGCATTTTCAGGAT----------GCTGTTTTATAATTAGATATAATCTCC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e proCoq1.NW_012136747v1 5080168 225 - 6317780 I e micMur3.chr7 5716055 713 + 108171978 I a score=51870.000000 s hg38.chr22_GL383582v2_alt 80938 3 + 162811 AAT s panTro5.chr22 28861286 3 + 37823149 AAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135904 3 + 50109623 AAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158185 3 + 4464012 AAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654324 3 - 115148730 AAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270448 3 + 92844088 AAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615458 3 - 96509753 AAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107292 3 - 13098629 AAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4073332 3 - 4483953 AAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704147 3 + 33263144 AAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978305 3 - 14338769 AAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921529 3 + 1946073 AAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951990 3 - 2117846 AAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865877 3 - 16357246 AAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349033 3 - 1807191 AAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28995 3 + 5963231 AAT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5080393 3 - 6317780 AAT i proCoq1.NW_012136747v1 I 225 C 0 s otoGar3.GL873526 36292369 3 - 42659167 AAT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46088148 3 - 69331447 AAT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62190 3 + 1056298 AAT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e micMur3.chr7 5716055 713 + 108171978 I a score=827054.000000 s hg38.chr22_GL383582v2_alt 80941 55 + 162811 AAATGCTA-TTTTAAAAATCCTTGATTCTAGGCTAA-CCCCATTTCTCAGGCTCAAG s panTro5.chr22 28861289 55 + 37823149 AAATGCTA-TTTTAAAAATCCTTGATTCTAGGCTAA-CCCCATTTCTCAGGCTCAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135907 55 + 50109623 AAATGCTA-TTTTAAAAATCCTTGATTCTAGGCTAA-CCCCATTTCTCAGGCTCAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158188 55 + 4464012 AAATGCTA-TTTTAAAAATCCTTGATTCTAGGCTAA-CCCCATTTCTCAGGCTCAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654327 55 - 115148730 AAATGCTA-TTTTAAAAATCCTTGATTCTAGGCTAA-CCCCATTTCTCAGGCTCAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270451 55 + 92844088 AAATGCTA-TTTTAAAAATCCCTGATTCTAGGCTAA-CCCCATTTCCCAGGCTCAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615461 55 - 96509753 AAATGCTA-TTTTAAAAATCCCTGATTCTAGGCTAA-CCCCATTTCCCAGGCTCAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107295 55 - 13098629 AAATGCTA-TTTTAAAAATCCCTGATTCTAGGCTAA-CCCCATTTCCCAGGCTCAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4073335 55 - 4483953 AAATGCTA-TTTCAAAAAATCCTGATTCCTAGCTAA-CCCCATTTCCCAGGCTCAAG i cerAty1.NW_011999588v1 C 0 I 767 s chlSab2.chr19 24704150 55 + 33263144 AAATGCTA-TTTTAAAAATCTCTGATTCTAGGCTAA-CCCCATTTCCCAGGCTCAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978308 56 - 14338769 AAATGCTATTTTTAAAAATCCCTGATTCTAGGCTAA-CCCCATTTCCCAGGCTCAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921532 55 + 1946073 AAATGCTA-TTTTAAAAATCCCTGATTCTAGGCTAA-CCCCATTTCCCAGGCTCAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1951993 55 - 2117846 AAATGCTA-TTTTAAACAACCTTGATTCTAGGCTAA-CCTCATTTCTCAGGCTCAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865880 55 - 16357246 AAATGCTA-TTTTAAACAGCCTTGATTTTAGACTAA-CCCCATTTCTCAGGCTCAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349036 55 - 1807191 AAATGCTA-TTTTAAACAACCTTGATTCTAGGCTAA-CCCCATTTCTCAGGCTCAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 28998 56 + 5963231 AAATGCTA-TTTTAAACAACCTTAATTCTAGGCTAACCCCCATTTCTCAGGCTCAAG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5716768 55 + 108171978 AAATGCTA-TTTTTTAAATCCTCAATTATAGGCTAA-CTCCATTCCCCAGGCTCAAG i micMur3.chr7 I 713 C 0 s proCoq1.NW_012136747v1 5080396 55 - 6317780 AAATGTTA-TTTTTTAAATCCTTGATTATAGGCTAA-CTCCATCCGCCAGGCTGAAG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36292372 51 - 42659167 AAATGCTA-----TGAAATTCTTGATTCTGGGCTAA-CTGCATTTCCCAGGCTCAAG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46088151 55 - 69331447 AAACGTTG-TTTTTAAAATCCCTGATTCTAGGCTAA-GCCCATTCCACAGGCCCAAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62193 52 + 1056298 AAATG----TTTCTAAACACCTTGATTCTAGCCAAA-GCCCATTCCACATGTCCAAG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I a score=16511.000000 s hg38.chr22_GL383582v2_alt 80996 1 + 162811 C s panTro5.chr22 28861344 1 + 37823149 C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135962 1 + 50109623 C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158243 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654382 1 - 115148730 C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270506 1 + 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615516 1 - 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107350 1 - 13098629 C i macNem1.NW_012012688v1 C 0 C 0 s chlSab2.chr19 24704205 1 + 33263144 C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978364 1 - 14338769 C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921587 1 + 1946073 C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1952048 1 - 2117846 C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865935 1 - 16357246 C i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349091 1 - 1807191 C i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 29054 1 + 5963231 C i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5716823 1 + 108171978 C i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5080451 1 - 6317780 C i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36292423 1 - 42659167 C i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46088206 1 - 69331447 C i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62245 1 + 1056298 T i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e cerAty1.NW_011999588v1 4073390 767 - 4483953 I a score=482071.000000 s hg38.chr22_GL383582v2_alt 80997 32 + 162811 CAAAGCCTCCTTGTAAAAACACTTTAAAATCT s panTro5.chr22 28861345 32 + 37823149 CAAAGCCTCCTTGTAAAAACACTTTAAAATCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135963 32 + 50109623 CAAAGCCTCCTTGTAAAAACACTTTAAATTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158244 32 + 4464012 CAAAGCCTCCTTGTAAAAACACTTTAAAATCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654383 32 - 115148730 CAAAGCCTCCCTGTAAAAACACTTTAAAATCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270507 32 + 92844088 CAAAGCTTCCTTGTAAAAACACTTTAAAATCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615517 32 - 96509753 CAAAGCTTCCTTGTAAAAACACTTTAAAATCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107351 32 - 13098629 CAAAGCTTCCTTGTAAAAACACTTTAAAATCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4074157 32 - 4483953 CAAAGCTTCCTTGTAAAAACACTTTAAAATCT i cerAty1.NW_011999588v1 I 767 C 0 s chlSab2.chr19 24704206 32 + 33263144 CAAAGCTTCCTTGTAAAAACACTTTAAAATCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978365 32 - 14338769 CAAAGCTTCTTTGTAAAAACACTTTAAAATCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921588 32 + 1946073 CAAAGCTTCCTTGTAAAAACACTTTAAAATCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1952049 32 - 2117846 CAAAGCCTCCTTGTAAAAACACTTGAAAATCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865936 32 - 16357246 CAAAGCCTCCTTGTAAAAACACTTGAAAATCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349092 32 - 1807191 CAAAGCCTCCTTGTAAAAACACTTGAAAATCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 29055 32 + 5963231 CAAAGCCTCCTTGTAAAAACACTTGAAAATCT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5716824 32 + 108171978 CAAAGACTCATTGTAAAAACATTTTATAATCT i micMur3.chr7 C 0 I 32 s proCoq1.NW_012136747v1 5080452 32 - 6317780 CAAAGCCTCACTGTAAAAACATTTTAAAATCT i proCoq1.NW_012136747v1 C 0 I 2 s otoGar3.GL873526 36292424 32 - 42659167 CAAAGCCTCGCAGTAAAAATGCTTTAAAACCT i otoGar3.GL873526 C 0 I 2 s canFam3.chr10 46088207 31 - 69331447 CTAAGCTTCCTTGAGCCAACACCACAAATCC- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62246 31 + 1056298 -CAAACCTCCTTGTAAAAATCCTTCAAAATAC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I a score=40517.000000 s hg38.chr22_GL383582v2_alt 81029 9 + 162811 AGACGCGTA s panTro5.chr22 28861377 9 + 37823149 AGACGCGTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41135995 9 + 50109623 AGACGCGTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158276 9 + 4464012 AGACGCGTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654415 9 - 115148730 AGACGCGTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270539 9 + 92844088 GGAAGCGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615549 9 - 96509753 GGAAGCGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107383 9 - 13098629 GGAAGCGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4074189 9 - 4483953 GGAAGCGCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704238 9 + 33263144 GGAAGCGCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978397 9 - 14338769 GGAAGCGCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921620 9 + 1946073 GGAAGCGCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1952081 9 - 2117846 GGAATCGTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865968 9 - 16357246 GGAATTGTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349124 9 - 1807191 GGAATCGTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 29087 9 + 5963231 GAAATCGTC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5080486 4 - 6317780 -----AGGC i proCoq1.NW_012136747v1 I 2 C 0 s otoGar3.GL873526 36292458 4 - 42659167 -----AGGT i otoGar3.GL873526 I 2 C 0 s canFam3.chr10 46088238 8 - 69331447 GGTGGCAC- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62277 9 + 1056298 AGAGGCACC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82815760 1272 + 104043685 I e micMur3.chr7 5716856 32 + 108171978 I a score=662382.000000 s hg38.chr22_GL383582v2_alt 81038 49 + 162811 TTTTCTTCTCTGTACAGAGAATGCCCAGGTGTCTGAGACAGAAAGGTGG s panTro5.chr22 28861386 49 + 37823149 TTTTCTTCTCTGTACAGAGAATGCCCAGGTGTCTGAGACAGAAAGGTGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41136004 49 + 50109623 TTTTCTTCTCTGTACAGAGAATGCCCAGGTGTCTGAGACAGAAAGGTGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158285 49 + 4464012 TTTTCTTCTCTGTACAGAGAATGCCCAGGTGTCTGAGACAGAAAGGTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654424 49 - 115148730 TTTTCTTCTCTGTACAGAGAAAGCCCAGGTGTCTGAGACAGAAAGGTGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270548 49 + 92844088 TTTTCTTCTCTGTACAGAGAAAGCCCAGGTGTCTGAGACAGAAAGGTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615558 49 - 96509753 TTTTCTTCTCTGTACAGAGAAAGCCCAGGTGTCTGAGACAGAAAGGTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107392 49 - 13098629 TTTTCTTCTCTGTACAGAGAAAGCCCAGGTGTCTGAGACAGAAAGGTGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4074198 49 - 4483953 TTTTCTTCCCTGTACAGAGAAAGCCCAGGTGTCTGAGACAGAAAGGTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704247 49 + 33263144 TTTTCTTCTCTGTACAGAGAAAGCCCAGGTGTCTGAGACAGAAAGGTGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978406 49 - 14338769 TTTTCTTCTCTGTACAGAGAAAGCCCAGGTGTCTGAGACAGAGAGGTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921629 49 + 1946073 TTTTCTTCTCTGTACAGAGAAAGCCCAGGTGTCTGTGACAGAAAGGTGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1952090 49 - 2117846 TTTTCTTCTCTGTATAGAGAAAGCCCAGGTGTCTGAGACAGAAAGGTGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8865977 49 - 16357246 TTTTCTTCTCTGTACAGAGAAAGCCCAGGTGTGTGGGACAGAAAGGTGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349133 49 - 1807191 TTTTCTTCTCTGTATAGAGAAAGCCCAGGTGTGTGAGACAGAAAGGTGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 29096 49 + 5963231 TTTTCTTCTCTGTATAGAGAAAGCCCAGGTGTCTGAGACAGAAAGGTGG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5080490 49 - 6317780 ACTTATCCTCTGTACAGAGACAGCCCAGGTGTCTGAGACAGAAAAGAGC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36292462 46 - 42659167 ACTTCTCCTCTGTACAGAGGGAGACCAGTTGTCTGAGATAGAAAAG--- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82817032 44 + 104043685 TTTCCCCCTCTGT--AGAGATAGCTCAG-TATTCAAGTTAGAAAGGT-- i mm10.chr15 I 1272 C 0 s canFam3.chr10 46088246 13 - 69331447 CTCTCCCCTCTGT------------------------------------ i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62286 49 + 1056298 TTGCCTCCTCTGTAGAGAGAAAGTCCATGGATGAGAGAAAGAAAGGAAG i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5716856 32 + 108171978 I a score=529087.000000 s hg38.chr22_GL383582v2_alt 81087 33 + 162811 -CCAGGCCCAAGAGCCCCACTGTCACCTTTGCCC s panTro5.chr22 28861435 33 + 37823149 -CCAGGCCCAAGAGCCCCACTGTCACCTTTGCCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41136053 33 + 50109623 -CCAGGCCCAAGAGCCCCACTGTCACCTTTGCCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158334 33 + 4464012 -CCAGGCCCAAGAGCCCCACTGTCACCTTTGCCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654473 33 - 115148730 -CCAGGCCCAAGAGCCCCACTGTCACCTTTGCCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270597 33 + 92844088 -CCAGGCCCAAGAGCCCCACTGTCACCTTTGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615607 33 - 96509753 -CCAGGCCCAAGAGCCCCACTGTCACCTTTGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107441 33 - 13098629 -CCAGGCCCAAGAGCCCCACTGTCACCTTTGCCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4074247 33 - 4483953 -CCAGGCCCAAGAGCCCCACTGTCACCTTTGCCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704296 33 + 33263144 -CCAGGCCCAAGAGCCCCACTGTCACCTTTGCCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978455 33 - 14338769 -CCAGGCCCAAGAGCCCCACTGTCACCTTTGCCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921678 33 + 1946073 -CCAGGCCCAAGAGCCCCACTGTCACCTTTGCCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1952139 33 - 2117846 -CCAGGCCCGAGAGCCCCACTGTCACCTTTGCCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8866026 33 - 16357246 -CCAGGCCTGAGAGACCCACTGTCACCTATGCCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349182 33 - 1807191 -CCAGGCCCGAGAACCCCACTGTCACCTTTGCCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 29145 33 + 5963231 -CCAGGCCCGAGAGCCCCACTGTCACCTTTGCCC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5716888 33 + 108171978 -CCAGGCCTGAGAGCCCCACTGTCACCTTTGCCC i micMur3.chr7 I 32 I 22 s proCoq1.NW_012136747v1 5080539 33 - 6317780 -CCAAGCCTGAGAGCCGCACTGTCACCTTTGTCC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36292508 30 - 42659167 --CAGGA--GAGAGCCCAGTAGTCACCTTCGCTC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82817076 31 + 104043685 ---AAGCCTGGAATTTCTGCTGTCACTTACATCC i mm10.chr15 C 0 C 0 s canFam3.chr10 46088259 26 - 69331447 --------CGAGAGCCCTGCTATCACCTTTGCCG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62335 31 + 1056298 CCCAGAC---AGAGACCTGCTGTTACCTCTGCCC i dasNov3.JH570235 C 0 C 0 a score=450583.000000 s hg38.chr22_GL383582v2_alt 81120 33 + 162811 CACGACCCACGGAGA---------CAC---AGAAGCCTCCAACAC s panTro5.chr22 28861468 33 + 37823149 CACGACCCATGGAGA---------CAC---AGAAGCCTCCAACAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41136086 33 + 50109623 CACGACCCATGGAGA---------CAC---AGAAGCCTCCAACAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158367 33 + 4464012 CACGACCCATGGAGA---------CAC---AGAAGCCTCCAACAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654506 33 - 115148730 TACGACCCATGGAGA---------CAC---AGAAGCCTCCAACAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270630 33 + 92844088 TATGACCCATGGAGA---------CAC---AGAAGCCTCCAACAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615640 33 - 96509753 TATGACCCATGGAGA---------CAC---AGAAGCCTCCAACAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107474 33 - 13098629 TATGACCCATGGAGA---------CAC---AGAAGCCTCCAACAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4074280 33 - 4483953 TATGACCCATGGAGA---------CAC---AGAAGCCTCCAACAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704329 33 + 33263144 TATGACCCATGGAGA---------CAC---AGAAGCCTGCAACAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978488 33 - 14338769 TATGACCCATGGAGA---------CAC---AGAAGCCTCCAACAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921711 33 + 1946073 TATGACCCACGGAGA---------CAC---AGAAGCCTCCAATAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1952172 33 - 2117846 TATAACCCATGGAGA---------CAC---AGAAGCCTCCAACAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8866059 33 - 16357246 TATGACCCATGGAGA---------CAC---GGAAGCCTCCAACAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349215 33 - 1807191 TATGACCCATGGAGA---------CAC---AGAAGTCTCCAGCAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 29178 33 + 5963231 TATGACCCATGGAGA---------CAC---AGAAGCCTCCAACAC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5080572 33 - 6317780 TGCAACTCATGCAGA---------CAC---AGAAGCCACGGATAC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36292538 33 - 42659167 TATAACTCACGGAGA---------CAC---AGAAGCCCCCAGTAC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82817107 26 + 104043685 CACAGCCTCCAAAGA---------CAC---AAGATACT------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46088285 36 - 69331447 TACCACCCATGAGGA---------CACGGGAGAAGTTCCCGGTAC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62366 41 + 1056298 -ACAACCCATGGAGAGAGGTCCATCGG---AGTAGCCCCCTGAAA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5716921 22 + 108171978 I a score=7438460.000000 s hg38.chr22_GL383582v2_alt 81153 462 + 162811 AAATCAC-ATAATCCACACTAAATGCTTCAGA-GGAAGGTAAAATCCCATGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACATGATGA-CAGCATCCT-GGATGGCAGCAA-GGACA--CATCTGCCTCCAGGTGAGCTGAGCTCTC--ACACAAGGGTAGT---GCA-----------------------------TGGATCAGGGCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGA-GACCGACAGCCAGGTCACTGGTGCAAA-ACGCGGTGGCAGAATGTTAATAAATATTGATAACACATTCTCAGAGAGCTCCCAGGC----ACCATGGCAG-GAGGCAGCCAC-----------GGTACTTATC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGCCTG-TGCACCCACAGATTT-CAAGTGCAATAGTA-ATAAG----CAATGAA-------CATACACATGAAAA-CTTTTCAGGTCC-CGGTATCCT s panTro5.chr22 28861501 462 + 37823149 AAATCAC-ATAATCCACACTAAATGCTTCAGA-GGAAGGTAAAATCCCATGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACATGATGA-CAGCATCCT-GGATGGCAGCAA-GGACA--CATCTGCCTCCAGGTGAGCGGAGCTCTC--ACACAAGGGTAGT---GCA-----------------------------TGGATCAGGGCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCAGGA-GACCGACAGCCAGGTCACTGGTGCAAA-ACGCGGTGGCAGAATGTTAATAAATATTGATAACACATTCTCAGAGAGCTCCCAGGC----ACCATGGCAG-GAGGCAGCCAC-----------AGTACTTATC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGCCTG-CGCACCCACAGATTT-CAAGTGCAATAGTA-ATAAG----CAATGAA-------CATACACATGAAAA-CTTTTCAGGTCC-CAGTATCCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41136119 462 + 50109623 AAATCAC-ATAATCCACACTAAATGCTTCAGA-GGAAGGTAAAATCCCATGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACCTGATGA-CAGCATCCT-GGATGGCAGCAA-GGACA--CATCTGCCTCCAGGTGAGCTGAGCTCTC--ACACAAGGGTAGT---GCA-----------------------------TGGATCAGGGCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGA-GACCGACAGCCAGGTCACTGGTGCAAA-ACGCGGTGGCAGAATGTTAATAAATATTGATAACACATTCTCAGAGAGCTCCCAGGC----ACCATGGCAG-GAGGCAGCCAC-----------AGTACTTATC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGCCTG-TGCACCCACAGATTT-CAAGTGCAATAGTA-ATAAG----CAATGAA-------CATACACATGAAAA-CTTTTCAGGTCC-CAGTATCCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158400 462 + 4464012 AAATCAC-ATAATCCACACTAAATGCTTCAGA-GGAAGGTAAAATCCCATGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACATGATGA-CAGCATCCT-GGATGGAAGCAA-GGACA--CATCTGCCTCCAGGTGAGCTGAGCTCTC--ACACAAGGGTAGT---GCA-----------------------------TGGATCAGGGCA-------AGGAAATCTAATTAATGAGTTCACTCTGTACACCACAGCTCCTGGA-GACTGACAGCCAGGTCACTGGTGCAAA-ACGCGGTGGCAGAATGTTAATAAATATTGATAACACATTCTCAGAGAGCTCCCAGGC----ACCATGGCAG-GAGGCAGCCAT-----------GGTACTTATC---CTTG---------------TTAA------------------ATTTAAACTGAGATCAAGACTAGCAGCCTG-TGCACCCACAGATTT-CAAGTGCAATAGTG-ATAAG----CAATGAA-------CATACACATGAAAA-CTTTTCAGGTCC-CAGTATCCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106654539 462 - 115148730 AAATCAC-ATAATCCACACTAAATGCTTCAGA-GGAAGGTAAAATCCCATGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTGGTAACATGATGA-CAGCATCCT-GGATGGCGGCAA-GGACA--CATCTGCCTCCAGGTGAGCTGAGCTCTC--ACACAAGGGTAGT---GCA-----------------------------TGGATCAGGGCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGA-GACCGACAGCCAGGTCACTGGTGCAAA-ACGCGGTGGCAGAATGTTAATAAATATTGATAACACATTCTCAGCGAGCTCCCAGGC----ACCATGGCAG-GAGGCAGCCAC-----------GGTACTTACC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGCCTG-TGTGCCCACAGATTT-CAAGTGCAATAGTA-ATAAG----CAATGAA-------CATACACATGAAAA-CTTTTCAGGTCC-CAGTATCCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84270663 448 + 92844088 AAATCAC-ATAATCCACGCTAAATGCTTCAGA-GGAAGGTAAAATCCCATGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACATGATGA-CAGCATCCT-GGATGGCAGCAA-AGACA--CATCTGCCTCCAGGTGAGTTGAGCTCTC--GCACAAGGGTAGT--------------------------------------------GCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGA-GACCGACAGCCAGGTCACTGGTGCAAA-ACGCGGTGGCAGAATGTTAATAAACATTGATAACACATTCTCAGAGAGCTCCCAGGC----ACCGTTGCAG-GAGACAGCCAT-----------GGTACTTAAC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGTCTG-TGTGCCTGCAGATT---AAGTGCAATAGTA-ATAAG----CAATGAA-------CATACACATGAAAA-CTTTTCAGGTCC-CAGTATCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87615673 448 - 96509753 AAATCAC-ATAATCCACGCTAAATGCTTCAGA-GGAAGGTAAAATCCCATGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACATGATGA-CAGCATCCT-GGATGGCAGCAA-AGACA--CATCTGCCTCCAGGTGAGTTGAGCTCTC--GCACAAGGGTAGT--------------------------------------------GCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGA-GACCGACAGCCAGGTCACTGGTGCAAA-ACGCGGTGGCAGAATGTTAATAAACATTGATAACACATTCTCAGAGAGCTCCCAGGC----ACCATTGCAG-GAGACAGCCAT-----------GGTACTTAAC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGTCTG-TGTGCCTGCAGATT---AAGTGCAATAGTA-ATAAG----CAATGAA-------CATACACATGAAAA-CTTTTCAGGTCC-CAGTATCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107507 448 - 13098629 AAATCAC-ATAATCCACGCTAAATGCTTCAGA-GGAAGGTAAAATCCCATGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACATGATGA-CAGCATCCT-GGATGGCAGCAA-AGACA--CATCTGCCTCCAGGTGAGTTGAGCTCTC--GCACAAGGGTAGT--------------------------------------------GTA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGA-GACCGACAGCCAGGTCACTGGTGCAAA-ACGCGGTGGCAGAATGTTAATAAACATTGATAACACATTCTCAGAGAGCTCCCAGGC----ACCATTGCAG-GAGACAGCCAT-----------GGTACTTAAC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGTCTG-TGTGCCTGCAGATT---AAGTGCAATAGTA-ATAAG----CAATGAA-------CATACACATGAAAA-CTTTTCAGGTCC-CAGTATCCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4074313 448 - 4483953 AAATCAC-ATAATCCATGCTAAATGCTTCAGA-GGAAGGTAAAATCCCATGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACATGATGA-CAGCATCCT-GGATGGCAGCAA-AGACA--CATCTGCCTCCAGGTGAGTTGAGCTCTC--GCACAAGGGTAGT--------------------------------------------GCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGA-GAACGACAGCCAGGTCACTGGTGCAAA-ACGCGGTGGCAGAATGTTAATAAATATTGATAACACATTCTCAGAGAGCTCCCAGGC----ACCATTGCAG-GAGAGAGCCAT-----------GGTACTTAAC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGTCTG-TGTGCCTGCAGATT---AAGTGCAATAGTA-ATAAG----CAATGAA-------CATACACATGAAAA-CTTTTCAGTTCC-CAGTATCCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704362 448 + 33263144 AAATCAC-ATAATCCACGCTAAATGCTTCAGA-GGAAGGTAAAATCCCATGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACATGATGA-GAGCATCCT-GGATGGCAGCAA-AGACA--CATCTGCCTCCAGGTGAGTTGAGCTCTC--GCACAAGGGTAGT--------------------------------------------GCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGA-GACCGACAGCCAGGTCACTGGTGCAAA-ACGCGGTGGCAGAATGTTAATAAATATTGATAACACATTCTCAGAGAGCTCCCAGGC----ACCATGGCAG-GAGACAGCCAT-----------GGTACTTAAC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGTCTG-TGTGCCTGCAGATT---AAGTGCAATAGTA-ATAAG----CAACAAA-------CATACACATGAAAA-CTTTTCAGGTCC-CAGTATCCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978521 448 - 14338769 AAATCAC-ATAATCCACGCTAAATGCTTCAGA-GGAAGGTAAAATCCCATGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACATGATGA-CAGCATCCT-GGATGGCAGCAA-AGACA--CATCTGCCTCCAGGTGAGTTGAGCTCTC--GCACAAGGGTAGT--------------------------------------------GCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGA-GAACGACAGCCAGGTCACTGGTGCAAA-ACGCGGTGGCAGAATGTTAATAAATATTGATAACACATTCTCAGAGAGCTCCCAGGC----ACCATTGCAG-GAGACAGCCAT-----------GGTACTTAAC---CTTG---------------TTAA------------------ATTTAAACTGAGATTCAGACTAGCAGTCTG-TGTGCCTGCAGATT---AAGTGCAATAGTA-ATAAG----CAATGAA-------CATACACATGAAAA-CTTTTCAGGTCC-CAGTATCCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 921744 449 + 1946073 AAATCAC-ATAATCCACACTAAATGCTTCAGA-GGAAGGTAAAATCCCATGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACATGATGA-CAGCATCCT-GGATGGCAGCAA-GGACA--CATCTGCCTCCAGGTGAGTTGAGCTCTT--GCACAAGGGTAGT--------------------------------------------GCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGAGGACCAACAGCCAGGTCACTGGTGCAAA-ACGTGGTGGCAGAATGTTAATAAATATTGATAACACATTCTCTGAGAGCTCCCAGGC----ACCATGGCAG-GAGACAGCCAT-----------GGTACTTAAC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGTCTG-TGTGCCCACAGATT---AAGTGCAATAGTA-ATAAG----CAACAAA-------CATACACATGAAAA-CTTTTCAGGTCC-CAGTATCCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1952205 460 - 2117846 AAATCAC-ATAATCCACACTAAATGCTTCAGA-GGAAGGTAAAATCCCGTGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACATGATGA-CAGCATCCT-GGATGGCAGCAA-GGACA--CATCTGCCTCCAGGTGAGCTGAGCTCTT--ACACAAGGGTAGT---ACA-----------------------------CAGATCAGGGCA-------AGGAAGTCTAATTAATGAGTTCACTCTGCACACCACAGCTTGTAGA-GACTGACAGCCAGGTCACTGGTGCAAG-ACGTGGTGGCAGAATGTTAATAAATATCGATAACACATTCACAGAGAGCTCCCAGGC----ACCATGGCAA-GAGGCAGCCAT-----------GGTACTTACC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGCCTG-TGTGCCCACAGATTT-CAAGTGCAATAGTA-ATAAG----CAAGGAA-------CATACACATGAAAA-C--TTCAGGTCC-CAGTATCTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8866092 461 - 16357246 AAATCAC-ATAATCCACACTAAATGCTTCAGA-GGAAGGTAAAATCCTGTGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACATGATGA-CAGCATCCT-GGACGGCAACAA-GAACA--CATCTGCCTCCAGGTGAGTTGAGCTCTC--ACACAAGGGTAGT-----G-----------------------------CAGATCAGGGCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGA-GACTGACAGCCAGGTCACTGGTGCAAG-ACGTGGTGGCAGAATGTTAATAAATATTGATAACACATTCTCAGAGAGCTCCCAGGC----ACCATGGCAA-GAGGCAGCCAT-----------GGTACTTACC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGCCTG-TGTGCCCACAGATTTCCAAGTGCAATAGTA-ATAAG----CAAGGAA-------CATACACATGAAAA-CTTTTCAGGTCC-CAGTATCCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349248 458 - 1807191 AAATCAC-ACAATCCACACTAAATGCTTCAGA-GGAAGGTAAAATCCTGTGAAGATGCTTTTAATCCTTGGAGG----AAAATGATTCATTCCAACTTGTAACATGATGA-CAGCATCCT-GGATGGCAGCAA-GGACA--CATCTGCCTCCAGGTGAGTTGAGCTCTC--ACACAAGGGTAGT-----G-----------------------------CAGATCAGGGCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGA-GACTGACAGCCAGGTCACTGGTGCAAG-ACGTGGTGGCAGAATGTTAATAAATATTGATAACATATTCTCAGAGAGCTCCCAGGC----ACCATGGCAA-GAGGCAGCCAT-----------GGTACTTACC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGCCTG-TGTGCCCACAGATT--CAAGTGCAATAATA-ATAAG----CAAGGAA-------CATACACATGAAGA-CTTTTCAGGTCC-CAGTATCCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 29211 460 + 5963231 AAATCAC-ATAATCCACACTAAATGCTTCAGA-GGAAGGTAAAATCCTGTGAGGATGCTTTTAATCCTTGGAGG---AAAAATGATTCATTCCAACTTGTAACATGATGA-CAGCATCCT-GGATGGCAGCAA-GGACA--CATCTGCCTCCAGGTGAGTTGAGCTC----GCACAAGGGTAGT---GCA-----------------------------TGGATCAGGGCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGA-GACTGACAGCCAGGTCACTGGTGCAAG-ACGTGGTGGCAGAATGTTAATAAATATTGATAACACATTCTCAGAGAGCTCCCAGGC----ACCATGGCAA-GAGGCAGCCAT-----------GGTACTTACC---CTTG---------------TTAA------------------ATTTAAACTGAGATCCAGACTAGCAGCCTG-TGTGCCCACAGATTT-CAAGTGCAATAGTA-ATAAG----CAAGGAA-------CATACACATGAAAA-CTTTTCAGGTCC-CAGTATCCT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5716943 468 + 108171978 AAATCAC-ATAATCTGTACTAAATGCTTTGGA-GGAAAGTACAATCCCATGAGGATGCTTTTACTCCTTGGAGG---AAAAATGATTCATTCCAACTTTTAACATGGTGA-CAGCATCCT-CGATGACAGCAA-GGACG--AATTTGCCTCCAGGTGAGTCGAGCTCTATGGTGCAAGGGTAGT---GCA-----------------------------TGGATTGGGGCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGG-GAATGAAAGCCAGGTCACTGGTGCAAG-ACGTGGTGGCAGAATGTTAATAAATATTGATCACACAT-CTC--AGAGCTCCCAGGC----ACCATGGCAG-GAGGCAGCCAT-----------GGTACTTATC---CTTG---------------TTAA------------------ATTTAAACTGAGACCCAGATTAGCAGCCTG-TGTACCCACAGATTT-CAAATGCAATGGTA-ATAAG----CAAGGAAACAAGAACACACAAACAAAAA-CTCTTCAGGTCC-CAGTGTCCT i micMur3.chr7 I 22 I 19 s proCoq1.NW_012136747v1 5080605 459 - 6317780 AAATCAC-ATAATCCGCACTAAATGCTTTGGA-GGAAAGTACAATCCCCTGAGGGTGCTTTTACTCCCTGGAGG---AAAAATGATTCATTCCAACTTTTAACATGGTGA-TAGCATCCT-TGATGACATCAA-GGACG--CATGTGCCTCCAGGTGAGTCGAGCTCTATGGTGCAAGGGTAGT---GCA-----------------------------TGGATTGGGGCA-------AGGAAATCTAATTAATGAGTTCACTCTGCACACCACAGCTCCTGGG-GAATGAAAGCCAGGTCACTGGTGCAAG-ACGTGGTGGCAGAATGTTAATAAATATTGATCACACATCCTC--AGAGCTCCCAGGC----ACCATGGCAG-GAGGCAGCCAT-----------GGTACTTATC---CTTG---------------TTAA------------------ATTTAAACTGAGACCCAGATTAGCAGCCTG-TGTACCCACAGATTT-CAAATGCAATGGTA-ATAAG----CAAGGAA----------ACAAACAAAAA-CTCTTCAGGTCC-CAGTGTCCT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36292571 516 - 42659167 AAATCAC-ATAATCCATACTAAACACTTCAGA-GAAAAGTAGAATCCCATGAGGGTGCTTTCACCCCTTGGAGG---AAAAATGATTCATTCCAACTTTTAACACGGTGA-TAGCATCCT-CCATGACAGCAAGGGATG--CATCTGCCTCCAGGTGAGTTGAGCTCTATGGTGCAAGGGTAGA---ACAAGTGGATTGGGGCGAGGAAATGGTACAAGTGGATTGGGGCAGAGGCAGAGGAAATCTATTTAATGAGTTCACCCTGCATACCACAGCTCCCAGG-GACCAAAAGCCAGGTCACTGGTACAAACACGTGGTGGCAGAATGCTAATAAATACTGATCAAACATCCTC--AGCGCTCCCAGGC----ATCACGATGG-AAGGCAGCCATGTGCTGCCAAGGGTGCTTACTACACTTG---------------TTAA------------------ATTTAAACTGAGATCCAGATTAGCAGCCGG-TATACCCACAGATTT-CAGATGTAAGAATA-ATAAG----CAAGGGA------ATATACAAACAAAAAGCTCTTCAGGTTC-CAGTGTCCT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82817133 466 + 104043685 AAATTAC-ACAATTCACACTGAATACTTCAGAGGGAAAACCAAGTCCCATGAGGGTGATTTTAATCCCTGGAGGAAAAAAAATGATATATTCCAACTTTTAACATGGTGA-CAGCATTCC-TGATGGCAGCAA-GAATA--TGTGTGCCTCCAAG-AAGTCCAGCTTTACTGCACAAAGGTGGTAGTGTG-----------------------------TGGAGCAGGGCA-------GATAAATCTAATTAATGAGTTCACTTTGTACATCACAACTCTGACA-GACCGACAGCCAGGTTACCAACGCAGG-ACATGGTGGCAGAATGTTAATAAATATTGATCACACATTCTCAGAGAGCTCTCAGGCACTTACCTTAGTAA-G-------TTT-----------ACTATTTAAC---C---------------------A------------------GTTTAAA-TGAAATCCAGATTAGCAGCCTA-TATAGCCACAGATTT-TAAGTGTAATTGTATATAAGAAGCCGAGGAA-------CACATAAATGAAAA-CTTCTCAGACCCTCAGGATCCT i mm10.chr15 C 0 C 0 s canFam3.chr10 46088321 475 - 69331447 GAACCGC-ATAATCCACACTAAATGCTTCAGG-GGAAAGTGAAATCCCACGAGGGGGTTACTAATCCTTGGAGG----GAAATGATTCATTCCAACTTTTCACATGGTGA-CAGCATCTT-CCCTGACAGCAA-CGACATGCGCCCGCCTCCAGGTGAGCATGGCTCTGTGGCGCAAGGGTAGT---GCA-----------------------------TGGAGCAGGGTG-------AGGCAATCTAATTAATGAATTCGC--TGCACACTACAGCTCCCGGA-GAGCGACAGCCAGGCCACCGGTGCAGG-ATGCAGGGGCAGAATGTTAATAAGTATCGAGCACACGTTCTCAGAGCGCTC-CGGGC----ACCATGGCGG-GAAGCGGCCGT-----------GGTACTTAGC---CCTG---------------TTAAGTGTATGATTCAACTCAGGTTTAAACTCTGCTCCAGATGAACAGCCTG-TGTACC-ACAGATTT-CAAATGAAATAGTA-ATAAG-------GGAA-------C--ACAAATGAAAA-CTTGTGAGGTCCTCTGTATCTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62407 452 + 1056298 ATATCTTGATAATCTGCACTAAACGCTTCAGA-GAAAAGTGAAATTCCTCCAGGGTGCTATTAATCTTCAAAGG----AAAGTGATTCATGCTGACTTTTAACATGTCGATCAGCATCCTAGGCTGACAGCAA-GGACAAGCATCTGCCTCCAGGTGAGCTGAGCACAATGGCAC-AGGGCACT---GCA-----------------------------GGGAGCAAGGCG-------AGGAAATCTAATCAACAAATTTACCTGGTACACCACATTTCCCTGA-AGCCAAAGGCCAGGTATCTGGTGCAGG-TCACAGTGGCAGAATGCT-----------ACCACACATCCCCAGGGAGCTTCCAGGT----ACCACGGTGGTAAAGCAGGCAT-----------GGCCTTTACC---CTTAAGTTTACAATTTAACTCAG------------------GTTTAAACTGGGTTCCAGATTAGCAGCTTATTTTACCCGAAGATTT-------CAATCGGA-ATAAT----CAAGGGG--------------ACGTGAA-CTCCCGAGATCC-T-------- i dasNov3.JH570235 C 0 C 0 a score=228142.000000 s hg38.chr22_GL383582v2_alt 81615 25 + 162811 AAAACAAATC--A-AAAAGACCCTTTTA s panTro5.chr22 28861963 25 + 37823149 AAAACAAATC--A-AAAAGACCCTTTTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41136581 25 + 50109623 AAAACAAATC--A-AAAAGACCCTTTTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158862 25 + 4464012 AAAACAAATC--A-AAAAGACCCTTTTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106655001 25 - 115148730 AAAACAAATC--A-AAAAGACCCTTTTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84271111 24 + 92844088 AAAACAAATC----AAAAGACCCTTTTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87616121 24 - 96509753 AAAACAAATC----AAAAGACCCTTTTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7107955 24 - 13098629 AAAACAAATC----AAAAGACCCTTTTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4074761 24 - 4483953 AAAACAAATC----AAAAGACCCTTTTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704810 24 + 33263144 AAAACAAATC----AAAAGACCCTTTTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978969 24 - 14338769 AAAACAAATC----AAAAGACCCTTTTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 922193 25 + 1946073 AAAACAAATC--A-AAAAGACCCTTTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1952665 25 - 2117846 AAAACAAGTC--A-AAAAGACTCTTTTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8866553 25 - 16357246 AAAACAAGTC--A-AAAAGACTCTTTTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349706 23 - 1807191 AAAATAAGTA--A-AAAAGACTC--TTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 29671 25 + 5963231 AAAACAAGTC--A-AAAAGACTCTTTTA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5081064 20 - 6317780 --AAAAAATAAAA-AAAAAGTCC----- i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36293087 26 - 42659167 -AAACAAATAGAA-AAAAGAGCCTTTCC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82817599 25 + 104043685 -AAACAAATC--AGCTGAGATAGTGGTA i mm10.chr15 C 0 I 1 s canFam3.chr10 46088796 21 - 69331447 -----AAATA--GGCAAAGAGCCTTTCA i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 62859 0 + 1056298 C e micMur3.chr7 5717411 19 + 108171978 I a score=1481372.000000 s hg38.chr22_GL383582v2_alt 81640 127 + 162811 TATTTGGCCAGACCTGGAACATCA--TAGCCTGTCTTTCGTTGG-AGCCCATGAGTATCTAAG----AGAGTGGGC--GGCAGCC--------TTCTTGGCTC----------CGTGGGCCCAAGAGCTCAGCAACTTACTACTAACCTCCAA--G s panTro5.chr22 28861988 127 + 37823149 TATTTGGCCAGACCTGGAACATCA--TAGCCTGTCTTTCGTTGG-AGCCCATGAGTATCTGAG----AGTGTGGGC--GGCAGCC--------TTCTTGGCTC----------CGTGGGCCCAAGAGCTCAGCAACTTACTACTAACCTCCAA--G i panTro5.chr22 C 0 C 0 s panPan2.chr22 41136606 127 + 50109623 TATTTGGCCAGACCTGGAACATCA--TAGCCTGTCTTTCGTTGG-AGCCCATGAGTATCTGAG----AGTGTGGGC--GGCAGCC--------TTCTTGGCTC----------CGTGGGCCCAAGAGCTCAGCAACTTACTACTAACCTCCAA--G i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3158887 127 + 4464012 TATTTGGCCAGACCTGGAACATCA--TAGCCTGTCTTTCGTTGG-AGCCCGTGAGTATCTAAG----AGAGTGGGC--GGCAGCC--------TTCTTGGCTC----------CGTGGGCCCAAGAGCTCAGCAACTTACTACTAACCTCCAA--G i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106655026 127 - 115148730 TATTTGGCCAGACCTGGAACATCA--CAGCCTGTCTTTCGTTGG-AGCCCGTGAGTATCTAAG----AGAGTGGGC--GGCAGCC--------TTTTAGGCTC----------CGTGGGCCCAAGAGCTCAGCAACTTACCACTAACCTCCAA--G i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84271135 126 + 92844088 TATTTGGCCAGACCTGGAACATCA--TAGCCTGTCTTTCGTTGG-AGCCCGTGAATATCTAAG----AGAGT-GGC--GGCAGCC--------TTCTTGGCTC----------TGTGGGCCCAAGAGCTCAGCAACTTACCACTAACCTCCAA--G i rheMac8.chr10 C 0 I 22 s macFas5.chr10 87616145 126 - 96509753 TATTTGGCCAGACCTGGAACATCA--TAGCCTGTCTTTCGTTGG-AGCCCGTGAATATCTAAG----AGAGT-GGC--GGCAGCC--------TTCTTGGCTC----------TGTGGGCCCAAGAGCTCAGCAACTTACCACTAACCTCCAA--G i macFas5.chr10 C 0 I 15 s macNem1.NW_012012688v1 7107979 126 - 13098629 TATTTGGCCAGACCTGGAACATCA--TAGCCTGTCTTTCGTTGG-AGCCCGTGAATATCTAAG----AGAGT-GGC--GGCAGCC--------TTCTTGGCTC----------TGTGGGCCCAAGAGCTCAGCAACTTACCACTAACCTCCAA--G i macNem1.NW_012012688v1 C 0 I 22 s cerAty1.NW_011999588v1 4074785 126 - 4483953 TATTTGGCCAGACCTGGAACATCA--TAGCCTGTCTTTCGTTGG-AGCCCGTGAATATCTAAG----AGAGT-GGC--GGCAGCC--------TTCTTGGCTC----------TGTGGGCCCAAGAGCTCAGCAACTTACCACTAACCTCCAA--G i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704834 124 + 33263144 TATTTGGCCAGACCTGGAACATCA--TAGCCTGTCTTTCGTTGG-AGCTCGTGAATATCTA------AGAGT-GGC--GGCAGCC--------TTCTTGGCTC----------TGTGGGCCCAAGAGCTCAGCAACTTACCACTAACCTCCAA--G i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13978993 124 - 14338769 TATTTGGCCAGACCTGGAACATCA--TAGCCTGTCTTTCGTTGG-AGCCCGTGAATATCTA------AGAGT-GGC--GGCAGCC--------TTCTTGGCTC----------TGTGGGCCCAAGAGCTCAGCAACTTACCACTAACCTCCAA--G i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 922218 126 + 1946073 TATTTGGCCAGACCTGGAACATCA--CAGCCTGTCTTTTGTTGG-AGCCCGTGAATATCTAAG----AGACT-GGC--GGCAGCC--------TTCTTGGCTC----------TGTGGGCCCAAGAACTCAGCAACTTACCACTAACCCCAAA--G i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1952690 133 - 2117846 TATTTGGCCAGACCTGGAATATCA--CAGC----CTTTCATTGG-AGCCTGTGAATATCTAAG----AGAGTGGGC--AGAAGCCTTTTTTTTTTTTTGGCTT----------TGTGGGCCCAAGAGCTTAGCAAGTTATCACTAACCTCCAAACC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8866578 123 - 16357246 TATTTGGCCAGACCTGGAATATCA--CAGC----CTTTCACTGG-AGGCCGTGAATATCTAAG----AGAATGGGC--AGCAGCC--------TTCTTGGCTT----------TGTGGGCCCAAGAGCTTAGCAAGTTATCATTAACCTCCAA--C i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349729 123 - 1807191 TATTTGGCCAGACCCGGAATATCA--CAGC----CTTTCGTTGG-AGCCCATGAATATCTAAG----AGAGTGGGC--AGCAACC--------TTCTTGGCTT----------TGTGGGCCCAAGAGCTTAGCAAGTTATCACTAACCTCCAA--C i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 29696 123 + 5963231 TATTTGGCCAGACCTGGAATATCA--CAGC----CTTTCGTTGG-AGCCCGTGAATATCTAAG----AGAGTGGGC--AGCAGCC--------TTCTTGGTTT----------TGTGGGCCCAAGAGCTTAGTAAGTTATCACTAACCTCCAA--C i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5717430 126 + 108171978 TATTTGCCCAACCCTGGAATATGG--CTACCTGTCTTTGGCTGG-AGTCCCTGAGTATCTAAG----AAAGTGAGC--GGCAGCC--------TTCTCTGCTC----------CCAGGGCCCAAGAGCTCAGCAAGTCATCACTAACCTCCAA--- i micMur3.chr7 I 19 C 0 s proCoq1.NW_012136747v1 5081084 126 - 6317780 TATTTGGCCAACCCTGGAATATTG--CTACCTGTCTTTGGCTGG-AGTCCTCGAGTATCTAAG----AAAGTGAGC--GGCAGCC--------TTCTCTGCTT----------CCAGGGCCCAAGGGCTCAGCAAGTCATCGCTAACCTCCGG--- i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36293113 128 - 42659167 TATTTGGCCAACCCTGGAATCTTGCTCTATCTACCTCTGGGGAGCAGTCCCTGA-CATCTAAG----AGAGTGGGT--AGCAGCT--------TTTTCTGCTC----------CCAGGGCCCAAGAGCTCAGCAAGTCATTGCTAACTTTCAG--- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82817625 118 + 104043685 AATTTGACTCACT----AGTATTA--T-------CTGCCTCTGG-AGTCTCAGATCATCTCATCTACAGGGTAGACT-ATCAGCT--------TTCTTAGATC------------AAGGCCCAAGAACTCACCAG-TTGTCACTAACTTCTAG--G i mm10.chr15 I 1 C 0 s canFam3.chr10 46088817 131 - 69331447 TAATTGGGCTGGCCCGTCCCACCG--GTGC----CTCCCTCTGG-AGCCCCTGAGTCCCCAGG----AGC---GGCCGGGCAGCC--------TCTCTGTCCCGGGGCGAGCCTCAGGGCACAGGAGCTCAGCAAGTC-CGGCTCACCTCTGA--G i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62859 46 + 1056298 -----------------------------------------------------------------------------------------------CTTTGTTA----------AGTTGGCT--AGAGCTCAGAAAGTCATCA-GAACTTCCGG--G i dasNov3.JH570235 C 0 C 0 a score=43494.000000 s hg38.chr22_GL383582v2_alt 81767 3 + 162811 CCC s panTro5.chr22 28862115 3 + 37823149 CCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41136733 3 + 50109623 CCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3159014 2 + 4464012 -CC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106655153 3 - 115148730 CCC i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87616286 3 - 96509753 CAC i macFas5.chr10 I 15 I 4 s cerAty1.NW_011999588v1 4074911 3 - 4483953 CCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704958 3 + 33263144 CCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13979117 3 - 14338769 CTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 922344 3 + 1946073 CCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1952823 3 - 2117846 CCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8866701 3 - 16357246 CCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349852 3 - 1807191 CCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 29819 3 + 5963231 CCC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5717556 3 + 108171978 CCC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5081210 3 - 6317780 CCC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36293241 3 - 42659167 CTC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82817743 3 + 104043685 CCC i mm10.chr15 C 0 C 0 s canFam3.chr10 46088948 3 - 69331447 CCC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62905 3 + 1056298 CCC i dasNov3.JH570235 C 0 C 0 e macNem1.NW_012012688v1 7108105 22 - 13098629 I e rheMac8.chr10 84271261 22 + 92844088 I a score=1691785.000000 s hg38.chr22_GL383582v2_alt 81770 94 + 162811 CTC-------------CCCCAGCAAGCAACTAGCAAGGCAATAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACCAAGACTCCCGCTGCTCCAAT s panTro5.chr22 28862118 94 + 37823149 CTC-------------CCCCAGCAAGCAACTAGCAAGGCAATAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACCAAGACTCCCGCTGCTCCAAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41136736 94 + 50109623 CTC-------------CCCCAGCAAGCAACTAGCAAGGCAATAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACCAAGACTCCCGCTGCTCCAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3159016 94 + 4464012 CTC-------------CCCCAGCAAGCAACTAGCAAGGCAATAAATGAAATGTGTTAATTTAAAACCCACAAGTACACAGTGTGACCAAGACTCCTGCTGCTCCAAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106655156 94 - 115148730 CTC-------------CCACAGCAAGCAACTAGCAAGGCAATAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACCAAGACTCCTGCTGCTCCAAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84271283 94 + 92844088 CTC-------------CCGCAGCAAGCAACTAGCAAGGCAATAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACCAAGACTCCTGCTGCTCCAAT i rheMac8.chr10 I 22 C 0 s macFas5.chr10 87616293 94 - 96509753 CTC-------------CCGCAGCAAGCAACTAGCAAGGCAATAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACCAAGACTCCTGCTGCTCCAAT i macFas5.chr10 I 4 C 0 s macNem1.NW_012012688v1 7108127 94 - 13098629 CTC-------------CCGCAGCAAGCAACTAGCAAGGCAATAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACCAAGACTCCTGCTGCTCCAAT i macNem1.NW_012012688v1 I 22 C 0 s cerAty1.NW_011999588v1 4074914 94 - 4483953 CTC-------------CCGCAGCAAGCAACTAGCAAGGCAATAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACCAAGACTCCTGCTGCTCCAAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24704961 94 + 33263144 CTC-------------CCGCAGCAAGCAACTAGCAAGGCAATAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACCAAGACTCCTGCTGCTCCAAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13979120 94 - 14338769 CTC-------------CCGCAGCAAGCAACTAGCAAGGCAATAAATGAAATGTGTTAATTTAAAACCCACAAGTACACAGTGTGACCAAGACTCCTGCTGCTCCAAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 922347 94 + 1946073 CTC-------------CCGCAGCAAGCAACTAGCAAGGCAATAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACCAAGACTCCTGCTGCTCCAAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1952826 94 - 2117846 TCC-------------CCTCAGCAAGCAACTAGCAAGGCAGTAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACCAAGACTCCTGCTGCTCCAAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8866704 94 - 16357246 CTC-------------CCCCAGCAAGCAACTAGCAAGGCAGTAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACCAAGACTCCTGCTGCTCCAAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349855 94 - 1807191 CTC-------------CCCCAGCAAGCAACTAGCAAGGCAGTAAATGAAATGTGTTAATTTAAAACCCAGAAGTACATAGTGTGACCAAGACTCCTGCTGCTCCAAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 29822 94 + 5963231 CTT-------------CCCCAGCAAGCAACTAGCAAGGCAGTAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACCAAGACTCCTGCTGCTCCAAT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5717559 90 + 108171978 CTC-------------CCCCAGC-AGCAGCTAGT--GGCAGTAAATGAAACACATTAATTTAAAATGTACAAGTGCACAG-GTGACCAAGACTCCTGCTGCTCCAAT i micMur3.chr7 C 0 I 344 s proCoq1.NW_012136747v1 5081213 103 - 6317780 TCCCCCCGCCCCCGGACCCCAGC-AGCAGCTAGT--GGCAGTAAATGAAACACGTTAATTTAAAACATATAAGTGCACAG-GTGACCAAGACTCCTGCTGCTCCAAT i proCoq1.NW_012136747v1 C 0 I 81 s otoGar3.GL873526 36293244 91 - 42659167 CTC-------------CCCCAGC-TGCAGCTAGT--GGCAACAAGTGAAATGTGTTAATTTAAAATCCACAAGTGCACAGTATGACCAAGACTCCTGCTGCTCCGAT i otoGar3.GL873526 C 0 I 1 s mm10.chr15 82817746 94 + 104043685 CTC-------------CTCCAGCATGAAACAAGCATAGCAGTAAATAAAATGCATTAATTTAAAACCTACCAGCACATAGCATGACCAAGACTCCTGCAGCTCCAAT i mm10.chr15 C 0 C 0 s canFam3.chr10 46088951 93 - 69331447 -TT-------------CCCCTGCAAGCAAATAGCATGGCAGTAAATGAAATGTGTTAATTTAAAACCCACAAGTACATGGCGTGACCAAGGCTCCTGCTGCTCCAAT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 62908 93 + 1056298 CTC-------------CCCCA-CAAGCAAATAGCATGACTGTAAATGAAATGTGTTAATTTAAAACCCACAAGTACATAGTGTGACTGAGACGCCTGCTGCTCCAGT i dasNov3.JH570235 C 0 C 0 a score=17100.000000 s hg38.chr22_GL383582v2_alt 81864 1 + 162811 C s panTro5.chr22 28862212 1 + 37823149 C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41136830 1 + 50109623 C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3159110 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106655250 1 - 115148730 C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84271377 1 + 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87616387 1 - 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7108221 1 - 13098629 C i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4075008 1 - 4483953 C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24705055 1 + 33263144 C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13979214 1 - 14338769 C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 922441 1 + 1946073 C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1952920 1 - 2117846 C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8866798 1 - 16357246 C i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349949 1 - 1807191 C i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 29916 1 + 5963231 C i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82817840 1 + 104043685 C i mm10.chr15 C 0 C 0 s canFam3.chr10 46089044 1 - 69331447 C i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 63001 1 + 1056298 C i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36293335 1 - 42659167 I e proCoq1.NW_012136747v1 5081316 81 - 6317780 I e micMur3.chr7 5717649 344 + 108171978 I a score=1471391.000000 s hg38.chr22_GL383582v2_alt 81865 106 + 162811 TGCCAG-AGAGTTTATAAACAGCAGGAGCCAGACAACTGGAGCTCAGGGGATATGCTCTCTTCTTACCTGGGCTCTGGCAGCAAGCACTATGCTGGCT--TAGTCTCTA s panTro5.chr22 28862213 106 + 37823149 TGCCAG-AGAGTTTATAAACAGCAGGAGCCAGACAACTGGAGCTCAGGGGATATGCTCTCTTCTTACCTGGGCTCTGGCAGCAAGCACTATGCTGGCT--CAGTCTCTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41136831 106 + 50109623 TGCCAG-AGAGTTTATAAACAGCAGGAGCCAGACAACTGGAGCTCAGGGGATATGCTCTCTTCTTACCTGGGCTCTGGCAGCAAGCACTATGCTGGCT--CAGTCTCTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3159111 106 + 4464012 TGCCAG-AGAGTTTATAAACAGCAAGAGCCAGACAACTGGAGCTCAGGGGACATGCTCTCTTCTTACCTGGGCTCTGGCAGCAAGCACTATGCTGGCT--CAGTCTCTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106655251 106 - 115148730 TGCCAG-AGAGTTTATAAACAGCAGGAGCCAGACAACTGGAGCTCAGGGGACATGTTCTCTTCTTACCTGGGCTCTGGCAGCAAGCAGTATGCTGGCT--CAGTCTCTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84271378 106 + 92844088 TGCCAG-AGAGTTTATAAACAGCAGGAACCAGACAACTGGAGCTCAGGGGACATGCTCTCTTCTTACCTGGGCTCTGGCAGCAAGCACTATGCTGGCT--CAGTTTCTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87616388 106 - 96509753 TGCCAG-AGAGTTTATAAACAGCAGGAGCCAGACAACTGGAGCTCAGGGGACATGCTCTCTTCTTACCTGGGCTCTGGCAGCAAGCACTATGCTGGCT--CAGTTTCTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7108222 106 - 13098629 TGCCAA-AGAGTTTATAAACAGCAGGAGCCAGACAACTGGAGCTCAGGGGACATGCTCTCTTCTTACCTGGGCTCTGGCAGCAAGCACTATGCTGGCT--CAGTTTCTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4075009 106 - 4483953 TGCCAG-AGAGTTTATAAACAGCAGGAGCCAGACAACTGGAGCTCAGGGGACATGCTCTCTTCTTACCTGGGCTCTGGCAGCAAGCACTATGCTGGCT--CAGTTTCTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24705056 106 + 33263144 TGCCAG-AGAGTTTATAAACAGCAGGAGCGAGACAACTGGAGCTCAGGGGACATGCTCTCTTCTTACCTGGGCTCTGGCAGCAAGCACTATGCTGGCT--CAGTTTCTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13979215 106 - 14338769 TGCCAG-AGAGTTTATAAACAGCAGGAGCCAGACAACTGGAGCTCAGGGGACATGCTCTCTTCTTACCTGGGCTCTGGCAGCAAGCACTATGCTGGCT--CAGTTTCTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 922442 106 + 1946073 TGCCTG-AGAGTTTATAAACAGCAGGAGCCAGACAACTGGAGCTCAGGGGACATGTTCTCTTCTTACCTGGGCTCTGGCAGCAAGCACTATGCTGGCT--CAGTCTCTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1952921 106 - 2117846 TGCCAG-AGAGTTTATAAACAGCAGGAGCCAGACAACTGGAGCTCAGGGGACATGCTCTCTCCTTACCTGGGCTCCGGCAGCAAGCACTATGCTGGCT--CAGTCTCTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8866799 106 - 16357246 TGCCAG-AGAGTTTATAAACAGTGGGAGCCAGACAACGGGAGCTCGGGGGACATGCTCTTTTCTTACCTGGGCTCCGGCAGCAAGCACTATGCTGGCT--CAGTCTCTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1349950 106 - 1807191 TGCCAG-AGAGTTTATAAACAGCGGGAGCCAGACAACTGGAGCTCAGGGGACATGCTCTCTTCTTACCTGGGCTCCAGCAGCAAGCACTATGCTGGCT--CAGTCTCTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 29917 106 + 5963231 TGCCAG-AGAGTTTATAAACAGCAGGAGCCAGACAACTGGAGCTCAGGGGACATGCTCTCTTCTTACCTGGGCTCCGGCAGCAAGCACTATGCTGGCT--CAGTCTCTA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36293336 85 - 42659167 TGCCAG-AGTGTCTATGAGCAGCAGGACACAGACAACTGGAGCTCAAGGGAAGCACATCCCCCCTCCCTGGGCTTAGGCAGCA---------CTG-------------- i otoGar3.GL873526 I 1 C 0 s mm10.chr15 82817841 96 + 104043685 TGCCAG-TGAG---ATTAACAGCAGGAGACAGACAACTGGAACTCATGGAA-GCACTCTCTGCTCACCTGAGCTCCAGCAGCT----CTGTACCA--C--CAGTCTCTA i mm10.chr15 C 0 C 0 s canFam3.chr10 46089045 102 - 69331447 TGCCAG-AGAGCTTATGAACAGCAGGAGACAGACAGCTGGAACTCAAGGGAGGCACTTTCTCCTTACCTGGGCTTTGGCAGCA------CTGCTTGCTGGCAGTCTCTA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 63002 105 + 1056298 TGCCAGAAGAGGTTACGAACAGCGGGAGACACACAACTGGAGCTTGAGGGATGCACGTTCTCCTCACCTGGGTTTTGGCAGCA-CCACT-TGCTAGCA--GGGTCTCTA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5081316 81 - 6317780 I e micMur3.chr7 5717649 344 + 108171978 I a score=3223190.000000 s hg38.chr22_GL383582v2_alt 81971 260 + 162811 GTTTGGGCCAAACAGAAACAGTACAGCACACGTGGGGCTGGGCCACGCTTACGCCACAGGGGTTTAT---ACCAGTGAGGACAGGGACCACACGAGCAGCAAAGGGTGCCATCAGAAAGGCGCAGGTGGCTCAGTT-C-CCTCACGGCCACAGAACAG--TGACCAGCTGTGATGGACCATTAATAAAACA-CGCCTCATGTTAGGAAAT-GCGT----TCCCTCTGAGTT-AGAAGCAGAAAAGA-GTAAGACA-------CTATGAATGCACGCTAACGA s panTro5.chr22 28862319 260 + 37823149 GTTTGGGCCAAACAGAAACAGTACAGCACACGTGGGGCTGGGCCACGCTTACGCCACAGGGGTTTAT---ACCAGTGAGGACGGGGACCACACGAGCAGCAAAGGGTGCCATCAGAAAGGCGCAGGTGGCTCAGTT-C-CCTCACGGCCACAGAACAG--TGACCAGCTGTGATGGACCATTAATAAAACA-CGCCTCATGTTAGGAAAT-GCGT----TCCCTCTGAGTT-AGAAGCAGAAAAGA-GTAAGACA-------CTATGAATGCACGCTAACGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41136937 260 + 50109623 GTTTGGGCCCAACAGAAACAGTACAGCACACGTGGGGCTGGGCCACGCTTACGCCACAGGGGTTTAT---ACCAGTGAGGACAGGGACCACACGAGCAGCAAAGGGTGCCATCAGAAAGGCGCAGGTGGCTCAGTT-C-CCTCACGGCCACAGAACAG--TGACCAGCTGTGATGGACCATTAATAAAACA-CGCCTCATGTTAGGAAAT-GCGT----TCCCTCTGAGTT-AGAAGCAGAAAAGA-GTAAGACA-------CTATGAATGCACGCTAACGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3159217 260 + 4464012 GTTTGGGCCAAATAGAAACAGTACAGCACACGTGGGGCTGGGCCACGCTTACGCCACAGGGGTTTAT---ACCAGTGAGGATGGGGACCACACAAGCAGCAAAGGGTGCCATCAGAAAGGCGCAGGCGGCTCAGTT-C-CCTCACGGCCACAGAACAG--TGACCAGCTGTGATGGACCATTAATAAAACA-CGCCTCATGTTAGGAAAT-GCAT----TCCCTCTGAGTT-AGAAGCAGAAAAGA-GTAAGACA-------CTATGAATGCACGCTAACGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106655357 260 - 115148730 GTTTGGGCCAAACAGAAACAGTACAGCACACGTGGGGCTGGGCCACGCTTACGCCACAGGGGTTTAT---ACCAATGAGGATGGGGACCACATGAGCAGCAAAGGGTGCCATCAGAAAGGCACAGGTGGCTCAGTT-C-CCTCGTGGCCACGTAACAG--TGACCAGCTGTGATGGACCATTAATAAAACA-CGCCTCATGTTAGGAAAT-GCGT----TCCCTCTGAGTT-AGAAGCAGAAAAGA-GTAAGACA-------CTATGAGTGCACGCTAACGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84271484 249 + 92844088 GTTTGGGCCAAACAGAAACAGTACAGCACAGGTGGGGCTTGGCCATGCTTATGCCACAGGGGTTTAT---ACAAATGAGGATGGGGACCACACAAGCAGCAAAGGGTGCCATTAGAAAGGCACAGGTGGCTCAGTT-C-CCTCATGGCCACGGAACAG--TGACCAGCTGTGATGGACCGTTAATAAAGCA-CGCCTCATGTTAGGAACT-GT---------------GTT-AGAAGCAGAAAAGA-GTAAGACA-------CTATGAGTGCACACTAAAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87616494 249 - 96509753 GTTTGGGCCAAACAGAAACAGTACAGCACAGGTGGGGCTTGGCCATGCTTATGCCACAGGGGTTTAT---ACAAATGAGGATGGGGACCACACAAGCAGCAAAGGGTGCCATCAGAAAGGCACAGGTGGCTCAGTT-C-CCTCATGGCCACGGAACAG--TGACCAGCTGTGATGGACCGTTAATAAAGCA-CGCCTCATGTTAGGAACT-GT---------------GTT-AGAAGCAGAAAAGA-GTAAGACA-------CTATGAGTGCACACTAAAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7108328 249 - 13098629 GTTTGGGCCAAACAGAAACAGTACAGCACAGGTGGGGCTTGGCCATGCTTATGCCACAGGGGTTTAT---ACAAATGAGGATGGGGACCACACAAGCAGCAAAGGGTGCCATCAGAAAGGCACAGGTGGCTCAGTT-C-CCTCATGGCCACGGAACAG--TGACCAGCTGTGATGGACCGTTAATAAAGCA-CGCCTCATGTTAGGAACT-GT---------------GTT-AGAAGCAGAAAAGA-GTAAGACA-------CTATGAGTGCACACTACAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4075115 249 - 4483953 GTTTGGGCCAAACAGAAACAGTACAGCACACGTGGGGCTTGGCCATGCTTATGCCACAGGGGTTTAT---ACAAATGAGGATGGGGACCACACAAGCAGCAAAGGGTGCCATCAGAAAGGCACAGGTGGCTCAGTT-C-CCTCATGGCCACGGAACAG--TGACCAGCTGTGATGGACCGTTAATAAAGCA-CGCCTCATGTTAGGAACT-GT---------------GTT-AGAAGCAGAAAAGA-GTAAAACA-------CTATGAGTGCACACTAAAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24705162 260 + 33263144 GTTTGGGCCAAACAGAAACAGTACAGCACACGTGGGGCTTGGCCATGCTTATGCCACAGGGGTTTAT---ACAAATGAGGATGGGGACCACACAAGCAGCAAAGGGTGCCATGAGAAAGGCACCAGTGGCTCAGTT-C-CCTCATGGCCACGGAACAG--TGACCAGCTGTGATGGACTGTTAATAAAGCA-CGCCTCATGTTAGGAACT-GTGT----TCCCTCTGAGTT-AGAAGCAGAAAAGA-GTAAGACA-------CTATGAGTGCACACTAAAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13979321 249 - 14338769 GTTTGGGCCAAATAGAAACAGTACAGCACACGTGGGGCTTGGCCATGCTTATGCCACAGGGGTTTAC---ACAAATGAGGATGGGGACCACACAAGCAGCAAAGGGTGCCATCAGAAAGGCACAGGTGGCTCAGTT-C-CCTCATGGCCACGGAACAG--TGACCAGCTGTGATGGACCGTTAATAAAGCA-TGCCTCATGTTAGGAACT-GT---------------GTT-AGAAGCAGAAAAGA-GTAAAACA-------CTATGAGTGCACACTAAAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 922548 260 + 1946073 GTTTGGGCCAAACAGAAACAGTACAGCACACGTGGGGCTTGGCCATGCTTATGCCACAGGGGTTTAT---ACAAATGAGGATGGGGACCACACAAGCAGCAAACGGTGCCATCAGAAAGGCACAGGTGGCTCAGTT-C-CCTCATGGCCACGGAACAG--TGACCAGCTGTGATGGACCATCAATAAAACA-CGCCTCATGTTAGGAAAT-GTGT----TCCCTCTGAGTT-AGAAGCAGACAAGA-GTAAGATA-------CTATGAGTGCACACTAAAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1953027 258 - 2117846 GTTTGAGCCAAACAGAAACAGTACAGCACATGTTGTTAT-GGCCACGCTTATGCCACAGGGGTTTAT---ACAAATGAGGAT-GGGACCACATGAGTGGCAAAGGGTGCTATCAGGAAGGCGCAGGTGGCTCAGTT-T-CCTCACAGCCATGGAACAG--TGACTAGCTGTGACGGACCATTAATAAAACA-CGCCTAATGTTAGGAAAT-GAGT----TCCCTCTGAGTT-AGAAGCAGAAACGA-ATAAGACA-------CTGTAAGTGCACGCTAAAGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8866905 258 - 16357246 GTTTGAGCCAAACAGACACAGTACAGCACATGTTGTTAT-GGCCACGCTTATGCCACAGGGGTTTAT---ACAAATGAGGAT-GGGACCACATGAGTGGCAAAGGGTGCTATCAGAAAGGCGCAGGTGGCTCAGCT-T-CCTCACAGCCACGGAACAG--TGACTAGCTGTGACAGACCATTAATAAAACA-GGCCTAATGTTAGGAAAT-GGGT----TCCCTGTGAGTT-AGAAGCAGAAACCA-GTAAGACA-------CTGTAAGTGTACACTAAAGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1350056 259 - 1807191 GTTTGAGCCAAAGAGACACAGTACAGCACATGTTGTTAT-GGCCACGCTTATGCCACCGGGGTTTAT---ACAAATGAGGATGGGGACCACATGAGTGGCAAAGGGTGCTATCAGAAAGGCGCAGGTGGCTCAGCT-T-CCTCACAGCCATGGAACAG--TGACTAGCTGTGATGGACCATTAATAAAACA-CGCCTAATGTTAGGAAAT-AGGT----TCCCTCTGAGTT-AGAAGCAGAAACCA-GTAAGACA-------CTATAAGTGCACACTAAAGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 30023 253 + 5963231 GTTTGAGGCCA------ACAGTACAGCACATGTTGTTAT-GGCCACGCTTATGCCACAGGGGTTTAT---ACAAATGAGGATGGGGACCACATGAGTGGCAAAGGGTGCTATCAGAAAGGCGCAGGTGGCTCAGTT-T-CCTCACAGCCATGGAACAG--TGACTAGCTGAGACGGACCATTAATAAAACA-CGCCTAATGTTAGGAAAT-GGGT----TCCCTCTGAGTT-AGAAGCAGAAACGA-GTAAGACA-------CTGTAAGTGCACGCTAAAGA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5081397 261 - 6317780 GTCTGGGCCAAAGAGAAACAATAGTGCACGTGTGGGGCTCGGCTATGCTTATGCCACA-CGGTTTAT---ACATAGGAGAACAAGGACCATGTGAGTGGCCAAGGGTGCCACTGGAAAGGCACAGATGGCTCAGTT-CCCCTCATAGCCATGGAACAG--TGACCAGCTGTGACAGACCATTAGTAAAATA-CATCTAAAGTTAGGAAAC-GTAT----TCCCTCTGAGTT-AAAAGCAGAAAAGATGTAAAACA-------ATTTGAGTATTAACTTAAGG i proCoq1.NW_012136747v1 I 81 C 0 s otoGar3.GL873526 36293421 259 - 42659167 TTCTGGGCCAAAGAGAAACAACACAGCACATGTGGGATGACACCATGCCCATGCCACA-GGGTTTAT---ATAAAGAAGGGCAGGGACCACATGAGTGACCAA----------GGAAAGGCATAAGTGGCTCAGTT-CTCCTGATAGCCACTAAACAG--TGACCAGTTATGACAGACCATTAGCAAAACA-CATCTAAAGTTAGGAAACTGTGT----TCCCTCCAAGTT-GAAAGCAGAAAAGATGTAAAATGTTAATGTAAATAAGTACCAACTAAAGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82817937 231 + 104043685 ----GGCCCAGTCAAACATGGC------CCTGTGAAGCTTGGCCACCATAATGCCACA-AGGTTTACAAAACCACCAGTTATAGGGACT------GTTGCAAAAGACACCATCAGAAAGACACATTTGCTT----G-T-CCTCAGAG--ACAAAACAGTATGACCAGTTGTGACAGTCCATTAATAAAATGTTTCCTAAAGTTAGAAAAT-GCTT----TTTCTGAGAGAA-AAAAAAAGTCACAA-ATAAAACA-------ATGTGAGT------------ i mm10.chr15 C 0 C 0 s canFam3.chr10 46089147 264 - 69331447 GTCTGGGCCAG--AGAAACAGCATAGCCCCTGTGGGACTCGGCCACCTTTGTGCCACAGGGGTTTAG---AGAAATGAGGAAGGGGACCGTATGAGCTGGAAAAGGTGCCATCAGAAAGGGAGTGGCGGCTCAGCTGC-CCTCCCAGCCATGGAG-AG--TCACCAGCTGTGACAGACCATTAGTAAAGCA-TGTCTGAAGTTAGGAAAC-ATGTTCCCTCCCTCTAAGTTAAAAAGCAGAAAAGAAATAAGACA-------ATGTAAGTACACATTGAAGG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 63107 228 + 1056298 GCTT-------------ATGTTACAATACATGCGGGGCCTGGCCAACCTCATACTACAGGACTTTAC---AGAAATGAGACT-GGGAGCACAGGAGTGGCAAAGGGCTCTATTAG------------------TTC-C-CCTCAAAG-CACCAAACAG--TGACCAGCTGTGATGGACCATTAATAAAATA-CCTCTAAAGTTGTGAAAC-ACCT----TCCCTCTAAGTA-TAAAGCAGAAAAGAGATAAAACA-------GTACATGTATATGCTAAAGG i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5717649 344 + 108171978 I a score=3275889.000000 s hg38.chr22_GL383582v2_alt 82231 227 + 162811 CAACTTGAAACTAATGCCAGATACATCTGGAAAT-GAAGTCTCCTA----------------------------------------------CAGCAATCT--GCCTGAGGCAGTGTCC----------------------------------------------ATCTCTGACAAGGCC---------TCCCATGCAG------GAACACTGTG----------------------------------------------------CAGAC-A-ATGCC-CTCCTCTGTTCTCATACATGTCCACAGGCCGTCAGGAAGCAC--AATTCACGTT-CCTGGCAGGGGCCAGAACCACAGCTAGAGAGCTCAGAAACCT-G-GAGG-GCACAGGGGAGC s panTro5.chr22 28862579 227 + 37823149 CAACTTGAAACTAATGCCAGATACATGTGGAAAT-GAAGTCTCCTA----------------------------------------------CAGCAATCT--GCCTGAGGCAGTGTCC----------------------------------------------ATCTCTGACAAGGCC---------TCCCATGCAG------GAACACTGTG----------------------------------------------------CAGAC-A-ATGCC-CTCCTCTGTTCTCATACATGTCCACAGGCCGTCAGGAAGCAC--AATTCATGTT-CCTGGCAGGGGCCAGAACCACAGCTAGAGAGGTCAGAAACCT-G-GAGG-GCACAGGGGAGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41137197 227 + 50109623 CAACTTGAAACTAATGCCAGATACATCTGGAAAT-GAAGTCTCCTA----------------------------------------------CAGCAATCG--GCCTGAGGCAGTGTCC----------------------------------------------ATCTCTGACAAGGCC---------TCCCATGCAG------GAACACTGTG----------------------------------------------------CAGAC-A-ATGCC-CTCCTCTGTTCTCATACATGTCCACAGGCCGTCAGGAAGCAC--AATTCATGTT-CCTGGCAGGGGCCAGAACCACAGCTAGAGAGGTCAGAAACCT-G-GAGG-GCACAGGGGAGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3159477 227 + 4464012 CAACTTGAAACTAATGCCAGATACATCTGGAAAT-GAAGTCTCCTA----------------------------------------------CAGCAATCT--GCCTGAGGCAGTGTCC----------------------------------------------ATCTCTGACAAGGCC---------TCCCATGCAG------GAACACTGTG----------------------------------------------------CAGAC-A-ATGCC-CTCCTCTGTTCTCATACATGTCCACAGGCCATCAGGAAGCAT--AATTCATGCT-CCTGGCAGGGGCCAGAACCACAGCTAGAGAGCTCAGAAACCT-G-GAGG-GCACAGGGGAGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106655617 229 - 115148730 CAACTTGAAACTAATGCTAGACACATCTGGAAAC-GAAGTCTCCTA----------------------------------------------CAGCAATCTGCGCCTGAGGCAGTGTCC----------------------------------------------ATCTCTGACAAGGCC---------TCCCATGCAG------GAACACTATG----------------------------------------------------CAGAC-A-ATGCC-CTCCTCTGTTCTCATACATGTCCACAGGCCGTCAGGAAGCGC--AATTCATGTT-CCTGGCAGGGGCCAGAACCACAGCTAGAGAGCTCAGAAACCT-G-GAGG-GCACAGGGGAGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84271733 229 + 92844088 CAACTTGAGACTAATGCCAGATACATCTGGAAAC-GACGTCTCCTA----------------------------------------------TAGCAATCT--GCCTAAGGCAGTGTCC----------------------------------------------ATCTCTGACAAGGCC---------TCCCATGCAG------GAACACTGTG----------------------------------------------------CAGAC-A-ATGCC-CTACTCTGTTCTCATACATGTCCACAAGCCGTCAGGAAGAGCAAAATTCCTGTT-CCTGGCAGGGGCCAGAACCACAGCTAGAGAGCTCAGAAACCT-G-GAGG-GCACAGGGGAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87616743 229 - 96509753 CAACTTGAGACTAATGCCAGATACATCTGGAAAC-GAAGTCTCCTA----------------------------------------------TAGCAATCT--GCCTAAGGCAGTGTCC----------------------------------------------ATCTCTGACAAGGCC---------TCCCATGCAG------GAACACTGTG----------------------------------------------------CAGAC-A-ATGCC-CTACTCTGTTCTCATACATGTCCACAAGCCGTCAGGAAGAGCAAAATTCCTGTT-CCTGGCAGGGGCCAGAACCACAGCTAGAGAGCTCAGAAACCT-G-GAGG-GCACAGGGGAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7108577 229 - 13098629 CAACTTGAGACTAATGCCAGATACATCTGGAAAC-GAAGTCTCCTA----------------------------------------------TAGCAATCT--GCCTAAGGCAGTGTCC----------------------------------------------ATCTCTGACAAGGCC---------TCCCATGCAG------GAACACTGTG----------------------------------------------------CAGAC-A-ATGCC-CTACTCTGTTCTCATACATGTCCACAAGCCGTCAGGAAGAGCAAAATTCCTGTT-CCTGGCAGGGGCCAGAACCACAGCTAGAGAGCTCAGAAACCT-G-GAGG-GCACAGGGGAGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4075364 229 - 4483953 CAACTTGAGACTAATGCCAGATACATCTGGAAAC-GAAGTCTCCTA----------------------------------------------TAGCAATCT--GCCTAAGGCAGTGTCC----------------------------------------------ATCTCTGACAAGGCC---------TCCCATGCAG------GAACACTGTG----------------------------------------------------CAGAC-A-ATGCC-CTACTCTATTCTCATACATGTCCACAAGCCGTCAGGAAGAGCAAAATTCCTGTT-CCTGGCAGGGGCCAGAACCACAGCTAGAGAGCTCAGAAACCT-G-GAGG-GCACAGGGGAGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24705422 229 + 33263144 CAACTTGAGACTAATGCCAGATACATCTGGAAAC-GAAGTCTCCTA----------------------------------------------CAGCAATCT--GCCTAAGGCAGTGTCC----------------------------------------------ATCTCTGACAAGGCC---------TCCCATGCAG------GAACACTGTG----------------------------------------------------CAGAC-A-ATGCC-CTACTCTGTTCTCATACATGTCCACAAGCCGTCAGGAAGAGCAAAATTCCTGTT-CCTGGCAGGGGCCAGAACCACAGCTAGAGAGCTCAGAAACCT-G-GAGG-GCACAGGGGAGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13979570 229 - 14338769 CAACTTGAGACTAATGCCAGATACATCTGGAAAC-GAAGTCTCCTA----------------------------------------------TAGCAATCT--GCCTAAGGCAGTGTCC----------------------------------------------ATCTCTGACAAGGCC---------TCCCATGCAG------GAACACTGTG----------------------------------------------------CAGAC-A-ATGCC-CTACTCTGTTCTCATACATGTCCACAAGCCGTCAGGAAGAGCAAAATTCCTGTT-CCTGGCAGGGGCCAGAACCACAGCTAGAGAGCTCAGAAACCT-G-GAGG-GCACAGGGGAGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 922808 228 + 1946073 CAACTTGAAACTAATGCCAGATACATCTGGAAAC-GAAGTCTCCTA----------------------------------------------CAGCAATCT--GCCTGAGGCAGTGTCC----------------------------------------------ATCTCTGACAAGGCC---------TCCCATGCAG------GAACACTGTG----------------------------------------------------CAGAC-A-ATGCC-CTACTCTGTTCTCATACATGTCCACAAGCCGTCAGGAAGTGC--AATTCCTGTT-CCTGGCAGGGGCCAGAACCACAGCTAGAGAGCTCAGAAACTTGG-GAGG-GCACAGGGGAGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1953285 227 - 2117846 CAACTTGAAACTAATGCTAGATACATCTGGAAACAGAAGTCTCCTA----------------------------------------------CAGCAATCT--GCCCGAGACAGTGTCC----------------------------------------------ATCTTTGACAAGGCC---------TCCCATGCAG------GAACACTCTG----------------------------------------------------CAGAC-A-ATGCC-CCCCTCTGTTCTCATACATGTCCACAGGCCGTCTGGAACTGC--AATTCAGGTT--TTGGCAGGGGCCAGAACCACAGCTAGAAAGCTCAGAAACCT-G-GAGG-GCACAGGGGAGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8867163 227 - 16357246 CAACTTGAAACTAGTGCTAGATACATCTGGAAATGGAAGTCTCCTA----------------------------------------------AAGCAATCT--GCCTGAGGCAGTGTCC----------------------------------------------ATCTTTGACAAGGCC---------TCCCATGCAG------GAACACTGTG----------------------------------------------------CAGAC-A-ATGTC-CCCTTCTGTTCTCATACACGTCCACAGACCATCAGGAACCGC--AATTCAGGTT--TTGGCAGGGGCCAGAACCATAGCTAGAAAGCTCAGAAACCT-G-GAGG-TCATGGGGGAGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1350315 227 - 1807191 CAACTTGAAACTAATGCTAGATACATCTGGAAATGGAAGTCTCCTA----------------------------------------------AAGCAATCT--GCCTGAGGCAGTGTCC----------------------------------------------ATCTTTGACAAGGCC---------TCCCATGCAC------GAACACTGTG----------------------------------------------------CAGAC-A-ATGTC-CCCTTCTGTTCTCATACATGTCCACAGGCCGTCAGGAACTGC--AATTCAGGTT--TTGGCAGGGGCCAGAACCATAGCTAGAAAGCTCAGAAACCT-G-GAGG-GCACACGGGAGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 30276 227 + 5963231 CAACTTGAAACTAATGTTAGATACATCTGGAAACGGAAGTCTCCTA----------------------------------------------AAGCAATCT--GCTCGAGGCAGTGTCC----------------------------------------------ATCTTTGACAAGGCC---------TCCCATGCAG------GAACACCGTG----------------------------------------------------CAGAC-A-ATGCC-CTCTTCTGTTCTCATACATGTCCACAGGCCGTCAGGAACCAC--AATTCAGGTT--TTGGCAGGGGCCAGAACCATAGCTAAAAAGCTCAGAAACCT-G-GAGG-GCGCAGGGGAGC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5717993 230 + 108171978 CAACTTGGAACTAGTGCCAGGTACTTCTGGAAATGGAAGTCTCCTA----------------------------------------------AAGGAATCT--GCCAGAGACAGCATCC----------------------------------------------ACCTTTGGCAAGGCC---------TCCTGTGCAA------GAACACTGTG----------------------------------------------------CAGACAA-ATGCT-CTCGTCTGTTCTTGGATATATCCATAGACCATCAAGAACTGC--ACTTCATAAT-CCTGACAGGGGTCAGAACCACAGCAAGAGAGCTTAGAAACCT-A-CAAGGGCACAGGGGAGC i micMur3.chr7 I 344 I 149 s proCoq1.NW_012136747v1 5081658 230 - 6317780 CAACTTGGAACTAGTGCCAGGTACTTCTGGAAATGGAAGTCTCCTA----------------------------------------------AAGGAATCT--GCCAGAGACAGCGTCC----------------------------------------------ACCTTTGGCAGGGCC---------TCCTGTGCAG------GAACACTGTG----------------------------------------------------CAGACAA-ATGCT-CTTGTCTATTGTTGGATATATCCACAGCCCGTCAAGAACTGC--AATTCACAAT-CCTGGCAGGGGTCAGAACCACAGCCAGAGCGCTCAGAAACCT-A-GAAGGGCACAGGGGAGC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36293680 221 - 42659167 GCCCGTGGAACTAGTACCAGGTACTTCTGGAAATGGAAGTCTCCTA----------------------------------------------AAGGAATCT--GCCAGAGACAGTATCC----------------------------------------------ACCTTTGGCAAGCCC---------T-CTGTGCAG------G-ACACTGTG----------------------------------------------------CAGGCAA-ATGCT-CTTTTCTGTTCTTTAATA----CACAGGCCTTTAAGAACTGC--AATTCAAGTT-TCTGGCACGTGATGGAACCACAGCTAGAGAGCTGAGACAACT-G-GAGG---ACAGGGAAGC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82818168 368 + 104043685 ---------ATTATT-------ACTTCTGGAGAT-GAAATCTCCTAAAAAAGTCTTACAGAATGTGCCCACATCTGTACTTTCAGCAgaactcagaaatcc--gcctgcctctgcctcccgagtgctgggattaaaggcgtgcaccaccaccgcccgctcaggtagtttttaaagaggttctgCATTGGTCCTGTGGAGTTAGCTGAACACTCTGTTGGAAATTAACTTTGACAGTTACTATTGTACTGTGTATTTCAGCACATTAACAGAC-A-ATTCCTCTTTTCTATTCTCATACAAATCGTCGAATCATCAGGAACTGT--AATTTCATTT--TTAGCATAAGTCAGGA-CATAGGCAGAAGACTCACAAG-CT-A-GGGG-CTACAGGGAGAT i mm10.chr15 C 0 C 0 s canFam3.chr10 46089411 224 - 69331447 CAAC-TGGAGCTAATGTCAGGTACTTCTGGGAATGGAAGCCTCCTG----------------------------------------------AACAAATCT--GCTAGTGACCATGTCC----------------------------------------------ACCTTTGGTGATGCC---------TCCCATGCAG---------CAAGGGG----------------------------------------------------CAGATAA-ATGCT-CTCATTTGTCCTCATA-ATAGCCATAGGCCATCAGGAGCTAC--AATTCACGCT-CCTGGCAGGGACCAGAACGGCGGCCAGAGAGCTCAGCCACAC-GCAAGG-GCAC-GGGGAGC i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 63335 226 + 1056298 CAACTTTGAATGAATGACA--CAATTCTGGAGAC-AGATGCTCCTA----------------------------------------------AATAAACCT--GCCAGATGC--TGTCC----------------------------------------------ACCTTTGGCAATGCC---------TCCCATGCAG------GAGCACTGTG----------------------------------------------------CAGAC-ACGTGCT-CTCATCTGTTCTCGTACATACCTACAGGCCACCCAGAACTGC--CATTCATTCCCCTTAGCAGGGGTCAGACCCACTGCTAGAGAGCTCAGGAACCT-G-GAAGGGCACAGGGAGGC i dasNov3.JH570235 C 0 C 0 a score=1823324.000000 s hg38.chr22_GL383582v2_alt 82458 170 + 162811 TTCT------CCTCT--------TACCAGTCCCTGCTGG-GAGGGAAGAGTGAAGAGCAGTA---GGTGT----AGT-AAAACCTCTTCTGAGGACTCTGAACAGGCAA-----CT-GCACCTACATGGCCAGCCAGTCAAGGTCTCTCA--ATCT-GTGTTCT-TCAAGGCCCAGGCACCATCCTACACTGTCCAGAGGGCG s panTro5.chr22 28862806 170 + 37823149 TTCT------CCTCT--------GACCAGTCCCTGCTGG-GAGGGAAGAGTGAAGAGCAGTA---GGTGT----AGT-AAAACCTCTTCTGAGGACTCTGAACAGGCAA-----CT-GCACCTACATGGCCAGCCAGTCAAGGTCTCTCA--ATCT-GTGTTCT-TCAAGGCCCAGGCACCATCCTACACTGTCCAGAGGGCG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41137424 170 + 50109623 TTCT------CCTCT--------GACCAGTCCTTGCTGG-GAGGGAAGAGTGAAGAGCAGTA---GGTGT----AGT-AAAACCTCTTCTGAGGACTCTGAACAGGCAA-----CT-GCACCTACGTGGCCAGCCAGTCAAGGTCTCTCA--ATCT-GTGTTCT-TCAAGGCCCAGGCACCATCCTACACTGTCCAGAGGGCG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3159704 170 + 4464012 TTCT------CCTCT--------GACCAGTCCCTGCTGG-GAGGGAAGAGTGAAGAGCAGTA---GGTGT----AGT-AAAACCTCTTCTGAGGACTCTGAACAGGCAA-----CT-GCACCTACATGGCCAGCCAGTCAAGGTCTCTCA--ATCT-GTGTTCT-TCAAGGCCCAGGCACCATCCTACACTGTCCAGAGGGCG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106655846 167 - 115148730 TT---------CTCT--------GACCAGTCCCTGCTGG-GAGGGAAGAGTGAAGAGCAGTA---GGTAT----AGT-AAAACCTCTTCTGAGGACTCTGAACAGGCAA-----CT-GCACCTACATGGCCAGCCAGTCAAGGTCTCTCA--GTCT-GTGTTCT-TCAGGGCCCAGGCACCATCCGACACTGTCCAGAGGGCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84271962 169 + 92844088 TTCT------CCTCT--------GACCAGTCCCTGCTGG-GAGGGACAAGTGAAGAGCAGTA----GTGT----AGT-AAAACCTCTTCTGAGGATTCTGAACAGGCAA-----CT-GCACCTAGATGGCCAGCCAGTCAAGGTCTCTCA--ATCT-GTGTTCT-TCAAGGCCCAGGCACCATCCTACACTGTCCAGAGGGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87616972 169 - 96509753 TTCT------CCTCT--------GACCAGTCCCTGCTGG-GAGGGACAAGTGAAGAGCAGTA----GTAT----AGT-AAAACCTCTTCTGAGGATTCTGAACAGGCAA-----CT-GCACCTAGATGGCCAGCCAGTCAAGGACTCTCA--ATCT-GTGTTCT-TCAAGGCCCAGGCACCATCCTACACTGTCCAGAGGGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7108806 169 - 13098629 TTCT------CCTCT--------GACCAGTCCCTGCTGG-GAGGGACAAGTGAAGAGCAGTA----GTGT----AGT-AAAACCTCTTCTGAGGATTCTGAACAGGCAA-----CT-GCACCTAGATGGCCAGCCAGTCAAGGTCTCTCA--ATCT-GTGTTCT-TCAAGGCCCAGGCACCATCCTACACTGTCCAGAGGGCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4075593 169 - 4483953 TTCT------CCTCT--------GACCAGTCCCTGCTGG-GAGGGACAAGTGAAGAGCAGTA----GTGT----AGT-AAAACCTCTTCTGAGGATTCTGAACAGGCAA-----CT-GCACCTAGATGGCCAGCCAGTCAAGGTCTCTCA--ATCT-GTGTTCT-TCAAGGCCCAGGCACCATCCTACACTGTCCAGAGGGCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24705651 169 + 33263144 TTCT------CCTCT--------GACCAGTCCCTGCTGG-GAGGGACGAGTGAAGAGCAGTA----GTGT----AGT-AAAACCTCTTCTGAGGATTCTGAACAGGCAA-----CT-GCACCTAGATGGCCAGTCAGTCAAGGTCTCTCA--GTCT-GTGTTCT-TCAAGGCCCAGGCACCATCCTACACTGTCCAGAGGGCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13979799 169 - 14338769 TTCT------CCTCT--------GACCAGTCCCTGCTGG-GAGTGACAAATGAAGAGCAGTA----GTGT----AGT-AAAACCTCTTCTGAGGATTCTCAACAGGCAA-----CT-GCACCTAGATGGCCAGCCAGTCAAGGTCTCTCA--ATCT-GTATTCT-TCAAGGCCCAGGCACCATCCTACACTGTCCAGAGGGCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 923036 169 + 1946073 TTCT------CCTCT--------GACCAGTCCCTGCTGG-GAGGGATGAGTGAAGAGCAACA----GTGT----AGT-AAAACCTCTTCTGAGGATTCTGAACAGGCAA-----CT-GCACCTAGATGGCCAGCCAGTCAAGGTCTCTCA--ATCT-GTGTTCT-TCAAGGCCCAGGCACCATCCTACACTGTCCAGAGGGCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1953512 152 - 2117846 TT---------CTCT--------TACCAGTCCCTGCTGG-GAGGGAAGAGTGAAGAGCAGTA---GGTAT----AGT-AAAACCTCTTCTGAGCACTCTGAACAGGCGA-----CT-GCACCTACATGGCCAGCCAGTCTTGGTCTCTC-------------------AGGCCCAGGCACTGTCCTACACTGTCCAGAGGGCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8867390 167 - 16357246 TT---------CTCT--------TACCAGTCCCTGCTGG-GAGGGAAGAGTGAAGAGCAGTA---GGTAT----AGT-AAAACCTCTCCTGGGCACTCTGAACAGGCAA-----CT-GCACCTACATGGCCAGCCAGTCTTGGTCTTTCA--AGCT-CTGTTCT-TCAAGGCCCAGGCACTGTCCTACACTGTCCAGAGGGCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1350542 168 - 1807191 TT---------CTCT--------TACCAGTCCCTGCTGG-GAGGGAAGTGTGAAGAGCAGTA---GGTAT----AGT-AAAACCTCTTCTGAGCACTCTGAACAGGCAA-----CT-GCACCTACATGGCCAGCCAGTCTTGGTCTCTCA--ATCT-CTGTTCTCCCAAGGCCCAGGCACTGTCCTATACCGTCCAGAGGGCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 30503 167 + 5963231 TT---------CTCT--------TACCAGTCCCTGCTGG-GAGGGAAGAGTGAAGAGCAGTA---GGTAT----AGT-AAAACCTCTTCTGAGCACTCTGAACAGGCAA-----CT-GCACCTACATGGCCAGCCAGTCTTGCTCTCTCA--ATCT-CTGTTCT-TCAAAGCCCAGGCAGTGTCCTACACTGTCCAGAGGGCC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5081888 150 - 6317780 CTCT------TCTCC--------AACCAGTCCCAGCTAG-GGAGAA----TGAAGAGCAA--------GA----AGTGAGGACT-------------CTGAGCAGGCACCTGGCCC-CCACCGACAGGGCCAGCCACA----GTCTCTCA--GTTT-GTTTTCT-TTAAGGCCTAGGCACTGCCCTACGCCATCTGGAGGGCC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36293901 128 - 42659167 CTCT------TCTCC--------------TCCCCGCTGC-TGAG------TGAAGAGCACTATAAAGTGT----AGTCAAAACCTCTTCTGAGGA--CTGAACAGGTGT--------------ACATGGCCAGCCACCATCTATCTCTCA--GTCT-GTTTTCT-GTAAGGCC--------------CTCCAT---------- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82818536 173 + 104043685 ----------TCTCTATGGTATCAACCA--CCCTGGTGATGAGGTAAGGACAGAGAGTACAG---AGAATTCCAGGG-AAATCCCCACCTGAGGATTCTG-GCAGGTGC-----CTGGTCCCCACAT-GTCACCCAGTAACAATCACCTG--ATTT--TCTTTT-TCTAGGACCTAGAACTACCTTGCA--GTTCACATGGCC i mm10.chr15 C 0 C 0 s canFam3.chr10 46089638 170 - 69331447 TTCTTGGCTGCCTTG--------ATTCAGCCCCTGCTGC-GCAGG--GAGTGGAGGGTGGTGAGAGGCAC----GGT-GGGGCCCCTCCTGAGGTCTCTCAACAGGCGC-----CT-GC-CCAACACGGCCAGCCAGC------CTCTCA--ATTT-GTTCTCC-TTAAGCCCCTGGCAATATCCCACACTGGCCAGAGGGCC i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 63561 148 + 1056298 -TCTTGGCTGCCTTG--------AACCAGTCCCTGTTGG-G----------GAAGAGCTGTA---AGAAG----TGT-A-----------------CCCGAACAG---A-----CT-GCCTTGGAAAGGCCAGGCGCCTGATGCCTGCCATCGCCTAGTTTTTC-TTTAGTTCCTGGCACTATCCTACACTGTCCAGTGGGCC i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5718223 149 + 108171978 I a score=1749785.000000 s hg38.chr22_GL383582v2_alt 82628 118 + 162811 CAGTCAGCACTTCTGCATAGTGAAGTCAAAGTAAACAGCTTGCGAGATCAT--CATCCAAGCTCAAAAAGACCTACAAGGTGGCCTAGTCAACAAGATGGCTTGCAGACACAAACATCAA s panTro5.chr22 28862976 118 + 37823149 CAGTCAGCACTTCTGCATAGTGAAGTCAAAGTAAACAGCTTGCGAGATCAT--CATCCAAGCTCAAAAAGACCTACAAGGTGGCCTAGTCAACAAGATGGCTTGCAGACACGAACATCAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41137594 118 + 50109623 CAGTCAGCACTTCTGCATAGTGAAGTCAAAGTAAACAGCTTGCGAGATCAT--CATCCAAGCTCAAAAAGACCTACAAGGTGGCCTAGTCAACAAGATGGCTTGCAGACACGAACATCAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3159874 118 + 4464012 CAGTCAGCACTTCTGCATAGTGAAGTCAAAGTAAACAGCTTGCGAGATCAT--CATCCAAGCTCAAAAAGACCTACAAGGTGGCCTAGTCAACAAGATGGCTTGCAGACACAAACATCAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106656013 118 - 115148730 CAGTCAGCACTTCTGCATAGTGAAGTCGAAGTAAACAGCTTGCGAGATCAT--CATCCAAGCTCAAAAAGACCCACAAGGTGGCCTAGTCAACAAGATGGCTTGCAGACACAAACATCAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84272131 118 + 92844088 CAGGCAGCACTTCTGCATAGTGAAGTCAAAGTAAACAGCTTGTGAGATCAA--CATCCAAGCTCAAAAAGACCCACAAGGTGGCCTAGTCAACAAGATGGCTTGCAGACACAAACATCAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87617141 118 - 96509753 CAGACAGCACTTCTGCATAGTGAAGTCAAAGTAAACAGCTTGTGAGATCAA--CATCCAAGCTCAAAAAGACCCACAAGGTGGCCTAGTCAACAAGATGGCTTGCAGACACAAACATCAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7108975 118 - 13098629 CAGGCAGCACTTCTGCATAGTGAAGTCAAAGTAAACAGCTTGTGAGATCAA--CATCCAAGCTCAAAAAGACCCACAAGGTGGCCTAGTCAACAAGATGGCTTGCAGACACAAACATCAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4075762 117 - 4483953 CAGGCAGCACTTCTGCATAGTGAAGTCAAAGT-AACAGCTTGTGAGATCAA--CATCCATGCTCAAAAAGACCCACAAGGTGGCCTAGTCAACAAGATGGCTTGCAGACACAAACATCAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24705820 118 + 33263144 CAGACAGCACTTCTGCATAGTGAAGTCAAAGTAAACAGCTTGTGAGATCAA--CATCCAAGCTTAAAAAGACCCACAAGGTGGCCTAGTCAACAAGATGGCTTGCAGACATAAACATCAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13979968 118 - 14338769 CAGGCAGCACTTCTGCATAGTGAAGTCAAAGTAAACAGCTTGTGAGATCAA--CATCCAAGCTCAAAAAGACCCACAAGGTGGCCTAGTCAACAAGATGGCTTGCAGACACAAACATCAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 923205 118 + 1946073 CAGGCAGCACTTCTGCATAGTGAAGTCAAAGTAAACAGCTTGTGAGATTAA--CATCCAAGCTCAAAAAGACCCACAAGGTGGCCTAGTCAACAAGATGGCTTGCAGACACAAACATCAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1953664 118 - 2117846 CAGTCAGCACTTCTGCACAGTGAAGTCAAAGTAAACAGCTTGCAAGATCAT--CAGCCAAGCTCAGAAAGACCCACAAGGCGGCCTAGTCAACAAGATGGCTTGCAGACACAAACATCAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8867557 118 - 16357246 CAGTCAGCACTTCTGCACAGTGAAGTCAAAGTAAACAGCTTGCAAGATCAT--CATCCAAGCTCAGAAAGACCCACAAGGTGGCCTAGTCAACAAGATGGCTTGCAGACACAAACATCAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1350710 115 - 1807191 CAGTCAGCACTTCTGCACAGTGAAGTCAAAGTAAACAGCTTGCGAGATCAT-----CCAAGCTCAGAAAGACCCACGAGGTGGCCTAGTCAACAAGATGGCTTGCAGACACAAACATCAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 30670 118 + 5963231 CAGTCAGCACTTCTGCACAGTGAAGTCAAAGTGAACAGCTTGCGAGATCAT--CTTCCAAGCTCAGAAAGACCCACAAGGTGGTCTAGTCAACAAGATGGCTTGCAGACACAAACATCAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5718372 114 + 108171978 CAGTCAGTACTTCTGCATGGTGAGGTCAAAGTACACAGCTCACTGTATCAT--CAAGCAAGCTCTGAAAG----ACAAGTTGCCCTAGTCAACAAGAGGCCTTCCAGATATAAACATCAA i micMur3.chr7 I 149 C 0 s proCoq1.NW_012136747v1 5082038 114 - 6317780 CAGTCAGCACTTCTGCATGGTGAGGTCAAAGTAGACAGCTCACTGTATCAT--CAAGCAAGCTCTGAAAG----ACAAGGTGGCCTAGTCAACAAGAGGCCTTCCAGACACACACGTCAA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36294029 92 - 42659167 --GCCAGTACCTCTGCACAGTAGGGTCAAA-------------------AT--CAAGCAAGCTTGGAAAG----GCAAGG-GGTGTAGTCAATAAAAGGGCTTCCAGACACAAACGTCAG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82818709 80 + 104043685 TAGTCAAAATTCCCACATG----------------------------------------AGCTAGAAAAGACTCACAAAGTAGTCCAGTCAACAAAATGGCTTCCAGAAACGATTATCAC i mm10.chr15 C 0 C 0 s canFam3.chr10 46089808 120 - 69331447 TGGTCAGCACTTCCACACAGTGAAGTCAAAGTAAATGGCGTGCTGGATCATCACACACACACTGGGAAAGACTCACAAGGTTGTCTAGTCAACAAGATGGCTTCCAGACACAAATACCAA i canFam3.chr10 C 0 I 60 s dasNov3.JH570235 63709 88 + 1056298 TGGTCAACACTTTTGAATGATAAAGTCAAAGCAAACGGCTTGCTAGATCAT--TGCTCAAGCTGGAAAGG-----------GGTC-------------------CAGACACAGATACCAA i dasNov3.JH570235 C 0 C 0 a score=282960.000000 s hg38.chr22_GL383582v2_alt 82746 21 + 162811 C----------CCCCAGAAGAGAAGGCCACT s panTro5.chr22 28863094 21 + 37823149 C----------CCCCAGAAGAGAAGGCCACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41137712 21 + 50109623 C----------CCCCAGAAGAGAAGGCCACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3159992 21 + 4464012 C----------CCCCAGAAGAGAAGGCCACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106656131 22 - 115148730 C---------GCCCCAGAAGAGAAGGCCACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84272249 22 + 92844088 C---------CCCCTAGAAGAGAAGACCACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87617259 22 - 96509753 C---------CCCCTAGAAGAGAAGACCACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7109093 22 - 13098629 C---------CCCCTAGAAGAGAAGACCACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4075879 22 - 4483953 T---------CCCCTAGAAGAGAAGACCACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24705938 22 + 33263144 C---------CCCCTAGAAGAGAAGACCACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13980086 22 - 14338769 T---------CCCCTAGAAGAGAAGACCACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 923323 22 + 1946073 C---------CCCCTAGAAGAGAAGACCACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1953782 22 - 2117846 C---------ACCCTGGAAGAGAAGGCCACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8867675 22 - 16357246 C---------ACCCCAGAAGAGAAGGCCACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1350825 22 - 1807191 C---------ACCCCAGAAGAGAAGGCCACT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 30788 22 + 5963231 C---------ACCCTAGAAGAGAAGGCCACT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5718486 22 + 108171978 C---------CCCCAAGAAGAGAAGGCTACT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5082152 22 - 6317780 C---------ACCCCAGAAGAGAAGGCTACT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36294121 21 - 42659167 C----------CCTGAGAAGAGAAGGCTCTT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82818789 31 + 104043685 CTCCATACCAACCCTCGGAGAGAATGCTACT i mm10.chr15 C 0 C 0 s dasNov3.JH570235 63797 22 + 1056298 ---------TGCCCTGGAAGAGCACTCTACT i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46089928 60 - 69331447 I a score=19110.000000 s hg38.chr22_GL383582v2_alt 82767 1 + 162811 T s panTro5.chr22 28863115 1 + 37823149 T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41137733 1 + 50109623 T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3160013 1 + 4464012 T i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106656153 1 - 115148730 T i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84272271 1 + 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87617281 1 - 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7109115 1 - 13098629 T i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4075901 1 - 4483953 T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24705960 1 + 33263144 T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13980108 1 - 14338769 T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 923345 1 + 1946073 T i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1953804 1 - 2117846 T i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8867697 1 - 16357246 T i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1350847 1 - 1807191 T i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 30810 1 + 5963231 T i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5718508 1 + 108171978 T i micMur3.chr7 C 0 I 217 s proCoq1.NW_012136747v1 5082174 1 - 6317780 T i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82818820 1 + 104043685 T i mm10.chr15 C 0 C 0 s canFam3.chr10 46089988 1 - 69331447 t i canFam3.chr10 I 60 C 0 s dasNov3.JH570235 63819 1 + 1056298 T i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36294142 0 - 42659167 C a score=296688.000000 s hg38.chr22_GL383582v2_alt 82768 28 + 162811 TCATTTCCCTCT--TCAAGCTCAAAGGCAG s panTro5.chr22 28863116 28 + 37823149 TCATTTCCCTCT--TCAAGCTCAAAGGCAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41137734 28 + 50109623 TCATTTCCCTCT--TCAAGCTCAAAGGCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3160014 28 + 4464012 TCATTTCCCTCT--TTAAGCTCAAAGGCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106656154 28 - 115148730 TCATTTCCCTCT--TTAAGCTCAAAGGCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84272272 28 + 92844088 TCATTTCTCTCT--TTAAGCTCAAAGGCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87617282 28 - 96509753 TCATTTCTCTCT--TTAAGCTCAAAGGCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7109116 28 - 13098629 TCATTTCTCTCT--TTAAGCTCAAAGGCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4075902 28 - 4483953 TCATTTCTCTCT--TTAAGCTCAAAGGCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24705961 28 + 33263144 TCATTTCTCTCT--TTAAGCTCAAAGGCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13980109 28 - 14338769 TCATTTCTCTCT--TTAAGCTCAAAGGCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 923346 28 + 1946073 TCATTTCTCTCT--TTAAGCTCAAAGGCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1953805 28 - 2117846 TCATTTATCTCT--TTAAGCTCAAAGGCAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8867698 28 - 16357246 TCATTTATCTCT--TTAAGCTCAAAGGTAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1350848 28 - 1807191 TCATTCATCTCT--TTAAGCTCAAAGGCAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 30811 28 + 5963231 TGATTTATCTCT--TTAAGCTCAAAGGCAG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5082175 10 - 6317780 --------------------CCAAAGGCAG i proCoq1.NW_012136747v1 C 0 I 229 s otoGar3.GL873526 36294142 10 - 42659167 -------------------TCCAAAAGCA- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82818821 30 + 104043685 TCATTACCCTCTAAGCTTGCTTAAAGGCAA i mm10.chr15 C 0 I 1 s canFam3.chr10 46089989 28 - 69331447 ttgtttTCTACA--CTGAATTTAAATGCAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 63820 26 + 1056298 CCGGTCTTCCCT--TTAGGCTAGAAGGG-- i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5718509 217 + 108171978 I a score=2305872.000000 s hg38.chr22_GL383582v2_alt 82796 218 + 162811 AATGGA-TTTACTAAGCTCCTCATTATAAGCTCTGT-------GAAGCTT-CAGATACCCACATGCATCCACAT-GCTCCCAGGCT----GAGGATGGTGGGCTCAAGGAGGGAGGTAGGAAAAACAAGA-----AG-----GGTTTAA--TGTCCTTTGGATCTGTTGTGTAGCAGA-----CACAGACTCCAATTCACCTACACTCT-ACCCCAGTACTACTGTTATTCCTTATGTTGGC------ACACTGCA--- s panTro5.chr22 28863144 218 + 37823149 AATGAA-TTTACTGAGCTCCTCATTATAAGCTCTGT-------GAAGCTT-CAGATACCCACATGCATTCACAT-GCTCCGAGGCT----GAGGATGGTGGGCTCAAGGAGGGAGGTGGGAAAAACAAGA-----AG-----GGTTTAA--TGTCCTTTGGATCTGTTGTGTACCAGA-----CACAGACTCCAATTCACCTACACTCT-ACCCCAGTACTACTGTTATTCCTTATGTTGGC------ACATTGCA--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41137762 218 + 50109623 AATGAA-TTTACTGAGCTCCTCATTGTAAGCTCTGT-------GAAGCTT-CAGATACCCACATGCATTCACAT-GCTCCGAGGCT----GAGGATGGTGGGCTCAAGGAGGGAGGTGGGAAAAACAAGA-----AG-----GGTTTAA--TGTCCTTTGGATCTGTTGTGTACCAGA-----CACAGACTCCAATTCACCTACACTCT-ACCCCAGTACTACTGTTATTCCTTATGTTGGC------ACATTGCA--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3160042 215 + 4464012 AATGGA-TTTACTGAGCTCCTCATCATAAGCTCTGT-------GAAGCTT-CAGATACCCACATGCATCCACAT-GCTCCCAGGCT----GAGGATGGTGGGCTCAAGGAGGGAGGTGGGAAAAAT---A-----AG-----GGTTTAA--CATCCTTTGGATCTGTTGTGTACCAGA-----CACAGACTCCAATTCACCTACACTCT-ACCCCAGTACTACTGTTATTCCTTATGTTGGC------ACACTGCA--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106656182 218 - 115148730 AGTGGA-TTTACTGAGCTCCTCATTATAAGCTCTGT-------GAAGCTT-CAGATACCCACATGCATCCACAT-GCTCCCACACT----GAGGATGGTGGGCTCAAGGAGGGAGGTGGGAAAAACAAGA-----AG-----GGTTTAA--TGTCCTTTGGATCTGTTGTGTACCAGA-----CACAGACTCCAATTCACCTACACTCT-ACCCCAGTGCTACTGTTATTCCTTATTTTGGC------ACACTGCA--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84272300 217 + 92844088 GGTGGA-TTTACTGATCTCCTCATTATAAGCTCTGT-------GAAGCTT-CAGATACCCACATGCATCCACAT-GCTTCCAGGCT----GAGGATGGTGGGCTCAAGGAGGGAGGTGGGAAAAACAAGA-----AG-----GGTCTAA--TGTCCTTTGGATCTGCTGGGTACCAG-------ACAGACTCCAATTCACCTACGCTCTAACCCCAGTGTTACTATTATTCCTTATGTTGGC------ACATTGCA--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87617310 217 - 96509753 GGTGGA-TTTACTGATCTCCTCATTATAAGCTCTGT-------GAAGCTT-CAGATACCCACATGCATCCACAT-GCTTCCAGGCT----GAGGATGGTGGGCTCAAGGAGGGAGGTGGGAAAAACAAGA-----AG-----GGTCTAA--TGTCCTTTGGATCTGCTGGGTACCAG-------ACAGACTCCAATTCACCTACACTCTAACCCCAGTGTTACTATTATTCCTTATGTTGGC------ACATTGCA--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7109144 217 - 13098629 GGTGGA-TTTACTGATCTCCTCATTATAAGCTCTGT-------GAAGCTT-CAGATACCCACATGCATCCACAT-GCTTCCAGGCT----GAGGATGGTGGGCTCAAGGAGGGAGGTGGGAAAAACAAGA-----AG-----GGTCTAA--TGTCCTTTGGATCTGCTGGGTACCAG-------ACAGACTCCAATTCACCTACACTCTAACCCCAGTGTTACTATTATTCCTTATGTTGGC------ACATTGCA--- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4075930 219 - 4483953 GGTGGA-TTTACTGATCTCCTCATTATAAGCTCTGT-------GAAGCTT-CAGATACCCACATGCATCCACAT-GCTTCCAGGCT----GAGGATGGTGGGCTCAAGGAGGGAGGTGGGAAAAACAAGA-----AG-----GGTCTAA--TGTCCTTTGGATCTGCTGGGTACCAGA-----CACAGGCTCCAATTCACCTACACTCTAACCCCAGTGTTACTGTTATTCCTTATGTTGGC------ACATTGCA--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24705989 219 + 33263144 GGTGGA-TTTACTGATCTCCTCATTATAAGCTCTGT-------AAAGCTT-CAGATACCCACATGCATCCACAT-GCTTCCAGGCT----GAGGATGGTGGGCTCAAGGAGGGAGGTGGGAAAAACAAGA-----AG-----GGTCTAA--TGTCCTTTGGATCTGCTGGGTACCAGA-----CACAGACTACAATTCACCTACACTCTAACCCCAGTGTTACTGTTATTCCTTATGTTGGC------ACATTGCA--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13980137 219 - 14338769 GGTAGA-TTTACTGATCTCCTCATTATAAGCTCTGT-------GAAGCTT-CAGATACCCACATGCATCCACAT-GCTTCCAGGCT----GAGGATGGTGGGCTCAAGGAGGGATGTGGGAAAAACAAGA-----AG-----GGTCTAA--TGTCCTTTGGATCTGCTGGGTACCAGA-----CACAGACTCCAATTCACCTACACTCTAACCCCAGTGTTACTGTTATTCCTTATGTTGGC------ACATTGCA--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 923374 218 + 1946073 GGTGGA-TTTACTGATCTCCTCATTATAAGCTCTGT-------GAAGCTT-CAGATACCCACATGCATCCACAT-GCTTCCAGGCT----GAGGATGGTGGGCTCAAGGAGGGAAGTGGGAAAAACAAGA-----AG-----GGTCTAA--TGCCCTTTGGATCCGTTGGGTACCAGA-----CACAGACTCCAATTCACCTACACTCT-ACCCCAGTGTTACTGTTATTCCTTATGTTGGC------ACATTGCA--- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1953833 207 - 2117846 GGCGG-----ACTGAGCTCCTCATTACAAGCTCTGT-------GAAGCTT-CA-ATAACCACATGCATCCACAT-GATCCCAGGTT----GAGGATGGTGGGCTCAAGGAGGGAGGTGGGAAAAACAAGA--------------TCTAA--TATCCTTTGGATCTGTTGGGTACCAG-------ATACACTCAAATTCACCTACACTCT-ACCCCAGTGCTACTGTTATTCCTTGTGTTGGC------ACATTGCA--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8867726 211 - 16357246 GGTGGA-TTTACTGAGCTTCTCATTACAAGCTCTGT-------GAAGCTT-CG-ATATCCGCATGCATCCACAT-GTTCCCAGGTT----GAGGATGGTGGGCTCAAGGAGGGAGGAGGGAAAAACAAGA--------------TCTAA--TGTCCTCTGGATGTGTTGGGTACCAG-------ATACACTCAAATTCACCTACACTCT-ACCCCAGTGCTACTGCTATTCCTCATGTTGGC------ACATTGCA--- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1350876 211 - 1807191 GGTGGA-TTTACTGAGCTCCTCATTACAAGCTCTGT-------GAAGCTT-CA-ATATCCGCATGCATCCACCT-GCTCCCAGGTT----GAGGATGGTGGGCTCAAGGAGGGAGGTGGGAAAAACAAGA--------------TCTAA--TGTCCTCTGGATCTGTTGGGTACCAG-------ATACACTCAAATTCACCTACACTCT-ACCCCAGTGCTACTGTTATTCCTCATGTTGGC------ACATTGCA--- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 30839 212 + 5963231 GGTGGA-TTTACTGAGCTCCTCATTACAAGCTCTGT-------GAAGCTTGCA-ATATCTGCATACATCCACAT-GCTCCCAGGTT----GAGGATGGTGGGCTCAAGGAGGGAGGTGGGAAAAACAAGA--------------TCTAA--TGTCCTTTGGATCTGTTGGGTACCAG-------ATACACTCAAATTCACCTACACTCT-ACCCCAATGCTACTGTTATTCCTCATGTTGGC------ACATTGCA--- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36294152 196 - 42659167 AGCAGA-CTCACTGTGCTCCTCACAGCAAGCTCTCT-------TGTGCTT-CAAAGACCCATG-GTATCC---------CCAGGCT----GAGGATGGTGAGCTCAAAG-GGAATGCAAGAGAAACGAGAGGAGAAG-----GCCCTAA--TGTC-------TCTGT------CCAGA-----CACTGTCTCCAGGTCA-CTaggatct-gactcag---cactgtcattcctaatattGGC------ACAACATG--- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82818852 209 + 104043685 GTTGAC-TTTGCTAAGTGTTTCTTAACAATCTCTAT-------AAAGCTG--AGGTACA-----ACATCCATATAGAACTCAAGTTGAACGAAGATGGTAAATTCAATGATAAA-ACAGAAGAAACAAGA-----GAGT---GGTCTAACGTGTTCTCTGGAT-TCTTGAGTACTAGA-----CACAGTCACCAAATCAGTTGTGATCT-ACCTCA----------------TCATGGTAGTAGATGGACACTACA--- i mm10.chr15 I 1 C 0 s canFam3.chr10 46090017 218 - 69331447 AGTGGACTTCATTGAACTCCTCATAACAAGCTCCTT-------GGAGCTA-CTTGCAACCATGTACAGCCATAG-CTACCTTGGCG----GCAGGCGGTAAGCTCAAGGAGGGAG------AAAAGGAGA-----TGGGA--GGGTGAA--GGTCCCTCAGATCTGCCGGAGCCCAGATGTGCCACTGTCTCCAGCTCATCTGCAATCT-CCCTCAGAGCTACAGTTAGTACTTAGATTGGC------CCAAT------ i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 63846 225 + 1056298 AAGGAC-TCTATTGAATTCCTCATAACAAGGTACATGGAGCCAGGAGCTT-TAGATGCCTACCCGCACCGTCAG--------GGCT----GAGGATGGTGCGCTCTCGGGGGAGGAGGGAGGAAACAAGA-----AGAGATGGGGCTCA--TCTCCAGTGGATCTGCC-TGCACCAGG-----CACTGTCTCCAGCTCATCTGCAATCT-ACCTTAGAGCTGCTGTTATTACTTACACTGGT------AAAGCACGGGG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5082185 229 - 6317780 I e micMur3.chr7 5718509 217 + 108171978 I a score=501108.000000 s hg38.chr22_GL383582v2_alt 83014 36 + 162811 GGGCTTGGG---ACACAGGGGCCTGCCAGCCC--CACCCTG s panTro5.chr22 28863362 36 + 37823149 GGGCTTGGG---ACACAGGGGCCTGCCAGCCC--CACCCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41137980 36 + 50109623 GGGCTTGGG---ACACAGGGGCCTGCCAGCCC--CACCCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3160257 36 + 4464012 GGGCTTGGG---ACACAGGGGCCTGCCAGCCC--CACCCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106656400 36 - 115148730 GGGCTTGGG---ACACAGGGGCCTCCCAGCCC--CACCCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84272517 36 + 92844088 GGGCTTGGG---ACACAGGGGCCTGCCAGCTC--TATTGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87617527 36 - 96509753 GGGCTTGGG---ACACAGGGGCCTGCCAGCTC--TATCGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7109361 36 - 13098629 GGGCTTGGG---ACACAGGGGCCTGCCAGCTC--TATCGTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4076149 36 - 4483953 GGGCTTGGG---ACACAGGGGCCTGCCAGCTC--TATCGTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24706208 36 + 33263144 GGGCTTGGG---ACACGGGGGCCTGCCAGCTC--TATCCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13980356 36 - 14338769 GGGCTTGGG---ACACAGGGGCCTGCCAGCTC--TATCGTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 923592 38 + 1946073 GGGCTTGAG---ACACAGGGGCCTGCCAGCTCTATATCCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1954040 36 - 2117846 GGGCTTGGG---ACACAGGAGCCTGCCAGCCC--CACCCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8867937 36 - 16357246 GGGCTTGGG---ACACAGGAGCCTGCCAGCCC--CACCCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1351087 36 - 1807191 GGGCTTGGG---ACACAGGGGCCTGCCAGCCC--CACCCTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 31051 36 + 5963231 GGGCTTGGG---ACACAGGAACCTGCCAGCCC--CACCCTG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5718726 36 + 108171978 GGGCCTGGG---ACACAGGAGCCTGCCAGCCC--CACTCTG i micMur3.chr7 I 217 C 0 s proCoq1.NW_012136747v1 5082414 36 - 6317780 GGGCCTGCG---ACACAGGAGCCTGCCAGCCC--CACCCTG i proCoq1.NW_012136747v1 I 229 C 0 s otoGar3.GL873526 36294348 35 - 42659167 -GGGCTGGA---ACACAGGGACCTGCCAGTCT--CACCCTG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82819061 8 + 104043685 ---------------------------------GCACTGTG i mm10.chr15 C 0 C 0 s canFam3.chr10 46090235 35 - 69331447 CGGACTGGG---ACTCTGGGACCTGCCAGTCT--CACCC-A i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 64071 39 + 1056298 GGGTGGGGGGGTATGCAGGAGCTGGCCAGCTA--GACCTAG i dasNov3.JH570235 C 0 I 13 a score=105730.000000 s hg38.chr22_GL383582v2_alt 83050 7 + 162811 CCTTGCC s panTro5.chr22 28863398 7 + 37823149 CCTTGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41138016 7 + 50109623 CCTTGCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3160293 7 + 4464012 CCTTGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106656436 7 - 115148730 CCTTGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84272553 7 + 92844088 CCTTGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87617563 7 - 96509753 CCTTGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7109397 7 - 13098629 CCTTGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4076185 7 - 4483953 CCTTGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24706244 7 + 33263144 CCTTGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13980392 7 - 14338769 CCTTGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 923630 7 + 1946073 CCTTGCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1954076 7 - 2117846 CCTTGCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8867973 7 - 16357246 CCTTGCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1351123 7 - 1807191 CCTTGCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 31087 7 + 5963231 GCTTGCT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5718762 7 + 108171978 CCCTGCT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5082450 7 - 6317780 CCTTGCT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36294383 7 - 42659167 CCTTGCT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82819069 3 + 104043685 GCC---- i mm10.chr15 C 0 C 0 s canFam3.chr10 46090270 7 - 69331447 CCTTGCC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 64110 13 + 1056298 I a score=2244587.000000 s hg38.chr22_GL383582v2_alt 83057 163 + 162811 GAAGGGTAGGCTCAGG---CTCCTGGGCCA--TAAGG------AGGGA-AATAT-GGGGCTCTTGGCACT-GGGACTGGCTCCTGTGAGGCAGACGGCTGTCCCC-CGGG--GAGGAGTCAGACTACTGG-CATTTCCTAATGACCCATCCAGGGCTCTGATGGCACCA--GCAAGATCAAAG s panTro5.chr22 28863405 163 + 37823149 GAAGGGTAGGCTCAGG---CTCCTGGGCCA--TAAGG------AGGGA-AATAT-GGGGCTCTTGGCACT-GGGACTGGCTCCTGTGAGGCAGACGGCTGTCCCC-CGGG--GAGGAGTCAGACTACCAG-CATTTCCTAATGACCCATCCAGGGCTCTGACCGCACCA--GCAAGATCAAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41138023 163 + 50109623 GAAGGGTAGGCTCAGG---CTCCTGGGCCA--TAAGG------AGGGA-AATAT-GGGGCTCTTGGCACT-GGGACTGGCTCCTGTGAGGCAGACGGCTGTCCCC-CGGG--GAGGAGTCAGACTACCAG-CATTTCCTAATGACCCATCCAGGGCTCTGACCACACCA--GCAAGATCAAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3160300 163 + 4464012 GAAGGGTAGGCTCAGG---CTCCTGGGCCA--TAAGG------AGGGA-AATAT-GGGGCTCTTGGCACT-GGGACTGGCTTCTGTGAGGCAGACGGCTGTCCCT-CGGG--GAGGAGTCAGACTAGCAG-CATTTCCCAATGACCCATCCAGGGCTCTGACCGCACTA--GCAAGATCAAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106656443 163 - 115148730 GAAGGGTAGGTTCAGG---CTCCTGGGCCC--TAAGG------AGGGA-AATAT-GGGGCTCTTGGCACT-GGGACTGGCTTCTGTGAGGCAGACGGCTGTCCCT-TGGG--GAGGAGTCAGACTACCAG-CATTTCCTAATGACCCATCCAGGGCTCTGACCGCACTA--GCAAGATCAAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84272560 163 + 92844088 GAAGGGTAGGCTCAGG---CTCCTGCGCCA--TAAGG------AGGGA-AATAT-GGGGCTTTTGGCACT-GGAACTGGCTTCTGTGATGCAGACGGCTATCCCT-TGGG--GAGGAGTCAGACTACCAG-CATTTTCTAACGACCCATCCAGGGCTCTGACCACACGA--GCAAGATCAAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87617570 163 - 96509753 GAAGGGTAGGCTCAGG---CTCCTGCGCCA--TAAGG------AGGGA-AATAT-GGGGCTTTTGGCACT-GGAACTGGCttctgtgatgcagacggctatcccc-tggg--gaggagtcagactaccag-catttTCTAACGACCCATCCAGGGCTCTGACCACACGA--GCAAGATCAAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7109404 163 - 13098629 GAAGGGTAGGCTCAGG---CTCCTGCGCCA--TAAGG------AGGGA-AATAT-GGGGCTTTTGGCACT-GGAACTGGCTTCTGTGATGCAGACGGCTATCCCT-TGGG--GAGGAGTCAGACTACCAG-CATTTTCTAACGACCCATCCAGGGCTCTGACCACACGA--GCAAGATCAAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4076192 163 - 4483953 GAAGGGTAGGCTCAGG---CTCCTGCGCCA--TAAGG------AGGGA-AATAT-GGGGCTTTTGGCACT-GGGACTGGCTTCTGTGATGCAGACAGCTATCCCT-TGGG--GAGGAGTCAGACTACCAG-CATTTTCTAACGACCCATCCAGGGCTCTGACCACACGA--GCAAGATCAAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24706251 163 + 33263144 GAAGGGTAGGCTCAGG---CTCCTGGGCCA--TAAGG------AGGGA-AATAT-GGGGCTTTTGGCACT-GGGACTGGCTTCTGTGATGCAGACAGCTATCCCT-AGGG--GAGGAGTCAGACTACCTG-CATTTTCGAACGACCCATCCAGGGCTCTGACCACACTA--GCAAGATCAAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13980399 163 - 14338769 GAAGGGTAGGCTCAGG---CTCCTGCGCCG--TAAGG------AGGGA-AGTAT-GGGGCTTTTGGCACT-GGGACTGGCTTCTGTGATGCAGACAGCTATCCCT-TGGG--AAGGAGTCAGACTACCAG-CATTTTCTAACGACCCATCCAGGGCTCTGACCACACGA--GCAAGATCAAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 923637 163 + 1946073 GAAGGGTAGGCTCAGG---CTCCTGGGCCA--TAAGG------AGGGA-AATAT-GGGGCTTCTGGCACT-GGGACTGGCTTCTGTGATGCAGACAGCTATCCCT-TGGG--GAGGAGTCAGACTACCAG-CATTTTTTAACGACCCATCCAGGGCTCTGACCACACTA--GCAAGATCAAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1954083 163 - 2117846 GAAAGGTAGGTTCAGG---CTCCTGGGCCA--TAAGG------AGGGA-AATAT-GGGGCTCTTGGCAGT-GGGACTGGCTTCTGTGATCCAGACACCTGTCCCT-CCAG--GAGGACCCAGACCACCAG-CATTTCCTAACAACCCATCCAGGGCTCTGACTGCACTA--CCAAGATCAAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8867980 163 - 16357246 GAAGGGTAGGTTCAGG---CTCCTGGGCCA--TAAGG------AGGGA-AATAT-GGGGCTCTTGGCAGT-GGGACTGGCTTCTGTGATCCAGACAGCTGTCCCT-CGGG--GAGGCCCCAGACCACCAG-CATTTCTTAACAACCCATCCAGGGCTCTGACTGCACTA--GCAAGATCAAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1351130 163 - 1807191 GAAGGGTAGGTTCAGG---CTCCTGGGCCA--TAAGG------AGGGA-AATAT-GGGGCTCTTGGCAGT-GGGATTGGCttctgtgatccagacagctgtccct-cagg--gaggacccagaccaccag-catttcCTAACAACCCATCCAGGGCTCTGACTGCACTA--GCAAGATCAAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 31094 163 + 5963231 GAAGGGTAGGTTCAGG---CTCCTGGGCCG--TAAGG------AGGGA-AATAT-GGGGCTCTTGGCAGT-GGGACCggtttctgtgatccagacagctgtccct-tgag--gaggacccagaccaccag-catttcCTAACAACCCATCCAGGGCTCTGACTGCACTA--GCAAGATCAAAG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5718769 166 + 108171978 GAGGGGCAGGCTCAGG---CTCCTGGGGCA--TAGGG------AGGGG-AATGATAGGGCTCCTGGCACT-GAGACTATTttctgtgacgcagacagctgccctc-tggg--gaggagccagaccaacag-catttcataATGACCCATCCAGGGCTCTAACCCCACCACGGCAAGATCAAAG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5082457 166 - 6317780 GAGGGGCAGGCTCAGG---CTCCTGGGGCA--TAGGG------AGGGC-AATAGCGGGGCTCCTGGCACC-GAGACtggtttctgtgacgcagacagctgccctc-tggg--gaggagccagaccaacag-catttcataATGACCCATCCAGGGCTCTGACCCCATCATGGCAAGATCAAAG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36294390 167 - 42659167 GAGGAGCTGGCTCAGG---CTCCTGGGATG--CAGTG------AGGGG-ACTGA-GGGGCTTCTGACACTGGGGACtggtttctgtgatacagatagctgcctct-ttggaagaggagccagaccaccag-tgtttcataatga-ccatcCTGGGCTCTCACCTCACCATGGCAAGATCAAAG i otoGar3.GL873526 C 0 I 111 s mm10.chr15 82819072 129 + 104043685 ---------------A---CTTCTGAACCACCTAAGA------GGGGATGACAT-----------GCCCT-AGAAATGACTGCAGTG---CTGAGAGC--CCCTC-TCAG--CACAGGCCAGATC-CTTG-TGTTTTGTCATGACCTATCCT-GGCTCTCCCCCTACTA-------CTCAAAC i mm10.chr15 C 0 I 2 s canFam3.chr10 46090277 145 - 69331447 GAGGG----------G---CTCTTGAATCC--TGAGAACTATCAGGGC-AAGGC-AAGCCCC--GGCACT-GG-------TTCTGGGGCGCCGAGTGTGGCCTCTCTGGG--GAAGGGCCAGAC-ACCAG---TCCCTTCACAA-CCATCAGGAGCCCAAACC-CACT---GCATCATCAGAG i canFam3.chr10 C 0 I 147 s dasNov3.JH570235 64123 168 + 1056298 GAGGGACAGGTTCAGACCTCCCCTGAGGTC--CTGGG------AGGGG-AATAACAGGGCAG--GACAGT-AGGATTGATTTCTATGTTGCAGACAGCCAGCCCT-CCAT--TGGCAGCCAAATCACAAGCCATTTTATAATGACCCATCCAGGGCTCTGAAGCCACCACTGCAAGAGCAAAG i dasNov3.JH570235 I 13 C 0 a score=2453009.000000 s hg38.chr22_GL383582v2_alt 83220 203 + 162811 TCTGCAG---------------------------CAGA---------GATAGCAGCTTTAAAATGC-TAC--TGCAACGAGAGCTGCAGAAAGTAGAATTCCCAGCTG--TTTTTTCATGAGAGTAGAAGAAAAAAAAAAAACCCTCCACACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTACGCACAGTGGAATTATTAATGAGCTACCACAGCCTTTTTTTCTC----GTCTTAATTGTTGTGGCTCATTGCATTAAATACATTA s panTro5.chr22 28863568 203 + 37823149 TCTGCAG---------------------------CAGA---------GATAGCAGCTTTAAAATGC-TAC--TGCAACGAGAGCTGCAGAAAGTAGAATTCCCAGCTG--TTTTTTCATGAGAGTAGAAG--AAAAAAAAAACCCTCCACACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTACGCAGAGTGGAATTATTAATGAGCTACCACAGCCTTTTTTTCTCT--TGTCTTAATTGTTGTGGCTCATTGCATTAAATACATTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41138186 202 + 50109623 TCTGCAG---------------------------CAGA---------GATAGCAGCTTTAAAATGC-TAC--TGCAACGAGAGCTGCAGAAAGTAGAATTCCCAGCTG--TTTTTTCATGAGAGTAGAAG---AAAAAAAAACCCTCCACACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTACGCAGAGTGGAATTATTAATGAGCTACCACAGCCTTTTTTTCTCT--TGTCTTAATTGTTGTGGCTCATTGCATTAAATACATTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3160463 206 + 4464012 TCTGCAG---------------------------CAGA---------GATAGCAGCTTTAAAATGC-TAC--TGCAATGAGAGCTGCAGAAAGTAGAATTCCCAGCTGT-TTTTTTCATGAGAGTAGAAG--AAAAAAAAAACCCTCCACACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTACGCACAGTGGAATTATTAATGAGCTACCACAGCCTTTTTTTCTCTTCTGTCTTAATTGTTGCGGCTCATTACATTAAATACATTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106656606 204 - 115148730 TCTGCAG---------------------------CAGA---------GATAGCAGCTTTAAAATGC-TAC--TGCAAGGAGAGCTGCAGAAAGTAGAATTCCCAGCTG--TTTTTTCATGAGAGTAGAAG---AAAAAAAAAACCTCCACGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTATGCACAGTGGAATTATTAATGAGCTACCACAGCCTTTTTTTCTCTTCTGTCTTAATTGTTGTGGCTCATTGCATTAAATACATTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84272723 194 + 92844088 CCTGCAG---------------------------TAGA---------GATAGCAGCTTTAGAATGC-TAC--TGCAAGGAGAGGTACAGAAAGTAGAATTCCCAGCTGTGTTTTTTCATGAGAGTAGAAG-----AAAAAAACCCTCCACACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTACGCACAGTGGAATTATTAATGAGCTACCATAGCCTTTTT----------TTCTAATTGTTGTGGCTCATTGCATTAAATACATTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87617733 194 - 96509753 CCTGCAG---------------------------TAGA---------GATAGCAGCTTTAGAATGC-TAC--TGCAAGGAGAGGTACAGAAAGTAGAATTCCCAGCTGTGTTTTTTCATGAGAGTAGAAG-----AAAAAAACCCTCCACACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTACGCACAGTGGAATTATTAATGAGCTACCACAGCCTTTTT----------TTCTAATTGTTGTGGCTCACTGCATTAAATACATTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7109567 199 - 13098629 CCTGCAG---------------------------TAGA---------GATAGCAGCTTTAGAATGC-TAC--TGCAAGGAGAGGTACAGAAAGTAGAATTCCCAGCTGTGTTTTTTCATGAGAGTAGAAG-----AAAAAAACCCTCCACACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTACGCACAGTGGAATTATTAATGAGCTACCACAGCCTTTTTTTCTC-----TTCTAATTGTTGTGGCTCATTGCATTAAATACATTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4076355 199 - 4483953 CCTGCAG---------------------------TAGA---------GATAGCAGCTTTAGAATGC-TAC--TGCAAGGAGAGGTACAGAAAGTAGAATTCCCAGCTGTGTTTTTTCATGAGAGTAGAAG-----AAAAAAACCCTCTACACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTACGCACAGTGGAATTATTAATGAGCTACCACAGCCTTTTTTTCTC-----TTCTAATTGTTGTGGCTCATTGCATTAAATACATTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24706414 168 + 33263144 CCTGCAA---------------------------CAGA---------GATAGCAGCTTTAAAATGC-TAC--TGCAAGAAGAGGTACAGAG-------------------------------AGTAGAAG-----AAAAAAACCCTCCACACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTACGCACAGTGGAATTATTAATGAGCTACCACAGCCTTTTTTTCTC-----TTCTAATTGTTGTGGCTCATTGCATTAAATACATTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13980562 199 - 14338769 CCTGCAG---------------------------TAGA---------GATAGCAGCTTTAGAATGC-TAC--TGCAAGGAGAGGTACAGAAGGTAGAATTCCCAGCTGTGTTTTTTCATGACAGTAGAAG-----AAAAAAACCCTCTACACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTACGCACAGTGGAATTATTAATGAGCTACCACAGCCTTTTTTTCTC-----TTCTAATTGTTGTGGCTCATTGCATTAAATACATTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 923800 192 + 1946073 CCTGCAG---------------------------CAGA---------GATAGCAGCTTTAAAATGC-TAC--TGCAAGGAGTGCTACAGAAAGTAGAATTCCCAGCTGTGTTTTTTCATG--AGTAGAAG-----AAAAAAACCCTCCACACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTACGCACAGTGGAATTATTAATGAGCTACCACAGCCTTTTT----------TTCTAATTGTTGTGGTTCACTGCATTAAATACATTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1954246 203 - 2117846 TCTGCAG---------------------------CAGA---------GATAGCAGCTTTAGATTGC-TGC--TGCAAAGAGAGCTGCAGAAAGTAGAATTCCCAGCTGTGTTTTTTCATGAGAGTAAAAG------AAAAAACCCGCTACGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTATGCACAGTGGAATTATTAATGAGCTACCACAGCCTGTTTTTCTCTTCTGTCTTAATTGTTGGGGCTCACTGtaataaatgtatta i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8868143 195 - 16357246 TCTGCAG---------------------------CAGA---------GATAGCAGCTTTAAATTGC-TGC--TGCAAAGAGAGCTGCAGAAAGTAGAATTTCCAGCTGTGTTTCTTCA------TAAAAG------AAAAAACCCTCTATACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTATGCACAGTGGAATTATTAATGAGCTATCGCAGCCTGTTTTTCTCT--TGTCTTAATTGTTGGGGCTCACTATGATAAATGTATTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1351293 178 - 1807191 -------------------------------------------------------------ATTGC-TGC--TGCAAAGACAGCTGCAGAAAGTAGAATTCCCAGCTGTGTTTTTTCATGAGAGTAAAAG------AAAAAACCCTCTATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTATACACAGTGGAATTATTAATGAGCTACCACAGCCTGTTTTTCTCTTCTGTCTTAATCGTTGGGGCTCACTTTAATAAACGTATTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 31257 203 + 5963231 TCTGAAA---------------------------AAGA---------GATAGCAGCTTTAAATTGC-TGC--TGCAAAGAGAGCTGCAGAAAGTAGAATTCCCCGCTGTGTTTTTTCATGAGAGTAAAAG------AAAAAACCCTCTACGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTATGCACAGTGGAATTATTAATGAGCTACCACAGCCTGTTTTTCTCTTCTGTCTTAATTGTTGGGGCTCACTGTAATAAATGTATTA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5718935 205 + 108171978 CCTGCAG---------------------------TAGA---------GACAGCAGCTCTAAAATGC-TGCTGTGCAAGGGCAGCTGCACAAAGTGAAATTCTCAGCTGTGTTTCTTCATGAGAGTAAAAG-----AAAAATCCCCTCCAGGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTCTTTATGCACAGTGGAATTATTAATGAGCTACCAAAGCCTTTTTTTC-CTTCTGCCTTAATTGCTGTGGCTCATTGTATTAAATACATTC i micMur3.chr7 C 0 I 16 s proCoq1.NW_012136747v1 5082623 205 - 6317780 CCTGCGG---------------------------GAGA---------GAGAGCTGCTCTAAAATGC-TGCTGTGCAAGGGCAGCTGCACAGAGTGAAATTCTCAGCTGTGTTTCTTCATGACAGTAAAAG-----AAAAATCCCCTCTAGGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTCTTTATGTACAGTGGAATTATTAATGAGCTACGAAGGCCCTTTTCTC-CTTCTGCTTTAATTGTTGTGGCTCATTGTATTAAACACATTC i proCoq1.NW_012136747v1 C 0 I 14 s otoGar3.GL873526 36294668 201 - 42659167 CCTGCAG---------------------------TAGA---------GAGAGTGGCTCTAAAATGC-TGC--TTCGAGGGCAGCCGTAGAAAGTAGAACTCCTAGCTG-GTTTCTTCATGAGGGTAAAAG-----AAAAATCCCCTCTGGGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTCTTTATGCACAGTGGAATTATTAATGAGCTAccaaa-cttctttttt-cttctgccttgattgttgtggctcattggattaaatgcattt i otoGar3.GL873526 I 111 I 4 s mm10.chr15 82819203 115 + 104043685 --------------------------------------------------------------------CC--CGCA---------GCAGGGAGTGAAATTTCCAGCTGTGTTTCT----------------------------CTTCTAGGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTATTAATGAGC-AACACAGCCTTATTCCT-----TGTCTTAATTGTTGTGGGTT-TTGTATT-AATACATTA i mm10.chr15 I 2 C 0 s canFam3.chr10 46090569 427 - 69331447 tctgcagggtcacaccctgggctgaaggcggccctaaaccgctgCCGGAGAGCAGCTTCTAAAGGCTTGC--TGCATGGGTAGCTGCGAAGAG--GGAGTCCCAGCTGGGCCTCATCCTGAGGGTAAGAG-----GAAAACCCCCTCCAGGCTGGATTCTTTTTTTTTTttttttttaaagattttatttattcatgagacacacagagaagcagagacacaggcagagggagaagcaggctccatgcagggagcccgacgtgggactcatccagggtctccaggatcacgccctgggctgcaggtggcgctaaatcgctgcgccacgggggctgcccCAGGCTGGATTCTTTATGCACCAT-AAGTTACTAATGCGCTGCTGCAGCTCTTTTTTC-CTTTGGTCGTAATTGTTGTGGCTCATTGCATT-AATATACTA i canFam3.chr10 I 147 I 8 s dasNov3.JH570235 64291 203 + 1056298 TCTGGAG---------------------------CAGA---------GAGCTGGGCTTTAAAATGC-TGC--TGTGAGGGTGGCTGTAAAAAGTAAAATTCCCAGCTGTGTTTCTTCATGAGGGTAAAAG-----AAATTCTCCCTCCAGGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTCTTTATGCATAGTAGAATGATTAATGAACCACCACAGGCCCCtttcc-cttccgtctgaattgttggggctcattgcattaaatacatta i dasNov3.JH570235 C 0 C 0 a score=-100305.000000 s hg38.chr22_GL383582v2_alt 83423 15 + 162811 ATT------AAAAAA--A--AAAAA- s panTro5.chr22 28863771 11 + 37823149 ATT----------TT--A--AAAAA- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41138388 10 + 50109623 ATT-----------T--T--AAAAA- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3160669 11 + 4464012 ATT----------AA--A--AAAAA- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106656810 17 - 115148730 ATT----AAAAAAAA--A--AAACA- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84272917 21 + 92844088 ATTAAAAAAGAAAAC--A--ACAAA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87617927 21 - 96509753 ATTAAAAAAGAAAAC--A--ACAAA- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7109766 21 - 13098629 ATTAAAAAAGAAAAC--A--ACAAA- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4076554 21 - 4483953 ATTAAAAAAGAAAAC--A--ACAAA- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24706582 23 + 33263144 ATTAAAAAATAAAACAAA--ACAAA- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13980761 21 - 14338769 ATTAAAAAAGAAAAC--A--ACAAA- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 923992 23 + 1946073 ATTAAAAAACAAGACAAA--ACAAA- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1954449 12 - 2117846 att---------ttt--t--aaaaa- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8868338 12 - 16357246 ATT---------TTT--T--TAAAA- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1351471 14 - 1807191 ATT---------TTT--TTAAAAAA- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 31460 12 + 5963231 ATT---------TTT--T--TAAAA- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36294873 3 - 42659167 ttt----------------------- i otoGar3.GL873526 I 4 C 0 s mm10.chr15 82819318 4 + 104043685 ---------------------AACA- i mm10.chr15 C 0 I 9 s canFam3.chr10 46091004 1 - 69331447 A------------------------- i canFam3.chr10 I 8 C 0 s dasNov3.JH570235 64494 5 + 1056298 ---------------------ttaac i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5082828 14 - 6317780 I e micMur3.chr7 5719140 16 + 108171978 I a score=3594512.000000 s hg38.chr22_GL383582v2_alt 83438 239 + 162811 --------AAACagagctcatgctcttattactgtaaccccccccacctggagccaaatcctgtgcctatgacataacaagcaacacaaaacagctgaccatgatgtcagaaatgcagggtcaacatcaggtgggggggaag----gtggcaggagt--cacaga---tcatgaaacaaagattctgtttctatggagatgt-c-ccagtaataaaaGTCTTCCCTGAGACATCAACAGCTC-TTTAAAGA----TCTGGGTG s panTro5.chr22 28863782 237 + 37823149 --------AAACagagctcatgctcttattactgtaa-cccccccacctggagccaaatcctgtgtctatgacataacaagcaacacaaaacagctgaccatgatgtcagaaatgcagggtcaacatcaggtgggggggaag----gtggcaggagt--cacaga---tcatgaaataaagattctgtttctatggagatgt-c-ccagtaataaaaGTCTTCCCTGAGACATCAACAGCTC-TTTAAAGA----TCTGGGT- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41138398 237 + 50109623 --------AAACagagctcatgctcttattactgtaa-cccccccacctggagccaaatcctgtgcctatgacataacaagcaacacaaaacagctgaccatgatgtcagaaatgcagggtcaacatcaggttggggggaag----gtggcaggagt--cacaga---tcatgaaacaaagattctgtttctatggagatgt-c-ccagtaataaaaGTCTTCCCTGAGACATCAACAGCTC-TTTAAAGA----TCTGGGT- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3160680 237 + 4464012 --------AAACagagctcattctcttattactgtaa-cccccccacctggagccaaatcctgtgcctatgacataacaagcaatacaaaacagctgaccatgatgtcagaaatgcagggtcaacatcaggtgggggggaag----gtggcaggagt--cacaga---tcatgaaacaaagattctgtttctatggagacat-c-ccagtaataaaCGTCTTCCCTGAGACATCAACAGCTC-TTTAAAGA----TCTGGGT- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106656827 239 - 115148730 --------AAACagagctcatgctcttattactgtaa---cccccacctggagccaaatcctgtgcctatgacataacaagcaacacaaaacagctgaccacgatgtcagaaatgcagggtcaacatcaggtgggggggaagtcacagatcatgaaa--cacaga---tcatgaaacaaagattctgtttctatggagacgt-c-ccagtaataaaaGTATTCCCTGAGACCTCAACAGCTC-TTTAAAGA----TCTGGGT- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84272938 235 + 92844088 --------AAAGagagctcatgctcttattactgtaa---cccccacctggagccaaatcctgtgcctatgacataacaagcaacacaaaacagctgaccacgatgtcaggaatgcagggtcaacatcaggttggggggaag----gtggcaggagt--cacaga---tcacgaaacagagattctgtttctatggagacat-c-ccagtaataaaaGTTTTCCCTGAGACATCAACAGCTC-TTTAAAGA----TCTGGGT- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87617948 235 - 96509753 --------AAACAGAGCTCATGCTCTTATTACTGTAA---CCCCCACCTGGAGCCAAATCCTGTGCCTATGACATAACAAGCAACACAAAACAGCTGACCACGATGTCAGGAATGCAGGGTCAACATCAGGTTGGGGGGAAG----GTGGCAGGAGT--CACAGA---TCACGAAACAGAGATTCTGTTTCTATGGAGACAT-C-CCAGTAATAAAAGTTTTCCCTGAGACATCAACAGCTC-TTTAAAGA----TCTGAGT- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7109787 235 - 13098629 --------AAACagagctcatgctcttattactgtaa---cccccacctggagccaaatcctgtgcctatgacataacaagcaacacaaaacagctgaccacgatgtcaggaatgcagggtcaacatcaggttggggggaag----gtggcaggagt--cacaga---tcacgaaacagagattctgtttctatggagacat-c-ccagtaataaaaGTTTTCCCTGAGACATCAACAGCTC-TTTAAAGA----TCTGGGT- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4076575 235 - 4483953 --------AAACagagctcatgctcttattactgtaa---cccccacctggagccaaatcctgtgcctatgacataacaagcaacacaaaacagctgaccatgatgtcaggaatgcagggtcaacatcaggttggggggaag----gtggcaggagt--cacaga---tcacgaaacagagattctctttctatggagacat-c-ccagtaataaaaGTTTTCCCTGAGACATCAACAGCTC-TTTAAAGA----TCTGGGT- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24706605 233 + 33263144 --------AAACAGAGCTCATGCTC---TTACTGTAA---CCCCCACCTGGAGCCAAATCCTGTGCCTATGACATAACAAGCAACACAAAACAGCTGACCATGATGTCAGGAATGCAGGGTCAACATCAGGTTGGGGGGAAG----GTGGCAGGAGT--CACAGA---TCACGAAACAGAGATTCTGTTTCTATGGAGACAT-C-CCAGTAATAAAAGTTTTCCCTGAGACATCAACAGCTCTTTTAAAGA----TCTGGGT- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13980782 235 - 14338769 --------AAACagagctcatgctcttattactgtaa---cccccacctggagccaaatcctgtgcctatgacataacaagcaacacaaaacagctgaccatgatgtcaggaatgcagggtcaacatcaggttggggggaag----gtggcaggagt--cacaga---tcacgaaacagagattctgtttctatggagacat-c-ccagtaataaaaGTTTTCCCTGAGACATCAACAGCTC-TTTAAAGA----TCTGGGT- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 924015 235 + 1946073 --------AAACagagctcatgctcttattactgtaa---cccccacctggagccaaatcctgtgcctatgacataacaagcaacacgaaacagctgaccatgatgtcaggaatgcagggtcaacatcaggttggggggaag----gtggcaggagt--cacaga---tcatgaaacagagattctgtttctatggagacat-c-ccagtaataaaaGTTTTCCCTGAGACATCAACAGCTC-TTTAAAGA----TCTGGGT- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1954461 236 - 2117846 --------aaCCagagctcatgctcttattaccataa---ctcccacctggagccaaatcctgtgcctgtgacaaaagcagcagcacagaacagctgaccatgacgtcagaaatgcaggatggacatcaggt--gggggaag----gcggcaggcgg--cccagatcttcatgaaacagagattctgtttctatggagacat-c-ccagtaataaaaGTTTTCTGTGAGACATCAACAGCTC-TTTCAAGA----TCTGGGT- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8868350 236 - 16357246 --------AACCagagctcatgctcttattaccgtaa---cccccacctggagccaaatcctgtgcctgtgacaaaacaagcagcacagaacagctgaccatgacgtcagaaatgcaggatggacatcaggt--gggggaag----gcggcaggcgg--cacagatcttcatgaaacagagattctgtttctatggagacat-c-ccagtaataaaaGTTTTCCATGAGACATCAACAGCTC-TTTCAAGA----TCTGGGT- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1351485 236 - 1807191 --------AACCagagctcatgctcttgttactgtaa---cccccatctggagccaaatcctgtgtctgtgacaaaacaagcagcacagaacagctgaccacgacgtcagaaatgcaggatggacatcaggt--gggggaag----gcagcaggcgg--cacagatcttcatgaaacagagattctgtttctatggagacat-c-ccagtaataaaaGTTTTCCATGAGACATCAACAGCTC-TTTCAAGA----TCTGGGT- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 31472 233 + 5963231 --------AACCagagctcatgctcttattaccgtaa---ccaccacctgaagccaaatcctgtgcctgtgacaaaacaagcagcacagaacagctgaccatgacgtcagaaatgcaggatagacatcagga--gggggaag-------gcaggcag--cacagatcttcatgaaacagagattctgtttctatggagacat-c-ccagtaataaaaGTTTTCCGTGAGACATCAACAGCTC-TTTCAAGA----TCTGGGT- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5719156 229 + 108171978 --------agccagagctcatgttcttattaccgtat--ccccccacctgaagccaaaccctgttcctgtgaca---caagcagcata-aacagct-actgtgacatcagaaatgcagg--caacatcaagtggg---ggaa----gctgtaggagccacacatagcctcgtgaaac--agattctgtttccatggagacgt-c-ccagtaataaAAGTTTTCTCTGAGACATCAACAGCTC-TTTAAAGA----TCTGGGC- i micMur3.chr7 I 16 C 0 s proCoq1.NW_012136747v1 5082842 231 - 6317780 --------agccagagctcatgttctttttactgtgt---cccccacctgaagccaaaccctatgcctgtgacacagcaagcagcata-aacagct-accgtgacgtcagaaatgcagg--taacatcaggtggg---ggaa----gctgtaggagc--tacataacctcgtgaaacagagattctgtttccatggagacat-c-ccagtaataaaaCTTTTCCCTGAGACATCAACAGCTC-TTTAAAGA----TCTGGGC- i proCoq1.NW_012136747v1 I 14 C 0 s otoGar3.GL873526 36294876 233 - 42659167 --------agccagagctcatgttattagcactgtgt---tccctacctgaagtcaaaccctgtg-ctgtgacataacaagcagcaca-aacagccaactatgacgtcagaaacgca-g--caacatcaggcgggggaggag----gctgcaggagc--cacagagcctcatgaaacagagattctgtttccatggagacgc-c-ccagtaatataaGTTTTCCCTGAGACAGCAACAGCTC-TTTAAGGA----TCTAGGC- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82819331 225 + 104043685 --------AATCAAAACTCATG-tcctattactgtat---cctctacctggagtcaaactcta---ctgtagtgtaacaaacaacacaaataacctaatgacaatgtcagaagtg---ggactacatcaggtgagga---------atgacaggagt--cacagaacctccagaaacaaagattctacttccatggagacat-c-ccAGCAG-AAAGTTTTTTCCTGAGGCATCGAGGGTTC-TTTAAAGA----CCTGGGT- i mm10.chr15 I 9 I 781 s canFam3.chr10 46091005 229 - 69331447 --------AACCAGTGCTCACATTCTTATTACTATAT-------TTCCTGGAGCCACAGCCTACATCGGTGACATAAC-AGCAGCACAGGACTGataaccatgatgtcacaaatgcaggaccagcaacaggttggggggatg----at-gcagcagc--cacatactctcaggagaaaaagattctgtttccatggagatgtcc-ccagcaatcaaaGTTCTCTCTAAGA--TGAACAGCTC-TTTAAG------TTTGGGT- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 64499 250 + 1056298 atttttttcaccagagtgcatattcttattgctgcat---tccccatccggagccaaatcctgtgtctatgatgtcacaagcagcacaaaattgctacccatgacatcagaaaggcaggattagtactgggaggtagggaag----ct-gcagaagc--cacagatcttcatgaaataaagatcctgtttccatagagatgt-ctccagtaataaaGGTTTTCCCTGAGACATTAGCAGTTC-TTTAAAGGTTTTTTTGGGA- i dasNov3.JH570235 C 0 C 0 a score=42000.000000 s hg38.chr22_GL383582v2_alt 83677 2 + 162811 GG s panTro5.chr22 28864019 2 + 37823149 GG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41138635 2 + 50109623 GG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3160917 2 + 4464012 GG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657066 2 - 115148730 GG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84273173 2 + 92844088 GG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87618183 2 - 96509753 GG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110022 2 - 13098629 GG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4076810 2 - 4483953 GG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24706838 2 + 33263144 GG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981017 2 - 14338769 GG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 924250 2 + 1946073 GG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1954697 2 - 2117846 GG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8868586 2 - 16357246 GG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1351721 2 - 1807191 GG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 31705 2 + 5963231 GG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5719385 2 + 108171978 GG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5083073 2 - 6317780 GG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36295109 2 - 42659167 GG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46091234 2 - 69331447 GG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 64749 2 + 1056298 GG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82819556 781 + 104043685 I a score=1572729.000000 s hg38.chr22_GL383582v2_alt 83679 95 + 162811 TTGACAGCAAGG-CAGAGATGAAAATGTT-AAACTGCTCTTTACTCCATAAGGG--------------AGGTTAGGGATTCTC-AAAC-CAAGG-ACTTATTTTTGTTATGATT s panTro5.chr22 28864021 94 + 37823149 TTGACAGCAAGG-CAGAGATGAAAATGTT-AAACTGCTCTTTACTCCAC-AGGG--------------AGGTTAGGGATTCTC-AAAC-CAAGG-ACTTATTTTTGTTATGATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41138637 94 + 50109623 TTGACAGCAAGG-CAGAGATGAAAATGTT-AAACTGCTCTTTACTCCAC-AGGG--------------AGGTTAGGGATTCTC-AAAC-CAAGG-ACTTATTTTTGTTATGATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3160919 94 + 4464012 TTGACAGCAAGG-CAGAGATGAAAATGTT-AAACTGCTCTTTACTCCAT-AGGG--------------AGGTTAGGGATTCTC-AAAC-CAAGG-ACTTATTTTTGTTATGATT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657068 94 - 115148730 TTGACAGCAAGG-CAGAGATGAAAATGTT-AAACTGCTCTTTACTCCAT-AGGG--------------AGGTTAGGGATTCTC-AAAC-CAAGG-ACTTATTTTTGTTATGATT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84273175 94 + 92844088 TTGACAGCAAGG-CAGAGATGAAAATGTT-AAACTGTTTCTTACTCCAT-AGGG--------------AGGTTAGGGATTCTC-AAAC-CAAGG-ACTTATTTTTGTTATGATT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87618185 94 - 96509753 TTGACAGCAAGG-CAGAGATGAAAATGTT-AAACTGTTTCTTACTCCAT-AGGG--------------AGGTTAGGGATTCTC-AAAC-CAAGG-ACTTATTTTTGTTATGATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110024 94 - 13098629 TTGACAGCAAGG-CAGAGATGAAAATGTT-AAACTGTTTCTTACTCCAT-AGGG--------------AGGTTAGGGATTCTC-AAAC-CAAGG-ACTTATTTTTGTTATGATT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4076812 94 - 4483953 TTGACAGCAAGG-CAGAGATGAAAATGTT-AAACTGTTTCTTACTCCAT-AGGG--------------AGGTTAGGGATTCTC-AAAC-CAAGG-ACTTATTTTTGTTATGATT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24706840 94 + 33263144 CTGACAGCAAGG-CAGAGATGAAAATGTT-AAACTGTTTCTTACTCCAT-AGGG--------------AGGTTAGGGATTCTC-AAAC-CAAGG-ACTTATTTTTGTTATCATT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981019 94 - 14338769 TTGACAGCAAGG-CAGAGATGAAAATGTT-AAACTGTTTCTTACTCCAT-AGGG--------------AGGTTAGGGATTCTC-AAAC-CAAGG-ACTTATTTTTGTTATGATT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 924252 94 + 1946073 CTGACAGCAAGG-CAGAGATGAAAATGTT-AAACTGCTTCTTACTCCAT-AGGG--------------AGGTTAGGGATTCTC-AAAC-CAAGG-ACTTATTTTTGTTATGATT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1954699 94 - 2117846 TTGACAGCAAGG-CAGAGCTGAAAATGTT-ATACTGCTCCTTACTCCAT-AGGG--------------AGATTAGGGATTCTT-AAAT-CAAGG-ACATATTTTAGTTATGATT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8868588 94 - 16357246 TTGACAGCAAGG-CAGAGCTGAAAATGTT-ATACTGTTCCTTACTCCAC-AGGG--------------AGATTAGGGATTCTT-AAAT-CAAGG-ACATATTTTAGTTATGATT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1351723 94 - 1807191 TTGACAGCAAGG-TAGAGCTGAAAATGTT-ATACTGCTCCTTACTCCAT-AGGG--------------AGATTAGGGATTCTT-AAAT-CAAGG-ACCTATTTTAGTTATGATT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 31707 94 + 5963231 TTGACAGCAAGG-CAGAGCTGAAAATGTT-ATACTGCTCTTTACTCCAT-AGGG--------------AGATTAGGGATTCTT-AAAT-CAAGG-ACCTATTTTAGTTATGATT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5719387 96 + 108171978 TTGACGACAAGGCCAGAGATGAAAATGTT-AAACTGCTCCTTACTCCAC-AGAG--------------AGATTAGGGACTCTTGAAAC-CAAGG-ACTTATTTTTGTTATGAAC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5083075 95 - 6317780 TTGACGACAAGA-CAGAGACGAAAATGTT-AAACTGCTCCTTACTCCAC-AGAG--------------AGATTAGGGACTCTTGAAAC-CAAGG-ACTTATTTTTGTTATGAAC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36295111 96 - 42659167 GTGATGACAAGG-CAGAGATGAAAATGTTAAAACTGCTCCTTATTCCTA-AGAG--------------AGATTAGGGACCCTCAAAAC-CAAGG-ACTTATTTTTGTTATGATT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82820337 95 + 104043685 CTGGCAGCAAGG-CAAAGATGAAAATGTT-ATACTCTTTTTTACTCCAC-CATT--------------AGATTAGAGCCTCTTCAATC-CAGAG-ACTGATCTTGATTATGAAT i mm10.chr15 I 781 I 192 s canFam3.chr10 46091236 95 - 69331447 TTAACAGCAAAG-CAAAGATGAAAGTGTT-AATCTGTTCCTTACTCCAT-GCAG--------------ACATTAGGGCCTCTC-AAACTCAGGG-ACTTATTTTTATTATAATT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 64751 109 + 1056298 CTGACAACAAGG-CAGAGATGAAACTGAC-AAACTGTTCCTTATTCCAC-ATAGAACCTAAACTCTCAAGATCAGGGACTCTT-AAAC-AGAGGCACTTATTTTTATTATAATC i dasNov3.JH570235 C 0 C 0 a score=4435561.000000 s hg38.chr22_GL383582v2_alt 83774 323 + 162811 AGAAAGAAAAGTCCATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATACACAG--AGAG-CAATTTCCAAGAAGACTGTGTGGAAT-AATACAAGCGTCCATCCCCACAGAGCAGTGCAGGCCTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCGC--AATGACC---AAGACATGGTCATCTTGTGAAA--CTGC--CTCTGGGTCCCAGGTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCAGCAAAGCCAGA-GGCCGACAGCCCTACCCTCACTCC--TCCCAACCCAGACC-CCTCTGTCTTGCT-GGACACGCGGCCAC s panTro5.chr22 28864115 323 + 37823149 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATACAG--AGAG-CAATTTCCAAGAAGACTGTGTGGAAT-AATACAAGCGTCCATCCCCACAGAGCAGTGCAGGCCTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCGC--AATGACC---AAGACATGGTCATCTTGTGAAA--CTGC--CTCTGGGTCCCAGGTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCAGCAAAGCCAGA-GGCCGACAGCCCTATCCTCACTCC--TCCCAACCCAGACC-CCTCTGTCTTGCT-GTACACACGGCCAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41138731 323 + 50109623 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATACAG--AGAG-CAATTTCCAAGAAGACTGTGTGGAAT-AATACAAGCGTCCATCCCCACAGAGCAGTGCAGGCCTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCGC--AATGACC---AAGACATGGTCATCTTGTGAAA--CTGC--CTCTGGGTCCCAGGTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCAGCAAAGCCAGA-GGCCGACAGCCCTATCCTCACTCC--TCCCAACCCAGACC-CCTCTGTCTTGCT-GTACACGCGGCCAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161013 322 + 4464012 AGAAAGAAAAGTCAATCAATAAAC-GTG--TTTCCTGGATACAAA-TTACATCATATACAG--AGAG-CAATTTCCAAGAAGAATGTGTGGAAT-AATACAAGCGTCCATCCCCACAGAGCAGTGCAGGCCTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACTGC--AATGACC---AAGACATGGTCATCTTGTGAAA--CTGC--CTCTGGGTCCCAGGTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCAGCAAAGCCAGA-GGCCGACAGCCCTATCCTCACTCC--TCCCAACCCAGACC-CCTCTGTCTTGCT-GGACACGCGGCCAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657162 323 - 115148730 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATAGAG--AGAG-CAATTTCCAAGAAGACTGTGTGGAAT-AATACAAGCATCCATCTCCACAGGGCAGTGCAGGCCTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCGC--AATGACC---AACACATGGTCATCTTGTGAAA--CTGC--CTCTGGTCCCCAGGTCTCCA--CATGAAGGAACAAAGTGCACAGCAGCAGAGGCAGCAAAGCCAGA-GGCCGACAGCCCTATCCTTACTCC--TCCCAACCCAGACC-CCTCTGTCTTGCT-GGACACTCGGCCAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84273269 318 + 92844088 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATACAG--AGAGCCAATTTCTAAGAAGACTGTGTGGAAT-TATACAAGCATCCATCCCCACAGAGCAGTGCATAACTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCAC--AATGACC---AAGACATGGTCATCTCGTGAAA-----C--CTCTGG-TCCCAGCTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCGGCAAAGCCAGA-GGCCGACAACTTTAGCCTCACTCC--TCCCAACCCAGAAC-C--CTGTCTCGCT-GGACACTTGGCTAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87618279 318 - 96509753 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATACAG--AGAGCCAATTTCTAAGAAGACTGTGTGGAAT-TATACAAGCATCCATCCCCACAGAGCAGTGCATAACTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCAC--AATGACC---AAGACATGGTCATCTCGTGAAA-----C--CTCTGG-TCCCAGCTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCGGCAAAGCCAGA-GGCCGACAACTTTAGCCTCACTCC--TCCCAACCCAGAAC-C--CTGTCTCGCT-GGACACTTGGCTAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110118 318 - 13098629 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATACAG--AGAGCCAATTTCTAAGAAGACTGTGTGGAAT-TATACAAGCATCCATCCCCACAGAGCAGTGCATAACTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCAC--AATGACC---AAGACATGGTCATCTCGTGAAA-----C--CTCTGG-TCCCAGCTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCGGCAAAGCCAGA-GGCCGAGAACTTTAGCCTCACTCC--TCCCAACCCAGAAC-C--CTGCCTCGCT-GGACACTTGGCTAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4076906 318 - 4483953 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAGGTTACATCATATACAG--AGAGCCAATTTCTAAGAATACTATGTGGAAT-AATACAAGCATCCATCCCCACAGAGCAGTGCATAACTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCAC--AATGACC---AAGACATGGTCATCTCGTGAAA-----C--CTCTGG-TCCCAGCTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCGGCAAAGCCAGA-GGCTGACAACTTTAGCCTCACTCC--TCCCAACCCAGAAC-C--CTGTCTCGCT-GGACACTTGGCCAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24706934 324 + 33263144 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATACAG--AGAGCCAATTTCTAAGAAGACTGTGTGGAAT-AATACAAGCATCCATCCCCACAGAGCAGTGCATAACTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCAC--AATGACCAAGAAGACATGGTCATCTCGTGAAA--CTGC--CTCTGG-TCCCAGCTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCAGCAAAGCCAGA-GGCCGACAACTTTAGCCTCACTCC--TCCCAACCCAGAAC-C--CTGTCTCGCT-GGACACTTGGCCAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981113 318 - 14338769 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATACAG--AGAGCCAATTTCTAAGAAGACTGTGTGGAAT-AATACAAGCATCCATCCCCACAGAGCAGTGCATAACTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCAC--AATGACC---AAGACATGGTCATCTCGTGAAA-----C--CTCTGG-TCCCAGCTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCGGCAAAGCCAGA-GGCTGACAACTTTAGCCTCACTCC--TCCCAACCCAGAAC-C--CTGTCTCGCT-GGACACTTGGCCAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 924346 323 + 1946073 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATACAG--AGAGCCAATTTAAAAGAAGACTGTGTGGAAT-AATACAAGCATCCATCCCCACAGAGCAGTGCAGAATTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCAC--AATGACC---AAGACATGGTCATCTCGTGAAA--CTGC--CTCTGG-TCCCAGCTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAAAGGCAGCAAAGCCAGA-GGCCGACAACCTCAGCCTCACTCC--TCCCAACCCAGAAC-CCTCTGTCTCGCT-GGACACTTGGCCAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1954793 323 - 2117846 AGAAAGAAAAGTCAATCAATAAACGTTG--TTTCCTGGATACAAAGTTACAACATACACAG--ATAG-TAATTTCCAAGAAGACTGTGTGGAAT-AATACAAACATCCATCCCCACAGAGCAGAGCAGGCCTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCAC--AATGACC---AAGACATGGTCATCTTGTGAAG--CTGC--CTCTGG-TCCCAGCTCTCCA--CATGAAGGAGCAGAGTGCACAGCAGCAGAGGCAGCAAAGCCAGA-GGCCAACAGCCCTGCCCTTACTCC--TCTGAACCCAGACC-CCTCTGTCTCGCT-GGACAGTCGGCCAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8868682 322 - 16357246 AGAAAGAAAAGTCAATCAATAAAC-CTG--TTTCCTGGATACAAAGTTACATCATACACAG--AGAG-CAATTTCCAAGAAGACTGTGTGGAAT-AATACAAACATCCATCCCCAAAGAGCAGTGCAGGCCTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACTGC--AATGACC---AAGACATGGTCATCTTGTGAAG--CTGC--CTCTGT-TCCCAGCTCTCCA--CATGAAGGAGCAGAGTGCACAGCAGCAGAGGCTGCAAAGCCAGA-GGCCAACAGCCCTGTCCTCACTCC--TCCCAACCCAGACC-CATCTGTCTTGCT-GGACAGTCGGCCAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1351817 323 - 1807191 AGAAAGAAAAGTCAATCAATAAAC-CTG--TTTCCTGGATACAAAGTTACATCATACACAG--AGAG-CAATTTCCAAGAAGGCTGTGTGGAAT-AATACAAACATCCATCCCCACAGAGCAGTGCAGGCCTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCGC--AATGACC---AAGACATGGTCATCTTGTGAAG--CTGC--CTCTGG-TCCCAGCTCTCCA--CATGAAGAAGCATAGAGCACAGCAGCAGAGGCAGCAAAGCCAGA-GGCCAACAGCCCTGTCCTTACTCC--TCCCAACCCAGACC-CTTCTGTCTCTTTGGGACAGTCAGCCAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 31801 322 + 5963231 AGAAAGAAAAGTCAATCAATAAAC-CTG--TTTCCTGGATACAAAGTTACATCATACATAG--AGAG-AAATTTCCAAGAAGACTGTGTGGAAT-AATACAAACATCCATTCCCACAGAGCAGTGCAGGCCTCTGGGTCACTATGACTTGAGTCATCAAAAAGACCGC--AATGACC---AAGACATGGTCATCTTGTGAAG--CTGC--CTCTGG-TCTCAGCTCTCCA--CATGAAGGAGCAGAGTGCACAGCAGCAGAGGCAGCAAAGCCAGA-GGCCAACAGCCCTGTCCTCACTCC--TCCCAACCCAGACC-CCTCTGTCTCACT-GGACAGTCGGCCAC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5719483 325 + 108171978 AGAAAGAAAAGTCAATCAATGAAC-ACC--TTTCCTGGATATAAAGACATATCATATATAG--AGCA-GAATTCCTGAGAAGACTGTGTGGAATAAATACAGATATCCATCCCTGCAGAGGAGTACAGGTCTCTGGGTCATTGTGATTTGGGTCAACAAAAAGACCAC--AGTGCCT---GAGACATGGCCATCTTGTGAAA--CTGCTTCTTTGG-TCCCAGCTCTCCA--CACAGAAGGACAGAGTGTGCAGCAGTAAGGGTGGTGAAGCCAGAGGGCCGAAAGCCCCACCTTCACCAC--TCCTGACCTGGGGC-C-TCCCTTTCACT-AGACACTTGGCCAC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5083170 325 - 6317780 AGAAAGAAAAGTCAATCAATGAAA-ACC--TTTCCTGGATATAAAGATACATCATATACAG--GGCA-GAATTCCTGAGAAGACGGTGTGGAATAAATACAGGCATCCATCCCTACAGAGGAGTACAGGCCTCTGGGTCATTGTGACTTGGGTCATCAAAAAGACCGC--AGTGCCC---AAGACATGGCCATCTTGTGAAA--CTGCTTCTTTGG-TCCCAGTTCTCCA--CACAGAAGGACAGAGTGTGCAGCAGCAAGGGCGGTGAAGCCAGAGGGCCGAAAGCCCCACCTTCACCAC--TCCTGACCTGAGGC-C-TCCCTTTCACT-AGACACTTGACCAC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36295207 317 - 42659167 AGAAAGAAAAGCCAATCAATGGAA-AAC--CTTCCTGGACATAAAGACACATCACATGCAGACAGCA-GAAATCCTGAGAAAACTGTGGGGA--AAATACAGGCATCCATCCCTGCAGAGGAGTATCAGCCTCTGGGTCACTGTGAATTGGGTCATCAAAAAGACCAC-------------AAATGTGGCCATCTTGTGAAAAGCTGCTTCTTTGG-TCCCAGCTCTCCA--CATGGA--GGCACAGTGTGCAGCAGTAGGGGTGGTGAAGCCAGAGGGCCAAGAGCCCCGCCTGCATCCT--TCCTGGCCCAGAGC-C-TCCCTCTCACT-AGATGCTTGGCCAC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82820624 269 + 104043685 acaaacaaaAATCAGTCAGTGAAC-ATGCCTTCCTTAAATATAAG---ACATATTACACAG--AATA-GAACTCTTGAGACCA-----TGGAAT-AAGCACAAAATCTATCCCTGCAGAGCAGTG---GACTCTAGGTCTTTGTAACTTGGATCATCAAAAAGCCTGA--ATTGTCT---G---------CGGCTTGTAAAG--CTGCATCTTCGA-TACCATCTCTGCACTCCTGAA-------------------------CTGCAGAGCCAGA-G--CAGGAGTCATACCGTACCTAC--ACACAAGCC---------CTCTCTTGCT-GGAAACTTG----C i mm10.chr15 I 192 C 0 s canFam3.chr10 46091331 324 - 69331447 -----AGGAAGCCAATCCATGAAC-GCC--TTTCCTGGACACACAGATCCATCATGTATAG--AACA-GAATTCCCGAGAAGACACTGTGGGATAAATACAAGCATCCATCCCCA-GGAGCAGTACAGGCTTCTGGGTCACTGTGACTCAGGTCATCAAAAAGATCGATAAATGTCC---AAGACACAGTCGTCTTGTGATG--CTGCTTCCTTGG-TCCCAGATCTCCA--CACCGAGCAGCAGAGCATACACTAGCTGGGGCAGGAAACTCAAG-GAGCCAAGGCCCCCTCCCTGGGCCGACCCCAACCCAGACAGCCTCTCTCTCACT-GAATACTTGGCCAC i canFam3.chr10 C 0 I 208 s dasNov3.JH570235 64860 278 + 1056298 -----TAAAAGTCAATCAGTGAAC-ACC--TTTTCTGGCTAAAAA------------------AGACTCACTCACAGTGAAGACAGCATGGAATAAACACAAACTGCTGTTCCGGCAGAGCAGAGCATGCTGTTGGTTTGCTACAGCTTGGGTCATC--AGAGACCAATAAACGCCC---AAGAC-TTGTCAACTGGTGAAG--CTGT--TTCT---TCACATTTTCTCC--CA------------------AGGACCTGGGGCAGCAAAGCCAGAAGGCCAAGAGCCTCTCCTTCACCGC--TGCTGAACCAGGCAGCCACCCTCTCGCT-AGATATAC------ i dasNov3.JH570235 C 0 C 0 a score=1657290.000000 s hg38.chr22_GL383582v2_alt 84097 105 + 162811 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGACACCATTTACTCACAAGTCCTCAGCTA s panTro5.chr22 28864438 105 + 37823149 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGATACCATTTACTCACAAGTCCTCAGCTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139054 105 + 50109623 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGATACCATTTACTCACAAGTCCTCAGCTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161335 105 + 4464012 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGATACCATTTACTCACAAGTCCTCAGCTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657485 105 - 115148730 CAACTTCTGTTAAATAGACATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGATACCATTTACTCACAAGTCCTCAGCTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84273587 105 + 92844088 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGATACCATTTACTCACAAGCCCTCAGCTa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87618597 105 - 96509753 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGATACCATTTACTCACAAGCCCTCAGCTa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110436 105 - 13098629 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGATACCATTTACTCACAAGCCCTCAGCTa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4077224 105 - 4483953 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGATACCATTTACTCACAAGCCCTCAGCTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24707258 105 + 33263144 CAACTTCTGTTAAATAGAGATGCTACCGGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGATACCATTTACTCACAAGCCCTCAGCTa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981431 105 - 14338769 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGATACCATTTACTCACAAGCCCTCAGCTa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 924669 105 + 1946073 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGTTAC-TAAGATG--------GGC----------CCC--AAAACAGAAAT-TGGCAGATACCATTTACTCACAAGCCCTCAGCTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1955116 103 - 2117846 CAACT--TGTTAAATAGAGATGCTATCGGCTTAAC-----TAGGTAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGATACCATTTACTCACAAGCCCTCAGCTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869004 105 - 16357246 CAACTTCTGTTAAATAGAGATGCTATCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGATACCATTTACTCACAAGCCCTCAGCTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352140 107 - 1807191 CAACTTCTGTTAAATAGAGATGCTATCGGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCCCTAAAACAGAAAA-TGATAGATACCATTTACTCACAAGCCCTCAGCTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32123 105 + 5963231 CAACTTCTGTTAAATAGAGATGCTATCGGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCC--AAAACAGAAAA-TGACAGATACCATTTACTCACAAGCCCTCAGCTA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5719808 105 + 108171978 CAACTTCTGTTAAATAGAGATATTACTAGCTTAGC-----TGGGCAGGCCAC-CAACACA--------GGC----------TCA--AAAAGAAAAAG-TGACAGGTATCATTTACTTATAAACCCTTAGCTA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5083495 105 - 6317780 CAACTTCTGTTAAATAGAGATGTTACCAGCTTAAC-----TGGGCAGGCTAC-CAAGACA--------GGC----------TCA--AAAAGAGAAAG-TGACAGGTATCATTTAGTTACAAACCCTTAGCTA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36295524 98 - 42659167 CAACTTCTGTTAAATAGAGATGTTACCAGCTTAAG-----TAGGCAGGTCAC-CAAGACA--------GGC----------TCA--AAAAGAGAAAG-TGG-------CATTTTCTTATAAAGCCTCAGGTA i otoGar3.GL873526 C 0 I 426 s mm10.chr15 82820893 125 + 104043685 CTAGGTTTGTTAAATAGACAT--TATCGGATTAATGGGGGTAGGGATGGGGC-TGAGGTGTTTGGGTTGGCACATGACAAGTCT--GGAACAGAAAGTTAACAGGCATCATTT--TTACTTACCCTCAACGA i mm10.chr15 C 0 C 0 s canFam3.chr10 46091863 102 - 69331447 CAACTTCTGCCAAAT--ACACGTTACCAACTTACC-----TAAGCAGGCTACACAAGACA--------GAC----------TCA----AACAGAGAG-TTCTGTTTATCATTTTCTTACTAATCCTCAGCTT i canFam3.chr10 I 208 C 0 s dasNov3.JH570235 65138 101 + 1056298 CAACTT-TGTTAAACAGAGATACTGCCAGCTTACC-----TGGGCAGGCTAGACAAGAGA--------GGT----------TCA--AATTTGGAAAG-TGATGAATACCATTTATTAACA----CTTAAATA i dasNov3.JH570235 C 0 C 0 a score=25360.000000 s hg38.chr22_GL383582v2_alt 84202 2 + 162811 AT s panTro5.chr22 28864543 2 + 37823149 AT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139159 2 + 50109623 AT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161440 2 + 4464012 AT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657590 2 - 115148730 AT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84273692 2 + 92844088 at i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87618702 2 - 96509753 at i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110541 2 - 13098629 at i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4077329 2 - 4483953 AT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24707363 2 + 33263144 at i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981536 2 - 14338769 at i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 924774 2 + 1946073 AT i colAng1.NW_012115588v1 C 0 I 6 s calJac3.chrUn_GL286373 1955219 2 - 2117846 AT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869109 2 - 16357246 AT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352247 2 - 1807191 AT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32228 2 + 5963231 AT i aotNan1.NW_018512383v1 C 0 I 1 s micMur3.chr7 5719913 2 + 108171978 AT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5083600 2 - 6317780 AT i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82821018 1 + 104043685 A- i mm10.chr15 C 0 C 0 s canFam3.chr10 46091965 2 - 69331447 GT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 65239 2 + 1056298 AT i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36295622 426 - 42659167 I a score=19130.000000 s hg38.chr22_GL383582v2_alt 84204 2 + 162811 AA- s panTro5.chr22 28864545 2 + 37823149 AA- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139161 2 + 50109623 AA- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161442 2 + 4464012 AA- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657592 2 - 115148730 GA- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84273694 2 + 92844088 aa- i rheMac8.chr10 C 0 I 13 s macFas5.chr10 87618704 2 - 96509753 aa- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110543 2 - 13098629 aa- i macNem1.NW_012012688v1 C 0 I 11 s cerAty1.NW_011999588v1 4077331 2 - 4483953 AA- i cerAty1.NW_011999588v1 C 0 I 5 s chlSab2.chr19 24707365 2 + 33263144 aa- i chlSab2.chr19 C 0 I 10 s manLeu1.NW_012102031v1 13981538 2 - 14338769 aa- i manLeu1.NW_012102031v1 C 0 I 10 s calJac3.chrUn_GL286373 1955221 2 - 2117846 AA- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869111 2 - 16357246 AA- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352249 2 - 1807191 AA- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32231 2 + 5963231 AA- i aotNan1.NW_018512383v1 I 1 C 0 s micMur3.chr7 5719915 2 + 108171978 AA- i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5083602 2 - 6317780 AA- i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46091967 2 - 69331447 AA- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 65241 2 + 1056298 -AT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82821019 0 + 104043685 C e otoGar3.GL873526 36295622 426 - 42659167 I e colAng1.NW_012115588v1 924776 6 + 1946073 I a score=10255.000000 s hg38.chr22_GL383582v2_alt 84206 3 + 162811 TGA s panTro5.chr22 28864547 3 + 37823149 TGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139163 3 + 50109623 TGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161444 3 + 4464012 TGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657594 3 - 115148730 AGA i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87618706 3 - 96509753 aga i macFas5.chr10 C 0 I 3 s calJac3.chrUn_GL286373 1955223 3 - 2117846 AGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869113 3 - 16357246 AGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352251 3 - 1807191 AGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32233 3 + 5963231 AAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5719917 3 + 108171978 AGA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5083604 3 - 6317780 AGA i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82821019 2 + 104043685 -GG i mm10.chr15 C 0 C 0 s canFam3.chr10 46091969 1 - 69331447 --A i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 65243 3 + 1056298 ACA i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36295622 426 - 42659167 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e rheMac8.chr10 84273696 13 + 92844088 I a score=282624.000000 s hg38.chr22_GL383582v2_alt 84209 70 + 162811 --GGGTCCTGCGCTTCTCTGCTGGTGGGCTGGGGTGACAACCTGGGCACAAGCTTCCAC--TAGAGGAGAGGAT s panTro5.chr22 28864550 70 + 37823149 --AGGTCCTGCGCTTCTCTGCTGGTGGGCTGGGGTGACAACCTGGGCACAAGCTTCCAC--TAGAGGAGAGGAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139166 70 + 50109623 --AGGTCCTGCGCTTCTCTGCTGGTGGGCTGGGGTGACAACCTGGGCACAAGCTTCCAC--TAGAGGAGAGGAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161447 70 + 4464012 --AGGTCCTGCGCTTCTCTGCTGGTGGGCTGGGGTGACAACCTGGGCACAAGCTTCCAC--TAGAGGAGAAGAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657597 70 - 115148730 --AGGTCCTGTGCTTCTCTGCTGGTGGGCTGGGGTGGCAACCTGGGCACAAGCTTCCAT--TAGAGGACAGGAT i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1955226 68 - 2117846 --AGGTCCTGTGCTTCTCTGCTGGTGTGCTGGGGTGGCAACCTGGT--CAAGCTTCCAC--TAGAGGAGAGGAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869116 68 - 16357246 --AGGTCCTGTGCTTCTCTGCTAGTGCTCTGGGGTGGCAACCTGGG--CAAGCTTCCAT--TAGAGGAAAGGAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352254 68 - 1807191 --AGGTCCTGTGCTTCTCTGTTGGTGTGCTGGGGTGGCAACCTGGG--CAAGCTTCCAT--TAGAGGAGAGGAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32236 68 + 5963231 --AGGTCCTGTGCTTCTCTGCTGGTGCGCTGGGGTGGCAACCTGGG--CAGGCTTCCAT--TAGAGGAGAGGAT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5719920 58 + 108171978 --AGGCCCT--GCTTCCCTGCCAGTGG--------GGCAGTCTGGA--CAAGCTTCCAT--CAGAGTAGAGGAT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5083607 58 - 6317780 --AGGCCCT--GCTTTCCTGCTGGTGG--------GGCGGTCTGGG--CAAGCTTCCGT--CAGAGGAGAGGAT i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82821021 52 + 104043685 --AGGTCTT--GCTTTT-------------GAAGAGGTAGTCTGG---CAAGCTTCCAT--TAGAAGAAAGGTG i mm10.chr15 C 0 C 0 s canFam3.chr10 46091970 58 - 69331447 --GAATTCCCTGCTTCTCTGC---------AGGGTGGCTAATTGAG--GAAGCCTCCTT--GGGAGAAGAAGA- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 65246 70 + 1056298 GTAGCCCCTGCTCTCTCAGTCTGCAGTGGGAGCAGGACGGTCTGGG--CTACCTTCTACTGTAGAGGAGATG-- i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36295622 426 - 42659167 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=287870.000000 s hg38.chr22_GL383582v2_alt 84279 52 + 162811 GTTCCAGT---GCTCTATGGCCCCTTCCAAAAAATCCCAA-CCATATTGCCTGAAC s panTro5.chr22 28864620 52 + 37823149 GTTCCAGT---GCTCTATGGCCCCTTCCAAAAAATCCCAA-CCATATTGCCTGAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139236 52 + 50109623 GTTCCAGT---GCTCTATGGCCCCTTCCAAAATATCCCAA-CCATATTGCCTGAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161517 52 + 4464012 GTTCCAGT---GCTCTATGGCCCCTTCCAAAGAATCCCAA-CCATATTGCCTGAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657667 52 - 115148730 GTTCCAGT---GCTCTATGGCCCCTTCCAAAGATTCCCAA-CCATATTGCCTGAAC i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1955294 53 - 2117846 GTTCCAGT---GCTCTATGGCCCCTTCCACAGAATCCCACCCCATACCACCTGAAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869184 53 - 16357246 GTTCCAGT---GCCCTATGGCCCCTTCCAAAGAATCCCAACCCATACTACCTGAAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352322 53 - 1807191 GTTCCAGT---GCCCTATGGCCCTTTCCAAAGAATCCCAACCCATACCACCTGAAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32304 53 + 5963231 GCTCCAGT---GCCCTATGACCCCTTCCAAAGAATCCCAACCCATATCACCTGAAC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5719978 52 + 108171978 GTCCCAGT---GCCCCATGGCCCTTTCCAAAGAATCCCAA-CCACACTGCCTGAAC i micMur3.chr7 C 0 I 24 s proCoq1.NW_012136747v1 5083665 52 - 6317780 GTCCTAGC---GTCCCATGGCCCTTTCCAAAGAATCCCAA-CCACACTGCCTGAAC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36296048 52 - 42659167 gtgccact---cATCCACTGCCCTTTCTAAAGAATCCCAA-CCACACTGCTTGAAC i otoGar3.GL873526 I 426 C 0 s mm10.chr15 82821073 42 + 104043685 TTCCCAGT---G---------CCCTTCCTAAGAAT-CTAA-CCATACTGCCTGAGC i mm10.chr15 C 0 C 0 s canFam3.chr10 46092028 43 - 69331447 -----------GCCCTGT-GCATCTCCTAGAGAACCCCAA-CCTTACTGCCTGAGC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 65316 48 + 1056298 GTTTCGGGAAAGGCTTGCATCCCTTTCCA-AGAATCCCAC-CGACACTAC------ i dasNov3.JH570235 C 0 C 0 e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=103012.000000 s hg38.chr22_GL383582v2_alt 84331 23 + 162811 TTGGGTTGAGGAGGGTAGCTCTA s panTro5.chr22 28864672 23 + 37823149 TTGGATTCAGGAGGGTAGCTCTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139288 23 + 50109623 TTGGATTCAGGAGGGTAGCTCTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161569 23 + 4464012 TTGGATTGAGGAGGGTAGCTCTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657719 23 - 115148730 TTGGATTGATGAGGGTATCTCTA i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1955347 23 - 2117846 GTGAATTGATGAAGGTAGCTCTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869237 23 - 16357246 ATGGATTGATGAGGGTAGCTCTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352375 23 - 1807191 ATGGATTGATGAGGGTAGCTCTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32357 23 + 5963231 ATGGATTTATAAGGGTAGCTCTA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5083717 22 - 6317780 -CTGATTGATCAAGGTGGCTCTA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36296100 18 - 42659167 -----CTGATCAAGGTGGCTCTA i otoGar3.GL873526 C 0 I 110 s mm10.chr15 82821115 18 + 104043685 -----TTCATTAAGGTAGCTCTT i mm10.chr15 C 0 C 0 s canFam3.chr10 46092071 18 - 69331447 -----TTGACCAAAGTGGGGCTA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 65364 23 + 1056298 TCAAGTTGATCAAGGTGGCTCTA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5720030 24 + 108171978 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=51318.000000 s hg38.chr22_GL383582v2_alt 84354 9 + 162811 AGCctgtgc s panTro5.chr22 28864695 9 + 37823149 AGCctgtgc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139311 9 + 50109623 AGCctgtgc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161592 9 + 4464012 AGCctgtgc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657742 9 - 115148730 AGTctgtgc i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1955370 9 - 2117846 AGCCTGTGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869260 9 - 16357246 AGCctgtgc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352398 9 - 1807191 AGCctgtgc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32380 9 + 5963231 AGCCTTTGC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5083739 9 - 6317780 CACctgtgc i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82821133 9 + 104043685 AGTCTTATC i mm10.chr15 C 0 C 0 s canFam3.chr10 46092089 9 - 69331447 AGCCTGTGC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 65387 9 + 1056298 AGCctgtgc i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36296118 110 - 42659167 I e micMur3.chr7 5720030 24 + 108171978 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=174020.000000 s hg38.chr22_GL383582v2_alt 84363 27 + 162811 tgttcagccactagccatacatggcca s panTro5.chr22 28864704 27 + 37823149 tgttcagccactagccatacatggcca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139320 27 + 50109623 tgttcagccactagccatacatggcca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161601 27 + 4464012 tgttcagccactagccatacatggcca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657751 27 - 115148730 tgttcagccactagccatacatggcca i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1955379 27 - 2117846 TGTTCAGCCATTAGCCATACATGGCCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869269 27 - 16357246 tgttcagccactagccatacatggcca i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352407 27 - 1807191 tgttcagccactagccatacatggcca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32389 27 + 5963231 TGTTCagccactagccatacatggcca i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5720054 27 + 108171978 TGTTCagccactaactatacatggcca i micMur3.chr7 I 24 C 0 s proCoq1.NW_012136747v1 5083748 27 - 6317780 tgttcagccactagctacacatggcca i proCoq1.NW_012136747v1 C 0 I 393 s mm10.chr15 82821142 22 + 104043685 -----TGTCATGAGTCATACACAGCTA i mm10.chr15 C 0 C 0 s canFam3.chr10 46092098 27 - 69331447 TTTCCAGCTGTTAGCCACATATGGACA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 65396 27 + 1056298 tgcccagtccctagccacatgtgacaa i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36296118 110 - 42659167 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=55600.000000 s hg38.chr22_GL383582v2_alt 84390 14 + 162811 cttaagtttacatt----------------- s panTro5.chr22 28864731 14 + 37823149 cttaagtttacatt----------------- i panTro5.chr22 C 0 I 2 s panPan2.chr22 41139347 14 + 50109623 cttaagtttacatt----------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161628 14 + 4464012 cttaagtttaaatt----------------- i gorGor5.CYUI01015375v1 C 0 I 4 s nomLeu3.chr7b 106657778 14 - 115148730 cttaagtttaaatt----------------- i nomLeu3.chr7b C 0 I 2 s calJac3.chrUn_GL286373 1955406 14 - 2117846 CTTaagttaaaatt----------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869296 14 - 16357246 cttaagtgaaaatt----------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352434 14 - 1807191 cttaggttaaaatt----------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32416 14 + 5963231 cttaagttaaaatt----------------- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5720081 11 + 108171978 ---aagtttaaatt----------------- i micMur3.chr7 C 0 I 1 s mm10.chr15 82821164 14 + 104043685 TTTGACtttaaatt----------------- i mm10.chr15 C 0 I 1 s canFam3.chr10 46092125 14 - 69331447 CATAAATTTAAGTT----------------- i canFam3.chr10 C 0 I 242 s dasNov3.JH570235 65423 31 + 1056298 tttaagtttaaattactttaactttcaaaat i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5083775 393 - 6317780 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=19994.000000 s hg38.chr22_GL383582v2_alt 84404 5 + 162811 aaaaa- s panTro5.chr22 28864747 5 + 37823149 aaaaa- i panTro5.chr22 I 2 C 0 s panPan2.chr22 41139361 4 + 50109623 -aaaa- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161646 5 + 4464012 aaaaa- i gorGor5.CYUI01015375v1 I 4 C 0 s nomLeu3.chr7b 106657794 5 - 115148730 gaaaa- i nomLeu3.chr7b I 2 C 0 s calJac3.chrUn_GL286373 1955420 4 - 2117846 -aaaa- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869310 4 - 16357246 -caaa- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352448 4 - 1807191 -aaaa- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32430 4 + 5963231 -aaaa- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5720093 4 + 108171978 -aaaa- i micMur3.chr7 I 1 C 0 s mm10.chr15 82821179 4 + 104043685 -aaaa- i mm10.chr15 I 1 I 130 s canFam3.chr10 46092381 5 - 69331447 aaaaa- i canFam3.chr10 I 242 C 0 s dasNov3.JH570235 65454 5 + 1056298 -aaaat i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5083775 393 - 6317780 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=104472.000000 s hg38.chr22_GL383582v2_alt 84409 24 + 162811 aaaaaa-----ttcatttcct-----------------cagtccca s panTro5.chr22 28864752 24 + 37823149 aaaaaa-----ttcatttcct-----------------cagtccca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139365 24 + 50109623 aaaaaa-----ttcatttcct-----------------cagtccca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161651 24 + 4464012 aaaaaa-----ttcatttcct-----------------cagtccca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657799 24 - 115148730 aaaaaa-----ttcatttcct-----------------cagtccca i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1955424 24 - 2117846 aaaaaa-----ttaatttcct-----------------ctgtccca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869314 26 - 16357246 aaaaaa---atttcatttcct-----------------cagtccca i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352452 24 - 1807191 aaaaaa-----ttcatttcct-----------------cagtccca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32434 28 + 5963231 aaaaaaaaaaattcatttcct-----------------ca-tctca i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5720097 24 + 108171978 aaaaat-----ttcatttcct-----------------cagttcca i micMur3.chr7 C 0 I 357 s mm10.chr15 82821313 41 + 104043685 agagaa-----tccctgtcttgaaaacacaCATATGAAcactccca i mm10.chr15 I 130 I 12 s canFam3.chr10 46092386 24 - 69331447 aaaaaa-----attagttcct-----------------cattccca i canFam3.chr10 C 0 I 12 s dasNov3.JH570235 65459 24 + 1056298 aaacaa-----ttcagttcct-----------------tggtcgca i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5083775 393 - 6317780 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=294365.000000 s hg38.chr22_GL383582v2_alt 84433 77 + 162811 ------------ctagcactcaatgatcacatctggtttgtggttaccacattgg------agagtgctgagctagagcgtttccatcattgcag s panTro5.chr22 28864776 77 + 37823149 ------------ctagcactcaatgatcacatctggtttgtggttaccacattgg------agagtgctgagctagagtgtttccatcattgcag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139389 77 + 50109623 ------------ctagcactcaatgatcacatctggtttgtggttaccacattgg------agagtgctgagctagagtgtttccatcattgcag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161675 77 + 4464012 ------------ctagcactcaatgatcacatctggtttgtggttaccacattgg------agagtgctgagctagagcgtttccatcactgcag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657823 77 - 115148730 ------------ctagcactcaatggtcacatctggtttgtggttaccacattgg------agagtgcagagctagagcgtttccatcattgcag i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1955448 76 - 2117846 ------------ctaggactcaatggtcacatctggtttgtggttaccacattgg------agagtgcagagctaaagcgtttccatcactgca- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869340 76 - 16357246 ------------ctaggactcaatggtcacacctggtttgtggttaccacattgg------agagtgcagagctaaagcatttacatcactgca- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352476 76 - 1807191 ------------ctaggactcaatggtcatatctggtttgtggttaccacattgg------agagtgcagagctaaagcgttttcatcactgca- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32462 76 + 5963231 ------------ctaggactcaatggtcacatctggtttgtggttaccacattgg------agagtgcagaactaaagcgtttccatcactgca- i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82821366 81 + 104043685 ------------caagtactcaacagtcatatat-gtctgcagataccaccacggactagaaaagtgtacagttattgtg-taccattactgagg i mm10.chr15 I 12 C 0 s canFam3.chr10 46092422 77 - 69331447 ------------taagcactcagtggtaacacaaggcttgtggctactgtgctgg------agactgcagaactagaacattcccattatggcag i canFam3.chr10 I 12 C 0 s dasNov3.JH570235 65483 88 + 1056298 acagccacatttcaagtgcttagggaccacacagggcttat-gttaccatgttgg------agagggcagatacagagcatttccagccctgcag i dasNov3.JH570235 C 0 I 252 e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5083775 393 - 6317780 I e micMur3.chr7 5720121 357 + 108171978 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=31454.000000 s hg38.chr22_GL383582v2_alt 84510 17 + 162811 tatgttAGGCTGAGCTT s panTro5.chr22 28864853 17 + 37823149 tatgttAGGCTGAGCTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139466 17 + 50109623 tatgttAGGCTGAGCTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161752 17 + 4464012 tatgttAGGCTTAGCTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657900 17 - 115148730 aatgttAAGCTGAGCTT i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1955524 11 - 2117846 ------aaGCTGAGCTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869416 11 - 16357246 ------aaGCTGGGCTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352552 11 - 1807191 ------aaGCTGAGCTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32538 11 + 5963231 ------aaGCTGGGCTT i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82821447 17 + 104043685 aatgttctagtgagcag i mm10.chr15 C 0 C 0 s canFam3.chr10 46092499 17 - 69331447 agagtcctcctgagcag i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 65571 252 + 1056298 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5083775 393 - 6317780 I e micMur3.chr7 5720121 357 + 108171978 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=691903.000000 s hg38.chr22_GL383582v2_alt 84527 222 + 162811 TGCTGCTTGA-CATCTT-AGAAGCTGGA-CCAGAAGGCAGGCTATCAGC---AGAACGG-GGGCAGCCTC------------CAGG-----------GGG---------GCCCTTGC-------------------------------T--------------------------------------------------GAAGTGTGCTCGGGTGG------GATGTGG-CACCGGCCTGTCA-----GCACACCCTAA-TGTGTCCCTGAACACAGCCTCAGT--GGGGGACCACTTCTTACCCAGCTGCGAACTGGGAGAGCCAAAACTCACAGTATTCCCAATATAAAACTAAC s panTro5.chr22 28864870 223 + 37823149 TGCTGCTTGA-CATCTT-AGAAACTGGA-CCAGAAGGCAGGCTATCAGC---AGAACGG-GGGCAGCCTC------------CAGG-----------GGG---------GCCCTTGC-------------------------------T--------------------------------------------------GAAGTGTGCTCGGGTGG------GATGTGG-CACCGGCCTGTCA-----GCACACCCTAA-TGTGTCCCTGAACACAGCCTCAGTG-GGGGGACCACTTCTTACCCAGCTGCGAACTGGGAGAGCCAAAACTCACAGTATTCCCAATATAAAACTAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139483 223 + 50109623 TGCTGCTTGA-CATCTT-AGAAACTGGA-CCAGAAGGCAGGCTATCAGC---AGAACGG-GGGCAGCCTC------------CAGG-----------GGG---------GCCCTTGC-------------------------------T--------------------------------------------------GAAGTGTGCTCGGGTGG------GATGTGG-CACCGGCCTGTCA-----GCACACCCTAA-TGTGTCCCTGAACACAGCCTCAGTG-GGGGGACCACTTCTTACCCAGCTGCGAACTGGGAGAGCCAAAACTCACAGTATTCCCAATATAAAACTAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161769 223 + 4464012 TGCTGCTTGA-CATCTT-AGAAACTGGA-CCAGAAGGCAGGCTATGAGC---AGAACGG-GGGCAGCCTC------------CAGG-----------GGG---------GCCCTTGC-------------------------------T--------------------------------------------------GAAGTGTGCTCGGGTGG------GATGTGG-CACCGGCCTGTCA-----GCACACCCTAA-TGTGTCCCTGAACACAGCCTCAGTG-GGGGGACCACTTCTTACCCAGCTGCAAACTGGGAGAGCCAAAACTCACAGTATTCCCAATATAAAACTAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106657917 224 - 115148730 TGCTGCTTGA-CATCTT-AGAAACTGGA-CCAGAAGGCAGGCTATGAGC---AGAACGG-GGGCAGCCTC------------CAGG-----------GGG---------GCCCTTGC-------------------------------T--------------------------------------------------GAAGTGTGCTTGGGTGG------GATGTGG-CACCTGCCTGTCC-----ACACACCCTAACTGTATCCCTGAACACAGCCTCAGTG-GGGGGACCACTTCTTACCTAGCTGCGAACTGGGAAAGCCAAAACTCATAGTATTCCCAATATAAAACTAAC i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1955535 228 - 2117846 TGCTGCCTGA-CATCTT-AGAAACTGGA-CTAGAAGGTAGGCTATGAACC-AAGAGCAG-GGGCAACCTC------------CAGGG---------AGGG---------GCCCTTGC-------------------------------T--------------------------------------------------GAAGTGTGCTTGGGTGG------GATGTGG-TACCTGCCTGTCCTGTCTGCTCACCCTAA-TGTATCCCTGAACACAGCCTCAGTG-GGGAGACCACTTCTTACCCAGGTGCCAACTGGGAGAGTCAACACTCAAAGTATTCCCAATATAA----AAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869427 227 - 16357246 TGCTGCCTCA-CATCTT-AGAAACTGGA-CTACGAGGCAGGCTATGAACC-AAGAGCAG-GGGCAACCTC------------CAGGG----------GGG---------GCCCTTGC-------------------------------T--------------------------------------------------GAAGTGTGCTTGGGTGG------GATGTGG-TACCTGCCTGTCCTGTCTGCTCACCCTAA-TGTATCCCTGAACACAGCCTCCGTG-GGGAGACCACTTCTTACCCAGCTGCCAACTGGGAGAGTCAACACATAAAGTATTCCCAATATAG----AAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352563 234 - 1807191 TGCTGCCTGA-CATCTT-AGAAACTGCA-CTAGAAGGCAGGCTATGAACC-AAGAGCAG-GGACAACCTC------------CGGGG---------TGGGGGAGGGGACGCCCTTGC-------------------------------T--------------------------------------------------GAAGTGTGCTTGGGTGG------GATGTGG-TACCTGCCTGTCCTGTCTGCTCACCCTCA-TGTATCCCTGAACACAGCCTCAGTT-GGGAGACCACTTCTTACCCAGCTGCCAACTGGGAGAGTCAACACTCAAAGTATTCCCAATATAA------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32549 228 + 5963231 TGCTGCCTGA-CATCTT-AGAAACTGGA-CTAGAAGGCAGGCTATGAACC-AAGAGCAG-AGGCAACCTC------------CGGTG---------GGGG---------ACCCTTAC-------------------------------T--------------------------------------------------GAAGTGTGCTTGGATGG------GATGTGG-TACCTGCCTGTCCTGTCTGCTCACCCTAA-TGTATCCCTGAACACAGCCTCAGTG-GGGAGACCACTTCTTTCCCAGCTGCCAACTGGGAGAGTCAACACTCAAAGTACTCCCAATATAA----AAC i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82821464 261 + 104043685 tg-TGCTTTA-CACCTG-AGAAACTGTA-CCAGAAAGTAGACTGGGAGC-------CAG-GAGCAGCATC----------GACAGGGCCTTGCTGTTGGG---------AACCTGGCTATTTACACAGCTGATACTTGAGGATACAAAT--------------------------------------------------GGAGTATGGCTGGAGTC------AAAGTGGTTACCTATCTAGGT-----ATGCAAGCT---TCTGTTTCTGAACACAGTGTCTATATGGGAGACCATTGCTTACCCAGCCACTGACTAAGATAGTCAATTATTGTACAATACCCCATTCAAAAC-AAC i mm10.chr15 C 0 C 0 s canFam3.chr10 46092516 234 - 69331447 cactgCTTAATCACTCA-AGAAACTG---CCAGGAGTCTGGTCCCTAAC-------TTG-GGCTGGTACCCCAGTGTGCAGACAGG-----------GGG---------TGCATTAA-------------------------------T--------------------------------------------------GTGGGGAGGTGGAAGGGGAACGAGATGAGGTCACCTGCCTGCCA-------CTAACCAGA-TGTGT--CTGAACAAAGCCTTAGTGCAGGAGACCACCTCTTACCAGGCCACTGACTGGGAGAGCCAAGTCTTGCAGTATTCTCTGTATAAAATTATA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 65823 272 + 1056298 TGCTACTTAT-TCCCTTGAGAAACTGTAGCAAGAAGGCAAGTGGTAAAGCTGGGAGCAGAGGGCAGCCTC------------CAAGG----------TGG---------GCCCTTGC-------------------------------TGCTGTGGGCCTGGTCCCCAACATGGTTGGGTGCCCCACTGTGCGCACAGGGGAGTGTACCCAGGTGG------CACGTGGTTACCCACCTGCCT-----GTTCACC-----TGCTT--CTGAGCATAGCCTCAGTG-AGGGGACA---TATTACCCAGATGCAAACTGGGAAGGCCAATTCTTGAGGGACTCACTATATAAAACCAAC i dasNov3.JH570235 I 252 I 8 e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5083775 393 - 6317780 I e micMur3.chr7 5720121 357 + 108171978 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=7819.000000 s hg38.chr22_GL383582v2_alt 84749 12 + 162811 AATCA--ACCATAA s panTro5.chr22 28865093 12 + 37823149 AATCA--ACCATAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139706 12 + 50109623 AATCA--ACCATAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3161992 10 + 4464012 AAACA--ACCAT-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658141 12 - 115148730 AATCA--ACCATAA i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1955763 11 - 2117846 AATAA--ACCAT-A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869654 11 - 16357246 AATAA--ACCAG-A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352797 11 - 1807191 AATAA--ACCAT-A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32777 11 + 5963231 AATAA--ACCAT-A i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82821725 8 + 104043685 ACCCC--CCC---- i mm10.chr15 C 0 C 0 s canFam3.chr10 46092750 12 - 69331447 AATAACTGCCAC-- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 66095 8 + 1056298 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5083775 393 - 6317780 I e micMur3.chr7 5720121 357 + 108171978 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=4095.000000 s hg38.chr22_GL383582v2_alt 84761 1 + 162811 A s panTro5.chr22 28865105 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139718 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162002 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658153 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1955774 1 - 2117846 A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869665 1 - 16357246 A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352808 1 - 1807191 A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32788 1 + 5963231 A i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5720478 1 + 108171978 A i micMur3.chr7 I 357 C 0 e mm10.chr15 82821733 0 + 104043685 C e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092762 0 - 69331447 C e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5083775 393 - 6317780 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=77902.000000 s hg38.chr22_GL383582v2_alt 84762 14 + 162811 AAAACTTAATACTT s panTro5.chr22 28865106 14 + 37823149 AAAACTTAATACTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139719 14 + 50109623 AAAACTTAATACTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162003 14 + 4464012 AAAACTTAATACTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658154 14 - 115148730 AAAACTTAATACTT i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1955775 14 - 2117846 AAAACTTAGTACTT i calJac3.chrUn_GL286373 C 0 I 301 s saiBol1.JH378157 8869666 14 - 16357246 AAAACTTAATACTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352809 10 - 1807191 AAA----AATACTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32789 14 + 5963231 AAAACTTAATACTT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5720479 14 + 108171978 AAAACTTAATACTT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5084168 14 - 6317780 AAAACTTAACACTT i proCoq1.NW_012136747v1 I 393 C 0 s mm10.chr15 82821733 13 + 104043685 -CAACTTGACACTT i mm10.chr15 C 0 C 0 s canFam3.chr10 46092762 13 - 69331447 -AAACCTAATACTT i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 66095 8 + 1056298 I e otoGar3.GL873526 36296118 110 - 42659167 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=71232.000000 s hg38.chr22_GL383582v2_alt 84776 12 + 162811 AAAAATCCTCAT s panTro5.chr22 28865120 12 + 37823149 AAAAATCCTCAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139733 12 + 50109623 AAAAATCCTCAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162017 12 + 4464012 AAAAATCCTCAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658168 12 - 115148730 AAAAATCCTCAT i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1956090 12 - 2117846 aaaaaTCCTCAT i calJac3.chrUn_GL286373 I 301 C 0 s saiBol1.JH378157 8869680 12 - 16357246 AAAGATCCTCCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352819 12 - 1807191 AAAAATCCTCAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32803 12 + 5963231 AAAAATCCTCAT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5720493 12 + 108171978 AAAAATCCTCAT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5084182 12 - 6317780 AAAAATCCTCAT i proCoq1.NW_012136747v1 C 0 I 240 s mm10.chr15 82821746 12 + 104043685 GGGAATCCCCAT i mm10.chr15 C 0 C 0 s canFam3.chr10 46092775 12 - 69331447 ACACATCTTCAT i canFam3.chr10 C 0 I 70 e dasNov3.JH570235 66095 8 + 1056298 I e otoGar3.GL873526 36296118 110 - 42659167 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=7801.000000 s hg38.chr22_GL383582v2_alt 84788 3 + 162811 ATA s panTro5.chr22 28865132 3 + 37823149 ATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139745 3 + 50109623 ATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162029 3 + 4464012 ATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658180 3 - 115148730 ATA i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1956102 3 - 2117846 ATG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869692 3 - 16357246 ATG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352831 3 - 1807191 ATG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32815 3 + 5963231 ATG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5720505 3 + 108171978 TTA i micMur3.chr7 C 0 C 0 s mm10.chr15 82821758 3 + 104043685 TTA i mm10.chr15 C 0 I 2571 e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=36261.000000 s hg38.chr22_GL383582v2_alt 84791 9 + 162811 TAgctgggc s panTro5.chr22 28865135 9 + 37823149 TAgctgggc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139748 9 + 50109623 TAgctgggc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162032 9 + 4464012 TAgctgggc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658183 9 - 115148730 TAgctgggc i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1956105 9 - 2117846 TAgctgggc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869695 9 - 16357246 TAgctggac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1352834 9 - 1807191 TAgctgggc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32818 9 + 5963231 TAgctgggc i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5720508 9 + 108171978 GAGCTGGgc i micMur3.chr7 C 0 I 207 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=309934.000000 s hg38.chr22_GL383582v2_alt 84800 102 + 162811 ataatggtacatgcctgtattcccagctagttgggaggatcgcttgagcctaagagtttgagtccagcctgggcaacacagtgagaccctgtctcaaaaaaa s panTro5.chr22 28865144 102 + 37823149 ataatggtacatgcctgtattcccagctagttgggaggatcgcttgagcctaagagtttgagtccagcctgggcaacacagtgagaccctgtctcaaaaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139757 102 + 50109623 ataatggtacatgcctgtattcccagctagttgggaggatcgcttgagcctaagagtttgagtccagcctgggcaacacagtgagaccctgtctctaaaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162041 102 + 4464012 ataatggcacatgcctgtattcccagctagttgggaggatcgcttgagcctaagagtttgagtccagcctgggcaacacagtgagaccctgtctcaaaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658192 102 - 115148730 ataatggtacatgcctgtattcccagctacttgggaggatcgcttgagcctaagactttgagtccagcctgggcaacacagtgagaccctgtctcaaaaaaa i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1956114 102 - 2117846 atgatggcacatgcctgtattcccagctacttggaaggatcgcttgagtccaagagtctgagtctaacctgggcaacatagttagaccctgtcacaaaaaaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869704 102 - 16357246 atgatggcacatgcctgtattcccagctacttggaaggatcgcttgagtccaagagtctgagtctagcctgggcaacatagttaaaccctgtctcaaaaaaa i saiBol1.JH378157 C 0 I 2 s cebCap1.NW_016107750v1 1352843 102 - 1807191 atgatggcacatgcctgtattcccagctacttggaaggatcgcttgagtccaggagtctgagtatagcctgggcaacatagttagaccctgtctcaaaaaaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 32827 102 + 5963231 atgatggcacatgcctgtattcccagctacttggaaggatcacttgagtccaagagtctgagtctagcctgggcaacatagttagaccctgtctcaaaaaaa i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720517 207 + 108171978 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=1050.000000 s hg38.chr22_GL383582v2_alt 84902 1 + 162811 a s panTro5.chr22 28865246 1 + 37823149 a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139859 1 + 50109623 a i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162143 1 + 4464012 T i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658294 1 - 115148730 a i nomLeu3.chr7b C 0 I 17 s calJac3.chrUn_GL286373 1956216 1 - 2117846 a i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1352945 1 - 1807191 a i cebCap1.NW_016107750v1 C 0 I 20 s aotNan1.NW_018512383v1 32929 1 + 5963231 a i aotNan1.NW_018512383v1 C 0 I 23 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720517 207 + 108171978 I e saiBol1.JH378157 8869806 2 - 16357246 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=363990.000000 s hg38.chr22_GL383582v2_alt 84903 314 + 162811 TTTTTTTTTTTTTCACTTAAAAGCCATTTTCTTggccaggcgcggtggctcacgcctgtaatcccagcactttggggggccaaggtgggcagatcacaaggtcaggagatcgagaccatcccggctaac-acggtgaaaccccgtctctactaaaaacagaaaaaattagccgggcgtggcggcgggcgcctgtagtcccagctgctggggcggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagtcggggcaac-acagcgagactctgtctc s panTro5.chr22 28865247 313 + 37823149 -aTTTTTTTTTTTCACTTAAAAGCCATTTTCTTggccgggcgtggtggctcacgcctgtaatcccagcactttggggggccgaggtgggcagatcacaaggtaaggagatcgagaccatcctggctaac-acggtgaaaccccgtctctactaaaaacagaaaaaattagccgggcgtggcggcaggcgcctgtagtcccagctgctggggcggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagtctgggcaac-acagcgagactctgtctc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41139860 309 + 50109623 -----aTTTTTTTCACTTAAAAGCCATTTTCTTggccgggcgtggtggctcacgcctgtaatcccagcactttggggggccgaggtgggcagatcacaaggtcaggagatcgagaccatcctggctaac-acggtgaaaccccgtctctactaaaaacagaaaaaattagccgggcatggcggcaggcgcctgtagtcccagctgctggggcggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagtctgggcaac-acagcgagactctgtctc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162144 309 + 4464012 ----TTTTTTTTTCACTTAAAACCCATTTTCTTggccaggcgcggtggctcacgcctgtaatcccagcacttt-gggggccgaggtgggcagatcacaaggtcaggagatcgagaccatcctggctaac-acggtgaaaccccgtctctactaaaaacagaaaaagtcagccgggcgtggcggcgggcgcctgtagtcccagctgctggggcagctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagttagccgagatcgcgccactgcactccagtctgggcaac-acagcgagactctgtctc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658312 314 - 115148730 tttttttttttttCACTTAAAAGCCATTTTCTTggccgggcgcagtggctcacgcctgtaatcccagcacttcggggggccgaggcaggtggatcacaaggtcaggaaatcgaggccatcctggctaac-atggtgaaaccccgtctctactaaaaatagaaaaaattagccgggcgtggcggcaggcacctgtggtcccatctgctggggtggctgaggcaggaaaacggcgtgaacccgggaggcagagcttgcagtgagccgagatcgcaccactgcactccagcctgggcgac-acagtgagacaccgtctc i nomLeu3.chr7b I 17 C 0 s calJac3.chrUn_GL286373 1956217 293 - 2117846 -----------------aaaaaaTCA-----CCAgccgggcgcagtggctcacgcctataatcccagcactttgggaggctgaggtgggtggatcacgaggtcaagagatcgagaccatcctggtcaacaaaggtgaaaccccgtctctactaaaaatacaaaaa-ttagctgggcatgatggcgtgtgcctgtagtcccagctactcaggaggttgaggcaggagaactgcttgaacccaggaggtggaggttgcggtgagccgagatcgcgccattgcactccagactgggtaacaacagcgaaactccatctc i calJac3.chrUn_GL286373 C 0 C 0 e aotNan1.NW_018512383v1 32930 23 + 5963231 I e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720517 207 + 108171978 I e cebCap1.NW_016107750v1 1352946 20 - 1807191 I e saiBol1.JH378157 8869806 2 - 16357246 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e chlSab2.chr19 24707367 10 + 33263144 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e macFas5.chr10 87618709 3 - 96509753 I e rheMac8.chr10 84273696 13 + 92844088 I a score=5096.000000 s hg38.chr22_GL383582v2_alt 85217 2 + 162811 aa s panTro5.chr22 28865560 2 + 37823149 aa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140169 2 + 50109623 aa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162453 2 + 4464012 aa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658626 2 - 115148730 aa i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87618712 2 - 96509753 aa i macFas5.chr10 I 3 I 1 s chlSab2.chr19 24707377 2 + 33263144 aa i chlSab2.chr19 I 10 I 1 s calJac3.chrUn_GL286373 1956510 2 - 2117846 aa i calJac3.chrUn_GL286373 C 0 C 0 e aotNan1.NW_018512383v1 32930 23 + 5963231 I e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720517 207 + 108171978 I e cebCap1.NW_016107750v1 1352946 20 - 1807191 I e saiBol1.JH378157 8869806 2 - 16357246 I e colAng1.NW_012115588v1 924776 6 + 1946073 I e manLeu1.NW_012102031v1 13981540 10 - 14338769 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e rheMac8.chr10 84273696 13 + 92844088 I a score=5504.000000 s hg38.chr22_GL383582v2_alt 85219 5 + 162811 -aaaac s panTro5.chr22 28865562 5 + 37823149 -aaaac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140171 5 + 50109623 -aaaac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162455 5 + 4464012 -aaaac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658628 5 - 115148730 -aaaaa i nomLeu3.chr7b C 0 I 8 s macFas5.chr10 87618715 4 - 96509753 -aaaa- i macFas5.chr10 I 1 C 0 s chlSab2.chr19 24707380 4 + 33263144 -aaaa- i chlSab2.chr19 I 1 C 0 s manLeu1.NW_012102031v1 13981550 4 - 14338769 -aaaa- i manLeu1.NW_012102031v1 I 10 C 0 s colAng1.NW_012115588v1 924782 4 + 1946073 -AAAA- i colAng1.NW_012115588v1 I 6 C 0 s calJac3.chrUn_GL286373 1956512 5 - 2117846 aaaaa- i calJac3.chrUn_GL286373 C 0 I 1 e aotNan1.NW_018512383v1 32930 23 + 5963231 I e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720517 207 + 108171978 I e cebCap1.NW_016107750v1 1352946 20 - 1807191 I e saiBol1.JH378157 8869806 2 - 16357246 I e cerAty1.NW_011999588v1 4077333 5 - 4483953 I e macNem1.NW_012012688v1 7110545 11 - 13098629 I e rheMac8.chr10 84273696 13 + 92844088 I a score=38188.000000 s hg38.chr22_GL383582v2_alt 85224 6 + 162811 aaaaaa s panTro5.chr22 28865567 5 + 37823149 -aaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140176 3 + 50109623 ---aaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162460 4 + 4464012 --aaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658641 6 - 115148730 aaaaaa i nomLeu3.chr7b I 8 C 0 s rheMac8.chr10 84273709 6 + 92844088 aaaaaa i rheMac8.chr10 I 13 C 0 s macFas5.chr10 87618719 6 - 96509753 aaaaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110556 6 - 13098629 aaaaaa i macNem1.NW_012012688v1 I 11 C 0 s cerAty1.NW_011999588v1 4077338 6 - 4483953 AAAAAA i cerAty1.NW_011999588v1 I 5 C 0 s chlSab2.chr19 24707384 6 + 33263144 aaaaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981554 6 - 14338769 aaaaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 924786 6 + 1946073 AAAAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1956518 6 - 2117846 aagaaa i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8869808 6 - 16357246 aaaaaa i saiBol1.JH378157 I 2 C 0 e aotNan1.NW_018512383v1 32930 23 + 5963231 I e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720517 207 + 108171978 I e cebCap1.NW_016107750v1 1352946 20 - 1807191 I a score=9555.000000 s hg38.chr22_GL383582v2_alt 85230 1 + 162811 a s panTro5.chr22 28865572 1 + 37823149 a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140179 1 + 50109623 a i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162464 1 + 4464012 a i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658647 1 - 115148730 a i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84273715 1 + 92844088 a i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87618725 1 - 96509753 a i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110562 1 - 13098629 a i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4077344 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24707390 1 + 33263144 a i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981560 1 - 14338769 a i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 924792 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1956524 1 - 2117846 a i calJac3.chrUn_GL286373 C 0 I 9 s saiBol1.JH378157 8869814 1 - 16357246 a i saiBol1.JH378157 C 0 I 9 s aotNan1.NW_018512383v1 32953 1 + 5963231 A i aotNan1.NW_018512383v1 I 23 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720517 207 + 108171978 I e cebCap1.NW_016107750v1 1352946 20 - 1807191 I a score=940031.000000 s hg38.chr22_GL383582v2_alt 85231 108 + 162811 aaaaGCCATTTTTTTCAACTAGAAAC--AAAAC---TTTATATTACTGCTCCCC-----CTCTTTCCTGGCCACTAGACTACAGGGAAGAAAACACAATATTACGATGTAACTAGAGG s panTro5.chr22 28865573 108 + 37823149 aaaaGCCATTTTTTTCAAGTAGAAAC--AAAAC---TTTATATTACTGCTCCCC-----CTCTTTCCTGGCCACTAGACTACAGGGAAGAAAACACAATATTACGATGTAACTAGGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140180 108 + 50109623 aaaaGCCATTTTTTTCAACTAGAAAC--AAAAC---TTTATATTACTGCTCCCC-----CTCTTTCCTGGCCACTAGACTACAGGGAAGAAAACACAATATTACGATGTAACTAGGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162465 108 + 4464012 aaaaGCCATTTTCTTCAACTAGAAAC--AAAAC---TTTATATTACTGCTCCCC-----CTCTTTCCTGGCCACTAGACTACAGGGAAGAAAACACAATATTACGATGTAACTAGGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658648 108 - 115148730 aaaaGCCATTTTCTTCAACTAGAAACAGAAAAC---TTCATATTACTGCTCCCC-------CTTTCCTGGCCACTAGACTACAGGGAAGAAAACACAATATTCTGATGTAACTAGGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84273716 108 + 92844088 aaaaGCCATTTTCTTCAACTAGAAACAGAAAAC---TTTGTATTACTGGTCTCC-------CTTTCCTAGCCACTAGTCAACAGGGAATAAAACACAATATTCTGATGTAACTAGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87618726 108 - 96509753 aaaaGCCATTTTCTTCAACTAGAAACAGAAAAC---TTTGTATTACTGGTCTCC-------CTTTCCTAGCCACTAGTCAACAGGGAATAAAACACAATATTCTGATGTAACTAGGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110563 108 - 13098629 aaaaGCCATTTTCTTCAACTAGAAACAGAAAAC---TTTGTATTACTGGTCTCC-------CTTTCCTAGCCACTAGTCAACAGGGAATAAAACACAATATTCTGATGTAACTAGGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4077345 108 - 4483953 AAAAGCCATTTTCTTCAACTAGAAACAGAAAAC---TTTGTATTACTGGTCTCC-------CTTTCCTAGCCACTAGTCAACAGGGAATAAAACACAATATTCTGATGTAACTAGGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24707391 108 + 33263144 aaaaGCCATTTTCTTCAACTAGAAACAGAAAAC---TTTGTATTACTGGTCTCC-------CTTTCCTAGCCACTAGTCAACAGGGAATAAAACACAATATTCTGATGTAACTACGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981561 108 - 14338769 aaaaGCCATTTTCTTCAACTATAAACAGCAAAC---TTTGTATTACTGGTCTCC-------CTTTCCTAGCCACTAGTCAACAGGGAATAAAACACAATATTCTGATGTAACTAGGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 924793 108 + 1946073 AAAAGCCATTTTCTTCAACTAGAAACAGAAAAC---TTTGTATTACTGGTCTCC-------CTTTCCTAGCCACTAGTCTACAGGGAATGAAACACAATTTTCTGATGTAACTAGGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1956534 117 - 2117846 AAAAGCCATTTTCTTCAACTAGAAACAAAAAACTTATTTGTATTACCACCCCCCACCCCCTCTTTCCTAGTCACTAGACTACA-GGAAGAAAACACAACGTTCTGATGTAACTAAGGG i calJac3.chrUn_GL286373 I 9 C 0 s saiBol1.JH378157 8869824 110 - 16357246 ATGAGCCATTTTCTTCAACTAGGAACAAAAAACTTATTTGTATTACCACTCCTC-------CTTTCCTAGTAACTAGACTACA-GGAAGAAAACACAACGTTCTGATGTAACTAAGGG i saiBol1.JH378157 I 9 C 0 s cebCap1.NW_016107750v1 1352966 110 - 1807191 AAAAGCCATTTTCTTCAACTAGAAACAAAAAACTTATTTGTATTACCATTCCCC-------CTTTCCTAGTCACTAGACTACA-GGAAGAAAACACAACATTCTGATGTAACTAAGGA i cebCap1.NW_016107750v1 I 20 C 0 s aotNan1.NW_018512383v1 32954 110 + 5963231 AAAAGCCATTTTCTTCAACTAGAAACAAAAAAATTATTTGTATTACCACTCCCC-------CTTTCCTAGTCACTAGACTACA-GGAAGAAAACACAACATTCTGATGTAACTAAGGG i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720517 207 + 108171978 I a score=332635.000000 s hg38.chr22_GL383582v2_alt 85339 29 + 162811 TAATGAAAATGAGAAAAGGCAACTG-GTTG s panTro5.chr22 28865681 29 + 37823149 TAATGAAAATGAGAAAAGGCAACTG-GTTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140288 29 + 50109623 TAATGAAAATGAGAAAAGGCAACTG-GTTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162573 29 + 4464012 TAATGAAAATGAGAAAAGGCAACTG-GTTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658756 29 - 115148730 TAATGAAAATGAGAAAAGGCAACTG-GTTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84273824 29 + 92844088 TCACGAAAATGAGAAAAGGCAACTG-GTTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87618834 29 - 96509753 TCATGAAAATGAGAAAAGGCAACTG-GTTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110671 29 - 13098629 TCATGAAAATGAGAAAAGGCAACTG-GTTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4077453 29 - 4483953 TCATGAAAATGAGAAAAGGCAACTG-GTTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24707499 29 + 33263144 TCATGAAAATGAGAAAAGGCAACTG-GTTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981669 29 - 14338769 TCATGAAAATGAGAAAAGGCAACTG-GTTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 924901 29 + 1946073 TCATGAAAATGAGAAAAGGCAACTG-GTTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1956651 29 - 2117846 TAATGAAAATGAGAAAAGGCAACTC-GTTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869934 30 - 16357246 TAATGAAAATGAGAAAAGGCTCTTTGGTTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353076 29 - 1807191 TAATGAAAATGAGAAAAGGCAACTG-GTTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33064 29 + 5963231 TAATGAAAATGAGAAAAGGCAACTG-GTTG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5720724 29 + 108171978 TAATGAAAATGAGAAAAGGCAACTG-GTTG i micMur3.chr7 I 207 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I a score=177210.000000 s hg38.chr22_GL383582v2_alt 85368 16 + 162811 GCTCTTTTAAAAACtt s panTro5.chr22 28865710 16 + 37823149 GCTCTTTTAAAAACtt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140317 16 + 50109623 GCTCTTTTAAAAACtt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162602 16 + 4464012 GCTCTTTTAAAAACtt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658785 16 - 115148730 GCTCTTTTAAAAACTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84273853 16 + 92844088 GCTCTTTTAAAAACtt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87618863 16 - 96509753 GCTCTTTTAAAAACtt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110700 16 - 13098629 GCTCTTTTAAAAACtt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4077482 16 - 4483953 GCTCTTTTAAAAACtt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24707528 16 + 33263144 GCTCTTTTAAAAACtt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981698 16 - 14338769 GCTCTTTTAAAAACtt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 924930 16 + 1946073 GCTCTTTTAAAAACTT i colAng1.NW_012115588v1 C 0 I 1064 s calJac3.chrUn_GL286373 1956680 16 - 2117846 GCTCTTTTAAAAACTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869964 16 - 16357246 GCTCTTTTAAAAACTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353105 16 - 1807191 GCTCCTTTAAAAACtt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33093 16 + 5963231 GCTCTTTTAAAAACTT i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720753 0 + 108171978 C a score=536254.000000 s hg38.chr22_GL383582v2_alt 85384 61 + 162811 atttttatttgaacagacctgttcttgctatgttatccaggctgaacttgaactcctggcc s panTro5.chr22 28865726 61 + 37823149 atttttatttgaacagacctgttcttgctattttatccaggctgaacttgaactcctggcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140333 61 + 50109623 atttttatttgaacagacctgttcttgctattttatccaggctgaacttgaactcctggcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162618 61 + 4464012 atttttatttgaacagacctgttcttgctatgttatccaggctgaacttgaactcctggcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658801 61 - 115148730 Atttttatttgaacagacctgttcttgctatgttatccaggctgaacttgaactcctggcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84273869 60 + 92844088 -tttttatttgaacagacctgttcttgctatgttatccaggctgaacttgaactcctggcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87618879 60 - 96509753 -tttttatttgaacagacctgttcttgctatgttatccaggctgaacttgaactcctggcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110716 60 - 13098629 -tttttatttgaacagacctgttcttgctatgttatccaggctgaacttgaactcctggcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4077498 60 - 4483953 -tttttatttgaacagacctgttcttgctatgttacccaggctgaacttgaactcctggcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24707544 60 + 33263144 -tttttatttgaacagacctgttcttgctatgttatccaggctgaacttgaactcctggcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981714 60 - 14338769 -tttttatttgaacagacctgttcttgctatgttatccaggctgaacttgaactcctggcc i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1956696 61 - 2117846 Atttttatttgaacagaccagttctcgttatgtcatctaagctgaacttgaattcctggcc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8869980 56 - 16357246 AT-----TTTGAACagaccagttctcgctatgttatctaagctgaacttgaatttctggcc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353121 61 - 1807191 atttttatttgaacagaccagttctcgctatgttatctaagctgaacttgaattcctggcc i cebCap1.NW_016107750v1 C 0 I 31 s aotNan1.NW_018512383v1 33109 61 + 5963231 ACttttatttgaacggaccagttctcgctatgttatctaagctgaacttgaattcctggcc i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720753 0 + 108171978 C e colAng1.NW_012115588v1 924946 1064 + 1946073 I a score=490839.000000 s hg38.chr22_GL383582v2_alt 85445 68 + 162811 tcaagtgatcctctagcctcagcctcccgagtacctgagattacaggtgtgaaccaccatacctagTT s panTro5.chr22 28865787 68 + 37823149 tcaagtgatcctctagcctcagcctcccgagtacctgagattacaggtgtgaaccaccatacctagTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140394 68 + 50109623 tcaagtgatcctctagcctcagcctccccagtacctgagattacaggtgtgaaccaccatacctagTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162679 68 + 4464012 tcaagtgatcctctagcctcagcctcccgagtagctgagattacaggtgtgaaccaccatacctagTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658862 68 - 115148730 tcaagcgatcctctagcctcagcctcctgagtagctgagattacaggtgtgaaccaccataccTAGTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84273929 68 + 92844088 tcaagcgattctctagccttggcctcccgagtagctgagattacaggtgtgaacaaccataactagtt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87618939 68 - 96509753 tcaagcgattcgctagccttggcctcccgagtagctgagattacaggtgtgaacaaccataactagtt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110776 68 - 13098629 tcaagcgattctctagccttggcctcccgagtagctgagattacaggtgtgaacaaccataactagtt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4077558 68 - 4483953 ttaagcgattctctagccttggcctcccgagtagctgagattacaggtgtgaacaaccataactagtt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24707604 68 + 33263144 tcaagcgattctctagccttggcctcccgagtagctgagattacaggtgtgaacaaccatacctagTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981774 68 - 14338769 tcaagcgattctctagccttggcctcccgagtagctgagattacaggtgtgaacaaccataactagtt i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1956757 68 - 2117846 tcaagcagtcctctagccacagcctcctgagtagctgggattacagctgtgaaccaccatacctggTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870036 68 - 16357246 tcaagcagtcctctagccacagcctcctgagtagctgggattacagttgtgaaccaccatacctggTT i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 33170 68 + 5963231 tcaagcagtcatctggccacagcctcttgagtagctgggattacagttgtgaaccaccatacctggTT i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720753 0 + 108171978 C e cebCap1.NW_016107750v1 1353182 31 - 1807191 I e colAng1.NW_012115588v1 924946 1064 + 1946073 I a score=590237.000000 s hg38.chr22_GL383582v2_alt 85513 137 + 162811 AACTGGTTAGCTCTCtttctttttcttttgagacagagtctcgctctgttgccaggctggagtgcagtggcgtgatctcagctcactgcaac--ctccacctcccgggttcaagcgattcccctacctcagcctc-ccaa s panTro5.chr22 28865855 137 + 37823149 AACTGGTTAGCTCTCtttctttttcttttgagacagagtctcgctctgttgccaggctggagtgcagtggcgtgatctcagctcactgcaac--ctccacctcccgggttcaagcgattctcctacctcagcctc-ccaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140462 137 + 50109623 AACTGGTTAGCTCTCtttctttttcttttgagacagagtctcgctctgttgccaggctggagtgcagtggcgtgatctcagctcactgcaac--ctccacctcccgggttcaagcgattctcctacctcagcctc-ccaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3162747 136 + 4464012 AACTGGTTAG--Ctctttctttttcttttgagacagagtctcgctctgttgccaggctggagtgcagtggcgtgatctcagctcactgcaac--ctccacctcccgggttcaagcgattcccctacctcagcctcaccaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106658930 136 - 115148730 AACTGGTTAGCTCt-tttttttttcttttgagacagagtctcgctctgtcgccaggctggagtgcagtggcgtgatctcagctcactgcaac--ctccacctcccaggttcaagagattcccctacctcagcctc-ccaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84273997 133 + 92844088 aactGGTTAGCtct------ttgtttttggagatggagtctcactctgttgccaggctggagtgcagtggcgcgatctcagctcactgcaacctctccgcctcccaggttcaagcaatttccctgcctcagcctc-ccaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87619007 133 - 96509753 aactGGTTAGCtct------ttgtttttggagatggagtctcactctgttgccaggctggagtgcagtggcgcgatctcagctcactgcaacctctccgcctcccaggttcaagcaatttccctgcctcagcctc-ccaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110844 133 - 13098629 aactGGTTAGCTCt------ttgtttttggagatggagtctcactctgttgccaggctggagtgcagtggcgcgatctcagctcactgcaacctctccgcctcccaggttcaagcaatttccctgcctcagcctc-ccaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4077626 132 - 4483953 aactGGTTAGCTCt------ttgtttttggagatggagtctcactctgttgccaggctggagtgcagtggcgcgatctcagctcactgc-acctctccgcctcccgggttcaagcaatttccctgcctcagcctc-ccaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24707672 133 + 33263144 AACTGGTTAGCtct------ttgtttttggagatggagtctcactctgttgccaggctggagtgtagtggcacgatctcagctcactgcaacctctccacctcccgggttcaagcaatttccctgcctcagcctc-ccaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981842 133 - 14338769 aactGGTTAGCTCt------ttgtttttggagatggagtctcactctgttgccaggctggagtgcagtggcgcgatctcagctcactgcaacctctctgcctcccgggttcaagcaatttccctgcctcagcctc-ccaa i manLeu1.NW_012102031v1 C 0 C 0 e aotNan1.NW_018512383v1 33238 0 + 5963231 C e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720753 0 + 108171978 C e cebCap1.NW_016107750v1 1353182 31 - 1807191 I e saiBol1.JH378157 8870104 0 - 16357246 C e calJac3.chrUn_GL286373 1956825 0 - 2117846 C e colAng1.NW_012115588v1 924946 1064 + 1946073 I a score=449907.000000 s hg38.chr22_GL383582v2_alt 85650 138 + 162811 gtagctgggactacaggcacgcgccaccacacctggctaatttttcatattttagtagtgacagggtttcaccatgttggccaggctggtctcaatctcctgaccttgtgatccgcccacttcggcctcccaaagtga s gorGor5.CYUI01015375v1 3162883 138 + 4464012 gtagctgggactacaggcatgcaccaccacacctggctaatttttcgtattttagtagtgacagggtttcaccatgttggccaggctggtctcaatctcctaaccttgtgatccgcccacttcggcctcccaaagtga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659066 138 - 115148730 gtagatgggactacaggcatgcgccaccacacctggctaatttttcgtattttagtagtgacagggtttcaccatgttggccaggctggtcttgatctcctgacctcgtgatccacccacttcggcctcccaaagtga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84274130 138 + 92844088 gtagctgggactacaggcatgcgccaccacacccggctaatttttcatattttagtagtgacagggtttcaccatgttggccaggctggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87619140 138 - 96509753 gtagctgggactacaggcatgcgccaccacacccggctaatttttcatattttagtagtgacagggtttcaccatgttggccaggctggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7110977 138 - 13098629 gtagctgggactacaggcatgcgccaccacacccagctaatttttcatattttagtagtgacagggtttcaccatgttggccaggctggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4077758 138 - 4483953 gtagctgggactacaggcatgcgccaccacacccggctaatttttcatattttagtagtgacagggtttcaccatgttggccaggctggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24707805 138 + 33263144 gtagctgggactacaggcatgcgccaccacacccggctaatttttcatattttagtagggacagggtttcaccatgttggccaggctggtctcgatctcctgacctcgtgatccgcccacctcggcctctcaaagtgt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13981975 138 - 14338769 gtagctgggactacaggcatgcgccaccacacccggctaatttttcatattttagtagtgacagggtttcaccatgttggccaggctggtctcgagctcctgaccttgtgatccgcccacctcggcctcccaaagtgt i manLeu1.NW_012102031v1 C 0 C 0 e aotNan1.NW_018512383v1 33238 0 + 5963231 C e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720753 0 + 108171978 C e cebCap1.NW_016107750v1 1353182 31 - 1807191 I e saiBol1.JH378157 8870104 0 - 16357246 C e calJac3.chrUn_GL286373 1956825 0 - 2117846 C e colAng1.NW_012115588v1 924946 1064 + 1946073 I e panPan2.chr22 41140599 0 + 50109623 C e panTro5.chr22 28865992 0 + 37823149 C a score=79012.000000 s hg38.chr22_GL383582v2_alt 85788 22 + 162811 tgggattacaggtgtgagccac s gorGor5.CYUI01015375v1 3163021 22 + 4464012 tgggattacaggcgtgagccac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659204 22 - 115148730 tgggattgcaagcatgagctgc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84274268 22 + 92844088 tggcattacaggcgtgagccac i rheMac8.chr10 C 0 I 1 s macFas5.chr10 87619278 22 - 96509753 tggcattacaggcgtgagccac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7111115 22 - 13098629 tggcattacaggcgtgagccac i macNem1.NW_012012688v1 C 0 I 4 s cerAty1.NW_011999588v1 4077896 22 - 4483953 tggcattacaggcgtgagccac i cerAty1.NW_011999588v1 C 0 I 1 s chlSab2.chr19 24707943 22 + 33263144 tggcattacaggcgtgagccac i chlSab2.chr19 C 0 I 1 s manLeu1.NW_012102031v1 13982113 22 - 14338769 tggcattacaggcgtgagccac i manLeu1.NW_012102031v1 C 0 I 1 s cebCap1.NW_016107750v1 1353213 22 - 1807191 tgggattacagttgtgaaccac i cebCap1.NW_016107750v1 I 31 C 0 e aotNan1.NW_018512383v1 33238 0 + 5963231 C e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720753 0 + 108171978 C e saiBol1.JH378157 8870104 0 - 16357246 C e calJac3.chrUn_GL286373 1956825 0 - 2117846 C e colAng1.NW_012115588v1 924946 1064 + 1946073 I e panPan2.chr22 41140599 0 + 50109623 C e panTro5.chr22 28865992 0 + 37823149 C a score=476.000000 s hg38.chr22_GL383582v2_alt 85810 1 + 162811 c s gorGor5.CYUI01015375v1 3163043 1 + 4464012 c i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659226 1 - 115148730 c i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87619300 1 - 96509753 t i macFas5.chr10 C 0 C 0 s cebCap1.NW_016107750v1 1353235 1 - 1807191 c i cebCap1.NW_016107750v1 C 0 C 0 e aotNan1.NW_018512383v1 33238 0 + 5963231 C e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720753 0 + 108171978 C e saiBol1.JH378157 8870104 0 - 16357246 C e calJac3.chrUn_GL286373 1956825 0 - 2117846 C e colAng1.NW_012115588v1 924946 1064 + 1946073 I e manLeu1.NW_012102031v1 13982135 1 - 14338769 I e chlSab2.chr19 24707965 1 + 33263144 I e cerAty1.NW_011999588v1 4077918 1 - 4483953 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I e rheMac8.chr10 84274290 1 + 92844088 I e panPan2.chr22 41140599 0 + 50109623 C e panTro5.chr22 28865992 0 + 37823149 C a score=4180.000000 s hg38.chr22_GL383582v2_alt 85811 10 + 162811 gtgcctggcc s gorGor5.CYUI01015375v1 3163044 10 + 4464012 gtgcctggcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659227 10 - 115148730 gtgcctggtc i nomLeu3.chr7b C 0 C 0 s cebCap1.NW_016107750v1 1353236 10 - 1807191 atacctggTT i cebCap1.NW_016107750v1 C 0 C 0 e aotNan1.NW_018512383v1 33238 0 + 5963231 C e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e otoGar3.GL873526 36296118 110 - 42659167 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720753 0 + 108171978 C e saiBol1.JH378157 8870104 0 - 16357246 C e calJac3.chrUn_GL286373 1956825 0 - 2117846 C e colAng1.NW_012115588v1 924946 1064 + 1946073 I e manLeu1.NW_012102031v1 13982135 1 - 14338769 I e chlSab2.chr19 24707965 1 + 33263144 I e cerAty1.NW_011999588v1 4077918 1 - 4483953 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I e macFas5.chr10 87619301 0 - 96509753 C e rheMac8.chr10 84274290 1 + 92844088 I e panPan2.chr22 41140599 0 + 50109623 C e panTro5.chr22 28865992 0 + 37823149 C a score=600.000000 s hg38.chr22_GL383582v2_alt 85821 1 + 162811 C s gorGor5.CYUI01015375v1 3163054 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659237 1 - 115148730 C i nomLeu3.chr7b C 0 C 0 s otoGar3.GL873526 36296228 1 - 42659167 C i otoGar3.GL873526 I 110 C 0 e aotNan1.NW_018512383v1 33238 0 + 5963231 C e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720753 0 + 108171978 C e cebCap1.NW_016107750v1 1353246 0 - 1807191 C e saiBol1.JH378157 8870104 0 - 16357246 C e calJac3.chrUn_GL286373 1956825 0 - 2117846 C e colAng1.NW_012115588v1 924946 1064 + 1946073 I e manLeu1.NW_012102031v1 13982135 1 - 14338769 I e chlSab2.chr19 24707965 1 + 33263144 I e cerAty1.NW_011999588v1 4077918 1 - 4483953 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I e macFas5.chr10 87619301 0 - 96509753 C e rheMac8.chr10 84274290 1 + 92844088 I e panPan2.chr22 41140599 0 + 50109623 C e panTro5.chr22 28865992 0 + 37823149 C a score=7896.000000 s hg38.chr22_GL383582v2_alt 85822 3 + 162811 AAC s gorGor5.CYUI01015375v1 3163055 3 + 4464012 AAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659238 3 - 115148730 AAC i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1956825 3 - 2117846 AAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870104 3 - 16357246 AAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353246 3 - 1807191 AAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33238 3 + 5963231 AAC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36296229 3 - 42659167 AAC i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e canFam3.chr10 46092787 70 - 69331447 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720753 0 + 108171978 C e colAng1.NW_012115588v1 924946 1064 + 1946073 I e manLeu1.NW_012102031v1 13982135 1 - 14338769 I e chlSab2.chr19 24707965 1 + 33263144 I e cerAty1.NW_011999588v1 4077918 1 - 4483953 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I e macFas5.chr10 87619301 0 - 96509753 C e rheMac8.chr10 84274290 1 + 92844088 I e panPan2.chr22 41140599 0 + 50109623 C e panTro5.chr22 28865992 0 + 37823149 C a score=6876.000000 s hg38.chr22_GL383582v2_alt 85825 2 + 162811 TG s gorGor5.CYUI01015375v1 3163058 2 + 4464012 TG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659241 2 - 115148730 TG i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1956828 2 - 2117846 TG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870107 2 - 16357246 TG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353249 2 - 1807191 TG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33241 2 + 5963231 TG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36296232 2 - 42659167 TG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46092857 2 - 69331447 TG i canFam3.chr10 I 70 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e proCoq1.NW_012136747v1 5084194 240 - 6317780 I e micMur3.chr7 5720753 0 + 108171978 C e colAng1.NW_012115588v1 924946 1064 + 1946073 I e manLeu1.NW_012102031v1 13982135 1 - 14338769 I e chlSab2.chr19 24707965 1 + 33263144 I e cerAty1.NW_011999588v1 4077918 1 - 4483953 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I e macFas5.chr10 87619301 0 - 96509753 C e rheMac8.chr10 84274290 1 + 92844088 I e panPan2.chr22 41140599 0 + 50109623 C e panTro5.chr22 28865992 0 + 37823149 C a score=12307.000000 s hg38.chr22_GL383582v2_alt 85827 4 + 162811 GTTA s gorGor5.CYUI01015375v1 3163060 4 + 4464012 GTTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659243 4 - 115148730 GTTA i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1956830 4 - 2117846 GTTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870109 4 - 16357246 GTTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353251 4 - 1807191 GTTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33243 4 + 5963231 GTTA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5084434 4 - 6317780 GTTG i proCoq1.NW_012136747v1 I 240 C 0 s otoGar3.GL873526 36296234 4 - 42659167 GCTG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46092859 4 - 69331447 GCTG i canFam3.chr10 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e micMur3.chr7 5720753 0 + 108171978 C e colAng1.NW_012115588v1 924946 1064 + 1946073 I e manLeu1.NW_012102031v1 13982135 1 - 14338769 I e chlSab2.chr19 24707965 1 + 33263144 I e cerAty1.NW_011999588v1 4077918 1 - 4483953 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I e macFas5.chr10 87619301 0 - 96509753 C e rheMac8.chr10 84274290 1 + 92844088 I e panPan2.chr22 41140599 0 + 50109623 C e panTro5.chr22 28865992 0 + 37823149 C a score=27975.000000 s hg38.chr22_GL383582v2_alt 85831 13 + 162811 GCTCTTGAAAGAG s gorGor5.CYUI01015375v1 3163064 13 + 4464012 GCTCTTGAAAGAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659247 13 - 115148730 GCTCTTGAAAGAG i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1956834 9 - 2117846 GCTCTT----GAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870113 9 - 16357246 GCTCTT----GAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353255 9 - 1807191 GCTCTT----GAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33247 9 + 5963231 GCTCTT----GAG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5720753 13 + 108171978 GCTCTTAAGAATA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5084438 13 - 6317780 GCTCTTGAGAAAA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36296238 13 - 42659167 GATCTTGAGAAAA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46092863 13 - 69331447 GCTCTTgagagag i canFam3.chr10 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66095 8 + 1056298 I e colAng1.NW_012115588v1 924946 1064 + 1946073 I e manLeu1.NW_012102031v1 13982135 1 - 14338769 I e chlSab2.chr19 24707965 1 + 33263144 I e cerAty1.NW_011999588v1 4077918 1 - 4483953 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I e macFas5.chr10 87619301 0 - 96509753 C e rheMac8.chr10 84274290 1 + 92844088 I e panPan2.chr22 41140599 0 + 50109623 C e panTro5.chr22 28865992 0 + 37823149 C a score=589440.000000 s hg38.chr22_GL383582v2_alt 85844 148 + 162811 A-----------------------------AGGATTTAACA-GCTG--TACTACAGAATATGGCAGACCATGACCCAGGGTAAA---TTACACCTTAGAC---TCAACATGAAAACATTTGGAGGAAAAAAGAGAACAGAAGGGATGGACTAAAACCCAAACTCCCTGAACTGACATTTCAAGGCT s gorGor5.CYUI01015375v1 3163077 148 + 4464012 A-----------------------------AGGATTTAACA-GCTG--TACTACAGAATATGGCAGACCATGACCCAGGGTAAA---TTACACCTTAGAC---TCAACATGAAAACATTTGGAGGAAAAAAGAGAACAGAAGGGACGGACTAAAACCCAAACTCCCTGAACTGACATTTCAAGGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659260 148 - 115148730 A-----------------------------AGGATTTAACA-GCTG--TACTACAGAATATGGCAGACCATGACCCAGGGTAAA---TTACACCTCGGAC---TCAACATGAAAATATTTGGCGGAAAAAAGAGAATGGAAGGGATGGACTAAAACCCAAACTCCCTGAACTGACATTTCAAGGCT i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1956843 148 - 2117846 A-----------------------------AGGATTTAACT-GCTG--TACTACCGAATATGGCAGACCATGACCCAGGGTAAA---TTACAGCTTAAAC---TCAACATGAAAACATTTGGAGGAGAAAAGAGAATGAAGAGGACGGACTAAAACCCAAACTTCCGGCACTGATATTTCAAGGCT i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8870122 148 - 16357246 A-----------------------------AGAATTTAACT-GCTG--TACTATCGAATATGGCAGACTATGACCCAGGGTAAA---TTACTGCTTAGAC---TTAACATGAAAACATTTGGAGGAGAAAAGAGAATGAAGGGGATGGACTAAAACCCAAGCTTCCTGCACTGATATTTCAAGGCt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353264 148 - 1807191 A-----------------------------AGGATTTAACT-GCTG--TACTACCAAATATGGCAGACCATGACCCAGGGTAAA---TTACAACTTAGAC---TCAACATGAAAACATTTGGAGGAGAAAAGAGAATGAAGGGGACGGATTAAAACCCAAACTTCCTGCACGGATATTTCAAGGCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33256 148 + 5963231 A-----------------------------AGGATTTAACTGGCTG--TACTACAGAATATGGCAGACAATGACCCAGGGTAAA---TAACAGCTTAGAC---TCAACATGAAAACATTTGGAGGAGAAAAGAGAA-GAAGGCGACGGACTAAAACCCAAACTTCCTGCACTGATATTTCAAGGCT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5720766 148 + 108171978 A-----------------------------AGGATTTAACA-GTTG--TACTATAGAATATGCCAAACCATGACCCTGGGTAAA---TTACAGAATAGAC---TCAACATGGCAACATTTAGAGGAAGGAAGAGAGTAGATGGGACAGACTAAAACCCAAATTCTCTGAGCTGACATTTTAAGGCT i micMur3.chr7 C 0 I 3708 s proCoq1.NW_012136747v1 5084451 148 - 6317780 A-----------------------------AGGATTTAACA-GTTG--TACTATACAATATGCCAGATGAGGACCCTGGGTGAA---TTACAGATTAGAC---TCAACATGGCAACATTCAGAGGAAGGAAGAAAATGGAAGGGATAGACTAAAACCCAAATTCTCTGAACTGACATTTCAAGGCT i proCoq1.NW_012136747v1 C 0 I 105 s otoGar3.GL873526 36296251 145 - 42659167 A-----------------------------AGGATTTAACA-GTTG--TATTACAGAATATGCCAGACCACAACCCTGGGTGAA---TTACCACTTAGAC---TCAACATGGCAACATGTA---GAAGGAAGAGAATGGAAGGGACAGACTGAAACCCAAACTCCCTGAACTGGCACTTGGAAACT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46092876 171 - 69331447 agagagagagagggagagggagagagagagagGACTAAGAG-GCTG--TACTATCGAATATACCA------GACTCAGGGTGAA---TTACAGTTCAGAC---CCAACACAGAAACATGTAGGGAAAGAAAGAGAATGCAGGGGACAGACTAAAACCCAACCTCCCTGAACTGACATTTCAAGGCT i canFam3.chr10 C 0 I 102 s dasNov3.JH570235 66103 151 + 1056298 A-----------------------------AAGACTTAATA-CTTAATTACTACGGACTCCG-----CTGTGAGCCAGGGTGAAAGGCAGCAGCTTGGACAGACCAGCAGGGGAATATTCAGGGGAAGAAAGAAAACAGAGGGGACAAACTAAAATCCCAACTCCCTGAACAGACATCGGAAGGCT i dasNov3.JH570235 I 8 C 0 e mm10.chr15 82821761 2571 + 104043685 I e colAng1.NW_012115588v1 924946 1064 + 1946073 I e manLeu1.NW_012102031v1 13982135 1 - 14338769 I e chlSab2.chr19 24707965 1 + 33263144 I e cerAty1.NW_011999588v1 4077918 1 - 4483953 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I e macFas5.chr10 87619301 0 - 96509753 C e rheMac8.chr10 84274290 1 + 92844088 I e panPan2.chr22 41140599 0 + 50109623 C e panTro5.chr22 28865992 0 + 37823149 C a score=2664.000000 s hg38.chr22_GL383582v2_alt 85992 4 + 162811 ACTT s gorGor5.CYUI01015375v1 3163225 4 + 4464012 ACTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659408 4 - 115148730 ACtt i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1956992 4 - 2117846 tttt i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8870270 4 - 16357246 tttt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353412 4 - 1807191 ATAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33404 4 + 5963231 Attt i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 66254 4 + 1056298 CCCT i dasNov3.JH570235 C 0 I 45 e mm10.chr15 82821761 2571 + 104043685 I e canFam3.chr10 46093047 102 - 69331447 I e otoGar3.GL873526 36296396 0 - 42659167 C e proCoq1.NW_012136747v1 5084599 105 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e colAng1.NW_012115588v1 924946 1064 + 1946073 I e manLeu1.NW_012102031v1 13982135 1 - 14338769 I e chlSab2.chr19 24707965 1 + 33263144 I e cerAty1.NW_011999588v1 4077918 1 - 4483953 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I e macFas5.chr10 87619301 0 - 96509753 C e rheMac8.chr10 84274290 1 + 92844088 I e panPan2.chr22 41140599 0 + 50109623 C e panTro5.chr22 28865992 0 + 37823149 C a score=107219.000000 s hg38.chr22_GL383582v2_alt 85996 84 + 162811 CAttt---ttgttttgagatagggtctcactctgttgcccaggctggagtgcagtggcccaactgagggtcatgcagcccctcctgg s gorGor5.CYUI01015375v1 3163229 84 + 4464012 CAttt---ttgttttgagatagggtctcactctgttgcccaggctggagtgcagtggcccaactgaggctcatgcagcccctcctgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659412 84 - 115148730 tgttt---ttgttttgagataggatctcactctgttgcccaggctggagtgcagtggcccaactgaggctcatgtagcccctcctgg i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1956996 76 - 2117846 gtttttgttttttttgagacagggtctcactctgttgcccaggctggagtgcagtggct-----------catgcagcccctcctgg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870274 86 - 16357246 tttttttttttttttgagatggggtctcactctgtagcccaggctggagtgcagtggcc-aatcacagcgcatgcagcccctcctgg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353416 86 - 1807191 ATATATA-tttttttgagatggggtcttactctgttgcccaggctggagtgcagtggcccaatcacggctcatgcagcccctcctgg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33408 84 + 5963231 ttttt---tttttttgagacggggtctcactctgttgcccaggctggagtgcagtggcccaatcacagctcatgcagcccctcctgg i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36296396 7 - 42659167 --------------------------------------------------------------------------------CTCCTCG i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66258 45 + 1056298 I e canFam3.chr10 46093047 102 - 69331447 I e proCoq1.NW_012136747v1 5084599 105 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e colAng1.NW_012115588v1 924946 1064 + 1946073 I e manLeu1.NW_012102031v1 13982135 1 - 14338769 I e chlSab2.chr19 24707965 1 + 33263144 I e cerAty1.NW_011999588v1 4077918 1 - 4483953 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I e macFas5.chr10 87619301 0 - 96509753 C e rheMac8.chr10 84274290 1 + 92844088 I e panPan2.chr22 41140599 0 + 50109623 C e panTro5.chr22 28865992 0 + 37823149 C a score=40206.000000 s hg38.chr22_GL383582v2_alt 86080 24 + 162811 g---------tccttccatctcagcctccctgg s gorGor5.CYUI01015375v1 3163313 33 + 4464012 gctcaggtaatccttccatctcagcctccctgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659496 32 - 115148730 gctca-gtaatccttccatctcagcctccctgg i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1957072 32 - 2117846 gctcagatgatccttccatctcagcctcctgg- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870360 32 - 16357246 gctcagatgatccttccatctcggcctcctcg- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353502 32 - 1807191 gctcagatgatccttccatctcagcctcctgg- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33492 32 + 5963231 gctcaggtgatccttccatctcagcctcctgg- i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66258 45 + 1056298 I e canFam3.chr10 46093047 102 - 69331447 I e otoGar3.GL873526 36296403 0 - 42659167 C e proCoq1.NW_012136747v1 5084599 105 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e colAng1.NW_012115588v1 924946 1064 + 1946073 I e manLeu1.NW_012102031v1 13982135 1 - 14338769 I e chlSab2.chr19 24707965 1 + 33263144 I e cerAty1.NW_011999588v1 4077918 1 - 4483953 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I e macFas5.chr10 87619301 0 - 96509753 C e rheMac8.chr10 84274290 1 + 92844088 I e panPan2.chr22 41140599 0 + 50109623 C e panTro5.chr22 28865992 0 + 37823149 C a score=523577.000000 s hg38.chr22_GL383582v2_alt 86104 181 + 162811 gtagctgggactacagacaagggccaccacgcctggctaattttt-tgta-ttttttgtagagacagggtttcaccatgttggccaggctggtctcgaactcctgggctcaagcaatcctcccacctcagcctccgaaagtgctgggattacaggtgtgagccaccacacctggcACTCTGTT s panTro5.chr22 28865992 181 + 37823149 gtagctgggactacagacaagggccaccacgcctggctaattttt-tgta-ttttttgtagagacagggtttcgccatgttggccaggctggtctcgaactcctgggctcaagcaatcctcccacctcagcctccgaaagtgctgggattacaggtgtgagccaccacacctggcACTCTGTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140599 181 + 50109623 gtagctgggactacagacaagggccaccacgcctggctaattttt-tgta-ttttttgtagagacagggtttcgccatgttggccaggctggtctcgaactcctgggctcaagcaatcctcccacctcagcctccgaaagtgctgggattacaggtgtgagccaccacacctggcACTCTGTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3163346 181 + 4464012 gtagctgggactaccgacaagggccaccatgcctggctaattttt-tgta-ttttttgtagagatagggtttcaccatgttggccaggctggtctcgaactcctgggctcaagcaatcctcccacctcagcctccgaaagtgctgggattacaggtgtgagccaccacacctggcACTCTGTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659528 181 - 115148730 gtagctgggactacagacaagggccaccacccctggctaattttt-tgta-ttttttgtagagatggggtttcgccacattggccaggctggtcttgaactcctgggctcaagcaatcctcccacctcagcctccgaaagtgctaggattacaggtgtgagccaccacacctggcACTCTGTT i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1957104 181 - 2117846 gtagctgggggtacaggcaagagttaccatgcctggctaattttt-ttta-ttttttgtagagatagggttttgtcatgttggccaggctgctctcaaacctctgggctcaagcactcttcccatctcagcctccaaaaatgctgggactacaggtgtgagccactgcacctgacACTCTATT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870392 182 - 16357246 gtagctagggctacaggcaagagttaccatgcctggctaatttttattta-ttttttgtagagatggggttttgccatgttggccaggctgctctcaaacttctgggctcaagcactcttcccatctcagcttctcaaagtgctgagattacaggtgtgaaccactgcacctggcACTCTATT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353534 182 - 1807191 gtagctggggctacaggcaagagttaccatgcctggataattttttttta-ttttttgtagagatggggttttgccatgttggccaggctgctctcaaacttctgggctcaagtactcttcccatctcagcttctgaaagtgctgggattataggtgtgaaccactgcacctggcGCTCTATT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33524 183 + 5963231 gtagctggggctacaggcaagagttaccatgcctggctaatttttaaaaatttttttgtagagatggggttttgccatgttggccaggctgctctcgaacttctgggctcaagcactcttcccatctcagcctccaaaagtgctgggattacaggtgtgagccactgcacctggcACTCTATT i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66258 45 + 1056298 I e canFam3.chr10 46093047 102 - 69331447 I e otoGar3.GL873526 36296403 0 - 42659167 C e proCoq1.NW_012136747v1 5084599 105 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e colAng1.NW_012115588v1 924946 1064 + 1946073 I e manLeu1.NW_012102031v1 13982135 1 - 14338769 I e chlSab2.chr19 24707965 1 + 33263144 I e cerAty1.NW_011999588v1 4077918 1 - 4483953 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I e macFas5.chr10 87619301 0 - 96509753 C e rheMac8.chr10 84274290 1 + 92844088 I a score=194798.000000 s hg38.chr22_GL383582v2_alt 86285 58 + 162811 TCTGATTCCCTATCT-TTCCGTTGATCAAATAGTGCCTTGGCC-ATCAAGCTGCCTTTCA s panTro5.chr22 28866173 58 + 37823149 TCTGATTCCCTATCT-TTCCTTTGATCAAATAGTGCCTTGGCC-ATCAAGCTGCCTTTCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140780 58 + 50109623 TCTGATTCCCTATCT-TTCCTTTGATCAAATAGTGCCTTGGCC-ATCAAGCTGCCTTTCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3163527 58 + 4464012 TCTGATTCCCTATCT-TTCCTTTGATCAAATAGTGCCTTGGCC-ATCAAGCTGCCTTTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659709 58 - 115148730 TCTGATTCCCTATTT-TTCCTTTGATCAAATAGTGCCTTGGCC-ATCAAGCTGCCCTTCA i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1957285 57 - 2117846 TCTGATTTCCTATTT-TTCCTCTGATCAAACAGTGCCTTGG-C-ATCAAGCTGCCCTTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870574 57 - 16357246 TCTGATTTCCTATTT-TTCCTCTGATCAAATAGTGCCTTGG-C-ATCAAGCTGCCCTTCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353716 57 - 1807191 TCTGATTTCCTATTT-TTCCTCTGATCAAATAGTGCCTTGG-C-ATCAAGCTGCCCTTCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33707 57 + 5963231 TCTGATTTCCTATTT-TTCCTCTGATCAAACAGTGCCTTGG-C-ATCAAGCTGCCCTTCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36296403 60 - 42659167 TCTTATTCCCCGTTCATCCCTCTGGTCAAATAGTACGCTGGCCAACCAAGCTGCCCTCCC i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66258 45 + 1056298 I e canFam3.chr10 46093047 102 - 69331447 I e proCoq1.NW_012136747v1 5084599 105 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e colAng1.NW_012115588v1 924946 1064 + 1946073 I e manLeu1.NW_012102031v1 13982135 1 - 14338769 I e chlSab2.chr19 24707965 1 + 33263144 I e cerAty1.NW_011999588v1 4077918 1 - 4483953 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I e macFas5.chr10 87619301 0 - 96509753 C e rheMac8.chr10 84274290 1 + 92844088 I a score=10051.000000 s hg38.chr22_GL383582v2_alt 86343 3 + 162811 --GTC s panTro5.chr22 28866231 3 + 37823149 --GTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140838 3 + 50109623 --GTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3163585 3 + 4464012 --GTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659767 3 - 115148730 --GTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84274291 3 + 92844088 --gTC i rheMac8.chr10 I 1 C 0 s macFas5.chr10 87619301 3 - 96509753 --gTC i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4077919 3 - 4483953 --gTC i cerAty1.NW_011999588v1 I 1 C 0 s chlSab2.chr19 24707966 3 + 33263144 --gTC i chlSab2.chr19 I 1 C 0 s manLeu1.NW_012102031v1 13982136 3 - 14338769 --gTC i manLeu1.NW_012102031v1 I 1 C 0 s calJac3.chrUn_GL286373 1957342 3 - 2117846 --GTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870631 3 - 16357246 --GTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353773 3 - 1807191 --GTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33764 3 + 5963231 --GTG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36296463 3 - 42659167 GAG-- i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66258 45 + 1056298 I e canFam3.chr10 46093047 102 - 69331447 I e proCoq1.NW_012136747v1 5084599 105 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e colAng1.NW_012115588v1 924946 1064 + 1946073 I e macNem1.NW_012012688v1 7111137 4 - 13098629 I a score=121646.000000 s hg38.chr22_GL383582v2_alt 86346 15 + 162811 CACATGTACGTGTG--A s panTro5.chr22 28866234 15 + 37823149 CACATGTACGTGTG--A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140841 15 + 50109623 CACATGTACGTGTG--A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3163588 15 + 4464012 CACATGTACGTGTG--A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659770 15 - 115148730 CACATGTACGTGTG--A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84274294 15 + 92844088 CACATGTATATGTG--A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87619304 15 - 96509753 CACATGTATGTGTG--A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7111141 15 - 13098629 CACATGTATGTGTG--A i macNem1.NW_012012688v1 I 4 C 0 s cerAty1.NW_011999588v1 4077922 15 - 4483953 CACATGTATGTGTG--A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24707969 15 + 33263144 CACATGTATGTGTG--A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13982139 15 - 14338769 CACATGTATGTGTG--A i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1957345 15 - 2117846 CACATGTACGTGGG--A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870634 17 - 16357246 CACAGGTACGTGTGCAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353776 15 - 1807191 CACATGTATGTGTG--A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33767 17 + 5963231 CACATGTACTTGTGAAC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36296466 15 - 42659167 CATGCGTACGTGCA--C i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66258 45 + 1056298 I e canFam3.chr10 46093047 102 - 69331447 I e proCoq1.NW_012136747v1 5084599 105 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e colAng1.NW_012115588v1 924946 1064 + 1946073 I a score=-9815.000000 s hg38.chr22_GL383582v2_alt 86361 4 + 162811 --ATAC s panTro5.chr22 28866249 4 + 37823149 --ATAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140856 4 + 50109623 --ATAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3163603 4 + 4464012 --ATAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659785 4 - 115148730 --ATAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84274309 2 + 92844088 --AT-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87619319 2 - 96509753 --AT-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7111156 2 - 13098629 --AT-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4077937 2 - 4483953 --AT-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24707984 2 + 33263144 --AT-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13982154 2 - 14338769 --AT-- i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1957360 2 - 2117846 --AC-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870651 2 - 16357246 --AC-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353791 2 - 1807191 --AC-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33784 2 + 5963231 --AC-- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36296481 2 - 42659167 --AC-- i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 66303 4 + 1056298 ACAC-- i dasNov3.JH570235 I 45 C 0 e mm10.chr15 82821761 2571 + 104043685 I e canFam3.chr10 46093047 102 - 69331447 I e proCoq1.NW_012136747v1 5084599 105 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e colAng1.NW_012115588v1 924946 1064 + 1946073 I a score=287245.000000 s hg38.chr22_GL383582v2_alt 86365 23 + 162811 ACACACTTTTGTAATAGTCTAAC s panTro5.chr22 28866253 23 + 37823149 ACACACTTTTGTAATAATCTAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140860 23 + 50109623 ACACACTTTTGTAATAATCTAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3163607 23 + 4464012 ACACACTTTTGTAAGAATCTAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659789 23 - 115148730 ACACATTTTTATAAGACTCTAAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84274311 23 + 92844088 ACACACTTTTATAAGAATCTAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87619321 23 - 96509753 ACACACTTTTATAAGAATCTAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7111158 23 - 13098629 ACACACTTTTATAAGAATCTAAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4077939 23 - 4483953 ACACACTTTTATAAGAATCTAAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24707986 23 + 33263144 ACACACTTTTATAAGAATCTAAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13982156 23 - 14338769 ACACACTTTTATAAGAATCTAAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 926010 23 + 1946073 ACACACTTTTATAAGAATCTAAC i colAng1.NW_012115588v1 I 1064 C 0 s calJac3.chrUn_GL286373 1957362 23 - 2117846 ACACACTTTTATAAGAATCTAAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870653 23 - 16357246 ACACACTTTTATAAGAATCTAAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353793 23 - 1807191 ACACACACTTATAAGAATCTAAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33786 23 + 5963231 ACACACTTTTATATGAATCTAAC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36296483 23 - 42659167 ACACACTTTAATGAGAATCTAAC i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 66307 23 + 1056298 ACACACTTTTATAAGAACCTAAC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e canFam3.chr10 46093047 102 - 69331447 I e proCoq1.NW_012136747v1 5084599 105 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=1903203.000000 s hg38.chr22_GL383582v2_alt 86388 164 + 162811 TGGCATCAGCATTAT-CTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTTGGAGAGAA---AAGAGGGAAGGGGGAGGTAAGGGCAAG---AAGGA---TGTGAAAGGAATGGAGACATATGCTTAA-ACAAAAGTCA-GGA--GCTGCAAGCAACTGCTGCGC s panTro5.chr22 28866276 165 + 37823149 TGGCATCAGCGTTAT-CTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTTGGAGAGAA---aagagggaagggggaggtaagggcaaggagaagga---tgtgaaaggaatggaGACAT--GCTTAA-ACAAAAgtca-gga--gctgcaagcaactgctgcgc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41140883 165 + 50109623 TGGCATCAGCGTTAT-CTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCCTGGAGAGAA---aagagggaagggggaggtaagggcaaggagaagga---tgtgaaaggaatggaGACAT--GCTTAA-ACAAAAgtca-gga--gctgcaagcaactgctgcgc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3163630 165 + 4464012 TGGCATCAGCGTTAT-CTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTTGGAGAGAA---AAGagggaagggggaggtaagggcaaggagaaaga---tgtgaaaggaatggaGACAT--GCTTAA-ACAAAAGTCA-GGA--GCtacaagcaactgctgtgc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659812 165 - 115148730 TGGCATCAGCGTTAT-CTTCTCTACCTCTCTTGTTCTTTTTAACTGCTTCTCCTACAGAAGCTTGGAGAGAA---AAGagggaagggggaggtaagggcaaggagaagga---tgtgtaaggaatggaGACAT--GCTTAA-ACAAAAGTCA-GGA--GCTGCAAGCAACTGCTGCGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84274334 164 + 92844088 TGGCATCAGTGTTAT-CTTCTCTGCCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTT-GAGAGAA---AAGagggaaggaaaaggtaagggcaaggagatgga---tgtgaaaggaagggaGACAT--GCTTAA-ACAAAAGTCA-GGA--GCTGCaagtaattgctgcac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87619344 164 - 96509753 TGGCATCAGTGTTAT-CTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTT-GAGAGAA---AAGagggaaggaaaaggtaagggcaaggagatgga---tgtgaaaggaagggaGACAT--GCTTAA-ACAAAAGTCA-GGA--GCTGCAAGTAATTGCTGCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7111181 164 - 13098629 TGGCATCAGTGTTAT-CTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTT-GAGAGAA---AAGagggaaggaaaaggtaagggcaaggagatgga---tgtgaaaggaagggaGACAT--GCTTAA-ACAAAAgtca-gga--gctgcaagtaattgctgcac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4077962 165 - 4483953 TGGCATCAGTGTTAT-CTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTTGGAGAGAA---AAGagggaaggaaaaggtaagggcaaggagatgga---tgtgaaaggaagggaGACAT--GCTTAA-ACAAAAGTCA-GGA--GCTGCaagtaattgctgcgc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24708009 165 + 33263144 TGGCATCAGTGTTAT-CTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTTGGAGAGAA---AAGagggaaggaaaaggtaagggcaaggagaagga---tgtgaaaggaagggaGACAT--GCTTAA-ACAAAAGTCA-GGA--GCTGCAAGTAATTGCTGCGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13982179 165 - 14338769 TGGCATCAGTGTTAT-CTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTTGGAGAGAA---AAGagggaaggaaaaggtaagggcaaggagatgga---tgtgaaaggaagggaGACAT--GCTTAA-ACAAAAgtca-gga--gctgcaagtaattgctgcgc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 926033 165 + 1946073 TGGCATCAGCGTTAT-ATTCTCTACCTCTCTTGTTCTTTGCAACTGTTTCTCCTACAGAAGCTTGGAGAGAA---AAGagggaaggaaaaggtaagggcaaggagaagga---tgtgaaacgaagggaGACAT--GCTTAA-ACAAAAGTCA-GGA--GCTGCAAGTAACTGATGCGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1957385 163 - 2117846 TGGCAACAGCGTTGT-CCTCTATACCTCTCTTGTTCTTTTTAGCTGTTTCTCCTACAGAAGCTTGGAGAGAA---AAGAGGGAAGCAGGAGGTAAGGGCAAGGAGAAGGA---TGTG-GAGGAATGGAGACAT--GCTGAC-ACAAAAGTCA-GGA--GCTGC-AGCAACTGCTGTGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870676 161 - 16357246 TGGCAACAGCGTTCT-CCTCTATACCTCTCTTGTTCTTTTTAGCTGTTTCTCCTACAGAAGCTTGGAGAGAA---AAGAGGGAAGCGGGAAGTAAGGGCA---AGACGGA---TGTG-GAGGAATGGAGACAT--GCTGATAACAAAAGTCA-GGA--GCTGC-AGTAACTGCTGTGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353816 163 - 1807191 TGGCAATAGCGCTGT-CCTCTATACCTCTCTTGTTCTTTTTAGCTGTTTCTCCTACAGAGGCTTGGAGAGAA---AAGAGGGAAGTGGGAGGTAAGGGCAAGGAGAAGGA---TGTG-GAGGAATGGAGACAT--GCTGAC-ACAAAAGTCA-GGA--GCTGC-AGTAACTGCTGTGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33809 163 + 5963231 TGGCAACAGTGTTGT-CCTCTATACCTCTCTTGTTCTTTTTAGCTGTTTCTCCTACAGAAGCTTGGAGAGAC---AAGAGGGAAGTGGGAGGTAAGGGCAAAGAGAAGGA---TGTG-GAGGAATGGAGACAT--GCTGAC-ACAAAAGTCA-GGA--GCTGC-AGTAACTGCTGTGC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5084704 168 - 6317780 TGGCATGAGCATTAT-TCTCTGTACCTCTCTTGTTCTTTTTAGCTGTTCTTTCCATAGAAACTTggagagaaaagaagagggaagggggaaggaaaggcaaagagaaggc---ggggaaaggaatggGGTCAT--GCTTAT-GCAAAAGTCAGGGA--GCTGA-AGCAACTTCTGCAC i proCoq1.NW_012136747v1 I 105 C 0 s otoGar3.GL873526 36296506 154 - 42659167 ----TTTGGCATTAT-CCTCTGTACCCCTCTTATTCTTTTTAGCTACCCCTCCCACAGAAACCTGGAAAAAAAAGAAGAGGGAAGGGGGAAAGAAAGGCAAAGCAAAGCT---TGGGAGTGG----------T--GCATGA-GCACAAGCTGGGGA--GCTGA-AGCAACTGCTGCAT i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 66330 166 + 1056298 TGGTATAAACATTATCCTTCCTTACGTTCCTTGTTCTTTTTAGCTATTCCTCCTACAGAAACTTGGAGAGAA---AAGAAGAGGGAGAAGGGAAAAGGCAGCAAAGAGGACATTATGGAAGGACGAAAG---T--GCTTAA-G-AAAAgtca-ggggtgctgg-aaaagctcctgcat i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e canFam3.chr10 46093047 102 - 69331447 I e micMur3.chr7 5720914 3708 + 108171978 I a score=157436.000000 s hg38.chr22_GL383582v2_alt 86552 12 + 162811 TGGAA---GGAAGGG s panTro5.chr22 28866441 12 + 37823149 tggaa---ggaaggg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141048 12 + 50109623 tggaa---ggaaggg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3163795 12 + 4464012 tggaa---ggaaggg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659977 12 - 115148730 TGGAA---GGAAGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84274498 12 + 92844088 tggaa---ggaaggg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87619508 12 - 96509753 TGGAA---GGAAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7111345 12 - 13098629 tggaa---ggaaggg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4078127 12 - 4483953 tggaa---ggaaggg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24708174 12 + 33263144 TGGAA---GGAAGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13982344 12 - 14338769 tggaa---ggaaggg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 926198 12 + 1946073 TGGAA---GGAAGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1957548 12 - 2117846 TGGAA---GGGTGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870837 12 - 16357246 TTGAA---GGAAGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353979 12 - 1807191 TGGAA---GGAAGGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33972 12 + 5963231 TGGAA---GGAAGGA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5084872 12 - 6317780 TGGAA---GGAAGGG i proCoq1.NW_012136747v1 C 0 I 244 s otoGar3.GL873526 36296660 14 - 42659167 TGGAAGAGGGAAGG- i otoGar3.GL873526 C 0 I 1 s canFam3.chr10 46093149 11 - 69331447 GGGAA---GGAAGG- i canFam3.chr10 I 102 I 1 s dasNov3.JH570235 66496 10 + 1056298 gggaa---ggagg-- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e micMur3.chr7 5720914 3708 + 108171978 I a score=2765176.000000 s hg38.chr22_GL383582v2_alt 86564 269 + 162811 -GGGGGCAGGATGAATTCTGAGACCTGATCCAAGTCTGTT-GGCCCTGCTCTGTGTATGTTATGCCTC-AC-------GCCTG-TTCCCATCATGCAGTCAGCCACGCCCT-CTTCCCCTTCCCATCAAATTCAAATCAAACCC-CGCCTCCTATGGACAGCG-TGGCTGCCTCCGTGGACAGCCCTGCTTCTCTCCTGGG-------GAAGCACAGAGA-----GGGGGCATGCACATGACAAGCACCATGCTACTTGCTGC-------CTT------CTCTCACCACTTTT-----C-----CTCAAACGTGACCA s panTro5.chr22 28866453 268 + 37823149 -tggg-caggatgaattctgagacctgatccaagtctgTT-GGCCCTGCTCTATGTGTGTTATGCCTC-AT-------GCCTG-TTCCCATCATGCAGTCAGCCACGCCCT-CTTCCCCTTCCCATCAAATTCAAATCAAACCC-CGCCTCCTATGGACAGCG-TGGCTGCCTCCGTGGACAGCCCTGCTTCTCTCCTGGG-------GAAGCACAGAGA-----GGGGGCATGCACATGACAAGCACCATGCTACTTGCTGC-------CTT------CTCTCACCACTTTT-----C-----CTCAAACGTGACCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141060 268 + 50109623 -tggg-caggatgaattctgagacctgatccaagtctgTT-GGCCCTGCTCTATGTGTGTTATGCCTC-AT-------GCCTG-TTCCCATCATGCAGTCAGCCACGCCCT-CTTCCCCTTCCCATCAAATTCAAATCAAACCC-CGCCTCCTATGGACAGCG-TGGCTGCCTCCGTGGACAGCCCTGCTTCTCTCCTGGG-------GAAGCACAGAGA-----GGGGGCATGCACATGACAAGCACCATGCTACTTGCTGC-------CTT------CTCTCACCACTTTT-----C-----CTCAAACGTGACCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3163807 268 + 4464012 -tggg-caggatgaattctgagacctgatccaagtctgTT-GGCCCTGCTCTATGTGTGTTATGCCTC-AT-------GCCTG-TTCCCATCATGCAGTCAGCCACGCCCT-CTTCCCCTTCCCATCAAATTCAAATCAAACCC-CGCCTCCTATGGACAGCG-TGGCTGCCTCCATGGACAGCCCTGCTTCTCTCCTGGG-------GAAGCACAGAGA-----GGGGGCATGCACATGACAAGCACCATGCTACTTGCTGC-------CTT------CTCTCACCACTTTT-----C-----CTCAAACGTGACCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106659989 268 - 115148730 -TGGG-CAGGATGAATTCTGAGACCTGATCCAAGTCTGTT-GGCCTTGCTCTATGTGTGTTATGCCTC-AT-------GCCTG-TTCCCATCATGCAGTCAGCCACGCCCT-CTTCCCCTTCCCATCAAATTCAAATCAAACTT-CACCTCCTATGGACAGCG-TGGCTGCCTCCGTGGACGGCCTTGCTTCTCTCCTGGG-------GAAGCACAGAGA-----GGGGGCATGCACATGACAAGCACCATGCTACTTGCTGC-------CTT------CTCTCACCACTTTT-----C-----CTCAAACGTGACCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84274510 267 + 92844088 -tggg-caggatgaattctgagacctgatccaagtctgTT-GGCCCTGCTCTATGTGTGTTATGCCTC-AT-------GCCTG-TTCCCATTATGCAGTCAGCCATGCCCT-CTTCCCCTT-CCATCAAATTCAAATCAAACCC-CACCTCCTATGGACAGCG-TGGCTGCCTCCGTGGACAGCCCTGCTTCTCTCCTGGG-------GAAGCACAGAGA-----AGGGGTATGCAGATGACAAGCACCGTGCTACTTGCAGC-------CTT------CTCTCGTCACTTTT-----C-----CTCAAACGTGACCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87619520 267 - 96509753 -TGGG-CAGGATGAATTCTGAGACCTGATCCAAGTCTGTT-GGCCCTGCTCTATGTGTGTTATGCCTC-AT-------GCCTG-TTCCCATTATGCAGTCAGCCATGCCCT-CTTCCCCTT-CCATCAAATTCAAATCAAACCC-CACCTCCTATGGACAGCG-TGGCTGCCTCCGTGGACAGCCCTGCTTCTCTCCTGGG-------GAAGCACAGAGA-----AGGGGTATGCAGATGACAAGCACCGTGCTACTTGCAGC-------CTT------CTCTCGTCACTTTT-----C-----CTCAAACGTGACCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7111357 267 - 13098629 -tggg-caggatgaattctgagacctgatccaagtctgTT-GGCCCTGCTCTATGTGTGTTATGCCTC-AT-------GCCTG-TTCCCATTATGCAGTCAGCCATGCCCT-CTTCCCCTT-CCATCAAATTCAAATCAAACCC-CACCTCCTATGGACAGCG-TGGCTGCCTCCGTGGACAGCCCTGCTTCTCTCCTGGG-------GAAGCACAGAGA-----AGGGGTATGCAGATGACAAGCACCGTGCTACTTGCAGC-------CTT------CTCTCGTCACTTTT-----C-----CTCAAACGTGACCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4078139 268 - 4483953 -tggg-caggatgaattctgagacctgatccaagtctgTT-GGCCCTGCTCTATGTGTGTTATGCCTC-AT-------GCCTG-TTTCCATTATGCAGTCAGCCATGCCCTCCTTCCCCTT-CCATCAAATTCAAATCAAACCC-CACCTCCTATGGACAGCG-TGGCTGCCTCCGTGGAGAGCCCTGCTTCTCTCCTGGG-------GAAGCACAGAGA-----AGGGGTATGCAGATGACAAGCACCGTGCTACTTGCAGC-------CTT------CTCTCGTCACTTTT-----C-----CTCAAACGCGACCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24708186 267 + 33263144 -TGGG-CAGGATGAATTCTGAGACCTGATCCAAGTCTGTT-GGCCCTGCTCTATGTGTATTATGCCTC-AT-------GCCTG-TTCCCATTATGCAGTCAGCCATGCCCT-CTTCCCCGT-CCAACAAATTCACATCAAACCC-CACCTCCTGTGGACAGCG-TGGCTGCCTCCGTGGACAGCCCTGCTTCTCTCCTGGG-------GAAGCACAGAGA-----AGCGGCATGCAGATGACAAGCACCGTGCTACTTGCAGA-------CTT------CCCTCGCCACTTTT-----C-----CTCAAACGTGACCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13982356 268 - 14338769 -tggg-caggatgaattctgagacctgatccaagtctgTT-GGCCCTGCTCTATGTGTGTTATGCCTC-AT-------GCCTG-TTCCCATTATGCAGTCAGCCATGCCCTCCTTCCCCTT-CCATCAAATTCAAATCAAACCC-CACCTCCTATGGACAGCG-TGGCTGCCTCCGTGGACAGCCCTGCTTCTCTCCTGGG-------GAAGCACAGAGA-----AGGGGTATGCAGATGACAAGCACCGTGCTACTTGCAGC-------CTT------CTCTCGTCACTTTT-----C-----CTCAAACGCGACCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 926210 268 + 1946073 -TGGG-CAGGATGAATTCTGAGACCTGATCCAAGTCTGTT-GGCCCTGCTCTATGTGTGTTATGTCTC-AT-------GCCTG-TTCCTATTATGTAGTCAGCCACGCCCT-CTTCCCCTTCCCATCAAATTCAGATCAAACCC-CACCTCCTATGGACAGTG-TGGCTGCCTTCGTGGACAGCCCTGCTTCTCTCCTGGG-------GAAGCACAGAGA-----AGGGGCATGCAGATGACAAGCACCGTGCTACCTGCAGC-------TTT------CTCTCGCCACTTTT-----C-----CTCAAACGTGACCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1957560 271 - 2117846 -CGGG-CAGGATGAACTCTGAGACCTGGTCCAAGTCTGGTGGGCCCTGCTCTATGTGTGTTATGCCTC-TT-------GCCTG-TTCCCATCACGCAGTCAGCGATACCCT-CTTCCCCTTCCCATCATATTCAAATCAAACCC-CACCTCCTAGGGACAGTATTATCTGCCTCCATAGAAAACCCTGCTTCCCTCCTGGG-------GAAGCACAGAGA----AGAGGGCAAGCAGATGACAAGTACCATGCTACTTGCTGC-------CTT------CTCCCACCACTTTT-----C-----CTCAAACGTGACCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8870849 277 - 16357246 -TGGG-CAGGATGAGCTCTGAGACCTGATCCAAGTCTGGTGGGCCTTGCTCTATGTGCGTTATGCCTC-TT-------GCCTG-TTCCCATTATGCAGTCAGCCATACCCT-CTTCCCCTTACCACCATATTCAAATCAAACCC-CACCTCCTAGGGACAGTG-TAGCTGCCTCCATGGAAAGCCCTGCTTCCCTCCTGGG-------GAAGCACAGAGA---GGGGGGGCACGCAGATGACAAGTACCATGCTACTTGCTGC-------CTTCTCCCACTCCCACTACTTTT-----C-----CTCAAACGTGACCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1353991 268 - 1807191 -TGGG-CAGGATGAACTCTGAGACCTGATCCAAGTCTGGC-GGCCCTACTCCGTGTGCGTTATGCCTC-TT-------GCCTG-TTCCCATCGTGCAGTCAGCCATACCCT-CTTCCCCTTCCCATCATATTCAAATCAAACCC-CACCTCCTAGGGACAGCA-AAGCTGCCTCCATGGAAAGCCCTGCTTCCCTCCTGGG-------GAAGCACAGAGA-----GGGGGCACGCAGATGACAAGTACCATGCTACTTGCTGC-------CTT------CTCCCAGCACTTTT-----C-----CTCAAATGTGACCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 33984 252 + 5963231 -TAGG-CAGGATGAACTCTGAGACCTGATCCAAGTCTGGCGGGCCCTGCTCTATGTGCGTTATGCCTC-TT-------GCCTG-TTCCCATCATGCAGTCAGCCATACCCT-CTTCCCCTTCCCATCAGATTCAAATCAAACCC-CACCTCCTAGGGACAGTG-TAGCTG----------------------CCTCCTGGG-------GAAGCACGGGGCGGGGGGGTGGCACGCAGATGACAAGTACCATGCTACTTGCTGC-------CTT------CTCCCATCACTTTT-----C-----CTCAAACGTGACCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36296675 225 - 42659167 -TGGG-CAGGG-GAACTGTGAG----------AGCCTTCT-GGCCTGCCTTCCACAGTGCAGTGCTGT-GTGAGGAGCGCGGG-TCGCCTTCATCTGGTCAGCCACGCCTT-CCCCCCTTTCCCA-------------------------------GAGATGA-TGG----------AGACAGTTCTGTTTCCTTCCT-CA-------GAACCCCAGGAA-----------GCTCAGATAACAAGCACTGTGCTAGCTGCTGCTCTCTTGTTT------CTCTACCCCCTTTT----CC-----CTCCGGTGGCACTG i otoGar3.GL873526 I 1 C 0 s canFam3.chr10 46093161 246 - 69331447 -TGGT-CCAGATGCACTTGCACTCCC--CCCACGCCTGTCAGATTCCACTCCCTGTGCTTTGTGCCCCTGT-------ACCTGCTTCCCACCACCTGGTAAGCCACACCCT-CCCATCCTCCCTGCCAATTCCAAATCAAACCC-CACCTCCTAAGGAGAGTA-CAGCTGCCTCC----------------CTCTC-------------AAGCAGTTAGA----------------GATGATCAGCACCCTGCCACTTGATGCACCCTCGCTG------ATCTTCCCATTTTTGTCCCC-----CTCCATCTTTGA-- i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 66506 250 + 1056298 ttggg-caagatcaaccctgagattcttcccaagcctggg-GATCCTAGAC-ACGTGTTTTATGCCTCCAT-------ACCTG-CTTTCATTATCTGGTCAGCCATGCC------------------AAATCTAAACCAACCCCACATCTCC------------CGGCTGCCTCTGTGGGAAGCTATGTTTCCCTTCTCAGATCTCATGAAGCACTCAGA----------------GATAACAAGCATGATGCCATCTGTTGCATCTTCATTC------ATCTTTCTATTTTT-----CTCTTTCTCTAACCTGATGG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e proCoq1.NW_012136747v1 5084884 244 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=712755.000000 s hg38.chr22_GL383582v2_alt 86833 51 + 162811 CAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGATACATCTAATGCTC s panTro5.chr22 28866721 51 + 37823149 CAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGATATATCTAATGCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141328 51 + 50109623 CAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGATACATCTAATGCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164075 51 + 4464012 CAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGATACATCTAATGCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106660257 51 - 115148730 CAGGCATTATGAGGGCTGCCTGGGTG--ATGGTCTTAGATACATCTAATGCTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84274777 51 + 92844088 TAGGCACTATGGGGGCTGCCTGGGTG--ATGGTCTTAGACACATCTAATGCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87619787 51 - 96509753 TAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGACACATCTAATGCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7111624 51 - 13098629 TAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGACACATCTAATGCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4078407 51 - 4483953 TAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGACACATCTAATGCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24708453 51 + 33263144 TAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGACACATCTAATGCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13982624 51 - 14338769 TAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGACACATCTAATGCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 926478 51 + 1946073 CAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGACACATCTAATGCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1957831 53 - 2117846 CAGGCATTATGGGGGCTGCCTGGGTGTTATGGTCTTAGACACAGCTAATGCCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8871126 53 - 16357246 CAGGCATTATGGGGGCTGCCTGGGTGTGATGGTCTTAGACACATCTAATGCTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1354259 53 - 1807191 CAGGCATTATGGGGGCTGCTTGGGTGTGATGGTTTTAGACACATCTAGTGCTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 34236 53 + 5963231 CAGGCATTATGGGGGCTGCCTGGGTGTGATGGTCTTAGACACATCTAATGCTC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5085128 51 - 6317780 CAGGCATTATGAGGGCTGGCTGGGTG--AAGGTCTTAGACACATCTAATGCTC i proCoq1.NW_012136747v1 I 244 I 1 s otoGar3.GL873526 36296900 49 - 42659167 CAG--ATTTTGAGGGCTGGCTGGGTG--AAGATCTTAGATACACCTAATGCTT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46093407 46 - 69331447 TGAAAATACTTAGGGCCATTGAGGTG--AAGATCTTAGACACAC-----GCTC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 66756 51 + 1056298 TAAGTATTATGAGGGCAGGCTACAGG--AAGGTCTTAGACACATCTAATGCTT i dasNov3.JH570235 C 0 I 3 e mm10.chr15 82821761 2571 + 104043685 I e micMur3.chr7 5720914 3708 + 108171978 I a score=223765.000000 s hg38.chr22_GL383582v2_alt 86884 17 + 162811 AAG---Taacta--gaggacat s panTro5.chr22 28866772 20 + 37823149 AAGAAGTaacta--gaggacat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141379 20 + 50109623 AAGAAGTaacta--gaggacat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164126 20 + 4464012 AAGAAGTaacta--gaggatat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106660308 20 - 115148730 AAGAAGTaacta--gaggacat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84274828 20 + 92844088 AAGAAGTaacta--gaggacat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87619838 20 - 96509753 AAGAAGTaacta--gaggacat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7111675 20 - 13098629 AAGAAGTaacta--gaggacat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4078458 20 - 4483953 AAGAAGTaacta--gaggacat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24708504 20 + 33263144 AAGAAGTaacta--gaggacat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13982675 20 - 14338769 AAGAAGTaacta--gaggacat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 926529 20 + 1946073 AAGAAGTaacta--gaggacat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1957884 20 - 2117846 AGGAAATaacaa--gaagacat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8871179 20 - 16357246 AAGAAATaacaa--gaagacat i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1354312 20 - 1807191 AAGAAATaacaa--gaagacat i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 34289 20 + 5963231 AAGAAATAACAT--GAAGACAT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5085180 20 - 6317780 AAAAAGTCactg--ttggatat i proCoq1.NW_012136747v1 I 1 C 0 s otoGar3.GL873526 36296949 20 - 42659167 AAAAAGTaaatg--gaggacat i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 66810 19 + 1056298 ---AAGTAATTGCTGAAAACAT i dasNov3.JH570235 I 3 I 4247 e mm10.chr15 82821761 2571 + 104043685 I e canFam3.chr10 46093453 0 - 69331447 C e micMur3.chr7 5720914 3708 + 108171978 I a score=349423.000000 s hg38.chr22_GL383582v2_alt 86901 37 + 162811 tatgtcaagtgaaataagccaggcacggaaagttaaa s panTro5.chr22 28866792 37 + 37823149 tatgtcaagtgaaataagccaggcacagaaagttaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141399 37 + 50109623 tacgtcaagtgaaataagccaggcacagaaagttaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164146 37 + 4464012 tatgtcaagtgaaataagccaggcacagaaagttaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106660328 37 - 115148730 tatgtcaagtgaaataagctaggaacagaaagttaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84274848 37 + 92844088 tatgtcaactgaaataagccaggcacagaaagttaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87619858 37 - 96509753 tatgtcaactgaaataagccaggcacagaaagttaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7111695 37 - 13098629 tatgtcaactgaaataagccaggcacagaaagttaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4078478 37 - 4483953 tatgtcaactgaaataagccaggcacagaaagttaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24708524 37 + 33263144 tatgtcaactgaaataagccaggcacagaaagttaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13982695 37 - 14338769 tatgtcaactgaaataagccaggcacagaaagttaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 926549 37 + 1946073 tatgtcaagtgaaataagccaggcacagaaagttaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1957904 23 - 2117846 tatgtcaa--------------gcacagaaagttaaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8871199 23 - 16357246 tatgtcaa--------------gcacatcaagttaaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1354332 23 - 1807191 tatgtcaa--------------gcacagaaagttaaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 34309 23 + 5963231 TGTgtcaa--------------gcacagaaagttaaa i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5085200 37 - 6317780 tatgttaagtgaaataagccaggaaaggaaagttaaa i proCoq1.NW_012136747v1 C 0 I 784 s otoGar3.GL873526 36296969 37 - 42659167 tatgttaagtgagacgagccaggaactgaaagttaga i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66829 4247 + 1056298 I e canFam3.chr10 46093453 0 - 69331447 C e micMur3.chr7 5720914 3708 + 108171978 I a score=1424701.000000 s hg38.chr22_GL383582v2_alt 86938 140 + 162811 agctgcatgttctcgctcatgtggaaattt---aaaaagctgatcttacggaagtat---taaaaagtagaacagaggatactagaggccaggaagg-----ggaaaggaaaggaagagataa-gtagagatttgttaaagaatacaaaatt s panTro5.chr22 28866829 140 + 37823149 agctgcatgttctcgctcatgtggaaattt---aaaaagctgatcttacggaagtat---taaaaagtagaacagaggatactagaggccaggaagg-----ggaaaggaaaggaagagataa-gtagagatttgttaaagaatacaaaatt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141436 140 + 50109623 agctgcatgttctcgctcatgtggaaattt---aaaaagctgatcttacggaagtat---taaaaagtagaacagaggatactagaggccaggaagg-----ggaaaggaaaggaagagataa-gtagagatttgttaaagaatacaaaatt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164183 140 + 4464012 agctgcatgttctcgctcatgtggaaatta---aaaaagctgatcttacggaagtat---taaaaagtagaagagaggatactagaggccaggaagg-----ggaaaggaaaggaagagataa-gtagagatttgttaaagaatacaaaatt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106660365 140 - 115148730 agctgcatgttctcgctcatgtggaaattt---aaaaagctgatcttacggaagtat---taaaaagtagaatagagaatactagaggccaggaagg-----ggaaaggaaaggaagagataa-gtagagatttgttaaagaatacaaaatt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84274885 135 + 92844088 agctgcatgttcttgctcacgtggaaattt---aaaaagctgaccttatggaagtat---taaaaagtagaacagaggatactagaggctaggaaag-----ggaaaggaaggg-----ataa-gtagagatttgttaaagaatacaaaatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87619895 135 - 96509753 agctgcatgttcttgctcacgtggaaattt---aaaaagctgaccttatggaagtat---taaaaagtagaacagaggatactagaggctaggaaag-----ggaaaggaagag-----ataa-gtagagatttgttaaagaatacaaaatt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7111732 135 - 13098629 agctgcatgttcttgctcacatggaaattt---aaaaagctgaccttatggaagtat---taaaaagtagaacagaggatactagaggctaggaaag-----ggaatggaaggg-----ataa-gtagagatttgttaaagaatacaaaatt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4078515 135 - 4483953 agctgcatgttcttgctcacgtggaaattt---aaaaagctgaccttatggaagtat---taaaaagtagaacagaggatactagaggctaggaaag-----ggaaaggaaggg-----ataa-gtagagatttgttaaagaatacaaaatt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24708561 134 + 33263144 agctgtatgttcttgctcacgtggaaattt---aaaaagctgaccttacggaagtat---taaaaagtagaacagaggatactagaggctaggaaag-----ggaaaggaaggg------taa-gtagagatttgttaaagaatacaaaatt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13982732 135 - 14338769 agctgcatgttcttgctcacgtggaaattt---aaaaagctgaccttatggaagtat---taaaaagcagaacagaggatactagaggctaggaaag-----ggaaaggaaggg-----ataa-gtagagatttgttaaagaatacaaaatt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 926586 135 + 1946073 agctgcatgttcttgttcacgtggaaattt---aaaaagctgaccttacaaaagtat---taaaaagtagaacagaggatactagaggctaggaaag-----ggaaaggaaggg-----ataa-gtagagatttgttaaagaatacaaaatt i colAng1.NW_012115588v1 C 0 I 993 s calJac3.chrUn_GL286373 1957927 148 - 2117846 agctgcatgttctcattcatgtggaaacta---aaaaagctgatcttacagaagtattaataaaaagtagaacataggatactagaggctaggaaggggaaaggaaaggaaaggaaggggtaa-gcagagatttgttaaataatacaaaatt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8871222 143 - 16357246 agctgcatgttctcactcacatggaaacta---aaaaagccgatcttatagaagtattaataaaaagtagaacagaggatactagaggctaggaagg-----ggaaaggaaaggaaggggtaa-gtagagatttgttaaagaatacaaaatt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1354355 147 - 1807191 agctgcatgttctcactcacgtggaaacta---aaaaagctgat-ttatagaagtattaataaaaagtagaacagaggatactagaggctaggaaggggaaaggaaaggaaaggaaggggtaa-gtagagatttgttaaagaatacaaaatt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 34332 148 + 5963231 agctgcatgttctcactcacgtggaaacta---aaaaagctgatcttatagaagtattaataaaaagtagaacagaggatactagaggctaggaaggggaaaggaaaggaaaggaaagggtag-gtagagatttgttaaagaatataaaatt i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36297006 141 - 42659167 cactgcatgttcttactcatgtggaagcttaaaaaaaagctgatcttatagaagttc------aaagttaaacagaggatactagcagctgggaaag-----gtactggaaaaggaggactaagggagcggtttcttaaagaatacaaaatt i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66829 4247 + 1056298 I e canFam3.chr10 46093453 0 - 69331447 C e proCoq1.NW_012136747v1 5085237 784 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=976804.000000 s hg38.chr22_GL383582v2_alt 87078 119 + 162811 acatctagatgggagaaataagttctagtattctgtatcactgtaggataaccacagttaacaacattatattgtatagtttcaaatgactagaagatacca--aatgttcccaacacaga s panTro5.chr22 28866969 119 + 37823149 acatctagatgggagaaataagttctagtattctgtatcactgtaggataaccacagttaacaacattatattgtatagtttcaaatgactagaagatacca--aatgttcccaagacaga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141576 119 + 50109623 acatctagatgggagaaataagttctagtattctgtatcactgtaggataaccacagttaacaacattatattgtatagtttcaaatgactagaagatacca--aatgttcccaacacaga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164323 119 + 4464012 acatgtagatgggagaagtaagttctagtattctgtatcactgtaggataaccacagttaacaacattatatcgtatagtttcaaatgactagaagatacca--aatgttcccaacacaga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106660505 119 - 115148730 acatctagatgggagaaataagttctagtattctgtatcactgtaggataaccacagttaacaatattatattgtatagtttcaaatgattagaagatacca--aatgttcccaacacaga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84275020 119 + 92844088 acatctagatgagagaaataagttctagtattctgtatcactgtaggatgaccacagttaacaacaatatattgtatagttccaaatgaccagaagatacca--catgttcccaacacaga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620030 119 - 96509753 acgtctagatgagagaaataagttctagtattctgtatcactgtaggatgaccacagttaacaacaatatattgtatagttccaaatgaccagaagatacca--catgttcccaacacaga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7111867 119 - 13098629 acatctagatgagagaaataagttctagtattctgtatcactgtaggatgaccacagttaacaacaatatattgtatagttccaaatgaccagaagatacca--catgttcccaacacaga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4078650 119 - 4483953 acatctagatgagagaaataagttctagtattctgtatcactgtaggatgaccacagttaacaacaatatattgtatagttccaaatgaccagaagatacca--catgttcccaacacaga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24708695 119 + 33263144 acatctagatgagagaaataagttctagtattctgtatcactgtaggatgaccacagttaacaacaatatattgtatagttccaaatgaccagaagatacca--catgttcccaacacaga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13982867 119 - 14338769 ccatctagatgagagaaataagttctagtattctgtatcactgtaggatgaccacagttaacaacaatatattgtatagttccaaatgaccagaagatacca--catgttcccaacacaga i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1958075 103 - 2117846 acatctagatggg-aaaataagttctagtgt------tcactacagaatgacaacagtt---aacgatgtattgtatagtttcaaatgaccagaagataaca--aacgttccca------a i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8871365 106 - 16357246 acatctagatgggaaaaataagttctagtgt------tcactacaggatgacaacagttaacaacaatgtattgtatagtttcaaatgaccacaagatacca--aatgtt-cca------a i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1354502 107 - 1807191 acatctatatgggaaaaataagttctagcgt------tcactacaggatgacaacagttaacaacaatgtattgtatagtttcaaatgaccagaagatacca--aatgttccca------a i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 34480 107 + 5963231 acatctagatgagaaaaataagttctagtgt------tcactacaggatgacaacagttaacaacaatgtatcgtatagtttcaaatgaccagaagatacca--aatgttccca------a i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36297147 109 - 42659167 ccagttagacaggaggactaagttcaa--------taccactgcagga-gactacagttaacaa---tacattatatagtttccaatagctagaaggaagaaacaatgtttccaacacaga i otoGar3.GL873526 C 0 I 115 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66829 4247 + 1056298 I e canFam3.chr10 46093453 0 - 69331447 C e proCoq1.NW_012136747v1 5085237 784 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e colAng1.NW_012115588v1 926721 993 + 1946073 I a score=370758.000000 s hg38.chr22_GL383582v2_alt 87197 49 + 162811 catgttgtttgagacgatggatttgctaattacctaggtctgatcattt s panTro5.chr22 28867088 49 + 37823149 catgatgtttgagatgatggatttgctaattacctaggtctgatcattt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141695 49 + 50109623 catgatgtttgagatgatggatttgctaattacctaggtctgatcattt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164442 49 + 4464012 catgatgtttgagacgatggatttgctaattacctaggtctgatcattt i gorGor5.CYUI01015375v1 C 0 I 2 s nomLeu3.chr7b 106660624 47 - 115148730 tatgatgtttgagacgatgggtatgctaatcatctaggtctgatcat-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84275139 47 + 92844088 catgacatttgagatgatggatatgctaattacctaggtctgatcat-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620149 47 - 96509753 catgacatttgagatgatggatatgctaattacctaggtctgatcat-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7111986 47 - 13098629 catgatatttgagatgatggatatgctaattacctaggtctgatcat-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4078769 47 - 4483953 catgacatttgagatgatggatatgctaattacctaggtctgatcat-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24708814 47 + 33263144 catgacatttgagatgatagatatgctaattacctagttctgatcat-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13982986 47 - 14338769 catgacatttgagatgatggatatgctaattacctaggtctgatcat-- i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1958178 49 - 2117846 catgatgtttgagatgttagatatgctaattacccaggtctgatcattt i calJac3.chrUn_GL286373 C 0 I 15 s saiBol1.JH378157 8871471 49 - 16357246 catgatgtttgagatgttggatatgctaactacccaggtcggatcattt i saiBol1.JH378157 C 0 I 16 s cebCap1.NW_016107750v1 1354609 49 - 1807191 catgatgtttgagatgttggatatgctaattacccaggtcggatcattt i cebCap1.NW_016107750v1 C 0 I 53 s aotNan1.NW_018512383v1 34587 48 + 5963231 catgatg-ttgagatgttggatgtgctaattacccaggtctgatcattt i aotNan1.NW_018512383v1 C 0 I 2 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66829 4247 + 1056298 I e canFam3.chr10 46093453 0 - 69331447 C e otoGar3.GL873526 36297256 115 - 42659167 I e proCoq1.NW_012136747v1 5085237 784 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e colAng1.NW_012115588v1 926721 993 + 1946073 I a score=92515.000000 s hg38.chr22_GL383582v2_alt 87246 18 + 162811 tatatatata----ttgaaaca s panTro5.chr22 28867137 18 + 37823149 tatatatata----ttgaaaca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141744 18 + 50109623 tatatatata----ttgaaaca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164493 18 + 4464012 tatatatata----ttgaaaca i gorGor5.CYUI01015375v1 I 2 C 0 s nomLeu3.chr7b 106660671 18 - 115148730 tatatatata----tagaaacg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84275186 20 + 92844088 tatatatatata--ttgaaaca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620196 22 - 96509753 tatatatatatatgttgaaaca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112033 18 - 13098629 tatatatata----ttgaaaca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4078816 18 - 4483953 tatatatata----ttgaaaca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24708861 18 + 33263144 tatatatata----ttgaaaca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983033 18 - 14338769 tatatatata----ttgaaaca i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1958242 18 - 2117846 cacacacaca----cacacaca i calJac3.chrUn_GL286373 I 15 I 14 s saiBol1.JH378157 8871536 18 - 16357246 cacacacaca----cacacaca i saiBol1.JH378157 I 16 I 14 s aotNan1.NW_018512383v1 34637 18 + 5963231 tacacacata----cacacaca i aotNan1.NW_018512383v1 I 2 I 14 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66829 4247 + 1056298 I e canFam3.chr10 46093453 0 - 69331447 C e otoGar3.GL873526 36297256 115 - 42659167 I e proCoq1.NW_012136747v1 5085237 784 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e cebCap1.NW_016107750v1 1354658 53 - 1807191 I e colAng1.NW_012115588v1 926721 993 + 1946073 I a score=1320302.000000 s hg38.chr22_GL383582v2_alt 87264 153 + 162811 ttactgagcaccccatatctacaattactgtccattaaaaaaaGTAAAAAACgctgggcgcggtggctcacgtctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcgggag-tttgaaaccagcctggccaacatgg s panTro5.chr22 28867155 153 + 37823149 ttactgagcaccccatatctacaattactgtccattaaaaaaaGTAAAAAAggctgggcgcggtggctcacgtctgtaatccctgcactttgggaggctgaggtgggtggatcacctgaggtcagaag-tttgaaaccagcctggccaacatgg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141762 152 + 50109623 ttactgagcaccccatatctacaattactgtccatt-aaaaaaGTAAAAAAggctgggcgcggtggctcacgtctgtaatccctgcactttgggaggctgaggtgggtggatcacctgaggtcagaag-tttgaaaccagcctggccaacatgg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164511 152 + 4464012 ttactgagcaccccatatctacaattactgtccatt-aaaaaagtaaaaAAggctgggcgtggtggctcacgtctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggag-tttgaaaccagcttggccaacatgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106660689 153 - 115148730 ttactgagcaccccatatctacaattactgtccattaaaaaaaGTAAAAAAggctgggcacggtggctcacgtctgtaatcccagcactttggggggctgaggtgggtggatcacctgagatcaggag-tttgaaaccagcctggccaacatgg i nomLeu3.chr7b C 0 M 100 s rheMac8.chr10 84275206 152 + 92844088 ttactgagcaccccatatctacaattaatgtccatt-aaaaaagtaaaaAAggctgggcgcggtggctcacatctgtaatcccagcactttgggaggctgaggcaggtggatcatctgaggtcaggag-tttgaaaccagcctggccaacatgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620218 152 - 96509753 ttactgagcaccccatatctacaattaatgtccatt-aaaaaagtaaaaAAggctgggcgcggtggctcacatctgtaatcccagcactttgggaggctgaggcaggtggatcatctgaggtcaggag-tttgaaaccagcctggccaacatgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112051 152 - 13098629 ttactgagcaccccatatctacaattaatgtccatt-aaaaaaGTAAAAAAggctgggcgcggtggctcacatctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggag-tttgaaaccagcctggccaacatgg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4078834 152 - 4483953 ttactgagcaccccatatctacaattaatgtccatt-aaaaaaGTAAAAAAggctgggcgcggtggctcacgtctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggag-tttgaaaccagcctggccaacatgg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24708879 152 + 33263144 ttactgagcaccccatatctacaattaatgtccatt-aaaaaagtaaaaAAggctgggtgcggtggctcacgtctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggag-tttgaaaccagcctggccaacatgg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983051 152 - 14338769 ttactgagcaccccatatctacaattaatgtccatt-aaaaaaGTAAAAAAggctgggcgcggtggctcacgtctgtaatcccagcactttgggaggctaaggcaggtggatcatctgaggtcaggag-tttaaaaccagcctggccaacatgg i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1958274 153 - 2117846 cacacgagcaccccatgtctataattattgtccattaaaaaaaGTAAAAAAggctggtcacagtggctcacatctctaatcccagcactttgggagaccaaggcgggtggatcacctgaggccaggag-ttggaaatcagcctggtcaacatgg i calJac3.chrUn_GL286373 I 14 C 0 s saiBol1.JH378157 8871568 154 - 16357246 ctactgagtaccccatgtctacaattattgtccattaaaaaaaGTAAAAAAggctggtcacagtggctcacatctctaatcccagcactttcggagaccaaggcgggtggatcacctgaggccaggagtttggaaatcagccttgttaacatgg i saiBol1.JH378157 I 14 C 0 s cebCap1.NW_016107750v1 1354711 153 - 1807191 ttactgagcaccccatgtctacaattattgtccattaaaaaaaGTAAAAAGggctggtcacagtggctcacatctctaatcccagcatttcgggagaccaaggcgggtggatcacctgaggtcaggag-ttggaaatcagcctggtcaacatgg i cebCap1.NW_016107750v1 I 53 C 0 s aotNan1.NW_018512383v1 34669 153 + 5963231 ttactgagcaccccatgtctacaattattgtccattaaaaaaaGTAAAAAAggctggtcacagtggctcacatctctaatcccagcactttgggagacaaaggcgggtggatcacctgaggccaggag-ttggaaatcagcctggtcaacatgg i aotNan1.NW_018512383v1 I 14 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66829 4247 + 1056298 I e canFam3.chr10 46093453 0 - 69331447 C e otoGar3.GL873526 36297256 115 - 42659167 I e proCoq1.NW_012136747v1 5085237 784 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e colAng1.NW_012115588v1 926721 993 + 1946073 I a score=65254.000000 s hg38.chr22_GL383582v2_alt 87417 10 + 162811 caaaaccccg s panTro5.chr22 28867308 10 + 37823149 caaaaccccg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141914 10 + 50109623 caaaaccccg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164663 9 + 4464012 c-aaacccca i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84275358 10 + 92844088 caaaaccctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620370 10 - 96509753 caaaaccctg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112203 10 - 13098629 caaaaccctg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4078986 10 - 4483953 caaaaccctg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24709031 10 + 33263144 caaaaccctg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983203 10 - 14338769 caaaaccctg i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1958427 10 - 2117846 caaaatccca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8871722 10 - 16357246 caaaacccca i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1354864 10 - 1807191 caagacccca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 34822 10 + 5963231 caaaacccca i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66829 4247 + 1056298 I e canFam3.chr10 46093453 0 - 69331447 C e otoGar3.GL873526 36297256 115 - 42659167 I e proCoq1.NW_012136747v1 5085237 784 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e colAng1.NW_012115588v1 926721 993 + 1946073 I e nomLeu3.chr7b 106660842 100 - 115148730 M a score=106180.000000 s hg38.chr22_GL383582v2_alt 87427 16 + 162811 tctctactaa-aaatac s panTro5.chr22 28867318 16 + 37823149 tctctactaa-aaatac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141924 16 + 50109623 tctctactaa-aaatac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164672 16 + 4464012 tctctactaa-aaatac i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84275368 16 + 92844088 tctctactaa-aaatac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620380 16 - 96509753 tctctactaa-aaatac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112213 16 - 13098629 tctctactaa-aaatac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4078996 16 - 4483953 tctctactaa-aaatac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24709041 16 + 33263144 tctctactaa-aaatac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983213 12 - 14338769 tctctactaa-----ac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 927714 17 + 1946073 tctctactaaaaaatac i colAng1.NW_012115588v1 I 993 C 0 s calJac3.chrUn_GL286373 1958437 16 - 2117846 tctctagtaa-aaataa i calJac3.chrUn_GL286373 C 0 I 160 s saiBol1.JH378157 8871732 16 - 16357246 tctctagtaa-aaattt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1354874 16 - 1807191 tctctagtaa-aaatta i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 34832 15 + 5963231 actctagtaa-aaata- i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66829 4247 + 1056298 I e canFam3.chr10 46093453 0 - 69331447 C e otoGar3.GL873526 36297256 115 - 42659167 I e proCoq1.NW_012136747v1 5085237 784 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e nomLeu3.chr7b 106660842 100 - 115148730 M a score=9555.000000 s hg38.chr22_GL383582v2_alt 87443 1 + 162811 a s panTro5.chr22 28867334 1 + 37823149 a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141940 1 + 50109623 a i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164688 1 + 4464012 a i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84275384 1 + 92844088 a i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620396 1 - 96509753 a i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112229 1 - 13098629 a i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4079012 1 - 4483953 a i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24709057 1 + 33263144 a i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983225 1 - 14338769 a i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 927731 1 + 1946073 a i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1958613 1 - 2117846 a i calJac3.chrUn_GL286373 I 160 C 0 s saiBol1.JH378157 8871748 1 - 16357246 a i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1354890 1 - 1807191 a i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 34847 1 + 5963231 a i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66829 4247 + 1056298 I e canFam3.chr10 46093453 0 - 69331447 C e otoGar3.GL873526 36297256 115 - 42659167 I e proCoq1.NW_012136747v1 5085237 784 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e nomLeu3.chr7b 106660842 100 - 115148730 M a score=1330421.000000 s hg38.chr22_GL383582v2_alt 87444 158 + 162811 aaaa-ttagccgggcatggtggtgggcgcctgtagtcccagctactcgggaggctgtggcaggagaatcacttgaatctgggaggcagaggttgcagtgggctgagatcatgccattgtactttagcct-------------------------------------------------------------gggcgataagagcgaaacttcgtct--c-----------------aaaa s panTro5.chr22 28867335 158 + 37823149 aaaa-ttagccgggcatggtggtgggcgcctgtagtcccagctactcgggaggctgtggcaggagaatcacttgaatctgggaggcagaggttgcagtgggctgagatcatgccattgtactttagcct-------------------------------------------------------------gggcgataagagcgaaacttcgtct--c-----------------aaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41141941 158 + 50109623 aaaa-ttagccgggcatggtggtgggcgcctgtagtcccagctactcgggaggctgtggcaggagaatcacttgaatctgggaggcagaggttgcagtgggctgagatcatgccattgtactttagcct-------------------------------------------------------------gggcgataagagcgaaacttcgtct--c-----------------aaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164689 158 + 4464012 aaaa-ttagccgggcatggtgctgggcgcctgtagtcccagctactcaggaggctgtggcaggagaatcacttgaatctgggaggcagaggttgcagtgcgctgagatcatgccattgtactttagcct-------------------------------------------------------------gggtgacaagagtgaaacttcgtct--c-----------------aaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106660942 157 - 115148730 aaaa-tt-gccgggcatggtggtgggcgcctgtagtcccagctactcgggaggctgtggcaggagaatcacctgaatctgggaggcagaggttgcagtgggctgagatcatgccattgtactttagcct-------------------------------------------------------------gggtgacaagagcgaaacttcatct--c-----------------aaaa i nomLeu3.chr7b M 100 C 0 s rheMac8.chr10 84275385 158 + 92844088 aaaa-ttagccaggcatggtgacgcacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgcagtgggctgagatcatgccactgcactctagcct-------------------------------------------------------------gggcaacaagagcgaaacttcatct--a-----------------aaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620397 158 - 96509753 aaaa-ttagccaggcatggtgacgcacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgcagtgggctgagatcatgccactgcactctagcct-------------------------------------------------------------gggcaacaagagcgaaacttcatct--a-----------------aaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112230 160 - 13098629 aaaa-ttagccaggcatggtgacacacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgcagtgggctgagatcatgccactgcactctagcct-------------------------------------------------------------gggcaacaagagcgaaacttcatcttaa-----------------aaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4079013 158 - 4483953 aaaa-ttagccaggcatggtgacacacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgcagtgggctgagatcatgccactgcactctagcct-------------------------------------------------------------gggcaacaagagcgaaacttcatct--c-----------------aaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24709058 157 + 33263144 aaaa-ttagccaggcatggtgacgcacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgcagtgggctgagatcacgccactgcactctagcct-------------------------------------------------------------gggcaacaagagcgaaacttcatct--c------------------aaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983226 155 - 14338769 aaaa-ttagccaggcatggtgacgcacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaatctgggaggcagagatc---atgggctgagatcatgccactgcactctagcct-------------------------------------------------------------gggcaacaagagcgaaacttcatct--c-----------------aaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 927732 158 + 1946073 aaaagctagccgggcgaggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcataaacccgggaggcggagctggcaatgagctgagatctggccactgcactccagccc-------------------------------------------------------------gggcgat-agagtgagactccgtct--c-----------------aaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1958614 158 - 2117846 aaaa-gtagctgggtgtggtcgtgtgagcctgtaatcccagctactcaggaggctgaggcagaagaatggcttgaacccaggaggcggaggttgcagtgagctgagatcatgccattgtactctggtct-------------------------------------------------------------gggcaataagagcaaaactttgttt--c-----------------aaaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8871749 161 - 16357246 aaaa-tcagctgggtgtgatcatgtgaacctgtaatcccagctactcgggaggctgaggcaggagaatggtttgaacacaagaggtggaggttgcagtgagctgagatcatgccattgcactctagtct-------------------------------------------------------------gggcaataacagcaaaactttgttt--ccaa--------------aaaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1354891 210 - 1807191 aaaa-tcagccgggtgtggtcgtgtgagcctgtaatcccagctactcgggaggctgaggcaggagaatggcttgaacccgggaggcggaggttgcagtgagctgagatcatgccattgcactcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa----------------------------aaaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 34848 175 + 5963231 aaaa-ttagctgggtgtgatcatgtgagcctgtaatcccagctactcaggaggctgaggcaggagaatggcttgaacccaggaggcagaggttgcagtgagccgagatcatgccattgcactctagtct-------------------------------------------------------------gggcaataagagcaaaactttgtct--caaaaaaaataaataaataaaa i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66829 4247 + 1056298 I e canFam3.chr10 46093453 0 - 69331447 C e otoGar3.GL873526 36297256 115 - 42659167 I e proCoq1.NW_012136747v1 5085237 784 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=414252.000000 s hg38.chr22_GL383582v2_alt 87602 51 + 162811 ag------aaaa---------------gtaaaaaaCTTAATAAACTTGAAATTAACACCCACCTTGCCGCCA s panTro5.chr22 28867493 51 + 37823149 ag------aaaa---------------gtaaaaaaCTTAATAAACTTGAAATTAACACCCACCTTGCCACCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41142099 51 + 50109623 ag------aaaa---------------gtaaaaaaCTTAATAAACTTGAAATAAACACCCACCTTGACACCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164847 51 + 4464012 ag------aaaa---------------gtaaaaaaCTTAATAAACTTGAAATTAACACCCACCTTGCCACCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106661099 50 - 115148730 ag-------aaa---------------gtaaaaaaCTTAATAAACTTGAAATTAACACCCACCTTGCCGCTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84275543 50 + 92844088 aa-------aaa---------------gcaaaaaaCTTAATAAACTTGAAATTAACGCTCACCCTGCCACCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620555 50 - 96509753 aa-------aaa---------------gcaaaaaaCTTAATAAACTTGAAATTAACACTCACCCTGCCACCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112390 50 - 13098629 aa-------aaa---------------gcaaaaaaCTTAATAAACTTGAAATTAACACTCACCCTGCCACCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4079171 50 - 4483953 aa-------aaa---------------gcaaaaaaCTTAATAAACTTGAAATTAACACTCACCCTGCCACCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24709215 50 + 33263144 aa-------aaa---------------gcaaaaaaCTTAATAAACTTGAAATTAACACTCACCCTGCCACCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983381 50 - 14338769 aa-------aaa---------------gcaaaaaaCTTAATAAACTTGAAATTAACACTCACCCTGCCACCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 927890 65 + 1946073 aa-------aaaaaaaaaaaaaaaaaggcaaaaaACTTAATAAACTTGAAATTAACACTCACCCTGCCACCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1958772 52 - 2117846 aaaaaaaaaaaa---------------gtaaaaaTCCTAATAAACT-----TTAACACCCACCCCGCCGCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8871910 57 - 16357246 aaaaaaaaaaaa---------------gtaaaaaTCCTAATAAACTTAAAATTAACAACCACCCTGCCGCCG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1355101 51 - 1807191 aaaaaaaaaaaa---------------GTAAAAATCCTAATAAAA------TTAACACCCACCCTGCCGCCG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 35023 57 + 5963231 aataaataaAAA---------------GTAAAAACCCTAATAAACTTAAAATTAACACCCACCCTGCTGCCG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36297371 50 - 42659167 ------AAAAAA---------------AGAATAAGCCAAATAAACT-GAAATTAACATCCCTCCCACCAAAA i otoGar3.GL873526 I 115 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66829 4247 + 1056298 I e canFam3.chr10 46093453 0 - 69331447 C e proCoq1.NW_012136747v1 5085237 784 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=194988.000000 s hg38.chr22_GL383582v2_alt 87653 16 + 162811 AAAAAGTAACTGGGGA s panTro5.chr22 28867544 16 + 37823149 AAAAAGTAACTGGGGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41142150 16 + 50109623 AAAAAGTAACTGGGGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164898 16 + 4464012 AAAAAGTAAATGGGGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106661149 16 - 115148730 AAAAAGTAACTGGGGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84275593 16 + 92844088 AAAAAGTAACTGGGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620605 16 - 96509753 AAAAAGTAACTGGGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112440 16 - 13098629 AAAAAGTAACTGGGGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4079221 16 - 4483953 AAAAAGTAACTGGGGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24709265 16 + 33263144 AAAAAGTAACTGGGGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983431 16 - 14338769 AAAAAGTAACTGGGGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 927955 16 + 1946073 AAAAAGTAACTGGGGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1958824 16 - 2117846 AAAAAGTTAACTGGGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8871967 16 - 16357246 AAAAAGTAACTGGGGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1355152 16 - 1807191 AAAAAGTAACTAGGGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 35080 16 + 5963231 AAAAAGTAACTGGGGA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36297421 16 - 42659167 GAAAAAAGACTGGGAA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46093453 16 - 69331447 AAAAAGTAATTGGTGA i canFam3.chr10 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 66829 4247 + 1056298 I e proCoq1.NW_012136747v1 5085237 784 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=377681.000000 s hg38.chr22_GL383582v2_alt 87669 37 + 162811 AAACACCCACTGAAGGGACTAAAAGTCTAGAGTAAGA s panTro5.chr22 28867560 37 + 37823149 AAACACCCACTGAAGGGACTAAAAGTCTAGAGTAAGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41142166 37 + 50109623 AAACACCCACTGAAGGGACTAAAAGTCTAGAGTAAGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164914 37 + 4464012 AAACACCCACTGAAGGGACTAAAAGTCTAGAGTAAGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106661165 37 - 115148730 AAACACCCACTGAAGGGACTAAAAGTCTAGAGTAAGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84275609 37 + 92844088 AAACACCCACTAAAGGGACTAAAAGTCTAGGGTAAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620621 37 - 96509753 AAACACCCACTAAAGGGACTAAAAGTCTAGGGTAAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112456 37 - 13098629 AAACATCCACTAAAGGGACTAAAAGTCTAGGGTAAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4079237 37 - 4483953 AAACACCCACTAAAGGGACTGAAAGTCTAGAGTAAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24709281 37 + 33263144 AAACACCCACTAAAGGGACTAAAAGTCTAGAGTAAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983447 37 - 14338769 AAACACCCACTAAAGGGACTAAAAGTCTAGAGTAAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 927971 37 + 1946073 AAACACCCACTAAAGGGACTAAAAGTCTAGAGTAAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1958840 36 - 2117846 AAACACCCACTGAAGGGACT-AAAGTCTAGAAAAAGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8871983 36 - 16357246 AAACACCCACCAAAGGGACT-AAAGTCTAGAAAAAGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1355168 36 - 1807191 AAACTCCCACTGAAGGGACT-AAAGTCTAGAAAAAGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 35096 36 + 5963231 AAACACCCACTGAAGGGACT-AAAGTCTAGAAAAAGA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36297437 24 - 42659167 GAACACCAACTGGAGTGACTGCAA------------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46093469 35 - 69331447 GAATATCTATTGAAAGGACA-AGAATCTGGATGAAA- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 71076 36 + 1056298 aaataatctttaaaaaaaaAAAAAATTT-GAGGAAGA i dasNov3.JH570235 I 4247 C 0 e mm10.chr15 82821761 2571 + 104043685 I e proCoq1.NW_012136747v1 5085237 784 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=1029352.000000 s hg38.chr22_GL383582v2_alt 87706 77 + 162811 AAGGTGATTTTCCCAGGTTATCGAAGCTCTGAGTCA------------AAACTCAAGTCTTCTGCGTCACTCATTGGATGGCACTTCTT s panTro5.chr22 28867597 77 + 37823149 AAGGTGATTTTCCCAGGTTATCGAAGCTCTGAGTCA------------AAACTCAAGTCTTCTGCGTCACTCATTGGATGGCACTTCTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41142203 77 + 50109623 AAGGTGATTTTCCCAGGTTATCGAAGCTCTGAGTCA------------AAACTCAAGTCTTCTGCGTCACTCATTGGATGGCACTTCTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3164951 77 + 4464012 AAGGTGATTTTCCCAGGTTATCGAAGCTCTGAGTCA------------AAACTCAAGTCTTCTGCGTCACTCATTGGACGGCACTTCTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106661202 77 - 115148730 AAGGTGATTTTCCCAGGTTATCGAAGCTCTGAGTCA------------AAACTCAAGTCTTCTGCGTCACTCATTGGATGGCACTTCTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84275646 77 + 92844088 AAGGTGATTTTCCCAGGTTACTGAAGCTCTAAGTCA------------AAACTCAAGTCTTCTGCATCACTCACTGGATGGCACTTCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620658 77 - 96509753 AAGGTGATTTTCCCAGGTTACTGAAGCTCTAAGTCA------------AAACTCAAGTCTTCTGCATCACTCACTGGATGGCACTTCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112493 77 - 13098629 AAGGTGATTTTCCCAGGTTACTGAAGCTCTAAGTCA------------AAACTCAAGTCTTCTGCATCACTCACTGGATGGCACTTCTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4079274 77 - 4483953 AAGGTGATTTTCCCAGGTTATTGAAGCTCTAAGTCA------------AAACTCAAGTCTTCTGCATCACTCACTGGATGGCACTTCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24709318 77 + 33263144 AAGGTGATTTTCCCAGGTTACTGAAGCTCTAAGTCA------------AAACTCAAGTCTTCTGCATCACTCACTGGATGGCATTTCTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983484 77 - 14338769 AAGGTGATTTTCCCAGGTTATTGAAGCTCTAAGTCA------------AAACTCAAGTCTTCTGCATCACTCACTGGATGGCACTTTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 928008 77 + 1946073 AAGGTGATTTTCCCAGGTTATTGAAGCTCTAAGTCA------------AAACTCAAGTCTTCTGCATCACTCACTGGATGGCACTTCTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1958876 77 - 2117846 AAGGTGATTCTCCCAGGTTATCGAAGCTCGGAGTCA------------AAACTCTGGTCTTCTGCACCACTCACTGGACAGCACTTCTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8872019 89 - 16357246 AAGGCGATTCTCCCAGGTTATCGAAGCTCTGAGTCAGAAATGGTACAGAAACTGTGGTCTTCTGTACCATTCACTGGATGGCACTTCTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1355204 77 - 1807191 AAGGTGATTCTCCCAGGTTATCGAAGCTCTGAGTCA------------AAACTCTGGTCTTCTGTACCACTCACTGGACGGCACTTCTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 35132 77 + 5963231 AAGGTGATTCTCCCAGGTCATCGAAGCTCTGAGTCA------------AAACTCTGGTATTCTGCACCACTCACTGGATGACACTTCTT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5086021 77 - 6317780 AAGGTGATTTTCCCAAGCTGTTGAAGCTCTGAGTCA------------GAACTCAAGTCTCTTGAATCACTCACTGGATGGAACTTCTT i proCoq1.NW_012136747v1 I 784 I 3286 s otoGar3.GL873526 36297461 59 - 42659167 ---GTGATTT---------------GCCCTGAGTCA------------GAACTCATGTCTCCTTAATCACTAATTAGATGGAATGTCTT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46093504 69 - 69331447 AAGAGAACTTTCACAGGCTA---AAGCTTGGGGTCA------------AAATTTAATTC-----CACCACTCACTGGATGGAACTTCAT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 71112 77 + 1056298 AACCTGATTTTCCCAGGTTGTCAAAGTTCTGAATCA------------GAACCCAAGTCTTCTGCATCACTCTTTGGACAGCACCCCCT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e micMur3.chr7 5720914 3708 + 108171978 I a score=758591.000000 s hg38.chr22_GL383582v2_alt 87783 67 + 162811 TAACAAAATGTTTCCCTTCTTTCAACAGTTAACACACTGC-AAAACATCCCCC-T-ATCATCTCAGCAAA s panTro5.chr22 28867674 67 + 37823149 TCACAAAATGTTTCCCTTCTTTCAACAGTTAACACACTGC-AAAACATCCCCC-T-ATCATCTCAGCAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41142280 67 + 50109623 TCACAAAATGTTTCCCTTCTTTCAACAGTTAACACACTGC-AAAACATCCCCC-T-ATCATCTCAGCAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3165028 67 + 4464012 TAACAAAATGTTTCCCTTCTTTCAACAGTTAACACACTGC-AAAACATCCCCC-T-ATCATCTCAGCAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106661279 67 - 115148730 TAACAAAATGTTTCCCTTCTTTCAACAGTTAACACACTGC-AAAACATCCCCC-T-ATCATCTCAACAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84275723 67 + 92844088 TAACAAAATGTTTCCCTTCTTTCAACAGTTAACACATTGC-AAAACATCCCCC-T-ATCATCTCAACAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620735 67 - 96509753 TAACAAAATGTTTCCCTTCTTTCAACAGTTAACACATTGC-AAAACATCCCCC-T-ATCATCTCAACAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112570 67 - 13098629 TAACAAAATGTTTCCCTTCTTTCAACAGTTAACACATTGC-AAAACATCCCCC-T-ATCATCTCAACAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4079351 67 - 4483953 TAACAAAATGTTTCCCTTCTTTCAACAGTTAACACATTGC-AAAACATCCCCC-T-ATCATTTCAACAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24709395 67 + 33263144 TAACAAAATGTTTCCCTTCTTTCAACAGTTAACACATTGC-AAAACATCCCCC-T-ATCATCTCAACAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983561 67 - 14338769 TAACAAAATGTTTCCCTTCTTTCAACAGTTAACACATTGC-AAAACATCCCCC-T-ATCATCTCAACAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 928085 67 + 1946073 TAACAAAATGTTTCCCTTCTTTCAACAGTTAACACATTAC-AAAACATCCCCC-T-ATCATCTCAACAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1958953 52 - 2117846 TAACAGAATGTCTCCCTTCTTTCAACAGTTAACACA----------------C-T-ATCATCTCAACAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8872108 66 - 16357246 TAACAGAATGTTTCCCTTCTTTCAACCATTAACACA-TGC-AAAACACCACCC-T-ATCATCTCAACAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1355281 67 - 1807191 TAACAGAATGTTTCCCTTCTTTCAACAGTTAACACACTGC-AAAACACCACCG-T-ATCATCTCAACAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 35209 67 + 5963231 TAACAGAATGTTTCCCTTCTTTCAACAGTTAACACACTGC-AAAATGCCACCC-T-ACCATCTCAACAAA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36297520 64 - 42659167 --GGAAGAGGTTTCCCTTCTTTCAA--GTTATCACACAGC-AAAACACTGCCCAT-CACATCTCAACAGA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46093573 68 - 69331447 GGACAAAAGTTTTCCCTTCTTTCAACCGTTATGACACTGC-CAAATGCTATTC-tgatcatctcaacaga i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 71189 55 + 1056298 -GGTTAAGTAT------------AACAGTTGTTGTAATGCAAaaacacttcct-g-atcatctcaataga i dasNov3.JH570235 C 0 I 1502 e mm10.chr15 82821761 2571 + 104043685 I e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=86726.000000 s hg38.chr22_GL383582v2_alt 87850 9 + 162811 G----AAAATACA s panTro5.chr22 28867741 9 + 37823149 G----AAAATACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41142347 9 + 50109623 G----AAAATACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3165095 9 + 4464012 G----AAAATACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106661346 9 - 115148730 G----AAAATACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84275790 9 + 92844088 C----AAAATACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620802 9 - 96509753 C----AAAATACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112637 9 - 13098629 C----AAAATACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4079418 9 - 4483953 C----AAAATACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24709462 9 + 33263144 C----AAAATACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983628 9 - 14338769 C----AAAATGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 928152 9 + 1946073 C----AAAATACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1959005 9 - 2117846 C----AAAATGCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8872174 9 - 16357246 C----ACAATGCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1355348 9 - 1807191 C----AAAATGCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 35276 9 + 5963231 C----AAAATGCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36297584 9 - 42659167 A----AAAATGCA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46093641 13 - 69331447 catggaaaaaaca i canFam3.chr10 C 0 I 1645 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 71244 1502 + 1056298 I e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=379435.000000 s hg38.chr22_GL383582v2_alt 87859 52 + 162811 ACACTC--TATTGTATGTATACAACGtactgtgatttagagtaagaaatacata s panTro5.chr22 28867750 52 + 37823149 ACACTC--TATTGTATGTATACAACatactgtgatttagagtaagaaatacata i panTro5.chr22 C 0 C 0 s panPan2.chr22 41142356 52 + 50109623 ACACTC--TATTGTATGTATACAACatactgtgatttagagtaagaaatacata i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3165104 52 + 4464012 ACACTC--TATTGTATGTATACAACatactgtgatttagagtaagaaatacata i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106661355 54 - 115148730 ACACTCTGTATTGTATGTATACAACatactgtgatttagagtaagaaatacata i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84275799 41 + 92844088 ACACTC--T-Ttgta----------atactgtgatttagagtaagaaatacata i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620811 41 - 96509753 ACACTC--T-Ttgta----------atactgtgatttagagtaagaaatactta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112646 41 - 13098629 ACACTC--T-Ttgta----------atactgtgatttagagtaagaaatacata i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4079427 41 - 4483953 ACACTC--T-Ttgta----------atactgtgatttagagtaagaaatacata i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24709471 41 + 33263144 ACACTC--T-Ttgta----------atactgtgatttagagtaagaaatacata i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983637 41 - 14338769 ACACTC--T-Ttgta----------atactgtgatttagagtaagaaatacata i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 928161 41 + 1946073 ACACTC--T-Ttgta----------atactgtgattcagagtaagaaatacata i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1959014 41 - 2117846 ACACTC--C-Ttgta----------atactgtggtttagagtaagaaagacata i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8872183 41 - 16357246 ACACTC--C-TTGTA----------ATTCTGTGGTTTAGAGAaagaaagacata i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1355357 41 - 1807191 ACACTC--C-Ttgta----------atactgtggtttagagtaagacagacata i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 35285 41 + 5963231 ACACTC--C-Ttgta----------atactgtggtttagagtaagaaagacata i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36297593 35 - 42659167 GCACCA--C-TTGAA----------AGACTGTGATT------AAGAAATACcta i otoGar3.GL873526 C 0 I 2123 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 71244 1502 + 1056298 I e canFam3.chr10 46093654 1645 - 69331447 I e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=7461987.000000 s hg38.chr22_GL383582v2_alt 87911 769 + 162811 ttttagtcttcatccctgattcctggcacagacctcctaaaacccgtgtaaattcctgagcaattaggggtgctaggagcatcttttcttctaatatttggttt------ttgatcctggttcctgacatggagctcctaaacccttggaatttcctg---gataggagcactttttgttc---taaggctactcttggtggttcctggatgggggctgggcaccagagagacgaagctgtgattagcagcttggaactgttagctctacccaccccactccaggaaggacagagggggtgaagattgagttaataattgattatgcctacatgatgaagcctcc-aaaaaatccgtgaactactggattcagagggcttctggactgctgagtagatgaaggtgcctcaggggtggtgcccctggagagagcatggacgctccatgcccctgcccacacatctggcccta--tgtttctttcatgtggctgttcatctgcatcctttataatgggtaaacacaagtgaagtgtttccgtgaattctgtgagccatgttaaacattaatcaaacccaaggaagcggtcttgggaaccccagtttatagttgatcactcagaaaca-----caggtcataacacagggcttgag-attggtatatgaagtggggagcggtcttgtgggactgagccctt-aacctgtaggggctgcactaactctgcttagtatcagaaccaagctaaac----tataggacacccagttggtgtccaatggtgaattacctgtgt s panTro5.chr22 28867802 768 + 37823149 ttttagtcttcatccctgattcctggcacagacctcctaaaacccgtgtaaattcctgagcaat-aggggtgctaggagcatcttttcttctaatatttggttt------ttgatcctggttcctgacatggaggtcctaaacccttggagtttcctg---gataggagcactttttgttc---taaggctactcttggtggttcctggatgggggctgggcaccagagagactaagctgtgattagcagcttggaactgttagctctacccaccctactccaggaaggacagagggggtgaagattgagttaataattgattatgcctacatgatgaagcctcc-aaaaaatccgtgaactactggattcagagggcttctggactgctgagtagatgaaggtgcctcaggggtggtgcccctggagagagcatggatgctccatgcccctgcccacacatctggcccta--tgtttctttcatgtggctgttcatctgcatcctttataatgggtaaacacaagtgaagtgtttccgtgaattctgtgagccatgttaaacattaatcaaacccaaggaagcggtcttgggaaccccagtttatagttgatcattcagaaaca-----caggtcataacacagggcttgag-attggtatatgaagtggggagcggtcttgtgggactgagccctt-aacctgtaggggctgcactaactctgcttagtatcagaaccgagctaaac----tataggacacccagttggtgtccaatggtgaattacctgtgt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41142408 768 + 50109623 ttttagtcttcatccctgattcctggcacagacctcctaaaacccgtgtaaattcctgagcaat-aggggtgctaggagcatcttttcttctaatatttggttt------ttgatcctggttcctgacatggagctcctaaacccttggagtttcctg---gataggagcactttttgttc---taaggctactcttggtggttcctggatgggggctgggcaccagagagactaagctgtgattagcagcttggaactgttagctctacccaccccactccaggaaggacagagggggtgaagattgagttaataattgattatgcctacatgatgaagcctcc-aaaaaatccgtgaactactggattcagagggcttctggactgctgagtagatgaaggtgcctcaggggtggtgcccctggagagagcatggacgctccatgcccctgcccacacatctggcccta--tgtttctttcatgtggctgttcatctgcatcctttataatgggtaaacacaagtgaagtgtttccgtgaattctgtgagccatgttaaacattaatcaaacccaaggaagcggtcttgggaaccccagtttatagttgatcattcagaaaca-----caggtcataacacagggcttgag-attggtatatgaagtggggagcggtcttgtgggactgagccctt-aacctgtaggggctgcactaactctgcttagtatcagaaccgagctaaac----tataggacacccagttggtgtccaatggtgaattacctgtgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3165156 772 + 4464012 ttttagtcttcatccctgattcctggcacagacctcctaaaacccgtgtgaattcctgagcaattaggggtgctaggagcatcttttcttctaatatttggttt------ttgatcctggttcctgacatggagctcctaaacccttggaatttcctg---gataggagcactttttgttctaataaggcaactcttggtggttcctggatgggggctgggcaccagagagactaagctgtgattagcagcttggaactgttagctctacccaccccactccaggaaggacagagggggtgaagactgagttaataattgattatgcctacatgatgaagcctcc-aaaaaatccgtgaactactggattcagagggcttctggactgctgagtagatgaaggtgcctcgggggtggtgcccctggagagagcatggacgctccatgcccctgcccacacatctggcccta--tgtttctttcatgtggctgttcatctgcatcctttataatgggtaaacacaagtgaagtgtttccgtgaattctgtgagccacgttaaacattaatcaaacccaaggaagcggtcttgggaaccccagtttatagttgatcattcagaaaca-----caggtcataacacagggcttgag-attggtatatgaagtggggagtggtcttgtgggactgagccctt-aacctgtaggggctgcactaactctgcttagtatcagaaccgagctaaac----tgtaggacacccagttgatgtccaatggtgaattacctgtgt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106661409 775 - 115148730 ttttagtcttcatccctgattcctggcacagacctcctaaaacctgtgtaaattcctgagcaattaggggtgctaggagcatcttttcttctaatatttggttt------ttgatcctggttcctgacatggagctcctaaacccttggaatttcctg---gataggagcaccttttgttctaatgaggcaactcttggtggttcctggat-ggggctgggcactggagagactaagctgtgattagcagcttggaactgttagctctacccaccccactccaggaaggacagagggggtgaagactgagttaataattgattatgcctacatgatgaagcctcc-aaaaaatccgtgaactcctggattcagagggcttctggactgctgagtatatgaaggtgcctcaggggtggtgcccctggagagagcatggacgctccatgcccctgcccacacatctggcccta--tgtttctttcatctggctgttcatctgcatcctttataatgggtaaacacaagtgaagtgtttctgtgaattctgtgagccacgttaaacattaatcaaacccaaggaagcagtcttggaaaccccagtttatagttgatcattcagaaaca-----caggtcataacacagggcttgag-actggtatatgaagtggggagcggtcttgtgggactgagccctt-aacctgtaggggctgcactaactctgcttagtatcagagctgaactaaactgtatgtaggacactcagttgatgtccagtggtgaattacctgtgt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84275840 777 + 92844088 ttttagtcttcatccctgattcctggcacagacctcctaaaacccatgtaaattcctgagcaattaggggtgctaggagcatcttttcttctaatatttggttt------ttgatcctggttcctgacatggagctcctaaccccttggaatttcctg---gataggagcaccttttgttctaatgaggcaactcttggtggctcctggatgggggctgggcaccagagagactaagctgtgattagcagcttggaactttcagctctacccaccccactccaggaagcagagagggggtgaagactgagttaataattgattatgcctacatgatgaagcctcc-aaaaaatccatgaactactggattcagagagcttctggactgctgagtatatgaaggtacctcgggggtggtgcccctggagagagcatggacactccatgccccttcccacatatttggcccta--tgtttctttcatctgactgttcatctgcatcctttataatgagtaaacacaagtgaagtgtttctgttaattctgtaagccatgttaaacattaatcaaacccaatgaaggggtcttggaaaacctagtttaaagctgatcattcagaaacacaggtcaggtcataacatagggcttgag-gtcggcatttgaagtggggagcagtcttgtgggactgagccctt-aacctctatgggctgcactaactctgcttggtatcagaactgagctaaac----tgtaggacacccagttgatgttcaatggtgaattgcctATAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87620852 777 - 96509753 ttttagtcttcatccctgattcctggcacagacctcctaaaacccatgtaaattcctgagcaattaggggtgctaggagcatcttttcttctaatatttggttt------ttgatcctggttcctgacatggagctcctaaccccttggaatttcctg---gataggagcaccttttgttctaatgaggcaactcttggtggctcctggatgggggctgggcaccagagagactaagctgtgattagcagcttggaactttcagctctacccaccccactccaggaagcagagagggggtgaagactgagttaataattgattatgcctacatgatgaagcctcc-aaaaaatccatgaactactggattcagagagcttctggactgctgagtatatgaaggtacctcgggggtggtgcccctggagagagcatggacactccatgccgcttcccacatatttggcccta--tgtttctttcatctgactgttcatctgcatcctttataatgagtaaacacaagtgaagtgtttctgttaattctgtaagccatgttaaacattaatcaaacccaatgaaggggtcttggaaaacctagtttaaagctgatcattcagaaacacaggtcaggtcataacatagggcttgag-gtcggcatttgaagtggggagcagtcttgtgggactgagccctt-aacctctatgggctgcactaactctgcttggtatcagaactgagctaaac----tgtaggacacccagttgatgttcaatggtgaattgcctATAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7112687 777 - 13098629 ttttagtcttcatccctgattcctggcacagacctcctaaaacccatgtaaattcctgagcaattaggggtgctaggagcatcttttcttctaatatttggttt------ttgatcctggttcctgacatggagctcctaaccccttggaatttcctg---gataggagcaccttttgttctaatgaggcaactcttggtggctcctggatgggggctgggcaccagagagactaagctgtgattagcagcttggaactttcagctctacccaccccactccaggaagcagagagggggtgaagactgagttaataattgattatgcttacatgatgaagcctcc-aaaaaatccatgaactactggattcagagagcttctggattgctgagtatatgaaggtacctcgggggtggtgcccctggagagagcatggacactccatgccccttcccacatatttggcccta--tgtttctttcatctgactgttcatctgcatcctttataatgagtaaacacaagtgaagtgtttctgttaattctgtaagccatgttaaacattaatcaaacccaatgaaggggtcttggaaaacctagtttaaagctgatcattcagaaacacaggtcaggtcataacatagggcttgag-gtcggcatttgaagtggggagcagtcttgtgggactgagccctt-aacctctatgggctgcactaactctgcttggtatcagaactgagctaaac----tgtaggacacccagttgatgttcaatggtgaattgcctATAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4079468 777 - 4483953 ttttagccttcatccctgattcctggcacagacctcctaaaacccatgtaaattcctgagcaattaggggtgctaggagcatcttttcttctaatatttggttt------ttgatcctggttcctgacatggagctcctaaccccttggaatttcctg---gataggagcaccttttgttctaatgaggcaactcttggtggctcctggatgggggctgggcaccagagagactaagctgtgattagcagcttggaactttcagctctacccaccccactgcaggaagcagagagggggtgaagactgagttaataattgattatgcctacatgatgaagcctcc-aaaaaatccatgaactactggattcagagagcttctggactgctgagtatatgaaggtgcctcgggggtggtgcccctggagagagcatggacactccatgccccttcccacgtatttggcccta--tgtttctttcatctgactgttcatctgcatcctttataatgagtaaacacaagtgaagtgtttctgttaattctgtaagccatgttaaacattaatcaaacccaatggaggggtcttggaaaacctagtttaaagctgatcattcagaaacacaggtcaggtcataacataggccttgag-gtcggcatttgaagtggggagcagtcttgtgggactgagccctt-aacctctatgggctgcactaactctgcttggtatcagaactgagctgaac----tgtaggacatccagttgatgttcaatggtgaattgcctATAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24709512 773 + 33263144 ttttagtcttcatccctgattcctggcacagacctcctaaaacccatgtaaattcctgagcaattaggggtgctaggacca-----tcttctaatatttggttt------ttgatcctggttcctgacatggagctcctaaccccttggaatttcctg---gataggagcaccttttgttctaatgaggcaactcttggtggctcctgaatgggggctgggcaccagagagactaagctgtgattagcagcttggaacttttagctctacccaccccactccaggaagcagagagggggtgaagactgagttaataattgattatgcctacatgatgaagcctcc-aaaaaatccatgaactactggattcagagggcttctggactgctgagtatatgaaggtgcctcaggggtggtgcccctggagagagcatggacactccatgccccttcccacatatttggcccta--tatttctttcatctgactgttcatctgcatcctttataatgagtaaacacaagtgaagtgtttctgttaattctgtaagccatgttaaacattaatcaaacccaatgaaggggtcttggaaaacctagtttaaagctgatcattcagaaacacaggtcaggtcataacacagggcttgaaggtcggcatttgaagtggggagcagtcttgtgggactgagccctt-aacctctatgggctgcactaactctgcttggtatcagaactgagctaaac----tgtaggacacccagttgatgttcaatggtgaattgcctATAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13983678 777 - 14338769 ttttagtcttcatccctgattcctggcacagacctcctaaaacctatgtaaattcctgagcaattaggggtgctaggagcatcttttcttctaatatttggttt------ttgatcctggttcctgacatggagctcctaaccccttggaatttcctg---gataggagcaccttttgttctaatgaggcaactcctggtggctcctggatgggggctgggcaccagagagactaagctgtgattagcagcttggaactttcagctctacccaccccactccaggaagcagagagggggcgaagactgagttaataattgattatgcctacatgatgaagcctcc-aaaaaatccatgaactactgcattcagagagcttctggactgctgagtatatgaaggtgcctcgggggtggtgcccctggagagagcatggacactccatgccccttcccacatatttggcccta--tgtttctttcatctgactgttcatctgcatcctttataatgagtaaacacaagtgaagtgtttctgttaattctgtaagccatgttaaacattaatcaaacccaatggaggggtcttggaaaacctagtttaaagctgatcattcagaaacacaggtcaggtcataacatagggcttgac-gtcggcatttgaagtgggcagcagtcttgtgggactgagccctt-aacctctatgggctgcactaactctgcttggtatcagaactgagctgaac----tgtaggacacccagttgatgttcaatggtgaattgcctATAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 928202 784 + 1946073 ttttagtcttcatccctgattcctggcacagacctcctaaaacccatgtaaattcctgagcaattaggggtgctaggaggatcttttcttctaatatttggtttaactaggagctcctggttcctgacatggagctcctaaccccttggaatttcctg---gatacgagcacctttcattctaatgaggcaactcttggtggctcctggatgggggctgggcaccagagagactaagctgtgattagcatcttggaacttttagctctacccaccccactccaggaagcagagagggggtgaagactgagttaataattgattatgcctacatgatgaagcctccaaaaaaatccatgaactactggattcagagggtttctggactgctgagtatatgaaggtgccttgggggtggtgctcctggagagagcatggacgctccatgccccttcccacatatttggcccta--tgtttctttcatctggctgttcatctgcatccttcataatgagtaaacacaagtgaagtgtttctgtgaattctgtaagccacgttaaatattaatcaaacccagtgaaggggtcttggaaaacctagtttaaagctgatcattcagaaacacaggtcaggtcataacacagggcttgag-gttggcatttgaagtggggagcagtcttgtgggactgagccctt-aacctctatgggctgcactaactctgcttggtatcagaactgagctaaac----tgtaggacacccagttgatgtccaatagtgaactgcctATAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1959055 740 - 2117846 ttttagttttcatccctgattcctggcacagagctcctaaaacccatgtaaattcctgagcaattaggggttctaggagca-----tcttttaatatttggttt------ttgatcctggttcctgacatggagctcctaaccccttagaatttcctggatgataaaagca-------------tgaggcaactcttggtggctcctggatgggggataggcaccagagagactaagccatgattaaaagcttggaacttttagctctactcacccgactccaggaag--gagaggaggtgaagactgagttaataactgattatgcctacataatgaa--ctac--aaaaatccatgaactactggattcagagagcttctggactgctgagcatatgaaggtacctcaggggtggtgcccctggagaggg-----------catgccccttcccacatatctggccctatgtgtttctttcatctggctgttcatctgcattctttataatgtgtaaacacaagtgaagtgtttccctgagttccatgagccacgttaaac---aatcaaatccaaggaaggggtcttgggaaccccagtttatagctgatcattcggaaaca-----caggtcatatcacagggctcgag-actggcatctgaagtgggaagtggtcttgtgggaccgagccctt-aacctgcatgggctgtactaactctgcctagtatcggaactgaactgaac----tgtaggacacccagttgatgttcagtggagaactgcctgtgt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8872224 748 - 16357246 ttttagttttcatccctgattcctggcacagagctcctaaaacccatgtaaattcctgagcaatctggggtcctaggagaa-----tcttttaatatttggttt------ttgatcctggttcctgacatggagctcctaaccccttagaatttcctggatgataggagca-------------cgaggcaactcttggtggctcctggatgggggctaggcaccagagagactaggccatgattaaaagcttggaacttttagctctacccaccccactccaggaaggagagaggaggtgaagactgagttaataactgattatgcctacataattaagcctcc--aagaatccatgaactactggattcagagagcttctggactgctgagcacatgagggtacctcaggggtggtgccccaggagaggg-----------catgccccttcccacatatctggccctatgtgtctctttcatctggctgttcatctgtattctttataatgtgtaaacacaagtgaagtgtttccctgagttccgtgagccatgttaaacattaatcaaacccaaggaaggggtcttgggaaccccagtttatagctgatcattcagaaaca-----caggtcatatcacagggctcgag-actggcatctgaagtggggagtggtctagtgggactgagcccttaaacctgtatgggctgtactaactctgcctagtgtcggaactgaactaaac----tgcaggacacccagttgatgtccaatggagaactgcctgtgt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1355398 747 - 1807191 ttttagttttcatccctgattcctggcacagagatcctaaaacccgtgtaaattcctgagcaatctggggtcctaggagca-----tcttttaatatttggttt------ttgatcctggttcctgacatggagctcctaaccccttagaatttcctggatgataggagca-------------caaggcaactcttggtggctcctggatgggggctaggcaccagagagactaggccatgattaaaagcttagaacttttagctctatccaccccactccaggaaggagagaggaggtgaagactgagttaataactgattatgcctatacaatgaagcctcc--aaaaatccatgaactactggattcagagagcttctggactgctgagcacatgaaggtacctcgggggtggtgctcctggagaggg-----------catgccccttcccacatatctggtcctatgtgtttctttcatctggctgttcatctgtattctttataatgtataaacacaagtgaagtgtttccctgagttctgtgagccatgttaaacattaatcaaacccaaggaaggggtcttgggaaccccagtttatagctgatcattcagaaaca-----caggtcatgtcacagggctcgag-actggcatctgaagtggggagtggtcttgtgggactgagccctt-aacctgtatgggctgtactaactctgcctagtactggaactgaactaaac----tgtagggcacccagttgatgtccaatggagaactgcctgtgt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 35326 746 + 5963231 ttttagttttcatccctgattcctggcacagagctcctaaaacccgtgtaaattcctgagcaattaggggtcctaggagca-----tcttttaatatttggttt------ttgatcctggttcctgacatggagctcctaaccccttagaatttcctggatgatagcagca-------------cgaggcaactcttggtggctcctggatgggggctaggcaccagagagactaagccatgattaaaagcttggaacttttagctctacccaccccactccaggaaggagagaggaggtgaagactgagttaataactgattatgcctacataatgaagcctcc--aaaaatccatgaactactggattcaaagagcttctggactgctgagcacatgaaggtacctcaggggtggtgcccctggagagtg-----------catgtcccttcccacatatc-ggccctatgtgtttctttcatctggctgttcatctgcattctttataatgtgtaaacacaagtgaagtgtttccctgagttccgtgagccacgttaaacattaatcaaacccaaggaaggggttttgggaaccccagtttatagctgatcattcggaaaca-----caggtcatatcacagggctcgag-actggcatctgaagtggggagtggtctcatgggactgagccctt-aacctgtgtgggctgtactaactctgcctagtatcggaactgaactaaac----tgtaggacacccagttgatgtccaatagagaactgcctgtgt i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 71244 1502 + 1056298 I e canFam3.chr10 46093654 1645 - 69331447 I e otoGar3.GL873526 36297628 2123 - 42659167 I e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=2868092.000000 s hg38.chr22_GL383582v2_alt 88680 329 + 162811 gATGCTATCAAGAAaagaaagtaaaaagacaactc-agagaatggaagaaaacatttgcaaaccacatatccagaattacaaataattctttttttttttt-tttttttttt--------gagacagagtctcactctgttgcccaggctggagtgcagtggcgtgatctcg--------caacctctgcctcccgggttcaagtgattctcctgcctcagactcccgagtagctgggactataggtgcg---cgtcacatctggctaa-tttttgtagttttagtagagacggggtttcactattttagccaggctggtcttgaactcctgaccccatg--atccacctgcc--------------------------------------------- s panTro5.chr22 28868570 331 + 37823149 gATGCTATCAAGAAaagaaagtaaaaagacaactc-agagaatggaagaaaatatttgcaaaccacatatccagaattacaaataattctttttttttttt-tttttttttt------ttgagacagagtctcactctgttgcccaggctggagtgtagtggcgcgatctcg--------caacctctgcctcccgggttcaagtgattctcctgcctcagactcccgagtagctgggactataggtgcg---cgtcacatctggctaa-tttttgtagttttagtagagacggggtttcactattttagccaggctggtcttgaactcctgaccccatg--atccacccgcc--------------------------------------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41143176 327 + 50109623 gATGCTATCAAGAAaagaaagtaaaaagacaactc-agagaatggaagaaaatatttgcaaaccacatatccagaattacaaataattctttttttttttt-ttttttgt----------gagacagagtctcactctgttgcccaggctggagtgtagtggcgcgatctcg--------caacctctgcctcccgggttcaagtgattctcctgcctcagactcccgagtagctgggactataggtgcg---cgtcacatctggctaa-tttttgtagttttagtagagacggggtttcactattttagccaggctggtcttgaactcctgaccccatg--atccacccgcc--------------------------------------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3165928 320 + 4464012 gATGCTATCAAGAAaagaaagtaaaaagacaactc-agagaatggaagaaaatatttgcaaaccacatatccagaattacaaataattctttttttttttt-t-----------------gagacagagtctcactctgttgcccaggctggagtgcagtggcgcgatctcg--------caacctctgcctcccgggttcaagtgattctcctgcctcagactccccagtagctgggactataggtgcg---catcacacccggctaa-tttttgtagttttagtagagacggggtttcactattttagccaggctggtcttgaactcctgaccccatg--atccacccgcc--------------------------------------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106662184 330 - 115148730 gATGctatc-----aagaaagtaaaaagacaactcaagagaatggaagaaaatatttgcaaaccacatatccagaattacaaataattttttcttttcttt-tcttttctttttttttttgcgacagagtctcactctgttgcccaggctggagtgcagtggcgcgatctcg--------caacctctgcctcctgggttcaagcaattctcctgcctcggcctcccgagtagctgggactacaggtgcacaccaccacacctggctaa-tttttg------tagtagagacggggtttcactattttagccaggctggtctcgaactcctgaccccatg--atccacccgcc--------------------------------------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84276617 329 + 92844088 gatgctatcaagaaagaaaagtaaaaagacaactc-agagaatggaagaaaatatttgcaaaccacatatgcagaattacaaattcttttttttttttttt-ttttttt-----------gagacggagccttgctttgttgcccaggctggagtgcagtggtgcgatcccg--------caacctctgcctcctgggttcaagcaattttcctgcctcagcctcccgagtagctgggactacaggtgtacgccaccatacctggctaa-tttttgtatttttagtagagatggggtttcacaatgttgaccaggctggtcttgaactcctgacctcatg--atccacctgcc--------------------------------------------- i rheMac8.chr10 C 0 I 45 s macFas5.chr10 87621629 329 - 96509753 gatgctatcaagaaagaaaagtaaaaagacaactc-agagaatggaagaaaatatttgcaaaccacatatgcagaattacaaattcttttttttttttttt-ttttttt-----------gagacggagccttgctttgttgcccaggctggagtgcagtggtgcgatcccg--------caacctctgcctcctgggttcaagcgattttcctgcctcagcctcccgagtagctgggactacaggtgtacgccaccatacctggctaa-tttttgtatttttagtagagatggggtttcacaatgttgaccaggctggtcttgaactcctgacctcatg--atccacctgcc--------------------------------------------- i macFas5.chr10 C 0 I 45 s macNem1.NW_012012688v1 7113464 323 - 13098629 gatgctatcaagaaagaaaagtaaaaagacaactc-agagaatggaagaaaatatttgcaaaccacatatgcagaattacaaaatc------ttttttttt-ttttttt-----------gagacggagccttgctttgttgcccaggctggagtgcagtggtgcgattccg--------caacctctgcctcctgggttcaagcgattttcctgcctcagcctcccgagtagctgggactacaggtgtacaccaccatacctggctaa-tttttgtatttttagtagagatggggtttcacaatgttgaccaggctggtcttgaactcctgacctcatg--atccacctgcc--------------------------------------------- i macNem1.NW_012012688v1 C 0 I 45 s cerAty1.NW_011999588v1 4080245 326 - 4483953 gatgctatcaagaaagaaaagtaaaaagacaactc-agagaatggaagaaaatattcgcaaaccacatatgcagaattacaaattc---tttttttttttt-ttttttt-----------gagacggagtcttgctttgttgcccaggctggagtgcagtggtgcgatcccg--------caacctctgcctcctgggttcaagcgattttcctgcctcagcctcccgagtagctgggactataggtctacgccaccatacctggctaa-tttttgtatttttagtagagatggggtttcacaatgttgaccaggctggtcttgaactcctgacctcatg--atccacctgcc--------------------------------------------- i cerAty1.NW_011999588v1 C 0 I 45 s chlSab2.chr19 24710285 284 + 33263144 GATGCTA-----------------------------------------AAAATATTTGCAAACCACATATGCAGAATTACAAATAA-----ttcttttttt-ttttttt-----------gagacggagccttgctttgttgcccaggctggagtgcagtggtgcgatccca--------caacctctgcctcctgggttcaagcgattttcctgcctcagcctcccgagtagctgggactacaggtgtgtgccaccatacctggctaa-tttttgtatttttagtagagacggggtttcacaatgttgaccacgctggtcttgaactcctgacctcatg--atccgcccgcc--------------------------------------------- i chlSab2.chr19 C 0 I 258 s manLeu1.NW_012102031v1 13984455 328 - 14338769 gatgctatcaagaaagaaaaataaaaagacaactc-agagaatggaagaaaatattcgcaaaccacatatgcagaattacaaattc-tttttttttttttt-ttttttt-----------gagacggagccttgctttgttgcccaggctggagtgcagtagtgtgatcccg--------caacctctgcctcctgggttcaagcgattttcctgcctcagcctcccgagtagctgggactataggtctacgccaccatatctggctaa-tttttgtatttttagtagagatggggtttcacaatgttgaccaggctggtcttgaactcctgacctcatg--atccacctgcc--------------------------------------------- i manLeu1.NW_012102031v1 C 0 I 45 s colAng1.NW_012115588v1 928986 322 + 1946073 gatgctatcaagaaagaaaagtaaaaagacaactc-agagaatggaagaaaatatttgcaaaccacatatgcagaattacaaattt-------ttcttttt-ttttttt-----------gagacggagccttgctttgttgcccaggctggagtgcagtggcgcgatcccg--------taacctctgcctcctgggttcaagcgattttcctgcctcagcctcccgagtagctgggactacaggtgtgcaccaccatacctggctaa-tttttgtatttttagtagagatggggtttcacaatgttggccaggctggtcttgaactcctgacctcatg--atctgcccgcc--------------------------------------------- i colAng1.NW_012115588v1 C 0 I 46 s calJac3.chrUn_GL286373 1959795 320 - 2117846 gATGctatc--------aaagtaaaaagacaattc-agagaatagaagaaaatatttgcaaaccatatatccagaattacaaataacccc--tttttttgtgtttttgt-------------------gtctcactgtgttgctcaggctggagtgcagtggtgtgatctcggctcaccgcaacctccgcctcccgggttcaagtgattctcctgtctaagtctctcgagtagctgggactacaggcgtgtaccaccatgcccagctaa-tttttttatttttagtagaaatggggtttcactatgttggccaggctagtctcgaactcctgaccttatg--atctgcccacc--------------------------------------------- i calJac3.chrUn_GL286373 C 0 I 45 s saiBol1.JH378157 8872972 319 - 16357246 gATTctatc--------aaagtaaaaagacaattc-agagaatagaagaaaatatttgcaaaccagatatccagaattacaaataatccc---ttttttgt-tttttgt-------------------gtctcactctgttgcttaggctggagttcagtggtatgatctcggctcaccacaacctcggcctcctgggttcaagcgattctcctgcctcagactctcgagtagctgggactacaggagtgcaccatcatgcccagctaattttttttatttttagtagaaacggggtttcactatattggccaggctagtctcgaactcctgacctcatg--atctgcccacc--------------------------------------------- i saiBol1.JH378157 C 0 I 45 s cebCap1.NW_016107750v1 1356145 311 - 1807191 gATTctatc--------aaagtaaaaagacaattc-agagaatagaagaaaatatttgcaaaccatatatccagaattacaaataatccc----------t-tttttgt-------------------gtctcactctgttgctcaggctggaatgcagtggtgtgatctcggctcaacgcaacctccgccttccgggttcaagcgattctcctgcctcagtctctcgagtagctgggactacaggcgtgcaccaccatgcccagctaa-ttattttatttttagtagaaacgggatttcactatgttggccaggctagtctcaaactcctgacctcatg--atctgcccacc--------------------------------------------- i cebCap1.NW_016107750v1 C 0 I 45 s aotNan1.NW_018512383v1 36072 311 + 5963231 gATTctatc--------aaagtaaaaagacaattc-agagagtagaagaaaatatttgcaaaccatatatccagaaatacaaataattcc---ttttttgt-tttttgt-------------------gtctcattctgttgctcaggttggagtgcagtggtgcgatctcggttcaccgcaacctccgcctcccgggttcaagcgattctcctg----agtctcttgagtaactgggactacaggcgtgcaccaccatgcctggctaa----ttttatttttagtagaaacagggtttcactatgttggccaggctagtctcgaactcctgacctcatc--atctgcccacc--------------------------------------------- i aotNan1.NW_018512383v1 C 0 I 45 s otoGar3.GL873526 36299751 341 - 42659167 gatgctatc-----agaaaagt--aaagacaattc-ccagaatggaagaaaatatttgcaaaccatgtatccataattacaaagaattc----tttttctt-ttttttt-----------gaaacagagtccca---------------tagagtgccatagc---atcacagctcacagcaacctcaaattcctgggctcaagtgatcctcttgtctcagcctcctgagcagctgggattacaggcatctatcacaacacccagctat-ttt------------tagagatagggtctctc--tcttgctcaggctggtcttgaactcctgagcttaagcaatccacccatcttggcctcccagagtgctaggattacaggcatgagctactgttcc i otoGar3.GL873526 I 2123 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 71244 1502 + 1056298 I e canFam3.chr10 46093654 1645 - 69331447 I e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=47559.000000 s hg38.chr22_GL383582v2_alt 89009 5 + 162811 cggcc s panTro5.chr22 28868901 5 + 37823149 cggcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41143503 5 + 50109623 cggcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3166248 5 + 4464012 cggcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106662514 5 - 115148730 tggcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84276991 5 + 92844088 cggcc i rheMac8.chr10 I 45 C 0 s macFas5.chr10 87622003 5 - 96509753 cggcc i macFas5.chr10 I 45 C 0 s macNem1.NW_012012688v1 7113832 5 - 13098629 cggcc i macNem1.NW_012012688v1 I 45 C 0 s cerAty1.NW_011999588v1 4080616 5 - 4483953 cggcc i cerAty1.NW_011999588v1 I 45 C 0 s manLeu1.NW_012102031v1 13984828 5 - 14338769 cggcc i manLeu1.NW_012102031v1 I 45 C 0 s colAng1.NW_012115588v1 929354 5 + 1946073 tggcc i colAng1.NW_012115588v1 I 46 C 0 s calJac3.chrUn_GL286373 1960160 5 - 2117846 tggcc i calJac3.chrUn_GL286373 I 45 C 0 s saiBol1.JH378157 8873336 5 - 16357246 cagcc i saiBol1.JH378157 I 45 C 0 s cebCap1.NW_016107750v1 1356501 5 - 1807191 cggcc i cebCap1.NW_016107750v1 I 45 C 0 s aotNan1.NW_018512383v1 36428 5 + 5963231 cggcc i aotNan1.NW_018512383v1 I 45 C 0 s otoGar3.GL873526 36300092 5 - 42659167 cgcct i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e dasNov3.JH570235 71244 1502 + 1056298 I e canFam3.chr10 46093654 1645 - 69331447 I e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e chlSab2.chr19 24710569 258 + 33263144 I a score=144709.000000 s hg38.chr22_GL383582v2_alt 89014 14 + 162811 tacaaataattctt s panTro5.chr22 28868906 14 + 37823149 tacaaatagttctt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41143508 14 + 50109623 tacaaatagttctt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3166253 14 + 4464012 tacaagtaattctt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106662519 10 - 115148730 tacaaa----tctt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84276996 14 + 92844088 tacaaataattctt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87622008 14 - 96509753 tacaaataattctt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7113837 14 - 13098629 tacaaataattctt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4080621 14 - 4483953 tacaaataattctt i cerAty1.NW_011999588v1 C 0 C 0 s manLeu1.NW_012102031v1 13984833 14 - 14338769 tacaaataattctt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 929359 14 + 1946073 tacaaataattctt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1960165 14 - 2117846 tacaaataattctt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8873341 14 - 16357246 tacaaataattctt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1356506 14 - 1807191 tacaaataattctt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 36433 14 + 5963231 tacaaataattctt i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36300097 14 - 42659167 tataaagaattctt i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 72746 14 + 1056298 tataaagaactctt i dasNov3.JH570235 I 1502 C 0 e mm10.chr15 82821761 2571 + 104043685 I e canFam3.chr10 46093654 1645 - 69331447 I e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e chlSab2.chr19 24710569 258 + 33263144 I a score=153993.000000 s hg38.chr22_GL383582v2_alt 89028 13 + 162811 aaaacttgacatt s panTro5.chr22 28868920 13 + 37823149 aaaacttgacatt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41143522 13 + 50109623 aaaacttgacatt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3166267 13 + 4464012 aaaacttgacatt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106662529 13 - 115148730 aaaacttgacatt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84277010 13 + 92844088 aaaacttgacatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87622022 13 - 96509753 aaaacttgacatt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7113851 13 - 13098629 aaaacttgacatt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4080635 13 - 4483953 aaaacttgacatt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24710827 13 + 33263144 AAaacttgacatt i chlSab2.chr19 I 258 C 0 s manLeu1.NW_012102031v1 13984847 13 - 14338769 aaaacttgacatt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 929373 13 + 1946073 aaaacttgacatt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1960179 13 - 2117846 aaaacttgacgat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8873355 13 - 16357246 aaaacttgacaat i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1356520 13 - 1807191 aaaacttgacaat i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 36447 13 + 5963231 aaaacttgacaat i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36300111 13 - 42659167 aaaactcaacaat i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 72760 13 + 1056298 aaacctcaacaac i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82821761 2571 + 104043685 I e canFam3.chr10 46093654 1645 - 69331447 I e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=990716.000000 s hg38.chr22_GL383582v2_alt 89041 93 + 162811 aaaaaga-taaacaacccaattt-tacaatgggcaaaggatgtgaatagctatttctccaaagaagatgtacaaatggccaataggcacaagaaa- s panTro5.chr22 28868933 93 + 37823149 aaaaaga-taaataacccaattt-tacaatgggcaaaggatgtgaatagctatttctccaaagatgatgtacaaatggccaataggcacatgaaa- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41143535 93 + 50109623 aaaaaga-taaataacccaattt-tacaatgggcaaaggatgtgaatagctatttctccaaagaagatgtacaaatggccaataggcacatgaaa- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3166280 93 + 4464012 aaaaaga-taaataacccaattt-tacaatgggcaaaggatgtgaatagctatttctccaaagaagatgtacaaatggccaataggcacatgaaa- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106662542 93 - 115148730 aaaaaga-taaataacccaattt-tacaatgggcaaaggatgtgaatagctatttctccgtagaatatgtacaaatggccaataagcacatgaaa- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84277023 88 + 92844088 aaaaaaa-taa----tccaattt-tacaatgggcaaaggatgtgaatagctacttctccaaagatgatgcacaaatgaccaataagcacatg-aa- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87622035 87 - 96509753 aaaaaaa--aa----tccaattt-tacaatgggcaaaggatgtgaatagctacttctccaaagatgatgcacaaatgaccaataagcacatg-aa- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7113864 88 - 13098629 aaaaaaa-taa----tccaattt-tacaatgggcaaaggatgtgaatagctacttctccaaagatgatgcacaaatgaccaataagcacatg-aa- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4080648 88 - 4483953 aaaaaaa-taa----tccaattt-tacaatgggcaaaggatgtgaatagctacttctccaaagatgatacacaaatgaccaataagcacatg-aa- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24710840 87 + 33263144 aaaaaaa--aa----tccaattt-tacaacgggcaaaggatgtgaatagctacttctccaaagaagatgtacaaatgaccaataagcacatg-aa- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13984860 88 - 14338769 aaaaaaa-taa----tccaattt-tacaatgggcaaaggatgtgaatagctacttctccaaagatgatgcacaaatgaccaataagcacatg-aa- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 929386 92 + 1946073 aaaaaga-taaatactccaattt-tacaatgggcaaaggatgtgaatagctatttctccaaagaagatgtacaaatgaccaataagcacatg-aa- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1960192 92 - 2117846 aaaaaga-taaataacccaattt-aacaatgggcaaaggatgtgaatagctatttctccaaagaagatgtacaaatggccaataagcacata-aa- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8873368 93 - 16357246 aaaaagattaaataacccaattt-aacaatgggcaaaggatgtgaatatctatttctccaaagaagatgtacaaatggccaataagcacatt-aa- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1356533 91 - 1807191 aaaaaga-tacataacccaattt-aacaatgggcaaaggatgtgaatagcgatttctccaaagaagatgtacaaatggccaataagcacat--aa- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 36460 92 + 5963231 aaaaaga-taaataacccaattt-aacaatgggcaaaggatgtgaatagctatttctccaaagaagatgtacaaatggccgataagcacata-aa- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36300124 84 - 42659167 aaaaaat---------ccagctt-aaaaatgggcaaaggattttaataacaatttcttccaggaagatacacaaatgaccaataaatacatg-aa- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82824332 90 + 104043685 AATAAGT-Aaaacaa--caattt-aacagtgggcagagaactggaatgaacacttctccatagaagttgtacaaatgaccaataagcacata-ga- i mm10.chr15 I 2571 C 0 s dasNov3.JH570235 72773 77 + 1056298 aaaaaaa-tgaagaacccaatttaaaaaatgagcaaagggcttggat----acttctc-------------caaatgaccaaaaaacatgtg-aaa i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46093654 1645 - 69331447 I e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=1088707.000000 s hg38.chr22_GL383582v2_alt 89134 100 + 162811 aaaatgctcgac-----attagccatcagggaaata--caaataaaaaccacaatgaaataacatttcatacccactgggctggctacaat-----------t---aaaaaaa----aaaaaaaa s panTro5.chr22 28869026 99 + 37823149 aaaatgctcgac-----attagccatcagggaaata--caaataaaaaccacaatgaaataacatttcatacccactgggctggctacaat-----------t---aaaaaaa----aaaaaaa- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41143628 98 + 50109623 aaaatgctcgac-----attagccatcagggaaata--caaataaaaaccacaatgaaataacatttcatacccactgggctggctacaat-----------t---aaaaaaa----aaaaaa-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3166373 103 + 4464012 aaaatgctcaacat--tattagccatcagggaaaca--caaataaaaaccacaatgaaataacatttcatacccactgggctggctacaat-----------t---aaaaaaa----aaaaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106662635 99 - 115148730 aaaatgctcaacat--cattagccatcagggaaata--caaataaaaaccacaatgaaataacattgcatatccactgggctggctacaat-----------t---aaaaaaa----aaca---- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84277111 106 + 92844088 aaaatgctcaacat--cattagccatcaaggaaata--caaataaaaaccacaatcaaataacatttcatacccactgggctggctacaat-----------taaaaaaaaaa----aaaaaaac i rheMac8.chr10 C 0 I 9 s macFas5.chr10 87622122 103 - 96509753 aaaatgctcaacat--cattagccatcaaggaaata--caaataaaaaccacaatcaaataacatttcatacccactgggctggctacaat-----------t---aaaaaaa----aaaaaaac i macFas5.chr10 C 0 I 9 s macNem1.NW_012012688v1 7113952 104 - 13098629 aaaatgctcaacat--cattagccatcaaggaaata--caaataaaaaccacaatcaaataacatttcatacccactgggctggctacaat-----------t--aaaaaaaa----aaaaaaac i macNem1.NW_012012688v1 C 0 I 9 s cerAty1.NW_011999588v1 4080736 103 - 4483953 aaaatgctcaacat--cattagccatcaaggaaata--caaataaaaaccacaatcaaataacatttcatacccactgggctggctacaat-----------t---aaaaaaa----aaaaaaaa i cerAty1.NW_011999588v1 C 0 I 9 s chlSab2.chr19 24710927 103 + 33263144 aaaatgctcaacat--cattagccatcaaggaaata--caaataaaaaccacaatctaataacatttcatacccactgggctggctacaat-----------t---aaaaaaa----acaaaaac i chlSab2.chr19 C 0 I 7 s manLeu1.NW_012102031v1 13984948 103 - 14338769 aaaatgctcaacat--cattagccatcaaggaaata--caaataaaaaccacactcaaataacatttcatacccactgggctggctacaat-----------t---aaaaaaa----aaaaaaaA i manLeu1.NW_012102031v1 C 0 I 7313 s colAng1.NW_012115588v1 929478 103 + 1946073 aaaatgctcaacat--cattagccatcaaggaaata--caaataaaaaccacaatgaaataacatttcatacccactgggctggctacaat-----------t---aaaaaaa----aaaaacaa i colAng1.NW_012115588v1 C 0 I 8 s calJac3.chrUn_GL286373 1960284 95 - 2117846 aaaatgctcaacat--tattagccatcagggaaata--caaataaaaacaacaatgaaataccatttctaacccactgggttggctacatc--------------------aa----aaaaac-- i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8873461 112 - 16357246 aaaatgctcaacat--tattagccatcagggaaata--caaataaaaatcacaatgaactaccatttcttacccactgggttggctacatttaaaaaaacacc---aaaaaaa----aaaaaa-- i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1356624 108 - 1807191 aaaatgctcaacat--tattagccgtcagagaagta--caaataaaaaccacaatgaaataccacttcttacccactgggttggctacatt----aaaacaaa---caaacaa----acaaac-- i cebCap1.NW_016107750v1 C 0 I 1 s aotNan1.NW_018512383v1 36552 105 + 5963231 aaaatgctcaacat--tattagccattagggaaata--caaataaaaaccacaatgaaataccatttcttacccactgggttggctacatt-------gaagg---aaaaaaa----aaaaaa-- i aotNan1.NW_018512383v1 C 0 I 1 s otoGar3.GL873526 36300208 103 - 42659167 aagatcttcaacat--cattagccatcaggaaaataacaaaatcaaaattgaaatgagacaccactgcacacccactgagatgactataat-----------t---aaaaaag----aaaaga-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82824422 91 + 104043685 aagatgttcaacat--catt-------aaagaagaa--caaaaccaaactacaacaatatagcatctcacactcgctgggatgtctacagt-----------g---ataataa----aga----- i mm10.chr15 C 0 C 0 s canFam3.chr10 46095299 92 - 69331447 aaaatgtttgacat--cattagccatcagggaaatg--c---tcaaaatcacggggagatgccgcttcatactcactgggatggctagaat-----------a---caacagg------------ i canFam3.chr10 I 1645 C 0 s dasNov3.JH570235 72850 104 + 1056298 -agatgcttaatattacattagtcattctggaactg--taaatcaaaaccatcatgagataccacttcacacccactaagatagctttaat-----------a---ataataattttaaaa---- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=1501577.000000 s hg38.chr22_GL383582v2_alt 89234 159 + 162811 aagaaacacatatgacagcaa-gtgtcagggaggacctggggaaaggagaacactcatgcactgccactgagaacgtaaaatggggcagccattttggaaaacagtctgacagttccttaaaaggttaaaca--gag-----ttaccatatgatccagcaattctac s panTro5.chr22 28869125 157 + 37823149 --gaaacacatatgacagcaa-gtgtcagggaggacctggggaaaggagaacactcatgcactgccactgagaacgtaaaatggggcagccattttggaaaacagtctgacagttccttaaaaggttaaaca--gag-----ttaccatatgatccagcaattccac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41143726 157 + 50109623 --gaaacacatatgacagcaa-gtgtcagggaggacctggggaaaggagaacactcatgcactgccactgagaacgtaaaatggggcagccattttggaaaacagtctgacagttccttaaaaggttaaaca--gag-----ttaccatatgatccagcaattccac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3166476 158 + 4464012 a-gaaacacatatgacagcaa-gtgtcagggaggacctggggaaaagagaacactcatgcactgccactgagaacgtaaaatggggcagccattttggaaaacagtctgacagttccttaaaaggttcaaca--gag-----ttaccatatgatccagcaattccac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106662734 154 - 115148730 --acaacacacatgacaacaa-gtgtcagggaggacctggggaaaggagaacactcatgcactgccagtgagaacataaaatggggcagccattttggaaaacagtctgacagttccttaaaaggttaaaca--gag-----ttac---atgatccagcaattccac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84277226 158 + 92844088 a-cacacacacatgaagtcaa-gtgtcagggaggagctggagaaagaagaaccctcatgcactgccggtgagaatgtcaaacagggcagccactttggaaaacagtctgacaattccttaaaaggttaaaca--gag-----ttaccacatgatccagcaattccac i rheMac8.chr10 I 9 C 0 s macFas5.chr10 87622234 158 - 96509753 a-cacacacacatgaagtcaa-gtgtcagggaggagctggagaaagaagaaccctcatgcactgccggtgagaatgtaaaacggggcagccactttggaaaacagtctgacaattccttaaaaggttaaaca--gag-----ttaccacatgatccagcaattccac i macFas5.chr10 I 9 C 0 s macNem1.NW_012012688v1 7114065 158 - 13098629 a-cacacacacatgaagtcaa-gtgtcagggaggagctggagaaagaagaaccctcatgcactgccggtgagaatgtaaaacggggcagccactttggaaaacagtctgacaattccttaaaaggttaaaca--gag-----ttaccacatgatccagcaattccac i macNem1.NW_012012688v1 I 9 C 0 s cerAty1.NW_011999588v1 4080848 158 - 4483953 a-cacacacacatgaagtcaa-gtgtcagggaggagctggagaaaggagaaccctcatgcactgccggtgagaatgtaaaacggggcagccactttggaaaacagtctgacaattccttaaaaggttaaaca--gag-----ttaccacatgatccagcaattccac i cerAty1.NW_011999588v1 I 9 C 0 s chlSab2.chr19 24711037 158 + 33263144 a-cacacacaaatgaagtcaa-gtgtcagggaggagttggagaaagaagaatcctcatgcactgccggtgagaatgtaaaacggggcagtcactttggaaaacagtctgacaattccttaaaaggttaaaca--gag-----ttaccacatgatccagcaattccac i chlSab2.chr19 I 7 C 0 s colAng1.NW_012115588v1 929589 156 + 1946073 a-cacacacacatgaagtcaa-gtgtcagggaggagctggggaaaggagaaccctcatgcactgctggtgagaatgtaaaccggggcagccactttggaaaacagtctgacaattccttaaaaggttaa--a--gag-----ttaccacatgatccagcaattccac i colAng1.NW_012115588v1 I 8 C 0 s calJac3.chrUn_GL286373 1960380 158 - 2117846 a-cacaaaaccatgagagcaa-gcatcagggaggatctggggaaaggatatccctcatgcacttcccgtgggaatgtcaaatggggcagccactttggaaaacagtctggcagttccttaaaatgttacaca--gag-----ttaccatatgatccagcaattcttc i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8873574 158 - 16357246 a-aaaaaaaccatgagagcaa-gcatcagggaggatctggggaaaggagaaccctcatgcacttgcggtgggaatgtaaaacagggcagccactttggaaaacagtctggtagttccttaaaaggttacaca--gag-----ttaccgtatgatccagcaattctac i saiBol1.JH378157 I 1 C 0 s cebCap1.NW_016107750v1 1356733 157 - 1807191 a--acaaaaccacgagagcaa-gcatcagggaggatctggggaaaggagaacccttgtgcacttctggtgggaatgtaaaacagggcagccactttggaaaacagtctggcagttccttaaaaggttacaga--gag-----ttaccgtatgatccagcaattctac i cebCap1.NW_016107750v1 I 1 C 0 s aotNan1.NW_018512383v1 36658 156 + 5963231 a-aaaaaaaacacgacag--a-gcatcagggaggatctggcgaaaggagaaccctcatgcacttccggtgggaatgtaaaacagggcagccactttggaaaacagtctggcagttccttaaaaggttacaca--gag-----ttaccatatgatccagcaattctac i aotNan1.NW_018512383v1 I 1 C 0 s otoGar3.GL873526 36300311 132 - 42659167 ----------tataataacaa-atatcagtgaggatgtggagaaacccaaatcctcacatattgctagtgggaat----------------acttaacaaaacaggccacaaattcctcaccagggtcaaca--gaa-----ttaccatatga-ccagcaattccat i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82824513 141 + 104043685 ----------cttgtaagtat-gt-ttggtaaggatactgaaaaattggaatcctaatacattgttagtgggaatgcaaaat-gtgtatatattttggaaaactatatggctattcctctaaaggttaagca----------ttatcatatg---taactgttctac i mm10.chr15 C 0 I 221 s canFam3.chr10 46095391 153 - 69331447 --------caggtaacaacaa-gggtcagtgaggatatggagaaactgaagcccttatatactgctgg-aaggatggaaaatgattcagccactctggaaaa--gtctgaatgtccttccaaaggttaaatg--tagaggtactaccatatgattcagtaattccac i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 72954 150 + 1056298 -----------aggaaaataatgtgttggcaaggatgcagagaattgggaacccttgtacactgctgatgggaatggaaaatggtggaggcaccttagaaaata-tttggcagttcctcaaagaggtaaacatggac-----ttggcatatgttccagcaattctac i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e manLeu1.NW_012102031v1 13985051 7313 - 14338769 I a score=1298754.000000 s hg38.chr22_GL383582v2_alt 89393 132 + 162811 tcccaggtacacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctatagcagcattattcataacagtcaaaaagtgg-aagtaacccaaatgtacagca-----a-----------------------------------------------AGCCCACAGAGAT s panTro5.chr22 28869282 132 + 37823149 tcccaggtacacatccaagagaacggaaaaca-tgttcacacaaatgcttgcatgggaatgttctatagcagcattattcataacagtcaaaaagtgg-aagtaacccaaatgtacagca-----a-----------------------------------------------AGCCCACAGAGAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41143883 132 + 50109623 tcccaggtacacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgggaatgttctatagcagcattattcctaacagtcaaaaagtgg-aagtaacccaaatgtacagca-----a-----------------------------------------------AGCCCACAGAGAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3166634 130 + 4464012 tcccaggtacacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctatagcagcattattcataacagtcaaaaagtgg-aagtaacccaaatgtacagca-----a-----------------------------------------------AGCC--CAGAGAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106662888 132 - 115148730 tcccaggtacacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctgtagcagcattattcataacagtgaaaaagtgg-aagtaacccaaatgtacagca-----a-----------------------------------------------AGTCCACAGAGAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84277384 132 + 92844088 tcccaggtatacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctacagcagcattattcataatagtcaaaaagtgg-aagtaacccaaatacacagca-----a-----------------------------------------------AGTCCACAGAGAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87622392 132 - 96509753 tcccaggtatacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctacagcagcattattcataatagtcaaaaagtgg-aagtaacccaaatacacagca-----a-----------------------------------------------AGTCCACAGAGAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7114223 132 - 13098629 tcccaggtatacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctacagcagcattattcataatagtcaaaaagtgg-aagtaacccaaatacacagca-----a-----------------------------------------------AGTCCACAGAGAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4081006 132 - 4483953 tcccaggtatacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctacagcagcattattcataatagtcaaaaagtgg-aagtaacccaaatacatagca-----a-----------------------------------------------agtccacagagat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24711195 132 + 33263144 tcccaggtatacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctacagcagcattattcataatagtcaaaaagtgg-aagtaacccaaatacacagca-----a-----------------------------------------------AGTCCACAGAGAT i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 929745 132 + 1946073 tcccaggtatatatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtaaatgttctacagcagcattattcataatagtcaaaaagtgg-aagtaacccaaatatacagca-----a-----------------------------------------------AGTCCACAGAGAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1960538 137 - 2117846 tcccaggtatacatccaagagaacagaaaaca-tgttcatacaaatgcttgtatgtgaatgctctatagcagcattattcataatagtcaaaaagtag-aaataacccaaatgtacagcaCAGGAA-----------------------------------------------AGTCCACAGAGAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8873732 137 - 16357246 tcccaggtatacatccaagagaaaagaaaaca-tgttcatacaaatgcttgtatgtgaatgctctatagcagcattattcgtaacagtcaaaaagtag-aaataacccaaatgtacagcaCAGGGA-----------------------------------------------AGTCCACAGAGAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1356890 137 - 1807191 tcccaggtatacatccaagagaacagaaaaca-cgttcatacaaatgcttgtatgtgaatgctctatagcagcattatttataatagtcaaaaagtag-aaataacccaaatgtacagcaCAGGAA-----------------------------------------------AGTCCACAGAGAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 36814 137 + 5963231 tctcaggtatacatccaagagaacagaaaaca-tgttcatacaaatgcttgtatgtgaatactctatagcagcattattcataatagtcaaaaagtag-aaataacccaaatgtacagcaCAGGAA-----------------------------------------------AGTCCACAGAGAT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36300443 126 - 42659167 tgttaggcatacactcaagagaactgaaaaca-tacccacacacagacttgtatatgagtgttcta------cattattcataatagtcaaaaagcag-gggcaacccaaacgtccatca-----a-----------------------------------------------ccaacaaatggat i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46095544 154 - 69331447 tcctaggt-tacatctaagacaattgaagatattgtctatgtaga------cttgtgagtgttc-acagcaacttttcccataataataaaaaagtggaaaatcatctaaacgtatatca-----attgatgaac-gataagtaaaatgtggc------------------ttatccttaagacat i canFam3.chr10 C 0 I 8 s dasNov3.JH570235 73104 157 + 1056298 -------------tcccaatcaaacgaaaaca-catccacacaaagacttgcatgcaagtgtcc-atagcagca-------gagcagccaaaaagtga-aaacaatctaaatct-catca-----acctatgaatggatgaataaagtatggtatatatctatacaatggaatattacgtgggaat i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82824654 221 + 104043685 I e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e manLeu1.NW_012102031v1 13985051 7313 - 14338769 I a score=435191.000000 s hg38.chr22_GL383582v2_alt 89525 59 + 162811 AGAAAGGATTGAG--------------T-------------CCAACAGA-----GCTTAAAGG--GA-----AAAAAAAA---------------------TCATAA-------------------------------aa---------atttaaa---aaa-------------------- s panTro5.chr22 28869414 61 + 37823149 AGAAAGGATTGAG--------------T-------------CCAACAAA-----GCTTAAAGG--AA-----AAAAAAAAA-------------------ATCATAA-------------------------------AA---------ATTTAAA---AAa-------------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41144015 60 + 50109623 AGAAAGGATTGAG--------------T-------------CCAACAGA-----GCTTAAAGG--AA-----AAAAAaaa--------------------atcataa-------------------------------aa---------atttaaa---aaa-------------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3166764 60 + 4464012 AGAAAGGATTGAG--------------T-------------CCAACAGA-----GCTTAAAGG--AA-----AAAAAAAA--------------------ATCATAA-------------------------------aa---------atttaaa---aaa-------------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106663020 61 - 115148730 AGAAAGGATTGAG--------------T-------------CCAACAGA-----GCTTAAAGG--AA-----AAAAAAAAA-------------------ATCATAA-------------------------------AT---------ATTTAAA---AAA-------------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84277516 61 + 92844088 AGAAAGGATTGGG--------------T-------------CCAACAGA-----GCTTAAAGG--AA-----AAAAAAaaa-------------------atcataa-------------------------------aa---------attttaa---aaa-------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87622524 61 - 96509753 AGAAAGGATTGGG--------------T-------------CCAACAGA-----GCTTAAAGG--AA-----AAAAAAaaa-------------------atcataa-------------------------------aa---------attttaa---aaa-------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7114355 61 - 13098629 AGAAAGGATTGGG--------------T-------------CCAACAGA-----GGTTAAAGG--AA-----AAAAAAaaa-------------------atcataa-------------------------------aa---------attttaa---aaa-------------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4081138 59 - 4483953 agaaaggattGGG--------------T-------------CCAACAGA-----GCTTAAAGG---------AAAAAAaaa-------------------atcataa-------------------------------aa---------attttaa---aaa-------------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24711327 61 + 33263144 AGAAAGGACTGGG--------------T-------------CCAACAGA-----GCTTAAAGG--AA-----AAAAAAaaa-------------------atcataa-------------------------------aa---------attttaa---aaa-------------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13992364 61 - 14338769 agaaaGGATTGGG--------------T-------------CCAACAGA-----GCTTAAAGG--AA-----AAAAAAAAA-------------------ATCATAA-------------------------------AA---------ATTTTAA---AAa-------------------- i manLeu1.NW_012102031v1 I 7313 C 0 s colAng1.NW_012115588v1 929877 63 + 1946073 AGAAAGGATTGGG--------------T-------------CCAACAGA-----GCTTAAAGGAAAA-----AAAAAAAAA-------------------ATCATAA-------------------------------aa---------atttaaa---aaa-------------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1960675 61 - 2117846 AGAAAGGATTGAG--------------T-------------CCAACAGA-----GCTTCAAGG--AA-----AAAAAAaaa-------------------attgtaa-------------------------------aa---------atttata---aaa-------------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8873869 58 - 16357246 AGAAAGGACTGAG--------------T-------------CCAACAGA-----GCTTCAAGA--AA-----AAaaaaaaa----------------------gtaa-------------------------------aa---------atttata---aaa-------------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1357027 57 - 1807191 AGAAAGGATTGAG--------------T-------------CCAACAGA-----GCTTCAAGG--AA-----AAaaaa-----------------------tcgtaa-------------------------------aa---------atttata---aaa-------------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 36951 58 + 5963231 AGAAAGGATTGAG--------------T-------------CCAACAGA-----GCTTCAAGG--AA-----AAAAAAA----------------------TTGTAA-------------------------------aa---------atttata---aaa-------------------- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36300569 102 - 42659167 aaaaaagatatgg--------------t----atactcttcacaacaaaatactgtttagcaa--ta-----aaaatgaacgaagt--gctaatata--tgtcacaa-------------------------------aatggagcattatttgaagtcaaa-------------------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46095706 123 - 69331447 aataaagatgaag--------------tattgatac-----acatcaca-----acatggaga--aaccgggaaaaacacaacactaagtgaagacg-ttgtcataaagagcacatattgtatgattccacttacatgaa---------atgtcca---gaa-------------------- i canFam3.chr10 I 8 I 20 s dasNov3.JH570235 73261 145 + 1056298 aaaaaggaatgaagtactgatatatgct-------------gcaacaca-----gatgaaact--ta-----aaaacacaatgctacgtggaagaagccagtcacaaagaccacatattttatgactccatttatatgaa---------atgtcta---gaataggcaaatctatggagaca i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82824654 221 + 104043685 I e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=36290.000000 s hg38.chr22_GL383582v2_alt 89584 2 + 162811 ga s panTro5.chr22 28869475 2 + 37823149 ga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41144075 2 + 50109623 ga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3166824 2 + 4464012 ga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106663081 2 - 115148730 GA i nomLeu3.chr7b C 0 M 100 s rheMac8.chr10 84277577 2 + 92844088 ga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87622585 2 - 96509753 ga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7114416 2 - 13098629 ga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4081197 2 - 4483953 ga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24711388 2 + 33263144 ga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13992425 2 - 14338769 ga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 929940 2 + 1946073 ga i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1960736 2 - 2117846 ga i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8873927 2 - 16357246 ga i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1357084 2 - 1807191 ga i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 37009 2 + 5963231 ga i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36300671 2 - 42659167 ga i otoGar3.GL873526 C 0 I 69 s mm10.chr15 82824875 2 + 104043685 ga i mm10.chr15 I 221 C 0 s canFam3.chr10 46095849 2 - 69331447 ga i canFam3.chr10 I 20 C 0 s dasNov3.JH570235 73406 2 + 1056298 ga i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I a score=484431.000000 s hg38.chr22_GL383582v2_alt 89586 91 + 162811 aaacagaatagtggtt-gccagggactggagggaagggaagggagat-------------gagt------------------------------------gctgctaa-----------------------------------------tggg-tggg-aa-g-------------------------------------------------------------------------------------------------------------------------tttttttatgaagt-gacaaaaa------------------------------------------------------------------------------------------------- s panTro5.chr22 28869477 87 + 37823149 aaacagaatagtggtt-gccag----tccagggaagggaagggagat-------------gagt------------------------------------gctgctaa-----------------------------------------tggg-tggg-aa-g-------------------------------------------------------------------------------------------------------------------------tttttttatgaagt-ggcaaaaa------------------------------------------------------------------------------------------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41144077 90 + 50109623 aaacagaatagtggtt-gccagggactggagggaagggaagggagat-------------gagt------------------------------------gctgctaa-----------------------------------------tggg-tggg-aa-g--------------------------------------------------------------------------------------------------------------------------ttttttatgaagt-ggcaaaaa------------------------------------------------------------------------------------------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3166826 90 + 4464012 aaacagaatagtggttggccagggactggagggaagggaagggagat-------------tagt------------------------------------gctgctaa-----------------------------------------tggg-tggg-aa-g-------------------------------------------------------------------------------------------------------------------------ttttttaatgaagt-gacaaa--------------------------------------------------------------------------------------------------- i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84277579 90 + 92844088 aaacagaatagtggtt-gccagggactggagagaggggaagggaggt-------------aagt------------------------------------gctactaa-----------------------------------------tggg-tagg-aa-t--------------------------------------------------------------------------------------------------------------------------ttttttatgaagt-gacaaaca------------------------------------------------------------------------------------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87622587 90 - 96509753 aaacagaatagtggtt-gccagggactggagagaggggaagggaggt-------------aagt------------------------------------gctactaa-----------------------------------------tggg-tagg-aa-t--------------------------------------------------------------------------------------------------------------------------ttttttatgaagt-gacaaaCA------------------------------------------------------------------------------------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7114418 90 - 13098629 aaacagaatagtggtt-gccagggactggagagaggggaagggaggt-------------aagt------------------------------------gctactaa-----------------------------------------tggg-tagg-aa-t--------------------------------------------------------------------------------------------------------------------------ttttttatgaagt-gacaaaCA------------------------------------------------------------------------------------------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4081199 90 - 4483953 aaacagaatagtggtt-gccagggactggagagaggggaagggaggt-------------aagt------------------------------------gctactaa-----------------------------------------tggg-tagg-aa-t--------------------------------------------------------------------------------------------------------------------------ttttttatgaagt-gacaaaca------------------------------------------------------------------------------------------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24711390 90 + 33263144 aaacagaatagtggtt-gccagggactggagagaggggaagggaggt-------------aagt------------------------------------gctactaa-----------------------------------------tggg-tagg-aa-t--------------------------------------------------------------------------------------------------------------------------ttttttatgaagt-gacaaaca------------------------------------------------------------------------------------------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13992427 86 - 14338769 aaacagaatagtggtt-gtcagggactggagagaggggaagggaggt-------------aagt------------------------------------gctactaa-----------------------------------------tggg-tagg-aa-t--------------------------------------------------------------------------------------------------------------------------ttttttatgaagt-g----aca------------------------------------------------------------------------------------------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 929942 90 + 1946073 aaacagaatagtggtt-gccagggactggagggaggggaagggaggt-------------aagt------------------------------------gctactaa-----------------------------------------tggg-tagg-aa-t--------------------------------------------------------------------------------------------------------------------------ttttttatgaagt-gacaaaca------------------------------------------------------------------------------------------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1960738 71 - 2117846 aaacagaatagtggtt-gccagggactggaggaaggggaagg------------------------------------------------------------------------------------------------------------ggg-TAGC-AATT--------------------------------------------------------------------------------------------------------------------------TTTTTTATGAACT-GACAAA--------------------------------------------------------------------------------------------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8873929 70 - 16357246 aaacagagtagtggtt-gccagggaatggaggaaggggaagg------------------------------------------------------------------------------------------------------------ggg-tagg-aa-t--------------------------------------------------------------------------------------------------------------------------ttttttatgAACT-GACAAA--------------------------------------------------------------------------------------------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1357086 72 - 1807191 aaacagaatagtggtt-gccagggactggaggaaggggaagg------------------------------------------------------------------------------------------------------------cgg-aagg-aa-t--------------------------------------------------------------------------------------------------------------------------ttttTTATGAACT-GACAAAAA------------------------------------------------------------------------------------------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 37011 70 + 5963231 aaacagaatagtggtt-gccagggactggaggaaggggaaga------------------------------------------------------------------------------------------------------------ggg-tagg-aa-t--------------------------------------------------------------------------------------------------------------------------ttttTTATGAACT-GACAAA--------------------------------------------------------------------------------------------------- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36300742 203 - 42659167 aggtagattagtggct-gccaaggttggggggggggtgagta----------------------------------------------------------acagctaa-----------------------------------------tgtg-taga-aa-tagaaattttttttttttttttttttgcagtttttggctggggctgggtttgaacccaccacctccggcatatggggccagcaccccactccttttgagccataggcgccaccccagaaattttttttaatgaagt-gataaaaa------------------------------------------------------------------------------------------------- i otoGar3.GL873526 I 69 I 113 s mm10.chr15 82824877 182 + 104043685 aagtgaatctctaatt-gccaacagctggagtgaggggaaggaaggtgttaatatttcacaagtgatgaaaacctaaatgttaaatattttggagtaatggctactcaactccacaaacacatagaaaccactgaattgtatgtacacttaag-taggtaa-c--------------------------------------------------------------------------------------------------------------------------tcataaatgaactagatgaaca------------------------------------------------------------------------------------------------- i mm10.chr15 C 0 I 4 s canFam3.chr10 46095851 85 - 69331447 aagtaaatcagtgttt-gccaggggctggggtgggtggcagggggga-------------gtg-------------------------------------accactaa-----------------------------------------tggg-tagg-aa-t------------------------------------------------------------------------------------------------------------------------------ttacgaggt-ggtgaaaa------------------------------------------------------------------------------------------------- i canFam3.chr10 C 0 I 60 s dasNov3.JH570235 73408 185 + 1056298 aaacagattagaggtt-tccaggggcaggatgaaggggaaatggagt-------------gagt---------------------------------------gctaa-----------------------------------------tgggctggg-gg-t--------------------------------------------------------------------------------------------------------------------------tcttttttgggtt-caaaaatttactgtgattgtcgtaaaactcttgaatatactaaaagccattgactcatatagaccttaaataggtaaactatatggtatgcgaattatatctcaa i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e nomLeu3.chr7b 106663083 100 - 115148730 M a score=-218224.000000 s hg38.chr22_GL383582v2_alt 89677 57 + 162811 aaaaaaaaaaa----aaa---------------------------------------------------------------------------------------------------agaaaaga----------aaa---gaaaaa---------a-aaca-----aCGACAACAGAGAGAATCAAA s panTro5.chr22 28869564 62 + 37823149 aaaaaaaaaaa----aaaga-----------------------------------------------------------------------------------------------aaagaaaaga----------aaa---gaaaaa---------acaaca-----acaacaaCAGAGAGAATCAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41144167 53 + 50109623 aaaaaaaaa------------------------------------------------------------------------------------------------------------agaaaaga----------aaa---gaaaaa---------acaaca-----acaacaacaGAGAGAATCAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3166916 42 + 4464012 ---------------------------------------------------------------------------------------------------------------------aaAAAAGA----------AAA---GAAAAA-----------AACA-----ACAACAACAGAGAGAATCAAA i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84277669 25 + 92844088 a--------------------------------------------------------------------------------------------------------------------ACAAAAGA-----------------------------------------------AACAGAGAGAATCAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87622677 25 - 96509753 A--------------------------------------------------------------------------------------------------------------------ACAAAAGA-----------------------------------------------AACGGAGAGAATCAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7114508 25 - 13098629 A--------------------------------------------------------------------------------------------------------------------ACAAAAGA-----------------------------------------------AACGGAGAGAATCAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4081289 25 - 4483953 a--------------------------------------------------------------------------------------------------------------------acaaaaga-----------------------------------------------aacggagagAATCAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24711480 25 + 33263144 a--------------------------------------------------------------------------------------------------------------------acaaaaga-----------------------------------------------aatggagagAATCAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13992513 25 - 14338769 a--------------------------------------------------------------------------------------------------------------------aCGAAAGA-----------------------------------------------AACGGAGAGAATCAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 930032 25 + 1946073 a--------------------------------------------------------------------------------------------------------------------acaaaaga-----------------------------------------------aatggagagAATCAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1960809 19 - 2117846 --------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------------------AATGGAGAGAATCAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8873999 21 - 16357246 ------------------------------------------------------------------------------------------------------------------------AGAAA-----------------------------------------------AATGGAGAGAATCAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1357158 23 - 1807191 A----------------------------------------------------------------------------------------------------------------------AAAAAA-----------------------------------------------AAAGGAGAGAAACACA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 37081 19 + 5963231 --------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------------------AATGGAGAGAATCAAA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36301058 83 - 42659167 --aaaCACAGA----ATGGATAA-----------------------------------------------------------------------------------------TACAAACAGAACAAGGTCAGGAGAAC---GAGAAATATATG--AACAAGG-----GGAAAAGGGGACAAAATCAAA i otoGar3.GL873526 I 113 C 0 s mm10.chr15 82825063 113 + 104043685 ---------------------aggtatttttaaaCTTGCTCTGTCATTGTAGCCTCC---------------------------------TCTCTACA----TTTTAGAACTTACAAATAGGAGA----------AAA---ATAAGGGAGACAATAAAAATA----TACAGAAGGGGAGATAATGAAT i mm10.chr15 I 4 C 0 s canFam3.chr10 46095996 169 - 69331447 -------aata----gcaaataaatagcaaatcatgtgtgaattatgtgaataaaacttattaTGATTCTGTTTCACTCTTTTATTATCCTCTCTGCATTCCTTTAAGAATTTACAAACAGAACAGGGTCAGAAGAGA---CAGAAAAAAACTACAAAGAAA----GGTAAGAAGTCAGAGAATCAG- i canFam3.chr10 I 60 C 0 s dasNov3.JH570235 73593 121 + 1056298 ---aaaagttactttaaaaaTTACTGCAATTCACTCCTTTCTTCATTT------------------------------------------------------CTTCAGAATCTACAAACAGAATA----------GAATAGGAGAGAGAAAAAATAACTACAGAGGGGGAAAAAGGGAGAGAATGAAA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5086098 3286 - 6317780 I e micMur3.chr7 5720914 3708 + 108171978 I e nomLeu3.chr7b 106663083 100 - 115148730 M a score=234375.000000 s hg38.chr22_GL383582v2_alt 89734 20 + 162811 CTG-TATGTCCTAATCCTTTG s panTro5.chr22 28869626 20 + 37823149 CTG-TATGTCCTAATCCTTTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41144220 20 + 50109623 CTG-TATGTCCTAATCCTTTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3166958 20 + 4464012 CTG-TATGTCCTAACCCTTTG i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84277694 20 + 92844088 CTG-TATGTCCTAACCCTTTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87622702 20 - 96509753 CTG-TATGTCCTAACCCTTTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7114533 21 - 13098629 CTGTTATGTCCTAACCCTTTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4081314 20 - 4483953 CTG-TATGTCCTAACCCTTTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24711505 20 + 33263144 CTG-TATGTCCTAACCCTTTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13992538 20 - 14338769 CTG-TATGTCCTAACCCTTTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 930057 19 + 1946073 CTG-TATGTCCTAACCCTTT- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1960828 20 - 2117846 CTG-TATGTCCTAACTCTCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8874020 20 - 16357246 CTG-AATGTCCTAACTCTCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1357181 20 - 1807191 CTG-TACGTCCTAACTCTCTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 37100 20 + 5963231 CTG-TATGTCCTAACTCTTTG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5089384 20 - 6317780 CTG-TATGTCTTAACCCTTTG i proCoq1.NW_012136747v1 I 3286 C 0 s otoGar3.GL873526 36301141 20 - 42659167 TTG-TACGTCCTCATCCTTTG i otoGar3.GL873526 C 0 I 24 s mm10.chr15 82825176 20 + 104043685 TTG-TATCTTCTAGCTCTCTA i mm10.chr15 C 0 C 0 s canFam3.chr10 46096165 18 - 69331447 -TG-TCCGTCCCAGCCTTCA- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 73714 20 + 1056298 TTC-TATATTCCAACCTTTAC i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5720914 3708 + 108171978 I e nomLeu3.chr7b 106663083 100 - 115148730 M a score=4234351.000000 s hg38.chr22_GL383582v2_alt 89754 261 + 162811 GATGCTCTGGACAAGGGTCTGTGGTCTCCTCTTACCTGCATCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAAGGGAAAAGTCAGGCATGTCAGTATC-CCAGATTTGGCCCTCTCCTCCAGGCCTTCCCTGGTCCCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCCGTGGTGGCAGGATGA s panTro5.chr22 28869646 261 + 37823149 GATGCTCTGGACAAGGGTCTGTGGTCTCCTCTTACCTGCATCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAAGGGAAAAGTCAGGCATGTCAGTATC-CCAGATTTGGCCCTCTCCTCCAGGCCTTCCCTGGTCCCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCCGTGGTGGCAGGATGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41144240 261 + 50109623 GATGCTCTGGACAAGGGTCTGTGGTCTCCTCTTACCTGCATCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAAGGGAAAAGTCAGGCATGTCAGTATC-CCAGATTTGGCCCTCTCCTCCAGGCCTTCCCTGGTCCCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCCGTGGTGGCAGGATGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3166978 261 + 4464012 GATGCTCTGGACAAGGGTCTGTGGTCTCCTCTTACCTGCATCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAAGGGAAAAGTCAGGCATGTCAGTATC-CCAGATTTGGCCCTCTCCTCCAGGCCTTCCCTGGTCCCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCCGTGGTGGCAGGATGA i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84277714 260 + 92844088 GACGTTCTGGACACGGGTCTGTGGTCTTCTCTTACCTGCATCAACGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAA-GGAAAAGTCAGGCATGTCAGTATC-CCAGATTTGGCCCTCTCCTCCAGGCCTTCCCTGGTCCCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCTGTGGTGGCAGGATGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87622722 260 - 96509753 GACGTTCTGGACACGGGTCTGTGGTCTTCTCTTACCTGCATCAACGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAA-GGAAAAGTCAGGCATGTCAGTATC-CCAGATTTGGCCCTCTCCTCCAGGCCTTCCCTGGTCCCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCTGTGGTGGCAGGATGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7114554 260 - 13098629 GACGTTCTGGACACGGGTCTGTGGTCTTCTCTTACCTGCGTCAACGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAA-GGAAAAGTCAGGCATGTCAGTATC-CCAGATTTGGCCCTCTCCTCCAGGCCTTCCCTGGTCCCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCTGTGGTGGCAGGATGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4081334 260 - 4483953 GACGTTCTGGACACGAGTCTGTGGTCTTCTCTTACCTGCATCAACGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAA-GGAAAAGTCAGGCATGTCAGTATC-CCAGATTTGGCCCTCTCCTCCAGGCCTTCCCTGGTCTCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCTGTGGTGGCAGGATGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24711525 260 + 33263144 GACGTTCGGGACACGGGTCTGTGGTCTCCTCTTACCTGCATCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAA-GGAAAAGTCAGGCATGTCAGTATC-CCAGATTTGGCCCTCTCCTCCAGGCCTTCCCTGATCCCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCTGTGGTGGCAGGATGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13992558 260 - 14338769 GACGTTCTGGACACGGGTCTGTGGTCTTCTCTTACCTGCATCAACGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAA-GGAAAAGTCAGGCATGTCAGTATC-CCAGATTTGGCCCTCTCCTCCAGGCCTTCCCTGGTCCCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCTGTGGTGGCAGGATGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 930076 252 + 1946073 --------GGACAGGGGTCTGTGGTCTCCTCTTACCTGCATCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAA-GGAAAAGTCAGGCATGTCAGTATC-CCAGATTTGGCCCTCTCCTCCAGGCCTTCCCTGGTCCCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCTGTGGTGGCAGGATGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1960848 261 - 2117846 GATGCTCTGGACAGGGGTCTGTGGTCTCCTCTTACCTGCATCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAAGGGAAAAGTCAGGCATGTCAGTATC-CCAGATTCAGCCCTCTCCTCCGGCCCTTCCATGGTCCCCATCTGTTAGACCTC---AGCATGTGTCTCTGTGGTTAGAGGAGTCTGTGGTGGCAGGATGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8874040 261 - 16357246 GATGCTCTGGACAGGGGTCTGTGGTCTCCTCTTACCTGCATCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCACCTGCCTCCTGGCAGTGGGAACATTTCTGAAAAGAAGGGAAAAGTCAGGCATGTCAGTATC-CCAGATTCAGCCCTCTCCTCTGGCCCTTCCCTGGTTCCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCTGTGGTGGCAGGATGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1357201 261 - 1807191 GATGCTCTGGACAGGGGTCTGTGGTCTCCTCTTACCTGCATCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAAGAAGGGAAAAGTCAGGCATGTCAGTATC-CCAGATTCAGCCCTCTCCTCCAGCCTTTCCCTGGTCCCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCTGTGGTGGCAGGATGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 37120 261 + 5963231 GATGCTCTGGACAGGGGTCTGTGGTCTCCTCTTACCTGCATCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAAGGGAAAAATCAGGCATGTCAGTATC-CCAGATTCAGCCCTCTCCTCCGGCCCTTCCCTGGTCCCCATCTGTTAGACCTC---AGCACGTGTCTCTGTGGTTAGAGGAGTCTGTGGTGGCAGGACGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5724622 254 + 108171978 GATGCTCTGGACAAAGTTGTGGGGTCCCATCTTACCTGCATCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCACCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAAGGAAAAAGTCAGGCATATTGGTATC-CCAGATTCCCCCCTTTCCTCCA----------GGTCCCCATTGGTTAGACCTCAGCAGCATGTGTCTCTGTGGTTAGAGGAATTTGTGGTGGCAGGATGG i micMur3.chr7 I 3708 C 0 s proCoq1.NW_012136747v1 5089404 251 - 6317780 GATGCTCTGGACAAGG-TGTGGGGTCCCGTCTTACCTGCATCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAAAGAAAAAGTCAGGCATGTCGGTATC-CCAGATTCACCCC--TCCTCCA----------GGTCCCCATTGGTTAGATCTCAGGAGCACGTGTTTCTGTGGTTAGAGGAACTTGTGGTAGCAGGATGG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36301185 254 - 42659167 GATACTCTGGACAAGAGTATGGGGTCCGGTCTTACCTGCGTCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTATAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAACGAAGGAAAAAGTCAGGCATGTCAGTATC-CCAGACTCATCCCTCCTGTCCA----------GGTCCCCATCAGTCAGACCTCAGTAGCATGTGTCTCTGTGGTTAGAAGTGTTTGTGGTAGCAGGATGG i otoGar3.GL873526 I 24 I 122 s mm10.chr15 82825196 252 + 104043685 GATCCTCTCAAAAAGGGTGTGTGGTC-CAACTTACCTGCGTCAATGGCACATGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAAGTAGCGCCAGCCTCCTGGCAGTGGGAGCATTTCTGAAAGGAA------AATAAGGCATGTTAGTAACTCTAGACCAGCCCTTTTCTTGCAGGCCTTCCCTA--CCTCATTAGTTCGGTCTC---AGCATG-GCCTTTGTGGTTGGAGGGATCTGTGGTGGTAGGCTAG i mm10.chr15 C 0 C 0 s canFam3.chr10 46096183 235 - 69331447 GAGGCTCT-GACAAGGG-CTGTGGTCCCATCTTACCTGCGTCAATGGCACACGGGTAGTGGTATCGGAAGGAGCAGCCTTTGTTGTAACAGCCCAAGGTGGCACCTGCCTCCTGGCAATGGGAACATTTCTGAAAAGAA---AGAAATCTGGCATGTCAGCACC-CCAGATTCAACCCTCTCCCCCAGGTCTTCCCTAAGCCCCATC----------------------TCTCTGTGGTTACAGG--TCCATGGTGGGAGGATGG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 73734 243 + 1056298 ATTGTTCTGGACAAGGGCCTATGATCCCATCTTACCTGCATCAATGGCACACGGGTAATGGTATCGGAAGGAGCAGCCTTTGTTGTAGCAGCCCAAGGTGGCGCCTGCCTCCTGGCAGTGGGAACATTTCTGAAAGGAAGGAAGAAGTCAGGCATGTCAGTATC------------------CTCCGGGCCTTCTCCAGACCCCGT-GGTTAGACCTT---AGCACTTGTCTCTGTGGTTACAGGAGTCTGTGGGGGCAGAACAA i dasNov3.JH570235 C 0 C 0 e nomLeu3.chr7b 106663083 100 - 115148730 M a score=10489987.000000 s hg38.chr22_GL383582v2_alt 90015 641 + 162811 GCTGGTCAATTTCTAAATGCCATTCACTGACCACACCATGGGAAGGGATCCAGCAATAATGTTTTAGACCAAGCCTCACAAATGTTCTCAAATCAA----------CAATACAGCAGGGTGAGATGAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-CCCCAGCCCTGCCTCTGGTACCCCCGCCATCCACCCACCCACACAC---TATGCCAGGCAT------TTCCTTGCTGCTA-TCGTGAGCGGCCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGGTAAGAG---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAGAAGTGGAATTTGGTTTCTAGTTCTT---GTATTTGTAAGAAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATAC------ATTTCCC-TTTTCAGAAAATATGGGCTCCTGTGTGCAAATGGTATTTTTATACA-TGAATCTTATTTTAAATGCACCAGAAAACCTGCCATGAATTTCTGGC-------------------------TAAGTGAGACATTATTTTG-TAATTGAGACACTCCTCCTT-ATATGGTCAGGTTTTCTTAAAGTGGGGCACATCTCTGTCAGCCCTGTGATGTGGCTGCTGTGAGTGCTC-ATCCTGTCAGG-TAAGAAA--TGTGTCC s panTro5.chr22 28869907 641 + 37823149 GCTGGTCAATTTCTAAATGCCACTCACTGACCACACCATGGGAAGGGATCCAGCAATAATGTTTTAGACCAAGCCTCACAAATGTTCTCAAATCAA----------CAATGCAGCAGGGTGAGATGAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-CCCCAGCCCTGCCTCTGGTACCCCCGCCATCCACCCACCCACACAC---TATGCCAGGCAT------TTCCTTGCTGCTA-TCGTGAGCGGCCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGGTAAGAG---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAGAAGTGGAATTTGGTTTCTAGTTCTT---GTATTTGTAAGAAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATAC------ATTTCCC-TTTTCAGAAAATATGGGCTCCtgtgtgcaaatggtatttttataca-tgaatcttattttaaatgcaccagaaaacctgccatgaatttctggc-------------------------taagtgagacattattttg-taattgagacactcctccTT-ATATGGTCAGGTTTTCTTAAAGTGGGGCACATCTCTGTCAGCCCTGTGATGTGGCTGCTGTGAGTGCTC-ATCCTGTCAGG-TAAGAAA--TGTGTCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41144501 641 + 50109623 GCTGGTCAATTTCTAAATGCCACTCACTGACCACACCATGGGAAGGGATCCAGCAATAATGTTTTAGACCAAGCCTCACAAATGTTCTCAAATCAA----------CAATGCAGCAGGGTGAGATGAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-CCCCAGCCCTGCCTCTGGTACCCCCGCCATCCACCCACCCACACAC---TATGCCAGGCAT------TTCCTTGCTGCTA-TCGTGAGCGGCCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGGTAAGAG---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAGAAGTGGAATTTGGTTTCTAGTTCTT---GTATTTGTAAGAAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATAC------ATTTCCC-TTTTCAGAAAATATGGGCTCCtgtgtgcaaatggtatttttataca-tgaatcttattttaaatgcaccagaaaacctgccatgaatttctggc-------------------------taagtgagacattattttg-taattgagacactcctccTT-ATATGGTCAGGTTTTCTTAAAGTGGGGCACATCTCTGTCAGCCCTGTGATGTGGCTGCTCTGAGTGCTC-ATCCTGTCAGG-TAAGAAA--TGTGTCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3167239 641 + 4464012 GCTGGTCAATTTCTAAATGCCACTCACTGACCACACCACGGGAAGGGATCCAGCAATAATGTTTTAGACCAAGCCTCACAAATGTTCTCAAATCAA----------CAATACAGCAGGGTGAGATAAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-CCCCAGCCCTGCCTCTGGTGCCCCCGCCATCCACCCACCCACACAC---TATGCCAGGCAT------TTCCTTGCCGCTA-TCGTGAGCGGCCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGGTAAGAG---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAGAAGTGGAATTTGGTTTCTAGTTCTT---GTATTTGTAAGAAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATAC------ATTTCCC-TTTTCAGAAAATATGGGCTCCtgtgtgcaaatggtatttttataca-tgaatcttattttaaatgcaccagaaaacctGCCATGAATTTCTGGC-------------------------TAAGTGAGACATTATTTTG-TAATTGAGACACTCCTCCTT-ATATGGTCAGGTTTTCTTAAAGTGGGGCACATCTCTGTCAGCCCTGTGATGTGGCTGCTGTGAGTGCTC-ATCCTGTCAGG-TAAGAAA--TGTGTCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106663183 643 - 115148730 GCTGGTCAGTTTCTAAATGCCACTCTCTGACCACACCATGGGAAGGGATCCAGCAATAATGTTTTAGACCAAGCCTCACAAATGTTCTCAAATCAA----------CAA--CAGCAGGGTGAGACAAGCAAT---C--------CATGTCATAAAGGACATGCCA--AA--GTGGGGT-CCTCAGCTCTGCCTCTGGTGCCCCCGCCATCCACCCACCCACACAC---TCTGCCAGGCAT------TTCCTTGCTGCTA-TCATAAGCGGCCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGGTAAGAG---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAGAAGTGGAATTTGGTTTCTAGTTCTT---GTATTTGT---AAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATACAAGTATATTTCCC-TTTTCAGAAAATATGGGCTCCTGTGTGCAAATGGTATTTTTATACA-TGAATCTTATTTTAAATGCACCAGAAAACCTGCCATGAATTTCTGGC-------------------------TAAGTGAGACATTATTTTG-TAATTGAGACACTCCTCCTT-ATATGGTCAGGTTTTCTTAAAGTGGGGCACATCTCTGTCAGCCCTGTGATGTGGCTGCTGTGAGTGCTC-ATCCTGTCAGGCTAAGAAA--TGTGTCC i nomLeu3.chr7b M 100 C 0 s rheMac8.chr10 84277974 645 + 92844088 GCTGGTCAATTTCGAAACGCCACTCACTGACCACACCATGGGAAGGGATCCAGCAATAATGTTTTAGGCCAAGCCTCACAAATGTTCTCAAATCAA----------CAACACAGCAGGATGAGATAAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-TCCCAGCCCTGCCTCTGGTGCCCCCGCCATCCACCCACCCAAACAC---TCTGCCAGGCAT------TTCCTTGCTGCAA-TTGTGAACGGTCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGGTAAGAG---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAGAAGCGGAATTTGGTTTCTAGTTCTT---GTATTTGT---AAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATAcaagtatatttccc-ttttcagaaaatatgggctcctgtgtgcaaatggtatttttataca-tgaatcttattttaaatgcaccagaaaacctGCCATGAATTTCTGGC-------------------------TAAGTGAGACATTATTTTG-TAATTGAGACACTCCTCCTT-ATATGGTCAGGTTCTCTTAAAGTGGGGCACATCTCTGTCAGCCCTGTGATGTGGCTGCTGTGAGCGCTC-ATCCTGTCAGGGTAAGAAA--TTTATCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87622982 645 - 96509753 GCTGGTCAATTTCTAAACGCCACTCACTGACCACACCATGGGAAGGGATCCAGCAATAATGTTTTAGGCCAAGCCTCACAAATGTTCTCAAATCAA----------CAACACAGCAGGATGAGATAAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-TCCCAGCCCTGCCTCTGGTGCCCCCGCCATCCACCCACCCAAACAC---TCTGCCAGGCAT------TTCCTTGCTGCAA-TTGTGAACGGTCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGGTAAGAG---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAGAAGCGGAATTTGGTTTCTAGTTCTT---GTATTTGT---AAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATACAAGTATATTTCCC-TTTTCAGAAAATATGGGCTCCTGTGTGCAAATGGTATTTTTATACA-TGAATCTTATTTTAAATGCACCAGAAAACCTGCCATGAATTTCTGGC-------------------------TAAGTGAGACATTATTTTG-TAATTGAGACACTCCTCCTT-ATATGGTCAGGTTCTCTTAAAGTGGGGCACATCTCTGTCAGCCCTGTGATGTGGCTGCTGTGAGCGCTC-ATCCTGTCAGGGTAAGAAA--TTTATCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7114814 645 - 13098629 GCTGGTCAATTTCTAAACGCCACTCACTGACCACACCATGGGAAGGGATCCAGCAATAATGTTTTAGGCCAAGCCTCACAAATGTTCTCAAATCAA----------CAACACAGCAGGATGAGATAAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-TCCCAGCCCTGCCTCTGGTGCCCCCGCCATCCACCCACCCAAACAC---TCTGCCAGGCAT------TTCCTTGCTGCAA-TTGTGAACGGTCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGGTAAGAG---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAGAAGCGGAATTTGGTTTCTAGTTCTT---GTATTTGT---AAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATAcaagtgtatttccc-ttttcagaaaatatgggctcctgtgtgcaaatggtatttttataca-tgaatcttattttaaatgcaccagaaaacctgccatgaatttctggc-------------------------taagtgagacattattttg-taattgagacactcctccTT-ATATGGTCAGGTTCTCTTAAAGTGGGGCACATCTCTGTCAGCCCTGTGATGTGGCTGCTGTGAGCGCTC-ATCCTGTCAGGGTAAGAAA--TTTATCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4081594 645 - 4483953 GCCGGTCAATTTCTAAACGCCACTCACTGACCACACCATGGGAAGGGATCCAGCAATAATGTTTTAGGCCAAGCCTCACAAATGTTCTCAAATCAA----------CAACACAGCAGGATGAGATAAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-TCCCAGCCCTGCCTCTGGTGCCCCCGCCATCCACCCACCCAAACAC---TCTGCCAGGCAT------TTCCTTGCTGCAA-TTGTGAGCGGTCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGGTAAGAG---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAGAAGCGGAATTTGGTTTCTAGTTCTT---GTATTTGT---AAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATAcaagtatatttccc-ttttcagaaaatatgggctcctgtgtgcaaatggtatttttataca-tgaatcttattttaaatgcaccagaaaacctgccatgaatttctggc-------------------------taagtgagacattattttg-taattgagacactcctccTT-ATACGGTCAGGTTCTCTTAAAGTGGGGCACATCTCTGTCAGCCCTGTGATGTGGCTGCTGTGAGCGCTC-ATCCTGTCAGGGTAAGAAA--TGTATCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24711785 648 + 33263144 GCCAGTCAATTTCTAAACGCCACTCACTGACCACACCATGGGAAGGGATCCAGCAATAATGTTTTAGGCCAAGCCTCACAAATGTTCTCAAATCAA----------CAACACAGCAGGATAAGATAAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-TCCCAGCCCTGCCTCTGGTGCCCCCGCCATCCACCCACCCACACAC---TCTGCCAGGCAT------TTCCTTGCTGCTA-TCGTGAGCGGTCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGGTAAGAG---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAGAAGCGGAATTTGGTTTCTAGTTCTT---GTATTTGTAAGAAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATACAAGTATATTTCCC-TTTTCAGAAAATATGGGCTCCTGTGTGCAAATGGTATTTTTATACA-TGAATCTTATTTTAAATGCACCAGAAAACCTGCCATGAATTTCTGGC-------------------------TAAGTGAGACATTATTTTG-TAATTGAGACACTCCTCCTT-ATATGGTCAGGTTCTCTTAAAGTGGGGCACATCTCTGTCAGCCCTGTGATGTGGCTGCTGTGAGTGCTC-ATCCTGTCAGGGTAAGAAA--TGTGTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13992818 645 - 14338769 GCCGGTCAATTTCTAAACGCCACTCACTGACCACACCATGGGAAGGGATCCAGCAATAATGTTTTAGGCCAAGCCTCACAAATGTTCTCAAATCAA----------CAACACAGCAGGATGAGATAAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-TCCCAGCCCTGCCTCTGGTGCCCCCGCCATCCACCCACCCAAACAC---TCTGCCAGGCAT------TTCCTTGCTGCAA-TTGTGAGCGGTCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGGTAAGAG---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAGAAGCGGAATTTGGTTTCTAGTTCTT---GTATTTGT---AAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATAcaagtatatttccc-ttttcagaaaatatgggctcctgtgtgcaaatggtatttttataca-tgaatcttattttaaatgcaccagAAAACCTGCCATGAATTTCTGGC-------------------------TAAGTGAGACATTATTTTG-TAATTGAGACACTCCTCCTT-ATATGGTCAGGTTCTCTTAAAGTGGGGCACATCTCTGTCAGCCCTGTGATGTGGCTGCTGTGAGCGCTC-ATCCTGTCAGGGTAAGAAA--TGTATCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 930328 648 + 1946073 GCTGGTCAATTTCTAAACGCCACTCACTGACCACACCATGGGAACGGATCCAGCAATAATGTTTTAGGCCAAGCCTCACAAATGTTCTCAAATCAA----------CAACACAGCAGGATGAGATAAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-TCCCAGCCCTGCCTCTGGTGCCCCCGCCATCCACCCACCCACACAC---TCTGCCAGGCAT------TTCCTTGCTGCTA-TCGTGAGCGGTCTGTAGATCTTCCCTATTTACTTCTGCTGTGAAAATCTGGGGTAAGAG---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAGAAGCGGAATTTGGTTTCTAGTTCTT---GTATTTGTAAGAAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATAcaagtatatttccc-ttttcagaaaatatgggctcctgtgtgcaaatggtatttttataca-tgaatcttattttaaatgcaccagaaaacctGCCATGAATTTCTGGC-------------------------TAAGTGAGACATTATTTTG-TAATTGAGACACTCCTCCTT-ATATGGTCAGGTTCTCTTAAAGTGGGGCACATCTCTGTCAGCCCTGTGATGTGGCTGCTGTGAGTGCTC-ATCCTGTCAGGGTAAGAAA--TGTGTCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1961109 641 - 2117846 GCTGGTCAATTTCTAAACACTACTCACTGACCACACCATGGGAAGGGATCCAGCAATAATGTTTCAGGCCAAGCCTCACAAATGTTCTCAAATCAA----------CAACACAACAGGGTGGGATAAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-CCCCAGCCCTGCCTCTGGTGCTCCT-CCGTCCACCCACCCACATAC---TCGGCTAGGCAT------TTCCTTGCTGCTA-TCATAAGTGGCCTGCAGATCTTCACTGTTTACTTCTGCTGTGAAAATCTGGGGAAGGAA---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAAAAGTGGAATCTGGTTTCTAGTTCTT---GTA------AGAAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATACAAGTATAATTCCC-TTTTCAGAAAATATGGGCTCCTGTGTGCAAATGGTATTTTTATACA-TGCATCTTATTTTAAATGCACCAGAAAACCTGCCATGAATTTCTGGC-------------------------TAAGTGAGACATTATTTTG-TAATTGAGACACTCCTCCTT-ATATGGTCAGGTTTTCTTAAAGTGGGGCACACCTCTGTCAGCCCTGTGATGTGGCTGTTGTAAGTGCTC-ATCCTGTCAGGGTAAGAAA--TATGTCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8874301 642 - 16357246 GCTGGTCAATTTCTAAACACTACTCACTGACCACATCATGGGAAGGGATCCAGCAATAATGTTTCAGGCCAAGCCTCACAAATGTTCTCAAATCAA----------CAACACAACAGGGTGCAATAAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-CCCCAGCCTTGCCTCTGGTGCTCCC-CCATCCACCCACCCACATAC---TCTGCTAGGCAT------TTCCTTGCTGCTA-TCGTAAGTGGCCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGGAAGGAA---AGGGTAAGATAGTAGAGTT---------ATATATAAACCTTTTAGAATTAAAAGTGGAATCTGGTTTCTAGTTCTT---GTA------AGAAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATACAAGTATAATTCCC-TTTTCAGAAAATATGGGCTCCTGTGTGCAAATGGTATTTTTATATA-TGCATCTTATTTTAAATGCACCAGAAAACCTGCCATGAATTTCTGGC-------------------------TAAGTGAGACATTATTTTGTTAATTGAGACACTCCTCCTT-ATATGGTCAGGTTTTCTTAAAGTGGGTCACATCTCTGTCAGCCCTGTGATGTGGCTGTTGTAAGTGCTC-ATCCTGTCAGGGTAAGAAA--TATGTCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1357462 641 - 1807191 GCTGGTCAATTTCTAAACACTACTCACTGACCACATCATGGGAAGGGATCCAGCAATAATGTTTCAGGCCAAGCCTCACAAATGTTCTCAAATCAA----------CACCACAACAGGGTGGGATAAGCAAT---C--------CATGTCATAAAGGACATGCCA--GA--GTGGGGT-CCCCAGCCTTGCCTCTGGTGCTCCC-CCGTCCACCCACCCACATAC---TCTGCTAGGCAT------TTCCTTGCTGCTA-TCATAAGTGGCCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGGAAGGAA---AGGGTAAGATAGTAGAGTT---------ATATATAAACCTTTTAGAATTAAAAGTGGAATTTGGTTTCTAGTTCTT---GTA------AGAAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATAcaagtataattccc-ttttcagaaaatatgggctcctgtgtgcaaatggtatttttataca-tgtatcttattttaaatgcaccagaaaacctgccatgaatttctggc-------------------------taagtgagacattattttg-taattgagacactcctccTT-ATATGGTCAGGTTTTCTTAAAGTGGGGCACATCTCTGTCAGCCCTGTGATGTGGCTGTTGTAAGTGCTC-ATCCTGTCAGGGTAAGAAA--TATGTCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 37381 618 + 5963231 GCTGGTCAATTTCTAAACACTACTCACTGACCACACCATGGGAAGTGATCCAGCAATAATGTTTCAGGCCAAGCCTCACAAGTGTTCTCAAATCAA----------CAACACAACAGGGTGGGATAAGCAAT---C--------CATGTCATAAAGGACATCCCA--GA--GTGGTAT-CCCCAGCCCTGCCTCTGGTGCTCCC-CGGTCCACCCACCCACATAT---TCTGCTAG-------------------------CGTAAGTGGCCTGCAGATCTTCCCTGTTTACTTCTGCTGTGAAAATCTGGGG-----A---AGGGTAAGGTAGTAGAGTT---------ATATATAAACCTTTTAGAATTAAAAGTGGAATCTGGTTTCTAGTTCTT---GTA------AGAAGATTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATAcaagtataattccc-ttttcagaaaatatgggctcctgtgtgcaaatggtatttttataca-tgcatcttattttaaatgcaccagaaaacctgccatgaatttctggc-------------------------taagtgagacattactttg-taattgagacactcctccTT-ATATGGTCAGGTTTTCTTAAAGTAGGGCACATCTCTGTCTGCCCTGTGATGTGGCTGTTATAAGTGCTC-ATCCTGTCAGGGTAAGAAA--TATGTCC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5724876 660 + 108171978 ACTGGTCAAGTTCTAACTGCCACTCACTGACCACACCATGGGAAGGGATCCAATAAT---ATTTTAGGCCAAGCCTCACACATGTTGTCAAATCAAACA----GAACAACACAGCAGGGTGAGAAAAGCAAT---CCTACAGTGCATGT----GTGAACACGCCA--GAAGGTGGGGC-ATCCAGCCCTGCCTCTGGTGTCCCTACTGTCCACCCACCCACATGC---TCTGCTGGTCAT------TTCCTCACTGCTA-TTGTGAGCTGCCTGCAGATTTTCCCTGTTTACTTAAGCTGAGAAAAACTGGGGTAGGAGAAAAGGGTAAGGTAGTAGAATT---------ATATATAAATCTTTTAGAATTAAAAGTAGAATCTGGTTTCTAGTTCTT---ATGTTTGTAAGAAGAC-TTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATAcaagtatatttccc--tttcagaaaatatgggctcctgtgtgcaaatgttatttttatacc-cgaatcttattttaaatgcactagaagacctgccatgaatttctagc-------------------------taagtgagacatttttctg-taatcgagacactcctcctt-atatagtcaggttttcttaaagtggggcacatctCTGTCATCCCTGTGATGTGGCTGCTGTGAGTGCGC-ATCCTGTCAGTATAAGAAACGTGTGTCT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5089655 661 - 6317780 ACTGGTCATTTTCTAACCACCACTCACTGACCACGCCATGGGAAGGGATCCAACAATGACGTTTTAGGCCAGGCCTCACACATATTGTCAAATCAAACA----G---AACATAGCAGGGTGAGAAAAGCAAT---CCTACAGTGCATGT----GTGAACACGCCA--GAGGGTGAGGC-ATCCAGCCCTGCCTCTGGTGTCCCCACCATCCACCTGCCCACATGC---TCTGCTGGTCAT------TTCCTCACTGCTA-TTGTGAGCTGCCTGCAGATCTTCCCTGTTTACTTACGCTGTGAAAATCTGGGGTAGGAGGAAAGGGTAAGGTAGTAGAATT---------ATATATAAATCTTTTAGAATTAAAAGTGGAATCTGGTTTCTAGTTATT---ATACTTGTAAGAAGACTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATACGAgtatatttccc--tttcagaaaatatgggctcctgtgtgcaaatgttatttttatacc-cgaatcttattttaaatgcactagaagacctGCCATGAATTTCTAGC-------------------------TAAGTGAGACATTTTTCTG-TAATCAAGATGCTCCTCCTT-ATATAGTCAGGTTTTCTTAAAGTGGGGCACATCTCTGTCATCCCTGTGATGTGGTCGCTATGAGTGCGC-ATCCTGTCAGTACAAGAAACATGTGTCT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36301561 684 - 42659167 GCTGGCCAATTTCTAACCACCACTCACAGACCA--CCATGGGAAGGGATCCAGGAATGATGTTTTAGGCCAGGCCTCAAACATATTCTCAAATCAAACA----GAACACCACAGCAGGG-AAGAAAAGCAAT---CCTACAGTGCGTGT----TTGAACACGCCA--GAAGGCGGGGC-CTGCAGCCC-GCCTCTGATGTCCCTGCTGTCCACCCTGCTGCACAC---TCTGTTGGTCAC------TGCCTCACTGCTA-CTGTGAGTTGCCTGCAGACCTTCCCTGTGCACTTCTGCTACAGAAATCTGGGGTAGAAGGAAAGGGCAAGGTAGTAGAATT---------ATATATAAATCTTTTAGAATTAAAAGTGGAATCTGGTTTCTAGTTCTT---GTATTTATAAGAAGGCTTTATTTTTATTTTTGATCTACTTACCCCAAATGCCCAATATGAGTACATTTTTC--TTTCAGAAAAAATGGGCTCCTGTGTGCAAATGATATTTTTATGCA-CAGATCTTATTTTAAATGCACTAGAAAACTTGCCATGAATTTCTGGCTAAAAACCTGCCATGAATTTCTGGGTAAAAGAAACATTTTTCTG-TAATTGAGACACTCCTCCTTAATACAGTCAGGTTTTCTTAAAGTAGGGCACATCTCTATCATCCCTATGATGTGGCTCCTGTGAGTGTAC-ATTCCGACAGCATAAGAAA--TGTGTCC i otoGar3.GL873526 I 122 C 0 s mm10.chr15 82825448 597 + 104043685 GTTGGTAGGTCTCTA----CCACTTGCTGACCACACAAT-GGAAGAGATATAGCACT---GTTCTAGGCTAGGCCTTATGGATGAACTCACATCAAGCA-------GAACACACTAGGGCAAGCCACACTCT---A--------CAGTATGTGGCAGACACACCAGTGA--GTGTGCTACCCCAAACCTGCCT--------------ATTTACCCACTC-CCTGC---TCTACTGA--AA------TTTCTTTCTGCTA-TCATGTGTTGTCTGTAGACCCTGCT--TCTATTTCTGCCACAGAAATCTTGTGTAGGAGG--AGAGTGAAGGTATATATATACACAACACATATAGAAACTTTTTACAATTAAAAGTGGGACTTGGTTTCTAGttttt---atatttat---aagattttatttttaattttGATCTACTTATCCTAAATGCCCAATACAAGTATATTT--C-TTTACAGAAAATATGAGTTCCTGTATGTAAATGCTATTTTTGTACA-TGAATCCTATTTTAAATGTACTAGGAAATCTGCCATGAATTTCTGGC-------------------------TAAGTGAGACACTATTCTC-TGATTGCAGTGTTCCTCCTT-ATATGGT----------------------CATCTCTGTTGTCACCTTGTTGTGGCTATTGAGAGTACTC-ATACTG---------------TCTATAC i mm10.chr15 C 0 C 0 s canFam3.chr10 46096418 601 - 69331447 GCTGGTCAGTTGCTAACCACCACTCGCTGACTGCACCAT-GCAAAGGATCCAGCAGGAACATGTTGGGCCAGGCCTCACAAATGTCCGCAAATAGATC--------AAATAGAACAAGGTGG-------------T--------GGGGT---------------G--GG--GTGGGGC-ACACAGACTTGTCTCTGGTGCTCCTGTTGTCCACCTGCCCACACACATGCTTGCCCGTCCT------TTCCTCATTCTTC-CCGCA-----TCTGAAAA---TGCCTGTTTATTTCTGCTGTGGAAGTCTGGGGTAGGAGAAGAGGGTAAGATAGTAGAGTT---------ATATATAAACCTTTTAGAATTAAAAGTGGAGTTTGGTTTCTAGTTCTT---GTATTTGT---AAGATTTTATTTTTAT------TCTACTTATCCCAAATGCCCAATACAAGTATATTTCTCTTTTTCAAAAAAGATGGGCTCCTGTGTGCAAATGGTATTTTTATACA-CCAATCCTATTTTAAATGCACTAGGAAACCTGCCACAAGTTTCTGGC-------------------------TAAGTGAGACATTATTTTG-TAATGGAGATGCTCCTTCTT-ATATGGGCAGGTTTTCTTAAAGTGGGGCACATCTCTATCATCCCTGTGAT--------------CACTCAATCCTGTTGGCATACAACA--TGTGACC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 73977 660 + 1056298 GCAGGTCAATTTCCAACCACCACTCACTGACCACACCAT-GGAAGGGATCCAACAACAACTTTTTAGGCCAGATCTCATAAATGTTCTTAAATAAATCACATAGACCACCACAGCGGGGAGGGACAAACACTTCCC--------CAGGGTGTGGTGGACATGCAG--GAGGGCAGGGC-ACCCAGCCCTGCCCCTGCCATTCCTGTTGTCCACTCA-CAGCATGC---TTTGCCTATCCTTCCTCATTCCTCACCACTATTCTTGAGCTCCTTGTAGCTCTTGCCAGTTTATTTCTGGTGTGGAAGTCTGGGA-AGGAG---AGGGTAAGATAGTAG--TT---------ATATATAAACCTTTCGGAATTAAAAGTGGAATTTTGTTTCTAGTTCTTCTCATATTTGT---AAGATTTTATTTTTATTTCTGATTTACTTACCCCAAATGCCCAA-----GTATCTTTCCC-TTTTCAGAAAACATGGGTTCTTGTGTGCAAACTGTATTTTTATACACTGAATCCTATTTTAACTTTGCTAGGAAACATGCCATGAATTTCTGGC-------------------------TAAGTGAAAAATTATTCTG-TAATTGAGATACTCCTCCTT-AAACGGTCAGGTTTTCCTAAAGTGGGACACTTCTCTATCATCTACAGCA---GGCTGCTGTGAATGCTT-ATTCTGCTGGCATCAGAAAAACATGTCT i dasNov3.JH570235 C 0 I 680 a score=1164641.000000 s hg38.chr22_GL383582v2_alt 90656 81 + 162811 TATCAGCAACAAACA-CATTCATAAAACTCAACCACATGTGACCCTACTAA----GG-------ATGCTGGCTCTTCAGATAGCAGAGGCACA s panTro5.chr22 28870548 81 + 37823149 TATCAGCAACAAACA-CATTCATAAAACTCAACCACATGTGACCCTACTAA----GG-------ATGCTGGCTCTTCAGGTAGCAGAGGCACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41145142 81 + 50109623 TATCAGCAACAAACA-CATTCATAAAACTCAACCACATGTGACCCTACTAA----GG-------ATGCTGGCTCTTCAGGTAGCAGAGGCACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3167880 81 + 4464012 TATCAGCAACAAACA-TATTCATAAAACTCAACCACATGTGACCCTACTAA----GG-------ATGCTGGCTCTTCAGGTAGCAGAAGCACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106663826 82 - 115148730 TATCAGCAACAGACA-TATTCAGAAAACTCAACCACATGTGACCCTACTAAG---GG-------ATGCTGGCTCTTCAGGTAGCAGAGGCACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84278619 81 + 92844088 CATCAGCAACAAACA-TATTCATAAAACTCAACCACATGTGACCCTACTAA----AG-------ATGCTGGTTCTTCAGGCAGCAGAGGCACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87623627 81 - 96509753 CATCAGCAACAAACA-TATTCATAAAACTCAACCACATGTGACCCTACTAA----AG-------ATGCTGGCTCTTCAGGCAGCAGAGGCACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7115459 81 - 13098629 CATCAGCAACAAACA-TATTCATAAAACTCAACCACATGTGACCCTACTAA----AG-------ATGCTGGCTCTTCAGGCAGCAGAGGCACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4082239 81 - 4483953 CATCAGCAACAAACA-TATTCATAAAACTCAACCACATGTGACCCTACTAA----AG-------ATGCTGGCTCTTCAGGCAGCAGAGGCACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24712433 81 + 33263144 TATCAGCAACAAACA-TATTCATAAAACTCAACCACATGTGACCCTACTAA----AG-------ATGCTGGCTCTTCAGGCAGCAGAGGCACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13993463 81 - 14338769 CATCAGCAACAAACA-TATTCATAAAACTCAACCACATGTGACCCTACTAA----AG-------ATGCTGGCTCTTCAGGCAGCAGAGGCACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 930976 81 + 1946073 TATCAGCAACAAACA-TATTCATAAAACTCAACCACATGTGACCCTACTAA----GG-------ATGCTGGCTCTCCAGGTAGCAGAGGTACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1961750 79 - 2117846 CATCAGCAATAAACA-TATTCATAAAACTCAACCACATGTAACCCTACTAA----AG-------ATGCAGGCTGTTCCGGTAGCAGAGG--CA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8874943 81 - 16357246 TATCAGCAATAAACA-TATTCATAAAACTCAACCACATGTGACCCTACTAA----AG-------ATGCAGGCTGTTCAGGTAGCAGAGGCACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1358103 81 - 1807191 TATCAGCAATAAACA-TATTCATAAAACTCAACCACATGCGACCCTACTAA----AG-------ATGCAGGCTGTTCAGGTAGCAGAGGCGCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 37999 81 + 5963231 TATCAGCAATAAACA-TATTCATAAAACTCAACCACATGTGACCCTACTAA----AG-------ATGCAGGCTGTTCAGGTAGCAGAGGCACA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5725536 85 + 108171978 TATGAACGACAATCA-TATTTGTAAAACACAACCGCATGTGGCCCTACTGAGGAAGG-------ACGCAGACTCTTCAGGTAGTGGAGGCACG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5090316 85 - 6317780 TATCAACGACAATCA-TATCTGTAAAACACAACCACATGTGGCCCTACTGAGGAAGG-------ATGCAGACTCTTCAGGTGGTAGAGGCACA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36302245 64 - 42659167 TGTCA---ACAATCA-TATTCATAAAACACAACTACATGTG-------------------------GCAAATTCTTCAAATGGCTGAGGCACA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82826045 76 + 104043685 TATCA---------A-CATTACCAAAACACAACCACATGAGGCCCTACTAAGGAAGG-------ATGCAGATTATTCAACTTTCCTGGGTGTG i mm10.chr15 C 0 C 0 s canFam3.chr10 46097019 85 - 69331447 TAGCAACAATAATCATTATTTATAAAATTCAACCAAAT-TGGCCCAACTGAGGACGG-------ACGCAGACTCTTCTGGTGGCCAAGGCACA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 75317 87 + 1056298 TGTCAGC-ATGACCA-TATTCACGAAATTTGGCCATACATGGCCCTACTGA----GGGAAAGCTATGCAGACATGCCAGGTGGCCACGGCACA i dasNov3.JH570235 I 680 I 301 a score=1099402.000000 s hg38.chr22_GL383582v2_alt 90737 77 + 162811 --------CAACCAG-CAAGACTAGCT-GGAAGAGACAGAAACTTGTTCCTGCTTCTATGAAAA----ATAAAA-----GTGTTCCCTAAGCAATT- s panTro5.chr22 28870629 77 + 37823149 --------CAACCAG-CAAGACTAGCT-GGAAGAGACAGAAACTTGTTCCTGCTTCTATGAAAA----ATAAAA-----GTGTTCCCTAAGCAATT- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41145223 77 + 50109623 --------CAACCAG-CAAGACTAGCT-GGAAGAGACAGAAACTTGTTCCTGCTTCTATGAAAA----ATAAAA-----GTGTTCCCTAAGCAATT- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3167961 77 + 4464012 --------CAACCAG-CAAGACTAGCT-GGAAGAGACAGAAACTTGTTCCTGCTTCTATGAAAA----ATAAAA-----GTGTTCCCTAAGCAATT- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106663908 77 - 115148730 --------CAACCAG-CAAGACTAGCT-GGAAGAGACAGAAACTTGTTCCTGCTTCTATGAGAA----ATAAAA-----GTGTTCCCTAAGCAATT- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84278700 77 + 92844088 --------CAACCAG-CAAGACTAGCT-GGAAGAGACAGAAACTTGTTCCTGCTTCTATGAAAA----ATAAAA-----ATGTTCCCTAAGCAATT- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87623708 77 - 96509753 --------CAACCAG-CAAGACTAGCT-GGAAGAGACAGAAACTTGTTCCTGCTTCTATGAAAA----ATAAAA-----ATGTTCCCTAAGCAATT- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7115540 77 - 13098629 --------CAACCAG-CAAGACTAGCT-GGAAGAGACAGAAACTTGTTCCTGCTTCTATGAAAA----ATAAAA-----GTGTTCCCTAAGCAATT- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4082320 77 - 4483953 --------CAACCAG-CAAGACTAGCT-GGAAGAGACAGAAACTTGTTCCTGCTTCTATGAAAA----ATAAAA-----GTGTTCCCTAAGCAATT- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24712514 77 + 33263144 --------CAACCAG-CAAGACTAGCT-GGAAGAGACAGAAACTTGTTCCTGCTTCTATGAAAA----ATAAAA-----GTGTTCCCTAAGCAATT- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13993544 77 - 14338769 --------CAACCAG-CAAGACTAGCT-GGAAGAGACAGAAACTTGTTCCTGCTTCTATGAAAA----ATAAAA-----GTGTTCCCTAAGCAATT- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 931057 77 + 1946073 --------CAACCAG-CAAGACTAGCT-GGAAGAGACAGAAACTTGTTCCTGCTTCTATGAAAA----ATACAA-----GTGTTCCCTAAGCAATT- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1961829 77 - 2117846 --------CAACCAG-TAAGGCTAGCT-GGAAGAGACAGAAACTTGTTCCTGCTTCTATGAAAA----ATAAGA-----GTGTTCCCTAAGCAATT- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8875024 77 - 16357246 --------CAACCAG-TAAGGCTAGTT-GGAAGAAACAGAAACTTGTTCCTGCTTCTATGAAAA----ATAAGA-----GTGTTCCCTAAGCAATT- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1358184 77 - 1807191 --------TAACCAG-TAAGGCTAGCT-GGAAGAGACAGAAGCTTGTTCCTGCCTCTATGAAAA----ATAAGA-----GCGTTCCCTAAGCAATT- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 38080 77 + 5963231 --------CAACCAG-TAAGGCTAGCT-GGAAGAGACACAAACTTGTTCCTGCTTCTATGAAAA----ATAAGA-----GTGTTCCCTAAGCAATT- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5725621 76 + 108171978 --------C--CCAGATAAGACTAACA-GGAAGATACAGACACTTGTTTCTGTGCCTATGAAAA----ATAAAA-----GTGCTCCCTAGGCAGTT- i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5090401 76 - 6317780 --------C--CCAGATAAGACTAACC-GGAAGATACAGACACTTGTTTTGGCGCCTATGAAAA----ATAAAA-----GTGCTCCCTAAGCAATT- i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36302309 64 - 42659167 --------C--CCAGATAAGACTAACCTGGAAGATA-AGACACTTGTTTCTGTCCCTACGAAAA----ATGAA-----------------GTGGTC- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82826121 91 + 104043685 GTCATGACCCACCAG-GAAGGCTAACC-AGAAGACACAGGTATTTGTTCCTGCTTCTATGAAAA----ATAAAATATGTGTGGTTCTTAAACCCTTA i mm10.chr15 C 0 C 0 s canFam3.chr10 46097104 82 - 69331447 --------CACCCAGATGAGGCTACCT-GAATGATACAGATGCTTGTTCTTGATTCTAGGAAAATAACATGAAC-----CCACTCCCATAGCAGTT- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 75404 301 + 1056298 I a score=68814.000000 s hg38.chr22_GL383582v2_alt 90814 4 + 162811 ACAC s panTro5.chr22 28870706 4 + 37823149 ACAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41145300 4 + 50109623 ACAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3168038 4 + 4464012 ACAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106663985 4 - 115148730 ACAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84278777 4 + 92844088 ACAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87623785 4 - 96509753 ACAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7115617 4 - 13098629 ACAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4082397 4 - 4483953 ACAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24712591 4 + 33263144 ACAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13993621 4 - 14338769 ACAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 931134 4 + 1946073 ACAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1961906 4 - 2117846 ACAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8875101 4 - 16357246 ACAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1358261 4 - 1807191 ACAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 38157 4 + 5963231 ACAC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5725697 4 + 108171978 ACAC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5090477 4 - 6317780 ACAC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36302373 4 - 42659167 ACAT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82826212 4 + 104043685 ATTC i mm10.chr15 C 0 C 0 s canFam3.chr10 46097186 4 - 69331447 GTAC i canFam3.chr10 C 0 I 167 s dasNov3.JH570235 75705 4 + 1056298 ACAC i dasNov3.JH570235 I 301 C 0 a score=941882.000000 s hg38.chr22_GL383582v2_alt 90818 76 + 162811 T-GAGCTGGCTCAGGC--------------------------------CCCC--GACACA-------------------------------------------GATACTGATG-G-AAAACTACACTAACGCCAGCAACA-------------------------GCAAAGCCCAAGCGCT s panTro5.chr22 28870710 76 + 37823149 T-GAGCTGGCTCAGGC--------------------------------CCCC--GACACA-------------------------------------------GATACTGATG-G-AAAACTACACTAACGCCAGCAACA-------------------------GCAAAGCCCAAGTGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41145304 76 + 50109623 T-GAGCTGGCTCAGGC--------------------------------CCCC--GACACA-------------------------------------------GATACTGATG-G-AAAACTACACTAACGCCAGCAACA-------------------------GCAAAGCCCAAGTGCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3168042 76 + 4464012 T-GAGCTGGCTCAGGC--------------------------------CCCC--GACACA-------------------------------------------GATACTGATG-G-AAAACTATATTAACGCCAGCAACA-------------------------GCAAAGCCCAAGCGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106663989 76 - 115148730 T-GAGCTGGCTCAGGC--------------------------------CCCC--GACACA-------------------------------------------GATACAGATG-G-GAAACTACACTAACGCCAGCCACA-------------------------GCAAAGCCCAAGCGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84278781 76 + 92844088 T-GAGCTGGCTCAGGT--------------------------------CCCC--GACACA-------------------------------------------AATACTGATG-G-GAAACGAAACTAACGCCAGCAACA-------------------------GCAAAGCCCAAGTGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87623789 76 - 96509753 T-GAGCTGGCTCAGGT--------------------------------CCCC--GACACA-------------------------------------------AATACTGATG-G-GAAACGAAACTAACGCCAGCAACA-------------------------GCAAAGCCCAAGTGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7115621 76 - 13098629 T-GAGCTGGCTCAGGT--------------------------------CCCT--GACACA-------------------------------------------AATACTGATG-G-GAAACGAAACTAACGCCAGCAACA-------------------------GCAAAGCCCAAGTGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4082401 76 - 4483953 T-GAGCTGGCTCAGGC--------------------------------CCCC--GACACA-------------------------------------------AATACTGATG-G-GAAACGAAACTAACGCCAGCAACA-------------------------GCAAAGCCCAAGTGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24712595 76 + 33263144 T-GAGCTGGCTCAGGC--------------------------------CCCC--GACACA-------------------------------------------AATACTGATG-G-GAAACTACACTAACGCCAGCAACA-------------------------GCAAAGCCCAAGTACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13993625 76 - 14338769 T-GAGCTAGCTCAGGC--------------------------------CCCC--AACACA-------------------------------------------AATACTGATG-G-GAAACGAAACTAACGCCAGCAACA-------------------------GCAAAGCCCAAGTGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 931138 76 + 1946073 T-GAGCTGGCTCAGGC--------------------------------CCCC--GACACA-------------------------------------------AATACTGATG-G-GAAACTACACTAACGCCAGCAACA-------------------------GCAAAGCCCAAGTGCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1961910 75 - 2117846 T-GAGCTGGCTCAGGC--------------------------------CCCC--AACACA--------------------------------------------ATATTGATG-G-AAAACTATGCTAACGTCAGCAACA-------------------------GCAAAGCCCAAGCACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8875105 75 - 16357246 T-GAGCTGGCTCAGGC--------------------------------CCCC--GACACA--------------------------------------------ACACTGATG-G-GAAACTATGCTAATGCCAGCAACA-------------------------GCAAAGCCCAATCACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1358265 75 - 1807191 T-GAGCTGGCTCAGGC--------------------------------CCCC--GACACA--------------------------------------------ATACTGATG-G-GAAACTATGCTAACGCCAGCAACA-------------------------GCAAAGCCCAAGCACT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 38161 75 + 5963231 T-GAGCTGGCTCAGGC--------------------------------CCCC--GACACA--------------------------------------------ATACTGATG-A-GAAACTATGCTAACGCCAGCAACA-------------------------GCAAAGCCCAAGCACT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5725701 79 + 108171978 TTGAACTGGCTCAAGC--------------------------------CCCCCTAACGCC-------------------------------------------GATGCAGATG-G-AAAACCACACTAATGCCAGCAACA-------------------------CTGAAGCCCAagtgct i micMur3.chr7 C 0 I 205 s proCoq1.NW_012136747v1 5090481 79 - 6317780 TCGAGCTGGCTCAAGC--------------------------------CCCCATAAGGCC-------------------------------------------AATGCAGATG-G-AAAACTACACTAACGCCAGCAACA-------------------------CTGAAGCCCAAGTGCT i proCoq1.NW_012136747v1 C 0 I 195 s otoGar3.GL873526 36302377 103 - 42659167 TCAAGCTGGCTCAAAG--------------------------------CCCCC-AATGCT-------------------------------------------GATGCTGATG-G-TAAACTATGCTAATGCTAGCAACAgatggtaaacttgatggtaaacttgCTAATGCCCAAGAGCT i otoGar3.GL873526 C 0 I 1 s mm10.chr15 82826216 49 + 104043685 T-GAGCTGGCTAAGCT--------------------------------CCCA--G------------------------------------------------------------------------AACACTGGCAACT-------------------------GTGGAGCCTAAATGTT i mm10.chr15 C 0 C 0 s canFam3.chr10 46097357 152 - 69331447 T-GAGCTTCGTGAAGCTCACCTGGATGGTGCCAAGGAATGGAAGGACACCCC--AACACATACCAGCAGGCACAGGACGACAGGGACCTGGATCAAGCTTACTAATGCTGATGTT-AAAACCACACTAGTGCCAGCAACA-------------------------GCACAGCCTGGGAGCT i canFam3.chr10 I 167 I 3 s dasNov3.JH570235 75709 69 + 1056298 -CAAGCT--------C--------------------------------CCCC--AACCCT-------------------------------------------GCTGCTGACA-GCGGAACTCCTCTAACAACAGTACCC-------------------------ACGGATCCCACgtgct i dasNov3.JH570235 C 0 C 0 a score=2032566.000000 s hg38.chr22_GL383582v2_alt 90894 195 + 162811 CGCCACGC-TCAGAC--------------------TG--AATG------------------ATCTCATCCAGCCCT--------CTGCACTATTCCACCTGGCAGGCACTCCTAATGCTTCACGTGAAACTCTTGAGACACCAAAGGGAAAATAACTTGTTCCA-GGTCAGAGCTGAGATTCTGGATGATCATCTCTGGCATCCTCCAGAGACAAAAGAGGTAGGAACAAGGGCTGGA-AGAGATT s panTro5.chr22 28870786 195 + 37823149 CGCCACGC-TCAGAC--------------------TG--AATG------------------ATCTCATTCAGCCCT--------CTGCACTATTCCACCTGGCAGGCACTCCTAATGCTTCACGTGAAACTCTTGAGACACCAAAGGGAAAATAACTTGTTCCA-GGTCAGAGCTGAGATTCTGGATGATCATCTCTGGCATCCTCCAGAGACAAAAGAGGTAGGAACAAGGGCTGGA-AGAGATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41145380 195 + 50109623 CGCCACGC-TCAGAC--------------------TG--AATG------------------ATCTCATTCAGCCCT--------CTGCACTATTCCACCTGGCAGGCACTCCTAATGCTTCACGTGAAACTCTTGAGACACCAAAGGGAAAATAACTTGTTCCA-GGTCAGAGCTGAGATTCTGGATGATCATCTCTGGCATCCTCCAGAGACAAAAGAGGTAGGAACAAGGGCTGGA-AGAGATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3168118 195 + 4464012 CGCCACGC-TCAGAC--------------------TG--AATG------------------ATCTCATCCAGCCCT--------CTGCACTATTCCACCTGGCAGGCACTCCTAATGCTTCACGTGAAACTCTTGAGACACCAAAGGGAAAATAACTTGTTCCA-GGTCAGAGCTGAGATTCTGGATGATCATCTCTGGCATCCTCCAGAGACAAAAGAGGTAGGAACAAGGGCTGGA-AGAGATT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106664065 195 - 115148730 CGCCACGC-TCAGAT--------------------TG--AATG------------------ATCTCATCCAGCCCT--------CTGCACTATTCCACCTGGCAGGCGCTCCTAACGCTTCCCGTGAAACTCTTGAGACACCAGAGGGAAAATAACTTGTTCCA-GGTCAGAGCTGAGATTCTGGATGATCATCTCTGGCATCCTCCAGAGACAAAAGAGGTAGGAACAAGGGCTGGA-AGAGATT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84278857 195 + 92844088 CCCCATGC-TCAGAT--------------------TG--AATG------------------ATCTCATCCAGCCCT--------CTGCACTACTCCACCTGGCAGGCACTCCTAATGCTTTACATGAAACTCTTGAGACACCAGAGGCAAAATAACTTGTTCCA-GGTCAGAGCTGAGATTCTGGATGACCATCTCTGGCATCCTCAAGAGACAAAAGAGATAGGAAAAAGGGCTGGA-AGAGATT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87623865 195 - 96509753 CCCCATGC-TCAGAT--------------------TG--AATG------------------ATCTCATCCAGCCCT--------CTGCACTACTCCACCTGGCAGGCACTCCTAATGCTTTACATGAAACTCTTGAGACACCAGAGGCAAAATAACTTGTTCCA-GGTCAGAGCTGAGATTCTGGATGACCATCTCTGGCATCCTCAAGAGACAAAAGAGATAGGAAAAAGGGCTGGA-AGAGATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7115697 195 - 13098629 CCCCATGC-TCAGAT--------------------TG--AATG------------------ATCTCATCCAGCCCT--------CTGCACTACTCCACCTGGCAGGCACTCCTAATGCTTTACATGAAACTCTTGAGACACCAGAGGCAAAATAACTTGTTCCA-GGTCAGAGCTGAGATTCTGGATGACCATCTCTGGCATCCTCAAGAGACAAAAGAGATAGGAAAAAGGGCTGGA-AGAGATT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4082477 195 - 4483953 CCCCATGC-TCAGAT--------------------TG--AATG------------------ATCTCATCCAGCCCT--------CTGCACTACTCCACCTGGCAGGCACTCCTAATGCTTTACATGAAACTCTTGAGACACCAGAGGCAAAATAACTTGTTCCA-GGTCAGAGCTGAGATTCTGGATGACCATCTCTGGCATCCTCAAGAGACAAAAGAGATAGGAAAAAGGGCTGGA-AGAGATT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24712671 195 + 33263144 CCCCATGC-TCAGAT--------------------TG--AATG------------------ATCTCATCCAGCCCT--------CTGCACTACTCCACCTGGCAGGCGCTCCTAATGCTTTACATGAAACTCTTGAGACACCAGAGGCAAAATAACTTGTTCCA-GGTCAGAGCTGAGATTCTGGATGACCATCTCTGGCATCCTCAAGAGACAAAAGAGATAGGAAAAAGGGCTGGA-AGATATT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13993701 195 - 14338769 CCCCATGC-TCAGAT--------------------TG--AATG------------------CTCTCATCCAGCCCT--------CTGCACTACTCCACCTGGCAGGCACTCCTAATGCTTTACATGAAACTCTTGAGACACCAGAGGCAAAATAACTTGTTCCA-GGTCAGAGCTGAGATTCTGGATGACCATCTCTGGCATCCTCAAGAGACAAAAGAGATAGAAAAAAGGGCTGGA-AGAGATT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 931214 195 + 1946073 CCACATGC-TCAGAT--------------------TG--AATG------------------ATCTCATCCAGCCCT--------CTGCACTACTCCACCTGGCAGGCGCTCCTAATGCTTTACATGAAACTCTTGAGACAGCAGAGGCAAAATAACTTGTTCCA-GGTCAGAGCTGAGATTCTGGATGACCATCTCTGGCATCCTCAAGAGACAAAAGAGATAGGAAAAAGGGCTGGA-AGAGATT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1961985 195 - 2117846 CCCCATGC-TCAGAC--------------------TG--AATG------------------ATCTCATCTAGCTCT--------CTGCACTATTCCACCTGGCAAGTGCTCCTAACGCTTCACACAACACTCTTGAGACACCAGAGGGAAAATAACTTGTTTCA-GGTCAGAGCTGAGATTCTGGATGACCATCCCTGGCATCCTCCAGAGACAAAAGACGTAGGGATAAGGGCTGGA-AGAGATT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8875180 196 - 16357246 CCCCATGC-TCAGAC--------------------TG--AATG------------------ATCTCATCTAGCTCT--------CTGCACTATTCCACCTGGCAAGCGCTCCTAACACTTCACACCAAACTCTTGAGACACCAGAGGGAAAATAACTTGCTTCAGGGTCAGAGCTGAGATTCTGGATGACCATCCCTGGCATCCTCCAGAGACAAAACAGGTAAGGACAAGGACTGGA-AGAGATT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1358340 195 - 1807191 CCCCATGC-TCAGAC--------------------TG--AATG------------------ATCTCATCTAGCTCT--------CTGCACTATTCCACCTGGCAAGCGCTCCTAACACTTTACACAAAACTCTTGAGACACCAGAGGGAAAATAACTTGTTTCA-GGTCAGAGCTGAGATTCTGGATGACCATCCCTGGCATCCTCCAGAGACAAAAGACATAGGGACAAGGGCTGGA-AGAGATT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 38236 195 + 5963231 CCCCATGC-TCAGAC--------------------TG--AATG------------------ATCTCATCTAGCTCT--------CTGCACTATTCCACCTGGAAAGCGCTCCTAACACTTCACACAAAACTCTTGAGACACCAGAGGGAAAATAACTTGTTTCA-GGTCAGAGCTGAGATTCTGGATGACCATCCCTGGCATCCTCCAGAGACAAAAGAGGTAGGGACAAGGGCTGGA-AAAGATT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36302481 165 - 42659167 CCCAGGAG-TTAGGG--------------------TG--GCTGTAGCAATTGATGAGGATTAACTCAGTCAGTCCT--------CAGGACTAGCCCTCCTGGCAGA---------------------------TGAGATGAC----------TAATTTGTTCCA-GGTCAGAGCT-AGATTCAGGCTGACCA-CCCTGCTATACTGCACAGATAAATGGGGCAGGA--AAGGGCGGCA-------- i otoGar3.GL873526 I 1 C 0 s mm10.chr15 82826265 139 + 104043685 CACCATGA-TGAAAT--------------------AGCTAAGA------------------ATATGGATTAA-------------TGCATT----CACCTGATAAGACCTGCACATG-TCCACTGTAAATAGGTAAAGTATCAGAGGGGCAGGACCTAGCATTA-GGTCACAGGTAA-------------------TAATGTCTCTTGGAGAAAAA------------------------------ i mm10.chr15 C 0 C 0 s canFam3.chr10 46097512 192 - 69331447 CACCATGC-----AG--------------------TG--GGGG------------------GCGCAGTATGCCACTGACACAAACCCCatcattcagtcctacaac--ctgcccactctacacatgaggtgcctgaggcaccagaggggaagta-cttgttcca-ggtcaGAGCTGA--TCCAAACAGACCACCCCTGGCATCTTCCAAAGATGAATGGGGCAGGGG-AAGGGCTGTAGAGCCA-- i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 75778 193 + 1056298 tgccacacatcaggctccattaaaagctagtgacatg--aatg------------------aactcattctttcct--------c-atacccaccctctaggcaagtgttc---------------agagcctccctactctatagctgggat-----gcccaa-ggtcagagCTGAGATCCAGGCTGACCCACCTTGATCAATTCCAGAAACAATTGGGGCAGGACAGGGCACTATA-AGACA-- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5090560 195 - 6317780 I e micMur3.chr7 5725780 205 + 108171978 I a score=258751.000000 s hg38.chr22_GL383582v2_alt 91089 17 + 162811 AGTCCTTCAAAAGCTTT s panTro5.chr22 28870981 17 + 37823149 AGTCCTTCAAAAGCTTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41145575 17 + 50109623 AGTCCTTCAAAAGCTTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3168313 17 + 4464012 AGTCCTTCAAAAGCTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106664260 17 - 115148730 AGTCCTTCAAAAGCTTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84279052 17 + 92844088 AGTCCTTCAAAAGCTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87624060 17 - 96509753 AGTCCTTCAAAAGCTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7115892 17 - 13098629 AGTCCTTCAAAAGCTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4082672 17 - 4483953 AGTCCTTCAAAAGCTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24712866 17 + 33263144 AGTCCTTCAAAAGCTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13993896 17 - 14338769 AGTCCTTCAAAAGCTTT i manLeu1.NW_012102031v1 C 0 T 5962 s colAng1.NW_012115588v1 931409 17 + 1946073 AGTCCTTCAAAAGCTTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1962180 17 - 2117846 AGTCTTTTAAAAGCTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8875376 17 - 16357246 AGTCTTTTAAAAGCTTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1358535 17 - 1807191 AGTCTTTTAAAAGCTTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 38431 17 + 5963231 AGTCTTTTAAAAGCTTT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5725985 17 + 108171978 AGTCCTTCAAGGGCTTT i micMur3.chr7 I 205 C 0 s proCoq1.NW_012136747v1 5090755 17 - 6317780 AGTCCTTCAAGAGCTTT i proCoq1.NW_012136747v1 I 195 C 0 s otoGar3.GL873526 36302646 17 - 42659167 AGTCATTTAAGAGCTCT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82826404 1 + 104043685 --------------T-- i mm10.chr15 C 0 C 0 s canFam3.chr10 46097704 17 - 69331447 TGTCCTTCAAGAGCTCT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 75971 17 + 1056298 AGTCCTTCAAGAGCGTC i dasNov3.JH570235 C 0 C 0 a score=428304.000000 s hg38.chr22_GL383582v2_alt 91106 35 + 162811 GCCCTGCTCTCAGAAGATCAAGGTCCTTCTGGGTG s panTro5.chr22 28870998 35 + 37823149 GCCCTGCTCTCAGAAGACCAAGGTCCTTCTGGGTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41145592 35 + 50109623 GCCCTGCTCTCAGAAGACCAAGGTCCTTCTGGGTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3168330 35 + 4464012 GCCCTGCTCTCAGAAGACCAAGGTCCTTCTGGGTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106664277 35 - 115148730 GCCCTGCTCTCAGAAGACCAAGGTCCTTCTGGGTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84279069 35 + 92844088 GCCCTGCTCTCAGAAGACCAAGGTCCTTCTGGGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87624077 35 - 96509753 GCCCTGCTCTCAGAAGACCAAGGTCCTTCTGGGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7115909 35 - 13098629 GCCCTGCTCTCAGAAGACCAAGGTCCTTCTGGGTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4082689 35 - 4483953 GCCCTGCTCTCAGAAGACCAAGGTCCTTCTGGGTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24712883 35 + 33263144 GCCCTGCTCTCAGAAGACCAAGGTCCTTCTGGGTG i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 931426 35 + 1946073 GCCCTGCTCTCAGAAGACCAAGGTCCTTCTGGGTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1962197 35 - 2117846 GCCCTGCTCTCAGAAGACCAAGGTATTTCTTGGTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8875393 17 - 16357246 GCC------------------GGTATTTCTTGGTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1358552 35 - 1807191 GCCCTGCTCTCAGCAGATGAAGGTATTTCTTGGTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 38448 35 + 5963231 GCCCTGCTCTCAGAAAACCAAGGTATTTCTTGGTG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5726002 35 + 108171978 GCCCTCCTCTCAGAACACCAAGATCCTTCTGGGTG i micMur3.chr7 C 0 I 1192 s proCoq1.NW_012136747v1 5090772 35 - 6317780 GCCCCCCTCGCAGAACACCAAGACCCTTCTGGGTG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36302663 28 - 42659167 CCCCTCCTCTCAGAAGACCAAGA-------GGGTG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82826405 34 + 104043685 ACCTCCCTCTCAGAAGACCAAGAACCTTGTGGGG- i mm10.chr15 C 0 C 0 s canFam3.chr10 46097721 32 - 69331447 GCCTTCCTCTCAGAAGACCAGCAACCT---GGGTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 75988 32 + 1056298 CTTTTTATCTCAGAAGACAAAG---CTCTTGGATA i dasNov3.JH570235 C 0 C 0 e manLeu1.NW_012102031v1 13993913 5962 - 14338769 T a score=721853.000000 s hg38.chr22_GL383582v2_alt 91141 85 + 162811 CCCATAATCAGTAAATGTTTATCATGTGCCCTCGCACCCTTGTTAAGAGAGAAAAGATCATTTGGTCTGGAGTAAACC--AAGGACA s panTro5.chr22 28871033 85 + 37823149 CCCATAATCAGTAAATGTTTATCATGTGCCCTCGCACCCTTGTTAAGAGAGAAAAGATCATTTGGTCTGGAGTAAACC--AAGGACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41145627 85 + 50109623 CCCATAATCAGTAAATGTTTATCATGTGCCCTCGCACCCTTGTTAAGAGAGAAAAGATCATTTGGTCTGGAGTAAAGC--AAGGACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3168365 85 + 4464012 CCCATAATCAGTAAATGTTTATCATGTGCCCTCGCACCCTTGTTAAGAGAGAAAAGATCATTTGGTCTGGAGTAAACC--AAGGACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106664312 85 - 115148730 CCCATAATCAGTAAATGTTTATCATGTGCCCTCCCACCCTTGTTAAGAGAGAAAAGATCATTTGGTCTGGAGTAAACC--AAGGACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84279104 85 + 92844088 CCGATAATCAGTAAATGTTTCTCATGTGCCCTCGCACCCTTGTTAAGAGAGAAAAGATCATTTGGTCCGGAGTAAACC--AAGGACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87624112 85 - 96509753 CCGATAATCAGTAAATGTTTCTCATGTGCCCTCGCACCCTTGTTAAGAGAGAAAAGATCATTTGGTCCGGAGTAAACC--AAGGACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7115944 85 - 13098629 CCGATAATCAGTAAATGTTTCTCATGTGCCCTCACACCCTTGTTAAGAGAGAAAAGATCATTTGGTCCGGAGTAAACC--AAGGACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4082724 85 - 4483953 CCGATAATCAGTAAATGTTTCTCAGGTGCCCTCGCACCCTTGTTAAGAGAGAAAAGATCATTTGGTCTGGAGTAAACC--AAGGACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24712918 85 + 33263144 CCGATAATCAGTAAAAGTTTGTCATGTGCCCTCGCACCCTTGTTGAGAGAGAAAAGATCATTTGGTCTGGAGTAAACC--AAGGACA i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 931461 83 + 1946073 CCGATAATCAGTAAATGTTTGTCATGTGCCCTCGCACCCTTGTTA--AGAGAAAAGATCATTTGGTCCGGAGTAAACC--AAGGACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1962232 53 - 2117846 CTGATAATCAGTACATGTTTATT--------------------------------TACCATGTGGCCTAGAATAAACC--AAGGACA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8875410 51 - 16357246 CCGATAATCAG--CACGTTTATT--------------------------------TACCATGTGGCCTAAAGTAAACC--AAGGACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1358587 53 - 1807191 CTGATAATCAGTACATGTTTATT--------------------------------TACCATGTGGCCTAGAGTAAACC--AAGGACA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 38483 53 + 5963231 CCGATAATCAGTACATGTTTATT--------------------------------TACCATGTGGCCTAGAGTAAACC--AAGGACA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5090807 83 - 6317780 CCGATAATCAGTAAACGTTTACCATGTGTCCTCATATCCTTGTTAAGAAAGGAGAGATCACTTTGCTTAGAGT-GAAC--AAGGAC- i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36302691 83 - 42659167 CCCATAATCAGCAGACATTTACCAGGTGTCATTATATCCTTGTTAAGAAAGGAAAGACAACTTGTCTTAGTA--AAGC--AGGGACA i otoGar3.GL873526 C 0 I 366 s mm10.chr15 82826439 75 + 104043685 TAAATAATCAGTAAATGTTTA---------CTTGCACCTATGAGAAGAAAGCAAAGATCATTTAGCCTGGAGTAAACC--AAAGGC- i mm10.chr15 C 0 C 0 s canFam3.chr10 46097753 85 - 69331447 CTGATAATTAGTACATGTTTACTATGTGCCTTCACATC-TTGGCAAGAAACAACAGATTACTTTGCTTAGAGTAAACCCTAAGGAC- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 76020 73 + 1056298 -TGAGGATCTGTAAATGTGTA---------ATCACACCCGTACCAAGTTATAAAGCAT-GCCTGGCCTGGAGTAAACC--AAGGAC- i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5726037 1192 + 108171978 I e manLeu1.NW_012102031v1 13993913 5962 - 14338769 T a score=642219.000000 s hg38.chr22_GL383582v2_alt 91226 59 + 162811 AGTTCACAGCATTTCTAGTAGCCCT-AGACTCTGTCGACCTTTGTCAGTGCCACAGA-GCA s panTro5.chr22 28871118 59 + 37823149 AGTTCACAGCATTTCTAGTAGCCCT-AGACTCTGTCGACCTTTGTCAGTGCCACAGA-GCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41145712 59 + 50109623 AGTTCACAGCATTTCTAGTAGCCCT-AGACTCTGTCGACCTTTGTCAGTGCCACAGA-GCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3168450 59 + 4464012 AGTTCACAGCATTTCTAGTAGCCCT-AGACTCTGTCGACCTTTGTCAGTGCCACAGA-GCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106664397 59 - 115148730 AGTTCACAGCATTTCTAGTAGCCCT-AGACTTTGTCGACCTTTGTCAGTGCCACAGA-GCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84279189 58 + 92844088 AGTTAACAGCATTTCTGGTAGCCCT-AGACTCTGTCTA-CTTTGTCAGTGCCACAGA-GCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87624197 59 - 96509753 AGTTAACAGCATTTCTGGTAGCCCT-AGACTCTGTCTACCTTTGTCAGTGCCACAGA-GCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7116029 59 - 13098629 AGTTAACAGCATTTCTGGTAGCCCT-AGACTCTGTCTACCTTTGTCAGTGCCACAGA-GCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4082809 59 - 4483953 AGTTCACAGCATTTCTGGTAGCCCT-AGACTCTATCTACCTTTGTCAGTGCCACAGA-GCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24713003 59 + 33263144 AGTTCACAGCATTTCTGGTAGCCCT-AGACTCTGTCTACCTTTGTCAGTGCCACAGA-GCA i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 931544 59 + 1946073 AGTTCACAGCATTTCTGGTAGCCCT-AGACTCTGTCTACCTTTGTCAGTGCCACAGA-GCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1962285 57 - 2117846 AATTCACAGCATTTCCGGTAGTCCT-AGTC--TATCTACTTTTGTCAGTGCCAGAGA-GCG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8875461 57 - 16357246 AATTCACAGCATTTCTGGTAGTCCT-AGAC--TGTCTATTTTTGTCAGTGCCACAGA-GCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1358640 57 - 1807191 AATTCACAGCATTTCTGGTAGTCCT-AGAC--TGTCTACTTTTGTCAGTGCCACAGA-ACG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 38536 57 + 5963231 AATTCACAGCATTTCTGGTAGTCCT-AGAC--TGTCTACTTTTGTCAGTGCCACAGA-GCG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5090890 59 - 6317780 AGTTAACAGCATTTCTGGTAGCCCT-AGACTTTATCTACTTTTATTAGTGCCCCAGA-GCA i proCoq1.NW_012136747v1 C 0 I 2420 s mm10.chr15 82826514 47 + 104043685 AGTTAAGAACACTTGTGGAATCTCC-AGGT--TTTCTACATCTA----TACCTC------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46097838 59 - 69331447 AGTTGGCAGCATTCTGAGTAGCCCC-AGACTGTACCTACCTTTGTCAGTGCCACAGA-GCA i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 76093 61 + 1056298 AGTCAGCAACATTTGTAGTACCCCTAAGGCTTCACCTGGTTTCATCAGTGCCACAGAGGCA i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36302774 366 - 42659167 I e micMur3.chr7 5726037 1192 + 108171978 I e manLeu1.NW_012102031v1 13993913 5962 - 14338769 T a score=605785.000000 s hg38.chr22_GL383582v2_alt 91285 73 + 162811 TCTCAGAAT-CAAAAGG----ACTATCAACTTCAGAGAAGGGAGTGTGGGTAGTCCATCGGTGGCCAACCTGCAGCCA s panTro5.chr22 28871177 73 + 37823149 TCTCGGAAT-CAAAAGG----ACTACCAACTTCAGAGAAGGGAGTGTGGGTAGTCCATCGGTGGCCAACCTGCAGCCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41145771 73 + 50109623 TCTCGGAAT-CAAAAGG----ACTACCAACTTCAGAGAAGGGAGTGTGGGTAGTCCATCGGTGGCCAACCTGCAGCCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3168509 73 + 4464012 TCTCAGAAT-CAAAAGG----ACTATCAGCTTCAGAGAAGGGAGTGTGGGTAGTCCATTGGTGGCCAACCTGCAGCCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106664456 77 - 115148730 TCTCAGAAT-CAAAAGGACTCACTATCAACTTCAGAGAAGGGAGTGTGGGTAGCCCATCGGTGGCCAACCTGCAGCCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84279247 77 + 92844088 TCTCAGAAT-CAAAAGGACTCACTATCAACTTGAGGGAAGGAAGTGTGGGTAGTCCATCAGTGGCCAACCTGCAGCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87624256 77 - 96509753 TCTCAGAAT-CAAAAGGACTCACTATCAACTTGAGGGAAGGAAGTGTGGGTAGTCCATCAGTGGCCAACCTGCAGCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7116088 77 - 13098629 TCTCAGAAT-CAAAAGGACTCACTATCAACTTGAGGGAAGGAAGTGTGGGTAGTCCATCAGTGGCCAACCTGCAGCCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4082868 77 - 4483953 TCTCAGAAT-CAAAAGGACTCACTATCAACTTGAGGGAAGGAAGTGTGGGTAGTCCATCAGTGGCCAACCTGCAGCCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24713062 77 + 33263144 TCTCAGAAT-CAAAAGGACTCACTATCAACTTGAGGGAAGGAAGTGTGGGTAGTCCATTGGTGGCCAACCTGCAGCCA i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 931603 77 + 1946073 TCTCAGAAT-CACAAGGACTCACTATCAACTTGAGGGAAGGAAGTGTGGGTAGTCCATCGGTGGCCAACCTGCAGCCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1962342 70 - 2117846 TCTCAGAATTCAAAAGGACTC---ATCAACTT-----GAGGAAGTGTGAGTAGTTCGTCAGTGGCCACCCTGCAGCCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8875518 73 - 16357246 TCTCAGACTCCAAAAGAACTCATTATCAACTT-----GAGGAAGCGTGAGTAGTCCGTCGGTGGCCACGCTGCAGCCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1358697 73 - 1807191 TCTCAGCATCCAGAAGAACTCATTATCAACTT-----GAAGAGGTGTGAGTAGTCCGTCGGTGGCCACCCTGCAGCCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 38593 73 + 5963231 TCTCAGAATCCAAAAGGACTCATTATCAACTT-----AAGGAAGTGTGAGCAGTCCGTCGGTGGCCACCCTGCAGCCA i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82826561 76 + 104043685 CTTCAGGA--AAAAAGGCCCCATCACCAAACCAAAGAAACAGAAGACAGCCAATCTATCAGTGGCCGACTGTCAACTG i mm10.chr15 C 0 C 0 s canFam3.chr10 46097898 71 - 69331447 ATTCAGAAC---AAAGGTCTGGCTGTTAAC----GGAAGGGATCTGTGGCTGATCTGTCAGGAGCTTACCCGCAGCAG i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 76154 75 + 1056298 TCTTTCAAG-GAAAAGGATTCCCCATCAGCCCTGGGAAATGCAG-GTGGCAGGCTTGCTGG-GGCCTAGCCACAGCTA i dasNov3.JH570235 C 0 I 67 e otoGar3.GL873526 36302774 366 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I e manLeu1.NW_012102031v1 13993913 5962 - 14338769 T a score=171182.000000 s hg38.chr22_GL383582v2_alt 91358 20 + 162811 TGTCTGCTG--CCACtttcttt s panTro5.chr22 28871250 20 + 37823149 TGTCTGCTG--CCACtttcttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41145844 20 + 50109623 TGTCTGCTG--CCACtttcttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3168582 19 + 4464012 TGTCTGCTG--CCAC-ttcttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106664533 20 - 115148730 TGTCTGCTG--CCACtttattt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84279324 20 + 92844088 TGTCTGCTG--CCACtttcttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87624333 20 - 96509753 TGTCTGCTG--CCACtttcttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7116165 20 - 13098629 TGTCTGCTG--CCACtttcttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4082945 20 - 4483953 TGTCTGCTG--CCACtttcttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24713139 20 + 33263144 TGTCTGCTG--CCACtttcttt i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 931680 20 + 1946073 TGTCTGCTG--CCACtttcttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1962412 20 - 2117846 TGTCAGCTG--CCAAtttcttt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8875591 20 - 16357246 TGTGGACTC--CCAAtttcttt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1358770 20 - 1807191 TGTCGGCTG--CCAAtttcttt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 38666 20 + 5963231 TGTCAGCTG--CCAAtttcttt i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82826637 22 + 104043685 TTCCTACTAATCTACTTTTCTT i mm10.chr15 C 0 C 0 s canFam3.chr10 46097969 20 - 69331447 TTCCTGCTA--TAGCCCTCCCT i canFam3.chr10 C 0 I 44 e dasNov3.JH570235 76229 67 + 1056298 I e otoGar3.GL873526 36302774 366 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I e manLeu1.NW_012102031v1 13993913 5962 - 14338769 T a score=32418.000000 s hg38.chr22_GL383582v2_alt 91378 9 + 162811 tttt-------gagat s panTro5.chr22 28871270 9 + 37823149 tttt-------gagat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41145864 9 + 50109623 tttt-------gagat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3168601 9 + 4464012 tttt-------gagat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106664553 9 - 115148730 ttct-------gagag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84279344 9 + 92844088 tttt-------gagat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87624353 9 - 96509753 tttt-------gagat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7116185 9 - 13098629 tttt-------gagat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4082965 9 - 4483953 tttt-------gagat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24713159 9 + 33263144 tttt-------gagat i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 931700 9 + 1946073 tttt-------gagat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1962432 15 - 2117846 ttttttt-cccgagac i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8875611 14 - 16357246 ttttttt--ccgagac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1358790 15 - 1807191 ttttttc-cccaagac i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 38686 16 + 5963231 ttttttttttcgggac i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82826659 9 + 104043685 ATAC-------AAGGT i mm10.chr15 C 0 I 326 e dasNov3.JH570235 76229 67 + 1056298 I e canFam3.chr10 46097989 44 - 69331447 I e otoGar3.GL873526 36302774 366 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I e manLeu1.NW_012102031v1 13993913 5962 - 14338769 T a score=2107478.000000 s hg38.chr22_GL383582v2_alt 91387 264 + 162811 ggagtcttgctttgtcgcccaggctggagtgcagtagcgcaatcttggctcactgcaacctctgcctcccagtttcaagccattctcctgcctca-gcctcctgagtagctgggattacaggcgtatgccaccacgccaggctaatttttgtatttttagtagagatggggttttg-catattggccaagctggtctcaaactcctgacct---------------------------------------------------caTCGCATCTGGCCTCCTGCTGCCACTTTCTTACTCAAGAGGCCC-GAAGATATGG s panTro5.chr22 28871279 264 + 37823149 ggagtcttgctttgtcgcccaggctggaatgcagtagcgcaatcttggctcactgcaacctctgcctcccagtttcaagccattctcctgcctca-gcctcctgagtagctgggattacaggcatatgccaccacgccaggctaatttttgtatttttagtagagatggggttttg-catattggccaagctggtctcaaactcctgacct---------------------------------------------------caTCGCATCTGGCCTCCTGCTGCCACTTTCTTACTCAAGAAGCCC-GAAGACATGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41145873 264 + 50109623 ggagtcttgctttgtcgcccaggctggaatgcagtagcgcaatcttggctcactgcaacctctgcctcccagtttcaagccattctcctgcctca-gcctcctgagtagctgggattacaggcatatgccaccacgccaggctaatttttgtatttttagtagagatggggttttg-catattggccaagctggtctcaaactcctgacct---------------------------------------------------caTCGCATCTGGCCTCCTGCTGCCACTTTCTTACTCAAGAAGCCC-GAAGATATGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3168610 264 + 4464012 ggagtcttgctttgtcgcccaggctggagcgcagtagcgcaatcttggctcactgcaacctctgcctcccagtttcaagccattctcctgcctca-gcctcctgagtagctgggattacaggcgtatgccaccatgccaggctcatttttgtatttttagtagagatggggttttg-catattggccaagctggtctcaaactcctgacct---------------------------------------------------caTCGCACCCGGCCTCCTGCTGCCACTTTCTTACTCAAGAAGCCC-AAAGATATGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106664562 265 - 115148730 ggagtcttgctttgtcgcccacgctggagtgcagtagcgcaatcttggctcactgcaacctctgcctcccggtttcaagcgattctcctgcctca-gcctcctgagtagctaggattacaggcatgtgccaccacgccaggata--------atttttagtagagatggggttttg-catattggccaagctggtctcaaactcctgacctcaag------------------------------------------tgagccaccgcacccggcctccTGCTGCCACTTTCTTACTCAAGGAGCCC-GAAGATATGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84279353 274 + 92844088 ggagtcttgctttgttgcccaggctggagtgcagtggcgcaatcttggctcccttcaacctctgcctcctggtttcaagcgattctcctgcctcaggcctcctgaggagttgggattacaggcatgtgctaccacgcccggctaatttttgtatttttagtagagatggggttttg-catgttggccaagctggtctcaaactcctgacctcaag------------------------------------------tgagccaccaccaccggcctccTGCTGCCACTTTCTTACTCAAGGAGCCC-GAAGATATGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87624362 274 - 96509753 ggagtcttgctttgttgcccaggctggagtgcagtggcgcaatcttggctcccttcaacctctgcctcctggtttcaagcgattctcctgcctcaggcctcctgaggagttgggattacaggcatgtgctaccacgcctggctaatttttgtatttttagtagagatggggttttg-catgttggccaagctggtctcaaactcctgacctcaag------------------------------------------tgagccaccaccaccggcctccTGCTGCCACTTTCTTACTCAAGGAGCCC-GAAGATATGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7116194 274 - 13098629 ggagtcttgctttgttgcccaggctggagtgcagtggtgcaatcttggctcccttcaacctctgcctcctggtttcaagcgattctcctgcctcaggcctcctgaggagttgggattacaggcatgtgctaccacgcccggctaatttttgtatttttagtagagatggggttttg-catgttggccaagctggtctcaaactcctgacctcaag------------------------------------------tgagccaccaccaccggcctccTGCTGCCACTTTCTTACTCAAGGAGCCC-AAAGATATGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4082974 274 - 4483953 ggagtcctgctttgttgcccaggctggagtgcagtggcgcaatcttggctcccttcaacctctgcctcctggtttcaagcgattctcctgcctcaggcctcctgaggagttgggattacaggcatgtgctaccacgcccggctaatttttgtatttttagtagagatggggttttg-catgttggccaagctggtctcaaactcctgacctcaag------------------------------------------tgagccaccactaccggcctccTGCTGCCACTTTCTTACTCAAGGAGCCC-GAAGATATGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24713168 273 + 33263144 ggagtcttgctttgttgcccaggctggagtgcagtggcacaatcttggctcccttcaacctctgcctcctggtttcaagcgattctcctgcctca-gcctcctgaggagttgggattacaggcatgtgctaccacgcccggctaatttttgtatttttagtagagatgggattttg-catgttggccaagctggtctcaaactcctgacctcaag------------------------------------------tgagccaccacacccggccttcTGCTGACACTTTCTTACTCAAGGAGCCC-GAAGATATGG i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 931709 273 + 1946073 ggagtcttgctttgttgcccaggctggagtgcagtggcgcaatcttggctcccttcaacctctgcctcctggtttcaagcgattctcctgcctca-gcctcctgaggcgttgggattacaggcatgtgctaccacgcccggctaatttttgtatttttagtagagatggggttttg-catgctggcgaagctggtctcaaactcctgacctcaag------------------------------------------tgagccaccgcacccagcctccTGCTGCCACTTTCTTACTCAAGGAGCCT-GAAGATCTGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1962447 303 - 2117846 agaatcttgctctgtcccccaggctggagtgcaatggcacgatcttggctcactgctacctctgcctcccgggttcaagttattctcctgcctca-gcctcctgagtagctgggattacaggtgtgcaccaccacacctggctaatttttgtatttttagtagagatagggttttgccatgttggccaggctggtctcaaactcctgacctcatgatctgctcacctcagccttccaaagttctgggattacaggcatgaaccactatgcccagccTCTTGCTGTCACTTTCTTACTCAGGAGG-------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8875625 317 - 16357246 agaatctcgctctgtccccctggctggagtgcaatggcacgatgttggctcactgcaacctctgcctcctgggttcaagttattctcctgcctca-gcctcctgagtagctgggattacaggtgtgcatcaccacacccggctaatttttgtatttttagtagagagagggttttgccacgttggccaggctggtctcaaactcctgacctcatgatctgctcacctcggcctcccaaagtgctggaattacaggcatgaaccaccgtgcGCAGACTCTTGCTGTCACTTTCTTAATCAAGGAGCCCAAAAGATATGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1358805 317 - 1807191 agaatcttgctctgtcccccaggctggagtgcaatggcacaatctcagctcactgcaaactctgcctcctgggttcaagttattctcctgcctca-gcctcctgagtagctgggattataggtgtgcaccaccacacccggctaatttttgtatttttagtagagatagggttttgccatgttggccaggctggtctcaaactcctgacctcatgatctgctcacctcggcctcccaaagtgctgggattacaggcatgaaccaccgtgcccagccTCTTACTGTCACTTTCTTACTCAAGGAGCCCAAAAGATATGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 38702 317 + 5963231 agaatctcgctctgtcccccaggctggagtgcaatggcacgatcttggctcactgcaacctctgcctcccgggttcaagttattctcctgcctca-gcctcctgagtagctgggattagaggtgagcactaccacacccggctaatttttgtatttttagtagagatagggttttgccatgttggccaggctggtctcaaactcctgacctcatgatctgctcacctcggcctcccaaagtgctgggattacaggcacgaaccactgtgcccagccTCTCGCTGACACTTTCTACTTCAAGAAGCCCAAAAGATATGG i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82826668 326 + 104043685 I e dasNov3.JH570235 76229 67 + 1056298 I e canFam3.chr10 46097989 44 - 69331447 I e otoGar3.GL873526 36302774 366 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I e manLeu1.NW_012102031v1 13993913 5962 - 14338769 T a score=983254.000000 s hg38.chr22_GL383582v2_alt 91651 103 + 162811 CCCTCCCTACCCTGGGGGATGAATCAcagtgagtggtggccatttaggaatgggtatggtcaagcatttctggtaggaaagtctgcaggaaaaagggcttctg s panTro5.chr22 28871543 103 + 37823149 CCCTCCCTACCCTGGGGGATGAATCAcagtgagtggtggccatttaggaatgggtatggtcaagcatttctggtaggaaagtctgcaggaaaaagggcttctg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41146137 103 + 50109623 CCCTCCCTACCCTGGGGGATGAATCAcagtgagtggtggccatttaggaatgggtatggtcaagcatttctggtaggaaagtctgcaggaaaaagggcttctg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3168874 102 + 4464012 CCCTCCCTACCCTGGGGGATGAATCAcagtgagtggtggccatttaggaatgggtatggtcaagcatttctggtaggaaagtctgcagg-aaaagggcttctg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106664827 103 - 115148730 CCCTCCCTACCCTGGGGGATGAATCACAGTGAGTGGTGGCCATTAAGGAATGGGTATGGTCAAGAATTTCTGGTAGCAAAGTCTGCAGGAGAAAGGGCTTCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84279627 103 + 92844088 CCCTCCCTACCCCGGGGAATGAATCACAGTGAGTGGTGGCCATTTAGGAATGGGTATAATCAAGCATTTCTGGTAGGAAAGTCTGCAGGAAAAAGGGCTTCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87624636 103 - 96509753 CCCTCCCTACCCCGGGGAATGAATCACAGTGAGTGGTGGCCATTTAGGAATGGGTATAATCAAGCATTTCTGGTAGGAAAGTCTGCAGGAAAAAGGGCTTCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7116468 103 - 13098629 CCCTCCCTACCCCGGGGAATGAATCACAGTGAGTGGTGGCCATTTAGGAATGGGTATAATCAAGCATTTCTGGTAGGAAAGTCTGCAGGAAAAAGGGCTTCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4083248 103 - 4483953 CCCTCCCTACCCCGGGGAATGAATCAcagtgagtggtggccatttaggaatgggtataatcaagcatttctggtaggaaagtctgcaggaaaaagggcttctg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24713441 103 + 33263144 CCCTCCCTACCCCGGGGAATGAATCACAGTGAGTGGTGGCCATTTAGGAATGGGTATGATCAAGCATTTCTGGTAGGAAAGTCTGCAAGAAAAAGGGCTTCTG i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 931982 103 + 1946073 CCCTCCCTACCCCGGGGAATGAATCAcagtgagtggtggccatttaggaatgggtatgatcaaacatttctggtaggaaagtctgcaggaaaaagggcttttg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1962750 102 - 2117846 CCCTCCCCACCCTGGGGGATGAATCACAGTGAGTGGTGGCCATTTAGAAATGGGTATG-TCAAGCATTTCTGGTAGGAAAACCTGCAAGAAAAAAGGCTTTTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8875942 102 - 16357246 CCCTCCCCACCTTGGGGGATGAATCACAGTGAGTGGTGGCCATTTAGAAATGGGTATG-TCAAGCATTTCTGGTAGGAAAGCCTGCAAGAAAAAAGCCTTTTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1359122 102 - 1807191 CCCTCCTCACCCTGGGGGATGAATCACAGTGAGTGGTGGCCATTTAGAAATGGGTATG-TCAAGCATTTCTGGTAGGAAAGCCTGCAAGAAAAAAGGCTTTTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 39019 102 + 5963231 TCCTCCCCACCCTGGGAGATGAATCACAGTGCGTGGTGGCCATTTAGAAACGGGTATG-TCAAGCATTTCTGGTAGGAAAGCCTGCAAGAAAAAAGCCTTTTG i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46098033 98 - 69331447 CCTTCCCCACCCTGGGGGGTGAATCTCAATGAGTGATGGCTGTTTACAAATGGGTGTA-GCAAGCGTTCC----AGGAATGGCAGCAGgttaaagaacttctg i canFam3.chr10 I 44 I 3 e mm10.chr15 82826668 326 + 104043685 I e dasNov3.JH570235 76229 67 + 1056298 I e otoGar3.GL873526 36302774 366 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I e manLeu1.NW_012102031v1 13993913 5962 - 14338769 T a score=136953.000000 s hg38.chr22_GL383582v2_alt 91754 48 + 162811 aaaacattttgcact-ccccccaacctt----ttttttttt---tt---ttttaatata s panTro5.chr22 28871646 44 + 37823149 aaaacattttgcact-ccccccaacctt----ttttttttt---tt-------aatata i panTro5.chr22 C 0 C 0 s panPan2.chr22 41146240 44 + 50109623 aaaacattttgcact-ccccccaacctt----ttttttttt---ta-------aatata i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3168976 49 + 4464012 aaaacattttgcactcccccccaacctt----ttttttttt---tt---tttaaatata i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106664930 52 - 115148730 AAAACATTTTGCACTCCCCCCCAACCtt----ttttttttt---ttttttttttccata i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84279730 36 + 92844088 AAAACATTTTGCACT-CCCACCACCttt----ttttttata------------------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87624739 36 - 96509753 AAAACATTTTGCACT-CCCACCATCttt----ttttttata------------------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7116571 36 - 13098629 AAAACATTTTGCACT-CCCACCACCttt----ttttttata------------------ i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4083351 36 - 4483953 aaaacagtttgcact-cccctcaccttt----tttttttta------------------ i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24713544 39 + 33263144 AAAACATTTTGCACT-CCCCCTACCttt----tttttttttata--------------- i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 932085 36 + 1946073 aaaacattttgcacc-ccccaccttttt----ttttttata------------------ i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1962852 39 - 2117846 CCAACATTTCACACC-ACTCTCCtttttctc-tttttttaa------------------ i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8876044 39 - 16357246 CAAACATTTTGCACC-ACTCTCAtttttctc-tttttttaa------------------ i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1359224 39 - 1807191 CAAACATTTCGCACC-ACTCTCCtttttctc-tttttttaa------------------ i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 39121 40 + 5963231 CAAACATTTCGCACC-ACTCTCCtttttctcttttttttaa------------------ i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82826668 326 + 104043685 I e dasNov3.JH570235 76229 67 + 1056298 I e canFam3.chr10 46098131 3 - 69331447 I e otoGar3.GL873526 36302774 366 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I e manLeu1.NW_012102031v1 13993913 5962 - 14338769 T a score=1483816.000000 s hg38.chr22_GL383582v2_alt 91802 153 + 162811 ttttgagacgatgtcttgctctgtcacccaggatggagtgcagtggcacaatcatggctcactgcagtctctacctcccaggctcaggtgattctcctgacctcagcctcccgagtagctgagactacagggtgtgtgctaccacatc--cagct--- s panTro5.chr22 28871690 153 + 37823149 ttttgagacgatgtcttgctctgtcacccaggatggagtgcagtggcacaatcatggctcactgcagtctctacctcccaggctcaggtgattctcctgacctcagcctcccgagtagctgagactacagggtgtgtgctaccacatc--cagct--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41146284 153 + 50109623 ttttgagacgatgtcttgctctgtcacccaggatggagtgcagtggcacaatcatggctcactgcagtctctacctcccaggctcaggtgattctcctgacctcagcctcccgagtagctgagactacagggtgtgtgctaccacatc--cagct--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169025 153 + 4464012 ttttgagacaatgtcttgctctgccacccaggatggagtacagtggcacaatcatggctcactgcagtctctacctcccaggctcaggtgattctcctgacctcagcctcccgagtagctgagactacagggtgtgtgctaccacatc--cagct--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106664982 154 - 115148730 ttttgagacgatgtcttgctctgccacccaggatggagtgcagtggcacaatcatggctcactgcagtctctacctcccgggctcaggtgattctccc-acctcagcctcccgagtagctgagactatagggtgtgtgctaccacatccacagct--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84279766 151 + 92844088 ttttgagacaatgtcttgctctgtcacccaggctggagtacagtggcacaatcatggctcactgcagcctctacctcctgggctcaggtgattctccc-acctcagcct-ccgagtagctgagactacagggtgtgtgctactacatc--cagct--- i rheMac8.chr10 C 0 I 3 s macFas5.chr10 87624775 151 - 96509753 ttttgagacaatgtcttgctctgtcacccaggctggagtgcagtggcacaatcatggctcactgcagcctctacctcctgggctcaggtgattctccc-acctcagcct-ccgagtagctgagactacagggtgtgtgctactacatc--cagct--- i macFas5.chr10 C 0 I 3 s macNem1.NW_012012688v1 7116607 151 - 13098629 ttttgagacaatgtcttgctctgtcacccaggctggagtgcagtggcacaatcatggctcactgcagcctctacctcctgggctcagatgattctccc-acctcagcct-ccgagtagctgagactacagggtgtgtgctactacatc--cagct--- i macNem1.NW_012012688v1 C 0 I 3 s cerAty1.NW_011999588v1 4083387 151 - 4483953 ttttgagacaatgtcttgctctgtcaccccggctggagtgcagtggcacaatcatggctcactgcagcctctacctcctgggctcaggtgattctccc-acctcagcct-ccgagtagctgagactacagggtgtgtgctactacatc--cagct--- i cerAty1.NW_011999588v1 C 0 I 3 s chlSab2.chr19 24713583 151 + 33263144 ttttgagacaatgtcttgctctgtcacccaggctggagtgcagtggcacaatcatggctcactgcagcctctacctgccgggctcaggtgattctccc-acctcagcct-ccgagtagctgagactacagggtgtgtgctaccacatc--cagct--- i chlSab2.chr19 C 0 I 3 s manLeu1.NW_012102031v1 13987951 151 - 14338769 ttttgagacaatgtcttgctctgtcacccaggctggagtgcagtggcacaatcatggctcactgcagcctctacctcctgggctcaggtgattctccc-acctcagcct-ccgagtagctgagactacagggtgtgtgctactacatc--cagct--- i manLeu1.NW_012102031v1 T 5962 I 3 s colAng1.NW_012115588v1 932121 150 + 1946073 ttttgagacaatgtcttgctctgtcacccaggctggagtgcagtggcacaatcatggctccctgcagcctctacctcccgggctcaggtgattctccc-acctcagcct-ccgagtagctgagactacaggg-gtgtgctaccacatc--cagct--- i colAng1.NW_012115588v1 C 0 I 315 s calJac3.chrUn_GL286373 1962891 154 - 2117846 atttaagaaaatgtcttgctctgtcccccaggctgtagtgcagtggcataatcatggctcactgcagcctctacctcccaggctcaggtgattctccc-acctcagcctcttgagtagctgagactaca-ggtgtatgctaccacatc--cagctaat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8876083 154 - 16357246 ttttaagaaaatgtcttgctctgtcacccaggctgtagtgcagtggcataatcatggctcactgcagcctctacctctcaggctcaggtgattctccc-acccgagcctcttgagtagctgagactaca-ggtgtgtgctaccacatt--cagctaat i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1359263 154 - 1807191 ttttaagaaaatgtcttgctctgtcacccaggctgtagtgcagtggcataatcatggctcactgtagcctctacctcccaggctcaggtgattctccc-acctcagcctcttgagtagctgagactaca-ggcgtgtgctaccacatc--cagctaat i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 39161 154 + 5963231 ttttaagaaaatgtattgctctgtcacccaggctgtagtgcagtggcataatcatggctcactgcagcctctacctcccaggctcaggtgattctctc-acctcagcctcttgagtagctgagactaca-ggcatgtgctaccacatc--cagctaat i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82826668 326 + 104043685 I e dasNov3.JH570235 76229 67 + 1056298 I e canFam3.chr10 46098131 3 - 69331447 I e otoGar3.GL873526 36302774 366 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I a score=30337.000000 s hg38.chr22_GL383582v2_alt 91955 5 + 162811 ttttc s panTro5.chr22 28871843 5 + 37823149 ttttc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41146437 5 + 50109623 ttttc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169178 5 + 4464012 ttttc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665136 5 - 115148730 ttttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84279920 5 + 92844088 ttttt i rheMac8.chr10 I 3 C 0 s macFas5.chr10 87624929 5 - 96509753 tttta i macFas5.chr10 I 3 C 0 s macNem1.NW_012012688v1 7116761 5 - 13098629 tttta i macNem1.NW_012012688v1 I 3 C 0 s cerAty1.NW_011999588v1 4083541 5 - 4483953 ttttt i cerAty1.NW_011999588v1 I 3 C 0 s chlSab2.chr19 24713737 5 + 33263144 ttttt i chlSab2.chr19 I 3 C 0 s manLeu1.NW_012102031v1 13988105 5 - 14338769 ttttt i manLeu1.NW_012102031v1 I 3 C 0 s calJac3.chrUn_GL286373 1963045 5 - 2117846 ttaaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8876237 5 - 16357246 ttttt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1359417 5 - 1807191 ttttt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 39315 5 + 5963231 ttttt i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82826668 326 + 104043685 I e dasNov3.JH570235 76229 67 + 1056298 I e canFam3.chr10 46098131 3 - 69331447 I e otoGar3.GL873526 36302774 366 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I e colAng1.NW_012115588v1 932271 315 + 1946073 I a score=1003360.000000 s hg38.chr22_GL383582v2_alt 91960 114 + 162811 aaaaaa------tgtttttgtagagacagggtctcactatgttgcccaggctgtccttgaactcctgggctcaagcaattctcccatctcagcctccaaaagtgctaagattacaagcat s panTro5.chr22 28871848 114 + 37823149 aaaaaa------tgtttttgtagagacagggtctcactatgttgcccaggctgtccttgaactcctgggctcaagcaattctcccatctcagcctccaaaagtgctaagattacaagcat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41146442 114 + 50109623 aaaaaa------tgtttttgtagagacagggtctcactatgttgcccaggctgtccttgaactcctgggctcaagcaattctcccatctcagcctccaaaagtgctaagattacaagcat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169183 114 + 4464012 aaaaaa------tgtttttgtagagacagggtctcactatgttgcccaggctgttcttgaactcctgggctcaagcaattctcccatctcagcctccaaaagtgctaagattacaagtat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665141 114 - 115148730 aaaaaa------tgtttttgtagagattgggtgtcactatgttgcccgggctgttcttgaactcctgggctcaagcggttctcccatctcagcctccaaaagtgctaggattataagtat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84279925 105 + 92844088 aaaaaa------agtttttgtagagatggggtctcactatgttgcctaggctgttcttgaactcctgggttcaagcaattctcccatctcagtgtccaaaagtgct---------agTAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87624934 105 - 96509753 aaaaaa------agtttttgtagagatggggtctcactatgttgcctaggctgttcttgaactcctgggttcaagcaattctcccatctcagtgtccaaaagtgct---------agTAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7116766 105 - 13098629 aaaaaa------agtttttgtagagatggggtctcactatgttgcctaggctgttcttgaactcctgggttcaagcaattctcccatctcagtgtccaaaagtgct---------agTAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4083546 105 - 4483953 aaaaaa------agtttttgtagagatggggtctcactatgttgcctaggctgttcttgaactcctgggttcaagcaattctcccacctcagtgtccaaaagtgct---------agtat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24713742 105 + 33263144 aaaaaa------tgtttttgtagagatggggtctcactatgttgcccgggctgttcttgaactcctgggttcaagcaattctcccatctcagtgtccaaaagtgct---------agtat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988110 101 - 14338769 aaaaaa------agtttttgtagagatggggt----ctatgttgcctaggctgttcttgaactcctgggttcaagcaattctcccatctcagtgtccaaaagtgct---------agtat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 932586 105 + 1946073 aaaaaa------agtttttgtagagatggggtctcagtatgttgcccgggctgttcttgaactcctgggttcaagcaattctcccatctcagtgtccaaaagtgct---------agtat i colAng1.NW_012115588v1 I 315 C 0 s calJac3.chrUn_GL286373 1963050 120 - 2117846 aaaaaaaaaaaacgtttttgtagagatggggtcacactattttgcctgggctgttcttgaactcctcagctcaagcaattctcccatcccagcctccaaatgtgctaggattacaagtat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8876242 113 - 16357246 aaaaaa-------gtttttgtagagatggggtctcactatgttgtctggactgttcttcaactccttggctcaagcaattctcccatctcagcctccaaaagtgctaggattacaagTAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1359422 114 - 1807191 aaaaaa------cgtttttgtagagatggggtctcactatgttgcctgggctgttcttgaactccttggctcaagcaattttcccatctcagcctccaaaagtgctaggatgacaagtat i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 39320 115 + 5963231 aaaaaa-----acgtttttgtagagatggggtctcactacgttgcatgggacgtccttgaactcctcggctcaagcaattctcccatctcagcctccaaaagtgctaggattacaagtat i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82826668 326 + 104043685 I e dasNov3.JH570235 76229 67 + 1056298 I e canFam3.chr10 46098131 3 - 69331447 I e otoGar3.GL873526 36302774 366 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I a score=23880.000000 s hg38.chr22_GL383582v2_alt 92074 2 + 162811 ga s panTro5.chr22 28871962 2 + 37823149 ga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41146556 2 + 50109623 ga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169297 2 + 4464012 ga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665255 2 - 115148730 ga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280030 2 + 92844088 GA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625039 2 - 96509753 GA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7116871 2 - 13098629 GA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4083651 2 - 4483953 ga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24713847 2 + 33263144 GA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988211 2 - 14338769 GA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 932691 2 + 1946073 ga i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963170 2 - 2117846 ga i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8876355 2 - 16357246 aa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1359536 2 - 1807191 ga i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 39435 2 + 5963231 ga i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 76296 2 + 1056298 ga i dasNov3.JH570235 I 67 C 0 e mm10.chr15 82826668 326 + 104043685 I e canFam3.chr10 46098131 3 - 69331447 I e otoGar3.GL873526 36302774 366 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I a score=196174.000000 s hg38.chr22_GL383582v2_alt 92076 15 + 162811 aagtttcaccctctc s panTro5.chr22 28871964 15 + 37823149 aagtttcaccctctc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41146558 15 + 50109623 aagtttcaccctctc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169299 15 + 4464012 aagtttcaccctctc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665257 15 - 115148730 AAGtttcaccctctc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280032 15 + 92844088 AAGTTTCACCCTCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625041 15 - 96509753 AAGTTTCACCCTCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7116873 15 - 13098629 AAGTTTCACCCTCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4083653 15 - 4483953 aagtttcaccctctc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24713849 15 + 33263144 AAGTTTCACCCTCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988213 15 - 14338769 AAGTTTCACCCTCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 932693 15 + 1946073 aagtttcaccctctc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963172 15 - 2117846 AAGtttcaccctctc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8876357 15 - 16357246 aagtttcaccctttc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1359538 15 - 1807191 AAGTTTCACCCTCTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 39437 15 + 5963231 AAGtttcaccctctc i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46098134 15 - 69331447 aagtttcacccctcc i canFam3.chr10 I 3 I 1 s dasNov3.JH570235 76298 15 + 1056298 aagttgtgctctttt i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82826668 326 + 104043685 I e otoGar3.GL873526 36302774 366 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I a score=1326535.000000 s hg38.chr22_GL383582v2_alt 92091 122 + 162811 aaaaagagacaagagggaggaacaggtaa-ttttt--cttgcgcagcctctgtgag--gattag-----ac-agtgggatctgtggcagccacagtatcaccatgaggggacagccctgaagacaaagccagc s panTro5.chr22 28871979 122 + 37823149 aaaaagagacaagagggaggaacaggtaa-ttttt--cttgcgcagcctctgtgag--gattag-----ac-agtgggatctgtggcagccacagtatcaccatgaggggacagccctgaagacaaagccagc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41146573 122 + 50109623 aaaaagagacaagagggaggaacaggtaa-ttttt--cttgcgcagcctctgtgag--gattag-----ac-agtgggatctgtggcagccacagtatcaccatgaggggacagccctgaagacaaagccagc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169314 122 + 4464012 aaaaagagacaagagggaggaacaggtaa-ttttt--cttgcgcagcctctgtgag--gattag-----ac-agtgggatctgtggcagccacagtatcaccatgaggggacagccctgaagacaaagccagc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665272 122 - 115148730 aaaaagagacaagagggaggaacaggtaa-ttttt--cttgctcagcctctgtgag--gactag-----ac-ggtgggatctgtggcagccacagtatcaccatgaggggacagccctgaagacaaagccaga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280047 120 + 92844088 AAAAAGAGACAACAGGGAGGAACAGGGAA-TTTTC----TGCTCAGCCACTGTGAG--GGCTAG-----AC-GGTGggatctgtggcagccacagtatcaccataaggggacagccctgaagacaaagccagt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625056 120 - 96509753 AAAAAGAGACAACAGGGAGGAACAGGGAA-TTTTC----TGCTCAGCCACTGTGAG--GGCTAG-----AC-GGTGggatctgtggcagccacagtatcaccataaggggacagccctgaagacaaagccagt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7116888 120 - 13098629 AAAAAGAGACAACAGGGAGGAACAGCGAA-TTTTC----TGCTCAGCCACTGTGAG--GGCTAG-----AC-GGTAggatctgtggcagccacagtatcaccataaggggacagccctgaagacaaagccagt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4083668 120 - 4483953 aaaaagagacaacagggaggaacaggtaa-ttttc----tgctcagcctctgtgag--gactag-----ac-ggtgggatctgtggcagccacagtatcaccataaggggacagccctgaagacaaggccagt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24713864 120 + 33263144 AAAAAGAGACAACAGGGAGGAACAGGTAA-TTTTC----TGCTCAGCCTCtgtgag--gactag-----ac-ggtgggatctgtggcagccacagtatcaccataaggggacagccctaaagacaaagccagt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988228 120 - 14338769 AAAAAGAGACAACAGGGAGGAACAGGTAA-TTTTC----TGCTCAGCCTCtgtgag--gactag-----ac-ggtaggatctgtggcagccacagtatcaccataaggggacagccctgaagacaaagccagt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 932708 125 + 1946073 aaaaagagacaagggggaggaacaggtaa-ttttc---ttgctcagcctctatgag--gactgggatctgt-ggtgggat-ggtggcagccacagtatcaccataaggggacagccctgaagacaaagccagc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963187 121 - 2117846 aaagagagagaatagggaggaacaggtaa-tcttc---ttgcctggcctctatgag--gactag-----ac-agtgggatctgtagcagccactgtatcgccacgaggggacagccctaaagacaaagtcagc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8876372 122 - 16357246 aaagagagagaagagggaggaacaggtaatttttt---ttgcctggcctctgtgag--gtctag-----ac-agtgggatctgtagcagccactgtatcgccacgaggggacagccctaaagacaaagccagc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1359553 121 - 1807191 CAAGAGAGAGAAGAGGGAGGAACAGGTAA-TTTCC---TTGGTTGGCCTCtgtgag--gactag-----ac-agtgggatctgtagcagccactgtatcgccatgaggggacagccctaaagacaaagccagc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 39452 120 + 5963231 aaagagagagaagaggga-gaacaggtaa-tcttc---ttgcctggcctctgtgag--gactag-----ac-agtgggatctatagcagccactgtattgccacgaggggacagccctaaagacaaagccagc i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36303140 100 - 42659167 AAAGAGGAACAAGAGGGACAAATAGGCCA-TATTC---TTGGTGCACCTCTGTGGG--GGCTGA-----A---------------------ATGGTGTCactatgaaggaacag-cctgaagacaaagctgat i otoGar3.GL873526 I 366 C 0 s canFam3.chr10 46098150 119 - 69331447 caaaagggacaagaggcaggaataggctg-tctga---tcactcagc--ctattag--ggtggg-----at-ggcgagatctgttgtaatcctcttatcaccatgaggggacagctctgaagacaaagcccaa i canFam3.chr10 I 1 I 1 s dasNov3.JH570235 76313 127 + 1056298 aaaatgggaaaatagggaggaagaggcca-ggttcctcctgcccagcctctgtgagatgacagg-----acaagggggatctgaggcaaccatattattgcagtgaggagacagccccaaagacaaagccaac i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82826668 326 + 104043685 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I a score=1350465.000000 s hg38.chr22_GL383582v2_alt 92213 119 + 162811 ctgctgaggacagaagagtggcaagatggagag-acctgggcctaccatgacactgtcaagcactaaatcacccaaacccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttgttAC--------AGGAA----------ACTT------------------------------------------------------------------------------------------------GGG s panTro5.chr22 28872101 119 + 37823149 ctgctgaggacagaagagtggcaagatggagag-acctgggcctaccatgacactgtcaagcactaaatcacccaaacccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttgttAC--------AGGAA----------ACTT------------------------------------------------------------------------------------------------GGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41146695 119 + 50109623 ctgctgaggacagaagagtggcaagatggagag-acctgggcctaccatgacactgtcaagcactaaatcacccaaacccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttgttAC--------AGGAA----------ACTT------------------------------------------------------------------------------------------------GGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169436 119 + 4464012 ctgctgaggacagaagagtggcaagatggagag-acctgggcctaccatgacactgtcaagcactaaatcacccaaacccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttcttAC--------AGGAA----------ACTT------------------------------------------------------------------------------------------------GGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665394 119 - 115148730 ctgctgaagacagaagagtggcaagatggagag-acctgggcctaccatgacactgtcaagcactaaatcaccgaaacccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttgttAC--------AAGAA----------ACTG------------------------------------------------------------------------------------------------GGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280167 119 + 92844088 ctgctgaggacagaagagtggcaagatggagag-acctggacctaccatgacactgtcaagcactaaatcacccaaacccaagac----------caagcc-----------------------------------------------acctctagcc-------------ttgttaC--------AGGAA----------ACCT------------------------------------------------------------------------------------------------GGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625176 119 - 96509753 ctgctgaggacagaagagtggcaagatggagag-acctggacctaccatgacactgtcaagcactaaatcacccaaacccaagac----------caagcc-----------------------------------------------acctctagcc-------------ttgttAC--------AGGAA----------ACCT------------------------------------------------------------------------------------------------GGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117008 119 - 13098629 ctgctgaggacagaagagtggcaagatggagag-acctggacctaccatgacactgtcaagcactaaatcacccaaacccaagac----------caagcc-----------------------------------------------acctctagcc-------------ttgttAC--------AGGAA----------ACCT------------------------------------------------------------------------------------------------GGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4083788 119 - 4483953 ctgctgaggacagaagagtggcaagatggagag-acctggacctaccatgacactgtcaagcactaaatcacccaaacccaggac----------caagcc-----------------------------------------------acctctagcc-------------ttgttAC--------AGGAA----------ACCT------------------------------------------------------------------------------------------------GGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24713984 119 + 33263144 ctgctgaggacagaagagtggcaagatggagag-acctggacctaccatgacactgtcaagcactaaatcacccaaacccaggac----------cgagcc-----------------------------------------------acctctagcc-------------ttgttAC--------AGGAA----------ACTT------------------------------------------------------------------------------------------------GGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988348 119 - 14338769 ctgctgaggacagaagagtggcaagatggagag-acctggacctaccatgacactgtcaagcactaaatcacccaaacccaggac----------caagcc-----------------------------------------------acctctagcc-------------ttgttAC--------AGGAA----------ACCT------------------------------------------------------------------------------------------------GGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 932833 119 + 1946073 ctgctgaggacagaagagtggcaagatggagag-acctggacctaccatgacactgtcaagcactaaatcacccaaacccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttgttAC--------AGGAA----------ACTA------------------------------------------------------------------------------------------------GGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963308 115 - 2117846 ctgctgaggacagaacagtggcaagatgaagag-acctggacctatcatgacactgtcaagcactaaatcaccaaaccccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttgttaC--------A--------------ACTT------------------------------------------------------------------------------------------------GGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8876494 118 - 16357246 ctgctgaggacagaacagtggcaagacggagag-acctggacctatcatgacactgtcaagcactaaatcaccaaaccccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttgttAC--------AAG-T----------ACTT------------------------------------------------------------------------------------------------GGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1359674 115 - 1807191 ctgctgaggacagaacagtggcaagatggagag-acctggacctaccacgacactgtcaagcactaaatcaccaaatcccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttgttAC--------A--------------ACTT------------------------------------------------------------------------------------------------GGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 39572 115 + 5963231 ctgctgaggacagaatagtggcaagatggagag-acctgaacctaccatgacactgtcaagcactaaatcaccaaaccccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttgttAC--------A--------------ACTT------------------------------------------------------------------------------------------------GGG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36303240 210 - 42659167 gtgctgaggacagaagaatgacaag-----gag-acccagacccatctcgacaccactgagcacttaatcgcctgaccccaggac----------caccct-----------------------------------------------acctacagac-------------ttgttat--------aggaa----------acttaaaaaaGAAAGAACGAAACCAACAAAACCCTTTCCACTTAATTTTATAACCTGCTATCAAATATCCCAATTGATACAGAAAGAGATCTACTATTTAAGA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82826994 114 + 104043685 CTCTTGACTACAGCAGAGTGGGAAGATG-AGAG-ACTTAGACTTATTGTGACACTCTTGAGTACTAACCCAACCAATCCAAGAAT----------TG---C-----------------------------------------------ATATCCAGAC-------------TT-TTAC--------AGGAC----------AACA------------------------------------------------------------------------------------------------GAG i mm10.chr15 I 326 I 143 s canFam3.chr10 46098270 200 - 69331447 ctgctgaagagagcagagtgacaggacagagggaacctgggccctctgtggcaaggctgaggaccacattagccaggtccaggacaccccatcttcaaactgttaagggagagaacaTTAAAAAAAAAAATCACTTAAAAATTTTTTAACCTGCAGTCAAAAAGATACTGGTTGACAC--------AGGAAGGGACCTACTAGTT------------------------------------------------------------------------------------------------GAG i canFam3.chr10 I 1 I 1 s dasNov3.JH570235 76440 184 + 1056298 ccattaagcacagaagagtgaaaagatggagaa-ccct-------ttgtaatactgctgagatctatattagccaaccccaggac----------caccag-----------------------------------------------acctcaagac-------------ttcttattacaggagaggaa----------acat--------------------------------tttccttgctatttaaacccttttTAAAATTTTGTAGTTTCCAAAATTACAGGAGTAATGTTTGAGG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I a score=743228.000000 s hg38.chr22_GL383582v2_alt 92332 59 + 162811 TGCTGCTGTAGAAGggtta-agtatgcatgctctggaacctaaataactgcctggtaagt s panTro5.chr22 28872220 59 + 37823149 TGCTGCTGTAGAAGggtta-agtatgcatgctctggaacctaaataactgcctggtaagt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41146814 59 + 50109623 TGCTGCTGTAGAAGggtta-agtatgcatgctctggaacctaaataactgcctggtaagt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169555 59 + 4464012 TGCTGCTGTAGAAGggtta-agtatgcatgctctggaacctaaataactgcctggtaagt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665513 59 - 115148730 TGCTGCTGTAGAAGggtta-agtatgcatgctctggaacctaaataactacctggtaagt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280286 56 + 92844088 G---GCTGTAGAAGggtta-agtatgcatgctctggaacctaaataactgcctggtaagt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625295 56 - 96509753 G---GCTGTAGAAGggtta-agtatgcatgctctggaacctaaataactgcctggtaagt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117127 56 - 13098629 G---GCTGTAGAAGggtta-agtatgcatgctctggaacctaaataactgcctggtaagt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4083907 59 - 4483953 GGTTGCTGTAGAAGggtta-agtatgcatgctctggaacctaaataactgcctggtaagt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714103 59 + 33263144 GGCTGCTGTAGAAGggtta-agtatgcatgctctggaacctaaataactgcctggtaagt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988467 59 - 14338769 GGCTGCTGTAGAAGggtta-agtatgcatgctctggaacctaaataactgcctggtaagt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 932952 59 + 1946073 GGCTACTGTAGAAGggtta-agtatgcatgctctggaacctaaataactgcctggtaagt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963423 59 - 2117846 CGCTGCTGTAGAAAggtta-agtatgcatgctctggaacctaattaactgcttggtaagt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8876612 59 - 16357246 CGCTGCTGTAGAAGggtta-agtatgcatgctctggaacctaagtaactgcttggtaagt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1359789 59 - 1807191 CACTGCTGTAGAAGggtta-agtatgcatgctctggaacctaagtaactgcttggtaagt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 39687 59 + 5963231 CGCTGCTGTAGAAGggtta-agtatgcatgctctggaacctaagtaactgcttggtaagt i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36303450 60 - 42659167 CACTGCtatataaagtgtataaagtggaggctctggagcctaaatgatagcctggtaaat i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46098471 58 - 69331447 TACTGCTgtataa-ggtca-agtgtataggctctggaacctaaataactccctggtaaat i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 76624 58 + 1056298 CACTGTCATataatggtta-ggagtgtgggctctggaacctaaataactgcct-gtaaat i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82827108 143 + 104043685 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I a score=1926211.000000 s hg38.chr22_GL383582v2_alt 92391 149 + 162811 ggct---cc----actttctagctctgccttc-ttggccaaactcctaacctctg-ttcctcaacctacagacgtggg-actaa-----taatagcact---cacctcatagaaatgtcataagggttaaatgaattaattcaggcttaaaacagtggctgggtcaa s panTro5.chr22 28872279 149 + 37823149 ggct---cc----actttctagctctgccttc-ttggccaaactcctaacctctg-ttcctcaacctacagacgtggg-actaa-----taatagcact---cacctcatagaaatgtcataagggttaaatgaattaattcaggcttaaaacagtggctgggtcaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41146873 149 + 50109623 ggct---cc----actttctagctctgccttc-ttggccaaactcctaacctctg-ttcctcaacctacaaacgtggg-actaa-----taatagcact---cacctcatagaaatgtcacaagggttaaatgaattaattcaggcttaaaacagtggctgggtcaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169614 149 + 4464012 ggct---cc----actttccagctctgccttc-ttggccaaactcctaacctttg-ttcctcaacctacagacgtggg-actaa-----taatagcact---cacctcatagaaatgtcataagggttaaatgaattaattcaggcttaaaacagtggctgggtcaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665572 149 - 115148730 ggct---cc----actttctagctctgccttc-ttggccaaactcctaacctttg-ttcctcaatctacagacgtggg-actaa-----taatagcact---cacctcatagaaacgtcataagggttaaatgaattaattcaggcttaaaatggtggctgggtcaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280342 149 + 92844088 ggct---cc----actttctagttctgccttc-ttggccaaattcctaacctttg-ttcctcaatctacagatgtggg-actaa-----taatggcact---cacctcatagaaatgtcgtaagggttaaatgaattaattcaggcttaaaatggtggctgggtcaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625351 149 - 96509753 ggct---cc----actttctagttctgccttc-ttggccaaattcctaacctttg-ttcctcaatctacagatgtggg-actaa-----taatggcact---cacctcatagaaatgtcgtaagggttaaatgaattaattcaggcttaaaatggtggctgggtcaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117183 149 - 13098629 ggct---cc----actttctagttctgccttc-ttggccaaattcctaacctttg-ttcctcaatctacagatgtggg-actaa-----taatggcact---cacctcacagaaatgtcgtaagggttaaatgaattaattcaggcttaaaatggtggctgggtcaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4083966 149 - 4483953 ggct---cc----actttctagttctgccttc-ttggccaaattcctaacctttg-ttcctcaatctacagatgtggg-actaa-----taatggcact---cacctcatagaaatgtcataagggttaaatgaattaattcaggcttaaaatggtggctgggtcaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714162 149 + 33263144 ggct---cc----actttctagttctgccttc-ttggccaaattcctaacctttg-ttcctcaatctacagatgtggg-actaa-----taatgccact---cacctcatagaaatgtcataagggttaaatgaattaattcaggcttaaaatggtgactgggtcaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988526 149 - 14338769 ggct---cc----actttctagttctgccttc-ttggccaaattcctaacctttg-ttcctcaatctacagatgtggg-actaa-----taatggcact---cacctcatagaaatgtcataagggttaaatgaattaattcaggcttaaaatggtggctgggtcaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933011 147 + 1946073 ggct---cc----actttctagttctgccttc-ttggccaaatttctaacctttg-ttcctcaatctacagacgtggg-actaa-----taatggcact---cacctc--agaaatgtcataagggttaaatgaattaattcaggcttaaaatgctggctgggtcaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963482 148 - 2117846 ggct---cc----actttctagctatgccttc-gtggccaaattcctaaccttta-ttcctcaacctgcaaatgtggg-gctaa-----taatagcact---cacctcatagaaatgtcattagggttaaatgcattaattcaggcttaaaacagtggccaggtca- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8876671 149 - 16357246 ggct---cc----actttctagctatgccttc-gtggccaaattcctaaccttta-ttcctcaacctgcaggtgtggg-gttaa-----taacagcact---cacctcacagaaatgtcattagggttaaatgcattaattcaggcttaaaacagtgGCCAGGTCAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1359848 149 - 1807191 ggct---cc----acttcctagctatgccttc-atggcccaattcttaaccttta-ttcctcaacctgcagatgtggg-gctaa-----taacagcact---cacctcacagaaatgtcattagggttaaatacattaattctggcttaaaacggtggccgggtcaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 39746 150 + 5963231 ggct---cc----actttctagctatgccttcaatggccaaattcccaaccttta-ttcctcaacctgcagatgtggg-actaa-----taacagcact---cacctcatagaaatgtcattagggttaaatgcattaattcaggcttaaaacagtggccgggtcaa i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36303510 153 - 42659167 gactccacc----actttctagatataccttc-ttggccaaatttccaacctttgtttcttcaacctgcaaacatgga-actaa-----taagagtgct---catctcatagaaatattgtgagggttaaatgcaccattccgagcttagaacaatggctggatcaa i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82827251 145 + 104043685 GACT---CT----ACAATCTTACTATGTCTGA-CCTACCAATTTCCTAACCTTTA-T---TGAATCCACACTTAAGGACAGTAC-----AAACAGTGCT---CACCTCACAGAAATG--GTCAGTACTGTATGCATCAATCCAAACTTAAAATAGTGGCTGGCTCAG i mm10.chr15 I 143 C 0 s canFam3.chr10 46098529 158 - 69331447 -gct---cccactgcttccta--tatgtgttc-ttgg-cgaatttccaacctttgtttccttaacctgtaaacatgaa-cctaactaactaattgtactatctacctcacagagatgttgtgagggttcaatgtgtgaatccaggcttaagacagtggctggaccag i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 76682 152 + 1056298 gattctacc----actttctagctatgggttc-ttggtcaaattcctaacctttgtttcctcaacctgcaaatatgtg-gctaa-----aaagagcaat---gacctcagacagaggttgtgagagttaaatgtgttaatccaggcttagaacagtgcct-gatcag i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I a score=1376552.000000 s hg38.chr22_GL383582v2_alt 92540 129 + 162811 aagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACATATGCTAGATAATCTACAAAGACCATCTCATGAA-AAGCAACC-ACACAGCAGGCCTCATCACCATC-CCGGTTTACAA--G-AGGAAAGAG-------------- s panTro5.chr22 28872428 129 + 37823149 aagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACATACGCTAGATAATCTACAAAGACCATCTCATGAA-AAGCAACC-ACACAGCAGGCCTCATCACCATC-CCGGTTTACAA--G-AGGAAAGAG-------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147022 129 + 50109623 aagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACATACGCTAGATAATCTACAAAGACCATCTCATGAA-AAGCAACC-ACACAGCAGGCCTCATCACCATC-CCGGTTTACAA--G-AGGAAAGAG-------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169763 129 + 4464012 aagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACATATGCTAGATAATCTACAAAGACCATCTCATGAA-AAGCAACC-ACACAGCAGGCCTCATCACCAAC-CCGGTTTAGAA--G-AGGAAAGAG-------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665721 129 - 115148730 aagtgctaagtaaatgtGACCCAAGATGACCACGTGTCAGACATATGCTAGATAATCTAAAAAGACCATCTCATGAA-AAGCAAAC-ACATAGCAGGCCTCGTCACCATC-CCAGTTTACAA--G-AGGAAAGAG-------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280491 129 + 92844088 aagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACACATGCTAGATAATCTACAAAGACCACCTCATGAA-AAGCAACC-ACACAGCAGGCCTTGTCACCATC-CCAGTTTACAA--G-AGGAAAGAG-------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625500 129 - 96509753 aagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACACATGCTAGATAATCTACAAAGACCACCTCATGAA-AAGCAACC-ACACAGCAGGCCTTGTCACCATC-CCAGTTTACAA--G-AGGAAAGAG-------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117332 129 - 13098629 aagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACACATGCTAGATAATCTACAAAGACCACCTCATGAA-AAGCAACC-ACACAGCAGGCCTTGTCACCATC-CCAGTTTACAA--G-AGGAAAGAG-------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084115 129 - 4483953 aagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACACATGCTAGATAATCTACAAAGACCACCTCATGAA-AAGCAACC-ACACAGCAGGCCTTGTCACCATC-CCAGTTTACAA--G-AGGAAAGAG-------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714311 129 + 33263144 aagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACACATGCTAGATAACCTACAAAGACCACCTCATGAA-AAGCAACC-ACACAGCAGGCCTTGTCACCATC-CCAGTTTACAA--G-AGCAAAGAG-------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988675 129 - 14338769 aagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACACATGCTAGATAATCTACAAAGACCACCTCATGAA-AAGCAACC-ACACAGCAGGCCTTGTCACCATC-CCAGTTTACAA--G-AGGAAAGAG-------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933158 125 + 1946073 aagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACACATGC----TAATCTACAAAGACCACCTCGTGAA-AAGCAACC-ACACAGCAGGCCTTGTCACCATC-CCAGTTTACAA--G-AGGAAAGAG-------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963630 127 - 2117846 aagtgttaagtaaatgtGACCCAAGGTGACCACGTGTCAGACACATGCTAGATAATCTGCAAAGACCATCTCATGAA-AAGCAACC-AT--AGTAGGCCTCATCACCATC-CCAGTTTACAG--G-AGGAAAGAG-------------- i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1359997 128 - 1807191 aagtg-taagtaaatgtGACCCAAGATGACCATGTGTCAGACACATGCTAGATAATCTGCAAAGACCATCTCATGAA-AAGCAACC-ATACAGCAGGCCTTGTCACCATC-CCAGTTTACAG--G-AGGAAAGAG-------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 39896 129 + 5963231 aagtgttaggtaaatgtGACCCAAGATGactgtgtgtcagacacatgctagataatctgcaaagaccatctcatgaa-aagcaacc-atacagcaggccttgtcaccatt-tcagtttacag--g-aggaaaGAG-------------- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36303663 120 - 42659167 aagtgctaagtaaatgtG---TAAGATGACCACATGCCAGACCCACACTAGACATTCGGCACAGAGCCCCTCATGAA-GAACACCT-GCTGAGC------TATCACCACC-CTAGTTTCCAG--G-AGGGAGGAA-------------- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82827396 126 + 104043685 AACCGCTATT---ATGTTACCCAAGATCACTACAGGCCAATGACACTCTACACATGTCCTACAGATCAAAAAGTTAACAATCACCC-ATAAAGT-GGCCTTGTTATCACT-C--ATTTACAGATG-AGAACAGAG-------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46098687 90 - 69331447 aagtgctcggtaaatgtGAC----------------------------------------ACAGACCACC-CATGAA-AAGCAACCTGCAGAGCAGGCCTTGTCATCACC-TGAGTTTACAG--ACAGGAGAGAG-------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 76834 142 + 1056298 aagggctca----atGTGACTCACGATGGCCATGTGCCAGACACACGTTTGATGTTTAACTCAGACCATCCAATGAA-AAACCACCTGCAGAGCAGACCTTGTCAGCACCACCAGTGTACTC--CTAGGAAAGAAACGCTGAGGCTGAG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5726037 1192 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=681722.000000 s hg38.chr22_GL383582v2_alt 92669 52 + 162811 AAGACGTGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTACCTCAACTC s panTro5.chr22 28872557 52 + 37823149 AAGACGTGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTACCTCAACTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147151 52 + 50109623 AAGACGTGGAGCTTCGATCTGAACAATGTCCATTTGCTTCCTACCTCAACTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169892 52 + 4464012 AAGACGTGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTACCTCAACTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665850 52 - 115148730 AAGACATGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTACCTCAACCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280620 52 + 92844088 AAGACATGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTAATTCAACCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625629 52 - 96509753 AAGACATGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTAATTCAACCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117461 52 - 13098629 AAGACATGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTAATTCAACCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084244 52 - 4483953 AAGACATGGAGCTTAGATCTGAACAATATCCATTTGCTTCCTAACTCAACCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714440 52 + 33263144 AAGACGTGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTAATTCAACCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988804 52 - 14338769 AAGACATGGAGCTTAGATCTGAACAATATCCATTTGCTTCCTAATTCAACCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933283 52 + 1946073 AAGACGTGGAGCTTAGATCTGAACAATGTCCATTTGTTTCCTAATTCAACCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963757 52 - 2117846 AAGATGTGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTACCTCAACTC i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360125 52 - 1807191 AAGATGTGGAGCTTAGATCTGAACAATGTCCGTTTGTTTCCTACCTCAACTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40025 52 + 5963231 AAGACGTGGAGCTTAGATCTGAACAATGTCTATTTGCTTCCTACCTCAACTC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5727229 52 + 108171978 AAGACATGGAGCTTGGAGCTGAACAATGTCCATTTGTTTCCCACCTCAACTC i micMur3.chr7 I 1192 I 2024 s otoGar3.GL873526 36303783 52 - 42659167 AAGACACAGAGCTTGGATAGGAACAATGTCCATTTCCTTCCCACCTCAACTC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82827522 49 + 104043685 AAAACAAGGGACTGGAACATG---GATATCTGTTCCCTTCCTATTTAAACAC i mm10.chr15 C 0 C 0 s canFam3.chr10 46098777 52 - 69331447 AAACCACCAAGCTCGGATCTGAACAAGGTCCATTTCCTTCCTACCTCAACAT i canFam3.chr10 C 0 I 67 s dasNov3.JH570235 76976 49 + 1056298 AAGTGATGGCGCTCAGGTCTCAACAATG-CTGTTTTCTTCCTCCCTCAAC-- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=14776.000000 s hg38.chr22_GL383582v2_alt 92721 2 + 162811 CA s panTro5.chr22 28872609 2 + 37823149 CA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147203 2 + 50109623 CA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169944 2 + 4464012 CA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665902 2 - 115148730 CA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280672 2 + 92844088 CA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625681 2 - 96509753 CA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117513 2 - 13098629 CA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084296 2 - 4483953 CA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714492 2 + 33263144 CA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988856 2 - 14338769 CA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933335 2 + 1946073 CA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963809 2 - 2117846 CA i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360177 2 - 1807191 CA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40077 2 + 5963231 CA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36303835 2 - 42659167 AG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82827571 2 + 104043685 CA i mm10.chr15 C 0 I 302 s canFam3.chr10 46098896 1 - 69331447 C- i canFam3.chr10 I 67 C 0 e dasNov3.JH570235 77025 0 + 1056298 C e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=142677.000000 s hg38.chr22_GL383582v2_alt 92723 14 + 162811 CAACCTGGCAAGCA s panTro5.chr22 28872611 14 + 37823149 CAACCTGGCAAGCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147205 14 + 50109623 CAACCTGGCAAGCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169946 14 + 4464012 CAACCTGGCAAGCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665904 14 - 115148730 CAACCTGGCAAGCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280674 14 + 92844088 CAACCTGGCAAGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625683 14 - 96509753 CAACCTGGCAAGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117515 14 - 13098629 CAACCTGGCAAGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084298 14 - 4483953 CAACCTGGCAAGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714494 14 + 33263144 CAACCTGGCAAGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988858 14 - 14338769 CAACCTGGCAAGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933337 14 + 1946073 CAACCTGGCAAGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963811 14 - 2117846 CAACCTGGCAAGCA i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360179 14 - 1807191 CAACCTGGCAAGCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40079 14 + 5963231 CAACCTGGCAAGCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36303837 14 - 42659167 GAAATGAGAAAGCA i otoGar3.GL873526 C 0 I 37 s canFam3.chr10 46098897 14 - 69331447 AACTTTTGCATAAA i canFam3.chr10 C 0 C 0 e mm10.chr15 82827573 302 + 104043685 I e dasNov3.JH570235 77025 0 + 1056298 C e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=74070.000000 s hg38.chr22_GL383582v2_alt 92737 15 + 162811 GTGTGCAAACTC------CAC s panTro5.chr22 28872625 15 + 37823149 GTGCACAAACTC------CAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147219 15 + 50109623 GTGCACAAACTC------CAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169960 15 + 4464012 GTGCGCAAACTC------CAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665918 15 - 115148730 GTGCGCAAACTC------CAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280688 15 + 92844088 TTGCGCGAACTG------CAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625697 15 - 96509753 TTGCGCGAACTG------CAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117529 15 - 13098629 TTGCGCGAACTG------CAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084312 15 - 4483953 TTGCGCGAACTG------CAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714508 15 + 33263144 TTGCGAGAACTG------CAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988872 15 - 14338769 TTGCGCGAACTG------CAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933351 15 + 1946073 CTGCACGAACTG------CAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963825 14 - 2117846 GGGTGC-CACTC------CAC i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360193 14 - 1807191 GGGCGC-CACTC------CAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40093 14 + 5963231 GGGTGC-CACTC------CAC i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46098911 21 - 69331447 GAAAGCAAACTCACCCCTCAC i canFam3.chr10 C 0 I 22 e mm10.chr15 82827573 302 + 104043685 I e dasNov3.JH570235 77025 0 + 1056298 C e otoGar3.GL873526 36303851 37 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=822710.000000 s hg38.chr22_GL383582v2_alt 92752 100 + 162811 TATGATTAATTT------------------ATAACATTGCATCCAAAGGGGAAAG--ACTCTCAG-GCTGTATTAGGGACTTAGAgaaagatccttaaagac---agtttagttc--agtggtttt s panTro5.chr22 28872640 100 + 37823149 TATGATTAATTT------------------ATAACATTGCATCCAAAGGGGAAAG--ACTCTCAG-GCTGTATTAGGGACTTAGAGAAAGATCCTTAAAGAC---AGTTTGGTTc--agtggtttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147234 100 + 50109623 TATGATTAATTT------------------ATAACATTGCATCCAAAGGGGAAAG--ACTCTCAG-GCTGTATTAGGGACTTAGAGAAAGATCCTTAAAGAC---AGTTTGGTTc--agtggtttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3169975 99 + 4464012 TACGATTAATTT------------------ATAACATTGCATCCAAA-GGGAAAG--ACTCTCGG-GCTGTATTAGGGACTCAGAGAAAGATCCTTAAAGAC---AGTTTAGTTc--agtggtttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106665933 100 - 115148730 TATGATTAATTT------------------ATAATATTGCATCCAAAGAGGCAAG--ACCCTCAG-GCTGTATTAGGGACTTAGAgaaagatccttaaagac---actttcgttc--agtggtttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280703 100 + 92844088 GATGATTAATTT------------------ACAACATTGCATCCAAAGGGGAAAG--ACCCTCAG-GGTATGTTAGGGACTCAGAGAAAGATCCTTAAAGAC---AGTTTAGTTc--agtggtttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625712 100 - 96509753 GATGATTAATTT------------------ACAACATTGCATCCAAAGGGGAAAG--ACCCTCAG-GGTATGTTAGGGACTCAGAgaaagatccttaaagac---agtttagttc--agtggtttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117544 100 - 13098629 GATGATTAATTT------------------ACAACATTGCATCCAAAGGGGAAAG--ACCCtcag-ggtatgttagggactcagagaaagatccttaaagac---agtttagttc--agtggtttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084327 100 - 4483953 GATGATTAATTT------------------ACAACATTGCATCCAAAGGGGAAAG--ACCCtcag-ggtatgatagggactcagagaaagatccttaaagac---agtttagttc--agtggtttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714523 100 + 33263144 GATGATTAATTT------------------ATGACATTGCATCCAAAGGGGAAAG--ACCCtcag-ggtatgttagggactcagagaaagatccttaaagac---agtttagttc--agtggtttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988887 100 - 14338769 CATGATTAATTT------------------ACAACATTGCATCCAAAGGGGAAAG--GCCCtcag-ggtatgttagggactcagagaaagatccttaaagac---agtttagttc--agtggtttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933366 100 + 1946073 GATGATTAATTT------------------ACAACATTGCATCCAAAGGGGAAAG--ACCCTAAG-GGTGTGTTAGGGACTCAGAGAAAGATCCTTAAAGAC---AGTTTAGTTc--agtggtttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963839 102 - 2117846 TATGATTAA-TT------------------ACAACATTGCATCCAAAGGTGAAAGACACCCCCAG-GGTGTATCAGGTCCTTAGAGAAAGATCCTTAAAAAC---ACTTTAGTTcagag-gttttt i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360207 103 - 1807191 TATGATTAA-TT------------------ACAACACTGCATCCAAAGGAGAAAGACACCCCCAG-GGTGTATCAGGGCCTTAGAGAAAGATCCTTAAAGAC---ACTTTAGTTCCcagtgttttt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40107 101 + 5963231 TATGATTAA-TT------------------ACAACATTGCATCCAAAGGGGAAAGACACTCCCAG-GGTCTATTAGGGCCTTAGAgaaagatccttaaagac---actttagttc--agtggtttt i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36303888 89 - 42659167 TATGAACAGTTT------------------ACTATGTTGCATTTAAAGAAGAAAG--GCCCTCCT-AGAATATTAGGGGCCT-TAGAAGAACTTTTAA-------------GTTC--AGTTGTTTT i otoGar3.GL873526 I 37 M 672 s canFam3.chr10 46098954 117 - 69331447 GAGGCTTGCTTTTTTCAGTTAAAAAGCACAATGAATTTACGTACAGAGGAGAAAA--GCCCTGTGTGGTATACTCGGGCCTCAGGGAAAGGACATTAAAG-----AATTTAGTTc--agtgactct i canFam3.chr10 I 22 C 0 s dasNov3.JH570235 77025 53 + 1056298 ---------------------------------ACAGTGCCTCTCT--------G--TCCCTTGA-GG--------------------GGCTTCTCAAAGACCCTGCTCCGAATC--Ag------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82827573 302 + 104043685 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=542282.000000 s hg38.chr22_GL383582v2_alt 92852 56 + 162811 tgaagtgtggtcccctgg--aacagca-gcatcagcaacactcagggacttgtcagaaa s panTro5.chr22 28872740 56 + 37823149 tgaagtgtggtcccctgg--aacagca-gcatcagcaacactcagggacttgtcagaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147334 56 + 50109623 tgaagtgtggtcccctgg--aacagca-gcatcagcaacactcagggacttgtcagaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170074 56 + 4464012 tgaagtgtggtcccctgg--aacagca-gcatcagcaacactcagggactcgtcagaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666033 56 - 115148730 tgaagtgtggtcctctgg--aacagca-gcatcagcaacactcagggacttgtcacaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280803 56 + 92844088 tgaagtgtggtcctttgg--aacagca-gcatcagcaacactcagggacttgtcagaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625812 56 - 96509753 tgaagtgtggtcctttgg--aacagca-gcatcagcaacactcagggacttgtcagaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117644 56 - 13098629 tgaagtgtggtcctttgg--aacagca-gcatcagcaacactcagggacttgtcagaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084427 56 - 4483953 tgaagtgtggtcctttgg--aacagca-gcatcagcaacactcagggacttgtcagaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714623 56 + 33263144 tgaagtgtggtcctctgg--aacagca-gcatcagcaacactcagggacttgtcagaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13988987 56 - 14338769 tgaagtgtggtcctttgg--aacagca-gcatcagcaacactcagggacttgtcagaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933466 56 + 1946073 tgaagtgtggtcctctgg--aacagca-gcatcagcaacactcagggacttgtcagaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963941 56 - 2117846 tgagatgtggtcctctgaacagcagca-gctttagca--actcagggatttgtcagaaa i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360310 54 - 1807191 tgaggtgtggtcctctgg--aacagca-gcattagca--actcagggatttgtcagaaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40208 54 + 5963231 tgaggtgtggtcctctgg--aacagca-gcattagca--actcagggatttgtcagaaa i aotNan1.NW_018512383v1 C 0 I 13 s canFam3.chr10 46099071 55 - 69331447 caaagtgtaatcgt-tgg--accagca-acatcagcatcacctcggaacttggtagaaa i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 77078 46 + 1056298 -----------cccacag--atcaacctgtataagcaacacttgggagcttgtttgaaa i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82827573 302 + 104043685 I e otoGar3.GL873526 36303977 672 - 42659167 M e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=39255.000000 s hg38.chr22_GL383582v2_alt 92908 4 + 162811 tgca s panTro5.chr22 28872796 4 + 37823149 tgca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147390 4 + 50109623 tgca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170130 4 + 4464012 tgca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666089 4 - 115148730 tgca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280859 4 + 92844088 tgca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625868 4 - 96509753 tgca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117700 4 - 13098629 tgca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084483 4 - 4483953 tgca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714679 4 + 33263144 tgca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13989043 4 - 14338769 tgca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933522 4 + 1946073 tgca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1963997 4 - 2117846 tgca i calJac3.chrUn_GL286373 C 0 I 11 s cebCap1.NW_016107750v1 1360364 4 - 1807191 tgca i cebCap1.NW_016107750v1 C 0 I 8 s canFam3.chr10 46099126 4 - 69331447 tgga i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 77124 4 + 1056298 agca i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 40262 13 + 5963231 I e mm10.chr15 82827573 302 + 104043685 I e otoGar3.GL873526 36303977 672 - 42659167 M e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=36523.000000 s hg38.chr22_GL383582v2_alt 92912 6 + 162811 -gttttg s panTro5.chr22 28872800 6 + 37823149 -gttttg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147394 6 + 50109623 -gttttg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170134 6 + 4464012 -gttttg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666093 6 - 115148730 -gttttg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280863 6 + 92844088 -gttttg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625872 6 - 96509753 -gttttg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117704 6 - 13098629 -gttttg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084487 6 - 4483953 -gttttg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714683 6 + 33263144 -gttttg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13989047 6 - 14338769 -gttttg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933526 6 + 1946073 -gttttg i colAng1.NW_012115588v1 C 0 C 0 s canFam3.chr10 46099130 6 - 69331447 -aatttg i canFam3.chr10 C 0 I 7719 s dasNov3.JH570235 77128 6 + 1056298 aattct- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 40262 13 + 5963231 I e mm10.chr15 82827573 302 + 104043685 I e otoGar3.GL873526 36303977 672 - 42659167 M e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1360368 8 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964001 11 - 2117846 I a score=11268.000000 s hg38.chr22_GL383582v2_alt 92918 2 + 162811 tt s panTro5.chr22 28872806 2 + 37823149 tt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147400 2 + 50109623 tt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170140 2 + 4464012 tt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666099 2 - 115148730 tt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280869 2 + 92844088 tt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625878 2 - 96509753 tt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117710 2 - 13098629 tt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084493 2 - 4483953 tt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714689 2 + 33263144 tt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13989053 2 - 14338769 tt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933532 2 + 1946073 tt i colAng1.NW_012115588v1 C 0 C 0 s dasNov3.JH570235 77134 2 + 1056298 cc i dasNov3.JH570235 C 0 I 497 e aotNan1.NW_018512383v1 40262 13 + 5963231 I e mm10.chr15 82827573 302 + 104043685 I e canFam3.chr10 46099136 7719 - 69331447 I e otoGar3.GL873526 36303977 672 - 42659167 M e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1360368 8 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964001 11 - 2117846 I a score=1414660.000000 s hg38.chr22_GL383582v2_alt 92920 254 + 162811 tttt-gggttatttttgagacagagtctcgttctgtcacccaggctagagtgcagtggcacagtcttggctcactgcaacctccgactcccatgttcaagtgattctcgtgcctcagcttcccaagtagctaggattacaggcatgaaccaccacacctggcaactttttgtttttttactagagacggggtttcaacatgttggccaggctggtcttgaacttctgacctcaagtgatccacctgccttggctt s panTro5.chr22 28872808 254 + 37823149 tttttgggttatttttgagacagagtctcgttctgtcacccaggctggagtgcagtggcacagtcttggctcactgcaacctccgactgccatgttcaagtgattctcgtgcctcagcttcccaagtagctaggattacaggcatgaaccaccacacctggcaactttttgtttttt-actagagacggggtttcaacatgttggccaggctggtcttgaacttctgacctcaagtgatccacctgccttggctt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147402 253 + 50109623 tttt-gggttatttttgagacagagtctcgttctgtcacccaggctggagtgcagtggcacagtcttggctcactgcaacctccgactcccatgttcaagtgattctcgtgcctcaggttcccaagtagctaggattacaggcatgaaccaccacacctggcaactttttgtttttt-actagagacggggtttcaacatgttggccaggctggtcttgaacttctgacctcaagtgatccacctgccttggctt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170142 253 + 4464012 tttt-gggttatttttgagacagagtctcgttctgtcacccaggctggagtgcagtggcacagtcttggctcactgcaacctccgactcccatgttcaagtgattct-gtgcctcagcttcccaagtagctaggattacaggcatgaaccaccacacctggcaactttttgtttttttactagagacggggtttcaacacgttggccaggctggtcttgaacttctgacctcaagtgatccacctgccttggctt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666101 254 - 115148730 tttt-gggttatttttgagacagagtctcgttctgtcatccaggctggagcgcagtggcacagtcttggctcactgcaacctccgactcccatgttcaagtgattctcgtgcctcagcttcccaagtagctaggattacaggcatgaaccaccacacctggcaagtgtttgtatttttactagagacgaggtttcaacatgttggccagactggtcttgaacttctggcctcaagtgatccacctgtcttggctt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84280871 249 + 92844088 tttt-ggattatttttgag--agtgtctcgttctgttgcccaggctggagcgcagtggcacaaccttggctcactgcaacctccaactcccacgttcaagcgattcttgtgcctcagtttcccaagtagctgggattacaggcatgaaccaccacacctggcaaa---ttgtaatttcactagagacagggtttcaacatgttggccaggctggtcttgaacttcttgcctcaagtgatccacctgccttggcct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87625880 252 - 96509753 tttt-ggattatttttgag--agtgtctcgttctgtcgcccaggctggagcgcagtggcacaaccttggctcactgcaacctccaactcccacgttcaagcgattcttgtgcctcagtttcccaagtagctgggattacaggcatgaaccaccacacctggcaaatttttgtaatttcactagagacagggtttcaacatgttggccaggctggtcttgaacttcttgcctcaagtgatccacctgccttggcct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117712 252 - 13098629 tttt-ggattatttttgag--agtgtctcgttctgtcgcccaggctggagcgcagtggcacaaccttggctcactgcaacctccaactcccatgttcaagcgattcttgtgcctcagtttcccaagtagctgggattacaggcatgaaccaccacacctggcaaatttttgtaatttcactagagacagggtttcaacatgttggccaggctggtcttgaacctcttgcctcaagtgatccacctgccttggcct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084495 252 - 4483953 tttt-ggattatttttgag--agtgtctcgttctgtcgcccaggctggagcgcagtggcacaaccttggctcactgcaacctccaactcccacgttcaagcgattcttgtgcctcagtttcccaactagctgggattacaggcatgaaccaccacacctggcaaatttttgtaatttcactagagacagggttttaacatgttggccaggctggtcttgaacttcttgcctcaagtgatccacctgccttggcct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714691 252 + 33263144 tttt-ggattatttttgag--agtgtctcgttctgtcacccaggctggagcgcagtggcacaatcttggctcactgcaacctccaactcccatgttcaagcgattcttgtgcctcagtttcccaagtaactgggattacaggcatgaaccaccacacctggcaaatttttgtaatttcactagagacggggtttcaacatgttggccaggctggtcttgaacttcttgcctcaagtgatccacctgccttggcct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13989055 252 - 14338769 tttt-ggattatttttgag--agtgtctcgttctgtcgcccaggctggagcgcagtggcacaaccttggctcactgcaacctccaactcccacgttcaagcgattcttgtgcctcagtttcccaactagctgggattacaggcatgaaccaccacacctggcaaatttttgtaatttcactagagacagggttttaacatgttggccaggctggtcttgaacttcttgcctcaagtgatccacctgccttggcct i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933534 252 + 1946073 tttt-ggattatttttgag--agtgtctcgttctgtcgcccaggctggagcgcagtggcacaatcttggctcactgcaacctccaactcccacgttcaagtgattcttgtgccttagtttcccaagtagctgggattacaggcatgaaccaccacacctggcaaatttgtgtaatttcactagagacggggtttcaacatgttggccaggctggtcttgaacttcttgcctcaagtgatccacctgccttggcct i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512383v1 40262 13 + 5963231 I e mm10.chr15 82827573 302 + 104043685 I e dasNov3.JH570235 77136 497 + 1056298 I e canFam3.chr10 46099136 7719 - 69331447 I e otoGar3.GL873526 36303977 672 - 42659167 M e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1360368 8 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964001 11 - 2117846 I a score=12900.000000 s hg38.chr22_GL383582v2_alt 93174 2 + 162811 cc s panTro5.chr22 28873062 2 + 37823149 cc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147655 2 + 50109623 cc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170395 2 + 4464012 cc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666355 2 - 115148730 cc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84281120 2 + 92844088 cc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87626132 2 - 96509753 cc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117964 2 - 13098629 cg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084747 2 - 4483953 cc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714943 2 + 33263144 cc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13989307 2 - 14338769 cc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933786 2 + 1946073 cc i colAng1.NW_012115588v1 C 0 C 0 s cebCap1.NW_016107750v1 1360376 2 - 1807191 cc i cebCap1.NW_016107750v1 I 8 C 0 e aotNan1.NW_018512383v1 40262 13 + 5963231 I e mm10.chr15 82827573 302 + 104043685 I e dasNov3.JH570235 77136 497 + 1056298 I e canFam3.chr10 46099136 7719 - 69331447 I e otoGar3.GL873526 36303977 672 - 42659167 M e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964001 11 - 2117846 I a score=25662.000000 s hg38.chr22_GL383582v2_alt 93176 3 + 162811 caa s panTro5.chr22 28873064 3 + 37823149 caa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147657 3 + 50109623 caa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170397 3 + 4464012 caa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666357 3 - 115148730 caa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84281122 3 + 92844088 caa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87626134 3 - 96509753 caa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117966 3 - 13098629 caa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084749 3 - 4483953 caa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714945 3 + 33263144 caa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13989309 3 - 14338769 caa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933788 3 + 1946073 caa i colAng1.NW_012115588v1 C 0 C 0 s cebCap1.NW_016107750v1 1360378 3 - 1807191 caa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40275 3 + 5963231 caa i aotNan1.NW_018512383v1 I 13 C 0 e mm10.chr15 82827573 302 + 104043685 I e dasNov3.JH570235 77136 497 + 1056298 I e canFam3.chr10 46099136 7719 - 69331447 I e otoGar3.GL873526 36303977 672 - 42659167 M e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964001 11 - 2117846 I a score=20055.000000 s hg38.chr22_GL383582v2_alt 93179 2 + 162811 ag s panTro5.chr22 28873067 2 + 37823149 ag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147660 2 + 50109623 ag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170400 2 + 4464012 ag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666360 2 - 115148730 ag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84281125 2 + 92844088 ag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87626137 2 - 96509753 ag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117969 2 - 13098629 ag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084752 2 - 4483953 ag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714948 2 + 33263144 ag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13989312 2 - 14338769 ag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933791 2 + 1946073 ag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964012 2 - 2117846 ag i calJac3.chrUn_GL286373 I 11 C 0 s cebCap1.NW_016107750v1 1360381 2 - 1807191 ag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40278 2 + 5963231 ag i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82827573 302 + 104043685 I e dasNov3.JH570235 77136 497 + 1056298 I e canFam3.chr10 46099136 7719 - 69331447 I e otoGar3.GL873526 36303977 672 - 42659167 M e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=306037.000000 s hg38.chr22_GL383582v2_alt 93181 35 + 162811 tgctgggattacaggcgtgagccactgtgcttggc s panTro5.chr22 28873069 35 + 37823149 cgctgggattacaggcgtgagccactgtgcttggc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147662 35 + 50109623 cgctgggattacaggcgtgagccactgtgcttggc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170402 35 + 4464012 tgctgggattacaggcgtgagccactgtgcctggc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666362 35 - 115148730 tgctgggattacaggcgtgagccactgcgcttggc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84281127 35 + 92844088 tgctgggattataggcatgagccaccacacctggc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87626139 35 - 96509753 tgctgggattacaggcatgagccaccacacccggc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7117971 35 - 13098629 tgctgggattacaggcatgagccaccacacctggc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084754 35 - 4483953 tgctgggattacaggcatgagccaccacacctggc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714950 35 + 33263144 tgctgggattacaggcgtgagccaccacacctggc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13989314 35 - 14338769 tgctgggattacaggcatgagccaccacacctggc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933793 35 + 1946073 tgctgggattacaggcatgagccaccacacttggc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964014 35 - 2117846 tgttgggattacaggcgtgagccagcatacttggc i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360383 35 - 1807191 tgctgggattataagcgtgagccaccatacttggc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40280 35 + 5963231 tgccgggattacaggcatgagccaccatacttggc i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82827875 34 + 104043685 TGCAGGGATTATAAGGATTA-TAAGTATGCTTCAC i mm10.chr15 I 302 C 0 e dasNov3.JH570235 77136 497 + 1056298 I e canFam3.chr10 46099136 7719 - 69331447 I e otoGar3.GL873526 36303977 672 - 42659167 M e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=790258.000000 s hg38.chr22_GL383582v2_alt 93216 79 + 162811 agaaatgcacgcttttgagccc--------cacctaaatctgtgttgtgag---aagtc----ctccaggctattctgatgtacaatgcagttt s panTro5.chr22 28873104 79 + 37823149 agaaatgcacacttttgagccc--------cacctaaatctgtgttgtgag---aagtc----ctccaggctattctgatgtacaatgcagttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147697 79 + 50109623 agaaatgcacacttttgagccc--------cacctaaatctgtgttgtgag---aagtc----ctccaggctattctgatgtacaatgcagttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170437 79 + 4464012 agaaaggcacacttttgagccc--------cacgtaaatctgtgttgtgag---aagtc----ctccaggctattctgatgtacaatgcagttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666397 79 - 115148730 agaaatgcacacttttgagccc--------caactaaatctgtgttgtgag---aagtc----ctccaggctattctgatgcacaatgcagttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84281162 79 + 92844088 agaaatgcatacttttgagccc--------cacctaaatccgtgttgtgag---aagtc----ctccaggctattctgatgcacaatgcagttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87626174 79 - 96509753 agaaatgcatacttttaagccc--------cacctaaatccgtgttgtgag---aagtc----ctccaggctattctgatgcacaatgcagttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7118006 79 - 13098629 agaaatgcatacttttgagccc--------cacctaaatccgtgttgtgag---aagtc----ctccaggctattctgatgcacaatgcagttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084789 79 - 4483953 agaaatgcatacttttgagccc--------cacctaaatccgtgttgtgag---aagtc----ctccaggctattctgatgcacaatgcagttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24714985 79 + 33263144 agaaatgcacacttttgagccc--------cacctaaatccgtgttgtgag---aagtc----ctccaggctattctgacgcacaatgcagttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13989349 79 - 14338769 agaaatgcatacttttgagccc--------cacctaaatccgtgttgtgag---aagtc----ctccaggctattctgatgcacaatgcagttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933828 79 + 1946073 agaaatgcacacttttgagccc--------cacctaaatctgtgttgtgag---aagtc----ttctaggctattctgatgcacaatgcagttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964049 79 - 2117846 agaaatgcacacttttgagccc--------cacctaaatctgtgttgtgag---aagtc----ctccaggctattcaggtgtacaatgcagttt i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360418 79 - 1807191 agaaatgcacacttttgagccc--------cacctaaatctgtgttgtgag---aagtc----ctccaggctattcagatgcacaatgcagttt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40315 79 + 5963231 agaaatgcacacttttgagccc--------cacctaaatctgtgttgtgag---aagtc----ctccagactattcagatgcacaatgcagttt i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82827909 92 + 104043685 ACAACT--ATAGTGTGGAGACCAGAAACAGCACGAAGAGCTAAACAGGAAGGGCAAATCCTCACTCTAAGTCATTGTAATACACAATGCAGATT i mm10.chr15 C 0 C 0 s canFam3.chr10 46106855 78 - 69331447 agaagTGCAAGTTCTCAAAGCC--------CCTCTcaatctgtgccgtaac---aagt-----gtctaggcaattctgatgcatgacacaattt i canFam3.chr10 I 7719 C 0 e dasNov3.JH570235 77136 497 + 1056298 I e otoGar3.GL873526 36303977 672 - 42659167 M e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=778517.000000 s hg38.chr22_GL383582v2_alt 93295 75 + 162811 gaggaccactggtct---aa-ttcaactccccaacttttcagatgcggaaaa-aagaaacccagagagacacaatgactg s panTro5.chr22 28873183 75 + 37823149 gaggaccactgGtct---ca-ttcaactccccaacttttcagacgcggaaaa-aagaaacccagagagacacaatgactg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147776 75 + 50109623 gaggaccactgGtct---ca-ttcaactccccaacttttcagacgcggaaaa-aagaaacccagagagacacaatgactg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170516 75 + 4464012 gaggaccactgGtct---aa-ttcaactccccaacttttcagatgcggaaaa-aagaaacccagagagacacaatgactG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666476 75 - 115148730 gaggaccactggtct---aa-ttcaactccccaacttttcagatgcggaaaa-aagaaacccagagagacacaatgactg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84281241 75 + 92844088 gaggaccactgGtct---aa-ttcaactccccaacttttcagatgcggaaaa-aagaaacccagagagatacaataacAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87626253 75 - 96509753 gaggaccactggtct---aa-ttcaactccccaacttttcagatgcggaaaa-aagaaacccagagagatacaataacAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7118085 75 - 13098629 gaggaccactggtct---aa-ttcaactccccaacttttcagatgcggaaaa-aagaaacccagagagatacaataacAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084868 75 - 4483953 gaggaccactggtct---aa-ttcaactccccaacttttcagatgcggaaaa-aagaaacccagagagatacaataacAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24715064 75 + 33263144 gaagaccactggtct---aa-ttcaactccccaacttttcagatgtggaaaa-aagaaacccagagagatacaatgacAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13989428 75 - 14338769 gaggaccactggtct---aa-ttcaactccccaacttttcagatgcggaaaa-aagaaacccagagagatacaataacAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933907 75 + 1946073 gaggaccactgatct---aa-ttcaactccccaacttttcagatgcggaaaa-aagaaacccagagagatacaatgactG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964128 75 - 2117846 cgggaccactgGTGt---aa-ttcaactccccagcttttcagatgcggaaaa-aagaaacccaaagagacacaatgactg i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360497 75 - 1807191 caggaccactgGtct---aa-ttcaactccccagcttttcacatgtggaaaa-aagaaacccaaagagacacaatgactg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40394 73 + 5963231 caggaccactggtct---aa-ttcaactccctagcttttcagattcggaaaa-aaaaaacccaaagagacacaatgac-- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36304667 76 - 42659167 GAAAACCACTGGTCTAAAaa-ttcaactccccagctttttagatgcaggaaa-gagctg--cagagagatgtaatgactg i otoGar3.GL873526 M 672 C 0 s mm10.chr15 82828001 57 + 104043685 CAGAACCA------T---TA-GTTAACTCCTTAACTT-----------AAAA-CACAGACCCATGAATTTA-AAGGACTG i mm10.chr15 C 0 C 0 s canFam3.chr10 46106933 75 - 69331447 gagaaccattgGTTC---AATTTCAACTCTATAATTTTTTAGGTGAGAAAAACAAAAGACCCA--GAGATGCAATAATTG i canFam3.chr10 C 0 I 30 e dasNov3.JH570235 77136 497 + 1056298 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=513094.000000 s hg38.chr22_GL383582v2_alt 93370 63 + 162811 gg-tgagctaggattactggattactggtttcctgagagccattcagtg---------------ttctgtct--cctACAG s panTro5.chr22 28873258 63 + 37823149 gg-tgagctaggattactggattactggtttcctgagagccattcagtg---------------ttctgtct--cctACAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147851 63 + 50109623 gg-tgagctaggattactggattactggtttcctgagagccattcagtg---------------ttctgtct--cctACAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170591 63 + 4464012 GG-TGAGCTAGGATTACTGGATTACTGGTTTCCTGAGAGCCATTCAGTG---------------TTCTGTCT--CCTACAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666551 63 - 115148730 gc-tgagctaggattactggattactggtttcctgagagccattcagtg---------------ttctgtct--cctACAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84281316 55 + 92844088 AC-TGAGCTA--------GGATTACTGGTTTCCTGAGAGCCATTTAGTG---------------TTCTGTCT--CCTATAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87626328 55 - 96509753 AC-TGAGCTA--------GGATTACTGGTTTCCTGAGAGCCATTTAGTG---------------TTCTGTCT--CCTATAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7118160 55 - 13098629 AC-TGAGCTA--------GGATTACTGGTTTCCTGAGAGCCATTTAGTG---------------TTCTGTCT--CCTATAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084943 55 - 4483953 AC-TGAGCTA--------GGATTACTGGTTTCCTGAGAGCCATTTAGTG---------------TTCTGTCT--CCTATAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24715139 55 + 33263144 AC-TGAGCTA--------GGATTACTGGTTTCCTGAGAGCCATTTAGTG---------------TTCTGTCT--CCTATAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13989503 55 - 14338769 AC-TGAGCTA--------GGATTACTGGTTTCCTGAAAGCCATTTAGTG---------------TTCTGTCT--CCTATAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 933982 55 + 1946073 AC-TGAACTA--------GGATTACTGGTTTCCTGAGAGCCATTTAGTG---------------TTCTGCCT--CCTACAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964203 79 - 2117846 acttgagctaggattactggattattggtttcctgagagccattcagtgctctctccactATATTTCTGTCT--CCTATAG i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360572 78 - 1807191 ac-tgagctaggattactggattattggtttcctgagagccattcagtgctctctccactATATTTCTGTCT--CCTATAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40467 76 + 5963231 ---tgagctaggattactggattattggtttcctgagagccattcagttctctctccactatatttctgtct--ccTATAG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36304743 69 - 42659167 gt-tgagcta--------ggattccaggtttcctgagagccatttagtg-ctttctcACTATATTTCCAACT--CCTACAG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82828058 66 + 104043685 GC-T--------------AGAATTTATGTTTTCTGAGAGTTATTTAGTGTTTTCTCTACTAGACTTCTGTATACCCTATAC i mm10.chr15 C 0 C 0 e dasNov3.JH570235 77136 497 + 1056298 I e canFam3.chr10 46107008 30 - 69331447 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=273063.000000 s hg38.chr22_GL383582v2_alt 93433 31 + 162811 AGCAAT---C---AGATCTTGGG--------------------------ATA-TGGTAGGCAGa s panTro5.chr22 28873321 31 + 37823149 AGCAAT---C---AGATCTTGGG--------------------------ATA-TGGTAGGCAGa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147914 31 + 50109623 AGCAAT---C---AGATCTTGGG--------------------------ATA-TGGTAGGCAGa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170654 31 + 4464012 AGCAAT---C---AGATCTTGGG--------------------------ATA-TGGTAGGcaga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666614 32 - 115148730 AGCAAT---C---AGATCTTGTG--------------------------ATATTGGTAGGCAGa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84281371 31 + 92844088 AGCAAT---C---AGATCTTGGG--------------------------ATA-CGGTAGGTAGa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87626383 31 - 96509753 AGCAAT---C---AGATCTTGGG--------------------------ATA-CGGTAGGTAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7118215 31 - 13098629 AGCAAT---C---AGATCTTGGG--------------------------ATA-CGGTAGGTAGa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4084998 31 - 4483953 AGCAAT---C---AGATCTTGGG--------------------------ATA-CGGTAGGTAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24715194 31 + 33263144 AGCAAT---C---AGATCTTGGG--------------------------ATA-CGGTAGGTAga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13989558 31 - 14338769 AGCAAT---C---AGATCTTGGG--------------------------ATA-CGGTAGGTAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 934037 31 + 1946073 AGCAAT---C---AGATCTTGGG--------------------------ATA-TGGTAGGTAGa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964282 31 - 2117846 AGCAGT---C---AGATCTTGGG--------------------------GTA-TGGTATGAAGa i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360650 31 - 1807191 AGCAAT---C---AGATCTTGGG--------------------------GTA-TGGTAGGAAGa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40543 31 + 5963231 AGCAAT---C---AGATCTTGGG--------------------------GTA-TGGTAGGAAGa i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36304812 34 - 42659167 AACAATTTAT---AGGTCATGGA--------------------------Ttg-tggtaggcaga i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82828124 60 + 104043685 AGCAAA---CTAAAGATTATGGGTGTGAAAGCAGAACTGAGGCCTCCAATGA-TGTTCATCTGA i mm10.chr15 C 0 C 0 s dasNov3.JH570235 77633 31 + 1056298 agtggt---t---gagcactggg--------------------------ttc-ccacatacaaa i dasNov3.JH570235 I 497 C 0 e canFam3.chr10 46107008 30 - 69331447 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=2358236.000000 s hg38.chr22_GL383582v2_alt 93464 244 + 162811 atc-----------------------------ccaag---aacctgtgatcttatatacaaaatcaactttgtggatgaga-ttaagtcaaggaccttgagatgggaagaatatgctaggttat---ccagg--tgggcccaatctaatcacacaggcccataaaagcaaacgattcccccccagagggagtt-acagttgtcagcttcagggagacctgatgatttgccagcagggtc--ataggtg-caatgctgctggcctggaagacg-gga----gaaggga--------cagg-------- s panTro5.chr22 28873352 243 + 37823149 atc-----------------------------ccgag---aacctgtgatcttatatacaaaatcaactttgtggatgaga-ttaagtcaaggaccttgagatgggaagaatatgctaggttat---ccagg--tgggcccaatctaatcacacaggtccataaaagcaaacgattcccccc-agagggagtt-acagttgtcagcttcagggagacctgatgatttgccagcagggtc--ataggtg-caatgctgctggcctggaagatg-gga----gaaggga--------cagg-------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41147945 243 + 50109623 atc-----------------------------ccgag---aacctgtgatcttatatacaaaatcaactttgtggatgaga-ttaagtcaaggaccttgagatgggaagaatatgctaggttat---ccagg--tgggcccaatctaatcacacaggtccataaaagcaaacgattcccccc-agagggagtt-acagttgtcaacttcagggagacctgatgatttgccagcagggtc--ataggtg-caatgctgctggcctggaagatg-gga----gaaggga--------cagg-------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170685 242 + 4464012 at------------------------------ccgag---aacctgtgatcttatatacaaaatcaactttatggatgaga-ttaagtcaaggaccttgagatgggaagaatatgctaggttat---ccagg--tgggcccaatctaatcacacaggtccataaaagcaaacgactcccccc-agagggagtt-acagttgtcagcttcagggagacctgatgatttgccagcagggtc--ataggtg-caatgctgctggcctcgaagatg-gga----gaaggga--------cagg-------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666646 242 - 115148730 atc-----------------------------ccaag---aacctgtgatcttatatacaaaatcaactttgtggatgaga-ttaagtcaaggaccttgagatgggaagaatatgctaggttat---ccagg--tgggcccaatctaatcacacaggtccataaaagcaaatgactcccct--agagggagtt-agagttgtcagcttcagggagacctgatgatttggcagcaaggta--ataggtg-caatgctgctggcctcgaagatg-gga----gaaggga--------cagg-------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84281402 240 + 92844088 atc-----------------------------ctgag---aacctgtgatcttatatacaaaatgaactttgcggatgaga-tt-----aaggaccttgagatgggaagaatatgctaggttatatgctagg--tggg-ccaatctaatcacacaggtccataaaagcaaatgactcccccc-agagggagtt-aaagttgtcagcttcagggagatctgatgatttggcagcagggtc--ataggtg-caatgctgctggccttgaagatg-gga----gaagggg--------cAGG-------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87626414 240 - 96509753 ATc-----------------------------ctgag---aacctgtgatcttatatacaaaatgaactttgcggatgaga-tt-----aaggaccttgagatgggaagaatatgctaggttatatgctagg--tggg-ccaatctaatcacacaggtccataaaagcaaatgactcccccc-agagggagtt-aaagttgtcagcttcagggagatctgatgatttggcagcagggtc--ataggtg-caatgctgctggccttgaagatg-gga----gaagggg--------cAGG-------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7118246 240 - 13098629 atc-----------------------------ctgag---aacctgtgatcctatatacaaaatgaactttgcggatgaga-tt-----aaggaccttgagatgggaagaatatgctaggttatatgctagg--tggg-ccaatctaatcacacaggtccataaaagcaaatgactcccccc-agagggagtt-aaagttgtcagcttcagggagatctgatgatttggcagcagggtc--ataggtg-caatgctgctggccttgaagatg-gga----gaagggg--------cAGG-------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4085029 240 - 4483953 ATc-----------------------------ctgag---aatctgtgatcttacatacaaaatgaactttgcggatgaga-tt-----aaggaccttgagatgggaagaatatgctaggttatatgctagg--tggg-ccaatctaatcacacaggtccataaaagcaaatgactcccccc-agagggagtt-aaagttgtcagcttcagggagacctgatgatttggcagcagggtc--atgggtg-caatgctgctggccttgaagatg-tga----gaagggg--------cAGG-------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24715225 240 + 33263144 atc-----------------------------ctgag---aatctgtgatcttatatacaaaatgaactttgcagatgaga-tt-----aaggaccttgagatgggaagaatatgctaggttatatgctagg--tggg-ccaatctaatcacacaggtccataaaagcaaatgactccccct-agagggagtt-aaagttgtcagcttcagggagacctgatgatttggcagcagggtc--ataggtg-caatgctgccggccttgaagatg-gga----gaagggg--------cAGG-------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13989589 240 - 14338769 ATc-----------------------------ctgag---aacctgtgatcttacatacaaaatgaactttgcggatgaga-tt-----aaggaccttgagatgggaagaatatgctaggttatatgctagg--tggg-ccaatctaatcacacaggtccataaaagcaaatgactcccccc-agagggagtt-aaagttgtcagcttcagggagacctgatgatttggcagcagggtc--ataggtg-caatgctgctggccttgaagatg-gga----gaagggg--------cAGG-------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 934068 245 + 1946073 atc-----------------------------ccgag---aacctgtgatcttatatacaaaatgaactttgcggatgaga-tt-----aaggaccttgagatgggaagaatatgctaggttatatgctagg--tgggcccagtctaatcacacaggtccataaaagcaaatgactctcccc-agagggagtt-aaagttgtcagcttcagggagacctgatgatttggcagcagggtc--ataggtg-caatgctgctggccttgaagatg-ggagaaggaagggg--------cagg-------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964313 244 - 2117846 atc-----------------------------ctgag---aacctgtgaccttatatacaaaatgaactttgtggatgagatttaagtcaaggaccttgagataagaagaatatgctaggttat---ccagg--tggggccaatttaatcacataggtccataaaagcaaactactttgccc-aga-ggagttaagagttgtcagcttcagggagactggatgatttgccagtgcggtc--ataggtg-caatgctacttgcttcgaagacg-gaa----gaagggg--------cagg-------- i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360681 248 - 1807191 atc-----------------------------ccgag---aacctgtgaccttatatacaaaatgaactttgtggatgaga-ttaagtcgaggatcttgagatgggaagaatatgctaggttat---ccagg--tggggccaatctaatcacataggtccataaaagcaaactacttccccc-aga-ggagtt-agagttgtcagcttcagggagaactgatgatttgccagcacgctc--atacgtg-caacgctactggcttcgaagatg-gaa----gaaggggcag--gaccagg-------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40574 242 + 5963231 atc-----------------------------ccgag---aacctgtgaccttatatacaaaatgaactttgtggatgaga-ttaagtcaaggaccttgagatgggaagaatatgctaggttat---ccagg--tggggccaatctaatcacataggtccataaaagcaaactacttccccc-aga-ggagtt-agagttgtcagcttcagggagacctgatgatttgccagcgaggtc--ataggtg-caatgctactggcctcgaagatg-gaa----gaagggg--------cagg-------- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36304846 269 - 42659167 attatggcttcccaaagatgtccattccaatgcccag---aacctgtgcccttaaaggcaaaataaac--tacagatgaga-ttaagttcaagaccttaagatgggaagaacatgtgagactat---gcagg--taggctcaatctaatcacatgggtccacaaaagtagg-aacctctacc-agagggattc-agcgtcactggctttaggaagacatgatgg--cgggagtgagctaggagagatg-caatgctgccagcttcaaagatg-aaa----gaaggac--------tggt-------- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82828184 201 + 104043685 ATT-----------------------------CCCAG---TGTCAGTGATTTTTAATGC--------TTTTGTAGAGAAGT--------AAG--TCTCAAGGCGGGGACAGTGCACTA-ATCAT---CTGGGTATGGATCTATTTTCAACACATTGAT-----AAAACAAA--GATCCTCTC-AGAGTGGGGC-CGAGATGTAGGCTTCAGAGAGA--TGTAGAAATGGGAGCAGGCTC--ATGTG---------------------agatg-gaa----gaaagggcct-----caag-------- i mm10.chr15 C 0 I 11 s canFam3.chr10 46107038 241 - 69331447 aac-----------------------------cccag---aacccgccccctcacttggtaaagggactgtgcagatatga-ctaagtcaaggacct-gcgacggggagagtatgctggattat---ccagg--tggcccccatctagtcacatgagcccatgcaagcaaagaaacccttcc-agaggtagtg-ggagttgagggctctagggagatgtgatga--tgggagcagggtc--agagatgccaacactgctggttttgaagatg-gaa----gaagggg--------ccac-------- i canFam3.chr10 I 30 I 2 s dasNov3.JH570235 77664 241 + 1056298 gtc-----------------------------ccaggttcaatctcgggtccccaaaacaaaataaaa--cacaaaacaaa-at-----aaaaaccttgagatggg-agcttattccagattat---ctggg--tggacccaatcaaatcatatgcgttcataaaagcaacaagcctctccc------------agagtggtcag----aaggagatgtgatgagt--gaagcaggatcagaaagatg-taacattgctggctttgaatctgagaa----gaaggggtcatgagtcaaggaatatgg i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=8071.000000 s hg38.chr22_GL383582v2_alt 93708 1 + 162811 g s panTro5.chr22 28873595 1 + 37823149 g i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148188 1 + 50109623 g i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170927 1 + 4464012 g i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666888 1 - 115148730 g i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84281642 1 + 92844088 G i rheMac8.chr10 C 0 I 606 s macFas5.chr10 87626654 1 - 96509753 G i macFas5.chr10 C 0 I 9 s macNem1.NW_012012688v1 7118486 1 - 13098629 G i macNem1.NW_012012688v1 C 0 I 11 s cerAty1.NW_011999588v1 4085269 1 - 4483953 G i cerAty1.NW_011999588v1 C 0 I 11 s manLeu1.NW_012102031v1 13989829 1 - 14338769 G i manLeu1.NW_012102031v1 C 0 I 7400 s colAng1.NW_012115588v1 934313 1 + 1946073 g i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964557 1 - 2117846 a i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360929 1 - 1807191 a i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40816 1 + 5963231 a i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36305115 1 - 42659167 g i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46107281 1 - 69331447 g i canFam3.chr10 I 2 I 10 s dasNov3.JH570235 77905 1 + 1056298 g i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82828385 11 + 104043685 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C e chlSab2.chr19 24715465 0 + 33263144 C a score=713649.000000 s hg38.chr22_GL383582v2_alt 93709 200 + 162811 cggcag-ctgcagaa-tttttaaaaggcaaggaagca---tgttctcccct-aagactctggact-tttccaaagcccagcccacacctcaattccag--cccagtaagacacctgtgttggactttgaacctacagaactgtaagc----agaactgtat-----------------------------------------taacaagtttgtg---------------------gtaaggtgttatgacaatg-----atagaaaactaatacaCGGG s panTro5.chr22 28873596 200 + 37823149 cagcag-ctgtagaa-tttttaaaaggcaaggaagca---tgttctcccct-aagcctctggaaa-agatcaaagcccagcccacacctcaattctag--cccagtaagacacctgtgttggactttgaacctacagaactgtaagc----agaactttat-----------------------------------------taacaagtttgtg---------------------gtaatgtgttatgacaatg-----atagaaaactaatacaCGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148189 200 + 50109623 cagcag-ctgtagaa-tttttaaaaggcaaggaagca---tgttctcccct-aagcctctggaaa-agatcaaagcccagcccacacctcaattctag--cccagtaagacacctgtgttggactctgaacctacagaactgtaagc----agaactgtat-----------------------------------------taacaagtttgtg---------------------gtaatgtgttatgacaatg-----atagaaaactaatacaCGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3170928 200 + 4464012 cggcag-ctgtagaa-tttttaaaaggcaaggaagca---tgctctcccct-aagcctctggaaa-agatcacagcccagcccacacctcaattctag--cccagtaagacacctgtgttggactttgaacctacagaactgtaagc----agaactgtat-----------------------------------------taacaagtttgtg---------------------gtaatgtgttatgacaatg-----atagaaaactaatacaCGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106666889 195 - 115148730 cggcag-ctatagaa-tttttaaaaggcaaggaagca---cgttctcccct-aagcctctggaaa-agatcacagcccagcccacaccttaattccag--cccagtaagacacctgtgttggactttgaaactacagaactgtaagc----agaactgtat-----------------------------------------taacaagtttgtg---------------------gtaatg-----tgacaatg-----atagaaaactaatacaCGGG i nomLeu3.chr7b C 0 C 0 s colAng1.NW_012115588v1 934314 199 + 1946073 cagcag-ctgcagaa-tttttaaaaggcaaggaagca---tgttcttccct-aagcctctggaaa-agatcacagcccagtccacaccttaattccag--cctaataagacacctgtgttggactttgaacctacagaactgtaagc----agaactgtg------------------------------------------taacaagtttgtg---------------------gtaatgtattatggcaatg-----atagaaaactaatacaCGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964558 202 - 2117846 tggcag-ctgtagaattttttaaaaggcaaggaagca---tgttcttccct-aagactccagaaa-agatcacagcccagcccacatcttaattctagtgcccactaagacacttgtgttgaactttaaacctgcagaactgtaagc----agaactgta------------------------------------------taacaagtttgtg---------------------gtaatgtgttatagcaatg-----atagaaaactaatacaCGGG i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1360930 201 - 1807191 cagtag-ctgtagaa-tttttaaaaggcaaggaagca---tgttcttccct-aagcctccagaaa-agatcacagcccagcccacaccttaattctagcacccactaagacacttgtgttggactttaaacctgcagaattgtaagc----agaactgta------------------------------------------taacaagtttgtg---------------------gtaatgtgttatagcaatg-----atagaaaactaataTGCGGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 40817 201 + 5963231 tggcag-ctgtagaa-tttttaaaaggcaaggaagca---tgttcttccct-aagcctccagaaa-agatcacagcccagcccacatcttaattctagcacccactaagacacttgtgttggactttaaacctgcagaattgtaagc----agaactgtt------------------------------------------taacaagtttgtg---------------------gtaatgtgttatagcagtg-----ataaaaaactaatacaCGGG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36305116 157 - 42659167 ------------------------agccaagaaagca---cactcttccctaaagcctcgagaaa-ggagcacagctaagcccgcactttaa-cctag--cccagtgagacacctgtgttggacttctaaccttcagaactattaag----aca-------------------------------------------------aacaagtttgtg---------------------gtgatg------------------atagacaactaatatgtggg i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82828396 234 + 104043685 aggtag-ttatag---ctcaaaaaaggtgagcaaaaa------tcgtctct-acgcttccagaaagagggcagagcacagataacaaccaaattcca---ccaagtggggctc--acattggacttgtaaccta-aaaactgtaaga----gaaACCCTGTCTcaaaaaaacaaacaaacaaaaaaacaaaaaCCTGTAATGCAACAGGCATGTG-------------------------TATGTCATGGCAAGGAAATCATGGCAAGGCATTACTGAGC i mm10.chr15 I 11 C 0 s canFam3.chr10 46107292 205 - 69331447 gggcagcctttagaa-gttggatgagagaagaaaa-------ttattcctg-gagcctccagaaa-gcaaatcagccctgctgacacctcagtctgag--cccagaag---acctgtgatagccccaagacctacagaactacaagg-------------------------------------------------------taacaagtttgtgctttaaagccaccgagtttgtgtaatgtgttacagcagtg-----ataatagaccagtGGGGGGG i canFam3.chr10 I 10 I 1 s dasNov3.JH570235 77906 203 + 1056298 ---cagcctccagaa-gatggaaaatgcaaaaaaaaaaaggatttttcctt-a-------gagaa-agaactcagccctgccaacaccttgattttag--cccagtaag--acctgtgtcagattcctaacctagaaaacagtaagacaataaatttgtgttttaagc----------------------------------cactgagtttgtg---------------------gtaatttgttacagcagta-----atagaaaacaaacacaTGGG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e chlSab2.chr19 24715465 0 + 33263144 C e cerAty1.NW_011999588v1 4085270 11 - 4483953 I e macNem1.NW_012012688v1 7118487 11 - 13098629 I e macFas5.chr10 87626655 9 - 96509753 I e rheMac8.chr10 84281643 606 + 92844088 I a score=8940.000000 s hg38.chr22_GL383582v2_alt 93909 3 + 162811 GAT s panTro5.chr22 28873796 3 + 37823149 GAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148389 3 + 50109623 GAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171128 3 + 4464012 GAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667084 3 - 115148730 GAT i nomLeu3.chr7b C 0 C 0 s chlSab2.chr19 24715465 3 + 33263144 GAT i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 934513 3 + 1946073 GAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964760 3 - 2117846 GAT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1361131 3 - 1807191 GGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 41018 3 + 5963231 GAT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36305273 3 - 42659167 gat i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82828630 3 + 104043685 AGC i mm10.chr15 C 0 C 0 s canFam3.chr10 46107498 2 - 69331447 GG- i canFam3.chr10 I 1 I 35 s dasNov3.JH570235 78109 3 + 1056298 CAT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e cerAty1.NW_011999588v1 4085270 11 - 4483953 I e macNem1.NW_012012688v1 7118487 11 - 13098629 I e macFas5.chr10 87626655 9 - 96509753 I e rheMac8.chr10 84281643 606 + 92844088 I a score=194514.000000 s hg38.chr22_GL383582v2_alt 93912 45 + 162811 TTCCCAAGACTCTC----------AAGTGATTGTTCAttttccttttaggttctt s panTro5.chr22 28873799 45 + 37823149 TTCCCAAGACTCTC----------AAGTGATTGTTCAttttccttttaggttctt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148392 45 + 50109623 TTCCCAAGACTCTC----------AAGTGATTGTTCAttttccttttaggttctt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171131 45 + 4464012 TTCCCAAGACTCTC----------AAGTGATTGTTAAttttccttttaggttctt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667087 45 - 115148730 TTCCCAAGACTCTC----------AAGTGATTGTTCATTTTCCTCTTAGGttctt i nomLeu3.chr7b C 0 C 0 s chlSab2.chr19 24715468 45 + 33263144 TTCCCAAGACTCTC----------AAGTGATTGTCCATTTTCCTCTTAGGttctt i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 934516 45 + 1946073 TTCCCAAGACTCTC----------AAGTGATTGTCCATTTTCCTCTTAGGttctt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964763 43 - 2117846 TTCCC--GACTCTC----------AAGTGATTTTTCATTTTCCTCTTAGGTTCTT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1361134 45 - 1807191 TTCCCAAGACTCTC----------AAGTGATTTTTCGTTTTCCTCTTAGGTTCTT i cebCap1.NW_016107750v1 C 0 I 49 s aotNan1.NW_018512383v1 41021 45 + 5963231 TTCCCAAGACTCTC----------AAGTGATTTTTCATTTTCCTCTTAGGTTCTT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36305276 55 - 42659167 ttAATGAAAATCTCATAATGAGAGAGGTGACTGTTTCCTTTCCTTTTACTTTCTT i otoGar3.GL873526 C 0 I 65 s mm10.chr15 82828633 45 + 104043685 TCACAGTGACACAG----------AAGTGACTGCTCATTTTTCTCTTACATTCTT i mm10.chr15 C 0 C 0 s dasNov3.JH570235 78112 32 + 1056298 TTCCAGAGAATCTCATAATGAGAGAAGTG----------------TTA------- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46107500 35 - 69331447 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e cerAty1.NW_011999588v1 4085270 11 - 4483953 I e macNem1.NW_012012688v1 7118487 11 - 13098629 I e macFas5.chr10 87626655 9 - 96509753 I e rheMac8.chr10 84281643 606 + 92844088 I a score=14136.000000 s hg38.chr22_GL383582v2_alt 93957 3 + 162811 ttt s panTro5.chr22 28873844 3 + 37823149 ttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148437 3 + 50109623 ttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171176 3 + 4464012 ttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667132 3 - 115148730 ttt i nomLeu3.chr7b C 0 C 0 s chlSab2.chr19 24715513 3 + 33263144 ttt i chlSab2.chr19 C 0 I 1 s colAng1.NW_012115588v1 934561 3 + 1946073 ttt i colAng1.NW_012115588v1 C 0 I 302 s calJac3.chrUn_GL286373 1964806 3 - 2117846 TTT i calJac3.chrUn_GL286373 C 0 C 0 s aotNan1.NW_018512383v1 41066 3 + 5963231 TTT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36305396 3 - 42659167 ctt i otoGar3.GL873526 I 65 C 0 s mm10.chr15 82828678 1 + 104043685 --T i mm10.chr15 C 0 I 2 s dasNov3.JH570235 78144 3 + 1056298 TTT i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46107500 35 - 69331447 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e cerAty1.NW_011999588v1 4085270 11 - 4483953 I e macNem1.NW_012012688v1 7118487 11 - 13098629 I e macFas5.chr10 87626655 9 - 96509753 I e rheMac8.chr10 84281643 606 + 92844088 I a score=6006.000000 s hg38.chr22_GL383582v2_alt 93960 1 + 162811 t s panTro5.chr22 28873847 1 + 37823149 t i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148440 1 + 50109623 t i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171179 1 + 4464012 t i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667135 1 - 115148730 t i nomLeu3.chr7b C 0 C 0 s chlSab2.chr19 24715517 1 + 33263144 t i chlSab2.chr19 I 1 C 0 s colAng1.NW_012115588v1 934866 1 + 1946073 t i colAng1.NW_012115588v1 I 302 C 0 s calJac3.chrUn_GL286373 1964809 1 - 2117846 T i calJac3.chrUn_GL286373 C 0 C 0 s aotNan1.NW_018512383v1 41069 1 + 5963231 T i aotNan1.NW_018512383v1 C 0 I 65 s otoGar3.GL873526 36305399 1 - 42659167 t i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82828681 1 + 104043685 T i mm10.chr15 I 2 I 8 s dasNov3.JH570235 78147 1 + 1056298 T i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46107500 35 - 69331447 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e cerAty1.NW_011999588v1 4085270 11 - 4483953 I e macNem1.NW_012012688v1 7118487 11 - 13098629 I e macFas5.chr10 87626655 9 - 96509753 I e rheMac8.chr10 84281643 606 + 92844088 I a score=25150.000000 s hg38.chr22_GL383582v2_alt 93961 6 + 162811 tttttt s panTro5.chr22 28873848 6 + 37823149 tttttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148441 6 + 50109623 tttttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171180 6 + 4464012 tttttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667136 6 - 115148730 tttttt i nomLeu3.chr7b C 0 C 0 s chlSab2.chr19 24715518 6 + 33263144 tttttt i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 934867 6 + 1946073 tttttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964810 6 - 2117846 TCTTTT i calJac3.chrUn_GL286373 C 0 I 9 s otoGar3.GL873526 36305400 6 - 42659167 tttttt i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82828690 6 + 104043685 TTTCTC i mm10.chr15 I 8 C 0 s dasNov3.JH570235 78148 6 + 1056298 CTTTTT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e canFam3.chr10 46107500 35 - 69331447 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e cerAty1.NW_011999588v1 4085270 11 - 4483953 I e macNem1.NW_012012688v1 7118487 11 - 13098629 I e macFas5.chr10 87626655 9 - 96509753 I e rheMac8.chr10 84281643 606 + 92844088 I a score=4634.000000 s hg38.chr22_GL383582v2_alt 93967 5 + 162811 tttga s panTro5.chr22 28873854 4 + 37823149 tt-ga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148447 2 + 50109623 ---ga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171186 5 + 4464012 tttga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667142 5 - 115148730 ttgga i nomLeu3.chr7b C 0 C 0 s chlSab2.chr19 24715524 5 + 33263144 ttgga i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 934873 5 + 1946073 tttga i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36305406 5 - 42659167 tttga i otoGar3.GL873526 C 0 I 128 s mm10.chr15 82828696 5 + 104043685 CCTCA i mm10.chr15 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e dasNov3.JH570235 78154 0 + 1056298 C e canFam3.chr10 46107500 35 - 69331447 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e cerAty1.NW_011999588v1 4085270 11 - 4483953 I e macNem1.NW_012012688v1 7118487 11 - 13098629 I e macFas5.chr10 87626655 9 - 96509753 I e rheMac8.chr10 84281643 606 + 92844088 I a score=8633.000000 s hg38.chr22_GL383582v2_alt 93972 3 + 162811 tgg s panTro5.chr22 28873858 3 + 37823149 tgg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148449 3 + 50109623 tgg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171191 3 + 4464012 tgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667147 3 - 115148730 tag i nomLeu3.chr7b C 0 C 0 s chlSab2.chr19 24715529 3 + 33263144 tgg i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 934878 3 + 1946073 tgg i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36305539 3 - 42659167 tag i otoGar3.GL873526 I 128 C 0 s mm10.chr15 82828701 3 + 104043685 TGG i mm10.chr15 C 0 I 271 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e dasNov3.JH570235 78154 0 + 1056298 C e canFam3.chr10 46107500 35 - 69331447 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e cerAty1.NW_011999588v1 4085270 11 - 4483953 I e macNem1.NW_012012688v1 7118487 11 - 13098629 I e macFas5.chr10 87626655 9 - 96509753 I e rheMac8.chr10 84281643 606 + 92844088 I a score=20212.000000 s hg38.chr22_GL383582v2_alt 93975 13 + 162811 agtttcgc-----tcttg s panTro5.chr22 28873861 13 + 37823149 agtttcgc-----tcttg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148452 13 + 50109623 agtttcgc-----tcttg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171194 13 + 4464012 agtttcgc-----tcttg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667150 13 - 115148730 agtttctc-----tcttg i nomLeu3.chr7b C 0 C 0 s chlSab2.chr19 24715532 18 + 33263144 agttttgctcttgtcttg i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 934881 18 + 1946073 agttttgctcttgtcttg i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36305542 13 - 42659167 agactggg-----tcttg i otoGar3.GL873526 C 0 I 124 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e mm10.chr15 82828704 271 + 104043685 I e dasNov3.JH570235 78154 0 + 1056298 C e canFam3.chr10 46107500 35 - 69331447 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e cerAty1.NW_011999588v1 4085270 11 - 4483953 I e macNem1.NW_012012688v1 7118487 11 - 13098629 I e macFas5.chr10 87626655 9 - 96509753 I e rheMac8.chr10 84281643 606 + 92844088 I a score=55473.000000 s hg38.chr22_GL383582v2_alt 93988 28 + 162811 tcgct----------------ctggagtgcaatggcatgatctc s panTro5.chr22 28873874 28 + 37823149 tcgct----------------ctggagtgcaatggcatgatctc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148465 28 + 50109623 tcgct----------------ctggagtgcaatggcatgatctc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171207 28 + 4464012 tcgct----------------ctggagtgcaatggcatgatctc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667163 28 - 115148730 tcgct----------------ctggagtgcaatggcatgatcta i nomLeu3.chr7b C 0 C 0 s chlSab2.chr19 24715550 28 + 33263144 tcgct----------------ctggggtgcaatggcatgatctc i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 934899 28 + 1946073 tcact----------------ctggagtgcaatggtatgatctc i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36305679 44 - 42659167 tcactcattctgataaccaggctggagtgcagtgttaaaattat i otoGar3.GL873526 I 124 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e mm10.chr15 82828704 271 + 104043685 I e dasNov3.JH570235 78154 0 + 1056298 C e canFam3.chr10 46107500 35 - 69331447 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e cerAty1.NW_011999588v1 4085270 11 - 4483953 I e macNem1.NW_012012688v1 7118487 11 - 13098629 I e macFas5.chr10 87626655 9 - 96509753 I e rheMac8.chr10 84281643 606 + 92844088 I a score=5104.000000 s hg38.chr22_GL383582v2_alt 94016 2 + 162811 gg s panTro5.chr22 28873902 2 + 37823149 gg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148493 2 + 50109623 gg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171235 2 + 4464012 gg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667191 2 - 115148730 gg i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87626664 2 - 96509753 ga i macFas5.chr10 I 9 C 0 s chlSab2.chr19 24715578 2 + 33263144 gg i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 934927 2 + 1946073 gg i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36305723 2 - 42659167 ag i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e mm10.chr15 82828704 271 + 104043685 I e dasNov3.JH570235 78154 0 + 1056298 C e canFam3.chr10 46107500 35 - 69331447 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e cerAty1.NW_011999588v1 4085270 11 - 4483953 I e macNem1.NW_012012688v1 7118487 11 - 13098629 I e rheMac8.chr10 84281643 606 + 92844088 I a score=404631.000000 s hg38.chr22_GL383582v2_alt 94018 97 + 162811 ctcaccgcaacctccacctcccgggttcaagcgattcccctgcctcagcctcccgagtagatgggattacaggcacctgccaccacgcccagctaat s panTro5.chr22 28873904 97 + 37823149 ctcaccgcaacctccacctcccgggttcaagcgattcccctgcctcagcctcccgagtagatgggattataggcacccaccaccacgcccagctgat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148495 97 + 50109623 ctcaccgcaacctccacctcccgggttcaagcgattcccctgcctcagcctcccgagtagatgggattataggcgcccgccaccacgcccagctaat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171237 97 + 4464012 ctcaccgcaacctccacctcccgggttcaagcgattcccctgcctcagcctcccgagtagatgggattacaggcacccaccaccacgcccagctaat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667193 97 - 115148730 ctcaccgtaacctccacctcccgggttcaagcgattcccctgcctcagcctcccaagtagatgggattacaggcacccgccaccacgcccggctaat i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87626666 97 - 96509753 ctcaccacaacctctacctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgttattgcaagcagacaccaccacgcccagctact i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7118498 97 - 13098629 ctcaccacaacctctacctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgttattgcaagcacccaccaccacgcccagctact i macNem1.NW_012012688v1 I 11 C 0 s cerAty1.NW_011999588v1 4085281 97 - 4483953 ctcaccacaacctctacctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgttattgcaagcacccaccaccacgcccagctact i cerAty1.NW_011999588v1 I 11 C 0 s chlSab2.chr19 24715580 97 + 33263144 ctcaccacaacctctacctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgttattgcaagcacccaccaccacgcccagctact i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 934929 97 + 1946073 ctcaccacaacctctatctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgttattgcaagcacccgccaccgcccccagctact i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36305725 93 - 42659167 ---actgcaa-ttcaaactcatggactcaagcgaacctcttgtctcagcctcctaagtagctggaactataggcaagcaccaccaagcctggctaat i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e mm10.chr15 82828704 271 + 104043685 I e dasNov3.JH570235 78154 0 + 1056298 C e canFam3.chr10 46107500 35 - 69331447 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e rheMac8.chr10 84281643 606 + 92844088 I a score=608608.000000 s hg38.chr22_GL383582v2_alt 94115 131 + 162811 ctttgtatttttagtagagat-gaggtttcaccatgttggccaggctagtcttgaactc---------------ct-gatctca-----ggtgatctg--cccacctcagcctctcaaagtgctgggattacaggcatcagccaccgc-acctggc s panTro5.chr22 28874001 131 + 37823149 ctttgtatttttagtagagat-gaggtttcaccatgttggccaggctagtcttgaactc---------------ct-gatctca-----ggtgatctg--cccacctcagcctctcaaagtgctgggattacaggcatcagccaccgc-acctggc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148592 131 + 50109623 ctttgtatttttagtagagat-gaggtttcaccatgttggccaggctagtcttgaactc---------------ct-gatctca-----ggtgatctg--cccacctcagcctctcaaagtgctgggattacaggcatcagccaccgc-acctggc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171334 131 + 4464012 ctttgtatttttagtagagat-gaggtttcaccatgttggccaggctagtcttgaactc---------------ct-gacctca-----ggtgatctg--cccacctcagcctctcaaagtgctgggattacaggcatcagccaccgc-acctggc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667290 131 - 115148730 ctttgtattttaagtagagat-ggggtttcaccatgttggccaggctagtcttgaactc---------------ct-gacctca-----cgtgatctg--cccacctcagcctctcaaagtgctgggattacaggcatcagccactgc-gcctggc i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87626763 133 - 96509753 ctttgtatttttagtagagat-ggggtttcaacatgttggctaggctagtcttgaactc---------------ct-gacctca-----ggtgatctgcccccacctcagcctcccaaagtgctgggattacaggcgtcagccaccgc-gcctggc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7118595 133 - 13098629 ctttgtatttttagtagagat-ggggtttcaacatgttggccaggctagtcttgaactc---------------ct-gacctca-----ggtgatctgcccccacctcagcctcccaaagtgctgggattacaggcatcagccaccgc-gcctggc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4085378 131 - 4483953 ctttgtatttttagtagagat-ggggtttcaacatgttggccaggctagtcttgaactc---------------ct-gacctca-----ggtgatctg--cccacctcagcctcccaaagtgctgggattacaggcgtcagccaccgc-acctggc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24715677 131 + 33263144 ctttgtatttttagtagagat-ggggtttcaacatgttggccaggctagtcttgaactc---------------ct-gacctca-----ggtgatctg--cccacctcagcctcccaaagtgttgggattacaggcgtcagccaccgc-gcctggc i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 935026 132 + 1946073 ctttgtatttttagtagagat-ggggtttcaacatgttggccaggctagtcttgaactc---------------ctggatctca-----ggtgatctg--cccacctcagcctcccgaagtgctgggattacaggcgtcagctaccgc-gcctggc i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36305818 129 - 42659167 taaaatgtttcttgtagagac--agatgcagtaatgttgtccaggctggtctttaactc---------------ct-ggcctca-----agcaatct---cctgcctcagcttcccaaagcgttggcattgtaactatgggccactgc-atccagc i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82828975 152 + 104043685 tttttttttttttttggagacaggggtttctctgtgtagctctggctgtcctggaactcactctgtagaccaggct-ggcctcgaactcagaaatcca--cctgtctctgcctccc-aagtgctgggattaaaggcgtgcgccaccactgtctggc i mm10.chr15 I 271 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e dasNov3.JH570235 78154 0 + 1056298 C e canFam3.chr10 46107500 35 - 69331447 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e rheMac8.chr10 84281643 606 + 92844088 I a score=3971.000000 s hg38.chr22_GL383582v2_alt 94246 3 + 162811 cTT----------------- s panTro5.chr22 28874132 3 + 37823149 cTT----------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148723 3 + 50109623 cTT----------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171465 3 + 4464012 cTT----------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667421 3 - 115148730 cTT----------------- i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87626896 3 - 96509753 cTT----------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7118728 3 - 13098629 cTT----------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4085509 3 - 4483953 cTT----------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24715808 3 + 33263144 cTT----------------- i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 935158 3 + 1946073 cTT----------------- i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36305947 20 - 42659167 TTCACTCTTCTTGTCTTTTA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82829127 1 + 104043685 --t----------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46107535 3 - 69331447 TTT----------------- i canFam3.chr10 I 35 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e dasNov3.JH570235 78154 0 + 1056298 C e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e rheMac8.chr10 84281643 606 + 92844088 I a score=157206.000000 s hg38.chr22_GL383582v2_alt 94249 31 + 162811 AGGTTCTTTAATGCAACAGATTTCTCCCTCA s panTro5.chr22 28874135 31 + 37823149 AGGTTCTTTAATGCAACAGATTTCTCCCTCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148726 31 + 50109623 AGGTTCTTTAATGCAACAGATTTCTCCCTCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171468 31 + 4464012 AGGTTCTTTAATGCAACAGATTTCTCCCTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667424 31 - 115148730 AGGTTCTTTAATGCAACAGAGTTCTCCCTCA i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87626899 31 - 96509753 AGGTTCTTTAATGCAACAGACTTCTCCCTCA i macFas5.chr10 C 0 I 356 s macNem1.NW_012012688v1 7118731 31 - 13098629 AGGTTCTTTAATGCAACAGACTTCTCCCTCA i macNem1.NW_012012688v1 C 0 I 326 s cerAty1.NW_011999588v1 4085512 31 - 4483953 AGGTTCTTTAATGCAACAGACTTCTCCCTCA i cerAty1.NW_011999588v1 C 0 I 331 s chlSab2.chr19 24715811 31 + 33263144 AGGTTCTTTAATGCAACAGACTTCTCCCTCA i chlSab2.chr19 C 0 I 347 s colAng1.NW_012115588v1 935161 31 + 1946073 AGGTTCTTTAATGCAACAGACTTCTCCCTCA i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36305967 31 - 42659167 AAGTTTTTTTAAGATACAGGTTTATTTAttt i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82829128 19 + 104043685 AATTAAACTAatgc-------tttta----- i mm10.chr15 C 0 C 0 s canFam3.chr10 46107538 30 - 69331447 ATATTCTTTAATGCAACAAATTTCTCCCTC- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 78154 31 + 1056298 ACATTATTTAGTGTAACAAGTTTCTTTCTCA i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e rheMac8.chr10 84281643 606 + 92844088 I a score=2648.000000 s hg38.chr22_GL383582v2_alt 94280 6 + 162811 ATTTGC s panTro5.chr22 28874166 6 + 37823149 ATTTGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148757 6 + 50109623 ATTTGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171499 6 + 4464012 ATTTGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667455 6 - 115148730 ATTTGC i nomLeu3.chr7b C 0 C 0 s otoGar3.GL873526 36305998 6 - 42659167 atttgt i otoGar3.GL873526 C 0 I 95 s mm10.chr15 82829147 3 + 104043685 atc--- i mm10.chr15 C 0 C 0 s dasNov3.JH570235 78185 1 + 1056298 -T---- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e canFam3.chr10 46107568 0 - 69331447 C e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I e colAng1.NW_012115588v1 935192 0 + 1946073 C e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e chlSab2.chr19 24715842 347 + 33263144 I e cerAty1.NW_011999588v1 4085543 331 - 4483953 I e macNem1.NW_012012688v1 7118762 326 - 13098629 I e macFas5.chr10 87626930 356 - 96509753 I e rheMac8.chr10 84281643 606 + 92844088 I a score=3457.000000 s hg38.chr22_GL383582v2_alt 94286 8 + 162811 CTAGTGAA s panTro5.chr22 28874172 8 + 37823149 CTAGTGAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148763 8 + 50109623 CTAGTGAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171505 8 + 4464012 CTAGTGAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667461 7 - 115148730 CTAGTGA- i nomLeu3.chr7b C 0 C 0 s colAng1.NW_012115588v1 935192 4 + 1946073 ----TGAA i colAng1.NW_012115588v1 C 0 I 3 s mm10.chr15 82829150 6 + 104043685 ccagta-- i mm10.chr15 C 0 C 0 s canFam3.chr10 46107568 7 - 69331447 -CTGTAAA i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 78186 5 + 1056298 ---GGAAA i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e otoGar3.GL873526 36306004 95 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I e manLeu1.NW_012102031v1 13989830 7400 - 14338769 I e chlSab2.chr19 24715842 347 + 33263144 I e cerAty1.NW_011999588v1 4085543 331 - 4483953 I e macNem1.NW_012012688v1 7118762 326 - 13098629 I e macFas5.chr10 87626930 356 - 96509753 I e rheMac8.chr10 84281643 606 + 92844088 I a score=51750.000000 s hg38.chr22_GL383582v2_alt 94294 8 + 162811 ACCTACAA s panTro5.chr22 28874180 8 + 37823149 ACCTACAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148771 8 + 50109623 ACCTACAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171513 8 + 4464012 ACCTACAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667468 2 - 115148730 ------AA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84282249 8 + 92844088 ACCTACAA i rheMac8.chr10 I 606 C 0 s macFas5.chr10 87627286 8 - 96509753 ACCTACAA i macFas5.chr10 I 356 C 0 s macNem1.NW_012012688v1 7119088 8 - 13098629 ACCTACAA i macNem1.NW_012012688v1 I 326 C 0 s cerAty1.NW_011999588v1 4085874 8 - 4483953 ACCTACAA i cerAty1.NW_011999588v1 I 331 C 0 s chlSab2.chr19 24716189 8 + 33263144 ACCTACAA i chlSab2.chr19 I 347 C 0 s manLeu1.NW_012102031v1 13997230 8 - 14338769 ACCTACAA i manLeu1.NW_012102031v1 I 7400 C 0 s colAng1.NW_012115588v1 935199 8 + 1946073 ACCTATAA i colAng1.NW_012115588v1 I 3 C 0 s canFam3.chr10 46107576 8 - 69331447 ATCCACAA i canFam3.chr10 I 1 I 11 s dasNov3.JH570235 78191 8 + 1056298 AGCTACAA i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e mm10.chr15 82829156 0 + 104043685 C e otoGar3.GL873526 36306004 95 - 42659167 I e proCoq1.NW_012136747v1 5090949 2420 - 6317780 I e micMur3.chr7 5727281 2024 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=520678.000000 s hg38.chr22_GL383582v2_alt 94302 61 + 162811 -----------TTTCACTAGGCAAATTGTGACAT-------CAGGAGATC---AATAA----------AGAAGGAACTCTGGGTCTGTCTTC s panTro5.chr22 28874188 61 + 37823149 -----------TTTCGCTAGGCAAATTGTGACAT-------CAGGAGATC---AATAA----------AGAAGGAACTCTGGGTCTGTCTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148779 61 + 50109623 -----------TTTCGCTAGGCAAATTGTGACAT-------CAGGAGATC---AATAA----------AGAAGGAACTCTGGGTCTGTCTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171521 61 + 4464012 -----------TTTCACTAGGCAAATTGTGACAT-------CAGGAGATC---AATAA----------AGAAGGAACTCTGGGTCTGTCTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667470 61 - 115148730 -----------TTTCACTAGGCAAATTTTGACAT-------CAGGAGATC---AATAA----------AGAAGGAACTCTGGGTCTGTCTTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84282257 61 + 92844088 -----------CTTCAGTAGGCAAATTCTGACAT-------CAGGAGATC---AATAA----------AGAAGGAACTCTGGGTCTATCTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87627294 61 - 96509753 -----------CTTCAGTAGGCAAATTCTGACAT-------CAGGAGATC---AATAA----------AGAAGGAACTCTGGGTCTATCTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7119096 61 - 13098629 -----------CTTCAGTAGGCAAATTCTGAcat-------caggagatc---aataa----------agaaggaactctgggtctatcttc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4085882 61 - 4483953 -----------CTTCAGTAGGCAAATTCTGAcat-------caggagatc---aataa----------agaaggaactctgggtctatcttc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24716197 61 + 33263144 -----------TTTCAGTAGGCAAATTCTGACAT-------CAGGAGATC---AATAA----------Agaaggaactctgggtctatcctc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13997238 61 - 14338769 -----------CTTCAGTAGGCAAATTCTGAcat-------caggagatc---aataa----------agaaggaactctgggtctatcttc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 935207 61 + 1946073 -----------TTTCACTAGGCAAATTCTGACAT-------CAGGAGatc---aataa----------ataaggaactctgggtctgtcttc i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5729305 61 + 108171978 -----------TTTCATTAGGCAaattttggcat-------cacaaaatc---actga----------agaagggactctgggtctgtcctc i micMur3.chr7 I 2024 C 0 s proCoq1.NW_012136747v1 5093369 61 - 6317780 -----------TTTCATTAGGCAAATTTTGGCAT-------CACAAGATC---ACTAA----------AGAAGGGACTCTGGCTCTGTCTTC i proCoq1.NW_012136747v1 I 2420 C 0 s otoGar3.GL873526 36306099 59 - 42659167 -----------TTTCATTAGGCAAATTTTGGCAT---------CAAGATC---ACTGA----------AGATGAGACTCTGGGtcttttttt i otoGar3.GL873526 I 95 I 111 s mm10.chr15 82829156 33 + 104043685 ------------ctcacgaggcagctt------------------------------------------ggtggagctctgtgt-----tcc i mm10.chr15 C 0 I 2 s canFam3.chr10 46107595 66 - 69331447 -----------TTTTATTGGGCAAATCCTGGCAT-------C-----ATC---AGTGACACTGGAACTAGAAGGGATGCTGGGTCTGTCCTC i canFam3.chr10 I 11 I 3 s dasNov3.JH570235 78199 81 + 1056298 CTTCACCCACTGTTCATTAGGGAAACT-TGGCACACTatcacagaacactgaaactag----------aaaagggactataggtctgtcttc i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=16391.000000 s hg38.chr22_GL383582v2_alt 94363 8 + 162811 GACATCTG s panTro5.chr22 28874249 8 + 37823149 GACATCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148840 8 + 50109623 GACATCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171582 8 + 4464012 GACATCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667531 8 - 115148730 GACATCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84282318 8 + 92844088 AACATCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87627355 8 - 96509753 AACATCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7119157 8 - 13098629 aacatctg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4085943 6 - 4483953 aaca--tg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24716258 8 + 33263144 aacatctg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13997299 8 - 14338769 aacatctg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 935268 8 + 1946073 aatatctg i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5729366 8 + 108171978 aatgtcct i micMur3.chr7 C 0 I 1 s proCoq1.NW_012136747v1 5093430 8 - 6317780 AATGTCCT i proCoq1.NW_012136747v1 C 0 I 1 s otoGar3.GL873526 36306269 6 - 42659167 --ggcacc i otoGar3.GL873526 I 111 I 136 s mm10.chr15 82829191 8 + 104043685 gccagcct i mm10.chr15 I 2 I 1 s canFam3.chr10 46107664 5 - 69331447 GACCT--- i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 78280 6 + 1056298 -aattct- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=2138686.000000 s hg38.chr22_GL383582v2_alt 94371 227 + 162811 TTTTTCTTGTAgaagaaacaagaggcta-aagcaaagtgacctgctaaagatcacatagc---tagtaag-agaacttagaactttacctctttttcttctgaaccccaagttcaactttcttcataccataccatgacgcctGT-------TAGCCCCCttcattcactcaactatccaacatttgaaaagtactttctaggtgccaggtgccaaagatagaatataaataCTTATCT s panTro5.chr22 28874257 226 + 37823149 TTTTTCTTGTAgaagaaaca-gaggcta-aagcaaagtgacctgctaaagatcacatagc---tagtaag-agaacttagaactttacccctttttcttctgaaccccaagttcaactttcttcataccataccatgacgcctGT-------TAGCCCCCttcaatcactcaactatccaacatttgaaaagtactttctaggtgccaggtgccaaagatagaatataaataCTTATCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41148848 226 + 50109623 TTTTTCTTGTAgaagaaaca-gaggcta-aagcaaagtgacctgctaaagatcacatagc---tagtaag-agaacttagaactttacccctttttcttctgaaccccaagttcaactttcttcataccataccatgacgcctGT-------TAGCCCCCttcattcactcaactatccaacatttgaaaagtactttctaggtgccaggtgccaaagatagaatataaataCTTATCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171590 226 + 4464012 TTTTTCTTGTAgaagaaaca-ggggcta-aagcaaagtgacctgctaaagatgacatagc---tagtaag-agaacttagaactttacccctttttcttctgaaccccaagttcaactttcttcataccataccatgatgcctGT-------TAGCCCCCttcattcactcaactatccaacatttgaaaagtactttctacgtgccaggtgccaaagatagaatataaataCTTATCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667539 226 - 115148730 TTTTTCTTGTAgaagaaaca-gaggcta-aagccaaatgacctgctaaggatcacatagc---tagtaag-agaacttagaactttacccctttttcttctgaaccccaggttcaactttcttcataccacaccaTGACACCTGT-------TAGCCCCCttcattcactcaactatccaacatttgaaaagtactttctaggtgccaggtgccaaagatagaatataaataCTTATCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84282326 226 + 92844088 TTTTTCTTGTtgaagaaaca-gaggcca-aaacaaagtgacctgctaaagatcacatagt---aagtaag-agaacttagaacttcacccctttttcttctgaaccccaagttcaactttcttcataccataccgtgatgcctGT-------TAGCCCCCttcattcactcaaccatccaacatttgaaaagtactctctaggtgccaggtgccaaaggtagaatataaataCTTATCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87627363 226 - 96509753 TTTTTCTTGTtgaagaaaca-gaggcca-aaacaaagtgacctgctaaagatcacatagt---aagtaag-agaacttagaacttcacccctttttcttctgaaccccaagttcaactttcttcataccataccgtgatgcctGT-------TAGCCCCCttcattcactcaaccatccaacatttgaaaagtactctctaggtgccaggtgccaaaggtagaatataaataCTTATCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7119165 226 - 13098629 tttttcttgttgaagaaaca-gaggcca-aaacaaagtgacctgctaaagatcacatagt---aagtaag-agaacttagaacttcacccctttttcttctgaaccccaagttcaactttcttcataccataccgtgatgcctGT-------TAGCCCCCttcattcactcaaccatccaacatttgaaaagtactctctaggtgccaggtgccaaaggtagaatataaataCTTATCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4085949 226 - 4483953 tttttcttgttgaagaaaca-gaggcca-aaacaaagtgacctgctaaagatcacatagt---aagtagg-agaacttagaacttcacccctttttcttctgaaccccaagttcaactttcttcataccataccgtgatgcctGT-------TAGCCCCCttcattcactcaaccatccaacatttgaaaagtactctctaggtgccaggtgccaaaggtagaatataaataCTTATCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24716266 226 + 33263144 tttttcttgttgaagaaaca-gaggcca-aaacaaagtgacctgctaaagatcacatagt---aagtaag-agaacttagaacttcacccctttttcttctgaaccccaagttcaactttcttcataccataccatgatgcctGT-------TAGCCCCCttcattcactcaactatctaacatttgaaaagtattctctaggtgccaggtgccaaaggtagaatataaataCTTATCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13997307 226 - 14338769 tttttcttgttgaagaaaca-gaggcca-aaacaaagtgacctgctaaagatcacatagt---aagtaag-agaacttagaacttcacccctttttcttctgaaccccaagttcaactttcttcataccataccgtgatgcctGT-------TAGCCCCCttcattcactcaaccatccaacatttgaaaagtactctctaggtgccaggtgccaaaggtagaatataaataCTTATCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 935276 226 + 1946073 tttttcttgttgaagaaaca-gaggcca-aagcaaagtgacctgctaaagatcacatagt---aagtaag-agaacttagaactttacccctttttcttctgaaccccaagttcaactttcgtcataccataccatgatgcctGT-------TAGTCCCCttcattcactcaactatccaacatttgaaaagtactctctaggtgccaggtcccaaagatagaatataaataCTTATCT i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5729375 225 + 108171978 tttttctagttgaagaaata-gaggcta-aagcaaaggtacctgcagaggatcacacagg---tagtaac-agaatttagaacttcagccttttctcttctgaacctcaagttcaacattcttCATAGCATACTCTGATGTGTTT-------TAGTCCCCttcattccctcaactgcccaacatttg-aaagtacttcctaagtgccaggtgctgaagataGACTATAAAAACTTATCT i micMur3.chr7 I 1 I 2 s proCoq1.NW_012136747v1 5093439 226 - 6317780 TTTTTCTAGTTGAAGAAATA-GAGGCTA-AAGCAAAGGTACCTGCAGAGGATCCAACAGG---TAGTAAC-AGAATTTAGAATTTCAGCCTTTTTTCTTCTAAACCTCAAATTCAACATTCTTCATAGCATACTCTGATGCCTTT-------TAGTCCCCttcattccctcaactgcccaacatttgaaaagtacttcctaagtaccaggtgctgaagataGACTATAAAAACTTATCT i proCoq1.NW_012136747v1 I 1 I 35 s otoGar3.GL873526 36306411 220 - 42659167 tttttctagttgaagaaaaa-caggcta-aagcaaagagatctgca---gataacatagc---tagtaac-aaacatttgaacttcaatcttttttcccctgaacctcaagttcaaccttcttcataccataccatgttgtctTT-------TAGTTTCCttcattccctcaactacc---catctgaaaagcccttcctaagtgtcaggtgctgaagatagaaTGTAAAAACTTATCT i otoGar3.GL873526 I 136 I 2 s mm10.chr15 82829200 112 + 104043685 ---gtctacttaacaaaaca---------aaaca-----------------------atc---aaacaag-agaaatt---------------------ctAAA----------------------------------------------------------caatcaatcaatcaatcaat---------GTGCCTCCCATGTGCCAATTGACAAAGACAAAATATAAAAACCAATTT i mm10.chr15 I 1 I 2 s canFam3.chr10 46107669 204 - 69331447 TGTTTCTGGTTCCAGAAACA-GAAA--G-AAGCAACATGGCCTGCTAGAGATCACATAACTAGAAGTACC-AGCACTCTGA-------------------TGAACCCCAAGCTTGACATTCT--GTCTCATACCACATGGCCTGC-------TAATCCTCTTCGTTCACTCAACTATCCAACATTCGAAAAGTATTTCCTATATGCCAGATGCC--AGACAGAATATAATACCTTATCT i canFam3.chr10 C 0 I 2 s dasNov3.JH570235 78286 234 + 1056298 tttttccagttgaagaaacg-gaggctagaagcaaagttccctgctaaagatcacatacc---cagaaagcaagaagtagaccttcattccttttccttctgaacctccagttcaaaattctttataccactcc-TGTTTCTTCTGAACCTCCAGTCCCCTTCACTGACTCAACTAGCCAACATCTGAAAAGCACTTCCTATGAACCAGGTGCCAAAGACAGAATACAAACACTCATCT i dasNov3.JH570235 C 0 I 2 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=271467.000000 s hg38.chr22_GL383582v2_alt 94598 37 + 162811 ATAGTATCTTCCATGTGTAAGGTTTTCCCTTCTACCC- s panTro5.chr22 28874483 37 + 37823149 ATAGTATCTTCCATGTGTAAGGTTTTCCCTTCTACCC- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41149074 37 + 50109623 ATAGTATCTTCCATGTGTAAGGTTTTCCCTTCTACCC- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171816 37 + 4464012 ATAGTATCTTCCATGTGTAAGGTTTTCCCTTCTACCC- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667765 37 - 115148730 ATAGTATCTTCCATGTGTAAGGTTTTCCCTTCTACCC- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84282552 37 + 92844088 ATAGTGTCTTCCATGTGTAAGGTTTTCCCTTCTACCC- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87627589 37 - 96509753 ATAGTGTCTTCCATGTGTAAGGTTTTCCCTTCTACCC- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7119391 37 - 13098629 ATAGTGTCTTCCATGTGTAAGGTTTTCCCTTCTACCC- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4086175 37 - 4483953 ATAGTGTCTTCCATGTGTAAGGTTTTCCCTTCTACCC- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24716492 37 + 33263144 ATAGTGTCTTCCATGTGTAAGGTTTTCCCTTCTACCC- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13997533 37 - 14338769 ATAGTGTCTTCCATGTGTAAGGTTTTCCCTTCTACCC- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 935502 37 + 1946073 ATAGTGTCTTCCATGTGTAAGGTTTTCCCTTCTATCC- i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5729602 32 + 108171978 ATAATATTTTCC-----TCTGTTCTTATCTTCTATCA- i micMur3.chr7 I 2 I 1 s otoGar3.GL873526 36306633 35 - 42659167 ATAATATCTTTT--GTATCTGTTCTCTTCTTCTATCC- i otoGar3.GL873526 I 2 C 0 s mm10.chr15 82829314 28 + 104043685 ATAA-ATTCTCCATGTGT--------CTGCTCTACAC- i mm10.chr15 I 2 C 0 s canFam3.chr10 46107875 35 - 69331447 ACAGTGTCTTC--TGTTTCTATTCTCCCCTTCTGTCC- i canFam3.chr10 I 2 I 1 s dasNov3.JH570235 78522 36 + 1056298 ATAATATCTTTCATCTCTC--TTCCTCTCCCCTAACCC i dasNov3.JH570235 I 2 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e proCoq1.NW_012136747v1 5093665 35 - 6317780 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=264477.000000 s hg38.chr22_GL383582v2_alt 94635 27 + 162811 AAAAATCAATACCCAGGCCAGTACAAT s panTro5.chr22 28874520 27 + 37823149 AAAAATCAATACCCAGGCTAGTACAAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41149111 27 + 50109623 AAAAATCAGTACCCAGGCTAGTACAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171853 27 + 4464012 AAAAATCAATACCCAGGCTAGTATAAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667802 27 - 115148730 AAAAATCAATACCCAGGCTAGTACAAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84282589 27 + 92844088 AAAAATCAATACCCAGGCTAGTACAAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87627626 27 - 96509753 AAAAATCAATACCCAGGCTAGTACAAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7119428 27 - 13098629 AAAAATCAATACCCAGGCTAGTACAAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4086212 27 - 4483953 AAAAATCAATACCCAGGCTAGTACAAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24716529 27 + 33263144 AAAAATCAATACCCAGGCTAGTACAAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13997570 27 - 14338769 AAAAATCAATACCCAGGCTAGTACAAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 935539 27 + 1946073 AAAAATCAGTACCCACGCTAGTACAAT i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5729635 27 + 108171978 AAAAATCAATACCCAGGCTTGTACCAT i micMur3.chr7 I 1 C 0 s proCoq1.NW_012136747v1 5093700 27 - 6317780 AAAAATCAATACCCAGGCTAGTACCAT i proCoq1.NW_012136747v1 I 35 C 0 s otoGar3.GL873526 36306668 24 - 42659167 AAAAATCTATACT--GGCTAAT-CTAT i otoGar3.GL873526 C 0 I 308 s mm10.chr15 82829342 27 + 104043685 CCTAACCTGTACTTTAGCCAGTATAAC i mm10.chr15 C 0 C 0 s canFam3.chr10 46107911 27 - 69331447 CCAAATCAATATGTAGGCTAATACCAT i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 78558 26 + 1056298 CCAAATCAATACC-AGGTTAGTGCCAT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=736396.000000 s hg38.chr22_GL383582v2_alt 94662 71 + 162811 TTCTAATTAAATTTTTATTCTATACTTTTTACCTGGAGTAGCTATTTGCATTATCATCCTCCTATGCTACA s panTro5.chr22 28874547 71 + 37823149 TTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41149138 71 + 50109623 TTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171880 71 + 4464012 TTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667829 71 - 115148730 TTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAATAGCTATTTGCGTCATCATCCTCCTATGCTACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84282616 71 + 92844088 TTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87627653 71 - 96509753 TTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7119455 71 - 13098629 TTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4086239 71 - 4483953 TTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTCTGCTACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24716556 71 + 33263144 TTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13997597 71 - 14338769 TTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 935566 71 + 1946073 TTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACA i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5729662 71 + 108171978 TTCCAATTAGATTTTTATTCTTTACTTTTTGCCTGAAGAAACTACTTATACTCACATTCTCTTATACTGTA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5093727 71 - 6317780 TTCCAATTAGATTTTTATTCTTTACTTTTTGCCTGAAAAAACTATTTATACTAACATTCTCCCATACTGTA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36307000 71 - 42659167 TTCCAATTAGATTTTTATTCTTTACTTTTTGCTTGAAGCCACTATCTGTACTACCATTCTCCTATATTGCA i otoGar3.GL873526 I 308 I 5 s mm10.chr15 82829369 65 + 104043685 TTCCAATTAGATTTTTACT-----CGTTTTCCCTGAAGAAAAACTTTCCCTTCAC-TTTTCCCACACTGTA i mm10.chr15 C 0 C 0 s canFam3.chr10 46107938 64 - 69331447 TTCCAATTGGATTTTTGTT-------TTTTACCTGAAGAAACTAGTTACACTACCATTCTCATCTAATGCA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 78584 69 + 1056298 TTCCAAGTAGATTTTTATTCTTTACCTTTTACCTGAAGAAACTATTTGCACTATAATTCTTCTA--CTATA i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=406927.000000 s hg38.chr22_GL383582v2_alt 94733 43 + 162811 AATAATATATTA----AAGTCA----CTGCACAGCT----AAATGTCCTTTGTTT s panTro5.chr22 28874618 43 + 37823149 AATAATATATTA----AAGTCA----CTGCACAGCT----AAATGTCCTTTGTTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41149209 43 + 50109623 AATAATATATTA----AAGTCA----CTGCACAGCT----AAATGTCCTTTGTTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171951 43 + 4464012 AATAATATATTA----AAGTCA----CTGCACAGCT----AAATGTCCTTTGTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667900 43 - 115148730 AATAATATACTA----AAGTCA----CTGCACAGCT----AAATGTCCTTTGTTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84282687 43 + 92844088 AATAATATATTA----AAGTCA----CTGCATAGCT----AAATATCCTTTGTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87627724 43 - 96509753 AATAATATATTA----AAGTCA----CTGCATAGCT----AAATATCCTTTGTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7119526 43 - 13098629 AATAATATATTA----AAGTCA----CTGCATAGCT----AAATATCCTTTGTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4086310 43 - 4483953 AATAATATATTA----AAGTCA----CTGCATAGCT----AAATATCCTTTGTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24716627 43 + 33263144 AATAATATATTA----AAGTCA----CTGCATAGCT----AAATATTCTTTGTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13997668 43 - 14338769 AATAATATATTA----AAGTCA----CTGCATAGCT----AAATATCCTTTGTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 935637 43 + 1946073 AATAATATATTA----AAGTCA----CTACATAGCT----AAATATCCTTTGTTT i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5729733 43 + 108171978 AACAATATAATA----AAGTCA----CTGCACAGCT----AAATGTCTTTTGTTT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5093798 43 - 6317780 AATAATATAATA----AAGTCA----CTGCATAGCT----AAATGTCTTTTGTTT i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82829434 43 + 104043685 ---ATTATATCACACTAAGCCC----CACCATAGC-----AAGTGTCCTTGACTG i mm10.chr15 C 0 I 283 s canFam3.chr10 46108002 47 - 69331447 AATAATATAATA----AAGTCA----CCGCATAGCTAAAAAAAAGTCCTTTGTTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 78653 42 + 1056298 -----AAGAAAA----AAGCCACTGTCTGTATAGCC----AAATGTCCTTTGTTT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e otoGar3.GL873526 36307071 5 - 42659167 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=167228.000000 s hg38.chr22_GL383582v2_alt 94776 19 + 162811 TTGACCACAGTGTTACTAC s panTro5.chr22 28874661 19 + 37823149 TTGACCACAGTGTTACTAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41149252 19 + 50109623 TTGACCACAGTGTTACTAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3171994 19 + 4464012 TTGACCACAATGTTACTAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667943 19 - 115148730 TTGACCACAATATTACTAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84282730 19 + 92844088 TTGACCACAATGTTACTAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87627767 19 - 96509753 TTGACCACAATGTTACTAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7119569 19 - 13098629 TTGACCACAATGTTACTAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4086353 19 - 4483953 TTGACCACAATGTTACTAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24716670 19 + 33263144 TTGACCACAATGTTACTAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13997711 19 - 14338769 TTGACCACAATGTTACTAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 935680 19 + 1946073 TTCACCACAGTGTTACTAC i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5729776 19 + 108171978 TTAACTACATTGTTGTTAC i micMur3.chr7 C 0 I 12 s proCoq1.NW_012136747v1 5093841 19 - 6317780 TTAACTACACTGTTACTAC i proCoq1.NW_012136747v1 C 0 I 12 s canFam3.chr10 46108049 19 - 69331447 TTGACTACACTGCTGTTAC i canFam3.chr10 C 0 I 12 s dasNov3.JH570235 78695 19 + 1056298 CTCACCATACTGCTGTTAC i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e mm10.chr15 82829477 283 + 104043685 I e otoGar3.GL873526 36307071 5 - 42659167 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=827066.000000 s hg38.chr22_GL383582v2_alt 94795 96 + 162811 ATTCACTCCAAGCAGAGG-TAAGTCCATACAATACTGCTCCCCAGGAAGAAT----GAGACACATTG-GGGGCTCCAAGCATGATTTCTAAATTAAGACACA s panTro5.chr22 28874680 96 + 37823149 ATTCACTCCAAGCAGAGG-TAAGTCCATACAATACTGCTCCCCAGGAAGAAT----GAGACACACTG-GGGGCTCCAGGCATGATTTCTAAATTAAGACACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41149271 96 + 50109623 ATTCACTCCAAGCAGAGG-TAAGTCCATACAATACTGCTCCCCAGGAAGAAT----GAGACACACTG-GGGGCTCCAAGCATGATTTCTAAATTAAGACACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3172013 96 + 4464012 ATTCACTCCAAGCAGAGG-TAAGTCCACACAATACTGCTCCCCAGGAAGAAT----GAGACACACTG-GGGGCTCCAAGCATGATTTCTAAATTAAGACACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106667962 96 - 115148730 ATTCACTCCAAGCAGAGG-TAAGTCCATACAATACTGCTCCCCAGGAAGAAT----GAGACACATTG-GAGGCTCCAAGCATGATTTCTAAATTAAGACACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84282749 91 + 92844088 ATTCACTCCAAGCAGAGG-TAAGTCC-----ATACTGCCCCCCAGGCAGAAT----GAGACACACTG-GGGGCTCCAAGCATGATTTCTAAATTAAGACACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87627786 91 - 96509753 ATTCACTCCAAGCAGAGG-TAAGTCC-----ATACTGCCCCCCAGGCAGAAT----GAGACACACTG-GGGGCTCCAAGCATGATTTCTAAATTAAGACACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7119588 91 - 13098629 ATTCACTCCAAGCAGAGG-CAAGTCC-----ATACTGCCCCCCAGGCAGAAT----AAGACACACTG-GGGGCTCCAGGCATGATTTCTAAATTAAGACACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4086372 91 - 4483953 ATTCACTCCAAGTAGAGG-TAAGTCC-----ATACTGCCCCCCAGGCAGAAT----GAGACACACTG-GGGGCTCCAAGCATGATTTCTAAATTAAGACACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24716689 91 + 33263144 ATTCACTCCAAGCAGAGG-TAAGTCC-----ATACTGCTCCCCAGGCAGAAT----GAGACACACTG-GGGGCTCCAAGCATGATTTCTAAATTAAGACACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13997730 91 - 14338769 ATTCACTCCAAGCAGAGG-TAAGTCC-----ATACTGCCCCCCAGGCAGAAT----GAGACACACTG-GGGGCTCCAAGCATGATTTCTAAATTAAGACACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 935699 96 + 1946073 ATTCACTCCAAGCAGAGG-TAAGTCCATACAATACTGCTCCCCAGGCAGAAT----GAGACACATTG-GGGGCTCCAAGCATGATATCTAAATTAAGACACA i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5729807 94 + 108171978 ATTCATTCCTAGGAGAGC-TAAGTCC-TACAATACTACT-CCCATGCAAAAT----GAGACACAGTA-GGGGCTTCAAGCATAGTTTCTAAACTAAGGTATA i micMur3.chr7 I 12 C 0 s proCoq1.NW_012136747v1 5093872 95 - 6317780 ATTCACTGCTAGGAGAGC-TAAGTCCACACAATACTACT-CCCAAGCAAAAT----GAGACACAGTG-GGGGCTTCAAGCATGGTTTCTAAACCAAGATGTA i proCoq1.NW_012136747v1 I 12 C 0 s otoGar3.GL873526 36307076 94 - 42659167 ATTCACTCCTAAGAGAGG-TAAGTCCACAAGATACTGCTCCCCACACAAAGTGAGAGAGACGCAGTG-GGGGCTTCAAGCACAGC------ATCAAGATACA i otoGar3.GL873526 I 5 C 0 s canFam3.chr10 46108080 97 - 69331447 ATTCATTCCTAGGGGAGGTTAAGTCCACATAATACTGCTCCCCACACA-AAC----AAGACACATGGTGGGGCTTCAATCATGGTTTCTCAATCAAGGTAGG i canFam3.chr10 I 12 C 0 s dasNov3.JH570235 78714 88 + 1056298 ---------AAGGTTAAG-AAAATCCATGCAATGCTGCTCCCCACACTAAAT----GAGACACACAGTGGTGACTAAAGCAGGCTTTCTAAATCAGGATACA i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e mm10.chr15 82829477 283 + 104043685 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=2499940.000000 s hg38.chr22_GL383582v2_alt 94891 284 + 162811 -TTTTAAAAATAAG---GAATGGCCCAAACTTC----------AAAATCTTTTAATAGTAAATT-TT----TTATTATGGAAGGGAATAAAAACTA-TTTTTAAAGAACTCTAATAAGA-----A---------------------CCTCACATTTTTTGATACTCT-AAACTTGGGAAATAAATTATAAAAGGTATTATTAGTTT-TGGGACATGTTTTAAC---GG---AAAGTGGCCCAGATACAGAGCTT---GAA-CCTTTCACCAGACTTTGTCACTGTCTCAGAGGCAGGGCTCGCTGACTTGAGGTGGCAAACTGCAAGGACTGAGTCAACTAG s panTro5.chr22 28874776 284 + 37823149 -TTTTAAAAATAAG---GAATGGCCCAAACTTC----------AAAATCTTTTAATAGTAAATT-TT----TTATTATGGAAGGGAATAAAAACTA-TTTTTAAAGAACTCTAATAAGA-----A---------------------CCTCACATTTTTTGATACTCT-AAACTTGGGAAATAAATTATAAAAGGTATTATTAGTTT-TGGGACATGTTTTAAC---GG---AAAGTGGCCCAGATACAGAGCTT---GAA-CCTTTCAACAGCCTTTGTCACTGTCTCAGAAGCAGGGCTCGCTGACTTGAGGTGGCAAACTGCAAGGACTGAGTCAACTAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41149367 284 + 50109623 -TTTTAAAAATAAG---GAATGGCCCAAACTTC----------AAAATCTTTTAATAGTAAATT-TT----TTATTATGGAAGGGAATAAAAACTA-TTTTTAAAGAACTCTAATAAGA-----A---------------------CCTCACATTTTTTGATACTCT-AAACTTGGGAAATAAATTATAAAAGGTATTATTAGTTT-TGGGACATGTTTTAAC---GG---AAAGTGGCCCAGATACAGAGCTT---GAA-CCTTTCACCAGCCTTTGTCACTGTCTCAGAAGCAGGGCTCGCTGACTTGAGGTGGCAAACTGCAAGGACTGAGTCAACTAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3172109 284 + 4464012 -TTTTAAAAATAAG---GAATGGCCCAAACTTC----------AAAACCTTTTAATAGTAAATG-TT----TTATTATGGAAGGGAATAAAAACTA-TTTTTAAAGAACTCTAATAAGA-----A---------------------CCTCACATTTTTTGATACTCT-AAACTTGGGAAATAAATTATAAAAGGTATTATTAGTTT-TGGGACATGTTTTAAC---GG---AAAGTGGCCCAGATACAGAGCTT---GAA-CCTTTCACCAGCCTTTGTCACTGTCTCAGAGGCAGGGCTCGCTGACTTGAGGTGGCAAACTGCAAGGACTGAGTCAACTAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106668058 285 - 115148730 -TTTTAAAAATAAG---GAATGGCCCAAACTTC----------AAAATCTTTTAATAGTAAATT-TT----TTATTATGGAAGGGAATAAAAACTC-TTTTTAAAGAAGTCTAATAAGAACCTCA---------------------CCTCACATTTTTTGATACTCT-AAACTTGGGAAATAAATTAT-AAAGGTATTATTAGTTT-TGGGGCATG-TTTAAC--------AAAGTGGCCCAGATACAGAGCTT---GAA-CCTTTCACCAGCCTTTGTCACTGTCTCAGAGGCAGGGCTTGCTGACTTGAGGTGGCAAACTGCAAGGACTGAATCAACTAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84282840 282 + 92844088 -TTTTAAAAATAAG---GAATGGCCCAAACTTC----------AAAAT-TTTTAATAGTAAATT-TT----TTATTATGGAAGGGAATAAAAACTA-TTTGTAAAGAACTCTGACAAGA-----A---------------------CCTTACATTTTTTGATACTCT-AAACTTGGG-AATAAATTATAAAAGGCATTATTAGTTT-TGGGGCATGTTTAAAC---AG---AAAGTGGCCCAGATACAGAGCTT---GAA-CCTTTCACTAGCCTTTGGCATTGTCTCAGAGGCAGGGCTTGCTGACTTGAGGTGGCAAACTGCAAGGATTGAATCAACTAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87627877 282 - 96509753 -TTTTAAAAATAAG---GAATGGCCCAAACTTC----------AAAAT-TTTTAATAGTAAATT-TT----TTATTATGGAAGGGAATAAAAACTA-TTTGTAAAGAACTCTGACAAGA-----A---------------------CCTTACATTTTTTGATACTCT-AAACTTGGG-AATAAATTATAAAAGGCATTATTAGTTT-TGGGGCATGTTTAAAC---AG---AAAGTGGCCCAGATACAGAGCTT---GAA-CCTTTCACTAGCCTTTGGCATTGTCTCAGAGGCAGGGCTTGCTGACTTGAGGTGGCAAACTGCAAGGATTGAATCAACTAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7119679 282 - 13098629 -TTTTAAAAATAAG---GAATGGCCCAAACTTC----------AAAAT-TTTTAATAGTAAATT-TT----TTATTATGGAAGGGAATAAAAACTA-TTTGTAAAGAACTCTGACAAGA-----A---------------------CCTTACATTTTTTGATACTCT-AAACTTGGG-AATAAATTATAAAAGGCATTATTAGTTT-TGGGGCATGTTTAAAC---AG---AAAGTGGCCCAGATACAGAGCTT---GAA-CCTTTCACTAGCCTTTGGCATTGTCTCAGAGGTAGGGCTTGCTGACTTGAGGTGGCAAACTGCAAGGACTCAATCAACTAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4086463 282 - 4483953 -TTTTAAAAATAAG---GAATGGCCCAAACTTC----------AAAAT-TTTTAATAGTAAATT-TT----TTATTATGGAAGGGAACAAAAACTA-TTTGTAAAGAACTCTGACAAGA-----A---------------------CCTTACATTTTTTGATACTCT-AAACTTGGG-AATAAATTATAAAAGGCATTATTAGTTT-TGGGGCATGTTTAAAC---AG---AAAGTGGCCCAGATACAGAGCTT---GAA-CCTTTCACTAGCCTTTGGCATTGTCTCAGAGGCAGGGCTTGCTGACTTGAGGTGGCAAACTGCAAGGACTGAATCAACTAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24716780 282 + 33263144 -TTTTAAAAATAAG---GAAGGGCCCAAACTTC----------AAAAT-TTTTAATAGTAAATT-TT----TTATTATGGAAGGGAATAAAAACTG-TTTATAAAGAACTCTGACAAAA-----A---------------------CCTTACATTTTTTGATACTCT-AAACTTGGG-AATAAATTATAAAAGGCATTATTAGTTT-TGGGGCATGTTTAAAC---AG---AAGGTGGCCCAGATACAGAGCTT---GAA-CCTTTCACTAGCCTTTGTCATTGTCTCAGAGGCAGGGCTTGCTGACTTGAGGTGGCAAACTGCAAGGACTGAATCAACTAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13997821 282 - 14338769 -TTTTAAAAATAAG---GAATGGCCCAAACTTC----------AAAAT-TTTTAATAGTAAATT-TT----TTATAATGGAAGGGAATAAAAACTA-TTTGTAAAGAACTCTGACAAGA-----A---------------------CCTTACATTTTTTGATACTCT-AAACTTGGG-AATAAATTATAAAAGGCATTATTAGTTT-TGGGGCATGTTTAAAC---AG---AAAGTGGCCCAGATACAGAGCTT---GAA-CCTTTCACTAGCCTTTGGCATTGTCTCAGAGGCAGGGCTTGCTGACTTGAGGTGGCAAACTGCAAGGACTGAATCAACTAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 935795 283 + 1946073 -TTTTAAAAATAAG---GAATGGCCCAAACTTG----------AAAATCTTTTAATAGTAAATT-TT----TTATTATGGAAGGGAATAAAAACTA-TTCGTAAAGAACTCTGACGAAA-----A---------------------CCTCACATTTTTTGATACTCT-AAACTTGGG-AATAAATTATAAAAGGTATTATTAGTTT-TGGGGCATGTTTAAAC---AG---AAAGTGGCCCAGATACAGAGCTT---GAA-CCTTTCGCCAGCCTTTGTCACTGTCTCAGAGGCAGGGCTTGCTGACTTGAGGTGGCAAACTGCAAGGACTGAATCAACTAG i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5729901 283 + 108171978 -TTTTTCAAACAAG---CAACAGCCCAAACTTCTGATGACAGAATGGTCTTTTAATAGTGAATT-TTCCATTTATCAAGGAGGGGAATAAAAACTACTTTTTAAGAAACTCAGACAAGA-----A---------------------TCTTACACTTCTTGGTACTAT-AAACTTGGGAAATAAATTGTAAAATGTAT---TAGTTT-TGGGGCATGTTT------------AAAGCGG-CCAGACACCCAACCT---GAA-CCTTTCACCAGTCC------CTGTCTCAGAGGCAGGGCTTGATGACTTGAGGTGGCAAACTACAGGGGCTGAATCAACTAA i micMur3.chr7 C 0 I 38 s proCoq1.NW_012136747v1 5093967 283 - 6317780 -TTTTTCAAACAAG---CAACAGCCCAAACTTCTGATGACAGAATGATCTTTTAATAGTGAATT-TTCCATTTATTAAGGAGGGGAATAAAAGCTACTTTTTAAGAAACTCAGGCAAAA-----A---------------------TCTTGTACTTCTTGGTACTAT-AAACTTGGGAAATAAATTATAAAATGATT---TAGTTT-TGGGGCATGTTT------------AAAGCGG-TCAGACACCCAACCT---GAA-CCGTTCACCAGTCC------CTGTCTCAGAGGCAGGGCTTGATGACTTGAGGTGGCAAACTACAGGGGCTGAATCAACTAA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36307170 287 - 42659167 -TTTTTCAAATAAG---CAACAGTCTAAACTTCTGATGA-GGTAAGATCTTTTAATAGTGAATT-TTCCA-TTATTAAGGAAGGAAATAAGACCTACGTTTTAAGGAACTCTGACAAGA-----A-----------------------TTACACTTCTTGTTAATGT-AAACTTGGGAAATACATTA-GAAATATATTAGTAGTTT-GGGGGGATGTTTAAAC---AG---AAAGTGG-CCAGACACCTAATCT---GAA-TCTTCCACCAGCCC------CTGTCTCAGAGATAGGGCTTGATGGCCTAAGGTGGCAAATTGCAAGGGCTGAATCAACTAC i otoGar3.GL873526 C 0 I 1 s mm10.chr15 82829760 283 + 104043685 -TTTTTCAAATAGA---TAACATCTTAAACTGACAATGGAAGAGAAAT-TTTCATT--TAATTTCTT----TTAATAGAAAAAAGAGTAAAAATTA-------AGCAACTCTAACAAAA-----ACAAAAAAACAAAACATAAAATCCTTATATTTCTAGACACCAG-AAACTTGTC-AATAAATTACAAGATGTCT---TAGTTT-CTGGGCATATTTTAAA---AA---A--------CATTCATGCAGCCT----AG-CCTTTCACAAG----------TGTCT-AGAAGCAGTGTTTGGTGACTTGAAGTGGCAAACTACAGTGGCTAAATCAACTAG i mm10.chr15 I 283 I 1 s canFam3.chr10 46108177 274 - 69331447 -TTTTTCGAACAAGCAACAACAGCCCAATCTTT----------TAGAT--------AGTGAAAT-TTTCATTTACTATTAAAGAGAATAAG-GTTA-TTTTTAAGAA-----------------A---------------------CCGGACATTTCT-GATATTGT-AATCTTGGGAAATAGATTATAAAATGTATTCTTAGTTT-TGGGACATGTTTAAAC---AATACGAAGTGG-CCGAACACCCTTCCCTCCAGT-CATTTCACCAACCCTTGTCACTGTCTCAGAGGCAGGGCTCGCTGAGTGGAGGCGGCAAATCGCAGAAACAAAATCACCTAT i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 78802 300 + 1056298 TTTTTTCAAATAAG---CAACAGCCCAGTCTTTTCATGATGAAATGATCTCTTTATAGTGATTT-TTTCATTTATTATATAGGGGAATAAAAGTTA-TTTTTTAAA----TGGACAAGA-----A---------------------TCCTATATTTCTTGATAAAGTAAAACTTGGAAAATAAATTATAATGTCGATTATTTCTTTCTTGGACATGTTTAAACCATGG---AAAATGG-TAAAACATTCACCCT---GAGTCCTTGCACTAGCCCTGTTCACTGTCTAAGAGGCAGGGCTGGCTGACTTGAGATGGTGAGTTGCAGGGGCTGAATCACCTCA i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=314730.000000 s hg38.chr22_GL383582v2_alt 95175 53 + 162811 CGTTGTTTAATCC---TTATCTGAGGGAAGCTTT-AAGGGAGCCTTC--TCCAAGCCTG s panTro5.chr22 28875060 53 + 37823149 CGTTGTTTAATCC---TCATCTGAGGGAAGCTTC-AAGGGAGACTTC--TCCAAGCCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41149651 53 + 50109623 CGTTGTTTAATCC---TCATCTGAGGGAAGCTTC-AAGGGAGACTTT--TCCAAGCCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3172393 53 + 4464012 CGTTGTTTAATCC---TCATCTGAGGGAAGCTTC-AAGGGAGACTTC--TCCAAGCCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106668343 53 - 115148730 AGTTGTTTAATCC---TCATCTGAGGGAAGCTTC-AAGGGAGACTTC--TGCAAGCCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84283122 55 + 92844088 AGTTGCTTAATCC---TCATCTGAGGGAAGCTTC-ACGGGAGACTTCTATGCAAGCCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87628159 55 - 96509753 AGTTGCTTAATCC---TCATCTGAGGGAAGCTTC-ACGGGAGACTTCTATGCAAGCCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7119961 55 - 13098629 AGTTGCTTAATCC---TCATCTGAGGGAAGCTTC-ACGGGAGACTTCTATGCAAGCCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4086745 55 - 4483953 AGTTGCTTAATCC---TCATCTGAGGGAAGCTTC-ACGGGAGACTTCTATGCAAGCCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24717062 55 + 33263144 AGTTGCTTAATCC---TCATCTGAGGGAAGCTTC-ACGGGAGACTTCTATGCAAGCCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13998103 55 - 14338769 AGTTGCTTAATCC---TCATCTGAGGGAAGCTTC-ACGGGAGACTTCTATGCAAGCCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 936078 55 + 1946073 AGTTGTTTAGTCC---TCATCTGAGGGAAGCTTC-CCGGGAGACTTCTATGCAAGCCTG i colAng1.NW_012115588v1 C 0 C 0 s proCoq1.NW_012136747v1 5094250 37 - 6317780 --------GAGCC---TTATCTGAGGGATGTTCC-AAGGGAGAAGTCTA---------- i proCoq1.NW_012136747v1 C 0 I 1 s otoGar3.GL873526 36307458 39 - 42659167 ---------AGCCATTTAATCTGAGGGATGCTCC-AAGGGAGAAGTCTA---------- i otoGar3.GL873526 I 1 I 1 s mm10.chr15 82830044 46 + 104043685 AGCCATCAAATCC---TCATCTGAGGGAGGCTGCAAAGGAAGAATACTG---------- i mm10.chr15 I 1 I 1 s canFam3.chr10 46108452 45 - 69331447 AGCACTTTAATCC---CAGACTGACGGAAGATCC-GAGGGAGAATTCTG---------- i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 79102 33 + 1056298 -----------------CAGCGGAAGGAGGCTCT-CTGAGTGAATTT--TGCA------ i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e micMur3.chr7 5730184 38 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=4796713.000000 s hg38.chr22_GL383582v2_alt 95228 523 + 162811 ATGCCTGCTCATTCACAGAAAGGCTCTTTCTTATGAGATATAACAGCAACCTGAATCATCATCCTGTTTAATTAGCA---TCTCAGAGCAGCCTCAGAAC---------------ACCAAAGCAACTGGGTCACAGTAGTATTATAGCACACTGATGACA---ACTGGTTTTGTTCAAGCCTTG----CAGATTAC-----CCTCCACTACTGTGCCTAAGACGGCTCTTATCCAGCATGGCACACACTTCTGCTCATGCTCACAAtatttacttactcatgtttgtccatctcccctaaactgtgagacttgttcttgcacccccca-aggactggcacaccataggcactgt-aaatgtgggctgatg----gaatgaatGCAATGTCTGACAAACTTGAGAGCCTGAAGAC-AACTAATGAGGATA--CTCTTCA--ATGAGTTACAAAACTGATGCTGGTGGAGCTTGGAGAATGTGGAACAAGGTATGTGTTCATTTTTGGCCACCAGCAAAAAGTTTTTTGT-CCTTTTAATTAT-----GCCTCCTACATCTAGGATGGAAGC s panTro5.chr22 28875113 519 + 37823149 ATGCCTGCTCATTCACAGAAAGGCTCTTTCTTATGAGATATAACAGCAACCTGAATCATCACCCTGTTTAATTAGCA---TCTCAGAGCAGCCTCAGAAC---------------ACCAAAGCAACTGGGTCACAGTAGTATTATAGCACACTGATGACG---ACTGGTTTTGTTCAAGCCTTG----CAGATTAC-----CCTCCACTACTGTGCCTAAGACGGCTCTTATCCAGCATGGCACACACTTCTGCTCATGCTCACAGTA----CTTACTcatgtttgtccatctcccctaaactgtgagacttgttcttgcaccctcca-aggactggcacaccataggcactgt-aaatgtgggctgatg----gaatgaTTGCAATGTCTGACAAACTTGAGAGCCTGAAGAC-AACTAATGAGGATA--CTCTTCA--ATGAGTTACAAAACTGATGCTGGTGGAGCTTGGAGAATGTGGAACAAGGTATGTGTTCATTTTTGGCCACCAGCAAAAAGTTTTTTGT-CCTTTTAATTAT-----GCCTCCTACATCTAGGATGGAAGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41149704 523 + 50109623 ATGCCTGCTCATTCACAGAAAGGCTCTTTCTTATGAGATATAACAGCAACCTGAATCATCACCCTGTTTAATTAGCA---TCTCAGAGCAGCCTCAGAAC---------------ACCAAAGCAACTGGGTCACAGTAGTATTATAGCACACTGATGACG---ACTGGTTTTGTTCAAGCCTTG----CAGATTAC-----CCTCCACTACTGTGCCTAAGACGGCTCTTATCCAGCATGGCACACACTTCTGCTCATGCTCACAGtatttacttactcatgtttgtccatctcccctaaactgtgagacttgttcttgcaccctcca-aggactggcacaccataggcactgt-aaatgtgggctgatg----gaatgaTTGCAATGTCTGACAAACTTGAGAGCCTGAAGAC-AACTAATGAGGATA--CTCTTCA--ATGAGTTACAAAACTGATGCTGGTGGAGCTTGGAGAATGTGGAACAAGGTATGTGTTCATTTTTGGCCACCAGCAAAAAGTTTTTTGT-CCTTTTAATTAT-----GCCTCCTACATCTAGGATGGAAGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3172446 523 + 4464012 ATGCCTGCTCATTCACAGAAAGGCTCTTTCTTATGAGATATAACAGCAACCTGAATCATCACCCTGTTTAATTAGCA---TCTCAGAGCAGCCTCAGAAC---------------ACCAAAGCAACTGGGTCACAGTAGTATTATAGCACACTGATGACG---ACTGGTTTTGTTCAAGCCTTG----CAGATTAC-----CCTCCACTACTGTGCCTAAGACGGCTCTCATCCAGCATGGCACACACTTCTGCTCATGCTCACAATATTTACTTACTCATGTTTGTCCATCTCCCCTAAACTGTGAGACTTGCTCttgtacccccca-aggactggcacaccataggcactgt-aaatgtgggctgatg----gaatgaatGCAATGTCTGACAAACTTGAGAGCCTGAAGAC-AACTAATGAGGATA--CTCTTCA--ATGAGTTACAAAACTGATGCTGGTGGAGCCTGGAGAATGTGGAACAAGGTATGTGTTCATTTTTGGCCACCAGCAAAAAGTTTTTTGT-CCTTTTAATTAT-----GCCTCCTACATCTAGGATGGAAGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106668396 538 - 115148730 ATGCCTGCTCATTCACAGCAAGGTTCTTTCTTATGAGATATAACAGCAACCTGAATAATCACCCTGTTTAACTAGCA---TCTCAGAGCAGCTTCTGGGTCATAGTAGTATTGTGACCAAAGCAACTGGGTCATAGTAGTATTACAGCACCCTGATGACA---ACTGGTTTTGTTCAAGCCTTG----CAGATTAC----TCTTCCACTACTGTGCCTAAGACGGCTCTTATCCAGCATGGCACACACTTCTGCTCATGCTCACAATATTCACTTACTcatgtttgtccacctcccctaaactgtgagacttgttcttgcaccc-cca-aggactggcacaccataggcactgt-aaatgtgggctgatg----gaatgaatGCAACATCTGACAAACTTGAGAGCCTGAAGAC-AACTAATGAGGATA--CTCTTCA--GTGAGTTACAAAACTGATGCTGGTGGAGCTTGGAGAATGTGGAACAAGGTATGTGTTCATTTTTGGCCACCAGCAAGAAGTTTTTTGT-CCTTTTAATTAT-----GCCTCCTACGTCTAAGATGGAAGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84283177 510 + 92844088 ATGCCTGCTCATTCACAGAAAGGCTCTTTCTTATGAGATATAACAGCAACCTGAATAATCACCCTGTTTAATTAGCA---TCTCAGAGCAGCCTCAGAAC---------------GCCAAAGCAACTGGGTCATAGTAGTATTACAGCACATTGATGACG---ACTGGTTTTGT---------------AGATTAC----TCTTCCACTACTGTGCCTCAGATGGCTCTTATCCAGCATGGCACACACTTCTGCTCATGCTCACAGtatttacttactcatgtttgtccacctcccttaaactgtgagacttgttcttgcaccc-cca-gggactggcacaccacaggcactgt-aaatgtgggctgatg----gaatgaatGCAATGTCTGACAAACTTGAGAGCCTGAAGACAAACTAATGAGGATA--CTCTTCA--ATGAGTTACAAAACTGATGCTGGTGGAGCTTGGAGAATGTGGAACAAGGTATGTGTTCATTTTTGGCCACCAGC---AAGTTTTTTGT-CCTCTCAATTAT-----GCCTCCTACATCTAGGATGGAAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87628214 510 - 96509753 ATGCCTGCTCATTCACAGAAAGGCTCTTTCTTATGAGATATAACAGCAACCTGAATAATCACCCTGTTTAATTAGCA---TCTCAGAGCAGCCTCAGAAC---------------GCCAAAGCAACTGGGTCATAGTAGTATTACAGCACATTGATGATG---ATTGGTTTTGT---------------AGATTAC----TCTTCCACTACTGTGCCTCAGATGGCTCTTATCCAGCATGGCACACACTTCTGCTCATGCTCACAGTATTTACTTACTCATGTTTGTCCACCTCCCTTAAACTGTGAGacttgttcttgcaccc-cca-gggactggcacaccacaggcactgt-aaatgtgggctgatg----gaatgaatGCAATGTCTGACAAACTTGAGAGCCTGAAGACAAACTAATGAGGATA--CTCTTCA--ATGAGTTACAAAACTGATGCTGGTGGAGCTTGGAGAATGTGGAACAAGGTATGTGTTCATTTTTGGCCACCAGC---AAGTTTTTTGT-CCTCTCAATTAT-----GCCTCCTACATCTAGGATGGAAGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7120016 510 - 13098629 ATGCCTGCTCATTCACAGAAAGGCTCTTTCTTATGAGATATAACAGCAACCTGAATAATCACCCTGTTTAATTAGCA---TCTCAGAGCAGCCTCAGAAC---------------GCCAAAGCAACTGGGTCATAGTAGTATTACAGCACATTGATGACG---ATTGGTTTTGT---------------AGATTAC----TCTTCCACTACTGTGCCTCAGATGGCTCTTATCCAGCATGGCACACACTTCTGCTCATGCTCACAGtatttacttactcatgtttgtccacctcccttaaactgtgagacttgttcttgcaccc-cca-gggactggcacaccacaggcactgt-aaatgtgggctgatg----gaatgaatGCAATGTCTGACAAACTTGAGAGCCTGAAGACAAACTAATGAGGATA--CTCTTCA--ATGAGTTACAAAACTGATGCTGGTGGAGCTTGGAGAATGTGGAACAAGGTATGTGTTCATTTTTGGCCACCAGC---AAGTTTTTTGT-CCTCTCAATTAT-----GCCTCCTACATCTAGGATGGAAGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4086800 513 - 4483953 ATGCCTGCTCATTCACAGAAAGGCTCTTTCTTATGAGATATAACAGCAACCTGAATAATCACCCTATTTAATTAGCA---TCTCAGAGCAGCCTCAGAAC---------------GCCAAAGCAACTGGGTCATAATAGTATTACAGCACATTGATGACG---ATTGGTTTTGT---------------AGATTAC----TCTTCCACTACTGTGCCTCAGATGGCTCTTATCCAGCATGGCACACACTTCTGCTCATGCTCACAAtatttacttactcatgtttgtccacctcccttaaactgtgagacttgttcttgcaccc-cca-gggactggcacaccacaggcactgt-aaatgtgggctgacg----gaatgaatGCAATGTCTGACAAACGTGAGAGCCTGAAGACAAACTAATGAGGATA--CTCTTCA--ATGAGTTACAAAACTGATGCTGGTGGAGCTTGGAGAATGTGTAACAAGGTATGTGTTCATTTTTGGCCACCAGCAAGAAGTTTTTTGT-CCTCTCAATTAT-----GCCTCCTACATCTAGGATGGAAGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24717117 513 + 33263144 ATGCCTGCTCATTCACAGAAAGGCTCTTTCTTATGAGATGTAACAGCAACCTGAATAACCACCCTGTTTAATTAGCA---TCTCAGAGCAGCCTCAGAAC---------------GCCAAAGCAACTGGGTCAGAGTAGTATTACAGCACATTGATGACG---ATTGGTTTTGT---------------AGATTAC----TCTTCCACAACTGTGCCTCAGATGGTTCTTATCCAGCATGGCACACACTTCTGCTCATGCTCACAATATTTACTTACTCATGTTTGTCCACCTCCCTTAAACTGTGAGacttgttcttgcaccc-cca-gggactggcacaccacaggcactgt-aaatgtgggctgatg----gaatgaatGCAATGTCTGACAAACTTGAGAGCCTGAAGACAAACTAATGAGGATA--CTCTTCA--GTGAGTTACAAAACTGATGCTGGTGGAGCTTGGAGAATGTGGAACAAGGTATGTGTTCATTTTTGGCCACCAGCAAGAAGTTTTTTGT-CCTCTCAATTAT-----GCCTCCTACATCTAGGATGGAAGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13998158 513 - 14338769 ATGCCTGCTCATTCACAGAAAGGCTCTTTCTTATGAGATATAACAGCAACCTGAATAATCATCCTATTTAATTAGCA---TCTCAGAGCAGCCTCAGGAC---------------GCCAAAGCAACTGGGTCATAGTAGTATTACAGTACATTGATGACG---ATTGGTTTTGT---------------AGATTAC----TCTTCCACTACTGTGCCTCAGATGGCTCTTATCCAGCATGGCACACACTTCTGCTCATGCTCACAATATTTACTTACTCATTTTTGTCCACCTCCCTTAAACTGTGAGActtgttcttgcaccc-cca-gggactggcacaccacagacactgt-aaatgtgggctgatg----gaatgaatGCAATGTCTGACAAACTTGAGAGCCTGAAGACAAACTAATGAGGATA--CTCTTCA--ATGAGTTACAAAACTGATGCTGGTGGAGCTTGGAGAATGTGGAACAAGGTATGTGTTCATTTTTGGCCACCAGCAAGAAGTTTTTTGT-CCTCTCAATTAT-----GCCTCCTACATCTAGGATGGAAGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 936133 511 + 1946073 ATGCCTGCTCATTCACAGAAAGGCTCTTTCTTATGAGATGTAACAGCAACCTGAATAATCACCTTGTTTAATTAGCA---TCTCAGAGCAGCCTCAGAAC---------------ACCAAAGCAACTGGGTCATAGTAGTATTACAGCACATTGATGATG---ATTGGTTTTGT---------------AGATTAC----TCTTCCACTACTGTGCCTCAGATGGCTCTTATCCAGCACGGCACACACTTCTGCTCATGCTCACAATATTTACTTACTCATGTTTGTCCACTTCCCTTAAACTGTGAGacttgttcttgcaccc-cca-gtgactggcacaccacagacactgt-aaatgtgggctgatg----ggatgaatGCAATGTCTGACAAACTTGAGAGCCTGAAGACAAACTAATGAGGATA--CTCTTCA--ATGAGTTACAAAACTGATGCTGGTGGAGCTTGGAGAATGTGGAACAAGG--TGTGTTAATTTTTGGCCATGAGCAGGAAGTTTTTTGT-CCTCTCAGTTAT-----GCCTCCTACATCTAGGATGGAAGT i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5730222 508 + 108171978 ATGCTTTGTCATTCACAGAAAGGCTCTTTCCTATGAGACATAACAGCGACCTGAATAATCACTCTGTTTAATGAGCA---CCTCACAGCAGCCTCAGAGT---------------GCCAAAGTATTTGGGCCAGAATGTTATTATCGTAC-----CGATG---ACTGGTTCTGTCCAAACCTTG----TAGATCACACACTTTGCTACTACTGTGTCCTGGATGACTTTTATCCAGTACTGCACACACTTTTGCTCATGCTTATAGTATTTACTTATTCATGTCCACCTATCTCCCCTAAACTGTGAGATTCATTCCTGCATCC-CCA-------GGCA---------CACTGT-AAATGTGGGCTGATG----GAATGAATTCAATGTCTGACAAATGTGAGAGCTTGGAGAC-AAATAATGAGGATA--CTCTTCAACATGAGTTAAAAAGCTGATGCTGGTAGAGCTTGGAGAATGTGGA-CAAGGCATGTGTTAATTTTTGCCCACCAGCAAGAGATTTTTTCC-CCTTTTAATTAT-----GCCTCCTATATCTAGGACAGAAGC i micMur3.chr7 I 38 C 0 s proCoq1.NW_012136747v1 5094288 517 - 6317780 ATGCTTCTTCATTCACAGAAACGCTCTTTCCTATGAGAT-TAACAGTGACCTGAATAATCACTCTGTTTAACGACCA---CCTCACTGCAGCCTCAGAGT---------------GCCAAAGCATTTGGGTCAGAGTATTATTATTGCAT-----CGATGACTACTGGTTCTGTCCAAGCCTTG----TAGATCACACACTTTGCCACTACTGTGCCCTGGATGGCTTTTATCCAGCACTCCACACACTTTTGCTTGTGCTTACAGTATTTACTTATTCATGTCCATCCATCTCCCCTAAACTGTGAGattcattcttgcatcc-ccaagggcctggca---------cactgt-aaatgtgggctgatg----gaatgaatGCAATGTCTGACAAATTTGAGAGCTTGGAGAC-AACTGATGAGGATA--CTCTTCAACATGAGTTAAAAAGCTGATGCTGGTAGATCTTGGAGAATGTGAA-CAAGGCATGTGTTAATTTTTGGCTAACAGCAAGACACTATTTTC-CCTTTTAATTAT-----GCTTCCTGTATCTAGGACAGAAGC i proCoq1.NW_012136747v1 I 1 I 760 s otoGar3.GL873526 36307498 517 - 42659167 ATGCCTCTTCATTCACAGAAAAGCTCTTT-CTATGAGCTATGACAGCGACCCAAATCATCACTCTGTTTAATGAGCATCTTCTCAGAGCAGCCTCAAAGC---------------ACCAAAGCACTTGGGTCACAGTGTTATCAGCGCAC-----TGACA---ACTGGTTCCGTTCAAGCCTCG----CAGATTATACACTCTGCCACTCCTGTGCCCTGGATGGCTTTTATCCAGCACCGCACACATTCCTGCTCATGCCTTCAGCATTTACTTATTCACGTGTATCCATCTCCGATAAAC--TGAGattcatttttgcatcc-cca-gggcccaaca---------cacggt-aagtgcgggctcatggaatgaatgaatGCAATGCTGGACAGAC-TGACAGCTGTGAGAT-AACTAACGAGGCTA--CTCTTCACGAAAAGTTAAGAAGCTGATGCTGGTAGAGCACGGAGAACGTGGAGTAAGATATGTATTAATTTTTGGCTATCAGCAAGAG-TTTTTTTC-CCTTTTAACTAT-----GCCTCCTATATCTAGGACAGAAGG i otoGar3.GL873526 I 1 C 0 s mm10.chr15 82830091 417 + 104043685 ATAACTCTTCACGCCCACAACAACATTTCCCTCTGCGAGCTAACAGTGACCTGAATAAGC----TGCCTAA-GAACA---TCGCTGAGCAGCCTC-GAGC---------------ACTGCAGCAGTTGGG--------------CAGTGCTTCGATACCG---ATCAATTCTGAGCAAGCCTTG---TCAG----C--------------CTGTATCCTAGCT--------TTCAGCACTGCATTC--TTTTGTTCATGCCTACAGTACTTAC-----------------------------------------TCTAGCACCC-CT--GGACCAGGCA---------CACTGA-AAACACAGGCTGATG----GAAAGAATACAAGG---AATACACATTAGAGCCTTAAAGAAAACTAATGAAGTTGACTTTTTCAATATTCATTAAAAAGCTGATGCTTGGGGA--------AATGTAGGAAAA-----GTATTCATCTTTGGCTACCAGCAAGATGTTTATTCT--CTCTTAATTAT-----ACCTCCTATATCTAGGGCAGAAAC i mm10.chr15 I 1 I 1 s canFam3.chr10 46108497 507 - 69331447 ATGCCTCTTCATTCACAGAAAGGCGCTTTCCTGTGAGATGTAACTGTGACCTGAATAATC--------------GCA---TCTCAAAGCAGCCT-GGCAC---------------GCCGAAGCATTTGGGTCAGAGTATTATT----TGTGTTGATGATG---ATCAG-TCTGCTGGGGGCTCG----ACCATCACTCGTACTGCCTCTACGGCGCCCGAGATGGCTCTTACCGTGCACTGCACATGCTTTTGCTCATGCT---GTTATTTACTTACTCATGTTTGTCCACCTCCC-TGAACTGCATGACTCACTCTTGTGTCC-CCA-GGGCCCAGGACACCGTTGGAAATGT-GGATGTGGGCTGATG----GAGTGACTGTGATGTGCAACAAACCTGAGCGCCTGAGAA--AACGAACAAGGCTA--CTCTGCA--AC-AGTTCTACTGCGGATGCTGGCAGAGCTTGGAGAATGTGGAACAAGGTATGTACTCATTTCTGGCCACCAGCAAGAGCTCTTTTCTTCCTTTTAATTATTGTCCTCCTCCTATATCTAGGACGGAAGC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 79135 513 + 1056298 -TGCCTCTTCATTCAT-GAAAGGTTCTTTCCTATGAGATGAAACAGGGACCTGAATAACTGCTCTGCTTAATGTGCA---CCCCAGAGCAGCCGCAGAGC---------------ACTCAAGCATTTGGGTCAGAGTGTGATTAATG-----TGATGATG---ATCGGATCTGTTTGAGCCTTACACTCGGACCATACACTTGGGTACTACTGTGTTGAGGGTGGCCTTTTGCCAGCATTTCATATGCTTTTCCTCATGTTTACAGTATGTCTGTAATCATATTTGTCTACCTCCC-TAACCTGAGA-----ATCATTGTATCC-CC--GGGTCTGGCTCACCGTAGGATATGTAAAATGAGAGCTGTTG----GAATGAACGCAATGTCTGGCAAATGTGAGAGCTTGGCGAA-AATAAAAGAGGCTG--CTCTTCAATATAATTTTAAAAGCTGACAGTGGTAGAGCTTGGATAATGTGGAACAAAG--GGTGTTAATTTTTGGCTACCA-----CAGTTTTTTTT-TCTTTTAATTAT-----GTCTCCTATAGCTAGGCCAGAAGT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=10035.000000 s hg38.chr22_GL383582v2_alt 95751 1 + 162811 C s panTro5.chr22 28875632 1 + 37823149 C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41150227 1 + 50109623 C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3172969 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106668934 1 - 115148730 C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84283687 1 + 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87628724 1 - 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7120526 1 - 13098629 C i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4087313 1 - 4483953 C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24717630 1 + 33263144 C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13998671 1 - 14338769 C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 936644 1 + 1946073 C i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5730730 1 + 108171978 C i micMur3.chr7 C 0 I 86 s otoGar3.GL873526 36308015 1 - 42659167 T i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46109004 1 - 69331447 C i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 79648 1 + 1056298 C i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e mm10.chr15 82830508 1 + 104043685 I e proCoq1.NW_012136747v1 5094805 760 - 6317780 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=608283.000000 s hg38.chr22_GL383582v2_alt 95752 80 + 162811 GCTGTCCTCCCAGCTATCAATGCCAACTACGTGGCAGCT--AGATGGGCTACAT---ACAAGG-----AGCTA-C-CCTTCAAGGC------------CCTGTG s panTro5.chr22 28875633 80 + 37823149 GCTGTCATCCCAGCTATCAATGCCAACTACGTGGCAGCT--AGATGGGCTACAT---ACAAGG-----AGCTA-C-CCTTCAAGGC------------CCTGTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41150228 80 + 50109623 GCTGTCATCCCAGCTATCAATGCCAACTACGTGGCAGCT--AGATGGGCTACAT---ACAAGG-----AGCTA-C-CCTTCAAGGC------------CCTGTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3172970 80 + 4464012 GCTGTCATCCCAGCTATCAATGCCAACTACGTGGCAGCT--AGATGGGCTACAT---ACAAGG-----AGCTA-C-CCTTCAAGGC------------CCTGTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106668935 80 - 115148730 TCTGTCATCCCAGCTATCAATGCCAACTACGTGGCAGCT--AGATGGGCTACAT---ACAAGG-----AGCTA-C-CCTTCAAGGC------------CCTGTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84283688 82 + 92844088 TCTGCCATCCCAGCTATCAATGCCAACTACGTGGCAGCTAGAGACGGGCTACAT---ACAAGG-----AGCTA-C-CCTTCAAGGC------------CCTGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87628725 82 - 96509753 TCTGCCATCCCAGCTATCAATGCCAACTACGTGGCAGCTAGAGACGGGCTACAT---ACAAGG-----AGCTA-C-CCTTCAAGGC------------CCTGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7120527 80 - 13098629 TCTGCCATCCCAGCTATCAATGCCAACTACGTGGCAGCT--AGACGGGCTACAT---ACAAGG-----AGCTA-C-CCTTCAAGGC------------CCTGTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4087314 81 - 4483953 TCTGCCATCCCAGCTATCAATGCCAACTACGTGGCAGCT--AGACGGGCTACAT---ACAAGG-----AGCTACC-CCTTCAAGGC------------CCTGTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24717631 80 + 33263144 TCTGCCATCCCAGCTATCAATGCCAATTACGTGGCAGCT--AGACGGGCTACAT---ACAAGG-----AGCTA-C-CCTTCAAGGC------------CCTGTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13998672 80 - 14338769 TCTGCCATCCCAGCTATCAATGCCAACTACGTGGCAGCT--AGACGGGCTACAC---ACAAGG-----AGCTA-C-CCTTCAAGGC------------CCTGTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 936645 80 + 1946073 TCTGCCATCCCAGCTATCAATGCCCACTACGCGGCAGCT--AGACGGGCTACAT---ACAAGG-----AGCTA-C-CCTTCAAGGC------------CCTGTG i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36308016 95 - 42659167 GCTGCTGTCCTAGCTATGTATGACAATTATGTGGCAGCA--CTGAGGTCCACATACAACAAGA-----AGCTG-C-CCTTTAAGGcagcggttctcaacctgtg i otoGar3.GL873526 C 0 I 184 s mm10.chr15 82830509 85 + 104043685 TCTGTGAAGCTCACTATGTACTCCTGCTACATGACTGCA--ATATGGTCTCTAG---CCAAGGCATTACACTA-C-CCTTTATGGC------------CATGGG i mm10.chr15 I 1 C 0 s canFam3.chr10 46109005 80 - 69331447 TCTGCCACCAGAGCAATCTACTCTAGCTACGTGGCAGGG--ACATGGTTGACAT---ACAAGG-----AGCTA-C-CCTAGTAAGC------------CCTTGA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 79649 81 + 1056298 TCTGCCACCCGAACTATCTACCTGAACTCCACTGCAGCA--ATGTGGTCTACAT---CCAAAG-----AGCTA-TACCTTAAAGGC------------CCTGGG i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e proCoq1.NW_012136747v1 5094805 760 - 6317780 I e micMur3.chr7 5730731 86 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=38291.000000 s hg38.chr22_GL383582v2_alt 95832 4 + 162811 AGCA s panTro5.chr22 28875713 4 + 37823149 AGCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41150308 4 + 50109623 AGCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3173050 4 + 4464012 AGCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106669015 4 - 115148730 AGCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84283770 4 + 92844088 AGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87628807 4 - 96509753 AGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7120607 4 - 13098629 AGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4087395 4 - 4483953 AGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24717711 4 + 33263144 AGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13998752 4 - 14338769 AGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 936725 4 + 1946073 AGCA i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36308295 4 - 42659167 AGCA i otoGar3.GL873526 I 184 I 2 s mm10.chr15 82830594 1 + 104043685 ---A i mm10.chr15 C 0 C 0 s canFam3.chr10 46109085 4 - 69331447 AACA i canFam3.chr10 C 0 I 2 s dasNov3.JH570235 79730 4 + 1056298 AGCA i dasNov3.JH570235 C 0 I 2 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e proCoq1.NW_012136747v1 5094805 760 - 6317780 I e micMur3.chr7 5730731 86 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=290729.000000 s hg38.chr22_GL383582v2_alt 95836 28 + 162811 TTTCTTTGATGCAACTCTGCATCCTATC s panTro5.chr22 28875717 28 + 37823149 TTTCTTTGATGCAACtctgcatcctatc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41150312 28 + 50109623 TTTCTTTGATGCAACtctgcatcctatc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3173054 28 + 4464012 TTTCTTTGATGCAACTCTGCATCCTATC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106669019 28 - 115148730 TTTCTTTGATAAACCTCTGCATCCTATC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84283774 28 + 92844088 TTTCTTTGATGCAACTCTGCATCCTATC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87628811 28 - 96509753 TTTCTTTGATGCAACTCTGCATCCTATC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7120611 28 - 13098629 TTTCTTTGATGCAACtctgcatcctatc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4087399 28 - 4483953 TTTCTTTGATACAACTCTGCATCCTATC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24717715 28 + 33263144 TTTCTTTGATGCAACTCTGCATCCTATC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13998756 28 - 14338769 TTTCTTTGATGCAACtctgcatcctatc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 936729 28 + 1946073 TTTCTTTGATGCAACtctgcatcctatc i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5730817 28 + 108171978 TTTCTTTGATGCAACTCTGCATcttatc i micMur3.chr7 I 86 I 393 s otoGar3.GL873526 36308301 28 - 42659167 TTTCTTTGCTGCAACTCTCCCTCCTATC i otoGar3.GL873526 I 2 C 0 s mm10.chr15 82830595 19 + 104043685 ---------TGCAACTTTTTATCCCATT i mm10.chr15 C 0 C 0 s canFam3.chr10 46109091 28 - 69331447 TTTCTTTGATGTAACTCTGCATCCTATC i canFam3.chr10 I 2 C 0 s dasNov3.JH570235 79736 28 + 1056298 TGTCTTTAATAGAATTCTGCACCCCATC i dasNov3.JH570235 I 2 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e proCoq1.NW_012136747v1 5094805 760 - 6317780 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=1176065.000000 s hg38.chr22_GL383582v2_alt 95864 174 + 162811 AAGCTTC-TTAAAGACTACTTCAAAGTGTTAGCCAAAGCAATACATACATAGCCCTAGGTGTTTT-GGTCCTTACTTCCTTAGAGCTAGACGATCTCCTTACGTTTCTTCATGAAA-----------AGCTCA-TGAGACTGG-----CTGGAGAACCTT----TAACTTGCCAT-----------TAACACAAAGA--CTGAGGGAATG s panTro5.chr22 28875745 174 + 37823149 aagcttc-ttaaagactacttcaaagtgttagccaaagcaatacatacatagccctaggtgtttt-ggtccttacttccttagagctagatgatctccttacgtttcttcatgaaa-----------agctca-tgagactgg-----ctggAGAACCTT----TAACTTGCCAT-----------TAACACAAAGA--CTGAGGGAATG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41150340 174 + 50109623 aagcttc-ttaaagactacttcaaagtgttagccaaagcaatacatacatagccctaggtgtttt-ggtccttacttccttagagctagacgatctccttacgtttcttcatgaaa-----------agctca-tgagactgg-----ctggAGAACCTT----TAACTTGCCAT-----------TAACACAAAGA--CTGAGGGAATG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3173082 174 + 4464012 AAGCTTC-TTAAAGACTACTTCAAAGTGTTAGCCAAAGCAATACATACATAGCCCTAGGTGTTTT-GGTCCTTACTTCCTTAGAGCTAGACCATCTCCTTACGTTTCTTCATGAAA-----------AGCTCA-TGAGACTGG-----CTGGAGCACCTT----TAACTTGCCAT-----------TAACACAAAGA--CTAAGGGAATG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106669047 174 - 115148730 AAGCTTC-TTAAAGACTACTTCGAAGTGTCAGCCAAAGCAATACATACATAGCCCTAGGTGTTTT-GGTCCTTACTTCCTTAGAGCTAGACAATCTCCTTACGCTTCTTCATGAAA-----------AGCTCA-TGAGACCGG-----CTGGAGCACCTT----TAACTTGCCAT-----------TAACACAAAGA--CTCAGGGAATG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84283802 174 + 92844088 AAGCTTC-TTAAAGAGTACTTCGAAGTGTCAGCCAAAGCAATATGTACATAGCCCTAGGTGTTTC-GGTCCTTACTTCCTTATAGCTAGACAATCTCCTTATGCTTCTTCATGAAA-----------AGCTCG-TAAGACAGG-----CTGGAGCACCTT----TAACTTGCCAT-----------TTACACAAAGA--CTCAGGGAATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87628839 174 - 96509753 AAGCTTC-TTAAAGAGTACTTCGAAGTGTCAGCCAAAGCAATATGTACATAGCCCTAGGTGTTTC-GGTCCTTACTTCCTTATAGCTAGACAATCTCCTTATGCTTCTTCATGAAA-----------AGCTCG-TAAGACAGG-----CTGGAGCACCTT----TAACTTGCCAT-----------TTACACAAAGA--CTCAGGGAATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7120639 174 - 13098629 aagcttc-ttaaagagtacttcgaagtgtcagccaaagcaatatgtacatagccctaggtgtttc-ggtccttacttccttacagctagacaatctccttatgcttcttcatgaaa-----------aGCTCG-TAAGACAGG-----CTGGAGCACCTT----TAACTTGCCAT-----------TTACACAAAGA--CTCAGGGAATG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4087427 174 - 4483953 AAGCTTC-TTAAAGAGTACTTCGAAGTGTCAGCCAAAGCAATATGTACATAGCCCTAGGTGTTTC-GGTCCTTACTTCCTTATAGCTAGACAATCTCCTTATGCTTCTTCATGAAA-----------AGCTCG-TAAGACAGG-----CTGGAGAACCTT----TAACTTGCCAT-----------TTACACAAAGA--CTCAGGGAATG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24717743 174 + 33263144 AAGCTTC-TTAAAGAGTATTTCGAAGTGTCAGCCAAAGCAATATGTACATAGCCCTAGGTGTTTC-AGTCCTTACTTCCTTAGAGCTAGACAATCTCCTTATGCTTCTTCATGAAA-----------AGCTCG-TAAGACAGG-----CTGGAGCACCTT----TAACTTGCCAT-----------TTACACAAAGA--CTCAGGGAATG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13998784 173 - 14338769 aagcttc-ttaaagagtacttcgaagtgtcagccaaagcaatatgtacacagccctaggtgtttc-ggtccttacttccttatagctagacaatctccttatgcttcttcatgaaa-----------agctcgttaagacagg-----ctggagcacctt----taacTTGCCAT-----------TTACAC--AGA--CTCAGGGAATG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 936757 168 + 1946073 aagcttc-ttaaagagtacttcgaagtgtcagccaaagcaatatgtacatagccctagatgtttt-ggtccttacttccttagagctagacaatctccttatgcttcttcatgaaa-----------aGCTCA-TAAGACAGG-----CTGGAGCACTTT----TAACTTGCCAT-----------TTACACAA--------AGGGAATG i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36308329 172 - 42659167 AATCTTCTTTCAAGAGAACTTCAAGGTGTTGGTCAAAGTTGTAAGTGTACAACCCCGTATGTTTT-TGTTTTTGCTTCCTTAGAGCTAGACATGCTCCCTGTGTTTCGTCATGAAG---------------CC-CAAGACTGG-----TTACAGCACTTT---GCTGCCTGCCAT-----------TCCCCCAAAGA--TTTGGGAGGCA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82830614 183 + 104043685 AACTTAC-TTTCCAGAGGCTTTAAAGTGTTGGCCACGACAGAGTA--------------GGCTTT-AGTCT----TTTCCTGGAGCAAGATTATCTCCTGAGGTTTCTCTATCAAAGTTCTTATCTGAGAGCA-CAACGTATGTTGTCTTGGAGGATGGC----ACTCATGCCAGCCCTAGAACCATACCCTGAggg--ctggagagatg i mm10.chr15 C 0 I 35 s canFam3.chr10 46109119 171 - 69331447 AATTTTCTTTCAAGAGCACTTCAAGGTGTTGGCCAAAGCAATCCATATAAAACCCTGTATGTTTTGGGTCCTTGCTTCCTCAGAGCTA----ATCTCCTTATGTTCCCTCAC-AAA-----------AGCTCA-GGAGACCAG-----CTAGAGCGTTTTGCTGCTGTCTGCCAT-----------TCTC----AGA--TTCCAGAGACA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 79764 154 + 1056298 AAGTTTC-T----------TTCAAGGTGTTGGCTAAAGCAGTACATATAAAACCCGATATATTTT-G-------CTTCCTTAGAGCTGGACTATCTCCATATTCTTCCTCCTGAAA------------GCTCA-TG-GACTGG-----CTGGAATGCCTT---GCTGCTTACCAT---------------ACAAAGATTCTGAGGAAGTG i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e proCoq1.NW_012136747v1 5094805 760 - 6317780 I e micMur3.chr7 5730845 393 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=1481189.000000 s hg38.chr22_GL383582v2_alt 96038 233 + 162811 GGCTCTGGCACCAGCCTCTGGGACCTGCACCACGGCCCAG-TACC-A---------------------------------------------------------------------------------CCAAGG-CTTCCC---AGTCAACCTCAGAGGGACAGAGACTTG-TCCAGTTCTT----CTCAGGTCCA-TTTACTCAGTGCTACTCAAGTT--ATGGTACATG---GATTTAGAATCTGCACTTATGTCCTACAGCTGCTCCGGCAAAAGTGCCAGTTTCAGAAACTGAATCCATTAAATACACA-CTTAATCAATTATGATGT s panTro5.chr22 28875919 233 + 37823149 GGCTCTGGCACCAGCCTCTGGGACCTGCACCACAGCCCAG-TACC-A---------------------------------------------------------------------------------CCAAGG-CTTCCC---AGTCAACCTCAGAGGGACAGAGAGTTG-TCCAGTTCTT----CTCAGGTCCA-TTTACTCAGTGCTACTCAAGGT--ATGGTACATG---GATTTAGAATCTGCACTTATGTCCCACAGCTGCTCCAGCAAAAGTGCCAGTTTCAGAAACTGAATCCATTAAATACACA-CTTAATCAATTATGATGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41150514 233 + 50109623 GGCTCTGGCACCAGCCTCTGGGACCTGCACCACAGCCCAG-TACC-A---------------------------------------------------------------------------------CCAAGG-CTTCCC---AGTCAACCTCAGAGGGACAGAGAGTTG-TCCAGTTCTT----CTCAGGTCCA-TTTACTCAGTGCTACTCAAGGT--ATGGTACATG---GATTTAGAATCTGCACTTATGTCCCACAGCTGCTCCAGCAAAAGTGCCAGTTTCAGAAACTGAATCCATTAAATACACA-CTTAATCAATTATGATGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3173256 233 + 4464012 GGCTCTGGCACCAGCCTCTGGGACCTGCACCACAGCCCAG-TACC-A---------------------------------------------------------------------------------CCAAGG-CTTCCC---AGTCAACCTCAGAGGGACAGAGAGTTG-TCCAGTTCTT----CTCAGGTCCA-TTTACTCAGTGCTACTCAAGGT--ATGGTACATG---GATTTAGAATCTGCACTTATGTCCCACAGCTGCTCCAGCAAAAGCGCCAGTTTCAGAAACTGAATCCATTAAATATACA-CTTAATCAATTATGATGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106669221 230 - 115148730 GGCTCTGGCACCAGCCTCTGGGACCTGCACCACAGCCCAG-TACCAA---------------------------------------------------------------------------------CCAAGG-CTTCCC---AGTCAACCTCAGAGGGACAGAGAGTTG-TCCAGTTCTT----CTCAGGTCCA-TTTACTCAACGCTACTCAAGGT--ATGGTACATG---GATTTAGAAGCTGCACTTATGTCCCACAGCTGCTCCAGCGAAAGTGCCAGTTTCAGAAACTGAATCCATTAAATACA-----TAATCAATTATTATGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84283976 200 + 92844088 GGCTCTGGCACCAGCCTCTGGGA-CTGCACCACAGCCCAG-TACC-A---------------------------------------------------------------------------------CCAAGG-------------CAACCTCAGAGGGACAGAGAGTTG-ACCAGTTCTT----CTCAGGTCCA-TTTACTCCATGCTACTCAAGGT--ATGGTGCATG---GATTTAGAAGCTGCACTTATGTCCCACAGTTGCTCCAGCCAAAGTGCCAGTTTCAGAAACTGAATCCATT------------------------ATGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87629013 200 - 96509753 GGCTCTGGCACCAGCCTCTGGGA-CTGCACCACAGCCCAG-TACC-A---------------------------------------------------------------------------------CCAAGG-------------CAACCTCAGAGGGACAGAGAGTTG-ACCAGTTCTT----CTCAGGTCCA-TTTACTCCATGCTACTCAAGGT--ATGGTGCATG---GATTTAGAAGCTGCACTTATGTCCCACAGTTGCTCCAGCCAAAGTGCCAGTTTCAGAAACTGAATCCATT------------------------ATGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7120813 200 - 13098629 GGCTCTGGCACCAGCCTCTGGGA-CGGCACCACAGCCCAG-TACC-A---------------------------------------------------------------------------------CCAAGG-------------CAACCTCAGAGGGACAGAGAGTTG-GCCAGTTCTT----CTCAGGTCCA-TTTACTCCATGCTACTCAAGGT--ATGGTGCATG---GATTTAGAAGCTGCACTTATGTCCCACAGTTGCTCCAGCCAAAGTGCCAGTTTCAGAAACTGAATCCATT------------------------ATGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4087601 200 - 4483953 GGCTCTGGCACCAGCCTCTGGGA-CTGCACCACAGCCCAG-TACC-A---------------------------------------------------------------------------------CCAAGG-------------CAACCTCAGAGGGACAGAGAGTTG-ACCAGTTCTT----CTCAGGTCCA-TTTACTCCATGCTATTCAAGGT--ATGGTGCATG---GATTTAGAAGCTGCACTTATGTCCCACAGTTGCTCCAGCCAAAGTGCCAGTTTCAGAAACTGAATCCATT------------------------ATGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24717917 203 + 33263144 GGCTCTGGCACCAGCCTCTGGGA-CTGCACCACAGCCCAG-TACC-A---------------------------------------------------------------------------------CCAAGG-------------CAACCTCAGAGGGACAGAGAGTTG-ACCAGTTCTT----CTCAGGTCCA-TTTACTCCATGCTACTCAACGT--ATGGTGCATGAACGATTTAGAAGCTGCACTTATGTCCCACAGTTGCTCCAGCCAAAGTGCCAGTTTCAGAAACTGAATCCATT------------------------ATGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13998957 200 - 14338769 GACTCTGGCACCAGCCTCTGGGA-CTGCACCACAGCCCAG-TACC-A---------------------------------------------------------------------------------CCAAGG-------------CAACCTCAGAGGGACAGAGAGTTG-ACCAGTTCTT----CTCAGGTCCA-TTTACTCCATGCTACTCAAGGT--ATGGTGCACG---GATTTAGAAGCTGCACTTATGTCCCACAGTTGCTCCAGCCAAAGTGCCAGTTTCAGAAACTGAATCCATT------------------------ATGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 936925 200 + 1946073 GGCTCTGGCACCAGCCTCTGGGA-CTGCACCACAGCCCAC-TACC-A---------------------------------------------------------------------------------CCAAGG-------------CAACCTCAGAGGGACAGAGAGTTG-ACCAGTTCTT----CTCAGGTCCA-TTTACTCAATGCTACTCAAGGT--ATGGTGCATG---GATTTAGAAGCTGCACTTATGTCCCACAGTTGCTCCAGCAAAAGTGCCAGTTTCAGAAACTGAATCCATT------------------------ATGT i colAng1.NW_012115588v1 C 0 C 0 s proCoq1.NW_012136747v1 5095565 228 - 6317780 GGCTCTGGCACTAGCCTCTGGGACCTGCACTAGAGACCAG-TACC-A---------------------------------------------------------------------------------CCGAGG-CTTCTC---AGCCAACCTCTGAGAGCCAGAGAGATG-CCCAGTTCTT----TTCAGGTCCATTTTTTTCAATGCTACTAAAGGT---TAGTGCACA---GATTTCAAAGCTGCACTTATGTCCCCCAGCTGCCCTA------GGGCCAATTTTAGATTCTAAAACCATGAAATACACATTTTAATAAATTCTGGTGA i proCoq1.NW_012136747v1 I 760 I 3 s otoGar3.GL873526 36308501 229 - 42659167 GGCTCT-GTGCCAACCTCTGCAGCCTGTGTCAGAGCCCAG-CACC-A---------------------------------------------------------------------------------TCGATG-TGTCTC---AGCCAACCTCAGAGGACCAGAGAAATA--CCAGTTCCT----TTCAGGTCCATTTTTTTCAACGCTCCTGAAGGTGGATAGCGCACA---GACTTAAAAGCTGCACTAGTGTTCGACAGCTGTCCCG------GTGCCAATTTCAGATACTGAAACCATGAAATGCACATTTTAATAAATTCTGGTAG i otoGar3.GL873526 C 0 I 3 s mm10.chr15 82830832 301 + 104043685 ggtcctgagttcaattcccagcaaccacacggtggctcac-aacc-atctgtaatgagatctgactgtgacagtgtactcacattataaattaaataaaatctttTTTAAGAAGCAGCAGCAGCATAGCCCAAG-TGTCCCTCACATCCAACTCAGAGCGCCGAGGCAGGC-CACAGTACTTGATCTTCAGGCCCA-TTTGTTTGACGCTCT----GAT--A-GGTGCACA---GATGTACTAGTATTACTCAAGGCCCACAGCTGTTCTG---CAAGTGTCAATTTCAAAACCTGAATTCATTAAATCCGGGCCTCAA------------- i mm10.chr15 I 35 C 0 s canFam3.chr10 46109290 215 - 69331447 GGCT-TGGCAACAGCCTCTGGAACCCAAACCACAGTTCAG--AGC-A---------------------------------------------------------------------------------CCAAGG-CCTCAA---AGCCAACCCTGGAGGGCCAGAAAGATGCCCCAGTTCCT----CTCAGG--CA------------CTACGAGAGGT--GTAGTGAATG---GGCTTGAAAGGTGTACTTATGTCCCACTGCTTTTCTAGCAAAC---TCAATTTCAGAAAC--AATCTATTACATATGCCTCTTAATAAATTATGATAC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 79918 203 + 1056298 ---------------------------CGCCACAGCACAGGTACC-A---------------------------------------------------------------------------------CCAAGGGCTTCAC---TGCCAACTGACGAGTGTCAGAGAGGTG-CCTAGTTATT----CTTGGGTTCA-TTTAATTAATGCTACTAGATGT--GTATTCCATG---TATTTAAAAGGTGCACTTATGCCCAACTGCTGTTCCAGCAAAAGCATCAATTTTAAAGACAAAGTCTGTTAAATATGCCTCTTAA------ATGATGT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e micMur3.chr7 5730845 393 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=2347121.000000 s hg38.chr22_GL383582v2_alt 96271 249 + 162811 CAGTATGAAACATCAGCCAGC--------------CACTCACTGGCTAAGGGCTAATTGTGTGTACTTA-AGACAAAAGTTCCAGGCTTGACTAGCTTTTTAGAATAAATGTG----GTTGGTCT-AATGTGCATACTGTCCAGGTATGATG----------CAGCAC-AG-GGCTACTGGAG-AAAAAAACTGAGGGTGT-CAGCACACGTGTGAAAGCC--AAAAGTCACCAGGtcaattttatcatctgtaaaat--ggggataacagtatttgctttgccttc s panTro5.chr22 28876152 249 + 37823149 CAGTATGAAACATCAGCCAGC--------------CATTCACTGGCTAAGGGCTAATTGTGTGTACTTA-AGACAAAAGTTCCAGGCTTGACTAGCTTTTTAGAATCAATGTG----GTTGGTCT-AATGTGCATACTGTCCAGGTATGATG----------CAGCAC-AG-GGCTACTGGAG-AAAAAAACTGAGGGTGT-CAGCACACGTGTGAAAGCC--AAAAGTCACCAGGtcaattttatcatctgtaaaat--ggggataacagtatttgctttgccttc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41150747 249 + 50109623 CAGTATGAAACATCAGCCAGC--------------CATTCACTGGCTAAGGGCTAATTGTGTGTACTTA-AGACAAAAGTTCCAGGCTTGACTAGCTTTTTAGAATCAATGTG----GTTGGTCT-AATGTGCATACTGTCCAGGTATGATG----------CAGCAC-AG-GGCTACTGGAG-AAAAAAACTGAGGGTGT-CAGCACACGTGTGAAAGCC--AAAAGTCACCAGGtcaattttatcatctgtaaaat--ggggataacagtatttgctttgccttc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3173489 249 + 4464012 CAGTATGAAACATCAGCCAGC--------------CATTCACTGGCTAAGGGCTAATTGTGTGTACTTA-AGACAAAAGTTCCAGGCTTGACGAGCTTTTTAGAATAAATGTG----GCTGGTCT-AATATGCATACTGTCCAGGTATGATG----------CAGCAC-AG-GGCTACTGGAG-AAAAAAACTGAGGGTGT-CAGCACACGTGTGAAAGCC--AAAAGTCACCAGGtcaattttatcatctgtaaaat--ggggataacagtatttgctttgccttc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106669451 250 - 115148730 CAGTATGAAACATCAGCCAGC--------------CATTCACTGGCTAAAGGCTAATCGTGTGTACTCA-AGACAAAAGTTCCAGGCTTGACTAGCTTTTTAGAATAAATGTG----GTTGGCCT-AATGTGCATACTGTCCAGGCATGATA----------CAGCAC-AG-GGCTACTGGAGAAAAAAAACTGAGGCTGT-CAGCACATGTGTGAAAGCC--AAAAGTCACCAGGtcaattttatcatctgtaaaat--ggggataacagtatttgctttgccttc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84284176 249 + 92844088 CAGTATGAAACATCAGCCAGC--------------CATTCACTGGCTAATGGCTAATTGTGTGTACTTA-AGACAAAAGTCCCAGGCTTGACTAGCTTTTTAGAATAAATGTG----GTTGGTCT-AACGTGCATACTGTTCAGGTATGACA----------CAGCAC-AG-GGCTACTGGAG-GAAAAAACTGAGGGTGT-CAGCACATGTGTGAAAGCC--AAAAGTCACCAGGtcaattttatcacctgtaaaat--gtggataacagaatttgctttgccttc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87629213 249 - 96509753 CAGTATGAAACATCAGCCAGC--------------CATTCACTGGCTAATGGCTAATTGTGTGTACTTA-AGACAAAAGTCCCAGGCTTGACTAGCTTTTTAGAATAAATGTG----GTTGGTCT-AACGTGCATACTGTTCAGGTATGACA----------CAGCAC-AG-GGCTACTGGAG-GAAAAAACTGAGGGTGT-CAGCACATGTGTGAAAGCC--AAAAGTCACCAGGtcaattttatcacctgtaaaat--gtggataacagaatttgctttgccttc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7121013 249 - 13098629 CAGTATGAAACATCAGCCAGC--------------CATTCACTGGCTAATGGCTAATTGTGTGTACTTA-AGACAAAAGTCCCAGGCTTGACTAGCTTTTTAGAATAAATGTG----GTTGGTCT-AACGTGCATACTGTTCAGGTATGACA----------CAGCAC-AG-GGCTACTGGAG-GAAAAAACTGAGGGTGT-CAGCACATGTGTGAAAGCC--AAAAGTCACCAGGtcaattttatcacctgtaaaat--gtggataacagaatttgctttgccttc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4087801 249 - 4483953 CAGTATGAAACATCAGCCAGC--------------CATTCAATGGCTAACGGCTAATTGTGTGTACTTA-AGACAAAAGTCCCAGGCTTGACTAGCTTTTTAGAATAAATGTG----GTTGGTCT-AACGTGCATACTGTTCAGGTATGACA----------CAGCAC-AG-GGCTACTGGAG-GAAAAAACTGAGGGTGT-CAGCACATGTGTGAAAGCC--AAAAGTCACCAGGtcaattttatcacctgtaaaat--ggggataacagaatttgctttgccttc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24718120 249 + 33263144 CAGTATGAAACATCAGCCAGC--------------CATTCACTGGCTAACAGCTAATTGTGTGTACTTA-AGACAAAAGTCCCAGGCTTGACTAGCTTTTTAGAATAAATGTG----GTTGGTCT-AACGTGCATACTGTTTAGGTATGACA----------CAGCAC-AA-GGCTACTGGAG-GAAAAAACTGAGGGTGT-CAGCACATGTGTGAAAGCC--AAAAGTCACCAGGtcaattttatcacctgtaaaat--ggggataacagaatttgctttgccttc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13999157 249 - 14338769 CAGTATGAAACATTAGCCAGC--------------CATTCACTGGCTAACGGCTAATTGTGTGTACTTA-AGACAAAAGTCCCAGGCTTGACTAGCTTTTTAGAATAAATGTG----GTTGGTCT-AACGTGCATACTGTTCAGGTATGACA----------CAGCAC-AG-GGCTACTGGAG-GAAAAAACTGAGGGTGT-CAGCACATGTGTGAAAGCC--AAAAGTCACCAGGtcaattttatcacctgtaaaat--ggggataacagaatttgctttgccttc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 937125 249 + 1946073 CAGTATGAAACATCAGCCAGC--------------CATTCACTGGCTAACGGCTAATTGTGTGTACTTA-AGACAAAAGTCCCAGGCTTGACTAGCTTTTTAGAATAAATGTG----GTTGGTCT-AATGTGCATACTGTTCAGGTATGGCA----------CAGCAC-AG-GGCTACTGGAG-GAAAAAACTGAGGGTGT-CAGCACATGTGTGAAAGCC--AAAAGTCACCAGGtcaattttatcacctgtaaaat--ggggataacagaatttgctttgccttc i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5731238 246 + 108171978 CAGTATGAAACATCAGCCAGT--------------GATTAACTAGCTAAAGCCTAATCATGTGTACTTAAAGACCCAAGTTCCAGGTTTGACTGG-TTTTCAGAATAAATGTG----TATGGTCT-ACTGTAAATATTATCCAGGTGTGATA----------CAGCAC-AG-GGCTAATGGAG-AAATAAACTGGGGGTGT-CAGTACATACATGAAAGCC--AAAAGT---TGTAtcaattttgtcatctgtaaaat--aggcataacaatatttgctttgccttc i micMur3.chr7 I 393 C 0 s proCoq1.NW_012136747v1 5095796 246 - 6317780 CAGCATGAAACATCAGCCAGA--------------GATTAACTAGCTAAAGCCTAATTATGTGTACTTAAAGACCCAAGATCCAGGTTTGACTGG-TTTTCAGAATAAATGTG----GATGATCT-ACTGTAAATATTATCCAGGTGTGATG----------TAGCAC-AG-GGCTAATGGGG-AAAGAAACTGGGGGTGT-CAGCACATGCATGAAAGCG--AAAAGT---Tgcattaattttatcatctgtaaaat--aagtgtaacaatatttgctttgccttc i proCoq1.NW_012136747v1 I 3 I 164 s otoGar3.GL873526 36308733 239 - 42659167 TAGCATGAAACATCAGTCAGC--------------CATTAACTGGCTAAAG---AAGCGTGT--------AAACAAAAGTTCCAGGTTTGACTGGCTTTTTAGAATAAATGTT----GTGGGTGT-AATATAAATATTATTCCAGTATAATG----------CAGCAC-AGTGGCTAGTGGAT-AAAGAGACT-GAGGTGT-CAGCACATGCATGAAAGTC--AAAAGTCACTACAttaattttatcatctgtataat--gggagcagcaatatttgtttcgacttc i otoGar3.GL873526 I 3 C 0 s mm10.chr15 82831133 234 + 104043685 AAGTACAAGAAGTCAGCTAGCAGTCACGTTAGCAGCACTCACTGGTTAAAACCCACTTTTGT--ACTTA-ACACAAAGTCTCCAGGTTTGATTGACACTTTAGACTAAACATG----GTTGGTCT-AATTTGACTATTATCCTGATCCAAAA----------CAGCAC-AG-GTCTTGTGAAC--AAAAGACTGAGGGT--------------------CA--AAAAGCCATCCTATCAACCCTA-CTCTTGTAAAAT--GGGGAC------ACTTGCTTTACTTTC i mm10.chr15 C 0 C 0 s canFam3.chr10 46109505 261 - 69331447 CAGTGT-AAATGCCAGTCACA-------TTAGTAGCACTCACTGTCTGAAGGCT----GTATATACCTG-AAAGCAAAGTTTCAGGTTTGACTGGCTTTTCAGAAAAAATGTG----GATGGCCT-AATTTCAATATTATTCAGGTATAATATTGTCTGGAGCAGCACAAG-GGCCAGTGGAA-AAAGAACCTAATGGTGT-CAGCTCTTGCATGCATGCCAGAAAAGTCAGCACGtcaattttaccatctgtgaaat--gggga---caattctagctttgccttc i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 80121 218 + 1056298 ----------TAGCAG-------------------CATTCACTGTCTAAAGGCACA----------TTA-AGACCCAAGTCCCAGGTCTGATTGGCTTTTTAGAATAGAAGTATTTTATTGGTCTAAATGTGATTACTACCCAGGTGTGAAA----------GAGCAC-AG-------TGGAA-AAAGAAACAGGACGTGGATGGTCCATTCACGATGCCC----------CCACAtcaattttattgcttgtaaggttgggggaaaatggtatttgctttgccttc i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=594402.000000 s hg38.chr22_GL383582v2_alt 96520 68 + 162811 tgcctaaagctgctgtgtaaaataaccataaaagtgttttacaaactagaaagttatgtaattattag s panTro5.chr22 28876401 68 + 37823149 tgcctaaagctgctgtgtaaaataaccataaaagtgttttataaactagaaagttatgtaattattag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41150996 68 + 50109623 tgcctaaagctgctgtgtaaaataaccataaaagtgttttataaactagaaagttatgtaattattag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3173738 68 + 4464012 tgcataaagctgctgtgtaaaataaccataaaagtgttttataaactagaaagttatgtaattattag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106669701 68 - 115148730 tgcataaagctgctgtgtaaaataaccataaaagtattttataaactagaaagttatgtaattattag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84284425 68 + 92844088 tgcataaagttgctgtgtaaaataaccatagaagtgttttataaactagaaagttatgtaattattag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87629462 68 - 96509753 tgcataaagttgctgtgtaaaataaccatagaagtgttttataaactagaaagtTATGTAATTATTAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7121262 68 - 13098629 tgcataaagttgctgtgtaaaataaccatagaagtgttttataaactagaaagttatgtaattattag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4088050 68 - 4483953 tgcataaagttgctgtgtaaaataaccatagaagtgttttataaactagaaagttatataattattag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24718369 68 + 33263144 tgcataaagttgctgtgtaaaataaccatagaagtgttttataaactagaaagttatgtaattattag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13999406 68 - 14338769 tgcataaagttgctgtgtaaaataaccatagaagtgttttataaactagaaagttatataattattag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 937374 68 + 1946073 tgcataaagttgctgtgtaaaataaccatagaagtgttttataaactagaaagttatgtaattattag i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5731484 68 + 108171978 ctcttaatgttgttgtatgaaataactgtgaaagtgtttcataaactagaaagttatataattgttag i micMur3.chr7 C 0 I 103 s otoGar3.GL873526 36308972 65 - 42659167 tttttaatgttgtc---tgaaataactgtgaaagtgttttgtaaactagaaagttacgtaattgttag i otoGar3.GL873526 C 0 I 61 s mm10.chr15 82831367 62 + 104043685 CTCGCAAA-----TGTGTAAAATCACTGTAAAAGAATCTTACAAACAACAAAA-AATGTAATTATTTG i mm10.chr15 C 0 C 0 s canFam3.chr10 46109766 58 - 69331447 ctcataaagttgttgtgtgaagtaactgcaa---tgtcttat-------agagttatgtaattattag i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 80339 63 + 1056298 ctcataaagctgtt---tgaatcaggtgtgaaagtgttttataaattagaa--ctatataCGTACTAG i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e proCoq1.NW_012136747v1 5096042 164 - 6317780 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=685054.000000 s hg38.chr22_GL383582v2_alt 96588 112 + 162811 aacttTTAAATAAAAATTAC-------------AT-AAAACATACATTCATCTC-----TGTCATACT-TT-GGCAATTACTGATATCAAAA-TCAGATATAATA---CA----AAGT--ACAGTCTATTAA--------------ATTAAGACAAA s panTro5.chr22 28876469 112 + 37823149 aacttTTAAATAAAAATTAC-------------AT-AAAACATACATTCATCTC-----TGTCATACT-TT-GGCAATTACTGATATCAAAA-TCAGATATAATA---CA----AAGT--ACAGTCTATTAA--------------ATTAAGACAAA i panTro5.chr22 C 0 I 1 s panPan2.chr22 41151064 112 + 50109623 aacttTTAAATAAAAATTAC-------------AT-AAAACATACATTCATCTC-----TGTCATACT-TT-GGCAATTACTGATATCAAAA-TCAGATATAATA---CA----AAGT--ACAGTCTATTAA--------------ATTAAGACAAA i panPan2.chr22 C 0 I 1 s gorGor5.CYUI01015375v1 3173806 112 + 4464012 AACTTTTAAATAAAAATTAC-------------AT-AAAACATACATTCATCTC-----TGTCATACT-TT-GGCAATTACTGATATCAAAA-TCAGATATAATA---CA----AAGT--ACAGTCTATTAA--------------ATTAAGACAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106669769 112 - 115148730 aacttTTAAATAAAAATTAC-------------AT-AAAACATACATTCATCTC-----TGTCATACT-TT-GGCAATTACTGATATCAAAA-TCAGATATAATA---CA----AAGT--ACAGTCTATTAA--------------ATTAAGACAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84284493 102 + 92844088 AACTTTTAAACAAAAATTAT-------------AT-AAAACAT--ATTCATCTCTAA-GTGTCATACT-TT-GGCAATTACTGATATCAAA---CAGATATAATA---CA----AAGT--ACAGTCTATTAA--------------A---------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87629530 102 - 96509753 AACTTTTAAACAAAAATTAT-------------AT-AAAACAT--ATTCATCTCTAA-GTGTCATACT-TT-GGCAATTACTGATATCAAA---CAGATATAATA---CA----AAGT--ACAGTCTATTAA--------------A---------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7121330 112 - 13098629 aacttTTAAACAAAAATTAT-------------AT-AAAACAT--ATTCATCTCTAA-GTGTCATACT-TT-GGCAATTACTGATATCAAA---CAGATATAATA---CA----AAGT--ACAGTCTATTAA--------------ATTAAGACAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4088118 114 - 4483953 aacttTTAAACAAAAATTAT-------------AT-AAAACAT--ATTCATCTCTAA-GTGTCATACT-TT-GGCAATTACTGATATCAAAC-TCAGATATAATA---CA----AAGT--ACAGTCTATTAA--------------ATTAAGACAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24718437 127 + 33263144 aacttTTAAACAAAAATTAT-------------AT-AAAACAT--ATTCATCTCTAA-GTGTCATGCT-TT-GGCAATTACTGATATCAAAC-TCAGATATAGTCTATTA----AATT--ACAGTCTATTAA----AGTACAGTCTATTAAGACAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13999474 114 - 14338769 aacttTTAAACAAAAATTAT-------------AT-AAAACAT--ATTCATCTCTAA-GTGTCATACT-TT-GGCAATTACTGATATCAAAC-TCAGATATAATA---CA----AAGT--ACAGTCTATTAA--------------ATTAAGGCAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 937442 114 + 1946073 aacttTTAAACAAAAATTAT-------------AT-AAAACAT--ATTCATCTCTAA-GTGTCATACT-TT-GGCAATTACTGATATCAAAC-TCAGATATAATA---CA----AAGT--ACAGTCTATTAA--------------ATTAAGACAAA i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36309098 132 - 42659167 AAATTGTAAATGAATTTTATGGTCACCCTGTAGAA-AATACAT--CTTCAGCAGTAA-GTGTTATATTATT-GGCAATTACTGATGTCAAAA-TCTGACATAATA---CATACCAAGT--ATAGCCTACTAA--------------ATTAAGACAGA i otoGar3.GL873526 I 61 I 2 s mm10.chr15 82831429 109 + 104043685 -ATTTATAAAAA------AC-------------AT-AAAAGAT--CTTTGTACATG---TGTTACATTCTT-GGCATCTACTAATGTCAAAACTTGGGTACAGTA---AA----TATCTAATAGTCTATTAA--------------ATTAAGGCAGA i mm10.chr15 C 0 I 7 s canFam3.chr10 46109824 118 - 69331447 gacttataaaaa-----tat-------------aTAAAAACATATCTTCATTTATAATGTGTCATATT-TTGGGTAGTTACTGATGTCAAAA-TTAGATCCGACA---CAAGACAAGT--AGAGTCTATTAA--------------ATTGAAACAAA i canFam3.chr10 C 0 I 2 s dasNov3.JH570235 80402 121 + 1056298 AACTTGTAAA-----ATTAT-------------AA-AACATAT--CTTGGTCTGTAATGTGCCTTATT-CT-TGATGTTATTGATATCAAAA-GCAGGCATAATA---CA----AAGC----AGCCTATTAAAATAAGTAGAGCCTATTAAAACAA- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e proCoq1.NW_012136747v1 5096042 164 - 6317780 I e micMur3.chr7 5731552 103 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=828454.000000 s hg38.chr22_GL383582v2_alt 96700 135 + 162811 CAGTTTAAAGTTAATTTTTTGTTAAGT--AATTTCTCTCCTACAAT-CTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGC--TGGTCGTT-TTTTTGGTAAGTCTAGCTGCTG----TATGTTTCAGTAATGT s panTro5.chr22 28876582 135 + 37823149 CAGTTAAAAGTTAATTTTTTGTTAAGT--AATTTCTCTCCTACAAT-CTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGC--TGGTCGTT-TTTTTGGTAAGTCTAGCTGCTG----TATGTTTCAGTAATGT i panTro5.chr22 I 1 C 0 s panPan2.chr22 41151177 135 + 50109623 CAGTTAAAAGTTAATTTTTTGTTAAGT--AATTTCTCTCCTACAAT-CTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACATCTGCTGC--TGGTCGTT-TTTTTGGTAAGTCTAGCTGCTG----TATGTTTCAGTAATGT i panPan2.chr22 I 1 C 0 s gorGor5.CYUI01015375v1 3173918 134 + 4464012 CAGTTAAAAGTTAATTTTTT-TTAAGT--AATTTTTCTCCTACAAT-CTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGC--TGGTCGTT-TTTTTGGTAAGTCTAGCTGCTG----TATGTTTCAGTAATGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106669881 136 - 115148730 CAGTTAAAAGTTAATTTTTTGTTAAGT--AATTTTTCTCCTACAAT-CTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGC--TGGTCGTTGTTTTTGATAAGTCTAGCTGCTG----TATGTTTCAGTAATGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84284595 126 + 92844088 ---TTAA-----AATTTTTTGTTAAGT--AATTTTTCTCCTACAAC-CTGCCTTAAACAAGCAGACCCTGCATGGGTTTGGACACCTGCTGC--TAGTCG-T-TTTTTGGTAAGTCTAGCTGTTG----TATGTTTCAGTAACGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87629632 127 - 96509753 ---TTAA-----AATTTTTTGTTAAGT--AATTTTTCTCCTACAAC-CTGCCTTAAACAAGCAGACCCTGCATGGGTTTGGACACCTGCTGC--TAGTCGTT-TTTTTGGTAAGTCTAGCTGTTG----TATGTTTCAGTAACGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7121442 130 - 13098629 CAGTTAA-----AATTTTTTGTTAAGT--AATTTTTCTCCTACAAC-CTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGC--TAGTCGTT-TTTTTGGTAAGTCTAGCTGTTG----TATGTTTCAGTAACGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4088232 130 - 4483953 CAGTTAA-----AATTTTTTGTTAAGT--AATTTTTCTCCTACAAC-CTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGC--TAGTCGTT-TTTTTGGTAAGTCTAGCTGTTG----TATGTTTCAGTAACGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24718564 130 + 33263144 CAGTTAA-----AATTTTTTGTTAAGT--AATTTTTCTCCTACAAC-CTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGC--TAGTCGTT-TTTTTGGTAAGTCTAGCTGTTG----TATGTTTCAGTAACGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13999588 129 - 14338769 CAGTTAA-----AATTTTTTGTTAAGT--AATTTTTCTCCTACAAC-CTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGC--TAGTCG-T-TTTTTGGTAAGTCTAGCTGTTG----TATGTTTCAGTAACGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 937556 130 + 1946073 CAGTTAA-----AATTTTTTGTTAAGC--AATTTTTCTCCTACAAC-CTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGC--TGGTCGTT-TTTTTGGTAAGTCTAGCTGTTG----TATGTTTCAGTAACGT i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36309232 127 - 42659167 AAGTTGTAAGTTATTTTTTTGGAAGGA--ATTTTTTATCCTAGAATATTGCCTGAAACAAGGAGACACTGGGTGGGCCTGGACACTTGCTGTCACAGTTGTT------------TATAGCTTCCG----GATGTTTCAGTAGTAG i otoGar3.GL873526 I 2 C 0 s canFam3.chr10 46109944 98 - 69331447 CAATTAAAC---AATTATTTTTTAAA---ACTTTTCCCCTTAGAATTCTGCCTAAAACAAGCAGACCCCATGTGGG-CTGAA----TTCTAT--CACACAGT-CTTTCTGTA--------------------------------- i canFam3.chr10 I 2 C 0 s dasNov3.JH570235 80523 138 + 1056298 -AGTTAAAA---ATTATTTTGTGGAACTAATTTTTTCCCTTAGAATATTGCCTAAAATAAGGAGACGCTGGATGGACTTGGAGGTCTACTGC--TACACGGT-CTTCTGGTAATTTTAGTTACTGGCTACACCCTGCAATAGGAT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e mm10.chr15 82831538 7 + 104043685 I e proCoq1.NW_012136747v1 5096042 164 - 6317780 I e micMur3.chr7 5731552 103 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=26195.000000 s hg38.chr22_GL383582v2_alt 96835 3 + 162811 TTC s panTro5.chr22 28876717 3 + 37823149 TTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41151312 3 + 50109623 TTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3174052 3 + 4464012 TTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106670017 3 - 115148730 TTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84284721 3 + 92844088 TTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87629759 3 - 96509753 TTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7121572 3 - 13098629 TTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4088362 3 - 4483953 TTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24718694 3 + 33263144 TTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13999717 3 - 14338769 TTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 937686 3 + 1946073 TTC i colAng1.NW_012115588v1 C 0 C 0 s proCoq1.NW_012136747v1 5096206 3 - 6317780 TTC i proCoq1.NW_012136747v1 I 164 C 0 s otoGar3.GL873526 36309359 3 - 42659167 TTT i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 80661 3 + 1056298 TTT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e mm10.chr15 82831538 7 + 104043685 I e canFam3.chr10 46110042 0 - 69331447 C e micMur3.chr7 5731552 103 + 108171978 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=488619.000000 s hg38.chr22_GL383582v2_alt 96838 54 + 162811 ATCTCCGACGGTGTGGAAGGTCAGTTCTTGGCCAAGT-CTCTGGACACTTCACTT s panTro5.chr22 28876720 54 + 37823149 ATCTCCGACGGTGTGGAAGGTCAGTTCTTGGCCAAGT-CTCTGGACACTTCACTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41151315 54 + 50109623 ATCTCCGACGGTGTGGAAGGTCAGTTATTGGCCAAGT-CTCTGGACACTTCACTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3174055 54 + 4464012 ATCTCCGACGGTGTGGAAGGTCAGTTCTTGGCCAAGT-CTCTGGACACTTCACTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106670020 54 - 115148730 ATCTCCGACGGTGTGGAAGGTCAGTTCTTGGCCAAGT-CTCTGGACACTTCACTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84284724 54 + 92844088 ATCTCTGAGGGTGCAGAAGGTCAGTTCTTGGCCAAGT-CTCTGGACACTTCACTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87629762 54 - 96509753 ATCTCTGAGGGTGCAGAAGGTCAGTTCTTGGCCAAGT-CTCTGGACACTTCACTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7121575 54 - 13098629 ATCTCTGAGGGTGCAGAAGGTCAGTTCTTGGCCAAGT-CTCTGGACACTTCACTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4088365 54 - 4483953 ATCTCCGAGGGTGCAGAAGGTCAGTTCTTGGCCAAGT-CTCTGGACACTTCACTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24718697 54 + 33263144 ATCTCCGAGGGTGCAGAAGGTCAGTTCTTGGCCAAGT-CTCTGGACACTTCACTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13999720 54 - 14338769 ATCTCCGAGGGTGCAGAAGATCAGTTCTTGGCCAAGT-CTCTGGACACTTCACTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 937689 54 + 1946073 ATCTCCAAGGGTGCGGAAGGTCAGTTCTTGGCCAAGT-CTCTCGACACTTCACTT i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5731655 55 + 108171978 ATCTCCAACGGTGTGGATGGTCAGCTCTTGGCCAAATCCTCTGGACACTTCACCT i micMur3.chr7 I 103 C 0 s proCoq1.NW_012136747v1 5096209 54 - 6317780 ATCTCCAAGGGTTTGGATGGTCAGCTCTTGGCCAAAT-CTCTGGACACTTCACCT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36309362 54 - 42659167 ATCTCCAAGGGTGTGGATGGTCAGTTCTTGGCCAAAT-CTCTAGATATTTCACAT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46110042 34 - 69331447 ACTTCAGAGAGGGTGTACGGTCAGCTTTTGGCTA--------------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 80664 51 + 1056298 CTCTCTGAGGGTGTGGATG-TCAGCTCATGGCCAAAA-CTTCC--CACGTCACCT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e mm10.chr15 82831538 7 + 104043685 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=395205.000000 s hg38.chr22_GL383582v2_alt 96892 48 + 162811 CTTAGCTACTATTTACTATTACTTTCATTGTATCTCCCCTCTCAATTC s panTro5.chr22 28876774 48 + 37823149 CTTAGCTACTATTTACTATTACTTTCATTGTATCTCCCCTCTCAATTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41151369 48 + 50109623 CTTAGCTACTATTTACTATTACTTTCATTGTATCTCCCCTCTCAATTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3174109 48 + 4464012 CTTAGCTACTATTTACTATTACTTTCATTGTATCTCCCCTCTCAATTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106670074 48 - 115148730 CTTAGCTACTATTTACTATTACTTTCATTATATCTCCCCTCTCAATTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84284778 48 + 92844088 CTTAGCTACTATTTACTATTACTTTCATTATATCTCCCCTCTCAATTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87629816 48 - 96509753 CTTAGCTACTATTTACTATTACTTTCATTATATCTCCCCTCTCAATTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7121629 48 - 13098629 CTTAGATACTATTTACTATTACTTTCATTATATCTCCCCTCTCAATTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4088419 48 - 4483953 CTTAGCAACTATTTACTATTACTTTCATTATATCTCCCCTCTCAATTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24718751 48 + 33263144 CTTAGCTACTATTTACTATTACTTTCATTATATCTCCCCTCTCAATTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13999774 48 - 14338769 CTTAGCTACTATTTACTATTACTTTCATTATATCTCCCCTCTAAATTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 937743 48 + 1946073 CTTAGCTACTGTTTACTATTACTTTCATTATATCTCCCCTCTCAATTC i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5731710 46 + 108171978 CTTAGCTACTATTTACTAGTACTTTCACCGTATTTTCCCTA--GATTC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5096263 46 - 6317780 CTTAGCTACTATTTACCAGTACTTTCACTATATTTTCCCTA--GATTC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36309416 43 - 42659167 CTTAGCTACTGCT-----ACAACTTTACTGCATCCTCCCTCCTGCTTC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82831545 42 + 104043685 CCTGGCTACTATT------TACTTTCACTGGACTTCCACTCTCAGGTC i mm10.chr15 I 7 C 0 s canFam3.chr10 46110076 5 - 69331447 ----------------------------TATAT--------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 80715 44 + 1056298 CTTGGCTACCGTTCACTATTACTTTCACCCTAT-TCCCCTCTCTT--- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1964816 9 - 2117846 I a score=238390.000000 s hg38.chr22_GL383582v2_alt 96940 35 + 162811 TCCTATCTGGGACCAATA---CAAACTAA-----AACTATTTT s panTro5.chr22 28876822 35 + 37823149 TCCTATCTGGGACCAATA---CAAACTAA-----AACTACTTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41151417 35 + 50109623 TCCTATCTGGGACCAATA---CAAACTAA-----AACTACTTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3174157 35 + 4464012 TCCTATCTGGGACCAATA---CAAACTAA-----AACTGTTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106670122 36 - 115148730 TCCTATCCGGGACCAATA---CAAATTAAC----AACTATTTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84284826 36 + 92844088 TCCCATCCTGGACCAATA---CAAATTAAT----AACTATTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87629864 36 - 96509753 TCCTATCCTGGACCAATA---CAAATTAAA----AACTATTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7121677 36 - 13098629 TCCTATCCTGGACCAATA---CAAATTAAT----AACTATTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4088467 36 - 4483953 TCCTATCCTGGACCAATA---CAAATTAAT----AACTATTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24718799 36 + 33263144 TCCTATCCTGGACCAATA---CAAATTAAT----AACTATTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13999822 36 - 14338769 TCCTATCCTGGACCAATA---CAAATTAAT----AACTATTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 937791 36 + 1946073 TCCTATCCTGGACCAATA---CAAATTAAT----AACTATTTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964825 36 - 2117846 TTCTATCCTTGACCAATA---CAAATTAAC----TACTGTTTT i calJac3.chrUn_GL286373 I 9 I 2 s micMur3.chr7 5731756 39 + 108171978 TTCTAACCTTGACCAATA---CAGATTAACAG-GAACTATTTT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5096309 39 - 6317780 TTCCATCCTTGACCAATA---CAGGTTAACAG-GAACTATTTT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36309459 37 - 42659167 TTCTACTCTTAACCGAT-----AGATACACAA-GAACAATTTT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82831587 27 + 104043685 TTCCATGGTTGAGCAATA----------------CTCTTTTTT i mm10.chr15 C 0 C 0 s canFam3.chr10 46110081 15 - 69331447 ------------------------AACAGC----AATTATTTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 80759 43 + 1056298 CTATGTTTGAGACCAACATGGCAAATTTACTGTGAAATATTTC i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 41070 65 + 5963231 I e cebCap1.NW_016107750v1 1361179 49 - 1807191 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=1981847.000000 s hg38.chr22_GL383582v2_alt 96975 169 + 162811 TAAAGCTTTCTAAAGCA---TTTTGCATT---ACAAGAAAAGATGTTAAATAAATGGGGACTAA-------T--AATGACACACAACTGCATACAAATTAAA-TTCTAGCAGGATTTCGAAAGCATTGAAAACTGCCCC-AAAATGGCATATTGAGCACAACTAGAATGAGAAAAACCGCCTCACA s panTro5.chr22 28876857 169 + 37823149 TAAAGCTTTCTAAAGCA---TTTTGCATT---ACAAGAAAAGATGTTAAATAAATGGGGACTAA-------T--AATGACACACAACTGCATACAAATTAAA-TTCTAGCAGGATTTCGAAAGCATTGAAAACTGCCCC-AAAATGGCATATTGAGCACAACTAGAATGAGAAAAACCGCCTCACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41151452 169 + 50109623 TAAAGCTTTCTAAAGCA---TTTTGCATT---ACAAGAAAAGATGTTAAATAAATGGGGACTAA-------T--AATGACTCACAACTGCATACAAATTAAA-TTCTAGCAGGATTTCGAAAGCATTGAAAACTGCCCC-AAAATGGCATATTGAGCACAACTAGAATGAGAAAAACCGCCTCACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3174192 169 + 4464012 TAAAGCTTTCTAAAGCA---TTTTGCATT---ACAAGAAAAGATGTTAAATAAATAGGGACTAA-------T--AATGACACACAACTGCATACAAACTAAA-TTCTAGCAGGATTTCGAAAGCATTGAAAACTGCCCC-AAAATGGCATATTTAGCACAACTAGAATGAGAAAAACCGCCTCACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106670158 169 - 115148730 TAAAGCTTTCTAAAGCA---TTTTGCATT---GGAAGAAAAGATGTTAAATAAATGGGGACTAA-------T--AATGACACACAACTGCATACAAATTAAA-CTCTAGCAGGATTTCAAAAGCATTGAAAACTGCCCC-AAAATGGCATATTGAGCACAACTAGAATGAGAAAAACCGCCTCACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84284862 168 + 92844088 TAAAGCCTTCTAAAGCA---TTTTGCATT---GGAAGAATAGATGTTAAATAAATGAGGACTAA-------T---ATGACACACAACTGCATACAAATTAAA-CTCTAGCAGGATTTCGAAACCATTGAAAACTGCCCC-AAAATGGTATATTGAGCACAACCAGAATGAGAAAAACTGCCTCACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87629900 168 - 96509753 TAAAGCCTTCTAAAGCA---TTTTGCATT---GGAAGAATAGATGTTAAATAAATGAGGACTAA-------T---ATGACACACAACTGCATACAAATTAAA-CTCTAGCAGGATTTCGAAACCATTGAAAACTGCCCC-AAAATGGTATATTGAGCACAACCAGAATGAGAAAAACTGCCTCACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7121713 168 - 13098629 TAAAGCCTTCTAAAGCA---TTTTGCATT---GGAAGAATAGATGTTAAATAAATGAGGACTAA-------T---ATGACACACAACTGCATACAAATTAAA-CTCTAGCAGGATTTCAAAACCATTGAAAACTGCCCC-AAAATGGTATATTGAGCACAACCAGAATGAGAAAAACTGCCTCACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4088503 168 - 4483953 TAAAGCCTTCTAAAGCA---TTTTGCATT---GGAAGAATAGATGTTAAATAAATGGGGACTAA-------T---ATGACACACAACTGCATACAAATCAAA-CTCTAGCAGGATTTCGAAACCATTGAAAACTGCCCC-AAAATGGTATATTGAGCACAACTAGAATGAGAAAAACTGCCTCATA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24718835 168 + 33263144 TAAAGCCTTCTAAAGCA---TTTTGTATT---GGAAGAACAGATGTTAAATAAATGGGGACTAA-------T---ATGACACACAACTGCATACAAATTAAA-CTCTAGCAGGATTTTGAAAGCATTGAAAACTGCCCC-AAAATGGCATATTGAGCACAACTAGAATGAGAAAAACTGCCTCACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 13999858 168 - 14338769 TAAAGCCTTCTAAAGCA---TTTTGCATT---GGAAGAATAGATGTTAAATAAATGGGGACTAG-------T---ATGACACACAACTGCATACAAATTAAA-CTCTAGCAGGATTTCGAAACCATTGAAAACTGCCCC-AAAATGGTATATTGAGCACAACTAGAATGAGAAAAACTGCCTCACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 937827 168 + 1946073 TAAAGCTTTCTAAAGCA---TTTTGCATT---GGAAGAACAGATGTTAAATAAACGGGGACTAA-------T---ATGACACACAACTGCATACAAATTAAA-CTCTAGCAGGATTTCAAAAGCACTGAAAACTGCCCC-AAAATGGCATATTGAGCACAACTAGAATGAGAAAAACTGCCTCACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1964863 169 - 2117846 TGAAGTTTTCTAAAGCA---TTTTGCACT---GGAAGAAAACA--TTAAAT----GGGGACTAACTGCAGTT---ATGATACATAACTGCATACAAATTAAA-CACTAGCAGGAGTTAGAAAGCATTGAAAACTACCCC-AAAATGGCATACTGGGCACAACCAGAATGAGAAAAACAGCCTCACT i calJac3.chrUn_GL286373 I 2 C 0 s cebCap1.NW_016107750v1 1361228 164 - 1807191 TAAAGTTTTCTAAAGCA---TTTTGCACT---GGAAGAAAACATGTTAAAT----GGGGACTAA-------T---ATGATACACAACTGCATACAAATTAAA-CACTAGCAGGAGTTAGGAAGCATTGAAAACTACCCC-AAAATGGCATAGGGGGCACAACTAGAATGAGAAAAACAGCCTCACT i cebCap1.NW_016107750v1 I 49 C 0 s aotNan1.NW_018512383v1 41135 164 + 5963231 TAAAGTTTTCTAAAGCA---TTTTGCACT---GGAAGAAAACATGTTAAAT----GGGGACTAA-------T---ATGATACACAATTGCATACAAATTAAA-CACTAGCAGGAGTTAGAAAGCATTGAAAACTACCCC-AAAATGGCATACTGGGCACAACTAGAATGAGAAAAACAGCCTCACT i aotNan1.NW_018512383v1 I 65 C 0 s micMur3.chr7 5731795 164 + 108171978 TAAAGTTTTCTGACATG---TTTTGCATT---GGGAGGGAAGGTGT----TAAATGGAGATTAA-------A---GCTACACACAACTGTGCACAAATTAAA-CACTAGCAGGAGTTCGAAAGCATTGAAAACCACCCA-AAAGAGGCACACTGAGCATAATTAGAATAAGAAAAAGTGCCCCAAC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5096348 164 - 6317780 TAAAGTTTTCTGACACA---TTTTGCATT---GGGATGGAAGGTGT----TAAATGGGGACTAA-------A---GCTACAAACAACTGCATACAAATTAAA-CACTAACAGGAGTTCAAAAGCAATGAAAATCACCCA-AAAGGGGCATACTGAGCATAACTAGAATGAGAAAAAGTGCCCCAAA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36309496 157 - 42659167 TGAAGTTTTTTGAAGCA---TTTTGCATT--------GGAAGGTATTAAATAAATGGGGGCTAA-------A---ACTACATACAGCCACATACAAATTAAA-CACTAGCAAGAGTTCAAAAGTATTGAAAACTACCC---AAGAGGCATACAGAACAC-ACTAGAATGAGAAGAC---CACCATA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82831614 138 + 104043685 TAAA--------AAGTC---TCTTGTTT----------GAAGATGTT---TAAATGGGGACTGA-------A------ATACACATGAACACATAAATGAAAGAATTAGCAAGAGTTCAAAACCACTGACAAT---CTG-AGAAGGGCTTACTAAGCC-------AATCTGAGCAACTACATCACA i mm10.chr15 C 0 I 625 s canFam3.chr10 46110096 167 - 69331447 TAGTGTTTTGTGAAGCAC--TTTTGCACT---GGGAG------TACTAAATAGATGAGGAGAGA-------AAAAATAACACACAATCACATACTAATTAAA-TATTTGCAGGAGATCAAAAGCACTGAAAACTACCCCTAAAAAGGCACAAGGAGGACAACCAGAATGAGGACAAGTGCCCTACA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 80802 146 + 1056298 TAAAGTTGTATGAAGCACTTTTTTGCACTTCTGGGAAGAAAGGTATTAAAT--------ATTAA-------TAAAACCACACACAGT--CATACAAATTAAA---------------------CATCGGAAATCTTCCC-AAAAC-ATATTCTGAGTACAACCAGAGTAGCAAAGAGTGCCCTGCA i dasNov3.JH570235 C 0 C 0 e saiBol1.JH378157 8876820 0 - 16357246 C a score=1323565.000000 s hg38.chr22_GL383582v2_alt 97144 113 + 162811 GGCTTGCCTGTTGTACTCTACAGACAGTGCCCTC---T----GTTATGTGGAGAGCAGACCTGGAAACCAATGACTCCTTTGCTGCCTGCATCAGAGTCACC--TGCCAGGTGC-TCCTAGCC s panTro5.chr22 28877026 113 + 37823149 GGCTTGCCTGTTGTACTCTACAGACAGTGCCCTC---T----GTTATGTGGAGAGCAGACCTGGAAACCAATGACTCCTTTGCTGCCTGCATCAGAGTCACC--TGCCAGGTGC-TCCTAGCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41151621 113 + 50109623 GGCTTGCCTGTTGTACTCTACAGACAGTGCCCTC---T----GTTATGTGGAGAGCAGACCTGGAAACCAATGACTCCTTTGCTGCCTGCATCAGAGTCACC--TGCCAGGTGC-TCCTAGCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3174361 113 + 4464012 GGCTTGCCTGTTGTACTCTACAGACAATGCCCTC---T----GTTATGTGGAGAGCAGACCTGGAAACCAATGACTCCTTTGCTGCCTGCATCAGAGTCACC--TGCCAGGTGC-TCCTAGCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106670327 113 - 115148730 GGCTTGCCTGTTGTACTCTACAGACACTGCCCTC---T----GTTATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTGCATCAGAGTCACC--TGCCAGGTGC-TCCCAGCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84285030 113 + 92844088 AGCTTGCCTGTTGTACTCTACAGACACTGCCCTC---T----GTTATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTTCATCAGAGTCACC--TGCCAGGTGC-TCCTAGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87630068 113 - 96509753 AGCTTGCCTGTTGTACTCTACAGACACTGCCCTC---T----GTTATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTTCATCAGAGTCACC--TGCCAGGTGC-TCCTAGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7121881 113 - 13098629 AGCTTGCCTGTTGTACTCTACAGACACTGCCCTC---T----GTTATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTTCATCAGAGTCACC--TGCCAGGTGC-TCCTAGCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4088671 113 - 4483953 AGCTTGCCTGTTGTACTCTACAGACACTGCCCTC---T----GTTATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTGCATCAGAGTCACC--TGCCAGGTGC-TCCTAGCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24719003 113 + 33263144 AGCTTGCCTGTTGTACTCTACAGACACTGCCCTC---T----GTTATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTGCATCAGAGTCACC--TGCCAGGTGC-TCCTAGCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14000026 113 - 14338769 AGCTTGCCTGTTGTACTCTACAGACACTGCCCTC---T----GTTATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTGCATCAGAGTCACC--TGCCAGGTGC-TCCTAGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 937995 111 + 1946073 ACCTTGCCTGTTGTACTCTACAGACACTGCCCTC---T----GTTATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTGCATC--AGTCACC--TGCCAGGTGC-TCCTAGCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1965032 112 - 2117846 GGCTTGCCTGTTGTACTCTCCAGACACTGCCCCC---C----ATCATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCTTGCACCAGCATCGCC--TGCCA-GTGC-TCCTAGCC i calJac3.chrUn_GL286373 C 0 I 123 s cebCap1.NW_016107750v1 1361392 113 - 1807191 GGCTTGCCTGTTGTACTCTCCAGACACTGCCCCC---C----ATCATGTGGAGGGCAGACCTGGGCACCTATGACTTCTTTGCTGCCTGTGCCACCATTACC--TGCCAGGTGC-TCCTAGCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 41299 113 + 5963231 GGCTTGCCTGTTGTACTCTCCAGACACTGCCCCT---C----ATCATATGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTGTACCAGCATCACC--TGCCAGGTGC-TCCTAGCC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5731959 110 + 108171978 AGCTTGCCTACTGCACTC--CAGACACTGCCCTG---TG--TGTTAGGTGGTGAGCAGACTTGGGCA-CAGTGACTCCTTTGCTGCCTGCACC--GGTCATC--TGCCACATGC-TCCTAGCC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5096512 109 - 6317780 GGCTTGCCTACTGCACTCCACAGACACTGCCCTG---TG--TGTTA---GGTGAGCAGACTCAGGCA-CAGGGACTCCTTTGCTGCCTGCACC--AGTCATC--TGCCACGTGC-TCCTAGCC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36309653 100 - 42659167 GGCTCGCCTG----------CACACACTGCCGTG---CT--GGTTA---AGTGGCAAGACTTGAGGA-CCATGGTTCCTTTGCTGCCTGCACT--AGTCATC--TGCCATGTGCTTCCCAGCC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46110263 99 - 69331447 GGCCAGTCGGCTGGA-TCTGCAGCTACTTCCCCC---TGCCTGTTATACAGACAGCAGGCTCAG-----------------GCTGCCTGCACCAGTGTCACC--TGCCACGTGC-TCCTGGCC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 80948 114 + 1056298 -GTTTGCTGACTGTCCTGGGCAGACCTCACCCCCATGC----GCTAGGTGG-GGTCAGTCTCAGGCA-CATAGACTCGTT-GCTGCCTGCACCAGGGTCATCCTTGCCACTTGC-TCCTAGCT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82831752 625 + 104043685 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=2816438.000000 s hg38.chr22_GL383582v2_alt 97257 238 + 162811 ATACTTCTCCAAACCTGTCCC-----------------TA-----------------------CTCACATTAA------T-----------CTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTATTCCTTACAACACACTTAGGGCCCAATAGTTCATCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCTCCAATACAAGCCCATGAAA---ACACTCA--------CACAA-ACTTTCTTTAATCTG-ATCATCTTTCAAGC------ s panTro5.chr22 28877139 238 + 37823149 ATACTTCTCCAAACCTGTCCC-----------------TA-----------------------CTCACATTAA------T-----------CTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTATTCCTTACGACACACTTAGGGCCCAATAGTTCATCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCCCACGAAA---ACACTCA--------CACAA-ACTTTCTTTAATCTG-ATCATCTTTCAAGC------ i panTro5.chr22 C 0 C 0 s panPan2.chr22 41151734 238 + 50109623 ATACTTCTCCAAACCTGTCCC-----------------TA-----------------------CTCACATTAA------T-----------CTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTATTCCTTACAACACACTTAGGGCCCAATAGTTCATCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCCCACGAAA---ACACTCA--------CACAA-ACTTTCTTTAATCTG-ATCATCTTTCAAGC------ i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3174474 238 + 4464012 ATACTTCTCCAAACCTGTCCC-----------------TA-----------------------CTCACATTAA------T-----------CTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGACGGTACCATTCCTTACAACACACTTAGGGCCCAATAGTTCATCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCCCATGAAA---ACACTCA--------CACAA-ACTTTCTTTAATCTG-ATCATCTTTCAAGC------ i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106670440 239 - 115148730 ATACTTCTCCAAACCTGTCCC-----------------CA-----------------------CTCACATTAA------T-----------CTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTATTCCTTACAACACACTTAGGGCCCAATAGTTCATCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCCGACGAAA---ACACACA--------CACAATTCTTTCTTTAATCTG-ATCATCTTTCAGGC------ i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84285143 239 + 92844088 ATACTTCTCACAACCTATCCC-----------------CA-----------------------TTCACATTAGAGTAACT-----------CTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTACTCCTT-CAACACACTTAGAGGCTAAGAGTTCACCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCAGATGAAA---ACACT------------CAA-ACTTTCTTTAATCTG-ATCATCTTTCAGGC------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87630181 239 - 96509753 ATACTTCTCACAACCTATCCC-----------------CA-----------------------TTCACATTAGAGTAACT-----------CTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTACTCCTT-CAACACACTTAGAGGCTAAGAGTTCACCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCAGATGAAA---ACACT------------CAA-ACTTTCTTTAATCTG-ATCATCTTTCAGGC------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7121994 243 - 13098629 ATACTTCTCACAACCTATCCC-----------------CA-----------------------TTCACATTAGAGTAACT-----------CTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTACTCCTT-CAACACACTTAGAGGCTAAGAGTTCACCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCAGATGAAA---ACACTCA--------AACAA-ACTTTCTTTAATCTG-ATCATCTTTCAGGC------ i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4088784 239 - 4483953 GTACTTCTCACAACCTATCCC-----------------CA-----------------------TTCACATTAGAGTAACT-----------CTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTAGATCTTAGGTCCAACAGATGGTACTACTCCTT-CAACACACTTAGAGGCTAAGAGTTCATCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAAAACAAGCAGATGAAA---ACACT------------CAA-ACTTTCTTTAATCTG-ATCATCTTTCAGGC------ i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24719116 243 + 33263144 ATACTTCTCACAACCTATCCC-----------------CA-----------------------CTCACATTAGAGTAACT-----------CTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTACTCCTT-CAACACACTTAGAGGCTAAGAGTTCATCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCAGGTGAAA---ACACTCA--------AACAA-ACTTTCTTTAATCTG-ATCATCTTTCAGGC------ i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14000139 243 - 14338769 GTACTTCTCACAACCTATCCC-----------------CA-----------------------TTCACATTAGAGTAACT-----------CTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTAGATCGTAGGTCCAACAGATGGTACTACTCCTT-CAACACACTTAGAGGCTAAGAGTTCATCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCAGATGAAA---ACACTCA--------AACAA-ACTTTCTTTAATCTG-ATCATCTTTCAGGC------ i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 938106 242 + 1946073 ATACTTCTCACAACCTATCCC-----------------CA-----------------------CTCACATTAGAGTAA-T-----------CTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTACTCCTT-CAACACACTTAGAGGCTAAGAGTTCAACTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCAGATGAAA---ACACTCA--------AACAA-ACTTTATTTAATCTG-ATCATCTTTCAGGC------ i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1965267 255 - 2117846 ATACTTCTTCCAGCCTGTTCC-----------------CA-----------------------CTCACATTAGAGTAA-TGTGAGTAGGAACTAGAATAATCTGCCGTGGCTAATTCTGGACCCTCTGCTGCCACGTGGATCCTAGGTCCAACAGATGGTACTGCTCCTTACAACACACTTGGAGCCTAGGAGTTCATCTTCTCTGCATCCTGAGACCCAGTCATCTGCTTCCCACCAATACAAGCCCATGAAA---ACACTCA--------CATAA-GCCTTCTTTAATCTGAATTATCTTTCAGGC------ i calJac3.chrUn_GL286373 I 123 C 0 s cebCap1.NW_016107750v1 1361505 244 - 1807191 ATACTTCTTCCAGCCTGTTGA-----------------CA-----------------------CTCACATTAGAGTAA-T-----------CTAGAATAATCTGCTGTGGCTGATTCTGGAAGCTCTGCTGCCACATGGATCCTAGGTCCAACAGATGGTACTGCTCCTTACAACACACTTGGAGCCTAACAGTTCATCTTCTCTGCATCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCAGGTGAAA---ACACTCA--------CACAA-GCTTTCTTTAATCTGAATTATCTTTCAGGC------ i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 41412 244 + 5963231 ATACTTCTTCCAGCCTGTTCC-----------------CA-----------------------CTCACATTAGAGTAA-T-----------CTGGAATAATCTGCTGTGGCTGATTCTGGACTCTCTGCTGCCACACGGATCCTAGGTCCAACAGATGGTACTGCTCCTTACAACACACTTGGAGCCTAACAATTCATCTTCTCTGCATCCTGGGACCCAGTCATCAGCTTCCCACCAATACAAGCAGATGAAA---ACACTCA--------CACAA-GCTTTCTTTAATATGAATTATCTTTCAGGC------ i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5732069 226 + 108171978 ACAGATCTCCCAACCTGTTCC-----------------CG-----------------------CTCATATTAGAATAA-T-----------CTAAAATAATCTACTGTAGCTGACTCTAGACCCTCTACTGCCATAGGGGTTTGAGGCCCAGCTGATGGTACTGTTCTCCACAACATACCTAGAGCCTAACAGCGCATCTTCTTTGCTTCTTGGGACACAGTCATCTGTTTCCCACC-ATACTCG---------------------------CATAA-ACTTTCTTTAATCTG-GTCACCTTTCAGAT------ i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5096621 226 - 6317780 ACAGATCTCCCAATCTGTTCC-----------------CA-----------------------CTCACATTAGAATAA-T-----------CTAAAATAATCTACTGCAGCTGACTCTGGACCCTCTACTGCCACATGGGTTTGAGGCCCAGCTGATGATACTGGTCTTCACAACACACCTAGAGCCTAATAGTGCATCTTCTTTGCCTCTTGGGATACAGTCATCTGTTTCCCACC-ATACTAG---------------------------CACAA-ACTTTCTTTAATCTG-ATCACCTTTCAGAT------ i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36309753 237 - 42659167 ACAGATCTCCTAGCCTTCCCCA----------------AA-----------------------CTCACGTTAGAATAA-C-----------CTAAAACAATCTACTGCGGCTGCCTCTGGACCCTCTGCTGCCACATGGATTTGAGATCCAGCTGACAGTACTGGTCTTCACAACACAACTACAGACAAATAGC----CTTCTCTGCCTCTTGGGACACAGTCATCTGCTTCCATCA-AAAGAAGCAGAGAAAA---GTAGT----------CACAC-ACTTTCTTTAATCCT-ATCACCTTTGAAAT------ i otoGar3.GL873526 C 0 I 297 s canFam3.chr10 46110362 231 - 69331447 AAAGTTCTCCCAAACTATCCCCACCCTGCAACCCCACTCA-----------------------CTCACATTAGAATGA-T-----------CTAGAATAATTT-CTCCCGCTGCTTCTGGATCCCCTGCTGCCACAAGGGGCTGAGATCCAGCAGGTGGTACTGCTCCTCCCAACACTCCTAGAGCCTAACAGC---------------------------TCAGCTGCTTCCCACCAAAACCAGGAGAAAAAAAACACATAGG--------CACAA-TCTTCATCTGATC---ATTATCTTTCAG-------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 81062 274 + 1056298 GTGGTTCTCCAGGCTCATCTC-----------------CACCCATGTTATGCAAGCCCACTTGCTCACATTAGAATAA-T-----------CTAGAATAATCTGCACCGGCTGCTTCTGAATCCCAT--TGCTGTGTACAGCTGAGGCCCGGCAGATGGTACTGCTCCTCACAACATACCCAGAGCCTACTGGCTCATCTTCTCCACCTCCTGGGA--CAGTCATCTGCTTCCCATCAAAACTAGGAGGAGGAA---ACACACACACACATGCACAA-ACTTTCTTTAATC---ATCATTCTTTGGATATAAAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82831752 625 + 104043685 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=676756.000000 s hg38.chr22_GL383582v2_alt 97495 56 + 162811 ATAATTTGAAATAAAATTATATATTTAGATCACCATTCTCCTCCCATAAAAGCCCC s panTro5.chr22 28877377 56 + 37823149 ATAATTTGAAATAAAATTATATATTTAGATCACCATTCTCCTCCCATAAAAGCCCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41151972 56 + 50109623 ATAATTTGAAATAAAATTATATATTTAGATCACCATTCTCCTCCCATAAAAGCCCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3174712 56 + 4464012 ATAATTTGAAATAAAATTATATACTTAGATCACCATTCTTCTCCCATAAAAGCCCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106670679 56 - 115148730 ATAATTTGAAATCAAATAATATATTTACATCACCATTCTCCTCCCATAAAAGCCCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84285382 56 + 92844088 ATAATTTGAAATAAAATTATACATTTAGATCACCATTCTCCACCCATAAAAGCCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87630420 56 - 96509753 ATAATTTGAAATAAAATTATACATTTAGATCACCATTCTCCACCCATAAAAGCCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7122237 56 - 13098629 ATAATTTGAAATAAAATTATACATTTAGATCACCATTCTCCACCCATAAAAGCCCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089023 56 - 4483953 ATAATTTGAAATAAAATTATACATTTAGATCACCATTCTCCACCCATAAAAGCCCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24719359 56 + 33263144 ATAATTTGAAATAAAATTATATATTTAGATCACCATTCTCCACCCATAAAAGCCCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14000382 56 - 14338769 ATAATTTGAAATAAAATTATACATTTAGATCACCATTCTCCACCCATAAAAGCCCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 938348 56 + 1946073 ATAATTTGAAATAAAATTATATATTTAGATCACCATTCTCCACCCATAAAAGCCCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1965522 49 - 2117846 ACAATTTGAAATAAAATTATATACTTAAA-------TCTCCTGCCATAAAAGCCCC i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1361749 49 - 1807191 ACAATTTGAAATAAAATTATATATTTAGA-------TCTCCTACCATAAAAGCCTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 41656 49 + 5963231 ACAATTTGAAATAAAATTATATATTTAGA-------TCTCCTGCCATAAAAGCCCC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5732295 56 + 108171978 ATAATCTGAAATAAAATTGTCCATTTAGATCCCCATTCTCCTCCCATAAAACCCCC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5096847 56 - 6317780 ATCATCTGAAATAAAACTGTCCATTTAGATCCCCATTCTCTTCCCATAAAACCCCC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36310287 56 - 42659167 ATAACCTGAAATGAAATTGTCCTATGAGATGCCCACTCTCCTCCCATAAAACTCCT i otoGar3.GL873526 I 297 C 0 s canFam3.chr10 46110593 46 - 69331447 ----------ATATATGTATCCATTTAGACTCCCACTTCCCTCCCATAAAATCCCC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 81336 55 + 1056298 ATAAATTTGAATAAAACTGCCCATTTAAATTCCCATGCCTCTTCCATAAAACCCT- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82831752 625 + 104043685 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=71769.000000 s hg38.chr22_GL383582v2_alt 97551 4 + 162811 AATC s panTro5.chr22 28877433 4 + 37823149 AATC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41152028 4 + 50109623 AATC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3174768 4 + 4464012 AATC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106670735 4 - 115148730 AATC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84285438 4 + 92844088 AATC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87630476 4 - 96509753 AATC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7122293 4 - 13098629 AATC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089079 4 - 4483953 AATC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24719415 4 + 33263144 AATC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14000438 4 - 14338769 AATC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 938404 4 + 1946073 AATC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1965571 4 - 2117846 AATC i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1361798 4 - 1807191 AATC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 41705 4 + 5963231 AATC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5732351 4 + 108171978 AACC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5096903 4 - 6317780 AACC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36310343 4 - 42659167 AATC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82832377 4 + 104043685 AACC i mm10.chr15 I 625 C 0 s canFam3.chr10 46110639 4 - 69331447 AATC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 81391 4 + 1056298 AATC i dasNov3.JH570235 C 0 I 393 e saiBol1.JH378157 8876820 0 - 16357246 C a score=4588299.000000 s hg38.chr22_GL383582v2_alt 97555 372 + 162811 AAAACATGGCTCTGCTACAGATCCTGACAAGTATTTGTTTCTTTGGGAAAACCTTTCAAGTCAAATTATAAA----CCTGTAATAAG----TGTCTCT--GTGGCTGAGT----------GGTGGTTGGGTG--GTAGCTGGCCCCAGAAGTGGTACAAAACGCACAGAAAGCCTGACCCA---------------GGTCCAAATCTCTTGAGTGTGGCCGTTTTGG----CGGCATCTAACAGCTACATCCTTGGATT---CTGTTTTGATCCACAAAGAAAGCCCGTTCCCTTATTTCCCTTCCGA-TGTCTTTGTGCCCATAAGGTGGGACCAGCCTGTC-TGCAGTTTATAGTAAAGTTATGATGTTTTCCATCAGGTTAGAAAGGTTGGGATTAAAGGACTTTTCTC-CTTCAT s panTro5.chr22 28877437 372 + 37823149 AAAACATGGCTCTGCTACAGATCCTGACAAGTATTTGTTTCTTTGGGAAAACCTCTCAAGTCAAATTATAAA----CCTGTAATAAG----TGTCTCT--GTGGCTGAGT----------GGTGGTTGGGTG--GTAGCTGGCCCCAGAAGTGGTACAAAACGCACAGAAAGCCTGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCCGTTTTGG----CGGCATCTAACAGCTACATCCTTGGATT---CTGTTTTGATCCACAAAGAAAGCCCGTTCCCTTATTTCCCTTCCGA-TGTCTTTGTGCCCATAAGGTGGGACCAGCCTGTC-TGCAGTTTATAGTAAAATTATGATGTTTTCCATCAGGTTAGAAAGGTTGGGATTAAAGGACTTTTCTC-CTTCAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41152032 372 + 50109623 AAAACATGGCTCTGCTACAGATCCTGACAAGTATTTGTTTCTTTGGGAAAACCTCTCAAGTCAAATTATAAA----CCTGTAATAAG----TGTCTCT--GTGGCTGAGT----------GGTGGTTGGGTG--GTAGCTGGCCCCAGAAGTGGTACAAAACGCACAGAAAGCCTGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCCGTTTTGG----CGGCATCTAACAGCTACATCCTTGGATT---CTGTTTTGATCCACAAAGAAAGCCCGTTCCCTTATTTCCCTTCCGA-TGTCTTTGTGCCCATAAGGTGGGACCAGCCTGTC-TGCAGTTTATAGTAAAATTATGATGTTTTCCATCAGGTTAGAAAGGTTGGGATTAAAGGACTTTTCTC-CTTCAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3174772 372 + 4464012 AAAACATGGCTCTGCTACAGATCCTGACAAATATTTGTTTCTTTGGGAAAACCTTTCAAGTCACATTATAAA----CCTGTAATAAG----CGTCTCT--GTGGCTGAGT----------GGTGGTTGGGTG--GTAGCTGGCCCCAGAAGTGGTACAAAACGCACAGAAAGCCTGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCCGTTTTGG----TGGCATCTAACAGCTACATCCTTGGATT---CTGTTTTGATCCACAAAGAAAGCCCGTTCCCTTATTTCCCTTCCGA-TGTCTTTGAGCCCATAAGGTGGGACCAGCCTGTC-TCCAGTTTATAGTAAAGTTATGATGTTTTCCATCAGGTTAGAAAGGTTGGGATTAAAGGACTTTTCTC-CTTCAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106670739 372 - 115148730 AAAACGTGGCTCTGCTACAGATCCTGACAAGTATTTGTTTCTTTGGGAAAGTCTTTCAAGTCACATTATAAA----CCTGTAATAAG----TGTCTCT--GTGGCTGAGT----------GGGGGTTGGGTG--GTAGCTGGCCCCAGAAGTGGTACAAAATGCACAGAAAGCCTGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCCATTTTGG----CAGCATCTACCAGCTACATCCTTGTATT---CTGTTTTGATCCACAAAGAAAGCCCATTCCCTTATTTCCCTTCTGA-TGTCTTTGTGCCCATAAGGTGGGACCAGCCTGTC-TGCAGTCTATAGTAAAGTTATGATGTTTTCCATCAGGTTAGAAGGGTTGGGATTAAAGGACTTTTTTC-CTTCAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84285442 364 + 92844088 AAAATGTGGCTCTGCTACAGATCCTGACAAGTATTTGTTTCTTTGGGAAAGCCTTTCAAGTCACATTATAAA----CCTGTAATAAG----TGTCTCT--GTAGCTGAGT----------GGAGGTTGTGTG--GTACCTGGCCCCAGAAGTGGTGCAAAATGCACAGAGAGCATGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCCATTTTGG----CAGCATCTCCCAGCTACATCCTTGGATT---CTGTTTCGATCCAC----AAAGCCCATTCCC---TTTCCCTTCTGA-TGTCTTTGTGCGCATAAGGTGGGACCGGCCTATC-TGCAGTTTATAGTAAAGTTATGATGTTTTCCATCAAGTTAGAAGGGTTGGGATT-AAGGACTTTTTTC-CTTCAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87630480 364 - 96509753 AAAATGTGGCTCTGCTACAGATCCTGACAAGTATTTGTTTATTTGGGAAAGCCTTTCAAGTCACATTATAAA----CCTGTAATAAG----TGTCTCT--GTAGCTGAGT----------GGAGGTTGTGTG--GTACCTGGCCCCAGAAGTGGTGCAAAATGCACAGAGAGCATGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCCATTTTGG----CAGCATCTCCCAGCTACATCCTTGGATT---CTGTTTCGATCCAC----AAAGCCCATTCCC---TTTCCCTTCTGA-TGTCTTTGTGCGCATAAGGTGGGACCGGCCTATC-TGCAGTTTATAGTAAAGTTATGATGTTTTCCATCAAGTTAGAAGGGTTGGGATT-AAGGACTTTTTTC-CTTCAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7122297 364 - 13098629 AAAATGTGGCTCTGCTACAGATCCTGACAAGTATTTGTTTCTTTGGGAAAGCCTTTCAAGTCACATTATAAA----CCTGTAATAAA----TGTCTCT--GTGGCTGAGT----------GGAGGTTGTGTG--GTACCTGGCCCCAGAAGTGGTGCAAAATGCACAGAGAGCATGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCCATTTTGG----CAGCATCTCCCAGCTACATCCTTGGATT---CTGTTTCGATCCAC----AAAGCCCATTCCC---TTTCCCTTCTGA-TGTCTTTGTGCGCATAAGGTGGGACCGGCCTATC-TGCAGTTTATAGTAAAGTTATGATGTTTTCCATCAAGTTAGAAGGGCTGGGATT-AAGGACTTTTTTC-CTTCAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089083 364 - 4483953 AAAATGTAGCTCTGCTACAGATCCTGACAAGTATTTGTTTCTTTGGGAAAGCCTTTCAAGTCACATTATAAA----CCTGTAATAAG----TGTCTCT--GTGGCTGAGT----------GGAGGTTGTGTG--GTACCTGGCCCCAGAAGTGGTGCAAAATGCACAGAGAGCATGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCCATTTTGG----CAGCATCTCCCAGCTACATCCTTGGATT---CTGTTTCGATCCAC----AAAGCCCATTCCC---TTTCCCTTCTGA-TGTCTTTGTGCGCATAAAGTGGGACCGGCCTATC-TGCAGTTTATAGTAAAGTTATGATGTTTTCCATCAAGTTAGAAGGGTTGGGATT-AAGGACTTTTTTC-CTTCAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24719419 364 + 33263144 AAAATGTGGCTCTGCTACACATCCTGACAAGTATTTGTTTCTTTGGGAAAGCCTTTCAAGTCACATTATAAA----CCTGTAATAAG----TGTCTCT--GTGGCTGAGT----------GGAGGTTGTGTG--GTACCTGGCCCCAGAAGTGGTGCAAAATGCACAGAGAGCATGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCCATTTTGG----CAGCATCTCCCAGCTACATCCTTGGATT---CTGTTTCGATCCAC----AAAGCCCATTCCC---CTTCCCTTCTGA-TGTCTTTGTGCGCATAAGGTGGGACCGGCCTATC-TGCAGTTTATAGTAAAGTTATGATGTTTTCCATCAAGTTAGAAGGGTTGGGATT-AAGGACTTTTTTC-CTTCAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14000442 364 - 14338769 AAAATGTGGCTCTGCTACAGATCCTGACAAGTATTTGTTTCTTTGGGAAAGCCTTTCAAGTCACATTATAAA----CCTGTAATAAG----TGTCTCT--GTGGCTGAGT----------GGAGGTTGTGTG--GTACCTGGCCCCAGAAGTGGTGCAAAATGCACAGAGAGCATGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCCATTTTGG----CAGCATCTCCCAGCTACATCCTTGGATT---CTGTTTCGATCCAC----AAAGCCCATTCCC---TTTCCCTTCTGA-TGTCTTTGTGCGCATAAGGTGGGACCGGCCTATC-TGCAGTTTATAGTAAAGTTATGATGTTTTCCATCAAGTTAGAAGGGTTGGGATT-AAGGACTTTTTTC-CTTCAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 938408 362 + 1946073 AAAATGTGGCTCTACTACAGATCCTGACAAGTATTTGTTTCTTTGGGAAAGCCTTTCAAGTCACATTATAAA----CCTGT--TAAG----TGTCTCT--GTGGCTGAGT----------GGAGGTTGTGTG--GTAGCTGGCCCCAGAAGTGGTGCAAAATGCACAGAAAGCATGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCCATTTTGG----CAGCATCTCCCAGCTACATCCTTGGATT---CTGTTTCGATCCAC----AAAGCCCATTCTC---TTTCCCTTCTGA-TGTCTTTGTGCGCATAAGGTGGGACCAGCCTGTC-TGCAGTTTATAGTAAAGTTATGATGTTTTCCATCAAGTTACAAGGGTTGGGATT-AAGGACTTTTTTC-CTTCAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1965575 368 - 2117846 AAAAAGTGGCTCTGCTACAGATCCTGATAAGTATTTCTTTCTTTGGGAAAGCCTTTCAAATCACATTATGAA----CCTGTAATAAG----TATCTCT--GTGGCTGAGT----------AGGGGTTGAGTG--GCAGCTGGACCCAGAAGTGGTACAAAATGCACAGAAAGCATGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCTGTTTTGG----CAGCATCTCCCAGCTACATCCTTGGCTT---CTGTTTTAATCCACAAAGAAAGCCTGTTCCCTTATTTCCCTTCCGA-CATCTTTGTGCCCAT-AGGTGGGCCCAGCCTGTC-TGCGTTTTATAGTAAAGTT---ATGTTTTCCATCAGGTTAGTAGGCTTGGGATTAAAGAACTTTTTTC-CTGCAT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1361802 381 - 1807191 AAAAAGTGGCTCTGCTACAGATCCTGATAAATATTTGTTTCTCTGGGAAAGGCTTTCAAGTCACATTATAAA----CCTATAATAAG----TATCTCT--GTGGCTAAGTGGGGGGAGGGGGGGGTTGAGTG--GTAGCTGGGCCCAGAAGTGGTGCAAAATGCACAGAAAGCATGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCTGTTTTGG----CAGCATCTCCCAGCTACATCCTTGGCTT---CTGTTTTGATCCACAAAGAAAGCCTGTTCCCTTATTTCCCTTCCAA-CATCTTTGTGCCCAT-AGGTGGGCCCAGCTTGTC-TGCGGTTTATAGTAAAGTTACGATGTTTTCCATCAGGTTAGTAAGCTTGGGATTAAAGAACTTTTTTC-CTTCAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 41709 371 + 5963231 AAAAAGTGGCTCTGCTACAGATCTTGATAAGTATTTGTTTCTCTGGGAAAGCCTTTCAAGTCACATTATAAA----CCTGTAATAAG----TATCTCT--GTGGCTGAGT----------GGGGGTTGAGTG--GTAGCTGGGCCCAGAAGTGGTGCAAAATGCACAGAAAGCATGACCAA---------------GGTCCAAATCTCTTGAGTGTGGCTGTTTTGG----CAGCATCTCCCGGCTACATCCTTGGCTT---CTGTTTTGATCCACAAAGAAAGCCTGTTCCCTTATTTCCCTTCTGA-CATCTTTGTGCCCAT-AGGTGGGCCCAGCCTGTC-TGCGGTTTACAGTAAAGTTATGATGTTTTCCATCAGGTTAGTAGGCTTGGGATTAAAGAACTTTTTTC-CTTCAT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5732355 364 + 108171978 AAAAAGTAGTTCTGCTGTTGACCCCAAGAAGTATCTGTTTCTTTGAGAAAGCCTTTCAAATCACATTATAAA------TATAACAAG----TGTCTCT--GTGGCTGAGT----------GGGGGATGGGTG--GTGGCTGGCCCT-GGAGAGGTGCAAAATGCACAGAAAGCATGACCAA---------------GGTCAAAATCTC-TGAGTGCAGCTGCTTTGG----CAGCCTCTCCCAGCTACATCCCTGGCCT---CCGTTTTGATCCATGAGGAAAGCCTGTTGCTTTAATTCCCTTCTTCGTGTCTTTGTACCCAC-AAGTGAGGCCAGCCTGTCTTGTAGTTTACAGTG-----ATGATGCTCTGAATCAGGTTAGAAGGTTTAGGATTAAAGGATTTTTCTC-CTTTAG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5096907 363 - 6317780 AAAAAGTAGTTCTGTTGTTGACCCTGAGAAGTA--TGTTTCTTTGAGAAAGCCCTTCAAATCAC---ATAAA------TATAACAAG----TGTCTCT--GTGGCTGCGT----------GGGGGATGGGTG--GTGGCTGGCCCT-GGAGAGGTACAAAATGCACAGAAAGCATGACCAA---------------GGTCAAAATCTC-TGAGCGCAGCTGCTTTGG----CAGCCTCTCCCAGCTACATCCCTGGCCT---CTTTTTTGATCCATGAGGAAAGCCTGTTGCCTTAATT-CCTTCCTAGTATCTTTCTACCCAA-AGGTGGGACCAGCCTATCTTGCAGTTTACAGTGAAGTTATGATGTTTTGAATTAGGTTAGAAGGCTTGGGATTAAACGACTTTTTCC-CTTCAT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36310347 344 - 42659167 AAAAAGTAGTTCTGCTGTTGACCCTGAGCAGTATCTGTTGCTTTGAGAAAGCCTTTCAGATCACATTATAAA------TTTAACAAG----GGTCTCT--GTAGCTGA---------------------GTG--TTGACTGGCCCTAGAAGTGGTGCAAAATGCACAGAAAGCATGACCAA---------------GGTCAAAA--TC-TAAGTGCAGCTGCTTTGG----CAGCCTCTGCCACCTATGACCCTGGCCT-----ATTTTGAGCCATGAGGAAAGCCTATTCCCTTAATTTTCTTCCTA------CTGTACCCAT-AGGTGGGA-TAGCCTGTC-TGCAGTATATGGTGAA---GTTAGGCCTTTAATCAGCTTAGAAGACTTGGAATGAAAATGTTATTTCC-CTTGaa i otoGar3.GL873526 C 0 I 165 s mm10.chr15 82832381 347 + 104043685 AGAAA--AGTTGTGCTACTGAAGCTGAAAAGTA----TTCCCTTGAGAACGCCTTTCAAGCTACATTTAAAAACTGCCCACAGTTAG----TATCTCTGGGTAAGGGAGT----------GGCAGTTGTGGGGTGTAGTTGGCTCCAGAAATAATGCaaaaaaagaagaaaaaaaaaaaaaaaaaGCAAAATGTGGGATCAAAATCCC---AGTGTAAGTGT---------CAGCCTCTCTTAATGATGTTCCTGGCCTCCACCACTCTGGGCCAAGAGGAGAG----------------CATTCTTA-T-TGCCTGTGTCCAT-AGGTA----TGGCCTACC-TTCAGTTTACAATGAAATCAGAATTTTTTCAATCAAGTTTGAAGG---------------CTTTTTTC-CTTCAT i mm10.chr15 C 0 C 0 s canFam3.chr10 46110643 334 - 69331447 AGAAAGTGGTTCTACTGCTGACTCTGA-AAGTGTTAGTTTCTTTGAGAAAGCTTTTCAAACCTCACTATAAA----CCTGT----AT----GGTCTCT--GTGGCCGAAT----------CAAGGTTGAGGG--GTGGCTAGCTCTGGAGGAGGAGCAAAATGCA-GGACAGCATGACCAA---------------GGTCAAAGTC---AACATGCAGCTGTGCTGG----CAG--TCTCCTAGTTACATC-------T---CT-----GATCCATGAGGAGAGCCTGTTCCCTGAATACCCTTCCTACTGCCTTTGTGCCTGT-AGATGGA-----------------TTTACAGTAAAGTTATGATGCTTTGAATCAGGCCAGAGGGCTTGGGATTAAAGGACTCTTTTCTCTTCAT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 81788 352 + 1056298 AAAAAGTAGTTCTGCTATTAACCCTGAAAAGTACGAACTTCCTTGGGAAAGTTCCTCGAACCACATTATACA----CCTATAAGAGATGTCTGTCTCT--GTAGATAAGT----------GGG------GTG--GGAACTGGTCTTGGAAGTGGAGCAAAATGC--AGACAGCACAACCAT---------------GGCCAAAAGCTC-TGAGTGTAGTTGCTCTAGAGAACAGCATTTTCCAGCTATATCCCTGGCCT---C------------CGAGGAGAGCTGGTTCCCTTAATTCCC-------TTTCTTTGTGCCAGC-AGACGGGACCAGTTTGCT-TGGAGTTTACAGTGAAGTTATGATGCTTTAAATCAGGTTAGAAAGCTTGGGATTGAAGGGCTTGTTTT-CTTCAT i dasNov3.JH570235 I 393 C 0 e saiBol1.JH378157 8876820 0 - 16357246 C a score=1844539.000000 s hg38.chr22_GL383582v2_alt 97927 131 + 162811 TAAGAA----TGTCCTTC-TTTGTCTTTCTGTACTTCATCTACCAAACAGAGGATGTCAGAAATTAGCCACAATCTTGAGCAGATAAAGAACATATTCAGAATACACACAGCTTTATACAATGGACTT-ACTCATTT s panTro5.chr22 28877809 131 + 37823149 TAAGAA----TGTCCTTC-TTTGTCTTTCTGTACTTCATCTACCAAACAGAGGACGTCAGAAATTAGCCACAATCTTGAGCAGATGAAGAACATATTCAGAATACACACAGCTTTATACAATGGACTT-ACTCATTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41152404 131 + 50109623 TAAGAA----TGTCCTTC-TTTGTCTTTCTGTACTTCATCTACCAAACAGAGGATGTCAGAAATTAGCCACAATCTTGAGCAGATGAAGAACATATTCAGAATACACACAGCTTTATACAATGGACTT-ACTCATTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175144 132 + 4464012 TAAGAA----TGTCCTTCTTTTGTCTTTCTGTACTTCATCTACCAAACAGAGGATGTCAGAAATTAGCCACAATCTTGAGCAGATGAAGAACATATTCAGAATACACACAGCTTTATACAATGGACTT-ACTCATTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671111 131 - 115148730 TAAGAA----TGTCCTTC-TTTGTCTTTCTGTACTTCATCTACCAAACAGAGGATGTCAGAAGTTAGCCACAATCTTGAGCAGATAAAGAGCATATTCAGAATACATACAGCTTTATATAATAGACTT-ATTCATTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84285806 131 + 92844088 TAAGAA----TGTCCTTC-TTTGTCTTTCTGTACTTCATCTACCAAACAGAGGATGTCAGAAATTAGCCACAATCCTGAGCAGATGAAGAACATATTCAGAATACACACAGCTTTATACAACAGACTT-GTTCATTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87630844 131 - 96509753 TAAGAA----TGTCCTTC-TTTGTCTTTCTGTACTTCATCTACCAAACAGAGGATGTCAGAAATTAGCCACAATCCTGAGCAGATGAAGAACATATTCAGAATACACACAGCTTTATACAACAGACTT-GTTCATTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7122661 131 - 13098629 TAAGAA----TGTCCTTC-TTTGTCTTTCTGTATTTCATCTACCAAACAGAGGATGTCAGAAATTAGCCACAATCCTGAGCAGATGAAGAACATATTCAGAATACACACAGCTTTATACAACAGACTT-GTTCATTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089447 131 - 4483953 TAAGAA----TGTCCTTC-TTTGTCTTTCTGTACTTCATCTACCAAACAGAGGATGTCAGAAATTAGCCACAATCCTGAGCAGATGAAGAACATATTCAGAATACACACAGCTTTATACAACAGACTT-GTTCATTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24719783 131 + 33263144 TAAGAA----TGTCCTTC-TTTGTCTTTCTGTACTTCATCTACCAAACAGAGGATGTCAGAAATTAGCCACAATCCTGAGCAGATGAAGAACATATTCAGAATACACACAGCTTTATACAACGGACTT-GTTCATTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14000806 131 - 14338769 TAAGAA----TGTCCTTC-TTTGTCTTTCTGTACTTCATCTACCAAACAGAGGATGTCAGAAATTAGCCACAATCCTGAGCAGATGAAGAACATATTCAGAATACACACAGCTTTATACAACAGACTT-GTTCATTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 938770 124 + 1946073 TACGAA----TGTCCTTC-TTTGTCTTTCTGTACTTCATCTACCAAACAGAG-------GAAATGAGCCACAATCCTGAGCAGATGAAGAACATATTCAGAATATACATAGCTTTATACAACAGACTT-GTTCATTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1965943 128 - 2117846 TAAGAA----TGTCCTTC-CTTGTCCTTCTGAACTTCAGCTGACAAATGGGGGATGCCATAAATTAGCCACAATCTTGAGCAGAT---GAATATATTTAGAATACACATAGCTTTATACAATGGACTT-GTTCACTC i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362183 132 - 1807191 TAAGAA----TGTCCTTC-CTTGTCCTTCTGAACTTCATCTGACAAACAGGGGATGCCATAAATTAGCCACAATCTTGAGCAGATGAAGAATATATTTAGAATACACATAGCTTTATACAATGGACTTGGTTCACTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42080 130 + 5963231 GAAGAA----TGTCCTTC-CTTGTCCTTCTGAACTTCATCTGACCAAT-GGGGATGCCATAAATTAGCCACAATCTTGAGCAGATGAAGAATATATTTAGAATACACATAGCTTTATACAATGGACTT-GTTCACTT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5732719 135 + 108171978 TAATAATATCTATCCTTC-CTTGTCTTTCTACACTTCATTTGCCAAACAGAGGGCACCAGAATTTAGTCACAACCATGAGCACATAAAGAATACATTTAGAATACACATAGCTTTATGCAATGGATTT-GTTCATTT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5097270 130 - 6317780 TAATAA----TGTCCTTC-CTTGTCTTTCTATACTTCATCTGCCAAACAGAGGACACCAGAATTTA-CCACAACCTTGAACAGATAAAGAATATATTTAGAGTACACATAGCTTTATACAATGGATTT-GTTCATTT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36310856 126 - 42659167 TGATAA----TGTCCTTC-CTTGTCTTTCCGTATTTCATCTTCTAAAGAGAGAACACCAGAATTTAGCTACAACCTTGAGCAGATAAAGAACATATTTAACATACACATGGC-TTACACAATGGATGT-GTTC---- i otoGar3.GL873526 I 165 C 0 s mm10.chr15 82832728 112 + 104043685 --------------CTTT-ACAAAATTTCTGTGTTTCACCTGCCA------GGATAGCAGAACTTAGTTACAACCTTGATCAGG-GAAGAATATATT-ATAGTACACACAAC-TTAGACATTAGATTT-TATCATTT i mm10.chr15 C 0 I 662 s canFam3.chr10 46110977 131 - 69331447 TAACAA----TGTCCTTC-CTTGTCTTTCTGCACTTCATCTGCCAAACAGAGGAGGCCAGGATTTAGCTACAACCTTGAGCACACGAAGAATATATTTAGAGTATACATGCCTCTATACAATGGATTT-GTTCACTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 82140 123 + 1056298 TAACAA----TGTCCTTC-CTTGTCTTTCTCCACTTCATCTACCAAATAGTGGAGGTCAGAATTTAGCCACAACCTTGA--------AGAACATACTTAAAGTACACACGGCTTAATGCAATGGATTT-GTTCATTT i dasNov3.JH570235 C 0 C 0 e saiBol1.JH378157 8876820 0 - 16357246 C a score=551819.000000 s hg38.chr22_GL383582v2_alt 98058 43 + 162811 TAACACTGAGCAAACAAATAATGAGAAGTTAGTAGGTCTAAGA s panTro5.chr22 28877940 43 + 37823149 TAACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCTAAGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41152535 43 + 50109623 TAACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCTAAGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175276 43 + 4464012 TAACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCTAAGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671242 42 - 115148730 TAACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCTAAG- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84285937 43 + 92844088 TTACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCCAAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87630975 43 - 96509753 TTACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCCAAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7122792 43 - 13098629 TTACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCCAAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089578 43 - 4483953 TTACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCTAAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24719914 43 + 33263144 TAACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCTAAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14000937 43 - 14338769 TTACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCTAAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 938894 43 + 1946073 TAACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCTAAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966071 43 - 2117846 CATCAGTGAGCAAACAAATAATGAAAAGTTCGTAGGTCTAAGA i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362315 43 - 1807191 CACCACTGAGCAAACAAACAATGAAAAGTTGATAGGTCTAAGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42210 43 + 5963231 CACCACTGAGCAAACAAATAATGAAAAGTTGGTAGGTCTAAGA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5732854 43 + 108171978 TATCATTCAGCAAACAAATAATGAAAGGTTAATATGTCTAAGA i micMur3.chr7 C 0 I 198 s proCoq1.NW_012136747v1 5097400 43 - 6317780 TATCATTCAGCAAACAAATAATGAAAGGTTAATAGGTCTAAGA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36310982 42 - 42659167 -ATCATTCAGCAAACAAATAATGCAAAGTTAATGGGTCTGAGA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46111108 40 - 69331447 TATGATTCAGCAAACAAATACTGTAAAAT---CAGGTCTCAGA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 82263 38 + 1056298 TGTCATTC----AATGAATAAAGAAAACTTA-TAGATCTCAAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=156258.000000 s hg38.chr22_GL383582v2_alt 98101 16 + 162811 CGCAGCTGGGGAAGGA s panTro5.chr22 28877983 16 + 37823149 CGCAGCTGGGGAAGGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41152578 16 + 50109623 CGCAGCTGGGGAAGGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175319 16 + 4464012 CGCAGCTGGGGAAGGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671284 13 - 115148730 ---AGCTGGGGAAGGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84285980 16 + 92844088 TGCAGGTGGGGAAGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631018 16 - 96509753 TGCAGGTGGGGAAGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7122835 16 - 13098629 TGCAGGTGAGGAAGGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089621 16 - 4483953 TGCAGGTGGGGAAGGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24719957 16 + 33263144 TGCAGGTGGGGAAGGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14000980 16 - 14338769 TGCAGGTGGGGAAGGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 938937 16 + 1946073 CGCAGGTGGGGAAGGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966114 16 - 2117846 TGTACCTGGGGAAGGT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362358 15 - 1807191 TGTACCT-GGGAAGGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42253 16 + 5963231 TGTACCTGGGGAAGGC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5097443 16 - 6317780 TGCAAATGGGAAAGGA i proCoq1.NW_012136747v1 C 0 I 183 s otoGar3.GL873526 36311024 16 - 42659167 CAAAGGTGGGAAAGGA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46111148 16 - 69331447 TACAACTGGGCAAGGG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 82301 16 + 1056298 CAAAGCTAGGGAAAGG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e micMur3.chr7 5732897 198 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=396179.000000 s hg38.chr22_GL383582v2_alt 98117 39 + 162811 GGTC-TTTTCTCCAGAAGATTCTGTCACAT--ACCTCTTTTT s panTro5.chr22 28877999 39 + 37823149 GGTC-TTTTCTCCAGAAGATTCTGTCACAT--ACCTCTTTTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41152594 39 + 50109623 GGTC-TTTTCTCCAGAAGATTCTGTCACAT--ACCTCTTTTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175335 39 + 4464012 GGTC-TTTTCTCCAGAAGATTCTGTCACAT--ACCTCTTTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671297 39 - 115148730 GGTC-TTTTCTCCAGAAGATTCTGTCACAT--ACCTCTTTTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84285996 41 + 92844088 GGTC-TTTTCTCCAGAAGATTCTGTCACATATACCTCTTTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631034 41 - 96509753 GGTC-TTTTCTCCAGAAGATTCTGTCACATACACCTCTTTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7122851 41 - 13098629 GGTC-TTTTCTCCAGAAGATTCTGTCACATACACCTCTTTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089637 41 - 4483953 GGTC-TTTTCTCCAGAAGATTCTGTCACATACACCTCTTTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24719973 41 + 33263144 GGTC-TTTTCTCCAGAAGATTCTGTCACATACACCTCTTTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14000996 41 - 14338769 GGTC-TTTTCTCCAGAAGATTCTGTCACATACACCTCTTTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 938953 42 + 1946073 GGTCTTTTTCTCCAGAAGATTCTGTCACATACACCTCTTTTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966130 39 - 2117846 GGTC-TTTTCTCCAGAAGACTC--TCACATACACCTCTTTCT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362373 41 - 1807191 GGTC-TTTTCTCTAGGAGACTCTATCACATACACCTCTTTCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42269 41 + 5963231 GGTC-TTTTCTCCAGAAGACTCTATCACATACACCTCTTTCT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36311040 37 - 42659167 ----TATTTCTTTAGATTACTATACCATATATACTTCTTTC- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46111164 36 - 69331447 TGTC-TTTTCTCTAGAAGACTCTATCACATGTACTTT----- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 82317 39 + 1056298 TGTC-TTTTCTCTTGAAGATTTTATCACATACATCATTTT-- i dasNov3.JH570235 C 0 I 1323 e mm10.chr15 82832840 662 + 104043685 I e proCoq1.NW_012136747v1 5097459 183 - 6317780 I e micMur3.chr7 5732897 198 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=169297.000000 s hg38.chr22_GL383582v2_alt 98156 16 + 162811 ATGCCATTGTTGCTTT s panTro5.chr22 28878038 16 + 37823149 ATGCCATTGTTGCTTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41152633 16 + 50109623 ATGCCATTGTTGCTTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175374 16 + 4464012 ATGCCATTGTTGCTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671336 16 - 115148730 ATGCCATTGTTGCTTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84286037 16 + 92844088 ATGCCATTGTTGCTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631075 16 - 96509753 ATGCCATTGTTGCTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7122892 16 - 13098629 ATGCCATTGTTGCTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089678 16 - 4483953 ATGCCATTGTTGCTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720014 16 + 33263144 ATGCCATTGTTGCTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001037 16 - 14338769 ATGCCATTGTTGCTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 938995 16 + 1946073 ATGCCATTGTTGCTTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966169 16 - 2117846 ATGCCATTGTTGCTTT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362414 16 - 1807191 ATGCCATTGTTGCTTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42310 16 + 5963231 ATGCCATTGTTGCTTT i aotNan1.NW_018512383v1 C 0 I 1 s otoGar3.GL873526 36311077 14 - 42659167 -TGTTATT-TTGCTTT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46111200 14 - 69331447 -TGTTGTTGTTCTTT- i canFam3.chr10 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e dasNov3.JH570235 82356 1323 + 1056298 I e proCoq1.NW_012136747v1 5097459 183 - 6317780 I e micMur3.chr7 5732897 198 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=36063.000000 s hg38.chr22_GL383582v2_alt 98172 18 + 162811 AAAAAATCCAGATTCTCA s panTro5.chr22 28878054 18 + 37823149 AAAAAATCCAGATTCTCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41152649 18 + 50109623 AAAAAATCCAGATTCTCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175390 18 + 4464012 AAAAAATCCAGATTCTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671352 18 - 115148730 AAAAAATCCAGATTCTCA i nomLeu3.chr7b C 0 C 0 s aotNan1.NW_018512383v1 42327 18 + 5963231 AAAAAATCCACATTCTCC i aotNan1.NW_018512383v1 I 1 C 0 s otoGar3.GL873526 36311091 17 - 42659167 -ATAAATCCAGATTTTTA i otoGar3.GL873526 C 0 I 5 s canFam3.chr10 46111214 18 - 69331447 TGTAAATCCAGATTTTCA i canFam3.chr10 C 0 I 83 e mm10.chr15 82832840 662 + 104043685 I e dasNov3.JH570235 82356 1323 + 1056298 I e proCoq1.NW_012136747v1 5097459 183 - 6317780 I e micMur3.chr7 5732897 198 + 108171978 I e cebCap1.NW_016107750v1 1362430 0 - 1807191 C e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1966185 0 - 2117846 C e colAng1.NW_012115588v1 939011 0 + 1946073 C e manLeu1.NW_012102031v1 14001053 0 - 14338769 C e chlSab2.chr19 24720030 0 + 33263144 C e cerAty1.NW_011999588v1 4089694 0 - 4483953 C e macNem1.NW_012012688v1 7122908 0 - 13098629 C e macFas5.chr10 87631091 0 - 96509753 C e rheMac8.chr10 84286053 0 + 92844088 C a score=332287.000000 s hg38.chr22_GL383582v2_alt 98190 309 + 162811 ggccgggcatggtggctcacgcctgtaattccagcactttgtgaggccgaggcgggcggatcacctgaggtcacgagtttgagaccaggctggccaacacagtgaaaccctgtctctacta----------------aaaatac-aaaaattagctgggtgtggtggtgcatggctgtaatcccagctactcgggaggctgaggcaggagaatcgtttgaacctgggaggtggaggttgcagtgag-cgagatcatgccattgtactccagcctgggcaacaagagtgaaact-ccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaa s panTro5.chr22 28878072 295 + 37823149 ggccgggcgtggtggctcatgcctgtaattccagcactttgtgaggctgaggcgggcggatcacctgaggtcacgagtttgagaccaggctggccaacacagtgaaaccctgtctctacta----------------aaaatac-aaaaattagctgggcgtggtggtgcacggctgtaatcccagctactcgggaggctgaggcaggagaatcgtttgaacctgggaggtggaggttgcagtgag-cgagatcatgccattgtactccagcctggacaacaagagtgaaact-ccgtctcaaaaaaaaaaaaa-------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41152667 300 + 50109623 ggccgggcgtggtggctcacgcctgtaattccagcactttgtgaggccgaggcgggcggatcacctgaggtcacgagtttgagaccaggctggccaacacagtgaaaccctgtctctacta----------------aaaatac-aaaaattagctgggcgtggtggtgcacggctgtaatcccagctactcgggaggctgaggcaggagaatcgtttgaacctgggaggtggaggttgcagtgag-cgagatcatgccattgtactccagcctgggcaacaagagtgaaact-ccgtctacaaaaaaaaaaaa---------aaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175408 295 + 4464012 ggccaggcatggaggctcatgcctgtaatcccagcactttgtgaggccgaggtgggcggaccacctgaggtcacgagtttgagaccaggctggccaacacagtgaaaccctgtctctacta----------------aaaatac-aaaaattagctgggcgtggtggtgcacggctgtaatcccagctactcgggaggctgaggcaggagaatcgtttgaacctgggaggtggaggttgcagtgag-cgagatcatgccattgtactccagcctgggcaacaagagtgaaact-ccgtctcaaaaaaaaaaaaa-------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671370 324 - 115148730 ggctaggcgtggtggctcacgcctgtaatcccagcactttgtgaggctgaggcggaaggatcacctgaggtcgcaagtttgagaccaggctggccaacacggtgaaaccctgtctctactaaaaatacaaaaattagaaaatac-aaaaattagctgggcgtggtggtgcacgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcgga-gttgcagtgag-cgagatcatgccattgcactccagcctgggcaacaagagtgaaact-ccgtttcaaaaaaaaaaaaaaaaaaaaaaaaaaa i nomLeu3.chr7b C 0 C 0 s aotNan1.NW_018512383v1 42345 248 + 5963231 ggccgggcgcggtggctcac----------------------------------------------gaggtcaagagatcaagaccatcctggtcaacatggtgaaaccccgcctctacta----------------aaaatacgaaaaattagctgggcgtggtggcgcgtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcctgaacccaggaggcggaggttgcagtgagccgagatcacgccattgcactccagcctgggtaac---agtgaaactcccgtctccaaaaaaaaaaa--------------- i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e dasNov3.JH570235 82356 1323 + 1056298 I e canFam3.chr10 46111232 83 - 69331447 I e otoGar3.GL873526 36311108 5 - 42659167 I e proCoq1.NW_012136747v1 5097459 183 - 6317780 I e micMur3.chr7 5732897 198 + 108171978 I e cebCap1.NW_016107750v1 1362430 0 - 1807191 C e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1966185 0 - 2117846 C e colAng1.NW_012115588v1 939011 0 + 1946073 C e manLeu1.NW_012102031v1 14001053 0 - 14338769 C e chlSab2.chr19 24720030 0 + 33263144 C e cerAty1.NW_011999588v1 4089694 0 - 4483953 C e macNem1.NW_012012688v1 7122908 0 - 13098629 C e macFas5.chr10 87631091 0 - 96509753 C e rheMac8.chr10 84286053 0 + 92844088 C a score=910.000000 s hg38.chr22_GL383582v2_alt 98499 1 + 162811 a s panPan2.chr22 41152967 1 + 50109623 a i panPan2.chr22 C 0 C 0 s nomLeu3.chr7b 106671694 1 - 115148730 a i nomLeu3.chr7b C 0 C 0 s cebCap1.NW_016107750v1 1362430 1 - 1807191 A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42593 1 + 5963231 a i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e dasNov3.JH570235 82356 1323 + 1056298 I e canFam3.chr10 46111232 83 - 69331447 I e otoGar3.GL873526 36311108 5 - 42659167 I e proCoq1.NW_012136747v1 5097459 183 - 6317780 I e micMur3.chr7 5732897 198 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C e calJac3.chrUn_GL286373 1966185 0 - 2117846 C e colAng1.NW_012115588v1 939011 0 + 1946073 C e manLeu1.NW_012102031v1 14001053 0 - 14338769 C e chlSab2.chr19 24720030 0 + 33263144 C e cerAty1.NW_011999588v1 4089694 0 - 4483953 C e macNem1.NW_012012688v1 7122908 0 - 13098629 C e macFas5.chr10 87631091 0 - 96509753 C e rheMac8.chr10 84286053 0 + 92844088 C e gorGor5.CYUI01015375v1 3175703 0 + 4464012 C e panTro5.chr22 28878367 0 + 37823149 C a score=1911.000000 s hg38.chr22_GL383582v2_alt 98500 1 + 162811 a s panPan2.chr22 41152968 1 + 50109623 a i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175703 1 + 4464012 a i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671695 1 - 115148730 a i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1966185 1 - 2117846 A i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362431 1 - 1807191 A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42594 1 + 5963231 a i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e dasNov3.JH570235 82356 1323 + 1056298 I e canFam3.chr10 46111232 83 - 69331447 I e otoGar3.GL873526 36311108 5 - 42659167 I e proCoq1.NW_012136747v1 5097459 183 - 6317780 I e micMur3.chr7 5732897 198 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C e colAng1.NW_012115588v1 939011 0 + 1946073 C e manLeu1.NW_012102031v1 14001053 0 - 14338769 C e chlSab2.chr19 24720030 0 + 33263144 C e cerAty1.NW_011999588v1 4089694 0 - 4483953 C e macNem1.NW_012012688v1 7122908 0 - 13098629 C e macFas5.chr10 87631091 0 - 96509753 C e rheMac8.chr10 84286053 0 + 92844088 C e panTro5.chr22 28878367 0 + 37823149 C a score=24843.000000 s hg38.chr22_GL383582v2_alt 98501 3 + 162811 aaa s panPan2.chr22 41152969 3 + 50109623 aaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175704 3 + 4464012 aaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671696 3 - 115148730 aaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84286053 3 + 92844088 AAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631091 3 - 96509753 AAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7122908 3 - 13098629 AAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089694 3 - 4483953 AAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720030 3 + 33263144 AAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001053 3 - 14338769 AAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939011 3 + 1946073 AAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966186 3 - 2117846 AAA i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362432 3 - 1807191 AAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42595 3 + 5963231 aaa i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e dasNov3.JH570235 82356 1323 + 1056298 I e canFam3.chr10 46111232 83 - 69331447 I e otoGar3.GL873526 36311108 5 - 42659167 I e proCoq1.NW_012136747v1 5097459 183 - 6317780 I e micMur3.chr7 5732897 198 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C e panTro5.chr22 28878367 0 + 37823149 C a score=182176.000000 s hg38.chr22_GL383582v2_alt 98504 19 + 162811 aaaTCCAGATTCTCACCCG s panTro5.chr22 28878367 16 + 37823149 ---TCCAGATTCTCACCCG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41152972 19 + 50109623 aaaTCCAGATTCTCACCCG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175707 19 + 4464012 aaaTCCAGATTCTCACCCG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671699 19 - 115148730 aaaTCCAGATTCTCACCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84286056 19 + 92844088 AAATCCAGATTCTCACCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631094 19 - 96509753 AAATCCAGATTCTCACCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7122911 19 - 13098629 AAATCCAGATTGTCACCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089697 19 - 4483953 AAATCCAGATTCTCACCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720033 19 + 33263144 AAATCCAGATTCTCACCCG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001056 19 - 14338769 AAATCCAGATTCTCACCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939014 19 + 1946073 AAATCCAGATTCTCACCCG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966189 19 - 2117846 AAATCCAGATTCTCACCCA i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362435 19 - 1807191 AAATCCAGATTCTCACCCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42598 19 + 5963231 aaaTCCAGATTCTCACCCA i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 83679 19 + 1056298 AAATTCAGATTTTCATATG i dasNov3.JH570235 I 1323 C 0 e mm10.chr15 82832840 662 + 104043685 I e canFam3.chr10 46111232 83 - 69331447 I e otoGar3.GL873526 36311108 5 - 42659167 I e proCoq1.NW_012136747v1 5097459 183 - 6317780 I e micMur3.chr7 5732897 198 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=113992.000000 s hg38.chr22_GL383582v2_alt 98523 11 + 162811 TGAGCTGTGTT s panTro5.chr22 28878383 11 + 37823149 TGAGCTGTGTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41152991 11 + 50109623 TGAGCTGTGTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175726 11 + 4464012 TGAGCTGTGTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671718 11 - 115148730 TGAGCTGTGTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84286075 11 + 92844088 TGAGCTGTGTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631113 11 - 96509753 TGAGCTGTGTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7122930 11 - 13098629 TGAGCTGTGTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089716 11 - 4483953 TGAGCTGTGTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720052 11 + 33263144 TGAGCTGTGTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001075 11 - 14338769 TGAGCTGTGTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939033 11 + 1946073 TGAGCTGTGTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966208 11 - 2117846 TGAGCTATTTT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362454 11 - 1807191 TGAGCTGTGTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42617 11 + 5963231 TGAGCTGTGTT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36311113 10 - 42659167 TAAGCTG-GTT i otoGar3.GL873526 I 5 C 0 s dasNov3.JH570235 83698 11 + 1056298 TTGGGTCTGTT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e canFam3.chr10 46111232 83 - 69331447 I e proCoq1.NW_012136747v1 5097459 183 - 6317780 I e micMur3.chr7 5732897 198 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=806124.000000 s hg38.chr22_GL383582v2_alt 98534 95 + 162811 ATGAGGAAGGGAC-CTCTGCAAT----------AATGTGAAGGTAACCCTTGGCTAACGAAA---GTAAAAACACCAGACCCATGCTTCTT--CAGAATCATAAAGTGT-AA s panTro5.chr22 28878394 96 + 37823149 ATGAGGAAGGGAC-CTCTGCAAT----------AATGTGAAGGTAACCCTTGGCTAACGAAA---GTAAAAACACCAGACCCATGCTTCTT--CAGAATCATAAAGTGTTAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153002 95 + 50109623 ATGAGGAAGGGAC-CTCTGCAAT----------AATGTGAAGGTAACCCTTGGCTAACGAAA---GTAAAAACACCAGACCCATGCTTCTT--CAGAATCATAAAGTGT-AA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175737 95 + 4464012 ATGAGGAAGGGAC-CTCTGCAAT----------AATGTGAAGGTAACCCTTGGCTAACGAAA---GTAAAAACACCAGACCCATGCTTCTT--CAGAATCATAAAGTGT-AA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671729 95 - 115148730 ATGAGGAAGGGAC-CTCTGCAGT----------AATGTGAAAGTAACTCTTGGCTAACGAAG---GTAAAAACACCAGACCCATGCTTCTT--CAGAATCATAAAGTAT-AA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84286086 97 + 92844088 ATGAGGAAGGGAC-CTCTGCAGT----------AACGTGAAGGTAACCCTTGGCTAATGAAGT-TGTAAAAACACCAGACTGGTGCTTCTT--CAAAATCATAAAGTGT-AA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631124 97 - 96509753 ATGAGGAAGGGAC-CTCTGCAGT----------AACGTGAAGGTAACCCTTGGCTAATGAAGT-TGTAAAAACACCAGACTGGTGCTTCTT--CAAAATCATAAAGTGT-AA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7122941 97 - 13098629 ATGAAGAAGGGAC-CTCTGCAGT----------AACGTGAAGGTAACCCTTGGCTAATGAAGT-TGTAAAAACACCAGACTGGTGCTTCTT--CAAAATCATAAAGTGT-AA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089727 97 - 4483953 ATGAGGAAGGGAC-CTCTGCAGT----------AACGTGAAGGTAACCCTTGGCTAACGAAGT-TGTAAAAACACCAGACTGGTGCTTCTT--CAAAATCATAAAGTGT-AA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720063 97 + 33263144 ATGAGGAAGGGAC-CTCTGCAGT----------AACGTGAAGGTAACCCTTGGCTAACGAAGT-TGTAAAAACACCAGACTGGTGCTTCTT--CAAAATCATAAAGTGT-AA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001086 97 - 14338769 ATGAGGAAGGGAC-CTCTGCAGT----------AACGTGAAGGTAACCCTTGGCTAACGAAGT-TGTAAAAACACCAGACTGGTGCTTCTA--CAAAATCATAAAGTGT-AA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939044 97 + 1946073 ATGAGGAAGGGAC-CTCTGCAGT----------AATGTGAAGGTAACCCTTGGCTAATGAAGT-TGTAAAAACACCAGACTGGTGCTTCTT--CAAAATCATAAAGTGT-AA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966219 91 - 2117846 A----CAAGGGAC-TTCTGTGGT----------AATGTGAAGGTAACCCTTGGCTAACAAAG---GTAAAAACACCAAGCTGGTGCTTCTT--CAGAATCATAAAGTGT-AA i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362465 93 - 1807191 AGAAGCAAGGGAC-CTCTGTGGT----------AATGTGAAGGTAACCCTTGGCTAATGAAG---GTAAAAACACCAGGCTGGTGCTTCTT--CAGACTCAT--AGTGT-AA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42628 95 + 5963231 ACAAGGAAGGGAC-CTCTGTGGT----------AACGTGAAGGTAACCCTTGGCTAACGAAG---GTAAAAACACCAGGCTGGTGCTTCTT--CAGAATCATAAAATGT-AA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36311123 95 - 42659167 GAAAGTAAGGTGG-ATCTGCTGT----------TATGTGAAGGGAGCCTTCGG--AACACAG---GACAAAAGGCCAGGGAGGTGCTCCTTTACAGAATCATGAAATGC-GA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46111315 38 - 69331447 -------------------------------------------------------------------------GTCAGGCTGGGGCTTCTTCACAGAATCACGAAATGC-AA i canFam3.chr10 I 83 C 0 s dasNov3.JH570235 83709 107 + 1056298 GAAAGCAAGGTACAATCTGCCGTACCTCTATCCAATGTGAAATTAGCCACCAGCTAAC--AGTCTGTAAAA--TCCAGGCTGGCATTTCTTTATACAATCATGAAATGT-AG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e proCoq1.NW_012136747v1 5097459 183 - 6317780 I e micMur3.chr7 5732897 198 + 108171978 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=5907.000000 s hg38.chr22_GL383582v2_alt 98629 1 + 162811 G s panTro5.chr22 28878490 1 + 37823149 G i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153097 1 + 50109623 G i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175832 1 + 4464012 G i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671824 1 - 115148730 G i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84286183 1 + 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631221 1 - 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123038 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089824 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720160 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001183 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939141 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966310 1 - 2117846 G i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362558 1 - 1807191 G i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42723 1 + 5963231 G i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5733095 1 + 108171978 G i micMur3.chr7 I 198 C 0 s otoGar3.GL873526 36311218 1 - 42659167 G i otoGar3.GL873526 C 0 I 12 s canFam3.chr10 46111353 1 - 69331447 G i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 83816 1 + 1056298 G i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e proCoq1.NW_012136747v1 5097459 183 - 6317780 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=25772.000000 s hg38.chr22_GL383582v2_alt 98630 2 + 162811 TT s panTro5.chr22 28878491 2 + 37823149 TT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153098 2 + 50109623 CT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175833 2 + 4464012 TT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671825 2 - 115148730 TT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84286184 2 + 92844088 TT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631222 2 - 96509753 TT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123039 2 - 13098629 TT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089825 2 - 4483953 TT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720161 2 + 33263144 TT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001184 2 - 14338769 TT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939142 2 + 1946073 TT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966311 2 - 2117846 TT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362559 2 - 1807191 TT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42724 2 + 5963231 TT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5733096 2 + 108171978 TT i micMur3.chr7 C 0 C 0 s canFam3.chr10 46111354 2 - 69331447 TT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 83817 2 + 1056298 TT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e otoGar3.GL873526 36311219 12 - 42659167 I e proCoq1.NW_012136747v1 5097459 183 - 6317780 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=707282.000000 s hg38.chr22_GL383582v2_alt 98632 54 + 162811 ATTCTACTGAATGTCAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG s panTro5.chr22 28878493 54 + 37823149 ATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153100 54 + 50109623 ATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175835 54 + 4464012 ATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671827 54 - 115148730 ATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84286186 54 + 92844088 ATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631224 54 - 96509753 ATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123041 54 - 13098629 ATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089827 54 - 4483953 ATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720163 54 + 33263144 ATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGA i chlSab2.chr19 C 0 I 300 s manLeu1.NW_012102031v1 14001186 54 - 14338769 ATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939144 54 + 1946073 ATTCTATTGAATGTGAAGAAGGCAGTTCGACTTCTTAACGAGCTGTTCTCTGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966313 51 - 2117846 ATTCTACTGAATGT---GAAGGCAGTTTGACTTCCTAATGAGCTGTTCTCTGGG i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362561 54 - 1807191 ATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAATGAGCTGTTCTCTGGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42726 54 + 5963231 ATTCTACTGAGTGTGAAGAAGGCAGTTTGACTTCCTAATGAGTTGTTCTCTGGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5733098 53 + 108171978 ATTCTACTGTATGTAAGGAAAGCATTTTGACTTCCTAATGAGCTG-TTTATGGG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5097642 54 - 6317780 ATTCTATTGAATATAAAGAAAGCATTTTGACTTCCTAATGAGCTGTTTTATGGG i proCoq1.NW_012136747v1 I 183 C 0 s canFam3.chr10 46111356 54 - 69331447 ATTCTATTGAAAATGAAGGAAAGATTTTGACTTCCTGACAAGCTGTTCTGAGGG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 83819 53 + 1056298 CTTGGACTAGATGAAGAAAAGG-ATTTTGACTTCTTAATGAGCTATGCTTTGGG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e otoGar3.GL873526 36311219 12 - 42659167 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=2819687.000000 s hg38.chr22_GL383582v2_alt 98686 240 + 162811 ------------------------ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGC-ATGTCCAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGTCT-----------------------------TTCCCCTTGA-------CA-----------TGCAGGTTTCTCT--------------AAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGGGCTCTTTTCTTTGATATTTAAGTTCCCTTAGGAGTTGATGGTATCGACTTCAG s panTro5.chr22 28878547 240 + 37823149 ------------------------ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGC-ATGTCCAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGTCT-----------------------------TTCCCCTTGA-------CG-----------TGCAGGTTTCTCT--------------AAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGGGCTCTTTTCTTTGATATTTAAGTTCCCTTAGGAGTTGATGGTATCGACTTCAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153154 240 + 50109623 ------------------------ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGC-ATGTCCAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGTCT-----------------------------TTCCCCTTGA-------CG-----------TGCAGGTTTCTCT--------------AAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGGGCTCTTTTCTTTGATATTTAAGTTCCCTTAGGAGTTGATGGTATCGACTTCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3175889 239 + 4464012 ------------------------ACTTTTAATTTGCCTTATTAAGGTGTCAATCCTGATTCCACAGCATAAAACTGCAATGTCCAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGTCT-----------------------------TTCCCCTTGA-------CA-----------TGCAGGTTTCTCT--------------AAAGGTTGTAAGACAC--TGTGATCAAGGTGCCTTTTATTCTCAGGGCTCTTTTCTTTGATATTTAAGTTCCCTTAGGAGTTGATGGTATCGACTTCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106671881 234 - 115148730 ------------------------ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCCTAAAACTGCAATGTCCAGAAAGTGGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGTCC-----------------------------TTCCCCTTGA-------CG-----------TGCAGGTTTCTCT--------------AAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGTGCTCTTTTC-------TTTAAGTTCCCTTATGAGTTGATGGAATCGACTTCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84286240 241 + 92844088 ------------------------ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGCAATGTACAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGACT-----------------------------TTCCCCCTGA-------CG-----------TGCAGGTTTCTCT--------------AAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGTGCTCTTTTCTTTGATATTTAAGTTCCTTTATGAGTTGATGGTATCGACTTCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631278 241 - 96509753 ------------------------ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGCAATGTACAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGACT-----------------------------TTCCCCCTGA-------CG-----------TGCAGGTTTCTCT--------------AAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGTGCTCTTTTCTTTGATATTTAAGTTCCTTTATGAGTTGATGGTATCGACTTCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123095 241 - 13098629 ------------------------ACTTTTAATTTGCCTTACTAATGTGTCAATCCTGATTCCACAGCATAAAACTGCAATGTACAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGACT-----------------------------TTCCCCCTGA-------CG-----------TGCAGGTTTCTCT--------------AAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGTGCTCTTTTCTTTGATATTTAAGTTCCTTTATGAGTTGATGGTATCGACTTCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4089881 241 - 4483953 ------------------------ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGCAATGTACAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAAGAATTTGATCAGGCTGGACT-----------------------------TTCCCCCTGA-------CG-----------TGCAGGTTTCTCT--------------AAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGTGCTCTTTTCTTTGATATTTAAGTTCCCTTATGAGTTGATGGTATCGACTTCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720517 241 + 33263144 ------------------------ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGCAATGTACAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAACAACTTGATCAGGCTGGACT-----------------------------TTCCCCCTGA-------TG-----------TGCAGGTTTCTCT--------------AAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGTGCTCTTTTCTTTGATATTTAAGTTCCCTTATGAGTTGATGGTATCGACTTCAG i chlSab2.chr19 I 300 C 0 s manLeu1.NW_012102031v1 14001240 241 - 14338769 ------------------------ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGCAATGTACAGAAAGTAGAAACATGGGTTGGATGAAAATTATTAAGAACTTGATCAGGCTGGACT-----------------------------TTCCCCCTGA-------CG-----------TGCAGGTTTCTCT--------------AAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGTGCTCTTTTCTTTGATATTTAAGTTCCCTTATGAGTTGATGGTATCGACTTCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939198 240 + 1946073 ------------------------ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGCAATGTACAGAAAGTAGAAACATGGGTTGGATGAAAATTAGTAAGAACTTGATCAGGCTGGACT-----------------------------TTCCCCCTGA-------CG-----------TGCAGGTTTCTCT--------------AAAGGTTGTAAGACACTGTGTGATCAAGTTGCCTTTTATTCTCAGTGCTCTTTTCTTTGATATTGAAGTTCCCTTATGAGTTGATGGTATTGAC-TCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966364 237 - 2117846 ------------------------ACTTTAAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCACAAAACTGCTATGTCCAGCAAGCAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATTGGGCTGGTCT-----------------------------TTCCCTCTGA-------CA-----------TGCAGGTTTCTCT--------------AAAGGTTTTAAGAC----TGTGATCAAGGTGCCTTTTATTCTTAGTGCTCTTTCCTTTGATATGTAAGTTGCCTTAGAAATTGATGGTATCAACTCCAA i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1362615 237 - 1807191 ------------------------ACTTCTAATTTGCCTTATTAATGTGTCAACCCTGATTCCACAGCATAAAACTGCTATGTCTAGCAAGCAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATTGGGCTGGTCT-----------------------------TTCCCCCTGA-------CA-----------TGCAGGTTTCTCT--------------AAAGGTTTTAAGAC----TGTGATCAAGGTGCCTTTTATTCTTGGTGCTCTTTCCTTTGATATGTAAGTTCCCTTATAAATTGATGGTATCAATTCCAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 42780 237 + 5963231 ------------------------ACTTCTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGCTATGTCCAGCAAGCAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATTGGGTTGGTCT-----------------------------TTCCCCCTGA-------CA-----------TGCAGGTTTCTCT--------------AAAGGTTTTAAGAC----TGTGATCAAGGTGCCTTTTATTCTTAGTGCTCTTTCCTTTGATATGTAAGTTCCCTTATAAATTGACGGTATCAACTCGAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5733151 236 + 108171978 ------------------------ACTTTTGATTTGCCTTATTAACATGTCCATCCTGACTCCATAGCATAAAGCTGCAATGTTCATAAAGTAGAAACAGGGGTTGGACAAAAACTAACAAGAACTTGGCCAGTCTGGCCC-----------------------------TTCTC------------AG-----------CTCAGTTTTTTCC--------------AAAAGTTGTAAGAGACTGTATGATCAAGGTGCCTTTTATTCTCAGTGGTTTTTCTTTTAATATTTAAGTTTCCTCATGAGTTGGTAGCATCAACTTCAG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5097696 250 - 6317780 ------------------------ACTTCTGATTTGCCTTATTAACATGTCCATCCTGACTCCACAGCATAAAACTACAATGTTCAGAAAGTGGAAACAGGGGTTGGACAAAAACTAACAAGAACTCGGCCAGTCTGGTCT-----------------------------TTCTC------------AG-----------CTCAGTTTTCTCCATGTGGGTTTCTCTAAAGGTTGTAAGAGACTGTAAAATCAAGGTGCCTTTTACTCTCAGTGGTCTTTCTTTTAATATTTAAGTTTCCTCATGAGTTGGTAGCATCAACTTCAG i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46111410 267 - 69331447 -------------------------CTTTTAATGTGCCTCATTAATATGTTGATTCTGAGTCTATGGCACAAAACTGCGAAGTCTAGAAACTGGAAACAAGGGTTGGAGGGAAAGGAATGAGAACTGGATCCGCTTGGGCTCTGTGGGCT--GTTTGCTCTGCTCATTACTTTACCCTGAACAGAACCA-----------TACTGGTTTCTTT--------------AAAGGTTTGAAGAGATTCTGTGATCAAGGAGCCTTTGATCCCCAGTGGACTTTGC-TTGGTATTTAAATTTTCTTA------AATGATATCAACTTCAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 83872 261 + 1056298 GCTTTTTCCCTGCTTTCTCTTGGTATTTTTAATTTGCCTTATTAA--TGTCACTTCTGACTATACTACATAAACCGCAAAAATCCAGCAACTGGAAATATGAGTCGGAGGGAAATTAATAAGAACTTGTTCAGTTTAGTCTCTATCAGTTCAGTT---------------TTCTCCATTC-------CTTACTGTCCCTCTGCAGG--TCTCT--------------AAAGGCTGTAAGAGACTGTGTAAACAAGATATGTTTTTTTCTCAGTGGTCTTTCCTTT-------------------------ATAGTATCAACAACAG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e otoGar3.GL873526 36311219 12 - 42659167 I e saiBol1.JH378157 8876820 0 - 16357246 C a score=331212.000000 s hg38.chr22_GL383582v2_alt 98926 29 + 162811 AAGTATAATAATCTTTTCTTtttattcat s panTro5.chr22 28878787 29 + 37823149 AAGTATAATAATCTTTTCTTtttattcat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153394 29 + 50109623 AAGTATAATAATCTTTTCTTtttattcat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3176128 29 + 4464012 AAGTATAATAATCTTTTCTTtttattcat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106672115 27 - 115148730 AAGTATAATGATCTTT--CTTTTATTCAT i nomLeu3.chr7b C 0 M 100 s rheMac8.chr10 84286481 29 + 92844088 AAGTATAATAATCTTTTCTTtttattcat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631519 29 - 96509753 AAGTATAATAATCTTTTCTTtttattcat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123336 29 - 13098629 AAGTATAATAATCTTTTCTTtttattcat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4090122 29 - 4483953 AAGTATAATAATCTTTTCTTtttattcat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720758 29 + 33263144 AAGTATAATAATCTTTTCTTtttattcat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001481 29 - 14338769 AAGTATAATAATCTTTTCTTtttattcat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939438 24 + 1946073 AAGTATAATAA-----TCTTtttattcat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966601 26 - 2117846 AAGTATAATAATCTT---TTtttattcat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8876820 25 - 16357246 AAGTATAATACT-TT---TTtttattcat i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1362852 26 - 1807191 AAGTATAATAATCTT---TTtttattcat i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43017 26 + 5963231 AAGTATAGTAATCTT---TTtttattcat i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5733387 28 + 108171978 -AGTATAATAATCTTTTCTTTTTATTGAT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5097946 28 - 6317780 -AGTATAATAATCTTTTCTTCTTATTGAC i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46111677 29 - 69331447 AAATACAAAGACTGTTCCTTTTTATTACT i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 84133 23 + 1056298 -----AAATAATCTTTCCTTCTTA-CCAT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e otoGar3.GL873526 36311219 12 - 42659167 I a score=1669826.000000 s hg38.chr22_GL383582v2_alt 98955 142 + 162811 tctacaaatttttattgcatgcctgtgtgc-------aggg---------gctgaaatggggagccaaaagttcacctagtgtctaccctccaggagctcacagaatgatctgggggtaaagcaaaatttaaac-------agtg-----atgtaaacagtacttcagag s panTro5.chr22 28878816 141 + 37823149 tctacaaatttttattgcatgcctgtgtgc-------aggg---------gctgaaatggggagccaaa-gttcacctagtgtctaccctccaggagctcacagaatgatctgggggtaaagcaaaatttaaac-------agtg-----atgtaaacagtacttcagag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153423 141 + 50109623 tctacaaatttttattgcatgcctgtgtgc-------aggg---------gctgaaatggggagccaaa-gttcacctagtgtctaccctccaggagctcacagaatgatctgggggtaaagcaaaatttaaac-------agtg-----atgtaaacagtacttcagag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3176157 141 + 4464012 tctacaaatttttattgcatgcctgtgtgc-------aagg---------gctgaaatggggagccaaa-gttcacctagtgcctaccctccaggagctcacagaatgatctgggagtaaagcaaaatttaaac-------agtg-----atgtaaacagtacttcagag i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84286510 141 + 92844088 tctacaaatttttattgcatgcctgtgtgc-------aggg---------gctgaaatggggagccaaa-gttcaccaagtgtctaccctccaggagctcacagaatgatgtgggggtaaagcaaaatttaaac-------agtg-----ctgtaaataatacttcagag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631548 141 - 96509753 tctacaaatttttattgcatgcctgtgtgc-------aggg---------gctgaaatggggagccaaa-gttcaccaagtgtctaccctccaggagctcacagaatgatgtgggggtaaagcaaaatttaaac-------agtg-----atgtaaataatacttcagag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123365 141 - 13098629 tctacaaatttttattgcatgcctgtgtgc-------aggg---------gctgaaatggggagccaaa-gttcaccaagtgtctaccctccaggagctcacagaatgatgtgggggtaaagcaaaatttaaac-------agtg-----atgtaaataatacttcagag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4090151 141 - 4483953 tctacaaatttttattgcatgcctgtgtgc-------aggg---------gctgaaatggggagccaaa-gttcaccaagtgtctaccctccaggagctcacagaatgatgtgggggtaaagcaaaatttaaac-------agtg-----atgtaaataatacttcagag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720787 141 + 33263144 tctacaaatttttattgcatgcctgtgtgc-------aggg---------gctgaaatgggaagccaaa-gttcaccaagtgtctaccctccaggagctcacagaatgatgtgggggtaaagcaaaatttaaac-------agtg-----atgtaaataatacttcagag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001510 141 - 14338769 tctacaaatttttattgcatgcctgtgtgc-------aggg---------gctgaaatggggagccaaa-gttcaccaagtgtctaccctccaggagctcacagaatgatgtgggggtaaagcaaaatttaaac-------agtg-----atgtaaataatacttcagag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939462 141 + 1946073 tctacaaatttttattgcatgcctgtgtgc-------aggg---------gctgaaatggggagccaaa-gttcaccaagtgtctaccctccaggagctcacagaatgatgtgggggtaaagcaaaatttaaac-------agtg-----atgtaaataatacttcagag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966627 141 - 2117846 tcaacaaatttttattgcatggctatgtgc-------agag---------gctgaaatggggagccaaa-gttcacctagtgtctaccctccaggagctcacagaatggtctgggggtaaagcaaaatttaaac-------agtg-----atgtaaatactacttcaggg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8876845 141 - 16357246 tcaacaaatttttattgcatggctgtctgc-------agag---------gctgaaatggggagccaaa-gttcacctagtgtctaccctccaggagctcacagaatgatctaggggtaaagcaaaatttaaac-------agtg-----atgtaaatactacttcaggg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1362878 141 - 1807191 tcaacaaatttttattgcgtggctgtgtgc-------agag---------gctgaaatggggagccaaa-gttcacctagtgtctaccctccaggagctcacagaatgatctgggggtaaagcaaaatttaaac-------agtg-----atgtaaatactacttcaggg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43043 141 + 5963231 tcaacaaatttttattgcatggctgtgtgc-------agag---------gctgaaatggggagccaaa-gttcacctagtgtctaccctccaggagctcacagaatgatctaggggtaaagcaaaatttaaac-------agtg-----atgtaaatactacttcaggg i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5733415 138 + 108171978 TCAACAAATTATTATCGCATGCCTATGTGT-------AG-G---------GCTGAAACGGGGAGTCAAA-GTTCACCTAGTATGTGCCCTCAGGGA--ACACAGAATGATATGGCAGTAAAGCAAAACCTAAAC-------TGTG-----GCGCAAACAGTACTTCAgag i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5097974 140 - 6317780 TCAACAAATTATTGTCGCATGCCTATGTGT-------AG-G---------GCTGAAACAGGGAGTcaaa-attcacctagtatctgccctcagggaacacacagaatgatgtggcagtaaagcaaaacccaagc-------tgtg-----atgtaaacagtacttcagag i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46111709 137 - 69331447 TCAACTCACTTTTATCCCATGCCTACGGGC-------AAGGCAAAGGGGCCCCAAACTGAGGATCCAAA-GTCCAGGTAGTGTCTGCCCTCAGGGAGCTTCCAGAACAGTCTGTGA-------------------------AGTGTTTCCATGTAAATAGGACTATAGAC i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 84156 133 + 1056298 TCAGCAAAATTTCATTATATGTGTACATGCCAGGAAAAGGT---------GCTGAAA--GGGAAGAAAA-GCTCACTTACTGTCTGC----------------------TCTAGGGGGAAAGCAAAACCAAAACTTTGAGGAGTG---CTATGAAGAAGGTACTTTAggg i dasNov3.JH570235 C 0 I 7443 e mm10.chr15 82832840 662 + 104043685 I e otoGar3.GL873526 36311219 12 - 42659167 I e nomLeu3.chr7b 106672142 100 - 115148730 M a score=156938.000000 s hg38.chr22_GL383582v2_alt 99097 21 + 162811 cgc--agacttaatgccaccaac s panTro5.chr22 28878957 21 + 37823149 cac--agacgtaatgccaccaac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153564 21 + 50109623 cac--agatgtaatgccaccaac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3176298 21 + 4464012 cac--agacgtaatgccaccaac i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84286651 23 + 92844088 catagagaggtaatgtcaccaac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631689 23 - 96509753 catagagaggtaatgtcaccaac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123506 23 - 13098629 catagagaggtaatgtcaccaac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4090292 23 - 4483953 catagagaggtaatgtcaggaac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720928 23 + 33263144 catagagaggtaatgtcaccaac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001651 23 - 14338769 catagagaggtaatgtcaccaac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939603 21 + 1946073 cat--agaggtaatgtcaccaac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966768 21 - 2117846 cat--ataggaaatgttgccaac i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8876986 21 - 16357246 cat--acaggaaatgtcgtcaac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1363019 21 - 1807191 cat--ataggaaatgtcgccaac i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43184 20 + 5963231 cat--ataggaaacatc-ccaac i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5733553 21 + 108171978 ctt--agaggtaacgtccccaac i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5098114 21 - 6317780 ctt--agaggtgatgtctccaac i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46111846 20 - 69331447 CTT--AGAGGTAGTGT-Gccaac i canFam3.chr10 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e dasNov3.JH570235 84289 7443 + 1056298 I e otoGar3.GL873526 36311219 12 - 42659167 I e nomLeu3.chr7b 106672142 100 - 115148730 M a score=146668.000000 s hg38.chr22_GL383582v2_alt 99118 12 + 162811 ctagttaaggaa s panTro5.chr22 28878978 12 + 37823149 ctagttaaggaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153585 12 + 50109623 ctagttaaggaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3176319 12 + 4464012 ctagttaaggag i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84286674 12 + 92844088 ctagttaaggag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631712 12 - 96509753 ctagttaaggag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123529 12 - 13098629 ctagttaaggag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4090315 12 - 4483953 ctagttaaggag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720951 12 + 33263144 ctagttaaggag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001674 12 - 14338769 ctagttaaggag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939624 12 + 1946073 ctagttaaggag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966789 12 - 2117846 ctagttaaggag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8877007 12 - 16357246 ctagttaaggag i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1363040 12 - 1807191 ctagttaaggag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43204 12 + 5963231 ctagttaaggag i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5733574 12 + 108171978 ctagttacagag i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5098135 12 - 6317780 ctagttacagag i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46111866 5 - 69331447 ctaag------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 91732 12 + 1056298 CTAATTAAGGAG i dasNov3.JH570235 I 7443 C 0 e mm10.chr15 82832840 662 + 104043685 I e otoGar3.GL873526 36311219 12 - 42659167 I e nomLeu3.chr7b 106672142 100 - 115148730 M a score=1164675.000000 s hg38.chr22_GL383582v2_alt 99130 97 + 162811 gtcaggaaagcattcttgagggagt-gtagcttgacctgagtcataaagagtgagtaagagctacctg-------------------------gggggaaggggaacaaactgctttgtggag s panTro5.chr22 28878990 97 + 37823149 gtcaggaaagcattcctgagggagt-gtagcttgacctgagtcataaagagtgagtaagagctacctg-------------------------gggggaaggggaacaaactgctttgtggag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153597 97 + 50109623 gtcaggaaagcattcctgagggagt-gtagcttgacctgagtcataaagagtgagtaagagctacctg-------------------------gggggaaggggagcaaactgctttgtggag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3176331 97 + 4464012 gtcaggaaagcattcttgagggagc-gtagcttgacctgagtcataaagagtgagtaagagctacctg-------------------------gggggaaggggaacaaactgctttgtggag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106672246 96 - 115148730 gtcaggaaagcattcttgagggagt-gtagcttga-ctgagtcataaagagggagtaagagctacctg-------------------------gggggaaggggaacaatctgctttgtggag i nomLeu3.chr7b M 100 C 0 s rheMac8.chr10 84286686 97 + 92844088 gtcaggaaagcattcttgacagagc-gtagc-tgacctgagtcatcaagagtgagtaagagctacctg------------------------caggggaaggggaacaaactgctttgtggag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631724 98 - 96509753 gtcaggaaagcattcttgacagagc-gtagcttgacctgagtcatcaagagtgagtaagagctacctg------------------------cgggggaaggggaacaaactgctttgtggag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123541 98 - 13098629 gtcaggaaagcattcttgacagagc-gtagcttgacctgagtcatcaagagtgagtaagagctacctg------------------------cgggggaaggggaacaaactgctttgtggag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4090327 98 - 4483953 gtcaggaaagcattcttgacagagc-atagcttgacctgagtcatcaagagtgagtaagagctacctg------------------------cgggggaaggggaacaaactgctttgtggag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24720963 98 + 33263144 gtcaggaaagcattcttgacagagt-gtagcttgacctgagtcatcaagagtgagtaagagctacctg------------------------ggggggaaggggaacaaactgctttgtggag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001686 98 - 14338769 gtcaggaaagcattcttgacagagc-gtagcttgacctgagtcatcaagagtgagtaagagctacctg------------------------cgggggaaggggaacaaactgctttgtggag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939636 98 + 1946073 gtcaggaaagcattcttgacagagt-gtagcttgacctgagtcgtcaacagtgagtaagagctacctg------------------------ggggggaaagggaacaaactgctttgtggaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966801 97 - 2117846 gtcagaaaggcattcttgagggagtcatttattgacctgagtcataaagaatgagtaagagctacctg--------------------------ggggaaggggaacaaagtgctatgtggag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8877019 96 - 16357246 gtcagaaaagcattcttgagggcgt-gtagcttgacccgagtcataaagaatgagtaagagctacctt--------------------------ggggaaggggaacaaagtgttgtgtggag i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1363052 96 - 1807191 gtcagaaaagcattcttgagggagt-gtagcttgacctgagtcataaagaatgagtaagagctacctg--------------------------ggggaaggggaacaaagtgctgtatggag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43216 96 + 5963231 atcagaaaaacattcttgagggaat-gtagcttgacctgagtcataaataatgagtaagagctaccgg--------------------------ggggaaggggaacaaagtgctgtgtggag i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5733586 97 + 108171978 gtcaggaaagcattcttgagggagt-gttgcttgtaccaagttgtgaagaatgagtaagagctaccca-------------------------ggggaagggggaaCAAACTGCCTTGTGGAG i micMur3.chr7 C 0 I 1275 s proCoq1.NW_012136747v1 5098147 97 - 6317780 gtcaggaaagcattcttgagggagt-gttgctcgcagcaggttgtgaagaatgactaagagctaccca-------------------------agggaagggggaacaaactgccttgtggag i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46111871 115 - 69331447 gttaggaatgcattcttgaggcagt-gttgcttaagc--agttgcaaag---gagtaggagccatctgggcaaagggggcaggggagtcttccagagcagagggaacaaacagccctgtag-- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 91744 91 + 1056298 GTCAGGACAG--TTCCTTGAGAAGT-ATGTCTGAACT--ACCCATACAAAAATGGGAAGGGAATCCTG---------------------------GGCAGAGGGAACAGACTTCCATGTATGG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e otoGar3.GL873526 36311219 12 - 42659167 I a score=1359535.000000 s hg38.chr22_GL383582v2_alt 99227 117 + 162811 ggacaagcaggc-agggtgtagggaaccaacacagtg---gagcacaactc--------------------------tgagagggtgggaagctgatatgcaggaacccagggccaacaatg---------------gctgttgctgggttagggatgatat s panTro5.chr22 28879087 117 + 37823149 ggacaagcaggc-agggtgtagggaaccaacacagtg---gagcacaactc--------------------------tgagggggtgggaagctgatatgcaggaacccagggccaacaatg---------------gctgttgctgggttagggatgatat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153694 117 + 50109623 ggacaagcaggc-agggtgtagggaaccaacacagtg---gagcacaactc--------------------------tgagggggtgggaagctgatatgcaggaacccagggccaacaatg---------------gctgttgctgggttagggatgatat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3176428 117 + 4464012 ggacaagcaggc-agggtgtagggaaccaacacagtg---gagcacaactc--------------------------tgagggggtgggaagctgatatgcaggaacccagggccaacaatg---------------gctgTTGCTGGGTTAGGGATGATAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106672342 117 - 115148730 ggacaagcaGGC-AGGGTGCAGGGAACTGACACGGTG---GAGCACAACTC--------------------------TGAAGGGGTGGGAAGCTGACATGCAGGAACCAAGGGCCAACAATG---------------GCTGTTGCTGGGTTAGGGATGATAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84286783 117 + 92844088 ggagaagcaGGC-AGGGTGTAGGGAACTGACACAGTG---GAGCACAACTC--------------------------TGAGGGGGTGGGCAGCTGATGTGCAGGAACCCGGGGCCAACAATG---------------GCCGTTGCTGGGTTAGAGATGATAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631822 117 - 96509753 ggagaagcaGGC-AGGGTGTAGGGAACTGACACAGTG---GAGCACAACTC--------------------------TGAGGGGGTGGGCAGCTGATGTGCAGGAACCCGGGGCCAACAATG---------------GCCGTTGCTGGGTTAGAGATGATAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123639 117 - 13098629 ggagaagcaGGC-AGGGTGTAGGGAACTGACACAGTG---GAGCACAACTC--------------------------TGAGGGGGTGGGCAGCTGATGTGCAGGAACCCGGGGCCAACAATG---------------GCCGTTGCTGGGTTAGAGATGATAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4090425 117 - 4483953 ggagaagcaGGC-AGGGTGTAGGGAACTGACACAGTG---GAGCACAACTC--------------------------TGAGGGGGTGGGCAGCTGATGTGCAGGAACCCGGGGCCAACAATG---------------GCCGTTGCTGGGTTAGAGATGATAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24721061 117 + 33263144 ggagaagcaGGC-AGGGTGTAGGGAACTGACACAGTG---GAGCACAACTC--------------------------TGAGGGGGTGGGCAGCTGATGTGCAGGAACCCGGGGCCAACAATG---------------GCCGTTGCTGGGTTAGGGATGATAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001784 117 - 14338769 ggagaagcaGGC-AGGGTGTAGGGAACTGACACAGTG---GAGCACAACTC--------------------------TGAGGGGGTGGGCAGCTGATGTGCAGGAACCCGGGGCCAACAATG---------------GCCATTGCTGGGTTAGAGATGATAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939734 117 + 1946073 ggagaagcaGGC-AGGGTGTAGGGAACTGACACAGCG---GAGCACAACTC--------------------------TGAGGGGGTGGGCAGCTGATGTGCAGGAACCCAGGGCCAACAATG---------------GCCATTGCTGGGTTAGGGATGATAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1966898 117 - 2117846 ggacaagcaGGC-AGGGTGTAGGGAACTGATACAGTG---GAGCCAAAATC--------------------------TGAGGGGGTGGGAGGCTAATGTGCAGGAAACTAGGGTCAACAATG---------------GCTGTTGCTGGGTTAGGGATGATAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8877115 117 - 16357246 ggacaagcaGGC-AGGGTGTAGGGAACTGATACAGTG---GAGCCAAAATC--------------------------TGAGGGGGTAGGAGGCTAATGTGCAGGAAACTAGGGCCAACAATG---------------GCTGTTGCTGGGTTAGGGATGACAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1363148 117 - 1807191 ggataagcaGGC-AGGGTGTAGGGAACTGATACAGCG---GAGCCAAAATC--------------------------TGAGGGGGTAGGAGGCTAATGTGCAGGAAACTAGGGCTAACAATG---------------GCTGTTGCTGGGTTAGGGATGATAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43312 117 + 5963231 ggacaagcaggc-agggtgtagggaactgataaagtg---gagccaaaatc--------------------------tgagggggtgggaggctaacgtgcaggaaactagggccaacaatg---------------gctgttgctgggttagGGATGATAT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5098244 114 - 6317780 ggataagcacgt-gGGGTGCAGGAAACTGATA--ATG---GAGCAGGATTC--------------------------TGAATAGGTGGGGAGCCCATGTGCAGGAACCTGGGGCCAACAAAG---------------GCTGTTGCTGGGTTAGGGATGATG- i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46111986 120 - 69331447 gaacaagcACTCTTGGGTGTGGAGGGCACATGTGGTACACCAGCACGATTC--------------------------TGAAGGAGCAGGGTGCGGCTGAGCAGGAGTGTGGAACCAACAAT----------------GTCACTGCCAGCTTAGGGATGTCAT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 91835 136 + 1056298 -----------------------GGACTGATACAGTA---GAGCATGATTtgggggtgggggtgggggtgggggtgaggAGGAGGCAGAGAGCTGATGCAGGAGGACATGAGGCCAACAATGGCCAAGCCAACAATAGCTGTTGCTAGGTGAGGGATAATGG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e otoGar3.GL873526 36311219 12 - 42659167 I e micMur3.chr7 5733683 1275 + 108171978 I a score=523687.000000 s hg38.chr22_GL383582v2_alt 99344 42 + 162811 --ggaagagtttgggtactggtg-gt----ggaaatgcatacaagaggc s panTro5.chr22 28879204 42 + 37823149 --ggaagagtttgggtactggtg-gt----ggaaatgcatacaagaggc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153811 42 + 50109623 --ggaagagtttgggtactggtg-gt----ggaaatgcatacaagaggc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3176545 42 + 4464012 --GGAAGAGTTTGGGTACTGGTG-GT----GGAAATGCATACAAGAAGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106672459 42 - 115148730 --GGAAGAGTTTGGGTACTGGTG-GT----GGAAATGTATACAAGAGGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84286900 42 + 92844088 --AGAAGAGTTTGGGTACTGGTG-GT----GGAAATGCATACAAGAAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631939 42 - 96509753 --AGAAGAGTTTGGGTACTGGTG-GT----GGAAATGCATACAAGAGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123756 42 - 13098629 --AGAAGAGTTTGGGTACTGGTG-GT----GGAAATGCATACAAGAGGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4090542 42 - 4483953 --AGAAGAGTTTGGGTACTGGTG-GT----GGAAATGCATACAAGAGGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24721178 42 + 33263144 --AGAAGAGTTTGGGTACTGGTG-GT----GGAAACGCATACAAGAGAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001901 42 - 14338769 --AGAAGAGTTTGGGTACTGGTG-GT----GGAAATGCATACAAGAGGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939851 42 + 1946073 --AGAAGAGTTTAGGTACTGGTG-GT----GGAAATGCATACAAGAGGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1967015 42 - 2117846 --GGAAGTGTTTGGGTACTGGTG-GT----GGAAATGCATGTAAGAGGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8877232 42 - 16357246 --GGAAGTGTTTGGGTACTGGTG-GT----GGAAATGCATGTAAGAGGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1363265 42 - 1807191 --GGAAGTGTTTGGGTACTGGTG-GT----AGAAACGCATGTAAGAGGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43429 42 + 5963231 --GGAAGTGTTTGGGTACTGGTG-GT----GGAAATGCACGTAAGAGGC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5098358 39 - 6317780 --GGAAGAGTTTAGGTATTGGTG--------GAAATACATACAAGAGGC i proCoq1.NW_012136747v1 C 0 I 345 s otoGar3.GL873526 36311231 39 - 42659167 --GGAAGAGTTTGGGCATTCAGG--------GAAATGCATATAAgagtc i otoGar3.GL873526 I 12 C 0 s canFam3.chr10 46112106 40 - 69331447 -----GAAGTTTGTGTAAAAGGGTGT----GGAAATGCATACAAGAAGA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 91971 48 + 1056298 GGGAAAGGATGTGGGAAGGAATA-GCTTTGGAAAGTGTACAGAAGAGGC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e micMur3.chr7 5733683 1275 + 108171978 I a score=1116359.000000 s hg38.chr22_GL383582v2_alt 99386 110 + 162811 ----agca----tag--acttcgaaggtaaaaccgacaggacttgatgctgacacatggcca-gggggtct-gtgagaTGTGTTGCAGTGAGCCTGAGTGTGTGGCAGTGTAA-------------------ATCA---GCACA s panTro5.chr22 28879246 110 + 37823149 ----agca----tag--actttgaaggtaaaaccgacaggacttgatgctgacagatggcca-gggggtct-gtgagaTGTGTTGCAGTGAGCCTGAGTGTGTGGCAGTGTAA-------------------ATCG---GCACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153853 110 + 50109623 ----agca----tag--actttgaaggtaaaaccgacaggacttgatgctgacagatggcca-gggggtct-gtgagaTGTGTTGCAGTGAGCCTGAGTGTGTGGCAGTGTAA-------------------ATCG---GCACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3176587 110 + 4464012 ----AGCA----TAG--ACTTTGAAGGTAAAACCGACAGGACTTGATGCTGACAGATGGCCA-GGGGGTCT-GTGAGATGTGTTGCAGTGAGCCTGAGTGTGTGGCAGTGTAA-------------------ATCG---GCACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106672501 111 - 115148730 ----GGCA----TAG--ACTTTGAAGGTAAAACTGACAGGACTTGATGCTGACAGATGGCCAGGGGGGTCT-GTGAGATGTGTTGCAGTGAGCCCGCGTGTGTGGCAGTGTAA-------------------ATCG---GCACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84286942 111 + 92844088 ----TGCA----TAGACACTCTGGAGGTAAAACTGACAGGACTTGATGCTGACAGATGGCCA--GGGGTCT-GTGAGATGTGTTGCAGTGAGCCCGCGTGTGTGGCAGTGTAA-------------------ATCG---GCACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87631981 111 - 96509753 ----TGCA----TAGACACTCTGGAGGTAAAACTGACAGGACTTGATGCTGACAGATGGCCA--GGGGTCT-GTGAGATGTGTTGCAGTGAGCCCGCGTGTGTGGCAGTGTAA-------------------ATCG---GCACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123798 111 - 13098629 ----TGCA----TAGACACTCTGGAGGTAAAACTGACAGGACTTGATGCTGACAGATGGCCA--GGGGTCT-GTGAGATGTGTTGCAGTGAGCCCGCATGTGTGGCAGTGTAA-------------------ATCG---GCACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4090584 109 - 4483953 ----TGCA----TAGACACTC--GAGGTAAAACTGACAGGACTTGATGCTGACAGATGGCCA--GGGGTCT-GTGAGATGTGTTGCAGTGAGCCCGCGTGTGTGGCAGTGTAA-------------------ATCG---GCACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24721220 111 + 33263144 ----TGCA----TAGACACTCTGGAGGTAAAACTGACAGGACTTGATGCTGACAGATGGCCA--GGGGTCT-GTGAGATGTGTTGCAGTGAGCCCACGTGTGTGGCAGTGTAA-------------------ATCG---GCACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14001943 111 - 14338769 ----TGCA----TAGACACTCTGGAGGTAAAACTGACAGGACTTGATGCTGACAGATGGCCA--GGGGTCT-GTGAGATGTGTTGCAGTGAGCCCGCGTGTGTGGCAGTGTAA-------------------ATCG---GCACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 939893 111 + 1946073 ----TGCA----TAGACACTCTGGAGGTAAAACCGATAGGACTTGATGCTGACAGATGGCCA--GGGGCCT-GTGAGACATGTTGCAGTGAGCCCGCGTGTATGGCAGTGTAA-------------------ATCG---GCACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1967057 114 - 2117846 ----TGCATT--TAGACAATTTGGGGGTAAAACCAACAGGACTTGATGCTGACATATGGCCA-GGGGGTCT-GTGAGACGTGCTGCAGTGATCTTGCCTGTGTGGCACTGTAT-------------------GTCA---GCACA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8877274 114 - 16357246 ----TGCATT--TAGACAATTTGGGGGTAAAACCGACAGGACTTGATGCTGACATATGGGCA-GGGGGTCG-GTGAGATGTGCTGCAGTGATCTCGCCTGTGAGGCACCGTAG-------------------GTCA---GCACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1363307 114 - 1807191 ----TGCATT--TAGACAATTTGGGGGTAAAACTGACAGGACTTGATGCTGACATATGGCCA-GGGGGTCT-GTGAGATGTGCTGCAGTGATCTCGCCTGTGTGGCACGGTAC-------------------GTCA---GCACA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43471 114 + 5963231 ----TGCATT--TAGACAATTTGGGGGTAAAACTGACAGGACTTGATGCTGACATACGGCCA-GGGGGTCT-GTGAGATGTGCTGCAGTGATCTCGCCTGTGTGGCACGGTAC-------------------GTCA---GCACA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36311270 110 - 42659167 ----tgtatt--tagacattttggagataaaaccgataggacttga---taacaaatggcta-tggggtct-gtaagaTATGCTGCAGTGAA-TCAAGTGTCTGGTGGTGTAA-------------------AGGG---GCACA i otoGar3.GL873526 C 0 I 133 s canFam3.chr10 46112146 135 - 69331447 ----TGCATTCAGAGATACTTTAGACATAAACCAAGGAGGGTTTGGTGATGAGCTACAGACA-CGGCGGCT-ATGAGACCTGTCTCGGTGAGGCTTGGTGTGTGGTGCTGTAAGTGGTGGTGCCCTCACTGGGTGG---GCAAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 92019 98 + 1056298 TGGCTCTA----GAGACACTCTGGAGAGAAAACTGACAGTACTTAATGAC------TGCCCA-CTGGGTATGGTGAGA------GCAG----------TGTCTGGCGGTGAGA-------------------GTGGTGTACCCA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e proCoq1.NW_012136747v1 5098397 345 - 6317780 I e micMur3.chr7 5733683 1275 + 108171978 I a score=369150.000000 s hg38.chr22_GL383582v2_alt 99496 32 + 162811 GTGGACAG---GGAGCCCTCTGGATGCCAGC--ACAG s panTro5.chr22 28879356 32 + 37823149 GTGGACAG---GGAGCCCTCTGGATGCCAGC--ACAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153963 32 + 50109623 GTGGACAG---GGAGCCCTCTGGATGCCAGC--ACAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3176697 32 + 4464012 GTGGACAG---GGAGCCCTCTGGATGGCAGC--ACAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106672612 32 - 115148730 GTGAACAG---GGAGCCCTCTGGCTGCCAGC--ACAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84287053 32 + 92844088 GTGGACAG---GGAGCCCTCTGGATGCCAGC--ACAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87632092 32 - 96509753 GTGGACAG---GGAGCCCTCTGGATGCCAGC--ACAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123909 32 - 13098629 GTGGACAG---GGAGCCCTCTGGATGCCAGC--ACAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4090693 32 - 4483953 GTGGACAG---GGAGCCCTCTGGATGCCAGC--ACAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24721331 32 + 33263144 GTGGACAG---GGAGCCCTCTGGATGCCAGC--ACAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14002054 32 - 14338769 GTGGACAG---GGAGCCCTCTGGATGCCAGC--ACAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 940004 32 + 1946073 GTAGACAG---GGAGCCCTCTGGATGCCAGC--ACAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1967171 32 - 2117846 GTGGATAG---GGAACCCTCTACATGCCAGC--ACAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8877388 32 - 16357246 GTGGATAG---GGAACCCTCTGGATGCCAGC--ACAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1363421 32 - 1807191 GTGGATAG---GGAACCCTCTGGATGCCAGC--ACAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43585 32 + 5963231 GTGGATAG---GGAACCCTCTGGATGCCAGC--ACAA i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46112281 34 - 69331447 GTGGAAGC---GAGGCCCTTTGGGCATCAGTGGACAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 92117 35 + 1056298 GAGGAAGGGGCGGAGTCCCCCAGGCATCAGC--GTAG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e otoGar3.GL873526 36311380 133 - 42659167 I e proCoq1.NW_012136747v1 5098397 345 - 6317780 I e micMur3.chr7 5733683 1275 + 108171978 I a score=583836.000000 s hg38.chr22_GL383582v2_alt 99528 47 + 162811 CAGGATTCTGATGAGGTGAGCACACACGTGGCACCTGCTCT-AAATGC s panTro5.chr22 28879388 47 + 37823149 CAGGATTCTGATGAGGTGAGCACACACGTGGCACCTGCTCT-AAATGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41153995 47 + 50109623 CAGGATTCTGATGAGGTGAGCACACACGTGGCACCTGCTCT-AAATGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3176729 47 + 4464012 CAGGATTCTGATGAGGTGAGCACACACGTGGCACCTGCTCT-AAATGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106672644 47 - 115148730 CAGGATTCTGATGAGGTGAGCACACACGTGGCACCTGCTCT-AAATGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84287085 47 + 92844088 CAGGATTCTGATGAGGTGAGCACACACATGGCACCTGCTCT-AAATGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87632124 47 - 96509753 CAGGATTCTGATGAGGTGAGCACACACATGGCACCTGCTCT-AAATGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123941 47 - 13098629 CAGGATTCTGATGAGGTGAGCACACACATGGCACCTGCTCT-AAATGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4090725 47 - 4483953 CAGGATTCTGATGAGGTGAGCACACACATGGCACCTGCTCT-AAATGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24721363 47 + 33263144 CAGGATTCTGATGAGGTGAGCACACACATGGCACCTGCTCT-AAATGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14002086 47 - 14338769 CAGGATTCTGATGAGGTGAGCACACACATGGCACCTGCTCT-AAATGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 940036 47 + 1946073 CAGGATTCTGATGAGGTGAGCACACACATGGCACCTGCTCT-AAATGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1967203 47 - 2117846 TAGGATTCTGATGAGGTGAGCACACATGTAGTACCAGCTCT-AAATTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8877420 47 - 16357246 CAGGATTCTGATGAGGTGAGCACACACGTGGTACTAGCTCT-AAATTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1363453 47 - 1807191 CAGGATTCTGATGAGGTGAGCACACACGTGGTACCAGCTCT-AAATTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43617 47 + 5963231 CAGGATTCTGATGAGGTGAGCACACACGCGGTACCAGTTCT-AAACTC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5098742 46 - 6317780 CAGGATTCTGATGAGGTAAGCACAC--GTGTCACCTGCTCTAAAATGC i proCoq1.NW_012136747v1 I 345 C 0 s canFam3.chr10 46112315 30 - 69331447 CAAAATTCTGATGAATAGAGC-----------------TCC-AAAAGC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 92152 47 + 1056298 TAATAGTTGGATGAGATGAGGACACACATGGCACCCATTCT-AAACAC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e otoGar3.GL873526 36311380 133 - 42659167 I e micMur3.chr7 5733683 1275 + 108171978 I a score=1349743.000000 s hg38.chr22_GL383582v2_alt 99575 110 + 162811 TACTTTCTCCTAGAAAG---ATTCCATTTACAGAAGAGAATG-TTTTGGACTGAGAGCAAAATCTCAAC-----TGG-----TCAGGAATGGGTTTAATTCCAAATGACATTTTAT-GGGT-AACT s panTro5.chr22 28879435 110 + 37823149 TACTTTCTCCTAGAAAG---ATTCCATTTACAGAAGAGAATG-TTTTGGACTGAGAGCAAAATCTCAAC-----TGG-----TCAGGAATGGGTTTAATTCCAAATGATATTTTAT-GGGT-AACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41154042 110 + 50109623 TACTTTCTCCTAGAAAG---ATTCCATTTACAGAAGAGAATG-TTTTGGACTGAGAGCAAAATCTCAAC-----TGG-----TCAGGAATGGGTTTAATTCCAAATGATATTTTAT-GGGT-AACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3176776 107 + 4464012 TACTTTCTCCTAGAAAG---ATTCCATTTACAGAAGAGAATG-TTTTGGACTGAGAGCAAAATCTCAAC-----TGG-----TCAGGAATGGGTTTAA---CAAATGATATTTTAT-GGGT-AACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106672691 110 - 115148730 TACTTTCTCCTAGAAAG---ATTCCATTTACAGAAGAGAATG-TTTTGGACTGAGAGCAAAATCTCAAC-----TGG-----TCAGGAATGGGTTTAATTCCAAATGGTATTTTAT-GGTT-AACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84287132 110 + 92844088 TACTTTCTCCTAGAAAG---ATTCCATTTACAGAAGAGAATG-TTTTGGACTAAGAGCAAAATCTCAAC-----TGG-----TCAGGAATGGATTTAATTCCAAATGATATTTTAT-GGGT-AACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87632171 110 - 96509753 TACTTTCTCCTAGAAAG---ATTCCATTTACAGAAGAGAATG-TTTTGGACTAAGAGCAAAATCTCAAC-----TGG-----TCAGGAATGGGTTTAATTCCAAATGATATTTTAT-GGGT-AACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7123988 110 - 13098629 TACTTTCTCCTAGAAAG---ATTCCATTTACAGAAGAGAATG-TTTTGGACTAAGAGCAAAATCTCAAC-----TGG-----TCAGGAATGGGTTTAATTCCAAATGATATTTTAT-GGGT-AACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4090772 110 - 4483953 TACTTTCTCCTAGAAAG---ATTCCATTTACAGAAGAGAATG-TTTTGCACTAAGAGCAAAATCTCAAC-----TGG-----TCAGGAATGGGTTTAATTCCAAATGATGTTTTAT-GGGT-AACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24721410 110 + 33263144 TACTTTCTCCTAGAAAG---ATTCCATTTACAGAAGAGAATG-TTTTGGACTAAGAGCAAAATCTCAAC-----TGG-----TCAGGAATGGGTTTAATTCCAAATGATATTTTAT-GGGT-AACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14002133 110 - 14338769 TACTTTCTCCTAGAAAG---ATTCCATTTACAGAAGAGAATG-TTTTGGACTAAGAGCAAAATCTCAAC-----TGG-----TCAGGAATGGGTTTAATTCCAAATGATATTTTAT-GGGT-AACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 940083 110 + 1946073 TACTTTCTCCTAGAAAG---ATTCCATTTACAGAAGAGAAAG-TTTTGGACTAAGAGCAAAATCTCAGC-----TGG-----TCAGGAATGGGTTTAATTCCAAATGATATTTTAT-GGGT-AACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1967250 109 - 2117846 CACTTTCTCTTAGAAAG---ATTCCATGTACAGTACAGAATG--TTTGGACTTAGAGTAAAATCTCAAC-----TGG-----TTAGGAATGGGTTTAATTCCAAATGACATTTTCT-GGGT-AACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8877467 110 - 16357246 CACTTTCTCTTAGAAAG---ATTCCATTTACAGAAGAGAATG--TTTGGACTAAAAGTAAAATCTCAAC-----TAG-----TTAGTAACGGGTTTAATTCCAAATGACATTTTCT-GGGTAAACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1363500 109 - 1807191 CACTTTCTCTTAGAAAG---ATTCCATTTACAGAAGAGAATG--TTTGGTCTGAGAGTAAAATCTCAAC-----TGG-----TTAGGAATGGGTTTAATTCCAAATGACATTTTCT-GGGT-AACT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43664 107 + 5963231 CACTTTCTCTTAGAAAG---ATTCCATTTACAGAAGAGAATG--TTTGGACT--GAGTAAAATCTCAAC-----TGG-----TTAGGAATGGGTTTAATTCCAAATGACATTTTCT-GGTT-AACT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5098788 115 - 6317780 AACTTTCCCTTAGGAAC---ATTTTATTGACAGATTAGAATG-TTTTGGACTTACAGCAAAATCTGAACTAGCGTGG-----TCAGCAGTAAGTTTAATTTCAAATGACATTTTCT-GGGT-AACT i proCoq1.NW_012136747v1 C 0 I 74 s otoGar3.GL873526 36311513 69 - 42659167 TGGTTTATCTTACAAGG---GT-------ACAAGT--GAATC-TTT----CTAAGAGTAGAATATAAAC-----------------------ATTTGAACACAA----------------T-AACT i otoGar3.GL873526 I 133 C 0 s canFam3.chr10 46112345 119 - 69331447 TATTTACTCTTTTAAAGCACATTCTATTTACAGAATACAATG-TTTCAGACCTAGAGCAAAATCTCAAC-----TGGAATGACCAGGAATGGGTTTAATCTCAAATGACATTTTCTGGGGT-AGCT i canFam3.chr10 C 0 I 9 s dasNov3.JH570235 92199 117 + 1056298 TAACTGCTCTTAGAAAC---ATGCCATTTACAGAATGCAATGTTTTTGGATTTAGAGTAAAACTTCAAA-----TGGAATGATAAGGAATAGGTTTATTTTTAAATGGCATTTTTTTGGGT-AGCT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e micMur3.chr7 5733683 1275 + 108171978 I a score=686484.000000 s hg38.chr22_GL383582v2_alt 99685 70 + 162811 ---------ACGAGAAACC-TTTTATAGAACAC---AGG---CTATCTT--CCTGCTTTAGTAAATAGCTCAGGGTTTTGAG-TAAACT s panTro5.chr22 28879545 70 + 37823149 ---------ACGAGAAACC-TTTTATAGAACAC---AGG---CTATCTT--CCTGCTTTAGTAAATAGCTCAGGGTTTTGAG-TAAACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41154152 70 + 50109623 ---------ACGAGAAATC-TTTTATAGAACAC---AGG---CTATCTT--CCTGCTTTAGTAAATAGCTCAGGGTTTTGAG-TAAACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3176883 70 + 4464012 ---------ACGAGAAACC-TTTTATAGAACAC---AGG---CTATCTT--CCTGCTTTAGTAAATAGCTCAGGGTTTTGAG-TAAACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106672801 70 - 115148730 ---------ACGAGAAACC-TTTTATAGAACAC---AGG---CTATCTT--CCTGCTTTAGTAAATAGCTCAGGATTTTAAG-TAAACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84287242 70 + 92844088 ---------ACGAGAAACC-TTTTATAGAACAC---AGG---CTATCTT--TCTGCTTTAGTAAATAGCTCAGGATTTTGAG-TAAACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87632281 70 - 96509753 ---------ACGAGAAACC-TTTTATAGAACAC---AGG---CTATCTT--TCTGCTTTAGTAAATAGCTCAGGATTTTGAG-TAAACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7124098 70 - 13098629 ---------ACGAGAAACC-TTTTATAGAACAC---AGG---CTATCTT--TCTGCTTTAGTAAATAGCTCAGGATTTTGAG-TAAACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4090882 70 - 4483953 ---------ACGAGAAACC-TTTTATAGAACAC---AGG---CTATCTT--TCTGCTTTAGTAAATAGCTCAGGATTTTGAG-TAAACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24721520 70 + 33263144 ---------ACGAGAAACC-TTTTATAGAACAT---AGG---CTATCTT--CCTGCTTTAGTGAATAGCTCAGGATTTTGAG-TAAACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14002243 70 - 14338769 ---------ACGAGAAACC-TTTTATAGAACAC---AGG---CTATCTT--TCTGCTTTAGTAAATAGCTCAGGATTTTGAG-TAAACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 940193 70 + 1946073 ---------ACGAGAAACC-TTTTATAGAACAC---AGG---CTATCTT--CCTGCTTTAGTAAATAGCTCAGGATTTTGAG-TAAACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1967359 69 - 2117846 ---------ATTAGAAATCTTTTTACAGAACAC---AGG---CTATCTT--CCGGCTTTAATAAACAGCTCAGGATTTCGAG-TAAA-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8877577 69 - 16357246 ---------ACTAGAAATCTTTTTACAGAACAC---AGG---CTATCTT--CTGGCTTTAATAAACAGCTCAGGATTTTGAG-TAAA-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1363609 69 - 1807191 ---------ACTAGAAATCTTTTTACAGAACAC---AGG---CTATCTT--CTGGCTTTAATAAACAGCTCAGGATTTTGAG-TAAA-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43771 69 + 5963231 ---------ACTAGAAATCTTTTTACAGAACAC---AGG---CTATCTT--CCGGCTTTAATAAACAGCTCAGGATTTTGAG-TAAA-- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36311582 64 - 42659167 -----------AAGAAAAT-------GACATGA---AGG---CTATGTTAACCAGTTTGATGGAAGTGTTTCAGATTATGTG-TGAAAA i otoGar3.GL873526 C 0 I 5 s canFam3.chr10 46112473 51 - 69331447 ---------GCTAGAAACT-CTTTCTGGAACTCATTAGT---CTACACT------------------------GTTTTGAAT-TAAACT i canFam3.chr10 I 9 C 0 s dasNov3.JH570235 92316 80 + 1056298 AAAGGTAAAGCTGGAAACC-CTTTCTGGAACAC---AAAAATCTACCTT--CTTGCCTTAATAA---GGTCAGTATTTTGAACTAAACT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e proCoq1.NW_012136747v1 5098903 74 - 6317780 I e micMur3.chr7 5733683 1275 + 108171978 I a score=752702.000000 s hg38.chr22_GL383582v2_alt 99755 66 + 162811 GATTGTTTTCC---GTTGTCTTAG-------AGTTATGATTCTGT---------ATTAAGAGT--ATTCTTG------------------------------TAAGA-------------------------------------------------CACGAGGAAG s panTro5.chr22 28879615 66 + 37823149 GATTGTTTTCC---ATTGTCTTAG-------AGTTATGATTCTGT---------ATTAAGAGT--ATTCTTG------------------------------TAAGA-------------------------------------------------CACGAGGAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41154222 66 + 50109623 GATTGTTTTCC---GTTGTCTTAG-------AGTTATGATTCTGT---------ATTAAGAGT--ATTCTTG------------------------------TAAGA-------------------------------------------------CACGAGGAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3176953 66 + 4464012 GATTGTTTCCC---ATTGCCTTAG-------AGTTATGATTCTGT---------ATTAAGAGT--ATTCGTG------------------------------TAAGA-------------------------------------------------CACGAGGAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106672871 66 - 115148730 GATTGTTTTCC---ATTGCCTTAG-------AGTTATGATTCTGT---------ATTAAGAGT--ATTCTTG------------------------------TAAGA-------------------------------------------------CACGAGGAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84287312 66 + 92844088 GATTGTTTTCC---ATTGCCTTAG-------AGTTATGATTCTGT---------ATTAAGAAT--ATTCTTA------------------------------TAAGA-------------------------------------------------CATGAGGAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87632351 66 - 96509753 GATTGTTTTCC---ATTGCCTTAG-------AGTTATGATTCTGT---------ATTAAGAAT--ATTCTTA------------------------------TAAGA-------------------------------------------------CATGAGGAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7124168 66 - 13098629 GATTGTTTTCC---ATTGCCTTAG-------AGTTATGATTCTGT---------ATTAAGAAT--ATTCTTA------------------------------TAAGA-------------------------------------------------CATGAGGAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4090952 66 - 4483953 GATTGTTTTCC---ATTGCCTTAG-------AGTTATGATTCTGT---------ATTAAGAAT--ATTCTTA------------------------------TAAGA-------------------------------------------------CATGAGGAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24721590 66 + 33263144 GATTGTTTTCC---ATTGCCTTAG-------AGTTATGATTCTGT---------ATTAAGAAT--ATTCTTA------------------------------TAAGA-------------------------------------------------CATGAGGAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14002313 66 - 14338769 GATTGTTTTCC---ATTGCCTTAG-------AGTTATGATTCTGT---------ATTAAGAAT--ATTCTTA------------------------------TAAGA-------------------------------------------------CATGAGGAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 940263 66 + 1946073 GATTGTTTTCC---ATTGCCTTAG-------AGTTATGATTTTGT---------ATTAAGAAT--ATTCTTA------------------------------TAAGA-------------------------------------------------CATGAGGAAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1967428 65 - 2117846 -ACTGTTTTCC---ACTGCCTTAG-------AGTTATGATTCTGT---------ATTAAGAAT--ATTCTTG------------------------------TAAGA-------------------------------------------------CACGAGGAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8877646 65 - 16357246 -ACTGTTTTCC---ATTGCCTTAG-------AGTTATGATTCTGT---------ATTAAGAAT--ATTCTTG------------------------------TAAGA-------------------------------------------------CACGAGGAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1363678 65 - 1807191 -ACTGTTTTCC---ATTGCCTTAG-------AGTTGTGATTCTGT---------ATTAAGAAT--ATTCTTG------------------------------TAAGA-------------------------------------------------CACGAGGAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43840 65 + 5963231 -AGTGTTTTCC---ATTGCCTTAG-------AGTTACGATTCTGT---------ATTAAAAAT--ATTCTTG------------------------------TAAGA-------------------------------------------------CACAAGGAAG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5098977 63 - 6317780 GATTATTTCCC---ATTGCCTTAG-------AGTTG--ATTCTAT---------ACTAAGAGT--ATCCTTG------------------------------TAAGA-------------------------------------------------CACTA-GAAG i proCoq1.NW_012136747v1 I 74 C 0 s otoGar3.GL873526 36311651 85 - 42659167 CACTGTATGCCAGAAGTGCATTAATGTACATAGTTAACATTCAATAAAAAAGAAAAAAAGAAT--ATTCTCA------------------------------TAAGA-------------------------------------------------CAATAGGAAG i otoGar3.GL873526 I 5 C 0 s canFam3.chr10 46112524 146 - 69331447 AATTATTCTCT---ATTGCTGCAG-------AGTGATGATTCCAT--------TATTAAGAAT--ATTCTTAGGTAAAGACTAGGCTTTTTTTTtttttttttaagattttatttcagagaatgggagagaacatgcatgagtgaggggggtgcagcaagagggag i canFam3.chr10 C 0 I 121 s dasNov3.JH570235 92396 44 + 1056298 ----------------------------------GATGATTCTAT---------ATCAAGAGTTAGCCCCTT------------------------------TAAGA-------------------------------------------------TCCTAGGTAG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e micMur3.chr7 5733683 1275 + 108171978 I a score=2418546.000000 s hg38.chr22_GL383582v2_alt 99821 210 + 162811 AGACTAGGCTTTATCAAAGtgatcccaggacatagcctaaaacttgctttttaaaataaatccctgctagcaagcttttt---ttccgtatcatt---ttacttctcctaaagtagagGACA-ACAAC---------GACAAA---TCTAGTCAAAGAAACTGTTCCAGTTAGTTTAACTGACAATTCCTCTGTGTACCTTCCTTA----------TATTCAG----ATATTCCTTATCAGAA s panTro5.chr22 28879681 210 + 37823149 AGACTAGGCTTTATCAAAGTGATCCCAGGACATAGCCTAAAACTTGCTTTTTAAAATAAATCCCTGCTAGCAAGCTTTTT---TTCCGTATCATT---TTACTTCTCCTAAAGTAGAGGACA-ACAAC---------GACAAA---TCTAGTCAAAGAAACTGTTCCAGTTAGTTTAACTGACAATTCCTCTGTGTGCCTTCCTTA----------TATTCAG----ATATTCCTTATCAGAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41154288 210 + 50109623 AGACTAGGCTTTATCAAAGTGATCCCAGGACATAGCCTAAAACTTGCTTTTTAAAATAAATCCCTGCTAGCAAGCTTTTT---TTCCGTATCATT---TTACTTCTCCTAAAGTAGAGGACA-ACAAC---------GACAAA---TCTAGTCAAAGAAACTGTTCCAGTTAGTTTAACTGACAATTCCTCTGTGTGCCTTCCTTA----------TATTCAG----ATATTCCTTATCAGAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3177019 213 + 4464012 AGACTAGGCTTTATCAAAGTGATCCCAGGACATAGCCTAAAACTTGCTTTTTAAAATAAATCCCTGCTAGCAAGCTTTTT---TTCCGTATTATT---TTACTTCTCCTAAAGTAGAGGACA-ACAAC------AATGACAAA---TCTAGTCAAAGAAACTGTTCCAGTTAGTTTAACTGACAATTCCTCTATGTGCCTTCCTTA----------TATTCAG----ATATTCCTTATCAGAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106672937 218 - 115148730 AGACTAGGCTTTATCAAAAtgatcccaggacatagcctaaaacttgctttttaaaataaatccctgctagcaagcttttt---ctccgtatcatt---ttacttctcctaaagtagagGaca-acaacaacaacaacaacaaA---TTCAGTCAAAGAAACTGTT-CAGTCAGTTTAACTGACAGTTCCTCTATGTGCCTTCCTTA----------TATTCAG----ATATTCCTTATCAGAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84287378 208 + 92844088 AGACTAGGCTTTATCAAAGTGATCCCAGGACAGAGACTAAAACTTGCTTTTTAAAATACATCCCTGCTAGCAAGC-TTTT---CTCCGTATCACT---TTACTTCTCCTAAAGTAGAGGACA-ACAAC---------AACAAA---TCCAGTCAAAGAAAGTGGTCCAGTTAGTTTAACTGACAATTCCTCTATGTGCCTTCCTTA-----------ATTCAG----ATATTCCTTATCAGAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87632417 208 - 96509753 AGACTAGGCTTTATCAAAGTGATCCCAGGACAGAGACTAAAACTTGCTTTTTAAAATAAATCCCTGCTAGCAAGC-TTTT---CTCCATATCACT---TTACTTCTCCTAAAGTAGAGGACA-ACAAC---------AACAAA---TCCAGTCAAAGAAAGTGGTCCAGTTAGTTTAACTGACAATTCCTCTATGTGCCTTCCTTA-----------ATTCAG----ATATTCCTTATCAGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7124234 208 - 13098629 AGACTAGGCTTTATCAAAGTGATCCCAGGACAGAGACTAAAACTTGCTTTTTAAAATAAATCCCTGCTAGCAAGC-TTTT---CTCCATATCACT---TTACTTCTCCTAAAGTAGAGGACA-ACAAC---------AACAAA---TCCAGTCAAAGAAAGTGGTCCAGTTAGTTTAACTGACAATTCCTCTATGTGCCTTCCTTA-----------ATTCAG----ATATTCCTTATCAGAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091018 205 - 4483953 AGACTAGGCTTTATCAAAGTGATCCCAGGACAGAGACTAAAACTTGCTTTTTAAAATAAATCCCTGCTAGCAAGC-TTTT---CTCCATATCATT---TTACTTCTCCTAAAGTAGAGG----ACAAC---------AACAAA---TCCAGTCAAAGAAAGTGGTCCAGTTAGTTTAACTGACAATTCCTCTATGTGCCTTCCTTA-----------ATTCAG----ATATTCCTTATCAGAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24721656 205 + 33263144 AGACTAGGCTTTATCAAAGTGATCCCAGGAAAGAGACTAAAACTTGCTTTTTAAAATAAATCCCTGCTAGCAAGC-TTTT---CTCCATATCACT---TTACTTCTCCTAAAGTAGAGGACA-ACA------------ACAAA---TCCAGTCAAAGAAACTGGTCCAGTTAGTTTAACTGACAATTCCTCTATGTGCCTTCCTTA-----------ATTCAG----ATATTCCTTATCAGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14002379 208 - 14338769 AGACTAGGCTTTATCAAAGTGATCCCAGGACAGAGACTAAAACTTGCTTTTTAAAATAAATCCCTGCTAGCAAGC-TTTT---CTCCATATCATT---TTACTTCTCCTAAAGTAGAGGACA-ACAAC---------CACAAA---TCCAGTCAAAGAAAGTGGTCCAGTTAGTTTAACTGACAATTCCTCTATGTGCCTTCCTTA-----------ATTCAG----ATATTCCTTATCAGAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 940329 208 + 1946073 AGACTAGGCTTCATCAAAGTGATCCCAGGACAGAGACTAAAACTTGCTTTTTAAAATAAATCCCTGCTAGCAAGC-TTTT---CTCCATATCACT---TTATTTCTCCTAAAGTAGAGGACA-GCAAC---------AACAAA---TCCAGTCAAAGAAACTGGTACAGTTAGTTTAACTGACAATTCCTCTATGTGCCTTCCTTA-----------ATTCAG----ATATTCCTTATCAGAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1967493 209 - 2117846 TGACTAGACTTTATCAAAGTGACTCCAGAACATAGCCTAAAACTTGCTTTTCAATAAAAATCCCTGCTAGCAAGC-TTTT---TTCCGTATCATT---TTACTTCTC---AAGTAGAGG----ACAAC---------AACAAA---TC----CAAAGAACCTGTTCCAGTTAGTATAACTGACAATTTCTCTATGTGCCTTCCTTGTATTCAGATGTATTCAG----ATTCGCCTTAACAGAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8877711 210 - 16357246 TGACAAGACTCTTTCAAAGTGACTCTGGGACATAGCCTAAAACTTGCTTTTCAATATAAACCCCTGCTAGCAAGCTTTTT---TTCTGTATCATT---TTACTTTTC---AAGTAGAGG----ACAAC---------AACAAA---TC----CAAAGAACCTGTTCCAATTAGTTTAACTGACAATTTCTCTATGTGCCTTCCTTATATTCAGATCTATTCAG----ATATGCCTTAACAGAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1363743 212 - 1807191 TGACTAGACTTTAACAAAGTGACTCCAGGACATAGCCTAAAACTTGCTTTTCAATATAAATCCCTGCTAGCAAGC-TTTT---ATCCGTATCATT---TTACTTCTC---AAGTAGAGGACA-ACAAC---------AACAAA---TC----CAAAGAACCTGTTCCAATTAATTTAACAGACAATTTCTCTATGTGCTTTCCTTATATTCAGATGTATTCAG----ATATGCCTTATCAGAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 43905 212 + 5963231 TGACTAGACTTTATCAAAGTGACTCCAGGACATAGCCTAAAACTTGCTTTTCAATATAAATCCCTGCTAGCAAGC-TTTT---TTCCGTATCATT---TTACTTCTC---AAGTAGAGGACA-ACAAC---------AACAAA---TC----CAAAGAACCTGTTCCAATTAGTTTAACTGACAATTTCTCTATGTGCCTTTCTTATATTCAGATGTATTCAG----ATATGCCTTATCAGAA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5099040 192 - 6317780 AGACTAGGCTTTATCAAAGTGACTCTAGGATACAACCTAGAACTTGCT-TTTACAATGAATCTCTGCTAGCAAGC-TTTT---CTCCATATCATT---TTGTTTCTCCTACAGCAGAGGGCAGAAAAA---------GAAAAA---TCCAGTCAAAGAAG-------ATTTAGTTTAACTGACATTTACTGTATGTGCCTTCCTTA----------TATTCAG----AGGGGT---------- i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36311736 198 - 42659167 AGGCTAGACTTTACCAAAGTGACTACAGGATACAACCTAGAACTTGCTCTTTACAATAAATCTCTGCTAGCAAGC-TTTT--CCCCCATATCA-T---TTGTTTTGCTTAAAGCAGAGGGCAGAAAAA---------GAAAAA--CTCCAGTCAAAGAAGG-ATTTCACTTAGTTTAACTGACATTCACTGTCTATGCCTTCCTTG----------TATTTGG----GGGT------------ i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46112791 200 - 69331447 AGACTAGGCTTTATCAAAGTGACCCCAAGACACAACTTAAAATCTGGTTCTGAAAATAAATCTCTGCTAGCAAGC-TTTT---CTCCTTATCATTTTCTTGTTTATTCTAAAATGGAGGGGA-GAAAA---------AAGAAA---TCCAGTT-AAGGACCCGTTCCAGTTAGT-TAGCTGGCATCTCCTCTATTTGTCTTCCTTG----------TATTCAG--------------TGGGGA i canFam3.chr10 I 121 C 0 s dasNov3.JH570235 92440 203 + 1056298 ACAAAGGACTTTATCAAAGTGATCGCAGGATACACTCCAGAACTTGCTTTTTAAAATAAATCTCTGCCGGCAAAC-TTTTATTTTCTCTATGATTTCCTTATTTCTCCTACAGTGGAGGACA-GTTA----------AGTAAATGTTCCAGTTAAATAAG-TGTTCCAGTTAGT-----TGACATTTACTGTAT-TGCCTTCCTTA----------GATTCAGTGGGATATT----------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e micMur3.chr7 5733683 1275 + 108171978 I a score=1580875.000000 s hg38.chr22_GL383582v2_alt 100031 123 + 162811 ATCTTTTTTGATTTTT------ACCTC--AAATTTAGGCAGTCTAAaa----aca----aa------gacaagaaataaggaaa---a--gagagaaagCTGGGGCGG-AGAGGAAGTTCTCGGAGTTTTTCAC-TGGA-GCGGAGCTGTCCA s panTro5.chr22 28879891 123 + 37823149 ATCTTTTTTGATTTTT------ACCTC--AAATTTAGGCAGTCTAAaa----aca----aa------gacaagaaataaggaaa---a--gagagaaagCTGGGGCGG-AGAGGAAGTTCTCGGAGTTTTTCAC-TGGA-GCGGAGCTGTCCG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41154498 123 + 50109623 ATCTTTTTTGATTTTT------ACCTC--AAATTTAGGCAGTCTAAaa----aca----aa------gacaagaaataaggaaa---a--gacagaaagCTGGGGCGG-AGAGGAAGTTCTCGGAGTTTTTCAC-TGGA-GCGGAGCTGTCCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3177232 123 + 4464012 ATCTTTTTTGATTTTT------ACCTC--AAATTTAGGCAGTCTAAaa----aca----aa------gacaagaaataaggaga---a--gagagaaagCTGGGGCAG-AGAGGAAGTTCTCGGAGTTTTTCAC-TGGA-GCGGAGCTGTCCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673155 123 - 115148730 ATCTTTTTTGATTTTT------ACCTC--AAATTTAGGCAGTCTAAAA----ACA----AA------GACATGAAATAAGGAAA---A--GAGAGAAAGCTGGGGCGG-AGAGGAAGCTCTCGGAGTTTTTCAC-TGGA-GCGGAGCTGTCCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84287586 123 + 92844088 ATCTTTCTTGATTTTT------AGCTC--AAATTTAGGCAGTCTAAAA----ACA----AA------GACATGAAATAAGGAAA---A--GAGAGAAAGCTGGGGTGG-AGAGGAAGTTCTCGGAGTTTTTTGC-TGGA-ACGGAGCTGTCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87632625 123 - 96509753 ATCTTTCTTGATTTTT------AGCTC--AAATTTAGGCAGTCTAAAA----ACA----AA------GACATGAAATAAGGAAA---A--GAGAGAAAGCTGGGGTGG-AGAGGAAGTTCTCGGAGTTTTTTGC-TGGA-ACGGAGCTGTCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7124442 123 - 13098629 ATCTTTCTTGATTTTT------AGCTC--AAATTTAGGCAGTCTAAAA----ACA----AA------GACATGAAATAAGGAAA---A--GAGAGAAAGCTGGGGTGG-AGAGGAAGTTCTCGGAGTTTTTTGC-TGGA-ACGGAGCTGTCCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091223 123 - 4483953 ATCTTTCTTGATTTTT------AGCTC--AAATTTAGGCAGTCTAAAA----ACA----AA------GACATGAAATAAGGAAA---A--GAGAGAAAGCTGGGGTGG-AGAGGAAGTTCTCGGAGTTTTTCGC-TGGA-ACGGAGCTGTCCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24721861 123 + 33263144 ATCTTTCTTGATTTTC------AGCTC--AAATTTAGGCAGTCTAAAA----ACA----AA------GACACGAAGTAAGGAAA---A--GAGAGAAAGCTGGGGTGG-AGAGGAAGTTCTCGGAGTTTTTCGC-TGGA-ACGGAGCTGTCCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14002587 123 - 14338769 ATCTTTCTTGATTTTT------AGCTC--AAATTTAGGCAGTCTAAAA----ACA----AA------GACATGAAATAAGGAAA---A--GAGAGAAAGCTGGGGTGG-AGAGGAAGTTCTCGGAGTTTTTCGC-TGGA-ACGGAGCTGTCCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 940537 123 + 1946073 ATCTTTCTTGATTTTT------ACCTC--AAATTTAGACAGTCTAAAA----ACA----AA------GACATGGAATAAGGAAA---A--GAGAGAAAGCTGGGGTGG-AGAGGAAGTTCTCGGAGTTTTTCAC-TGGA-ACAGAGCTGTCCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1967702 114 - 2117846 ATCT---TTGGTTTTTT-----ACCTC--AAATTTAGGCAGTC---------AAA----AA------GGCATGAAATAAAAAAA-------AGAGAAAGCTCGAGCGG-AGAGGAAGTTGTCAGAGATTTTCAC-TGGA-GTGGAGCTGTCCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8877921 116 - 16357246 ATCTTTCTTGGTTTTTT-----ACCTC--AAATTTAGGCAGTCTAAAA----ACA----AA------GGCATGAAATTAAAAAA---------AGAAAGCTTGAGTGG-AGAGGTAGTTGTCAGAGTTTTTCAT-TGGA-GTGGAGCTG---- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1363955 125 - 1807191 ATCTTTCTTTTTTTTTTTTTTAATCTC--AAATTTAGGCAGTCTAAAA----ACA----AA------GGCATGAAATAAAAAAG---------AGAAAGCTTGAGCGG-AGAGGAAGTTGTTGGAGTTTTTCAC-TGGA-GTGGAGCTGTCCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 44117 127 + 5963231 ATCTTTCTTGGTTTTTT-----ACCTC--AAATTTAGGCAGTCTaaaa----aca----aa------ggcatgaaataaaaaaagaga--aagagaaagCTCGAGCGG-AGAGGAAGTTGTCGGAGTTTTTCAC-TGGA-GTGGAGCTGTCCA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5734958 133 + 108171978 ATCTTTCTTGGTTTCT------ACCTCAAAAATATAGGCAGTCTAAAA----ACA----GACAAGACAATATGAAATAAGAAAA---ACAGAGAGAAAGCTGAGGTAG-AAAGGAAGTTCTTGGAGTTCTTCAC-TGGA-GCACAGCTGTCCA i micMur3.chr7 I 1275 I 864 s proCoq1.NW_012136747v1 5099232 132 - 6317780 ATCTTTCTTGGTTTCT------ATCTCAAAAATATAGGCAGTCTAAAA----ACA----GACAAG--GATATGAAATGAGAAAA---ACAGAGAGAAAGCTGAGGTAACAAAGGAAGTTCTCGGAGTTCTTCAC-TGGA-GCAGAGCTGTCCA i proCoq1.NW_012136747v1 C 0 I 329 s otoGar3.GL873526 36311934 130 - 42659167 ATTTTTCTTGGCTTCT------ATCTCAAAAATACAGGCAGTCT-AAA----ACA----GACAAA--GACACAAAGTGAGGAAA---ATGTAGAGAAAGCTGAGGAGG-AAAGGAAGTTCTGGGAATTCTTCAG-AGGA-GCAGAGGTGTCCA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46112991 113 - 69331447 ---ATCGTTGGTTCCT------GCCTC--AAATACTGGCAGTCTAAAA----AGACATGAA------GACATGACATAAGAAAA---A---------------TGGGG-AGAACAGATCCTCAGAGTTCTTCACGTGGAGGTGGAGGTGGCAC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 92643 127 + 1056298 -TTTTTCTTAGTTACC------AACTC-AAAATATAGGCAGTCTAAAAACGGACA----AA------AATATGAAATGAGATAA---ATGGAAAGAAAGCTGGAGTGG---AGGAGGTTCTAGGAATGCTTCCC-TTGA-ACTGAGCTGTCCA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I a score=1873020.000000 s hg38.chr22_GL383582v2_alt 100154 187 + 162811 CTGAAGCTGCT---GATCTGGAATAGCAGCAGGGCT--------------AAAAGAAACTTATAc-ttggccctgtctctcactgg--tacaggagcct--a--ggcaagttaa-----tttaagtctcgattttctcaacaatacattggggataataC-CCAGTTGGGAAAAAAGGGCACGGTGGGGGTATCTTCTGCTACTTAAAGACAC--TGAT s panTro5.chr22 28880014 187 + 37823149 CTGAAGCTGCT---GATCTGGAATAGCAGCAGGGCT--------------AAAAGAAACTTATAc-ttggccctgtctctcactgg--tacaggagcct--a--ggcaagttaa-----tttaagtctcgattttctcaacagtacattggggataataC-CCAGTTGGGAAAAAAGGGCACGGTGGGGGTATCTTCTGCTATTTAAAGACAT--TGAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41154621 187 + 50109623 CTGAAGCTGCT---GATCTGGAATAGCAGCAGGGCT--------------AAAAGAAACTTATAc-ttggccctgtctctcactgg--tacaggagcct--a--ggcaagttaa-----tttaagtctcgattttctcaacagtacattggggataataC-CCAGTTGGGAAAAAAGGGCACGGTGGGGGTATCTTCTGCTATTTAAAGACAT--TGAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3177355 187 + 4464012 CTGAAGCTGCT---GATCTGGAATAGCAGCAGGGCT--------------AAAAGAAACTTATAc-ttggccctgtctctcattgg--tacaggagcct--a--ggcaagttaa-----tttaagtctcgattttctcaacagtacattggggataataC-CCAGTTGGGAAAAAAGGGCATGGTGGGGGTATCTTCTGCTATTTAAAGACAC--TGAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673278 185 - 115148730 CTGAAGCTGCT---GATCTGGAATAGCAGCAGGGCT--------------AAAAGAAAC--ATAc-ttggccctgtctctcactgg--tacaggagcct--a--ggcaagttaa-----tttaagtctcgattttctcaacagtacactggggataataC-CCAGTTGGGAAAAAAGGGCACGGTAGGGGTATCTTCTGCTATTTAAAGACAT--TGAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84287709 188 + 92844088 CTGAAGCTACT---GATCTGGAAGAGCAGCAGGGCT--------------AAAAGAAACTAATACTTtggccctatctctcactgg--tacaggagcct--a--ggcaagttaa-----tttaagtctcaatttcctcaacagtacattggggataataC-CTAGTTGGGAAAAAAGGACCGGGTAGGGGTATCTTCTGCTATTTAAAGACAT--TGAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87632748 188 - 96509753 CTGAAGCTACT---GATCTGGAAGAGCAGCAGGGCT--------------AAAAGAAACTAATACTTtggccctatctctcactgg--tacaggagcct--a--ggcaagttaa-----tttaagtctcaatttcctcaacagtacattggggataataC-CTAGTTGGGAAAAAAGGACCGGGTAGGGGTATCTTCTGCTATTTAAAGACAT--TGAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7124565 188 - 13098629 CTGAAGCTACT---GATCTGGAAGAGCAGCAGGGCT--------------AAAAGAAACTAATACTTtggccctatctctcactgg--tacaggagcct--a--ggcaagttaa-----tttaagtctcaatttcctcaacagtacattggggataataC-CTAGTTGGGAAAAAAGGACCGGGTAGGGGTATCTTCTGCTATTTAAAGACAT--TGAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091346 188 - 4483953 CTGAAGCTACT---GATCTGGAAGAGCAGCAGGGCT--------------AAAAGAAACTAATACTTtggccctatctctcactgg--tacaggagcct--a--ggcaagttaa-----tttaagtctcgatttcctcaacagtacattggggataataC-CTAGTTGGGAAAAAAGGACCGGGTAGGGGTATCTTCTGCTATTTAAAGACAT--TGAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24721984 188 + 33263144 CTGAAGCTACT---GATCTGGAAGAGCAGCAGGGCT--------------AAAAGAAACTAATACTTtggccctgtctctcactgg--tacaggagcct--a--ggcaagttaa-----tttaagtctcgatttcctcaacagtacattggggataataC-CCAGTTGGGAAAAAAGGACCGGGTAGGGGTATCTTCTGCTATTTAAAGACAT--TGAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14002710 188 - 14338769 CTGAAGCTACT---GATCTGGAAGAGCAGCAGGGCT--------------AAAAGAAACTAATACTTtggccctatctctcactgg--tacaggagcct--a--ggcaagttaa-----tttaagcctcgatttcctcaacagtacattggggataataC-CTAGTTGGGAAAAAAGGACCGGGTAGGGGTATCTTCTGCTATTTGAAGACAT--TGAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 940660 194 + 1946073 CTGAAGCCACT---GATCTGGAAGAGCAGCAGGGCTA--------AAAAAAAAAAAAACTAATattttggccctgtctctcactgg--tacaggagcct--a--ggcaagttaa-----tttaagtctcgatttcctcaacagtacattggggataataC-CCAGTTGGGAAAAAAGGACAGGGTAGGGGTATCTTCTGCTATTTAAAGACAT--TGAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1967816 182 - 2117846 CTGAAGCTGTT---GATTTG----AGCAGCAGGGCT--------------AAAAGAAACTAATAc-ttgaccctgtctctcactgg--tacaggagctt--g--ggcaagttaatttcttttaagttttgattttattaacagtacattggagataat-----agtTGGGAAAAAGGGGCAAAGTGGGGGTA--TTTTGTTATTTAAGGACAT--TGAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878037 177 - 16357246 -------TGTT---GATCTG----AGCAGGAGGGCT--------------AAAAGAAACTAATAc-ttgatcctgtctctcactgg--tacaggagctt--g--ggcaagttaatttcttttaagtttcgattttctcaacagtacattggagataac-----agtTGGGGAAAATGGGCAGAGTGGGGGTATCTTCTGTTATTTAAGGACAT--TGAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1364080 184 - 1807191 CTGAAGCTGCT---GATCCG----AGCAGCAGGGCT--------------AAAAGAAACTAATAc-ttgaccctgtctctcactgg--tacaggagctt--g--ggcaagttaatttcttttaagtttcgattttctcaacagtacatcggagacaat-----agtTGGGAAAAAGGGGTGGAGTGGGAGTATCTTCTGTTATTTAAGGAAAT--TGAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 44244 178 + 5963231 CTGAAGCTGTT---GATCTG----AGCAGCAGGGCT--------------AAAAGAACCTAATAc-ttgaccctgtctctcactgg--tacaggagctt--g--ggcaagttaa-----tttaagttt-gattttctcaacagtacattggagataat-----agtTGGGAAAAAGGGGTGGAGTGGGGGTATCTTCTGTTATTTAAGGACAT--TGAT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36312064 197 - 42659167 TGGAAGCCGCCGTGGAGGCGTAACAGCAGCAGAGTGGT-------CCAGGGAGAAAGAGAAAGAT-CTGGTCCCAACTCTCAGGGGCTTACAGGAGCCTGCA--AGTGAGTTTC-----TTTAAATTTTGGTTTTCTCAGAAGTACAAGGGGGATAATAC-CCAGCTGGGGGAAAGGGG------GAGGGGATCTTTTGTTATTTAAGGATATACAGAT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46113104 174 - 69331447 -------CTCT---GTAGGGGGAGCGCCACAGG-----------------ACAGGTGACTGaccc--tcgccctgcctctcaccagc-cagatgggctt--g--gcccagataa-ttcatttaagcctcgattttctcaa-agtaaattggggataaACCGTCCCCTGGGAAAAGAGGAAGGGGGTGGAGAATCTTC-------TAAGAAAAC--TGAC i canFam3.chr10 C 0 I 91 s dasNov3.JH570235 92770 200 + 1056298 TCAAGGCTGCTGTGGAGGTGGAA-TGCAGCAGAATCTCTCTCCAAGAGAGAAAAAGAATTAATAG-Atgactctgccactcattagc-tacgtaaactt--attgcttggatcc-----tttaaacctcaattttcccaacagtaaaatgggtctaataC-CCAGCTGGGAAAAAAAGG------GGAACAATTTTATGTTGTACAAGAAAAC--TGAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e proCoq1.NW_012136747v1 5099364 329 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=244744.000000 s hg38.chr22_GL383582v2_alt 100341 21 + 162811 --CAGGGCAAAATA---ACCTGAACA s panTro5.chr22 28880201 21 + 37823149 --CAGGGCAAAATA---ACCTGAACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41154808 21 + 50109623 --CAGGGCAAAATA---ACCTGAACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3177542 21 + 4464012 --CAGGGCAAAATA---ACCTGAACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673463 21 - 115148730 --CAGGGCAAAAGA---ACCTGAATA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84287897 21 + 92844088 --CAGGGCAAAAGA---ACCTGAACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87632936 21 - 96509753 --CAGGGCAAAAGA---ACCTGAACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7124753 21 - 13098629 --CAGGGCAAAAGA---ACCTGAACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091534 21 - 4483953 --CAGGGCAAAAGA---ACCTGAACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722172 21 + 33263144 --CAGGGCAAAAGA---ACCTGAACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14002898 21 - 14338769 --CAGGGCAAAAGA---ACCTGAACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 940854 21 + 1946073 --CAGGGCAAAAGA---ACCTGAACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1967998 21 - 2117846 --CAGGGCAAAAGA---ACCTGAACA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878214 21 - 16357246 --CAGTACAAAAGA---ACCTGAATA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1364264 21 - 1807191 --CAGGGAAAAAAA---ACCTGAACA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 44422 21 + 5963231 --CAGGGCAAAAGA---ACCTGAACA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36312261 21 - 42659167 --GAGGGCAAAAAA---ACCTGAATG i otoGar3.GL873526 C 0 I 88 s dasNov3.JH570235 92970 26 + 1056298 AACAGAAAAAAACACCCACCaaaaca i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e canFam3.chr10 46113278 91 - 69331447 I e proCoq1.NW_012136747v1 5099364 329 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=83557.000000 s hg38.chr22_GL383582v2_alt 100362 8 + 162811 Gggccaag s panTro5.chr22 28880222 8 + 37823149 Gggccagg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41154829 8 + 50109623 Gggccagg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3177563 8 + 4464012 Gggccagg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673484 8 - 115148730 Gggccagg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84287918 8 + 92844088 GGGCCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87632957 8 - 96509753 GGGCCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7124774 8 - 13098629 GGGCCAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091555 8 - 4483953 GGGCCAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722193 8 + 33263144 GGGCCAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14002919 8 - 14338769 GGGCCAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 940875 8 + 1946073 GGACCTGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968019 8 - 2117846 Gggacagg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878235 8 - 16357246 Gggccagg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1364285 8 - 1807191 Gggccagg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 44443 8 + 5963231 Gggccagg i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 92996 8 + 1056298 aaaacaaa i dasNov3.JH570235 C 0 I 574 e mm10.chr15 82832840 662 + 104043685 I e canFam3.chr10 46113278 91 - 69331447 I e otoGar3.GL873526 36312282 88 - 42659167 I e proCoq1.NW_012136747v1 5099364 329 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=2782105.000000 s hg38.chr22_GL383582v2_alt 100370 276 + 162811 --taaggtggcccatgtctgttatcccagcactttgggaggttgaggtgggaggactgcctgaggccaggagttcaagattagcctgggcaacaaagaaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggcactc-cctgtagtcccagctattcaggaggctgaggcaggaggactgctcaagcccatgaggtcaaggctgcagc-----------------------------------------------------------------------------------------caactatgatcacaccactgcattccagcctggatgacagggcaagaccttgactG s panTro5.chr22 28880230 276 + 37823149 --taaggtggcccatgtctgttatcccagcactttgggaggttgaggtgggaggactgcctgaggccaggagttcaagattagcctgggcaacaaagaaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggcactc-cctgtagtcccagctattcaggaggctgaggcaggaggactgctcaagcccatgaggtcaaggctgcagc-----------------------------------------------------------------------------------------caactatgatcacaccactgcattccagcctggatgacagggcaagaccttgactG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41154837 276 + 50109623 --taaggtggcccatgtctgttatcccagcactttgggaggttgaggtgggaggactgcctgaggccaggagttcaagattagcctgggcaacaaagaaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggcactc-cctgtagtcccagctattcaggaggctgaggcaggaggactgctcaagcccatgaggtcaaggctgcagc-----------------------------------------------------------------------------------------caactatgatcacaccactgcattccagcctggatgacagggcaagaccttgactG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3177571 365 + 4464012 --taaggtggcccatgtctgttatcccagcactttgggaggttgaggtgggaggactgcctgaggccaggagttcaagattagcctgggcaacaaagaaaggccctgtctctacaaaaaataaaataaaatttgctgggtgtgttggcactc-cctgtagtcccagctattcaggaggctgaggcaggaggactgctcaagcccatgaagtcaaggctgcagccaactatgatcacaccactgcattccagcctggatgacagggcaagaccttgACTGacacacacacacacacacacacacacacacacacaActatgatcacaccactgcattccagcctggatgacagggcaagaccttgactG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673492 277 - 115148730 --taaggtggcccatgtctgttatcccagcactttgggaggttggggtgggaggactgcctgaggccaggagttcaagattagcctgggcaacaaagagaggccccgtctctataaaaaataaaattaaatttgctgggtgtgttggcgctcgcctgtagtcccagctattcaggaggctgaggcaagaggactgctcaagcccatgaggtcaaggcttcagc-----------------------------------------------------------------------------------------caactatgatcacaccactgcattccagcctggatgacagggcaagaccttgACTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84287926 279 + 92844088 TCTAAggtggcccatgtctgttatcccagcactttgggaggttgaggcgggaggattgcctgaggccaggagttcaagatcagcctgggcaacaaagcaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggtgctcgcctgtagtcccagctattcaggaggttgaggcaggaggattgctcaagcccatgaggtcaaggctgcagc-----------------------------------------------------------------------------------------caactatgatcacaccactgcattccagcctggatgacagggtaagaccttgACTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87632965 279 - 96509753 TCTAAggtggcccatgtctgttatcccagcactttgggaggttgaggtgggaggattgcctgaggccaggagttcaagattagcctgggcaacaaagcaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggtgctcgcctgtagtcccagctattcaggaggttgaggcaggaggattgctcaagcccatgaggtcaaggctgcagc-----------------------------------------------------------------------------------------caactatgatcacaccactgcattccagcctggatgacagggcaagaccttgACTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7124782 279 - 13098629 TCTAAggtggcccatgtctgttatcccagcactttgggaggttgaggtgggaggattgcctgaggccaggagttcaagattagcctgggcaacaaagcaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggtgctcgcctgtagtcccagctattcaggaggttgaggcaggaggattgctcaagcccatgaggtcaaggctgcagc-----------------------------------------------------------------------------------------caactatgatcacaccactgcattccagcctggatgacagggcaagaccttgACTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091563 279 - 4483953 TCTAAggtggtccatgtctgttatcccagcactttgggaggttgaggtgggaggattgcctgaggccaggagttcaagattagcctgggcaacaaagcaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggtgctcgcctgtagtcccagctattcaggaggttgaggcaggaggattgctcaagcccatgaggtcaaggctgcagc-----------------------------------------------------------------------------------------caactatgatcacaccactgcattccagcctggatgacagggcaagaccttgactG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722201 279 + 33263144 TCTAAggtggcccatgtctgttatcccagcactttgggaggttgaggtgggaggattgcctgaggccaggagttcaagattagcctgggcaacaaagcaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggtgctcgcctgtagtcccagctattcagcaggctgaggcaggaggattgctcaagcccatgaggtcaaggctgcagc-----------------------------------------------------------------------------------------caactatgatcacaccactgcattccagcctggatgacagggcaagaccttgactG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14002927 279 - 14338769 TCTAAggtggcccacgtctgttatcccagcactttgggaggttgaggtgggaggattgcctgaggccaggagttcaagattagcctgggcaacaaagcaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggtgctcgcctgtagtcccagctattcaggaggttgaggcaggaggattgctcaagcccatgaggtcaaggctgcagc-----------------------------------------------------------------------------------------caactatgatcacaccactgcattccagcctggatgacagggcaagaccttgactG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 940883 274 + 1946073 TCTAAggtggcccatgtctgttatcccagcactttgtgaggttgaggtgggaggattgcctgaggcctggaattcaagattagcctgggcaacaaagcaaggccctgtctctacaaaaaata-----aaatttgctgggtgtgttggtgctcgcctgtagtcccagctattcaggaggctgaggcaggaggattgctcaggcccatgaggtcaaggctgcagc-----------------------------------------------------------------------------------------caactatgatcacaccactgcattctagcctggatgacagcgcaagaccttgATTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968027 277 - 2117846 --cgaggtagtccatacctgttatgccagcactttggaacgctgaggtaggaggatggcctgaggccaggagttcaagactagcctgggcaacaaagggaggccctgtctctacaaaaagtaaaattaaatttgctgggtgtcttgacacttgcctctagtcccagctattcaggaggctgaggtaggaggattgttcaagcccatgaggtcaaggctgcagc-----------------------------------------------------------------------------------------caactatgatcataccactgtattccagcctggatgacagggcaagactttgACTG i calJac3.chrUn_GL286373 C 0 I 188 s saiBol1.JH378157 8878243 277 - 16357246 --tgaggtggcccaagcctgttatgccagcacttcggaaggctgaggtaggaggatggtctgaggccaggagctcaagactagcctgggcaacaaagggaggccctgtctctacaaaaagtaaaattaaatttgctgggtgtcttgatgcttgcctccagtcccagctatttaggaggctgaggtaggaggattgttcaagcccatgaggtcaaggctgcagc-----------------------------------------------------------------------------------------caactatgttcacaccactgtattccagcccggatgacagggcacgaccttgACTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1364293 269 - 1807191 --cgaggtggcccatgcctgttatgccagcactttggaaagctgaatt---aggatagcctgaggccaggaattcaacactagcctgggcaacaaagggaggccctgtctctacaaaaagta-----aaatttgctgggtgtcttgacacttgcctctagtcccagctattcaggaggctgaggtaggaggattgttcaagcccaagaggtcaaggctgtagc-----------------------------------------------------------------------------------------caactatgatcacaacactgcattccagcctggatgacagggcaagaccttgACTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 44451 277 + 5963231 --cgaggtggcccatgcctgttatgccagcactttggaaggctgaggtaggaggatggcctgaggccaggagttcaagactagcctgggcaacgaagggaggccttgtctctacaaaaagtaaaattaaatttgctgggtgtcttgacgcttgcctctagtcccagctattcaggaggctgaggtaggaggattgttcaagcccatgaggtcaaggctgcagc-----------------------------------------------------------------------------------------caactatgatcacaccactgtattccagcctggatgaccgggcaagaccttgactG i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e dasNov3.JH570235 93004 574 + 1056298 I e canFam3.chr10 46113278 91 - 69331447 I e otoGar3.GL873526 36312282 88 - 42659167 I e proCoq1.NW_012136747v1 5099364 329 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=62175.000000 s hg38.chr22_GL383582v2_alt 100646 6 + 162811 acacac s panTro5.chr22 28880506 6 + 37823149 acacac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155113 6 + 50109623 acacac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3177936 6 + 4464012 ACTGac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673769 6 - 115148730 ACACAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84288205 6 + 92844088 ACACAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633244 6 - 96509753 ACACAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125061 6 - 13098629 ACACAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091842 6 - 4483953 ACACAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722480 6 + 33263144 ACACAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003206 6 - 14338769 ACACAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941157 6 + 1946073 ACACAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968492 6 - 2117846 acacac i calJac3.chrUn_GL286373 I 188 C 0 s saiBol1.JH378157 8878520 6 - 16357246 ACACAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1364562 6 - 1807191 acacac i cebCap1.NW_016107750v1 C 0 I 114 s aotNan1.NW_018512383v1 44728 6 + 5963231 acacac i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e dasNov3.JH570235 93004 574 + 1056298 I e canFam3.chr10 46113278 91 - 69331447 I e otoGar3.GL873526 36312282 88 - 42659167 I e proCoq1.NW_012136747v1 5099364 329 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=54105.000000 s hg38.chr22_GL383582v2_alt 100652 11 + 162811 acacacacaca s panTro5.chr22 28880512 11 + 37823149 acacacacaca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155119 11 + 50109623 acacacacaca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3177942 11 + 4464012 acacacacaca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673775 11 - 115148730 CCACACACACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84288211 8 + 92844088 ACATACAC--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633250 8 - 96509753 ACATACAC--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125067 8 - 13098629 ACATACAC--- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091848 8 - 4483953 ACATACAC--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722486 8 + 33263144 ACATACAC--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003212 8 - 14338769 ACATACAG--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941163 8 + 1946073 ACGTACAC--- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968498 11 - 2117846 acacacacaca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878526 11 - 16357246 ACATACACACA i saiBol1.JH378157 C 0 I 123 s cebCap1.NW_016107750v1 1364682 11 - 1807191 ACACACACACA i cebCap1.NW_016107750v1 I 114 C 0 s aotNan1.NW_018512383v1 44734 11 + 5963231 acatacacaca i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e dasNov3.JH570235 93004 574 + 1056298 I e canFam3.chr10 46113278 91 - 69331447 I e otoGar3.GL873526 36312282 88 - 42659167 I e proCoq1.NW_012136747v1 5099364 329 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=69196.000000 s hg38.chr22_GL383582v2_alt 100663 21 + 162811 cacac---------------------------------------CCTGCACATACTTCCC s panTro5.chr22 28880523 54 + 37823149 cacacacacacacacacacacacacac-----ca-cacacacacCCTGCACATACTTCCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155130 60 + 50109623 cacacacacacacacacacacacacacacacacaccacacacacCCTGCACATACTTCCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3177953 49 + 4464012 cacacacacacacacacacacacacacacacaca-cacac----------CATACTTCCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673786 17 - 115148730 C-------------------------------------------CCTGCACATACTTCCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84288219 16 + 92844088 --------------------------------------------CCTGCACATACTTCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633258 16 - 96509753 --------------------------------------------CCTGCACATACTTCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125075 16 - 13098629 --------------------------------------------CCTGCACATACTTCCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091856 16 - 4483953 --------------------------------------------CCTGCACATACTTCCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722494 16 + 33263144 --------------------------------------------CCTGCACGTACTTCCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003220 16 - 14338769 --------------------------------------------CCTGCACATACTTCCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941171 16 + 1946073 --------------------------------------------CCTGCACATACTTCCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968509 21 - 2117846 ---------------------------------------cacCCCTTGCACATACTTCCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878660 21 - 16357246 ---------------------------------------CACCCCCTGCACATACTTCCC i saiBol1.JH378157 I 123 C 0 s cebCap1.NW_016107750v1 1364693 21 - 1807191 ---------------------------------------CGCCCCTTGCACATACTTCCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 44745 20 + 5963231 ---------------------------------------cacccc-tgcacataattccc i aotNan1.NW_018512383v1 C 0 I 109 s canFam3.chr10 46113369 21 - 69331447 ---------------------------------------GATATCCTGCATAAAAATAGA i canFam3.chr10 I 91 C 0 e mm10.chr15 82832840 662 + 104043685 I e dasNov3.JH570235 93004 574 + 1056298 I e otoGar3.GL873526 36312282 88 - 42659167 I e proCoq1.NW_012136747v1 5099364 329 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=69941.000000 s hg38.chr22_GL383582v2_alt 100684 6 + 162811 AGGAAG s panTro5.chr22 28880577 6 + 37823149 AGGAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155190 6 + 50109623 AGGAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178002 6 + 4464012 AAGAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673803 6 - 115148730 AGGAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84288235 6 + 92844088 AGGAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633274 6 - 96509753 AGGAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125091 6 - 13098629 AGGAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091872 6 - 4483953 AGGAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722510 6 + 33263144 AGGAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003236 6 - 14338769 AGGAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941187 6 + 1946073 AGGAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968530 6 - 2117846 AAGAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878681 6 - 16357246 AGGAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1364714 6 - 1807191 AGGAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 44874 6 + 5963231 AGGAAG i aotNan1.NW_018512383v1 I 109 C 0 s canFam3.chr10 46113390 6 - 69331447 AGGAAA i canFam3.chr10 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e dasNov3.JH570235 93004 574 + 1056298 I e otoGar3.GL873526 36312282 88 - 42659167 I e proCoq1.NW_012136747v1 5099364 329 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=10285.000000 s hg38.chr22_GL383582v2_alt 100690 1 + 162811 T s panTro5.chr22 28880583 1 + 37823149 T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155196 1 + 50109623 T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178008 1 + 4464012 T i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673809 1 - 115148730 T i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84288241 1 + 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633280 1 - 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125097 1 - 13098629 T i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091878 1 - 4483953 T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722516 1 + 33263144 T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003242 1 - 14338769 T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941193 1 + 1946073 T i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968536 1 - 2117846 T i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878687 1 - 16357246 T i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1364720 1 - 1807191 T i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 44880 1 + 5963231 T i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46113396 1 - 69331447 A i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 93578 1 + 1056298 T i dasNov3.JH570235 I 574 C 0 e mm10.chr15 82832840 662 + 104043685 I e otoGar3.GL873526 36312282 88 - 42659167 I e proCoq1.NW_012136747v1 5099364 329 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=92385.000000 s hg38.chr22_GL383582v2_alt 100691 10 + 162811 ACCAGCACTG s panTro5.chr22 28880584 10 + 37823149 ACCAGCACTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155197 10 + 50109623 ACCAGCACTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178009 10 + 4464012 ACCAGCACTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673810 10 - 115148730 GCCAGCACTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84288242 10 + 92844088 GCCAATACTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633281 10 - 96509753 GCCAATACTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125098 10 - 13098629 GCCAATACTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091879 10 - 4483953 GCCAATACTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722517 10 + 33263144 GCCAATACTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003243 10 - 14338769 GCCAATACTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941194 10 + 1946073 GCCAATACTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968537 10 - 2117846 GCCAGTAGCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878688 10 - 16357246 GCCAGTAGCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1364721 10 - 1807191 GCCAGTAGCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 44881 10 + 5963231 GCCAGTAGCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36312370 10 - 42659167 ACCAGTAGTG i otoGar3.GL873526 I 88 C 0 s canFam3.chr10 46113400 10 - 69331447 CCCAGTACTG i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 93579 10 + 1056298 ATCAGCAGGG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e proCoq1.NW_012136747v1 5099364 329 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=696051.000000 s hg38.chr22_GL383582v2_alt 100701 49 + 162811 ATCCCTAGTCATTTT--GTTACTCTCTAGTCCCATGTGGAATGGATGGTCC s panTro5.chr22 28880594 51 + 37823149 ATCCCTAGTCATTTTCTGTTACTCTCTAGTCCCATGTGGAATGGATGGTCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155207 51 + 50109623 ATCCCTAGTCATTTTCTGTTACTCTCTAGTCCCATGTGGAATGGATGGTCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178019 50 + 4464012 ATCCCTAGTCATTTTC-GTTACTCTCTAGTCCCATGTGGAATGGATGGTCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673820 51 - 115148730 ATCCCTAGTCATTTTCTGTTACTCTCTAGTCCCATGTGGAATGGATGGTCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84288252 51 + 92844088 ATCCCTAGTCATTTTCTGTTACTCTCTATTCCCATGTGGAGTGGATGGTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633291 51 - 96509753 ATCCCTAGTCATTTTCTGTTACTCTCTATTCCCATGTGGAGTGGATGGTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125108 51 - 13098629 ATCCCTAGTCATTTTCTGTTACTCTCTATTCCCATGTGGAGTGGATGGTCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091889 51 - 4483953 ATCCCTAGTCATTTTCTGTTACTCTCTATTCCCATGTGGAGTGGATGGTCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722527 51 + 33263144 ATCCCTAGTCATTTTCTGTTACTCTCTATTCCCATGTGGAGTGGATGGTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003253 51 - 14338769 ATCCCTAGTCATTTTCTGTTACTCTCTATTCCCATGTGGAGTGGATGGTCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941204 51 + 1946073 ATCCCTAGTCATTTTCTGTTACTCTCTATTCCCATGTGGAATGGATGGTCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968547 51 - 2117846 ATCCCTAGTCATTTTCTGTTACTCTCTACTCCCACGTGGAATGGATGGTCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878698 51 - 16357246 ATTCCTAGTCATTTTCTGTTACTCTCTACTCCCACTTGGAATGGAAAGTCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1364731 51 - 1807191 ATCCCTAGTCATTTTCTGTTACTCTCTACTCCCATGTGGAATGGATGGTCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 44891 51 + 5963231 ATCCCTAGTCATTTTCTGTTACTCTCTACTCCCACGTGGAATGGATGGTCC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5099693 51 - 6317780 ATCCCTAGTCATTTTCTCTTACTTTCCACTCCCATGTGGAATGGATGGTCC i proCoq1.NW_012136747v1 I 329 I 32 s otoGar3.GL873526 36312380 50 - 42659167 ATCCCTA-TCATTTTCTGTTACTCCCCAGCCCCACGTGAAATGGATGACTC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46113410 24 - 69331447 ---------------------------ATTCCCACAAGGAATGGACGGCCC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 93589 51 + 1056298 ATACCCAGTCCTTTCCTGCTACCCTCTGCTCCCGTGACAAATAGATAGCCC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e micMur3.chr7 5735091 864 + 108171978 I a score=398473.000000 s hg38.chr22_GL383582v2_alt 100750 34 + 162811 CTTGAAACTACAAAGGCCGTCTGTGCTTGTCTGC s panTro5.chr22 28880645 34 + 37823149 CTTGAAACTACAAAGGCCGTCTGTGCTTGTCTGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155258 34 + 50109623 CTTAAAACTACAAAGGCCGTCTGTGCTTGTCTGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178069 34 + 4464012 CTTGAAACTACAAAGGCCATCTGTGCTTGTCTGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673871 34 - 115148730 CTTGAAACTACAAAGGCCCTCTGTGCTTGTCTGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84288303 34 + 92844088 CTTGAAACTACAAAGGCCCTCTAGGCTTGTCTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633342 34 - 96509753 CTTGAAACTACAAAGGCCCTCTAGGCTTGTCTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125159 34 - 13098629 CTTGAAACTACAAAGGCCCTCTAGGCTTGTCTGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091940 34 - 4483953 CTTGAAACTACAAAGGCCCTCTAGGCTTGTCTGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722578 34 + 33263144 CTTGAAACTACAAAGGCCCTCTAGGCTTGTCTGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003304 34 - 14338769 CTTGAAACTACAAAGGCCCTCTAGGCTTGTCTGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941255 34 + 1946073 CTTGAAACTACAAAGGCCCTCTAGGCTTGTCTGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968598 33 - 2117846 CTTGAAACTACAAAGGCCCTCTGGGCTTG-CTGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878749 33 - 16357246 CTTGAAACTACAAAGGCCCTCTGGGCTTG-CTGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1364782 34 - 1807191 CTTAAAACTACAAAGGCCCTCTGGGCTTGTCTGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 44942 33 + 5963231 CTTGAAACTACAAAGGCCCTCTGGGCTTG-ATGC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36312430 34 - 42659167 CCTGCAACCTGTAGGGCCCTCTGGGCTCACCTGT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46113434 33 - 69331447 CCTG-AACAACCAGTGCCTTCTGGGCTAATCTTC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 93640 34 + 1056298 CCTGAAGCCGCCAGAGCCCTCTGGGCTTCTCTGC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e proCoq1.NW_012136747v1 5099744 32 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=392272.000000 s hg38.chr22_GL383582v2_alt 100784 35 + 162811 AAGGCTA---------TGGGC-AG----------------CAGCACAG---------ACATCCAGGAGGA s panTro5.chr22 28880679 35 + 37823149 AAAGCTA---------TGGGC-AG----------------CAGCACAG---------ACATCCAGGAGGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155292 35 + 50109623 AAAGCTA---------TGGGC-AG----------------CAGCACAG---------ACATCCAGGAGGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178103 35 + 4464012 AAGGCTA---------TGGGC-AG----------------CAGCACAG---------ACATCCAGGAGGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673905 35 - 115148730 AAGGCTA---------TGGGC-AG----------------CAGCACAG---------ACACCCAGGAGGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84288337 32 + 92844088 AAGGCTA---------TGGGC-AG----------------CATCACAG---------ACATCC---AGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633376 32 - 96509753 AAGGCTA---------TGGGC-AG----------------CATCACAG---------ACATCC---AGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125193 32 - 13098629 AAGGCTA---------TGGGC-AG----------------CATCACAG---------ACATCC---AGGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4091974 32 - 4483953 AAGGCTA---------TGGGC-AG----------------CATCACAG---------ACATCC---AGGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722612 32 + 33263144 AAGGCTA---------TGGGC-AG----------------CATCACAG---------ACATCC---AGGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003338 32 - 14338769 AAGGCTA---------TGGGC-AG----------------CATCACAG---------ACATCC---AGGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941289 32 + 1946073 AAGGCTA---------TGGGC-AG----------------CATCACAG---------ACATCC---AGGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968631 35 - 2117846 ATGGCTA---------TGGGG-AG----------------CAGCACAG---------ATATCCAGGAGGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878782 35 - 16357246 ATGGCTC---------TGGAC-AG----------------CAGCACAG---------ATATCCAGGAGGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1364816 35 - 1807191 ATGGCTA---------TGGGC-AG----------------CAGCACAG---------ATATCCAGGAGGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 44975 36 + 5963231 ATGGCTA---------TGGGCAAA----------------CAGCACAG---------ATATCCAGGAGGA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5099776 35 - 6317780 AAGGCTA---------TGGGC-AG----------------CAGCACAG---------ACATCCAGGAGGA i proCoq1.NW_012136747v1 I 32 I 109 s otoGar3.GL873526 36312464 44 - 42659167 AAGGCTG---------TGGGC-AG----------------CAGTGAGGATGCCCTGTACACCTGGGAGGA i otoGar3.GL873526 C 0 I 7 s canFam3.chr10 46113467 43 - 69331447 AAGGCCAAGCCAGAGGTGGGC-AG----------------CAGCACAG---------ACATCCAGAAGA- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 93674 51 + 1056298 TATGTCA---------TGGGA-AGCTGGGGATCCAGGTGCCAGCACAG---------ACACCCAGGAGGT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e micMur3.chr7 5735091 864 + 108171978 I a score=892556.000000 s hg38.chr22_GL383582v2_alt 100819 91 + 162811 GTTAAAGCT---AACAATCTACTATTGCT-ACTAAAC-CAAACCCAGCTATGCTGCCACACAAAGGGGTTCCTTTTG--------------TCTATTTAGAGCGTATTTT- s panTro5.chr22 28880714 91 + 37823149 GTTAAAGCT---AACAATCTACTATTGCT-ATTAAAC-CAAACCCAGCTATGCTGCCACACAAAGGGGTTCCTTTTG--------------TCTATTTAGAGCGTATTTT- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155327 91 + 50109623 GTTAAAGCT---AACAATCTACTATTGCT-ATTAAAC-CAAACCCAGCTATGCTGCCACACAAAGGGGTTCCTTTTG--------------TCTATTTAGAGTGTATTTT- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178138 91 + 4464012 GTTAAAGCT---AACAATCTACTATTGCT-ATTAAAC-CAAACCCAGCTATGCTGCCACACAAAGGGGTTCCTTTTG--------------TCTATTTAGAGCGTATTTT- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106673940 90 - 115148730 GTTAAAGCT---AACAATCTACTATTGCT-ATTAAAC-CAAATCCAGCTATGCTGTCACAC-AAGGTGTTCCTTTTG--------------TCTACTTAGAGCGTATTTT- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84288369 92 + 92844088 GTTAATGCT---AACAATCTACTACTGCTGATTAAAC-CAAACCCAGCTATGCTGCCACACATAGGTGTTCCTTTTG--------------TCTATTTGGAGTGTATTTT- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633408 92 - 96509753 GTTAATGCT---AACAATCTACTACTGCTGATTAAAC-CAAACCCAGCTATGCTGCCACACATGGGTGTTCCTTTTG--------------TCTATTTGGAGTGTATTTT- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125225 92 - 13098629 GTTAATGCT---AACAATCTACTACTGCTGATTAAAC-CAAACCCAGCTATGCTGCCACACATAGGTGTTCCTTTTG--------------TCTATTTGGAGTGTATTTT- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092006 92 - 4483953 GTTAATGCT---AACAATCTACTACTGCTGATTAAAC-CAAACCCAGCTATGCTGCCACACATAGGTGTCCCTTTTG--------------TCTATTTGGAGTGTATTTT- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722644 92 + 33263144 GTTAATGCT---AACAATCTACTACTGCTGATTAAAC-CAAACCCAGCTATGCTGCCACACATAGGTGTTCCTTTTG--------------TCTATTTGGAGTGTATTTT- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003370 92 - 14338769 GTTAATGCT---AACAATCTACTACTGCTGATTAAAC-CAAACCCAGCTATGCTGCCACACATAGGTGTTCCTTTTG--------------TCTATTTGGAGTGTATTTT- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941321 92 + 1946073 GTTAATGCT---AACAATCTACTATTGCTGATTAAAC-CAAACCCAGCTATGCTGCCACACATAGGTGTTCCTTTTG--------------TCTATTTGGAGTGTATTTT- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968666 90 - 2117846 GCTAATGCT---AACAATCTACTACTGCTGATTAAAC-CAAACCCAGCTATGCCGCCACACATAGCTGCTCCTTTTG--------------TCTATTTAGAGCATATT--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878817 90 - 16357246 GCTAATGCT---AACAATCTACTACTGCTGCTTAAAC-CAAACCCAGCTATGCCGCCACACATAGGTGCTCCTTTTG--------------TCTATTTAGAGCATATT--- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1364851 90 - 1807191 GCTAATGCT---AACAATCTATTACTGCTGATTAAAC-CAAACCCAGCTATGCCGCCACACATAGGTGCCCCTTTTG--------------TCTATTTAGAGCATATT--- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 45011 90 + 5963231 GCTAATGCT---AACAATCTACTACCGCTGACTAAAC-CAAACCCAGCTATGCCGCCACACATAGGTGCTCCTTTTG--------------TCTATTTAGAGTGTATT--- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36312515 54 - 42659167 GTTAA-------AACAATCGCCTACTGGTGATTAAAT-CACACCCAGCTATTTTGCTGCTTA------------------------------------------------- i otoGar3.GL873526 I 7 C 0 s canFam3.chr10 46113510 107 - 69331447 GCTGGCTCTTAAAACAACCCACCACTAGCGACTAAACTTAAAGGGAGGTATGTTGCTACTTATATGCACTTGTTTTGAACATTTATCTT--TTTATTGGGACCTTTTTA-- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 93725 104 + 1056298 GCCAGCTAC---TAAAATATACTAGAG---ATTAAAC-TGAACTCAGCAATACTGCCACGTACATGCACGTATTTTGAACATTTATCTTTGTCTACATTAGATAAGTTTTT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82832840 662 + 104043685 I e proCoq1.NW_012136747v1 5099811 109 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=9555.000000 s hg38.chr22_GL383582v2_alt 100910 1 + 162811 A s panTro5.chr22 28880805 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155418 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178229 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106674030 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84288461 1 + 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633500 1 - 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125317 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092098 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722736 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003462 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941413 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s mm10.chr15 82833502 1 + 104043685 A i mm10.chr15 I 662 C 0 s canFam3.chr10 46113617 1 - 69331447 A i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 93829 1 + 1056298 A i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 45101 0 + 5963231 C e otoGar3.GL873526 36312569 0 - 42659167 C e proCoq1.NW_012136747v1 5099811 109 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I e cebCap1.NW_016107750v1 1364941 0 - 1807191 C e saiBol1.JH378157 8878907 0 - 16357246 C e calJac3.chrUn_GL286373 1968756 0 - 2117846 C a score=826837.000000 s hg38.chr22_GL383582v2_alt 100911 75 + 162811 CAGGTCAGACACAGT-A---TTTAACCA--CTTATTCCCCACCCTCAGCTATC-TGCTT-TACTATGTACACTTTAT---TGATG---A s panTro5.chr22 28880806 78 + 37823149 CAGGTCAGACACAGT-AGTATTTAACCA--CTTATTCCCCACCCTCAGCTATC-TGCTT-TACTATGTACACTTTAT---TGATG---A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155419 75 + 50109623 CAGGTCAGACACAGT-A---TTTAACCA--CTTATTCCCCACCCTCAGCTATC-TGCTT-TACTATGTACACTTTAT---TGATG---A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178230 75 + 4464012 CAGGTCAGACACAGT-A---TTTAACCA--CTTATTCCCCACCCTCAGCTATC-TGCTT-TACTATGTACACTTTAC---TGATG---A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106674031 78 - 115148730 CAGGTCAGGCACAGT-A---TTTAACCA--CTTATTCCCCACCCTCAGCTATC-TGCTT-TAGTATGTACACTTTATTAATGATA---A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84288462 78 + 92844088 CAGGTCAGGCACAGT-A---TTTAACCA--CTTATTCCCCACCCTCAGCTATC-TGTTT-TAGTATGTACACTTTAT---TGATGATAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633501 78 - 96509753 CAGGTCAGGCACAGT-A---TTTAACCA--CTTATTCCCCACCCTCAGCTATC-TGTTT-TAGTATGTACACTTTAT---TGATGATAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125318 78 - 13098629 CAGGTCAGGCACAGT-A---TTTAACCA--CTTATTCCCCACCCTCAGCTATC-TGTTT-TAGTATGTACACTTTAT---TGATGATAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092099 78 - 4483953 CAGGTCAGGCACAGT-A---TTTAACCA--CTTATTCCCCACCCTCAGCTATC-TGTTT-TAGTATGTACACTTTAT---TGATGATAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722737 78 + 33263144 CAGATAAGGCACAGT-A---TTTAACCA--CTTATTCCCCACCCTCAGCTATC-TGTTT-TAGTATGTACACTTTAT---TGATGATAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003463 78 - 14338769 CAGGTCAGGCACAGT-A---TTTAACCA--CTTATTCCCCACCCTCAGCTATC-TGTTT-TAGTATGTACACTTTAT---TGATGATAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941414 75 + 1946073 CAGGTCAGGCACAGT-A---TTTAACCA--CTTATTCCCCACCCTCAGCTATC-TGCTT-TAGTATGTACACTTTAT---TGATG---A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968756 62 - 2117846 --------------------TTTAACCA--CTTATTCCCCACTATCAGCTATC-TACTT-TTGTATGTACATTTTATTGATGATG---A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878907 59 - 16357246 --------------------TTTAATCA--CTTATTCCCCACTATCAGCTATG-TACTT-TTGTATGTACGTTTTAT---TGATG---A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1364941 62 - 1807191 --------------------TTTAACCA--CTTATTCCCCACTATCAGCTATC-TACTT-TTGTATGTACATTTTATTGATGATG---A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 45101 60 + 5963231 --------------------TTTAACTA--CTTATTCCCCACTATCAGCTATC-TACTTCTTGTATGTACATTTTAT---TGATG---A i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5099920 75 - 6317780 CAGGTCAGGCACAGC-A---TTTAATCA--CTTATCCCCCACCCTCAGCTATC-TGTTT-TCATATGCATACTTTAC---TGATG---A i proCoq1.NW_012136747v1 I 109 I 76 s otoGar3.GL873526 36312569 74 - 42659167 CAGGCCAGGCACAGCTA---TTTAGCAA--CTTA--ACCCACTCGCAGCTATC-TATGT-TCATATGCACACTTTAC---TGATG---T i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82833503 65 + 104043685 CATTTCACGCACAAT-A---TCT-----------TTACGTATGCTCAGTCATCTTGCTT-CAGTGTGAGCAC--TAC---AGATG---A i mm10.chr15 C 0 C 0 s canFam3.chr10 46113618 74 - 69331447 CAGGTCAGGCACAGT-A---TTCCCCCC-TCTTTATTCCCACCCTCAATTATA-TGTCT-TAATATAAACAC--TAC---TGATG---A i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 93830 76 + 1056298 CAGGTCAG-CACAGT-G---TTTAGCCACCCTTATTCCCTATCCTCAATTATA-TGTTT-TAATATGGACACTTTAT---TGATG---A i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5735091 864 + 108171978 I a score=1865181.000000 s hg38.chr22_GL383582v2_alt 100986 167 + 162811 ---TGTTT-AAGT-----AACATGTGAAAATA---TGGCA-GGTGA----TACTAATAATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCGTAATTATCACACATGGTATGAACTTCAACTGCAGATATG-GTAGGC--AGATATCAGCCACTTG-----CTGTGGGTTTTTAATGTTCTGTAACACTGT---- s panTro5.chr22 28880884 168 + 37823149 ---TGTTTTAAGT-----AACATGTGAAAATA---TGGCA-GGTGA----TACTAATAATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCGTAATTATCACACATGGTATGAACTTCAACTGCACATATG-GTAGGC--AGATATCAGCCACTTG-----CTGTGGGTTTTTAATGTTCTATAACACTGT---- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155494 167 + 50109623 ---TGTTT-AAGT-----AACATGTGAAAATA---TGGCA-GGTGA----TACTAATAATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCGTAATTATCACACATGGTATGAACTTCAACTGCACATATG-GTAGGC--AGATATCAGCCACTTG-----CTGTGGGTTTTTAATGTTCTATAACACTGT---- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178305 167 + 4464012 ---TGTTT-AAGT-----AATATGTGAAAATA---TGGCA-GGTGA----TACTAATTATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCGTAATTATCACACATGGTATGAACTTCAACTGCAGATACG-GTAGGC--AGATATCAGCCACTTG-----CTGTGGGTTTTTAATGTTCTATAACACTGT---- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106674109 167 - 115148730 ---TGTTT-AAGT-----AACATGTGAAAATA---TGGCA-GGTGA----TACTAATTATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCGTAATTATCATACATGGTATGAACTTCAACTGCAAACATG-GTAGGC--AGATATCAGCCACTTG-----CTGTGGGTTTTTAATGTTCTATAACACCGT---- i nomLeu3.chr7b C 0 I 1 s rheMac8.chr10 84288540 167 + 92844088 ---TGTTA-AAGT-----AGCACATAAAAATA---TGGCA-GGTGC----TACTAATTATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCATAATTATCACACATGGTATGAACTTCAACTGCAGATATG-GTAGGC--AGATATCAGCCACTTG-----CTGTAGGTTTTTAATGTTCTACAACACCGT---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633579 167 - 96509753 ---TGTTA-AAGT-----AACACATAAAAATA---TGGCA-GGTGC----TACTAATTATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCATAATTATCACACATGGTATGAACTTCAACTGCAGATATG-GTAGGC--AGATATCAGCCACTTG-----CTGTAGGTTTTTAATGTTCTACAACACCGT---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125396 167 - 13098629 ---TGTTA-AAGT-----AACACATAAAAATA---TGGCA-GGTGC----TACTAATTATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCATAATTATCACACATGGTATGAACTTCAACTGCAGATATG-GTAGGC--AGATATCAGCCACTTG-----CTGTAGGTTTTTAATGTTCTACAACACCGT---- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092177 167 - 4483953 ---TGTTA-AAGT-----AACACATGAAAATA---TGGCA-GGTGC----TACTAATTATTTCTACCAAAGTGCCCACAAAAAAGAA--AGTTCATAATTATCACACATGGTATGAACTTCAACTGCAGATATG-TTAGGC--AGATATCAGCCACTTG-----CTGTAGGTTTTTAATGTTCTACAACACCGT---- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722815 167 + 33263144 ---TGTTA-AAGT-----AACACATGAAAATA---TGGCA-GGTGC----TACTAATTATTTCTACCAAGGTGCCCACAAGAAAGAA--AGTTCATAATTATCACACATGGTATGAACTTCAACTGCAGATATG-GTAGGC--AGATATCAGCCACTTG-----CTGTAGGTTTTTAATGTTCTACAACACCAT---- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003541 167 - 14338769 ---TGTTA-AAGT-----AACACATGAAAATA---TGGCA-GGTGC----TACTAATTATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCATAATTATCACACATGGTATGAACTTCAACTGCAGATATG-TTAGGC--AGATATCAGCCACTTG-----CTGTAGGTTTTTAATGTTCTACAACACCGT---- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941489 171 + 1946073 ---TGTTA-AAGT-----AACACATGAAAATA---TGGCA-GGTGCTACTTACTCATTATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCATAATTATCACACATGGTATGAACTTCAACTGCAGATATG-GTAGGC--AGATATCAGCCACTTG-----CTGTGGGTTTTTAATGTTCTACAACACCAT---- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968818 170 - 2117846 ---TGTTT-AATT-----AACATGTGAAAATACAGCAGCA-GATGC----TACTGATGAGATCTACCAAGCTGCTCACAAAGAAGAA--AATTCATAACAATCACACATGGTATGAACTTCAACTGCAGGTATG-GTAGGC--AGATATGAGCAACTCA-----CTATGGGTTTCTGATGCTCTATAACTCTGT---- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8878966 167 - 16357246 ---TGTTT-AATT-----AACATGTGAAAATA---CAGCA-GATGC----AACTGATGAGTTCTACCAAGTTGCTCACAAAGAAGAA--AGTTCGTAACAATCACACATGGTATGAACTTCAACTGCAGGTATG-GCAGGC--AGATATGAGCAACTCA-----CTGTGGGTTTTTAATGCTCTTTAACTCTGT---- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1365003 165 - 1807191 ---TGTTT-AATT-----AACATGTAAAAATA---CAGCA-GATGC----TACTGATGAGTTCTACCAAGCTGCTCACAAAGAAGAA--AGTTCATTACGGTAACATATGGTATGAACTTCAACTGAAGGTATG-GTAGGC--AGATAGGAGCAACTCA-----CTGTGGGTTTTTAATGCTCTATAA--CTGT---- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 45161 137 + 5963231 ---TGTT--------------------------------------------ACTGATGAGTTCTACCAAGCTGCTCACAAAGAAGAA--AGTTCATAACAATCACACATGGTATGAACTTCAACTGCAGGTATG-GTAGGC--AGATATGAGCAACTCA-----TTGTGGGTTTTTAATGCTCTATAACTCTGT---- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36312643 175 - 42659167 ---------AAATGTACCAACATGTGAGACTG---AGGCAGGGTAC----TGGTAATTATTTCTACCAAGGTGCCCACAAAGGGGAA--AGTTCATAATTATCAAGCATGGAATGAACTCCAACTATGGATGCA-GTAGGCATAGATACTGGCCACTTGCCTCACTGAGAATTTTAAATGTTCTAGAATTCCCT---- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82833568 169 + 104043685 ---TGATA-AACA-----AACATGTGGTACTG---AGGTG-GGTAG----CAGTAATTATTCCTAACAAGTTATCCATAAAGAGGAA--AGCTCATAATTATCACACATGGGCTGAACTTGATCTGTCATTATA-GTAGGCACAGGTACTAGCCACTTG-----CTGTGGGTTTTAAATGCTCTGCAATTCCCT---- i mm10.chr15 C 0 C 0 s canFam3.chr10 46113695 150 - 69331447 ---TGTTC-TAAA-----CATAACTAATACTA---GTTCA-GGTAC----TAGTGATTATTTCTACCAGGGTGCCCACAAAGCTGGAACAGTTTATGATGATCACGCATGGAATAAACTTCAACTGTGGATGTG-----------------GCCACCTG-----CCATGGGTTTTAAATGTTCTATAAT--------- i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 93906 164 + 1056298 TAATGTTC-TATG-----AATATGTGAGACCA---TGGCA-GTTAC----TAGTAATTATTTCTACCAAGGCGCCCCCAAAG--GGA----------ATTATCTTACATGGAATGAATTTCAACCGTGGACGTGGGGAAAC--AGATAGTGGCTGCTCT-----CTGCA-ATTTTAAATGCTCTATAATTCCCTGCCT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5099995 76 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=1781127.000000 s hg38.chr22_GL383582v2_alt 101153 125 + 162811 AACTCTAATTATCCTGGGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTATGGAGGCAAAACAAAGGAGGAACAAAAAACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTTA s panTro5.chr22 28881052 125 + 37823149 AACTCTAATTATCCTGAGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAAAAAACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155661 125 + 50109623 AACTCTAATTATCCTGGGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAAAAAACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178472 125 + 4464012 AACTCTAATTATCCTGGGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTAGGGAGGCAAAACAAAGGAGGAACAAAAAACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTGAAGTTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106674277 125 - 115148730 AACTCCAATTATCCTGGGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTATGGAGGCAAAACAAAGGAGGAACAAAAAACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTTA i nomLeu3.chr7b I 1 C 0 s rheMac8.chr10 84288707 125 + 92844088 AACTCTAATTATCCTGGGTTTACAGCTTTCAGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAAAACACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633746 125 - 96509753 AACTCTAATTATCCTGGGTTTACAGCTTTCAGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAAAACACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125563 125 - 13098629 AACTCTAATTATCCTGGGTTTACAGCTTTCAGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAAAACACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092344 125 - 4483953 AACTCTAATTATCCTGGGTTTACAGCCTTCGGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAAAACACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24722982 125 + 33263144 AACTCTAATTATCCTGGGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAAAACACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003708 123 - 14338769 AACTCTAATTATCCTGGGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAAA--ACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941660 125 + 1946073 AACTCTAATGATCCTGGGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTACAGAGGCAAAACAAAGGAGGAACAAAACACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1968988 125 - 2117846 AACTCTAATTCTCCTGGGTTTACAGCCTTCAGGTTCTGCATTCATA-----AATTTACAAAGGTAAAACAAAGGAGGAACAAAAAACAATTTCCCAAAT-AAAGTACATCCATTGGCCTCAATTTAAGTTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8879133 125 - 16357246 AACTCTAATTCTCCCGGGTTTACAGCCTTCAGTTTCTGTATTAATA-----AATTTACAAAGGCAAAATAAAGGAGGAACAAAGAACAATTTCCCAAAT-AAAATATATCCATTGGCCTCAATTTAAGTTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1365168 125 - 1807191 AACTCTAATTCTCCTGGGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTACAAAGGCAAAACAAAGGAGGAACAAAAAACAATTTCCCAAAT-AAAATACATCCAGTGGACTCAATTTAAGTTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 45298 125 + 5963231 AACTCTAATTCTCCTGGGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTACAAAGGCAAAACAAAGGAGGAACAAAAAACAATTTCCCAAAT-AAAATACATCCATTGGCCTCAATTTAAGTTA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5100071 122 - 6317780 AACTCTAATTCTCATGGGTTTTCAGCTCTCAGGTTCAGCAATAATA-----AATTTAGGGAGACGAAACGAAGCAA---TATAAAGCAACTCACCAAAT-AAAAATGACCTCCTTGCCACAATTTAAGTTA i proCoq1.NW_012136747v1 I 76 C 0 s otoGar3.GL873526 36312818 123 - 42659167 ACCTCTAAATCTCATGGGTTTTGAACTTTCAGGTTCAGGAATAATA-----AACTTAGTAAGACAAAATAAAGCAG---TATAAAGCAACTTACCAAATAAAAAAAGACTTCCTTGCCATAATTTAAGTTA i otoGar3.GL873526 C 0 I 360 s mm10.chr15 82833737 125 + 104043685 AACTCCGATTCTCTGTAGTTT-TAGTCTTCAGGATCAGCAATAATAATAATAATTTAAGAAGGT-AAACAAAGCA---ATCCAAAGCAATTTCACAAAC-AAAATTCATCCACTTGCAACAATTTAAGTTA i mm10.chr15 C 0 I 1 s canFam3.chr10 46113845 112 - 69331447 -TCCCTAATTCTCCTGGGTTTTCAGTCTTCAGCTTCAGCAGTAATA-----AATTTATGTAGGCAAAACAAA-------------ATAATTTCCCTAATAAAAATGTAACCACTTGTCACAATTTAAGTTA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 94070 120 + 1056298 ACCTCTAATTTCCCCGGGTTTACAGTCTTCAGGTTTGGCA---ATA-----AATTTAGGGAGGTAAAACAAAGCAACAA-ATAAAGCAATTTCCCAAAT-AAAGTGCATTCACTCATCACAATTTAAAGT- i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5735091 864 + 108171978 I a score=529410.000000 s hg38.chr22_GL383582v2_alt 101278 49 + 162811 AATCCAATCTATG-----TCCCCCTTCTGGAAAATTAAAGCATTACTCAAGAAG s panTro5.chr22 28881177 49 + 37823149 AATCCAATCTTTG-----TCCCCCTTCTGGAAAAttaaaacattactcaagaag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155786 49 + 50109623 AATCCAATCTTTG-----TCCCCCTTCTGGAAAAttaaaacattactcaagaag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178597 49 + 4464012 AATCCAATCTTTG-----TCCCCCTTCTGGAAAAttaaagcattactcaagaag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106674402 48 - 115148730 AATCCAATCTTTG-----TCCCCCTTCTGGAAAATTAAAGCA-TACTCAAGAAG i nomLeu3.chr7b C 0 M 166 s rheMac8.chr10 84288832 49 + 92844088 AATCCAATCTTTG-----TCCCCCTTCTGGAAAAttaaagcattactcaagaag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633871 49 - 96509753 AATCCAATCTTTG-----TCCCCCTTCTGGAAAATTAAAGCATTACTCAAGAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125688 49 - 13098629 AATCCAATCTTTG-----TCCCCCTTCTGGAAAAttaaagcattactcaagaag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092469 49 - 4483953 AATCCAATCTTTG-----TCCCCCTTCTGGAAAAttaaagcattactcaagaag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723107 49 + 33263144 AATCCAATCTTTG-----TCCCCCTTCTGGAAAATTAAAGCATTACTCAAGAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003831 49 - 14338769 AATCCAATCTTTG-----TCCCCCTTCTGGAAAATTAAAGCATTATTCAAGAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941785 49 + 1946073 AATCCAACCTTTG-----TCCCCCTTCTGGAAAAttaaagcattactcaagaag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1969113 43 - 2117846 AATCCCATCTG-----------CATTCTGGAAAATTAAAGCATTACTCAACAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8879258 43 - 16357246 AATCCAGTCTG-----------CCTTCTGGAAAATTAAAGCATTATTCAACAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1365293 43 - 1807191 AATCCAGTCTG-----------CCTTCTGGAAAATTGAAGCATTATTCAATAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 45423 43 + 5963231 AATCCAGTCTG-----------CCTTCTAGAAAATTAAAGCATTATTCAACAAG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5100193 49 - 6317780 AAACTATTCTTCA-----TCTCTCTTCTAGATTAttaaagcataactcaacagg i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36313301 48 - 42659167 aaCCTATTCCCTA-----TCCCTCTTCTAGATTATTAAA-CCTAACTCAAGAAG i otoGar3.GL873526 I 360 C 0 s mm10.chr15 82833863 45 + 104043685 AATCCATTCCCCA-----TT--CCTTCTAGG-TATTAAAACATTACTCACAAG- i mm10.chr15 I 1 C 0 s canFam3.chr10 46113957 54 - 69331447 AAACCAGTCTTCACGCCCTCCCTTTTCTAGAATGTTAAAGTGTTACGGAAGACA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 94190 38 + 1056298 -------TTTCAT-----CTCCCCTTCTAGAATACTAAAGTGTT----AGGAAG i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5735091 864 + 108171978 I a score=1485135.000000 s hg38.chr22_GL383582v2_alt 101327 127 + 162811 GCCTGGTTTAGTAATTTTT-CTCTTGCACAAAATGTATACGTA--GTTTGTTATAATGTTAATATGAAGTC-TCATAAC--------TCAGAAGGCCAAC-ACAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAA--AC s panTro5.chr22 28881226 127 + 37823149 gcctggtttagtaattttt-ctcttgcacaaaatgtatacgta--gtttgttataatgttaatatgaagtc-tcataac--------tcagaAGGCCAAC-ACAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAA--AC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155835 127 + 50109623 gcctggtttagtaattttt-ctcttgcacaaaatgtatacgta--gtttgttataatgttaatatgaagtc-tcataac--------tcagaAGGCCAAC-ACAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAA--AC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178646 127 + 4464012 gcctggtttagtaattttt-ctcttgcacaaaatgtatacata--gtttgttataatgttaatacgaagtc-tcataac--------tcagaaggccaac-acaggtgtcactaat---gatgtttctttgtgctaaccaa--ac i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84288881 127 + 92844088 gcttggtttagtaattttt-ctcttgcacaagatgtatacgta--gtttgttataatgttaatacgaagtc-tcgtaac--------tcagaAGGCCAAC-GCAGGTGtcactaat---gatgtttctttgtgctaaccaa--ac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87633920 127 - 96509753 GCTTGGTTTAGTAATTTTT-CTCTTGCACAAGATGTATACGTA--GTTTGTTATAATGTTAATACGAAGTC-TCGTAAC--------TCAGAAGGCCAAC-GCAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAA--AC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125737 127 - 13098629 gcttggtttagtaattttt-ctcttgcacaagatgtatacgta--gtttgttataatgttaacacgaagtc-ttgtaac--------tcagaaggccaac-gcaggtgtcactaat---gatgtttctttgtgctaaccaa--ac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092518 127 - 4483953 gcttggtttagtaattttt-ctcttgcacaagatgtatacgta--gtttgttataatgttaatacgaagtc-tcataac--------tcagaaggccaac-gcaggtgtcactaat---gatgtttctttgtgctaaccaa--ac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723156 127 + 33263144 GCTTGGTTTAGTAATTTTT-CTCTGGCACAAGATGTATACGTA--GTTTGTTATAATGTTAATACAAAGTC-TCATAAC--------TCAGAAGGCCAAC-GCAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAA--AC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14003880 127 - 14338769 GCTTGGTTTAGTAATTTTT-CTCTTGCACAAGATGTATACGTA--GTTTGTTATAATGTTAATACGAAGTC-TCATAAT--------TCAGAAGGCCAAC-GCAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAA--AC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941834 127 + 1946073 gcttggtttagtaattttt-ctcttgcacaacatgtatatgta--gtttgttataatgttaatatgaagtc-tcataac--------tcagaAGGCCAAC-ACAGGTGtcactaat---gatgtttctttgtgctaaccaa--ac i colAng1.NW_012115588v1 C 0 I 1 s calJac3.chrUn_GL286373 1969156 127 - 2117846 GCTTGGTTTAGTAATTTTT-CTCTTGGACAAAACATATACATC--ATTTGTTATAATGTTAATACAATGTC-TTATCAC--------TCAGAAGGCCAAC-AAAGGCGTCAATAAT---GAAGTTTCTTTGTGCTAACTAA--AC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8879301 127 - 16357246 GCTTGGTTTAGTAATTTTT-CTTTTGGACAAAACGTATACATC--ATTTGTTATAATATTAATACAATGTC-TTATCAC--------TCAGAAAGCCAAC-ACAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAA--AC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1365336 127 - 1807191 GCTTGGTTTAGTAATTTTT-CTCTTGGACGAAACGTATACATC--ATTTGTTATAATGTTAATACAATGTC-TTATCAc--------tcagaaggccaac-acaggtgtcactaat---gatgtttctttgtgctaaccaa--ac i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 45466 126 + 5963231 GCTTGGTTTAGTAATTTTT-CTCTTGGACAAAATGTATATATC--A-TTGTTATAATGTTAATACAATGTC-TTATCAC--------TCAGAAGGCCAAC-ACAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAA--AC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5100242 129 - 6317780 gcttggtttaatcattttt-cccttgcacacaatgcatacatattgtttgttgtaatgtcaatacatattc-tcataac--------tcaaaaagacaac-acaagtttcactaat---gatgtttctttgggctaagcag--ac i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36313349 126 - 42659167 GCTTGGTTTAATCACTTTT-CTCTTGCATAAAATGCATACGTATTGTTTGCC---ATGTTAATATATATTC-TCATAAC--------TAAAAAAATCAAT-ACAAGTTTCACCAGT---GGCATTTCTTAGGGCTAAGCAG--AC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82833908 118 + 104043685 GTTTGCTTTAGTCATGTTT-CTCTTG--CAAAGTACACCCATA--TTCT----TACTGTCAGAACTATGG--TTATTAT--------GC-----GCCAGCAACAGGCTTCAGCAGT---GATGGTTCTGTGGGCTGTCCAGCTGC i mm10.chr15 C 0 C 0 s canFam3.chr10 46114011 106 - 69331447 GCTTGGTT--------TTT-CTTTTACACAAAATGTATAT-----ATTCTTCATAATTCTA---------C-TTAT------------CAAAAAGTCTGC-ATAGGTTTTGCTAATAAGGATGTGTCTTTGGGCTAACCAG--AC i canFam3.chr10 C 0 I 37 s dasNov3.JH570235 94228 134 + 1056298 GCTTGGTTTAGTCTTTTTTCCCCTTGTACAAA---CATGCATT--GTTTGTTACAATGTTAATATATATTCTTCATAATTCCAATTATCAAAAAGTCAAC-ATAAGTTTCATTAAT---AAATTTTCTTTGCGCTGCACAG--AC i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5735091 864 + 108171978 I e nomLeu3.chr7b 106674450 166 - 115148730 M a score=139536.000000 s hg38.chr22_GL383582v2_alt 101454 20 + 162811 -TTGCC--TTTTTTTCTGAAACA s panTro5.chr22 28881353 20 + 37823149 -TTGCC--TTTTTTTCTGAAACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155962 20 + 50109623 -TTGCC--TTTTTTTCTGAAACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178773 20 + 4464012 -ttgcc--tttttttctgaaaca i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84289008 20 + 92844088 -ttgcc--tttttttctgaaaca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634047 20 - 96509753 -TTGCC--TTTTTTTCTGAAACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125864 20 - 13098629 -ttgcc--tttttttctgaaaca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092645 20 - 4483953 -ttgcc--tttttttctgaaaca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723283 20 + 33263144 -TTGCC--TTTTTTTCTGAAACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004007 20 - 14338769 -TTGCC--TTTTTTTCTGAAACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941962 20 + 1946073 -ttgcc--ttttttcctgaaaca i colAng1.NW_012115588v1 I 1 C 0 s calJac3.chrUn_GL286373 1969283 17 - 2117846 -TGGCC--TTTCTT-CTGAA--A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8879428 17 - 16357246 -TTGCC--TTTCTT-CTGAA--A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1365463 16 - 1807191 -ttgcc--tttctt-ctgaa--- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 45592 17 + 5963231 -TTGCC--TTTCTT-CTGAA--A i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5100371 20 - 6317780 -ttgct--ttttcccctgaaaca i proCoq1.NW_012136747v1 C 0 I 3 s otoGar3.GL873526 36313475 20 - 42659167 -TTGCTTCTTTTCCCCTGAAG-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82834026 11 + 104043685 -TTGTT--TTTAAT--------- i mm10.chr15 C 0 C 0 s dasNov3.JH570235 94362 12 + 1056298 CTTGCT--TTTTTC--------- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46114117 37 - 69331447 I e micMur3.chr7 5735091 864 + 108171978 I e nomLeu3.chr7b 106674450 166 - 115148730 M a score=50225.000000 s hg38.chr22_GL383582v2_alt 101474 5 + 162811 CAGTT s panTro5.chr22 28881373 5 + 37823149 CAGTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155982 5 + 50109623 CAGTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178793 5 + 4464012 cagtt i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84289028 5 + 92844088 cggtt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634067 5 - 96509753 CAGTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125884 5 - 13098629 cagtt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092665 5 - 4483953 cagtt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723303 5 + 33263144 CAGTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004027 5 - 14338769 CAGTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941982 5 + 1946073 cagtt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1969300 5 - 2117846 CAGTT i calJac3.chrUn_GL286373 C 0 I 283 s saiBol1.JH378157 8879445 5 - 16357246 CAGTT i saiBol1.JH378157 C 0 I 289 s cebCap1.NW_016107750v1 1365479 4 - 1807191 -agtt i cebCap1.NW_016107750v1 C 0 I 286 s aotNan1.NW_018512383v1 45609 5 + 5963231 CAGTA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36313495 5 - 42659167 CAGTG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82834037 5 + 104043685 TGGTT i mm10.chr15 C 0 C 0 e dasNov3.JH570235 94374 0 + 1056298 C e canFam3.chr10 46114117 37 - 69331447 I e proCoq1.NW_012136747v1 5100391 3 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I e nomLeu3.chr7b 106674450 166 - 115148730 M a score=10920.000000 s hg38.chr22_GL383582v2_alt 101479 1 + 162811 T s panTro5.chr22 28881378 1 + 37823149 T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155987 1 + 50109623 T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178798 1 + 4464012 t i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84289033 1 + 92844088 t i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634072 1 - 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125889 1 - 13098629 t i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092670 1 - 4483953 t i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723308 1 + 33263144 T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004032 1 - 14338769 T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941987 1 + 1946073 t i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1969588 1 - 2117846 T i calJac3.chrUn_GL286373 I 283 C 0 s saiBol1.JH378157 8879739 1 - 16357246 T i saiBol1.JH378157 I 289 C 0 s cebCap1.NW_016107750v1 1365769 1 - 1807191 T i cebCap1.NW_016107750v1 I 286 C 0 s aotNan1.NW_018512383v1 45614 1 + 5963231 T i aotNan1.NW_018512383v1 C 0 I 287 s mm10.chr15 82834042 1 + 104043685 T i mm10.chr15 C 0 C 0 e dasNov3.JH570235 94374 0 + 1056298 C e canFam3.chr10 46114117 37 - 69331447 I e otoGar3.GL873526 36313500 0 - 42659167 C e proCoq1.NW_012136747v1 5100391 3 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I e nomLeu3.chr7b 106674450 166 - 115148730 M a score=300424.000000 s hg38.chr22_GL383582v2_alt 101480 36 + 162811 GCAttttattattattttttagatg-gagtctcactc s panTro5.chr22 28881379 36 + 37823149 GCAttttattattattttttagatg-gagtctcactc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41155988 36 + 50109623 GCAttttattattattttttagatg-gagtctcactc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178799 36 + 4464012 gcattttattattattttttagatg-gagtctcactc i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84289034 36 + 92844088 gcattttattattatttctgagacg-gagtctcacgc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634073 36 - 96509753 GCAttttattattatttctgagacg-gagtctcacgc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125890 36 - 13098629 gcattttattattatttctgagacg-gagtctcacgc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092671 36 - 4483953 gcattttattattatttttgagacg-gagtctcacgc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723309 36 + 33263144 GCAttttattattatttttgagacg-gagtctcacgc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004033 36 - 14338769 GCAttttatcattatttttgagacg-gagtctcacgc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 941988 36 + 1946073 gcattttattattatttttgagacg-gagtctcatgc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1969589 36 - 2117846 GCAttttattattatttttgagata-gagtctcacgc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8879740 36 - 16357246 GCAttttattattatttttgagatg-gagtctcacgc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1365770 36 - 1807191 GCAttttattattatttttgagatg-gagcctcacgc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 45902 37 + 5963231 GCAttttattattatttttgagatgagagtctcacgc i aotNan1.NW_018512383v1 I 287 C 0 s mm10.chr15 82834043 16 + 104043685 GTATTTTATC-TTACTC-------------------- i mm10.chr15 C 0 C 0 e dasNov3.JH570235 94374 0 + 1056298 C e canFam3.chr10 46114117 37 - 69331447 I e otoGar3.GL873526 36313500 0 - 42659167 C e proCoq1.NW_012136747v1 5100391 3 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I e nomLeu3.chr7b 106674450 166 - 115148730 M a score=158599.000000 s hg38.chr22_GL383582v2_alt 101516 19 + 162811 tgttgcccaggctggagta s panTro5.chr22 28881415 19 + 37823149 tgttgcccaggctggagta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41156024 19 + 50109623 tgttgcccaggctggagta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178835 19 + 4464012 tgttgcccaggctggagta i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84289070 19 + 92844088 tgtcgcccaggctggagtt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634109 19 - 96509753 tgtcgcccaggctggagtt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125926 19 - 13098629 tgtcgcccaggctggagtt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092707 19 - 4483953 tgtcgcccaggctggagtt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723345 19 + 33263144 tgtcgcccaggctggagct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004069 19 - 14338769 tgtcgcccaggctggagtt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 942024 19 + 1946073 tgtcgcccaggctggagtt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1969625 19 - 2117846 tgtggcccaggctagagtg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8879776 19 - 16357246 tgtggctcaggttggagtg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1365806 19 - 1807191 tgtggcccaggctggagtg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 45939 19 + 5963231 tgtggcccaggctggagtg i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82834059 0 + 104043685 C e dasNov3.JH570235 94374 0 + 1056298 C e canFam3.chr10 46114117 37 - 69331447 I e otoGar3.GL873526 36313500 0 - 42659167 C e proCoq1.NW_012136747v1 5100391 3 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I e nomLeu3.chr7b 106674450 166 - 115148730 M a score=270891.000000 s hg38.chr22_GL383582v2_alt 101535 29 + 162811 cagtgacgagatcttggctcact-gaaacc s panTro5.chr22 28881434 29 + 37823149 cagtgacgagatcttggctcact-gaaacc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41156043 29 + 50109623 cagtgacgagatcttggctcact-gaaacc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178854 29 + 4464012 cagtgacgagatcttggctcact-gaaacc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106674619 29 - 115148730 cagtgatgagatctggtctcaac-gaaacc i nomLeu3.chr7b M 166 C 0 s rheMac8.chr10 84289089 29 + 92844088 cagtgatgagatcttggctcacc-aaaacc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634128 29 - 96509753 cagtgatgagatcttggctcacc-aaaacc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125945 29 - 13098629 cagtgatgagatcttggctcacc-aaaacc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092726 29 - 4483953 cagtgatgagatcttggctcacc-aaaacc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723364 29 + 33263144 cagtgatgagatcttggctcacc-aaaacc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004088 29 - 14338769 cagtgatgagatcttggctcacc-aaaacc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 942043 29 + 1946073 cagtgatgagatcttggctcacc-aaaacc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1969644 29 - 2117846 cactggcaagatcttggctcacc-aaaacc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8879795 29 - 16357246 tagtggcaagatcttggctcacc-gaaacc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1365825 30 - 1807191 cagtggcgagatcttggcttaccggaaacc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 45958 29 + 5963231 cagtggcaagatcttggctcact-gaaacc i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 94374 8 + 1056298 ---------------------CT-GAAACA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82834059 0 + 104043685 C e canFam3.chr10 46114117 37 - 69331447 I e otoGar3.GL873526 36313500 0 - 42659167 C e proCoq1.NW_012136747v1 5100391 3 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=825778.000000 s hg38.chr22_GL383582v2_alt 101564 85 + 162811 tctacctccc-gggttcaagtgatgctcctgccttagcctctaaagtagct---ggatt--acaggcacccaccatcacgtccagctaact s panTro5.chr22 28881463 85 + 37823149 tctgcctccc-gggttcaagtgatgctcctgccttagcctctaaagtagct---ggatt--acaggcgcccaccaccacgtccagctaact i panTro5.chr22 C 0 C 0 s panPan2.chr22 41156072 85 + 50109623 tctgcctccc-gggttcaagtgatgctcctgccttagcctctaaagtagct---ggatt--acaggcgcccaccaccacgtccagctaact i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178883 85 + 4464012 tctacctccc-gggttcaagtgatgctcctgccttagcctctaaagcagct---ggatt--acaggcgcccaccaccacgtccagctaacc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106674648 86 - 115148730 tctacctcccggggttcaagtgatgatcctgccttagcctctaaagtagct---ggatt--acaggtgcccaccaccacatccagctaact i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84289118 85 + 92844088 tctgcctcct-gggttcaagtgattctcctgccttagcctctcaagtagct---ggatt--acaggcacccaccaccacgtccagctaatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634157 88 - 96509753 tctgcctcct-gggttcaagtgattctcctgccttagcctctcaagtagctggaggatt--acaggcacccaccaccacgtccagctaatt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7125974 85 - 13098629 tctgcctcct-gggttcaagtgattctcctgccttagcctctcaagtagct---ggatt--acaggcacccaccaccacgtccagctaatt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092755 85 - 4483953 tctgcctcct-gggttcaagtgattctcctgccttagcctctcaagtagct---ggatt--acaggcacccaccaccacgtccagctaatt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723393 85 + 33263144 tctgcctcct-gggttcaagtgattctcctgccttagcctctcaagtagct---ggatt--acaggcacccaccaccacgtccagctaatt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004117 85 - 14338769 tctgcctcct-gggttcaagtgattctcctgccttagcctctcaagtagct---ggatt--acaggcacccaccaccacgtccagctaatt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 942072 85 + 1946073 tctgcctcct-gggttcaagtgattctcctgccttagcctctcaagtagct---ggatt--acaggcacccaccaccacgtccagctaatt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1969673 85 - 2117846 tctgccttct-gggttcaagtgatgctcctgccttagcctcccgagtagct---ggatt--acaggttcacacctccatgcccagctaatt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8879824 87 - 16357246 tctgcctcct-gggttcaagtgattctcctgccttagcctcctgagtagct---ggattacacaggagcatgccaccatgcccagctaatt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1365855 85 - 1807191 tctgcctcct-aggttcaagtgattctcctgccttagcctcctgagtagct---ggatt--acaggtacatgccaccatgcccagttaact i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 45987 85 + 5963231 tctgcttcct-gggttcaagtgattctcctgccttagcctcctgagtagct---ggatt--acaggtacatgccaccatgcccagctaatt i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82834059 0 + 104043685 C e dasNov3.JH570235 94382 0 + 1056298 C e canFam3.chr10 46114117 37 - 69331447 I e otoGar3.GL873526 36313500 0 - 42659167 C e proCoq1.NW_012136747v1 5100391 3 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=112248.000000 s hg38.chr22_GL383582v2_alt 101649 10 + 162811 tttg--tatttt s panTro5.chr22 28881548 10 + 37823149 tttg--tatttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41156157 10 + 50109623 tttg--tatttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178968 10 + 4464012 tttg--tatttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106674734 10 - 115148730 tttg--tatttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84289203 10 + 92844088 tttg--tatttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634245 10 - 96509753 tttg--tatttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7126059 10 - 13098629 tttg--tatttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092840 10 - 4483953 tttg--tatttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723478 10 + 33263144 tttg--tatttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004202 10 - 14338769 tttg--tatttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 942157 10 + 1946073 ttag--tatttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1969758 12 - 2117846 tttgtatatttt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8879911 10 - 16357246 tttg--tatttt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1365940 10 - 1807191 tttg--tatttt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 46072 10 + 5963231 tttg--tatttt i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46114154 10 - 69331447 TTTG--CATTTT i canFam3.chr10 I 37 C 0 e mm10.chr15 82834059 0 + 104043685 C e dasNov3.JH570235 94382 0 + 1056298 C e otoGar3.GL873526 36313500 0 - 42659167 C e proCoq1.NW_012136747v1 5100391 3 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=1073256.000000 s hg38.chr22_GL383582v2_alt 101659 116 + 162811 tagtagagacggggtttcaccatattggccaggctggtctcgaactcctgaccta---------------------aggtgatccaccctcctcggcctcccaaagtgcggggattacaggcatgagccactgcacc s panTro5.chr22 28881558 116 + 37823149 tagtagagacggggtttcgccatattggccaggctggtctcgaactcctgaccta---------------------aggtgatccactctcctcggcctcccaaagtgctgagattacaggcatgagccactgcacc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41156167 116 + 50109623 tagtagagacggggtttcgccatattggccaggctggtctcgaactcctgaccta---------------------aggtgatccaccctcctcggcctcccaaagtgctgagattacaggcatgagccactgcacc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3178978 116 + 4464012 tagtagagacggggtttcgccatattggccaggctggtctcgaactcctgaccta---------------------aggtgatccaccctccttggcctcccaaagtgctgggattacaggcatgagccactgcacc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106674744 116 - 115148730 tagtagagatggggttttgccatgttggccaagctggtctcgaactcctgacctc---------------------aggtgatccaccctcctcggcctcccaaagtgctgggattacaggcatgagccactgcacc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84289213 116 + 92844088 cagtagagacagggttttgccatattggctaggctggtctcgaactcctgacctc---------------------aggtgatccaccctcctcggccttccaaagtgctaggattacaggcatgagccatcacacc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634255 116 - 96509753 cagtagagacagggttttgccatattggctaggctggtctcgaactcctgacctc---------------------aggtgatccaccctcctcggccttccaaagtgctaggattacaggcatgagccatcacacc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7126069 116 - 13098629 cagtagagacagggttttgccatattggctaggctggtctcgaactcctgacctc---------------------aggtgatccaccctcctcggccttccaaagtgctaggattacaggcatgagccatcacacc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092850 116 - 4483953 tagtagagacagggttttgccatattggctaggctggtctcgaactcctgacctc---------------------acgtgatccaccatcctcggcctcccaaagtgctaggattacaggcatgagccatcacacc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723488 116 + 33263144 tagtagagacagggttttgccatattggctaggctggtctcgaactcctgacctc---------------------aggtgatccaccctcctcggcctcccaaagtgctaggattacaggcatgagccatcacacc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004212 116 - 14338769 tagtagagacagggttttgccatattggctaggctggtctcgaactcctgacctc---------------------aggtgatccaccctcctcggcctcccaaagtgctaggattacaggcatgagccatcacacc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 942167 116 + 1946073 tagtagaaacagggttttgccatattggctaggctggtctcgaactcctgacctc---------------------aggtgatccaccctccttggcctcccaaagtgctaggattacaggcatgagccatcacacc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1969770 134 - 2117846 cagtagagacaggattttgccatgtcggccaggctggtcttgaactcctgacctc---caggagttcgagtgatccaggtgacccactctcctcgacctcccaaagtgctgagattataggcatgagccactgtgct i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8879921 124 - 16357246 cagtagagacagggttttg-catatttgccaggctggtcttgaactcctgacctc---caggagtttgagtgat---------ccactctccttgacctcccaaagtgctgagattataggcatgagccactgtgcc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1365950 137 - 1807191 cagtagagacagggtttcgccatgttggccaggccggtctcgaactcctgacctccatcaggagttcgagtgatccaggtgatccactctccttgacgtcccaaagtgctgagattacaggcatgagccactgtgtc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 46082 120 + 5963231 cagtagagacagggtttcgccatgttggccaggctggtctcgaactcctgacctc---caggagttcgagtgatccaggcgatccactctccttgaccttccaaagtgc--------------tgagccactgtgcc i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82834059 0 + 104043685 C e dasNov3.JH570235 94382 0 + 1056298 C e canFam3.chr10 46114164 0 - 69331447 C e otoGar3.GL873526 36313500 0 - 42659167 C e proCoq1.NW_012136747v1 5100391 3 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=54198.000000 s hg38.chr22_GL383582v2_alt 101775 5 + 162811 cagcc s panTro5.chr22 28881674 5 + 37823149 cagcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41156283 5 + 50109623 cagcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3179094 5 + 4464012 cagcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106674860 5 - 115148730 cagcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84289329 5 + 92844088 cagcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634371 5 - 96509753 cagcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7126185 5 - 13098629 cagcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092966 5 - 4483953 cagcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723604 5 + 33263144 cagcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004328 5 - 14338769 cagcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 942283 5 + 1946073 cagcc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1969904 5 - 2117846 cggcc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8880045 5 - 16357246 cggcc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1366087 5 - 1807191 tggcc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 46202 5 + 5963231 cggcc i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 94382 5 + 1056298 CAGTT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82834059 0 + 104043685 C e canFam3.chr10 46114164 0 - 69331447 C e otoGar3.GL873526 36313500 0 - 42659167 C e proCoq1.NW_012136747v1 5100391 3 - 6317780 I e micMur3.chr7 5735091 864 + 108171978 I a score=45045.000000 s hg38.chr22_GL383582v2_alt 101780 3 + 162811 TGC s panTro5.chr22 28881679 3 + 37823149 TGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41156288 3 + 50109623 TGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3179099 3 + 4464012 tgc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106674865 3 - 115148730 TAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84289334 3 + 92844088 tgc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634376 3 - 96509753 TGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7126190 3 - 13098629 tgc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092971 3 - 4483953 tgc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723609 3 + 33263144 TGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004333 3 - 14338769 TGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 942288 3 + 1946073 tgc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1969909 3 - 2117846 TGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8880050 3 - 16357246 TGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1366092 3 - 1807191 tgt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 46207 3 + 5963231 TGC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5100394 3 - 6317780 tgc i proCoq1.NW_012136747v1 I 3 C 0 s otoGar3.GL873526 36313500 3 - 42659167 TGC i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 94387 3 + 1056298 TGC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82834059 0 + 104043685 C e canFam3.chr10 46114164 0 - 69331447 C e micMur3.chr7 5735091 864 + 108171978 I a score=212671.000000 s hg38.chr22_GL383582v2_alt 101783 14 + 162811 ATTTTATCTTATCT s panTro5.chr22 28881682 14 + 37823149 ATTTTATCTTATCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41156291 14 + 50109623 ATTTTATCTTATCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3179102 14 + 4464012 attttatcttatct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106674868 14 - 115148730 ATTTTATCTTATCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84289337 14 + 92844088 attttatcttatct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634379 14 - 96509753 ATTTTATCTTATCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7126193 14 - 13098629 attttatcttatct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092974 14 - 4483953 attttatcttatct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723612 14 + 33263144 ATTTTATCTTATCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004336 14 - 14338769 ATTTTATCTTGTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 942291 14 + 1946073 attttaccttatct i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1969912 14 - 2117846 ATTTTATCTTATCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8880053 14 - 16357246 ATTTTATCTTATCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1366095 11 - 1807191 a---tatcttatct i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 46210 14 + 5963231 ATTTTATCTTATCT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5735955 14 + 108171978 ATTTTAGcttatcc i micMur3.chr7 I 864 C 0 s proCoq1.NW_012136747v1 5100397 14 - 6317780 attttatcttatcc i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36313503 14 - 42659167 ATTTTCTCTTACCC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46114164 9 - 69331447 -----ATCTTACCT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 94390 14 + 1056298 CTGTTATCTTATCT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82834059 0 + 104043685 C a score=4479763.000000 s hg38.chr22_GL383582v2_alt 101797 311 + 162811 ACAGTTATATATACTCCATTAAAATAATCCTAATCAGAGGGTTTCTTT--TATAGCCCCAAAAGAAAAT------TGC--CACTGTGCTGAAAACCTTATATA-TTTTGTCTAACGGAG--TTTTTCCTATG------TT------AAAAGGAGCTTGTGCCCTTTAAGAAATTAGAAAGGAAGGGCAC-AGAGTGCT-AGAGTCCAGGACTAGGTATAAGCCATT-GATTAGCACTTTTCCTCTGAATAAAAGCAGAGA-ACCTGAGAAAAGGCTGAACCCAGCAGGAGTAGGAGACCT---GCGGC--AGCCCTGTGATGAAGA-AAGAGAAGAGCTTTTTCTC- s panTro5.chr22 28881696 309 + 37823149 A--GTTATATATACTCCATTAAAATAATCCTAATCAGAGGGTTTCTTT--TATAGCCCCAAAAGAAAAT------TGC--AACTGTGCTGAAAACCTTATATA-TTTTGTCTAACGGAG--TTTTTCCTATG------TT------AAAAGGAGCTTGTGCCCTTTAAGAAATTAGAAAGGAAGGGCAC-AGAGTGCT-AGAGTCCAGGACTAGGTATAAGCCATT-GATTAGCACTTTTCCTCTGAATAAAAGCAGAGA-ACCTGAGAAAAGGCTGAACCCAGCAGGAGTAGGAGACCT---GCGGC--AGCCCTGTGATGAAGA-AAGAGAAGAGCTTTTTCTC- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41156305 309 + 50109623 A--GTTATATATACTCCATTAAAATAATCCTAATCAGAGGGTTTCTTT--TATAGCCCCAAAAGAAAAT------TGC--AACTGTGCTGAAAACCTTATATA-TTTTGTCTAACGGAG--TTTTTCCTATG------TT------AAAAGGAGCTTGTGCCCTTTAAGAAATTAGAAAGGAAGGGCAC-AGAGTGCT-AGAGTCCAGGACTAGGTATAAGCCATT-GATTAGCACTTTTCCTCTGAATAAAAGCAGAGA-ACCTGAGAAAAGGCTGAACCCAGCAGGAGTAGGAGACCT---GCGGC--AGCCCTGTGATGAAGA-AAGAGAAGAGCTTTTTCTC- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3179116 309 + 4464012 acagttatatatg--ccattaaaataatcctaatcagagggtttcttt--catagccCCAAAAGAAAAT------TGC--AACTGTGCTGAAAACCTTATATA-TTTTGTCTAACGGAG--TTTTTCCCATG------TT------AAAAGGAGCTTGTGCCCTTTAAGAAATTAGAAAGGAAGGGCAC-AGAGTGCT-AGAGTCCAGGACTAGGTATAAGCCATT-GATTAGCACTTTTCCTCTGAATAAAAGCAGAGA-ACCTGAGAAAAGGCTGAACCCAGCAGGAGTACGAGACCT---GCGGC--AGCCCTGTGATGAAGA-AAGAGAAGAGCTTTTTCTC- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106674882 306 - 115148730 ACAGTTATATAGATAATAT----ATAATCCTAATCAGAGGGTTTCTTT--TATAGCCCCAAAAGAAAAT------TGC--AACTGTGCTGAAAACCTTATATA-TTTTGTCTAACGGAG--TTTTTCC-ATA------TT------AAAAGGAGCTTGTGCCCTTTAAGAAATTAGAAAGGAAGGGCAC-AGAGTGCT-AGAGTCCAGGACAAGGTATAAGCCATT-GATTAGCACTTTTCCTCTGAATAAAAGCAGAGA-ACCTGAGAAAAGGCTGAACCCAGCAGGAGTAGGAGACCT---GCGGC--AGCCCTGTGATGAAGA-AAGAGAAGAGTTTTTTCTC- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84289351 304 + 92844088 acagttatatacactccactaaaataatcctaatcaga-agtttcttt--tatagccCCAAAAGAAAAC------TGC--AACTGTGTTGAAAACCTTATACA-TTTTGTCTAAC-GAG--TTTTTCC-ATA------TT------AAAAGGAGCTTGTGCCCTTTAAGAAGTTAGAAAGGAAGGGCAC-AGAGTGCT-GGAGTCCAGGACTAGGTATAAGCCATT-AATTAGCACTTTTCCTCTGAATAAAAGCAGAGA-ACCTGAGAAAAGGCTGAACCCAGCAGGAGTAGGAGCCCT---GCAGC--AGCCCTGTGACA-----AAGAGAAGAGCTTTTTCTC- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634393 309 - 96509753 ACAGTTATATACACTCCACTAAAATAATCCTAATCAGA-AGTTTCTTT--TATAGCCCCAAAAGAAAAC------TGC--AACTGTGTTGAAAACCTTATACA-TTTTGTCTAAC-GAG--TTTTTCC-ATA------TT------AAAAGGAGCTTGTGCCCTTTAAGAAGTTAGAAAGGAAGGGCAC-AGAGTGCT-AGAGTCCAGGACTAGGTATAAGCCATT-AATTAGCACTTTTCCTCTGAATAGAAGCAGAGA-ACCTGAGAAAAGGCTGAACCCAGCAGGAGTAGGAGCCCT---GCAGC--AGCCCTGTGACAAAGAGAAGAGAAGAGCTTTTTCTC- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7126207 309 - 13098629 acagttatatacactccactaaaataatcctaatcaga-agtttcttt--tatagccCCAAAAGAAAAC------TGC--AACTGTGTTGAAAACCTTATACA-TTTTGTCTAAC-GAG--TTTTTCC-ATA------TT------AAAAGGAGCTTGTGCCCTTTAAGAAGTTAGAAAGGAAGGGCAC-AGAGTGCT-AGAGTCCAGGACTAGGTATAAGCCATT-AATTAGCACTTTTCCTCTGAATAAAAGCAGAGA-ACCTGAGAAAAGGCTGAACCCAGCAGGAGTAGGAGCCCT---GCAGC--AGCCCTGTGACAAAGAGAAGAGAAGAGCTTTTTCTC- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4092988 312 - 4483953 acagttatatacactccactaaaataatcctaatcaga-agtttcttt--tatagccCCAAAAGAAAAC------TGC--AACTGTATTGAAAACCTTATACA-TTTTGTCTAAC-GAG--TTTTTCC-ATA------TT------AAAAGGAGCTTGTGCCCTTTAAGAAGTTAGAAAGGAAGGGCAC-AGAGTGCT-AGAGTCCAGGACTAGGTATAAGCCATT-AATTAGCACTTTTCCTCTGAATAAAAGCAGAGA-ACCTGAGAAAAGGCCGAACCCAGCAGGAGTAGGAGCCCTGCAGCAGC--AGCCCTGTGACAAAGAGAAGAGAAGAGCTTTTTCTC- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723626 308 + 33263144 ACAGTTATATACACTCCACTAAAATAATCCTAATCAGA-ACTTTCTTT--TATAGCCCCAAAAGAAAAC------TGC--AACTGTGTTGAAAACCTTATACA-TTTTGTCTAAC-GAG--TTTTTCC-ATA------TT------AAAAGGAGCTTGTGCCCTTTAAGAAGTTAGAAAGGAAGGGCAC-AGAGTGCT-AGAGTCCAGGACTAGGTATAAACCATT-AATTAGCACTTTTCCTCTGAATAAAAGCAGAGA-ACCTGAGAAAAGGCTGAACCCAGCAGGAGCAGGAGCCCT---GCAGC--AGCCCTGTGACAAAGA-AAGAGAAGAGCTTTTTCTC- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004350 309 - 14338769 ACAGTTATATACACTCCACTAAAATAATCCTAATCAGA-AGTTTCTTT--TATAGCCCCAAAAGAAAAC------TGC--AACTGTGTTGAAAACCTTATACA-TTTTGTCTAAC-GAG--TTTTTCC-ATA------TT------AAAAGGAGCTTGTGCCCTTTAAGAAGTTAGAAAGGAAGGGCAC-AGAGTGCT-AGAGTCCAGGACTAGGTATAAGCCATT-AATTAGCACTTTTCCTCTGAATGAAAGCAGAGA-ATCTGAGAAAAGGCTGAACCCAGCAGGAGTAGGAGCCCT---GCAGC--AGCCCTGTGACAAAGAGAAGAGAAGAGCTTTTTCTC- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 942305 308 + 1946073 acagttatatacactccattaaaataatcctaatcaga-agtttcttt--tatagccCCAAAAGAAAAC------TGC--AACTGTGTTGAAAACCTTATACA-TTTTGTCTAAC-GAG--TTTTTCC-ATA------TT------AAAAGGAGCTTGTGCCCTTTAAGAAGTTAGAAAGGAAGGGCAC-AGAGTGCT-AGAGTCCAGTACTAGGAATAAGCCATT-AATTAGCACTTTTCCTCTGAATAAAAGCAGAGA-ACCTGAGAAAAGGCTGAACCCAGCAGGAGTAGGAGCCCT---GCAGC--AGCCCTGTGACAAAGA-AAGAGAAGAGCTTTTTCTG- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1969926 306 - 2117846 GCAGTTATACATACTCCGCTAAAATAATCCTAATCAAAGCGTTTC-TT--TATAGCCCCAGAAGAAAAT------TGC--AACTGTGCTGAAAACTATATATA-TTTTGTCTAAGGCAG--TTTTTCC-ATA------TT------AAAAGGGGATTGTGCCCTTTAAGAAG---GAAAAAAAGGGCAC-AGAATGCT-AGAGTCCAGGACTACGTATAAGCCATT-AATTAGCACTTTTCCTTTGAATAAAAGCAGAGA-ACCTGAGAAAAGGCTGAACCCAGCAGGAGTAGGAGTCCT---GTGGT--AGCTGTGTGATGAAGA-AAGAGAAGAGCTTTTTCTC- i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8880067 309 - 16357246 GCAGCTATACATACTCCATTAAAATAATCCTAATCAAAGGGTTTCTTT--TATAGCCCCAGAAG-AAAT------TCC--AACTGTGCTGAAAACCATATATA-TTTTGTCTAAGGCAG--TTTTTCC-ATA------TT------AAAAGGGGCTTGTGCCCTTTAAGAAGTTAGAAAGAAAGGGCAC-AGAATGCT-AGGGTCCAGGACTAGGTATAAGCCATT-AATTAGCACTTTTCCTCTGAATAAAAGCAGAGA-ACTTGAGAAAAGGCTGAACCCAGCAGGAGTAGGAGCTCT---GTGGT--AGCTGTGTGACAAAGA-AAGAGAAGAGCTTTTTCTC- i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1366106 312 - 1807191 gcagttatacatactccattaaaataatcctaatcaaagggtttctttcatatggccCCAGAAGAAAAT------TGC--AGCTGTGCTGAAAACCATATATA-TTTTTTCTAAGGCAG--TTTTTTC-ATA------TT------AAAAGGAGCTTGTGCCCTTTAAGAAGTTAGAAAAAAAGGGCAC-AGAATGCT-AGAGCCCAGGACTAGGTATAAGCCATT-GATTAGCACTTTTCCTCTGAATAAAAGCAGAGA-ACCTGAGAAAAGGCTGAACTCAGCAGGAGTAGGAACCCT---GTGGT--AGCTGTGTGACGAAGA-AAGAGAAGAGCTTTTTCTC- i cebCap1.NW_016107750v1 C 0 I 1 s aotNan1.NW_018512383v1 46224 304 + 5963231 GCAGTTATACATATTCCATTAAAATAATCCTAATCAAAGGGTTTCTTT--TATAGT-------GAAAAC------TGC--AACTGtgctgaaagccatatata-ttttgtctaaggcaG--TTTTTCC-ATA------TT------AAAAGGGGCTTGTGCCCTTTAAGAAGTTAGAAAAAAAGGGCAC-AGAATGCTAAGAGTCCAGGACTAGGTATAAGCCATT-AATTAGCACTTTTCCTCTGAATAAAAGCAGAGA-ACCTGAGAAAAGGCTGAACCTAGCAGGAGTAGGAGCCCT---GTGGT--AGCTGTGTGACAAAGA-AAGAGAAGAGATTTTTCTC- i aotNan1.NW_018512383v1 C 0 I 1 s micMur3.chr7 5735969 310 + 108171978 acaggtatatacactccattaaaataattctaatctgagggtttcttt--tatagccCCAGAAGAAAAC----TGTGC--AACTTTGCTGAAAACATTATATA-TTTTGTCTAAGGAAG--TTTGTCC-ATG------CTAAGAAGAAAAGGGACTTGTACTCTTTAAGA----AGAAAAGAAGAGTAG-AGAGTGCT-AGAGTCCAGGACCAGGTTTAAGCCAGT-AATTAGCACTTT---TCTGAGTAAGAGCAGAGA-ACCTGAGAAAAGGCTGAACCCAGCAGGAGCCGGAGCCCT---GCAGC--AGCC-TGTGAAGAAGA-AAGAGAACAGCTTTTTCTC- i micMur3.chr7 C 0 I 36 s proCoq1.NW_012136747v1 5100411 313 - 6317780 acaggcatatacactccattaaaataattctaatctgagggtttcttt--tacagccCCAGAAGAAAAC----TGTGC--AACTTTGCTGAAAACATTATGTA-TTTTGTCTAAGGAAG--TTTGTCC-ATG------CTAAGAAGAAAAGGGACTTGTGCCCTTTAAGA----AGAAAGGAAGAGTAC-AGAGTGCT-AGAGTCCAGGACCAGGTTTAAGCCAGT-ATTTAGCATTTTTCCTCTGAATAAGAGAAGAGA-ACCTGAGAAAAGGCTGAACCCAGCAGGAGCCTGAGCCCT---GAAGC--AGCC-TGTGAAGAAGA-AACAGAACAGCTTTTTTTC- i proCoq1.NW_012136747v1 C 0 I 36 s otoGar3.GL873526 36313517 281 - 42659167 ACAGGTATACACACTCCATTAAGATAATTCTCATCTTAGGGTTTCTTT--CATAGCCCCAGTAGAAAAC---------------TTGCTGAAAACATTATATATTTTTATCTAAGGAAG--CTTTTCC-ATG------TTAAGAAGAAAAAGGACTTGTGTTCTTTAAGAAGTCAGAAAGGAAGAATAA-AGAGTGCT-AAAGTCCAGGGCCAGGTTTAAGTCAGT-AATTAGCACTTTTCCTCTGAAAGAGAGGAGAGACACCTGA------GCTGAGCCCAGCAGGAGGAAGAGCCCT---GTGG---------------------------CAGCTGTTTCTC- i otoGar3.GL873526 C 0 I 1 s mm10.chr15 82834059 293 + 104043685 ACAGGTATATATACTTTGCTAAAATAATTTTCATCAGAGGGTTTCTTT--TTCAGTCCAAGAAAAAAAAAAATCACAC--AACTTGCCTGGAA-------ATG-TTTTCTCTTAGCAAGTTTTTTTCC-ATA------TT---AAGAAAAGGGATTTATG----TTAAGAGGTTAGAAAGGAGGGGTTC-TAAGTGCT-GAG--CCTGGACTAGGCTTAAGGAAGTAAATTAGCACCTTTCCTCTGCA-----------A-ATCTGAGAAAAGGCTGAACCCAGCAGGAGCA-GAAACCT---GCAGC--AGCCCAGTGATG-----GGGAGGGCAGCACCTTCAG- i mm10.chr15 C 0 C 0 s canFam3.chr10 46114173 314 - 69331447 ACAAGCACATATATCCCATTAAAATAATTCTAATCAGAGGGTTTCTTT--TATAGTCAGAGAAGAAAGC------TGT--GACTTTGAT-AAAACATTATATA-TTTTGTTGAGGGGAA--TTTTTAC-ACAAATCTTTTAGAGAGAAAAGATATTTGTGCCCTTTAAGGAGTTAGAAAGGAGGG----------GCT-TAGGTCTGGGAGGTTTTTTAAAGCAGT-AATTAGCACGTTTGCTCTCAACAGCATCTGAGA-ACCTGAGAAAAGGCTGCACCCAGCAGGAGCAGGAGCCCC--AGCAGCCTGGCCCAGCGA-GAAGA-AAGAGAATAGTCTTTTCTT- i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 94404 313 + 1056298 ACTGGTATCTATACTCTATTAATATAATTCTACTCAGAGGATTTCTTT--TATGGCTCGAGAAGAGAGT------TGCAGAACTTTGTTGAAAAACAT-CATA-TTTTGTCTGGGAGAG--TTTTACA-TGG------TG------GAATGAAATTTGCACACTTTAAAAAATTATAAAGGAGGGGCTCAAGAGTGCC-AGTTTCCAGAATGAGTATTAAGGCTGC-AATTAGCACTTTTACTTTGAATAGCAACTAGGA-ACCAGAGAAAAGGCTGAAATCAGCAGGAGTAGGAGCCCC---GCAGC--GGCCCTGTGACCAAGA-AAGAGGACAGGTTTTCCTTT i dasNov3.JH570235 C 0 C 0 a score=336851.000000 s hg38.chr22_GL383582v2_alt 102108 27 + 162811 AAGTACAGGGAGAG--AAATA---CTT----ACATA s panTro5.chr22 28882005 27 + 37823149 AAGTACAGGGAGAG--AAATA---CTT----ACATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41156614 27 + 50109623 AAGTACAGGGAGAG--AAATA---CTT----ACATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3179425 31 + 4464012 AAGTACAGGGAGAG--AAATA---CTTACAGACATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106675188 31 - 115148730 AAGTACAGGGAGAG--AAATA---CTTATAGACATA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84289655 31 + 92844088 AAGTACAGGGAGAG--AAATG---CTTACAGACATA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634702 31 - 96509753 AAGTACAGGGAGAG--AAATG---CTTACAGACATA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7126516 31 - 13098629 AAGTACAGGGAGAG--AAATG---CTTACAGACATA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4093300 31 - 4483953 AAGTACAGGGAGAG--AAATG---CTTACAGACATA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723934 31 + 33263144 AAGTACAGGGAGAG--AAATG---CTTACAGACATA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004659 31 - 14338769 AAGTACAGGGAGAG--AAATG---CTTACAGACATA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 942613 31 + 1946073 AAGTACAGGGACAG--AAATG---CTTACAGACATA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1970233 31 - 2117846 AAGTACCCGGAGAG--AAATG---CTTATAGACATA i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8880377 31 - 16357246 AGGTACAGGGAAAG--AAATG---CTTATAGACATA i saiBol1.JH378157 I 1 C 0 s cebCap1.NW_016107750v1 1366419 31 - 1807191 ACATACAGGGAGAG--AAATG---CTTATAGACAGA i cebCap1.NW_016107750v1 I 1 C 0 s aotNan1.NW_018512383v1 46529 31 + 5963231 AAGTACAGGGAGAG--AAATG---CTTATAGACACA i aotNan1.NW_018512383v1 I 1 C 0 s otoGar3.GL873526 36313799 27 - 42659167 AAGTACAGAAAGAT--AAATG---CTTATAGA---- i otoGar3.GL873526 I 1 I 1 s mm10.chr15 82834352 28 + 104043685 AAGTGT------AG--AAGTGTGTCTTATAGACAGA i mm10.chr15 C 0 C 0 s canFam3.chr10 46114488 29 - 69331447 AAGTATA--GAGAG--ACATG---CTTATGGACAGA i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 94717 29 + 1056298 AAGTATAAAGAGAAATAAATG---CTTAGAGA---- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5100724 36 - 6317780 I e micMur3.chr7 5736279 36 + 108171978 I a score=6790780.000000 s hg38.chr22_GL383582v2_alt 102135 415 + 162811 ----GTTTGAAAC-----------ACTGAAATTGAAGTTGCACAAGGTCTTGCACTAGCTTATTTTTATTTTACCCTTTGCTCAAACAGTGGATTAGCTTA-TAAAGAGAAATGATTACA-TTTTGTGCTTTCTGAATCTAAAAAGGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCTTGGTGTAAG-CTG-CTTCTCTCCATGGCTCATCCTACCCAGGAGTTGGGTCTGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGT-GCAGAAACGAC--AAACCTG----CTGC--CACAATAGGACTCCCTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAGCGGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTCT s panTro5.chr22 28882032 414 + 37823149 ----GTTTGAAAC-----------ACTGAAATTGAAGTTGCACAAGATCTTGCACTAGCTTATTTTTATTTTACCCTTTGCTCAAACAGTGGATTAGCTTA-TAAAGAGAAATGATTACA-TTTTGTGCTTTCTGAATCTAAAA-GGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCTTGGTGTAAG-CTG-CTTCTCTCCATGGCTCATCCTACCCAGGAGTTGGGTCTGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGT-GCAGAAACGAC--AAACCTG----CTGC--CACAATAGGACTCCCTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAGCGGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41156641 415 + 50109623 ----GTTTGAAAC-----------ACTGAAATTGAAGTTGCACAAGATCTTGCACTAGCTTATTTTTATTTTACCCTTTGCTCAAACAGTGGATTAGCTTA-TAAAGAGAAATGATTACA-TTTTGTGCTTTCTGAATCTAAAAAGGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCTTGGTGTAAG-CTG-CTTCTCTCCATGGCTCATCCTACCCAGGAGTTGGGTCAGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGT-GCAGAAACGAC--AAACCTG----CTGC--CACAATAGGACTCCCTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAGTGGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3179456 414 + 4464012 ----GTTTGAAAC-----------ACTGAAATTGAAGTTGCACAAGATCTTGCACTAGCTTATTTTTATTTTACCCTTTGCTCAAACAGTGGATTAGCTTA-TAAAGAGAAATGATTACA-TTTTGTGCTTTCTGAATCTAAAA-GGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCTTGGTGTAAG-CGG-CTTCTTTCCATGGCTCATCCTACCCAGGAGTTGGGTCTGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGT-GCAGAAACGAC--AAACCTG----CTGC--CACAATAGGACTCCCTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAGTGGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106675219 415 - 115148730 ----GTTTAAAAC-----------ACTGAAACTGAAGTTGCACAAGATCTTGCACTAGCTTATTTTTATTTTACCCTTTGCTCAAACAGTGGATTAGCTTA-TAAACAGAAATGATTACA-TTTTGTGCTTTCTGAATCTAAGAAGGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCTTGGTGTAAG-CTG-CTTCTCTCCATGGCTCATCCTACCCAGGAGTTGGGTCTGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGC-GCGGAAACGAC--AAACCTG----CTGC--CACAATAGGACTCCCTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAGCGGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84289686 413 + 92844088 ----GTTTAAAAC-----------ACTGAAATTGAAGTTGCACAAGATCTTGCACTAGTGTATTTTTATTTTACCCTTTGCT----CAGTGGATTAGCTTATTAAAGAGAAATGATTCCA-TTTTGTGTTTTCTGAATCTAAGAAGGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCTTGATGTAAG-CTG-CTTCTCTCCATGGCTCATCCTACCCAGGAGTTGGGTCTGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGCAGCAGAAACGAC--AAACCTG----CTGC--CACAATAGGACTCCCTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAACGGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87634733 413 - 96509753 ----GTTTAAAAC-----------ACTGAAATTGAAGTTGCACAAGATCTTGCACTAGCGTATTTTTATTTTACCCTTTGCT----CAGTGGATTAGCTTATTAAAGAGAAATGATTCCA-TTTTGTGTTTTCTGAATCTAAGAAGGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCTTGATGTAAG-CTG-CTTCTCTCCATGGCTCATCCTACCCAGGAGTTGGGTCTGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGCAGCAGAAACGAC--AAACCTG----CTGC--CACAATAGGACTCCCTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAACGGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7126547 413 - 13098629 ----GTTTAAAAC-----------ACTGAAATTGAAGTTGCACAAGATCTTGCACTAGCGTATTTTTATTTTACCCTTTGCT----CAGTGGATTAGCTTATTAAAGAGAAATGATTCCA-TTTTGTGTTTTCTGAATCTAAGAAGGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCTTGATGTAAG-CTG-CTTCTCTCCATGGCTCATCCTACCCAGGAGTTGGGTCTGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGCAGCAGAAACGAC--AAACCTG----CTGC--TACAATAGGACTCCCTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAACGGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4093331 412 - 4483953 ----GTTTAAAAC-----------ACTGAAATTGAAGTTGCACAAGATCTTGCACTAGCGTATTTTTATTTTACCCTTTGCT----CAGTGGATTAGCTTA-TAAAGAGAAATGATTCCA-TTTTGTGTTTTCTGAATCTAAGAAGGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCTTGATGTAAG-CTG-CTTCTCTCCATGGCTCATCCTACCCAGGAGTTGGGTCTGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGCAGCAGAAACGAC--AAACCTG----CTGC--CACAATAGGACTCCCTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAACGGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24723965 412 + 33263144 ----GTTTAAAAC-----------ACTGAAATTGAAGTTGCACAAGATCTTGCACTAGCTTATTTTTATTTTACCCTTTGCT----CAGTGGATTAACTTA-TAAAGAGAAATGATTCCA-TTTTGTGTTTTCTGAATCTAAGAAGGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCTTGATGTAAG-CTG-CTTCTCTCCATGGCTCATCCTACCCAGGAGTTGGGTCTGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGCAGCAGAAACGAC--AAACCTG----CTGC--CACAATAGGACTCCCTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAACGGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14004690 412 - 14338769 ----GTTTAAAAC-----------ACTGAAATTGAAGTTGCACAAGATCTTGCACTAGCGTATTTTTATTTTACCCTTTGCT----CAGTGGATTAGCTTA-TAAAGAGAAATGATTCCA-TTTTGTGTTTTCTGAATCTAAGAAGGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCTTGATGTAAG-CTG-CTTCTCTCCATGGCTCATCCTACCCAGGAGTTGGGTCTGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGCAGCAGAAACGAC--AAACCTG----CTGC--CACAATAGGACTCCCTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAACGGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 942644 412 + 1946073 ----GTTTAAAAC-----------ACTGAAATTGAAGTTGCACAAGATCTTGCACTAGCTTATTTTTGTTTTACCCTTTGCT----CAGTGGATTAGCTTG-TAAAGAGAAATGATTCCA-TTTTGTGCTTTCTGAATCTAAGAAGGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGCCTCTTGATGTAAG-CTG-CTTCTCTCCATGGCTCATCCTACCCAGGAGTTGGGTCTGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGCAGCAGAAACGAC--AAACCTG----CTGC--CACAATAGGACTCCCTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAACGGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1970264 410 - 2117846 ----GTTTAAAAC-----------ACTGAAATTTAAGTTGTACAAGATCTTGTACTAGCTTATTTTTATTTTACCCTTTGCTCAAACA---GATTAGCTTA-TAAAGAGAAATGATTACA-TTTTATGCTGTCTGAATCTGAGAAGGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCTTGGTGTAAG-CCG-CTTCTCTCCATGGCTCGTCCTACCCAGGAGTTGGGTCTGTGCTTCTAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCAGCCATACTGAAATGTTTACAGTTTCAGCAGCAGAAATGAC--AAACCTA----CTGC--CACAATAGGACTCCCTT---AAGATTTCAAATCTGTGAAGATCATACTGAAGCAGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8880408 412 - 16357246 ----GTTTAAAAC-----------ACTGAAATTTAAGTTGCACAAGATCTTGTACTAGCTTATTTTTATTTTACCCTTTGCTCAAACA---GATTCGCTTA-TAAAGAGAAATGATTACA-TTCTGTGCTTTCTGCATCTGAGAAGGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCTTGGTATAAG-CCA-CTTCTCGCCATGGCTCATCCTACCCAGGAGTTGGGTCTGTGCTTCTAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGCAGCAGAAACGAC---AACCTA----CTGC--CACAATAGGACTCCCTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAGCAGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1366450 413 - 1807191 ----GTTTAAAAC-----------ACTGAAATTTAAGTTGCACAAGATCTTGTACTAGCTTATTTTTATTTTACCCTTTGCTCAAACA---GATTAGCTTA-TAAAGAGAAATGATTACA-TTTTGTGCTTTCTGAATCTGAGAAGGCATCTTTTTAAAGAAATTACACTCCAGGGAAGTGACTCCTGGTGTAAG-CCG-CTTCTCTCCACGGCTCATCCTACCCAGGAGTTGGGTCTATGCTTCTAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGCAGCAGAAATGAC--AAACCTA----CTGC--CACAATAGGAATCCCTTAACAAGATTTCAAATCTGTGAATATCATACTGAAGCAGAAATCTCCAAAGCTGTTCCAAACACTTGGCTCTGGAG-------GTCTTTTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 46560 409 + 5963231 ----GTTTAAAAC-----------ACTGAAATTTAAGTTGTACAAGATCTTGTACTAGC---TTTTTATTTTACCCTTTGCTCAAACA---GATTAGCTTA-TAAAGAGAAATGATTACA-TTTTGTGCTTTCTGAATCTGAGAAGGCATCCTTTTAAAGAAATTACAAACCAGGGAAGTGACTCTTGGTGTAAG-CCA-CTTCTCTCCATGGCTCATCCTACCCAGGAGTTGGGTCTGTGCTTCTAGAAAGCAAATTAC--CGGAAGCTGCTTATTCA---------CAAGGCACCCATACTGAAATGTTTACAGTTTCAGCAGCAGAAATGAC--AAACCTA----ctgc--cacaataggactcccttaacaagatttcaaatctgtgaagat-atactgaagcagaaatctccaaagctgttccaaacacttggctctggag-------gtcttttt i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5736315 420 + 108171978 ----GTTTAAAAC-----------ATTGAAATTTAAGTTGCACAAGATCATGTACTGGCTTATTTTTATTTTACCCTTTGCTCAAACAGTGGATTAGCTTA-TAAAGAGAAATGATTACA-ATTTGTACTTTCTGAATCTAAAAAGGCATCTTTTTAAAGAAATTACTCTCCCGGGAAGTGACTCTTGGTATAAG-CTG-CTTCTCTCCATGGCTCATCCTACTCAGGAGTTGGGTCTGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------CGAGGCACCCATACTGAAATGTTTATAGTTTCAGCAGCAGAAACGAC--AAACCTGCTGTCTGC--CACAATAGGATTCCTTTAACAAGATTTCAAATCTGTGAAGATCATACTGAAATGGAAATCTTCAAAGCTGTTCCAAATACTTGGCTGTGGAG-------GTCTTTCT i micMur3.chr7 I 36 I 173 s proCoq1.NW_012136747v1 5100760 416 - 6317780 ----GTTTAAAAC-----------ATTGAAATTTAAGTTGCACAAGATCATGTACTGGCTTATTTTTATTTTACCCTTTGCTCAAACAGTGGATTAGCTTA-TAAAGAGAAATGATTACA-ATTTATGCTTTCTGAATCTAAAAAGGCATCTTTTTAAAGAAATTACCCTCCCGGGAAGTGACTCTTGATATAAG-CTG-CTTCTCTCCATGGCTCATCTCACCCAGGAGTTGGGTCTATGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCA---------TGAGGCACCCATACTGAAATGTTTACAGTTTCAGCAGCAGAAATGAC--AAACCTG----CTGC--CACAATAGGATTCCTTTAACAAGATTTCAAATCTGTGAAGATAATACTGAAACGGAAATCTTCAAAGCTGTTCCAAATACTTGGCTGTGGAG-------GTCTTTCT i proCoq1.NW_012136747v1 I 36 I 164 s otoGar3.GL873526 36313827 406 - 42659167 ----AGTTTAAAC-----------ACTGAAGTTTAAGTAGCACAAAATCATGTACTGGCATATTTTTATTTTACCCTTTGCTTAAACAGTGGATTAGCTTA-TAGAGAGAAATT-------ATTTGGGCCTTCTGAATCTAAAAAAGCAGCTTTTTAAAGAAATTACCCTCCAGGGAAGTGACTCTTGGTATAAG-CTG-CTTCTCGCCATGGCTTACCCCATCTAGGAGTTGGGTCTGTGCTTCCAGAAAGCCAATTAC--TGGAAGCTGCTTATTCACGAGGTGTTCGAGGTGTTCGTATGGAAATGTTTACAGTTTC-----TAGAAACGAC--AAACCTG----CTGC--CACAAAAAGATTCCTTTAACAAGATTTCAAATCTGTGAAGACCCTACCAGAACAGAAATCTCCACAGTTGTTTCCAACACTTGGCTGTGGAA--------------- i otoGar3.GL873526 I 1 C 0 s mm10.chr15 82834380 357 + 104043685 ----GCTTAAAAC-----------CTTGAATTCTAAGTTGCA------------------TATTTTTATTTTACCAATTG-TCAAACAGTATACTAGCTGG--ATAAAAGAATGGTTACA-TTTTGTGTTTTGTAAAGCAAGCAGGCCATC-TTTAACTGAAATCACACG--AGGGAAGTGACTCTTTATAGCA--CTG-CTTCTCTCTAGGGCTCAGACCA-------------TCTGTG--------AAACCAAATACAAAAGAAACTGCTTATCCA---------TTAGCTACCCA-AATAAAATCTCT---------------GATTTAAC--ATAGTAT----CTGC--CATAATTAGACACATCTAATAAGATTTCTAACCAGTAAAGATACTACTAAAACACCAATCTCCAAAAATGGTCCTAACCTTCTGCACTAAGA-------ACCTTTAT i mm10.chr15 C 0 C 0 s canFam3.chr10 46114517 400 - 69331447 ----GTTGGAAATTAAAGTTGGAAACTGAAATTAAAGTTGCACAAGACTGTGTACTAGCTTAATTTTATTTTCCCCTTTGCTCAAACAGTGGATTGGATTA-TAAGGAGAAATGATTATC-TTTTGTGTTT---------AGAAAGGCATCTTTCTAAAGAAATTGCCTGCCAGGAAAGTGACTCTCTGTATAATCCTC-CTCCTCTCCACAGCTCATCC----CAGGAGTTGGGTCTGGGCTTCCAGAAAGCCAGTTAT--GGGGAGCTGCTCATTCA---------CAAGATGCTCCCA---------------TTTCAGTGGCAGAGATGAT--AAATGTG----CTGCCACACAGCAGGCCTCCTTTAAC-AGATCTCAAATCTGCGCAATTTACCCTGGAACTTCCATTTCTGCAGAAG-TCCAAACTCCTCGCTTTGGAG-------GCCTTCTT i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 94746 423 + 1056298 AAGGTCTTAAAAC-----------------ATTTAAGTTGCACAAGACTGCATACTAATTTATTTTTATTTTACCCTCTGCTGGAAGAGTAGATTGGCTTA-TAAAGAGAAATGATTACCTTTTTGTGCTTTTTGAATCTAAAAAGGCATCTTTT--AACAAATTACCCACTAGGGAAGTGACCCTTGATATATA-CCACCTTCTCTTCATGACCCATCCTACCCATGAGTTGTGCCTATGCTTCTGGGAAGCTAATTAC--TAGAAGCTACACAATCC---------CACAGCACTCCTATTTAACTATTTACTACTCCAGGAACAGAAATGACATAAGCTTG----TCAC--CACAACAGACCTCCTTCAACAAGATTTCAAATCTGTGAAGATTATAATGGAACTTAAATCTCTAAAGACTCTCCAACCATTTGGCCTTGGGGTTTGTTTGTTTTTTC i dasNov3.JH570235 C 0 C 0 a score=1409061.000000 s hg38.chr22_GL383582v2_alt 102550 139 + 162811 ----CATTTTTACT-C-CTTTCTTCCTACTTGCATTCATA-TTACCTTCCTCTTTC-GCACCCGGAGCCACTGCCATC-TCACCAACGCTCTCGCCTGTCCATCTTCTCAA-------------------ACAGGTTGAGGTATTGTCAGGCAAAGCCACCCTATTC s panTro5.chr22 28882446 139 + 37823149 ----CATTTTTACT-C-CTTTCTTCCTACTTGCATTCATA-TTACCTTCCTCTTTC-GCACCCGGAGCCACTGCCATC-TCACCAACGCTCTCGCCTGTCCATCTTCTCAA-------------------ACAGGTTGAGGTATTGTCAGGCAAAGCCACCCTATTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157056 139 + 50109623 ----CATTTTTACT-C-CTTTCTTCCTACTTGCATTCATA-TTACCTTCCTCTTTC-GCACCCGGAGCCACTGCCATC-TCACCAACGCTCTCGCCTGTCCATCTTCTCAA-------------------ACAGGTTGAGGTATTGTCAGGCAAAGCCACCCTATTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3179870 139 + 4464012 ----CATTTTTACT-C-CTTTCTTCCTACTTGCATTCATA-TTACCTTCCTCTTTC-GCAGCTGGAGCCACTGCCATC-TCACCAACGCTCTCGCCTGTCCGTCTTCTCAA-------------------ACAGGTTGAGGTATTGTCAGGCAAAGCCACCCTATTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106675634 139 - 115148730 ----CATTTTTACT-C-CTCTCTTCCTACTTGCATTCATA-TTACCTTCCTCTTTC-ACACCCGGAGCCACTGCCATC-TCACCAACGCTCTCGCCTGTCCATCTTCTCAA-------------------ACAGGTTGAGGTATTGTCAGGCAAAGCCACCCTATTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84290099 138 + 92844088 ----CA--TTTACT-C-CTCTCTTCCTTCTTGCATTCATA-CTACCTTCCTCTTTTCGCATCCAGAGCCACTGCCATC-TCACCAACGCTCTCACCTGTCCATCTTTTCAG-------------------ACAGGTTGACGTATTGTCAGGCAAAGCCACCCTATTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87635146 138 - 96509753 ----CA--TTTACT-C-CTCTCTTCCTTCTTGCATTTGTA-CTACCTTCCTCTTTTCGCATCCAGAGCCACTGCCATC-TCACCAACGCTCTCACCTGTCCATCTTTTCAG-------------------ACAGGTTGACGTATTGTCAGGCAAAGCCACCCTATTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7126960 138 - 13098629 ----CA--TTTACT-C-CTCTCTTCCTTCTTGCATTCGTA-CTACCTTCCTCTTTTCGCATCCAGAGCCACTGCCATC-TCACCAACGCTCTCACCTGTCCATCTTTTCAG-------------------ACAGGTTGACGTATTGTCAGGCAAAGCCACCCTATTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4093743 138 - 4483953 ----CA--TTTACT-C-CTCTCTTCCTTCTTGCATTCGTA-CTACCTTCCTTTTTTCGCATCCAGAGCCACTGCCATC-TCACCAACGCTCTCACCTGTCCATCTTTTCAA-------------------ACAGGTTGACGTATTGTCAGGCAAAGCCATCCTATTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24724377 138 + 33263144 ----CA--TTTACT-C-TTCTCTTCCTTCTTGCATTCGTA-CTACCTTCCTCTTTTCGCATCCAGAGCCACTGCCATC-TCACCAACGCTCTCACCTGTCCATCTTTTCAA-------------------ACAGGTTGAGGTATTGTCAGGCAAAGCCACCCTATTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14005102 138 - 14338769 ----CA--TTTACT-C-CTCTCTTCCTTCTTGCATTCGTA-CTACCTTCCTCTTTTCGCATCCAGAGCCACTGCCATC-TCACCAACGCTCTCACCTGTCCATCTTTTCAA-------------------ACAGGTTGACGTATTGTCAGGCAAAGCCACCCTATTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943056 137 + 1946073 ----CA--TTTACT-C-CACTCTTCCTTCTTGCATTCGTA-CTACCTTCCTCTTTT-GCATCCAGAGCCACTGCCATC-TCATCAACGCTCTCACCTGCCCATCTTTTCAA-------------------ACAGGTTGAGGTATTGTCAGGCAAAGCCACCCTATTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1970674 133 - 2117846 ----CATTTTTACT-C-CTCTCTTCTTACTTGCATTCGCA-TTACCTTCCTCTTTC-CTGCCCAGATCCACTGCCCTC-TCACCAATGCTCTCATCTGTCCATGTTTTCAA-------------------ACAG------GTATTGTCAGGCAAAGCCACTCTATTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8880820 133 - 16357246 ----CATTTTTACT-C-CTCTCTTCCTACTTGTATTCATA-TTACTTTCCTCTTTC-CTGCCCAGATCCACTGCCCTC-TCACCAATGCTCTCATCTGTCCACATTCTCAA-------------------ACAG------GTATTGTCAGGCAAAGCCACTCTATTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1366863 133 - 1807191 ----CATTTTCACT-C-CTCTCTTCCTACTTGCATTCCTA-TTACCTTCCTCTTTC-CTGCCCAGATCCACTGCCATC-TCACCAACGCTCTCATCTGTCCATGTTCTCAA-------------------ACAG------GTATTGTCAGGAAAAGCCACTCTATTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 46969 131 + 5963231 ----catttttact-c---ctcttcctacttgcatttgta-ttaccttcctctttc-ctgcccagatccactgccatc-tcaccaatgctctCATCTGTCCATGTTCTCAA-------------------ACAG------GTATTGCCAGGCAAAGCCACTCTATTT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36314233 107 - 42659167 -------------------TTCTCTCTATTGGCATTT----CTAAGTTCCCCTTTC---------TTCCCCTTCTACT-TCACCAGGCTGCCCATCTGTCCATCTTCCCAA-------------------ACAGATTAAAGTCTTGTCAG--------ACTCTATTC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82834737 157 + 104043685 ------TTTTTACT-AACTCTCTGTGCACTTATATTTGCA-TTTAATTCACAATTTCTTGCTCAGGCCTCTGTCTGTC-TCCCAAGCACTCTCATCTACGTAAACTTTCAA-TTGAATAACTAAGACTTTGTAGATCAAAGTCCTATCAGGCAAAGCTGCTCTATCC i mm10.chr15 C 0 I 410 s canFam3.chr10 46114920 145 - 69331447 ----TATTCTTCCTGC-CTCTCTTCCCACATG-GTTTGTT-TTATC-----CTTTC-GTGCCCAGATCTACCTCCACC-TCGCCA--GTCCTCACTGGCTCATCTTCTCAA-CTGAACAACTAGTT----ACAAGTCATGGTCCTATCTG-CAAAGTCACTCTACTC i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 95169 158 + 1056298 CTCATATTTTTACTTC-CATTCTTCTTACTTGCATTTATATTTACGTTATCCTTTC-TTACCCAGATCTACTTCTGCCTTCACTAATA-------CTGTTTATCTCCTCAAACTGAACGACTGAGCATTTACAGGTCAAGGTCTTGTCAGACAAAGCCACTCTATTC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5101176 164 - 6317780 I e micMur3.chr7 5736735 173 + 108171978 I a score=990138.000000 s hg38.chr22_GL383582v2_alt 102689 79 + 162811 CTGGAAGT----GGCAAGTTTTTCAAAGGCAGGGGCAGCCTGA--CAGGACAGACACTGG--AGGC----------------TCAGGAAATAGCAGAGTCCCA s panTro5.chr22 28882585 95 + 37823149 CTGGAAGT----GGCAAGTTTTTCAAAGGCAGGGGCAGCCTGA--CAGGACAGACACTGG--AGGCCCTTAGTCCCAGTTACTCAGGAAATAGCAGAGTCCCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157195 95 + 50109623 CTGGAAGT----GGCAAGTTTTTCAAAGGCAGGGGCAGCCTGA--CAGGACAGACACTGG--AGGCCCTTAGTCCCAGTTACTCAGGAAATAGCAGAGTCCCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180009 95 + 4464012 CTGGAAGT----GGCAAGTTTTTCAAAGGCAGGGGCAGCCTGA--CAGGACAGACACTGG--TGGCACTTAGTCCCAGTTACTCAGGAAATAGCAGAGTCCCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106675773 92 - 115148730 CTGGAAGT----GGCAAGTTTTTCAAAGGCAGGGGCAGCCTGA--CAGGACAGACACTGG--AGGCACTTAGTTCCAGCTACTCAGGAAAT---AGAGTCCCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84290237 95 + 92844088 CTGGAACT----GGCAAGTTTTTCAAAGGCAGGGGCAGCCTGA--CAGGAGAAACACTGG--AGGCACTTAGTCTCAGATACTCAGGAAATAACAGAGTCCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87635284 95 - 96509753 CTGGAACT----GGCAAGTTTTTCAAAGGCAGGGGCAGCCTAA--CAGGAGAAACACTGG--AGGCACTTAGTCTCAGATACTCAGGAAATAACAGAGTCCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7127098 95 - 13098629 CTGGAACT----GGCAAGTTTTTCAAAGGCAGGGGCAGCCTGA--CAGGAGAAACACTGG--AGGCACTTAGTCTCAGATACTCAGGAAATAACAGAGTCCCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4093881 95 - 4483953 CTGGAACT----GGCAAGTTTTTCAAAGACAGGGGCAGCCTGA--CAAGAGAAACACTGG--AGGCACTTAGTCTCAGATACTCAGGAAATAACAGAGTCCCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24724515 95 + 33263144 CTGGAAGT----GGCAAGTTTTTCAAAGGCAGGGGCAGCCTGA--CAGGAGAAACACTGG--AGGCACTTAGTCTCAGATACTCAGGAAATAACAGAGTCCCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14005240 95 - 14338769 CTGGAACT----GGCAAGTTTTTCAAAGGCAGGGGCAGCCTGA--CAGGAGAAACACTGG--AGGCACTTAGTCTCAGATACTCAGGAAATAACAGAGTCCCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943193 95 + 1946073 CTGGAAGT----GGCAAGTTTTTCAAAGGCAGGGGCAGCCTGA--CGGGAAAGACGTTGG--CGGCACTTAGTCTCAGATACTCAGGAAATAGCAGAGTACCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1970807 95 - 2117846 CTGGAAGT----GGCAAGTTTTTCAAAGGCAGGAGCAGCCTGA--CAAGAGACACACTGA--AGGCACTTGATCCCAACTACTCAGGAGATAGCAGAGTCCCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8880953 95 - 16357246 CTGGAAGT----GCCAAGTTTTTCAAAGCCAGGGGCAGCCTGA--CAAGAGAGACACTGG--AGGCACTTGATCCCAACTACTCAGGAGATAGCAGAGTCCCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1366996 95 - 1807191 CTGGAAGT----GGCAAGTTTTTCAAAGGCAAGGATAGCCTGA--CAAGAGAGACACTGG--AGGCACTTGATCCCAACTACTCAGGAGATAGCAGAGTCCCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 47100 95 + 5963231 CTGGAAGT----GGCAAGTTTTTCAAAGGCAGGAGCAGCCTGA--CAAGAGAGACACTGG--AGGTACTTGATCCCAACTTCTCAGGAGATAGCAGAGTCCCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36314340 75 - 42659167 CCAGAAGCAGTGAGTGAGTTTTCCAAAGGCAAGTGTAGGCTAA--CAAGAGAGACAGTGG--AGATGCC------------CTTAGGAGGT------------ i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46115065 80 - 69331447 -CTGAAGC----AGCAAGTCCTACAAGGGCAGAGCCAGTCTGA--AAGG--GGGCAGGGG--AGGCACTT------------TTATATAGAGGCAGAGCTCTA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 95327 86 + 1056298 CTGGAAGA----GGC-AGTTTTTCAAGGGTAGGGGCAGCCTGAACAGGGACAGGCAGCAGAAAGGTACTTA------------TATAGAGGGACAGAGTTTCA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82834894 410 + 104043685 I e proCoq1.NW_012136747v1 5101176 164 - 6317780 I e micMur3.chr7 5736735 173 + 108171978 I a score=208702.000000 s hg38.chr22_GL383582v2_alt 102768 14 + 162811 GCAGAAAGGAACTT s panTro5.chr22 28882680 14 + 37823149 GCAGAAAGGAACTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157290 14 + 50109623 GCAGAAAGGAACTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180104 14 + 4464012 GCAGAAAGAAACTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106675865 14 - 115148730 GCAGAAAGGAACTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84290332 14 + 92844088 GCAGAAAGGAACGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87635379 14 - 96509753 GCAGAAAGGAACGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7127193 14 - 13098629 GCAGAAAGGAACGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4093976 14 - 4483953 GCAGAAAGGAACGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24724610 14 + 33263144 GCAGAAAGGAACGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14005335 14 - 14338769 GCAGAAAGGAACGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943288 14 + 1946073 GCAGAAAGGAACGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1970902 14 - 2117846 GCAGAAAGGAACTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881048 14 - 16357246 GCAGAAAGGAACTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1367091 14 - 1807191 GCAGAAAGGAACTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 47195 14 + 5963231 GCAGAAAGGAACTT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5736908 14 + 108171978 GCAGAAAGGAACTT i micMur3.chr7 I 173 C 0 s proCoq1.NW_012136747v1 5101340 14 - 6317780 GCAGAAAGGAACTT i proCoq1.NW_012136747v1 I 164 C 0 s otoGar3.GL873526 36314415 6 - 42659167 GCAGAA-------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46115145 14 - 69331447 GCAAAAGGGAACCT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 95413 14 + 1056298 GCAGAAAATAATAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82834894 410 + 104043685 I a score=643777.000000 s hg38.chr22_GL383582v2_alt 102782 49 + 162811 ---TCAAAAACGAGGATATCTTGATATACTGAAGCTAATGCCAATG-----AAACTA s panTro5.chr22 28882694 49 + 37823149 ---TCAAAAACGAGGATATCTTGATATACTGAAGCTAATGCCAATG-----AAACTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157304 49 + 50109623 ---TCAAAAACGAGGATATCTTGATATACTGAAGCTAATGCCAATG-----AAACTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180118 49 + 4464012 ---TCAAAAACGAGGATATCTTGATATACTGAAGCTAAAGCCAATG-----AAACTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106675879 49 - 115148730 ---TCAAAAACGAGGATATCTTGATATACTGAAGCTAATGCCAATG-----AAACTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84290346 49 + 92844088 ---TCAAAAACGAGGATATCTTGATATACTGAAGCTACTGCCAATG-----AAACAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87635393 49 - 96509753 ---TCAAAAACGAGGATATCTTGATATACTGAAGCTACTGCCAATG-----AAACAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7127207 49 - 13098629 ---TCAAAAACGAGGATATCTTGATATACTGAAGCTACTGCCAATG-----AAACAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4093990 49 - 4483953 ---TCAAAAACGAGGATATCTTGATATACTGAAGCTACTGCCAATG-----AAACAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24724624 49 + 33263144 ---TCAAAAACGAGGATATCTTGATATACTGAAGCTACTGCCAATG-----AAACAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14005349 49 - 14338769 ---TCAAAAACGAGGATAACTTGATATACTGAAGCTACTGCCAATG-----AAACAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943302 49 + 1946073 ---TAAAAAACGAGGATATCTTGATATACCGAAGCTACTGCCATCG-----AAACGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1970916 54 - 2117846 ---TCAAAATTGAGGATACCATGGTGTACTGAAGCTACTGCTAATGAAACTAAACTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881062 49 - 16357246 ---TCAAAATCAAGGATATCACAGCGTACTGAAGCTACTGCTAATG-----AAACTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1367105 49 - 1807191 ---TCAAAATTGAGGATATCATGGCGTACTGAAGCTACTGCTAATG-----AAACTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 47209 49 + 5963231 ---TCAAAATCGAGGATACCATGGCGTACTGAAGTTACTGCTAATG-----AAACTA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5736922 49 + 108171978 ---TAAAACACTAGGATGTCTTGGCATACTTAAGCTACTGCCAATG-----CAACTA i micMur3.chr7 C 0 I 141 s proCoq1.NW_012136747v1 5101354 49 - 6317780 ---TAAAAAACTAGGATGTCTTGGCATACTTAAGCTACTGCCAATG-----CAACTA i proCoq1.NW_012136747v1 C 0 I 1 s otoGar3.GL873526 36314421 46 - 42659167 ----AAAAAACTAAGATGTCTTGGCATATTTAAG-TATTGCCAATG-----CAACT- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82835304 50 + 104043685 ---TCAACCATATGGAAATGGTAGCTTATTTAAGTTACTGTCGGTGA----AAACTG i mm10.chr15 I 410 I 1 s canFam3.chr10 46115159 49 - 69331447 ---GAAAAAACTAGGATGTCTTGGCACATTTAAGCTACCACCAATA-----CAGCTC i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 95427 51 + 1056298 AGAAAAAAACCTAGGATGCCTTGGTGTGTTTAAAC-AATGCCAAGG-----CAACTG i dasNov3.JH570235 C 0 I 1 a score=232924.000000 s hg38.chr22_GL383582v2_alt 102831 16 + 162811 CCACAGGATCACTGGT s panTro5.chr22 28882743 16 + 37823149 CCACAGGATCACTGGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157353 16 + 50109623 CCACAGGATCACTGGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180167 16 + 4464012 CCACAGGATCACTGGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106675928 16 - 115148730 CCATAGGATCACTGGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84290395 16 + 92844088 CCATGGGATCACTGGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87635442 16 - 96509753 CCATAGGATCACTGGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7127256 16 - 13098629 CCATAGGATCACTGGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4094039 16 - 4483953 CCATAGGATCACTGGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24724673 16 + 33263144 CCATAGGATCACTGGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14005398 16 - 14338769 CCATAGGATCACTGGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943351 16 + 1946073 CCATAGGATCACTGGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1970970 16 - 2117846 CCATAGGATCACTGGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881111 15 - 16357246 CCACAGGATCACC-GT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1367154 16 - 1807191 CCATAGGATCACTGGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 47258 16 + 5963231 CCATAGGATCACTGGT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5101404 16 - 6317780 CTACAGGGTCACTGGT i proCoq1.NW_012136747v1 I 1 I 110 s otoGar3.GL873526 36314467 16 - 42659167 CTATAGGGTCGCTGGT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82835355 14 + 104043685 TCACA-GATCA-TAGT i mm10.chr15 I 1 C 0 s canFam3.chr10 46115209 16 - 69331447 CCATAGGGCTATGGGT i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 95479 16 + 1056298 TCATAGGTTCACTGAT i dasNov3.JH570235 I 1 C 0 e micMur3.chr7 5736971 141 + 108171978 I a score=1009347.000000 s hg38.chr22_GL383582v2_alt 102847 101 + 162811 CCTCAAATCCT-AAG-CCAGCCC------CTGCCA--CC---TCTCAGCCA-----------AGCTTCAGT-GGGGTCATTTAATTTGGCAACAACATGAGACATAGTCTCACATCTCATTTCAGG s panTro5.chr22 28882759 104 + 37823149 CCTCAAATCCT-AAG-CCAGCCC------CCGCCA--CCACCTCTCAGCCA-----------AGCTTCAGT-GGGGTCATTTAATTTGGCAACAACATGAGACATAGTCTCACATCTCATTTCAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157369 101 + 50109623 CCTCAAATCCT-AAG-CCAGCCC------CCGCCA--CC---TCTCAGCCA-----------AGCTTCAGT-GGGGTCATTTAATTTGGCAACAACATGAGACATAGTCTCACATCTCATTTCAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180183 101 + 4464012 CCTCAAATCCT-AAG-CCAGCCC------CCGCCA--CC---TCTCAGCCA-----------AGCTTCAGT-GGGGTCATTTAATTTGGCAATAACATGAGACATAGCCTCACATCTCATTTCAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106675944 101 - 115148730 CCTCAAATCCT-AAG-CCAGCCC------CCGCCA--CC---TCTCAGCCA-----------AGCTTCGGT-GGGGTCATTTAATTTGGCAATAACATGAGACATGGCCTCACATCTCATTTCAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84290411 100 + 92844088 CCTCAAATCCT-AAG-CCAGCCC------CTGCCA--CC---TCTCAGCCA-----------AGCTTCAGT-GTGGTCATTTAATTTGGCAATAACATGAGAC-TAGCCTCACATCTCATTTCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87635458 100 - 96509753 CCTCAAATCCT-AAG-CCAGCCC------CTGCCA--CC---TCTCAGCCA-----------AGCTTCAGT-GTGGTCATTTAATTTGGCAATAACATGAGAC-TAGCCTCACATCTCATTTCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7127272 100 - 13098629 CCTCAAATCCT-AAG-CCAGCCC------CTGCCA--CC---TCTCAGCCA-----------AGCTTCAGT-GTGGTCATTTAATTTGGCAATAACATGAGAC-TAGCCTCACATCTCATTTCAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4094055 101 - 4483953 CCTCAAATCCT-AAG-CCAGCCC------CTGCCA--CC---TCTCAGCCA-----------AGCTTCAGT-GTGGTCATTTAATTTGGCAATAACATGAGACATAGCCTCACATCTCATTTCAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24724689 101 + 33263144 CCTCAAATCCT-AAG-CCAGTCC------CTGCCA--CC---TCTCAGCCA-----------AGCTTCAGT-GTGGTCATTTAATTTGGCAATAACATGAGACATAGCCTCACATCTCATTTCAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14005414 101 - 14338769 CCTCAAATCCT-AAG-CCAGCCC------CTGCCA--CC---TCTCAGCCA-----------AGCTTCAGT-GTGGTCATTTAATTTGGCAATAACATGAGACATAGCTTCACATCTCATTTCAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943367 101 + 1946073 CCTCAAATCCT-AAG-CCAGCCC------CTGCCA--CC---TCTCAGCCA-----------AGCTTCAGT-GGGGTCATTTAATTTGGCAATAACATGAGACATAGCCTCACACCTCATTTCAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1970986 95 - 2117846 CCTGAAATCCT-AAG-CCAGCTG------GCTCCA--CC---TCTCAGCCA-----------AGCTTCAGT-GGGCTCATTTAATGTGGCAATAACATGAGACATCCCCTCAAATCTTTT------ i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881126 101 - 16357246 CCTGAAATCCT-AAG-TCAGCTG------GCCCCA--CC---TCTCAGCCA-----------AGCTTCAGT-GGGCTCATTTAATACGGCAATAACATGAGACATACCCTCAAATCTCTTTTCAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1367170 101 - 1807191 CCTGAAATCCT-AAG-CCAGCTG------GCCCCA--CC---TCTCAGCCA-----------AGCTTCAGT-GGGCTCATTTAATGTGGCAATAACATGAGACATACTCTCAAATCTCTTTTCAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 47274 101 + 5963231 CCTGAAATCCT-AAG-CCAGCTG------GCCTCA--CC---TCTCAGCCA-----------AGCTTCAGT-GGGCTCATTTAATGTGGCAATAACATGAGACATACCCTCAAATCTCTTTTCAGG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36314483 96 - 42659167 -------CCCT-AAGACCAGCAC------CCTAAA--CC---TCTCATCCA-----------GGCTTTAGTGGGGGCCACTCAGTGAGGTGATAACATAAGACACATCCTTACAGCCCATCACGTC i otoGar3.GL873526 C 0 I 4 s mm10.chr15 82835369 68 + 104043685 TCCCACACTCA-AGG-TTAACCA------CTG----------TCCTAGCCA-----------GGCATTAGGAAAGGTCATATTCTGTG-----------------------------CATTTCAGG i mm10.chr15 C 0 C 0 s canFam3.chr10 46115225 101 - 69331447 CCCCACATCCTGAAG-CCAGC---------TGCCA--GA---TCCCAGCAACCCTTTCTGGGGGCTTTA-T-GGGGCCACTTCATGAGGTGTTAATGTGTGAG--------ACACCTCACTTTAGA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 95495 100 + 1056298 GCCCAGGTCATAAAG-CCAACCGAGTGGAATCCCAGTTC---TCTCAGCCA-----------GGCTTTAGGAAAGGTCATTTAATGAGGTGGCAATGGGTGAGAAGCCCTC---CCTC-------- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5101420 110 - 6317780 I e micMur3.chr7 5736971 141 + 108171978 I a score=108030.000000 s hg38.chr22_GL383582v2_alt 102948 10 + 162811 TC---ACTCCCAC s panTro5.chr22 28882863 10 + 37823149 TC---ACTCCCAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157470 10 + 50109623 TC---ACTCCCAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180284 10 + 4464012 TC---ACTCCCAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676045 10 - 115148730 TC---ACTCCCAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84290511 10 + 92844088 TC---ACTCGCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87635558 10 - 96509753 TC---ACTCCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7127372 10 - 13098629 TC---ACTCCCAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4094156 10 - 4483953 TC---ACTCCCAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24724790 10 + 33263144 TC---ACTCCCAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14005515 10 - 14338769 TC---ACTCCCAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943468 10 + 1946073 AC---ACTCCCAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1971081 1 - 2117846 ------------C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881227 10 - 16357246 TC---ACTCCTAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1367271 10 - 1807191 TC---ACTCCTAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 47375 10 + 5963231 TC---ACTCCTAC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5101530 10 - 6317780 TC---ACTCTCAT i proCoq1.NW_012136747v1 I 110 C 0 s otoGar3.GL873526 36314583 10 - 42659167 TC---ACTCCCAC i otoGar3.GL873526 I 4 C 0 s mm10.chr15 82835437 6 + 104043685 TC---ACTC---- i mm10.chr15 C 0 C 0 s canFam3.chr10 46115326 13 - 69331447 TCTGAACCCTCAC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 95595 7 + 1056298 ------CTCCCAC i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5736971 141 + 108171978 I a score=1582571.000000 s hg38.chr22_GL383582v2_alt 102958 111 + 162811 -AGGTCATGCTCAAACCGGGGCCTTTTCTTCCTGGAAACC---TA-CTGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTG-TGACTAGCTTATGAAC s panTro5.chr22 28882873 111 + 37823149 -AGGTCATGCTCAAACCGGGGCCTTTTCTTCCTGGAAACC---TA-CTGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTG-TGACTAGCTTATGAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157480 111 + 50109623 -AGGTCATGCTCAAACCGGGGCCTTTTCTTCCTGGAAACC---TA-CTGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTG-TGACTAGCTTATGAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180294 111 + 4464012 -AGGTCATGCTCAACCAGGGGCCTTTTCTTCCTGGAAACC---TA-TTGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTG-TGACTAGCTTATGAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676055 111 - 115148730 -AGGTCATGCTCAACCAGGGGCCTTTTCTTCCTGGAAACC---TA-CTGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTG-TGACTAGCTTATGAAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84290521 111 + 92844088 -AGGTCATGCTCAATCCAGGGCCTTTTCTTCCTGGAAACC---TA-CCGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTG-TGACTAGCTTATGAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87635568 111 - 96509753 -AGGTCATGCTCAATCCAGGGCCTTTTCTTCCTGGAAACC---TA-CCGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTG-TGACTAGCTTATGAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7127382 111 - 13098629 -AGGTCATGCTCAATCCAGGGCCTTTTCTTCCTGGAAACC---TA-CCGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTG-TGACTAGCTTATGAAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4094166 111 - 4483953 -AGGTCATGCTCAATCCAGGGCCTTTTCTTCCTGGAAACC---TA-CCGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTG-TGACTAGCTTATGAAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24724800 111 + 33263144 -AGGTCATGCTCAATCCAGGGCCTTTTCTTCCTGGAAACC---TA-CCAGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTG-TGACTAGCTTATGAAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14005525 111 - 14338769 -AGGTCATGCTCAATCCAGGGCCTTTTCTTCCTGGAAACC---TA-CCGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTG-TGACTAGCTTATGAAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943478 111 + 1946073 -AGGTCATGCTCAATCCAGGGCCTTTTCTTCCTGGAAACC---TA-CTGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCGG-TGATTAGCTTATGAAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1971082 112 - 2117846 -AGGTCATGCTCAACCCAGGGCCTTTTCTTCCTGGAAACC---TA-CTGGAAGGAAAAAGTATATGCACACCTAGAATGTAAACTTTGACACCCAAATCTG-TAACTAGCTTATGAAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881237 112 - 16357246 -AGGTCATGCTCAACCCAGGGCCTTTTCTTCCTGGAAACC---TA-CTGGAAGGAAAAAGTATATGCGCACCTAGAATGTAAACTTTGACACCCAGATGTG-TAACTAGCTTATGAAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1367281 112 - 1807191 -AGCTCATGCTCAACCCAGGGCCTTTTCTTCCTGGAAACC---TA-CTGGAAGGAAAAAGTATACGCATACCTAGAATGTAAACTTTGACACCCAGATCTG-TAACTAGCTTATGAAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 47385 112 + 5963231 -AGGTCATGCTCAACCCAGGGCCTTTTCTTCCTGGAAACC---TA-CTGGAAGGAAAAAGTATATGCACACCTAGAATGTAAACTTTGACACCCAGATCTG-TAACTAGCTTATGAAC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5737112 115 + 108171978 -AGGTCATGCTCAATCTGGGGCCTTTTCTTCCTGGACACCCTGTA-CTGGAAGGAAAAACTTGGTCCAAATCTAGAATGAAAATTTTGGCATCTAGATCTA-TGACTAGCTTATGAAC i micMur3.chr7 I 141 I 125 s proCoq1.NW_012136747v1 5101540 115 - 6317780 -AGGTCATGCTTAATCTGGGGCCTTTTCCTCCTGCACACCTTGTA-CTGGAAGGAAAAACTTGGTCCAAATCTAGAATGAAAATTTTGGCATCCAAATCTA-TGACTAGATTATGAAC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36314593 114 - 42659167 -AGTACAAGCCTAACCCAAGGCCTTTTCTTCCAGGACACTTGGTA-CTGAAAAGAAAAAGTTGGTCCAAAT-TAGAATGGAAATTCTGGCACCTACATCTA-CAACTAGATTATGGAC i otoGar3.GL873526 C 0 I 4 s mm10.chr15 82835443 107 + 104043685 ----TGATTCCCA---CGAGCATTCTTATTCCTGCTAACT-TGTA-CTGGAAGGCAAAGGTTGGTCTAGATCTTCAA-GAGCACTATAGTGCTCAGGTCTG-AGACCAACTCACCAAT i mm10.chr15 C 0 C 0 s canFam3.chr10 46115339 87 - 69331447 ---------------------GTTTTTCTTCCCAGAAACCTTACA-CTGGAAGGAAACAGTTGGTCCAAACCTAGTGTGGAGAC--TGGTACCAAAATTAGTTGACTAGTT------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 95602 114 + 1056298 AGGATTCCTCTTACCCTGGGGCCTTTTCTTCCTGGAGACCTTGTATCCGGAAGAAAAAACTTGGCTCAACTTGAGAATGGAAATTCTGGTGCCCAGATCTG-TGACTAGCTTAAG--- i dasNov3.JH570235 C 0 C 0 a score=197501.000000 s hg38.chr22_GL383582v2_alt 103069 15 + 162811 CTTCAGTTTTCAGAA s panTro5.chr22 28882984 15 + 37823149 CTTCAGTTTTCAGAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157591 15 + 50109623 CTTCAGTTTTCAGAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180405 15 + 4464012 CTTCAGTTTTCAGAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676166 15 - 115148730 CTTCAGTTTTCAGAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84290632 15 + 92844088 CTTGAGTTTTCAGAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87635679 15 - 96509753 CTTGAGTTTTCAGAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7127493 15 - 13098629 CTTGAGTTTTCAGAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4094277 15 - 4483953 CTTGAGTTTTCAGAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24724911 15 + 33263144 CTTGAGTTTTCAGAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14005636 15 - 14338769 CTTGAGTTTTCAGAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943589 15 + 1946073 CTTGAGTTTTCAGAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1971194 15 - 2117846 CTTGAGTTTTCAGCG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881349 15 - 16357246 CTTGAGTTTTCAGAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1367393 15 - 1807191 CTTGAGTTTTCAGAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 47497 15 + 5963231 CTTGAGTTTTCAGAG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5101655 15 - 6317780 CCTGAGTTTTCAGAG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36314711 15 - 42659167 GCTGAGTTTTCAGAA i otoGar3.GL873526 I 4 C 0 s mm10.chr15 82835550 15 + 104043685 ACTGAGTTCTCTGAA i mm10.chr15 C 0 C 0 s canFam3.chr10 46115426 14 - 69331447 -ttcttttttaagat i canFam3.chr10 C 0 I 443 e dasNov3.JH570235 95716 0 + 1056298 C e micMur3.chr7 5737227 125 + 108171978 I a score=1364048.000000 s hg38.chr22_GL383582v2_alt 103084 122 + 162811 TTGATTTTTGCATTTCTCAAAGGGTA----ACTC--TGCCACCTGCACCAGCATGGTCCTAAGC-----T-TGAGTTAAAAAACACAGACTGAGGACACTGTCCCAGAAGAGACTGAATGGGAAGCATCCCAGG s panTro5.chr22 28882999 120 + 37823149 TTGATTTTTGCATTTCTCAAAGGGTA----ACTC--TGCCACCTGCACCAGCATGGTCCTAAGC-----T-TGAGTTAAAAAACA--GACTGAGGACACTGTCCCAGAAGAGACTGAATGGGAAGCATCCCAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157606 120 + 50109623 TTGATTTTTGCATTTCTCAAAGGGTA----ACTC--TGCCACCTGCACCAGCATGGTCCTAAGC-----T-TGAGTTAAAAAACA--GACTGAGGACACTGTCCCAGAAGAGACTGAATGGGAAGCATCCCAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180420 122 + 4464012 TTGATTTTTGCATTTCTCAAAGTGTA----ACTC--TGCCACCTGCACCAGCATGGTCCTAAGC-----T-TGAGTTAAAAAAAACAGACTGAGGACACTGTCCCAGAAGAGACTGAATGGGAAGTATCCCAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676181 121 - 115148730 CTGATTTTTGCATTTCTCAAAGTGTA----ACTC--TGCCACCTGCAACAGCATGGTCCCAAGC-----C-TGAGCTAAAAAAAA-AGACTGAGGACACTGTCCCAGAAGAGACTGAATGGGAAGCATCCCAGG i nomLeu3.chr7b C 0 I 4 s rheMac8.chr10 84290647 121 + 92844088 TTGATTTCTGCATTTCTCAAAGTGTA----ACTC--TGCCACCAGCACCAGCATGGTCCCAAGC-----T-TGAGTTAAAAAAAC-AGACTGAGGACACTGTCCCAAAAAAGACTGAATGGGAAGCATCCCAGG i rheMac8.chr10 C 0 I 3 s macFas5.chr10 87635694 121 - 96509753 TTGATTTCTGCATTTCTCAAAGTGTA----ACTC--TGCCACCAGCACCAGCATGGTCCCAAGC-----T-TGAGTTAAAAAAAC-AGACTGAGGACACTGTCCCAAAAGAGACTGAATGGGAAGCATCCCAGG i macFas5.chr10 C 0 I 3 s macNem1.NW_012012688v1 7127508 121 - 13098629 TTGATTTCTGCATTTCTCAAAGTGTA----ACTC--TGCCACCAGCACCAGCATGGTCCCAAGC-----T-TGAGTTAAAAAAAC-AGACTGAGGACACTGTCCCAAAAGAGACTGAATGGGAAGCATCCCAGG i macNem1.NW_012012688v1 C 0 I 3 s cerAty1.NW_011999588v1 4094292 121 - 4483953 TTGATTTCTGCATTTCTCAAAGTGTA----ACTC--TGCCACCTGCACCAGCATGGTCCCAAGC-----T-TGAGTTAAAAAAAC-AGACTGAGGACACTGTCCCAAAAGAGACTGAATGGGAAGCATCCCAGG i cerAty1.NW_011999588v1 C 0 I 3 s chlSab2.chr19 24724926 121 + 33263144 TTGATTTCTGCATTTCTCAAAGTGTA----ACTC--TGCCACCTGCACCAGCATGGTCCCAAGC-----T-TGAGTTAAAAAAAC-AGACTGAGGACACTGTCCCAAAAGAGACTGAATGGGAAGCATCCCAGG i chlSab2.chr19 C 0 I 3 s manLeu1.NW_012102031v1 14005651 121 - 14338769 TTGATTTCTGCATTTCTCAAAGTGTA----ACTC--TGCCACCTGCACCAGCATGGTCCCAAGT-----T-TGAGTTAAAAAAAC-AGACTGAGGACACTGTCCCAAAAGAGACTGAATGGGAAGCATCCCAGG i manLeu1.NW_012102031v1 C 0 I 3 s colAng1.NW_012115588v1 943604 121 + 1946073 TTGATTTTTGCACTTCTCAAAGTGTA----ACTC--TGCCACCTGCACCAGCATGGTCCCAAGC-----T-TGAGTTAAAAAAAC-AGACTGAGGACACTGTCCCAAAAGAGACTGAATGGGAAGCATCCCAGG i colAng1.NW_012115588v1 C 0 I 3 s calJac3.chrUn_GL286373 1971209 122 - 2117846 TTGACTTTTGCATTTCTCAAAGTGTA----ACTT--TGGCACCTGCACCAACATGGTCCCAAGC-----T-TGAATTAAAATATGCAGCCTGAGGACATTATCCCAGAAGAGACTGAATGGGAAGCATCCTGGG i calJac3.chrUn_GL286373 C 0 I 3 s saiBol1.JH378157 8881364 122 - 16357246 TTGACTTTTGCATTTCTCAGAGTGTA----ACTC--TGCCACCTGCACCAGCATGGTCCCAAGC-----T-TGAATTAAAATATGCAGCCTGAGGAAATTATCCCAGAAGAGACTGAATGGGAAGCTTCCTGGG i saiBol1.JH378157 C 0 I 3 s cebCap1.NW_016107750v1 1367408 121 - 1807191 TTGACTTTTGCATTTCTCAAAGTGTA----ACTC--TGCCA-CTGCACCAGCATGGTCCCCAGC-----T-TGAATTAAAATATGCAGCCTGAGGACACTATCCCAGAAGATACTGAATGGGAAGCATCCTGGG i cebCap1.NW_016107750v1 C 0 I 3 s aotNan1.NW_018512383v1 47512 122 + 5963231 TTGACTTTTgtatttctcaaagtgta----actc--tgccacctgcaccagcatggtcccaagc-----t-tgaattaaaatatgcagcctgaggacattatcccagaagagactgaatgggaagcatcctggg i aotNan1.NW_018512383v1 C 0 I 3 s proCoq1.NW_012136747v1 5101670 123 - 6317780 TTGATTTTAGCATTTCAcaaagtata----actctatgtcacctgcaccagcatcatccgaagc-----t-tgtgttaaaaatgc-agactgagggcaccaccctaggagaggctgtgtgggcagcattccaga i proCoq1.NW_012136747v1 C 0 I 3 s otoGar3.GL873526 36314726 121 - 42659167 TTGATTCTAGCATttcacaaagtgtt----gctctctgtcacctgcaccagtatcatccaaagc-----t-tgtggtgaaattgc-agact--gggtgccatcctagGAGAGGCTGTGTGGCTGGCAGTCTAAA i otoGar3.GL873526 C 0 I 3 s mm10.chr15 82835565 96 + 104043685 ATGA------CACCTC--------------ATTT--TCTCACTTGTAGGTGCCCTGCCCAAAGTAAAAGG-TGAGTTACAAAAGG-AAACTAAAGATACAACAC--------------TGGGAAACTGCTCAGC i mm10.chr15 C 0 C 0 s canFam3.chr10 46115883 108 - 69331447 tttatttttatttttTTCAGAGTCCATTTTGGTC--TGGCACCTG---------------AAGC-----A-TGTGTTAACAATGC-AGACAACAGCCACAACCC--AGAGAGACTGAATGTGCAGCATTCTAAG i canFam3.chr10 I 443 I 3 s dasNov3.JH570235 95716 75 + 1056298 -------------------------------------------------ATCACGACTATGAAC-----TGTGTGTTAAAAATAC-AGACTGCGGCCACCACCCT----GAGACTGAGTGTACAGTACCCCCAG i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5737227 125 + 108171978 I a score=1168483.000000 s hg38.chr22_GL383582v2_alt 103206 83 + 162811 TTCTTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCTTCATAGATATGGAAATTTTCTTCTAC-ATT-TCTGTTTCA s panTro5.chr22 28883119 83 + 37823149 TTCTTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCTTCATAGATATGGAAATTTTCTTCTAT-ATT-TCTGTTTCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157726 83 + 50109623 TTCTTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCTTCATAGATATGGAAATTTTCTTCTAT-ATT-TCTGTTTCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180542 83 + 4464012 TTCTTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCTTCATAGATATGGAAATTTCCTTCTAC-ATT-TCTGTTACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676306 83 - 115148730 TTCTTATCCTCAAGAAAGTTTTAAAACTATTGGTTCAATTCATCTTCATAGATGTGGAAATTTTCTTCTAC-ATT-TCTGTTTCA i nomLeu3.chr7b I 4 C 0 s rheMac8.chr10 84290771 82 + 92844088 TT-TTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCTTCATAGATGCGGAAACTTTCTTCTAC-ATT-TCCGTTTCA i rheMac8.chr10 I 3 C 0 s macFas5.chr10 87635818 82 - 96509753 TT-TTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCTTCATAGATGCGGAAACTTTCCTCTAC-ATT-TCCGTTTCA i macFas5.chr10 I 3 C 0 s macNem1.NW_012012688v1 7127632 82 - 13098629 TT-TTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCTTCATAGATGCGGAAACTTTCTTCTAC-ATT-TCCGTTTCA i macNem1.NW_012012688v1 I 3 C 0 s cerAty1.NW_011999588v1 4094416 83 - 4483953 TTCTTATCCTCAAGAAAGTTTTAGAACTCTTGGTTCAATTCATCTTCATAGATGTGGAAACTTTCTTCTAC-ATT-TCAGTTTCA i cerAty1.NW_011999588v1 I 3 C 0 s chlSab2.chr19 24725050 83 + 33263144 TTCTTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCCTCACAGATGTGGAAACTTTCTTCTAC-ATT-TCAGTTTCA i chlSab2.chr19 I 3 C 0 s manLeu1.NW_012102031v1 14005775 81 - 14338769 TTCTTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCTTCATAGATGTGGAAACTT--TTCTAC-ATT-TCAGTTTCA i manLeu1.NW_012102031v1 I 3 C 0 s colAng1.NW_012115588v1 943728 83 + 1946073 TTCTTATCCTCAAGAAAGTTTTAGAACTACTGGTTCAATTCATCTTCACAGATGTGGAAATTTTCTTCAAC-ATT-TCAGTTTCA i colAng1.NW_012115588v1 I 3 C 0 s calJac3.chrUn_GL286373 1971334 83 - 2117846 TTCTTATCCTCAAGAAAGTTTAAGAACTATTGATTCAATTTATCTTCATGGATGTGGAAACTTTCTTCTAC-GTT-TCTGTTTCA i calJac3.chrUn_GL286373 I 3 C 0 s saiBol1.JH378157 8881489 83 - 16357246 TTTTTATCCTCAAGGAAGTTTAAGAACTATTGATTCAATTCATCTTCATGGATGTAGAAATTTTCTTCTAC-ATG-TCTGTTTCA i saiBol1.JH378157 I 3 C 0 s cebCap1.NW_016107750v1 1367532 83 - 1807191 TTCTTATGCTCAAGAAAGTTTAAGAACTATTGATTCAATTCATCTTCATGGATGTAGAAATTTTCTTCTAC-ATT-TCTGTTTCA i cebCap1.NW_016107750v1 I 3 C 0 s aotNan1.NW_018512383v1 47637 83 + 5963231 TTCATATCCTCAAGTAAGTTTAAGAACTATTGATTCAATTCATCTTCATGGATGTGGAAATTTTCTTCTAC-ATT-TCTGTTTCA i aotNan1.NW_018512383v1 I 3 C 0 s micMur3.chr7 5737352 81 + 108171978 TTCTTATCCTAAAAAAAGTTTAAGAACTATTGGTTCAATCGACCTTTATGGATATGAAAATCTTATTCTTC-ATT---TGTTTTA i micMur3.chr7 I 125 C 0 s proCoq1.NW_012136747v1 5101796 83 - 6317780 ttcttatcctcaagaaagtttaagaactattgGTTCAATCCACCTTTATGAATGTGAAAATCTTATTCTTC-ATT-TCTGTTTTA i proCoq1.NW_012136747v1 I 3 C 0 s otoGar3.GL873526 36314850 81 - 42659167 TTCTTACCCTCAAGAAAGTTTGAGAACCATTGGTTCAATCCACCTTCATGAATATGGATATTTTATTCTTC-ATC---TGTCTTA i otoGar3.GL873526 I 3 C 0 s mm10.chr15 82835661 46 + 104043685 ------TCCAAAGG------TAATGACTACAAGTTCAATCCA-------------------------CTAC-ACT-TCATCCTGA i mm10.chr15 C 0 C 0 s canFam3.chr10 46115994 84 - 69331447 TTCTTATCCCCCCAAAAGTTTAAGAACTATTGGCTCAATTCAGCTTCATGGATATGGGCATTTTCTTCTTT-ATTTTCTATTTTA i canFam3.chr10 I 3 I 403 s dasNov3.JH570235 95791 75 + 1056298 --CTTAACCCCGAGAGAGTCTGTGTACCACTGGTTCAACCCA-CTTTACGGATATGGACATTTTCTTCAACTATT-TCA------ i dasNov3.JH570235 C 0 C 0 a score=590878.000000 s hg38.chr22_GL383582v2_alt 103289 52 + 162811 GAAGATTCCTAC-------------CAGATTAG---GAAGATACTC---AGCAAGAGTACAATCCTCATTT s panTro5.chr22 28883202 52 + 37823149 GAAGATTCCTAC-------------CAGATTAG---GAAGATACTC---AGCAAGAGTACAATCCTCATTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157809 52 + 50109623 GAAGATTCCTAC-------------CAGATTAG---GAAGATACTC---AGCAAGAGTACAATCCTCATTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180625 52 + 4464012 GAAGATTCCTAC-------------CAGATTAG---GAAGATACTC---AGCAAGAGTACAATCCTCATTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676389 52 - 115148730 GAAGATTCCTAC-------------CAGATTAG---GAAGATACTC---GGCAAGAGTACAATCCTCATTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84290853 52 + 92844088 GAAGATTCCTAC-------------CAGATTAG---GAAGATATTC---CGCAAGAGTACAATCTTCACTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87635900 52 - 96509753 GAAGATTCCTAC-------------CAGATTAG---GAAGATACTC---CGCAAGAGTACAATCTTCACTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7127714 52 - 13098629 GAAGATTCCTAC-------------CAGATTAG---GAAGATATTC---CGCAAGAGTACAATCTTCACTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4094499 52 - 4483953 GAAGATTCCTAC-------------CAGATTAG---GAAGATACTC---CGCAAGAGTACAATCTTCACTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24725133 52 + 33263144 GAAGATTCCTAC-------------CAGATTAG---GAAGATACTC---AGCAAGAGTACAATCTTCACTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14005856 52 - 14338769 GAAGATTCCTAC-------------CAGATTAG---GAAGATACTC---CGCAAGAGTACAATCTTCACTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943811 52 + 1946073 GAAGATTCCTAC-------------CAGATTAG---GAAGATACTC---AGCAAGAGTACAATCCTCACTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1971417 68 - 2117846 GAAGATTCCTAACTTTCTGCTCTTGCTGAGCAG---GAAGATACTCTTGAGCAAGAGTCCAATCCTTACTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881572 68 - 16357246 GAAGATTCCTAACTTCCTGCTCTTGCTGAGCAG---GAAGATACTCTTGAGCAAGAGTCCAATCCTTACTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1367615 68 - 1807191 GAAGATTCCTAACTTCCTGCTGTTGCTGAGCAG---GAAGATACTCTTGAGCAAGAACCCAATCCTTACTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 47720 68 + 5963231 GAAGATTCCTAACTTCCTGCTCTTGCTGAGCAG---GAAGATACTCTTGAGCAAGAGTCCAATCCTTACTT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5737433 52 + 108171978 GAAGATTACAGT-------------CAGAGTAG---GAAGATATTC---AACAAGAATCTAATCCTTACTT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5101879 52 - 6317780 GAAGATTACTGC-------------CAGCGTAG---GAAGATACTC---AGCAAGAATCCAATCCTTACTT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36314931 55 - 42659167 GAAAATTACCAC-------------TGAAGTAGGAAGAAGATATTC---AGCAAGAATCCAGTCCTCACtt i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82835707 45 + 104043685 TTTAGTTTCTCC-------------CAGG--AA---GAAGA--------ATCGAGAAGCCAAGGGCTACTT i mm10.chr15 C 0 C 0 s dasNov3.JH570235 95866 36 + 1056298 ---GATTAGTCC-------------CAGAGTAG---GAAGA--------GGC-------CAATCCTCACT- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46116078 403 - 69331447 I a score=129822.000000 s hg38.chr22_GL383582v2_alt 103341 11 + 162811 CAACAGAAAAG s panTro5.chr22 28883254 11 + 37823149 CAACAGAAAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157861 11 + 50109623 CAACAGAAAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180677 11 + 4464012 CAACAGAAAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676441 11 - 115148730 CAACAGaaaag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84290905 11 + 92844088 CAACAGAAAAg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87635952 10 - 96509753 CAACAGAAAA- i macFas5.chr10 C 0 I 2 s macNem1.NW_012012688v1 7127766 11 - 13098629 CAACAGAAAAg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4094551 11 - 4483953 CAACAGAAAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24725185 11 + 33263144 CAACAGAAggg i chlSab2.chr19 C 0 I 10 s manLeu1.NW_012102031v1 14005908 8 - 14338769 CAACAGAA--- i manLeu1.NW_012102031v1 C 0 I 7 s colAng1.NW_012115588v1 943863 11 + 1946073 CAACAGAGAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1971485 11 - 2117846 CAACAGAAAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881640 11 - 16357246 CAACAGAAAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1367683 11 - 1807191 CAACAGAAAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 47788 11 + 5963231 CAACAGAAAAG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5737485 11 + 108171978 CAACAGAAAAG i micMur3.chr7 C 0 I 764 s proCoq1.NW_012136747v1 5101931 11 - 6317780 CAACAGAGAAG i proCoq1.NW_012136747v1 C 0 I 398 s mm10.chr15 82835752 6 + 104043685 CAACAG----- i mm10.chr15 C 0 C 0 e dasNov3.JH570235 95902 0 + 1056298 C e canFam3.chr10 46116078 403 - 69331447 I e otoGar3.GL873526 36314986 0 - 42659167 C a score=7800.000000 s hg38.chr22_GL383582v2_alt 103352 1 + 162811 G s panTro5.chr22 28883265 1 + 37823149 G i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157872 1 + 50109623 G i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180688 1 + 4464012 G i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676452 1 - 115148730 g i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84290916 1 + 92844088 g i rheMac8.chr10 C 0 I 27 s macNem1.NW_012012688v1 7127777 1 - 13098629 g i macNem1.NW_012012688v1 C 0 I 10 s cerAty1.NW_011999588v1 4094562 1 - 4483953 G i cerAty1.NW_011999588v1 C 0 I 1 s colAng1.NW_012115588v1 943874 1 + 1946073 G i colAng1.NW_012115588v1 C 0 I 1 s calJac3.chrUn_GL286373 1971496 1 - 2117846 G i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881651 1 - 16357246 G i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1367694 1 - 1807191 G i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 47799 1 + 5963231 G i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82835758 0 + 104043685 C e dasNov3.JH570235 95902 0 + 1056298 C e canFam3.chr10 46116078 403 - 69331447 I e otoGar3.GL873526 36314986 0 - 42659167 C e proCoq1.NW_012136747v1 5101942 398 - 6317780 I e micMur3.chr7 5737496 764 + 108171978 I e manLeu1.NW_012102031v1 14005916 7 - 14338769 I e chlSab2.chr19 24725196 10 + 33263144 I e macFas5.chr10 87635962 2 - 96509753 I a score=-18048.000000 s hg38.chr22_GL383582v2_alt 103353 17 + 162811 AAAAAGG-------AAAAAAAGAA s panTro5.chr22 28883266 17 + 37823149 AAAAAGG-------AAAAAAAGAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157873 16 + 50109623 AAAAAGG--------AAAAAAGAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180689 16 + 4464012 AAAAAGG--------AAAAAAAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676453 24 - 115148730 aaaaaggaaaaaaaaaaaaaaaaa i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87635964 7 - 96509753 GGGGGGG----------------- i macFas5.chr10 I 2 I 3 s macNem1.NW_012012688v1 7127788 7 - 13098629 ggggggt----------------- i macNem1.NW_012012688v1 I 10 I 3 s cerAty1.NW_011999588v1 4094564 7 - 4483953 TGGGGGA----------------- i cerAty1.NW_011999588v1 I 1 I 2 s chlSab2.chr19 24725206 7 + 33263144 cgggggg----------------- i chlSab2.chr19 I 10 C 0 s manLeu1.NW_012102031v1 14005923 7 - 14338769 CGGGGGG----------------- i manLeu1.NW_012102031v1 I 7 C 0 s colAng1.NW_012115588v1 943876 7 + 1946073 AAGGaaa----------------- i colAng1.NW_012115588v1 I 1 I 12 s calJac3.chrUn_GL286373 1971497 9 - 2117846 ---------------AAAAAAGAA i calJac3.chrUn_GL286373 C 0 I 19 s saiBol1.JH378157 8881652 9 - 16357246 ---------------AAAAAAGAA i saiBol1.JH378157 C 0 I 25 s cebCap1.NW_016107750v1 1367695 9 - 1807191 ---------------AAAAAAGAA i cebCap1.NW_016107750v1 C 0 I 19 s aotNan1.NW_018512383v1 47800 9 + 5963231 ---------------AAAAAAGAA i aotNan1.NW_018512383v1 C 0 I 18 e mm10.chr15 82835758 0 + 104043685 C e dasNov3.JH570235 95902 0 + 1056298 C e canFam3.chr10 46116078 403 - 69331447 I e otoGar3.GL873526 36314986 0 - 42659167 C e proCoq1.NW_012136747v1 5101942 398 - 6317780 I e micMur3.chr7 5737496 764 + 108171978 I e rheMac8.chr10 84290917 27 + 92844088 I a score=694265.000000 s hg38.chr22_GL383582v2_alt 103370 62 + 162811 AAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTA s panTro5.chr22 28883283 62 + 37823149 AAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157889 62 + 50109623 AAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180705 62 + 4464012 AAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676477 62 - 115148730 aaggaaaCTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATACAACCAAGTTTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84290944 60 + 92844088 AAGGAAACTCCA--AGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTA i rheMac8.chr10 I 27 I 553 s macFas5.chr10 87635974 62 - 96509753 AAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTA i macFas5.chr10 I 3 C 0 s macNem1.NW_012012688v1 7127798 62 - 13098629 AAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTA i macNem1.NW_012012688v1 I 3 C 0 s cerAty1.NW_011999588v1 4094573 62 - 4483953 AAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTA i cerAty1.NW_011999588v1 I 2 C 0 s chlSab2.chr19 24725213 62 + 33263144 AAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14005930 62 - 14338769 AAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943895 62 + 1946073 aaGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTAGAAGTAATATAACCTAGTTTA i colAng1.NW_012115588v1 I 12 C 0 s calJac3.chrUn_GL286373 1971525 62 - 2117846 AAGGAAACTCCAAGAGTCTCCATGAAGAAAGTTGAGATCTGGAAGTAATATAACGAAGTTTA i calJac3.chrUn_GL286373 I 19 C 0 s saiBol1.JH378157 8881686 62 - 16357246 AAGGAAACTCCAAGAGTATCCATGAAGAAAACAGAGATCTGGAAGTAATAAAACTAAGTTTA i saiBol1.JH378157 I 25 C 0 s cebCap1.NW_016107750v1 1367723 62 - 1807191 AAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTGA i cebCap1.NW_016107750v1 I 19 C 0 s aotNan1.NW_018512383v1 47827 62 + 5963231 AAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGACCTGGAAGTAATATAACCAAGTTTA i aotNan1.NW_018512383v1 I 18 C 0 s mm10.chr15 82835758 40 + 104043685 ---------------------GTGAAGAAAATGGAAATTTCCAAGTAACATGACAAGGTAA- i mm10.chr15 C 0 C 0 s dasNov3.JH570235 95902 49 + 1056298 --------TCTCACAGT-----TGAAGAAAACGGAGACTTGAAAGTCAAATGACCAAGACCA i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46116078 403 - 69331447 I e otoGar3.GL873526 36314986 0 - 42659167 C e proCoq1.NW_012136747v1 5101942 398 - 6317780 I e micMur3.chr7 5737496 764 + 108171978 I a score=148768.000000 s hg38.chr22_GL383582v2_alt 103432 14 + 162811 GAAATCCTGCATAA s panTro5.chr22 28883345 14 + 37823149 GAAATCCTGCATAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157951 14 + 50109623 GAAATCCTGCATAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180767 14 + 4464012 GAAATCCTGCGTAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676539 14 - 115148730 GAAATCCTGCATAA i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87636036 14 - 96509753 GAAATCCTGCATAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7127860 14 - 13098629 GAAATCCTGCATAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4094635 14 - 4483953 GAAATCCTGCATAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24725275 14 + 33263144 GAAATCCTGCATAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14005992 14 - 14338769 GAAATCCTGCATAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943957 14 + 1946073 GAAATCCTGCATAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1971587 14 - 2117846 GAAATCCTGAATAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881748 14 - 16357246 GAAATCCTGAATAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1367785 14 - 1807191 GAAATCCTGAATAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 47889 14 + 5963231 GAAATCCTGAATAA i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82835798 14 + 104043685 GAAACTCTAATTAA i mm10.chr15 C 0 C 0 s dasNov3.JH570235 95951 14 + 1056298 GAAATCTTGACTAA i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46116078 403 - 69331447 I e otoGar3.GL873526 36314986 0 - 42659167 C e proCoq1.NW_012136747v1 5101942 398 - 6317780 I e micMur3.chr7 5737496 764 + 108171978 I e rheMac8.chr10 84291004 553 + 92844088 I a score=31040.000000 s hg38.chr22_GL383582v2_alt 103446 4 + 162811 -TTCC s panTro5.chr22 28883359 4 + 37823149 -TTCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157965 4 + 50109623 -TTCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180781 4 + 4464012 -TTCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676553 4 - 115148730 -TTCC i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87636050 4 - 96509753 -TTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7127874 4 - 13098629 -TTCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4094649 4 - 4483953 -TTCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24725289 4 + 33263144 -TTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14006006 4 - 14338769 -TTCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943971 4 + 1946073 -TTCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1971601 2 - 2117846 -TT-- i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8881762 4 - 16357246 -TTCC i saiBol1.JH378157 C 0 I 2 s cebCap1.NW_016107750v1 1367799 4 - 1807191 -TTCC i cebCap1.NW_016107750v1 C 0 I 340 s aotNan1.NW_018512383v1 47903 4 + 5963231 -TTCC i aotNan1.NW_018512383v1 C 0 I 2 s otoGar3.GL873526 36314986 4 - 42659167 -ttcc i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 95965 4 + 1056298 ACTC- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82835812 0 + 104043685 C e canFam3.chr10 46116078 403 - 69331447 I e proCoq1.NW_012136747v1 5101942 398 - 6317780 I e micMur3.chr7 5737496 764 + 108171978 I e rheMac8.chr10 84291004 553 + 92844088 I a score=140465.000000 s hg38.chr22_GL383582v2_alt 103450 26 + 162811 TCAATACATCTCCTCCTCCTCCACCT s panTro5.chr22 28883363 26 + 37823149 TCAATACATCTCCTCCTCCTCCACCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157969 26 + 50109623 TCAATACATCTCCTCCTCCTCCACCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180785 26 + 4464012 TCAATACATCTCCTCCTCCTCCACCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676557 23 - 115148730 TCAATACAT---CTTCTTCTCCACCT i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87636054 23 - 96509753 TCAATACGT---CTCCTCCTCCACCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7127878 23 - 13098629 TCAATACGT---CTCCTCCTCCACCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4094653 23 - 4483953 TCAATACGT---CTCCTCCTCCACCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24725293 23 + 33263144 TCAATACGT---CTCCTCCTCCACCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14006010 23 - 14338769 TCAATACGT---CTCCTCCTCCACCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 943975 23 + 1946073 TCAACACGT---CTCCTCCTCCACCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1971604 21 - 2117846 TCAATACAT---CTCCACCTTCAC-- i calJac3.chrUn_GL286373 I 1 I 1 s saiBol1.JH378157 8881768 21 - 16357246 TCAATACAT---CTCCACCTTCAC-- i saiBol1.JH378157 I 2 I 1 s aotNan1.NW_018512383v1 47909 21 + 5963231 TCAATACAT---CTCCACCTTCAC-- i aotNan1.NW_018512383v1 I 2 C 0 s mm10.chr15 82835812 24 + 104043685 --AATGTTTCTCTCCTACCTCCATTT i mm10.chr15 C 0 C 0 s dasNov3.JH570235 95969 16 + 1056298 -----TCAT---TTCCTC--TCACCT i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46116078 403 - 69331447 I e otoGar3.GL873526 36314990 0 - 42659167 C e proCoq1.NW_012136747v1 5101942 398 - 6317780 I e micMur3.chr7 5737496 764 + 108171978 I e cebCap1.NW_016107750v1 1367803 340 - 1807191 I e rheMac8.chr10 84291004 553 + 92844088 I a score=-15002.000000 s hg38.chr22_GL383582v2_alt 103476 4 + 162811 AC---------AC s panTro5.chr22 28883389 4 + 37823149 AC---------AC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157995 4 + 50109623 AC---------AC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180811 4 + 4464012 AC---------AC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676580 2 - 115148730 AC----------- i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87636077 4 - 96509753 TC---------AC i macFas5.chr10 C 0 I 4 s macNem1.NW_012012688v1 7127901 4 - 13098629 TC---------AC i macNem1.NW_012012688v1 C 0 I 7 s cerAty1.NW_011999588v1 4094676 4 - 4483953 TC---------AC i cerAty1.NW_011999588v1 C 0 I 7 s chlSab2.chr19 24725316 13 + 33263144 TCTTCttcttctt i chlSab2.chr19 C 0 I 7 s manLeu1.NW_012102031v1 14006033 2 - 14338769 TC----------- i manLeu1.NW_012102031v1 C 0 I 2 s colAng1.NW_012115588v1 943998 4 + 1946073 TC---------AC i colAng1.NW_012115588v1 C 0 I 4 s mm10.chr15 82835836 1 + 104043685 A------------ i mm10.chr15 C 0 C 0 e aotNan1.NW_018512383v1 47930 0 + 5963231 C e dasNov3.JH570235 95985 0 + 1056298 C e canFam3.chr10 46116078 403 - 69331447 I e otoGar3.GL873526 36314990 0 - 42659167 C e proCoq1.NW_012136747v1 5101942 398 - 6317780 I e micMur3.chr7 5737496 764 + 108171978 I e cebCap1.NW_016107750v1 1367803 340 - 1807191 I e saiBol1.JH378157 8881789 1 - 16357246 I e calJac3.chrUn_GL286373 1971625 1 - 2117846 I e rheMac8.chr10 84291004 553 + 92844088 I a score=91643.000000 s hg38.chr22_GL383582v2_alt 103480 15 + 162811 ttttttttttttttg s panTro5.chr22 28883393 13 + 37823149 tttttttttttt--g i panTro5.chr22 C 0 C 0 s panPan2.chr22 41157999 11 + 50109623 Cttttttttt----g i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180815 12 + 4464012 ttttttttttt---g i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676582 8 - 115148730 ---ttttttt----g i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87636085 15 - 96509753 ttttttttttttttg i macFas5.chr10 I 4 C 0 s macNem1.NW_012012688v1 7127912 15 - 13098629 ttttttttttttttg i macNem1.NW_012012688v1 I 7 C 0 s cerAty1.NW_011999588v1 4094687 15 - 4483953 ttttttttttttttg i cerAty1.NW_011999588v1 I 7 C 0 s chlSab2.chr19 24725336 15 + 33263144 ttttttttttttttg i chlSab2.chr19 I 7 C 0 s manLeu1.NW_012102031v1 14006037 15 - 14338769 ttttttttttttttg i manLeu1.NW_012102031v1 I 2 C 0 s colAng1.NW_012115588v1 944006 15 + 1946073 ttttttttttttttg i colAng1.NW_012115588v1 I 4 C 0 s calJac3.chrUn_GL286373 1971626 12 - 2117846 TTTTTGTTTTTT--- i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8881790 15 - 16357246 tttttttttttttta i saiBol1.JH378157 I 1 C 0 s cebCap1.NW_016107750v1 1368143 15 - 1807191 tttttttttttttta i cebCap1.NW_016107750v1 I 340 C 0 s aotNan1.NW_018512383v1 47930 11 + 5963231 -ttttttttttt--- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36314990 13 - 42659167 --ttttttttttttg i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82835837 14 + 104043685 -TTTTCTTTCATTTG i mm10.chr15 C 0 I 426 e dasNov3.JH570235 95985 0 + 1056298 C e canFam3.chr10 46116078 403 - 69331447 I e proCoq1.NW_012136747v1 5101942 398 - 6317780 I e micMur3.chr7 5737496 764 + 108171978 I e rheMac8.chr10 84291004 553 + 92844088 I a score=926594.000000 s hg38.chr22_GL383582v2_alt 103495 105 + 162811 agatagggtctcgctctgtcactcaTTCATCAagccaaagagtttgaggttgcagtgagctttgattgtgccactgtactcATagtggaacaatcagagctcact s panTro5.chr22 28883406 105 + 37823149 agatagggtctcactctgtcactcaTTCATCAagccaaagagtttgaggttgcagtgagctttgattgtgccactgtactcATagtggagcaatcagagctcact i panTro5.chr22 C 0 C 0 s panPan2.chr22 41158010 105 + 50109623 agacagggtctcactctgtcactcaTTCATCAagccaaagagtttgaggttgcagtgagctttgattgtgccactgtactcATagtggagcaatcagagctcact i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180827 105 + 4464012 agatagggtctcgctctgtcactcaTTCATCAagccgaagagtttgaggttgcagtgagctttgattgtgccactgtactcATaggggagcaatcagagctccct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676590 105 - 115148730 agatagggtctcgctctgtcactcaTTCATCAagccaaagagtctgaggttgcagtgagctttgattgtgccactgtactcATagtggagcaatcagagctcact i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87636100 105 - 96509753 agacagggtctcactctgtccctcattcatcgagccaaagagtttgaggttgcagtgagctttgattgtgccactgtactcatagtggagcaatcagagctcact i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7127927 105 - 13098629 agacagggtctcactctgtccctcattcatcgagccaaagagtttgaggttgcagtgagctttgattgtgccactgtactcatagtggagcaatcagagctcact i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4094702 105 - 4483953 agacagggtctcactctgtccctcattcatcgagccaaagagtttgaggttgcagtgagctttgattgtgccactgtactcatagtggagcaatcagagctcact i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24725351 105 + 33263144 agacagggtctcactctgtccctcattcatcgagccggagagtttgaggttgcagtgagctttgattgtgccactgtactcatagtggagcgatcagagctcact i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14006052 105 - 14338769 agacagggtctcactctgtccctcaTTCAtcgagccaaagagtttgaggttgcagtgagctttgattgtgccactgtactcATagtggagcaatcagagctcact i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 944021 103 + 1946073 agacagggtctcactctgtccctcattcatcgagcc--agagtttgaggttgcagtgagctttgattgtgccactgtactcatagtggagcaatcagagctcact i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1971638 103 - 2117846 AGACAGGGTCTCACTCTGCCACTCATTCATCCAGCC--AGAGTTTCAGGTTGCAGTGAGCTTTGATTATACCTCTATACTCAcagtaaagcaatcagaactcact i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881805 105 - 16357246 agacaggttctcactctgtcgctcaTTCATCCagccaaagagtttgaggttgcagtgagctttaattataccgctatactcAcagtggagcaatcagaactcact i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1368158 105 - 1807191 agacagggtctcactctgtcactcattcatccagccaaagagtttgaggttgcagtgagctttgattataccgctatactcacagtggagcaatcagaactcact i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 47941 105 + 5963231 agacagggtctcactctgtcactcaTTCATCCagccaaagagtttgaggttgcagtgagctttgattatactgctatactcAcagtggagcaatcagaactcact i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36315003 55 - 42659167 agccagagtttcactatgtggctc---------tcggtagagt-----gctgtggcg------------------------------------tcacagctcaca i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82835851 426 + 104043685 I e dasNov3.JH570235 95985 0 + 1056298 C e canFam3.chr10 46116078 403 - 69331447 I e proCoq1.NW_012136747v1 5101942 398 - 6317780 I e micMur3.chr7 5737496 764 + 108171978 I e rheMac8.chr10 84291004 553 + 92844088 I a score=745149.000000 s hg38.chr22_GL383582v2_alt 103600 67 + 162811 gcaacctcaaattcctgggctagaggaatcctcttgcctctacttccttagtagctgggaccacagg s panTro5.chr22 28883511 67 + 37823149 gcaacctcaaattcctgggctagaggaatcctcttgcctctacttccttagtagctgggaccacagg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41158115 67 + 50109623 gcaacctcaaattcctgggctagaggaatcctcttgcctctacttccttagtagctgggaccacagg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180932 67 + 4464012 gcaacctcaaattcctgggctagaggaatcctcttgcctctacttccttagtagctgggaccacagg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676695 67 - 115148730 gcaatctcaaattcctgggctagaggaatcctcttgcctctacttccttagtagctgggaccactgg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84291557 67 + 92844088 gcaacctcaaattcttgggctagaggaatcctcttgcttctatttccttagtagctgagaccacagg i rheMac8.chr10 I 553 C 0 s macFas5.chr10 87636205 67 - 96509753 gcaacctcaaattcttgggctagaggaatcctcttgcttctatttccttagtagctgagaccacagg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7128032 67 - 13098629 gcaacctcaaattcttgggctagaggaatcctcttgcttctatttccttagtagctgagaccacagg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4094807 67 - 4483953 gcaacctcaaattcttgggctagaggaatcctcttgcttctatttccttagtagctgagaccacagg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24725456 67 + 33263144 gcaacctcaaattcctgggctagaggaatcctcttgcttctatttccttagtagctgagaccacagg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14006157 67 - 14338769 gcaacctcaaattcttgggctagaggaatcctcttgcttctatttccttagtagctgagaccacagg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 944124 67 + 1946073 acaacctcaaatttctgggctagaggaatcctcttgcttctacttccttactagctaggactacagg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1971741 67 - 2117846 gcaacctcaaatgcctgggctagcggaatcctcttgcctctacttccttagtagctgggaccatagg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881910 67 - 16357246 gcaacctctaattcctgggctagtggaatcctcttgcctctacttccttagtagctgggaccacagg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1368263 67 - 1807191 gcaacttctaattccttggctagcggaatcctcttgcctccacttccttagtagctgggaccatagg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 48046 67 + 5963231 gcaacctcaaattcctgggctagcggaatcctcttgcctctacttccttagtagctgggaccatagg i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36315058 67 - 42659167 gcaacctcagactcttgggcttaaacgattctcttgcctcagcctctggagtagctgggactactgg i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82835851 426 + 104043685 I e dasNov3.JH570235 95985 0 + 1056298 C e canFam3.chr10 46116078 403 - 69331447 I e proCoq1.NW_012136747v1 5101942 398 - 6317780 I e micMur3.chr7 5737496 764 + 108171978 I a score=1514339.000000 s hg38.chr22_GL383582v2_alt 103667 152 + 162811 tgcataccactgcacttggctgattta----------ttttttgt---agagatggcatctcactttgtt------gcccaagctggtctca-----------------------------------aactcctg----ggcttagg----caatc----------------ctcctacctca---------------------gcctcctgaagtgat------gggattacagatgtgag------ccaccatg--------cccaggc s panTro5.chr22 28883578 145 + 37823149 tgcataccactgcacttggctgattta----------ttttttgt---agagatggcatctcactttgtt------gcccaagctggtctca-----------------------------------aactcctg----ggcttagg----caatc----------------ctcctacctca---------------------gcctcctaaagtgat------gggattacagatgtga-------------TG--------CCCAGGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41158182 145 + 50109623 tgcataccactgcacttggctgattta----------ttttttgt---agagatggcatctcactttgtt------gcccaagctggtctca-----------------------------------aactcctg----ggcttagg----caatc----------------ctcctacctca---------------------gcctcctaaagtgat------gggattacagatgtga-------------TG--------CCCAGGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3180999 152 + 4464012 tgcataccactgcacttggctgattta----------ttttttgt---agagacggcatctcactttgtt------gcccaagctggtctca-----------------------------------aactcctg----ggcttagg----caatc----------------ctcctaccaca---------------------gcctcctaaagtgat------gggattacagatgtgag------ccaccatg--------cccaggc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676762 152 - 115148730 tgcacaccactgcacttggctaattta----------ttttttgt---agagatggcatctcactttgtt------gcccaagctggtctca-----------------------------------aactcctg----ggcttagg----caatc----------------ctcccacctca---------------------gcctcctaaagtgat------gggattacaggtgtgag------ccaccatg--------cccagcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84291624 152 + 92844088 tacataccactgcacttggctaattta----------ttttttgt---agagacagcatctcactttgtt------gctcaagcaggtctca-----------------------------------aactcctg----ggcttagg----caatc----------------ctcccacctca---------------------gcctcctaaagtgat------gggattacaggtgtgag------ccaccatg--------ccaagcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87636272 152 - 96509753 tacataccactgcacttggctaattta----------ttttttgt---agagacagcatctcactttgtt------gctcaagcaggtctca-----------------------------------aactcctg----ggcttagg----caatc----------------ctcccacctca---------------------gcctcctaaagtgat------gggattacaggtgtgag------ccaccatg--------ccaagcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7128099 152 - 13098629 tacataccactgcacttggctaattta----------ttttttgt---agagacagcatctcactttgtt------gctcaagcaggtctca-----------------------------------aactcctg----ggcttagg----caatc----------------ctcccacctca---------------------gcctcctaaagtgat------gggattacaggtgtgag------ccaccatg--------ccaagcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4094874 152 - 4483953 tacataccactgcacttggctaattta----------ttttttgt---agagacagcatctcactttgtt------gctcaagcaggtctca-----------------------------------aactcctg----ggcttagg----caatc----------------ctcccacctca---------------------gcctcctaaagtgat------gggattacaggtgtgag------ccaccatg--------ccaagcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24725523 153 + 33263144 tacataccactgcacttggctaattta----------ttttttgt---agagacagcatctcactttgtt------gcccaagcaggtctca-----------------------------------aactcctg----ggcttagg----caatc----------------ctcccacctca---------------------gcctcctaaagtgatg-----gggattacaggtgtgag------ccaccatg--------ccaagcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14006224 152 - 14338769 tacataccactgcacttggctaattta----------ttttttgt---agagacagcatctcactttgtt------gctcaagcaggtctca-----------------------------------aactcctg----ggcttagg----caatc----------------ctcccacctca---------------------gcctcctaaagtgat------ggaattacaggtgtgag------ccaccatg--------ccaagcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 944191 152 + 1946073 tacataccactgcacttggctaattta----------ttttttgt---agagatggcatctcactctgtt------gcccaagctggtctca-----------------------------------aactcctg----ggcttacg----caatc----------------ctcccacttca---------------------gcctcctaaagtgat------gggattacaggtgtgag------ccaccatg--------ccaagcc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1971808 155 - 2117846 tgcatgccactgcacctggctaattta----------ttttttgtataagagacagtgtctcactttgtt------gcccaagctggtctta-----------------------------------aactcctg----gacttagg----caatc----------------ctcccacctaa---------------------gcctcctaaagtgat------gggattataggtgtgag------ccaccatg--------cccagcc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8881977 152 - 16357246 tgcatgccactgcacctggctaattta----------ttttttgt---agggacagtgtctcactttgtt------gcccaagctggtcttc-----------------------------------aactcctg----ggcttaga----cagtc----------------ctcccacctca---------------------gcctcctaaagtgat------gggattataggtgtgag------ccaccatg--------cccagcc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1368330 153 - 1807191 tgtatgccactgcacctggctagttta---------tttttttgt---agagacagtgtttcactctgtt------gcccaagctggtctta-----------------------------------aactcctg----ggcttagg----caatc----------------ctcccacctca---------------------gcctcctaaagtgat------gggattacaggtgtgag------ccaccatg--------cccagcc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 48113 152 + 5963231 tgcatgccactgcacctggctaattta----------ttttttgt---tgagacagtgtctcactttgtt------gcccaagctggtctta-----------------------------------aactcctg----ggcttagg----caatc----------------ctcccacctca---------------------gcctcctaaagtgat------gggattataggtgtgag------ccaccatg--------cccagcc i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36315125 234 - 42659167 tgcctgccccaatacccagctattttt----------gttattat---tgtggttg----tcattgtttttagcaggcctgggctgggttcaaaccggccaacccccacgtatgtggctggtgccctaactactg----agctaggggcactgaac----------------cCCAAACCTCACTTTAACAGAAAAGAAAATGGACATTTGGAAGCAACATGACCAAGATTAGAAACGTGGAGTAATTTCAATATGTTTCTTCCTCCACTT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82836277 175 + 104043685 tgcatagca-agcattttactgaGTTACCCTAtttgttttgtttt---aaaaactgt-cctcact-tgta------gcccaggctatcctgg-----------------------------------aactaataatgcagctcagg----ctagcctgacatctaccatgtcttctgcttca---------------------gtct----aagtact------gggactataagtgtatg------ccaccatg--------cctagct i mm10.chr15 I 426 C 0 e dasNov3.JH570235 95985 0 + 1056298 C e canFam3.chr10 46116078 403 - 69331447 I e proCoq1.NW_012136747v1 5101942 398 - 6317780 I e micMur3.chr7 5737496 764 + 108171978 I a score=3107496.000000 s hg38.chr22_GL383582v2_alt 103819 286 + 162811 c-------CAAGATTTAAGTGTCT----ATTGTTAGGACAGatttca-tttatcc-----aacaccttgacaaggcagtccagttattaactccattttacaggttaagaaattcagct--taggggctaag----tga---------tg------ttatagtttcc----------------caagaagccaACTCCTACA--GATGTCTGGATGAAGGATAAAATATGACCTAAAAGATTCTATAATTATGACTCTTTGCCAA-------------------CAAAGACCG----TCCAGTAAATTCAAGAGCCTCTGTGCT--CTCCTTTGGG--CCTTGTC--TCTGGGCAGTG--TGGT-GGTCGTATA s panTro5.chr22 28883723 286 + 37823149 C-------CAAGACTTAAGTGTCT----ATTGTTAGGACAGatttca-tttatcc-----aacaccttgacaaggcagtccagttattaactccattttacaggttaagaaattcagct--taggggctaag----tga---------tg------ttatagtttcc----------------caagaagccaACTCCTACA--GATGTCTGGATGAAGGATAAAATATGACCTAAAAGATTCTATAATTATGTCTCTTTGCCAA-------------------CAAAGACCG----TCCGGTAAATTCAAGAGCCTCTGTGCT--CTCCTTTGGG--CCTTGTC--TCTGGGCAGTG--TGGT-GGTCGTATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41158327 286 + 50109623 C-------CAAGACTTAAGTGTCT----ATTGTTAGGACAGatttca-tttatcc-----aacaccttgacaaggcagtccagttattaactccattttacaggttaagaaattcagct--taggggctaag----tga---------tg------ttatagtttcc----------------caagaagccaACTCCTACA--GATGTCTGGATGAAGGATAAAGTGTGACCTAAAAGATTCTATAATTATGTCTCTTTGCCAA-------------------CAAAGACCG----TCCGGTAAATTCAAGAGCCTCTGTGCT--CTCCTTTGGG--CCTTGTC--TCTGGGCAGTG--TGGT-GGTCGTATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3181151 286 + 4464012 c-------CAAGATTTAAGTGTCT----ATTGTTAAGACAGatttca-tttatcc-----aacaccttgacaaggcagtccagttattaactccattttacaggttaagaaattcagct--taggggctaag----tga---------tg------ttatagtttcc----------------caagaagccaACTCCTACA--GATGTTTGGATGAAGGATAAAATATGACCTAAAAGATTCTATAATTATGACTCTTTGCCAA-------------------CAAAGACCG----TCTGGTAAATTCAAGAGCCTCTGTGCT--CTCCTTCGGG--CCTTGTC--TCTGGGCAGTG--TGGT-TGTCGTATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106676914 285 - 115148730 C-------CAAGATTTAAGTGTCT----GTTGTTACGACAGatttca-tttatcc-----aacaccttgacaaggcagtccagttattaaccccattttacaggttaagaaattcggct--taggggctaag----tga---------TG------TTATAGTTTCC----------------CAAGAAGCCAACTCCTACA--GATGTTTGGATGAAGGATAAAATATGACCTACAAGATTCTATAATTATGACTCTTTGCCAA-------------------CAAGGACCG----TCTGATAAATTCAAGAGCCTCTGTGCT--CTCCTTCGGG--CCTTGTC--TCTGGGCAGTG--TGGT--GTCATATA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84291776 290 + 92844088 C-------CAAGATTTAAGTGTCTATTAATTGTTAGGACAGatttca-tttatct-----aacaacttgacaaggcagtcca-ttactaaccccattttacaggttaagaaattgggct--gagggactaag----tga---------tgt-----ttatagtttcc----------------caagaagccaACTCCTACA--GACATTTGGATGAAGGATAAAATATGACCTACAAGATTCTATAATTATGACTCATTGCCAA-------------------CAAGGACCA----TCTGGTAAATTCAAGAGCCTCTGTGCT--CTCCTTCGGG--CCTTGTC--TCTGGGCAGCG--TGGT-GGTCATATA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87636424 290 - 96509753 C-------CAAGATTTAAGTGTCTATTAATTGTTAGGACAGatttca-tttatct-----aacaacttgacaaggcagtcca-ttactaaccccattttacaggttaagaaattgggct--gagggactaag----tga---------tgt-----ttatagtttcc----------------caagaagccaACTCCTACA--GACATTTGGATGAAGGATAAAATATGACCTACAAGATTCTATAATTATGACTCATTGCCAA-------------------CAAGGACCA----TCTGGTAAATTCAAGAACCTCTGTGCT--CTCCTTCGGG--CCTTGTC--TCTGGGCAGCG--TGGT-GGTCATATA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7128251 290 - 13098629 C-------CAAGATTTAAGTGTCTATTAATTGTTAGGACAGatttca-tttatct-----aacaacttgacaaggcagtcca-ttactaaccccattttacaggttaagaaattgggct--gagggactaag----tga---------tgt-----ttatagtttcc----------------caagaagccaACTCCTACA--GACATTTGGATGAAGGATAAAATATGACCTACAAGATTCTATAATTATGATTCATTGCCAA-------------------CAAGGACCA----TCTGGTAAATTCAAAAGCCTCTGTGCT--CTCCTTCGGG--CCTTGTC--TCTGGGCAGCG--TGGT-GGTCATATA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4095026 289 - 4483953 C-------CAAGATTTAAGTGTCTATTAATTGTTAGGACAGatttca-tttatct-----aacaacttgacaaggcagtcca-ttactaaccccattttacaggttaagaaattgggct--ga-ggactaag----tga---------tgt-----ttatagtttcc----------------caagaagccaACTCCTACA--GACATTTGGATGAAGGATAAAATATGACCTACAAGATTCTATAATTATGACTCATTGCCAA-------------------CATGGACCA----TCTGGTAAATTCAAGAGCCTCTGTGCT--CTCCTTCTGG--CCTTGTC--TCTGGGCAGCG--TGGT-GGTCATATA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24725676 290 + 33263144 C-------CAAGATTTAAGTGTCTATTAATTGTTAGGACAGatttca-tttatct-----aacaacttgacaaggcagtccg-ttactaaccccattttacaggttaagaaattgggct--gagggactaag----tga---------tgt-----ttatagtttcc----------------caagaagccaACTCCTACA--GACATTTGGATGAAGGATAAAATATGACCTGCAAGATTCTATAATTATGACTCATTGCCAA-------------------CAAGGACCA----TCTGGTAAATTCAAGAGCCTCTGTGCT--CTCCTTCAGG--CCTTGTC--TCTGGGCAGCG--TGAT-GGTCAAATA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14006376 290 - 14338769 C-------CAAGATTTAAGTGTCTATTAATTGTTAGGACAGatttca-tttatct-----aacaacttgacaaggcagtcca-ttactaaccccattttacaggttaagaaattgggct--gagggactaag----tga---------tgt-----ttatagtttcc----------------caagaagccaACTCCTACA--GACATTTGGATGAAGGATAAAATATGACCTACAAGATTCTATAATTACGACTCATTGCCAA-------------------CAAGGACCA----TCTGGTAAATTCAAGAGCCTCTGTGCT--CTCCTTCGGG--CCTTGTC--TCTGGGCAGCG--TGGT-GGTCATATA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 944343 286 + 1946073 C-------CAAGATTTAAGTGTCT----ATTGTTAGGACAGatttca-tttatcc-----aacaacttgacaaggcagtcca-ttattaaccccattttacaggttaagaaattgagct--gagggactaag----tga---------tgt-----ttatagtttcc----------------caggaagccaACTCCTACA--GACATTAGGATGAAGGATAAAATATGACCTACAAGATTCTATAATTATGACTCATTGCCAA-------------------CAAGGACCA----TCTGGTAAATTCAAGAGCCTCTGTGCT--CTCCTTCGGG--CCTTGTC--TCTGGGCAGCG--TGGT-GGTCATATA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1971963 296 - 2117846 C-------CAAGACTTAAGTGTCTATTGTTTGTTAGGACAGatttca-tttatct-----aacaactggacaaggcagtccagttattaatcccattttacagggtaagaaattaggct--gaggggctaagt---TGA---------TG------TTATAGTTTCC----------------CAAGAAGCTAACTCTGACA--GACATTTGGATGAAGGACAAAATATGACCTGTAAGATTCTATAATTATGACTCTTTGCCAA-------------------CAAGGACCATTTGTTTGGTAAATTCAAGAGCCTCGGTGCT--CTCCTTCGGG-CCCTTGTC--TCTGGGCAGCA--TGGT-GGTCATTTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8882129 295 - 16357246 C-------CAAGACTTAAGTGTCTATTGTTTGTTAGGACAGatttca-tttatct-----aacaactggacaaggcagttcagttattaatcccattttacagggtaagaaattgggct--gagggGCGAACT---TGA---------CA------TTATAGTTTCC----------------CAAGAAGCTAACTCTGACA--GACATTTGGATGAAGGATAAAATATGACCTGTAAGATTCTGTAATTATGATTCTTTGCCAA-------------------CAAGGACCATTCGTTTGGTAAATTCAAGAG-CTTGGTGCT--CTCCTTTGGG-CCCTTGTC--CCTGGGCAGCA--TGGT-GGTCATTTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1368483 296 - 1807191 C-------CAAGACTTAAGTGTCTATTGTTTGTTAGGACAGatttca-tttatct-----aacaactggacaaggccgtccagttattaatcccattttacagggtaagaaattgggct--gaggggctaagt---TGA---------CG------TTATAGTTTCC----------------CAAGAAGCTAACTCTGACA--GACGTTTGGATGAAGGATAAAATATGACCTGTAAGATTCTGTAATTATGACTCTTTGTCAA-------------------CAAGGACCATTTGTTTGGTAAATTCAAGAGCCTTGGTGCT--CTCCTTCGGG-CCCTTGTC--TCTGGGCAGCA--TGGT-GGTCATTTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 48265 296 + 5963231 C-------CAAGACTTAAGTGTCTATTGTTTGTTAGGACAGatttta-ttaatct-----aacaactggactaggcagtccagttattaatcccattttacagggcaagaaattgggct--gaggggctaagt---tga---------cg------ctatagtttcc----------------caagaagctaactgtgaca--gaTATTTGGATGAAGGATAAAATATGACCTGTAAGATTCTGTAATTATGACTCTTTGCCAA-------------------CAAGGACCATTTGTTTGGTAAATTCAAGAGCCTCGGCGCT--CTCCTTCGGG-CCCTTGTC--TCTGGGCAGCA--TGGT-AGTCATTTA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36315359 291 - 42659167 C-------CAATTTTTCAGTGTCTACTGACCATGGGGACAGATctca-tttatcc-----agtaacctgataaggtag-----ttattatcctcatcatacaggttaagaaactgagct--gagaggctaaataactaa---------ca------ttaaagttctc----------------caaaaagccagt----------atgtccggacaaagGATAAAATGAGATCTGTAAGATTCTTTAATCATTACCCCTTGCTAACCA---TCTCTAGTGTTGTCAAAGACTAACTATTGGGTAACTCCAAGAGCCTCT-TACG--CTCTTGTGTG---------------GGCAGCGAATGGG-AATTACATG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82836452 316 + 104043685 CTCATGTTCAATATTTTAGTGTTTGT--CCAATTGAGACAAATCTCA-TGCATCC-----AAGAACCTAAAGGGGTAGTTCTTGTATT------ATTTTTCAGGATAAGAAG-TAGGTT--AATAGGCTATA----AGA---------CA------TCAT--TTTCCaaaaaaaaaaaaaaaaaaaaaaaTCAATTCCTAGAAGAATGTGTGGATAAAGGCTAATCTGTGGTCTCTAATGTTCTGTAATTA---CTCACTGCTAACAAATTCCTCTGGTATCTTCAAAGACTG-----TTGGTAAACCCTAGGGCCTTTGTGTTCACTCCTTCTGG--------C--CCTGGGCAGCA--GAATCAATGCTACA i mm10.chr15 C 0 C 0 s canFam3.chr10 46116481 320 - 69331447 C-------CAATTTTTCAATGACAATCGACTATTAAGACCAGtctcattttatcccttaaaacaacctgatagggtagtccagttattatctccattttaccagttaaaaaattggcccgggagaggctcaa----tgagttgTTTTCCA------TTACAATTTTC----------------CAAATAGCCAATCCTTATG--AATAAT----TCAAAGATAAAATCAGACCTACAGGAGTTGGGCATCATGACCCCTTACCAACAATCTCTTCTAGTGTTTTTAAAGGCTTTCTGTTGGGTAAATTCAAGAG------------CCCCTTTTGC--TCTTGGCAACCTGGTCAGTGCACAGT-GGTTATATG i canFam3.chr10 I 403 C 0 s dasNov3.JH570235 95985 297 + 1056298 C-------CAATTTTTAAATGTCTACTGATGCT---------tctca-tttatcccttacatcaacccaatgaggcagttcaggtat---ccccatttta----ttaagaaattgagct--gagaggctgag----tga---------catgtctatcacaATTTTC-----------------AGGAAGACAAATC-TATG--AATATTGGCGTAAA-----------GATCTACATGATTCTGTAAACATGATTCTCTGCCAACAACCTCTTCTAGTGTCTTCCAAGACCATCCTTTGGGTAAATCCCAGAGCCTC-ATGTT--CTCCTTCCTATTTCTTATT--CTTGGTCAGTTC-CGAG-GACCATGTG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5101942 398 - 6317780 I e micMur3.chr7 5737496 764 + 108171978 I a score=1007525.000000 s hg38.chr22_GL383582v2_alt 104105 74 + 162811 ATAAAAGGTGGTTCTATCACATGACTTTTCTTTCAAGAGTGAGATTAGAAAAAAG--CAACAAGTAGAGGATGGGA s panTro5.chr22 28884009 74 + 37823149 ATAAAAGGTGGTTCTATCACATGACTTTTCTTTCAAGAGTGAGATTAGAAAAAAG--CAACAAGTAGAGGATGGGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41158613 74 + 50109623 ATAAAAGGTGGTTCTATCACATGACTTTTCTTTCAAGAGTGAGATTAGAAAAAAG--CAACAAGTAGAGGATGGGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3181437 74 + 4464012 ATAAAAGGTGGTTCTATCACATGACTTTTCTTTCAAGAGTGAGATCAGAAAAAAG--CAACAAGTAGAGGATGGGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106677199 74 - 115148730 ATAAAAGGTGGTTCCATCACATGACTTTACTTTCAAGAGTGAGATTAGAAAAAAG--CAACAAGTAGAGGATGGGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84292066 74 + 92844088 ATAAATGGTGGTTCCATCACATGACTTTCATTTCAAGAGTGAGATTAGAGAGAAG--CAACAAATAGAGGATGGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87636714 74 - 96509753 ATAAATGGTGGTTCCATCACATGACTTTCATTTCAAGAGTGAGATTAGAGAGAAG--CAACAAATAGAGGATGGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7128541 74 - 13098629 ATAAATGGTGGTTCCATCACATGACTTTGATTTCAAGAGTGAGATTAGAGAGAAG--CAACAAATAGAGGATGGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4095315 74 - 4483953 ATAAATGGTGGTTCCATCACATGACTTTCATTTCAAGAGTGAGATTAGAGAGAAG--CAACAAATAGAGGATGGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24725966 70 + 33263144 ATAAAAGGTGGTTCCATCACATGACTTTTATTTCAA----GAGATTAGAGAGAAG--CAACAAGTAGAGGATGGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14006666 74 - 14338769 ATAAATGGTGGTTCCATCACATGACTTTCATTTCAAGAGTGAGATTAGAGAGAAG--CAACAAATAGAGGATGGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 944629 74 + 1946073 ATAAAAGGTGGTTCCATCACATGACTTTTATTTCAAGAGTGAGATTAGAGAGAAG--CAACAAGCAGAGGATGGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1972259 74 - 2117846 ATAAAAGGTGGTTCCATCCCATGACTTCTCTTTCATGAGTGAGATTAGAAAGAAG--CAACATGTAGAGGACGGGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8882424 74 - 16357246 ATAAAAGGTGGTTCTGTCCCATGACTTTTCTTTCACGAGTGAGATTAGAAAGAAG--CAACATGTAGAGGATGGGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1368779 74 - 1807191 ATAAAAGGTGGTTCCATCCCATGACTTTTCTTTCATGAGTGAGATTAGAAAGAGG--CAACAAGTAGAGGATGGGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 48561 74 + 5963231 ATAAAAGGTGGTTCCATCCCATGACTTTTCTTTCATGATTGAGATTAGAAAGAAG--CAACACGTAGAGGATGGGA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5102340 74 - 6317780 ATAAAAGGTGGTTCCATCACAGGGGTTTTCTTCCATGAGTGAGATTAGAAAGAAG--CAAAAAGCAGAAGATGGGA i proCoq1.NW_012136747v1 I 398 I 287 s otoGar3.GL873526 36315650 74 - 42659167 ATGAAAGAGGATTCCATCACAGGAGTTTTCTTCTATGAATGAGATTAGAAAGAAG--CAAAAAGCAGAAGACAGCA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82836768 74 + 104043685 --ATAAGATGGTACCATTGTATGAGTTTTCTTTTATAAATGGGATTAAAAAGAGGGAAAAAAAGTAGAGGATGAGA i mm10.chr15 C 0 C 0 s canFam3.chr10 46116801 65 - 69331447 ATAAACAGTGGCTCTCT-------GTTCTCCTTCATGAGTAAGATCACAAAG--G--CAACACACATAGGACAGCG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 96282 72 + 1056298 ATGAAAGGTAGTTCTCTTATGTGGGTTTTCTTTCATGAGCAAAATTAGAAAGAAG--CCACAAACAGAGGATGG-- i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5737496 764 + 108171978 I a score=446910.000000 s hg38.chr22_GL383582v2_alt 104179 35 + 162811 CTGGTCAGA-TTATTGAAATTGTCTGAAAATACACC s panTro5.chr22 28884083 35 + 37823149 CTGGTCAGA-TTATTGAAATTGTCTGAAAATACACC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41158687 35 + 50109623 CTGGTCAGA-TTATTGAAATTGTCTGAAAATACACC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3181511 35 + 4464012 CTGGTTAGA-TTATTGAAATTGTCTGAAAATACACC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106677273 35 - 115148730 CTGGTCAGA-TTATTGAAATTGTCTGAAAATACACC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84292140 35 + 92844088 CTAGCCAGA-TTATTGAAATTGTCTGAAAATATACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87636788 35 - 96509753 CTAGCCAGA-TTATTGAAATTGTCTGAAAATATACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7128615 35 - 13098629 CTAGCCAGA-TTATTGAAATTGTCTGAACATATACC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4095389 35 - 4483953 CTAGCCAGA-TTATTGAAATTGTCTGAAAATATACC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24726036 35 + 33263144 CTAGCCAGA-TTATTGAAATTGTCTGAAAATATACC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14006740 35 - 14338769 CTAGCCAGA-TTATTGAAATTGTCTGAAAATATACC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 944703 35 + 1946073 CTAGCCAGA-TTATTGAAATTGTCTGAAAATATACC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1972333 36 - 2117846 CTGGCCAGATTTTTTTTAATTGTCTGAAAATATACC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8882498 35 - 16357246 CTGGCCAGA-TATTTGAAATTGTCTGAAAATATACC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1368853 35 - 1807191 CTGGGCAGA-TTTTTGAAACTGTCTGAAAATATACC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 48635 35 + 5963231 CTGGCCAGA-TTTTTGAAATTGTCTGAAAATATACC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36315724 35 - 42659167 TTAGCCAAA-TTAGTGAAATTGTCTGAAAATACATC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82836842 31 + 104043685 ATAGTTAAA-CTGTCAAA----CCTTAAAATATACC i mm10.chr15 C 0 C 0 s canFam3.chr10 46116866 35 - 69331447 TTAGCAAAG-TTATTGAAATTGTTTGAAAATATATC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 96354 31 + 1056298 TTAGCCAAA-TTATCAAAA----CTGAAAATACATG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5102414 287 - 6317780 I e micMur3.chr7 5737496 764 + 108171978 I a score=39480.000000 s hg38.chr22_GL383582v2_alt 104214 2 + 162811 AA s panTro5.chr22 28884118 2 + 37823149 AA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41158722 2 + 50109623 AA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3181546 2 + 4464012 AA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106677308 2 - 115148730 AA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84292175 2 + 92844088 AA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87636823 2 - 96509753 AA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7128650 2 - 13098629 AA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4095424 2 - 4483953 AA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24726071 2 + 33263144 AA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14006775 2 - 14338769 AA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 944738 2 + 1946073 AA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1972369 2 - 2117846 AA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8882533 2 - 16357246 AA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1368888 2 - 1807191 AA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 48670 2 + 5963231 AA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5738260 2 + 108171978 aa i micMur3.chr7 I 764 C 0 s proCoq1.NW_012136747v1 5102701 2 - 6317780 AA i proCoq1.NW_012136747v1 I 287 C 0 s otoGar3.GL873526 36315759 2 - 42659167 AA i otoGar3.GL873526 C 0 I 463 s mm10.chr15 82836873 2 + 104043685 AA i mm10.chr15 C 0 I 1 s canFam3.chr10 46116901 2 - 69331447 AA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 96385 2 + 1056298 GA i dasNov3.JH570235 C 0 C 0 a score=3289590.000000 s hg38.chr22_GL383582v2_alt 104216 234 + 162811 TGACTAAGGGATTTCAGAGTTCCCAAGTCAAATTAAGGAGC--TAAAGGCAACAACT------GGGTGTTTGCTGGTGGTTTCAGAGCTCCTTGGGGGTCCGTGGGAAAAGTGAGTCTTTATGTGGCTGGATCATTTCCTGGGGTTCTCTACAGCTAATTTGGAAG---ATCTTAAACA-GAGAATCTTCTGGAGCTGAGCAACAAGATTTTTTGTTGGCATAT--TCACCTTAAATGG-AG---------C------TTTTTT s panTro5.chr22 28884120 234 + 37823149 TGACTAAGGGATTTCAGAGTTCCCAAGTCAAATTAAGGAGC--TAAAGGCAACAACT------GGGTGTTTGCTGGTGGTTTCAGAGCTCCTTGGGGGTCCATGGGAAAAGTGAGTCTTTATGTGGCTGGATCATTTCCTGGGGTTCTCTACAGCTAATTTGGAAG---ATCTTAAACA-GAGAATCTTCTGGAGCTGAGCAACAAGATTTTTTGTTGGCATAT--TCACCTTAAATGG-AG---------C------TTTTTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41158724 234 + 50109623 TGACTAAGGGATTTCAGAGTTCCCAAGTCAAATTAAGGAGC--TAAAGGCAACAACT------GGGTGTTTGCTGGTAGTTTCAGAGCTCCTTGGGGGTCCATGGGAAAAGTGAGTCTTTATGTGGCTGGATCATTTCCTGGGGTTCTCTACAGCTAATTTGGAAG---ATCTTAAACA-GAGAATCTTCTGGAGCCGAGCAACAAGATTTTTTGTTGGCATAT--TCACCTTAAATGG-AG---------C------TTTTTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3181548 234 + 4464012 TGACTATGGGATTTCAGAGTTCCCAAGTCAAATTAAGGAGC--TAAAGGCAACAACT------GGGTGTTTGCTGGTGGTTTCAGAGCTCCTTGGGGGTCCACGGGAAAAGTGAGTCTTTATGTGGCTGGATCATTTCCTGGGGTTCTCTACAGCTAATTTGGAAG---ATCTTAAACA-GAGAATCTTCTGGAGCTGAGCGACAAGATTTTTTGTTGGCATAT--TCACCTTAAATGG-AG---------C------TTTTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106677310 235 - 115148730 TGACTAACGGATTTCAGAGTTCCCAAGTCAAATTAAGGAGCTATAAAGGCAACAACT------GGGTGTTTGCTGGTGGCCTCAGAGCTCCTTGGGGGTCCACGGGAAAGGTGAGTCTTTATGTGGCTGGATCATTTCCTGGGGTTCTCTACAGCTAATTTGTAAG---CTCTTAAACA-GAGAATCTTCTGGAGCTGAGCAACAAGA--TTTTGTTGGCATAT--TCACCTTAAATTG-AG---------C-----TTTTTTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84292177 232 + 92844088 TGACTAAGGGATTTCAGAGTTCCCAAGTCAAATTAAGGAGC--TAAAGGCAACAACT------GGGTGTTTGCTGGTGGTCTCAGAGCTCCTTGAGGGTCCACGGGAAAAGTGAGTCTTTATGTGGCTAGATCATTTCCTGGGGTTCTCTAGAGCTAATTTGGAAG---ATCTTAAACA-GATAATCTTCTGGAGCTGAGCAACAAGA--TTTTGTTGGCCTAT--TCACCCTAAATGG-AA---------C------TTTTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87636825 232 - 96509753 TGACTAAGGGATTTCAGAGTTTCCAAGTCAAATTAAGGAGC--TAAAGGCAACAACT------GGGTGTTTGCTGGTGGTCTCAGAGCTCCTTGAGGGTCCACGGGAAAAGTGAGTCTTTATGTGGCTGGATCATTTCCTGGGGTTCTCTAGAGCTAATTTGGAAG---ATCTTAAACA-GATAATCTTCTGGAGCTGAGCAACAAGA--TTTTGTTGGCCTAT--TCACCCTAAATGG-AA---------C------TTTTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7128652 232 - 13098629 TGACTAAGGGATTTCAGAGTTCCCAAGTCAAATTAAGGAGC--TAAAGGCAACAACT------GGGTGTTTGCTGGTGGTCTCAGAGCTCCCTGAGGGTCCACGGGAAAAGTGAGTCTTTATGTGGCTGGATCATTTCCTGGGGTTCTCTAGAGCTAATTTGGAAG---ATCTTAAACA-GATAATCTTCTGGAGCTGAGCAACAAGA--TTTTGTTGGCCTAT--TCACCCTAAATGG-AA---------C------TTTTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4095426 232 - 4483953 TGACTAAGGGATTTCTGAGTTCCCAAGTCAAATTAAGGAGC--TAAAGGCAACAACT------GGGTGTTTGCTGGTGGTCTCAGAGCTCCTTGAGGGTCCACGGGAAAAGTGAGTCTTTATGTGGCTGGATCATTTCCTGGGGTTCTCTAGAGCTAATTTGGAAG---ATCTTAAACA-GATAATCTTCTGGAGCTGAGCAACAAGA--TTTTGTTGGCCTAT--TCACCCTAAATGG-AA---------C------TTTTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24726073 232 + 33263144 TGACTAAGGGATTTCAGAGTTCCCAAGTTAAATTAAGGAGC--TAAAGGCAACAACT------GGGTGTTTGCTGGTGGTCTCAGAGCTCCTTGAGGGTCCACGGGAAAAGTGAGTCTTTATGTGGCTGGATCATTTCCTGGGGTTCTCTAGAGCTAATCTGGAAG---ATCTTAAACA-GATAATCTTCTGGAGCTGAGCAACAAGA--TTCTGTTGGCCTAT--TCACCCTAAATGG-AA---------C------TTTTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14006777 232 - 14338769 TGACTAAGGGATTTCTGAGTTCCCAAGTCAAATTAAGGAGC--TAAAGGCAACAACT------GGGTGTTTGCTGGTGGTCTCAGAGCTCCTTGAGGGTCCACGGGAAAAGTGAGTCTTTATGTGGCTGGATCATTTCCTGGGGTTCTCTAGAGCTAATTTGGAAG---ATCTTAAACA-GATAATCTTCTGGAGCTGAGCAACAAGA--TTTTGTTGGCCTAT--TCACCCTAGATGG-AA---------C------TTTTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 944740 233 + 1946073 TGTCTAAGGGATTTCAGAGTTCCCAAGTCAAATTAAGGAGC--TAAAGGCAACAACT------GGGTGTTTGCTGGTGGTCTCAGAGCTCCTTGAGGGTCCACGGGAAAGGTGAGTCTTTATGTGGCTGGATCATTTCCTAGGGTTCTCTAGAGTTAATTTGGAAG---ATCTAAAACA-GATAATCTTCTGGAGCTGAGCAACAAGA--TTTTGTTGGCCTAT--TCACCCTAAATGG-AA---------C-----TTTTTTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1972371 222 - 2117846 TGACTAAGGGATTTCAGAATTGCCAAGTCAAATTAAGG-------AAGGCAACAACT-------ATTGTTTGCTGGTGGTCTCAGAGCTCCTTGGGGGTCCATGGGAAAGGTTAGTCTTTATGTGGCTGGATCATTTCCTGGGATTCTCTAGAGCTAATTTGGAAG---ATCTTAA-----ACAGTGTTCTGGAGCTGAGCAACAAGA--TTTTGTTAGTATAT--TCACCTTAAACGG-AA---------C------TTTTTT i calJac3.chrUn_GL286373 C 0 I 8 s saiBol1.JH378157 8882535 229 - 16357246 TGACTAAGGGATTTCAGAATTCCCAAGTTAAATTAAGGAAG--TAAAGGCAACAACT-------AATGTTTGCTGGTGGTCTCAGAGCTCCTTGGGGGTCCACGGGAAAGGTTAGACTTTATGTGGCTGGATCATTTCCTGGGGTTCTCTAGAGCTAATCTGGAAG---ATCTTAAAC---ACAGCGTTTTAGAGTTGAGCAACAAGA--TTTTGTTGGCATAT--TCACCTTAAACAG-AA---------C------TCTTCC i saiBol1.JH378157 C 0 I 8 s cebCap1.NW_016107750v1 1368890 238 - 1807191 TGACTAAGGGATTTCAGAATTCCCAAGTCAAATTAAGGAAG--TAAAGGCAACAACT-------AGTGTTTGCTGGTGGTCTCAGAGCTCCTTGGGGGTCCACGGGAAAGGTTAGACTTTATGTGGCTGGATCATTTCCTGGGGTTCTCTAGAGCTAATTTGGAAG---ATCTTAAAC---ACAGCGTTCTGGAGCTGAGCAACAAGA--TTTTGTTGGTATAT--TCACCTTAAACGA-ACTCtttttttt------tttttt i cebCap1.NW_016107750v1 C 0 I 8 s aotNan1.NW_018512383v1 48672 228 + 5963231 TGACTAAGGGATTTCAGAATTCCCAAGTCAAATTAAGGAAG--TAAAGGCAACAACT-------AGTGTTTGCTGGTGGTCTCAGAGCTCCTTGGGGGTCCACGGGAAAGGTTAGTCTTTATGTGGCTGGATCATTTCCTGCGGTTCTCTAGAGCTAATTTGGAAG---ATCTTAAGC---ACAGCG-TCTGGAGCTGAGCAACAAGA--TTTTGTTGGTATAT--TCACCTTAAACGG-AA---------C------TCTTTT i aotNan1.NW_018512383v1 C 0 I 25 s micMur3.chr7 5738262 228 + 108171978 tgattaaGGGATTTCAGAGTTCTCAAGTCAAATTAAGGAGC--AGAGGGCAACAACT-------GGTGTTTGCTGGTCATGTCAGAGCTCCCTGAGGGGTCATGGGGAAAGTCTG----TGTGCAGCTGGATCATTTCCTAGAGTTTTCTAGAACTAATTTGGAAG---GTCTTGAACATAAGAGTTTTCTAAAGCTGAGCAACAAGA--TCTTGTTGGCATAT--TGACTTTAAATGG-AA---------C------TCTCTT i micMur3.chr7 C 0 I 6 s proCoq1.NW_012136747v1 5102703 228 - 6317780 TGACTAAGGGATTTCAGAGTTCCCAAGTCAAATTAAGGAGG--AGAGGGCAACAATT-------GGTATTTGCTGGTCATCTCAGAGCTCCATGAGGGGCCATGGGGAAAGTGTG----TGTGTGGCAGGACCATTTCCTGGGGTTCTCTAGAACTAATTTGGAAG---GTCTTGAACGTAAGAGTCTTCTAAAGCTGAGCAACAAGA--TCTTGTTGGCATAT--TCACTTTAAATGG-AA---------C------TCTTTT i proCoq1.NW_012136747v1 C 0 I 4 s otoGar3.GL873526 36316224 223 - 42659167 TGACTGAGGGATTTCAGAGTTCC-----CAAATTAAGGAGC--TCAAGACAACAAAT-------GGTGTTTGCTGGTCATCTCAGAGCTCCTTGAGGGGCCGTGGGGAAAGTAAG----TGTGTGGCTGGACCATTTCCTGGAGCTCTCTAGAACTAGTTTAGAAG---GTCTCGAATGTAAAAGTCTTCTCAAGCTGGGCAACAAGA--TCTTGTTGGTATAT--TCACCTTAAATGG-AA---------C------TCTCTT i otoGar3.GL873526 I 463 I 4 s mm10.chr15 82836876 176 + 104043685 GAACTAAGAGAT--------------------CCAAGGAGC--CAAGGGCCATACTT-------GGTACTTACTAATAA-------------GGAAGTACCACAGG--------------GTGT---------ATTTTTCTGGATTTTCTAGAGTTTATCTAGTAA---GGCTTGAACC---TGGTCTT-TAGAATTGAACTGTAATG--TCTTGTC--CATAA--CCACCTTAATAGT-TC---------CCTCCCCTTTTTT i mm10.chr15 I 1 C 0 s canFam3.chr10 46116903 215 - 69331447 CAACTATGGCATTTCAGAATTTCCAAGTCAAATGAAAGAGC--TAAAGGCAACAAAT-------GATGTTTGCTGGTGGTCTCAGAG-TCTCTGAGGGCCTAGGGTGTCTGTGAG------------------ATTTCCTGGGGTTCCCTAGAGTTAATCAGGAAGTTAATTCCAAATG---TAGTCTTCTAAAACTCACCAACAAAA--TCTTATTGGCATGTTATCACCATAAATGG-AA---------C------CTTCTT i canFam3.chr10 C 0 I 5 s dasNov3.JH570235 96387 214 + 1056298 TGACTAAGGGATTTCAGAATTTCCAAGTCAAATTAAGGAGC--TAAAGGCAAATGCTTTCAATGGGTATTTGACAGTGGTCTAGCAGCCCCTTGAGGCCTCGAGGGAGA-----------ATGT----GGATCATTTCCCCATGTTTTCTACAGCTGACTTAGAAG---GTTTTGAAAA-----------GGAACTTGAGTAACAGTA--TCTTGTTGGCATGA--TCACCTTAAATGGCAA---------C------TTTTTT i dasNov3.JH570235 C 0 I 3 a score=979120.000000 s hg38.chr22_GL383582v2_alt 104450 86 + 162811 CCA-----------AAGGTGG-GAAGGGATGAGGTAGGTCTGAGAGAACAGAATGC------------------------------------------------------------------------TGGGTCAGCA----------AGTTAGTGA-------------------GATTCCA-----TTATTGG----------------GAG----------------------------------------------ATGATT s panTro5.chr22 28884354 86 + 37823149 CCA-----------AAGGTGG-GAAGGGATGAGGTAGGTCTGAGAGAACAGAATGC------------------------------------------------------------------------TGGGTCAGCA----------AATTAGTGA-------------------GATTCCA-----TTATTGG----------------GAG----------------------------------------------ATGATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41158958 86 + 50109623 CCA-----------AAGGTGG-GAAGGGATGAGGTAGGTCTGAGAGAACAGAATGC------------------------------------------------------------------------TGGGTCAGCA----------AATTAGTGA-------------------GATTCCA-----TTATTGG----------------GAG----------------------------------------------ATGATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3181782 86 + 4464012 CCA-----------AAGGTGG-GAAGGGATGAGGTAGGTCTGAGAGAACAGAATGC------------------------------------------------------------------------TGGGTCAGCA----------AATTAGTGA-------------------GATTCCA-----TTATTGG----------------GAG----------------------------------------------ATGATT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106677545 86 - 115148730 CCA-----------AAGGTGG-GAAGGGATGAGGTAGGTGTGAGAGAACAGAATGC------------------------------------------------------------------------TGGGTCAGCA----------AATCAGTGA-------------------GATTCCA-----TTGTTGG----------------GAG----------------------------------------------ATGATT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84292409 86 + 92844088 CCA-----------AAGGCGG-GAAGGGACGAGGTAGGTCTGAGAGAACAGAATGC------------------------------------------------------------------------TGGGTCAGCA----------AATCAGTGA-------------------GATTCCA-----TTGTTGG----------------GAG----------------------------------------------ATGATT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637057 86 - 96509753 CCA-----------AAGGCGG-GAAGGGACGAGGTAGGTCTGAGAGAACAGAATGC------------------------------------------------------------------------TGGGTCAGCA----------AATCAGTGA-------------------GATTCCA-----TTGTTGG----------------GAG----------------------------------------------ATGATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7128884 86 - 13098629 CCA-----------AAGGCGG-GAAGGGACGAGGTAGGTCTGAGAGAACAGAATGC------------------------------------------------------------------------TGGGTCAGCA----------AATCAGTGA-------------------GATTCCA-----TTGTTGG----------------GAG----------------------------------------------ATGATT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4095658 86 - 4483953 CCA-----------AAGGCGG-GAAGGGACGAGGTAGGTCTGAGAGAACAGAATGC------------------------------------------------------------------------TGGGTCAGCA----------AATCAGTGA-------------------GATTCCA-----TTGTTGG----------------GAG----------------------------------------------ATGATT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24726305 86 + 33263144 CCA-----------AAGGCAG-GAAGGGACGACGTAGGTCTAAGAGAACAGAATGC------------------------------------------------------------------------TGGGTCAGCA----------AATCAGTGA-------------------GATTCCA-----TTGTTGG----------------GAG----------------------------------------------ATGATT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007009 86 - 14338769 CCA-----------AAGGCGG-GAAGGGACGAGGTAGGTCTGAGAGAACAGAATGC------------------------------------------------------------------------TGGGTCAGCA----------AATCAGTGA-------------------GATTCCA-----TTGTTGG----------------GAG----------------------------------------------ATGATT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 944973 86 + 1946073 CCA-----------AAGGCAG-GAAGGGATGAGGTAGGTCTGAGAGAACAGAATGC------------------------------------------------------------------------TGGGTCAGCA----------GATCAGTGA-------------------GATTCCA-----TTGTTGG----------------GAG----------------------------------------------ATGATT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1972601 86 - 2117846 CCA-----------AAGGAGG-GATGAGATGAGGTAGGTCTGCGAGAATAGAATCC------------------------------------------------------------------------TGGATCAGTA----------AATCAGTGA-------------------GATTCTA-----TTGCTGG----------------GAG----------------------------------------------ATGCTG i calJac3.chrUn_GL286373 I 8 C 0 s saiBol1.JH378157 8882772 97 - 16357246 CCACCCCCCTCCCCAAGGAGG-GATGAGATGAGGTAGGTCTGAGAGAATAGAATCC------------------------------------------------------------------------TGGGTCAGCA----------AATCAGTGA-------------------GATTCCC-----CTGCTGG----------------GAG----------------------------------------------ATGGTG i saiBol1.JH378157 I 8 C 0 s cebCap1.NW_016107750v1 1369136 86 - 1807191 CCA-----------AAGGAGG-GATGAGATGAGGTAGGTCTGAGAGAATAGAATCC------------------------------------------------------------------------TGGATCAGCA----------AATCAGTGA-------------------GATTCCA-----TTGCTGG----------------GAG----------------------------------------------ATGGTG i cebCap1.NW_016107750v1 I 8 C 0 s micMur3.chr7 5738496 85 + 108171978 CTA-----------AAGGAGG-GATAGGATGAGGTGGGTCTGGGAGAATAGAATGC------------------------------------------------------------------------TGGGTCAGCA-----------ATCACTGA-------------------GATGCCA-----TTGCTGG----------------GAG----------------------------------------------ATGATT i micMur3.chr7 I 6 I 393 s proCoq1.NW_012136747v1 5102935 85 - 6317780 CTA-----------AAGGAGG-GATAAGATGAGGTGGGTCTGGGAGAACAGAATGC------------------------------------------------------------------------AGGGTCAGCA-----------ATCAGTGA-------------------GACGCCA-----TTGTTGG----------------GAG----------------------------------------------ATGATT i proCoq1.NW_012136747v1 I 4 I 285 s otoGar3.GL873526 36316451 81 - 42659167 CCA-----------AAGGAGG-GATAAGATGAGGTAGGTCTGGCAG---AGAATTC------------------------------------------------------------------------TGGGTCAGCA-----------ATCAGTGA--------------------ATTCCA-----CTCCTAG----------------GAG----------------------------------------------ATGATT i otoGar3.GL873526 I 4 C 0 s mm10.chr15 82837052 60 + 104043685 ---------------ATAAGA-GGTGGGACAATATAGGTCTGGAAGGAAACAATGC------------------------------------------------------------------------CAG-----------------AATTACCAA-------------------GA----------------------------------------------------------------------------------AGAATT i mm10.chr15 C 0 C 0 s canFam3.chr10 46117123 229 - 69331447 CCA-----------AAGGAGGTGGTGGGATGCAGTGGATCTGTGAGAATGGAATTCCCTTGCTGGAGAGATAATATCCCTGCAAGTGATTTGCTTTAATTAAGAAAGGGTGTCTGAgggcagcccgggtggctcagcg----------gtttagtgccgccttcagcccagggcatgatcctggagatctgcagg----------------gagcctgcttctctctctgcttctctctctttcttgctgtctgtctctcatgaat i canFam3.chr10 I 5 I 11 s dasNov3.JH570235 96604 99 + 1056298 CCA-----------AAGGAGA-GATGGG-------------TGGAGAATGCAATGC------------------------------------------------------------------------TGGGTCAGCAATCAATGAAAAACCAATGA-------------------GATTCCA-----TTGCTGGAGAGGCAGCTTCCTTAGAG----------------------------------------------GTGATT i dasNov3.JH570235 I 3 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I a score=1177903.000000 s hg38.chr22_GL383582v2_alt 104536 132 + 162811 TGCTTCAATGAAGA----------------------------------ACGGTTTCTGTGGCACTGCTAA----AACCCTCGCCCTGCCAGGAGGCGAAACTAAAACATTAGTAGTTGATACAGATA-CTATCAAC-----------------------------------------------------AACCCC----------GGCCGCC-TTGCACAATGTTCCTCAGGTCT s panTro5.chr22 28884440 132 + 37823149 TGCTTCAATGAAGA----------------------------------ACGGTTTCTGTGGCACTGCTAA----AACCCTCGCCCTGCCAGGAGGCGAAGCTAAAACACTAGTAGTTGATACAGATA-CTATCAAC-----------------------------------------------------AACCCC----------GGCTGCC-TTGCACAATGTTCCTCAGGTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159044 132 + 50109623 TGCTTCAATGAAGA----------------------------------ACGGTTTCTGTGGCACTGCTAA----AACCCTCGCCCTGCCAGGAGGCGAAGCTAAAACACTAGTAGTTGATACAGATA-CTATCAAC-----------------------------------------------------AACCCC----------GGCTACC-TTGCACAATGTTCCTCAGGTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3181868 132 + 4464012 TGCTTCAATGAAGA----------------------------------ACGGTTTCTGTGGCACTGCTAA----AACCCTCGCCCTGCCAGGAGGCGAAGCTAAAACATTAGTAGTTGATACAGATA-CTATCAAC-----------------------------------------------------AACCCC----------GGCTGCC-TTGCACAATGTTCCTCAGGTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106677631 130 - 115148730 TGCTTCAATGAAGC-------------------------------------GTTTCTGTGGCACTGCTAA----AACCCTCGCCCTGCCAGGAGACGAAGCTAAAACATTAGTAGTTGATACAGATACCTATCAAC-----------------------------------------------------AACCCC----------GGCTGCC-TTGCACAATGTTCCTCAGGTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84292495 133 + 92844088 TGCTTTAATGAAGA----------------------------------AGGGTTTCTGCGGCACTGCTAA----AAGCCTTGCCCTGCCAGGAGGTGAAGCTAAAACATCAGTAGTTGATACAGATACCTATCAAC-----------------------------------------------------AACCAC----------GGCTGCC-TTGCACAACGATCCTCAGGTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637143 133 - 96509753 TGCTTTAATGAAGA----------------------------------AGGGTTTCTGCGGCACTGCTAA----AAGCCTTGCCCTGCCAGGAGGTGAAGCTAAAACATCAGTAGTTGATACAGATACCTATCAAC-----------------------------------------------------AACCAC----------GGCTGCC-TTGCACAACGATCCTCAGGTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7128970 133 - 13098629 TGCTTTAATGAAGA----------------------------------AGGGTTTCTGTGGCACTGCTAA----AAGCCTTGCCCTGCCAGGAGGTGAAGCTAAAACATCAGTAGTTGATACAGATACCTATCAAC-----------------------------------------------------AACCAC----------GGCTGCC-TTGCACAACGATCCTCAGGTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4095744 133 - 4483953 TGCTTTAATGAAGA----------------------------------AGAGTTTCTGCAGCACTGCTAA----AAGCCTTGCCCTGCCAGGAGGTGAAGCTAAAACATCAGTAGTTGATACAGATACCTACCAAC-----------------------------------------------------AACCAC----------GGCTGCC-TTGCACAACGATCCTCAGGTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24726391 133 + 33263144 TGCTTTAATGAAGA----------------------------------AGGGTTTCTGCGGCACTGCTAA----GAGCCTTGCCCTGCCAGGAGGTGAAGCTAAAACATCAGTAGTTGATACAGATACCTATCAAC-----------------------------------------------------AACCAT----------GGCTGCC-TTGCACAATGATCCTCAGGTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007095 133 - 14338769 TGCTTTAATGAAGA----------------------------------AGGGTTTCTGTGGCACTGCTAA----AAGCCCTGCCCTGCCAGGAGGTGAAGCTAAAACATCAGTAGTTGATACAGATACCTACCAAC-----------------------------------------------------AACCAC----------GGCTGCC-TTGCACAACGATCCTCAGGTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945059 133 + 1946073 TGCTTTAATGAAGA----------------------------------AGGGTTTCTGCGGCACTGCTAA----AAGCCTCACCCTGCCAGGAGGTGAAGCTAAAACATCAGTAGTTGATACAGATACTTATCAAT-----------------------------------------------------AACGAC----------GGCTGCC-TTGCACAATGTTCCTCAGGTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1972687 132 - 2117846 TGCTTTAATGAGGT----------------------------------AGGGTTTCTACAGCACTGCTGA----AAGCCTTGCCCTGCCAGGAATCGAAGCTAAAATATTAGTAATTGATTCAGACAGCTATCAGC-----------------------------------------------------AACCAT----------GGCTGCC-TTGCATGAAGTTCCTCA-GTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8882869 132 - 16357246 TGCTTTAATGAGGT----------------------------------AGGGTTTCTACAGCACTGCTGA----AAGCCTTGCCCTGCCAGGAAGCGAAGCTAAAATATCAGTAATTGATTCAGACAGCTATCAGC-----------------------------------------------------AACCAT----------GGCTGCC-TTGCATGAAGTTCCTCA-GTCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1369222 132 - 1807191 TGCTTTAATGAGGT----------------------------------AGGGTTTCTACAGCACTGCTGA----AAGCCTTGCCCTTCCAGGAAGCGAAGCTAAAATATCAGTAATTGATTCAGACAGCTATCAGC-----------------------------------------------------AAACAC----------GGCTGCC-TTGCATGAAGTTCCTCA-GTCT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36316532 141 - 42659167 CCCTTTAATGA-GA----------------------------------AGAGTTCTGGCAGCACTACTAA----CAGCCATGCCTGGCCAGGAGGCAAAGCTGAAGCACCAGGGGTTTATAAAGGTATCAATCAAC-----------------------------------------------------AATCACAGTGCATAATGGCCGCC-CTGCACTGTACTCCTCAGG-CT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82837112 174 + 104043685 -----TGATGA-GA----------------------------------AAGGTTTCTGCAGCATGGTTGAAGCCAAGTCCAGCCTTGCCAGGACTT-----TAAAGCA-----ACTTTACA-AGATGCTTATCAACAATCATAGTTCAGGAAGGAAGGAGGAAGGGAGAGAGAAAAGAAGAAGAAAACAAACCAC----------GCCTGCTAATGCAGCATGTTCTTCATTTCT i mm10.chr15 C 0 I 29 s canFam3.chr10 46117363 153 - 69331447 atctttaaaaaagaaaggaaaaaaaaaaaaaaagaaagaaagaaagaaagGGTGTCTGAGGCACCAT--A----AAGCTTTGCCCTGCCATGAGGCAAAGCCAAAGCAACAGCAGTTTATAAAGATACCTCCTCAT-----------------------------------------------------AACCAT--------ATGGCTGCC-TTGCACAC-------------- i canFam3.chr10 I 11 C 0 s dasNov3.JH570235 96703 87 + 1056298 CGCTTTAATGAGGA---------------------------------GACGGTTCCTGTGGCACTGCT-A----AAGCCCAGTCCTGTCAGGGG-------TAATTTATC-----TTTATAT-GATGTTTCTCAGT-----------------------------------------------------CA-------------------------------------------- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e proCoq1.NW_012136747v1 5103020 285 - 6317780 I e micMur3.chr7 5738581 393 + 108171978 I a score=255287.000000 s hg38.chr22_GL383582v2_alt 104668 28 + 162811 CTACCAGGGATGCTTAACGCTTATCCCT s panTro5.chr22 28884572 28 + 37823149 CTACCAGGGATGCTTAACGCTTATCCTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159176 28 + 50109623 CTACCAGGGATGCTTAACGCTTATCCTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182000 28 + 4464012 CTACCAGGGATGCTTAACGCTTATCCCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106677761 28 - 115148730 CTACCAGGGATGCTTAATGCTTATCCCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84292628 28 + 92844088 CTACCAGGGATGCTTAACACTTATCGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637276 28 - 96509753 CTACCAGGGATGCTTAACACTTATCGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129103 28 - 13098629 CTACCAGGGATGCTTAACACTTATCGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4095877 28 - 4483953 CTACCAGGGATGCTTAACACTTATCGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24726524 28 + 33263144 CTACCAGGGATGCTTAACACTTATCGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007228 28 - 14338769 CTACCAGGGATGCTTAACACTTATCGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945192 28 + 1946073 CTACCAGGGATGCTTAACACTTACCCCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1972819 28 - 2117846 CTACCAAGGAGGCTTAACACTTATCCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883001 28 - 16357246 CTACCAGGGAGGCTTAACACTTATCCCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1369354 28 - 1807191 CTATCAGAGAGGCTTAACACTTATCCCT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36316673 27 - 42659167 CTACCTTGGACTC-TAACGTGTGACCCT i otoGar3.GL873526 C 0 I 270 s canFam3.chr10 46117516 13 - 69331447 ---------------AATGCTCGCTCCT i canFam3.chr10 C 0 I 6 s dasNov3.JH570235 96790 26 + 1056298 CTTTCATGGATGTTTAGCA--TAATCCT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837286 29 + 104043685 I e proCoq1.NW_012136747v1 5103020 285 - 6317780 I e micMur3.chr7 5738581 393 + 108171978 I a score=529596.000000 s hg38.chr22_GL383582v2_alt 104696 56 + 162811 GTCCTGATGTACCCTAGTGAAGGAACAAG--------TTGTCACTT-----------GGCCCACAGTGAGAGGGC s panTro5.chr22 28884600 56 + 37823149 GTCCTGATGTACCCTAGTGAAGGAACAAG--------TTGTCACTT-----------GGCCCACAGTGAGAGGGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159204 56 + 50109623 GTCCTGATGTACCCTAGTGAAGGAACAAG--------TTGTCACTT-----------GGCCCACAGTGAGAGGGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182028 56 + 4464012 GTCCTGATGTACCCTAGTGAAGGAACAAG--------TTGTCACTT-----------GGCCCACAGTAAGAGGGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106677789 56 - 115148730 CTCCTGATGTACACTAGTGAAGGAACAAG--------TTGTCACTT-----------GGCCCACAGTGAGAGGGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84292656 56 + 92844088 GTCCTGATGTACCCTAGTGAAGGAACAAG--------TCGTCACTT-----------AGCCCACAGTGAGAGGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637304 56 - 96509753 GTCCTGATGTATCCTAGTGAAGGAACAAG--------TCGTCACCT-----------AGCCCACAGTGAGAGGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129131 56 - 13098629 GTCCTGATGTACCCTAGTGAAGGAACAAG--------TCGTCACCT-----------AGCCCACAGTGAGAGGGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4095905 56 - 4483953 GTCCTGATGTACCCTAGTGAAGGAACAAG--------TCGTCACCT-----------AGCCCACAGTGAGAGGGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24726552 56 + 33263144 GTCCTGATGTACCCTAGTGAAGGAACAAG--------TCGTCACCT-----------AGCCCACAGTGAGAGGGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007256 56 - 14338769 GTCCTGATGTACCCTAGTGAAGGAACAAG--------TCGTCACCT-----------AGCCCACAGTGAGAGGGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945220 57 + 1946073 GTCCTGATGTACCCTAGTGAAGGAACAAG--------TCATCACCTA----------AGCCCACAGTGAGAGGGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1972847 56 - 2117846 GTCCTGATGCACCCTAGTGAAGGAAAAAG--------TTGTCACTT-----------GGCCCACAGTGAGAGAGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883029 56 - 16357246 GTCCTGATGCACCCGAGTGAAGGAAAAAG--------TTGTCACTT-----------GGCCCACAGTGAGAGAGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1369382 56 - 1807191 GTCCTGATGCACCCTGGTGAAGGAAAAAG--------TTGTCACTT-----------TGCCTACAGTGAGAGAGC i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46117535 62 - 69331447 ---CTACTGT--CCCGGTAGAGGAGAAAG--------TCTTCTCTTGGACAGGGCCCAGCCCACAGGGAGTGTGC i canFam3.chr10 I 6 C 0 s dasNov3.JH570235 96816 64 + 1056298 GTCGTAACTTGTCACAATAGAGGAGCAAGTATTTTTTTTAGTACCT-----------GGGCCAGGGTGAGTGTAT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837286 29 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5103020 285 - 6317780 I e micMur3.chr7 5738581 393 + 108171978 I a score=578614.000000 s hg38.chr22_GL383582v2_alt 104752 70 + 162811 TAAATAC---TAATGACT-CTGCTTCTGCCTGGGAGAG---TGTGGGGTGGGGGCGGGGGTAGCGGTAGATGGTgtt s panTro5.chr22 28884656 70 + 37823149 TAAATAC---TAATGACT-CTGCTTCTGCCTGGGAGAG---TGTGGGGTGGGGGCGGGGGTAGCGGTAGATGGTGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159260 70 + 50109623 TAAATAC---TAATGACT-CTGCTTCTGCCTGGGAGAG---TGTGGGGTGGGGGCGGGGGTAGCGGTAGATGGTGCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182084 70 + 4464012 TAAATAC---TAATGACT-CTGCTTCTGCCTGGGAGAG---TGTGGGGTGGGGGCGGGGGTAGCAGTAGATGGTgtt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106677845 73 - 115148730 TAAATACTAATAATGACT-CTGCTTCTGCCTGGGAGAG---TGTGGGGTGGGGGCAGGGGTAGCGGTAGGTGGTGTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84292712 67 + 92844088 TAAATAC---TAATGACT-CTGTTTCTGCCTGGGAGAG---TGTGGGGT---GGCGGGGGTAGGAGTAGGTGGTGTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637360 67 - 96509753 TAAATAC---TAACGACT-CTGTTTCTGCCTGGGAGAG---TGTGGGGT---GGCGGGGGTAGGAGTAGGTGGTGTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129187 67 - 13098629 TAAATAC---TAATGACT-CTGTTTCTGCCTGGGAGAG---TGTGGGGT---GGCGGGGGTAGGAGTAGGTGGTgtt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4095961 67 - 4483953 TAAATAC---TAATGACT-CTGTTTCTGCCTGGGAGAG---TGTGGGGT---GGCGGGGGTAGGAGTAGGTGGTGTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24726608 70 + 33263144 TAAATAC---TAATGACT-CTGTTTCTGCCTGGGAGAG---TGTGGGGTGGGGGCGGGGGTAGGAGTAGGTGGTGTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007312 67 - 14338769 TAAATAC---TAATGACT-CTGTTTCTGCCTGGGAGAG---TGTGGGGT---GGCGGGGGTAGGAGTAGGTGGTGTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945277 70 + 1946073 TAAATAT---TAATGACT-CTGCTTCTGCCTGGGAGAG---TGTGGGGTGGGGGCGGGGATAGGAGTAGGTAGTGTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1972903 70 - 2117846 TAAATAC---TAATGACT-CTGCTTCTGCCTGGGAGAG---TGTGGGGTTGGGGTTGGCAGTGGGGTAGGTGGTGTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883085 70 - 16357246 TAAATAC---TCATGACT-CTGCTTCTGCCTGGGAGAG---TGTGGGGTTGGGGTTGGCGGTGGGGTAGGTGGTGTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1369438 70 - 1807191 TAAATAC---TCATGACT-CTGCTTGTGCCTGGGAGAG---TGTGGGGTTGGGGTTGGTGGTGGGGTAGGTGGTGTT i cebCap1.NW_016107750v1 C 0 C 0 s mm10.chr15 82837315 57 + 104043685 TAATTGC---TGAAGACT-CTGCTTTTGCCCAAGAA----------------GCAAGTGGGAGAGGAAGGCAGTGTT i mm10.chr15 I 29 C 0 s canFam3.chr10 46117597 45 - 69331447 TAACTAC---CAATGAC---------TGCTGTGAAGGA---CGAGGGGC------------AAGAGCATGTG----- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 96880 52 + 1056298 TAAATAC---TAATGACTGTTGCTTCCACCTGTAAGGGATCCGTGGAGTGATGGC---------------------- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5103020 285 - 6317780 I e micMur3.chr7 5738581 393 + 108171978 I a score=1305952.000000 s hg38.chr22_GL383582v2_alt 104822 123 + 162811 actgagaaagccaggcaaagtggtt------gttc--agagcagagaactaagagagtgctcttggtggactgtgagtttcacagggcatggtggaggagA--CTGGCAAAGCAGCAGAGTGTGG--------------------TTCTTGAC s panTro5.chr22 28884726 123 + 37823149 ACTgagaaagccaggcaaagtggtt------gttc--agagcagagaactaagagagtgctcttggtggactgtgagtttcacagggcatggtggaggagA--CTGGCAAAGCAGCAGAGTGTGG--------------------TTCTTGAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159330 123 + 50109623 ACTgagaaagccaggcaaagtggtt------gttc--agagcagagaactaagagagtgctcttggtggactgtgagtttcacagggcatggtggaggagA--CTGGCAAAGCAGCAGAGTGTGG--------------------TTCTTGAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182154 121 + 4464012 actgtgaaagccaagcaaagtggtt------gttc--agagcagagaactaagagagtgctcttggtggactgtgagtttcacagggcatggtggaggagA--CTGGCAAAGCAGC--AGTGTGG--------------------TTCTTGAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106677918 121 - 115148730 ACTGAGAACGCCaggcaaagtggtt------gttc--agagcagagaac--agagagtgctcatggtggactgtgagtttcatagggcatggtggaggaga--ttGGCAAAGCAGCAGAGTGTGG--------------------TTCTTGAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84292779 123 + 92844088 ACTGAGAAAGCCAGGTAAAATGGCT------GTTC--AGTGCAGAGAACTAACAGAGTGCTCTTGGTGGACTGTGAGTTTCACAGGGCATAGTGCAGGCGA--TTGGCAAAGCAACAGGGTGTGG--------------------TTCTTGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637427 123 - 96509753 ACTGAGAAAGCCAGGTAAAATGGCT------GTTC--AGTGCAGAGAACTAACAGAGTGCTCTTGGTGGACTGTGAGTTTCACAGGGCATAGTGCAGGCGA--TTGGCAAAGCAACAGGGTGTGG--------------------TTCTTGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129254 123 - 13098629 actgagaaagccaggtaaaatggct------gttc--agtgcagagaactaacagagtgctcttggtggactgtgagtttcacagggcatagtgCAGGCGA--TTGGCAAAGCAACAGGGTGTGG--------------------TTCTTGAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096028 123 - 4483953 ACTGAGAAAGCCAGGTAAAATGGCT------GTTC--AGTGCAGAGAACTAACAGAGTGCTCTTGGTGGACTGTGAGTTTCACAGGGCATAGTGCAGGCGA--TTGGCAAAGCAACAGGGTGTGG--------------------TTCTTGAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24726678 123 + 33263144 ACTGAAAAAGCCAGGTAAAATGGCT------GTTC--AGTGCAGAGAACTAACAGAGTGCTCTTGGTGGACTGTGAGTTTCACAGGGCATGGTGGAGGAGA--TTGGCAAAGCAGCAGGGTGTGG--------------------TTCTTGAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007379 123 - 14338769 ACTGAGAAAGCCAGGTAAAATGGCT------GTTC--AGTGCAGAGAACTAACAGAGTGCTCTTGGTGGACTGTGAGTTTCACAGGGCATAGTGCAGGCGA--TTGGCAAAGCAACAGGGTGTGG--------------------TTCTTGAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945347 123 + 1946073 ACTGAGAAAGCCAGGTAAAATGGCT------GTTC--AGTGCAGAGAACTATCAGAGTGCTTTTGGTGGACTGTGAGTTTCACAGGACATGGTGGAGGAGA--TTGGCAAAGCAGCAGGGTGTGG--------------------TTCTTGAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1972973 121 - 2117846 ACTGAGGAAGCCAGGCAAAGTGGCT------GTTC--AGAGCAGAGAACT--AAGAGTGCTCTTGGTGGACTGTAAGGTTCATAGGGCATGGTGGGGCAGA--TTGGCAAAGCAGCAGGGTGTGG--------------------TTCTTGAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883155 124 - 16357246 ATTGAGGAAGCCAGACAAAGTGACT------GTTCAAAGAGCAGAGAACT-GAAGAGTGCTCTTGGTAGACTGTAAGGTTCATAGGGCATGGTGGAGCAGA--CTGGCAAAGCAGCAGGGTGTGG--------------------TTCTTGAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1369508 125 - 1807191 ACTGAGGAAGCCAGGCAAAGTGGCT------GTTCAAAGAGCAGAGAACTAAGAGAGTGCTCTTGGTAGACTGTACGGTTCATAGGGCATGGTGGAGCAGA--TTGGCAAAGCTGCAGGGTGTGA--------------------TTCTTGAT i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5103305 123 - 6317780 ACTGAGCGAGCCAGGCAAAGAGGCT------GTTC--AGAGTAGAGAATTAAGAGTGTGCTCTTGGTGGATTTTGAGTTTTAGAGGGCATGGTGGAAGGGC--TTAGGAAAGCCAGAAGGTACGA--------------------ATCTCTGT i proCoq1.NW_012136747v1 I 285 C 0 s mm10.chr15 82837372 119 + 104043685 AAGGAGAAAGCCAG---AAGAGGCT------GGGC--AG-GTTAAAAGTGAAGAGCGTGTTCTTGGTGGACCACAAGCTTCTGACAGCCCAGTGGGAGAGC--TTCGGAAAGCAGGAGGCTACGC--------------------ATCCTGAT i mm10.chr15 C 0 C 0 s canFam3.chr10 46117642 113 - 69331447 ---GAGAGAGCCAGGTGAAGGGGCT------GCTG--AGAGTAGAGAATT--GAGTGTGCTCTTGGTGGA-TGTGGGTTTCAGAGGGCATGA-GGAAGGGC--CTGGGAAAGC---AGGGTGTGG--------------------CCCTTGAT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 96932 150 + 1056298 ACTGAAAGTGCCAGGTGAAAGGCGTTATTGCGTTC--AGAGCA-AGAATTAAAAGTGTGCTCCAgacagattgtgagtttcagatgacacagtgaaaaagggtctgccagggcaggagggtgtggaaaattaggttagatgaggaATCTTGAC i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5738581 393 + 108171978 I a score=869176.000000 s hg38.chr22_GL383582v2_alt 104945 71 + 162811 ATGTGC----CTATTTCCCCTGCCACTCACGCTTCAAACCCCCCAAGTCACT-CTAG--TAGTGGCAGGTCCAAGTGC s panTro5.chr22 28884849 71 + 37823149 ATGTGC----CTATTTCCCCTGCCACTCACGCTTCAAACCCCCCAAGTCACT-CTAG--TAGTGGCAGGTCCAAGTGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159453 71 + 50109623 ATGTGC----CTATTTCCCCTGCCACTCACGCTTCAAACCCCCCAAGTCACT-CTAG--TAGTGGCAGGTCCAAGTGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182275 71 + 4464012 ATGTGC----CTATTTCCCCTGCCACTCACACTTCAAACCCCCCAAGTCACT-CTAG--TAGTGGCAGGTCCAAGTGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678039 75 - 115148730 ATGTGCCTATCTATTTCCCCTGCCACTCACGCTTCAAACCCCCCAAGTCACT-CTAG--TAGTGGAAGGTCCGAGTGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84292902 75 + 92844088 ATGGGCCTATCTATTTCCCCTGCCACTCATGCTTCAAACCCCTCAAGTCACT-CCAG--TAGTGGTAGGTCTGAGTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637550 75 - 96509753 ATGGGCCTATCTATTTCCCCTGCCACTCATGCTTCAAACCCCTCAAGTCACT-CCAG--TAGTGGTAGGTCTGAGTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129377 75 - 13098629 ATGGGCCTATCTATTTCCCCTGCCACTCATGCTTCAAACCCCTCAAGTCACT-CCAG--TAGTGGTAGGTCTGAGTGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096151 75 - 4483953 ATGTGCCTATCTATTTCCCCTGCCACTCATGCTTCAAACCCCTCAAGTCACT-CCAG--TAGTGGTAGGTCTGAGTGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24726801 75 + 33263144 ATGTGCCTATCTATTTCCCCTGCCGCTCATGCTTCAAACCCCTCAAGTCACT-CCAG--TAGTGGTAGGTCCGAGTGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007502 75 - 14338769 ATGTGCCTATCTATTTCCCCTGCCACTCATGCTTCAAACCCCTCAAGTCACT-CCAG--TAGTGGTAGGTCTGAGTGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945470 75 + 1946073 ATGTGCCTATCTATTTCCCCTGCTACTCATGCTTCAAACCCCTCAAGTCACT-CTAG--TAGTGGTAGGTCCGAGTGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973094 72 - 2117846 ATGTGCCTATCTATTTCTCCTGCCACTCATGCTTCAAA---CCCAAGTCACT-CCAA--TAGTGGCAACCTTGAGTGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883279 76 - 16357246 ATGTGCCTATCCATTTCTCCTGCCACTCATGCTTCAAACCCCCCAAGTCACTCCCAA--CAGTGGCAACCCCGAGTGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1369633 75 - 1807191 ATGTGCCTATCCATTTCTCCTGCCACTCATGCTTCAAACACCCCAAGTCACT-CCAA--CAGTGGCAACCCCGAGTGC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5738974 71 + 108171978 ATGTGT----CTATTTCTCCTGCCATTCACTCTTCAACCCCCCCAAGGCAAT-CCAA--TAGTGGCAGGTCTGAGTGC i micMur3.chr7 I 393 I 92 s proCoq1.NW_012136747v1 5103428 71 - 6317780 ATGTGT----CTATTTCTCCTGTCATTCACTCTTCAAATCCCCCAAGGCAAT-CCAA--TAGTGGCAGGTCTGAGTGC i proCoq1.NW_012136747v1 C 0 I 92 s mm10.chr15 82837491 71 + 104043685 GTGTGC----CGATTTCTCCTGCCAATTAATCTTCTAGCTACTTAAGTCACC-CCAA--CAGCAGTGGGCCTGGGTGC i mm10.chr15 C 0 C 0 s canFam3.chr10 46117755 71 - 69331447 ATGTGC----CCATTTCT-CTGCCAGTCACACTTCAAATTCCCCAAGTCTCT-TTGA-CTACTGGCAGGTTTGAGCGT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 97082 69 + 1056298 ATGTGC----CTATTTCTCCCACCACTCAC---TCAACTCCACTAAGTCATC-CTGATCTACTGCCAGGCCCCTGAG- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=1461177.000000 s hg38.chr22_GL383582v2_alt 105016 170 + 162811 CACA-------TGGGGAGGGCAGGCCTC------TGAGGCCTTACTGACTCAGCCCTCCCTTTGGCCGAGTTAGGTGTAGCTTCTCCACACTT-ACACAGACCTCACAGTATCCATAGACCAT-G-CCTCCCAGCA-CTTACACAAGTGCTCACTGAACATAAGGTGGGGCTGCTTTTACCTGC----TAA s panTro5.chr22 28884920 170 + 37823149 CACA-------TGGGGAGGGCAGGCCTC------TGAGGCCTTACTGACTCAGCCCTCCCTTTGGCCGAGTTAGGTGTAGCTTCTCCACACTT-ACACAGACCTCACAGTATCCATAGACCAT-G-CCTCCCAGCA-CTTACACAAGTGCTCACTGAACATAAGGTGGGGCTGCTTTTACCTGC----TAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159524 170 + 50109623 CACA-------TGGGGAGGGCAGGCCTC------TGAGGCCTTACTGACTCAGCCCTCCCTTTGGCCGAGTTAGGTGTAGCTTCTCCACACTT-ACACAGACCTCACAGTATCCATAGACCAT-G-CCTCCCAGCA-CTTACACAAGTGCTCACTGAACATAAGGTGGGGCTGCTTTTACCTGC----TAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182346 170 + 4464012 CACA-------TGGGGAGGGCAGGCCTC------TGAGGCCTTACTGACTCAGCCCTCCCTTTGGCCGAGTTAGGTGTAGCTTCTCCACACTT-ACACAGAACTCACAGTATCCATAGACCAT-G-CCTCCCAGCA-CTTACACAAGTGCTCACTGAACATAAGGTGGGGCTGCTTTTACCTGC----TAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678114 170 - 115148730 CACA-------TGGGGAGGGCAGGCCTC------TGAGGCCGTACTGACTCAGCCTTCCCTTTGGCCGAGTTAGGCGTAGCTTCTCCACACTT-ACACAAACCTCACAGTATCCACAGACCAT-G-CCTCCCAGCA-CTTACGCAAGTGCTCACTGAACATAAGGTGGGGCTGCTTTTACCTGC----TAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84292977 170 + 92844088 CACA-------TGGGGAGGGCAGGCCTC------TGAGGCCTTACTGACTCAACCTTCCCTTTGGCCGAGTTAGGCATAGCTTCTCCACACTT-ACACAGACCTCAGGGTATCCAGAGACCAT-G-CCTCCCAGCA-CTTATGCAAGTGCTCACTGAACATACCGTGGGGCTGCTTTTACCTGC----AAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637625 170 - 96509753 CACA-------TGGGGAGGGCAGACCTC------TGAGGCCTTACTGACTCAACCTTCCCTTTGGCCGAGTTAGGCATAGCTTCTCCACACTT-ACACAGACCTCAGGGTATCCAGAGACCAT-G-CCTCCCAGCA-CTTATGCAAGTGCTCACTGAACATACCGTGGGACTGCTTTTACCTGC----AAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129452 170 - 13098629 CACA-------TGGGGAGGGCAGGCCTC------TGAGGCCTTACTGATTCAACCTTCCCTTTGGCCGAGTTAGGCATAGCTTCTCCACACTT-ACACAGACCTCAGGGTATCCAGAGACCAT-G-CCTCCCAGCA-CTTATGCAAGTGCTCACTGAACATACCGTGGGGCTGCTTTTACCTGC----AAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096226 169 - 4483953 CACA-------TGGGGAGGGCAGGCCTC------TGAGGCCTTACTGACTCAACCTTCCCTTTGGCCGAGTTAGGCATAGCTTCTCCACACTT-ACACAGACCTCAGGGTATCCAGAGA-CAT-G-CCTCCCAGCA-CTTATGCAAGTGCTCACTGAACATACCGTGGGGCTGCTTTTACCTGC----AAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24726876 171 + 33263144 CACA-------TGGGGAGGGCAGGCCTC------TGAGGCCTTACTGACTCAACCTTCCCTTTGGCCAAGTTAGGCATAGCTTCTCCACACTTAACAAAGACCTCAGGGTATCCAGAGACCAT-G-CCTCCCAGCA-CTTATGCAAGTGCTCACTGAACATACCATGGGGCTGCTTTTACCTGC----AAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007577 169 - 14338769 CACA-------TGGGGAGGGCAGGCCTC------TGAGGCCTTACTGACTCAACCTTCCCTTTGGCCGAGTTAGGCATAGCTTCTCCACACTT-ACACAGACCTCAGGGTATCCAGAGA-CAT-G-CCTCCCAGCA-CTTATGCAAGTGCTCACTGAATATACCGTGGGGCTGCTTTTACCTGC----AAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945545 171 + 1946073 CACA-------TGGGGAGGGCAGGCCTCT-----TGAGGCCTTACTGACTCAATCTTCCGTTTGGCCTAGTTAGGCATAGCTTCTCCACACTT-ACACAGACCTCAGGGTATCCAGAGACCAT-G-CCTCCCAGCA-CTTATGCAAGTGCTCATTGAACATACTGTGGGGCTGCTTTTACCTGC----AAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973166 169 - 2117846 CACA-------GGAACAGGGCAGGCCTC------TGAGGTCTTACTGACTCAGCCTTCCCTTTGGCTGAGTTAGGAGCAGCTTCTCCAAGCTT---ACAGTCCTCATGGTATCCAGACATCAT-G-CCTCCCAGCA-CTTATGCAAGTGCTCAGTTAATGTAAGCTGGGGCTGCTTTTATCTGC---AAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883355 172 - 16357246 CACA-------TGAACAAAGCAGGCCTC------TGAGGCCTTACTGACTCAGCCTTCCCTTTGGCTTAGTTAGGGGCAGCTTCTCCAAGCTT---ACAGTCCTCATGGTATCCAGACACCAT-G-CCTCTCAGCA-TTTATGCAAGTGCTCAGTTAACCTAAGCTGGGGCTGCTTTTATCTGCAAAAAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1369708 170 - 1807191 CACA-------TGAACAGTGCAGTCCTC------TGAGGCCTTACTGACTCAGCCTTCCCTTTGACTGAGTTTGGGGCAGCTTCTCCAAGCTT---ACAGTGCTCATGGTATTCAGACACCAT-G-CCTCCCAGCA-TTTATGCAAGTGCTCAGTTAACCTAAGCTGGGGCTACTTTTATCTGC--AAAAA i cebCap1.NW_016107750v1 C 0 C 0 s mm10.chr15 82837562 162 + 104043685 -------------AATAGGACTTGACTCTAGGCCTGATGCCTTTCCCCCATACCCTTCCC-------AATTCAGGTA-AGCTTCTTGGTGTTC-ACACAAA-CTCACAGCATCCAGGGACCATGG-CATCATACCA-TTTACACAGGTGCTGCCTTAAGCTAAGCTACAATGCCACTGAATTGA----AAA i mm10.chr15 C 0 I 7 s canFam3.chr10 46117826 117 - 69331447 ------------------------ACCA------TGA-GCCTTCCTGACTCA----------------AGTCAGGT---GCTTCTCAGTGTCT-GCACACAGCCCACA----------------C-TCTCACAGCACCTTACACAAGTGGTGATCTAAGCAAAG--AAGGTTGCTCTTAGCTGC----AAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 97151 175 + 1056298 CACACCATTACTGGGCAGTCCAGGTCCC------AGAAGCCTTCCTGGCTCA-CCTTTTCCCTCCCCAGGTTAGGTGAAGCCTGTTGGTGCTT-ACACAGTCCCCACTGTAT-CAGATATCAT-GCCCTCACAGCA-CTTGCACA-GAGCCAATCTAATCGAAGCTACAGCTGCTTTTAGCTGT----AAG i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5103499 92 - 6317780 I e micMur3.chr7 5739045 92 + 108171978 I a score=1310022.000000 s hg38.chr22_GL383582v2_alt 105186 96 + 162811 AAACTATCCACTGGAAATTCCTTCATTCTGAAATGGTCATTGTGcatttcaatgtcta----ggaggcatctcagac----ttaacatgaacaaaatacaactc s panTro5.chr22 28885090 96 + 37823149 AAACTATCCACTGGAAATTCCTTCATTCTGAAGTGGTCATActgcatttcaatgtcta----ggaggcatctcagac----ttaacatgaacaaaatacaactc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159694 96 + 50109623 AAACTATCCACTGGAAATTCCTTCATTCTGAAGTGGTCATActgcatttcaatgtcta----ggaggcatctcagac----ttaacatgaacaaaatacaactc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182516 96 + 4464012 AAACTATCCACTAGAAATTCCTTCATTCTGAAATGGTCATActccatttcaatgtcta----ggaggcatctcagac----ttaacatgaacaaaatacaactc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678284 96 - 115148730 AAACTATCCATTGGAAATTCCTTCATTCTGAAACGGTCATActgcatttcaatgtcta----ggagacatctcagac----ttaacataaacaaaatacaactc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293147 96 + 92844088 AAACTATCCATTGGAAATTCCTTCATTCTGAAATGGTCATActgcacttgaatgtcta----ggaggcatctcagac----ataacatgaacaaaatacaactc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637795 96 - 96509753 AAACTATCCATTGGAAATTCCTTCATTCTGAAATGGTCATActgcacttgaatgtcta----ggaggcatctcagac----ataacatgaacaaaatacaactc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129622 96 - 13098629 AAACTATCCATTGGAAATTCCTTCATTCTGAAATGGTCATActgcacttgaatgtcta----ggaggcatctcagac----ataacatgaacaaaatacaactc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096395 96 - 4483953 AAACTATCCATTGGAAATTCCTTCACTCTGAAATGGTCATActgcacttgaatgtcta----ggaggcatctcagac----ataacatgaacaaaatacaactc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727047 96 + 33263144 AAACTATCCATTGGAAATTCCTTCATTCTGAAATGGTCATActgcacttgaatgtcta----ggaggcatctcagac----ataacatgaacaaaatacaactc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007746 96 - 14338769 AAACTATCCATTGGAAATTCCTTCACTCTGAAATGGTCATActgcacttgaatgtcta----ggaggcatctcagac----ataacatgaacaaaatacaactc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945716 96 + 1946073 AAACTATCCATTGGAAATTCCTTCATTCTGAAATGGTCATActgcacttgaatgtcta----ggagaaatctcagac----ttaacatgaacaaaatacaactc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973335 96 - 2117846 AAACTATCTATAGGGAATTCCTTCATTCTGAAATGGTCATActgcacttgaatgtcta----ggaggcatctcagac----ttaacgttaacaaaatacaactc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883527 96 - 16357246 AAACTATCCATAGGAAATTCCTTCATTCTGAAATGGTCAGActgcacttgaatgtcta----ggaggaatctcagac----ttaacattaacaaaatacaactc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1369878 96 - 1807191 AAACTATCCATAGGAAATTCCTTCATTCTGAAATGGTCATActgcacttgaatgtcta----ggaggcatctcagac----ttaacattaacaaaatacaactc i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5739137 100 + 108171978 AAACTATCCACTAGAAATTCCTTCATTCTGAAATGGTTATATTGcacttagatgtctaggagggaggcatcttagag----ttaacataaacaaaatacaactc i micMur3.chr7 I 92 C 0 s proCoq1.NW_012136747v1 5103591 100 - 6317780 AAACTATCCACTAGAAATTCCTTCATTCTGAAATGGTTATATTGcacttagatgtctaggagggaggcatcttagac----ttaacatgaacaaaatacaactc i proCoq1.NW_012136747v1 I 92 I 34 s mm10.chr15 82837731 96 + 104043685 AAACCATCTATTAGAAACCCTTGAA--CTGGAATTTTTGCACTTAACTT--ATAAATA----AGAAGTATCTTAGACCTAATTAACAGAGACAAGATATAAATC i mm10.chr15 I 7 C 0 s canFam3.chr10 46117943 92 - 69331447 AAACCATCCATCAG-AATTCCTTAATTCTGAGATGGTCCTActtcacctggatgtcta----agaggtatctcagac----ttaacatgaatataatacac--- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 97326 96 + 1056298 AAACTGTCCATCAGAAATCCTTTAATTCTGAAATGGCCacatttcttttggatgtcta----agagacatcttaaat----taagcatgaagaaaatatagctc i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=40280.000000 s hg38.chr22_GL383582v2_alt 105282 3 + 162811 ctg s panTro5.chr22 28885186 3 + 37823149 ctg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159790 3 + 50109623 ctg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182612 3 + 4464012 ctg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678380 3 - 115148730 ctg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293243 3 + 92844088 ctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637891 3 - 96509753 ctg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129718 3 - 13098629 ctg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096491 3 - 4483953 ctg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727143 3 + 33263144 ctg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007842 3 - 14338769 ctg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945812 3 + 1946073 ctg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973431 3 - 2117846 ctg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883623 3 - 16357246 ctg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1369974 3 - 1807191 ctg i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5739237 3 + 108171978 ctg i micMur3.chr7 C 0 I 31 s mm10.chr15 82837827 3 + 104043685 CTT i mm10.chr15 C 0 I 1 s canFam3.chr10 46118035 3 - 69331447 ccg i canFam3.chr10 C 0 I 2 s dasNov3.JH570235 97422 3 + 1056298 ctt i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5103691 34 - 6317780 I a score=162833.000000 s hg38.chr22_GL383582v2_alt 105285 20 + 162811 -aatccccaccaaacctgtt-c- s panTro5.chr22 28885189 20 + 37823149 -aatccccaccaaacctgtt-c- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159793 19 + 50109623 -aat-cccaccaaacctgtt-c- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182615 20 + 4464012 -aatccccaccaaacctgtt-c- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678383 16 - 115148730 -aatc----ccaaacctgtt-c- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293246 19 + 92844088 -aat-cccaccaaacctgtt-c- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637894 19 - 96509753 -aat-cccaccaaacctgtt-c- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129721 19 - 13098629 -aat-cccaccaaacctgtt-c- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096494 19 - 4483953 -aat-cccaccaaacctgtt-c- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727146 20 + 33263144 -aatccccaccaaacctgtt-c- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007845 19 - 14338769 -aat-tccaccaaacctgtt-c- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945815 20 + 1946073 -aatccccaccaaacctgtt-c- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973434 20 - 2117846 -aatccccatcaaacctgtt-c- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883626 20 - 16357246 -aatccccatcaaacctgtt-c- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1369977 20 - 1807191 -aatccccatcaaacctgtt-c- i cebCap1.NW_016107750v1 C 0 C 0 s mm10.chr15 82837831 19 + 104043685 -TTTCCTTACCAA--CTGTTCC- i mm10.chr15 I 1 C 0 s canFam3.chr10 46118040 20 - 69331447 -ttcccgcaccaaacctgtt-c- i canFam3.chr10 I 2 I 1127 s dasNov3.JH570235 97425 22 + 1056298 atttcctcactaaaccgttt-cc i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5103691 34 - 6317780 I e micMur3.chr7 5739240 31 + 108171978 I a score=108223.000000 s hg38.chr22_GL383582v2_alt 105305 14 + 162811 TCTTGGGAGACCCT s panTro5.chr22 28885209 14 + 37823149 TCTTGGGAGACCCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159812 14 + 50109623 TCTTGGGAGACCCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182635 14 + 4464012 TCTTGGGAGACCCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678399 14 - 115148730 TCTTGGGAGACCCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293265 14 + 92844088 TCTTGGGAGACCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637913 14 - 96509753 TCTTGGGAGACCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129740 14 - 13098629 TCTTGGGAGACCTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096513 14 - 4483953 TCTTGGGAGACCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727166 14 + 33263144 TCTTGGGAGACCTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007864 14 - 14338769 TCTTGGGAGACCTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945835 5 + 1946073 TCTTG--------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973454 14 - 2117846 TCTTGGGAGATCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883646 14 - 16357246 TCTTGGGAGATCCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1369997 14 - 1807191 TCTTGGGAGATCCC i cebCap1.NW_016107750v1 C 0 C 0 s mm10.chr15 82837850 14 + 104043685 TACTAGGGTACTCT i mm10.chr15 C 0 I 1925 s dasNov3.JH570235 97447 5 + 1056298 tcttg--------- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e canFam3.chr10 46118060 1127 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5103691 34 - 6317780 I e micMur3.chr7 5739240 31 + 108171978 I a score=419944.000000 s hg38.chr22_GL383582v2_alt 105319 54 + 162811 GGAGGAAGAACAGGTTTGGTGGTGATTCAGGAGTTGTGTTTTTCAACATTCAGG-- s panTro5.chr22 28885223 54 + 37823149 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGG-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159826 54 + 50109623 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGG-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182649 54 + 4464012 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGG-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678413 52 - 115148730 GGAGGGAGATC--TCTTGGTGGGGATTCAGGAGATGTGTTTTTCAACATTCAGG-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293279 54 + 92844088 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGG-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637927 54 - 96509753 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGG-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129754 54 - 13098629 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGG-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096527 54 - 4483953 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGG-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727180 54 + 33263144 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGG-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007878 54 - 14338769 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGG-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945840 25 + 1946073 -----------------------------GGAGTTGTGTTTTTCAACATTCAGG-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973468 54 - 2117846 GGAGGAAGAACAGATTTGGTGGGAATTTGGGAGTTGTTTTCTTCAACATTCAGG-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883660 54 - 16357246 GGAGGGAGAACAGGTTTGGTGGGGATTTAGGAGTTGCTTTCTTCAACATTCAGG-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370011 54 - 1807191 GGAGGGAGAACGGGTTTGGTGGGGATTTAGGAGTTGTTTTCTTCAACATTCAGG-- i cebCap1.NW_016107750v1 C 0 C 0 s dasNov3.JH570235 97452 22 + 1056298 ---------------------------cagg-------ctttccagtctcaagaaa i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e canFam3.chr10 46118060 1127 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5103691 34 - 6317780 I e micMur3.chr7 5739240 31 + 108171978 I a score=274826.000000 s hg38.chr22_GL383582v2_alt 105373 22 + 162811 TGGCACTACATTCACCCA-GTGG s panTro5.chr22 28885277 22 + 37823149 TGGCACTACATTCACCCA-GTGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159880 22 + 50109623 TGGCACTACATTCACCCA-GTGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182703 22 + 4464012 TGGCACTACATTCACCCA-GTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678465 22 - 115148730 TGGCACTACATTCACCCA-GTGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293333 22 + 92844088 TGGCACTACATTCACCCA-GTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87637981 22 - 96509753 TGGCACTACATTCACCCA-GTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129808 22 - 13098629 TGGCACTACATTCACCCA-GTGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096581 22 - 4483953 TGGCACTACATTCACCCA-GTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727234 22 + 33263144 TGGCACTACATTCATCCA-GTGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007932 22 - 14338769 TGGCACTACATTCACCCA-GTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945865 22 + 1946073 TGGCACTACATTCACCCA-GTGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973522 22 - 2117846 TTGCATTACATTCACCCA-GTGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883714 22 - 16357246 TTGCATTACATTCACCCA-GTGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370065 23 - 1807191 TTGCATTACATTCACCCAGGTGG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5739271 22 + 108171978 TGGCACTACATTCACCTA-GTGT i micMur3.chr7 I 31 C 0 s proCoq1.NW_012136747v1 5103725 22 - 6317780 TGGCACTACATTCACCCA-GTGT i proCoq1.NW_012136747v1 I 34 C 0 s dasNov3.JH570235 97474 22 + 1056298 tggcaCCAAATTTACACA-ATGG i dasNov3.JH570235 C 0 I 182 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e canFam3.chr10 46118060 1127 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=36400.000000 s hg38.chr22_GL383582v2_alt 105395 3 + 162811 CAA s panTro5.chr22 28885299 3 + 37823149 CAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159902 3 + 50109623 CAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182725 3 + 4464012 CAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678487 3 - 115148730 CAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293355 3 + 92844088 CAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638003 3 - 96509753 CAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129830 3 - 13098629 CAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096603 3 - 4483953 CAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727256 3 + 33263144 CAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007954 3 - 14338769 CAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945887 3 + 1946073 CAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973544 3 - 2117846 CAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883736 3 - 16357246 CAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370088 3 - 1807191 CAA i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5739293 3 + 108171978 CAA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5103747 3 - 6317780 CGA i proCoq1.NW_012136747v1 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97496 182 + 1056298 I e canFam3.chr10 46118060 1127 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=896803.000000 s hg38.chr22_GL383582v2_alt 105398 78 + 162811 CTCACATTTTTGTCCCCAGAGA-CATACAC-TGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAG s panTro5.chr22 28885302 78 + 37823149 CTCACATTTTTGTCCCCAGAGA-CATACAC-TGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41159905 78 + 50109623 CTCACATTTTTGTCCCCAGAGA-CATACAC-TGAAACTCATGAACAACAAAGCCTCATATAGATGCCCTCTATAATGAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182728 78 + 4464012 CTCACATTTTTGTCCCCAGAGA-CATACAC-TGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678490 78 - 115148730 CTCACATTTTTGTCCCCAGAGA-CATACAC-TGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293358 78 + 92844088 ATCACGTTTTTGTCCCCAGAGA-CATACAC-TGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATAAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638006 78 - 96509753 ATCACGTTTTTGTCCCCAGAGA-CATACAC-TGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7129833 78 - 13098629 ATCACGTTTTTGTCCCCAGAGA-CATACAC-TGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096606 78 - 4483953 CTCACGTTTTTGTCCCCAGAGA-CATACAC-TGAAACTCATGAACAACAAAGCCTCATACAAATGCCCTCTATAATGAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727259 78 + 33263144 CTCACGTTTTTGTCCCCAAAGA-CATACAC-TGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14007957 79 - 14338769 CTCACGTTTTTGTCCCCAGAGACCATACAC-TGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 945890 78 + 1946073 CTCACGTTTTTGTCCCCAGAGA-CATACAC-TGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973547 78 - 2117846 TTCATATTTTTGTCACAAGAGC-CATACAC-TAAAACTCATGAACAACAAAACCTCATACAGATGCCCTCTATAATGAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883739 78 - 16357246 CTCGTATTTTTGTCTCAAGAGC-CATATAC-TAAAACTCATGAACAACAAAACCTCAAACAGATGCCCTCTATAATCAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370091 78 - 1807191 CTCATATTTTTGTCACAAGAGC-CATACAC-TAAAAGTCATGAACAACAAAACCTCATACAGATGCCCTCTATAATGAAG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5739296 79 + 108171978 CTCACATTTTTGTCCCAAAAGG-CATACACTTAAAAGACATGAACAATGAAACCTTACACAGATGCCCTCTGTAATGAAG i micMur3.chr7 C 0 I 148 s proCoq1.NW_012136747v1 5103750 78 - 6317780 CTCACATTTCTGTCCCAAAAGG--ATACACTTAAAAGACATGAACAACAAAACCTTGCACAGATGCCCTCTGTAATGAAG i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46119187 71 - 69331447 CTCATATTTGTGGCTCAAGAGG-CACCCAC-TGAGACACATGCACAA-----CCTTGCACAGATGCCCTC--TAATGAGA i canFam3.chr10 I 1127 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97496 182 + 1056298 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=802024.000000 s hg38.chr22_GL383582v2_alt 105476 78 + 162811 GCAAAACCT---------GTTCC--------TCTGCCTTACAAAGAACCACAAGGACAAGAAATTAAGAATGCTGCTGGTCATCCATCTCTCATC s panTro5.chr22 28885380 78 + 37823149 GCAAAACCT---------GTTCC--------TCTGCCTTACAAAGAACCACAAGGACAAGAAATTAAGAATGCTGCTGGTCATCCATCTCTCATC i panTro5.chr22 C 0 I 5 s panPan2.chr22 41159983 78 + 50109623 GCAAAACCT---------GTTCC--------TCTGCCTTACAAAGAACCACAAGGACAAGAAATTAAGAATGCTGCTGGTCATCCATCTCTCATC i panPan2.chr22 C 0 I 5 s gorGor5.CYUI01015375v1 3182806 78 + 4464012 GCAAAACCT---------GTTCC--------TCTGCCTTACAAAGAACCACAAGGACAAGAAATTAAGAATGCTGCTGGTCATCCATCTCTCATC i gorGor5.CYUI01015375v1 C 0 I 5 s nomLeu3.chr7b 106678568 78 - 115148730 GCAGAACCT---------GTTCC--------TCTGCCTTACAAAGAACCACAAGGACAAGAAATTAAGAATACTGCTGGTCATCCATCTCTCATC i nomLeu3.chr7b C 0 I 5 s rheMac8.chr10 84293436 85 + 92844088 GCAGAACCT---------GTTCCTGGCATATTGTGCCTTACAAAGAA-CACAAGGGCAAGAAATTAAGAATATTGACGGTCATCCATCTCTCATC i rheMac8.chr10 C 0 I 5 s macFas5.chr10 87638084 85 - 96509753 GCAGAACCT---------GTTCCTGGCATATTGTGCCTTACAAAGAA-CACAAGGGCAAGAAATTAAGAATATTGACGGTCATCCATCTCTCATC i macFas5.chr10 C 0 I 5 s macNem1.NW_012012688v1 7129911 85 - 13098629 GCAGAACCT---------GTTCCTGGCATATTGTGCCTTACAAAGAA-CACAAGGGCAAGAAATTAAGAATATTGACGGTCATCCATCTCTCAGC i macNem1.NW_012012688v1 C 0 I 5 s cerAty1.NW_011999588v1 4096684 85 - 4483953 GCAGAACCT---------ATTCCTGGCATATTGTGCCTTACAAAGAA-CACAAAGGCAAGAAATTAAGAATACTGACGGTCATCCATCTCTCATC i cerAty1.NW_011999588v1 C 0 I 5 s chlSab2.chr19 24727337 85 + 33263144 GCAGAACCT---------GTTCCTGGCATATTGTGCCTTACAAAGAA-CACAAGGGCAAGAAATTAAGAATATTGACGGTCATCCATCTCTCATC i chlSab2.chr19 C 0 I 5 s manLeu1.NW_012102031v1 14008036 85 - 14338769 GCAGAACCT---------GTTCCTGGCATATTGTGCCTTACAAAGAA-CACAAGGGCAAGAAATTAAGAATATTGACGGTCATCCATCTCTCATC i manLeu1.NW_012102031v1 C 0 I 5 s colAng1.NW_012115588v1 945968 85 + 1946073 GCAGAACCT---------GTTCCTGGCATATTGTGCCTTGCAAAGAA-CACAAGGGCAAGAAATTAAGAGTATTGACGGTCATCCATCTCTCATC i colAng1.NW_012115588v1 C 0 I 5 s calJac3.chrUn_GL286373 1973625 86 - 2117846 GCAGAACCT---------GTTCCTGGCATACTGTGCCTTACAAAGAACCACAAGAACAAGAAATTAAGAATACTGTTGGTCATCCATCTCTCATC i calJac3.chrUn_GL286373 C 0 I 5 s saiBol1.JH378157 8883817 86 - 16357246 GCAGAACCT---------GTTCCTGGCATACTATGCCTTACAAAGAACCACAAGAACAAGAAATTAAGAATACTGCTGGTCATCCATCTCTCATC i saiBol1.JH378157 C 0 I 5 s cebCap1.NW_016107750v1 1370169 86 - 1807191 GCAGAACCT---------GTTCCTGGCATACTGTGCCTTACAAAGAACCACAAGAACAAGAAATTAAGAATACTGCTGGTCATCCATTTCTCATC i cebCap1.NW_016107750v1 C 0 I 5 s proCoq1.NW_012136747v1 5103828 86 - 6317780 ATAGAACTT---------GTCCCCAGTATGCTATGCCTCACAAAGAACCACAAGGATAAGAAATTAAGATTATTGCTGGTTGTCCATCTCTCATC i proCoq1.NW_012136747v1 C 0 I 62 s canFam3.chr10 46119258 89 - 69331447 GCAGAGCCCGTGGCAATGGTTCCCAGCAAGCTGTGCCCCACAAAGAACTACTGGGGTAAGCAATTAAGA------CTGGTCATCCATCTCTCGCC i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97496 182 + 1056298 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5739375 148 + 108171978 I a score=202982.000000 s hg38.chr22_GL383582v2_alt 105554 34 + 162811 ----ATTTTTTTCCCC--AAAACTATA---------ACAGGA----AAAC--AAA s panTro5.chr22 28885463 34 + 37823149 ----ATTTTTTTCCCC--AAAACTATA---------ACAGGA----AAAC--AAA i panTro5.chr22 I 5 C 0 s panPan2.chr22 41160066 33 + 50109623 ----A-TTTTTTCCCC--AAAACTATA---------ACAGGA----AAAC--AAA i panPan2.chr22 I 5 C 0 s gorGor5.CYUI01015375v1 3182889 34 + 4464012 ----ATTTTTTTCCCC--AAAACGATA---------ACAGGA----AAAC--AAA i gorGor5.CYUI01015375v1 I 5 C 0 s nomLeu3.chr7b 106678651 43 - 115148730 ----ATTTTTTCCCCC--AAAACTATAAAGTAGCATACAGGA----AAAC--AAA i nomLeu3.chr7b I 5 C 0 s rheMac8.chr10 84293526 41 + 92844088 ----ATATTGTTCCCC--AAAACTATAAAGTAGCATACAGGA----AAAC----A i rheMac8.chr10 I 5 C 0 s macFas5.chr10 87638174 41 - 96509753 ----ATATTGTTCCCC--AAAACTATAAAGTAGCATACAGGA----AAAC----A i macFas5.chr10 I 5 C 0 s macNem1.NW_012012688v1 7130001 41 - 13098629 ----ATATTGTTCCCC--AAAACTATAAAGTAGCATACAGAA----AAAC----A i macNem1.NW_012012688v1 I 5 C 0 s cerAty1.NW_011999588v1 4096774 41 - 4483953 ----ATATTGTTCCCC--AAAACTATAAAGTAGCATACAGGA----AAAC----A i cerAty1.NW_011999588v1 I 5 C 0 s chlSab2.chr19 24727427 41 + 33263144 ----ATTTTGTTCCCC--AAAACTATAAAGTAACATACAGGA----AAAC----A i chlSab2.chr19 I 5 C 0 s manLeu1.NW_012102031v1 14008126 41 - 14338769 ----ATATTGTTCCCC--AAAACTATAAAGTAGCATACAGGA----AAAC----A i manLeu1.NW_012102031v1 I 5 C 0 s colAng1.NW_012115588v1 946058 41 + 1946073 ----ATTTTGTTCCCC--AAAACTATAAAGTAGCATACAAGA----AAAC----A i colAng1.NW_012115588v1 I 5 C 0 s calJac3.chrUn_GL286373 1973716 47 - 2117846 ----ATTTTTTTCCCCCAAAAACTATAAGGTTGC--ATAGAGAAATAAAT--AAA i calJac3.chrUn_GL286373 I 5 C 0 s saiBol1.JH378157 8883908 43 - 16357246 ----ATTTTTTTCCCCAAAATACTATAAAGTAGC--ATAGAG----AAAT--AAA i saiBol1.JH378157 I 5 C 0 s cebCap1.NW_016107750v1 1370260 42 - 1807191 ----ACCTTTTTTTCCCAAAAACTATAAAGTAGC--ACAGGG----AAAT---AA i cebCap1.NW_016107750v1 I 5 C 0 s canFam3.chr10 46119347 49 - 69331447 CTTTAATGTTTTCCCA--GAAACGATAAAGCAGTGAATGGAA----AAAGCTGTC i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97496 182 + 1056298 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5103914 62 - 6317780 I e micMur3.chr7 5739375 148 + 108171978 I a score=144332.000000 s hg38.chr22_GL383582v2_alt 105588 13 + 162811 AATCAGTCTCACT s panTro5.chr22 28885497 13 + 37823149 AATCAGTCTCACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160099 13 + 50109623 AATCAGTCTCACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182923 13 + 4464012 AATCAGTCTCACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678694 13 - 115148730 AGTCAGTCTCACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293567 13 + 92844088 AGTCAGTCTCACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638215 13 - 96509753 AGTCAGTCTCACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130042 13 - 13098629 AGTCAGTCTCACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096815 13 - 4483953 AGTCAGTCTCACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727468 13 + 33263144 AGTCAGTCTCACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008167 13 - 14338769 AGTCAGTCTCACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946099 13 + 1946073 AGTCAGTCTCACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973763 13 - 2117846 AGTCAATCTCACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883951 13 - 16357246 AGTCAATCTCACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370302 13 - 1807191 AGTCAATCTCACT i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46119396 13 - 69331447 ACCCAGTCTCATT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 97678 13 + 1056298 ACTCAGTCTCATT i dasNov3.JH570235 I 182 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5103914 62 - 6317780 I e micMur3.chr7 5739375 148 + 108171978 I a score=908929.000000 s hg38.chr22_GL383582v2_alt 105601 78 + 162811 ACCAAAACACA-TTTTAA--CATCTCC--TTAAATT-TTTATACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTC s panTro5.chr22 28885510 78 + 37823149 ACCAAAACACA-TTTTAA--CATCTCC--TTAAATT-TTTATACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160112 78 + 50109623 ACCAAAACACA-TTTTAA--CATCTCC--TTAAATT-TTTATACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3182936 78 + 4464012 ACCAAAACACA-CTTTAA--CATCTCC--TTAATTT-TTTATACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678707 78 - 115148730 ACCAAAACACA-CTTTAA--CATCTCC--TTAATTT-TTTATATGTAGATTAAAATTCTGACCAGCATATTTACAAATTATTTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293580 79 + 92844088 ATCAAAACACACTTTTAA--CAACTCC--TTAATTT-TTTATACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638228 79 - 96509753 ATCAAAACACACTTTTAA--CAACTCC--TTAATTT-TTTACACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130055 79 - 13098629 ATCAAAACACACTTTTAA--CAACTCC--TTAATTT-TTTATACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096828 79 - 4483953 ATCAAAACACACTTTTAA--CAACTCC--TTAATTT-TTTATACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727481 77 + 33263144 ACCAAA--ACACTTTTAA--CAACTCC--TTAATTT-TTTATACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008180 79 - 14338769 ATCAAAACACACTTTTAA--CAACTCC--TTAATTT-TTTATACGTAGATTAAAATTCTCACCAGCATATTCACAAATTATTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946112 79 + 1946073 ACCAAAACACACTTTTAA--CAGCTCC--TTAATTT-TTTATACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973776 78 - 2117846 ACCAAAACATG-CTTTAA--CATCTCC--TTAATTT-TTTATACATACATTAAAATTCTGACCAGCATTTTCACAAATTATATC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8883964 75 - 16357246 ACCAAAGCACG-CTTTAA--TATCTC-----AATTT-TTTATACGTACATTAAAATCCTGACCAGCATTTTCACAAATTATATC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370315 78 - 1807191 ACCAAAACACG-CTTTAA--CATCTCC--TTAATTT-TTTACATGTACATTAAAATTCTGACCAGCATTTTCACAAATTATATC i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5739523 76 + 108171978 ACCAAAACACA-TTTTAA--CATCTCT--TTAATTT-TTT--ACATAGATTAAAATTCTAACCAGCATTTTCACAAATTACTTC i micMur3.chr7 I 148 C 0 s proCoq1.NW_012136747v1 5103976 77 - 6317780 ACCAAAACACA-TTTTAA--CATCTCT--TCAATTT-TTTA-ACATAGATTAAAATTCTAACCAGCATTTTCACAAATTATTTC i proCoq1.NW_012136747v1 I 62 C 0 s canFam3.chr10 46119409 81 - 69331447 ACCAAAACACA-TTTTCACTCCTCTCT--TTAATTTCTTTATGCAAAGATTAAAATTCTAACCAGTATTTTCATGACTGATTTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 97691 75 + 1056298 ACCAAAACACA-TTTTTA--AGTCTCCCTTCAATTT-TTTATACA-----TAAAATCCTAAGAAACATTTTCATAAACTGTTGT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=29223.000000 s hg38.chr22_GL383582v2_alt 105679 2 + 162811 CA s panTro5.chr22 28885588 2 + 37823149 CA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160190 2 + 50109623 CA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183014 2 + 4464012 CA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678785 2 - 115148730 CA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293659 2 + 92844088 CA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638307 2 - 96509753 CA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130134 2 - 13098629 CA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096907 2 - 4483953 CA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727558 2 + 33263144 CA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008259 2 - 14338769 CA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946191 2 + 1946073 CA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973854 2 - 2117846 CA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884039 2 - 16357246 CA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370393 2 - 1807191 CA i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5104053 2 - 6317780 CA i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46119490 2 - 69331447 CA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 97766 2 + 1056298 CA i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5739599 0 + 108171978 C a score=68880.000000 s hg38.chr22_GL383582v2_alt 105681 6 + 162811 ATATTA s panTro5.chr22 28885590 6 + 37823149 ATATTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160192 6 + 50109623 ATATTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183016 6 + 4464012 ATATTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678787 6 - 115148730 ATATTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293661 6 + 92844088 ATATTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638309 6 - 96509753 ATATTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130136 6 - 13098629 ATATTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096909 6 - 4483953 ATATTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727560 6 + 33263144 ATATTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008261 6 - 14338769 ATATTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946193 6 + 1946073 ATATTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973856 6 - 2117846 ATTTTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884041 6 - 16357246 ATATTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370395 6 - 1807191 ATATTA i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5104055 6 - 6317780 ATATTA i proCoq1.NW_012136747v1 C 0 I 6 s dasNov3.JH570235 97768 6 + 1056298 ATATTG i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e canFam3.chr10 46119492 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5739599 0 + 108171978 C a score=1601.000000 s hg38.chr22_GL383582v2_alt 105687 8 + 162811 CATAC--------ttt s panTro5.chr22 28885596 8 + 37823149 CATAC--------ttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160198 8 + 50109623 CATAC--------ttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183022 8 + 4464012 CATAC--------ttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678793 8 - 115148730 CGTAt--------ttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293667 8 + 92844088 TGTAC--------ttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638315 8 - 96509753 TGTAC--------ttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130142 9 - 13098629 TGTAC-------tttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096915 10 - 4483953 TGTAC------ttttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727566 7 + 33263144 CGTAC---------tt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008267 8 - 14338769 TGTAC--------ttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946199 6 + 1946073 CATAC----------t i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973862 5 - 2117846 CATA-----------t i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884047 16 - 16357246 CATAtttttttttttt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370401 4 - 1807191 CATA------------ i cebCap1.NW_016107750v1 C 0 C 0 s dasNov3.JH570235 97774 8 + 1056298 TGCAA--------TTT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e canFam3.chr10 46119492 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5104061 6 - 6317780 I e micMur3.chr7 5739599 0 + 108171978 C a score=194793.000000 s hg38.chr22_GL383582v2_alt 105695 32 + 162811 ttttttttttttttgagat-ggagtttcgctct s panTro5.chr22 28885604 29 + 37823149 ttttttttttt---gagat-ggagtttcgctct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160206 27 + 50109623 ttttttttt-----gagat-ggagtttcgctct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183030 29 + 4464012 ttttttttttt---gagatgggagtttcgctc- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678801 27 - 115148730 ttttttttt-----gagat-ggagtttcgctct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293675 27 + 92844088 ttttttttt-----gagat-ggaatttcgctct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638323 27 - 96509753 ttttttttt-----gagat-ggaatttcgctct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130151 27 - 13098629 ttttttttt-----gagat-ggaatttcgctct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096925 27 - 4483953 ttttttttt-----gagat-ggaatttcgctct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727573 27 + 33263144 tttttttct-----gagat-ggaatttcactct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008275 27 - 14338769 ttttttttt-----gagat-ggaatttcgctct i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946205 27 + 1946073 ttttttttt-----gagat-ggaatttcgctct i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973867 27 - 2117846 ttttatttt-----gagac-ggagtttcgctct i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884063 27 - 16357246 ttttttttt-----ttGAC-AGAGTCTTGCTCT i saiBol1.JH378157 C 0 M 348 s cebCap1.NW_016107750v1 1370405 23 - 1807191 ----ttttt-----gagac-agactttcgctct i cebCap1.NW_016107750v1 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97782 0 + 1056298 C e canFam3.chr10 46119492 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5104061 6 - 6317780 I e micMur3.chr7 5739599 0 + 108171978 C a score=53588.000000 s hg38.chr22_GL383582v2_alt 105727 9 + 162811 tgtcaccc-a s panTro5.chr22 28885633 9 + 37823149 tgtcaccc-a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160233 9 + 50109623 tgtcaccc-a i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183059 8 + 4464012 -gtcaccc-a i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678828 10 - 115148730 tgtcacccaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293702 9 + 92844088 tgtcaccc-a i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638350 9 - 96509753 tgtcaccc-a i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130178 9 - 13098629 tgtcaccc-a i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096952 9 - 4483953 tgtcaccc-a i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727600 9 + 33263144 tgtcaccc-a i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008302 9 - 14338769 tgtcaccc-a i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946232 9 + 1946073 tgtcaccc-a i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973894 8 - 2117846 tgtcactc-- i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1370428 8 - 1807191 tgtcactg-- i cebCap1.NW_016107750v1 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97782 0 + 1056298 C e canFam3.chr10 46119492 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5104061 6 - 6317780 I e micMur3.chr7 5739599 0 + 108171978 C e saiBol1.JH378157 8884090 348 - 16357246 M a score=2033758.000000 s hg38.chr22_GL383582v2_alt 105736 255 + 162811 ggctggagtgcaatggcgcgatctcagctcactgcaacctccacctcccggttcaagc-gattctcccgcctcagcctccccagcagttgggattacaggtg---cccaccaccatgcccagctaacttctgtatttttagtagagatggggttt-ccccacgttggccaggctagtctcaaactcctgacctcaggtggtccgcctgcctcggcctcccacagtgccaggattacaggtgtgagccaccatgcccagcT s panTro5.chr22 28885642 255 + 37823149 ggctggagtgcaatggcgcgatctcagctcactgcaacctccacctcccggttcaagc-gattctcctgcctcagcctccccagcagttgggattacaggtg---cccaccaccatgcccagctaacttctgtatttttagtagagatggggttt-ccccacgttggccaggctagtctcaaactcctgacctcaggtggtccgcctgcctcggcctcccacagtgccaggattacaggtgtgagccaccacgcccagcT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160242 255 + 50109623 ggctggagtgcaatggcgcgatctcagctcactgcaacctccacctcccggttcaagc-gattctcctgcctcagcctccccagcagttgggattacaggtg---cccaccaccatgcccagctaacttctgtatttttagtagagatggggttt-ccccacgttggccaggctagtctcaaactcctgacctcaggtggtccgcctgcctcggcctcccacagtgccaggattacaggtgtgagccaccacgcccagcT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183067 255 + 4464012 ggctggagtgcaatggcgcgatctcagctcactgcaacctccacctcccggttcaagt-gattctcctgcctcagcctccccagcagttgggattacaggtg---cccaccaccatgcccagctaacttctgtattttcagtagagatggggttt-ccccacgttggccaggctagtctcaaactcctgacctcaggtggtccgcctgcctcagcctcccaaagtgccaggattacaggtgtgagccaccgcgcccagcT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106678838 255 - 115148730 ggctggaatgcaatggcgcaatctcagctcactgcaacctccacctcccggttcaaat-gattctcctgcctcagcctccccagtagttgggattacaggtg---cctgccaccatgcccagctaacttttgtatttttagtagaggcggggttt-ccccacgttggccaggctagtctcaaactcctgacctcaggtggtccgcgtgcctcagcctccctaagtgccaggattacaggtgtgagccaccgcgcccagcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293711 248 + 92844088 ggctggagtgcaatggcgcaatctcagctcactgcaacctccaccttccagttcaagtggattctcctgcctcagcctcctgagtagttgggattacaggtg---cctgtcaccatgcccagctaacttttgtatttttagtagagatggagttt-ccccacattggtcaggctagtctcaaactcctgacctca--------gcctgcctctgcctcccaaagtgctgggattacaggtaggagccaccgcgcccagcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638359 248 - 96509753 ggctggagtgcaatggcgcaatctcagctcactgcaacctccaccttccagttcaagtggattctcctgcctcagcctcctgagtagttgggattacaggtg---cctgtcaccatgcccagctaatttttgtatttttagtagagatggagttt-ccccacattggtcaggctagtctcaaactcctgacctca--------gcctgcctctgcctcccaaagtgctgggattacaggtaggagccaccgcgcccagcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130187 221 - 13098629 ggctggagtgcaatggcgcaatctcagctcactgcaacctccaccttccagttcaagtggattctcctgcctcagcctcctgagtagttg------------------------------agctaacttttgtatttttagtagagatggagttt-ccccacattggtcaggctagtctcaaactcctgacctca--------gcctgcctctgcctcccaaagtgctgggattacaggtaggagccaccgcgcccagcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4096961 248 - 4483953 ggctggagtgcaatggcgcaatctcagctcactgcaacctccaccttccagttcaagtggattctcctgcctcagcctcctgagtagttgggattacaggtg---cctgtcaccatgcccagctaacttttgtatttttagtagagatggagttt-ccccacattggtcaggctagtctcaaactcctgacctca--------gcctgcctctgcctcccaaagtgctaggattataggtaggagtcaccgcgcccagcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727609 248 + 33263144 ggctggagtgcaatggcgcaatctcagctcactgcaacctccaccttccagttcaagtggattctcctgcctcagccacccgagtagttgggattacaggtg---cctatcaccatgcccagctaacttttgtatttttagtagagatggagttt-ccccacattggtcaggctagtctcaaactcctgacctca--------gcctgcctctgcctcccaaagtgctgggattacaggtaggagccaccgcgcccagcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008311 248 - 14338769 ggctggagtgcaatggcgcaatctcagctcactgcaacctccaccttccagttcaagtggattctcctgcctcagcctcctgagtagttgggattacaggtg---cctgtcaccatgcccagctaacttttgtatttttagtagagatggagttt-ccccacattggtcaggctagtctcaaactcctgacctca--------gcctgcctctgcctcccaaagtgctgggattacaagtaggagccaccgcgcccagcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946241 248 + 1946073 ggctggagtgcaatggtgcgatctcagctcactgcaacctccaccttccagttcaagtggattctcctacctcagcctcccatgtagttaggattacaggtg---cctgtcgccatgcccagctaagttttgtatttttagtagagatggagttt-ccccatgttggtcaggctagtctcaaactcctgacctca--------gcctgcctctgcctcccaaagtgctgggattacaggtaggagccaccgcgcccagcc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1973902 259 - 2117846 ggctggagtgcaatgaccagatctcagctgactgcaacctttgcctccttgttcaagc-gattctcctgcctcagcctaccgagtagctgggattacaggtgcccccccccaccacatccagctaatttttgtatttttagtagggacgaggtttcccccatgttgaccaggctggtttctaactcctgacctcaggtggtccacgtgcctcagcctcccaaagtgctgggattacacgtgtgagccaccacacccggcc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884438 255 - 16357246 ggctggagtgcaataacatgatctcagctgactgcaacctttgcctccttgttcaagc-gattctcctgcctcagcctcccgagtagctgggattacaggtg---ccctgcacctcgcccagctaatttttgtatttttagtagagacgaggttt-ccccatgttgaccaggctggtctctaactcctgacctcaggtggtccacatgcctcagcctcccaaagtgctgggattgcacgtgtgagccaccacacccggcc i saiBol1.JH378157 M 348 C 0 s cebCap1.NW_016107750v1 1370436 255 - 1807191 ggctggagtgcaatgacatgatctcagctgactgtaacctttgcctccttgttcaagt-gattctcctgcctcagcctcctgagtagctgggattacaggtg---ccccccaccatgcccagctaatttttgtatttttagtagagatgtggttt-ccccatgttaaccaggctggtctctaactcctgacctcaggtggtccgcgtgcctcagcctcccaaagtgctgggattacatgtgtgagccaccacacccggcc i cebCap1.NW_016107750v1 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97782 0 + 1056298 C e canFam3.chr10 46119492 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5104061 6 - 6317780 I e micMur3.chr7 5739599 0 + 108171978 C a score=36954.000000 s hg38.chr22_GL383582v2_alt 105991 4 + 162811 CAAT s panTro5.chr22 28885897 4 + 37823149 CAAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160497 4 + 50109623 CAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183322 4 + 4464012 CAAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679093 4 - 115148730 CAAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293959 4 + 92844088 CAAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638607 4 - 96509753 CAAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130408 4 - 13098629 CAAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097209 4 - 4483953 CAAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727857 4 + 33263144 CAAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008559 4 - 14338769 CAAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946489 4 + 1946073 CAAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974161 4 - 2117846 CCGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884693 4 - 16357246 CAGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370691 4 - 1807191 CAGT i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5739599 4 + 108171978 CAAT i micMur3.chr7 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97782 0 + 1056298 C e canFam3.chr10 46119492 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5104061 6 - 6317780 I a score=108219.000000 s hg38.chr22_GL383582v2_alt 105995 10 + 162811 ATTACATACT s panTro5.chr22 28885901 10 + 37823149 ATTACATACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160501 10 + 50109623 ATTACATACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183326 10 + 4464012 ATTACATACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679097 10 - 115148730 ATTACATACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293963 10 + 92844088 ATTACATACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638611 10 - 96509753 ATTACATACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130412 10 - 13098629 ATTACATACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097213 10 - 4483953 ATTATACACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727861 10 + 33263144 ATTACATACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008563 10 - 14338769 ATTATATACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946493 10 + 1946073 ATTACATACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974165 10 - 2117846 ATTACATACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884697 10 - 16357246 ATTACATACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370695 10 - 1807191 ATTACATACT i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5739603 10 + 108171978 ATTATACACA i micMur3.chr7 C 0 C 0 s canFam3.chr10 46119492 10 - 69331447 ATTATATGTT i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97782 0 + 1056298 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5104061 6 - 6317780 I a score=25772.000000 s hg38.chr22_GL383582v2_alt 106005 2 + 162811 TT s panTro5.chr22 28885911 2 + 37823149 TT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160511 2 + 50109623 TT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183336 2 + 4464012 TT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679107 2 - 115148730 TT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293973 2 + 92844088 TT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638621 2 - 96509753 TT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130422 2 - 13098629 TT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097223 2 - 4483953 TT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727871 2 + 33263144 TT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008573 2 - 14338769 TT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946503 2 + 1946073 TT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974175 2 - 2117846 CT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884707 2 - 16357246 TT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370705 2 - 1807191 TT i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5739613 2 + 108171978 TT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5104067 2 - 6317780 TT i proCoq1.NW_012136747v1 I 6 C 0 s canFam3.chr10 46119502 2 - 69331447 TT i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97782 0 + 1056298 C e otoGar3.GL873526 36316700 270 - 42659167 I a score=524949.000000 s hg38.chr22_GL383582v2_alt 106007 41 + 162811 TAAACATACATA-TTTAAATGGCATCCAAAG--GCCCACCTCTT s panTro5.chr22 28885913 41 + 37823149 TAAACATACATA-TTTAAATGGCATCCAAAG--GCCCACCTCTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160513 41 + 50109623 TAAACATACATA-TTTAAATGGCATCCAAAG--GCCCACCTCTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183338 41 + 4464012 TAAACATACATA-TTTAAATGGCATCCAAAG--GCCCACCTCTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679109 41 - 115148730 TAAACATACATA-TTTAAATGGCATCCAAAG--GCCCACCTCTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84293975 41 + 92844088 TAAACATACATA-TTTAAATGGCATCCAAAG--GCCCACCTCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638623 41 - 96509753 TAAACATACATA-TTTAAATGGCATCCAAAG--GCCCACCTCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130424 41 - 13098629 TAAACATACATA-TTTAAATGGCATCCAAAG--GCCCACCTCTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097225 41 - 4483953 TAAACATACATA-TTTAAATGGCATCCAAAG--GCCCACCTCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727873 41 + 33263144 TAAACATACATA-TTTAAATGGCATCCAAAG--GCCCACCTCTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008575 41 - 14338769 TAAACATACATA-TTTAAATGGCATCCAAAG--GCCCACCTCTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946505 41 + 1946073 TAAACATACATA-TTTAAATAGCATCTGAAG--GCCCACCTCTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974177 42 - 2117846 TAAACATACATACTTTAAATGGCATCCAAAG--GCTCACTTCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884709 42 - 16357246 TAAACATACATACTTTAAATGGCATCCAAAG--GCTCACTTCCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370707 42 - 1807191 TAAACATACATACTTTAAATGGCATCCAAAG--GCTCACTTCCT i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5739615 42 + 108171978 TAAAAATACATAATTTAAATGGCATCCAAAA--GCCCACCTCTT i micMur3.chr7 C 0 I 64 s proCoq1.NW_012136747v1 5104069 42 - 6317780 TAAAAATACATAATTTAAATGGCATTCAAAA--GCCCACCTCTT i proCoq1.NW_012136747v1 C 0 I 81 s canFam3.chr10 46119504 40 - 69331447 AAAACAAGTAC--TTTAAGTGGTATCCAAAG--GCCCGCCTCCT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 97782 40 + 1056298 TAAAAATAC----TTTAAATGGCATCCAAGGCTGCTCAGCTTTG i dasNov3.JH570235 C 0 I 7 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=423143.000000 s hg38.chr22_GL383582v2_alt 106048 55 + 162811 CCCACTGGAGGTTACATTGCTT-CTA-CGTGTCTCTT----AA-AGAACCTG---TCAGTCACAA s panTro5.chr22 28885954 55 + 37823149 CCCACTGGAGGTTACATTGCTT-CTA-TGTGTCTCTT----AA-AGAACCTG---TCAGTCACAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160554 51 + 50109623 CCCACTGGAGGTTACATTGCTT-CTA-TGTGTCTCTT---------AACCTG---TCAGTCACAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183379 55 + 4464012 CCCACTGGAGGTTACATTGTTT-CTG-TGTGTCTCTT----AA-AGAACCTG---TTAGTCACAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679150 55 - 115148730 CCCACTGGAGGTTACATTGCTT-CTA-TGTGTCTCTT----AA-AGAACCTG---TCAGTCACAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294016 55 + 92844088 CCCACTGGAGGTTACATTGCTC-CTA-TGTGTCTCTT----AA-ATAACCTA---TCAGTCACAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638664 55 - 96509753 CCCACTGGAGGTTACATTGCTC-CTA-TGTGTCTCTT----AA-ATAACCTA---TAAGTCACAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130465 55 - 13098629 CCCACTGGAGGTTACATTGCTC-CTA-TGTGTCTCTT----AA-ATAACCTA---TCAGTCACAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097266 55 - 4483953 CCCACTGGAGGTTACATTGCTC-CTA-TGTGTCTCTT----AA-ATAACCTA---TCAGTCACAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727914 55 + 33263144 CCCACTGGAGATTACATTGCTC-CTA-TGTCTCTCTT----AA-ATAACCTA---TCAGTCACAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008616 55 - 14338769 CCCACTGGAGGTTACATTGCTC-CTA-TGTGTCTCTT----AA-ATAACCTA---TCAGTCACAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946546 55 + 1946073 TCCACTGGAGGTTACATTGCTC-CTA-TGTGTCTCTT----AA-ATAACTTA---TCAGTTACAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974219 62 - 2117846 TCCACTAAACATTACATTGCTC-CCA-TGTGTCTCTTTAAGAA-AGAACCCAGCCACAGTCACAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884751 63 - 16357246 TCCACTAAACATTACATTGCTC-CTATTGTGTCTCTTTAAGAA-AGAAACTGTTCACAGTCACAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370749 62 - 1807191 TCCACTAAACATTACATTGCTC-CTATTGTGTCTCTTTAAGAA-AGAACCTG-TCACAGTCACAA i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46119544 56 - 69331447 ACCACTAAACATC-TGTTGCTCATTA-CATGCCTCTT----AAGAGAGACTA---CTAGTCACAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 97829 55 + 1056298 CCTACCTCCTATTACGTTGCTC-AT--TGTGTCTTAA---GAG-AAAGCCTG---CTAATCCCGG i dasNov3.JH570235 I 7 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5104111 81 - 6317780 I e micMur3.chr7 5739657 64 + 108171978 I a score=177960.000000 s hg38.chr22_GL383582v2_alt 106103 20 + 162811 ATTTACC-----CTGCACTGATCAC- s panTro5.chr22 28886009 20 + 37823149 ATTTACC-----CTGCACTGATCAC- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160605 20 + 50109623 ATTTACC-----CTGCACTGATCAC- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183434 20 + 4464012 ATTTACC-----CTGCACTGATCAC- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679205 19 - 115148730 ATTTACC-----CTGCACTGATCA-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294071 19 + 92844088 ATTTACG-----CTGTACTGATCA-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638719 19 - 96509753 ATTTACG-----CTGTACTGATCA-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130520 19 - 13098629 ATTTATG-----CTGTACTGATCA-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097321 19 - 4483953 ATTTACG-----CTGTACTGATCA-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727969 19 + 33263144 ATTTATC-----CTGTACTGATCA-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008671 19 - 14338769 ATTTACG-----CTGTACTGATCA-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946601 19 + 1946073 ATTTACC-----CTGTACTGATCA-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974281 19 - 2117846 ATTTACC-----CTGTACTGATCA-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884814 19 - 16357246 ATTTATG-----CTGtactgatca-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370811 19 - 1807191 ATTTACC-----CTGTACTGATCA-- i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5739721 19 + 108171978 ATTCACC-----CTATACTGATCA-- i micMur3.chr7 I 64 I 1 s canFam3.chr10 46119600 24 - 69331447 GTTTACCCCACACTGCACAGATCA-- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 97884 20 + 1056298 GTCCAAC-----CTGGACTGAGCA-C i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5104111 81 - 6317780 I a score=379845.000000 s hg38.chr22_GL383582v2_alt 106123 29 + 162811 CCCCCATGCCAGGCAT--TAGGG-TGGGCTCT s panTro5.chr22 28886029 29 + 37823149 CCCCCATGCCAGGCAT--TAGGG-TGGGCTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160625 29 + 50109623 CCCCCATGCCAGGCAT--TAGGG-TGGGCTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183454 29 + 4464012 CCCCCATGCCAGGCAT--TAGGG-TGGGCTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679224 29 - 115148730 CCCCCATGCCAGGCAT--TAGGG-TGGGCTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294090 29 + 92844088 CCCCCATGCCAGGCAC--TAGGG-TGGGCTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638738 29 - 96509753 CCCCCATGCCAGGCAC--TAGGG-TGGGCTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130539 29 - 13098629 CCCCCATGCCAGGCAC--TAGGG-TGGGCTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097340 29 - 4483953 CCCCCATGCCAGGCAC--TAGGG-TGGGCTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24727988 29 + 33263144 CCCCCATGCCAGGCAC--TAGGG-TGGGCTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008690 29 - 14338769 CCCCCATGCCAGGCAC--TAGGG-TGGGCTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946620 29 + 1946073 CCCCCATGCCAGGCAC--TAGGG-TGGGCTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974300 29 - 2117846 TCCTCATGCCAGGCAC--TAGGG-TGAGCTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884833 29 - 16357246 tccccatgccaggcac--taggg-tgagctct i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370830 29 - 1807191 TCCCCATGCCAGGCAC--TAGGG-TAAGCTCT i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5739741 29 + 108171978 -CCCCATGCCAGGCAC--TAGGGTTGGGCCCT i micMur3.chr7 I 1 C 0 s proCoq1.NW_012136747v1 5104192 29 - 6317780 CCCCCATGCCAGGCAC--TAGGG-TGGGCCCT i proCoq1.NW_012136747v1 I 81 C 0 s canFam3.chr10 46119624 29 - 69331447 GCCAGGTGTCAAGCAC--TACGG-TGGGCTCG i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 97904 29 + 1056298 --CCTGCATTGGGCACTATATAG-TGGGCTCC i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 48900 25 + 5963231 I e mm10.chr15 82837864 1925 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=140713.000000 s hg38.chr22_GL383582v2_alt 106152 9 + 162811 GGGGCCAAC s panTro5.chr22 28886058 9 + 37823149 GGGGCCAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160654 9 + 50109623 GGGGCCAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183483 9 + 4464012 GGGGCCAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679253 9 - 115148730 GGGGCCAAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294119 9 + 92844088 GGGGCCAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638767 9 - 96509753 GGGGCCAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130568 9 - 13098629 GGGGCCAAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097369 9 - 4483953 GGGGCCAAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728017 9 + 33263144 GGGGCCAAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008719 9 - 14338769 GGGGCCAAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946649 9 + 1946073 GGGGCCAAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974329 9 - 2117846 GGGGTCAAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884862 9 - 16357246 ggggccaac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370859 9 - 1807191 GGGGCCAAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 48925 9 + 5963231 GGGGCCAGc i aotNan1.NW_018512383v1 I 25 C 0 s micMur3.chr7 5739770 8 + 108171978 -GGACCAAC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5104221 8 - 6317780 -GGACCAAC i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46119656 9 - 69331447 GGGGAAAAC i canFam3.chr10 I 3 I 13 s dasNov3.JH570235 97933 9 + 1056298 AGGGCCGAC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82837864 1925 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=551686.000000 s hg38.chr22_GL383582v2_alt 106161 45 + 162811 TCAGCCCTT--GGGGAGCCTATCTGGTGAGGACGACAATCAGATAAG s panTro5.chr22 28886067 45 + 37823149 TCAGCCCTT--GGGGAGCCTATCTGGTGAGGACGACAATCAGATAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160663 45 + 50109623 TCAGCCCTT--GGGGAGCCTATCTGGTGAGGACGACAATCAGATAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183492 45 + 4464012 TCAGCCCTT--GGGGAGCCTATCTGGTGAGGAGGACAATCAGATAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679262 45 - 115148730 TCAGCCCTT--GGGGAGCCTATCTGGTGAGGACGACAATCAGATAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294128 45 + 92844088 TTAACTCTT--GGGGAACCTATCTGGTGAAGAAGACAATCAGGTAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638776 45 - 96509753 TTAACTCTT--GGGGAACCTATCTGGTGAAGAAGACAATCAGGTAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130577 47 - 13098629 TTAACTCTTGGGGGGAACCTATCTGGTGAAGAAGACAATCAGGTAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097378 45 - 4483953 TTAACTCTT--GGGGAACCTATCTGGTGAAGAAGACAATCAGGTAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728026 45 + 33263144 TTAGCTCTT--GGGGAACCTATCTGGTGAAGAAGACAATCAGGTAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008728 45 - 14338769 TTAACTCTT--GGGGAACCTATCTGGTGAAGAAGACAATCAGGTAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946658 44 + 1946073 TTAGCTCTT--GGGGAGCCTATCTGGTGAAGACGACAATCAGTT-AG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974338 44 - 2117846 TCAGCCCTT--GGGGAGCCTATCCAGTGA-GAAGACAATCAGGTAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884871 45 - 16357246 tcagccctt--ggggagcctatccagtgaggaagacaatcaggtaag i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370868 45 - 1807191 TCAGCCCTT--GGGGAGCCTATCCAGTGAGGAATACAATCCGGTAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 48934 45 + 5963231 tcagccctt--ggggagcctatccagtgaggaagacaatcaggtaag i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5739778 45 + 108171978 TCAGCCCTT--GGGGAGCTAATCTGGTGAGGAAGACCATCAGGTAAG i micMur3.chr7 C 0 I 147 s proCoq1.NW_012136747v1 5104229 45 - 6317780 TCAGCCCTT--GGGGAGCTAATCTGGTGAGGGAGACCATCAGGTAAG i proCoq1.NW_012136747v1 C 0 C 0 s dasNov3.JH570235 97942 44 + 1056298 GTGGCCCTT---GGGAGTTAATCTGGTGAGGAAGACAGCCAAGTGAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82837864 1925 + 104043685 I e canFam3.chr10 46119665 13 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=13073.000000 s hg38.chr22_GL383582v2_alt 106206 1 + 162811 C s panTro5.chr22 28886112 1 + 37823149 C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160708 1 + 50109623 C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183537 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679307 1 - 115148730 C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294173 1 + 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638821 1 - 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130624 1 - 13098629 C i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097423 1 - 4483953 C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728071 1 + 33263144 C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008773 1 - 14338769 C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946702 1 + 1946073 C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974382 1 - 2117846 C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884916 1 - 16357246 c i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370913 1 - 1807191 C i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 48979 1 + 5963231 c i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5104274 1 - 6317780 T i proCoq1.NW_012136747v1 C 0 C 0 s dasNov3.JH570235 97986 1 + 1056298 C i dasNov3.JH570235 C 0 I 2768 e mm10.chr15 82837864 1925 + 104043685 I e canFam3.chr10 46119665 13 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5739823 147 + 108171978 I a score=124360.000000 s hg38.chr22_GL383582v2_alt 106207 10 + 162811 TGGTAGTCAC s panTro5.chr22 28886113 10 + 37823149 TGGTAGTCAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160709 10 + 50109623 TGGTAGTCAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183538 10 + 4464012 TGGTAGTCAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679308 10 - 115148730 TGGTAGTCAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294174 10 + 92844088 TGGTAGTCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638822 10 - 96509753 TGGTAGTCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130625 10 - 13098629 TGGTAGTCAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097424 10 - 4483953 TGGTAGTCAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728072 10 + 33263144 TGGTAGTCAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008774 10 - 14338769 TGGTAGTCAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946703 10 + 1946073 TGGTAGTCAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974383 10 - 2117846 TGGTAGTCAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884917 10 - 16357246 tggtagtcac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370914 10 - 1807191 TAGTAGTCAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 48980 10 + 5963231 tggtagtcac i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5104275 10 - 6317780 AGGTAGTCAC i proCoq1.NW_012136747v1 C 0 I 112 e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97987 2768 + 1056298 I e canFam3.chr10 46119665 13 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5739823 147 + 108171978 I a score=708279.000000 s hg38.chr22_GL383582v2_alt 106217 84 + 162811 CCCAAGAGCAGCTCCAGCTTAGCTGGGCATTTGCATAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGGGTCTGTGTAACCT s panTro5.chr22 28886123 84 + 37823149 CCCAAGAGCAGCTCCAGCTTAGCTGGGCATTTGCATAAGTGCTGGGAGGTATAGGCTCTGAATACTGTTGGGTCTGTGTAACCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160719 84 + 50109623 CCCAAGAGCAGCTCCAGCTTAGCTGGGCATTTGCATAAGTGCTGGGAGGTATAGGCTCTGAATACTGTTGGGTCTGTGTAACCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183548 84 + 4464012 CCCAAGAGCAGCTCCAGCTTAGCTGGGCATTTGCATAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGGGTCTGTGTAACCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679318 84 - 115148730 CCCAAGAGCAGCTCCAGCTTAGCTGAGCATTTGCATAATTGCTGGGAGACATAGGCTCTGAATACTGTTGGGTCTGTGTAACCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294184 84 + 92844088 ACCAAGAGCAGCTCCAGCTTAGCTGAGCATTTGCGTAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGAGTCTGTGTAACCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638832 84 - 96509753 ACCAAGAGCAGCTCCAGCTTAGCTGAGCATTTGCGTAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGAGTCTGTGTAATCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130635 84 - 13098629 ACCAAGAGCAGCTCCAGCTTAGCTGAGCATTTGCGTAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGAGTCTGTGTAACCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097434 84 - 4483953 ACCAAGAGCAGCTCCAGCTTAGCTGAGCATTTGCATAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGAGTCTGTGTAACCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728082 84 + 33263144 ACCAAGAGCAACTCCAGCCTAGCTGAGCATTTGCATAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGAGTCTGTGTAACCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008784 84 - 14338769 ACCAAGAGCAGCTCCAGCTTAGCTGAGCATTTGCATAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGAGTCTGTGTAACCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946713 84 + 1946073 ACCAAGAGCAACTCCAGCTTAGCTGAACATTTGCATAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGAGTCTGTGTAACCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974393 68 - 2117846 ACCAAGAACAGTTCCATCTTAGCTGAGCACGTGC----------------ATAGTCTCTGGATACCGTTGGGTCTGTGTAACCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884927 67 - 16357246 accaagaacagcTCCATCTTAGCTGAGCACTTGC----------------ATAGTCTCTGGATACTGTTGGGTCTGTGTAA-CA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370924 68 - 1807191 ACCAAGAACAGCTCCATCTTAGCTGAGCACTTGC----------------ATAGTCTCTGGATACCGCTGGGTCTGTGTAACCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 48990 66 + 5963231 accaagaacagcTCCATCTTAGCTGAGCACTTGC----------------ACAGTCTCTGGATACCGTTGGGTC--TCTAACCA i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97987 2768 + 1056298 I e canFam3.chr10 46119665 13 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5104285 112 - 6317780 I e micMur3.chr7 5739823 147 + 108171978 I a score=138942.000000 s hg38.chr22_GL383582v2_alt 106301 13 + 162811 GCAAAGGGAAGGC s panTro5.chr22 28886207 13 + 37823149 GCAAAGGGAAGGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160803 13 + 50109623 GCAAAGGGAAGGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183632 13 + 4464012 GCAAAGGGAAGGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679402 13 - 115148730 GCAAAGGGAAGGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294268 13 + 92844088 GCAAAGGGAAGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638916 13 - 96509753 GCAAAGGGAAGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130719 13 - 13098629 GCAAAGGGAAGGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097518 13 - 4483953 GCAAAGGGAAGGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728166 13 + 33263144 GTAAAGGGAAGGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008868 13 - 14338769 GCAAAGGGAAGGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946797 13 + 1946073 GCAAAGGGAAGGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974461 13 - 2117846 GCAAAGGGAAGGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8884994 13 - 16357246 GCAAAGGGAAGGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370992 6 - 1807191 GCAAAG------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 49056 13 + 5963231 GCAAAGGGAAGGC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5104397 13 - 6317780 GCAAGGAGAAGGA i proCoq1.NW_012136747v1 I 112 C 0 e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97987 2768 + 1056298 I e canFam3.chr10 46119665 13 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5739823 147 + 108171978 I a score=1032988.000000 s hg38.chr22_GL383582v2_alt 106314 93 + 162811 TGAG----------TCAGTAAGGTCTCAGAGGTCTGTCCTACCCTCAGTGAGGAGGCACTCAGACCTGCCACTATTGGAGTGACTTGGGGGATTTGACCCATG s panTro5.chr22 28886220 93 + 37823149 TGAG----------TCAGTAAGGTCTCAGAGGTCTGTCCTACCCTCAGTGAGGAGGCACTCAGACCTGCCACTATTGGAGTGACTTGGGGGATTTGACCCATG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160816 93 + 50109623 TGAG----------TCAGTAAGGTCTCAGAGGTCTGTCCTACCCTCAGTGAGGAGGCACTCAGACCTGCCACTATTGGAGTGACTTGGGGGATTTGACCCATG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183645 93 + 4464012 TGAG----------TCAGTAAGGTCTCAGAGGTCTGTCCTACCCTCAGTGAGGAGGCACTCAGACCTGCCACTATTGGAGTGACTTGGGGGATTTGACCCATG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679415 93 - 115148730 TGAG----------TCAGTAAGGTCTCAGAGGTCTGTCCTATCCTCAGTGAGGAGGCATTCAGACCTGCCACTATTGGAGTGACTTGGGGGATTTGACCCATG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294281 93 + 92844088 TGAG----------TCAGTAAGGTCTCAGAAGTCTGTCCTACCCTCAGTGAGGAGGCACTCGGACCTGCCACTATTGGAGTGACTTGGGGGATCTGACCCATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87638929 93 - 96509753 TGAG----------TCAGTAAGGTCTCAGAAGTCTGTCCTACCCTCAGTGAGGAGGCACTCGGACCTGCCACTATTGGAGTGACTTGGGGGATCTGACCCATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130732 93 - 13098629 TGAG----------TCAGTAAGGTCTCAGAAGTCTGTCCTACCCTCAGTGAGGAGGCACTCGGACCTGCCACTATTGGAGTGACTTGGGGGATCTGACCCATG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097531 93 - 4483953 TGAG----------TCAGTAAGGTCTCAGAAGTCTGTCCTACCCTCAGTGAGGAGGCACTCGGACCTGCCACTATTGGAGTGACTTGGGGGATCTCACCCATG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728179 93 + 33263144 TGAG----------TCAGTAAGGTCTCAGAAGTCTGTCCTACCCTCAGTGAGGAGGCACTCGGACCTGCCACTATTGGAGTGACTTGGGGGATCTGACCCATG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008881 93 - 14338769 TGAG----------TCAGTAAGGTCTCAGAAGTCTGTCCTACCCTCAGTGAGGCGGCACTCGGACCTGCCACTATTGGAGTGACTTGGGGGATCTGACCCATG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946810 93 + 1946073 TGAG----------TCAGTAAGGTCTCAGAAGTCTGTCCTACCCTCAGTGAGGAGGCACTCGGACCTGCCACTATTGGAGTGACTTGGGGGATTTGACCCATG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974474 90 - 2117846 TGAG----------TCAGTAAGGTCTCAGAGCCCTGCCCTGCCCT---TGAGGTGGCACTTGGACCTGCCACTACTGGAATGACTTGGAGGATCTGACCCACG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8885007 90 - 16357246 TGAG----------TCAGTAAGATCTCAGAGCCCTGCCCTGCCCT---TGAGGAGGCACTTGGACCTGCCATTACTGGAATGACTTGGAGGATCTGACCCATG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1370998 70 - 1807191 ------------------------------GCCCTGTCCTGCCCT---TGAGGAGGCACTTGGACCTGCCACTACTGGAATGACTTGGAGGATCTGACCCCTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 49069 100 + 5963231 TGAGAGGTAAGGTCTCAGTAAGGTCTCAGAGCCCTGCCCTGCCTT---TGAGGAGGCACTCGCACCTGCCACTACTGGAATGACTTGGAGGATCTGACCCATG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5739970 91 + 108171978 TGAG----------TCAGTAAGGCCTCAGAGGCCTGCCCTGCCC--AGTCATGAGGAATTTGGACCTGCCACTATTGGAGTGACTTAGAGCACTTAAAGAGTG i micMur3.chr7 I 147 C 0 s proCoq1.NW_012136747v1 5104410 88 - 6317780 TGAG----------TCAGTAAGGCCTCAGAGGCCTGCCCTGCCC--AGTCATGAGGAACTTGGACCTGCCACTACTGGAGTGACTTGGAGCACTT---GAGTG i proCoq1.NW_012136747v1 C 0 C 0 e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97987 2768 + 1056298 I e canFam3.chr10 46119665 13 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=661504.000000 s hg38.chr22_GL383582v2_alt 106407 55 + 162811 GGTGCTAAGTG--GTGTAATAGGTAAAATGGGAGTGCAGCTGGGCAGCACTTGCTGC s panTro5.chr22 28886313 55 + 37823149 GGTGCTAAGTG--GTGTAACAGGTAAAATGGGAGTGCAGCCGGTCAGCACTTGCTGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160909 55 + 50109623 GGTGCTAAGTG--GTGTAACAGGTAAAATGGGAGTGCAGCCGGGCAGCACTTGCTGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183738 55 + 4464012 GGTGCTAAGTG--GTGTAACAGGTAAAATGGGAGTGCAGCTGGGCAGCACTTGCTGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679508 55 - 115148730 GGTGCTAAGAG--GTGTAACAGGTAAAATGGGAGTGCAGCTGGGCAGCACTTGCTGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294374 55 + 92844088 GGTGCTAAGTG--GTGTAACAGGTAAAATGGGAGTGCTGCTGGGCAGCACTTGCTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87639022 55 - 96509753 GGTGCTAAGTG--GTGTAACAGGTAAAATGGGAGTGCTGCTGGGCAGCACTTGCTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130825 54 - 13098629 GGTGCTAAGTG--GTGTAACAGGTAAAATGGGAGTGCTGCT-GGCAGCACTTGCTGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097624 55 - 4483953 GGTGCTAAGTG--GTGTAACAGGTAAAATGGGAGTGCTGCTGGGCAGCACTTGCTGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728272 55 + 33263144 GGTGCTAAGTG--GTGTAACAGGTAAAATGGGAGTGCTGCTGGGCAGCACTTGCTGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14008974 55 - 14338769 GGTGCTAAGTG--GTGTAACAGGTAAAATGGGAGTGCTGCTGGGCAGCACTTGCTGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946903 57 + 1946073 GGTGCTAAGTGGTGTGTAACAGGTAAAATGGGAGTGCTGCTGGGCAGCACTTGCTGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974564 55 - 2117846 GGTGCTAAGTA--GCTTAACACATAAAATCGGAATGCCTCTGGGCAGCATTTGCTTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8885097 55 - 16357246 AGTGCTAAGTA--GCTTAACAGGAAAAATCGGAATGCCTCTGGGCAGCACTTGCTTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1371068 55 - 1807191 GGTGCTAAGTA--GCTTAACAGGTAAAACTGGAATGCCTCTGGGCAGCATTTGCTTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 49169 55 + 5963231 GGTGCTAAGTA--GCTTAACAGGTAAAATCGGAATGCCTCTGGACAGCACTTGCTTC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5740061 53 + 108171978 AATGCTAAGTG--GTGTAACAGGTAAAACGGGAGTGCTG--AAACAGTACTGGCTGC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5104498 53 - 6317780 AGTGCTAAGTG--GTGTAACAGGTAAAATGGGAGCGCTA--GAGCAGCACTGGCTGC i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46119678 49 - 69331447 GGTGCTAAGTG--GCACAACAGGCATAATGGGAGTGCTG------GGGACTTGCTGC i canFam3.chr10 I 13 C 0 e mm10.chr15 82837864 1925 + 104043685 I e dasNov3.JH570235 97987 2768 + 1056298 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=872188.000000 s hg38.chr22_GL383582v2_alt 106462 78 + 162811 CTGGGG----------AATGA-GGTGACAGGTGAG-CTGGTTTT-AAATCGATGTGCTTTTCACA---AATAATAGTGGATTAAAATGCC--CAGG s panTro5.chr22 28886368 78 + 37823149 CTGGGG----------AATGA-GGTGACAGGTGAG-CTGGTTTT-AAATCGATGTGCTTTTCACA---AATAATAGTGGATTAAAATGCC--CAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41160964 79 + 50109623 CTGGGG----------AATGAGGGTGACAGGTGAG-CTGGTTTT-AAATCGATGTGCTTTTCACA---AATAATAGTGGATTAAAATGCC--CAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183793 78 + 4464012 CTGGGG----------AATGA-GGTGACAGGTGAG-CTGGTTTT-AAATCGATGTGCTTTTCACA---AATAACAGTGGATTAAAATGCC--CAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679563 75 - 115148730 CTAGGG----------AATGA-GGTGACAGGTGAG-CTGGTTTT-AAATCCATGTGCTTTTCACA---AAT---AGTGGATTAAAATGCC--CAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294429 77 + 92844088 CTGGGG----------GATGA-GGTGACAGGTGAG-CTGGTTTT-AAATCCACGTGCTTTTCACA---AAT---AGTAGATTAAAATGCTCACAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87639077 77 - 96509753 CTGGGG----------GATGA-GGTGACAGGTGAG-CTGGTTTT-AAATCCACGTGCTTTTCACA---AAT---AGTAGATTAAAATGCTCACAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130879 77 - 13098629 CTAGGG----------GATGA-GGTGACAGGTGAG-CTGGTTTT-AAATCCACGTGCTTTTCACA---AAT---AGTAGATTAAAATGCTCACAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097679 77 - 4483953 CTGGGG----------GATGA-GGTGACAGGTGAG-CTGGTTTT-AAATCCACGTGCTTTTCACA---AAT---AGTAGATTAAAATGCTCACAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728327 75 + 33263144 CTGGGG----------GATGA-GGTGACAGGTGAG-CTGGTTTT-AAATCCAAGTGCTTTTCACA---AAT---AGTAGACTAAAATGCT--CAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009029 77 - 14338769 CTGGGG----------GATGA-GGTGACAGGTGAG-CTGGTTTT-AAATCCACGTGCTTTTCACA---AAT---AGTAGATTAAAATGCTCACAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 946960 78 + 1946073 CTGGGG----------GATGA-GGTGACAGGTGAG-CTGGTTTT-aaatccacgtgcttttcacaaataat---agtagattaaaatgcc--caga i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974619 88 - 2117846 GCGGGGGTAGGGGGGAAATGA-GGTAACAGGTGAG-CTGGTTTT-AAATCAATGAGCTTCTCACA---AACAACAGTGGATTAAAATGCC--TAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8885152 78 - 16357246 CTGGGG----------AATGA-GGTAACAGGTGAG-CTGGTTTT-AAATCAATGAGCTTTTCACA---AACAGCAGTGGATTAAAATGCC--CAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1371123 78 - 1807191 CTGGGG----------AATGA-GGTAACAGGTGAG-CTGGTTTT-CAATCAATGAGCTTTCCACA---AACAACAGTGGATTAAAATGCC--CAGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 49224 78 + 5963231 CTGGGG----------AATGA-GGTAACAGGTGAG-CTGGTTTT-AAATCAATGAGCTTTTCACA---AACAACAGTGGATTAAAATGCC--CAGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5740114 77 + 108171978 CTAGGG-----------ACCA-GGGGTCAGGTGAG-CTGGTTTTAAAATCCACGTGCTTTTCGTC---AATAATAGTGGATT-AAATACC--CAGG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5104551 77 - 6317780 CTGGGG-----------ACCA-GGGGACAGGTGAG-CTGGTTTTAAAATCAATGTGCTTTTCATC---AATAATAATGGATT-AAATGCC--CAGG i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46119727 61 - 69331447 CTGGGA----------AACCG-GGTGACAGGTGAG-CTATCTTT---TTAAATGTGCTTTTCATG---AAT---------------AGCT--CAGG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 100755 78 + 1056298 CTAGTG----------AGTG--GCTAACAGAAGAGCCTTGCTAG-AAATCAATGTAATTTCCATG---ATCAATAGTGGACTGAAATGCC--CAGG i dasNov3.JH570235 I 2768 C 0 e mm10.chr15 82837864 1925 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=1817769.000000 s hg38.chr22_GL383582v2_alt 106540 137 + 162811 CCTGCTCTCTGAAGAGGAGGG----AGA--CACAAAGTCTTATATCAGCAAACAAATACATTTCATTTTTGAGGGGT-------------TGCCCTTTCAAAGCATT-AG-----TATATTTTTATTACTTCAATAAAGAACCCTACCTAGAAACAAGCAAA s panTro5.chr22 28886446 137 + 37823149 CCTGCTCTCTGAAGAGGAGGG----AGA--CACAAAGTCTTATATCAGCAAACAAATACATTTCATTTTTGAGGGGT-------------TGCCCTTTCAAAGCATT-AG-----TATATTTTTATTACTTCAATAAAGAACCCTACCTAGAAACAAGCAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41161043 137 + 50109623 CCTGCTCTCTGAAGAGGAGGG----AGA--CACAAAGTCTTATATCAGCAAACAAATACATTTCATTTTTGAGGGGT-------------TGCCCTTTCAAAGCATT-AG-----TATATTTTTATTACTTCAATAAAGAACCCTACCTAGAAACAAGCAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3183871 137 + 4464012 CCTGCTCTCTGAAGAGGAGGG----AGA--CACAAAGTCTTATATCAGCAAACAAATACATTTCATTTTTGAGGGGT-------------TGCCCTTTCAAAGCATT-AG-----TATATTTTTATTACTTCAATAAAGAACCCTACCTAGAAACAAGCAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679638 137 - 115148730 CCTGCTCTCTGAAGAGGAGGG----AGA--CACAAAGTCTTATGTCAGCAAACAAGTACATTTCATTTTTGAGGGGT-------------TGCCCTTTCAAAGCATT-AG-----TATATTTTTATTACTTCAATAAAGAAACCTACCTAGAAACAAGCAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294506 137 + 92844088 CCTGCTCTCTGAAGAAAAGGG----AGA--CACAAAGTCTTCCGTTAGCAAACAAATACATTTCATTTTTGCGGAGT-------------TGCCCTTTTAAAGCACT-AG-----TATATTTTTATTACTTCAATAAAGAACCCTACCTAGAAACAAGCAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87639154 137 - 96509753 CCTGCTCTCTGAAGAGAAGGG----AGA--CACAAAGTCTTCCGTTAGCAAACAAATACATTTCATTTTTGCGGAGT-------------TGCCCTTTTAAAGCACT-AG-----TATATTTTTATTACTTCAATAAAGAACCCTACCTAGAAACAAGCAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7130956 137 - 13098629 CCTGCTCTCTGAAGAGAAGGG----AGA--CACAAAGTCTTCCGTTAGCAAACAAATACATTTCATTTTTGCGGAGT-------------TGCCCTTTTAAAGCACT-AG-----TATATTTTTATTACTTCAATAAAGAACCCTACCTAGAAACAAGCAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097756 137 - 4483953 CCTGCTCTCTGAAGAGAAGGG----AGA--CACAAAGTCTTCCGTCAGCAAACAAATACATTTCATTTTTGCGGAGT-------------TGCCCTTTTAAAGCACT-AG-----TATATTTTTATTACTTCAATAAAGAACCCTACCTAGAAACAAGCAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728402 137 + 33263144 CCTGCTCTCTGAAGAGAAGGG----AGA--CACAAAGTCTTCCGTCAGCAAACAAATACATTTCATTTTTGCGGAGT-------------TGCCCTTTTAAAGCACT-AG-----TATATTTTTATTACTTCAATAAAGAACCCTACCTAGAAACAAGCAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009106 137 - 14338769 CCTGCTCTCTGAAGAGAAGGG----AGA--CACAAAGTCTTCCGTCAGCAAACAAATACATTTCATTTTTGCGGAGT-------------TGCCCTTTTAAAGCACT-AG-----TATATTTTTATTACTTCAATAAAGAACCCTACCTAGAAACAAGCAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947038 150 + 1946073 cctgctctctgaagagaaggg----aga--cacaaagtcttctgtcagcaaacaaatacatttcaattttgaggaGTTTTAAAGCATTAGTATATTTTTAAAGCATT-AG-----TATATTTTTATTACTTCAATAAAGAACCCTACCTAGAAACAAGCAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974707 135 - 2117846 CCTGTTCTCTGAAGAGAAGGG----AGA--CACAAAGTCTTGTGCCAGCCAACAAATGCGTTTCATTTTTGAGGGCT-------------T--CATTTCAAAGCATT-AG-----TATATTTTTATTACTTCGATAAGGAACCCTACCTACAAACAAGCAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8885230 131 - 16357246 CCTGTTCTCTGAAGAGAAGGG----AGA--CAC--AGTCTTGTGCCAGCAAACAAATAA----CGTTTTTGAGGGGT-------------TGCCCTTTCAAAGCATT-AG-----TATATTTTTGTTACTTTAATAAGGAATCTTACCTAGAAACAAGCAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1371201 137 - 1807191 CCTGTTCTCTGAAGAGAAGGG----AGA--CACAAAGTCTTGTTCCAGCAAACAAATACATTTCATTTTTGAGGGGT-------------TGCCCTTTCAAAGCATT-AG-----TATGTTTTTATTACTTGAATAAGGAATCCTACCTAGAAACAACCAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 49302 137 + 5963231 CCTGTTCTCTGAAGAGAAGGG----AGA--CACAAAGTCTTGTGCCAGCAAACAAATACATTTCATTTTTGAGGGGT-------------TGCCCTTTCAAAGCATT-AG-----TATATTTTTATTACTTCAATAAGGAACCCTACCTAGAAACAAGCAAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5740191 122 + 108171978 CCTG--CTGTGAGGAGAAGGG----AGGTATGCAAAGTCTTGTGCCAGCAAACAAATACATTTCAT------------------------T----TTCCAAAGCATT-AA-----TATATTTTTATTCCTTCGATAAGAAACTCTGCCTAGAAACAAGCAAA i micMur3.chr7 C 0 I 96 s proCoq1.NW_012136747v1 5104628 120 - 6317780 CCTG--CTGTGAGCAGAAGGG----AGG--TGCAAAGTCTTGTGCCAGCAAACAAATACATTTCAT------------------------T----TTTCAAAGCATT-AA-----TGTATCTTTATTCCTTCGATAAGGAACTCTGCCCAGAAACAAGCAAA i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82839789 130 + 104043685 cctgctTTCTA---AGATGGG----AGG--TGCCAAGTTTCCCAGTAACAAATAGAT---TTCAAATTTTGAGGGGC-------------TGCCTTTTCAGAATGTTGGG-----TGTATTTTTATTTCTTCACCCGGAAAGTCTACT--AAATTCAACAAA i mm10.chr15 I 1925 C 0 s canFam3.chr10 46119788 120 - 69331447 -CTG-----------GCTGGG----AGA--TGC--AGTCTTGT-TTGGTAAACAAATATAGT--GTTTTTGAGGGGC-------------TGCTTCTTCAAAGTAGT-AG-----TATATTTTGATTTCTTCCAGGGGGAACTCTACCTAGAAACAAGCAAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 100833 141 + 1056298 CCTGCTGTCTGAGGGGAAAGGAAAAAGG--TACAAAGCTTTGTGCCAATGAACAAACCCATTTCGTTTTTGAGGGGC-------------TGCTCTTTCAAAGTGTT-AATGTATTGTATTTTTATAGCTTCCAGAGGGAACTCTACCTAGAAACAA----- i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36316700 270 - 42659167 I a score=737926.000000 s hg38.chr22_GL383582v2_alt 106677 84 + 162811 CAGAAT-AATTTGGGAACTGT---CCTATCACTTAT--CCTAATGAATTACACTATTATCCTAGC-AACCAGC-----------TTTGTAT------------G-AAAAAACAAA s panTro5.chr22 28886583 84 + 37823149 CAGAAT-AATTTGGGAACTGT---CCTATCACTTAT--CCTAATGAATTACACTATTATCCTAGC-AACCAGC-----------TTTGTAT------------G-AAAAAACAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41161180 84 + 50109623 CAGAAT-AATTTGGGAACTGT---CCTATCACTTAT--CCTAATGAATTACACTATTATCCTAGC-AACCAGC-----------TTTGTAT------------G-AAAAAACAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184008 84 + 4464012 CAGAAT-AATTTGGGAACTGT---CCTATCACTTAT--CCTAATGAATTACACTATTATCCTAGC-AACCAGC-----------TTTGTAT------------G-AAAAAACAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679775 84 - 115148730 CAGAAT-AATTTGGGAACTGT---CCTATCACTTAT--CCTAATGAATTACACTATTATCCTAGC-AACCAGC-----------TTTGTAT------------G-AAAAAACAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294643 81 + 92844088 CAG----AATTTGGCAACTAT---CCTATCACTTAT--CCTAATGAATTACACTATTATCCTAGC-AACCAGC-----------TTTGTAT------------G-AAAAAACAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87639291 82 - 96509753 CAG----AATTTGGCAACTAT---CCTATCACTTAT--CCTAATGAATTACACTATTATCCTAGC-AACCAGC-----------TTTGTAT------------GAAAAAAACAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131093 81 - 13098629 CAG----AATTTGGCAACTAT---CCTATCACTTAT--CCTAATGAATTACACTATTATCCTAGC-AACCAGC-----------TTTGTAT------------G-AAAAAACAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097893 81 - 4483953 CAG----AATTTGGCAACTAT---CCTATCACTTAT--CCTAATGAATTACACTATTATCCTAGC-AACCAGC-----------TTTGTAT------------G-AAAAAACAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728539 85 + 33263144 CAGAATTAATTTGGCAACTAT---CCTATCACTTAT--CCTAATGAATTACACTATTATCCTAGC-AACCAGC-----------TTTGTAT------------G-AAAAAACAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009243 81 - 14338769 CAG----AATTTGGCAACTAT---CTTATCACTTAT--CCTAATGAATTACACTATTATCCTAGC-AACCAGC-----------TTTGTAT------------G-AAAAAACAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947188 85 + 1946073 CAGAATTAATTTGGCACCTAT---CCTATCACTTAT--CCTAATGAATTACACTATTATCCTAGC-AACCAGC-----------TTTGTAT------------G-AAAAAACAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974842 83 - 2117846 C--AAT-ATTTTGGTGACTGT---CTTAACACTCAT--CCTAACAAATTACACTATTATCCTAGCAAACCAGT-----------TTTGTAT------------G-AAAAAACAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8885361 85 - 16357246 CAGAAT-ATTTTGGTGACTGT---CTTAACACTTAT--CCTAACAAATTACACTATTTTGCTAGCAAACCAGT-----------TTTGTAT------------G-AAAAAACAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1371338 86 - 1807191 CAGAAT-ATTTTGGTGACTGT---CTTAACACTTAT--CCTAACAAATTACACTATTATCCTAGCAAACCAGT-----------TTTGTAT------------GAAAAAAACAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 49439 85 + 5963231 CAGAGT-ATTTTGGTGACTGT---CTTAACACTTAT--CCTAACAAATTACACTATTATCCTAGCAAACCAGT-----------TTTGTAT------------G-AAAAAACAAA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5104748 97 - 6317780 AAGAAT-CATTTGTCAATTAT---ACTACTGCTTAT--CCTAATTAACTACAGTATTATCCTAGCAAACCAGCTGTAATTAGTTTTTGTAT------------GGAAAAAACCAA i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82839919 74 + 104043685 GGGAGT-CACCTAGCAATTATCGCCTTGTTAATTATTACCTGCTAAAGGGTTCTA-----------AAACAGT-----------TTTGTAC------------A-AGTTG----- i mm10.chr15 C 0 C 0 s canFam3.chr10 46119908 88 - 69331447 GAGAAC-TAACTGACAATTCT---TCTGTTGCTTAC--ATTAATAA------CTATTATCCCAAC---TCAGC-----------TTTAAGTAGTTTTTGAACAG-CAACAACAAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 100974 30 + 1056298 ---------------------------AGCACTT----CCTGGGAAAG---GCTATTACCCTAT--------------------------------------------------- i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5740313 96 + 108171978 I a score=539441.000000 s hg38.chr22_GL383582v2_alt 106761 36 + 162811 AATAACTTTCAAGCAAACCAGAGGCC-TTCACCTGAC s panTro5.chr22 28886667 36 + 37823149 AATAACTTTCAAGCAAACCAGAGGCC-TTCACCTGAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41161264 36 + 50109623 AATAACTTTCAAGCAAACCAGAGGCC-TTCACCTGAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184092 36 + 4464012 AATAACTTTCAAGCAAACCAGAGGCC-TTCACCTGAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679859 36 - 115148730 AATAACTTTCAAGCAAACCAGAGGCC-TTCACCTGAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294724 36 + 92844088 AATAACTTTCAAGCAAACCAGAGGCC-TTCACCTGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87639373 36 - 96509753 AATAACTTTCAAGCAAACCAGAGGCC-TTCACCTGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131174 36 - 13098629 AATAACTTTCAAGCAAACCAGAGGCC-TTCACCTGAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4097974 36 - 4483953 AATAACTTTCAAGCAAACCAGAGGCC-TTCACCTGAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728624 36 + 33263144 AATAACTTTCAAGCAAACCAGAGGCC-TTCACCTGAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009324 36 - 14338769 AATAACTTTCAAGCAAACCAGAGGCC-TTCACCTGAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947273 36 + 1946073 AATAACTTTCAAGCAAACCAGAAGCC-TTCACCTGAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974925 36 - 2117846 AGTAACTTTCAAGCAAACCAGAGGCC-TCCACCTGAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8885446 37 - 16357246 AATAAATTTCAAGCAAACCAGAGGCCTTCCACCTGAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1371424 36 - 1807191 AATAACTTTCAAGCAAACCAGAGGCC-TTCACCTGAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 49524 36 + 5963231 AATTACTTTCAAGCAAACCAGAGGCC-TTCACCTGAC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5740409 36 + 108171978 AATAACTTCCAAGCAAACCAGAGGCC-TTCACCTGAC i micMur3.chr7 I 96 I 23 s proCoq1.NW_012136747v1 5104845 36 - 6317780 AATAACTTCCAAGCAAACCAAAGGCC-TTCACCTGAC i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82839993 30 + 104043685 AGTAACTTTTACTCAGA------ACT-TTTACTCGGT i mm10.chr15 C 0 C 0 s canFam3.chr10 46119996 36 - 69331447 AACAACTTGCAAGTGAACCAAAGGCC-TCCACCTGAC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101004 16 + 1056298 ----------------ATCAAGGACC-TTCAAA---- i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36316700 270 - 42659167 I a score=373079.000000 s hg38.chr22_GL383582v2_alt 106797 31 + 162811 ATGTGTCTGAACTAAGATTTAAGGTTCACAA s panTro5.chr22 28886703 31 + 37823149 ATGTGTCTGAACTAATATTTAAGGTTCACAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41161300 31 + 50109623 ATGTGTCTGAACTAATATTTAAGGTTCACAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184128 31 + 4464012 ATCTGTCTGAACTAAGATTTAAGGTTCACAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679895 31 - 115148730 ATCTGTCTGAACTAAGATTTAAGGTTCACAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294760 31 + 92844088 ATCTGTCTGAACTAAGATTTAAGGTTCACAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87639409 31 - 96509753 ATCTGTCTGAACTAAGATTTAAGGTTCACAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131210 31 - 13098629 ATCTGTCTGAACTAAGATTTAAGGTTCACAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098010 31 - 4483953 ATCTGTCTGAACTAAGATTTAAGGTTCACAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728660 31 + 33263144 ATCTGTCTGAACTAAGATTTAAGGTTCACAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009360 31 - 14338769 ATCTGTCTGAACTAAGATTTAAGGTTCACAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947309 31 + 1946073 ATCTGTCTGAACTAAGATTTAAGGTTCACAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974961 31 - 2117846 ATCTGTCTGAAATAAGTTTTAAGGTTCATAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8885483 31 - 16357246 ATCTGTCTGAACTAAGCTTTGAGGTTCATAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1371460 31 - 1807191 ATCTGTATGAACTAAGCTTTAAGGTTCATAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 49560 31 + 5963231 ATCTGTCTGAACTAAGCTTTAAGGGTCATAA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5104881 29 - 6317780 --CCGAATGAATCAAGATTTAAACTTCACAG i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82840023 8 + 104043685 ---------------------TGGTTTAT-- i mm10.chr15 C 0 C 0 s canFam3.chr10 46120032 31 - 69331447 ATCTGTCTCAACCAAGATTTAAACTTCACAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101020 31 + 1056298 ATCTGTCTGAAACAAGATTTAAACATCACAG i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5740445 23 + 108171978 I a score=4797984.000000 s hg38.chr22_GL383582v2_alt 106828 368 + 162811 TCACAGCTTTCAAAGTCTGGAACCACAT-GGCACCCCTAGGGAGCCAGCCACAATGAATAG--GCCTGAGACTTGTTAGATGAATAT--ACATTTTACTAGAAA------CTTCCACTAGC-------------TGC----TCCGTGAGAAACACA-TAACAGAGATGAAATGCCTCCACCGCTGAACAATGTCAGGGCACCCAGGTCCCACTGGTGGTGCTAGTCCATCAGAAGGGACTAGCACCACTTCAG-----ATTTG--AGTTCGGCTGGAAATTTGTTATTCTGTTGACCCTGGTATTGT-CTATCTGC-----CTGTGTAGCAGTTCTTCAATTCTATTTTCATAAGGCACGTTAACTGACAGCAGTATGCTGCCAACATCTTCAAATTAAGTGTCAGCTCT s panTro5.chr22 28886734 366 + 37823149 TCACAGCTTTCAAAGTCTGGAACCACAT-GGCACCCCTAGGGAGCCAGCCACAATGAACAG--GCCTGAGACTTGTTAGATGAATAT--ACATTTTACTAGAAA------CTTCCACTAGC-------------TGC----TCAGTGA--AACACA-TAACAGAGATGAAATGCCTCCACCGTTGAACAATGTCAGGGCACCCAGGTCCCACTGGTGGTGCTAGTCCATCAGAAGGGACTAGCACCACTTCAG-----ATTTG--AGTTCGGTTGGAAATTTGTTATTCTGTTGACCCTGGTATTGT-CTATCTGC-----CTGTGTAGCAGTTCTTCAATTCTATTTTCATAAGGCACGTTAACTGACAGCAGTATGCTGCCAACATCTTCAAATTAAGTGTCAGCTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41161331 366 + 50109623 TCACAGCTTTCAAAGTCTGGAACCACAT-GGCACCCCTAGGGAGCCAGCCACAATGAACAG--GCCTGAGACTTGTTAGATGAATAT--ACATTTTACTAGAAA------CTTCCACTAGC-------------TGC----TCAGTGA--AACACA-TAACAGAGATGAAATGCCTCCACCGTTGAACAATGTCAGGGCACCCAGGTCCCACTGGTGGTGCTAGTCCATCAGAAGGGACTAGCACCACTTCAG-----ATTTG--AGTTCGGTTGGAAATTTGTTATTCTGTTGACCCTGGTATTGT-CTATCTGC-----CTGTGGAGCAGTTCTTCAATTCTATTTTCATAAGGCACGTTAACTGACAGCAGTATACTGCCAACATCTTCAAATTAAGTGTCAGCTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184159 365 + 4464012 TCACAGCTTTCAAAGTCTGGAACCACAT-GGCACCCCTAGGGAGCCAGCCACAATGAACAG--GCCTGAGACTTGTTAGATGAATAT--ACATTTTACTAGAAA------CTTCCACTAGC-------------TGC----TCAGTGA--AACACA-TAACAGAGATGAAATGCCTCCACCGCTGAACAATGTCAGGGCACCCAGGTCCCACTGGTGGTGCTAGTCCATCAGAAGGGACTAGCACCACTTCAG-----ATTTG--AGTTCGGTTGGAAATTTGTTATTCTGTTGA-CCTGGTATTGT-CTATCTGC-----CTGTGTAGCAGTTCTTCAATTCTATTTTCATAAGGCACGTTGACTGACAGCAGTATGCTGCCAACATCTTCAAATTAAGTGTCAGCTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106679926 366 - 115148730 TCACAGCTTTCAAAGTCTGGAACCACAT-GGCACCCCTAGGGAGCCAGCCACAATGAACAG--ACCTGAGACTTGTTAGATGAATAT--ACATTTTACTAGAAA------CTTCCACTGGC-------------TGC----TCAGTGA--AACACA-TAACAGAGATGAAATGCCTCCACCGTTGAACAATGTCAGCGCACCCAGGTCCCACTGGTGGTGCTAGTCCATCAGAAGGGACTAGCACCACTTCAG-----ATTTG--AGTTCTGTTGAAAATCTGTTATTCTGTTGACCTTGGTATTAT-CTATCTGC-----CTGTGTAGCAGTTCTTCAATTCTATTTTCATAAGGCATGTTAACTGACAGCAGTATGCTGCCAACATCTTCAAATTAAGTGTCAGCTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84294791 366 + 92844088 TCACAGCTTTCGAAGTCTGAAACCACAT-GGCACCCCCAGGGAGCCAGCCACAATGAACAG--GCCTGAGACTTGTTAGATGAATAT--ACATTTTACTAGAAA------CTTCCACTAGC-------------TGC----TCCGTGA--AACATG-TAACAGAGATGAAATGCCTCCACGGTTGAACAATGTCAGGGCACCCAGGTTCCACTGGTGGTGCTAGTCCATCAGAAGGGAGTAGCACCACTTCAG-----ATTTG--AGTTCTGTTGGAAATTTGTTATTTTGTTGACTTTGGTATTGT-TTATCTGC-----CTGTGTAGCAGTTCTTCAAATCTATTTTAATAAGGCATGTTAACTGACAGCAGTATGCTGCCAACATCTTCAAATTAAGTGACAGCTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87639440 366 - 96509753 TCACAGCTTTCGAAGTCTGAAACCACAT-GGCACCCCCAGGGAGCCAGCCACAATGAACAG--GCCTGAGACTTGTTAGATGAATAT--ACATTTTACTAGAAA------CTTCCACTAGC-------------TGC----TCAGTGA--AACATG-TAACAGAGATGAAATGCCTCCACAGTTGAACAATGTCAGGGCACCCAGGTTCCACTGGTGGTGCTAGTCCATCAGAAGGGAGTAGCACCACTTCAG-----ATTTG--AGTTCTGTTGGAAATTTGTTATTTTGTTGACTTTGGTATTGT-TTATCTGC-----CTGTGTAGCAGTTCTTCAAATCTATTTTAATAAGGCATGTTAACTGACAGCAGTATGCTGCCAACATCTTCAAATTAAGTGACAGCTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131241 366 - 13098629 TCACAGCTTTCGAAGTCTGAAACCACAT-GGCACCCCCAGGGAGCCAGCCACAATGAACAG--GCCTGAGACTTGTTAGATGAATAT--ACATTTTACTAGAAA------CTTCCACTAGC-------------TGC----TCCATGA--AACATG-TAACAGAGATGAAATGCCTCCACAGTTGAACAATGTCAGGGCACCCAGGTTCCACTGGTGGTGCTAGTCCATCAGAAGGGAGTAGCACCACTTCAG-----ATTTG--AGTTCTGTTGGAAATTTGTTATTTTGTTGACTTTGGTATTGT-TTATCTGC-----CTGTGTAGCAGTTCTTCAAATCTATTTTAATAAGGCATGTTAACTGACAGCAGTATGCTGCCAACATCTTCAAATTAAGTGACAGCTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098041 366 - 4483953 TCACAGCTTTTGAAGTCTGAAACCACAT-GGCACCCCCAGGGAGCTAGCCACAATGAACAG--GCCTGAGACTTGTTAGATGAATAT--ACATTTTACTAGAAA------CTTCCACTAGC-------------TGC----TCAGTGA--AACATG-TAACAGAGATGAAATGCCTCCACAGTTGAACAATGTCAGGGCACCCAGGTTCCACTGGTGGTGCTAGTCCATCAGAAGGGAGTAGCACCACTTCAG-----ATTTG--AGTTCTGTTGGAAATTTGTTATTTTGTTGACTTTGGTATTGT-TTATCTGC-----CTGTGTAGCAGTTCTTCAAATCTATTTTAATAAGGCATGTTAACTGACAGCAGTATGCTGCCAACATCTTCAAATTAAGTGACAGCCCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24728691 367 + 33263144 TCACAGCTTTCGAAGTCTGAAACCACAT-GGCACCCCCAGGGAGCCAGCCACAATGAACAG--GCCTGAGACTTGTTAGATGAATAT--ACATTTTACTAGAAA------CTTCCACTAGC-------------TGC----TCAGTGA--AACATG-TAACAGAGATGAAATGCCTCCACAGTTGAACAATGTCAGGGCACCCAGGTTCCACTGGTGGTGCTAGTCCATCAGAAGGGACTAGCACCACTTCAGTCCTCATTTG--AGTTCTGTTGGAAATTTGTTATTTTGTTGACTTTGGTA-----TTATCTGC-----CTGTGTAGCAGTTCTTCAAATCTATTTTAATAAGGCATGTTAACTGACAGCAGTATGCTGCCAACATCTTCAAATTAAGTGACAGCTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009391 366 - 14338769 TCACAGCTTTCGAAGTCTGAAACCACAT-GGCACCCCCAGGGAGCCAGCCACAATGAACAG--GCCTGAGACTTGTTAGATGAATAT--ACATTTTACTAGAAA------CTGCCACTAGC-------------TGC----TCAGTGA--AACATG-TAACAGAGATGAAATGCCTCCACAGTTGAACAATGTCAGGGCACCCAGGTTCCACTGGTGGTGCTGGTCCATCAGAAGGGAGTAGCACCACTTCAG-----ATTTG--AGTTCTGTTGGAAATTTGTTATTTTGTTGACTTTGGTATTGT-TTATCTGC-----CTGTGTAGCAGTTCTTCAAATCTATTTTAATAAGGCATGTTAACTGACAGCAGTATGCTGCCAACATCTTCAAATTAAGTGACAGCTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947340 348 + 1946073 TCACAGCTTTCGAAGTCTGGAACCACAT-GGCACCCCCAGGGAGCCAGTCACAATGAACAG--GCCTGAAACTTGTTAGATGAATAT--ACATTTTACTAGAAA------CTTCCACTAGC-------------TGC----TCAGTGA--AACATG-TAACAGAGATGAAATGCCTCCACAGTTGAACAATGTCAGGGCACCCAGGTTCCACTGGTGGCAC--GTCCATCAGAAGGG---------------------ATTTG--AGTTCTGTTGGAAATTTGTTATTCTGTTGACTTTGGTATTGT-TTATCTGC-----CTGTTTAGCAGTTCTCCAAATCTATTTTAATAAGGCATGTTAACTGACAGCAGTATGCTGCCAGCATCTTCAAATTAAGTGTCAGCTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1974992 354 - 2117846 TCACAGCTTTCAAAGTCTAGAACAACAT-----------GGGAGCCAGCCACAATGAACAA--GCCTGAGACTCATTAGATGAAAAT--ACATTTGACTAGAAA------TTTCCACTAGT-------------TGC----TTAGTGA--AACATG-TA--AGAGATGAGATGCCTCCAAAGTTGAACAATGTCAGGGCAGCCAGATCCCACCGGTGGTGCCAGTCCATCAGAAGGGACCAGCACCACTTCAG-----ATTTT--AGTTCCACTGGAAATTTGTCATTCTGTTGACCTTGGTATTGT-CTATCTGC-----CTATGTAGCAGTTCTTCAGTTCTATTTTCATAAGGCATGTTAATTGACAGCAGTATGCAGCCAATGCTTTCAGGTTAAGGGTCAGCTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8885514 356 - 16357246 TCACAGCTTTCAAAGTCTGGAACCACAT-----------GGGAGCCAGCCACAATGAACAA--GCCTGAGACTCGTTTGATGAATAT--AAATTTGACTAGAAA------CTTGCACTAGT-------------TGC----TCAGTGA--AACATG-TAAGAGAGATGAGATGCCTCCGAAGTTGAACAATGTCAGGGTAGCCAGATCCCACCGGTGGTGCTAGTCCATCAGAAGGGACAAGCACCACTTCAG-----ATTTT--AGTTCCATTGGAAATTTGTTATTCTGTTGACCTTGGTATTGT-CTATCTGC-----CTATGCAGCAGTTCTTCAGTTCTATTTTCATAAGGCATGTTAACTGACAGCAGTATGCTGCCAACACTTTCAAGTTAAGGGTCAGCTCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1371491 356 - 1807191 TCACAGCTTTGAAAGTCTGGAACCACAC-----------GGGAGCCAGCCACAATGAACAA--GCCTGAGACTCGTTAGATGAATAT--ACATTTGACTAGAAA------CTTCCACTAGT-------------TGC----TCAGTGA--AACATG-TAAGAGAGATGAGATGCCTCCAAAGTTGAACAACGTCAGGACTGCCAGATCCCACCGGTAGTGCTAGTCCAACAGAAGGGACCAGCACCACTTCTG-----ATTTT--AGTCCCATTGGAAATTTGTTATTCTGTTGACCTTGATATTAT-CTATCTGC-----CTATGCAGCAGTTCTTCAGTTCTATTTTCATAAGGCATGTTAACTGACAGCAGTATGCTGCCAACACTTTCAAGTTAAGGGTCAGCTCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 49591 356 + 5963231 TCACAGCTCTCAAAGTCTGGAACCACAT-----------GGGAGCCAGCCACAATGAACAA--GCCTGAGACTCGTTAGATGAATAT--ACATTTGACTAGGAA------CTTCCACTAGC-------------TGC----TCAGTGA--AACATG-TAAGAGAGATGAGATGCCTCCAAAGTTGAACAATGTCAGGGCAGTCAGATCCCACTGGTGGTGCTAGTCCATCAGAAGGGACCAGCACCACTTCAG-----ATTTT--AGTTCCATTGGAAATTTGTCATTCTGTTCTCCTTGGTACTGT-CTATCTGC-----CTATGTAGCAGTTCTTCAGTTCTATTCTCATAAGGCATGTTAACTGACAGCAATATGCTGCCAACACTTTCAAGTTAAGGGTCAGCTCT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5740468 353 + 108171978 TCACAGTTTTCAAAGTCTGGAACCACCT-GGCACCTCCAAGGGGCCAGCTACAATGAACATCCCCCTGAGACCTTTTAAATGAATAT--GCATTTCCCTAGAAAC----CCTTCCCTTAGC-------------TGC----TCAGTAA--AACACG-TTAGAGAGATGAAATGCCTCCAAAGCTCAAAAATGTCACTGCAACCAGATCCCACT-----------CCCATCAGAAGGTACTAGCACCACTTCAG-----ACTTG--AGT-----TGGAAATTTGTCATTCTGTTGACCTCGGTCTTGT-CCATCTGC-----TTACCTGGCAGTTCTTCAGTTCTATTTTCATAAGGTACCTTAATTGATAGCAGTGTGCTGCCAGCATTCTGAAATTAAGCATTAGCTC- i micMur3.chr7 I 23 C 0 s proCoq1.NW_012136747v1 5104910 351 - 6317780 --ACAGTTTTCAAAATCTGGAACCACCT-GGCACCTCCAAGGAGCCAGCTACAATGAACATCCCCCTGAGACTTTTTAGATGAACTT--TCATTTTACTAGAAAC----CCTTCCATTCGC-------------TGC----TCAGTAA--AACATG-TGAGAGAGATGAAATGCCTCCAAAGCTCAACAATGTCACTGCACCCAGGTCCCACT-----------TCTATCAGAAGGTACTAGCACCACTTCAG-----ACTTG--AGT-----TGGAAATTTGTTATTCTGTTGACCCTGGTCTTGT-CCATCTGC-----TTACGTGGCAGTTCTTCAGTTCTATTTTCATAAGGCACCTTAATTGACAGCAGTATGCTGGCAACATTTTGAAATTACGCGTTAGCTC- i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82840031 318 + 104043685 TCAGAATTTTC--AGTCTAAAAATGCCCAGATGCCTTCACAGATTCAGTCAT-----------GCCCGAGACCCGTT-GAAAAATA---GCATTTAACAAAAAGCATTTCCTTCTACTAGCATCTACTTCCCTTTGCCCTTTTAACAA--AACATG-TAAGAGGGATTTAGTGCC-----AGTAGAGTGGTG------------GGTCCCACT-----------TCTATC-TAAGGGATCTTTATCTTTTGAG-----ATTCA--AGTTGGGTTGGAAATTTGT-------------------------GATCTGCACAAACTATGAGGCAGTTCTTAAATTCTCCTT-----ATTCATTTT--TTGA---CAGTATG-TGCCAACCCCTTCTAGTTAAGCACCAGCTCT i mm10.chr15 C 0 I 84 s canFam3.chr10 46120063 328 - 69331447 GCACAATTTTCAAAGTCTAGAACCAGCT-GGCATCTCCATGGAGCCAGTCACAACGAGCAT--GCCTGTGA---GTTAAATGAACACAGACATGTTACTAGAAACT----CTTCCACTGGC-------------CAC----TTAGTGA--AACATG-TA--GGAAATGAAATGCCTCCAAAGTTG----GTGTCACTGCAGCTGGGTCCCACT-----------CCCATC------------------TTCAA-----ATTTGTTCTTTCAGATGGAAACGGGTCATTGTGTTGACTTTGGTCCCA-------TGC-----TTATGTGGCAGTTCTTCGGTTCTATTCTCATAAGGCACATTACTCGACAGCAGTCTGCTGCCAACATATTCAAATGAAGTGTCAGCTTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101051 356 + 1056298 --ACATTTTTCAAATTCTGGAACCACCT-GACATCTCCATGGAGCCAGTCATAATCAACAC--ATCCGAGACTTGTTAAATGCACAC--CCATTTTACTAGAAACT----CTTCCACTAG--------------TGC----TTAGTGA--ACCAAGTTAAGAGAGATGAAATGCTTCTGGAGCTGAATGATGTCATTACAGCCCGGCCCTACA-----------TCTATCAGAAAAGACCAGAACCACTTCAG-----ACTTC--AGGCAGGTCAAAAATTTATTATTTTGTTGACCCTGATCTTGTGCAATTCGT-----TCACGTGGCAAGTCCTCAGCTCTTTTCTCATAAGGCACAGTACCTGACGGCAGTATGTTGTCAACGTGTTTGAATTAACCATCAGCTCC i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36316700 270 - 42659167 I a score=433660.000000 s hg38.chr22_GL383582v2_alt 107196 31 + 162811 TAAGTGCATACAACCAAAATCACTCCACTAT s panTro5.chr22 28887100 31 + 37823149 TAAGTGCATACAACCAAAATCACTCCACTAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41161697 31 + 50109623 TAAATGCATACAACCAAAATCACTCCACTAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184524 31 + 4464012 TAAGTGCATACAACCAAAATCACTCCACTAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680292 31 - 115148730 TAAGTGCATACAACCAAAATCACTCCACTAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295157 31 + 92844088 TAAGTGCATACAACCAAAATCACTCCACTAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87639806 31 - 96509753 TAAGTGCATACAACCAAAATCACTCCACTAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131607 31 - 13098629 TAAGTGCATACAACCAAAATCACTCCACTAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098407 31 - 4483953 TAAGTGCATACAACCAAAATCACTCCACTAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729058 31 + 33263144 TAAGTGCATACAACCAAAATCACTCCACTAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009757 31 - 14338769 TAAGTGCATACAACCAAAATCACTCCACTAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947688 31 + 1946073 TAAGTGCATACAACCAAAATCATTCCACTAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1975346 30 - 2117846 TAAGTGCATACAACC-AAATCACTGCACTAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8885870 31 - 16357246 TAAGTGCATACAACCAAAATCACTCCACTAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1371847 31 - 1807191 TAAGTGCATACAACCAAAATCACTCCACTAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 49947 31 + 5963231 TAAGTGCATACAATCAGAATCACACCACTAT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5740821 30 + 108171978 -AAGTGCATACGGCCAAAACGAGTCCACTGT i micMur3.chr7 C 0 I 85 s proCoq1.NW_012136747v1 5105261 29 - 6317780 -GAGTGCATACAGCCAAAATGAGTCCACTG- i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46120391 30 - 69331447 TACACGCACACAGCCAAAACCACTCTACTG- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101407 31 + 1056298 TAAGTGCCCAGAGCCATAATCATTCCACTGT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=882203.000000 s hg38.chr22_GL383582v2_alt 107227 86 + 162811 TACCAGGTTTACGT-GGACAGCATCAG----ATAGGGCTGAA-TTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTAGAGACAGGAGGGTT s panTro5.chr22 28887131 86 + 37823149 TACCAGGTTTACGT-GGACAGCATCAG----ATAGGGCTGAA-TTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTAGAGACAGGAGCGTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41161728 86 + 50109623 TACCAGGTTTACGT-GGACAGCATCAG----ATAGGGCTGAA-TTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTAGAGACAGGAGCGTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184555 86 + 4464012 TACCAGGTTTATGT-GGACAGCATCAG----ATAGGGCTGAA-TTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTAGAGACAGGAGGGTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680323 76 - 115148730 TACCAGGTTTACGT-GGACAGCATCAG--------------T-TTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTAGAGAGAGGAGCGTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295188 86 + 92844088 TACCAGGTTTACGT-GGACAGCATCAG----ATAGGGCTGAATTTTTCTCTTCAGTTTAATTTCCA-CCAGTAAGTTTAGAGACAGGAGTG-T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87639837 86 - 96509753 TACCAGGTTTACGT-GGACAGCATCAG----ATAGGGCTGAATTTTTCTCTTCAGTTTAATTTCCA-CCAGTAAGTTTAGAGACAGGAGTG-T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131638 86 - 13098629 TACCAGGTTTACGT-GGACAGCATCAG----ATAGGGCTGAATTTTTCTCTTCAGTTTAATTTCCA-CCAGTAAGTTTAGAGACAGGAGTG-T i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098438 86 - 4483953 TACCAGGTTTACGT-GGACAGCATCAG----ATAGGGCTGAATTTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTAGAGACAGGAGTG-T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729089 86 + 33263144 TACCAGGTTTACGT-GGACAGTATCAG----ATAGGGCTGAATTTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTAGAGACAGGAGTG-T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009788 86 - 14338769 TACCAGGTTTACGT-GGACAGCATCAG----ATAGGGCTGAATTTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTAGAGACAGGAGTG-T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947719 85 + 1946073 TACCAGGTTTATGT--CAGGGCATCAG----ATAGGGCTGAATTTTTCTCTTCAGTTTAACTTCCA-CCAGTAAGTTTAGAGACAGGAGTG-T i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1975376 85 - 2117846 TAGCAGGTTTACCT-GGACAGCATCAG----ATAGGGCTGAC-TTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTACAGACAGGAGCA-T i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8885901 84 - 16357246 TACCAGGTTTACCT-GGGCAGTATCAG----ATATGGCTGA--TTTTCTCTTCGGTTTAATTTCCA-CCAATAAGTTTATGGACAGGAGCG-T i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1371878 85 - 1807191 TAACAGGTTTACCT-GGACAGCATCAA----ATAGGGCTGAC-TTTTCTCTTCAGTTTAATTTCTA-CCAATAAGTTTATGGGCAGGAGCG-T i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 49978 85 + 5963231 TAGCAGGTTTACCT-GGACAGCATCAG----ATAGGGCTGAC-TTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTACGGACAGGAGTG-T i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5105290 90 - 6317780 TACCTGGTTTACTG-GGACAGAGTAACTAACATAGTGCTGAA-TATTCTCTTCAGTTTGGTTCCTACCCAGTAAGCTTAGTGACAGGAATA-C i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46120421 86 - 69331447 TACCTGGCTTACTG-GGACAGGGTCAT----ACAGGGCTGAG-TTTTCTCCTCCGCTTGATTTCTACCCAATGAGCTTAATGACAGGGACA-C i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101438 54 + 1056298 -ACTTGGCTTACTCAAGACAG-GTCAC----ATAGGACTG---TTTTCTCTTTGATTTTTTTT------------------------------ i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5740851 85 + 108171978 I a score=232835.000000 s hg38.chr22_GL383582v2_alt 107313 23 + 162811 ATCTTT----ACTAAACCAACACAT----GA s panTro5.chr22 28887217 23 + 37823149 ATCTTT----ACTAAACCAACACAT----GA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41161814 23 + 50109623 ATCTTT----ACTAAACCAACACAT----GA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184641 23 + 4464012 ATCTTT----ACTAAACCAACACAT----GA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680399 27 - 115148730 ATCTTTACTAACTAAACCAACACAT----GA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295274 23 + 92844088 ATCTTT----ACGAAACCAACACAT----GA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87639923 23 - 96509753 ATCTTT----ACGAAACCAACACAT----GA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131724 23 - 13098629 ATCTTT----ACGAAACCAACACAT----GA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098524 23 - 4483953 ATCTTT----ACGAAACCAACACAT----GA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729175 23 + 33263144 ATCTTT----ACTAAACCAACACAT----GA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009874 23 - 14338769 ATCTTT----ACGAAACCAACACAT----GA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947804 23 + 1946073 ATCTTT----ACTAAACCAACACAT----GA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1975461 21 - 2117846 ATGTTT----ACTAAACCAACACAT------ i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8885985 21 - 16357246 ATGTTT----ACTAAACCAACACAT------ i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1371963 23 - 1807191 ATGTTT----ACTAAACCAACACATGA---- i cebCap1.NW_016107750v1 C 0 I 357 s aotNan1.NW_018512383v1 50063 23 + 5963231 ATGTTT----ACTAAACCAACACAT--GA-- i aotNan1.NW_018512383v1 C 0 I 28 s micMur3.chr7 5740936 23 + 108171978 ATCTTC----ACTAAACCAAAATAT----GA i micMur3.chr7 I 85 C 0 s proCoq1.NW_012136747v1 5105380 23 - 6317780 ATCTTT----ACTAAACCAACATAA----GA i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46120507 23 - 69331447 ATCTCC----ACTAAAATGACATGT----GA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101492 22 + 1056298 AACCCT----AATTATCTAATAATA----G- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=240100.000000 s hg38.chr22_GL383582v2_alt 107336 36 + 162811 GGACACAA--TTCTAAGGCTGATGCTAGGTAGCTCATA s panTro5.chr22 28887240 36 + 37823149 GGACACAA--TTCTAAGGCTGATGCTAGGTAGCTCATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41161837 36 + 50109623 GGACACAA--TTCTAAGGCTGATGCTAGGTAGCTCATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184664 36 + 4464012 GGACACAA--TTCTAAGGCTGATGCTAGGTAGCTCATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680426 33 - 115148730 GGACACAA--TTCTAAGGCTGATGCTAGGTAGCTC--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295297 32 + 92844088 GGACACAA--TTCTAAGGCTGATGC----TAGCTCATA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87639946 32 - 96509753 GGACACAA--TTCTAAGGCTGATGC----TAGCTCATA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131747 32 - 13098629 GGACACAA--TTCTAAGGCTGATGC----TAGCTCATA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098547 32 - 4483953 GGACACAA--TTCTAAGGCTGATGC----TAGCTCATA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729198 32 + 33263144 GGACACAA--TTCTAAGGCTGATGC----TAGCTCATA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009897 32 - 14338769 GGACACAA--TTCTAAGGCTGATGC----TAGCTCATA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947827 32 + 1946073 GGACACAA--TTCTAAGGCTGATGC----TAGCTCATA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1975482 30 - 2117846 -GACACAATTTTCTAAGGCTGATGC----TAGCCC--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8886006 30 - 16357246 -GACACAATTTTCTAAGGCTGATGC----TGGCCC--- i saiBol1.JH378157 C 0 C 0 s micMur3.chr7 5740959 30 + 108171978 GGATACT---TTCTAAGGTTGATAC----CAGCCAAA- i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5105403 30 - 6317780 GGACACT---TTCTAAGGCTGACAC----CAGCCAAA- i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46120530 31 - 69331447 GGACACC---TTCCAGGGCTGACAC----CAGCTCATA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101514 30 + 1056298 TCACACAA--CTTTACTAAAAATAT----AAGGACA-- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 50086 28 + 5963231 I e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e cebCap1.NW_016107750v1 1371986 357 - 1807191 I a score=236011.000000 s hg38.chr22_GL383582v2_alt 107372 19 + 162811 ATATTTGCTTCCTTTAAAA s panTro5.chr22 28887276 19 + 37823149 ATATTTGCTTCCTTTAAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41161873 19 + 50109623 ATATTTGCTTCCTTTAAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184700 19 + 4464012 ATATTTGCTTCCTTTAAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680459 19 - 115148730 ATATTTGCTTCCTTTAAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295329 19 + 92844088 ATATTTGCTTCCTTTAAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87639978 19 - 96509753 ATATTTGCTTCCTTTAAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131779 19 - 13098629 ATATTTGCTTCCTTTAAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098579 19 - 4483953 ATATTTGCTTCCTTTAAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729230 17 + 33263144 ATATTTGCTTCCTTTAA-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009929 19 - 14338769 ATATTTGCTTCCTTTAAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947859 17 + 1946073 ATATTTGCTTCCTTTAA-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1975512 19 - 2117846 ATATTTGCTTCCTTTAAAA i calJac3.chrUn_GL286373 C 0 I 310 s saiBol1.JH378157 8886036 19 - 16357246 GTATTTGCTTTCTTTAAAA i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 50114 19 + 5963231 ATATTTGCTTCCTTTAAAA i aotNan1.NW_018512383v1 I 28 I 310 s micMur3.chr7 5740989 18 + 108171978 ATATTTATTT-CTTTAAGG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5105433 19 - 6317780 ATATTTATTTCCTTTAAGA i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46120561 19 - 69331447 GTACTTACTTCCTTTAAAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101544 19 + 1056298 GTATTTATTTTCCTTAAAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e cebCap1.NW_016107750v1 1371986 357 - 1807191 I a score=113670.000000 s hg38.chr22_GL383582v2_alt 107391 11 + 162811 CCACATCAACT s panTro5.chr22 28887295 11 + 37823149 CCACATCAACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41161892 11 + 50109623 CCACATCAACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184719 11 + 4464012 CCACATCAACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680478 11 - 115148730 CCACATCAACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295348 11 + 92844088 CAACAACAACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87639997 11 - 96509753 CAACAACAACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131798 11 - 13098629 CAACAACAACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098598 11 - 4483953 CAACAACAACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729247 10 + 33263144 -AACAACAACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009948 11 - 14338769 CAACAACAACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947876 10 + 1946073 -AACAACAACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1975841 11 - 2117846 CCACATTAACT i calJac3.chrUn_GL286373 I 310 C 0 s saiBol1.JH378157 8886055 11 - 16357246 TCACATTggct i saiBol1.JH378157 C 0 I 625 s cebCap1.NW_016107750v1 1372343 11 - 1807191 CCACATTAACT i cebCap1.NW_016107750v1 I 357 C 0 s aotNan1.NW_018512383v1 50443 11 + 5963231 CCACATTAACT i aotNan1.NW_018512383v1 I 310 C 0 s micMur3.chr7 5741007 11 + 108171978 GCATATCAACT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5105452 11 - 6317780 CCATATGAACT i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46120580 11 - 69331447 CCATCTCAGCT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101563 11 + 1056298 CCACCTCAACC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=14742.000000 s hg38.chr22_GL383582v2_alt 107402 1 + 162811 C s panTro5.chr22 28887306 1 + 37823149 C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41161903 1 + 50109623 C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184730 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680489 1 - 115148730 C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295359 1 + 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640008 1 - 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131809 1 - 13098629 C i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098609 1 - 4483953 C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729257 1 + 33263144 C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009959 1 - 14338769 C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947886 1 + 1946073 C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1975852 1 - 2117846 C i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1372354 1 - 1807191 C i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 50454 1 + 5963231 T i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5741018 1 + 108171978 C i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5105463 1 - 6317780 C i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46120591 1 - 69331447 C i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101574 1 + 1056298 C i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e saiBol1.JH378157 8886066 625 - 16357246 I a score=1269051.000000 s hg38.chr22_GL383582v2_alt 107403 98 + 162811 AAAAGCTTCCAGGAATAGTTTAGCCTCCACCAAGGAGGCTACTTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTATCATCATCTAATTT s panTro5.chr22 28887307 98 + 37823149 AAAAGCTTCCAGGAATAGTTTAGCCTCCACCAAGGAGGCTACTTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTATCATCATCTAATTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41161904 98 + 50109623 AAAAGCTTCCAGGAATAGTTTAGCCTCCACCAAGGAGGCTACTTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTATCATCATCTAATTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184731 97 + 4464012 AAAAGCTTCCA-GAATAGTTTAGTATCCACCAAGGAGGCTACTTGATGTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTATCATCATCTAATTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680490 98 - 115148730 AAAAGCTTCCAGGAATAGTTTAGTATCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTGAGTTTTATCCTTTACAGTCCTCTATCATCATCTAATTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295360 98 + 92844088 AAAAGCTTCCAAGAGTATTTTAGTATCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTACCATCATTTAATTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640009 98 - 96509753 AAAAGCTTCCAAGAGTATTTTAGTATCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTACCATCATTTAATTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131810 98 - 13098629 AAAAGCTTCCAAGAGTATTTTAGTATCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTTAGTTTTATCCCTTACAGTCCTCTACCATCATTTAATTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098610 98 - 4483953 AAAAGCTTCCAAGAGTATTTTAGTATCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTAACATCATTTAATTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729258 98 + 33263144 AAAAGCTTCCAAGAGTATTTTAGTATCCACCAAGGAGGCTACCTGATTTCGAGCAAAGTTAGTTTTATCCTTTACAGTCCTCCACCATCATTTAATTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14009960 98 - 14338769 AAAAGCTTCCAAGAGTATTTTAGTATCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTACTATCATTTAATTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947887 98 + 1946073 AAAAGCTTCCAAGAGTATTTTAGTACCTACCAAGGATGCTACCTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTACCATCATTTAATTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1975853 93 - 2117846 AAAAGCTCACAGGAA-----TAATATCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTTAGTTTCATCCTTCAGAGTCCTCTATTGTCATCTAATTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8886691 93 - 16357246 aaaaGCTCCCAGGAA-----TAGTGTCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTTAGTTTTATCCTTCAGAGTCCTCTATCATCATCTAATTT i saiBol1.JH378157 I 625 C 0 s cebCap1.NW_016107750v1 1372355 93 - 1807191 AAAAGCTCCCAGGAA-----TAGTGTCCACCAAGGAGTCTACCTGATTTCCAGGAAAGTTAGTTTCATCCTTCAGAGTCCTCTATCGTCATCTAATTT i cebCap1.NW_016107750v1 C 0 I 3 s aotNan1.NW_018512383v1 50455 93 + 5963231 AAAAGCTCCCAGGAA-----TAGCATCCACCAAGGAGGCTACCTGATTTCCAGCGAAGTTAGTTTCATCCTTCAGAGTCCTCGATCGCCATCTAATTT i aotNan1.NW_018512383v1 C 0 I 3 s micMur3.chr7 5741019 91 + 108171978 AAAAGCCTCGAGGAATACTTTAGTGTCCACC-------CTACTTGGTCTCCAGCAGAGTTACTTTTATCCTTAACAGTCCTCTGTCATCATCCAATTT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5105464 98 - 6317780 AAAAGCCTCTAGGAGTAGTTTAGTGTCCACCAAGGAGGCTACTTGGTCTCCAGCAGAGTTACTTGTATCCTTAACAGTCCTCTGTTATTGTCCAATTT i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46120592 95 - 69331447 AAAAGCCTCT--GAATAGTTTAGTGCCCACCAAGAAAGCTACCTAATCTCCAGCAAAGTTAATTTTA-CCCCAACAGTCCTCTGTCACCATCCTATTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101575 98 + 1056298 CAAAGCCTCTAGGAGTAGTTTAGTCCCCATCCAGGGCAGTACTTACTCTCTGGAGAAGTTAATTCTACCCTTAACAGACTGCTGTCATTATCCTATTT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=23014.000000 s hg38.chr22_GL383582v2_alt 107501 3 + 162811 ACA s panTro5.chr22 28887405 3 + 37823149 ACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162002 3 + 50109623 ACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184828 3 + 4464012 ACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680588 3 - 115148730 ACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295458 3 + 92844088 ACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640107 3 - 96509753 ACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131908 3 - 13098629 ACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098708 3 - 4483953 ACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729356 3 + 33263144 ACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14010058 3 - 14338769 ACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947985 3 + 1946073 ACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1975946 2 - 2117846 -CT i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8886784 2 - 16357246 -CT i saiBol1.JH378157 C 0 I 1 s micMur3.chr7 5741110 3 + 108171978 ATA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5105562 3 - 6317780 ATA i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46120687 3 - 69331447 ATA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101673 3 + 1056298 AGA i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 50548 3 + 5963231 I e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e cebCap1.NW_016107750v1 1372448 3 - 1807191 I a score=31499.000000 s hg38.chr22_GL383582v2_alt 107504 11 + 162811 GATGAGAAACt s panTro5.chr22 28887408 11 + 37823149 GATGAGAAACt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162005 11 + 50109623 GATGAGAAACt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184831 11 + 4464012 GATAAGAAACt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680591 11 - 115148730 GATGAGAAACt i nomLeu3.chr7b C 0 C 0 s saiBol1.JH378157 8886787 11 - 16357246 GATAAGAAAAG i saiBol1.JH378157 I 1 C 0 s micMur3.chr7 5741113 11 + 108171978 GACGAAAAACT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5105565 11 - 6317780 GATGAAAAACT i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46120690 11 - 69331447 GATGGGAAAAC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101676 11 + 1056298 GATAAGAAAAC i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 50548 3 + 5963231 I e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e cebCap1.NW_016107750v1 1372448 3 - 1807191 I e calJac3.chrUn_GL286373 1975948 1 - 2117846 I e colAng1.NW_012115588v1 947988 0 + 1946073 C e manLeu1.NW_012102031v1 14010061 0 - 14338769 C e chlSab2.chr19 24729359 0 + 33263144 C e cerAty1.NW_011999588v1 4098711 0 - 4483953 C e macNem1.NW_012012688v1 7131911 0 - 13098629 C e macFas5.chr10 87640110 0 - 96509753 C e rheMac8.chr10 84295461 0 + 92844088 C a score=6552.000000 s hg38.chr22_GL383582v2_alt 107515 2 + 162811 tt s panTro5.chr22 28887419 2 + 37823149 tt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162016 2 + 50109623 tt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184842 2 + 4464012 tt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680602 2 - 115148730 tt i nomLeu3.chr7b C 0 C 0 s micMur3.chr7 5741124 2 + 108171978 TT i micMur3.chr7 C 0 I 113 s proCoq1.NW_012136747v1 5105576 2 - 6317780 TT i proCoq1.NW_012136747v1 C 0 I 128 s canFam3.chr10 46120701 2 - 69331447 TT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101687 2 + 1056298 TT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 50548 3 + 5963231 I e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e cebCap1.NW_016107750v1 1372448 3 - 1807191 I e saiBol1.JH378157 8886798 0 - 16357246 C e calJac3.chrUn_GL286373 1975948 1 - 2117846 I e colAng1.NW_012115588v1 947988 0 + 1946073 C e manLeu1.NW_012102031v1 14010061 0 - 14338769 C e chlSab2.chr19 24729359 0 + 33263144 C e cerAty1.NW_011999588v1 4098711 0 - 4483953 C e macNem1.NW_012012688v1 7131911 0 - 13098629 C e macFas5.chr10 87640110 0 - 96509753 C e rheMac8.chr10 84295461 0 + 92844088 C a score=62681.000000 s hg38.chr22_GL383582v2_alt 107517 114 + 162811 ttttttttttttt----------ttgagatggagtctcgctgtgtcgcccaggctggagggcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctc s panTro5.chr22 28887421 112 + 37823149 ttttttttttttt------------gagacggagtctcactgtgtcgctcaggctggagggcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162018 110 + 50109623 ttttttttttt--------------gagacggagtctcactgtgtcgctcaggctggagggcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184844 116 + 4464012 ttttttttttttt--------ttttgagacggactctcgctgtgtcgcccaggctggagggcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcatgccactctcctgcctc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680604 124 - 115148730 tttttttttttttttttttttttttgagacagagtcttgctctgtcacccaggccggagggcagtggtgcgatctcggctcactgcaagctccgcctcctgggttcacgccattctcctgcctc i nomLeu3.chr7b C 0 C 0 s canFam3.chr10 46120703 25 - 69331447 -------------------------------------------------------------------------------TATCTAAGAGCTC--------------------TCCTAATGCCTC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101689 14 + 1056298 -------------------------------------------------------------------------------TATCTGAACGCTAC------------------------------- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 50548 3 + 5963231 I e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5105578 128 - 6317780 I e micMur3.chr7 5741126 113 + 108171978 I e cebCap1.NW_016107750v1 1372448 3 - 1807191 I e saiBol1.JH378157 8886798 0 - 16357246 C e calJac3.chrUn_GL286373 1975948 1 - 2117846 I e colAng1.NW_012115588v1 947988 0 + 1946073 C e manLeu1.NW_012102031v1 14010061 0 - 14338769 C e chlSab2.chr19 24729359 0 + 33263144 C e cerAty1.NW_011999588v1 4098711 0 - 4483953 C e macNem1.NW_012012688v1 7131911 0 - 13098629 C e macFas5.chr10 87640110 0 - 96509753 C e rheMac8.chr10 84295461 0 + 92844088 C a score=27818.000000 s hg38.chr22_GL383582v2_alt 107631 31 + 162811 agcctccagagtagctgggactacaggtgcc s panTro5.chr22 28887533 31 + 37823149 agcctccggagtagctgggactacaggtgcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162128 31 + 50109623 agcctccggagtagctgggactacaggtgcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184960 31 + 4464012 agcctcccgagtagctgggactacaggtgcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680728 31 - 115148730 agcctcccgagtagctgggactacagacgcc i nomLeu3.chr7b C 0 C 0 s dasNov3.JH570235 101703 9 + 1056298 ----------------------ACAGATGcc i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 50548 3 + 5963231 I e mm10.chr15 82840349 84 + 104043685 I e canFam3.chr10 46120728 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5105578 128 - 6317780 I e micMur3.chr7 5741126 113 + 108171978 I e cebCap1.NW_016107750v1 1372448 3 - 1807191 I e saiBol1.JH378157 8886798 0 - 16357246 C e calJac3.chrUn_GL286373 1975948 1 - 2117846 I e colAng1.NW_012115588v1 947988 0 + 1946073 C e manLeu1.NW_012102031v1 14010061 0 - 14338769 C e chlSab2.chr19 24729359 0 + 33263144 C e cerAty1.NW_011999588v1 4098711 0 - 4483953 C e macNem1.NW_012012688v1 7131911 0 - 13098629 C e macFas5.chr10 87640110 0 - 96509753 C e rheMac8.chr10 84295461 0 + 92844088 C a score=135504.000000 s hg38.chr22_GL383582v2_alt 107662 153 + 162811 cgccaccacgcccggctaa-ttttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccgcccgtctcggcctgccaaagtgctgggattacaggcgtgagccaccgtgcccggcTGG s panTro5.chr22 28887564 153 + 37823149 cgccaccacgcccggctaa-ttttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtctcaatctcctgaccttgtgatccgcccgtctcggcctgccaaagtgctgggattacaggcatgagccaccgtgcccggcTGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162159 153 + 50109623 cgccaccacgcccggctaa-ttttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccgcccgtctcggcctgccaaagtgctgggattacaggcgtgagccaccgtgcccggcTGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3184991 152 + 4464012 cgccaccatgcccggctaa-ttttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccgcccgtctcggcctgccaaagtgct-ggattacaggcgtgagccaccgtgcccggcTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680759 154 - 115148730 tgccaccaagcccggctaatttttttgtatttttagtagagacagggtttcactgtgttagccaggatgttctcgatctcctgacctcacgatctgcctgtctcagcctgccaaagtgctgggattacaggcgtgagccaccgtacccggcTGG i nomLeu3.chr7b C 0 C 0 e aotNan1.NW_018512383v1 50548 3 + 5963231 I e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 101712 0 + 1056298 C e canFam3.chr10 46120728 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5105578 128 - 6317780 I e micMur3.chr7 5741126 113 + 108171978 I e cebCap1.NW_016107750v1 1372448 3 - 1807191 I e saiBol1.JH378157 8886798 0 - 16357246 C e calJac3.chrUn_GL286373 1975948 1 - 2117846 I e colAng1.NW_012115588v1 947988 0 + 1946073 C e manLeu1.NW_012102031v1 14010061 0 - 14338769 C e chlSab2.chr19 24729359 0 + 33263144 C e cerAty1.NW_011999588v1 4098711 0 - 4483953 C e macNem1.NW_012012688v1 7131911 0 - 13098629 C e macFas5.chr10 87640110 0 - 96509753 C e rheMac8.chr10 84295461 0 + 92844088 C a score=94587.000000 s hg38.chr22_GL383582v2_alt 107815 10 + 162811 GATGAGAAAC s panTro5.chr22 28887717 10 + 37823149 GATGAGAAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162312 10 + 50109623 GATGAGAAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185143 10 + 4464012 GATGAGAAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680913 10 - 115148730 GATGAGAAAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295461 10 + 92844088 GATGAGAAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640110 10 - 96509753 GATGAGAAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131911 10 - 13098629 GATGAGAAAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098711 10 - 4483953 GATGAGAAAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729359 10 + 33263144 GATGAGAAAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14010061 10 - 14338769 GATGAGAAAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947988 10 + 1946073 GATGAGAAAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1975949 10 - 2117846 GATAAGAAAC i calJac3.chrUn_GL286373 I 1 C 0 s cebCap1.NW_016107750v1 1372451 10 - 1807191 GATAAGAAAC i cebCap1.NW_016107750v1 I 3 C 0 s aotNan1.NW_018512383v1 50551 10 + 5963231 GATAAGAAAC i aotNan1.NW_018512383v1 I 3 C 0 e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 101712 0 + 1056298 C e canFam3.chr10 46120728 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5105578 128 - 6317780 I e micMur3.chr7 5741126 113 + 108171978 I e saiBol1.JH378157 8886798 0 - 16357246 C a score=162187.000000 s hg38.chr22_GL383582v2_alt 107825 23 + 162811 TTTTTAAGAGCTCTACTAATGCC s panTro5.chr22 28887727 23 + 37823149 TTTTTAAGAGCTCTACTAATGCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162322 23 + 50109623 TTTTTAAGAGCTCTACTAATGCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185153 23 + 4464012 TTTTTAAGAGCTCTACTAATGCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680923 23 - 115148730 TTTTTAAGAGCTCTACTAATGCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295471 16 + 92844088 TTTTTAAGAGCTCTA-------C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640120 16 - 96509753 TTTTTAAGAGCTCTA-------C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131921 16 - 13098629 TTTTTAAGAGCTCTA-------C i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098721 16 - 4483953 TTTTTAAGAGCTCTA-------C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729369 16 + 33263144 TTTTTAAGAGCTCTA-------C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14010071 16 - 14338769 TTCTTAAGAGCTCTA-------C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 947998 16 + 1946073 TTTTTAAGAGCTCTA-------C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1975959 23 - 2117846 TTTTTAAGAGCTCTACTAATGCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8886798 23 - 16357246 TTTTTAAGAGCTCTACTAATGCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1372461 23 - 1807191 TTTTTAAGAGCTCTACTAATGCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 50561 23 + 5963231 TTCTTAAGAGCTCTACTAATGCC i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 101712 0 + 1056298 C e canFam3.chr10 46120728 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5105578 128 - 6317780 I e micMur3.chr7 5741126 113 + 108171978 I a score=8077.000000 s hg38.chr22_GL383582v2_alt 107848 2 + 162811 TA s panTro5.chr22 28887750 2 + 37823149 TA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162345 2 + 50109623 TA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185176 2 + 4464012 TA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680946 2 - 115148730 TA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295487 2 + 92844088 GA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640136 2 - 96509753 GA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131937 2 - 13098629 GA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098737 2 - 4483953 GA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729385 2 + 33263144 GA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14010087 2 - 14338769 GA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 948014 2 + 1946073 TA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1975982 2 - 2117846 TA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8886821 2 - 16357246 TA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1372484 2 - 1807191 TA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 50584 2 + 5963231 TA i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 101712 2 + 1056298 tc i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e canFam3.chr10 46120728 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5105578 128 - 6317780 I e micMur3.chr7 5741126 113 + 108171978 I a score=987835.000000 s hg38.chr22_GL383582v2_alt 107850 84 + 162811 ATTTA-GGGGCACCCCTGAAGAAAGGAGTTCCATACATCTCAATTTTCCAGAGAAGTGATT----CA---GGCTATGAGAAATAGGTACAGA s panTro5.chr22 28887752 84 + 37823149 ATTTA-GGGGCACCCCTGAAGAAAGGAGTTCCATACATCTCAATTTTCCAGAGAAGTGATT----CA---GGCTATGAGAAATAGGTACAGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162347 84 + 50109623 ATTTA-GGGGCACCCCTGAAGAAAGGAGTTCCATACATCTCAATTTTCCAGAGAAGTGATT----CA---GGCTATGAGAAATAGGTACAGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185178 84 + 4464012 ATTTA-GGGGCACCCCTGAAGAAAGGAGTTCCATACATCTCAATTTTCCAGAGAAGTGATT----CA---GGCTATGAGAAATAGGTACAGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106680948 84 - 115148730 ATTTA-GGGGCACCCCTGAAGAAAGGAGTTTCATACATCTGAATTTTCCAGAGAAGTGATT----CA---GGCTATGAGAAATAGGTACAGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295489 84 + 92844088 ATTTA-GGGGCACCCCTGAAGAAAAGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATT----CA---GGCTATGGGAAATAGGTACAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640138 84 - 96509753 ATTTA-GGGGCACCCCTGAAGAAAAGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATT----CA---GGCTATGAGAAATAGGTACAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7131939 84 - 13098629 ATTTA-GGGGCACCCCTGAAGAAAAGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATT----CA---GGCTATGGGAAATAGGTACAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4098739 84 - 4483953 ATTTA-GGGGCACCCCTGAAGAAAAGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATT----CA---GGCTATGGGAAATAGGTACAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729387 84 + 33263144 ATTTA-GGGGCACCCCTGAAGAAAAGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATT----CA---GGCTATGGGAAATAGGTACAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14010089 84 - 14338769 ATTTA-GGGGCACCCCTGAAGAAAAGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATT----CA---GGCTATGGGAAATAGATACAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 948016 84 + 1946073 ATTTA-GGGGCACCCCTGAAGAAAGGAATTCCATACATTTGAATTTTCCAGAGAAGTGATT----CA---GGCTATGAGAAATAGGTACAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1975984 84 - 2117846 ATTTA-GGGGCACCCCTAAAGAAAGGAGTTCCATACATCTGAATTTTCCAGAAAAGTGATT----CT---GGCTAGGAAAAATATGTACATA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8886823 84 - 16357246 ATTTA-GGGGCACCCCTAAAGAACGGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATT----CT---GGCTAGGAAAAATACGTACAGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1372486 84 - 1807191 ATTTG-GGGGCACCCCTAAAGAAAGGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATT----CT---GGCTAGAAAAAATAGGTACAGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 50586 84 + 5963231 ATTTA-GGGGTACCCCTAAAGAAAGGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATT----CT---GGCTAGGAAAAATATGTACAGA i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46120728 87 - 69331447 ATTTA-GGTGTACTCCTAAAGAAAGGGTTTCCTTACATCCACATTTTCCAGATAACAGAGT----TATTGGATTAGGGAAATTATGCACAGA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101714 89 + 1056298 atttatgagacactcctgaggaaaggagttctatatatctgaattttccagataactgaggttaatA---GAGTAGGAAAAATATGCAGAGA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5105578 128 - 6317780 I e micMur3.chr7 5741126 113 + 108171978 I a score=89354.000000 s hg38.chr22_GL383582v2_alt 107934 7 + 162811 AAAACAA--- s panTro5.chr22 28887836 7 + 37823149 AAAACAA--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162431 7 + 50109623 AAAACAA--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185262 7 + 4464012 AAAACAA--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681032 7 - 115148730 AAAACAA--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295573 7 + 92844088 AAAACAA--- i rheMac8.chr10 C 0 I 324 s macFas5.chr10 87640222 7 - 96509753 AAAACAA--- i macFas5.chr10 C 0 I 3 s macNem1.NW_012012688v1 7132023 7 - 13098629 AAAACAA--- i macNem1.NW_012012688v1 C 0 I 314 s cerAty1.NW_011999588v1 4098823 7 - 4483953 AAAACAA--- i cerAty1.NW_011999588v1 C 0 I 370 s chlSab2.chr19 24729471 7 + 33263144 AAAACAA--- i chlSab2.chr19 C 0 I 318 s manLeu1.NW_012102031v1 14010173 7 - 14338769 AAAACAA--- i manLeu1.NW_012102031v1 C 0 I 344 s colAng1.NW_012115588v1 948100 7 + 1946073 AAAACAA--- i colAng1.NW_012115588v1 C 0 I 325 s calJac3.chrUn_GL286373 1976068 7 - 2117846 ACAACAA--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8886907 7 - 16357246 AAAACAA--- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1372570 7 - 1807191 AAAACAA--- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 50670 7 + 5963231 AAAACAA--- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5741239 7 + 108171978 AAAACAA--- i micMur3.chr7 I 113 C 0 s canFam3.chr10 46120815 7 - 69331447 AAAATGA--- i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 101803 10 + 1056298 AAAATGACAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5105578 128 - 6317780 I a score=40956.000000 s hg38.chr22_GL383582v2_alt 107941 6 + 162811 ATTGAG s panTro5.chr22 28887843 6 + 37823149 ATTGAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162438 6 + 50109623 ATTGAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185269 6 + 4464012 ATTGAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681039 6 - 115148730 ATTGAG i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87640232 6 - 96509753 ATTGAG i macFas5.chr10 I 3 I 308 s calJac3.chrUn_GL286373 1976075 6 - 2117846 ATTGAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8886914 6 - 16357246 ATTGAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1372577 6 - 1807191 ATTGAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 50677 6 + 5963231 ATTGAG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5741246 6 + 108171978 ATTGAG i micMur3.chr7 C 0 C 0 s canFam3.chr10 46120825 6 - 69331447 ATTGAG i canFam3.chr10 I 3 I 4 s dasNov3.JH570235 101813 6 + 1056298 ACTGAG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5105578 128 - 6317780 I e colAng1.NW_012115588v1 948107 325 + 1946073 I e manLeu1.NW_012102031v1 14010180 344 - 14338769 I e chlSab2.chr19 24729478 318 + 33263144 I e cerAty1.NW_011999588v1 4098830 370 - 4483953 I e macNem1.NW_012012688v1 7132030 314 - 13098629 I e rheMac8.chr10 84295580 324 + 92844088 I a score=280.000000 s hg38.chr22_GL383582v2_alt 107947 6 + 162811 AATAAT------- s panTro5.chr22 28887849 6 + 37823149 AATAAT------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162444 6 + 50109623 AATAAT------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185275 6 + 4464012 AATAAT------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681045 6 - 115148730 AATAAC------- i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87640546 5 - 96509753 aaaaa-------- i macFas5.chr10 I 308 C 0 s calJac3.chrUn_GL286373 1976081 3 - 2117846 ---AAT------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8886920 3 - 16357246 ---AAT------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1372583 6 - 1807191 AATAAT------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 50683 3 + 5963231 ---AAT------- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5741252 5 + 108171978 GAGAA-------- i micMur3.chr7 C 0 C 0 s canFam3.chr10 46120835 6 - 69331447 AGCATT------- i canFam3.chr10 I 4 C 0 s dasNov3.JH570235 101819 10 + 1056298 ---AATACAGAGT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5105578 128 - 6317780 I e colAng1.NW_012115588v1 948107 325 + 1946073 I e manLeu1.NW_012102031v1 14010180 344 - 14338769 I e chlSab2.chr19 24729478 318 + 33263144 I e cerAty1.NW_011999588v1 4098830 370 - 4483953 I e macNem1.NW_012012688v1 7132030 314 - 13098629 I e rheMac8.chr10 84295580 324 + 92844088 I a score=20864.000000 s hg38.chr22_GL383582v2_alt 107953 2 + 162811 AA s panTro5.chr22 28887855 2 + 37823149 AA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162450 2 + 50109623 AA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185281 2 + 4464012 AA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681051 2 - 115148730 AG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295904 2 + 92844088 aa i rheMac8.chr10 I 324 C 0 s macFas5.chr10 87640551 2 - 96509753 aa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7132344 2 - 13098629 aa i macNem1.NW_012012688v1 I 314 C 0 s chlSab2.chr19 24729796 2 + 33263144 aa i chlSab2.chr19 I 318 C 0 s colAng1.NW_012115588v1 948432 2 + 1946073 aa i colAng1.NW_012115588v1 I 325 C 0 s calJac3.chrUn_GL286373 1976084 2 - 2117846 AA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8886923 2 - 16357246 AA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1372589 2 - 1807191 AA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 50686 2 + 5963231 AA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5741257 2 + 108171978 AA i micMur3.chr7 C 0 C 0 s canFam3.chr10 46120841 1 - 69331447 -A i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 101829 2 + 1056298 AA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5105578 128 - 6317780 I e manLeu1.NW_012102031v1 14010180 344 - 14338769 I e cerAty1.NW_011999588v1 4098830 370 - 4483953 I a score=179999.000000 s hg38.chr22_GL383582v2_alt 107955 18 + 162811 AATTCCAAATTAACAATT s panTro5.chr22 28887857 18 + 37823149 AATTCCAAATTAACAATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162452 18 + 50109623 AATTCCAAATTAACAATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185283 18 + 4464012 AATTCCAAATTAACAATT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681053 18 - 115148730 AATTCCAAATTAACAATT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295906 18 + 92844088 aaaTCCAAAGTAACAATT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640553 18 - 96509753 aaaaCCAAAGTAACAATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7132346 18 - 13098629 aaaTCCAAAGTAACAATT i macNem1.NW_012012688v1 C 0 C 0 s chlSab2.chr19 24729798 18 + 33263144 aaaTCCAAAGTAACAATT i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 948434 18 + 1946073 aaaTCCAAAGTAACAATT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1976086 18 - 2117846 AATGCCAAATTAATAACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8886925 18 - 16357246 GATGCCAAAATAACAACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1372591 18 - 1807191 AATGCCAAATTAATAATT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 50688 18 + 5963231 AATGCCAAATTAATAACT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5741259 18 + 108171978 AATTCCAAATTAGTAATT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5105706 18 - 6317780 AATTCCAAATTAGTAATT i proCoq1.NW_012136747v1 I 128 C 0 s canFam3.chr10 46120843 18 - 69331447 AATTCCAAATTAATGATC i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 101831 18 + 1056298 AATTCCAAATTGATGATC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e manLeu1.NW_012102031v1 14010180 344 - 14338769 I e cerAty1.NW_011999588v1 4098830 370 - 4483953 I a score=477076.000000 s hg38.chr22_GL383582v2_alt 107973 34 + 162811 AATGGACATTAAACA-CAAAATTAACAGGGAACAA s panTro5.chr22 28887875 34 + 37823149 AATGGACATTAAACA-CAAAATTAACAGGGAACAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162470 34 + 50109623 AATGGACATTAAACA-CAAAATTAACAGGGAACAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185301 34 + 4464012 AATGGACATTAAACA-CAAAATTAACAGGGAACAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681071 34 - 115148730 AATGGACATTAAACA-CAAAATTAACAGGGAACAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295924 34 + 92844088 AATAGACATTAAACA-CAAAATTAACATGGAACAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640571 34 - 96509753 AATAGACATTAAACA-CAAAATTAACATGGAACAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7132364 34 - 13098629 AATAGACATTAAACA-CAAAATTAACATGGAACAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4099200 31 - 4483953 aatagacattaaaca-caaaattaacatga---aa i cerAty1.NW_011999588v1 I 370 C 0 s chlSab2.chr19 24729816 34 + 33263144 AATGGACATTAAACA-CAAAATTAACATGGAACAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14010524 34 - 14338769 AATAGACATTAAACA-CAAAATTAACATGGAACAA i manLeu1.NW_012102031v1 I 344 C 0 s colAng1.NW_012115588v1 948452 34 + 1946073 AATGGACATTAAACA-CAAAATTAACATGGAACAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1976104 31 - 2117846 AATGGACATTAAACA-CAAAATTAACAGGG---AA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8886943 34 - 16357246 AATGGACATTAAACA-CAAAATTAACAGGAAACAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1372609 34 - 1807191 AATGGACATTAAACA-CAAAATTAACAGGGAACAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 50706 34 + 5963231 AATGGACATTAAACA-CAAAATTAACAGGGAACAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5741277 34 + 108171978 AATGGACATTAAACA-CAAAATTAACAGGGAACAA i micMur3.chr7 C 0 I 886 s proCoq1.NW_012136747v1 5105724 32 - 6317780 AATGGACACTAAACA-CAAAATTAACAGGGAAC-- i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46120861 35 - 69331447 AATAGGCATAAAGCATTAAAATTAACAGGGAACAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 101849 34 + 1056298 AACAGACATAAAACA-TGAAATTAATGGAGAAATG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=489961.000000 s hg38.chr22_GL383582v2_alt 108007 54 + 162811 ---CATTAATATCACTAATAAAATAAATGAA----AAGGAACTAAAAG-----TTTAAAAAGAAGG s panTro5.chr22 28887909 54 + 37823149 ---CATTAATATCACTAATAAAATAAATGAA----AAGGAACTAAAAG-----TTTAAAAAGAAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162504 54 + 50109623 ---CATTAATATCACTAATAAAATAAATGAA----AAGGAACTAAAAG-----TTTAAAAAGAAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185335 54 + 4464012 ---CATTAACATCACTAATAAAAGAAATGAA----AAGGAACTAAAAG-----TTTAAAAAGAAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681105 54 - 115148730 ---CATTAATATCACTAATAAAAGAAATGAA----AAGGAACTAAAGG-----TTTAAAAAGAAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84295958 49 + 92844088 ---CATTAATATCACTAAT-----AAATGAA----AAGGAACTaaaag-----tttaaaaagaagg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640605 49 - 96509753 ---CATTAATATCACTAAT-----AAATGAA----AAGGAACTAAAAG-----TTTAAAAAGAAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7132398 49 - 13098629 ---CATTAATATCACTAAT-----AAATGAA----AAGAAACTaaaag-----tttaaaaagaagg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4099231 49 - 4483953 ---cattaaTATCACTAAT-----AAATGAA----AAAGAACTaaaag-----tttaaaaagaagg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729850 49 + 33263144 ---CATTAATATCACTAAT-----AAACGAA----AAGGAACTAAAAG-----TTTAAAAAGAAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14010558 49 - 14338769 ---CATTAATATCACTAAT-----AAATGAA----AAGGAACTAAAAG-----TTTAAAAAGAAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 948486 49 + 1946073 ---CATTAATATCACTAAT-----AAACGAA----AAGGAACTAAAAG-----TTTAAAAAGAAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1976135 44 - 2117846 ---CATTAATATTGCTAAT----------AA----AATGAACTAAAAG-----TTTAAAAAGAAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8886977 44 - 16357246 ---CATTAATATTGCTAAT----------AA----AATGAACTAAAAG-----TTTAAAAAGAAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1372643 44 - 1807191 ---CATTAATATCGCTAAT----------AA----AATGAACTAAAAG-----TTTTAAAAGAAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 50740 44 + 5963231 ---CATTAATATCGCTAAT----------AA----AATGAACTAAAAG-----TTTAAAAAGAAGG i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5105756 50 - 6317780 -------AATATCACAAAT-----AAAAGAA----ataaaattaaaagagacatttaaaaagaaga i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46120896 55 - 69331447 ------TGATATCACTGATGCAAGAAGTAAAATTTAAAGGattaaaaa-----tttagaaattggg i canFam3.chr10 C 0 I 189 s dasNov3.JH570235 101883 52 + 1056298 TACCATTAACAGAAGAAAT---GTAATTCAA----AAAGAAAGTAAAA-----TTTAAAAATAC-- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5741311 886 + 108171978 I a score=2225726.000000 s hg38.chr22_GL383582v2_alt 108061 193 + 162811 TCCAA-TGCCACTGAGGTAGCAGT-AAACA--GGCTCACCTGTCCTCATGGATGCTCATGCCTTG------------------------------TTATGACCCTTTGTTGATTAAACCACAAGACAATGC-CTATCAAAAACCATAACAATGTTGGCCCTTCTTGACCTAGCAGTTCAACAGCCATAAA-TTTTTCTTTAAATCGAAA------AATAAAAATGCTTATTGCTC s panTro5.chr22 28887963 193 + 37823149 TCCAA-TGCCACTGAGGTAGCAGT-AAACA--GGCTCACCTGTCCTCATGGATGCTCACGCCTTG------------------------------TTATGACCCTTTGTTGGTTAAACCACAAGACAATGC-CTATCAAAAACCATAACAATGTTGGCCCTTCTTGACCTAGCAGTTCAACAGCCATAAA-TTTTTCTTTAAATCGAAA------AATAAAAATGCTTATTGCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162558 193 + 50109623 TCCAA-TGCCACTGAGGTAGCAGT-AAACA--GGCTCACCTGTCCTCATGGATGCTCACGCCTTG------------------------------TTATGACCCTTTGTTGGTTAAACCACAAGACAATGC-CTATCAAAAACCATAACAATGTTGGCCCTTCTTGACCTAGCAGTTCAACAGCCATAAA-TTTTTCTTTAAATCGAAA------AATAAAAATGCTTATTGCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185389 193 + 4464012 TCCAA-TGCCACTGAGGTAGCAGT-AAACG--GGCTCACCTGTCCTCATGGATGCTCATGCCTTG------------------------------TTATGACCCTTTGTTGGTTAAACCACAAGACAATGC-CTATCAAAAACCATAACAATGTTGGCCCTTCTTGACCTAGCAGTTCAACAGCCATAAA-CTTTTCTTTAAATCGAAA------AATAAAAATGCTTATTGCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681159 195 - 115148730 TCCAA-TGCCACTGAGGTAGCAGT-AAACATGGGCTCACCTGTCCTCATGGATGCTCATACCTTG------------------------------TTATGACCCTTTGCTGGTTAAATCACAAGACAATGT-CTATCAAAAACCATAACAATGTTGGCCCTTCTTGACCTAGCAGTTCAATAGCCATAAG-TTTTTCTTTAAATCAAAA------AATAAAAATGCTTATTGCTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84296007 196 + 92844088 tccaa-tgtcactgaggtggcagt-aaacaagggctcacctgtcctcatggatgctcatgccttg------------------------------gtatgaccctttgttggttaaaccacaagacaatgc-ctatcaaaaaccgtaacaatgttggccctttttgacctagcagttcaatagctataaattttttctataaatcgaaa------aataaaaatgctTATTGCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640654 196 - 96509753 TCCAA-TGTCACTGAGGTGGCAGT-AAACAAGGGCTCACCTGTCCTCATGGATGCTCATGCCTTG------------------------------GTATGACCCTTTGTTGGTTAAACCACAAGACAATGC-CTATCAAAAACCGTAACAATGTTGGCCCTTTTTGACCTAGCAGTTCAATAGCTATAAATTTTTTCTATAAATCGAAA------AATAAAAATGCTTATTGCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7132447 196 - 13098629 tccaa-tgtcactgaggtggcagt-aaacaagggctcacttgtcctcatggatgctcatgccttg------------------------------gtatgaccctttgttggttaaaccacaagacaatgc-ctatcaaaaaccgtaacaatgttggccctttttgacctagcagttcaatagctataaattttttctataaatcgaaa------aataaaaatgctTATTGCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4099280 196 - 4483953 tccaa-tgtcactgaggtggcagt-aaacaagggctcacctgtcctcatggatgctcatgccttg------------------------------gtatgaccctttgttggttaaaccacaagacaatgc-ctatcaaaaaccgtaacaatgttggccctttttgacctagcagttcaatagctataaattttttctataaatcaaaa------aataaaaatgctTATTGCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24729899 196 + 33263144 TCCAA-TGTCACTGAGGTGGCAGT-AAACAGGGGCTCACCTGTCCTCATGGATGCTCATGCCTCG------------------------------GTATGACCCTTTGTTGGTTAAACCACAAGACAATGC-CTATCAAAAACCGTAACAATGTTGGCCCTTTTTGACCTAGCAGTTCAATAGCTATAAATTTTTTCTATAAATGAAAA------CATAAAAATGCTTATTGCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14010607 196 - 14338769 TCCAA-TGTCACTGAGGTGGCAGT-AAACAAGGGCTCACCTGTCCTCATGGATGCTCATGCCTTC------------------------------ATATGACCCTTTGTTGGTTAAACCACAAGACAATGC-CTATCAAAAACCGTAACAATGTTGGCCCTTTTTGACCTAGCAGTTCAATAGCTATAAATTTTTTCTATAAATCGAAA------AGTAAAAATGCTTATTGCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 948535 225 + 1946073 TCCAA-TGTCACTGAGGTGGCAGT-AAACAAGGGCTCACCTGTCCTCATGGATGCTCATGCCTTGGTATGACCCTTTGTTGGATGCTCATGCCTTGTATGACCCTTTGTTGGTTAAACCACAAGACAATGC-CTATCAAAAACCGTAACAATGTTGGTCCTTTTTGACCTAGCAGTTCAATAGCTATAAA-TTTTTCTATAAATCGAAA------AATAAAAATGCTTATTGCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1976179 193 - 2117846 TCCAG-CGCCACTGAGGTAGTAGT-AAATGCAGGCTCACCTGTCCTCATGGATGCTCATGCCTTT------------------------------GTATGGCCCTTTGCTGGTTAAACCATAAGACAATGC-CTATCAAAAACCATAACAAAGTTGGCCCCTTTTGACCTAGCAGTTCAATAGCTA------TTTTCTTTAAATAGAAA---AATAATAAAGATGTTTATTGTTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8887021 197 - 16357246 TCCAC-CGCCATTGAGGTGGTAGT-AAATGTGGGCTCACCTGTCCTCATGGATGCTCATGCCTTG------------------------------GTACGGCCCTTTGCCAGTTAAACCACAAGACAATGC-CTATCAAAAACTCTAACAATGTTGGCCCTTTCTGACCTAGCAGTTCAATAGCTATACG-TTTTTCTTTAAATAGAAA---AATAATAAAGATGTTTATTG-TC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1372687 197 - 1807191 TCCAA-CGCCATTGAGGTAGTAGT-AAATGTGGGCTCATCT-TTCTCATGGATGCTCATGCCTTG------------------------------GTATGGCCCTCTGCTGGTTAAACCACAAGACAATGC-CTATCAAAAACCGTAACAATGTTGTCCCTTTTTGACCTAGCAATTCAATAGCTATATG-TTTTTCTTTAAATAGAAA---AATAATAAAGATGTTTATCGTTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 50784 198 + 5963231 TCTAA-GGCCACTGAGGTGGCAGT-AAATGTGGGCTCACCTGTTCTTATGGATGCTCATGCCTTG------------------------------GTATGGCCCTTTGCTGGTTAAACCACAAGACAATGC-CTATCGAAAGCCATAACAATGTTGGCCCTTTTTGACCTAGCAGTTCAATAGCTATACG-TTTTTCTTTAAATAGAAA---AATAATAAAGATGTTTATTGTTC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5105806 203 - 6317780 tccaa-tgccatcaaggttacagtaaaacgtcggcgtacatgtccttatggatgagcacaccttg------------------------------gtatgacccttttttggttaaaccacaagacaatgctttatcaaaaaccataataatgtttgcactttttgacctagcagttcaacagctggaaa-attttgtctaaataaaggtccaagaatagacatgtttagtgctg i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46121140 193 - 69331447 TCCAAGTGTTGCTGAGGTTATAGT-------GGGCTCCCATGTATCTGTGAATGATCATAGCTCA------------------------------GTATGATCCTTT-TTGGTTAAACCACAAGATAATGC-TTATCAAAACCCATAA-AATATTCATGTTTTTTGACTT-GCAGTTTAACATCTGGAGA-TTTTCCCTCAACTAAAACTCCATGAATAGGAACGTTGACTGCTG i canFam3.chr10 I 189 C 0 s dasNov3.JH570235 101935 188 + 1056298 CCCTA-TGCCAtatagtt-------aaacatggactcacatgtacttgtgggtg-----accttg------------------------------gtatgacccttt-ctgcttaaaccacaagataatgc-ctatcaagaaccataacaatgtttgcacttttggatctagaagttcaacatccagaaa--tatgccccaaataaagcttcatgaataaaaacacttatggttg i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5741311 886 + 108171978 I a score=130255.000000 s hg38.chr22_GL383582v2_alt 108254 9 + 162811 CATAGAAAG s panTro5.chr22 28888156 9 + 37823149 CATAGAAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162751 9 + 50109623 CATAGAAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185582 9 + 4464012 CATAGAAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681354 9 - 115148730 CATAGAAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84296203 9 + 92844088 CATACAAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640850 9 - 96509753 CATACAAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7132643 9 - 13098629 CATACAAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4099476 9 - 4483953 CATACAAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24730095 9 + 33263144 CATACAAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14010803 9 - 14338769 CATACAAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 948760 9 + 1946073 CATAGAAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1976372 9 - 2117846 CATAGAAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8887218 9 - 16357246 CATAGAAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1372884 9 - 1807191 CATAGAAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 50982 9 + 5963231 CATAGAAAG i aotNan1.NW_018512383v1 C 0 I 300 s micMur3.chr7 5742197 9 + 108171978 CATAAAAAG i micMur3.chr7 I 886 C 0 s proCoq1.NW_012136747v1 5106009 9 - 6317780 cataaaaag i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46121333 9 - 69331447 CATTAAAAA i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 102123 9 + 1056298 cataaaaag i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=8295.000000 s hg38.chr22_GL383582v2_alt 108263 1 + 162811 T s panTro5.chr22 28888165 1 + 37823149 T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162760 1 + 50109623 T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185591 1 + 4464012 T i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681363 1 - 115148730 T i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84296212 1 + 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640859 1 - 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7132652 1 - 13098629 T i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4099485 1 - 4483953 T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24730104 1 + 33263144 T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14010812 1 - 14338769 T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 948769 1 + 1946073 T i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1976381 1 - 2117846 C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8887227 1 - 16357246 C i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1372893 1 - 1807191 c i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5742206 1 + 108171978 T i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5106018 1 - 6317780 t i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46121343 1 - 69331447 C i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 102132 1 + 1056298 t i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 50991 300 + 5963231 I e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=116570.000000 s hg38.chr22_GL383582v2_alt 108264 9 + 162811 --AGTAAATTA s panTro5.chr22 28888166 9 + 37823149 --AGTAAATTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162761 9 + 50109623 --AGTAAATTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185592 9 + 4464012 --AGTAAATTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681364 9 - 115148730 --ATTAAATTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84296213 9 + 92844088 --AGTAAATTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640860 9 - 96509753 --AGTAAATTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7132653 9 - 13098629 --AGTAAATTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4099486 9 - 4483953 --AGTAAATTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24730105 9 + 33263144 --AGTAAATTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14010813 9 - 14338769 --AGTAAATTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 948770 9 + 1946073 --AGTAAATTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1976382 9 - 2117846 --AATAAATTA i calJac3.chrUn_GL286373 C 0 I 301 s saiBol1.JH378157 8887228 9 - 16357246 --AATAAATTA i saiBol1.JH378157 C 0 I 317 s cebCap1.NW_016107750v1 1372894 9 - 1807191 --aataaatta i cebCap1.NW_016107750v1 C 0 I 314 s aotNan1.NW_018512383v1 51291 9 + 5963231 --AGTAAATTC i aotNan1.NW_018512383v1 I 300 C 0 s micMur3.chr7 5742207 9 + 108171978 --AGTAAATTA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5106019 9 - 6317780 --agtaaatta i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46121344 9 - 69331447 --AGTGAATTA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 102133 10 + 1056298 tatataaata- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=82422.000000 s hg38.chr22_GL383582v2_alt 108273 5 + 162811 ACTGG s panTro5.chr22 28888175 5 + 37823149 ACTGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162770 5 + 50109623 ACTGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185601 5 + 4464012 ACTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681373 5 - 115148730 ACTGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84296222 5 + 92844088 ACTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640869 5 - 96509753 ACTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7132662 5 - 13098629 ACTGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4099495 5 - 4483953 ACTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24730114 5 + 33263144 ACTGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14010822 5 - 14338769 ACTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 948779 5 + 1946073 ACTGG i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8887554 5 - 16357246 ACTGG i saiBol1.JH378157 I 317 C 0 s cebCap1.NW_016107750v1 1373217 5 - 1807191 ACTGG i cebCap1.NW_016107750v1 I 314 C 0 s aotNan1.NW_018512383v1 51300 5 + 5963231 ACTGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5742216 5 + 108171978 ACTGG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5106028 5 - 6317780 actgg i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46121353 5 - 69331447 ACTGG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 102143 5 + 1056298 actgg i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e calJac3.chrUn_GL286373 1976391 301 - 2117846 I a score=585602.000000 s hg38.chr22_GL383582v2_alt 108278 61 + 162811 AAACCACCTCAA-----TAAAAGTGC-------G--GTACTTGAATAAATTACATTATACTCACGCTAAACTAAG s panTro5.chr22 28888180 61 + 37823149 AAACCACCTCAA-----TAAAAGTGC-------G--GTACTTGAATAAATTACATTATACTCATGCTAAACTAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162775 61 + 50109623 AAACCACCTCAA-----TAAAAGTGC-------G--GTACTTGAATAAATTACATTATACTCATGCTAAACTAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185606 61 + 4464012 AAACCACCTCAA-----TAAAAGTGC-------G--GTACTTGAATAAATTACATTATACTCACACTAAACTAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681378 61 - 115148730 AAACCACCCCAA-----CAAAAGTGC-------A--GTACTTGGATAAATCACATTATACTCACACTAAACTAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84296227 61 + 92844088 AAACCACCTCCA-----TAAGAGTGC-------G--ATACTTGGATAAATCACATCATACTAACATTAAATTAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640874 61 - 96509753 AAACCACCTCCA-----TAAGAGTGC-------G--ATACTTGGATAAATCACATCATACTAACATTAAATTGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7132667 61 - 13098629 AAACCACCTCCA-----TAAGAGTGC-------G--ATACTTGGATAAATCACATCATACTAACATTAAATTAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4099500 61 - 4483953 AAACCACCTCTG-----TAAGAGTGC-------G--ACACTTGGATAAATCACATCATACTAACATTAAATTAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24730119 66 + 33263144 AAACCACCTCCAGTGCGTAAGAGTGC-------G--ATACTTGGATAAATCACATCATACTAACACTAAATTAAG i chlSab2.chr19 C 0 I 7 s manLeu1.NW_012102031v1 14010827 61 - 14338769 AAACCACCTCCA-----TAAGAGTGC-------G--ACACTTGGATAAATCACATCATACtaacattaaattagg i manLeu1.NW_012102031v1 C 0 I 2 s colAng1.NW_012115588v1 948784 61 + 1946073 AAACCAACTCAA-----TAAAAGTGC-------G--ATACTTGGATAAATCACATCATAGTAACACTaaattaag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1976692 49 - 2117846 AATTCACCTCGA-----TAAAAGTGC---------------------AATTACATTATACTGACACTAAGACaaa i calJac3.chrUn_GL286373 I 301 C 0 s saiBol1.JH378157 8887559 61 - 16357246 AAACCATCTTGA-----TAAAAGTGC-------A--ATACATGGATAAATTAAATTATATTGACACTAAGACAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373222 61 - 1807191 AAACCACCTCGA-----TAAAAGTGC-------A--ATACATGGATAAATTACATTATACTGACACTAAGACAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51305 61 + 5963231 AAACCACCTCGA-----TAAAAGTGC-------A--ATACATGGATAAATTACATTATACTGACACTAAGACAAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5742221 65 + 108171978 AAACAACCTCAAAATC-CAAAAGTGT-------G--ACACTTGGATAAATTGCATTATACCCATATTAAATTAAA i micMur3.chr7 C 0 I 21 s proCoq1.NW_012136747v1 5106033 63 - 6317780 aaatgacctcaaaatc-caaagg-gt-------g--acacttggataaattgcattacacccaTATTAAATTAA- i proCoq1.NW_012136747v1 C 0 I 4 s canFam3.chr10 46121358 60 - 69331447 ---AAGCCTCAATGTC-TAATAGTGCAGGCAGGA--GTACTTGCCTAAATTCCGTTAC----ATATTAAA----- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 102148 65 + 1056298 aaacaacctccatgtc-caacagtgc-------agtatacctgggcaaattacagtacatccataTTAAATTA-- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=-34343.000000 s hg38.chr22_GL383582v2_alt 108339 10 + 162811 -----AAAAA----------------------AGa--aa s panTro5.chr22 28888241 10 + 37823149 -----AAAAA----------------------AGa--aa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162836 10 + 50109623 -----AAAAA----------------------AGa--aa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185667 10 + 4464012 -----AAAAA----------------------AGA--AA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681439 9 - 115148730 -----ACAAA----------------------a-a--aa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84296288 8 + 92844088 -----ACAAA----------------------AAA---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640935 8 - 96509753 -----ACAAA----------------------AAA---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7132728 8 - 13098629 -----ACAAA----------------------AAA---- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4099561 8 - 4483953 -----ACAAA----------------------AAA---- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24730192 8 + 33263144 -----AAAAA----------------------AAA---- i chlSab2.chr19 I 7 C 0 s manLeu1.NW_012102031v1 14010890 8 - 14338769 -----aaaaa----------------------aaa---- i manLeu1.NW_012102031v1 I 2 C 0 s colAng1.NW_012115588v1 948845 10 + 1946073 -----acaaa----------------------aaaaa-- i colAng1.NW_012115588v1 C 0 I 313 s calJac3.chrUn_GL286373 1976741 28 - 2117846 -----aaaaaaaaaaaaaaaaaaaaaaaaaaaa------ i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8887620 5 - 16357246 -----AAAAA----------------------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373283 11 - 1807191 -----AAAAA-----------------AAAAAA------ i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51366 6 + 5963231 -----AAAAA----------------------A------ i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5106100 6 - 6317780 -----AAAAA----------------------A------ i proCoq1.NW_012136747v1 I 4 C 0 s canFam3.chr10 46121418 8 - 69331447 -----ACAAT----------------------ATA---- i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 102213 10 + 1056298 AAATGAAAAA----------------------------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5742286 21 + 108171978 I a score=11658.000000 s hg38.chr22_GL383582v2_alt 108349 4 + 162811 tcac s panTro5.chr22 28888251 4 + 37823149 tcac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162846 4 + 50109623 tcac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185677 4 + 4464012 TCAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681448 4 - 115148730 tcac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84296296 2 + 92844088 --AC i rheMac8.chr10 C 0 I 2 s macFas5.chr10 87640943 2 - 96509753 --AC i macFas5.chr10 C 0 I 2 s macNem1.NW_012012688v1 7132736 2 - 13098629 --AC i macNem1.NW_012012688v1 C 0 I 2 s cerAty1.NW_011999588v1 4099569 2 - 4483953 --AC i cerAty1.NW_011999588v1 C 0 I 2 s chlSab2.chr19 24730200 2 + 33263144 --AA i chlSab2.chr19 C 0 I 2 s manLeu1.NW_012102031v1 14010898 2 - 14338769 --ac i manLeu1.NW_012102031v1 C 0 I 2 s calJac3.chrUn_GL286373 1976769 4 - 2117846 TCAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8887625 2 - 16357246 --TC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373294 4 - 1807191 TCAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51372 4 + 5963231 TCAC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5106106 4 - 6317780 TCAC i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46121429 2 - 69331447 TT-- i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 102223 4 + 1056298 CCAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5742286 21 + 108171978 I e colAng1.NW_012115588v1 948855 313 + 1946073 I a score=76775.000000 s hg38.chr22_GL383582v2_alt 108353 8 + 162811 agattaga s panTro5.chr22 28888255 8 + 37823149 agattaga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162850 8 + 50109623 agattaga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185681 8 + 4464012 AGATTACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681452 8 - 115148730 agattaga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84296300 8 + 92844088 AGattagt i rheMac8.chr10 I 2 C 0 s macFas5.chr10 87640947 8 - 96509753 AGattagt i macFas5.chr10 I 2 C 0 s macNem1.NW_012012688v1 7132740 8 - 13098629 AGattagt i macNem1.NW_012012688v1 I 2 C 0 s cerAty1.NW_011999588v1 4099573 8 - 4483953 AGattagt i cerAty1.NW_011999588v1 I 2 C 0 s chlSab2.chr19 24730204 8 + 33263144 AGATTAGT i chlSab2.chr19 I 2 C 0 s manLeu1.NW_012102031v1 14010902 8 - 14338769 agattagt i manLeu1.NW_012102031v1 I 2 C 0 s colAng1.NW_012115588v1 949168 8 + 1946073 agattagt i colAng1.NW_012115588v1 I 313 C 0 s calJac3.chrUn_GL286373 1976773 8 - 2117846 AGATTAGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8887627 8 - 16357246 AGATTGGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373298 8 - 1807191 AGATTAGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51376 8 + 5963231 AGATTAGT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5106110 5 - 6317780 AGAAT--- i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46121431 8 - 69331447 AAGTTACT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 102227 8 + 1056298 AGGTTAAC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5742286 21 + 108171978 I a score=2960905.000000 s hg38.chr22_GL383582v2_alt 108361 223 + 162811 atgaaaattaaaattacaaaataa----agtaaaaaAAGCAACACAGA-CTTGTATCTACACT----GTGATGATGGAGactcacaaggtttgaatcctgggcaagctcctctctggacctcaaa---tctcacctg-gag-tgtgatgagacccaccagaaagggttggtttgaggtctaaatgtgg-taattcacgtatagtgcttagaaagcattcagtacatgttagcagtcat s panTro5.chr22 28888263 223 + 37823149 atgaaaattaaaattacaaAACGA----AGTAAAAAAAGCAACACAGA-CTTGTATCTACACT----GTGATGATGGAGactcacaaggtttgaatcctgggcaagctcctctctggacctcaaa---tctcacctg-cag-tgtgatgagacccaccagaaagggttggtttgaggtctaaatgtgg-taattcacgtatagtgcttagaaagcattcagtacatgttagcagtcat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41162858 223 + 50109623 atgaaaattaaaattacaaaatga----agtaaaaaAAGCAACACAGA-CTTGTATCTACACT----GTGATGATGGAGactcacaaggtttgaatcctgggcaagctcctctctggacctcaaa---tctcacctg-gag-tgtgatgagacccaccagaaagggttggtttgcggtctaaatgtgg-taattcacgtatagtgcttagaaagcattcagtacatgttagcagtcat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185689 223 + 4464012 ATGAAAATTAAAATTACAAAATAA----AGTAAAAAAAGCAACACAGA-CTTGTATCTACACT----GTGATGATGGAGactcacaaggtttgaatcctgggcaagctcctctctggacctcaaa---tctcacctg-gag-tgtgatgagacccaccagaaagggttggtttgaggtctaaatgtga-taattcacgtatagtgcttcgaaagcattcagtacatgttagcagtcat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681460 224 - 115148730 atgaaaattaaaattacaaaataa----agtaaaaaAAGCAACACAGA-CTTGTATCTATACT----GTGATGATGGAGactcacaaggtttgaatcctgggcaaggtcctctctggacctcaaa---tctcacctg-gaa-tgtgatgagagccaccaggaagggttggtttgaggtctaaatgtgattaattcacgtatagtgcttagaaagcattcagtacatgttagcagtcat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84296308 223 + 92844088 atgaaaattaaaattacaaaataa----agttaaaaAAGCAACACAGA-CTTGTATCTACACT----GTGATGATGGAGactcacaaggtttgaatcctgggcaagttcctctctagacctcaaa---tctcacctg-gag-tgtgatgagacccatcagaaagggttggtttgaggtctacatgtga-taattcacgtatagtgcttagaaagcattcagtacatgttagcagtcat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87640955 223 - 96509753 atgaaaattaaaattacaaaataa----agttaaaaAAGCAACACAGA-CTTGTATCTACACT----GTGATGATGGAGactcacaaggtttgaatcctgggcaagttcctctctagacctcaaa---tctcacctg-gag-tgtgatgagacccatcagaaagggttggtttgaggtctaaatgtga-taattcacgtatagtgcttagaaagcattcagtacatgttagcagtcat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7132748 223 - 13098629 atgaaaattaaaattacaaaataa----agttaaaaAAGCAACACAGA-CTTGTATCTACACT----GTGATGATGGAGactcacaaggtttgaatcctgggcaagttcctctctagacctcaaa---tctcacctg-gag-tgtgatgagacccatcacaaagggttggtttgaggtctaaatgtga-taattcacgtatagtgcttagaaagcattcagtacatgttagcagtcat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4099581 223 - 4483953 atgaaaattaaaattacaaaataa----agttaaaaAAGCAACACAGA-CTTGTATCTACACT----GTGATGATGGAGactcacaaggtttgaatcctgggcaagttcctctctagacctcaaa---tctcacctg-gag-tgtgatgagacccatcagaaagggttgatttgaggtctaaatgtga-taattcacgtatagtgcttagaaagcattcagtacatgttagcagtcat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24730212 223 + 33263144 ATGAAAATTAAAATTACAAAATAA----AGTTAAAAAAGCAACACAGA-CTTATATCTACACT----GTGATGATGGAGactcacaaggtttgaatcctgggcaagttcctctctagacctcaaa---tctcacctg-gag-tgtgatgagacccatcagaaagggttggtttgaggtctaaatgtga-taattcacgtatagtgcctagaaagcattcagtacatgttagcagtcat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14010910 218 - 14338769 atgaaaattaaaattacaaagtaa----agttaaaaAAGCAACACAGA-CTTGTATCTACACT----GTGATGATGGAGactcacaaggtttgaatcctgggcaaat-----cctagacctcaaa---tctcacctg-gag-tgtgatgagacccatcagaaagggttggtttgaggtctaaatgtga-taattcacgtatagtgcttagaaagcattcagtacatgttagcagtcat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 949176 223 + 1946073 atgaaaattaaaattacaaaataa----agtaaaaaAAGCAACACAGA-CTTGTATCTACACT----GTGATGATGAAGactcacaaggtttgaatcctgggcaagttcctctctagacctcaaa---tctcacctg-gag-tgtgatgagacccatcagaaagggttggtttgaggtctaaatgtga-taattcacgtatagtgcttagaaagcattcagtacatgttagcagtcat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1976781 225 - 2117846 ATGAAAATTAAAACTACAAAATTA----AGTGAAACAAGCAACACAGA-CTTCTATCTATAGT----GTGATGATGGAGATTCACGAtgtctgaatcctgggcaggttcctctctggacctcaaatattctcacctg--ag-tgtgatgagacccaccaaaaagggttggtttgagatttaaatatga-taattcatgtatagtgcttagaaagcattcagtacatgttagcagtcat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8887635 222 - 16357246 ATGAAAATTACAACCACAAAATTA----AGTGAAAAAAGCAACACAGC-CTTCTATCTACAGT-------ACGATGGAGactcacgaggtctgaatcctgggcaggttcctcgctggacctcaaatattctcacctg--ag-tgtgatgagacccaccaaaaagggttgttttgaggtttaaatgtga-taattcatgtatagtgcctagaaagcattcagtacacgttagcagtcat i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373306 222 - 1807191 Atgaaaattaag---tgaaaatta----agtgaaaaAAGCAACACAGC-CTTCTATTTATAGT----GTGATGATGGAGACTCATGAGGTCTGAatcctgggcaggttcctctctggacctcaaatattctcacctg--ag-tgtgatgagacccatcaaaaagggctggtttgaggtttaaatgtga-taattcatgtatagtgcttagaaagcattcagtacacgtcagcagtcac i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51384 225 + 5963231 ATGAAAATTAAAACTACAAAATTA----AGTGAAAAAAGCAACACAGA-CTTCTATCTATAGT----GTGATGATGGAGactcacgaggtctgaatcctgggcaggttcctctctggacctcaaatattctcacctg--ag-tgtgatgagacccaccaaaaagggttagtttgaggtttaaatgtga-taattcatgtatagtgcttagaaagcattcagtacatgttagcagtcat i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5742307 230 + 108171978 ATGAAAATTAAAATTACAAAATTA----AGTAAAAAAAGCAACTCCCAGATTGTATCTACAGTTTAATTAATGATGGAGattcactgggtttgactcctgggcaagttcctctctggaccttagt-ctcctcatcta-gaa-catcatgagacccactacagagggttgttttgaggtttaagtgtga-tgattcacatacggtgcttagAAATCACTCAATATATGTTAGTAGTCTT i micMur3.chr7 I 21 C 0 s proCoq1.NW_012136747v1 5106115 224 - 6317780 ATGAAAATTAAAATTAC------A----AGTGAAAAAAGCAACACACAGATTATATCTACAGTTTAATTAATGATGGAGactcactgggtttgaatcctgggcaagtttctctctggacctcagg-ttcctcatcta-gag-tgtgatgagacccaccacagagggttgttttgaggtttaagtgtga-tgattcctgtacagtgcttagaaagcactcaatatgtgttagcagtcat i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46121439 205 - 69331447 ATGCAAGTTAAAATTACAAGATTA----AGTGAAAAAAGCAACACAGC-CTAGTATCTCTAGT-----TAATGGCAGAGACTCTCTAGGTCTGGATCCTGGA-----------------CTCAG----TTTCATTTGGGAG-CACGAAGAAacccacctcagagggttactttgaggtttaaaagtga-taattcatgcaaagtgcttggAAAGCACTCAATCCATGTTAGCAATTGT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 102235 215 + 1056298 ATGAAAATTCAAAATACAAAATCAGTGGGGAAAAATAAGCAACACAGA-CTGGTATCTACAGT----GGAACA--GGAGAC------------AATTCtgggcaagttgttctcttgacctccat-ctcctcatgta-gaaccagggtgagacccaagtcccagggctatttggaggt-gaaatgtga-tagtccatgggaagtgcttagaaaacactcagcacaTGCTAGCAATCAT i dasNov3.JH570235 C 0 I 1 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=31109.000000 s hg38.chr22_GL383582v2_alt 108584 3 + 162811 tac s panTro5.chr22 28888486 3 + 37823149 tac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163081 3 + 50109623 tac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185912 3 + 4464012 tac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681684 3 - 115148730 tac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84296531 3 + 92844088 taT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87641178 3 - 96509753 taT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7132971 3 - 13098629 taT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4099804 3 - 4483953 taT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24730435 3 + 33263144 taT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14011128 3 - 14338769 taT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 949399 3 + 1946073 taT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977006 3 - 2117846 tac i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8887857 3 - 16357246 tac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373528 3 - 1807191 tac i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51609 3 + 5963231 tat i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5742537 3 + 108171978 TAA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5106339 3 - 6317780 taa i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46121644 3 - 69331447 TAC i canFam3.chr10 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=1813805.000000 s hg38.chr22_GL383582v2_alt 108587 153 + 162811 agtcattcctggcatccatggaggactggttccaggacctctgccaataccaaactccacggatgcccaagtcgcttatataaaatagcacagtatttgtatataagctaagcacatcctcctgtatactttaagccatctctagattatgta s panTro5.chr22 28888489 153 + 37823149 agtcattcctggcatccatggaggactggttccaggacctctgccaataccaaactccacggatgcccaagtcgcttatataaaatagcacagtatttgtatataagctaagcacatcctcctgtatactttaagccatctctagattacgta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163084 150 + 50109623 agtcattcctggcatccatggaggactggttccaggacctctgccaataccaaactccacggatgcccaagtcgcttatataaaatagcacagtatttgtatataagctaagcaca---tcctgtatactttaagccatctctagattacgta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3185915 153 + 4464012 agtcattcctggtatccatggaggactggttccaggacctctgccaataccaaactccacggatgcccaagtcgcttatataaaatagcacagtatttgtatataagctaagcacatcctcctgtatactttaagccatctctagattacgta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681687 153 - 115148730 agtcattcctggtatccatggaggactggttccaggacctctgccaataccaaactccacggatgcccaagtctcttatataaaatagcacagtatttgcatataagctaagcacatcctcctgtatactttaagccatctctagattacgta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84296534 153 + 92844088 agccgttcctggtatccatggaggactggttccaggacctctgccaataccaaactccatggatgcccaagtcgcttatataaaatagcacagtatttgtatataagctaagcacatccttctgtatactttaagctatctctagattacgta i rheMac8.chr10 C 0 I 527 s macFas5.chr10 87641181 153 - 96509753 agccattcctggtatccatggaggactggttccaggacctctgccaataccaaactccatggatgcccaagtcgcttatataaaatagcacagtatttgtatataagctaagcacatccttctgtatactttaagctatctctagattacgta i macFas5.chr10 C 0 I 2214 s macNem1.NW_012012688v1 7132974 153 - 13098629 agccgttcctggtatccatggaggactggttccaggacctctgccaataccaaactccatggatgcccaagtcgcttatataaaatagcacagtatttgtatataagctaagcacatccttctgtatactttaagctatctctagattacgta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4099807 152 - 4483953 agccgttcct-gtatccagggaggactggttccaggacctctgccaataccaaactccatggatgcccaagtctcttatataaaatagcacagtatttgtatataagctaagcacatcctcctgtatactttaagccatctctagattacgta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24730438 153 + 33263144 agccgttcctggtatccatggaggactggttccaggagctctgccaataccaaactccatggatgcccaagtctcttatataaaatagcacagtatttgtatataagctaagcacatcctcctgtatactttaagccatctctagattacgta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14011131 153 - 14338769 agccgttcctggtatccatggaggactggttccaggacctctgccaataccaaactccatggatgcccaagtctcttatataaaatagcacagtatttgtatataagctaagcacatcctcctgtatactttaagccatctctagattatgta i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 949402 153 + 1946073 agccattcctggtatccatggaggactggttccaggacctctgccaataccaaactccatggatgcccaagtctcttatataaaatagcacagtatttatatataagctaagcacatcctcctgtatactttaagccatctctagattacgta i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977009 152 - 2117846 agtcgctcctggtatccacggaggactggttccaggacctctgccaatatcaaactccat-gatgcccaagtctcttatataaaatagcatggtatttgtatgtaggctaagcacatcctgctgtatactttaagtcatctcgagattactta i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8887860 150 - 16357246 agtcgttcctgatatccacggaggactgattccaggacctctgccaataccaaactccat-gatgcctaagtctcttatataaaatagcacagtatttgtatgtaggctaagcacatcctgctgtatactttaagcca--tcgagattactta i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373531 150 - 1807191 agtcgttcctggtgtccagggaggactggttccaggacctctgccaataccaaactccat-gatgcccaagtctcttatataaaatagcacagtatttctatgtag--taagcacatcctgctgtatactttaagccatcctgagattactta i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51612 152 + 5963231 agtcgttcctggtatccacggaggactggttccaggacctctgccaataccaaactgcat-gatgcacaagtctcttatataaaatagcatagtatttgtatgtaggctaagcacatcctgctgtatactttcagccttctcgagattactta i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5742540 149 + 108171978 agtcatccctagtatctgtgggggattggttcaaggacctcccctgataccaaactccacggatactcaa-tccctgatataaaacggcacagtatttgcatataacct--gcacaagct-ctgtatactttaagtaatctctagattaccta i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5106342 150 - 6317780 agtcatccctggtatccgtgggggattggttcaaggacctccgctgataccaaactccacggatactcaagtctctgatataaaatggtacagtatttgcatataacct--gcacaaccc-ctgtataatttaagtaatctctagattaccta i proCoq1.NW_012136747v1 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I a score=669211.000000 s hg38.chr22_GL383582v2_alt 108740 96 + 162811 tgatacctaatatgatgtagctaatgctatgc--aa--agttg-ttatactttctcatttagagaataatgacaagaagaaaaaagtctg--tatatattcag s panTro5.chr22 28888642 96 + 37823149 tgatacctaatatgatgtagctaatgctatgc--aa--agttg-ttacactttctcatttagagaataatgacaagaagaaaaaagtctg--tatatattcag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163234 96 + 50109623 tgatacctaatatgatgtagctaatgctatgc--aa--agttg-ttacactttctcatttagagaataatgacaagaagaaaaaagtctg--tatatattcag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186068 94 + 4464012 tgatacctaatatgatgtaactaatgctatgc--aa--agttg-ttatactttctcacttagagaataatgacaagaag--aaaagtcta--tatatattcag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681840 77 - 115148730 tgatacctaata-----taactaatactatgc--aa--agttg-ttatactttctcatttagagaataatgacaagaa---aaagg-------------tcag i nomLeu3.chr7b C 0 C 0 s macNem1.NW_012012688v1 7133127 97 - 13098629 tgatatccaatatgatgtaactaatactatgc--aa--agttgtttatactttctcatctagaaaataatgacaagaagaaaaaagtctg--tatatattcag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4099959 97 - 4483953 tgatatccaatatgatgtaactaatactatgc--aa--agttgtttatactttctcatctagaaaataatgacaagaagaaaaaagtctg--tatatattcag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24730591 97 + 33263144 tgatatccaatatgatgtaactaatactaggc--aa--agttgtttatactttctcatctagaaaataatgacaagaagaaaaaagtctg--tatatattcag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14011284 97 - 14338769 tgatatccaatatgatgtaactaatactatgc--aa--agttgtttatactttctcatctagaaaataacgacaagaagaaaaaagtctg--tatatattcag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 949555 95 + 1946073 tggtatctaatatgatgtaactaatactatgc--aa--agttgtttatactttctcatctagaaaataatgacaagaagaaaaaagtc----tatatattcag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977161 87 - 2117846 tgatatctaatatgatgtaaataatgttaggc--aa--agttg-ttatgctgtatcatttagagagt---------aagaaaaaagtctg--catatattcag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888010 85 - 16357246 tgatgtctaatatgatgtaaatactgttatgc--aa--agttg-ttaggctgtatcatttagagaat---------aagaaaaaagtct----atatattcag i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373681 89 - 1807191 tgatatctaatatgatgtaaataatgttatgc--aa--agttg-ttatgctgtatcatttagagaat---------aagaaaaaagtctgtatatatattcag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51764 87 + 5963231 tgatatctaatatgatgtaaataatgttatgc--aa--agttg-ttatgctgtatcatttagagagt---------aagaaaaaagtcta--tatatgttcag i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5742689 97 + 108171978 taatacttaatacaaggta---aatgctatgcaaaaatagcta-ttatactgtattgtttggggaataatgacaagagggaaaaagtctg--tacatgttcag i micMur3.chr7 C 0 I 82 s proCoq1.NW_012136747v1 5106492 95 - 6317780 taatacttaatacaaggta---aatgctatgc--aaacagctg-ttatactgtattgtttagggaataatgacaagaggagaaaagtctg--tacatgttcag i proCoq1.NW_012136747v1 C 0 I 139 e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e macFas5.chr10 87641334 2214 - 96509753 I e rheMac8.chr10 84296687 527 + 92844088 I a score=27414.000000 s hg38.chr22_GL383582v2_alt 108836 4 + 162811 aaca s panTro5.chr22 28888738 4 + 37823149 aaca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163330 4 + 50109623 aaca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186162 4 + 4464012 aaca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681917 4 - 115148730 aaca i nomLeu3.chr7b C 0 C 0 s macNem1.NW_012012688v1 7133224 4 - 13098629 gaca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4100056 4 - 4483953 gaca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24730688 4 + 33263144 gaca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14011381 4 - 14338769 gaca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 949650 4 + 1946073 aaca i colAng1.NW_012115588v1 C 0 I 298 s calJac3.chrUn_GL286373 1977248 4 - 2117846 aaca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888095 4 - 16357246 aaca i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373770 4 - 1807191 aata i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51851 4 + 5963231 aaca i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I e micMur3.chr7 5742786 82 + 108171978 I e macFas5.chr10 87641334 2214 - 96509753 I e rheMac8.chr10 84296687 527 + 92844088 I a score=66052.000000 s hg38.chr22_GL383582v2_alt 108840 11 + 162811 gatggaatttt s panTro5.chr22 28888742 11 + 37823149 gatggaatttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163334 11 + 50109623 gatggaatttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186166 11 + 4464012 gatggaatttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681921 11 - 115148730 gatgaagtttt i nomLeu3.chr7b C 0 C 0 s macNem1.NW_012012688v1 7133228 11 - 13098629 aatggaaattt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4100060 11 - 4483953 aatggaatttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24730692 11 + 33263144 aatggaaTTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14011385 11 - 14338769 aatggaatttt i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 1977252 11 - 2117846 gatgaaatttt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888099 11 - 16357246 gatgaaatttt i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1373774 11 - 1807191 gatgaaatttt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51855 11 + 5963231 gatgaaatttt i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I e micMur3.chr7 5742786 82 + 108171978 I e colAng1.NW_012115588v1 949654 298 + 1946073 I e macFas5.chr10 87641334 2214 - 96509753 I e rheMac8.chr10 84296687 527 + 92844088 I a score=6006.000000 s hg38.chr22_GL383582v2_alt 108851 1 + 162811 t s panTro5.chr22 28888753 1 + 37823149 t i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163345 1 + 50109623 t i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186177 1 + 4464012 t i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681932 1 - 115148730 t i nomLeu3.chr7b C 0 C 0 s macNem1.NW_012012688v1 7133239 1 - 13098629 t i macNem1.NW_012012688v1 C 0 I 5460 s cerAty1.NW_011999588v1 4100071 1 - 4483953 t i cerAty1.NW_011999588v1 C 0 I 4 s chlSab2.chr19 24730703 1 + 33263144 T i chlSab2.chr19 C 0 I 4 s manLeu1.NW_012102031v1 14011396 1 - 14338769 t i manLeu1.NW_012102031v1 C 0 I 4 s calJac3.chrUn_GL286373 1977263 1 - 2117846 t i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1373785 1 - 1807191 t i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51866 1 + 5963231 t i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I e micMur3.chr7 5742786 82 + 108171978 I e saiBol1.JH378157 8888110 1 - 16357246 I e colAng1.NW_012115588v1 949654 298 + 1946073 I e macFas5.chr10 87641334 2214 - 96509753 I e rheMac8.chr10 84296687 527 + 92844088 I a score=-4031.000000 s hg38.chr22_GL383582v2_alt 108852 5 + 162811 cc------aag s panTro5.chr22 28888754 5 + 37823149 cc------aag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163346 6 + 50109623 cct-----aag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186178 5 + 4464012 cc------aag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681933 11 - 115148730 ccctccaaaaa i nomLeu3.chr7b C 0 C 0 s cerAty1.NW_011999588v1 4100076 3 - 4483953 CC------A-- i cerAty1.NW_011999588v1 I 4 C 0 s chlSab2.chr19 24730708 5 + 33263144 CC------ttt i chlSab2.chr19 I 4 I 1 s manLeu1.NW_012102031v1 14011401 5 - 14338769 CC------Att i manLeu1.NW_012102031v1 I 4 I 1 e aotNan1.NW_018512383v1 51867 0 + 5963231 C e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I e micMur3.chr7 5742786 82 + 108171978 I e cebCap1.NW_016107750v1 1373786 0 - 1807191 C e saiBol1.JH378157 8888110 1 - 16357246 I e calJac3.chrUn_GL286373 1977264 0 - 2117846 C e colAng1.NW_012115588v1 949654 298 + 1946073 I e macNem1.NW_012012688v1 7133240 5460 - 13098629 I e macFas5.chr10 87641334 2214 - 96509753 I e rheMac8.chr10 84296687 527 + 92844088 I a score=13104.000000 s hg38.chr22_GL383582v2_alt 108857 4 + 162811 tttt s panTro5.chr22 28888759 4 + 37823149 tttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163352 4 + 50109623 tttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186183 4 + 4464012 tttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681944 4 - 115148730 tttt i nomLeu3.chr7b C 0 C 0 s macNem1.NW_012012688v1 7138700 4 - 13098629 tttt i macNem1.NW_012012688v1 I 5460 C 0 s cerAty1.NW_011999588v1 4100079 4 - 4483953 tttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24730714 4 + 33263144 tttt i chlSab2.chr19 I 1 C 0 s manLeu1.NW_012102031v1 14011407 4 - 14338769 tttt i manLeu1.NW_012102031v1 I 1 C 0 e aotNan1.NW_018512383v1 51867 0 + 5963231 C e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I e micMur3.chr7 5742786 82 + 108171978 I e cebCap1.NW_016107750v1 1373786 0 - 1807191 C e saiBol1.JH378157 8888110 1 - 16357246 I e calJac3.chrUn_GL286373 1977264 0 - 2117846 C e colAng1.NW_012115588v1 949654 298 + 1946073 I e macFas5.chr10 87641334 2214 - 96509753 I e rheMac8.chr10 84296687 527 + 92844088 I a score=35280.000000 s hg38.chr22_GL383582v2_alt 108861 17 + 162811 tt-tttttttttt-----------------------gagac s panTro5.chr22 28888763 28 + 37823149 tt-ttttttttttttttttttttt------------gagac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163356 23 + 50109623 tt-tttttttttt-----tttgtt------------gagac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186187 40 + 4464012 tt-tttgtttttttttttttttttttttttttttgagacac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681948 30 - 115148730 tt-ttttttttttttttttttttt----------gagacac i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87643548 17 - 96509753 tt-ctttttgttt-----------------------gagat i macFas5.chr10 I 2214 I 2 s macNem1.NW_012012688v1 7138704 17 - 13098629 tt-tttttttttt-----------------------gagac i macNem1.NW_012012688v1 C 0 I 2 s cerAty1.NW_011999588v1 4100083 17 - 4483953 tt-tttttttttt-----------------------gagac i cerAty1.NW_011999588v1 C 0 I 214 s chlSab2.chr19 24730718 18 + 33263144 ttctttttttttt-----------------------gagac i chlSab2.chr19 C 0 I 2 s manLeu1.NW_012102031v1 14011411 17 - 14338769 tt-tttttttttt-----------------------gagac i manLeu1.NW_012102031v1 C 0 I 2 e aotNan1.NW_018512383v1 51867 0 + 5963231 C e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I e micMur3.chr7 5742786 82 + 108171978 I e cebCap1.NW_016107750v1 1373786 0 - 1807191 C e saiBol1.JH378157 8888110 1 - 16357246 I e calJac3.chrUn_GL286373 1977264 0 - 2117846 C e colAng1.NW_012115588v1 949654 298 + 1946073 I e rheMac8.chr10 84296687 527 + 92844088 I a score=65538.000000 s hg38.chr22_GL383582v2_alt 108878 16 + 162811 agtctcgctgtgtcgc s panTro5.chr22 28888791 16 + 37823149 agtctcgctgtgtcgc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163379 16 + 50109623 agtctcgctgtgtcgc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186227 16 + 4464012 agtctcgctctgtcgc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681978 16 - 115148730 agtctcggtctgttgc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84297214 16 + 92844088 agtcttgctctgtcac i rheMac8.chr10 I 527 C 0 s macFas5.chr10 87643567 16 - 96509753 agtcttgctctgtcac i macFas5.chr10 I 2 C 0 s macNem1.NW_012012688v1 7138723 16 - 13098629 agtcttgctctgttgc i macNem1.NW_012012688v1 I 2 C 0 s cerAty1.NW_011999588v1 4100314 16 - 4483953 agtcttgctctgtcac i cerAty1.NW_011999588v1 I 214 C 0 s chlSab2.chr19 24730738 16 + 33263144 agtcttgctctgttgc i chlSab2.chr19 I 2 C 0 s manLeu1.NW_012102031v1 14011430 16 - 14338769 agtcttgctttgttgc i manLeu1.NW_012102031v1 I 2 C 0 e aotNan1.NW_018512383v1 51867 0 + 5963231 C e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I e micMur3.chr7 5742786 82 + 108171978 I e cebCap1.NW_016107750v1 1373786 0 - 1807191 C e saiBol1.JH378157 8888110 1 - 16357246 I e calJac3.chrUn_GL286373 1977264 0 - 2117846 C e colAng1.NW_012115588v1 949654 298 + 1946073 I a score=561406.000000 s hg38.chr22_GL383582v2_alt 108894 112 + 162811 ccaggctggagtgcagtggcgtgatcttggctcactgcaagctccgcctcctggg-ttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgcca s panTro5.chr22 28888807 112 + 37823149 ctaggctggagtgcagtggcgtgatcttggctcactgcaagctccgcctcctggg-ttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccacca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163395 112 + 50109623 ccaggctggagtgcagtggcgtgatcttggctcactgcaagctccgcctcctggg-tttacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccacca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186243 112 + 4464012 ccaggctggagtgcagtggcgtgatcttggttcactgcaagctccgcctcctggg-ttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccacca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106681994 112 - 115148730 ccaggcaggagtgcagtggcatgatcttggctcactgcaagctccgcctcctggg-ttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccacca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84297230 113 + 92844088 ccaggctggagtgcagtggtgcaatcttggctcactgcaacctctgcctcccgagtttcaagccattcttctacctcagcctccctagtagctggaattacaggcgtgcagca i rheMac8.chr10 C 0 I 3 s macFas5.chr10 87643583 113 - 96509753 ccaggctggagtgcagtggtgcaatcttggctcactgcaacctctgcctcccgagtttcaagccattcttctacctcagcctccctagtagctggaattacaggcgtgcagca i macFas5.chr10 C 0 I 3 s macNem1.NW_012012688v1 7138739 112 - 13098629 ccaggctggagtgcaatggcctgatctcagctcactgccccctctctctcctggg-ttcaagccattcttctacctcagcctccctagtagctggaattacaggcgtgcagca i macNem1.NW_012012688v1 C 0 I 3 s cerAty1.NW_011999588v1 4100330 113 - 4483953 ccaggctggagtgcagtggtgcaatcttggctcactgcaacctctgcctcctgagtttcaagccattcttctacctcagcctccctagtagctggaattacaggcgtgcagca i cerAty1.NW_011999588v1 C 0 I 3 s chlSab2.chr19 24730754 112 + 33263144 ccaggctggagtgcagtggtgtgatctcggctcactgcaagctctgccttccggg-ttcacaccattctcctgcctcagtctcctgagtagctgagactacaagcacctgcca i chlSab2.chr19 C 0 I 216 s manLeu1.NW_012102031v1 14011446 112 - 14338769 ccaggctggagtgcagtggtgtgatctcggctcactgcaagctctgccttccggg-ttcacaccattctcctgcctcagcctcctgagtagctgagactacaagcacctgcca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 949952 113 + 1946073 ccaggctggagtgcagtggtacaatcttggctcactgcaacctccacctcccgagtttcaagccattcttctacctcagcctccctagtagctggaattacaggtgtgcacca i colAng1.NW_012115588v1 I 298 C 0 e aotNan1.NW_018512383v1 51867 0 + 5963231 C e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I e micMur3.chr7 5742786 82 + 108171978 I e cebCap1.NW_016107750v1 1373786 0 - 1807191 C e saiBol1.JH378157 8888110 1 - 16357246 I e calJac3.chrUn_GL286373 1977264 0 - 2117846 C a score=240810.000000 s hg38.chr22_GL383582v2_alt 109006 51 + 162811 ccacgtccagctaa--ttttttttgtatttttagtagagacagggtttcactg s panTro5.chr22 28888919 51 + 37823149 ccacgtccagctaa--ttttttttgtatttttagtagagatggggtttcactg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163507 51 + 50109623 ccacgtccagctaa--ttttttttgtatttttagtagagatggggtttcactg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186355 50 + 4464012 ccacgtccggctaa---tttttttgtatttttagtagagacggggtttcactg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682106 48 - 115148730 ccacgtccggctaa-----tttttgtatttttagtagagacggggtttcactg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84297346 48 + 92844088 ccacatccagctaa-----cttttgtatatttagtagagacggggtttcacca i rheMac8.chr10 I 3 C 0 s macFas5.chr10 87643699 48 - 96509753 ccacatccagctaa-----cttttgtatatttagtagagacggggtttcacca i macFas5.chr10 I 3 C 0 s macNem1.NW_012012688v1 7138854 48 - 13098629 ccacatccagctaa-----cttttgtatatttagtagagacggggtttcacca i macNem1.NW_012012688v1 I 3 C 0 s cerAty1.NW_011999588v1 4100446 48 - 4483953 ccacatccagctaa-----cttttgtatatttagtagagacggggtttcacca i cerAty1.NW_011999588v1 I 3 C 0 s chlSab2.chr19 24731082 48 + 33263144 ccacatccagctaa-----cttttgtatatttagtagagacggggtttcacca i chlSab2.chr19 I 216 C 0 s manLeu1.NW_012102031v1 14011558 53 - 14338769 ccacactcggctaattttttttttgtatttttagtagagacggggtctcaccg i manLeu1.NW_012102031v1 C 0 I 214 s colAng1.NW_012115588v1 950065 48 + 1946073 ccacttccagctaa-----cttttgtatatttagtagagatgggatttcacca i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512383v1 51867 0 + 5963231 C e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I e micMur3.chr7 5742786 82 + 108171978 I e cebCap1.NW_016107750v1 1373786 0 - 1807191 C e saiBol1.JH378157 8888110 1 - 16357246 I e calJac3.chrUn_GL286373 1977264 0 - 2117846 C a score=558969.000000 s hg38.chr22_GL383582v2_alt 109057 99 + 162811 tgttggccaggctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaggttctgggattacaggcgtgagccactgcgccctgcc s panTro5.chr22 28888970 99 + 37823149 tgttggccaggctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaggttctgggattacaggcgtgagccactgcgccccgcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163558 99 + 50109623 tgttggccaggctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaggttctgggattacaggcgtgagccactgcgccccgcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186405 99 + 4464012 tgttggccaggctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaggttctgggattacaggcgtgagccactgcaccccacc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682154 99 - 115148730 tgttggccaggctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaggttctgggattacacgcgtgagccactgtgccccgcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84297394 99 + 92844088 tgttggccaggctggtcttgaactcctgacttcagatgatccacccaccttggccttccaagtttctgggattacaggcatgagacactgtggcccgcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87643747 99 - 96509753 tgttggccaggctggtcttgaactcctgacttcagatgatccacccaccttggccttccaagtttctgggattacaggcatgagacactgtggcccgcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7138902 99 - 13098629 tgttggccaggctggtcttgaactcctgacttcagatgatccacccaccttggccttccaagtttctgggattacaggcatgagacactgtggcccgcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4100494 99 - 4483953 tgttggtcaggctggtcttgaactcctgacttcagatgatccacccaccttggccttccaagtttctgggattacaggcatgagacactgtggcccgcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731130 99 + 33263144 tgttggccaggctggtcttgaactcctgacttcagatgatccacccaccttggccttccaagtttctgggattacaggcatgagacactgtggcccgcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14011825 99 - 14338769 tgttggtcaggctggtcttgaactcctgacttcagatgatccacccaccttggccttccaagtttctgggattacaggcatgagacactgtggcccgcc i manLeu1.NW_012102031v1 I 214 C 0 s colAng1.NW_012115588v1 950113 97 + 1946073 tgttggccaggctggtcttgaactcctgacctcagatgatccacccaccttggccttccaagtttctgggattacaggc--gagtcactgtggcccgcc i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512383v1 51867 0 + 5963231 C e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I e micMur3.chr7 5742786 82 + 108171978 I e cebCap1.NW_016107750v1 1373786 0 - 1807191 C e saiBol1.JH378157 8888110 1 - 16357246 I e calJac3.chrUn_GL286373 1977264 0 - 2117846 C a score=732551.000000 s hg38.chr22_GL383582v2_alt 109156 74 + 162811 ccctccaaatatttccaatctgctgttgattgaatctaagaatgcagaacccatgaatatg----ggaagctaactgT s panTro5.chr22 28889069 74 + 37823149 ccctccaaatatttccaatctgctgttgattgaatctaagaatgcagaacccatgaatatg----ggaagctaactgT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163657 74 + 50109623 ccctccaaatatttccaatctgctgttgattgaatctaagaatgcagaacccatgaatatg----ggaagctaactgT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186504 74 + 4464012 ccctccaaatatttccaatctgctgttgattgaatctaagaatgcagaacccatgaatatg----ggaagctaactgT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682253 70 - 115148730 ccctccaaatatttccagtctgctg----ttgaatctaagaatgcagaacccatgaatatg----ggaagctgcctat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84297493 74 + 92844088 CCCtccaattattttcaatctgctgttgattgaatccaagaacgcagaacccatgaatatg----ggaagctgactgT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87643846 74 - 96509753 CCctccaattattttcaatctgctgttgattgaatccaagaacgcagaacccatgaatatg----ggaagctgactgT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139001 74 - 13098629 ccctccaattattttcaatctgctgttgattgaatccaagaacgcagaacccatgaatatg----ggaagctgactgT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4100593 74 - 4483953 CCttccaattattttcaatctgctgttgattgaatccaagaatacagaacacatgaatatg----gggagctgactgT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731229 74 + 33263144 CCctccaattattttcaatctgctgttgattgaatccaagaatgcagaacccatgaatatg----gggagctgactgT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14011924 74 - 14338769 CCCtccaattattttcaatctgctgttgattgaatccaagaatgcagaacccatgaatatg----gggagctgactgT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950210 74 + 1946073 CCCtccaaatattttcaatctgccgttgattgaatccaagaatgcagaacccatgaatatg----gggagctgactgT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977264 78 - 2117846 ccctccaaatattttcaatctgctgttgattgaatccaagaatgtagaacccatgaacatggggagggagctgactgT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888111 73 - 16357246 ccctccaaatatttttaatctgctgttgattgaatccaagaatgtagaacccatgaatat-----gggagctgactgT i saiBol1.JH378157 I 1 C 0 s cebCap1.NW_016107750v1 1373786 74 - 1807191 ccctccaaacattttcaatctgctgttgatggaatccaagaatgtagaacccatgaatatg----gggagctgattgT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51867 74 + 5963231 ccctccaaatattttcaatctgctgttgattgaatccaagaatgtagaacccatgaatatg----gggagctaactgt i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e dasNov3.JH570235 102450 1 + 1056298 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I e micMur3.chr7 5742786 82 + 108171978 I a score=22800.000000 s hg38.chr22_GL383582v2_alt 109230 2 + 162811 AT s panTro5.chr22 28889143 2 + 37823149 AT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163731 2 + 50109623 AT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186578 2 + 4464012 AT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682323 2 - 115148730 at i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84297567 2 + 92844088 AT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87643920 2 - 96509753 AT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139075 2 - 13098629 AT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4100667 2 - 4483953 AT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731303 2 + 33263144 AT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14011998 2 - 14338769 AT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950284 2 + 1946073 GT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977342 2 - 2117846 AT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888184 2 - 16357246 AT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373860 2 - 1807191 AT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51941 2 + 5963231 at i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 102451 2 + 1056298 AT i dasNov3.JH570235 I 1 C 0 e mm10.chr15 82840349 84 + 104043685 I e canFam3.chr10 46121647 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I e micMur3.chr7 5742786 82 + 108171978 I a score=113514.000000 s hg38.chr22_GL383582v2_alt 109232 10 + 162811 TATACT---ATTA s panTro5.chr22 28889145 10 + 37823149 TATACT---ATTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163733 10 + 50109623 TATACT---ATTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186580 10 + 4464012 TATACT---ATTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682325 10 - 115148730 tatact---atta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84297569 10 + 92844088 TACACT---ATTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87643922 10 - 96509753 TATACT---ATTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139077 10 - 13098629 TATACT---ATTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4100669 10 - 4483953 TACACT---ATTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731305 10 + 33263144 TATACT---ATTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012000 10 - 14338769 TACACT---ATTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950286 10 + 1946073 TATACT---ATTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977344 10 - 2117846 TACACT---ATTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888186 10 - 16357246 TACACT---ATTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373862 10 - 1807191 TACACT---ATTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51943 10 + 5963231 tacact---atta i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46121647 10 - 69331447 TACACT---ATTA i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 102453 13 + 1056298 TACACTGGAATTA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I e micMur3.chr7 5742786 82 + 108171978 I a score=576982.000000 s hg38.chr22_GL383582v2_alt 109242 49 + 162811 TATCTAGTGAAATAATC-AGCACATGGACAAAATCTAG--A------AGAGTCAGATA s panTro5.chr22 28889155 49 + 37823149 TATCTAGTGAAATAATC-AGCACATGGACAAAATCTAG--A------AGAGTCAGATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163743 49 + 50109623 TATCTAGTGAAATAATC-AGCACATGGACAAAATCTAG--A------AGAGTCAGATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186590 51 + 4464012 TATCTAGTGAAATAATC-AGCACATGGACAAAATCTAGAAA------AGAGTCAGATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682335 47 - 115148730 tATGTAGTGAAATAATC-AGCACATGGACAAAATCTAG--A------AAAG--AGATA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84297579 51 + 92844088 TATCTAGTGAAATAATC-AGCACATGGACAAAGTCTAGAAA------AGAGGCAGATA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87643932 51 - 96509753 TATCTAGTGAAATAATC-AGCACATGGACAAAGTCTAGAAA------AGAGGCAGATA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139087 51 - 13098629 TATCTAGTGAAATAATC-AGCACATGGACAAAGTCTAGAAA------AGAGGCAGATA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4100679 51 - 4483953 TATCTAGTGAAATAATC-AGCACATGGACAAAGTCTAGAAA------AGAGGCAGATA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731315 51 + 33263144 TATCTAGTGAAATAATC-AGCACATGGACAAAGTCTAGAAA------AGAGGCAGATA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012010 51 - 14338769 TATCTAGTGAAATAATC-AGCACATGGACAAAGTCTAGAAA------AGAGGCAGATA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950296 51 + 1946073 TATCTAGTGAAATAATC-AGCACATGGACAAAGTCTAGAAA------AGAGGCAGATA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977354 51 - 2117846 TATCTAGTTAAATCATC-AGCACATGGACAAAATCTAGGAA------AGAGGGAGATA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888196 57 - 16357246 TATCTAGTTAAATCATC-AGCACATGGACAAAATCTAGTGGCTCACTAGAGGCAGATA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373872 51 - 1807191 CATCTAGTTAAATCATC-AGCACATGGACAAAATCTAGGAA------GAGAGCAGATA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 51953 51 + 5963231 tATCTAGTTAAATCATC-AGCACATGGACAAAATCTAGGAA------AGAGGTAGATA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5742868 51 + 108171978 TATCTAGTAAAATAATA-AGCATATGGAATAAATCTAGAAA------AGAGGCAAATT i micMur3.chr7 I 82 C 0 s canFam3.chr10 46121660 52 - 69331447 TATCTAGTAAAACAAGCAAGCACATGGACAAAATCTAGAAA------AGAGGCAAACT i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 102466 39 + 1056298 TATCCA-TAAAATAATA-AGCACATGGA-----------AA------AGAAGCATATT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106587 139 - 6317780 I a score=832692.000000 s hg38.chr22_GL383582v2_alt 109291 67 + 162811 TGTTGGGTTATCAGGATTGCGG----CATTCTTCTACGAACAGTTCCATTAGTTTTACAA-----------TAAGAATAATA s panTro5.chr22 28889204 67 + 37823149 TGTTGGGTTATCAGGATTGCGG----CATTCTTCTACGAACAGTTCCATTAGTTTTACAA-----------TAAGAATAATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163792 67 + 50109623 TGTTGGGTTATCAGGATTGCGG----CATTCTTCTACGAACAGTTCCATTAGTTTTACAA-----------TAAGAATAATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186641 67 + 4464012 TGTTGGGTTATCAGGATTGCGG----CATTCTTTTACGAACAGTTCCATTAGTTTTACAA-----------TAAGAATAATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682382 78 - 115148730 TGTTGGGTTATCAGGATCGTGG----CGTTCTTTTACTAACAGTTCCATTAGTTTTACTAATAATAATACTTAAGAATAATA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84297630 65 + 92844088 TGTTGGGTTATCAGGATTATGG----CATTCTTTTACTAACAGTTCCATTAGTTTTACAA-----------TAATAATAA-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87643983 65 - 96509753 TGTTGGGTTATCAGGATTATGG----CATTCTTTTACTAACAGTTCCATTAGTTTTACAA-----------TAATAATAA-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139138 65 - 13098629 TGTTGGGTTATCAGGATTATGG----CATTCTTTTACTAACAGTTCCATTAGTTTTACAA-----------TAATAATAA-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4100730 67 - 4483953 TGTTGGGTTATCAGGATTATGG----CATTCTTTTACTAACAGTTCCATTAGTTTTACAA-----------TAATAATAATA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731366 67 + 33263144 TGTTGGGTTATCAGGATTATGG----CATTCTTTTACTAACAGTTCCATTAGTTTTACAA-----------TAAGAATAATA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012061 67 - 14338769 TGTTGGGTTATCAGGATTATGG----CATTCTTTTACTAACAGTTCCATTAGTTTTACAA-----------TAATAATCATA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950347 67 + 1946073 TGTTGGGTTATCAAGATTGTGG----CATTCTTTTACTAACAGTTCCATTAGTTTTACAA-----------TAAGAATAATA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977405 70 - 2117846 TGCTGGG-TATCAGGATTGTGGCTGACTTCCTTTTACTAACAGTTCCATTTGTTTTACAA-----------TACGAATAATA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888253 70 - 16357246 TGCTGGG-TATCAGGATTGTGGCTGACTTTCTTTTACTAACAGTTCCATTTGTTTTACAA-----------TATGAATAATA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373923 68 - 1807191 TGCTGGG-TATCAGGATTGTGGCTGACTT--TTTTACTTACAGTTCCATTTGTTTTACAA-----------TATAAATAATA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 52004 70 + 5963231 TGCTGGG-TATCAGGATTGTGGCTGACTTTCTTTTACTAACAGTTCCATTTGTTTTACAA-----------TATGAATAATA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5742919 67 + 108171978 TGCTGGGTTATCAGGATTGTGA----CTTTCTTTTACTAACAGTTCCATTAGTTTCACAA-----------TATGAATAATA i micMur3.chr7 C 0 I 302 s proCoq1.NW_012136747v1 5106726 67 - 6317780 TGTTGGGTTATCAGGATTGTGA----CTTTCTTTTACTAACAGTTCCATTAGTTTCACAA-----------TATGAATAATA i proCoq1.NW_012136747v1 I 139 I 509 s canFam3.chr10 46121712 67 - 69331447 TAGTGGGTTATCAGGATTGTGG----TTTGCCTTTACCTACAGTTCTAGTAGTTTTACAA-----------TACGAGTAACA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 102505 64 + 1056298 TGTTGTATTATCAGGATAATGA----CTT--TGTTATTTAAGGTTCCATTAGCTTTACA------------TGTGAATAATA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=1002310.000000 s hg38.chr22_GL383582v2_alt 109358 115 + 162811 CTG-------TTATCTTTATGTAAATA--------ATATGTAAA-------------------------------------------------------------------------TCTTTTTCATGACTCAGGAGTTCAAATGGGAACCCTGACCA-GCACAGATGGTGCCAGCACCTCATCTAAACCCTGTGGCCAATTTT s panTro5.chr22 28889271 115 + 37823149 CTG-------TTATCTTTATGTAAATA--------ATATGTAAA-------------------------------------------------------------------------TCTTTTTCATGACTCAGGAGTTCAAATGGGAACCCTGACCA-GCACAGATGGTGCCAGCACCTCATCTAAACCCTGTGGCCAGTTTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163859 115 + 50109623 CTG-------TTATCTTTATGTAAATA--------ATATGTAAA-------------------------------------------------------------------------TCTTTTTCATGACTCAGGAGTTCAAATGGGAACCCTGACCA-GCACAGATGGTGCCAGCACCTCATCTAAACCCTGTGGCCAGTTTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186708 115 + 4464012 CTG-------TAATCTTTATGTAAATA--------ATATGTAAA-------------------------------------------------------------------------TCTTTTTCATGACTCAGGAGTTCAAATGGGAACCTTGACCA-GCACAGATGGTGCCAGCACCTCATCTAAACCCTGCGGCCAGTTTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682460 115 - 115148730 CTG-------TTATCTTTATGTAAATA--------CTATGTAAA-------------------------------------------------------------------------TCTTTTTCATGACTCAGGAGTACAACTGGGAACCCTGACTA-GCACAGATGGTGCCAGCACCTCATCTAAACCCTGAGGCCAGTTTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84297695 111 + 92844088 -TG-------TTATCTTTATGTAAATA--------ATACACAAA----------------------------------------------------------------------------TTTTCATGACTCAGGAGTACAACTGGGAACCTTGACCA-GCACGGATGGTGCCAGCACCTCATCTAAACGCTGAGGCCAGTTTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644048 111 - 96509753 -TG-------TTATCTTTATGTAAATA--------ATACATAAA----------------------------------------------------------------------------TTTTCATGACTCAGGAGTACAACTGGGAACCTTGACCA-GCACGGATGGTGCCAGCACCTCATCTAAACGCTGCGGCCAGTTTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139203 111 - 13098629 -TG-------TTATCTTTATGTAAATA--------ATACATAAA----------------------------------------------------------------------------TTTTCATGACTCAGGAGTACAACTGGGAACCTTGACCA-GCACGGATGGTGCCAGCACCTCATCTAAACGCTGCGGCCAGTTTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4100797 112 - 4483953 CTG-------TTATCTTTATGTAAATA--------ATACATAAA----------------------------------------------------------------------------TTTTCATGACTCAGGAGTACAACTGGGAACCTTGACCA-GCACGGATGGTGCCAGCACCTCATCTAAACGCTGCGGCCAGTTTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731433 112 + 33263144 CTG-------TTATCTTTATGTAAATA--------ATACATAAA----------------------------------------------------------------------------TTTTCATGACTCAGGAGTACAACTGGGAACCTTGACCA-GCACGTATGGTGCCAGCACCTCATCTAAACCCTGCGGCCAGTTTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012128 112 - 14338769 CTG-------TTATCTTTATGTAAATA--------ATACATAAA----------------------------------------------------------------------------TTTTCATGACTCAGGAGTACAACTGGGAACCTTGACCA-GCACGGATGGTGCCAGCACCTCATCTAAACGCTGCGGCCAGTTTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950414 112 + 1946073 CTG-------TTATCTTTATGTAAATA--------ATACATAAA----------------------------------------------------------------------------TTTTCATGACTCAGGAGTACAACAGGGAACCTTGACCA-GCACGAATGGTGCCAGCACCTCATCTAAACCCTGCAGCCAGTTTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977475 111 - 2117846 CTG-------TTACTTTTATGCAAA-----------TATGTAAA-------------------------------------------------------------------------TATTTTTCATGACTCAGGAGTACAACTGGGAATCTCGACCA-GCATA-ATGGTACCAGCACCTCATGTAAACCCTGTGGCCACTTTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888323 111 - 16357246 CTG-------TTACCTTTATGAAAA-----------TACGTAAA-------------------------------------------------------------------------TCTTTTTCATGACTC-GGAGTACAACTGGGAATCTCAACCA-GCACAGATGGTACCAGTTCCTCATGTAAACACTATGGCCACTTTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1373991 112 - 1807191 CTG-------TTACCTTTATGCAAA-----------TACATAAG-------------------------------------------------------------------------TCTTTTTCATGACTCAGAAGTAAAACTGGGAATCTCGACCA-GCACAAATGGTACCAGCACCTCATGTAAACCCCGTGGCTACTTTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 52074 112 + 5963231 CTG-------TTACCTTTATGCAAA-----------TACGTAAA-------------------------------------------------------------------------TCTTTTTCATGACTCAGGAGTACAACTGGGAATCTCGACCA-GCACAGATGGTACCAGCACCTCATGTAAACCCTGCGGCCACTTTA i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46121779 137 - 69331447 CTGTAATCATTTACTCTTATGTAAACATGTAATTCGTTCATAAAA--------------GGTATTTT--------------------------------------------------ACCTTTTCAAAACTTATGAGTTAAGACTGAGCCTCAAGCC---CACAGACACACCCAGCACCCCCTCTAAACCCTGTGGCCAGTTTG i canFam3.chr10 C 0 I 5 s dasNov3.JH570235 102569 187 + 1056298 TTT-------TTACCTTTA-GTAAACA--------ACATGTAACACATCtttataaaataatattttatataCTACCCTTTATAAAAGGTGTTACAGAATTCTATGAACTCATTTCATCTTTTTTGTGTCTGAGGAATAAGACTGTGGATGTCAAGGATACTCAGCTGTGCCCAGCACCCCCTCCAGA-GCTGCGCCCATCTGC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840349 84 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5742986 302 + 108171978 I a score=1828448.000000 s hg38.chr22_GL383582v2_alt 109473 196 + 162811 ---TCTTTTCTTCTGCC-TTTTC------CCATGTTTCTTGCTCCT------------------------TCC-----------TATGGG------------CAG-------------------------------------AGCGACGATTCCCACTTCAGAGCCCATTTCACCATAGAGTC---ATGTGGTAGCACTTTGCCTAGCCTCAATTCAGTGCATAAAGGCA-CGAGGCTG--CATTCT-GAA--ACT--GAGGAAATAGGGTACAACTGTGCACAAC-------AGAGAGGTTTTCTTC s panTro5.chr22 28889386 196 + 37823149 ---TCTTTTCTTCTGCC-TTTTC------CCATGTTTCTTGCTCCT------------------------TCC-----------TATGGG------------CAG-------------------------------------AGAGACGATTCCCACTTTAGAGCCCATTTCACCATAGAGTC---ATGTGGTAGCACTTTGCCTAGCCTCAATTCAGTGCATAAAGGCA-TGAGGCTG--CATTCT-GAA--ACT--GAGGAAATAGGGTACAACTGTGCACAAC-------AGAGAGGTTTTCTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41163974 196 + 50109623 ---TCTTTTCTTCTGCC-TTTTC------CCATGTTTCTTGCTCCT------------------------TCC-----------TATGGG------------CAG-------------------------------------AGAGACGATTCCCACTTTAGAGCCCATTTCACCATAGAGTC---ATGTGGTAGCACTTTGCGTAGCCTCAATTCAGTGCATAAAGGCA-TGAGGCTG--CATTCT-GAA--ACT--GAGGAAATAGGGTACAACTGTGCACAAC-------AGAGAGGTTTTCTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3186823 197 + 4464012 ---TCTTTTCTTCTGCC-TTTTC------CCATGTTTCTTGCCACT------------------------TCC-----------TATGGG------------CAG-------------------------------------AGCGACGATTCCCACTTCAGAGCCCATTTCACCATAGAGTC---AAGTGGTAGCACTTTGCCTAGCCTCAATTCAGTGCATAAAGGCACTGAAGCTG--CATTCC-GAA--ACT--GAGGAAATAGGGTACAACTGTGCACAAC-------AGAGAGGTTTTCTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682575 197 - 115148730 ---TCTTTTCTTCTGCC-TTTTC------CCATGTTTCTTGCCACT------------------------TCC-----------TATGGA------------TAG-------------------------------------AGCGACGATTCCCATTTCAGAGCCCATCTCACCATAGAGTC---AAGTGCTAGCACTTTGCCTAGCCTCAATTCAGTGCATAAAGGCACTGAGGCTG--CATTCT-GAA--ACT--GAGGAAATAGGGTACAACTGTGCACAAC-------AGAAAGGTTTTCTTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84297806 191 + 92844088 ---TCTTTTCTTCTGCC-TTTTC------CCACGTTTCCTGCCGCT------------------------TCC-----------TATGGG------------TAG-------------------------------------AGCAACGATTCCCACTTCAGAGCCCATTTCGCTATAAA--------GTGCTAGCACTTGGCCTCGTCTCAGTTCAGTGCATAAAGGCACTGAGGCTGCACATTCT-GAA--ACC--GAGGCAACAGGGTGC-AC--TGCACAGC-------AGAGAGGTCTTCTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644159 191 - 96509753 ---TCTTTTCTTCTGCC-TTTTC------CCACGTTTCCTGCCGCT------------------------TCC-----------TATGGG------------TAG-------------------------------------AGCAACGATTCCCACTTCAGAGCCCATGTCGCTATAAA--------GTGCTAGCACTTGGCCTCGTCTCAGTTCAGTGCATAAAGGCACTGAGGCTGCACATTCT-GAA--ACC--GAGGCAACAGGGTGC-AC--TGCACAGC-------AGAGAGGTCTTCTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139314 189 - 13098629 ---TCTTTTCTTCTGCC-TTTTC------CCACGTTTCCTGCCGCT------------------------TCC-----------TATGGG------------TAG-------------------------------------AGCAACGATTCCCACTTCAGAGCCCATTTCGCTATAAA--------GTGCTAGCACTTGGCCTAGTCTCAGTTCAGTGCATAAAGGCACTGAGGCTG--CATTCT-GAA--ACT--GAGGCAACAGGGTGC-AC--TGCACAAC-------AGAGAGGTCTTCTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4100909 190 - 4483953 ---TCTTTTCTTCTGCC-TTTTC------CCACGTTTCCTGCCGCT------------------------TCC-----------TATGGG------------TAG-------------------------------------AGCAACGATTCCCACTTCAGAGCCCATTTCGCTATAAA--------GTGCTAGCACTTGGCCTAGTCTCAATTCAGTGCATAAAGGCACTGAGGCTG--CATTCT-GAA--ACT--GAGGCAATAGGGTGCAAC--TGCACAAC-------AGAGAGATTTTCTTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731545 191 + 33263144 ---TCTTTTCTTCTGCCTTTTTC------CCATGTTTCCTGCTACT------------------------TCC-----------TATGGG------------TAC-------------------------------------AGCAACGAATCCCACTTCAGAGCCCATTTCGCCATAAA--------GTGCTAGCACTTGGCCTAGTCTCAATTCAGTGCATAAAGGCACTGAGGCTG--CATTCT-GAA--ACT--GAGGCAATAGGGTGCAAC--TGCACAAC-------AGAGAGGTTTTCTTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012240 190 - 14338769 ---TCTTTTCTTCTGCC-TTTTC------CCACGTTTCCTGCCGCT------------------------TCC-----------TATGGG------------TAG-------------------------------------AGCAACGATTCCCACTTCAGAGCCCATTTCGCTATAAA--------GTGCTAGCACTTGGTCTAGTCTCAATTCAGTGCATAAAGGCACTGAGGCTG--CATTCT-GAA--ACT--GAGGCAATAGGGTGCAAC--TGCACAAC-------AGAGAGGTTTTCTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950526 190 + 1946073 ---TCTTTTCTTCTGCC-TTTTC------CCATGTTTCCTGCCGCT------------------------TCC-----------TATGGG------------AAG-------------------------------------AGCAACGATTCCCACTTCAGAGCCCATTTCGCTATAAA--------GTGCTAGCACTTGGCCTAGTCTCAATTCAGTGCATAAAGGCACCGAGGCTG--CATTCT-GAA--ACT--GAGGAAATAGGGTGCAAC--TGCACAAC-------AGCGAGGTTTTCTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977586 197 - 2117846 ---TCTTTTCTTCTGCC-TCTTC------CCATGTTTCTTGCCACT------------------------TCC-----------TATGGG------------CAG-------------------------------------AGGGACAATTCCTACTTCAGAACCCATTTCACTGGAGAGTA---AAGTGCAAGCACTCTGCCTAGCCTCAATTCCGTGCATAATGGCACTCAAGCTG--CATTCT-GAA--ACT--GAGGAAATAGGGTGACACTGTGCACAAC-------AGAGAGGTTTTCTTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888434 200 - 16357246 ---TCTTTTCTTCTGCC-TCTTC------CCATGTTTCTTGCCACT------------------------TCC-----------AATGGG------------CAG-------------------------------------AGGGACAATTCCTACTTCAGAACCCATTTCACTAGAGAGTAAAGAAGTGCAAGCCCTCTGCTTAGCCTCAATTCAGTGTATAATGGCACTCAAGCTG--CATTCT-GAA--ACT--GAGGAAATAGGGTGCAACTGTGCAAAAC-------AGAGAGGTTTTCTTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1374103 197 - 1807191 ---TCTTTTCTTCTGCC-TCTTC------CCGTGTTTCTTGCCACT------------------------TCC-----------TATGGG------------CAG-------------------------------------AGGGACAACTCCTACTTCAGAGCCCATTTTACTAGAGAGTA---AAGTGCAAGCACTCTGCTTAGCCTCAATTCATTGCATCATGGCACTCAAGCTG--CATTCT-GAA--ACT--GAGGAAATAGGGTGCAACTGTGTACAAC-------AGAGAGGTTTTCTTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 52186 197 + 5963231 ---TCTTTTCTTCTGCC-GCTTC------CCACGTTTCTTGCCACT------------------------TCC-----------TATGGG------------CAG-------------------------------------AGGGACAATTCCTACTTCAGAGCCCATTTCACTAGAGAGTA---AAGTGCAAGCACTCTGCCTAGCCTCAATTCAGTGCATAATGGCACTCAAGCTG--CATTCT-GAA--ACT--GAGGAAATAGGGTGCAACTGTGCACAAC-------AGAGAGGTTTTCTTC i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82840433 230 + 104043685 ---TCTTCTCTTTTGCA-TTTCCGAATATCTCCATTTCCTGTCACT-------GGAATTATGTCAGG---CCC-----------TCAGAGAAAGTATGCATCCAT-------------------------------------AGCATCAATTTCCACTTCAAAGCCCATTTGAATAAACAGTA---AAGT---AGTGCATTGTCTAGTTTCAATTCAATGTACAAAAGCT-TTAAGCTA--CTTTCTAGGA--ACT--CTGGGAAATAGTTGCTAC--TATGCAACCATATGTAGAGAGGGGGTATT- i mm10.chr15 I 84 C 0 s canFam3.chr10 46121921 215 - 69331447 ---CCTGCTCTTCTGCC-CTTTC------CCA-ATGTCCTGCTTCTTGTGAGTGGAACTGTCTCAGACCCTCCAAAAATAAGTGTCTGTG------------CAT-------------------------------------AGTGACAATCTGAACCTCTGGACCCTAATGACCTCAAAGTA---AAGTGCATGCAC-----------TCAGTTCAACACACAGAGACC-TGAGGCTA--CCTCCT-GGA--ACTCCGAGAAAATGAAGCGCTACCTTGCACAGC-------AG------CTTTTTC i canFam3.chr10 I 5 C 0 s dasNov3.JH570235 102756 215 + 1056298 TGGGCTCCTGTGCTGCA-CTCTT------CCTGGATTCCTGTTGCT------------------------TCT-----------TGTGAG------------AAGCACGGTCCCAGGACCTTAGAAAATAAGTGTCCATCCCAGTGACAATTTTAACTTCACAGCTCATTTGCCTACAGAGTA---AAGT-----------GTCTAGCCTCAGTTCAA--CACAAGGGCT-------TT--CATTCT-GCAACACT--GAGAGAACAGGGTGCTACCAAATATAAC-------AAAA----TTTTTTC i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5742986 302 + 108171978 I a score=566314.000000 s hg38.chr22_GL383582v2_alt 109669 60 + 162811 AGGCCCATAAA---AATGTTTGACATGT-----GCTCTTTCTCAGTGTAATTAAATACAGTCTTGGTT s panTro5.chr22 28889582 60 + 37823149 AGGCCCATAAA---AATGTTTGACATGT-----GCTCTTTCTCAGTGTAATTAAATACAGTCTTGGTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164170 60 + 50109623 AGGCCCATAAA---AATGTTTGACATGT-----GCTCTTTCTCAGTGTAATTAAATACAGTCTTGGTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187020 58 + 4464012 AGGCCCATAAA---AATGTTTGAC--GT-----GCTCTTTCTCAGTGTAATTAAATACAGTCTTGGTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682772 60 - 115148730 AGGCCCATAAA---AATGTTTGACATGT-----GCTCTCTCTCAGTGTAATTAAATACAGTCTTGGTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84297997 54 + 92844088 AGGCCCATAAA---AATGTTTGATATGT-----GCTCTTTCTCAG-----TTAAACACAGTCTTGG-T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644350 54 - 96509753 AGGCCCATAAA---AATGTTTGATGTGT-----GCTCTTTCTCAG-----TTAAACACAGTCTTGG-T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139503 54 - 13098629 AGGCCCATAAA---AATGTTTGATACGT-----GCTCTTTCTCAG-----TTAAACATAGTCTTGG-T i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101099 58 - 4483953 AGACCCATAAA---AATGTTTGATATGT-----GCTCTTTCTCAGT-TAATTAAATATAGTCTTGG-T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731736 58 + 33263144 AGGCCCATAAA---AATGTTTGATATGT-----GCTCTTTCTCAGT-TAATTAAATACAGTCTTGG-T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012430 58 - 14338769 AGACCCATAAA---AATGTTTGATATGT-----GCTCTTTCTCAGT-TAATTAAATATAGTCTTGG-T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950716 58 + 1946073 AGGCCCATAAA---AATGTTTGATACGT-----GCTCTTTCTCAGT-TAATTAAATATAGTCTTGG-T i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977783 59 - 2117846 AGACCAATC-A---AATGTTTGATACAT-----GCTCTTTCTCAGTATAATTAAGCACAGTCTTGGCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888634 60 - 16357246 AGACCAATCAA---AATGTTTGATACGT-----GCTCTTTCTCAGTATAATTAAGTACAATCTCGGCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1374300 60 - 1807191 AGACCAATCAA---AATGTTTGATATGT-----GCTCTTTCTCAGTATAATTAAGTACAATCTTGGCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 52383 60 + 5963231 AGACCAATCAA---AATATTTGATATGT-----GCTCTTTCTCAGTATAAATAAGTACAATCTTGGCT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5743288 60 + 108171978 AGGTCCATAAA---AATGTTTCATATCA-----GCTCTTTCTTGGTGTAATTAAATGCAGTCTTGGTT i micMur3.chr7 I 302 I 158 s mm10.chr15 82840663 58 + 104043685 -GGACAGTA-A---AATCACTGATTTGC-----CTCGGATCTAACCACAATTAAATGTAATTGTAGTT i mm10.chr15 C 0 C 0 s canFam3.chr10 46122136 62 - 69331447 AGGCCCCCAAAAGTAATGCTTCATATCA-----GCTACTTCTTACTATAATTAAATGCAATTTAGTA- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 102971 66 + 1056298 AGGTCCATAAA-GTAATGCTTCATATATCAGCAGCTTTTTCTCGCTGTAGTAACATGTAATCTGGTT- i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I a score=189329.000000 s hg38.chr22_GL383582v2_alt 109729 19 + 162811 TTTCACCAC-------ATT-GTCAG-TA s panTro5.chr22 28889642 19 + 37823149 TTTCACCAC-------ATT-GTCAG-TA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164230 19 + 50109623 TTTCACCAC-------ATT-GTCAG-TA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187078 19 + 4464012 TTTTACCAC-------ATT-GTCAG-TA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682832 19 - 115148730 TTTCACCAC-------ATT-GTCAG-TA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298051 19 + 92844088 TTTCACCAC-------GTT-GTCAG-TA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644404 19 - 96509753 TTTCACCAC-------GTT-GTCAG-TA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139557 19 - 13098629 TTTCACCAC-------ATT-GTCAG-TA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101157 19 - 4483953 TTTCACCAC-------ATT-GTCAG-TA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731794 19 + 33263144 TTTCACCAC-------ATT-GTCAG-TA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012488 19 - 14338769 TTTCACCAC-------ATT-GTCAG-TA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950774 15 + 1946073 TTTCACCAC-------ATT-----G-TA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977842 19 - 2117846 TTCCACCAC-------ATT-GTCAA-TA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888694 19 - 16357246 TTCCACTAC-------ATT-GTCAA-TA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1374360 19 - 1807191 TTCCACCAC-------ATT-ATCAA-TA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 52443 19 + 5963231 TTCTACCAC-------ATT-GTCAA-TA i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82840721 27 + 104043685 TCCTAATACTATATATACT-GTGAACTA i mm10.chr15 C 0 C 0 s canFam3.chr10 46122198 19 - 69331447 TTCCACTGT-------GTT-GTCAA-TA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 103037 16 + 1056298 ----ATTAT-------CTTCGTCAA-TA i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5743348 158 + 108171978 I a score=182544.000000 s hg38.chr22_GL383582v2_alt 109748 14 + 162811 TCTTGGGA-AAATTA s panTro5.chr22 28889661 14 + 37823149 TCTTGGGA-AAATTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164249 14 + 50109623 TCTTGGGA-AAATTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187097 14 + 4464012 TCTTGGGA-AAATTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682851 14 - 115148730 TCTTGGGA-AAATTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298070 14 + 92844088 TCTTGGGA-GAATTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644423 14 - 96509753 TCTTGGGA-AAATTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139576 14 - 13098629 TCTTGGGA-AAATTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101176 14 - 4483953 TCTTGGGA-AAATTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731813 14 + 33263144 TCTTGGGA-AAATTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012507 14 - 14338769 TCTTGGGA-AAATTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950789 14 + 1946073 TCTTGGGA-AAATTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977861 14 - 2117846 TCTTGGGA-AAATTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888713 14 - 16357246 TCTTGGGA-AAATTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1374379 14 - 1807191 TCTTGGGA-AAATTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 52462 14 + 5963231 TCTTGGGA-AAATTA i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82840748 14 + 104043685 TCTTGAGA-AAGTTA i mm10.chr15 C 0 I 419 s dasNov3.JH570235 103053 15 + 1056298 TCTTGAAATAAATTA i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46122217 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5743348 158 + 108171978 I a score=165419.000000 s hg38.chr22_GL383582v2_alt 109762 18 + 162811 TTTTAAAAGTCTAAACAg-- s panTro5.chr22 28889675 18 + 37823149 TTTTAAAAGTCTAAACAg-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164263 18 + 50109623 TTTTAAAAGTCTAAACAg-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187111 18 + 4464012 TTTTAAAAGTCTAAACAg-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682865 18 - 115148730 TTTTAAAAGTCTAAGCAg-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298084 18 + 92844088 TTTTAAAAGCCTAAACAg-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644437 18 - 96509753 TTTTAAAAGCCTAAACAg-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139590 18 - 13098629 TTTTAAAAGCCTAAACAg-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101190 18 - 4483953 TTTTAAAAGCCTAAACAg-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731827 18 + 33263144 TTTTAAAAGCCTACACAg-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012521 18 - 14338769 TTTTAAAAGCCTAAACAg-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950803 18 + 1946073 TTTTAAAAGCCTAAACAg-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977875 18 - 2117846 TTTCAAAAGCCTAAAAAg-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888727 18 - 16357246 TTTTAAAAGCCTAAAAAg-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1374393 18 - 1807191 TTTTAAAAGCCTAAAAag-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 52476 17 + 5963231 TTTTAAAAGCCTAAAAA--- i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 103068 18 + 1056298 --CTAGGAAACCAAAAACAA i dasNov3.JH570235 C 0 I 335 e mm10.chr15 82840762 419 + 104043685 I e canFam3.chr10 46122217 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5743348 158 + 108171978 I a score=186969.000000 s hg38.chr22_GL383582v2_alt 109780 18 + 162811 gccaggtgtggtggctca s panTro5.chr22 28889693 18 + 37823149 gccaggtgtggtggctca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164281 18 + 50109623 gccaggtgtggtggctca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187129 18 + 4464012 gccaggtgtggtggctca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682883 18 - 115148730 gccaggtatggtggctca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298102 18 + 92844088 gccaagtgtggtggctca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644455 18 - 96509753 gccaagtgtggtggctca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139608 18 - 13098629 gccaagtgtggtggctca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101208 18 - 4483953 gccaagtgtggtggctca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731845 18 + 33263144 gccaagtgtggtggctca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012539 18 - 14338769 gccaagtgtggtggctca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950821 18 + 1946073 gccaagtgtggtggctca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977893 18 - 2117846 gccagacgtggtggctca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888745 18 - 16357246 gccagacgtggtggctca i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1374411 18 - 1807191 gccagacgtggtggctca i cebCap1.NW_016107750v1 C 0 I 238 s aotNan1.NW_018512383v1 52493 18 + 5963231 gccagacgtggtggctca i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82840762 419 + 104043685 I e dasNov3.JH570235 103086 335 + 1056298 I e canFam3.chr10 46122217 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5743348 158 + 108171978 I a score=385713.000000 s hg38.chr22_GL383582v2_alt 109798 45 + 162811 ggcctgtaatcccgacactttgggaggccaaggcaagtggatcac s panTro5.chr22 28889711 45 + 37823149 ggcctgtaatcccgacactttgggaggccaaggcaggtggatcac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164299 45 + 50109623 ggcctgtaatcccgacactttgggaggccaaggcaggtggatcac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187147 45 + 4464012 ggcctgtaatcccgacattttgggaggccaaggcaggtggatcac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682901 45 - 115148730 ggcctgtaaccctgacactttgggaggccaaggcagatggatcac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298120 45 + 92844088 ggcctgtaatcccaacactttgggaggccaaggcaggtggatcac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644473 45 - 96509753 ggcctgtaatcccaacactttgggaggccaaggcaggtggatcac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139626 45 - 13098629 ggcctgtaatcccaacactttgggaggccaaggcaggtggatcac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101226 45 - 4483953 ggcctgtaatcccaacactttgggaggccaaggcaggtggatcac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731863 45 + 33263144 ggcctgtaatcccaagactttgggaggccaaggcaggtggatcac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012557 45 - 14338769 ggcctgtaatcccaacactttgggaggccaaggcaggtggatcac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950839 45 + 1946073 ggcctgtaatcccaacactttgggaggccaaggcaggtggatcac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977911 45 - 2117846 cacctgcaatcccagcactctgggaggccgaggtgggtgaattac i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888763 45 - 16357246 catctgtaatctcagcactctgggaggccgaggtgggtggattat i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 52511 45 + 5963231 caccggcaatcccaacactctgggaggccgaggtgggtggatcac i aotNan1.NW_018512383v1 C 0 I 237 e mm10.chr15 82840762 419 + 104043685 I e dasNov3.JH570235 103086 335 + 1056298 I e canFam3.chr10 46122217 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5743348 158 + 108171978 I e cebCap1.NW_016107750v1 1374429 238 - 1807191 I a score=238588.000000 s hg38.chr22_GL383582v2_alt 109843 34 + 162811 ctgaggtcagcagttcgagaccagactggctaac s panTro5.chr22 28889756 34 + 37823149 ctgaggtcagcagttcgagaccagactggctaac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164344 34 + 50109623 ctgaggtcagcagttcgagaccagactggctaac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187192 34 + 4464012 ctgaggtcagcagttcgagaccagactggctaac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682946 34 - 115148730 ctgaggtcaggagtttgagaccagatgggctaac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298165 34 + 92844088 ctgaggtcaggagttcgagaccagactggcaaac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644518 34 - 96509753 ctgaggtcaggagttcgagaccagactggcaaac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7139671 34 - 13098629 ctgaggtcaggagttcgagaccagactggcaaac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101271 34 - 4483953 ctgaggtcaggagttcgagaccagactggcaaac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731908 34 + 33263144 ctgaggtcaggagttcgagaccagactggctaac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012602 34 - 14338769 ctgaggtcaggagttcgagaccagactggcaaac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 950884 34 + 1946073 ctgaggtcaggagtttgagaccagactggctaat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977956 32 - 2117846 --gaggtcaggatttcaagaccagcatggtcaac i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888808 32 - 16357246 --gaggtaaggacttcgagaccagcatggtcaac i saiBol1.JH378157 C 0 C 0 e aotNan1.NW_018512383v1 52556 237 + 5963231 I e mm10.chr15 82840762 419 + 104043685 I e dasNov3.JH570235 103086 335 + 1056298 I e canFam3.chr10 46122217 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5743348 158 + 108171978 I e cebCap1.NW_016107750v1 1374429 238 - 1807191 I a score=119593.000000 s hg38.chr22_GL383582v2_alt 109877 25 + 162811 atggc-aaaaccccatctctacaaaa s panTro5.chr22 28889790 25 + 37823149 atggc-aaaaccccatctctaccaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164378 22 + 50109623 atggcaaaaaccccatctctac---- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187226 19 + 4464012 atggc-aaaaccccatctct------ i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106682980 21 - 115148730 acggc-aaaaccccatctctac---- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298199 24 + 92844088 atggc-aaaaccccatctctaaaaa- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644552 25 - 96509753 atggc-aaaaccccatctctaaaaaa i macFas5.chr10 C 0 I 2 s macNem1.NW_012012688v1 7139705 25 - 13098629 atggc-aaaaccccatctctaaaaaa i macNem1.NW_012012688v1 C 0 T 2482 s cerAty1.NW_011999588v1 4101305 21 - 4483953 atggc-aaaaccccatctctaa---- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731942 20 + 33263144 atggc-aaaaccccatctcta----- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012636 25 - 14338769 atggc-aaaaccccatctctaaaaaa i manLeu1.NW_012102031v1 C 0 I 5 s colAng1.NW_012115588v1 950918 25 + 1946073 atggc-aaaaccccctctctaaaaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1977988 21 - 2117846 atggt-gaaatcccatctctac---- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888840 21 - 16357246 atggt-gaaatcccatctctac---- i saiBol1.JH378157 C 0 C 0 s canFam3.chr10 46122217 13 - 69331447 ATGTC-AATGTCCT------------ i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 52556 237 + 5963231 I e mm10.chr15 82840762 419 + 104043685 I e dasNov3.JH570235 103086 335 + 1056298 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5743348 158 + 108171978 I e cebCap1.NW_016107750v1 1374429 238 - 1807191 I a score=304092.000000 s hg38.chr22_GL383582v2_alt 109902 87 + 162811 aaaaaaaaaaaaaaaaaaaaaaaaaaaattagccagatgtg------------------------------------gtgacaggagaatcgcttgaacctgggaggcagaggttgcagtgag s panTro5.chr22 28889815 87 + 37823149 aaaaaaaaaaaaaaaaaaaaaaaaaaaattagccagatgtg------------------------------------gtgacaggagaatcgcttgaacctgggaggcagaggttgcagtgag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164400 77 + 50109623 ----------aacaaaaaaaaaaaaaaattagccagatgtg------------------------------------gtgacaggagaatcgcttgaacctgggaggcagaggttgcagtgag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187245 85 + 4464012 --caaaaaaaaaaaaaaaaaaaaaaaaaattgccagatgcc------------------------------------gtgacaggagaatcgcttgaacctgggaggcagaggttgcagtgag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683001 53 - 115148730 --------aaaaaaaaaaaaaaaaaaaaaaagccagatgtg------------------------------------gtgacaggagaatcgtttga-------------------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298223 83 + 92844088 aaaaaaaaagaaaagaaaaagaaaaaaattagccagatgca------------------------------------gaggcaggagaattgcttgaccctgggaggcagaggttgcag---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644579 83 - 96509753 aaaaaaaagaaaaagaaaaagaaaaaaattagccagatgca------------------------------------gaggcaggagaattgcttgaccctgggaggcagaggttgcag---- i macFas5.chr10 I 2 C 0 s cerAty1.NW_011999588v1 4101326 83 - 4483953 aaaaaaaaaaaaaagaaaaagaaaaaaattagccagatgca------------------------------------gaggcaggagaattgcttgaccctgggaggcaaaggttgcag---- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24731962 62 + 33263144 ---------------------aaaaaattaagccagatgtg------------------------------------gaggcaggagaattgcttgaacctgggaggcagaggttgcag---- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012666 83 - 14338769 agaaaaagaaaaaagaaaaagaaaaaaattagccagatgca------------------------------------gaggcaggagaattgcttgaccctgggaggcagaggttgcag---- i manLeu1.NW_012102031v1 I 5 C 0 s colAng1.NW_012115588v1 950943 70 + 1946073 -----------------aaaaaaaaaaaaaagccagatggg------------------------------------gaggcagaagaattgcttgaacctgggaggcagaggttgcagtgag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1978009 109 - 2117846 --------------taaaaatagaaaaattagccaggcgtggtgggcacacctgtaggcctagctactcgggaggctgaggcaggagagttgcttgaacccgggaggtggaggttgcagtgag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888861 109 - 16357246 --------------taaaaatacaaaaattagccaggcgtggtgggcacacctgtagtcctagctactcgggaggctgaggcaagagagttgcttgaactcgggaggtggaggttgcagtgag i saiBol1.JH378157 C 0 C 0 s canFam3.chr10 46122230 32 - 69331447 --------GAAAAATGAGAAAACCAAAAATAGCCA------------------------------------------ATGAC----------------------------------------- i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 52556 237 + 5963231 I e mm10.chr15 82840762 419 + 104043685 I e dasNov3.JH570235 103086 335 + 1056298 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5743348 158 + 108171978 I e cebCap1.NW_016107750v1 1374429 238 - 1807191 I e macNem1.NW_012012688v1 7139730 2482 - 13098629 T a score=146148.000000 s hg38.chr22_GL383582v2_alt 109989 51 + 162811 ctgggatcgcaccactgcactccagactgggca---agagt--gactctgtcc------aaa s panTro5.chr22 28889902 51 + 37823149 ctgggatcgcaccactgcactccagactgggca---agagt--gactctgtcc------aaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164477 51 + 50109623 ctgggatcgcaccactgcactccagactgggca---agagt--gactctgtcc------aaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187330 53 + 4464012 ctgggatcgcaccactgcactacagactgggca-acagagt--gactctgtcc------aaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683054 43 - 115148730 ----------tccactgtactccagactgggca-acagagt--gactctgtcc------aaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298306 50 + 92844088 -tgggattgcaccactgcactccagactgg--aaacagagtgagactctgtcc--------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644662 52 - 96509753 -tgggattgcaccactgcactccagactgggcaaacagagtgagactctgtcc--------- i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4101409 54 - 4483953 -tgggattgcaccactgcactccagactgggcaaacagagtgagactctgtccaa------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732024 53 + 33263144 -tgggattgcaccactgcactccagactgggcaaacagagtgagactctgtcc--a------ i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012749 53 - 14338769 -tgggattgcatcactgcactccagactgggcaaacagagtgagactctgtcc--a------ i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951013 56 + 1946073 ctgggatcacaccactgcactccagtcagggcaaacagagtgagactctgtcc---aaa--- i colAng1.NW_012115588v1 C 0 I 4 s calJac3.chrUn_GL286373 1978118 50 - 2117846 ccgagattgtgccactgcactccagtctgggtg-a---agt--gataatgtct------caa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8888970 53 - 16357246 ccgagattgtgcaactgcactccagtctgggtg-acagagt--gatactctca------aaa i saiBol1.JH378157 C 0 C 0 s canFam3.chr10 46122262 11 - 69331447 ---------CTCTTCTGTGC------------------------------------------ i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 103421 29 + 1056298 cagggattgaaccagggtcctcccatatg--------------------------------- i dasNov3.JH570235 I 335 C 0 e aotNan1.NW_018512383v1 52556 237 + 5963231 I e mm10.chr15 82840762 419 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5743348 158 + 108171978 I e cebCap1.NW_016107750v1 1374429 238 - 1807191 I e macNem1.NW_012012688v1 7139730 2482 - 13098629 T a score=65762.000000 s hg38.chr22_GL383582v2_alt 110040 10 + 162811 aaaaaaaaaa s panTro5.chr22 28889953 10 + 37823149 aaaaaaaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164528 7 + 50109623 aaaaaaa--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187383 10 + 4464012 aaaaaaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683097 10 - 115148730 aaaaaaaaaa i nomLeu3.chr7b C 0 I 4 s rheMac8.chr10 84298356 10 + 92844088 aaaaaaaaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644714 10 - 96509753 aaaaaaaaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137248 10 - 13098629 AAAAAAAAAA i macNem1.NW_012012688v1 T 2482 C 0 s cerAty1.NW_011999588v1 4101463 10 - 4483953 aaaaaaaaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732077 10 + 33263144 aaaaagaaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012802 10 - 14338769 aaaaaaaaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951073 10 + 1946073 aaaaaaaaaG i colAng1.NW_012115588v1 I 4 C 0 s calJac3.chrUn_GL286373 1978168 10 - 2117846 aaaaagaaaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8889023 10 - 16357246 aaaaaaaaaa i saiBol1.JH378157 C 0 C 0 s dasNov3.JH570235 103450 9 + 1056298 aaagatgga- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 52556 237 + 5963231 I e mm10.chr15 82840762 419 + 104043685 I e canFam3.chr10 46122273 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5743348 158 + 108171978 I e cebCap1.NW_016107750v1 1374429 238 - 1807191 I a score=6006.000000 s hg38.chr22_GL383582v2_alt 110050 1 + 162811 a s gorGor5.CYUI01015375v1 3187393 1 + 4464012 a i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683111 1 - 115148730 a i nomLeu3.chr7b I 4 C 0 s rheMac8.chr10 84298366 1 + 92844088 a i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644724 1 - 96509753 a i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137258 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101473 1 - 4483953 a i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732087 1 + 33263144 a i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012812 1 - 14338769 a i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951083 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1978178 1 - 2117846 a i calJac3.chrUn_GL286373 C 0 I 9 s dasNov3.JH570235 103459 1 + 1056298 a i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 52556 237 + 5963231 I e mm10.chr15 82840762 419 + 104043685 I e canFam3.chr10 46122273 0 - 69331447 C e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5743348 158 + 108171978 I e cebCap1.NW_016107750v1 1374429 238 - 1807191 I e saiBol1.JH378157 8889033 0 - 16357246 C e panPan2.chr22 41164535 0 + 50109623 C e panTro5.chr22 28889963 0 + 37823149 C a score=580542.000000 s hg38.chr22_GL383582v2_alt 110051 110 + 162811 GCCCAAACA-GCAAGTTA-----TCCTTTCTGTTTCCCCTTCCAATTACATTTTAGG-AATAATTATGATGATAGCTTAAA-TTT-TTTTGGTATCTTTTTGGGATTC-TC----T-----GGG-------TTTTT s panTro5.chr22 28889963 110 + 37823149 GCCCAAACA-GCAAGTTA-----TCCTTTCTGTTTCCCCTTCCAATTACATTTTAGG-AATAATTATAATGATAGCTTAAA-TTT-TCTTGGTATCTTTTTGGGATTC-TC----T-----GGG-------TTTTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164535 110 + 50109623 GCCCAAACA-GCAAGTTA-----TCCTTTCTGTTTCCCCTTCCAATTACATTTTAGG-AATAATTATAATGATAGCTTAAA-TTT-TCTTGGTATCTTTTTGGGATTC-TC----T-----GGG-------TTTTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187394 117 + 4464012 GCCCAAACA-GCAAGTTA-----TCCTTTCTGTTTCCCCTTCCAATTACATTTTAGG-AATAATTATAATGATAGCTTAAA-TTT-TTTTGGTATCTTTTTGGGATTC-TC----C-----AGGTCtttttttttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683112 115 - 115148730 GCCCAAACA-GCAAGTTATCCTTTCCTTTCTGTTTCCCCTTCCAATTACATTTTAGG-AATAATTATAATGATAGCTTAAA-TTT-TTCTGATATCTTTTTGGGATTC-TC----T-----GGG-------TTTTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298367 107 + 92844088 GCCCAAACA-GCAAGCTA-----TCCTTTCTGTTTCCCCTTCCAATTGCATTTTAGG-AATAATTATAATGACAGCTTAAA-TTT-TTTTGACAACTTTTTGGGATTC-TC----T---------------TTTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644725 111 - 96509753 GCCCAAACA-GCAAGCTA-----TCCTTTCTGTTTCCCCTTCCAATTGCATTTTAGG-AATAATTATAATGACAGCTTAAA-TTT-TTTTGACATCTTTTTGGGATTC-TCTCTTT---------------TTTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137259 107 - 13098629 GCCCAAACA-GCAAGCTA-----TCCTTTCTGTTTCCCCTTCCAATTGCATTTTAGG-AATAATTATAATGACAGCTTAAA-TTT-TTTTGACATCTTTTTGGGATTC-TC----T---------------TTTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101474 107 - 4483953 GCCCCAACA-GCAAGCTA-----TCCTTTCGGTTTCCCCTTCCAATTGCATTTTAGG-AATAATTATAATGACAGCTTAAA-TTTGTTTTGACATCTTTTTGGGATTC-TC--------------------TTTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732088 109 + 33263144 GCCCAAACA-GCAAGTTA-----TCCTTTCTGTTTCCCCTTCCAATTGTATTTTAGG-AATAATTATTATGACAGCTTAAA-TTT-TTTTGACATCTTTTTGGGAttcttt---tt---------------ttttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012813 109 - 14338769 GCCCCAACA-GCAAGCTA-----TCCTTTCTGTTTCCCCTTCCAGTTGCATTTTAGG-AATAATTATAATGACAGCTTAAATTTT-TTTTGACATCTTTTTGGGATTC-TC---TT---------------TTTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951084 103 + 1946073 GCCCAAACA-GCAAGTTA-----TCCTTTCTGTTTTCCCTTCCAATTGTATTTTAGG-AATAATTATAATGACAGCTTAAA--TT-TTTTGACATCTTTTTGGGATTC-TC----------------------TTT i colAng1.NW_012115588v1 C 0 C 0 s canFam3.chr10 46122273 92 - 69331447 -----------------------------CTTTTCCTGCTCCCAACCATATTATAGGCAATAATTGTAATGGTGGCTTAA--TGT-CTTTGATACCTTTTTAGAGTTC-TC----TACGTGGGA-------ATTTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 103460 106 + 1056298 gcccaattgcttgagcca-------catcccttccccccttc--atcttatTTTAAG-CA-----ATAATGACAGTTTAA--TTA-CTTTGATATCTGTTCAGGGTCC-TC----TGTGTGAGA-------TTTTT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 52556 237 + 5963231 I e mm10.chr15 82840762 419 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5106793 509 - 6317780 I e micMur3.chr7 5743348 158 + 108171978 I e cebCap1.NW_016107750v1 1374429 238 - 1807191 I e saiBol1.JH378157 8889033 0 - 16357246 C e calJac3.chrUn_GL286373 1978179 9 - 2117846 I a score=53288.000000 s hg38.chr22_GL383582v2_alt 110161 10 + 162811 TCTTTTTTAT s panTro5.chr22 28890073 10 + 37823149 TCTTTTTTAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164645 10 + 50109623 TCTTTTTCAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187511 10 + 4464012 ttttttttAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683227 10 - 115148730 TCTTTTTTAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298474 10 + 92844088 TTTTTTTAAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644836 10 - 96509753 TTTTTTTAAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137366 10 - 13098629 TTTTTTAAAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101581 10 - 4483953 TTTTTTTAAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732197 10 + 33263144 tttttttAAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012922 10 - 14338769 TTTTTTAAAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951187 10 + 1946073 TTTTTTTTAT i colAng1.NW_012115588v1 C 0 C 0 s proCoq1.NW_012136747v1 5107302 10 - 6317780 TCTTTTTAAA i proCoq1.NW_012136747v1 I 509 C 0 s canFam3.chr10 46122365 9 - 69331447 TTTTTTTTA- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 103566 9 + 1056298 TTTTCTTTA- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 52556 237 + 5963231 I e mm10.chr15 82840762 419 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5743348 158 + 108171978 I e cebCap1.NW_016107750v1 1374429 238 - 1807191 I e saiBol1.JH378157 8889033 0 - 16357246 C e calJac3.chrUn_GL286373 1978179 9 - 2117846 I a score=41561.000000 s hg38.chr22_GL383582v2_alt 110171 5 + 162811 AAACA s panTro5.chr22 28890083 5 + 37823149 AAACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164655 5 + 50109623 AAACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187521 5 + 4464012 AAACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683237 5 - 115148730 AAACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298484 5 + 92844088 AAACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644846 5 - 96509753 AAACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137376 5 - 13098629 AAACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101591 5 - 4483953 AAACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732207 5 + 33263144 AAACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012932 5 - 14338769 AAACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951197 5 + 1946073 AAACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1978188 5 - 2117846 aaaaa i calJac3.chrUn_GL286373 I 9 C 0 s proCoq1.NW_012136747v1 5107312 5 - 6317780 AAACA i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46122374 1 - 69331447 ----A i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 103575 3 + 1056298 --ACA i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 52556 237 + 5963231 I e mm10.chr15 82840762 419 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5743348 158 + 108171978 I e cebCap1.NW_016107750v1 1374429 238 - 1807191 I e saiBol1.JH378157 8889033 0 - 16357246 C a score=9555.000000 s hg38.chr22_GL383582v2_alt 110176 1 + 162811 T s panTro5.chr22 28890088 1 + 37823149 T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164660 1 + 50109623 T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187526 1 + 4464012 T i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683242 1 - 115148730 T i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298489 1 + 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644851 1 - 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137381 1 - 13098629 T i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101596 1 - 4483953 T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732212 1 + 33263144 T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012937 1 - 14338769 T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951202 1 + 1946073 T i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5743506 1 + 108171978 T i micMur3.chr7 I 158 C 0 s proCoq1.NW_012136747v1 5107317 1 - 6317780 T i proCoq1.NW_012136747v1 C 0 C 0 s dasNov3.JH570235 103578 1 + 1056298 T i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 52556 237 + 5963231 I e mm10.chr15 82840762 419 + 104043685 I e canFam3.chr10 46122375 1 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e cebCap1.NW_016107750v1 1374429 238 - 1807191 I e saiBol1.JH378157 8889033 0 - 16357246 C e calJac3.chrUn_GL286373 1978193 0 - 2117846 C a score=459790.000000 s hg38.chr22_GL383582v2_alt 110177 30 + 162811 GACACAGACCTCATGATTTCCTATTTTTCT s panTro5.chr22 28890089 30 + 37823149 GACACAGACCTCATGATTTCCTATTTTTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164661 30 + 50109623 GACACAGACCTCATGATTTCCTATTTTTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187527 30 + 4464012 GACACAGACCTCATGATTTCCTATTTTTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683243 28 - 115148730 G--ACAGACCTCATGATTTCCTATTTTTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298490 30 + 92844088 AACACAGACCTCATGATTTCCTATTTTTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644852 30 - 96509753 AACACAGACCTCATGATTTCCTATTTTTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137382 30 - 13098629 AACACAGACCTCATGATTTCCTATTTTTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101597 30 - 4483953 AACACAGACCTCATGATTTCCTATTTTTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732213 30 + 33263144 AACACAGACCTCACGATTTCCTATTTTTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012938 30 - 14338769 AACACAGACCTCATGATTTCCTATTTTTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951203 30 + 1946073 AACACAGACCTCATGATTTCCTATTTTTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1978193 30 - 2117846 gacaCAGACCTCATGATTTCCTATTTTTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8889033 30 - 16357246 GACACAGACCTCATGGTTTCCTATTTTTCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1374667 30 - 1807191 GACACAGACCTCATGATTTCCTATTTTTCT i cebCap1.NW_016107750v1 I 238 C 0 s aotNan1.NW_018512383v1 52793 30 + 5963231 GACACAGACCTCATGATTTCCTATTTTTCT i aotNan1.NW_018512383v1 I 237 C 0 s micMur3.chr7 5743507 30 + 108171978 GACACAGACTTCATGATTTCCTATTTTTCT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5107318 30 - 6317780 GACACAGACGTCATGATTTCCTATTTTTCT i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46122376 25 - 69331447 GACACAGATCTCATGATTTCCTATT----- i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 103579 30 + 1056298 GACAAAGACCTCAAAATTTCCTATTTGTAC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82840762 419 + 104043685 I e otoGar3.GL873526 36316700 270 - 42659167 I a score=317130.000000 s hg38.chr22_GL383582v2_alt 110207 25 + 162811 CTCCACTTTCTTTCAA---TTTGGATTT s panTro5.chr22 28890119 25 + 37823149 CTCCACTTTCTTTCAA---TTTGGATTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164691 25 + 50109623 CTCCACTTTCTTTCAA---TTTGGATTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187557 25 + 4464012 CTCCACTTTCTTTCAA---TTTGGATTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683271 25 - 115148730 CTCCACTTTCTTTCAA---TTTGGATTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298520 21 + 92844088 CTCCA----CTTTCAA---TTTGGACTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644882 21 - 96509753 CTCCA----CTTTCAA---TTTGGACTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137412 21 - 13098629 CTCCA----CTTTCAA---TTTGGACTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101627 25 - 4483953 CTCCACTTTCTTTCAA---TTTGGACTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732243 25 + 33263144 CTCCACTTTCTTTCAA---TTTGGACTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012968 25 - 14338769 CTCCACTTTCTTTCAA---TTTGGACTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951233 25 + 1946073 CTCCACTTTCTTTCAA---TTTGGACTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1978223 25 - 2117846 CTCCACTTTCTTTCAA---TGTGGATTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8889063 25 - 16357246 CTCCACTTCCTTTCAA---CGTGGATTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1374697 25 - 1807191 CTCCACTTTCTTTCAA---CGTGGATTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 52823 25 + 5963231 CTCCACTTTCTTTCAA---TGTGGATTT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5743537 25 + 108171978 CTCCATTTTCTTTCAA---TTTGGATTT i micMur3.chr7 C 0 I 397 s proCoq1.NW_012136747v1 5107348 25 - 6317780 CTTCATTTTCTTTCAA---TTTGGATTT i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82841181 28 + 104043685 CTCCCTTCTCTTGAAAGACTTCTAATTT i mm10.chr15 I 419 I 1 s canFam3.chr10 46122401 23 - 69331447 -TCCTCCTTCTTGCAA---CCTGGATT- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 103609 24 + 1056298 -CCCATTTTTTTGTGA---ATTGGATTA i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36316700 270 - 42659167 I a score=161868.000000 s hg38.chr22_GL383582v2_alt 110232 13 + 162811 AAAAATTTATCAG- s panTro5.chr22 28890144 13 + 37823149 AAAAATTTATCAG- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164716 13 + 50109623 AAAAATTTATCAG- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187582 13 + 4464012 AAAAATTTATCAG- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683296 13 - 115148730 AAAAACTTATCAG- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298541 13 + 92844088 AAAAATTTACCAG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644903 13 - 96509753 AAAAATTTACCAG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137433 13 - 13098629 AAAAATTTACCAG- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101652 13 - 4483953 AAAAATTTACCAG- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732268 13 + 33263144 AAAAATTTACCAG- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14012993 13 - 14338769 AAAAATTTACCAG- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951258 13 + 1946073 AAAAATTTACCAG- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1978248 13 - 2117846 AAAATTTTACCAG- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8889088 13 - 16357246 AAAATTTTACCAG- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1374722 13 - 1807191 AAAAATTTACCAG- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 52848 13 + 5963231 AAAAATTTATCAG- i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5107373 12 - 6317780 -AAAGTTTATCAG- i proCoq1.NW_012136747v1 C 0 I 48 s mm10.chr15 82841210 13 + 104043685 TAAAGTTTACTAT- i mm10.chr15 I 1 I 1 s canFam3.chr10 46122424 11 - 69331447 --AAGTTTCCTGG- i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 103633 13 + 1056298 -AAAATTTACTAAT i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5743562 397 + 108171978 I a score=505576.000000 s hg38.chr22_GL383582v2_alt 110245 44 + 162811 T----TTACATCTATTTG-AAAGGCTAAATAAAAAGCAAGCAG---TTATTT s panTro5.chr22 28890157 44 + 37823149 T----TTACATCTATTTG-AAAGGCTAAATAAAAAGCAAGCAG---TTATTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164729 44 + 50109623 T----TTACATCTATTTG-AAAGGCTAAATAAAAAGCAAGCAG---TTATTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187595 44 + 4464012 T----TTACATCTATTTG-AAAGGCTAAATAAAAAGCAAGCAG---TTATTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683309 44 - 115148730 T----TTACATCTATTTG-AAAGGCTAAATAAAAAGCAAGCAG---TTATTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298554 47 + 92844088 T----TTACATCTATTTG-AAAGGCTAAATAAAAAGCAAGCAGCTCTTATTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644916 47 - 96509753 T----TTACATCTATTTG-AAAGGCTAAATAAAAAGCAAGCAGCTCTTATTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137446 47 - 13098629 T----TTACATCTATTTG-AAAGGCTAAATAAAAAGCAAGCAGCTCTTATTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101665 47 - 4483953 T----TTACATCTATTTG-AAAGGCTAAATAAAAAGCAAGCAGCTCTTATTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732281 47 + 33263144 T----TTACATCTATTTG-AAAGGCTAAATAAAAAGCAAGCAGCTCTTATTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14013006 47 - 14338769 T----TTACATCTATTTG-AAAGGCTAAATAAAAAGCAAGCAGCTCTTATTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951271 47 + 1946073 T----TTACATCTATTTG-AAAGGCTAAATAAAAAGCAAGCAGCTCTCATTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1978261 51 - 2117846 TTTACTTACATCTATTTGAAAAGGCTAAA-AGAAAGCAACCAGTTTTTATTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8889101 46 - 16357246 T----TTATATCTATTTG-AAAGGCTAAA-AGCAAGCAACCAGTTTTTACTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1374735 46 - 1807191 T----TTACATCTATTTG-AAAGGCTAAA-AGAAAGCAACCAGTTTTTATTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 52861 46 + 5963231 T----TTATATCTATTTG-AAAGGCTAAA-AGAAAACAACCAGTTTTTATTT i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82841224 43 + 104043685 T----TCACATTTATTTG-GAAAGTTAAGTAAA----AATCAGTCCTTATTT i mm10.chr15 I 1 I 1 s canFam3.chr10 46122436 47 - 69331447 T----TTATATTTATGCG-AAAAGCAAAATAAAAACCAGCCAGTCCTTATGA i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 103646 46 + 1056298 T----TTACATCTATTTG-AAAAGCTGGCTAAAAACCAATTAG-TCCTATTT i dasNov3.JH570235 C 0 I 2 e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5107385 48 - 6317780 I e micMur3.chr7 5743562 397 + 108171978 I a score=936644.000000 s hg38.chr22_GL383582v2_alt 110289 77 + 162811 AAAATGCTGTATTAGA---ATC--TAGTGTTGACTTATCTAAACATGTATATTAGGCTGAACTGCCTTCATATCTAATATTT-- s panTro5.chr22 28890201 77 + 37823149 AAAATGCTGTATTAGA---ATC--TAGTGTTGACTTATCTAAACATGTATATTAGGCTGAACTGCCTTCATATCTAATATTT-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164773 77 + 50109623 AAAATGCTGTATTAGA---ATC--TAGTGTTGACTTAtctaaacatgtatattaggctgaactgccttcatatctaatattt-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187639 77 + 4464012 ACAATGCTATATTAGA---ATC--TAGTGTTGACTTATCTAAACATGTATATTAGGCTGAACTGCCTTCATATCTAATATTT-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683353 77 - 115148730 AAAATGCTGTATTAGA---ATC--TAGTGTTGACTTACctaaacatgtatattaggctgaactgccttcataactaatattt-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298601 71 + 92844088 AAAACGCTGTATTAGA---ATC--TAGTGTTGACTGATCTAAAC------ATTAGGCTGAACTGCCTTCATATCTAATATTT-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87644963 71 - 96509753 AAAACGCTGTATTAGA---ATC--TAGTGTTGACTGATCTAAAC------ATTAGGCTGAACTGCCTTCATATCTAATATTT-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137493 71 - 13098629 AAAACGCTGTATTAGA---ATC--TAGTGTTGACTGATCTAAAC------ATTAGGCTGAACTGCCTTCATATCTAATATTT-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101712 71 - 4483953 AAAACGCTGTATTAGA---ATC--TAGTGTTGACTGATCTAAAC------ATTAGGCTGAACTGCCTTCACATCTAATATTT-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732328 71 + 33263144 AAAATGCTGTATTAGA---ATG--TAGTGTTGACTGATCTAAAC------ATTAGGCTGAACTGCCTTCATATCTAATATTT-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14013053 71 - 14338769 AAAACGCTGTATTAGA---ATC--TAGTGTTGACTGATCTAAAC------ATTAGGCTGAACTGCCTTCATATCTAGTATTT-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951318 71 + 1946073 AAAATGCTGTATTAGA---ATC--TAGTGTTGACTGATCTAAAC------ATTAGGCTGAACTGCCTTCATATCTAATATTT-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1978312 75 - 2117846 AAAATGCTATACTAGA---ATC--TAGTGTTGACTGATCTCAGCATGTATATTGGGCTGAACTGTCTTCCTATCTAGTAT---- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8889147 77 - 16357246 AAAATGCTATACTAGA---ATC--TAGTGTTGActgatctcaacatgtatattgggctgaactgtcttcgtatctagtattt-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1374781 77 - 1807191 AAAATACTATAGTAGA---ATC--TAGTGTTGACTGATCTCAACATGTATATTGGGCTGAACTGTCTTCGTATCAAGTATTT-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 52907 77 + 5963231 AAAATGCTATACTAGA---ATC--TAGTGTTGACTGATCTCAGCATGTATATTGGGTTGAAGTGTCTTCGTATCTAGTATTT-- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5743959 76 + 108171978 AAAATACTATACTAGA---ATC--TATTGTTGACTGA-CTAAACATGTGTATTAGACTGAACTGCCTTCACACCTAATATTT-- i micMur3.chr7 I 397 I 490 s proCoq1.NW_012136747v1 5107433 76 - 6317780 AAAATACTGTGCTAGA---ATC--TCGTGTTGACTGA-CTGAACACGTACATTAGACTGAACTGCCTTCACACCTAATATTT-- i proCoq1.NW_012136747v1 I 48 C 0 s mm10.chr15 82841268 73 + 104043685 AAAATTCTATATTAAA---GCC--TACTGCTGATTGT----AACAGGTATTTGGGGCTGAACTACTTCCACATCAAGTTTTT-- i mm10.chr15 I 1 C 0 s canFam3.chr10 46122483 79 - 69331447 AAAGTACCATACTGGAGACACA--GAGTGCTGA-TGACTTGAACATGTGGATGTGGCTAGGCTGTTCTCAGATCTAGTGGTT-- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 103694 71 + 1056298 AAACTGCTGTACTAGA---GACCTCACTGCTGGCTGATCTGCAT----------GGCTGGATGGCTTTCACATCTAGGATATCC i dasNov3.JH570235 I 2 C 0 e otoGar3.GL873526 36316700 270 - 42659167 I a score=38751.000000 s hg38.chr22_GL383582v2_alt 110366 4 + 162811 -TCTT s panTro5.chr22 28890278 4 + 37823149 -TCTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164850 4 + 50109623 -tctt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187716 4 + 4464012 -TCTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683430 4 - 115148730 -tctt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298672 4 + 92844088 -TCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87645034 4 - 96509753 -TCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137564 4 - 13098629 -TCTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101783 4 - 4483953 -TCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732399 4 + 33263144 -TCTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14013124 4 - 14338769 -TCTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951389 4 + 1946073 -TATT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1978387 2 - 2117846 ---TT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8889224 4 - 16357246 -cctt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1374858 4 - 1807191 -CCTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 52984 4 + 5963231 -CCTT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5107509 4 - 6317780 -TCTT i proCoq1.NW_012136747v1 C 0 I 477 s mm10.chr15 82841341 4 + 104043685 -TCTT i mm10.chr15 C 0 I 2 s canFam3.chr10 46122562 4 - 69331447 -TCTT i canFam3.chr10 C 0 I 2 s dasNov3.JH570235 103765 4 + 1056298 TTCT- i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36316700 270 - 42659167 I e micMur3.chr7 5744035 490 + 108171978 I a score=2002742.000000 s hg38.chr22_GL383582v2_alt 110370 192 + 162811 GTCTAATACATATTAAACGCAAACCTAAA-----------TTTCTTTTCTTCAA--CCCTTCTTTCTGTTATTGG-TAT-GTTGATGA-CCCCTCACCTCG-C-----------CCACTGACttgctg-gagctagaaacct--caacttcatccttgacctc--tgcctcctcactttcccaaacctgctgcatctagtcagtgtttaaaatctatcaa-cttta s panTro5.chr22 28890282 192 + 37823149 GTCTAATACATATTAAACGCAAACCTAAA-----------TTTCTTTTCTTCAA--CCCTTCTTTCTGTTATTGG-TAT-GTTGATGA-CCCCTCACCTCG-C-----------CCACTGACttgctg-gagctagaaacct--caacttcatccttgacctc--tgcctcctcactttcccaaacctgctgcatctagtcagtgtttaaaatctatcaa-cttta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41164854 192 + 50109623 gtctaatacatattaaacgcaaacctaaa-----------tttcttttcttcaa--cccttctttctgttattgg-tat-gttgatga-cccctcacctcg-c-----------ccactgacttgctg-gagctagaaacct--caacttcatccttgacctc--tgcctcctcactttcccaaacctgctgcatctagtcagtgtttaaaatctatcaa-cttta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187720 193 + 4464012 GTCTAATACATATTAAACGCAAACCTAAA-----------TTTCTTTTCTTCAA--CCCTTCTTTCTGTTATTGGTTAT-GTTGATGA-CCCCTCACCTCG-C-----------CCACTGACttgctg-gagctagaaacct--caacttcatccttgacctc--tgcctcctcactttcccaaacctgccgcatctagtcagtgtttaaaatctatcaa-cttta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683434 193 - 115148730 gtctaatacatattaaatgcaaacctaaa-----------tttcttttcttcaa--cccttctttctgctattgg-tatagttgatga-cccctcaccccg-c-----------ccactgacttgctg-gagctagaaacct--caacttcatccttgacctc--tgcctcctcactttcccaaagctgccacatctagtcagtgtttaaaatctatcaa-cttta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298676 189 + 92844088 GTCTAGTACATATTAAATGCAAACCTAAA-----------TTTCTTTTCTTCAA--CCCTTCTTTCTGTTATTGG-TAT-GTTGATGA-CCCCTCacccca-c-----------ccactgacttgctg-gagctagaaacct--caacttcatccttgacctc--tg---cctcactttcccaaacctgctacatctagtcagtgtttaaaatctatcaa-cttta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87645038 189 - 96509753 GTCTAGTACATATTAAATGCAAACCTAAA-----------TTTCTTTTCTTCAA--CCCTTCTTTCTGTTATTGG-TAT-GTTGATGA-CCCCTCacccca-c-----------ccactgacttgctg-gagctagaaacct--caacttcatccttgacctc--tg---cctcactttcccaaacctgctacatctagtcagtgtttaaaatctatcaa-cttta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137568 189 - 13098629 Gtctagaacatattaaatgcaaacctaaa-----------tttcttttcttcaa--cccttctttctgttattgg-tat-gttgatga-cccctcacccca-c-----------ccactgacttgctg-gagctagaaacct--caacttcatccttgacctc--tg---cctcactttcccaaacctgctacatctagtcagtgtttaaaatctatcaa-cttta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101787 189 - 4483953 GTCTAGTACATATTAAATGCAAACCTAAA-----------CTTCTTTTCTTCAA--CCCTTCTTTCTGTTATTGG-TAT-GTTGATGA-CCCCTCacccca-c-----------ccactgacttgctg-gagctagaaacct--caacttcatccttgacctc--tg---cctcactttcccaaacctgctacatctagtcagtgtttaaaatctatcaa-cttta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732403 189 + 33263144 GTCTACTACATATTAAATGCAAACCTAAA-----------TTTCTTTTCTTCAA--CCCTTCTTTCTGTTATTGG-TAT-GTTGATGA-TCCCTCACCTCA-C-----------CCACTGACTTGCTG-GAGCTAGAAACCT--CGACTTCATCCTTGACCTC--TG---CCTCACTTTCCCAAACCTGCTACATCTAGTCAGTGTTTAAAATCTATCAA-CTTTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14013128 189 - 14338769 GTCTAGTACATATTAAATGCAAACCTAAA-----------TTTCTTTTCTTCAA--CCCTTCTTTCTGTTATTGG-TAT-GTTGATGA-CCCCTCACCCCA-C-----------CCACTGACTTGCTG-GAGCTAGAAACCT--CAACTTCATCCTTGACCTC--TG---CCTCACTTTCCCAAACCTGCTACATCTAGTCAGTGTTTAAAATCTATCAA-CTTTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951393 189 + 1946073 GTCTAGTACATATTAAATGCAAATCTAAA-----------TTTCTTTTCTTCAA--CCCTTCTTTCTGTTATTGG-TAT-GTTGATGA-CCCCTCacccca-c-----------ccactgacttgctg-gagctagaaacct--caacttcatccttgacctc--tg---cctcactttcccaaacctgctacatctagtcagtgtttaaaatctatcaa-ctgta i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1978389 191 - 2117846 GTCTAGTACACATTAAATGCAAATCTAAA-----------TCTCTTTTCTTCAA--CCCTTCTTTCGGTTATTGT-TAT-GTTGACGA-CCCCTaactcca-c-----------ccactgacttgctg-aagctagaaacct--caacttcatccttgacctc--tgcctcctcacttacccaaacctgccacatctagtcaatgtttaaaatctatcaa-ct-tg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8889228 192 - 16357246 gtctagtacacattaaatgaaaatctaaa-----------tttcctttcttcaa--ccctgctttcggtcattgg-tat-gttgatga-cccttaccaccacc-----------ccactgacttgctg-aagctagaaacct--caacttcatccttgacctt--tgccttctcacttacccaaacctgccacatctagtcaatgtttaaaatctatcaa-ct-tg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1374862 193 - 1807191 ATCTAGTACACATTAAATGCAAATCTAAA-----------TTTCTTTTCTTCAA--CCCTTCTTTCGGTTACTGG-TAT-gttgatga-cccctaacccta-t-----------ccactgacttgctg-aagctggaaacct--caacttcatccttgacctctgtgtctcctcacttacccaaacctgccccatctagtcaatgtttaaaatctatcaa-ct-tg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 52988 191 + 5963231 GTCTAGGACACAttaaatgcaaatctaaa-----------tttcttttcttcaa--cccttctttcggttattgg-tat-gttgatgaccccctaacccca-c-----------ccactgacttgctg-aagctagaaacct--caacttcattcttgacctc--tgcctcctcacttacccaaatctgccacatctagtcaatgtttaaaatctatcga-c--tg i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82841347 172 + 104043685 TTCCACAGCATAGAAACTGTAAG------------------TTTTTCTCT------------TTCCCATCAGTGG-TGT-CTTT-----CCACGCACCTTA-CCACCATTCTAACCACTG-CTGGCT--AAACGAGAGCCTTAGCAGCCTTACCCTGAACCTT--CA----CTTACTTTT----AGCTGCCCTACCTACTTAGTA--TAAAACCTACCCA-CTATA i mm10.chr15 I 2 I 218 s canFam3.chr10 46122568 163 - 69331447 GCCTGCTACACATCAGCTACAGAACGAAG--------GTCTCCCTTCTCTTTCT--CACTCCCCTTTGT-----G-TCT-GACCCAGC-CCACTCTATCTG-T-----------CCAGTGACCTG--------------CCC--TGGctttattcctcacctc---------ccatt-------acctgccacatctaactggtttctggattctgttga-cttta i canFam3.chr10 I 2 I 386 s dasNov3.JH570235 103769 197 + 1056298 GTCTCCTATACAACA-CTGcaaaactaaactgatcccttccttctcctgctcaagtccctcttttctgttattgg-cat-cttgacca-tcccta--tgca-c-----------tgactcacttgctgagagctagaaactt--cagttttatccttgacttt--------ctcactttcctttacctgctaaatctaatcagt-tttaaattccatcaatcttta i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5107513 477 - 6317780 I e micMur3.chr7 5744035 490 + 108171978 I a score=4994288.000000 s hg38.chr22_GL383582v2_alt 110562 565 + 162811 ----------gccgggtgtggtgactcacgcctataa---------tcccagcactttggg------aggcagg-tggatcgcct--gaggtcaggagttcga-------ggccagcctggccaacatggtcaaaccccatctctactaaaaaatacaaaaattagtc-ggcatg--gtggcacatgcttgtaatcccagctacttgggaggctgaggcctgggaggat-gtttg-----------aaact-g--gggggtggagg----ttgcagtgagccgagaacgtgccactgcactccagcatgggtgacagagcaggacttcgtctcaa----------------aaaaa-----------------------------------------------------------aaaaaaaaaaaaa-------------------------------------------agtc-tatcaactttgaatccc-----------taaaacgtttctcagatccatccaatccttctgactcccgtttctaccacatactcggtccttaccagctcttgcacaaattaatcccac---agcctctcgaatgacctgtctgcttctgatgtctccctacttatttcctgagtttcctttataaaacacaaacctgtacatgtgacttacacgcttagaaatcactaatggttttgcactgcccgtaaattaaaggctaaatccttCAAATACAATAG s panTro5.chr22 28890474 573 + 37823149 ----------gccgggtgcggtgactcacgcctataa---------tcccagcactttggg------aggcagg-tggatcgcct--gaggtcaggagttcca-------ggccagcctggccaacatggtcaaaccccatctctactaaaaaatacaaaaattagtc-ggcatg--gtggcacatgcttgtaatcccagctacttgggaggctgaggcctgggaggat-gtttg-----------aaact-g--gggggtggagg----ttgcagtgagccgagaacgtgccactgcactccagcatgggtgacagagcaggactccgtctcaa----------------aaaca-----------------------------------------------------------acaaaaacaaaaac-----------------------------------aaaaacaagtc-tatcaactttgaatccc-----------taaaacgtttctcagatccatccaatccttctgactcccgtttctaccacatactcggtccttaccagctcttgcacaaattaatcccac---agcctctcgaatgacctgtctgcttctgatgtctccctacttatttcctgagtttcctttataaaacacaaacctgtacatgtgatttacatgcttagaaatcactaatggttttgcactgcccgtaaattaaaggctaaatccttCAAATACAATAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41165046 573 + 50109623 ----------gccgggtgcggtgactcacgcctataa---------tcccagcactttggg------aggcagg-tggatcgcct--gaggtcaggagttcga-------ggccagcctggccaacacggtcaaaccccatctctactaaaaaatacaaaaattagtc-ggcatg--gtggcacatgcttgtaatcccagctacttgggaggctgaggcctgggaggat-gtttg-----------aaact-g--gggggtggagg----ttgcagtgagccgagaacgtgccactgcactccagcatgggtgacagagcaggactccgtctcaa----------------aaaca-----------------------------------------------------------acaaaaacaaaaac-----------------------------------aaaaaaaagtc-tatcaactttgaatccc-----------taaaacgtttctcagatccatccaatccttctgactcccgtttctaccacatactcggtccttaccagctcttgcacaaattaatcccac---agcctctcgaatgacctgtctgcttctgatgtctccctacttatttcctgagtttcctttataaaacacaaacctgtacatgtgatttacatgcttagaaatcactaatggttttgcactgcccgtaaattaaaggctaaatccttCAAATACAATAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3187913 551 + 4464012 ----------gccgggtgcggtgactcacacctataa---------tcccagcactttggg------aggcagg-tggatcgctt--gaggtcaggagttcga-------ggccagcctggccaacatggtcaaaccccatctctactaaaaaatacaaaaattagtc-ggcatg--gtggcacatgcttgtaatcccagctacttgggaggctgaggcctgggaggat-gtttg-----------aaact-g--gggggtggagg----ttgcagtgagccgagatcatgccactgcactccagcatgggtgacagagcaggactccgtctcaa----------------aa----------------------------------------------------------------aaaaaaaaaaa-------------------------------------------agtc-tatcaactttgaatccc-----------taaaacgtttctcagatccatccaatccttctgactcccgtttctaccacatactcggtccttaccggctcttgcacaaattaatcccac---agcctctcgaatgac----ctgcttctgatatctccctacttatttcctgagtttcctttataaaacacaaacctgtacatgtgatttacacgcttagaaatcactagtggttttgcactgcccgtaaattaaaggctaaatccttCA-----AATAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106683627 581 - 115148730 ----------gccgggtgtggtgactcacgcctataa---------tcccagcactttggg------aggcagg-tggatcactt--gaggtcaggagttcaa-------ggccagcctggccaacatggtcaaaccccatctctactgaaaaatacaaaaattagcc-ggtgtg--gtggcacatgcttgtaatcccagcaacttgggaggctgaggcctgggaggatggtttg-----------aaactgg--gggggtggagg----ttgcagtgagccgagatcgtgccactgcactccagcatgggtgacagagcgggactccgtcttta----------------aaaaaca-----------------aa------------------------------------acaaaacaaaaaaaaa-----------------------------------aaaacaaaaac-tatcgactttgaatccc-----------taaaacgtttctcagatccatccaatccttctgactcccgtttctaccacatactcagtccttaccagctcttgcacaaattaatcccac---agcctctcgaatgacctgtctgcttctgatgtctccctacttatttcctgagtttcctttataaaacacaaacctgtacatgtgatttacacgcttagaaatcactagtggttttacactgcccataaattaaaagctaaatccttCAAATACAATAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84298865 556 + 92844088 ----------gctgggtgtggtggctcacgcctataa---------tcccagcactttggg------aggcagg-tggatcactt--gaggtcaggagttcga-------ggccagcctggccaacatggtcaaaccccatctctact-aaaattacaaaagttagccgggcgtg--gtggcgcatgcttgtgaccccagctacttgggaggctgaggc--gggaggatggtttg-----------aaact-g--gggggtggagg----ttgcagtgagctgagatcgtgccattacattccagcctgggtgacagagcaagactccatctcaa-----------------------------------------------------------------------------------aaacaaacaa-------------------------------------------aaac-tatcaactttgaatccc-----------aaaaatgtttctcagatccatccaatccttctgactcccatttctactacatactcagtccttaccagctcttgcacaaattaatcccac---agcctctcgaatgacctgtctgcttctgatctgtccctacttatttcctgagtttcctttataaaacacaaacctgtacatgtgatttacacgcttagaaatcactagaggtttggcactgcccgtaaattaaaggttaaatccctcaAATACAATAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87645227 556 - 96509753 ----------gctgggtgtggtggctcacgcctataa---------tcccagcactttggg------aggcagg-tggatcactt--gaggtcaggagttcga-------ggccagcctggccaacatggtcaaaccccatctctact-aaaattacaaaagttagctgggcgtg--gtggcgcatgcttgtaaccccagctacttgggaggctgaggc--gggaggatggtttg-----------aaact-g--gggggtggagg----ttgcagtgagctgagatcgtgccattgcattctagcctgggtgacagagcaagactccatctcaa-----------------------------------------------------------------------------------aaacaaacaa-------------------------------------------aaac-tatcaactttgaatccc-----------aaaaatgtttctcagatccatccaatccttctgactcccatttctactacatactcagtccttaccagctcttgcacaaattaatcccac---agcctctcgaatgacctgtctgcttctgatctgtccctacttatttcctgagtttcctttataaaacacaaacctgtacatgtgatttacacgcttagaaatcactagaggtttggcactgcccgtaaattaaaggttaaatccctcaaatacaatag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7137757 564 - 13098629 ----------gctgggtgtggtggctcacgcctataa---------tcccagcactttggg------aggcagg-tggatcactt--gaggtcaggagttcga-------ggccagcctggccaacatggtcaaaccccatctctact-aaaattacaaaagttagccgggcgtg--gtggcgcatgcttgtaaccccagctacttgggaggctgaggc--gggaggatggtttg-----------aaatt-g--gggggtggagg----ttgcagtgagctgagatcgtgccattgcattccagcctgggtgacagagcaagactccatctcaa----------------aaaca-----------------------------------------------------------aacaaacaaacaa-------------------------------------------aaac-tatcaactttgaatccc-----------aaaaatgtttctcagatccatccaatccttctgactcccatttctactacatactcagcccttaccagctcttgcacaaattaatcccac---agcctctcgaatgacctgtctgcttctgatctgtccctacttatttcctgagtttcctttataaaacacaaacctgtacatgtgatttacacgcttagaaatcactagaggtttggcactgcccgtaaattaaaggttaaatccctcaaatacaatag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4101976 564 - 4483953 ----------gctgggtgtggtggctcacgcctataa---------tcccagcactttggg------aggcagg-tggatcactt--gaggtcaggagttcga-------ggccagcctggccaacatggtcaaaccccatctctact-aaaattacaaaagttagccgggtgtg--gtggcgcatgcttgtaaccccagctacttgggaggctgaggc--gggaggatggtttg-----------aaact-g--gggggtggagg----ctgcagtgagctgagatcatgccattgcattccagcctgggtgacagagcaagactccatctcaa----------------aaaca-----------------------------------------------------------aacaaacaaacaa-------------------------------------------aaac-tatcaactttgaatccc-----------aaaaatgtttctcagatccatccaatccttctgactcccatttctactacatactcagtccttaccagctcttgcacaaattaatcccac---agcctctcgaatgacctgtctgcttctgatctctccctacttatttcctgagtttcctttataaaacacaaacctgtacatgtgatttacacgcttagaaatcactagaggttttgcactgcccgtaaattaaaggttaaatccctcaAATACAATAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24732592 576 + 33263144 ----------gctgggtgtggtggctcacgcctataa---------tcccagcactttggg------aggcagg-tggatcactt--gaggtcaggagttcga-------ggccagcctggccaacatggtcaaaccccatctctact-aaaattacaaaagttagccaggcgtg--gtggcgcatgcttgtaaccccagctacttggcaggctgaggc--gggaggatggtttg-----------aaaat-g--gggggtggagg----ttgcaatgagccgagatcgtgccattgcattccagcctgggtgacagagcaagactccatctcaaaaacaaacaaacaaacaaaca-----------------------------------------------------------aacaaacaaacaa-------------------------------------------acaC-TATCAACTTTGAATCCC-----------AAAAATGTTTCTCAGATCCATCCAATCCTTCTGACTCCTGTTTCTACTACATACTCAGTCCTTACCAGCTCTTGCACAAATTAATCCCAC---AGCCTCTCGAATGACCTGTCTGCTTCTGATCTCTCCC----TATTTCCTGAATTTTCTTTATAAAACACAAACCTGTACATGTGATTTACATGCTTAGAAATCACTAGAGGTTTTGTACTGCCCGTAAATTAAAGATTAAATCCCTCAAATACAATAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14013317 560 - 14338769 ----------gctgggtgtggtggctcacgcctataa---------tcccagcactttggg------aggcagg-tggatcactt--gaggtcaggagttcga-------ggccagcctggccaacatggtcaaaccccatctctact-aaaattacaaaagttagccgggcgtg--gtggcgcatgcttgtaaccccagctacttgggaggctgaggc--gggaggatggtttg-----------aaact-g--gggggtggagg----ctgcagtgagctgagatcatgccattgcattccagcctgggtgacagagcaagactccatctcaa----------------aaaca-----------------------------------------------------------aacaaacaaaaaa-------------------------------------------aaaC-TATCAACTTTGAATCCC-----------AAAAATGTTTCTCAGATCCATCCAATCCTTCTGACTCCCATTTCTACTACATACTCAGTGCTTACCAGCTCTTGCACAAATTAATCCGAC---AGCCTCTCGAATGACCTGTCTGCTTCTGATCTCTCCC----TATTTCCTGAGTTTCCTTTATAAAACACAAACCTGTACATGTGATTTACACACTTAAAAATCACTAGAGGTTTTGCACTGCCCGTAAATTAAAGGTTAAATCCCTCAAATACAATAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 951582 570 + 1946073 ----------gctgggtgtggtggctcacgcctataa---------tcccagcactttggg------aggcagg-tggatcactt--gaggtcaggagttcga-------ggccagcctggccaacatggtcaaaccccatctctact-aaaattacaaaagttagccaggcgtg--gtggcgcatgcttgtaatcccagctacttgggaggctgaggc--aggaggatggtttg-----------aaact-g--gggggtggagg----ttgcagtaagccgagattgtgccattgcattccagcctgggtgacagagcaagactccatctcaa---------aacaaaccaacc-----------------------------------------------------------aaccaacaaaaaa-------------------------------------------aaac-tatcaactttgaatccc-----------aaaaacgtttctcagatccatccaatccttctgactcctgtttctactacacactcagtccttaccagctcttgcacaaattaatcccac---agcctctcgaatgacctgtctgcttctgatctctccctacttatttcc-gagtttcctttataaaacacaaacctgtacatgtgatttacacgcttagaaatcactagaggttttgcactgcccgtaaattaaaggctaaatccctcaAATACAATAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1978580 560 - 2117846 ----------gcggggccagatggctcatgcctgtaa---------tcccagcactttgggaggctaaggtggg-tggatcacct--gaagtggggagtttga-------gaccagcctgaccaatatgcagaaaacccatctctact-aaaaatacaaaaattagctgggcgtg--gtgatgcatgcttgtaaccccagctacttgggaggctgaggt--ggcaggatggcttg-----------aacct-g--tgaggtggagg----tcacagtgagcggagattgtgccactgcactccagcctgggtgacagagcagaactccatctcaa----------------a----------------------------------------------------------------------aaaaaa-------------------------------------------aatc-taacaactttgaatccc------------aaaatgtttctctgatccatccaatccatctgactcccacgtctaccagatagtcagtccttgtcagctctggcacaaattaatcccagagcagcgtctcaactgatctgcctgcttctgatctctccctacttatttcctgagtttccttcataaaacacaaacttgtacatgtgatttacacacttagaaatcactagtggttttgcactgcctgtaaattaaaggctaaatccttCAAA-ACAACAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8889420 504 - 16357246 ----------gccgggcc-------------------------------------------------aggtggg-tcgatcacct--gaagtcgggagtttga-------gaccagcctgaccaatatggagaaaccccatctctact-aaaaatacaaaaattagctgggcgtg--gtgatgcatgcttgtaatcccagctacttgggaggctgaggt--ggcaggatggcttg-----------aacct-g--ggaggtggagg----tcacagtgagaggagattgtgccactgcattccagcctgggtgacagagcaagacttcatctc-------------------------------------------------------------------------------------------aaaa-------------------------------------------aatc-tatcaactttgaatccc------------aaaacgtttctcagatccatccaatccttctgactcccatgtctaccagatattcagtccttatcacctcttacacaaattaatcccag---agtgtctcaactgatctgcctgcttctgatctc--------tatttcctgagtttcctttataaaacacaagcttgtacatgcgatttacacacttagaaatcactagtggttttgcactgcctgtaaattaaaggctaaatccttCAAA-ACAACAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1375055 578 - 1807191 ----------gccgggccaggtggctcatgcctgtaa---------tccgagcactttgggaggcaaaggtggg-tggatcacct--gaagtcgggagtttga-------gaccagcctgaccaatatggagaaaccccatctctact-aaaaatacaaaaattagctgggcgtg--gtgatgcatgcttgtaatcccagctacttgggaggctgaggt--ggcaggatggcttg-----------aaccc-g--ggaggcggagg----tcaaagttagcggagattgtgctactgcactccagcctgggtgacagagcaagacttcatctcaa----------------aaacaac-----------------aaca--------------------------------acaacaacaacaacaaA-------------------------------------------AAAc-tatcaactttgaatccc------------aaaacgtttctcagatccatccaatccttctgactcccatgtctaccagatactcagtccttatcagctcttgcacaaattaatcccag---agcatctcaactgatctgcctgcttctgatctctccctatttatttcctgagtttcctttataaaacacaagcttgtacatgtgatttacacacttagaaatcactagtggttttgcactgcctgtaaattaaaggctaaatccttTAAG-ACAACAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 53179 567 + 5963231 ----------gtcaggccaggtggctcatgcctgtaa---------tcccagcactttgggaggctaaggtggtctggatcacct--gaagtcaggagtttga-------gaccagcctgaccaatatggagaaaccccatctctact-aaaaatacaaatattagctgggcatg--gcaatacacgcttgtaatcccagctgcttgggaggctgaggt--ggcaggatggtttg-----------aacct-g--ggaggtggagg----tcacagtgagcagaggttgtgccactgcactccagcctgggtgatggagcaagactccatctcaa----------------aaaaaaa-----------------aa---------------------------------------------aaaaaa-------------------------------------------aatcttatcaactttgaatccc------------aaaacatttctcagatccatccaatccttctgacttccatgtttaccagatattcagtccttatcagctcttgcacaaattaatcccag---agcatctccactgatctgcctgcttctgatctctccctacttatttcctgagtttcctttataaaacacaaacttgtacatgtgatttacacacttagaaatcactagtggttttgcactgcctgtaaattaaaggctaaatccttCAAA-ACAACAG i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 103966 657 + 1056298 actccaaaatgtttctcagaaATGTTCATGCTgggaagcggacttggcccagtggttaggg------tgtctg--tctaccacatgggaggtctgcagttcaaacccccgggcctccttgacccgtgtggcgctggcctatgtgtagt-------gctgatgcgcgcaaggagtgccgtgccacacaggggtgtcccccac-gtaggggagccccacgc--gcaagga--gtgtgccctgtaaggagagct-gccgagcgtgaaagaaaagtgcagccttcccagga-gtggcaccgcacacacgcagagctgacacaacaagataacgcaacaa----------------aaaagaatttccggtgccgctgacaacagaagcggacaaagaagaataagcagtgaatagacacagagaacagacaactggagtgggagggcggggcgggggggggggcggagagaaataaata-aatcaatcttaaaaaaAAAAAAAAGAAAAAAAA--------AGAAATGTCCATGCCTTCTGATATCC--TTCTAAT----------------------------CAAGCTAATGCCA----GGCTCCTCGATTGGTTTGCCTGCTTCCCACACTCCCCTACTTCTTTCCTAAATTTCCTTTGTAGAACACAAAACTGATTATGTGATTTACATGTCTAGAAAGCTTTAGTGGATTTG-----------------AGGTCAATTCCTTAGAATATGACAG i dasNov3.JH570235 C 0 I 273 e mm10.chr15 82841519 218 + 104043685 I e canFam3.chr10 46122731 386 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5107513 477 - 6317780 I e micMur3.chr7 5744035 490 + 108171978 I a score=3107902.000000 s hg38.chr22_GL383582v2_alt 111127 345 + 162811 ATCCCtgatatggtttggatctgtgacttcaccaaatctcaggttgaactgtagcacccaatgctggaggcagggcctggtgggaggtggctggatcatgtgggtgctattcctgtgatactgagttctcacaagacctg-------------------gttgtttgaaagtgtgcaacacctcgcacctcactctgtcttgctcctg-------ccatgcaagaagccttcctgctccc--c-ctctacct-ccctccatgactgtaagtttcctgaggcctccccagaagctgagcagatgcaggcatcatgcttcctatacagcttccagaactgtgagccaattcaac-ctc-ttttcttc-------------------atacatcaccca s panTro5.chr22 28891047 345 + 37823149 ATCCCtgatatggtttggatctgtgacttcaccaaatctcaggttgaattgtagcacccaatgctggaggcagggcctggtgggaggtggctggatcatgtgggtgctgttcctgtggtagtgagttctcacaagacctg-------------------gttgtttgaaagtgtgcaacacctcgcacctcactctgtcttgctcctg-------ccatgcaagaagccttcctgctccc--c-ctctacct-ccctccatgactgtaagtttcctgaggcctccccagaagctgagcagatgcaggcatcatgcttcctatacagcttccagaactgtgagccaattcaac-ctc-ttttcttt-------------------atacatcaccca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41165619 345 + 50109623 ATCCCtgatatggtttggatctgtgacttcaccaaatctcaggttgaattgtagcacccaatgctggaggcagggcctggtgggaggtggctggatcatgtgggtgctgttcctgtgatagtgagttctcacaagacctg-------------------gttgtttgaaagtgtgcaacacctcgcacctcactctgtcttgctcctg-------ccatgcaagaagccttcctgctccc--c-ctctacct-ccctccatgactgtaagtttcctgaggcctccccagaagctgagcagatgcaggcatcatgcttcctatacagcttccagaactgtgagccaattcaac-ctc-ttttcttt-------------------atacatcaccca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3188464 345 + 4464012 ATCCCtgatacagtttggatctgtgacttcaccaattctcaggttgaattgtagcacccaatgctggaagcagggcctggtgggaggtggttggatcaggtgggtgctgttcctgtgatagtgagttctcacaagacctg-------------------gttgtttgaaagcgtgcagcacctcgcacctcactctgtcttgctcctg-------ccatgcaagaagccttcctgctccc--c-ctctacct-cccttcatgactgtaagtttcctgaggcctccccagaagctgagcagatgcaggcatcatgcttcctatacagcttccagaactgtgagccaattcaac-ctc-ttttcttt-------------------acacatcaccca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106684208 347 - 115148730 AGCCCtgatatggtttggatctgtgtcttcaccaaatatcagggtgaattgtagtacccaatgctggaggtagggcctggtgggaggtggttgcatcatgtgggtgctgttcctgtgatagtgagttctcacaagacctg-------------------gttgtttaaaattgtgcagcacctcgcacctcactctgtcttgctcctg-------ccatgcaagaagccttcttgctccccgc-ctctacct-ccctccatgactctaagtttcctgaggcctccccagaagctgagcagatgcaggcatcatgcctcctatacagcttccagaactgtgagccaattcaac-ctc-ttttcttt-------------------atacatcaccca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84299421 346 + 92844088 AGCACtgatatggtttggatctgt--cttcaccaaatctcgtgttgaattgtagtacccagtgctggaggtagggcctggtgggaggtggatggatcatgtgggtgctgttcctgtgagacagagttctcacaagacctg-------------------gttgtttaaaagtgtgtagcaccttccacctcactctgtcttgctcctggctccttccatgcaagaagcc----tgctccc--c-ctttgcct-ctgaccatgactgtaagtttcctggggcctctccagaagctgagcagatgctggcatcatgattcctatacagcttccagaactgtgagccaattcaac-ctc-ttttcttt-------------------atatattaccca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87645783 346 - 96509753 agcactgatatggtttggatctgt--cttcaccaaatctcgtgttgaattgtagtacccagtgctggaggtagggcctggtgggaggtggatggatcatgtgggtgctgttcctgtgagacagagttctcacaagacctg-------------------gttgtttaaaagtgtgcagcaccttccacctcactctgtcttgctcctggctccttccatgcaagaagcc----tgctccc--c-ctttgcct-ctgaccatgactgtaagtttcctggggcctctccagaagctgagcagatgctggcatcatgattcctatacagcttccagaactgtgagccaattcaac-ctc-ttttcttt-------------------atatattaccca i macFas5.chr10 C 0 I 323 s macNem1.NW_012012688v1 7138321 346 - 13098629 AGCACtgatatggtttggatctgt--cttcaccaaatctcgtgttgaattgtagtacccagtgctggaggtagggcctggtgggaggtggatggatcatgtgggtgctgttcctgtgagacagagttctcacaagacctg-------------------gttgtttaaaagtgtgcagcaccttccacctcactctgtcttgctcctggctccttccatgcaagaagcc----tgctccc--c-ctttgcct-ctgaccatgactgtaagtttcctggggcctctccagaagctgagcagatgctggcatcatgattcctatacagcttccagaactgtgagccaattcaac-ctc-ttttcttt-------------------atatattaccca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4102540 347 - 4483953 AGCACtgatatggtttggatctgt--cttcaccaaatctcgtgttgaattgtagtacccagtgctggaggtagggcctggtgggaggtggatggatcatgtgggtgctgttcctgtgagacagagttctcacaagacctg-------------------gttgtttaaaagtgtgcagcaccttccatctcactctgtcttgctcctggctccttccatgcaagaagcc----tgctccc--c-ctttgcct-ctgtccatgactgtaagtttcctggggactctccagaagctgagcagatgctggcatcatgattcctatacagcttccagaactgtgagccaattcaac-ctcttttttttt-------------------atatattaccca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24733168 346 + 33263144 AGCACtgatatggtttggatctgt--cttcaccaaatctcatgttgaattgtagtacccagtgctggaggtagggcctggtgggaggtggatggatcatgtgggtgctgttcctgtgagacagagttctcacaagacctg-------------------gttgtttaaaagtgtgcagcaccttccacctcactctgtcttgctcctggctccttccatgcaagaagcc----tgctccc--c-ctttgcct-ctgtccatgactgtaagtttcctggggcctctccagaagctgagcagatgccagcatcatgattcctatacagcttccagaactgtgagccaattcaac-ctc-ttttcttt-------------------atatattaccca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14013877 346 - 14338769 AGCACtgatatagtttggatctgt--cttcaccaaatctcgtgttgaattgtagtacccagtgctggaggtagggcctggtgggaggtggatggatcatgtgggtgctgttcctgtgagacagagttctcacaagacctg-------------------gttgtttaaaagtgtgcagcaccttccacctcactctgtcttgctcctggctccttccatgcaagaagcc----tgctccc--c-ctttgcct-ctgtccatgactgtaagtttcctggggactctccagaagctgagcagatgctggcatcatgattcctatacagcttccagaactgtgagccaattcaac-ctc-ttttcttt-------------------atatattaccca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 952152 345 + 1946073 AGCACGgatacggtttggatctgt--cttcaccaaatctcatgttgaattgtagtacccaatgctggaggtagggcctggtgggaggtggatggatcacgtgggtgctgttcctgtgaggccgagttcttacaagacctg-------------------gctgtttaaaagtgtgcagcaccttccacctcactctgtcttgctcct-gctccttccatgcaagaagcc----tgctccc--c-ctttgcct-ccttccatgactgtaagtttcctggggcctctccagaagctgagcagatactggcatcatgattcctatacagcttccagaactgtgagccaattcaac-ctc-ttttcttt-------------------atatattatcca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1979140 350 - 2117846 AGTCCtgatatggtttggatctatgtcttcaccaaatctcatgctgaattgtagtacccaatgctggaggtagggcctggtaggagttggttggatcatggggatgctgttcttgtgacagtga--gttcacaagatatg----------------ttttttttttaaaagggtgcagcccctcccccc-cactctctcttgctcctggctcctgccatgcaagaagct----tgctccc--cgctttgcctcccctccatgattgtaagtttcctgaggcctccccagaagctgagcagatgccagcaccatgcttcctgtacagcttccggaactatgagccaattaaac-ttc-ttttcttt-------------------ataaattaccca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8889924 339 - 16357246 AGCCCtgatacggtttggatctgtgtcctcaccaaatctcatgctgaattgtagtacccaatgctggaggtagggcctggcaggaggtggttggatcatgggggtgctattcttgtgacaat----tctcacaagatacg-----------------tttttttttaaaagggtgcggcccctcccccctcactctctctt-------gctcctgccatgcaagaagct----tgctccc--c-ctttgcct-ccctccatgattgtaagtttcctgaggcctccccagaagctgagcagatgcccgcaccatgcttcctgtacagcttccagaactatgagccaattaaac-ttc-ttttcttt-------------------atgaattaccca i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1375633 386 - 1807191 AGCCCtgatatggtttgggactgtgtcttcaccaaatctcatgctgaattgtagtacccaatgctggaggtagggcctggtaggaggtgtttggatcatgggggtgctattcctgtgacagtgagttctcacaagatagggtttttttttgtttgttttgtttttttaaagggtgcagcccctcccccctcactctctcttgctcct-gctcctgccatgcaagaagct----tgctcct--c-ctttacct-ccctccgtgattgtaagttttctgaggcctccccagaagctgagcagatgcccgcaccatgcttcctgtacagcttccagaactctaagccaattaaactttc-ttttctttttttttttttttttttttaataaattaccca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 53746 360 + 5963231 AGCCCtgatatggtttggatctgtgtcttcaccaaatctcatgctgaattgtagtacccaatgctggaggtagggcctggtagaaggtggttggatcatgcgggtgccattcctgtgacagtgagttctcacaagatatg------tttttgtttttttttttttaaaaagggtgcagcccctcccccctcactctctcttgctcct-gctcctgccatgcaagcagct----tgctccc--c-ctttgcct-ccctccatgattctaagtttcctgagacctcctcagaagctgagcagatgccagcaccatgcttcctgtacagccgccagaactatgagccaattaaac-ttc-ttttcttt-------------------ataaattaccca i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82841519 218 + 104043685 I e dasNov3.JH570235 104623 273 + 1056298 I e canFam3.chr10 46122731 386 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5107513 477 - 6317780 I e micMur3.chr7 5744035 490 + 108171978 I a score=28300.000000 s hg38.chr22_GL383582v2_alt 111472 3 + 162811 gcc s panTro5.chr22 28891392 3 + 37823149 gcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41165964 3 + 50109623 gcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3188809 3 + 4464012 gcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106684555 3 - 115148730 gtc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84299767 3 + 92844088 gtc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87646452 3 - 96509753 gcc i macFas5.chr10 I 323 C 0 s macNem1.NW_012012688v1 7138667 3 - 13098629 gtc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4102887 3 - 4483953 gtc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24733514 3 + 33263144 gtc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14014223 3 - 14338769 gtc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 952497 3 + 1946073 gtc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1979490 3 - 2117846 gtc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890263 3 - 16357246 gtc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376019 3 - 1807191 gtc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54106 3 + 5963231 gtc i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82841519 218 + 104043685 I e dasNov3.JH570235 104623 273 + 1056298 I e canFam3.chr10 46122731 386 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5107513 477 - 6317780 I e micMur3.chr7 5744035 490 + 108171978 I a score=61952.000000 s hg38.chr22_GL383582v2_alt 111475 5 + 162811 tcagg s panTro5.chr22 28891395 5 + 37823149 tcagg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41165967 5 + 50109623 tcagg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3188812 5 + 4464012 tcagg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106684558 5 - 115148730 tcagg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84299770 5 + 92844088 tcagg i rheMac8.chr10 C 0 I 346 s macFas5.chr10 87646455 5 - 96509753 tcagg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7138670 5 - 13098629 tcagg i macNem1.NW_012012688v1 C 0 I 5393 s cerAty1.NW_011999588v1 4102890 5 - 4483953 tcagg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24733517 5 + 33263144 tcagg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14014226 5 - 14338769 tcagg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 952500 5 + 1946073 tcagg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1979493 5 - 2117846 tcagg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890266 5 - 16357246 tcagg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376022 5 - 1807191 tgagg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54109 5 + 5963231 tcagg i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82841737 5 + 104043685 TCAGG i mm10.chr15 I 218 C 0 e dasNov3.JH570235 104623 273 + 1056298 I e canFam3.chr10 46122731 386 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5107513 477 - 6317780 I e micMur3.chr7 5744035 490 + 108171978 I a score=31665.000000 s hg38.chr22_GL383582v2_alt 111480 5 + 162811 tattt- s panTro5.chr22 28891400 5 + 37823149 tattt- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41165972 5 + 50109623 tattt- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3188817 5 + 4464012 tattt- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106684563 5 - 115148730 tattt- i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87646460 5 - 96509753 cattt- i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4102895 5 - 4483953 cattt- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24733522 5 + 33263144 cattt- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14014231 5 - 14338769 cattt- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 952505 5 + 1946073 cattt- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1979498 5 - 2117846 tattt- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890271 5 - 16357246 tattt- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376027 5 - 1807191 tattt- i cebCap1.NW_016107750v1 C 0 I 15 s aotNan1.NW_018512383v1 54114 5 + 5963231 tattt- i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82841742 5 + 104043685 -ATTAC i mm10.chr15 C 0 C 0 e dasNov3.JH570235 104623 273 + 1056298 I e canFam3.chr10 46122731 386 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5107513 477 - 6317780 I e micMur3.chr7 5744035 490 + 108171978 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I e rheMac8.chr10 84299775 346 + 92844088 I a score=19509.000000 s hg38.chr22_GL383582v2_alt 111485 4 + 162811 cttt s panTro5.chr22 28891405 4 + 37823149 cttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41165977 4 + 50109623 cttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3188822 4 + 4464012 cttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106684568 4 - 115148730 cttt i nomLeu3.chr7b C 0 I 14 s macFas5.chr10 87646465 4 - 96509753 cttt i macFas5.chr10 C 0 I 14 s cerAty1.NW_011999588v1 4102900 4 - 4483953 cttt i cerAty1.NW_011999588v1 C 0 I 340 s chlSab2.chr19 24733527 4 + 33263144 cttt i chlSab2.chr19 C 0 I 434 s manLeu1.NW_012102031v1 14014236 4 - 14338769 cttt i manLeu1.NW_012102031v1 C 0 I 336 s colAng1.NW_012115588v1 952510 4 + 1946073 cttt i colAng1.NW_012115588v1 C 0 I 337 s calJac3.chrUn_GL286373 1979503 3 - 2117846 -tat i calJac3.chrUn_GL286373 C 0 I 12 s saiBol1.JH378157 8890276 3 - 16357246 -tat i saiBol1.JH378157 C 0 I 12 s aotNan1.NW_018512383v1 54119 3 + 5963231 -tat i aotNan1.NW_018512383v1 C 0 I 12 s mm10.chr15 82841747 4 + 104043685 CTTA i mm10.chr15 C 0 C 0 e dasNov3.JH570235 104623 273 + 1056298 I e canFam3.chr10 46122731 386 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5107513 477 - 6317780 I e micMur3.chr7 5744035 490 + 108171978 I e cebCap1.NW_016107750v1 1376032 15 - 1807191 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I e rheMac8.chr10 84299775 346 + 92844088 I a score=98714.000000 s hg38.chr22_GL383582v2_alt 111489 13 + 162811 acggactaataca s panTro5.chr22 28891409 13 + 37823149 acggactaataca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41165981 13 + 50109623 acggactaataca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3188826 13 + 4464012 acggactaataca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106684586 13 - 115148730 atggactaatacT i nomLeu3.chr7b I 14 C 0 s rheMac8.chr10 84300121 13 + 92844088 acggaccaataca i rheMac8.chr10 I 346 C 0 s macFas5.chr10 87646483 13 - 96509753 atggaccaataca i macFas5.chr10 I 14 C 0 s cerAty1.NW_011999588v1 4103244 13 - 4483953 acggaccaataca i cerAty1.NW_011999588v1 I 340 C 0 s chlSab2.chr19 24733965 13 + 33263144 acggaccaataca i chlSab2.chr19 I 434 C 0 s manLeu1.NW_012102031v1 14014576 13 - 14338769 acggaccaataca i manLeu1.NW_012102031v1 I 336 C 0 s colAng1.NW_012115588v1 952851 13 + 1946073 acggaccaatata i colAng1.NW_012115588v1 I 337 C 0 s calJac3.chrUn_GL286373 1979518 13 - 2117846 acagactaatata i calJac3.chrUn_GL286373 I 12 C 0 s saiBol1.JH378157 8890291 13 - 16357246 acagactaacata i saiBol1.JH378157 I 12 C 0 s cebCap1.NW_016107750v1 1376047 13 - 1807191 acagaccaatata i cebCap1.NW_016107750v1 I 15 C 0 s aotNan1.NW_018512383v1 54134 13 + 5963231 acagactaatata i aotNan1.NW_018512383v1 I 12 C 0 s mm10.chr15 82841751 12 + 104043685 AAGCACCAAGGC- i mm10.chr15 C 0 C 0 e dasNov3.JH570235 104623 273 + 1056298 I e canFam3.chr10 46122731 386 - 69331447 I e otoGar3.GL873526 36316700 270 - 42659167 I e proCoq1.NW_012136747v1 5107513 477 - 6317780 I e micMur3.chr7 5744035 490 + 108171978 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I a score=349735.000000 s hg38.chr22_GL383582v2_alt 111502 37 + 162811 AGCCCTCT-GGAGTTCACATATTCTCAGTATATTCACT s panTro5.chr22 28891422 37 + 37823149 AGCCCTCT-GGAGTTCACATATTCTCAGTATATTCACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41165994 37 + 50109623 AGCCCTCT-GGAGTTCACATATTCTCAGTATATTCACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3188839 37 + 4464012 AGCCCTCT-GGAGTTCACATATTCTCAGTATATTCACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106684599 37 - 115148730 AGCCCTCT-GGAGTTCACATATTCTCAGTATACTCACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300134 37 + 92844088 AGCCCTTT-GGAGTTCACATATTCTCCCTATATTCACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87646496 37 - 96509753 AGCCCTTT-GGAGTTCACATATTCTCCCTATATTCACT i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4103257 37 - 4483953 AGCCCTTT-GGAGTTCACATATTCTCCCTATATTCACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24733978 37 + 33263144 AGGCCTCT-GGAGTTCACATATTCTCCCTATATTCACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14014589 37 - 14338769 AGCCCTTT-GGAGTTCACATATTCTCCCTATATTCACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 952864 37 + 1946073 AGCCCTCT-GGAGTTCACATATTCTCCCTATATTCACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1979531 36 - 2117846 AGCCCTCT-GGAGTTGACATATTCTTGATATA-TCACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890304 37 - 16357246 AGCCCTCT-GGAGTTCACATATTCTTGATATATTCACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376060 37 - 1807191 ATCCCTCT-GGAGTTCACATATTCTTGATATAGTCACT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54147 37 + 5963231 AGCCCTCT-GGAGTTCACATATTCTTGATATATTCACT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36316970 37 - 42659167 AGCACTCT-AGAGTTTGTATATTTTCTGTATATTAACT i otoGar3.GL873526 I 270 C 0 s mm10.chr15 82841763 27 + 104043685 -GTCCTCTAAGAGTTCACATATT----------TCATT i mm10.chr15 C 0 C 0 e dasNov3.JH570235 104623 273 + 1056298 I e canFam3.chr10 46122731 386 - 69331447 I e proCoq1.NW_012136747v1 5107513 477 - 6317780 I e micMur3.chr7 5744035 490 + 108171978 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I a score=104174.000000 s hg38.chr22_GL383582v2_alt 111539 11 + 162811 GT--TTTAGGGGA s panTro5.chr22 28891459 11 + 37823149 GT--TTTAGGGGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166031 11 + 50109623 GT--TTTAGGGGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3188876 11 + 4464012 GT--TTTAGGGGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106684636 11 - 115148730 GT--TTTGGGGGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300171 11 + 92844088 GT--TTTGGGGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87646533 11 - 96509753 GT--TTTGGGGGA i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4103294 11 - 4483953 GT--TTTAGGGGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734015 11 + 33263144 GT--TTTGGGGGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14014626 11 - 14338769 GT--TTTGGGGGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 952901 11 + 1946073 GT--TTTGGGGGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1979567 11 - 2117846 GT--TTTGGGGGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890341 11 - 16357246 GT--TTTAGGGGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376097 11 - 1807191 GT--TTTGGGGGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54184 11 + 5963231 GT--TTTGGGGGA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36317007 13 - 42659167 CTTATTTTGGGAA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82841790 10 + 104043685 AA--CTGAGGAA- i mm10.chr15 C 0 C 0 s dasNov3.JH570235 104896 11 + 1056298 GT--TTTAGGCGG i dasNov3.JH570235 I 273 C 0 e canFam3.chr10 46122731 386 - 69331447 I e proCoq1.NW_012136747v1 5107513 477 - 6317780 I e micMur3.chr7 5744035 490 + 108171978 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I a score=999719.000000 s hg38.chr22_GL383582v2_alt 111550 85 + 162811 GGAGGTGGAATGCTATAGGGAAGTATTTGTCCTGAATCATTCTGTGGA----TACACCACACAAACTCAGAATTCTTAATTATTTTGGG s panTro5.chr22 28891470 85 + 37823149 GGAGGTGGAATGCTATAGGGAAGTATTTGTCCTGAATCATTCTGTGGA----TACACCACACAAACTCAGAATTCTTAATTATTTTGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166042 85 + 50109623 GGAGGTGGAATGCTATAGGAAAGTATTTGTCCTGAATCATTCTGTGGA----TACACCACACAAACTCAGAATTCTTAATTATTTTGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3188887 85 + 4464012 GGAGGTGGAATGCTATAGGGAAGTATTTGTCCTGAATCATTCTGTGGA----TACACCACACAAACTCAGAATTCTTAATTATTTTGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106684647 82 - 115148730 GGAGGTGGAATGCTATAGGGAAGTATTTGTCCTGAATCATTCTGTGGG----TATACCACACAAACTCAGAATTCT---TTATTTTGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300182 85 + 92844088 GGAGGTGGAGTGCTATAGGGAAGTATTTGTCCTGAACCATTCTGTGAG----TACACCACACAAACTCGGAATTCTTAATTATCTGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87646544 85 - 96509753 GGAGGTGGAGTGCTATAGGGAAGTATTTGTCCTCAACCATTCTGTGAG----TACACCACACAAACTCGGAATTCTTAATTATCTGGGG i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4103305 85 - 4483953 GGAGGTGGAGTGCTATAGGGAAGTATTTGTCCTGAACCATTCTGTGAG----TACACCACACAAACTCGGAATTCTTAATTATCTGGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734026 85 + 33263144 GGAGGTGAAGTGCTATAGGGAAGTATTTGTCCTGAACCATTCTGTGAG----TACACCACACAAACTTGGAATTCTTAATTATCTGGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14014637 85 - 14338769 GGAGGTGGAGTGCTATAGGGAAGTATTTGTCCTGAACCATTCTGTGAG----TACACCACACAAACTCGGAATTCTTAATTATCTGGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 952912 85 + 1946073 GGAGGTGGAGTGCTATAGGGAAGTATTTGTCCTGAACCATTCTGTGAG----TACACCACACAAACTCAGAATTCTTAATTATCTGGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1979578 81 - 2117846 GGAGGTGGAATGCTACAGGGAAGTATTTGTCCTGAATCATTCTGAGGG----TATACCGCACAAACTCAGAATTC----TTATTTTGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890352 81 - 16357246 GGAGGTGGAGTGCTACAGGGAAGTATTTGTCCTGAATCACTCTAAGGG----TATACCACACAAACTCAGAATTC----TTATTTTGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376108 81 - 1807191 GGAGGTGGAGTGCTACAGGGAAGTGTTTGTCCTGAATCATTCTGAGGG----TATACCACACAAACTCAGAATTC----TTATTTTGGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54195 81 + 5963231 GGAGGTGGAGTGCTACAGGGAAGTATTTGTCCTGAATCATTCTGAGAG----TATACCACAGAAACTTGGGATTC----TTATTTTGGG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5744525 85 + 108171978 GGAAGTGGAGTGCTGTAGGAAAGTATTTGCTATGAATCATTCTGTGGG----TATACAACACAAACTCAGAATTCTTAATTATTGTGGG i micMur3.chr7 I 490 I 40 s proCoq1.NW_012136747v1 5107990 85 - 6317780 GGAAGTGGAATGCTGTAGGAAAGTATTTGCTCTGAATCATTCTGTGGG----TATACAACACAAACTCAGAATTCTTAATTATTGTGGG i proCoq1.NW_012136747v1 I 477 I 89 s otoGar3.GL873526 36317020 80 - 42659167 GGAGGGGGAGCACTG-----GTGTATTTGCCCTGAATCATCCTGTGGG----TATACCACACAAATTCAGAATTCTTAATTGCTGTGGG i otoGar3.GL873526 C 0 I 4 s mm10.chr15 82841800 74 + 104043685 GGGGAGGGACTA------GGAAATGTTTGCCTTAAATTACTCTACACACTTTTATACCACACAA---------TTTTAATTAGTCTGAG i mm10.chr15 C 0 C 0 s dasNov3.JH570235 104907 59 + 1056298 GGAGATGGGCATGGAAAGGGAAGTATGTGCCCTGAAT---------------T--ACCACACAAACTCTGAATTAA------------- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46122731 386 - 69331447 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I a score=386068.000000 s hg38.chr22_GL383582v2_alt 111635 39 + 162811 C----CTTTTAGTGCTGACATGTTAA-A---AAG-TTTACTTAAAAAA s panTro5.chr22 28891555 39 + 37823149 C----CTTTTAGTGCTGACATGTTAA-A---AAG-TTTACTTAAAAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166127 39 + 50109623 C----CTTTTAGTGCTGACATGTTAA-A---AAG-TTTACTTAAAAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3188972 39 + 4464012 C----CTTTTAGTGCTGACATGTTAA-A---AAG-TTTACTTAAAAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106684729 43 - 115148730 CCTTACTTTTAGTGCTGACATGTTAA-A---AAG-TGTACTTAAAAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300267 43 + 92844088 CCTTACTTTTAGTGCTGACATGTTAA-A---AAG-TTTACTTAAAAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87646629 43 - 96509753 CCTTACTTTTAGTGCTGACATGTTAA-A---AAG-TTTACTTAAAAAA i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4103390 43 - 4483953 CCTTACTTTTAGTGCTAACCTGTTAA-A---AAG-TTTACTTAAAAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734111 43 + 33263144 CCTTACTTTTAGTGCTGACATGTTAA-A---AAG-TTTACTTAAAAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14014722 43 - 14338769 CCTTACTTTTAGTGCTGACCTGTTAA-A---AAG-TTTACTTAAAAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 952997 43 + 1946073 CCTTACTTTTAGTGCTGACATGTTAA-A---AAG-TTTACTTAAAAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1979659 42 - 2117846 CCTTA-TTTTAGTGCTGACATGTTAA-A---AAG-TTACCTTAAAAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890433 42 - 16357246 CCTCA-TTTTGGTGCTGACATGTTAA-A---AAG-TTACCTTAAAAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376189 42 - 1807191 CCTCA-TTTTAGTGCTGACATGTTAA-A---AAG-TTACCTTAAAAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54276 42 + 5963231 TCTTA-TTTTAGTGCTGACATGCTAA-A---AAG-TTACCTTAAAAAG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36317104 42 - 42659167 ----CCTTGCAGTGCAGACTTGTGAA-AAAGAAG-TTTACTTAAAAAA i otoGar3.GL873526 I 4 C 0 s mm10.chr15 82841874 44 + 104043685 TCTCCATTATAATGCTAATATACTGA-A---AAGATTTACTTAAAAAA i mm10.chr15 C 0 C 0 s dasNov3.JH570235 104966 40 + 1056298 ----GCCCTTATTTCTGGCTTGTCAAGA---AAG-TTTACTTAAGAAA i dasNov3.JH570235 C 0 I 1 e canFam3.chr10 46122731 386 - 69331447 I e proCoq1.NW_012136747v1 5108075 89 - 6317780 I e micMur3.chr7 5744610 40 + 108171978 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I a score=1471528.000000 s hg38.chr22_GL383582v2_alt 111674 161 + 162811 ACAACTTTAga--ccaggcgcggtg--gctcatgcctgtaatcccaacacttcgggaggctgaggcagacgga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctcgccaacatggtgaaaccccgtctctac--taaaaatacaaaaattagccaggcatggtggca s panTro5.chr22 28891594 161 + 37823149 ACAACTTTAga--ccaggcgcggtg--gctcatgcctgtaatcccaacacttcgggaggctgaggcagacgga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccccgtctctac--taaaaatacaaaaattagccaggcatggtggca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166166 161 + 50109623 ACAACTTTAga--ccaggcgcggtg--gctcatgcctgtaatcccaacacttcgggaggctgaggcagacgga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccccgtctctac--taaaaatacaaaaattagccaggcatggtggca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189011 161 + 4464012 ACAACTTTAga--ccaggcgcggtg--gctcatgcctgtaatcccaacacttcgggaggctgaggcagacgga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccccatctctac--taaaaatacaaaaattagccaggcatggtggca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106684772 161 - 115148730 ACAACTTTAga--ccaggcatggtg--gctcatgcctgtaatcccaacacttcgggaggctgaggcagacaga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccccatctctac--taaaaatacaaaaattagccaggcacggtggca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300310 161 + 92844088 CCAACTTTAga--ccaggcgcggtg--gctcatgcctgtaatcccaccactttaggaggctaaggcagacaga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccctgtctctac--taaaaatacaaaaattagctgggcatggtggca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87646672 161 - 96509753 CCAACTTTAga--ccaggcgcggtg--gctcatgcctgtaatcccaccactttaggaggctaaggcagacaga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccctgtctctac--taaaaatacaaaaattagctgggcatggtggca i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4103433 161 - 4483953 ACAACTTTAga--ccaggcgcggtg--gctcatgtctgtaatcccaccactttaggaggctaaggcagacaga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccctgtctctac--taaaaatacaaaaattagctgggcatggtggca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734154 161 + 33263144 ACAACTTTAga--ccaggcgcggtg--gctcatgcctgtaatcccaccactttaggaggctaaggcagacaga-tcagt-tgaggtcag--------------------------gagttggagatcagcctggccaacatggtgaaaccctgtctctac--taaaaatacaaaaattagctgggcatggtggca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14014765 161 - 14338769 ACAACTTTAga--ccaggcgcggtg--gctcatgcctgtaatcccaccactttaggaggctaaggcagacaga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccctgtctctac--taaaaatacaaaaattagctgggcatggtggca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953040 160 + 1946073 -CAACTTCAGA--Acaggcgcggtg--gctcatgcctgtaatctcaccactttgggaggctgaggcagacgga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccctgtctctac--taaaaatacaaaaattagctgggcatggtggca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1979701 160 - 2117846 -CAACTGTAgg--ccgggcacggtg--gctcacacctgtaatcctagcactttgggaggctgaggtgggcaga-tcact-tgaggtcag--------------------------gagtttaagatcagcctggccaacatagtgaaaccccgtctctac--taaaagtacaaaaattaaccaggcatggtggca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890475 160 - 16357246 -CAACTGTAgg--ccaggcatggtg--gctcatgcctgtaatcctagcgcttttggaggctgaggtgggcaga-tcact-tggggtcag--------------------------gagtttaagatcggcctggccaacagagtgaaaccctgtctctac--taaaagtacaaaaattaaccaggcatagtggta i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376231 160 - 1807191 -CAACTGTAgg--ccgggcacggtg--gctcacgcctgcaatcctagcacttggggaggccgaggtgggcaga-tcact-tgaggtcag--------------------------gagtttaagatcggcctggccaacacaatgaaaccccgtctctac--taaaagtacaaaaattaaccagacatggtggca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54318 160 + 5963231 -CAACTGTAgg--ccgggcacggtg--gctcacacctgtaatcctagcactttgggaggccgaggtgggcaga-tcact-tgaggtcag--------------------------gagtttaagatcagcctggccaacatagtgaaaccccgtctctac--taaaagtacaaaaattaaccaggcatggtggca i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36317146 139 - 42659167 -CAACTTT--------------------ctcacacctgtaattctggctattcaggagactgaggcgggagga-tcatc-tgaagatag--------------------------gagtttgaga-----ctgggcaaga--gcaagacactatctctacaaaaaaaatagaaaaattaacagggcatcatagca i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82841918 187 + 104043685 -TAAAAACAGGGTCAgggtggggtgaagggcacacctttaat---agcac-tggagaggcagaggtaggtagattcagtgtgagttcaaggctcacctggtctactatctatagtgagttctaga-cagctagaactatgtagaaagaccttgtctcaaa--aaacaaaacaaaacaaaacaaaacaaaaATCCA i mm10.chr15 C 0 I 112 e dasNov3.JH570235 105006 1 + 1056298 I e canFam3.chr10 46122731 386 - 69331447 I e proCoq1.NW_012136747v1 5108075 89 - 6317780 I e micMur3.chr7 5744610 40 + 108171978 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I a score=534089.000000 s hg38.chr22_GL383582v2_alt 111835 56 + 162811 ggtgcctgcaacttcagctactcaggaggctgaggcaggagaattgcttgaacctg s panTro5.chr22 28891755 56 + 37823149 ggtgcctgcaacttcagctactcaggaggctgaggcaggagaattgcttgaacctg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166327 56 + 50109623 ggtgcctgcaacttcagctactcaggaggctgaggcaggagaattgcttgaacctg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189172 56 + 4464012 ggcgcctggaacttcagctactcaggaggctgaggcaggagaattgcttgaacctg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106684933 56 - 115148730 ggcgcctgtaacttcagctactcaggaggctgaggcaggagaattacttgaacctg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300471 56 + 92844088 ggcgcctgtaatttcagctactcaggaggctgaggcaggagaattgcttgaacctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87646833 56 - 96509753 ggcgcctgtaatttcagctactcaggaggctgaggcaggagaattgcttgaacctg i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4103594 56 - 4483953 ggcgcctgtaatttcagctactcaggaggctgaggcaggagaattgcttgaccctg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734315 56 + 33263144 ggcacctgtaatttcagctactcaggaggctgaggcaggagaattgcttgaacctg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14014926 56 - 14338769 ggcgcctgtaatttcagctactcaggaggctgaggcaggagaattgcttgaacttg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953200 56 + 1946073 ggcacctgtaatttcagttactcaggaggctgaggcaggagaattgcttgaacctg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1979861 56 - 2117846 ggtgcctataatcccagctactcaggaggctgaggcaggagaatttcatgaacctg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890635 56 - 16357246 ggtgcctgtaatcccagctactcaggaggctgaggcaggtgaattgcatgaaccca i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376391 56 - 1807191 ggcgcctgtaatcccagctactcaggaggctgaggcaggagaattgcatgaacctg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54478 56 + 5963231 ggcacctgtaatcccagctactcaggagactgaggcaggagaattgcatgaacctg i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36317285 56 - 42659167 tatacctgtagtctcagctacttggaaggctgagactggaggatggactgagatta i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82842105 112 + 104043685 I e dasNov3.JH570235 105006 1 + 1056298 I e canFam3.chr10 46122731 386 - 69331447 I e proCoq1.NW_012136747v1 5108075 89 - 6317780 I e micMur3.chr7 5744610 40 + 108171978 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I a score=523563.000000 s hg38.chr22_GL383582v2_alt 111891 68 + 162811 ggaggcgaaggtttcagtgagccgaaattgtgccattgcggtccagcctgggg----------ga-tagaggaagactc s panTro5.chr22 28891811 68 + 37823149 ggaggcgaaggtttcagtgagctgaaattgcgccattgcggtccagcctgggg----------ga-tagagcaagactc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166383 68 + 50109623 ggaggcgaaggtttcagtgagctgaaattgcgccattgcggtccagcctgggg----------ga-tagagcaagactc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189228 68 + 4464012 ggagccgaaggttgcagtgagctgaaattgcgccattgcagtccagcctgggc----------ga-tagagcaagactc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106684989 68 - 115148730 ggaggcggaggttgcagtgagccgaaattgcgccattgcactccagcctgggc----------ga-cagaacgagactc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300527 68 + 92844088 ggaggcgcaggttgcagtgagccgagatcacgccattgcactccagcctgggt----------ga-cagagcaagactc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87646889 68 - 96509753 ggaagcacaggttgcagtgagccgagatcacgccattgcactccagcctgggt----------ga-cagagcaagactc i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4103650 78 - 4483953 ggaggcgcaggttgcagtgagccgagatcacgccattgcactccagcctgggtgacagagcaaga-cagagcaagacac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734371 68 + 33263144 ggaggcggaggttgcagtgagccgagatcacgccattgcactccagcctgggt----------ga-cagagcaagactc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14014982 68 - 14338769 ggaggcgcaggttgcagtgagccaagatcacgccattgcactccagcctgggt----------ga-cagagcaagactc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953256 68 + 1946073 ggaggcggaggttgcagtgagctgagatcatgccattgcactccagcctgggt----------ga-cagagcaagactc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1979917 69 - 2117846 ggaggtggaggttgcagtgagccgagattgtgccactgcactccagcctgggc----------aattagggcaagactc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890691 69 - 16357246 ggaggtggaggttgcagtgagccgagattgtgccactgtactccagcctgggc----------aattagaacaagactc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376447 69 - 1807191 ggaggtggaggttgcagtgagcagagattgtgcaactgtactccagcctgggc----------aattagagcaagactc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54534 69 + 5963231 ggaggtggaggttgcagtgagctgagattgtgccactgtactccagcctgggc----------aattagagcaagactc i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82842105 112 + 104043685 I e dasNov3.JH570235 105006 1 + 1056298 I e canFam3.chr10 46122731 386 - 69331447 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5108075 89 - 6317780 I e micMur3.chr7 5744610 40 + 108171978 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I a score=134355.000000 s hg38.chr22_GL383582v2_alt 111959 37 + 162811 ---------agtctcaaaaaaaaa----acaaaaccaaaccaa----aaaaaCC s panTro5.chr22 28891879 41 + 37823149 ---------agtctcaaaacaaaacaaaacaaaacaaaaccaa----aaaaacC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166451 40 + 50109623 ---------agtctcaaaaaaaaacaaaacaaaacaaaacc-a----aaaaaCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189296 35 + 4464012 ---------agtctcaaaaaaa------acaaaacaaaaacaa----aaaaaCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685057 42 - 115148730 ---------agtctcaaaaagcaa---aacaaaacaaaagcaaaaaCAAAAACC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300595 36 + 92844088 ---------agtctcaaaaaacaa---aacaaaacaaaaac------aaaaaCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87646957 36 - 96509753 ---------agtctcaaaaaacaa---aacaaaacaaaaac------aaaaaCC i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4103728 36 - 4483953 ---------agtctcaaaaaacaa---aacaaaacaaaaac------aaaaaCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734439 36 + 33263144 ---------agtctcaaaaaacaa---aacaaaacaaaaac------aaaaaCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015050 36 - 14338769 ---------agtctgaaaaaacaa---aacaaaacaaaaac------aaaaaCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953324 36 + 1946073 ---------agtctcaaaaaacaa---aacaaaacaaaaac------aaaaaCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1979986 23 - 2117846 ---------agtctcaaacaaaca---aaaaa---------------aa----C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890760 27 - 16357246 ---------agtctcaaacaaaca---aacaa---------------aaaaaTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376516 23 - 1807191 ---------agtctcaaacaaaca---aaaaa---------------aa----C i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54603 26 + 5963231 ---------agtctcaaacaaaca---aacaa---------------aaaaa-C i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82842217 37 + 104043685 aattcccaggactgcaaagaaCAA---AACCAAGTAAAAC-------------- i mm10.chr15 I 112 C 0 e dasNov3.JH570235 105006 1 + 1056298 I e canFam3.chr10 46122731 386 - 69331447 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5108075 89 - 6317780 I e micMur3.chr7 5744610 40 + 108171978 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I a score=9661.000000 s hg38.chr22_GL383582v2_alt 111996 1 + 162811 C s panTro5.chr22 28891920 1 + 37823149 C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166491 1 + 50109623 C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189331 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685099 1 - 115148730 C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300631 1 + 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87646993 1 - 96509753 C i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4103764 1 - 4483953 C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734475 1 + 33263144 C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015086 1 - 14338769 C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953360 1 + 1946073 C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980009 1 - 2117846 T i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890787 1 - 16357246 C i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376539 1 - 1807191 C i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54629 1 + 5963231 T i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5744650 1 + 108171978 C i micMur3.chr7 I 40 C 0 s mm10.chr15 82842254 1 + 104043685 C i mm10.chr15 C 0 C 0 e dasNov3.JH570235 105006 1 + 1056298 I e canFam3.chr10 46122731 386 - 69331447 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5108075 89 - 6317780 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I a score=44139.000000 s hg38.chr22_GL383582v2_alt 111997 5 + 162811 AACTT s panTro5.chr22 28891921 5 + 37823149 AACTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166492 5 + 50109623 AACTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189332 5 + 4464012 AACTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685100 5 - 115148730 AACTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300632 5 + 92844088 AATTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87646994 5 - 96509753 AATTT i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4103765 5 - 4483953 AATTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734476 5 + 33263144 AGTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015087 5 - 14338769 AATTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953361 5 + 1946073 AACTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980010 5 - 2117846 ATCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890788 5 - 16357246 ACCTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376540 5 - 1807191 ACCTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54630 5 + 5963231 ATTTT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5744651 5 + 108171978 AACTT i micMur3.chr7 C 0 C 0 s mm10.chr15 82842255 5 + 104043685 AACTT i mm10.chr15 C 0 C 0 s dasNov3.JH570235 105007 5 + 1056298 AACTT i dasNov3.JH570235 I 1 C 0 e canFam3.chr10 46122731 386 - 69331447 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5108075 89 - 6317780 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I a score=700926.000000 s hg38.chr22_GL383582v2_alt 112002 70 + 162811 TACTACCAGGCAGATTCTTTTCTTTGGCTTTAGATAATCGCTATCAAAACTTTGTCATCTCACTAGAATG s panTro5.chr22 28891926 70 + 37823149 TACTACCAGGCAGACTCTTTTCTTTGGCTTTAGATAATCGCTATCAAAACTTTGTCATCTCACTAGAATG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166497 70 + 50109623 TACTACCAGGCAGACTCTTTTCTTTGGCTTTAGATAATCGCTATCAAAACTTTGTCATCTCACTAGAATG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189337 70 + 4464012 TACTACCAGGCAGACTCTTTTCTTTGGCTTTAGATAATCACTATCAAAACTTTGTCATCTCACTAGAATG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685105 70 - 115148730 TACTACCAGGCAGACTCTTTTCTTTGGCTTTAGATGATCGCTATCAAAACTTTGTCATCTCACTAGAATG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300637 66 + 92844088 TACTACCAGGTAGACTCG----TTTGGCTTTAGATAATCACTATCAAAACTTTGCCATTTCACTAAAATA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87646999 66 - 96509753 TACTACCAGGTAGACTCG----TTTGGCTTTAGATAATCACTATCAAAACTTTGCCATTTCACTAAAATA i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4103770 66 - 4483953 TACTACCAGGTAGACTCA----TTTGGCTTTAGATAATCACTATCAAAACTTTGCCATTTCACTAAAATA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734481 66 + 33263144 TACTACCAGGTAGACTCG----TTTGGCTTTAGATAATCACTATCAAAACTTTGCCATTTCACTAAAATA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015092 66 - 14338769 TACTACCAGGTAGACTCG----TTTGGCTTTAGATAATCACTATCAAAACTTTGCCATTTCACTAAAATA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953366 66 + 1946073 TACTACCAGGTAGACTCG----TTTGGCTTTAGATAATCACTATCAAAACTTTGCCATTTCACTAAAATG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980015 70 - 2117846 TACTTCCAGGCAGACTCTTTTCTTTGGCTTTAGATAATCACTATCAAAACTTTGTCATCTCACCACACTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890793 66 - 16357246 TATTTCCAGGTATACTCTTTTCTTTGGTTT----TAATCACTATCAAAACTTTGTCATCTCACTAGACTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376545 70 - 1807191 TACCTCCATGTAGACTCTCTTCTTTGGCTTTAGATAATCACTATCAAAACTCTGTCATCTCACTAGACTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54635 70 + 5963231 TACTTCCAGGCAGACTCTTTTCTTTGGCTTTAGATAATCACTATCAAAACTATGTCATCTCACTAGACTA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5744656 70 + 108171978 TATTATTAGGCAGACTCTTAACTTTGGCTTTAAGTAATCACTATCAAAAATTTACCAACACACACGACTA i micMur3.chr7 C 0 C 0 s mm10.chr15 82842260 66 + 104043685 CAGTATCAGGCAGGCTCTATTCATT---CTTTGGTAGTCACTCTCAAAA-TTTGCCAACTCACAAGCATA i mm10.chr15 C 0 I 100 s canFam3.chr10 46123117 69 - 69331447 TATTACTGGCTAGACTCTCTACTTTGGCCTTAGGTAATCACTATAAAAAATG-ACCAACTCACAAGAACA i canFam3.chr10 I 386 C 0 s dasNov3.JH570235 105012 70 + 1056298 TATTACTGGCTAGATTCTTTCATTTAGCCTCAGGTATTTCCTATCAAAAATTTAACAACTTAAAAGAATA i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5108075 89 - 6317780 I e macNem1.NW_012012688v1 7138675 5393 - 13098629 I a score=793168.000000 s hg38.chr22_GL383582v2_alt 112072 71 + 162811 TTAATGCTTTTACTTAACATGCAAGGTAGATTTTAGTCCCTCCC-TTTTGCCTTC-TGTCTTTTGAGAG--ATAT s panTro5.chr22 28891996 71 + 37823149 TTAATGCTTTTACTTAACATGCAAGGTAGATTTTAGTCCCTCCC-TTTTGCCTTC-TGTCTTTTGAGAG--ATAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166567 71 + 50109623 TTAATGCTTTTACTTAACATGCAAGGTAGATTTTAGTCCCTCCC-TTTTGCCTTC-TGTCTTTTGAGAG--ATAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189407 71 + 4464012 TTAATGCTTTTACTTAACATGCAAGGTAGATTTTAGTCCCTCCC-TTTTGCCTTC-TGTCTTTTGAGAG--ATAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685175 71 - 115148730 TTAATGCTTTTATTTAACATGCAAGGTAGATTTTAGTCCCTCCC-TTTTGCCTTC-TGTCTTTTGAGAG--ATAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300703 66 + 92844088 TTAATGCTTTTACTTAACATGCAAGGTAGATTTTATTCCCTCCC-TTTTGCCTTC-TCTCTC--GAGAGA----- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647065 66 - 96509753 TTAATGCTTTTACTTAACATGCAAGGTAGATTTTATTCCCTCCC-TTTTGCCTTC-TCTCTC--GAGAGA----- i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4103836 65 - 4483953 TTAATGCTTTTACTTAACATGCAAGGTAGATTTTATTCCCTCCC-TTTTCCCTTC-TCTCGA--GAGAG------ i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734547 67 + 33263144 TTAATGCTTTTACTTAACATGCAAGGTAGATTTTATTCCCTCCC-TTTTGCCTTC-TCTCTTGAGAGAG------ i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015158 65 - 14338769 TTAATGCTTTTACTTAACATGCAAGGTAGATTTTATTCCCTCCC-TTTTGCCTTC-TCTCTC--GAGAG------ i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953432 66 + 1946073 TTAATGCTTTTACTTAACATGCAAGGTAGATTTTATTCCCTCCC-TTTTGCCTTC-TCTCTC--GAGAG-A---- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980085 69 - 2117846 TTAATGCTTTTACCTGACATGCAAGGTAGATTTTATTCCCTCCC-TTTTGCCTCC-GCTCCTTTCAGAG--TG-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890859 71 - 16357246 TTAATGCTTTTACTTAACATGCAAGGTAGATTTTATTCCCTCCC-TTTTGCCTCC-TCTCCTTTGAGAG--AGAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376615 71 - 1807191 TTAATGCTTTTACTTAACATGCAAGGTAGATTTTATTCCCTCCC-TTTTGCCTCC-TCTCCTTTGAGAG--ATAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54705 71 + 5963231 TTAATGCTTTTACTTAACATGCAAGGTAGATTTTATTCCCTCCC-TTTTGCCTCC-TCTCCTTTGAGAG--ATAT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5744726 66 + 108171978 TTAATGCTTTTACTTTATGTGCAAGGCAAATTTTATTCCTTTCC-TTTTGCCTTC-TCTCCTTTGAAG------- i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5108164 66 - 6317780 TTAATGCTTTTACTTTATGTGCAAGGCAAATTTTATTCCCTTCC-TTTTGCCTTC-TCTCCTTTGAAG------- i proCoq1.NW_012136747v1 I 89 C 0 s mm10.chr15 82842426 61 + 104043685 TTCATGTTTTTACTTAGCGTACAAGGCAGATTTCATCCCCTTCC-TTTTG-----------TTCGAAGA--AAAT i mm10.chr15 I 100 C 0 s canFam3.chr10 46123186 72 - 69331447 TTAATGCTTTTACTTAATGTACAAGGCAGATTTTATTCCCTTCC-TTCTGCCTCCTTTTCCTTTGAACG--ATCT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 105082 72 + 1056298 TTAATGTTTCTTCTTAATGTACAAGGCAGACTTTATTCCCTCCCTTTTTGTCCTT-TATCCTGTGAAGA--ATCT i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36317341 0 - 42659167 C e macNem1.NW_012012688v1 7138675 5393 - 13098629 I a score=1598366.000000 s hg38.chr22_GL383582v2_alt 112143 128 + 162811 AATTCCT-GAGTGTGTTCGTGTTGGCTGATGCTATTTCATAAGACATAATATTAATACTG-CACCTGAAATACCTCACACCCTGCCACC---CTT--CCCCCC-GCAGCAAACTTGAGTTT-CCAACAAGAGTAAA---A--- s panTro5.chr22 28892067 128 + 37823149 AATTCCT-GAGTGTGTTCGTGCTGGCTGATGCTATTTCATAAGACATAATATTAATACTG-CACCTGAAATACCTCACACCCTGCCACC---CTT--CCCCCT-GCAGCAAACTTGAGTTT-CCAACAAGAGTAAA---A--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166638 128 + 50109623 AATTCCT-GAGTGTGTTCGTGCTGGCTGATGCTATTTCATAAGACATAATATTAATACTG-CACCTGAAATACCTCACACCCTGCCACC---CTT--CCCCCT-GCAGCAAACTTGAGTTT-CCAACAAGAGTAAA---A--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189478 129 + 4464012 AATTCCT-GAGTGTGTTCGTGTTGGCTGATGCTATTTCATAAGACATAATATTAATACTG-CACCTGAAATACCTCACACCCTGCCACC---CTT--CCCCCCAACAGCAAACTGGAGTTT-CCAACAAGAGTAAA---A--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685246 128 - 115148730 AATTCCT-GAGTGTATTCGTGTTGGCTGATGCTCTTTCGTAAGACATAATATTAATACTG-CACCTGAAATACCTCATACCCTGCCACC---CTT--CTCCCC-ACAGCAAACTTGAGTTT-CCAACAAGAGTAAA---A--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300769 130 + 92844088 -ATTCCT-GAGTGTGTTCGTGTTGGCTGATGCTATTTCATAAGACATAATATTAATACTG-CACCTGAAATACCTCACCCCCTGCCACCACCCTT--CCCCCC-GCAGCAAACTTGAGTTT-CCAACAAGAGTAAA---A--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647131 130 - 96509753 -ATTCCT-GAGTGTGTTCGTGTTGGCTGATGCTATTTCATAAGACATAATATTAATACTG-CACCTGAAATACCTCACCCCCTGCCACCACCCTT--CCCCCC-GCAGCAAACTTGAGTTT-CCAACAAGAGTAAA---A--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7144068 131 - 13098629 AATTCCT-GAGTGTGTTCGTGTTGGCTGATGCTATTTCATAAGACATAATATTAATACTG-CACCTGAAATACCTCACCCCCTGCCACCACCCTT--CCCCCC-GCAGCAAACTTGAGTTT-CCAACAAGAGTAAA---A--- i macNem1.NW_012012688v1 I 5393 C 0 s cerAty1.NW_011999588v1 4103901 131 - 4483953 AATTCCT-GAGTGTGTTCGTGTTGGCTGATGCTATTTCATAAGACATAATATTAATACTG-CACCTGAAATACCTCACCCCCTGCCACCACCCTT--CCCCCC-GCAGCAAACTTGAGTTT-CCAACAAGAGTAAA---A--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734614 131 + 33263144 AATTCCT-GAGTGTGTTCGTGTTGGCTGATGCTATTTCATAAGACGTAATATTAATACTG-CACCTGAAATACCTCACCCCCTGCCACCACCCTT--CCCCCC-GCAGCAAACTTGAGTTT-CCAACAAGAGTAAA---A--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015223 131 - 14338769 AATTCCT-GAGTGTGTTCGTGTTGGCTGATGCTATTTCATAAGACATAATATTAATACTG-CACCTGAAATACCTCACCCCCTGCCACCACCCTT--CCCCCC-GCAGCAAACTTGAGTTT-CCAACAAGAGTAAA---A--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953498 127 + 1946073 -ATTCCT-GAGTGTGTTCGTGTTGGCTGATGCTATTTCATAAGACATAATATTAATACTG-CACCTGAAATACCTCATACCCTGTCACCA---TT--CCCCCC-GCAGCAAACTTGAGTTT-CCAACAAGAGTAAA---A--- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980154 116 - 2117846 ---------------TTGATATTGGCTGATGCTATTTCATAAGACATAA-ATTAATGTTG-CACCTGAAATACCTCACACCCTGCCACC---CTT--CCTCCT-GCAGCAAACTTGAGTTT-CCAACAAGAGTAAAAAGA--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8890930 123 - 16357246 AATTCCT--------TAGATATTGGCTGATGCTATTTCGTAAGACATAA-ATTAATAACA-CACCTGAAATACCTCACATCCTGCTACC---CTT--CCCCCT-GCAGCAAACTTGAGTTT-CCAACAAGAGTAAAAACA--- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376686 126 - 1807191 AATTCCT-GAGAGTGTTCATATTGGCTGATGTTATTTCATAAAACATAA-ATTAATATCGCCCCCTGAAATATCTCACACCCTGCCACC---CTT--CCCCCT-CCCGAAAACTTGAGTTT-CCAACAAGAGTAA-------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54776 132 + 5963231 AATTCCT-GAGAGTGTTCATATTGGCTGATGCTATTTCATAAGACATAA-ATTAATATTG-CACCTGAAATACCTCACACTCTGCCACC---CTTCCCCCCCT-GCAGCAAACTTGAGTTT-CCAACAAGAGTAAAAACA--- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5744792 118 + 108171978 AATTCCT-GAAAGTGTCCATGTTGGCTGATACTATTTCTTAAGACATAA-ACTAATACTG-TACTTGAAATACCCTATACCTTGCCA-C--------CCTCCC------AAACTTGAGTTT-CCGACAAGAGTAAA---A--- i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5108230 119 - 6317780 AATTGCT-GAAAGTGTCCACGTTGGTTGATACTATTTCTTAAGACATAA-ACTAATACTG-TACCTGCAATACCCTATACCCTGCCACC--------CCTCCC------AAACTTGAGTTT-CCAACAAGAGTAAA---A--- i proCoq1.NW_012136747v1 C 0 I 24 s mm10.chr15 82842487 100 + 104043685 ----------------GCATGTTGACCAATGCTATTTCTTAAATTACAG-ATTGATACTC-CACCTGAAA--------ATCATGCTCCG---GTC--CCTCCC------AAACCTAAGTTTACTTACATGAACAAA---A--- i mm10.chr15 C 0 I 6 s canFam3.chr10 46123258 116 - 69331447 AACTCCT-GAGGATGTCTGTGTGGGCTGCTGCTAGATCCTAAGATGCTA-ATTAATACTG-CCCCTTAAATACCACACACCCTGC---------T--CCCCTC------AAACTTGAGTTT-CCCATAAGAATAAA---A--- i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 105154 126 + 1056298 AATTCCTTGAGAGTGTCTGTATGGGTTAATGCTACTTCACAATA------ATTAATATTG-CACCTTAAATACCACAAACCCTGCCTCT---CCA--CCCCAT-GACACAAATTTTAGTTT-CCCGCAAGAGTAAA---ATGA i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36317341 0 - 42659167 C a score=147071.000000 s hg38.chr22_GL383582v2_alt 112271 11 + 162811 AGGAGATAATG s panTro5.chr22 28892195 11 + 37823149 AGGAGATAATG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166766 11 + 50109623 AGGAGATAATG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189607 11 + 4464012 AGGAGATAATG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685374 11 - 115148730 AGGAGAAAATG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300899 11 + 92844088 AGGAGAAAATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647261 11 - 96509753 AGGAGAAAATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7144199 11 - 13098629 AGGAGAAAATG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4104032 11 - 4483953 AGGAGAAAATG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734745 11 + 33263144 AGGAGAAAATG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015354 11 - 14338769 AGGAGAAAATG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953625 11 + 1946073 AGGAGAAAATG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980270 11 - 2117846 AGGAGAAAATG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8891053 11 - 16357246 AGGAGAAAATG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376812 6 - 1807191 -----AAAATG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54908 11 + 5963231 AGGAGAAAATG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5744910 11 + 108171978 ATGAGAAAATA i micMur3.chr7 C 0 I 10 s mm10.chr15 82842593 8 + 104043685 ---AGAAAATA i mm10.chr15 I 6 I 1 s canFam3.chr10 46123377 11 - 69331447 AAAAGAAAATG i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 105280 11 + 1056298 GGGAGGAAATG i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5108349 24 - 6317780 I a score=104198.000000 s hg38.chr22_GL383582v2_alt 112282 15 + 162811 TTTTTATTTCCACCA s panTro5.chr22 28892206 15 + 37823149 TTTTTATTTCCACAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166777 15 + 50109623 TTTTTATTTCCACAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189618 15 + 4464012 TTTATATTTCCACAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685385 15 - 115148730 TTTTTATTTCCACAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300910 15 + 92844088 TTTATATTTCCACAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647272 15 - 96509753 TTTATATTTCCACAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7144210 15 - 13098629 TTTATATTTCCACAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4104043 15 - 4483953 TTTATATTTCCACAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734756 15 + 33263144 TTTATATTTCCACAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015365 15 - 14338769 TTTATATTTCCACAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953636 15 + 1946073 TTTATATTTCCACAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980281 14 - 2117846 TTTAT-TTTTCACAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8891064 14 - 16357246 TTTAT-TTTCCATAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376818 14 - 1807191 TTTAT-TTTCCATAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54919 14 + 5963231 TTTAT-TTTTCATAC i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82842602 12 + 104043685 CTTAT---CCAATAT i mm10.chr15 I 1 I 1 s canFam3.chr10 46123388 12 - 69331447 ---GTTGTTTCATAT i canFam3.chr10 C 0 I 2 s dasNov3.JH570235 105291 14 + 1056298 CTTAC-TTCTTATGT i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5108349 24 - 6317780 I e micMur3.chr7 5744921 10 + 108171978 I a score=1117130.000000 s hg38.chr22_GL383582v2_alt 112297 106 + 162811 AGGACAACTT-----TC----A-----AAGAGATTAAGTTCTGAACACCCCTGGCAAGATGAGCTAGC--TGCACTATGATGGAACTACAACATAAGCTAT--AGAGTACTGAGTGAGCTTGCT s panTro5.chr22 28892221 106 + 37823149 AGGACAACTT-----TC----A-----AAGAGATTAAGTTCTGAACACCCCTGGCAAGATGAGCTAGC--TGCACTATGATGGAACTACAACATGAGCTAT--AGAGTACTGAGTGAGCTTGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166792 106 + 50109623 AGGACAACTT-----TC----A-----AAGAGATTAAGTTCTGAACACCCCTGGCAAGATGAGCTAGC--TGCACTATGATGGAACTACAACATGAGCTAT--AGAGTACTGAGTGAGCTTGCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189633 106 + 4464012 AGGACAACTT-----TC----A-----AAGAGATTAAGTTCTGGGCACCCCTGGCAAGATGAGCTAGC--TGCACTATGATGGAACTACAACATGAGCTAT--AGAGTACTGAGTGAGCTTGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685400 106 - 115148730 AGGACAACTT-----TC----A-----AAGAGATTAAGTTCTGAACACCCCTGGAAAGATTAGCTAGC--TGCACTATGATGGAACTACAACATGAGCTAT--AGAGTACTGAGTGAGCTTGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84300925 106 + 92844088 AGGACAACTT-----TC----A-----AAGAGATTAAGTTCTGAACACCCCTGGAAAGATTAGCTAGC--TGCACTACGATGGAACTACAACATGAGCTCC--AGAGTACTGAGTGAGCTTGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647287 106 - 96509753 AGGACAACTT-----TC----A-----AAGAGATTAAGTTCTGAACACCCCTGGAAAGATTAGCTAGC--TGCACTACGATGGAACTACAACATGAGCTCC--AGAGTACTGAGTGAGCTTGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7144225 106 - 13098629 AGGACAACTT-----TC----A-----AAGAGATTAAGTTCTGAACACCCCTGGAAAGATTAGCTAGC--TGCACTATGATGGAACTACAACATGAGCTCC--AGAGTACTGAGTGAGCTTGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4104058 106 - 4483953 AGGACAACTT-----TC----A-----AAGAGATTAAGTTCTGAACACCCCTGGAAAGATTAGCTAGC--TGCACTACGATGGAACTACAACATGAGCTCC--AGAGTACTGAGTGAGCTTGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734771 106 + 33263144 AGGACAACTT-----TC----A-----AAGAGATTAAGTTCTGAACACCCCTGGAAAGATTAGCTAGC--TCCACTACGATGGAACTACAACATGAGCTCC--AGAGTACTGAGTGAGCTTGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015380 106 - 14338769 AGGACAACTT-----TC----A-----AAGAGATTAAGTTCTGAACACCCCTGGAAAGATTAGCTAGC--TGCACTACGATGGAACTACAACATGAGCTCC--AGAGTACTGAGTGCGCTTGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953651 106 + 1946073 AGGACAACTT-----TC----A-----AAGAGATTAAGTTCTTAACACCCCTGGAAAGATTAGCTAGC--TGCACTACGATGGAACTACAACATGAGCTCC--AGAGTACTGAGTGAGCTTGCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980295 91 - 2117846 AGGACAACTC-----TCTTTGA-----AGGAGAATGAGTTCTGAACACCCCTGGGAAGAT------------CACTAGGAT-GAACTATAACAGGAACT----------CTGAATAAGCTTGCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8891078 95 - 16357246 AGGACAACTT-----TC----A-----AAGAGAGTAATTTCTGAACACCCCTGGGAAGAT------------CACTAGGAT-GAACTACAACAGGAACTCC--AGAGTACTGAATAAGCTTGCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376832 95 - 1807191 AGGACAACTT-----TC----A-----AAGACAGTAAGTTCTGAACACCCCTGGGAAGAT------------CACTAGGAT-GAACTACAACAGGAACTCC--AGAGTGCTAAATAAGCTTGTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 54933 95 + 5963231 AGGACAACTT-----TC----A-----AAGAGAGTAAGTTCTGAATACCCCTGGGAAGAT------------CACTAGGAT-GAACTACAACAGGAACTCC--AGCGTACTGAATAAGCTTGCT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5744931 103 + 108171978 AGGACAATTT-----TT----C--------AGAATAAGTTCTGAAAACTCCTGGGAAGATCCACTAAC--CGCATTAGGCTGGAACTCTCATACAAGCTAC--AGCTTCCAGACTGAGCTTACT i micMur3.chr7 I 10 C 0 s proCoq1.NW_012136747v1 5108373 111 - 6317780 AGGACAATTT-----TT----CTATCAAAGAGAGTAAGTTATGAAAACTCCTGGGAAGATCCACTAAC--TGTACTAGGATGGAACTATCATACAAGCTAC--AGCTTCCCGAGTGAGCTTATT i proCoq1.NW_012136747v1 I 24 C 0 s mm10.chr15 82842615 75 + 104043685 CAAACTATTT---TATC----A-----AAGAGATTGAGTTTTGGAGATTCTTGGA-------------------------------------ATGAGCTCCTGAGAACACAAAGTGAGCACTCT i mm10.chr15 I 1 C 0 s canFam3.chr10 46123402 81 - 69331447 AGGGCAACTT-----GC----C-------------------------TCTCTGGGAAGAAGCGCTAGT--TGTGCTGGCATGGAATGAC-ACACGAGCTAC--GGCTCACCAAGAGAGC----T i canFam3.chr10 I 2 C 0 s dasNov3.JH570235 105305 110 + 1056298 AAGGCAACATTCCTATC----A-----AAGAGAA-AAGTTCTGGACATTCCTAGGAAGAACCAATAATAATGCACTAGGATGGAATGAGaataaaaactat--agtttatcaagt--gtttgct i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36317341 0 - 42659167 C a score=66654.000000 s hg38.chr22_GL383582v2_alt 112403 6 + 162811 AACAGG s panTro5.chr22 28892327 6 + 37823149 AACAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166898 6 + 50109623 AACAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189739 6 + 4464012 AACAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685506 6 - 115148730 AACGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84301031 6 + 92844088 AACAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647393 6 - 96509753 AACAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7144331 6 - 13098629 AACAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4104164 6 - 4483953 AACAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734877 6 + 33263144 AACAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015486 6 - 14338769 AACAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953757 6 + 1946073 AACAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980386 6 - 2117846 AATGAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8891173 6 - 16357246 AATGAA i saiBol1.JH378157 C 0 I 313 s cebCap1.NW_016107750v1 1376927 6 - 1807191 AATGAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 55028 6 + 5963231 AATGAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5745034 6 + 108171978 AACAGG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5108484 6 - 6317780 AACAGG i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82842690 6 + 104043685 AATTAA i mm10.chr15 C 0 I 1 s canFam3.chr10 46123483 6 - 69331447 AACAGG i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 105415 0 + 1056298 C e otoGar3.GL873526 36317341 0 - 42659167 C a score=233089.000000 s hg38.chr22_GL383582v2_alt 112409 17 + 162811 AACACATCTTTACTAAG s panTro5.chr22 28892333 17 + 37823149 AACACATCTTTACTAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166904 17 + 50109623 AACACATCTTTACTAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189745 17 + 4464012 AACACATCTTTATTAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685512 17 - 115148730 AACACATCTTTACTAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84301037 17 + 92844088 AACACATCTTTACTAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647399 17 - 96509753 AACACATCTTTACTAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7144337 17 - 13098629 AACACATCTTTACTAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4104170 17 - 4483953 AACACATCTTTACTAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734883 17 + 33263144 AACACATCTTTACTAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015492 17 - 14338769 AACACATCTTTACTAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953763 17 + 1946073 AACACATCTTTACTAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980392 16 - 2117846 AACACATCTTTACTAA- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8891492 16 - 16357246 AACACATCTTTACTAA- i saiBol1.JH378157 I 313 C 0 s cebCap1.NW_016107750v1 1376933 16 - 1807191 AACATGCCTTTACTAA- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 55034 16 + 5963231 AACACATCTTTACTAA- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5745040 17 + 108171978 AACACATCTTCACTGAG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5108490 17 - 6317780 AGCACATCTTCACTGAG i proCoq1.NW_012136747v1 C 0 I 49 s mm10.chr15 82842697 17 + 104043685 AACATATCTTTACTGAA i mm10.chr15 I 1 C 0 s canFam3.chr10 46123489 17 - 69331447 AACACATCTCCACTAGA i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 105415 0 + 1056298 C e otoGar3.GL873526 36317341 0 - 42659167 C a score=584964.000000 s hg38.chr22_GL383582v2_alt 112426 53 + 162811 ACAACAATGAGGGAGGACACCATCTGAGGGCGGTCACCAGTCTGCAGCTTGCA s panTro5.chr22 28892350 53 + 37823149 ACAACAATGAGGGAGGACACCATCTGAGGGCGGTCACCAGTCTGCAGCTTGCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166921 53 + 50109623 ACAACAATGAGGGAGGACACCATCTGAGGGCGGTCACCAGTCTGCAGCTTGCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189762 53 + 4464012 ACAACAATGAGGGAGGACACCATCTGAGGGCAGTCACCAGTCTGCAGCTTGCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685529 53 - 115148730 ACAGCAATGAGGGAGGACACCATCTGAGGGCGGTCACCAGCCTGCAGTTTGCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84301054 53 + 92844088 ACAACAATGAGGGAGGACACCATCTGAGGGTGGACACCAGTCTGCAGTTTGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647416 53 - 96509753 ACAACAATGAGGGAGGACACCATCTGAGGGTGGACACCAGTCTGCAGTTTGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7144354 53 - 13098629 ACAACAATGAGGGAGGACACCATCTGAGGGTGGACACCAGTCTGCAGTTTGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4104187 53 - 4483953 ACAACAATGAGGGAGAACACCATCTGAGGGTGGACACCAGTCTGCAGTTTGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734900 53 + 33263144 ACGACAATGAGGGAGGACACCATCTGAGGGTGGACACCAGTCTGCAGTTTGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015509 53 - 14338769 ACAACAATGAGGGAGGACACCATCTGAGGGTGGACACCAGTCTGCAGTTTGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953780 53 + 1946073 ACGACAATAAGGGAGGACACCATCTGAGGGTGGACACCAGTCTGTAGTTTGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980408 51 - 2117846 --AACAACTAGGGAGGACACCATCTGATGGTGGACACCAGTCTGCAGTTCGCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8891508 51 - 16357246 --AACAACGAGGGAGGACACCATCTGATGGTGGACACCAGTCTGCAGTTCGCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1376949 51 - 1807191 --AACAATGAGGGAGGACACCATCTGATGGTGGACACCAGTCTGCAGTTCGCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 55050 51 + 5963231 --AACAACTAGGGAGGACACCATCTGATGGTGGACACCAGTCTGCAGTTTGCA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5745057 48 + 108171978 -----AATGTGTGAGGACACTGTCTGAGGGCAGACACCAGCCCACAGTGTACA i micMur3.chr7 C 0 I 1 s mm10.chr15 82842714 36 + 104043685 ---------------GCCACATTATGAAGGCAGACACTAGTCCTCA--TGACA i mm10.chr15 C 0 I 2 s canFam3.chr10 46123506 42 - 69331447 ------ACACGTAAGGACACTACCCTAGGGCAGATGCTGGCCCATAGC----- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 105415 0 + 1056298 C e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5108507 49 - 6317780 I a score=340985.000000 s hg38.chr22_GL383582v2_alt 112479 28 + 162811 TTTCCTCTGAAACCACCT--------AACTGTTGAA s panTro5.chr22 28892403 28 + 37823149 TTTCCTCTGAAACCACCT--------AACTGTTGAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41166974 28 + 50109623 TTTCCTCTGAAACCACCT--------AACTGTTGAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189815 28 + 4464012 TTTCCTCTGAAACCACCT--------AACTGTTGAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685582 28 - 115148730 TTTCCTCTGAAACCACCT--------AACTGTTGAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84301107 28 + 92844088 TTTCCTCTGAAACCACCT--------AACTGTTGAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647469 28 - 96509753 TTTCCTCTGAAACCACCT--------AACTGTTGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7144407 28 - 13098629 TTTCCTCTGAAACCACCT--------AACTGTTGAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4104240 28 - 4483953 TTTCCTCTGAAACCACCT--------AACTGTTGAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734953 28 + 33263144 TTTCCTCTGAAACCACCT--------AACTGTTGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015562 28 - 14338769 TTTCCTCTGAAACCACCT--------AACTGTTGAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953833 28 + 1946073 TTTCCTCTGAAACCACCT--------AACTGTTGAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980459 29 - 2117846 TTTCCTCTGAAACCATCTC-------AACCGTTGAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8891559 29 - 16357246 TTTCCTCTGAAACCATCTC-------AACCTTTGAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1377000 28 - 1807191 TTT-CTGTGAAACCATCTC-------AACTGTTTAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 55101 29 + 5963231 TTTCCTCTGAAACCATCTC-------AACCGTTGAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5745106 29 + 108171978 TTTCCTTTAAAACCACCTC-------CACTGCTGAA i micMur3.chr7 I 1 C 0 s proCoq1.NW_012136747v1 5108556 29 - 6317780 TTTCCTTTAAAACCACCTC-------CACTGCTGAA i proCoq1.NW_012136747v1 I 49 C 0 s mm10.chr15 82842752 36 + 104043685 TTTTCTTTAAAACCACATTTTCTTTGAAGTGTTGGA i mm10.chr15 I 2 C 0 e dasNov3.JH570235 105415 0 + 1056298 C e canFam3.chr10 46123548 0 - 69331447 C e otoGar3.GL873526 36317341 0 - 42659167 C a score=1977487.000000 s hg38.chr22_GL383582v2_alt 112507 148 + 162811 atgtgccaaacactgctctaag----------------------------------------------------------------------cactttccaaagagcaacacatttaatcctcctaacatacctcttta-ctgtaggtgctgtcagttttcatactttgtatggtaaggacagtgaagcacagag--gttaagtgacttgagctagtgacc s panTro5.chr22 28892431 148 + 37823149 atgtgccaaacactgctctaag----------------------------------------------------------------------cactttccaaagagcaacacatttaatcctcctaacatacctcttta-ctgtaggtgctgtcagttttcatactttgtatggtaaggacagtgaagcacagag--gttaagtgacttgagctagtgacc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41167002 148 + 50109623 atgtgccaaacactgctctaag----------------------------------------------------------------------cactttccaaagagcaacacatttaatcctcctaacatacctcttta-ctgtaggtgctgtcagttttcatactttgtatggtaaggacagtgaagcacagag--gttaagtgacttgagctagtgacc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189843 148 + 4464012 atgtgccaaacactgctctaag----------------------------------------------------------------------caccttccgaagagcaacacatttaatcctcctaacatacctcttta-ctgtaggtgctgtcagttttcatactttgtatggtaaggacagtgaagcacagag--gttaagtgacttgagctagtgacc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685610 142 - 115148730 atgtgccaaacactgccctaag----------------------------------------------------------------------cactttccaaagagcaacacatttaa---tcctaacattcctcttta-ctgtaggtgctgtcagttttcatactttgta---taagcacagtgaagcacagag--gttaagtgacttgagctagtgacc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84301135 148 + 92844088 atgtgccaaacactgctctaag----------------------------------------------------------------------cactttccaaagagtaacacatttaatcctcctaacattcccgttta-ctgtaggtactgttagatttcatactttgtatgatgaggacagtgaagcacagag--gttaagtgacttgagctactgacc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647497 148 - 96509753 atgtgccaaacactgctctaag----------------------------------------------------------------------cactttccaaagagtaacacatttaatcctcctaacattcccgttta-ctgtaggtactgttagatttcatactttgtatgatgaggacagtgaagcacagag--gttaagtgacttgagctactgacc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7144435 148 - 13098629 atgtgccaaacactgctctaag----------------------------------------------------------------------cactttccaaagagtaacacatttaatcctcctaacattcccgttta-ctgtaggtactgttagatttcatactttgtatgatgaggacagtgaagcacagag--gttaagtgacttgagctactgacc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4104268 148 - 4483953 atgtgccaaacactgccctaag----------------------------------------------------------------------cactttccaaagagtaacacatttaatcctcctaacattcccgttta-ctgtaggtactgtcagatttcatactttgtatgatgaggacagtgaagcacagag--gttaagtgacttgagctactgacc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24734981 148 + 33263144 atgtgccaaacactgctctaag----------------------------------------------------------------------cactttccaaagagtaacacatttaatcctcctaacattcccgttta-ctgtaggtactgtcagatttcatactttgtatgatgaggacagtgaagcacagag--gttaagtgacttgagctactgacc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015590 148 - 14338769 atgtgccaaacactgccctaag----------------------------------------------------------------------cactttccaaagagtaacacatttaatcctcctaacattcccgttta-ctgtaggtactgtcagatttcatactttgtatgatgaggacagtgaagcacagag--gttaagtgacttgagctactgacc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 953861 148 + 1946073 atgtgccaaacactgctctaag----------------------------------------------------------------------cactttccaaagagtaacacatttaatcctcctaacattcctgttta-ctgtaggtgctgtcagatttcatactttgtatgaggaggacagtgaagcacagag--gttaagtgacttgagctactgacc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980488 148 - 2117846 atgtgccaaatactgctctaag----------------------------------------------------------------------cactttccaaagagtattacatttaatccttctaacatccctcttta-ctgtaggtgctgtcggttttcatactttgtatgatgaggacagtgaagcacagag--gttaagtgacttaagctagtgacc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8891588 148 - 16357246 atgtgccaaatactgctctaag----------------------------------------------------------------------cactttccaaagagtattacatttaatcctcctaacatccctcttta-ctgtaggtgctgttggttttcatactttgtatgatgaggacagtgaagcacagag--gttaagtgtcttaagctagtgacc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1377028 148 - 1807191 atgtgccaaatactgctctaag----------------------------------------------------------------------cactttccaaagggtattacatttaatcctcctagcatccctcttta-ctgtaggtgctgtcggttttcatactttgtatgatgaggacagtgaagcacagag--gttaagtgacttaagctagtgacc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 55130 148 + 5963231 atgtgccaaatactgctctaag----------------------------------------------------------------------cactttccaaagagtattacatttaatcctcctaacatccctcttta-ctgtaggtgctgtcggttttcatactttgtatgatgagaatagtgaagcacagag--gttcagtgacttaagctagtgacc i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5745135 147 + 108171978 atgagccaaacatttctctaag----------------------------------------------------------------------cactttccaaagagtaactcatttaatgttccaaacaaccctcttta-tagtaggtgctgtcattttttctgtttcgta-gatgaggaaaatgaagcacagac--gttaagtgacttgagcaagtgacc i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5108585 147 - 6317780 atgagccaaacatttctctaag----------------------------------------------------------------------cactttccacagagtaactcatttaatgatcctaacaaccctctttg-cagtaggtgctgtcagttttcctgttttgta-gatgaggaaaatgaagcacagag--gttaagtgacttgagcaagtgacc i proCoq1.NW_012136747v1 C 0 I 203 s mm10.chr15 82842788 199 + 104043685 ATGTGCCAAGTATTTC-CAAAGAGTAACTTTTTTCCTGTTGTTGGGGATGGAACTTGGGGGTCTTGCACGCGCTCCCACAGAGGTAGGTCTCCAGTCTTCAAAGAGT-----ACTTAATGCTTACTACAGCCTGCCTTAGAAGCTAGCACTCTAAGCTTCCATGTGTTGCA-AGTAAGAAGAGTAAAATACAGAGAAATTGAGTGA--------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46123548 142 - 69331447 ACTTGCCCAACATTTCTCTATG----------------------------------------------------------------------TCCTTTCCAAAGAGT----CATTCAG-GCTACTaacaaccattttta-cagtagacactctcagtttccagattttata-gatgaaaaaggtaaagcacagag--tctaagtgccttgagcacatgacc i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 105415 131 + 1056298 atgtgccaaacattgcccaaca-----------------------------------------------------------------------------------gtaattcagtaaa-actcatgacaaccctcttta-cagtaggtactgt----ttccttattttgta-gatgagaaaagtcaagtagagagaggttaagtgacttaagcaagtgaca i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36317341 0 - 42659167 C a score=1299588.000000 s hg38.chr22_GL383582v2_alt 112655 107 + 162811 tcgcaaggaaacaacaagtcctggaattcatatgaagcagtgtgactctggggctcTCACCCAGGCCTCCCCTCTACACAGCTGTTGAGGAGAACGGCA------------AAAGCCAG---------------------------- s panTro5.chr22 28892579 107 + 37823149 tcgcaaggaaaccacaagtcctggaattcatatgaagcagtgtgactctggggctcTCACCCAGGCCTCCCCTCTACACAGCTGTTGAGGAGAACGGCA------------AAAGCCAG---------------------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41167150 107 + 50109623 tcgcaaggaaaccacaagtcctggaattcatatgaagcagtgtgactctggggctcTCACCCAGGCCTCCCCTCTACACAGCTGTTAAGGAGAACGGCA------------AAAGCCAG---------------------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3189991 107 + 4464012 tcgcaaggaaacaacaagtcctggaattcatatgaagcagtgtgactctggggctcTCACCCAGGCCTCCCCTCTACACAGCTGTTGAGGAGAACGGCA------------AAAGCCAG---------------------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685752 107 - 115148730 tggcaaggaaacagcaagtcctggaattcatatgaagcagtgtgactctggggctctcacccaGGCCTCCCCTCTACACAGCTGTTGAGCAGAACGGCA------------AAAGCCAG---------------------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84301283 107 + 92844088 cagcgaggaaacagcaagtcctggaactcatatgaagcagtgtgactGTGGGGCTCTCACCCAGGCCTCCCCACTACACAGCTGTTGGGCAGAACGGCA------------AAAGCCAG---------------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647645 107 - 96509753 cagcgaggaaacagcaagtcctggaactcatatgaagcagtgtgactGTGGGGCTCTCACCCAGGCCTCCCCACTACACAGCTGTTGGGCAGAACGGCA------------AAAGCCAG---------------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7144583 107 - 13098629 cagcgaggaaacagcaagtcctggaactcatatgaagcagtgtgactGTGGGGCTCTCACCCAGGCCTCCCCACTACACAGCTGTTGGGCAGAACGGCA------------AAAGCCAG---------------------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4104416 107 - 4483953 cagcgaggaaacagcaagtcctggaACTCATATGAAGCAGCGTGACTGTGGGGCTCTCACCCAGGCCTCCCCACTACACAGCTGTTGAGCAGAACGGCA------------AAAGCCAG---------------------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24735129 105 + 33263144 cagcgaggaaacagcaagtcctggaactcatatgaagcagtgtgactGTGGGGCTCTCACCCAAG--CCCCCACTACACAGCTGTTGAGCAGAATGGCA------------AAAGCCAG---------------------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015738 107 - 14338769 cagtgaggaaacagcaagtcctggaactcatatgaagcagtgtgactGTGGGGCTCTCACCCAGGCCCCCCCACTACACAGCTGTTGAGCAGAATGGCA------------AAAGCCAG---------------------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 954009 107 + 1946073 cagcgaggaaacagcaagtcctggaactcatatgaagcagtgtgactGTGGGGCTCTCACCCAGGCCTCCCCATTACACAGCTGTTGAGCAGAACGGCA------------AAAGCCAG---------------------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980636 107 - 2117846 tggcaaataaacatcaagtccttgaattcatatgaagcagcgtgactccagggctcTCTCTCAGGCCTCCCTATTACACAGCTGTTGAGCAAAATAGCA------------AAAGCCAG---------------------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8891736 107 - 16357246 tggaaaataaacatcaagtccttgaattcatatgaagcagtgtgactctagggctcTCTCCCAGGCCTCCCTATTACACAACTGTTGAGCAAAATAGCA------------AAAGCCAG---------------------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1377176 107 - 1807191 cggcaaataaacatcaagtcctcgaattcatatgaagcagtgtgactctagggctcTCTCCCAGGCCTCCCTATTACACAGCTGTTGAGCAAAATAGCA------------AAAGCCAG---------------------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 55278 106 + 5963231 tggcaaataaacatcaagtccttgaattcatataaagcagcgtgactctagggctcTCTCCCAGGCCTCCCTATTACACAGCTGTTGAGC-AAATAGCA------------AAAGCCAG---------------------------- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5745282 107 + 108171978 cagctaggaaatggccagtgctggaattcatacaaagcagtgtcacgccagGCCTCCCACCCAGGCCTCCACACGGCATAGGTGTTGAGCAGAATGGCA------------AAAGCCAG---------------------------- i micMur3.chr7 C 0 I 390 s mm10.chr15 82842987 96 + 104043685 -------AAAGATGTAAGAGCTAGGATTCATAGCAAGCAGCCTGACTTCTGGTTGCTCATCCTAGACTCCCTG-TATACA---GTGGAGCAGAAGAGCA------------AAAGCCAG---------------------------- i mm10.chr15 C 0 I 46 s canFam3.chr10 46123690 104 - 69331447 -agctagggaatgccaagtgctggaattcatatgcagcaacatgactccagGACTCTCGCCTAA--CTCTCACCTCCCCAGCAGCTGAGCAGAATGGCC------------AGGGCAGA---------------------------- i canFam3.chr10 C 0 I 9 s dasNov3.JH570235 105546 147 + 1056298 tagctaggaagtggtaggtgctggaatccatctgaagcagtgtggatccagggctcTCACCCATGCCTCCCCACTACACAGCTGTACAGCAGATCAGCACAGCTGGAGAGGAAAGCCAGAGCAGGATTTCCACGCAAGAAGTAGGAG i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5108732 203 - 6317780 I a score=289836.000000 s hg38.chr22_GL383582v2_alt 112762 30 + 162811 GACC------TTCCGGGGCAAGTGTT-------------------------------TAGCTGCCTT s panTro5.chr22 28892686 30 + 37823149 GACC------TTCCGGGGCAAGTGTT-------------------------------TAGCTGCCTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41167257 30 + 50109623 GACC------TTCCGGGGCAAGTGTT-------------------------------TAGCTGCCTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3190098 30 + 4464012 GACC------TTCCAGGGCAAGTGTT-------------------------------TAGCTGACTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685859 30 - 115148730 GACC------TTCCGGGGCAAGTGTT-------------------------------TAGCTGACTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84301390 30 + 92844088 GACC------TTCTGGAACAAGTGTT-------------------------------TAGCTGACTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647752 30 - 96509753 GACC------TTCTGGAACAAGTGTT-------------------------------TAGCTGACTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7144690 30 - 13098629 GACC------TTCTGGAACAAGTGTT-------------------------------TAGCTGACTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4104523 30 - 4483953 GACC------TTCTGGAACAAGTGTT-------------------------------TACCTGACTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24735234 30 + 33263144 GACC------TTCTGGAACAAGTGTT-------------------------------TAGCTGACTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015845 30 - 14338769 GACC------TTCTGGAACAAGTGTT-------------------------------TAGCTGACTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 954116 30 + 1946073 GACC------TTCTGGAACAAGTGTT-------------------------------TAGCTGACTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980743 30 - 2117846 GACC------TTCTGGGGCAAGTGTT-------------------------------TACCTCACTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8891843 30 - 16357246 GACC------TTCTGGCGCAAGTGTT-------------------------------TACCTGACTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1377283 30 - 1807191 GATC------TTCTGGGGCAAGTGTT-------------------------------TACCTGACTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 55384 30 + 5963231 GACC------TTCTGGGGCAAGTGTT-------------------------------TACCTGACTT i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82843129 67 + 104043685 GACCTGGCtttttttatataagagttatttatttattttatctatatgaatagaccatagctgtctt i mm10.chr15 I 46 I 117 s canFam3.chr10 46123803 29 - 69331447 GATC------TCTGAGGACACA-ACT-------------------------------AAACTGAATG i canFam3.chr10 I 9 C 0 s dasNov3.JH570235 105693 30 + 1056298 GATC------TTCAAGGGCAACTATC-------------------------------AAAATGACTT i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5108732 203 - 6317780 I e micMur3.chr7 5745389 390 + 108171978 I a score=448634.000000 s hg38.chr22_GL383582v2_alt 112792 47 + 162811 GATTTTCTCTTC---------TCATA-CGTTTT-------------------------TCCAATAA--------ATTGG--------ACGAATCTGAT s panTro5.chr22 28892716 72 + 37823149 GATTTTCTCTTC---------TCATA-CGTTTCCACAAAGGACAACTTTCAAAGATTGTCCAATAA--------ATTGG--------ACGAATCTGAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41167287 72 + 50109623 GATTTTCTCTTC---------TCATA-CGTTTCCACAAAGGACAACTTTCAAAGATTGTCCAATAA--------ATTGG--------ACGAATCTGAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3190128 47 + 4464012 GATTTTCTCTTC---------TCATA-CGTTTT-------------------------TCCAATAA--------ATTGG--------ACGAAACTGAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685889 47 - 115148730 GATTTTCTCTTC---------TCATA-CGTTTT-------------------------TCCAATAA--------ATTGG--------ACGAAACTGAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84301420 47 + 92844088 GATTTTCTCTTC---------TCATA-CGTTTT-------------------------TCCAATAA--------ATTGG--------ACAAAACTGAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647782 47 - 96509753 GATTTTCTCTTC---------TCATA-CGTTTT-------------------------TCCAATAA--------ATTGG--------ACAAAACTGAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7144720 47 - 13098629 GATTTTCTCTTC---------TCATA-CGTTTT-------------------------TCCAATAA--------ATTGG--------ACAAAACTGAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4104553 47 - 4483953 GATTTTCTCTTC---------TCATA-CGTTTT-------------------------TCCAATAA--------ATTGG--------ACAAAACTGAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24735264 47 + 33263144 GATTTTCTCTTC---------TCATA-CGTTAT-------------------------TCCAATAA--------ATTGG--------ACAAAACTGAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015875 47 - 14338769 GATTTTCTCTTC---------TCATA-CGTTTT-------------------------TCCAATAA--------ATTGG--------ACAAAACTGAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 954146 47 + 1946073 GATTTTCTCTTC---------TCACA-CGTTTT-------------------------TCCAATAA--------ATTGG--------ACAAAACTGAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980773 47 - 2117846 GCTTTTTCCTTC---------TCATA-CGTTTT-------------------------TCCAATAA--------ATGGA--------ATGAAACTGAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8891873 47 - 16357246 GCTTTTCCCTTC---------TCATA-CGTTTT-------------------------TCCAATAA--------ATGGA--------ATGAAACTGAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1377313 47 - 1807191 GCTTTTTCCTTC---------TCATA-CGCTTT-------------------------TCCAATAA--------ATGGA--------ATGAAACTGAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 55414 47 + 5963231 GCTTTTTCCTTC---------TCATA-CGTTTT-------------------------TCCAACCA--------ATGGA--------ATGAAATGGAT i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82843313 61 + 104043685 catcatctctctaggccTTGATCTTA-CTTTTT-------------------------TCCAACAA--------ATAGGCAAAGAGAAAGAAGTT--- i mm10.chr15 I 117 C 0 s canFam3.chr10 46123832 55 - 69331447 -TATTTTCCTTC---------ACAGAGCTTCTT-------------------------TTCAATAAATGAGAAGATGGG--------AAGAAATTGGC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 105723 55 + 1056298 GATATTTCCTTG---------CCATA-CTCCTT-------------------------TCTAGTAATTTGGAAGATGGG--------AAGAAACTGGT i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5108732 203 - 6317780 I e micMur3.chr7 5745389 390 + 108171978 I a score=2641814.000000 s hg38.chr22_GL383582v2_alt 112839 236 + 162811 CTGCAGTAGCAAGCCTTGAGGGTCCCGCGAAATTGGCCTTGGCTTGGGGTGCGGAGGAGGAACCTCCATTTTCCTGAAACAGTATTGGATGAAGCAAGCCG-TATCTTTTGGAAAAATCGAAGCCCTA-GTGCAGGACCTGTGTGCGGCAAGGCATTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTA s panTro5.chr22 28892788 233 + 37823149 CTGCAGTAGCAAGCCTTGAGGGTCCCGCGAAATTGGCCTTGGCTTGGGGTGCGGAGGAGGAACCTCCATTTTCCTGAAACAGTATTGGA---AGAAAGCCG-TATCTTTTGGAAAAATCGAAGCCCTA-GTGCAGGACCTGTGTGCGGCAAGGCGTTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41167359 233 + 50109623 CTGCAGTAGCAAGCCTTGAGGGTCCCGCGAAATTGGCCTTGGCTTGGGGTGCGGAGGAGGAACCTCCATTTTCCTGAAACAGTATTGGA---AGAAAGCCG-TATCTTTTGGAAAAATCGAAGCCCTA-GTGCAGGACCTGTGTGCGGCAAGGCGTTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3190175 236 + 4464012 CTGCAGTAGCAAGCCTTGAGGGTCCCGCGAAATTGGCCTTGGCTTGGGGTGCGGAGGAGGAACCTCCATTTTCCTGAAACAGTATTGGATGAAGAAAGCCG-TATCTTTTGGAAAAATCGAAGCCCTA-GTGCAGGACCTGTGTGCGGCAAGGCGTTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106685936 231 - 115148730 CTGCAGTAGCAAGCCTTGAGGGTCCCGCAAAATTGGCCTCGGCTTGGGATGCAGAGGAGGAATCTCCATTTTCCTGA------ATTGGATGAAGGAAGCCGTTATCTTTTGGAAAAATCGAAGCCCTA-GTGCAGGACCTGCGTGCGGCAAGGCATTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84301467 236 + 92844088 CTGCAGTAGCAAGCCTTGAGGGTCTCACAAAATTGGCCTTGGCTTGGGGTGCAGAGGAGGAACCTCCATTTTTCTGAAACAGTATTGGATGAAGGAAGCCG-TATCTTTTGGAAAAATCAAAGCCCCA-GTGCAGGATCTGCGTGTGGCAAGGAGTTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87647829 236 - 96509753 CTGCAGTAGCAAGCCTTGAGGGTCTCACAAAATTGGCCTTGGCTTGGGGTGCGGAGGAGGAACCTCCATTTTTCTGAAACAGTATTGGATGAAGGAAGCCG-TATCTTTTGGAAAAATCAAAGCCCCA-GTGCAGGATCTGCGTGTGGCAAGGAGTTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7144767 236 - 13098629 CTGCAGTAGCAAGCCTTGAGGGTCTCACAAAATTGGCCTTGGCTTGGGGTGCGGAGGAGGAATCTCCATTTTTCTGAAACAGTATTGGATGAAGGAAGCCG-TATCTTTTGGAAAAATCAAAGCCCCA-GTGCAGGATCTGCGTGTGGCAAGGAGTTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4104600 236 - 4483953 CTGCAGTAGCAAGCCTTGAGGGTCTCACAAAATTGGCCTTGGCTTGGGGTGCGGAGGAGGAACCTCCATTTTTCTGAAACAGTATTGGATGAAGCAAGCCG-TATCTTTTGGAAAAATCAAAGCCCCA-GTGCAGGATCTGCGTGTGGCAAGGAGTTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24735311 196 + 33263144 CTACAGTAGCAAGCCTTGAGGGTCTCACAAAATTGGCCTTGGCTTGGGGTACGGAGGAGGAACCTCCATTTTTCTGAAACAGTATTGGATGAAGGAAGCCG-TATCTTTTGGAAAAATCAAAGCCCC------------------------------------------AATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACACAGAGCTTCTCTAACCACACACCAGCTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14015922 236 - 14338769 CTGCAGTAGCAAGCCTTGAGGGTCTCACAAAATTGGCCTTGGCTTGGGGTGCGGAGGAGGAACCTCCATTTTTCTGAAACAGTATTGGATGAAGGAAGCCG-TATCTTTTGGAAAAATCAAAGCCCCA-GTGCAGGATCTGCGTGTGGCAAGGAGTTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 954193 236 + 1946073 CTGCAGTAGCAAGCCTTGAGGGTCTCACAAAATTGGCCTTGGCTTGGGGTGCGGAGGAGGAACCTCCATTTTTCTGAAACAGTATTGGATGAAGGAAGCCG-TATCTTTTGGAAAAATCAAAGCCCCA-GTGCAGGATCTGCGTGTGGCAAGGAGTTGCTTTCTGCA-GAATCACACAAACTCCCTTGAATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1980820 231 - 2117846 CTGCAGTTGCAGGCCCTAAGGGTCCCACAAAATTGGCCTGGGGTTGGGGT---GAAGAGGAAACTCCATTTTTCTGA--GAGTATTGGATGAAGGAAGCCC-TATCTTTTGGAAAAATCAAAGTCCTA-ATGCAGGACCTTGGTGCGGCAACGCATTGCTTTCTGCA-GAACCACAGAAACCTTCCTGCATGAAATTCAGAAAGTTTGACATAGAGCTTCTTTAACCACACACCAGCTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8891920 231 - 16357246 CTGCAATTGCAGGCCCTGAGGGTCCCCCAAAACTGGCCTGGGGTTGGGGT---GAGGAGGAACCTCCATTTTTCTGA--CAGTACTGGATGAAGGAAGCCC-TATCTTTTGTAATAATCAAACTCCTA-GTGCAGGACCTTGGTGCGGCAATGCGTTGCTTTTTGCA-GAATCACAGAAACCTTCCTGCATGAAGTTCAGAAGGCTTGACATAGAGCTTCTCTAACTACACACCAGCTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1377360 231 - 1807191 CTGCAGCTGCAGACCCTGAGGGTCCCACAAAATTGGCCTGGGGTTGGGGT---GAGGAGGAACCTCCATTTTTTTGA--GATTCCTGGATGAAGGAAGCCC-TATCTTTTGGAAAAATCAAAGTCCTA-GTGCAGGACCTTGGTGCGGCAATGCGTTGCTTTCTGTA-GAATCACAGAAACCTTCCTGCATGAAGTTCAGAAGGTTTGACATAGAGCTTCTCTAACCACACACCAGCTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 55461 231 + 5963231 CTGCAGCTGCAGGCCCTAAGGGTCCCACAAAATTGGCCTGGGGTTGGGGT---GAGGAGGAACCTCCATTTTTCTGA--GAGTATTAGATGAAGGAAGCCC-TATCTTTTGGAAAAATCAAAGTCCTA-GTGCAGGACCTTGGTGCGGCAATGCGTTGCTTTCTGCA-GAATCACAGAAACCTTCCTGCATGAAATTCAGAAGGTTTGACATAGAGCTTCTCTAACCACACACCAGCTA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5108935 233 - 6317780 CTGCAGTTGCAGGCCTTCAAAGTCCCACGATATTGGCCTTGGGTTGGGGTGAGGAAGAGGAATTTCCATTTTCT---AACAATATTAGATAAAGGAAGCTA-CATATCCTGGAAAAGTCAAAGCCCTT-GCACAGGACTCGCGTGGGGCAAGGTGTTGCCTTCTACACGAATCACGCAAACTTTCCCACACAGAGTCCAGGAGCCTTGACATAT-GCTTCTCTAGCTACGCACCAGCTA i proCoq1.NW_012136747v1 I 203 I 71 s mm10.chr15 82843374 189 + 104043685 ----AGTAGTAGACAT--AGGTCCTCACA------GTCTTAGATTAGAATGAGAAAAAGAAACCTCCATTTTC---------TGTTAATAGAAGATAA----TGTCACCCAGAAAATGTAAAGTTCTC-ACACAGGACTCCAG---GACAAGATAATACTTCCTCAATGAATCCTATAGACCTTCGTG--TGAAGT-------------------GCTTTTCTAGACACAAGCTAGTTC i mm10.chr15 C 0 I 2 s canFam3.chr10 46123887 185 - 69331447 CTGTAGTTGGCAGTCTTCCGGGTCCTACAAAATTGGCCTTGGCAAGCGGT---AGAGGAGAAGTTCCATTTTCCTAA--CAATATGGAATAAAGGAAGCTG-TACGTCCTGGAAAATTCAAGCTCTCGCGTGCACGA-CTGTGTGGCCCAAGGTGTCACTTTCTGCT--------------------------------------CTGACGAAG-GCTCCCCAACCTGTGA-------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 105778 226 + 1056298 CTGAAATTGC--------AGGGTCTCGCAAAATTGGCCTTGGATTTGGGCAAGGGGGAGGAACCTGCATTTTCCTAA--CTGCAATGGATAAAGGAAGCTA-TATATCCTGGGAAACTCAAAGCCCTA-GTGCAAGAACTGTGTAGGGCAAGGAGAAGCTCAGTGCATGAATCACAAAAACCCACCTGCACAAAGTTCAGGAAGCTTGACAAGGTGCCCCTGGCACCACA-AGCAGCTA i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36317341 0 - 42659167 C e micMur3.chr7 5745389 390 + 108171978 I a score=260462.000000 s hg38.chr22_GL383582v2_alt 113075 25 + 162811 -AGGGG------CCGAGGCTGAGGCTGAGTCA s panTro5.chr22 28893021 25 + 37823149 -AGGGG------CCGAGGCTGAGGCTGAGTCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41167592 25 + 50109623 -AGGGG------CCGAGGCTGAGGCTGAGTCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3190411 25 + 4464012 -AGGGG------CCGAAGCTGAGGCTGAGTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686167 25 - 115148730 -AGGGG------CCGGGGCTGAGGCTGAGTCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84301703 25 + 92844088 -AGGGG------CCAAGGCTGAAGCTGAGTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87648065 25 - 96509753 -AGGGG------CCAAGGCTGAAGCTGAGTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7145003 25 - 13098629 -AGGGG------CCAAGGCTGAAGCTGAGTCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4104836 25 - 4483953 -AGGGG------CCAAGGCTGAAGCTGAGTCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24735507 25 + 33263144 -AGGGG------CCAAGGCTGAAGCTGAGTCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14016158 25 - 14338769 -AGGGG------CCAAGGCTGAAGCTGAGTCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 954429 25 + 1946073 -AGGGG------CCAAGGCTGAAGCTGAGTCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1981051 31 - 2117846 -AGGGGCTGAGACTGAGGCTGAGGCTGAGTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8892151 25 - 16357246 -AGGGG------CCGAGGCTGAGGCTGAGTCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1377591 25 - 1807191 -AGGGG------CCGAGGCTGAGGGTGAGTCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 55692 25 + 5963231 -AGGGG------CCGAGGCTGAGGCTGAGTCA i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82843565 25 + 104043685 -GGGAC------CCAGGGTTTAGGATGAtgta i mm10.chr15 I 2 I 524 s canFam3.chr10 46124072 12 - 69331447 -AGGGA------GCAGGGC------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 106004 25 + 1056298 TGGAGA------CTTAGGCTTCA-CTTACTTA i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5109168 71 - 6317780 I e micMur3.chr7 5745389 390 + 108171978 I a score=826874.000000 s hg38.chr22_GL383582v2_alt 113100 79 + 162811 --------CCCTGCAAGTTCCCTGACAGGAGT-TTAACTTCACATTTCAACGGGTTTTCCAGTAGAGACTCAAGATATTTGTTGAATT s panTro5.chr22 28893046 79 + 37823149 --------CCCTGCAAGTTCCCTGACAGCAGT-TTAACTTCAGATTTCAACTGGTTTTCCAGTAGAGACTCAAGATATTTGTTGAATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41167617 79 + 50109623 --------CCCTGCAAGTTCCCTGACAGCAGT-TTAACTTCAGATTTCAACTGGTTTTCCAGTAGAGACTCAAGATATTTGTTGAATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3190436 79 + 4464012 --------CCCTGCAAGTTCCCTGACAGCAGT-TTAACTTCAGATTTCAACTGGTTTTCCAGTAGAGACTCAAGATATTTGCTGAATT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686192 77 - 115148730 --------CCCTGCAAGTTCCCTGACAGCAGT-TTAACTTCAGATTTCAACTGCTTTTCCAGT--AGACTCAAGATATTTGTTGAATT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84301728 78 + 92844088 --------CCCTGCAAGTTCCCTGACAGCAGC-TTAACTTCAGATTTCAACTGGTTTTCCAGCAGAGACTC-AGAAAGTTGTTGAATT i rheMac8.chr10 C 0 I 334 s macFas5.chr10 87648090 78 - 96509753 --------CCCTGCAAGTTCCCTGACAGCAGC-TTAACTTCAGATTTCAACTGGTTTTCCAGCAGAGACTC-AGAAAGTTGTTGAATT i macFas5.chr10 C 0 I 334 s macNem1.NW_012012688v1 7145028 78 - 13098629 --------CCCTGCAAGTTCCCTGACAGCAGC-TAAACTTCAGATTTCAACTGGTTTTCCAGCAGAGACTC-AGAAAGTTGTTGAATT i macNem1.NW_012012688v1 C 0 I 311 s cerAty1.NW_011999588v1 4104861 78 - 4483953 --------CCCTGCAAGTTCCCTGACAGCAGC-TTAACTTCAGATTTCAACTGGTTTTCCAGCAGAGACTC-AGAAAGTTGTTGAATT i cerAty1.NW_011999588v1 C 0 I 319 s chlSab2.chr19 24735532 78 + 33263144 --------CCCTGCAAGTTCCCTGACAGCAGT-TTAACTTCAGATTTCAACTGGTTTTCCAGCAGAGACTC-AGAAAGTTGTTGAATT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14016183 78 - 14338769 --------CCCTGCAAGTTCCCTGACAGCAGC-TTAACTTCAGATTTCAACTGGTTTTCCAGCAGAGACTC-AGAAAGTTGTTGAATT i manLeu1.NW_012102031v1 C 0 I 318 s colAng1.NW_012115588v1 954454 78 + 1946073 --------CCCTGCAAGTTCCCTGACAGCAGT-TTAACTTCAGATTTCAACTGGTTTTCCAGCAGAGACTC-AGAAAGTTGTTGAATT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1981082 78 - 2117846 --------CCCTCAAAGTTCCCTGATAGCAGT-TTAACTTCACATTTCAACTGGTTTTCCATTAGAGACTC-AGGTATTTGTTGAATT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8892176 78 - 16357246 --------CCCTCAAAGTTCCCTGACAGCAGT-TTAACTTCACATTTCAACTGGCTTTCCAGTAGAGACTC-AGATATTTGTTGAATT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1377616 78 - 1807191 --------CCCTCAAAGTTCCCTGACAGCAGT-TTAACTTCACATTTCAACTGGCTTTCTAGTAGACACTC-AGGTATTTGTTGAATT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 55717 78 + 5963231 --------CCCTCAAAGTTCCCTGACAGCAGT-TTAACTTCACATTTCAACTGGTTTTCCAGTAGAGACTC-AGGTATTTGTTGAATT i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46124084 64 - 69331447 --------------------CCTCACAGCATT-CTAACTTCAGATTTGTATCAGGTTTCTAGCAAGAACTC---ATATTTGTTGAATC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 106029 87 + 1056298 TCCATCAACGATCCAAGTTCTCTTAAAACATTGTTAACTTCAGATTTTTACTGGTTTTCTAGCAGCGAATG-AAATGTTTGTTGAAAT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82843590 524 + 104043685 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5109168 71 - 6317780 I e micMur3.chr7 5745389 390 + 108171978 I a score=1082659.000000 s hg38.chr22_GL383582v2_alt 113179 90 + 162811 GAAAGGGATGCCTGCTTTTACATACTATTTGCT---GTTAGCTCTTTTAACAGATTAGCAATAACTAGTTTAACATCCCAGGGATGAGTAAT--------T s panTro5.chr22 28893125 90 + 37823149 GAAAGGGATGCCTGCTTTTACATACTATTTGCT---GTTAGCTCTTTTAACAGATTAGCAATAACTAGTTTAACATCCCAGGGATGAGTAAT--------T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41167696 90 + 50109623 GAAAGGGATGCCTGCTTTTACATACTATTTGCT---GTTAGCTCTTTTAACAGATTAGCAATAACTAGTTTAACATCCCAGGGATGAGTAAT--------T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3190515 90 + 4464012 GAAAGGGATGCCTGCTTTTACATACTATTTGCT---GTTAGCTCTTTTAACAGATTAGCAATAACTAGTTTAACATCCCAGGGATGAGTAAT--------T i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686269 90 - 115148730 GAAAGGGATGCCTGCTTTTATATACTATTTGCT---GTTAGCTCTTTTAACAGATTAGCAATAACTAGTTTAACATCCCAGGGATGAGTAAT--------T i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84302140 90 + 92844088 GAAAGGGATGCCTGCTTTTACATGCTATTTACT---GTTTGCTCTTTTAACAGATTAGCAATAACTAGTTTAACATCCCAGGGATGAGTAAT--------T i rheMac8.chr10 I 334 C 0 s macFas5.chr10 87648502 90 - 96509753 GAAAGGGATGCCTGCTTTTACATGCTATTTACT---GTTTGCTCTTTTAACAGATTAGCAATAACTAGTTTAACATCCCAGGGATGAGTAAT--------T i macFas5.chr10 I 334 C 0 s macNem1.NW_012012688v1 7145417 90 - 13098629 gaaaGGGATGCCTGCTTTTACATGCTATTTACT---GTTTGCTCTTTTAACAGATTAGCAATAACTAGTTTAACATCCCAGGGTTGAGTAAT--------T i macNem1.NW_012012688v1 I 311 C 0 s cerAty1.NW_011999588v1 4105258 90 - 4483953 gaaaGGGATGCCTGCTTTTACATGCTATTTACT---GTTTGCTCTTTTAACAGATTAGCAATAACTAGTTTAATATCCCAGGGATGAGTAAT--------T i cerAty1.NW_011999588v1 I 319 C 0 s chlSab2.chr19 24735610 90 + 33263144 GAAAGGGATGCCTGCTTTTACATGCTATTTACT---GTTTGCTCGTTTAACAGATTAGCAATAACTAGTTTAACATCCCAGGGATGAGTAAT--------T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14016579 90 - 14338769 gaaaGGGATGCCTGCTTTTACATGCTATTTACT---GTTTGCTCTTTTAACAGATTAGCAATAACTAGTTTAACATCCCAGGGATGAGTAAT--------T i manLeu1.NW_012102031v1 I 318 C 0 s colAng1.NW_012115588v1 954532 90 + 1946073 GAAAGGGATGCCTGCTTTTACATGCTATTTACT---GTTAGCTCTTTTAACAGATTAGCAATAACTAGTTTAACATCCCAGGGATGAGTAAT--------T i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1981160 90 - 2117846 GAAAAGGATGCCTGCTTTTACATGCTATTTGCT---GTTAGCTCTTTTAACAGATTAGTAATAATTACCTTAACATCCCAGGGATGAGTAAT--------T i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8892254 89 - 16357246 G-AAAGGATGCCTGCTTTTACATGGTATTTGCT---GTTAGCTCTTTTAACAGATTAGCAATAACTACCCTAACATCCCAGGGATAAGTAAT--------T i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1377694 90 - 1807191 GAAAGGGATGCCTGCTTTTACACGCTATTTGCT---GTTAGCTCTTTTAACAGATTAGCAATAACTATCTTACCATCCCAGGGATGAGTAAT--------T i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 55795 90 + 5963231 GAAAGGGATGCCTGCTTTTACATGCTATTTGCT---GTTAGCTCTTTTAACAGATGAGCAATAACTACCTTAACATCCCAGGGATGAGTAAT--------T i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46124148 101 - 69331447 GAAAGGAGTACCTACTTTCACATTCTATTTGATCACGTTTGCTCTTTCAACACATTACCAGTAACTAGTTTAATATCTCAGGGATGAATTATGTGGCCTAC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 106116 93 + 1056298 GAAATGTATACCTACTTTTACACAGTATTCAATCATGCTAGCCCTTATAACAGATTAGCAACAACTAGTTGAACTTCTCAGGGATGAATTAT--------T i dasNov3.JH570235 C 0 I 883 e mm10.chr15 82843590 524 + 104043685 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5109168 71 - 6317780 I e micMur3.chr7 5745389 390 + 108171978 I a score=2079003.000000 s hg38.chr22_GL383582v2_alt 113269 234 + 162811 AACATATAATAACTTGTGTGTTGTGGCTTGTTTATCAATATTTTTG------TTTATGGT------CCTTTGGGATTTTTTTGAATATTTTTC---------TCTA-----CTTATTTATTTTGAGA----------------------------------------------CTAGGTCATTAAGActggctaattttcgtattttt------------------------------------------ggtagagacaggg-----------------------------tttctc-------------catgttgcccaggctgg-------tctcaaactcctggg-------------------------------------------ctcaggtaatccaaagtgctaggattacaagcataagccaccttgcc s panTro5.chr22 28893215 229 + 37823149 AACATATAATAACTTGTGTGTTGTGGCTTGTTTATCAATATTTTTG------TTTATGGT------CCTTTGGGATTTTTTTGAATATTTTTC---------TCTA-----TTTATTT-----GAGA----------------------------------------------CTAGGTCATTAAGActggctaattttcgtattttt------------------------------------------ggtagagacaggg-----------------------------tttctc-------------catgttgcccaggctgg-------tctcaaactcctggg-------------------------------------------ctcaggtaatccaaagtgctaggattacaagcataagccaccttgcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41167786 229 + 50109623 AACATATAATAACTTGTGTGTTGTGGCTTGTTTATCAATATTTTTG------TTTATGGT------CCTTTGGGATTTTTTTGAATATTTTTC---------TCTA-----TTTATTT-----GAGA----------------------------------------------CTAGGTCATTAAGActggctaattttcgtattttt------------------------------------------ggtagagacaggg-----------------------------tttctc-------------catgttgcccaggctgg-------tctcaaactcctggg-------------------------------------------ctcaggtaatccaaagtgctaggattacaagcataagccaccttgcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3190605 233 + 4464012 AACATATAATAACTTGTGTGTTGTGGCTTGTTTATCAATATTTTTG------TTTATGGT------CCTTTAGGATTTTTTTGAATATTTTTC---------TCTA-----TTTATTTATTTTGAGA----------------------------------------------CTAGGTCA-TAAGActggctaattttcgtattttt------------------------------------------ggtagagacaggg-----------------------------tttctc-------------catgttgcccaggctgg-------tctcaaactcctggg-------------------------------------------ctcaggtaatccaaagtgctaggattacaagcataagccaccttgcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686359 229 - 115148730 AACATATAATAACTTGTGTGTTGTGGCTTGTTTATCAATATTCTTG------TTTATGGT------CCTTTGGGATTTTTTAAAATATTTTTC---------TCTA-----TTTATTT----TGAGA----------------------------------------------CTAGGTTA-TAAGActggctaattttcgtattttt------------------------------------------ggtagagacaggg-----------------------------tttctc-------------catgttgcccaggctgg-------tctcaaactcctggg-------------------------------------------ctcaggtaatccaaagtgccaggattacaagcataagccaccttgcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84302230 229 + 92844088 AATATATAACAACTTGTGTGTTGTGGCTTGTTTATCAATATTCTTG------TTTATGGT------CCTTTGGGATTTTTTTGAATATTTTTC---------TCTA-----TTTATTT----TGAGA----------------------------------------------CTGGGTTA-AAAGActggctgattttcgtattttt------------------------------------------ggtagaaacaagg-----------------------------tttctc-------------catgttgcccaggctgg-------tctcaaactcctggg-------------------------------------------ctcaagtaatccaaagtgctaggattacaagcataagccaccttgcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87648592 229 - 96509753 AATATATAACAACTTGTGTGTTGTGGCTTGTTTATCAATATTCTTG------TTTATGGT------CCTTTGGGATTTTTTTGAATATTTTTC---------TCTA-----TTTATTT----TGAGA----------------------------------------------CTGGGTTA-AAAGActggctaattttcgtattttt------------------------------------------ggtagaaacaagg-----------------------------tttctc-------------catgttgcccaggctgg-------tctcaaactcctggg-------------------------------------------ctcaagtaatccaaagtgctaggattacaagcataagccaccttgcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7145507 229 - 13098629 AATATATAACAACTTGTGTGTTGTGGCTTTTTTATCAATATTCTTG------TTTATGGT------CCTTTGGGATTTTTTTGAATATTTTTC---------TCTA-----TTTATTT----TGAGA----------------------------------------------CTGGGTTA-AAAGActggctaattttcgtattttt------------------------------------------ggtagaaacaagg-----------------------------tttctc-------------catgttgcccaggctgg-------tctcaaactcctggg-------------------------------------------ctcaagtaatccaaagtgctaggattacaagcataagccaccttgcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4105348 229 - 4483953 AATATATAACAACTTGTGTGTTGTGGCTTGTTTATCAATATTCTTG------TTTATGGT------CCTTTGGGATTTTTTTGAATATTTTTC---------TCTA-----TTTATTT----TGAGA----------------------------------------------CTGGGTTA-AAAGATTggctaattttcgtattttt------------------------------------------ggtagaaacaagg-----------------------------tttctc-------------catgttgcccaggctgg-------tctcaaactcctggg-------------------------------------------ctcaaataatccaaagtcctaggattacaagcataagccaccttgcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24735700 229 + 33263144 AATATATAACAACTTGAGTGTTGTGGCTTGTTTATCAATATTCTTG------TTTATGGT------CCTTTGGGATTTTTTTGAATATTTTTC---------TCTA-----TTTATTT----TGAGA----------------------------------------------CTGGGCTA-AAAGATTggctaattttcgtattttt------------------------------------------ggtagaaacaagg-----------------------------tttctc-------------catgttgcccaggctgg-------tctcaacctcctggg-------------------------------------------ctcaagtaatccaaagtgctaggattacaagcataagccaccttgcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14016669 229 - 14338769 AATATATAACAACTTGTGTGTTGTGGCTTGTTTATCAATATTCTTG------TTTATGGT------CCTTTGGGATTTTTTTGAATATTTTTC---------TCTA-----TTTATTT----TGAGA----------------------------------------------CTGGGTTA-AAAGATTggctaattttcgtattttt------------------------------------------ggtagaaacaagg-----------------------------tttctc-------------catgttgcccaggctgg-------tctcaaactcctggg-------------------------------------------ctcaagtaatccaaagtgcttggattacaagcataagccaccttgcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 954622 228 + 1946073 AATATATAACAACTTGTGTGTTGTGGCTTGTTTA-CAATATTCTTG------TTTATGGT------CCTTTGGGATTTTTTTGAATATTTTCC---------TCTA-----TTTATTT----TGAGA----------------------------------------------CTGGGTTA-TAAGActggctaattttcgtattttt------------------------------------------ggtagaaacaggg-----------------------------tttctc-------------catgttgcccaggctgg-------tctcaaactcctggg-------------------------------------------ctcaagtaatccaaagtgctaggattacaagcataagccaccttgcc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1981250 238 - 2117846 AATATATAACGGCTTATGTTTTGGGGCTTGTTTATCAATATTCTTG------TTTATGGT------CCTTTGACattttttttattatttttatctattatttttg-----attattt----aGAGA----------------------------------------------CTGGGTTA-TGAAActggctaatttttgtattttt------------------------------------------ggtggagatagag-----------------------------tttcgc-------------catgttgccgaggctgg-------ttgcaaactcctgga-------------------------------------------ctcaggtgatctgaaatactaggatttcaggcatgagccaccttgcc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8892343 240 - 16357246 AATAGATAACAACTTGTGTTTTGGGGCTTGTTTATCAATATTCTTG------TTTATGGT------CCTTTGGCATTTTTTGATTATTTTTTATCTG-----TTTA-----TTTATTT----AGAGA----------------------------------------------CTGGGTTA-TGAAActggctaatttttgtattttt------------------------------------------ggtagagacagag-----------------------------tttcgc-------------catgttgccgaggctggaggctgatcgcaaactcctggg-------------------------------------------ctcaggtgatccaaaatactagcatttcaagcatcagctaccttgct i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1377784 225 - 1807191 AATAGATAACGACTTGTGTTTTGGGGC----TTATCAATATTCTTG------TTTATGGT------CCTTTGGCattttttg----atttttatcta-----ttta-----tttattt----aGAGA----------------------------------------------CTGGGTTA-TGAAActggctaatttttgtattttt------------------------------------------ggtagagacagag-----------------------------tttcgc-------------catgttgccgagactgg-------tcgcaaactcctggg-------------------------------------------ctcaggtgatccGAAATACTAGGATTTCAGGCATCAGCCACCTTGCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 55885 228 + 5963231 AATATATAACGACTTGTGTTTTGGGGCTTGTTTATCAATATTCTTG------TTTATGGT------CCTTTGGCattttttg-attatcttta---------ttta-----tttattt----aGAGA----------------------------------------------CTGGATTG-TGAAActggctaatttttgtattttt------------------------------------------gaaagagacagag-----------------------------tttcgc-------------catgttgccgaggctgg-------tcgcaaactcctggg-------------------------------------------ctcaggtgatccgaaatactacgatttcaggcatgagccaccttgcc i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46124249 395 - 69331447 TATATATAGTAACCTGT------------------CAATATTCTTGTTGGTATTTATGGTCTTTTACCTTTAGCATTTTCAAATAGTCTATCC---------TTTATAATTTTTTTTT----TGAGAGGGCAAATGGGGTGACAGGGGAGATGCAGAGGGAGGGGGTCTTTTTTTTGTTTT-TAAGACAG---AATTTTtttttttttaagattttatttatttgagaagagagaatgagcaagagagagagtacaaacagggggagggtcagagggagagggagaagcagacttctcactgagcagggagcctgacgtggggctcga-------tctcatgattctgagatcatgacctgagccaaaggcggacgcttaactgattgagccacccaggtgccccAgaaagagagaatcttaagc---aggctccatgcc i canFam3.chr10 C 0 C 0 e mm10.chr15 82843590 524 + 104043685 I e dasNov3.JH570235 106209 883 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5109168 71 - 6317780 I e micMur3.chr7 5745389 390 + 108171978 I a score=42296.000000 s hg38.chr22_GL383582v2_alt 113503 3 + 162811 cag s panTro5.chr22 28893444 3 + 37823149 cag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168015 3 + 50109623 cag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3190838 3 + 4464012 cag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686588 3 - 115148730 cag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84302459 3 + 92844088 cag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87648821 3 - 96509753 cag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7145736 3 - 13098629 cag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4105577 3 - 4483953 cag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24735929 3 + 33263144 cag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14016898 3 - 14338769 cag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 954850 3 + 1946073 cag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1981488 3 - 2117846 cag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8892583 3 - 16357246 cag i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1378009 3 - 1807191 CAG i cebCap1.NW_016107750v1 C 0 I 321 s aotNan1.NW_018512383v1 56113 3 + 5963231 cag i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82844114 3 + 104043685 TAG i mm10.chr15 I 524 C 0 s canFam3.chr10 46124644 3 - 69331447 cag i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 106209 883 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5109168 71 - 6317780 I e micMur3.chr7 5745389 390 + 108171978 I a score=5153.000000 s hg38.chr22_GL383582v2_alt 113506 7 + 162811 ------------ccTTGG-----C---- s panTro5.chr22 28893447 7 + 37823149 ------------ccTTGG-----C---- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168018 7 + 50109623 ------------ccTTGG-----C---- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3190841 7 + 4464012 ------------ccTTGG-----C---- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686591 7 - 115148730 ------------ccTTGG-----C---- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84302462 12 + 92844088 ------------GCTTGGCATTTC---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87648824 12 - 96509753 ------------GCTTGGCATTTC---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7145739 12 - 13098629 ------------GCTTGGCATTTC---- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4105580 12 - 4483953 ------------ccTTGGCATTTC---- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24735932 12 + 33263144 ------------ccTTGGCATTTC---- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14016901 12 - 14338769 ------------ccTTGGCATTTC---- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 954853 12 + 1946073 ------------ccTTGGCACTTC---- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1981491 7 - 2117846 ------------ATTTGG-----C---- i calJac3.chrUn_GL286373 C 0 I 5 s saiBol1.JH378157 8892586 7 - 16357246 ------------ATTTGG-----C---- i saiBol1.JH378157 C 0 I 5 s aotNan1.NW_018512383v1 56116 7 + 5963231 ------------ATTTGG-----C---- i aotNan1.NW_018512383v1 C 0 I 5 s mm10.chr15 82844117 6 + 104043685 ------------------CATTTT---- i mm10.chr15 C 0 I 1 s canFam3.chr10 46124647 28 - 69331447 cccagcatgaactcatgagacctcagac i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 106209 883 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5109168 71 - 6317780 I e micMur3.chr7 5745389 390 + 108171978 I e cebCap1.NW_016107750v1 1378012 321 - 1807191 I a score=903453.000000 s hg38.chr22_GL383582v2_alt 113513 107 + 162811 CAAAGAATCGTG------TACT-------------------------------------------CCTTAT--AAATTTTACTTTAAAATCAAGTGTAATGCTCCCCA-CATCATCC-CCCTA--CCTCTAGAGAG----------------AAAA-AAAAAGTCAAGAAATAAATCGT s panTro5.chr22 28893454 105 + 37823149 CAAAGAATCGTG------TACT-------------------------------------------CCTTAT--AAATTTTACTTTAAAATCAAGTGTAATGCTCCCCA-CATCATCC-CCCTA--CCTCTAGAGA------------------AAA-AAAAAGTCAAGAAATAAATCAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168025 105 + 50109623 CAAAGAATCGTG------TACT-------------------------------------------CCTTAT--AAATTTTACTTTAAAATCAAGTGTAATGCTCCCCA-CATCATCC-CCCTA--CCTCTAGAGA------------------AAA-AAAAAGTCAAGAAATAAATCAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3190848 107 + 4464012 CAAAGAATCGTG------TACT-------------------------------------------CCTTAT--AAATTTTACTTTAAAATCAAGTGTAATGCTCCCCA-CATCATCC-CCCCA--CCTCTAGAGAG----------------AAAA-AAAAAGTCAAGAAATAAATCAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686598 109 - 115148730 CAAAGAATCGTG------TACT-------------------------------------------CCTTAT--AAATTTTACTTTAAAATCAAGTGTAATGCTCCCCACCATCATCCTCCCCA--CCTCTAAAGAG----------------AAAA-AAAAAGTCAAGAAATAAATCAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84302474 102 + 92844088 CAAAGAATCGTG------CACT-------------------------------------------CCTTAT--AAATTTTACTTTAAAATCATGTGTAATGCTCCCCA-CATCATC--CCCCA--CCTCTAAA--------------------AAG-AAAAAATCAATAAATAAATCAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87648836 102 - 96509753 CAAAGAATCGTG------CACT-------------------------------------------CCTTAT--AAATTTTACTTTAAAATCATGTGTAATGCTCCCCA-CATCATC--CCCCA--CCTCTAAA--------------------AAG-AAAAAATCAATAAATAAATCAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7145751 102 - 13098629 CAAAGAATCGTG------CACT-------------------------------------------CCTTAT--AAATTTTACTTTAAAATCATGTGTAATGCTCCCCA-CATCATC--CCCCA--CCTCTAAA--------------------AAG-AAAAAATCAATAAATAAATCAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4105592 102 - 4483953 CAAAGAATCGTG------CACT-------------------------------------------CCTTAT--AAATTTTACTTTAAAATCATGTGTAATGCTCCCCA-CATCATC--CCCCA--CCTCTAAA--------------------AAG-AAAAAATCAATAAATAAATCAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24735944 104 + 33263144 CAAAGAATCGTG------CACT-------------------------------------------CCTTAT--AAATTTTACTTTAAAATCATGTGTAATGCTCCCCA-CATCATC--CCCCAC-CCTCTAAa--------------------aagaaaaaaatcaataaataaatCAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14016913 104 - 14338769 CAAAGAATCGTG------CACT-------------------------------------------CCTTAT--AAATTTTACTTTAAAATCATGTGTAATGCTCCCCA-CATCATC--CCCCACACCTCTAAA--------------------AAG-AAAAACTCAATAAATAAATCAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 954865 102 + 1946073 CAAAGAAGCATG------CACT-------------------------------------------CCTTAT--AAATTTTACTTTAAAATCATGTGTAATGCTCCCCA-CATCATC--CCCCA--CCTCTAAA--------------------AAG-AAAAAATCAATAAATAAATCAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1981503 123 - 2117846 CAAAGAATCATG------TACT-------------------------------------------TCTTAT--AAACTTTACTTTAAAATCAAGTGTAATGCTGCCCA-CATCGTCC-CCTCA--ACTCTAAAAAGGaaaacaaaacaaaacaaaa-aaaaaATCAAGAAATAAATCAT i calJac3.chrUn_GL286373 I 5 C 0 s saiBol1.JH378157 8892598 113 - 16357246 CAAAGAATCATG------GACT-------------------------------------------CTTTATAAAAACTTTACTTTAAAATCAAGTGTAATGCTGCCCA-TATCATCC-CCCTG--ACTCTAAAAAAGAAa------------aata-aataaataaataaataaatCAT i saiBol1.JH378157 I 5 C 0 s cebCap1.NW_016107750v1 1378333 117 - 1807191 CAAAGAATCATG------TACT-------------------------------------------CCTTCT--AAACTTTTCTTTAAAATCAAGTGTAATGCTGCCCA-TATAATCC-CTCCA--TCTCTaaaaaagaaaaaaaaa------aaaa-aaaaaaaaaaGAAATAAATCAT i cebCap1.NW_016107750v1 I 321 C 0 s aotNan1.NW_018512383v1 56128 108 + 5963231 CAAAGAATCATG------TACT-------------------------------------------CCTTAT--AAACTTTACTTTAAAATCAAGTGTAATGCTGCCCA-CATCATCC-CCTCA--ACTCTAAAAAGG---------------AAAA-AAAAAATCAAGAAATAAATCAT i aotNan1.NW_018512383v1 I 5 C 0 s mm10.chr15 82844124 103 + 104043685 CAGAAAGTACTACTACTCTATT-------------------------------------------TCTTCT--AAGTTTTACTTTTAAATCTGTTATAATGTGCCTC--TAACATC--TTTTA-------AAA-------------------AAAA-AAAAATTCAGGAAACAGGCTGC i mm10.chr15 I 1 C 0 s canFam3.chr10 46124675 142 - 69331447 ccagagatcatg------acctgagctgaaatcaagagtcagacttgactgagtcacccaggtgccccTGT--AAGTTTTATTTTAATATCAGGTGTAAAGTTTCTCT-CATGAGCC-TTCTA--TCCCTAA-------------------------AAGAAATGAAAAAACAGACTGT i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 106209 883 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5109168 71 - 6317780 I e micMur3.chr7 5745389 390 + 108171978 I a score=1140163.000000 s hg38.chr22_GL383582v2_alt 113620 81 + 162811 AGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA s panTro5.chr22 28893559 81 + 37823149 AGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168130 81 + 50109623 AGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3190955 81 + 4464012 AGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686707 81 - 115148730 AGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84302576 81 + 92844088 AGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87648938 81 - 96509753 AGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7145853 81 - 13098629 AGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4105694 81 - 4483953 AGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736048 81 + 33263144 AGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017017 81 - 14338769 AGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 954967 81 + 1946073 AGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCCGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1981626 81 - 2117846 AGAAAAATTTGAGTCCTTCTATTTGTCATGATTTATTCTATAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8892711 78 - 16357246 AGTAAAATTTGAGTC---CTATTTGTCATGATTTCTTCTATAAG----GTAATACATGCAATAAAATTCAAAATTGAAAATTTCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1378450 81 - 1807191 AGTAAAATTTGAGTCCTTCTATTCGTCATGATTTATTCTATAAG----GTAATATATGCAATAAAATTCAGAACTGAAAATTTCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 56236 78 + 5963231 AGTAAAATTTGAGTC---CTATCTGTCATGATTTATTCTATAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCA i aotNan1.NW_018512383v1 C 0 I 2469 s micMur3.chr7 5745779 73 + 108171978 AGTACAATTAGAGTCCTTCAATTTGTCATGATGTATTTTGT-----------TATATGCAA-AAAATTCAAAACTGAAAATTTCA i micMur3.chr7 I 390 C 0 s proCoq1.NW_012136747v1 5109239 80 - 6317780 AGTAAAATTAGAGTCCTTCGATTTGTCATAATTTATTTTGTAAG----GTAATGTATGCAA-AAAATTGAAAACTGAAAATTTCA i proCoq1.NW_012136747v1 I 71 C 0 s mm10.chr15 82844227 84 + 104043685 AGGAAACATATAGTTCTTCAGTTTGTCATAAC-TGTTCTATAAGattaataatatattcaataaaattaaaaaCTGAGAAGTTCA i mm10.chr15 C 0 I 1 s canFam3.chr10 46124817 72 - 69331447 AGGAAAACT---------CAATTTATCACAATTTACCCTGTAGC----ATAATAGAAGCAATAAAATTCTAAATTGCAAATTTTA i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 106209 883 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C a score=22296.000000 s hg38.chr22_GL383582v2_alt 113701 3 + 162811 --CTT s panTro5.chr22 28893640 3 + 37823149 --CTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168211 3 + 50109623 --CTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191036 3 + 4464012 --CTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686788 3 - 115148730 --CTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84302657 3 + 92844088 --CTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649019 3 - 96509753 --CTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7145934 3 - 13098629 --CTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4105775 3 - 4483953 --CTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736129 3 + 33263144 --CTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017098 3 - 14338769 --CTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955048 3 + 1946073 --CTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1981707 3 - 2117846 --TTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8892789 3 - 16357246 --TTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1378531 3 - 1807191 --CTT i cebCap1.NW_016107750v1 C 0 I 496 s micMur3.chr7 5745852 3 + 108171978 --CTT i micMur3.chr7 C 0 I 2 s proCoq1.NW_012136747v1 5109319 3 - 6317780 --CTT i proCoq1.NW_012136747v1 C 0 I 2 s mm10.chr15 82844312 2 + 104043685 --CT- i mm10.chr15 I 1 I 7 s canFam3.chr10 46124889 3 - 69331447 TGC-- i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e dasNov3.JH570235 106209 883 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C a score=251.000000 s hg38.chr22_GL383582v2_alt 113704 1 + 162811 -G s panTro5.chr22 28893643 1 + 37823149 -G i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168214 1 + 50109623 -G i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191039 1 + 4464012 -G i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686791 1 - 115148730 -G i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84302660 1 + 92844088 -G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649022 1 - 96509753 -G i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7145937 1 - 13098629 -G i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4105778 1 - 4483953 -G i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736132 1 + 33263144 -G i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017101 1 - 14338769 -G i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955051 1 + 1946073 -G i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1981710 1 - 2117846 -A i calJac3.chrUn_GL286373 C 0 I 504 s saiBol1.JH378157 8892792 1 - 16357246 -A i saiBol1.JH378157 C 0 I 511 s micMur3.chr7 5745857 1 + 108171978 -G i micMur3.chr7 I 2 C 0 s proCoq1.NW_012136747v1 5109324 1 - 6317780 -G i proCoq1.NW_012136747v1 I 2 C 0 s mm10.chr15 82844321 1 + 104043685 -A i mm10.chr15 I 7 C 0 s canFam3.chr10 46124892 1 - 69331447 T- i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e dasNov3.JH570235 106209 883 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e cebCap1.NW_016107750v1 1378534 496 - 1807191 I a score=201888.000000 s hg38.chr22_GL383582v2_alt 113705 15 + 162811 ATTCCTTAGAATTTG s panTro5.chr22 28893644 15 + 37823149 ATTCCTTAGAATTTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168215 15 + 50109623 ATTCCTTAGAATTTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191040 15 + 4464012 ATTCCTTAGAATTTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686792 15 - 115148730 ATTCCTTAGAATTTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84302661 15 + 92844088 ATCCTTTAGAATTTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649023 15 - 96509753 ATCCTTTAGAATTTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7145938 15 - 13098629 ATCCTTTAGAATTTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4105779 15 - 4483953 ATCCTTTAGAATTTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736133 15 + 33263144 ATCCTTTAGAATTTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017102 15 - 14338769 ATCCTTTAGAATTTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955052 15 + 1946073 ATCCTTTAGAATTTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982215 15 - 2117846 ATTCCCTAGAACTTG i calJac3.chrUn_GL286373 I 504 C 0 s saiBol1.JH378157 8893304 15 - 16357246 ATTCCTTAGAACTTG i saiBol1.JH378157 I 511 C 0 s cebCap1.NW_016107750v1 1379030 15 - 1807191 ATTCCTTAGAACTTG i cebCap1.NW_016107750v1 I 496 C 0 s micMur3.chr7 5745858 15 + 108171978 ATTCCTTAAAATTTG i micMur3.chr7 C 0 I 425 s proCoq1.NW_012136747v1 5109325 15 - 6317780 ATTCCTTAGAATTTG i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82844322 15 + 104043685 ATTCCTTAGAATTTG i mm10.chr15 C 0 C 0 s canFam3.chr10 46124893 15 - 69331447 ATTCCTTAGCATTTA i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e dasNov3.JH570235 106209 883 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C a score=27149.000000 s hg38.chr22_GL383582v2_alt 113720 2 + 162811 GA s panTro5.chr22 28893659 2 + 37823149 GA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168230 2 + 50109623 GA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191055 2 + 4464012 GA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686807 2 - 115148730 GA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84302676 2 + 92844088 GA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649038 2 - 96509753 GA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7145953 2 - 13098629 GA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4105794 2 - 4483953 GA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736148 2 + 33263144 GA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017117 2 - 14338769 GA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955067 2 + 1946073 GA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982230 2 - 2117846 GA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8893319 2 - 16357246 GA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379045 2 - 1807191 GA i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5109340 2 - 6317780 GA i proCoq1.NW_012136747v1 C 0 I 387 s mm10.chr15 82844337 2 + 104043685 GG i mm10.chr15 C 0 I 1 s canFam3.chr10 46124908 2 - 69331447 GA i canFam3.chr10 C 0 I 4 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e dasNov3.JH570235 106209 883 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e micMur3.chr7 5745873 425 + 108171978 I a score=151413.000000 s hg38.chr22_GL383582v2_alt 113722 14 + 162811 CGAAA---TCCTGAAAG s panTro5.chr22 28893661 14 + 37823149 CGAAA---TCCTGAAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168232 14 + 50109623 CGAAA---TCCTGAAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191057 14 + 4464012 CGAAA---TCCTGAAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686809 14 - 115148730 CGAAA---TCCTGAAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84302678 14 + 92844088 CAAAA---TCCTGAAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649040 14 - 96509753 CAAAA---TCCTGAAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7145955 14 - 13098629 CAAAA---TCCTGAAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4105796 14 - 4483953 CAAAA---TCCTGAAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736150 14 + 33263144 CAAAA---TCCTGAAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017119 14 - 14338769 CAAAA---TCCTGAAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955069 14 + 1946073 CAAAA---TCCTGAAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982232 14 - 2117846 CAAAA---TCCTGAAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8893321 14 - 16357246 CAAAA---TCCTGAAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379047 14 - 1807191 CAAAA---TCCTGAAAG i cebCap1.NW_016107750v1 C 0 C 0 s mm10.chr15 82844340 17 + 104043685 GGAAACCTTCCTGAAAG i mm10.chr15 I 1 C 0 s canFam3.chr10 46124914 14 - 69331447 CCAAG---TCCTAAGAG i canFam3.chr10 I 4 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e dasNov3.JH570235 106209 883 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5109342 387 - 6317780 I e micMur3.chr7 5745873 425 + 108171978 I a score=2653141.000000 s hg38.chr22_GL383582v2_alt 113736 319 + 162811 AAAATGAACC--TTTTCTCTGGAAATTTAGTGTCAATGTCATCATGCAGTGATATAAAAAGATATACCACAC-----AGTGTTAAGAAAAACAGGTA---AATTAGA------TACAAC-TCTCTGCTATATACTGAAAGCCATGGGAACAG-------------GGCGCCACCG-------CCTAGAGA----------GTGAGAAATGAAGATGGGTCCCAGCAGAAG------------TAACAAAAAGCAAGTGC---TTGCCAGAGAGA----------------------------GGGG-GCTG--GGAGGGAGAGGAG------------AATGGAGAAAGGGAGTGTG-GGAATGTGAGAAAGGGCAGTTGTA----GCAAGCACAGAGGAAGAACAAT------------------CA------GGTA------GGGGTG-----------GG-------GGTGAGG s panTro5.chr22 28893675 331 + 37823149 AAAATGAACC--TTTTCTCTGGAAATTTAGTGTCAATGTCATCATGCAGTGATATAAAAAGATATACCACAC-----AGTGTTAAGAAAAACAGGTA---AATTAGA------TACAAC-TCTCTGCTATATACTGAAAGCCATGGGAACAG-CAAGGGGAACAGGGCGCCACCG-------CCTAGAGA----------GTGAGAAATGAAGATGGGTCCCAGCAGAAG------------TAACAAAAAGCAAGTGC---TTGCCAGAGAGA----------------------------GGGG-GCTG--GGAGGGAGAGGAG------------AATGGAGAAAGGGAGTGTG-GGAATGTGAGAAAGGGCAGTTGTA----GCAAGCACAGAGGAAGAACAAT------------------CA------GGTA------GGGGTG-----------GG-------GGTGAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168246 331 + 50109623 AAAATGAACC--TTTTCTCTGGAAATTTAGTGTCAATGTCATCATGCAGTGATATAAAAAGATATACCACAC-----AGTGTTAAGAAAAACAGGTA---AATTAGA------TACAAC-TCTCTGCTATATACTGAAAGCCATGGGAACAG-CAAGGCGAACAGGGCGCCACCG-------CCTAGAGA----------GTGAGAAATGAAGATGGGTCCCAGCAGAAG------------TAACAAAAAGCAAGTGC---TTGCCAGAGAGA----------------------------GGGG-GCTG--GGAGGGAGAGGAG------------AATGGAGAAAGGGAGTGTG-GGAATGTGAGAAAGGGCAGTTGTA----GCAAGCACAGAGGAAGAACAAT------------------CA------GGTA------GGGGTG-----------GG-------GGTGAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191071 331 + 4464012 AAAATGAACC--TTTTCTCTGGAAATTTAGTGTCAATGTCATCGTGCAGTGATATAAAAAGATATACCACAC-----AGTGTTAAGAAAAACAGGTA---AATTAGA------TACAAC-TCTCTGCTATATACTGAAAGCCATGGGAACAG-CAAGGGGAACAGGGTGCCACCG-------CCTAGAGA----------GTGAGAAATGAAGATGGGTCCCAGCAGAAG------------TAACAAAAAGCAAGTGC---TTGCCAGAGAGA----------------------------GGGG-GCTG--GGAGGGAGAGGAG------------AATGGAGAAAGGGAGTGTG-GGAATGTGAGAAAGGGCAGTTGTA----GCAAGCACAGAGGAGGAAGAAT------------------CA------GGTA------GGGGTG-----------GG-------GGTGAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106686823 336 - 115148730 ACAATGAACA--CTTTCTCTGGAAATTTAGTGTCAATGTCATCATGTAGTGATATAAAAAGATATAC--CAC-----AGTGTTAAGAAAAACAGGTA---AATTAGA------TACAAC-TCTCTGCTATATACTGAAAGCCATGGGAACAG-CAAGGGGAACAGGGCGCCACCG-------CCTACAGA----------GTGAGAAATGAAGATGGGTCCCAGCAGAGG------------TAACAAACAGCAAGTGC---TTGCCAGAGAGA----------------------------GGGG-GCTG--AGAGGGAGAGGAG------------AACGGAGAAAGGGAGTGTG-GGAATGTGAGAAAGGGCAGTTGTA----GCAAGCGCAGAGGAGGAACAAT------------------CA------GGTA------GCGGTG-----------GGGGGTAGCGGTGAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84302692 332 + 92844088 AA----AACC--CTTTCTCTGGAAATTTAGTGTCAGTGTCATCATGTAGTGATATAAAAAGATATACCACAT-----AGTGTTAAGAAAAACAGGTA---AATTAGA------TACAAC-TCTCTGCTATATACTGAAAGCTAAGGAAATAG-CAAGGGGAACAGGGCGCCACCG-------CCTAGAGA----------GTGAGAAATGAAGATGGGTCCCAGCTGAAG------------TAACAAACAGCAAGTGC---TTGCCAGAGAGA----------------------------GGGG-GCTG--GGAGGGAGAGGAG------------AATGGAGAAAGGGAGCGTG-GGAATGTGAGAAAGGGCAG-TGTA----GCAGGTGCAGAGAAGGAACAAT------------------CA------GGTA------GGGGTG-----------GG-GGTGGGGGTGAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649054 332 - 96509753 AA----AACC--CTTTCTCTGGAAATTTAGTGTCAATGTCATCATGTAGTGATATAAAAAGATATACCACAT-----AGTGTTAAGAAAAACAGGTA---AATTAGA------TACAAC-TCTCTGCTACATACTGAAAGCTAAGGAAATAG-CAAGGGGAACAGGGCGCCACCG-------CCTAGAGA----------GTGAGAAATGAAGATGGGTCCCAGCTGAAG------------TAACAAACAGCAAGTGC---TTGCCAGAGAGA----------------------------GGGG-GCTG--GGAGGGAGAggag------------aatggagaaagggagcgtg-ggaatgtgagaaaggGCAG-TGTA----GCAGGTGCAGAGAAGGAACAAT------------------CA------GGTA------GGGGTG-----------GG-GGTGGGGGTGAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7145969 332 - 13098629 AA----AACC--CTTTCTCTGGAAATTTAGTGTCAATGTCATCATGTAGTGATATAAAAAGATATACCACAT-----AGTGTTAAGAAAAACAGGTA---AATTAGA------TACAAC-TCTCTGCTATATACTGAAAGCTAAGGAAATAG-CAAGGTGAACAGGGCGCCACCG-------CCTAGAGA----------GTGAGAAATGAAGATGGGTCCCAGCTGAAG------------TAACAAACAGCAAGTGC---TTGCCAGAGAGA----------------------------GGGG-GCTG--GGAGGGAGAggag------------aatggagaaagggagcgtg-ggaatgtgagaaaggGCAG-TGTA----GCAGGTGCAGAGGAGGAACAAT------------------CA------GGTA------GGGGTG-----------GG-GGTGAAGGTGAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4105810 338 - 4483953 AA----AACC--CTTTCTCTGGAAATTTAGTGTCAATGTCATCATGTAGTGATATAAAAAGATATACCACAT-----AGTGTTAAGAAAAACAGGTA---AATTCGA------TACAAC-TCTCTGCTATATACTGAAAGCTAAGGAAATAG-CAAGGGGAACAGGGCGCCACCG-------CCTAGAGA----------GTGAGAAATGAAGATGGGTCCCAGCTGAAG------------TAACAAACAGCAAGTGC---TTGCCAGAGAGA----------------------------GGGG-GCTG--AGAGGGAGAggag------------aatggagaaagggagcatg-ggaatgtgagaaaggGCAG-TGTA----GCAGGTGCAGAGGAGGAACAAT------------------CA------GGTAggggtgggggtg-----------gg-ggtgggggtgggA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736164 335 + 33263144 AA----AACC--CTTTCTCTGGAAATTTAGTGTCAATGTCATCATGTAGTGATATAAAAAGATATACCACAT-----AGTGTTAAGAAAAACAGGTATTTAATTAGA------TACAAC-TCTCTGCTATATACTTAAAGCTAAGGAAACAG-CAAGGGGAACAGGGCGCCACCG-------CCTAGAGA----------GTGAGAAATGAAGATGGGTCCCAGCTGAAG------------TAACAAACAGCAAGTCC---TTGCCAGAGAGA----------------------------GGGG-GCTG--GGAGGGAGAGGAG------------AATGGACAAAGGGAGTGTG-GGAATGTGAGAAAGGGCAG-TGTA----GCAGCTGCAGAGGAGGAACAAT------------------CA------GGTA------GGGGTG-----------GG-GGTGGGGGTGAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017133 332 - 14338769 AA----AACC--CTTTCTCTGGAAATTTAGTGTCAATGTCATCATGTAGTGATATAAAAAGATATACCACAT-----AGTGTTAAGAAAAACAGGTA---AATTAGA------TACAAC-TCTCTGCTATATACTGAAAGCTAAGGAAATAG-CAAGGGGAACAGGGCGCCACCG-------CCTAGAGA----------GTGAGAAATGAAGATGGGTCCCAGCTGAAG------------TAACAAACAGCAAGTGC---TTGCCAGAGAGA----------------------------GGGG-GCTG--GGAGGGAGAggag------------aatggagaaagggagcatg-ggaatgtgagaaaggGCAG-TGTA----GCAGGTGCAGAGGAGGAACAAT------------------CA------GGTA------GGGGTG-----------GG-GGTGGGGGTGAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955083 332 + 1946073 AA----AACC--CTTTCTCTGGAAATTCAGTGTCAATGTCATCATGTAGTGATATAAAAAGATATACCACAT-----AGTGTTAAGAAAAACAGGTA---AATTAGA------TACAAC-TCTCTGCTATATACTGAAAGCCAAGGAAATAG-CAAGGGGAACAGGGCGCCACTG-------CCTAGAGA----------GTGATAAATGAAGATGGGTCCCAGCTGAAG------------TAACAAACAGCAAGTGC---TTGCCagagagg----------------------------gagg-gctg--ggagggagaggag------------aatggagaaagggagtgtg-ggaATGTGAGAAAGGGCAG-TGTA----GCAGGTGCAGAGGAGGAACAAT------------------CA------GGTA------GGGGTG-----------AG-GGTGGGGGTGAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982246 329 - 2117846 AAAATGAACC---TTTCTCTGGAAATTTAGTGTCAACGTCATTATGTAGTGATATAAAAACATCTACTACAC-----AGTATTAGGAAAAACAGGTA---AATTAGA------CACAA---CTCTGCTATATACTGAAAGCCATGGGAACAG-AAAGGGGAATAGGGTGCCACCGCCCTAACCCT-GAGA----------GTGTGGAAGGAAGATGGGTCCCAGCAGTGG------------TAACAAAGAACAAGTGC---TTTCAAG---GA----------------------------GCAG-GTC---GGAGGGAG------------------ATGGAGAAAGGGAGTGTG-GGAATGCTAGAAAGGGCAG-TGTA----GCAGGTGCCCAGGAAAAACAAT------------------CA------GGCA------GGAGTC-----------GG-GGTGGGGGTGAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8893335 328 - 16357246 AAAATGAACC---TTTCTCTGGAAATTTAGTGTCAACGTCATTATGTAGTGATATAACAACATCTACCACAC-----AGTGTTAGGAAAAACAGGTA---AATTAGG------TACAAC-TCTCTGCTATATACTCAAAGTCATGGGAACAG-CAAGTGGAATAGGGTGTCACTGCCCTACCCCTGGAGA----------GTGTGGAAGGAAGATGGGTCCCAGCAGTAA------------TAACAAAGAACAAGTGC---TTTCGAG---GG----------------------------GTGG-GTTG--GGGGGGAG------------------ATGGAGAAAGGGAGTGTG-GGAATGCTAGAAAGGGCAC-TGTA----GCAGGTGCCCAGGAAAAACAAT------------------CA------GGTA------GGGGT-----------------TGGTAGTGAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379061 340 - 1807191 AAAATGAACC---TTTCTCTGGAAATTTAGTGTCAACGTCATTATGTAGTGATATAAAAACATCTACCACAC-----AGTGTTAGGAAAAACAGGTA---AATTAGA------TACAAC-TCTCTGCTATATACTGAAAGCCATGGGAACAG-CAAGGGGAATAGGGTGCCACCGCCCTACCCCTGGAGA----------GTGTGGAAGGAAGATGGGTCCCAGCAGTGG------------TAACAAAGAACAAGTGC---TTGCGAG---GG----------------------------GCGG-GTGGGCGGGGGGAG------------------ATGGAGAAAGAGAGTGTG-GGAATGCTAGAAAGGGCAC-TGTA----GCAGGTGCCCAGGAAAAACAAT------------------CA------ggta------agagtc------ggggtgg-ggtgagggtgagg i cebCap1.NW_016107750v1 C 0 C 0 s mm10.chr15 82844357 303 + 104043685 GG--TTAACT--CTTTCTCTAGATGTTTAACACTAATGATATTATACAGAGGTA----AAGAAACGCCATAC-----AGTTGTAA-AGAAAGAGGTA---AATGAAATAAT--TACAACTTTTCTCCAGTAAGCTGCAAGTTGTGGTGACAGATGAAAAGGCCTTGAGGCCTGCC-------CTTAGAGATCTACTTAT-GTACACAA-GGAGACAGGTATAAGCTTA---------------CACTGTAAGCAAGTAG---CTGTAAAAATGG----------------------------GGGGCAATG--AGGGTGAGAGGAG------------ATAGAGGAGAGAGGAAGCA-GAACT----GGAATGCCAC-TGTGACCTGCATGTGTAGT-------------------------------------------------------------------------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46124928 335 - 69331447 AAAATTAACC--TTTTCTCTGGAGGTTTAGTCTCAAGAACATCATGTAGTGATATAAGTGAGCACAC-AGGT-----AGTGTTAAGAAAAACAGGT----AATAAGATAATCATACAAC-TTTGTGCTACTTGCTGAAAATTACAGGAACAG-AGGAATGAAT-GAACACTGGTA-------CCTGAATGTGTTAATATGGTCAGGCTGGGACAGAAGTGTGAGCTGCAG------------CAACAAAGATCAAATGACAGTCTCCAgagggg----------------------------gcgg-aaga--ggaaagagag------------------agcgtaaagaagccag-gggaggaggagaagaatga-ggag----g--ggTACAGGGAAGGATCATT------------------CACTGTGGGGCA------CGTGTA--------------------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 107092 396 + 1056298 AAAATTAACCTTTTTTCTCCAGAGATTTA--CTCAATGTCATCATGTAGTGATATAAAAATAGATATCACACCAGTAAGTGTT--------CAGATA---AGTT---------TACAAC-TTTCTGCTA--------AGTTTGTGGCAACAG---AGATGAATGG---ACCTTGG-------TCTTTATG----------TTTGTAATGGCAGGCAGGCTAGGGTGGAAGTATGAGTCCTGATAACAAAGAGCAAGTAT---ATGCCAgagggagagagacagggagagagggattggggtggggg-gttg--ggggggggatgaggtgaaggagtgtgcagggggaagagagtgtgaagagtgggaagcaggg----agta----agagggggaggggagggaggaTGCTCTAAGGGGAGAAAGGGA------GGTA------CTGGTCACCACTGGACAGA-TGTGTGGGGGAGG i dasNov3.JH570235 I 883 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5109342 387 - 6317780 I e micMur3.chr7 5745873 425 + 108171978 I a score=21204.000000 s hg38.chr22_GL383582v2_alt 114055 2 + 162811 -TA s panTro5.chr22 28894006 2 + 37823149 -TA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168577 2 + 50109623 -TA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191402 2 + 4464012 -TA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687159 2 - 115148730 -TA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84303024 2 + 92844088 -TA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649386 2 - 96509753 -TA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7146301 2 - 13098629 -TA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4106148 2 - 4483953 -TA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736499 2 + 33263144 -TA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017465 2 - 14338769 -TA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955415 2 + 1946073 -TA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982575 2 - 2117846 -TA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8893663 2 - 16357246 -TA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379401 2 - 1807191 -TA i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5746298 2 + 108171978 -TA i micMur3.chr7 I 425 C 0 s mm10.chr15 82844660 2 + 104043685 -TA i mm10.chr15 C 0 C 0 s canFam3.chr10 46125263 2 - 69331447 -TA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 107488 2 + 1056298 TT- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5109342 387 - 6317780 I a score=286716.000000 s hg38.chr22_GL383582v2_alt 114057 19 + 162811 CTGGAGTTAGGAGCAGAGA s panTro5.chr22 28894008 19 + 37823149 CTGGAGTTAGGAGCAGAGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168579 19 + 50109623 CTGGAGTTAGGAGCAGAGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191404 19 + 4464012 CTGGAGTTAGGAGCAGAGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687161 19 - 115148730 CTGGAGTTAGGAGCAGAGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84303026 19 + 92844088 CTGGAGTTAGGAGCAGAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649388 19 - 96509753 CTGGAGTTAGGAGCAGAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7146303 19 - 13098629 CTGGAGTTAGGAGCAGAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4106150 19 - 4483953 CTGGAGTTAGGAGCAGAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736501 19 + 33263144 CTGGAGTTAGGAGCAGAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017467 19 - 14338769 CTGGAGTTAGGAGCAGAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955417 19 + 1946073 CTGGAGTTAGGAGCAGAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982577 19 - 2117846 CTAGAGTTAGGAGCAGAGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8893665 19 - 16357246 CTGGAGTTAGGAGCAGAGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379403 19 - 1807191 TTGGAGTTAGGAGCAGAGA i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5746300 19 + 108171978 CTGGAGTTAAGAGCAGAGA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5109729 19 - 6317780 CTGGAGTTAAGAGCAGAGA i proCoq1.NW_012136747v1 I 387 C 0 s mm10.chr15 82844662 19 + 104043685 CTGGAGTTAAAAACAAGAG i mm10.chr15 C 0 C 0 s canFam3.chr10 46125265 18 - 69331447 -TGGTGAGTCAAACAGAGA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 107490 19 + 1056298 CTGCAGTTAAGAGCAGAGA i dasNov3.JH570235 C 0 I 721 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e otoGar3.GL873526 36317341 0 - 42659167 C a score=212766.000000 s hg38.chr22_GL383582v2_alt 114076 18 + 162811 ACAGGAGTTGAAGGG---AGC s panTro5.chr22 28894027 18 + 37823149 ACAGGAGTTGAAGGG---AAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168598 18 + 50109623 ACAGGAGTTGAAGGG---AGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191423 18 + 4464012 ACAGGAGTTGAAGGG---AGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687180 18 - 115148730 ACAGGAGTTGAAGGG---AGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84303045 18 + 92844088 ATAGGAGTTGAAGGG---AGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649407 18 - 96509753 ATAGGAGTTGAAGGG---AGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7146322 18 - 13098629 ATAGGAGTTGAAGGG---AGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4106169 18 - 4483953 ATAGGAGTTGAAGGG---AGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736520 18 + 33263144 ATAGGAGTTGAAGGG---AGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017486 18 - 14338769 ATAGGAGTTGAAGGG---AGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955436 18 + 1946073 ATAGGAGTTGAAGGG---AGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982596 18 - 2117846 ACAGGAGTTGAAGGG---AGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8893684 18 - 16357246 ACAGGAGTTGAAGGG---AGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379422 18 - 1807191 ACAGGAGTTGAAGGG---AGT i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5746319 18 + 108171978 ACAAGAGGTGAAGGG---AGC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5109748 18 - 6317780 ACAAGAGGTGAGGGG---AGC i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82844681 18 + 104043685 ATACAAGCTCTAGTG---AGA i mm10.chr15 C 0 C 0 s canFam3.chr10 46125283 21 - 69331447 CCAGGAGTTTACATGCAAAGG i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e dasNov3.JH570235 107509 721 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C a score=76123.000000 s hg38.chr22_GL383582v2_alt 114094 5 + 162811 CTTCA s panTro5.chr22 28894045 5 + 37823149 CTTCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168616 5 + 50109623 CTTCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191441 5 + 4464012 CTTCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687198 5 - 115148730 CTTCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84303063 5 + 92844088 CTTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649425 5 - 96509753 CTTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7146340 5 - 13098629 CTTCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4106187 5 - 4483953 CTTCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736538 5 + 33263144 CTTCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017504 5 - 14338769 CTTCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955454 5 + 1946073 CTTCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982614 5 - 2117846 CTTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8893702 5 - 16357246 CTTCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379440 5 - 1807191 CTTCA i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5746337 5 + 108171978 CTTCA i micMur3.chr7 C 0 I 825 s proCoq1.NW_012136747v1 5109766 5 - 6317780 CTTCA i proCoq1.NW_012136747v1 C 0 I 86 s mm10.chr15 82844699 5 + 104043685 TCTGG i mm10.chr15 C 0 C 0 s canFam3.chr10 46125304 5 - 69331447 CTTCA i canFam3.chr10 C 0 I 7 s dasNov3.JH570235 108230 5 + 1056298 CTTTA i dasNov3.JH570235 I 721 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e otoGar3.GL873526 36317341 0 - 42659167 C a score=1153930.000000 s hg38.chr22_GL383582v2_alt 114099 122 + 162811 CCAGGA-TGGGGGC-------------CTTGCCAGGCCCTGG--AAATGACCACCTTCAAGGAAC-------ATATAGTTGAGAATTTAGAGAGCATGTAGACTGGTGGCTCTATTTTACAGTTAAACTAGAGAGCCTACCTTTC s panTro5.chr22 28894050 122 + 37823149 CCAGGA-TGGGGGC-------------CTTGCCAGGCCCTGG--AAATGACCACCTTCAAGGAAC-------ATATAGTTGAGAATTTAGAGAGCATGTAGACTGGTGGCTCTATTTTACAGTTAAACTAGAGAGACTACCTTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168621 122 + 50109623 CCAGGA-TGGGGGC-------------CTTGCCAGGCCCTGG--AAATGACCACCTTCAAGGAAC-------ATATAGTTGAGAATTTAGAGAGCATGTAGACTGGTGGCTCTATTTTACAGTTAAACTAGAGAGACTACCTTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191446 122 + 4464012 CCAGGA-TGGGGGC-------------CTTGCCAGGCCCTGG--AAATGACCACCTTCAAGGAAC-------ATATAGTTGAGAATTTAGAGAGCATGTAGACTGATGGCTCTATTTTACAGTTAAACTAGAGAGACTACCTTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687203 122 - 115148730 CCAGGA-TGGGGGC-------------CTTGCCAGGCCCTGG--AAATTACCACCTTCAAGGAAC-------ATATAGTTGAGAATTTAGAGAGCATGTAGACTGATGGCTCTGTTTTACAGTTAAACTAGAGAGACCACCTTTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84303068 122 + 92844088 CCAGGA-TGGGGGC-------------CTTGCCAGGCCCTGG--AAATGACCACCTTCAAGGAAC-------ATATAGTTGAGAATTTAGAGAGCATATAGACTGATGGCTCTGTTTTATAGTTAAACTAAAGAGACTACCTTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649430 122 - 96509753 CCAGGA-TGGGGGC-------------CTTGCCAGGCCCTGG--AAATGACCACCTTCAAGGAAC-------ATATAGTTGAGAATTTAGAGAGCATATAGACTGATGGCTCTGTTTTATAGTTAAACTAAAGAGACTACCTTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7146345 122 - 13098629 CCAGGA-TGGGGGC-------------CTTGCCAGGCCCTGG--AAATGACCACCTTCAAGGAAC-------ATATAGTTGAGAATTTAGAGAGCATATAGACTGATGGCTCTGTTTTATAGTTAAACTAAAGAGACTACCTTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4106192 122 - 4483953 CCAGGA-TGGGGGC-------------CTTGCCAGGCCCTGG--AAATGACCACCTTCAAGGAAC-------ACATAGTTGAGAATTTAGAGAGCATATAGACTGATGGCTCTATTTTATAGTTAAACTAAAGAGACTACCTTTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736543 122 + 33263144 CCAGGA-TGGGGGC-------------CTTGCCAGGCCCTGG--AAATGACCACCTTCAAGGAAC-------ATATAGTTGAGAATTTAGAGAGCATGTAGACTGATGGCTCTATTTTATAGTTAAACTAGAGAGACTACCTTTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017509 122 - 14338769 CCAGGA-TGGGGGC-------------CTTGCCAGGCCCTGG--AAATGACCACCTTCAAGGAAC-------ATATAGTTGAGAATTTAGAGAGCATATAGACTGATGGCTCTATTTTATAGTTAAACTAAAGAGACTACCTTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955459 122 + 1946073 CCAGGA-TGGGGGC-------------CTTGCCAGGCCCTGG--AAATGACCACCTTCAAGGAAC-------ATATAGTTGAAAATTTAGAGAGCATGTAGACTGATGGCTCTATTTTATAGTTCAACTAGAGAGACTACCTTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982619 133 - 2117846 CCAGAA-TGGGGGCGAACAGTAGCCAAGTTGCCAGGCTCTGG--AAATGACCACCTTCAAGAA---------ACACAGTTGAGAATTTAGGGAGCACGTAGACTAATGGTTCTATTCTACAGTTAAACTAGAGAGAGTACCTTTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8893707 135 - 16357246 CCAGGA-TGGGGGCGAATAGCAGCCAAGTTGCCAGGCTCTGG--AAATCATCACCTTCAAGGAAC-------ACACAGTTGAGAATTCAGGGAGCATGTAGACTCATGCCTCTATTTTACAGTTAAACTGGAGAGAGTACCTTTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379445 135 - 1807191 CCAGGA-TGGGGGCGAACAGCAGCCAAGTTGCCAGGCTCTGG--AAATCACCACTTTCATGGAAC-------ACGCAGTTGAGAATTTAGGGAGCATGCAGACTAATGGCTCTATTTTACAGTTAAACTAGACAGAGTACCTTTC i cebCap1.NW_016107750v1 C 0 C 0 s mm10.chr15 82844704 119 + 104043685 CTGGCAGCGGCAGT-------------CTTGTCAGGCTTTGG--AAAACACTCATTTTAAAAAGC-------ATGTAAATGTGAACTCAGAGATCATGGCGAAC-ACAGCT-TATTTCATGGTCAA--CAAGAAAGCTGACTTTC i mm10.chr15 C 0 C 0 s canFam3.chr10 46125316 123 - 69331447 CTGGGC-TGGTAGC-------------AGTGT----CCTTGGGTGGGTGGCAGCCTACTACTAACCTCGGGAGTACAGATGGAAATTCAGGGAACATATAGGATAATGCCTTTATCTCACACATAA-CCAGAGAGGCTAACT--- i canFam3.chr10 I 7 C 0 s dasNov3.JH570235 108235 111 + 1056298 CCAGGA-T---ATC-------------CTTGCTAGGCTTTGA--GAACTACAAACACTAAGGAAC-------ACACAGATGGGCATTCAGAGAACAT-TAGGAGAGAGCCTTTTTATTACAGATAGCC---AGAGGCTAAC---- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5109771 86 - 6317780 I e micMur3.chr7 5746342 825 + 108171978 I a score=840517.000000 s hg38.chr22_GL383582v2_alt 114221 89 + 162811 TGACTTGGCTGTTTTGATGTTTTAATATGTGA-TTTCATTTTCATAATGTAATCAATCTA----------TTTTATATTTTCCAAATCATG-TTTTCCATC s panTro5.chr22 28894172 89 + 37823149 TGACTTGGCTGTTTTGATGTTTTAATATGTGA-TTTCATTTTCATAATGTAATCAATCTA----------TTTTATATTTTCCAAATCATG-TTTTTCATG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168743 89 + 50109623 TGACTTGGCTGTTTTGATGTTTTAATATGTGA-TTTCATTTTCATAATGTAATCAATCTA----------TTTTATATTTTCCAAATCATG-TTTTTCATG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191568 89 + 4464012 TGACCTGGCTGTTTTGATGTTTTAATATGTGA-TTTCATTTTCATAATGCAATCAATCTA----------TTTTATATTTTCCAAATCATG-TTTTTCATC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687325 86 - 115148730 TGACTTGGCTGTTTTGATGTTTTAATATGTGG-TTTCATTTTCATAATG----CAATCTA----------TTTTATATTTTTCAAATCATGTTTTTTTATC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84303190 85 + 92844088 TGACTTGGCTGTTTTGATGTTTTAATATGTGG-TTTCATTTTCATAATG----CAATCTA----------TTTTATATTTTTCAAATCATG-TTTTTCATC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649552 85 - 96509753 TGACTTGGCTGTTTTGATGTTTTAATATGTGG-TTTCATTTTCATAATG----CAATCTA----------TTTTATATTTTTCAAATCATG-TTTTTCATC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7146467 85 - 13098629 TGACTTGGCTGTTTTGATGTTTTAATATGTGG-TTTCATTTTCATAATG----CAATCTA----------TTTTATATTTTTCAAATCATG-TTTTTCATC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4106314 85 - 4483953 TGACTTGGCTGTTTTGATGTTTTAATATGTGG-TTTCATTTTCATAATG----CAATCTA----------TTTTATATTTTTCAAATCATG-TTTTTCATC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736665 85 + 33263144 TGACTTGGCTGTTTTGATGTTTTAATATGTGG-TTTCATTTTCATAATG----CAATCTA----------TTTTATATTTTTCAAATCATG-TTTTTCATC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017631 85 - 14338769 TGACTTGGCTGTTTTGATGTTTTAATATGTGG-TTTCATTTTCATAATG----CAATCTA----------TTTTATATTTTTCAAATCATG-TTTTTCATC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955581 85 + 1946073 TGACTTGGCTGTTTTGATGTTTTAATATGTGG-TTTCATTTTCATAATG----CAATCGA----------TTTTATATTTTTCAAATCATG-TTTTTCATC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982752 87 - 2117846 TGACTCATCCGTTGTGATGTTTTAATATGTGCTTTTCATTTTCATAATGCAATCtattaa----------ttttatatttttaaa---atg-tttttcatc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8893842 88 - 16357246 TGACTCAGCTGTTGTGATGTTTTAATATGTGC-TTTCATTTTCATAATGTAATCTATTAA----------TTTTCTATTTTTCAAAT-ATG-TTTTTCATT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379580 88 - 1807191 TGACTCGGCTGTTGTGATGTTTTAATACGTGC-TTTCATTTTCATAATGCTATCTATTAA----------TTTTATATTTTTCAAAT-ATG-TTTTTCATC i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5109857 96 - 6317780 TGACTTGGCTGTTTTAATGTTTTAACATGCAG-TTGTATTTCCATAAGATAGTCAATCTA---TTAATACTTCTACatttgtcaaatcatg-tttttcatc i proCoq1.NW_012136747v1 I 86 C 0 s mm10.chr15 82844823 94 + 104043685 TGACTTG---ATTCTGTTGTACTAGTAGGCAT-TATCTTATT--TCATGCCACCAGTCTAATCGTGTTGTTTTTAAATTTACTATTTATTT-TATTTCAtt i mm10.chr15 C 0 I 943 s canFam3.chr10 46125439 92 - 69331447 -GATCTG---TTTTTGATGTTTCAACATGCAG-TTAAATTTTCATAATGTCATTGATATA---TTAATTCTTTTACACTTATCAAATCATT-TTTTTTTTT i canFam3.chr10 C 0 I 5 s dasNov3.JH570235 108346 84 + 1056298 TGACCCATCTGTCCTTAAAGCTCAATA----G-TTACACTTCC-TACTGTAATCAATTAA-------TACTTTTACATTTACCAA---ATG-TTTTTCTTC i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e otoGar3.GL873526 36317341 0 - 42659167 C e micMur3.chr7 5746342 825 + 108171978 I a score=139649.000000 s hg38.chr22_GL383582v2_alt 114310 13 + 162811 ACAATTTAAAGTA s panTro5.chr22 28894261 13 + 37823149 ACAATTTAAAGTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168832 13 + 50109623 ACAATTTAAAGTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191657 13 + 4464012 ACAATTTAAAGTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687411 13 - 115148730 ACAATTTAAAGTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84303275 13 + 92844088 ACCACTTAAAGTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649637 13 - 96509753 ACCACTTAAAGTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7146552 13 - 13098629 ACCACTTAAAGTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4106399 13 - 4483953 ACCACTTAAAGTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736750 13 + 33263144 ACCACTTAAAGTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017716 13 - 14338769 ACCACTTAAAGTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955666 8 + 1946073 ACAACT-----TT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982839 13 - 2117846 acaatttaaagta i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8893930 13 - 16357246 ACAATTTAAAGTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379668 13 - 1807191 ACAATTTAAAGTA i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5109953 13 - 6317780 acaatttaaagta i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82845860 13 + 104043685 ATGATTCAAAGTA i mm10.chr15 I 943 C 0 s canFam3.chr10 46125536 12 - 69331447 -AAGTTTAAAGTA i canFam3.chr10 I 5 C 0 s dasNov3.JH570235 108430 13 + 1056298 ACAATTTAAATTA i dasNov3.JH570235 C 0 I 338 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e otoGar3.GL873526 36317341 0 - 42659167 C e micMur3.chr7 5746342 825 + 108171978 I a score=755276.000000 s hg38.chr22_GL383582v2_alt 114323 74 + 162811 AATTTAAGAAAGATGTGAGTCTGTTAGATGGGGGAAGTA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT s panTro5.chr22 28894274 74 + 37823149 AATTTAAGAAAGATGTGAGTCTGTTAGATGGGGGAAGTA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168845 74 + 50109623 AATTTAAGAAAGATGTGAGTCTGTTAGATGGGGGAAGTA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191670 74 + 4464012 AATTTAAGAAAGATGTGAGTCTTTTAGATGGGGGAAGTA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687424 74 - 115148730 AATTTAAGAAAGATGTGAGTCTGTTAGATGGGGGAAGTA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84303288 74 + 92844088 AATTTAAGAAAGATGTGAGTCTGTTAGATGTGGGAAATA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649650 74 - 96509753 AATTTAAGAAAGATGTGAGTCTGTTAGATGTGGGAAATA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7146565 74 - 13098629 AATTTAAGAAAGATGTGAGTCTGTTAGATGTGGGAAATA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4106412 74 - 4483953 AATTTAAGAAAGATGTGAGTCTGTTAAATGTGGGAAATA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736763 74 + 33263144 AATTTAAGAAAGATGTGAGTCTGTTAGATGTGAGAAATA--AATAATTATACATTATTTAAACTTGTATTAAAAAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017729 74 - 14338769 AATTTAAGAAAGATGTGAGTCTGTTAAATGTGGGAAATA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955674 74 + 1946073 AATTTAAGAAAGGTGTGAGTCTGTTAGATGTGGGAAATA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982852 76 - 2117846 aatttaagaaagatgtgagtctgttagatgggggaagtattaataattatctgttatttaaaattgtattaaaaat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8893943 76 - 16357246 AATTTAAGAAAGATGTGAGTCTGTTAGCTGGGAGAAGTATTATTAATTATCTGTTATTTAAACTTGTATCAAAAAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379681 75 - 1807191 AATTTAAGAAAGATATGAGTCTGTTAGATGGGGGATGTATTAATAATTATCTGTTATTTAAACTTATATT-AAAAT i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5109966 73 - 6317780 aa-ttaaggaggatgttggcttgttagataggggaaaca--agtaattatacattatttaaacttgtattaaaaat i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82845873 71 + 104043685 AATTAAACAAAATTCTGA-TCGGTTAGACA--GAATGTG--CTAAATTATCCATTACTTGAACCTGTGTTAAGAAT i mm10.chr15 C 0 I 2222 s canFam3.chr10 46125548 44 - 69331447 AA---------------------TTAGAGATGGGGGACA--GAT---------CTATTTAAACCTGTATTAAAAAT i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e dasNov3.JH570235 108443 338 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e micMur3.chr7 5746342 825 + 108171978 I a score=22800.000000 s hg38.chr22_GL383582v2_alt 114397 2 + 162811 AA s panTro5.chr22 28894348 2 + 37823149 AA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168919 2 + 50109623 AA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191744 2 + 4464012 AA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687498 2 - 115148730 AG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84303362 2 + 92844088 AA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649724 2 - 96509753 AA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7146639 2 - 13098629 AA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4106486 2 - 4483953 AA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736837 2 + 33263144 AA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017803 2 - 14338769 AA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955748 2 + 1946073 AA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982928 2 - 2117846 aa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8894019 2 - 16357246 AA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379756 2 - 1807191 AA i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5110039 2 - 6317780 aa i proCoq1.NW_012136747v1 C 0 I 522 s canFam3.chr10 46125592 2 - 69331447 AA i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e mm10.chr15 82845944 2222 + 104043685 I e dasNov3.JH570235 108443 338 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e micMur3.chr7 5746342 825 + 108171978 I a score=1074773.000000 s hg38.chr22_GL383582v2_alt 114399 128 + 162811 ----------GCCCCTAAACTggccaggtgcagtggctcacacctataatcccag----tactttgggaggccgaggagggtggattccttaaggtcaggagttcaaggccagcttggccaacatcctcaaatccc--------gtctct s panTro5.chr22 28894350 128 + 37823149 ----------GCCCCTAAACTggccaggtgcagtggctcacacctataatcccag----tactttgggaggccgaggagggtggattcctcaaggtcaggagttcaaggccagcttggccaacatcctcaaatccc--------gtctct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41168921 128 + 50109623 ----------GCCCCTAAACTggccaggtgcagtggctcacacctataatcccag----tactttgggaggccgaggagggtggattcctcaaggtcaggagttcaaggccagcttggccaacatcctcaaatccc--------gtctct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191746 128 + 4464012 ----------GCCCCTAAACTggccaggtgccgtggctcacacctataatcccag----tactttgggaggccgaggagggtggattccttaaggtcaggagttcaaggccagcttggccaacatcgtcaaatccc--------gtctct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687500 128 - 115148730 ----------GCCCCTAAATTggccaggtgcagtggctcacacctgtaatcccag----tactttgggaggccaaggagggtggattccttaaggtcaggagttcgaggccagcttggccaacatcgtcaaatccc--------aactct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84303364 128 + 92844088 ----------ACCCCTAAATCggccaggtgcggtggctcacacctgtaatcccag----tactttgggaggccgagcagggtggattccttaaggtcaggagttcgaggccagagtggtcaacatcgtcaaatccc--------gtctct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649726 128 - 96509753 ----------ACCCCTAAATCggccaggtgcggtggctcacacctgtaatcccag----tactttgggaggccgaggagggtggattccttaaggtcaggagttcgaggccagagtggtcaacatcgtcaaatccc--------gtctct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7146641 128 - 13098629 ----------ACCCCTAAATCggccaggtgcggtggctcacacctgtaatcccag----tactttgggaggccgaggagggtggattccttaaggtcaggagttcgaggccagagtggtcaacatcgtcaaatccc--------atctct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4106488 128 - 4483953 ----------ACCCCTAAATCggccaggtgcggtgactcacacctgtaatcccag----tactttgggaggccgaggagggtggattctttaaggtcaggagttcgaggccagagtggtcaacatcgtcaaatccc--------gtctct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736839 128 + 33263144 ----------ACCCCTAAATCggccaggtgcggtagctcacacctgtaatcccag----tactttgggaggccgaggagggtggattcctcaaggtcaggagttcgaggccagagtggttaacatcgtcaaatccc--------gtctct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017805 128 - 14338769 ----------ACCCCTAAATCggccaggtgcggtgactcacacctgtaatcccag----tactttgggaggccgaggagggtggattccttaaggtcaggagttcgaggccagagtggtcaacatcgtcaaatccc--------gtctct i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955750 128 + 1946073 ----------ACCCCTAAATCggccaggtgcggtggctcacacctgtaatcccag----tactttgggaggccaaggagggtggattccttaaggtcaggagttcgaggccagcctggtcaacatcgtcaaatccc--------gtctct i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1982930 127 - 2117846 ----------a-ccctacattggccaggcatggtggctcatgcctgtaatcccag----cactttgggaggctaaggagggtggattccttaaggtcaggagttcgaggccagattggccaaaaaggtcaaacctc--------atttct i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8894021 127 - 16357246 ----------A-CCCTACATTggccaggcatggtggctcacgcctgtaatcccag----cactttgggaggctgaggagggtggcttccttaaggtcaggagttcgaggccagattggccaacaaggtcaaacctc--------atttct i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379758 127 - 1807191 ----------A-CCCTACATTggccaggcatggtggctcatgcctgtaatcccag----cactctgggaggctgaggagggtggattccttaaggtcaggagttcgaggccagattggccaacaaggtcaaacctc--------atttct i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46125594 144 - 69331447 GCTTTTAggggcacctgggt-ggctaagtcagttaaccatctgccttcagctcaggtcatgatcttggggtcctgggactgag-----ccccacatcaggctctccaggggagtctgcttttccttctcaactctccttctgcagtctct i canFam3.chr10 C 0 I 262 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e mm10.chr15 82845944 2222 + 104043685 I e dasNov3.JH570235 108443 338 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5110041 522 - 6317780 I e micMur3.chr7 5746342 825 + 108171978 I a score=1572653.000000 s hg38.chr22_GL383582v2_alt 114527 188 + 162811 actaaaaatacaaaaattagctgggtgtggtggcacgcacctgtaattccagctactggggaggctgagacaggagaatcacttgaatacaggaggcggaggttgccgtgagccgagatcatgccactgcactccagcctggacaacagagtgagaccctgtctc-aaaaaa---------tc-aaggaaaaaaaa------------CCC s panTro5.chr22 28894478 189 + 37823149 actaaaaatacaaaaattagctgggtgtggtggcacgcacctgtaatcccagctactggggaggctgagacaggagaatcacttgaatacaggaggcggaggttgcagtgagccgagatcatgccactgcactccagcctggacaacagagtgagaccctgtctc-aaaaaa---------tc-aaggaaaaaaaa-----------aCCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169049 188 + 50109623 actaaaaatacaaaaattagctgggtgtggtggcacgcacctgtaatcccagctactggggaggctgagacaggagaatcacttgaatacaggaggcggagggtgcagtgagccgagatcatgccactgcactccagcctggacaacagagtgagaccctgtctc-aaaaaa---------tc-aaggaaaaaaaa------------CCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3191874 191 + 4464012 actaaaaatacaaaaattagctgggtgtggtggcacgcacctgtaatcccagctactagggaggctgagacaggagaatcacttgaatacaggaggcggaggttgcagtgagtcgagatcatgccactgcactccagcctggacaacagagtgaaaccctgtctcaaaaaaa---------tc-aagggaaaaaaa----------aaCCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687628 200 - 115148730 actaaaaatacgaaaattagctgggtgtggtggcacgcatctgtaatcccagctactggggaggctgagacaggagaatcacttgaatacaggaggtggaggttgcagtgagccgagatcatgccactgcactccagcctggacgacagagtgagaccctgtctc-aaaaaa---------cc-aagaaaaaaaaaaacagaacaaaaCCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84303492 196 + 92844088 actaaaaatacaaaaattagctgggtgtggtggcacacacctgtaatctcagctactggggaggctgaggcaggagaatcacttgaatacgggaggcagaggttacagtgagccaagatcacgccactgcactccagcctggatgacagagtgagaccctgtctc-ataaaataaat----tt-aagaaaaacaaa---------aaaCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87649854 196 - 96509753 actaaaaatacaaaaattagctgggtgtggtggcacacacctgtaatctcagctactggggaggctgaggcaggagaatcacttgaatacgggaggcagaggttacagtgagccaagatcacgccactgcactccagcctggatgacagagtgagaccctgtctc-ataaaataaat----tt-aagaaaaacaaa---------aaaCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7146769 196 - 13098629 actaaaaatacaaaaattagctgggtgtggtggcacacacctgtaatctcagctactggggaggctgaggcaggagaatcacttgaatacgggaggcagaggttacagtgagccaagatcacgccactgcactccagcctggatgacagagtgagaccctgtctc-ataaaataaat----tt-aagaaaaacaaa---------aaaCCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4106616 196 - 4483953 actaaaaatacaaaaattagctgggtgtggtggcacacacctgtaatctcagctactggggaggctgaggcaggagaatcacttgaatacgggacgcagaggttacagtgagccaagatcacgccactgcactccagcctggatgacagagtgagaccctgtctc-aaaaaataaat----tt-aagaaaaacaaa---------aaaCCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24736967 196 + 33263144 actaaaaatacaaaaattagctgggtgtggtggcacacacctgtaatctcagctactggggaggccaaggcaggagaatcacttgaatacgggaggcagaggttacagtgagccaagatcacaccactgcactccagcctggatgacagagtgagaccctgtctc-aaaaaataaat----tt-aagaaaaacaaa---------aaaCCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14017933 196 - 14338769 actaaaaatacaaaaattagctgggtgtggtggcacacacctgtaatctcagctactggggaggctgaggcaggagaatcacttgaatacgggacgcagaggttacagtgagccaagatcacgccactgcactccagcctggatgacagagtgagaccctgtctc-aaaaaataaat----tt-aagaaaaacaaa---------aaaCCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 955878 196 + 1946073 actaaaaatacaaaaattagctgggtgtggtggcacacacctgtaatcccagctactggggaggctgaggcaggagaatcacttgaatacgggaggcagaggttacagtgagtcaagatcatgccactgcactccagcctggatgacagagtgagaccctgtctc-aaaaaataaat----tt-aagaaaaacaaa---------aaaCCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1983057 197 - 2117846 actaaaaatacaaaaattagctgggcgtggtggcacacacctgtaatcccagctattcgggaggctgaggtgggagaatcgcttgaacacaggaggtagaagtcgtagtgagtcgagatcacaccactgtactccagactggatgacagagttagaccctgtctc-aaaaattaaataaaatt-taaaaaactaaa------------ccc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8894148 198 - 16357246 actaaaaacacaaaaattagctgggcatggtggcacacacctgtaatcccagctattcaggaggctgaggtgggagaatcgcttgaacacagaaggcggaagttgtagtgagccgagatcacaccactgtactccagactggatgacagagttagaccctgtctc-aaaaattaagtaaaattaaaaaaaaCCAAA------------CCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1379885 197 - 1807191 actaaaaatacaaaaattagctgggcatggtggcacacacctgtaatcccagctattcgggaggctgaggtgggagaatcgcttgaacacaggaggtggaagttgtagtgagacaaaatcacaccactgtactccagacaggatgacagagttagaccctgtctc-aaaaGTTAAATAAAATT-TAAAAAACCAAA------------CCC i cebCap1.NW_016107750v1 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e mm10.chr15 82845944 2222 + 104043685 I e dasNov3.JH570235 108443 338 + 1056298 I e canFam3.chr10 46125738 262 - 69331447 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5110041 522 - 6317780 I e micMur3.chr7 5746342 825 + 108171978 I a score=121870.000000 s hg38.chr22_GL383582v2_alt 114715 14 + 162811 TAAATATAATCTTT s panTro5.chr22 28894667 14 + 37823149 TAAATATAATCTTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169237 14 + 50109623 TAAATATAATCTTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192065 14 + 4464012 TAAATATAATATTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687828 14 - 115148730 TAAATATAATCTTT i nomLeu3.chr7b C 0 I 1 s rheMac8.chr10 84303688 8 + 92844088 ------TAATCTTT i rheMac8.chr10 C 0 I 330 s macFas5.chr10 87650050 8 - 96509753 ------TAATCTTT i macFas5.chr10 C 0 I 333 s macNem1.NW_012012688v1 7146965 14 - 13098629 TAAATATAATCTTT i macNem1.NW_012012688v1 C 0 I 307 s cerAty1.NW_011999588v1 4106812 14 - 4483953 TAAATATAATCTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24737163 14 + 33263144 TAAATATAATCTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14018129 14 - 14338769 TAAATATAATCTTT i manLeu1.NW_012102031v1 C 0 I 342 s colAng1.NW_012115588v1 956074 14 + 1946073 TAAATATAATCTTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1983254 14 - 2117846 taaatgtaatcttt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8894346 14 - 16357246 TAAATATAATCTTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380082 14 - 1807191 TAAATATAATCTTT i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46126000 14 - 69331447 taaataaaatctta i canFam3.chr10 I 262 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e mm10.chr15 82845944 2222 + 104043685 I e dasNov3.JH570235 108443 338 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5110041 522 - 6317780 I e micMur3.chr7 5746342 825 + 108171978 I a score=24495.000000 s hg38.chr22_GL383582v2_alt 114729 3 + 162811 -AAT s panTro5.chr22 28894681 3 + 37823149 -AAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169251 3 + 50109623 -AAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192079 3 + 4464012 -AAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687843 3 - 115148730 -AAT i nomLeu3.chr7b I 1 C 0 s rheMac8.chr10 84304026 3 + 92844088 -aaT i rheMac8.chr10 I 330 C 0 s macFas5.chr10 87650391 3 - 96509753 -aAT i macFas5.chr10 I 333 C 0 s macNem1.NW_012012688v1 7147286 3 - 13098629 -aaT i macNem1.NW_012012688v1 I 307 C 0 s cerAty1.NW_011999588v1 4106826 3 - 4483953 -AAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24737177 3 + 33263144 -AAT i chlSab2.chr19 C 0 I 350 s manLeu1.NW_012102031v1 14018485 3 - 14338769 -aat i manLeu1.NW_012102031v1 I 342 C 0 s colAng1.NW_012115588v1 956088 3 + 1946073 -AAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1983268 3 - 2117846 -aat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8894360 3 - 16357246 -AAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380096 3 - 1807191 -AAT i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46126014 3 - 69331447 aaa- i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e mm10.chr15 82845944 2222 + 104043685 I e dasNov3.JH570235 108443 338 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5110041 522 - 6317780 I e micMur3.chr7 5746342 825 + 108171978 I a score=11867.000000 s hg38.chr22_GL383582v2_alt 114732 2 + 162811 -AT s panTro5.chr22 28894684 2 + 37823149 -AT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169254 2 + 50109623 -AT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192082 2 + 4464012 -AT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687846 2 - 115148730 -AT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304029 2 + 92844088 -AT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87650394 2 - 96509753 -AT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7147289 2 - 13098629 -AT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4106829 2 - 4483953 -AT i cerAty1.NW_011999588v1 C 0 I 331 s chlSab2.chr19 24737530 2 + 33263144 -AT i chlSab2.chr19 I 350 C 0 s manLeu1.NW_012102031v1 14018488 2 - 14338769 -aT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 956091 2 + 1946073 -AT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1983271 2 - 2117846 -at i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8894363 2 - 16357246 -AT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380099 2 - 1807191 -AC i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46126017 2 - 69331447 aa- i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e mm10.chr15 82845944 2222 + 104043685 I e dasNov3.JH570235 108443 338 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5110041 522 - 6317780 I e micMur3.chr7 5746342 825 + 108171978 I a score=116857.000000 s hg38.chr22_GL383582v2_alt 114734 16 + 162811 -ATTGATTCAGAAATTT-- s panTro5.chr22 28894686 16 + 37823149 -ATTGATTCAGAAATTT-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169256 16 + 50109623 -ATTGATTCAGAAATTT-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192084 16 + 4464012 -ATTGATTCAGAAATTT-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687848 16 - 115148730 -ACTGATTCAGAAATTT-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304031 16 + 92844088 -ATTGATTCAGAAATTT-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87650396 16 - 96509753 -ATTGATTCAGAAATTT-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7147291 16 - 13098629 -ATTGATTCAGAAATTT-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107162 16 - 4483953 -ATTGATTCAGAAATTT-- i cerAty1.NW_011999588v1 I 331 C 0 s chlSab2.chr19 24737532 16 + 33263144 -ATTGATTCAGAAATTT-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14018490 16 - 14338769 -ATTGATTCAGAAATTT-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 956093 16 + 1946073 -ATTGATTCAGAAATTT-- i colAng1.NW_012115588v1 C 0 I 646 s calJac3.chrUn_GL286373 1983273 11 - 2117846 -actgattcaaa------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8894365 16 - 16357246 -ACTGATTTAAAATTTT-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380101 16 - 1807191 -ACTGATTTAAAATTTT-- i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46126019 19 - 69331447 aataaataaataaaatctt i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e mm10.chr15 82845944 2222 + 104043685 I e dasNov3.JH570235 108443 338 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5110041 522 - 6317780 I e micMur3.chr7 5746342 825 + 108171978 I a score=999635.000000 s hg38.chr22_GL383582v2_alt 114750 119 + 162811 ----AAAGAAAATTggccaggcacagtggctcagacctgtaatcccagcactttgggtggctgaggcaggtggatcacttgagatcaggagtttgagatcag---cctggccaacat----ggtgaaacc s panTro5.chr22 28894702 119 + 37823149 ----AAAGAAAATTggccaggcacagtggctcaggcccgtaatcccagcactttgggaggctgaggcaggtggatcacttgagatcaggagtttgagatcag---cctggccaacat----ggtgaaacc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169272 119 + 50109623 ----AAAGAAAATTggccaggcacagtggctcaggcctgtaatcccagcactttgggaggctgaggcaggtggatcacttgagatcaggagtttgagatcag---cctggccaacat----ggtgaaacc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192100 119 + 4464012 ----AAAGAAAATTggccaggcacagtggctcaggcctgtaatcccagcactttgggaggctgaggcaggtggatcacttgagatcaggagtttgagatcag---cctggccaacat----ggtgaaacc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687864 118 - 115148730 ----AAAG-AAATTggccaggcacgatggctcacgcctgtaatcccagcactttgggaggctgaagcaggtggatcacttgagatcaggagtttgagatcag---cctgcccaacat----ggtgaaacc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304047 119 + 92844088 ----AAAGAAAATTggccaggcacggcggctcacgcctgtaatcccaacactttgggaggctgaggcaggcggatcacttgagatcaggagttcgagatcag---cctgcccaacat----ggtgaaacc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87650412 119 - 96509753 ----AAAGAAAATTggccaggcacggcggctcacgcctgtaatcccaacactttgggaggctgaggcaggcggatcacttgagatcaggtgttcgagatcag---cctgcccaacat----ggtgaaacc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7147307 119 - 13098629 ----AAAGAAAATTggccaggcacggcggctcacgcctgtaatcccaacactttgggaggctgaggcaggcggatcacttgagatcaggagttcgagatcag---cctgcccaacat----ggtgaaacc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107178 119 - 4483953 ----AAAGAAAATTggccaggcacggcggctcacgcctgtaatcccaacactttgggaggctgaggcaagcggatcacttgagatcaggagttcaagatcag---cctgcccaacat----ggtgaaacc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24737548 119 + 33263144 ----AAAGAAAATTggccaggcacggcggctcacgcctgtaatcccaacactttgggaggctgaggcaggcggatcacttgagatcaggagttggagatcag---tctgaccaacat----ggtgaaacc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14018506 119 - 14338769 ----AAAGAAAATTggccaggcacggtggctcacgcctgtaatcccaacactttgggaggctgaggcaggcggatcacttgagatcaggagttcgagatcag---cctgcccaacat----ggtgaaacc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 956755 119 + 1946073 ----AAAGAAAATTGCccagacacggcggctcacgcctgtaatcccaacactttgggaggctgaggcaggcggatcacttgagatcaggagttcgagatcag---cctgcccaacat----ggtgaaacc i colAng1.NW_012115588v1 I 646 C 0 s calJac3.chrUn_GL286373 1983284 118 - 2117846 -----aagacaatcggctgggcatcgtggctcacccctgtaatcctagcactttgggaggctcaggccggtgggtcacatgagatcaggagtttgaggccag---cctggccaatat----ggtgaaacc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8894381 119 - 16357246 ----TAAGAAAATCggccgggcatcgtggctcacccctgtaatcccagcacttcgggagactgaggctagtggatcacatgagatcaggagttcgagaccag---cctagccaatat----ggtgaaacc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380117 119 - 1807191 ----TAAGAAAATAggccgggcatcatggttcacccctgtaatccctgcactttgggagactgaggctagtgggtcacatgagatcaggagttcgagaccag---cctggccaatat----ggtgaaacc i cebCap1.NW_016107750v1 C 0 I 221 s canFam3.chr10 46126038 95 - 69331447 aaaaaaaaaaaatcaattcctgatctcagctcgggtct-tgatctcag----------------------------------ggtcgtgagttcaagccccatgctgtgctccacactgggtgtggaacc i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e mm10.chr15 82845944 2222 + 104043685 I e dasNov3.JH570235 108443 338 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5110041 522 - 6317780 I e micMur3.chr7 5746342 825 + 108171978 I a score=680735.000000 s hg38.chr22_GL383582v2_alt 114869 106 + 162811 ctgtctctattaaaaatacaaaaattagccaggtgtggtggtgcatgactgcagtcccagttacttgggaggctgaggcaggagagt------cacttgaacccacgaggag s panTro5.chr22 28894821 106 + 37823149 ctgtctctactaaaaatacaaaaattagccaggtgtggtggtgcatgactgcagtcccagttactcgggaggctgaggcaggagagt------cacttgaacccacgaggag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169391 106 + 50109623 ctgtctctactaaaaatacaaaaattagccaggtgcggtggtgcatgactgcagtcccagttactcgggaggctgaggcaggagagt------cacttgaacccacgaggag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192219 106 + 4464012 ctgtctctactaaaaatacaaaaattagccaggtgtggtggtgcatgactgcagtcccagttacttgggaggctgaggcagaagagt------cacttgaacccacgaggag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106687982 106 - 115148730 ccgtctctactaaaaatacaaaaattagccaggtgtggtggtacatgcctacagtcccagttacttgggaggctgaggcaggagagt------cacttgaacccacgaggag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304166 106 + 92844088 ccatctctactaaaaatacaaaaattagccagctatggtggtgcatgcctgcagtcccagttacttgggagactgaggcaggagagt------cacttgaactcacgaggag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87650531 106 - 96509753 ccatctctactaaaaatacaaaaattggccagctatggtggtgcatgcctgcagtcccagttacttgggagactgaggcaggagagt------cacttgaactcacgaggag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7147426 106 - 13098629 ccatctctactaaaaatacaaaaattagccagctatggtggtgcatgcctgcagtcccagttacttgggagactgaggcaggagagt------cacttgaactcacgaggag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107297 106 - 4483953 ccatctctactaaaaatacaaaaattagccagctatggtggtgcatgcctgcagtcccagttacttgggagactgaggcaggagagt------cacttgaactcacgaggag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24737667 106 + 33263144 ctatctctactaaaaatacaaaaattagccagctgtggtggtgcatgcctgcagtcccagttacttgggagactgaggcaggagagt------cacttgaactcacgaggag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14018625 106 - 14338769 ccatctctactaaaaatacaaaaattagccagctatggtggtgcatgcctgcagtcccagttacttgggagactgaggcaggagagt------cacttgaactcacgaggag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 956874 106 + 1946073 ccgtctctactaaaaatacaaaaattagccagctgtggtggtacatgcctgcagtcccagttactagggagactgaggcaggagagt------cacttgaactcacgaggag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1983402 99 - 2117846 tcttctctactaaaaatacacaaattagccgggtgtggtggtgcatgcctgcagtcccagtta----ggaggctgaggcaggaaaat------cacttaaacccaca---ag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8894500 35 - 16357246 tcttctctatt-----------------------------------------------------------------------agaat------catttgaacccagaaggag i saiBol1.JH378157 C 0 C 0 s canFam3.chr10 46126133 73 - 69331447 -------taatagaaa-ataaaaATGAAC----TTTAGGGGCAcctggct--------------------ggctcagtcagaacagcatgtggctcttgatctca------- i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e mm10.chr15 82845944 2222 + 104043685 I e dasNov3.JH570235 108443 338 + 1056298 I e otoGar3.GL873526 36317341 0 - 42659167 C e proCoq1.NW_012136747v1 5110041 522 - 6317780 I e micMur3.chr7 5746342 825 + 108171978 I e cebCap1.NW_016107750v1 1380236 221 - 1807191 I a score=577142.000000 s hg38.chr22_GL383582v2_alt 114975 79 + 162811 gtggttgcagtgagccaagattgtgccactgcactccag-cc-tggcaacagag----------caagactcATCTCaaaataaaaa----taaa s panTro5.chr22 28894927 79 + 37823149 gtggctgcagtgagccaagattgtgccactgcactccag-cc-tggcaacagag----------caagactcATCTCaaaataaaaa----taaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169497 79 + 50109623 gtggctgcagtgagccaagattgtgccactgcactccag-cc-tggcaacagag----------caagactcATCTCaaaataaaaa----taaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192325 79 + 4464012 gtggttgcagtgagccaagattgtgccactgcactccag-cc-tggcaacagag----------caagactcATCTCaaaataaaaa----taaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688088 79 - 115148730 gtggttgcagtgagccaagattgcgccactgcactccag-cc-tggcaacagag----------caagactcATCTCaaaataaaaa----taaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304272 79 + 92844088 gtggctacagtgagctgagatcgcaccactgcactccag-cc-tggcaacagag----------caagactcATCTCaaaataaaaa----taaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87650637 79 - 96509753 gtggctacagtgagctgagatcgcaccactgcactccag-cc-tggcaacagag----------caagactcATCTCaaaataaaaa----taaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7147532 79 - 13098629 gtggctacagtgagctgagatcgcaccactgcactccag-cc-tggcaatagag----------caagactcATCTCaaaataaaaa----taaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107403 79 - 4483953 gtggctacagtgagctgagatcgcaccactgcactccag-cc-tggcaacagag----------caagactcATCTCaaaataaaaa----taaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24737773 73 + 33263144 gtggctacagtgagctgagatcgcaccattgcactccag-cc-tggcaacagag----------caagactcatctc------aaaa----taaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14018731 76 - 14338769 gtggctacagtgagctgagatcgcaccactgcactccag-cc-tgg---cagag----------caagactcATCTCaaaataaaaa----taaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 956980 79 + 1946073 gtggctacagtgagctgagatcgcaccactgcactccag-cc-tggcaacagag----------caagactcATCTCaaaataaaaa----taaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1983501 80 - 2117846 gaggctatagtgagctgagattgtgtcactgtactctagtct-tggcaagagag----------caagacctgtcactaaataaaaa----caaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8894535 79 - 16357246 gaggctatagtgagctgagattgtgccactgcactccag-cc-tggcaagagag----------caagactcgtcactaaataaaaa----caaa i saiBol1.JH378157 C 0 C 0 s otoGar3.GL873526 36317341 60 - 42659167 gaggctgcagtgggctatgatgacgccactgtactctct-ccacaatgacagag----------caagtct------------------------ i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46126206 72 - 69331447 -----------gggtcatgatt------ttgagccccac-gt-tgggcacAGAGATCAAATAAATAAAACTTG----AAAAAAAAAAGCTTTAAA i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e mm10.chr15 82845944 2222 + 104043685 I e dasNov3.JH570235 108443 338 + 1056298 I e proCoq1.NW_012136747v1 5110041 522 - 6317780 I e micMur3.chr7 5746342 825 + 108171978 I e cebCap1.NW_016107750v1 1380236 221 - 1807191 I a score=1082420.000000 s hg38.chr22_GL383582v2_alt 115054 162 + 162811 aatag----------------aaaataaaaatTAACCTAAAACCAG----TT-AACATATACTGTCAGGT-------------------AAAAAAAAAAGATTAAAAGTTTCCCAAGGGGGGTTGGAAAA-----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAACAAGCAAAG----ACTCCCCGACTCCCCCACTAGTAGGGCTATC---------- s panTro5.chr22 28895006 152 + 37823149 aatag----------------aaaataaaaatTAACCTAAAACCAG----TT-AACATATACTCTCAGGT-------------------AAAAAAAA--GATTAAAAGTTTCCCAAGAGGGGTTGGAAAA-----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAACAAGCAAAG----ACTCCCC--------CACTAGTAGGGCTATG---------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169576 151 + 50109623 aatag----------------aaaataaaaatTAACCTAAAACCAG----TT-AACATATACTCTCAGGT-------------------AAAAAAA---GATTAAAAGTTTCCCAAGAGGGGTTGGAAAA-----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAACAAGCAAAG----ACTCCCC--------CACTAGTAGGGCTATG---------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192404 152 + 4464012 aatag----------------aaaataaaaatTAACCTAAAACCAG----TT-AACATATACTGTCAGGT-------------------AAAAAAAA--GATTAAAAATTTCCCAAGGGGGGTTGGAAAA-----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAACAAGCAAAG----ACTCCCC--------CACTAGTAGGGCTATG---------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688167 152 - 115148730 aatag----------------aaaataaaaatTAACCTAAAACCAG----TT-AACATATATTGTCAGGT-------------------AAAAAAAA--GATTAAAAATTTCCCAAAGGAGGTTGGAAAA-----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAACAAGCAAAG----ACTCCCC--------CACTAGTAGGACTATG---------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304351 154 + 92844088 aatag----------------aaaataaaaatTAACCTAAAACGAG----TT-AACATACACTGTCAGGT-----------------AAAAAAAAAA--GATTAAAAATTTCCCAAGGGAGGTTGGAAAA-----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAATAAGCAAAG----CCTCTCC--------CACTAGTAGGGCTATG---------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87650716 154 - 96509753 aatag----------------aaaataaaaatTAACCTAAAACGAG----TT-AACATACACTGTCAGGT-----------------AAAAAAAAAA--GATTAAAAATTTCCCAAGGGAGGTTGGAAAA-----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAATAAGCAAAG----CCTCTCC--------CACTAGTAGGGCTATG---------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7147611 156 - 13098629 aatag----------------aaaataaaaatTAACCTAAAACGAG----TT-AACATACACTGTCAGGT---------------AAAAAAAAAAAA--GATTAAAAATTTCCCAAGGGAGGTTAGAAAA-----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAATAAGCAAAG----CCTCTCC--------CACTAGTAGGGCTATG---------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107482 152 - 4483953 aatag----------------aaaataaaaatTAACCTAAAACGAG----TT-AACATACACTGTCAGGT-------------------AAAAAAAA--GATTAAAAATTTCCCAAGGGAGGTTGGAAAA-----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGAAATAAGCAAAG----CCTCTCC--------CACTAGTAGGGCTATG---------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24737846 152 + 33263144 aatag----------------aaaataaaaaTTAACCTAAAACGAG----TT-AACATACACTGTCAGGT-------------------AAAAAAAA--GATTAAAAATTTCCCAAGGGAGGTTGGAAAA-----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAATAAGCAAAG----CCTCTCC--------CACTAGTAGGGCTATG---------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14018807 153 - 14338769 aatag----------------aaaataaaaatTAACCTAAAACGAG----TT-AACATACACTGTCAGGT------------------AAAAAAAAA--GATCAAAAATTTCCCAAGGGAGGTTGGAAAA-----ATTGGGGAGGGGCACCTTC--------------------TATGAGAGGGGAATAACCAAAG----CCTCTCT--------CACTAGTAGGGCTATG---------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957059 158 + 1946073 aatag----------------aaaataaaaatTAACCTAAAACGAG----TT-AACATACACTGTCAGGT-------------AAAAAAAAAAAAAA--GATTAAAAATTTCCCAAGGGGGGTTGGAAAA-----ATTTGGGAGGGGTACCTTC--------------------TATGAGAGGGGAATAAGCAAAG----CCTCTCC--------CACTAGTAGGGCTATG---------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1983581 161 - 2117846 aagaa----------------aaaagaaaaattaacctaaaaccagttcttt-aacatacactgtcagat----------------aaaacaaaaaa--gattaagaattttccaaggg-gcttggaaag-atatatttgagaggggCACCTTC--------------------TATGAGAGGGGAACAAGCAAAG----ACTCCCC--------TAGTAGTAGGGT-GTG---------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8894614 177 - 16357246 aagaa----------------aAAAGAAAAATTAACCTAAAACCAGTTCTTT-AACAGAAACTGTCAGATTTaaaaaaaaaaaaaaaaaaaaaaaaG--GATTAACGATTTTCCAAGGG-GGTTGGAAAG-ATATATTTGGGAGAAGCACCTTC--------------------TATGAGAGGGGAACAGGCAAAG----ACTCCCC--------TAGTCGTAGGGC-GTG---------- i saiBol1.JH378157 C 0 C 0 s otoGar3.GL873526 36317401 130 - 42659167 --------------------------------------------------ct-gcc-------------t-------------------caaaaaaa--GACTACAACTTCCC--AAGGAGGTTGGCAAGAATGTAATTGGGAGGGGCACCTTC----CTGTAGGTAGTGGA--TAGGGAAAAGCAACAGGCAAAGGCCAGCTCTTC--------CATCAGTAGGACGGTG---------- i otoGar3.GL873526 C 0 I 9 s canFam3.chr10 46126278 165 - 69331447 CATAATCTTTAATATACTGATCAAAAGAGAACTGACCCAAATCCAG----TT-AACATATAC--------------------------------AAA------------TTCCCAAGGAGGCTGTTAAGA-----ATCTGGAAGGGGAGCGGTCAGCCCAGGTGGTGGTAGAGGGAAGGGAAGGGAACAAAACAGG-CCAGCTCTCC--------TGAGAGCAGTGTA------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 108781 181 + 1056298 aatca----------------aaaaaaacaa--accctaaaactag----ttaaacttgtactgt-ggaa-------------------aaaataaa--gattaaaatttctcttatggggttagcaaga-atatatctgaaagaggtACCATCAGCCTAGGTGGGG-------GAGGGCAAGGGAACAGGCCCAGGCTAGCTCTTC--------CAGGGATAGGGCAAAGGAGGGACGCA i dasNov3.JH570235 I 338 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e mm10.chr15 82845944 2222 + 104043685 I e proCoq1.NW_012136747v1 5110041 522 - 6317780 I e micMur3.chr7 5746342 825 + 108171978 I e cebCap1.NW_016107750v1 1380236 221 - 1807191 I a score=57501.000000 s hg38.chr22_GL383582v2_alt 115216 5 + 162811 CAGCC s panTro5.chr22 28895158 5 + 37823149 CAGCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169727 5 + 50109623 CAGCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192556 5 + 4464012 CAGCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688319 5 - 115148730 CAGCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304505 5 + 92844088 CAGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87650870 5 - 96509753 CAGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7147767 5 - 13098629 CAGCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107634 5 - 4483953 CAGTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24737998 5 + 33263144 CAGCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14018960 5 - 14338769 CAGCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957217 5 + 1946073 CAGCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1983742 5 - 2117846 CAGCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8894791 5 - 16357246 CAGCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380457 5 - 1807191 CAGCC i cebCap1.NW_016107750v1 I 221 C 0 s otoGar3.GL873526 36317540 5 - 42659167 CAACC i otoGar3.GL873526 I 9 C 0 s canFam3.chr10 46126443 2 - 69331447 CA--- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 108962 5 + 1056298 CAGCC i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e mm10.chr15 82845944 2222 + 104043685 I e proCoq1.NW_012136747v1 5110041 522 - 6317780 I e micMur3.chr7 5746342 825 + 108171978 I a score=217887.000000 s hg38.chr22_GL383582v2_alt 115221 14 + 162811 TCAAGGGATCCATG s panTro5.chr22 28895163 14 + 37823149 TCAAGGGATCCATG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169732 14 + 50109623 TCAAGGGATCCATG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192561 14 + 4464012 TCAAGGGACCCATG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688324 14 - 115148730 TCAAGGGATCCATG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304510 14 + 92844088 TCAAGGGATCCATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87650875 14 - 96509753 TCAAGGGATCCATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7147772 14 - 13098629 TCAAGGGATCCATG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107639 14 - 4483953 TCAAGGGATCCATG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738003 14 + 33263144 TCAAGGGATCCATG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14018965 14 - 14338769 TCAAGGGATCCATG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957222 14 + 1946073 TCAAGGGATCCATG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1983747 14 - 2117846 TCAAGGGATCCATG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8894796 14 - 16357246 TCAAGGGATCCATG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380462 14 - 1807191 TCAAGGGATCCACG i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5747167 14 + 108171978 TCAAGGGATCCATG i micMur3.chr7 I 825 C 0 s proCoq1.NW_012136747v1 5110563 14 - 6317780 TCAAGGGATCCATG i proCoq1.NW_012136747v1 I 522 C 0 s otoGar3.GL873526 36317545 14 - 42659167 TCAAGGGATCCATG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46126445 13 - 69331447 -CTAGAGATCCCTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 108967 12 + 1056298 TCAAGAGATGCA-- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I e mm10.chr15 82845944 2222 + 104043685 I a score=1943132.000000 s hg38.chr22_GL383582v2_alt 115235 169 + 162811 GCCACCAGAT--CTACCTTCTGTCACATCCCTGCAC-------GCCTTGGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATATCCATACCCATTCAGAGGCAA--TTACCTCTGTAATATCATTCATGTCAGAGGTCATTGT-GAT----TCTCATACACAA-TTATACCAAGG s panTro5.chr22 28895177 169 + 37823149 GCCACCAGAT--CTACCTTCTGTCACATCCCTGCAC-------GCCTTGGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATATCCATACCCATTCAGAGGCAA--TTACCTCTGTAATATCATTCATGTCAGAGGTCATTGT-GAT----TCTCATACACAA-TTATACCAAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169746 169 + 50109623 GCCACCAGAT--CTACCTTCTGTCACATCCCTGCAC-------GCCTTGGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATATCCATACCCATTCAGAGGCAA--TTACCTCTGTAATATCATTCATGTCAGAGGTCATTGT-GAT----TCTCATACACAA-TTATACCAAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192575 169 + 4464012 GCCACCAGAT--CTACCTTCTGTCACATCCCTGCAC-------GCCTTGGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATATCCATACCCATTCAAAGGCAA--TTACCTCTGTAATATCATTCATGTCAGAGGTCATTGT-GAT----TCTCATACACAA-TTATACCAAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688338 169 - 115148730 GCCACCAGAT--CTACCTTCTGTCACATCCCTGCAC-------GCCTTGGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTG------ATATCCATACCCGTTCAGAGGCAA--TTACCTCTGTAATATCATTCATGTCAGAGGTCATTGT-GAT----TCTCATCCACAA-TTATACCAAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304524 169 + 92844088 GCCACCAGAT--CCACCTTCTGTCACATCCCTACAT-------GCCTTCGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATACCCATACCCGTTCAGAGGCAA--TTACCTCTGTAATATCATTCATGTCAGAGGTCATTCT-GAT----TCTCATCCACAA-TTATACCAAGG i rheMac8.chr10 C 0 I 4 s macFas5.chr10 87650889 169 - 96509753 GCCACCAGAT--CCACCTTCTGTCACATCCCTACAT-------GCCTTCGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATACCCATACCCGTTCAGAGGCAA--TTACCTCTGTAATATCATTCATGTCAGAGGTCATTCT-GAT----TCTCATCCACAA-TTATACCAAGG i macFas5.chr10 C 0 I 4 s macNem1.NW_012012688v1 7147786 169 - 13098629 GCCACCAGAT--CCACCTTCTGTCACATCCCTACAT-------GCCTTCGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATACCCATACCCGTTCAGAGGCAA--TTACCTCTGTAATATCATTCATGTCAGAGGTCATTCT-GAT----TCTCATCCACAA-TTATACCAAGG i macNem1.NW_012012688v1 C 0 I 4 s cerAty1.NW_011999588v1 4107653 169 - 4483953 GCCACCAGAT--CCACCTTCTGTCACATCCCTACAT-------GCCTTCGCATTCCTTAATGTCTCAAAGGTGATCTGTACATACCAAGTT------ATACCCATACCCGTTCAGAGGCAA--TTACCTCTGTAATATCATTCATGTCAGAGGTCATTCT-GAT----TCTCATCCACAA-TTATACCAAGG i cerAty1.NW_011999588v1 C 0 I 4 s chlSab2.chr19 24738017 123 + 33263144 GCCACCAGAT--CCACCTTCTGTCACATCCCTGCAT-------GCCTTCGCATTCCTTAACGTCTCAAAGGTGATT------------------------------------------------------TGTAATATCATTCATGTCAGAGGTCATTCT-GAT----TCTCATCCACAA-TTATACCAAGG i chlSab2.chr19 C 0 I 4 s manLeu1.NW_012102031v1 14018979 169 - 14338769 GCCACCAGAT--CCACCTTCTGTCACATCCCTACAT-------GCCTTCGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATACCCATACCCGTTCAGAGGCAA--TTACCTCTGTAATATCATTCATGTCAGAGGTCATTCT-GAT----TCTCATCCACAA-TTATACCAAGG i manLeu1.NW_012102031v1 C 0 I 4 s colAng1.NW_012115588v1 957236 160 + 1946073 G-----------CCACCTTCTGTCACATCCCTGCAT-------GCCTTCGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATACCCATACCCGTTCAGAGGCAA--TTACCTCTGTAATATCATTCATGTCAGAGGTCATTCT-GAT----TCTCATCCACAA-TTATACCAAGG i colAng1.NW_012115588v1 C 0 I 4 s calJac3.chrUn_GL286373 1983761 177 - 2117846 GCCACCAGATCCCCACCTTCTGCCACATCCCTGCAG-------GCCTTCGCATTCTTCAGTGTCTCAAAGGTGATTTGTAAATACCAAGTTATACCCATACCCATACCCATTTAGAGGCAA--TTTTCTCTGTAATATCATTCATGTCAGGGGTCATTGT-GAT----TCACATACACAA-TTATACCAAGG i calJac3.chrUn_GL286373 C 0 I 4 s saiBol1.JH378157 8894810 172 - 16357246 GCCACCAGATCCCCACCTTCTGCCACATCCCTGCAG-------GCCTTTGCATTCCTCAATGTCTCAAAGGTGATTTGTAAATACCAAGTT------ATACCCATACCCGTTTAGAGGCAA--TTATCTCTGTAATACCATTCATGTCAGGGGTCACTGT-GAT----TCACATACACAATTTATACCAAGG i saiBol1.JH378157 C 0 I 4 s cebCap1.NW_016107750v1 1380476 171 - 1807191 GCCACCAGATCCCCACCTTCTGCCACATCCCTGCAG-------GCGTTCCCATTCCTCAGTGTCTCAAAGGTGATTTGTAAATACCAAATT------ATACCCATACCCGTTTAGAGGCAA--TTATCTCTGTAATATCATTCATGTCAGGGGTCACTGT-GAT----TCACATACACAA-TTATACCAAGG i cebCap1.NW_016107750v1 C 0 I 4 s micMur3.chr7 5747181 168 + 108171978 GCCACCAGATCCTCATCTTCTGCCACAACCCTGCAA-------GTGTT------CCTCAATGTCTCAAATGTGACTTGTATATACCAAGTT------ATACCTATGCCTGATGAGAGGCAATTTTACCTCTGTAACATCAGTTATGTCAGAGGTCATTGTGGAT----TCACATACATGA-TTATTCCCAGG i micMur3.chr7 C 0 I 4 s proCoq1.NW_012136747v1 5110577 172 - 6317780 GCCACCAGATCCTCATCTTCTGCCACAACCCTGCAA-------GTCTTCTCATGCCTCAATGTCTCAAATGTGACTTGTGTATACCAAGTT------ATACCTATGCCTGTTGAGAGGCAA--TTACCTCTGTAACATCACTTACGTCAGAGGTCATTGTGGAT----TCACATACATGA-TTATACCCAGG i proCoq1.NW_012136747v1 C 0 I 4 s otoGar3.GL873526 36317559 154 - 42659167 GCCACCAGACCCTCA---TCTGCCACAACCCTGGAG-------ACCTTCTCAT---------TCTTAAATGTGACTTATAGATACCAAGTT------ATACCTCTGCATGTTGAGAGGCAA--TTACCTCTGTAACATCAGTGATGTCAGAGGTCATTGTGGAT----TCACA------A-ATATACTCAGG i otoGar3.GL873526 C 0 I 4 s mm10.chr15 82848166 161 + 104043685 GCAACCAGATCCTCATCTTCGACCGTGACTC--CAA-------ATCCTCACATTCCTAAGCGTCTCAAGCACACTATATATAAATCAATTG------CAATGTACGCATCTTGAGAAGCAA--AAATCTCTACAACA-CTTTCATGTCA--AGTCATTGCAGAA----TCATGT-------TTTTACCAATG i mm10.chr15 I 2222 C 0 s canFam3.chr10 46126458 138 - 69331447 ---------------TCTGCCACCACAACCCTGAACCTGAAAGGCCGTCACATTCCTAAACATATCAGACATGACTT------------TC------ATAC---------------AGCAA--GTGCCTCTAACACACCACCTACATCAGA--TCAGAGG-AATAGGCTCATATAAACAG-TCAGACCAAGA i canFam3.chr10 C 0 I 4 s dasNov3.JH570235 108979 163 + 1056298 GTAGAGGGGT--CCA---ACCACCAGTGCCCTGCAG-------GTCTTGGAGTTCGT-AATGTATTAAACACGATTTGTATATACCAAGCT------ATTTGCGTGCCTGCTT---TGCAA--TGACCTCTCCCACATCATCCATGTGACAGGTCATTATGGAT----TCACATATACAG-TTACACCAAGG i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 56314 2469 + 5963231 I a score=956969.000000 s hg38.chr22_GL383582v2_alt 115404 71 + 162811 ----CAAACAGTGGT--CAATGTTGGACAGAAGCAAAGGGGACTTGTGCTGAAATGA-ATAGATTC-ACAAGTCCCACA s panTro5.chr22 28895346 71 + 37823149 ----CAAACAGTGGT--CAATGTTGGACAGAAGCAAAGGGGACTTGTGCTGAAATGA-ATAGATTC-ACAAGTCCCACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169915 71 + 50109623 ----CAAACAGTGGT--CAATGTTGGACAGAAGCAAAGGGGACTTGTGCTGAAATGA-ATAGATTC-ACAAGTCCCACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192744 71 + 4464012 ----CAAACAGGGGT--CAATGTTGGACAGAAGCAAAGGGGACTTCTGCTGAAATGA-ATAGATTC-ACAAGTCCCACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688507 71 - 115148730 ----CAAACAGGGGT--CAATGTTGGACAGAAGCAAAGGGGACTTGTGCTGAAATGA-ATAGATTC-ACAAGTCCCACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304697 70 + 92844088 ----CAAACAGGGGT--CAATGCTGGACAGAAGCAAAGGGAAC-TGTGCAGAAATAA-ATAGATTC-CCAAGTCCCACA i rheMac8.chr10 I 4 C 0 s macFas5.chr10 87651062 70 - 96509753 ----CAAACAGGGGT--CAATGCTGGACAGAAGCAAAGGGAAC-TGTGCAGAAATAA-ATAGATTC-CCAAGTCCCACA i macFas5.chr10 I 4 C 0 s macNem1.NW_012012688v1 7147959 70 - 13098629 ----CAAACAGGGGT--CAATGCTGGACAGAAGCAAAGGGAAC-TGTGCAGAAATAA-ATAGATTC-CCAAGTCCCACA i macNem1.NW_012012688v1 I 4 C 0 s cerAty1.NW_011999588v1 4107826 70 - 4483953 ----CAAACAGGGGT--CAATGCTGGACAGAAGCAAAGGGAAC-TGTGCAGAAATAA-AGAGATTC-CCAAGTCCCACA i cerAty1.NW_011999588v1 I 4 C 0 s chlSab2.chr19 24738144 70 + 33263144 ----CAAACAGGGGT--CAATGCTGGACAGAAGCAAAGGGAAC-TGTGCAGAAATAA-ATAGATTC-CCAAGTCCCACA i chlSab2.chr19 I 4 C 0 s manLeu1.NW_012102031v1 14019152 66 - 14338769 ----CAAACAGGGGT--CAATGCTGGACAGAAGCAAAGGGAAC-TGTGCAG----AA-ATAGATTC-CCAAGTCCCACA i manLeu1.NW_012102031v1 I 4 C 0 s colAng1.NW_012115588v1 957400 70 + 1946073 ----CAAACAGGGGT--CAATGCTGGACAGAAGCAAAGGGAAC-TGTGCAGAAATAA-ATAGATTC-CCAAGTCCCACA i colAng1.NW_012115588v1 I 4 C 0 s calJac3.chrUn_GL286373 1983942 69 - 2117846 ----CAAACAGGGGT--CAATGTTGGACAGAAGCTAAGGGGAC-TGCACTGAAATGA-AT-GATTC-ACAAGTGCCACA i calJac3.chrUn_GL286373 I 4 C 0 s saiBol1.JH378157 8894986 69 - 16357246 ----CAAACAGCGGT--CAATGTTGGACAGAAGCTAAGGGGAC-TGCACTGAAATGA-AT-GATTC-ACAAGTGCCACA i saiBol1.JH378157 I 4 C 0 s cebCap1.NW_016107750v1 1380651 69 - 1807191 ----CAAACAGGGGT--CAATGTTGGACAGAAGCTAAGGGGAC-TGCACTGAAATGA-AT-GATTC-ACAAGTGCCACA i cebCap1.NW_016107750v1 I 4 C 0 s aotNan1.NW_018512383v1 58783 69 + 5963231 ----CAAACAGGGGT--CAATGTTGGACAGAAGCTAAGGGGAC-TGCACTGAAATGA-AT-GATTC-ACAAGTGCCACA i aotNan1.NW_018512383v1 I 2469 C 0 s micMur3.chr7 5747353 70 + 108171978 ----TAAACAGAGCT--CAAAGGTGGACAGAAGCAAAGGGGAA-TGTGCAGAAATGG-ATGGATTC-ACACATCCCACA i micMur3.chr7 I 4 C 0 s proCoq1.NW_012136747v1 5110753 70 - 6317780 ----TAAACAGAGCT--CAAAAGTGGACAGAAGCAAAGGGGAA-TGTGCAGAAATGA-GTGGATTC-ACACGTCCCACA i proCoq1.NW_012136747v1 I 4 I 372 s otoGar3.GL873526 36317717 71 - 42659167 ----TAAACATAGGC--CAAAGGTTGACAGAAGCAATGTGGAA-TGCGTAGAAATGA-ATGAAATCTATATATCCCATG i otoGar3.GL873526 I 4 C 0 s mm10.chr15 82848327 73 + 104043685 ----CATATAAGGTTTGTAAAGTTGAATTGAAGTAAAGGGAAC-AATACAGAAATGAGATAGACTC-AGAGAAGCCACA i mm10.chr15 C 0 C 0 s canFam3.chr10 46126600 67 - 69331447 ----TAAGCAGAGGT--CAAAGTCAGGCAAAACCAAAGAGGAC-TATTCAGAAATAA-ATGCA----CTAAATCCCACA i canFam3.chr10 I 4 C 0 s dasNov3.JH570235 109142 73 + 1056298 TAGATAAACATAAGT--CAAAACTAGACAAAATC-AAGGGGAC-TATGTAGAAACGA-ACAGATTC-AAAAGTCCCACA i dasNov3.JH570235 C 0 C 0 a score=33332.000000 s hg38.chr22_GL383582v2_alt 115475 2 + 162811 CT s panTro5.chr22 28895417 2 + 37823149 CT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169986 2 + 50109623 CT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192815 2 + 4464012 CT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688578 2 - 115148730 CT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304767 2 + 92844088 CT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651132 2 - 96509753 CT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148029 2 - 13098629 CT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107896 2 - 4483953 CT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738214 2 + 33263144 CT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019218 2 - 14338769 CT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957470 2 + 1946073 CT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984011 2 - 2117846 CT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8895055 2 - 16357246 CT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380720 2 - 1807191 CT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 58852 2 + 5963231 CT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5747423 2 + 108171978 CT i micMur3.chr7 C 0 I 345 s otoGar3.GL873526 36317788 2 - 42659167 CT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82848400 2 + 104043685 AT i mm10.chr15 C 0 C 0 s canFam3.chr10 46126667 2 - 69331447 CT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 109215 2 + 1056298 TT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5110823 372 - 6317780 I a score=195492.000000 s hg38.chr22_GL383582v2_alt 115477 17 + 162811 TGTGggaagggaaaaag s panTro5.chr22 28895419 17 + 37823149 TGTGGGAAGGGAAAAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41169988 17 + 50109623 TGTGGGAAGGGAAAAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192817 17 + 4464012 TGTGggaagggaaaaag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688580 17 - 115148730 TGTGGGAAGGGAAAAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304769 17 + 92844088 TGTGGGAAGGGAAAAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651134 17 - 96509753 TGTGGGAAGGGAAAAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148031 17 - 13098629 TGTGGGAAGGGAAAAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107898 17 - 4483953 TGTGGGAAGGGAAAAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738216 17 + 33263144 TGTGGGAAGGGAAAAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019220 17 - 14338769 TGTGGGAAGGGAAAAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957472 17 + 1946073 TGTGGGAAGGGAAAAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984013 17 - 2117846 TGTGGGAAGGGAAAAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8895057 17 - 16357246 TGTGGGAAGGGAAAAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380722 17 - 1807191 TGTgggaagggaaaaag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 58854 17 + 5963231 TGTgggaagggaaaaag i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36317790 15 - 42659167 --CAGAAAATGAAACAG i otoGar3.GL873526 C 0 I 127 s mm10.chr15 82848402 16 + 104043685 -GAGAGAGGGAGAAAAG i mm10.chr15 C 0 I 1 s canFam3.chr10 46126669 2 - 69331447 --------------CA- i canFam3.chr10 C 0 I 5 s dasNov3.JH570235 109217 8 + 1056298 ---------CAGAAAAG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5110823 372 - 6317780 I e micMur3.chr7 5747425 345 + 108171978 I a score=56372.000000 s hg38.chr22_GL383582v2_alt 115494 4 + 162811 gaag s panTro5.chr22 28895436 4 + 37823149 GAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170005 4 + 50109623 GAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192834 4 + 4464012 gaag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688597 4 - 115148730 GAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304786 4 + 92844088 GAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651151 4 - 96509753 GAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148048 4 - 13098629 GAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107915 4 - 4483953 GAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738233 4 + 33263144 GAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019237 4 - 14338769 GAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957489 4 + 1946073 GAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984030 4 - 2117846 GAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8895074 4 - 16357246 GAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380739 4 - 1807191 gaag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 58871 4 + 5963231 gaag i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82848419 4 + 104043685 GAAG i mm10.chr15 I 1 I 2899 s dasNov3.JH570235 109225 4 + 1056298 GAGG i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46126671 5 - 69331447 I e otoGar3.GL873526 36317805 127 - 42659167 I e proCoq1.NW_012136747v1 5110823 372 - 6317780 I e micMur3.chr7 5747425 345 + 108171978 I a score=4818.000000 s hg38.chr22_GL383582v2_alt 115498 15 + 162811 ----ggaaaaaggaaggga--- s panTro5.chr22 28895440 4 + 37823149 ----GGAA-------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170009 4 + 50109623 ----GGAA-------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192838 15 + 4464012 ----ggaaaaaggaaggga--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688601 3 - 115148730 ----GAA--------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304790 4 + 92844088 ----GAAA-------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651155 4 - 96509753 ----GAAA-------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148052 4 - 13098629 ----GAAA-------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107919 4 - 4483953 ----GAAA-------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738237 4 + 33263144 ----GAAA-------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019241 4 - 14338769 ----GAAA-------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957493 4 + 1946073 ----GAAA-------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984034 4 - 2117846 ----GGAA-------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8895078 4 - 16357246 ----GGAA-------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380743 4 - 1807191 ----ggaa-------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 58875 4 + 5963231 ----ggaa-------------- i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46126676 4 - 69331447 ----GGAA-------------- i canFam3.chr10 I 5 I 4 s dasNov3.JH570235 109229 11 + 1056298 GAATGAAG-----------GTG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36317805 127 - 42659167 I e proCoq1.NW_012136747v1 5110823 372 - 6317780 I e micMur3.chr7 5747425 345 + 108171978 I a score=59862.000000 s hg38.chr22_GL383582v2_alt 115513 8 + 162811 aGTAAACA s panTro5.chr22 28895444 7 + 37823149 -GTAAACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170013 7 + 50109623 -GTAAACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192853 8 + 4464012 aGTAAACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688604 7 - 115148730 -GTAAAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304794 7 + 92844088 -GTAAAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651159 7 - 96509753 -GTAAAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148056 7 - 13098629 -GTAAAGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107923 7 - 4483953 -GTAAAGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738241 7 + 33263144 -GTAAAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019245 7 - 14338769 -GTAAAGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957497 7 + 1946073 -GTAAAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984038 7 - 2117846 -GTGAAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8895082 7 - 16357246 -GTGAACG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380747 7 - 1807191 -gtgaagg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 58879 7 + 5963231 -gtgaagg i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36317932 8 - 42659167 ACTGAAGG i otoGar3.GL873526 I 127 C 0 s canFam3.chr10 46126684 8 - 69331447 ACTGAAAA i canFam3.chr10 I 4 C 0 e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 109240 0 + 1056298 C e proCoq1.NW_012136747v1 5110823 372 - 6317780 I e micMur3.chr7 5747425 345 + 108171978 I a score=381138.000000 s hg38.chr22_GL383582v2_alt 115521 33 + 162811 CCATTTTTAAATATAGAA-ATGTTCTA-----GTTTTCG s panTro5.chr22 28895451 33 + 37823149 CCATTTTTAAATATAGAA-ATGTTCTA-----GTTTTCG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170020 33 + 50109623 CCATTTTTAAATATAGAA-ATGTTCTA-----GTTTTCG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192861 33 + 4464012 CCCTTTTTAAATATAGAA-ATGTTCTA-----GTTTTTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688611 33 - 115148730 CCATTTTTAAATATAGAA-ATGTTCTA-----GTTTTCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304801 33 + 92844088 CCATTTTAAAATATAGAA-ATGTTCTA-----GTTTTTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651166 33 - 96509753 CCATTTTAAAATATAGAA-ATGTTCTA-----GTTTTTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148063 33 - 13098629 CCATTTTAAAATATAGAA-ATGTTCTA-----GTTTTTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107930 31 - 4483953 CCATTTTAAA--ATAGAA-ATGTTCTA-----GTTTTTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738248 33 + 33263144 CCATTTTAAAATATAGAA-ATGTTCTA-----GTTTTCG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019252 33 - 14338769 CCATTTTAAAATATAGAA-ATGTTCTA-----GTTTTTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957504 33 + 1946073 CCATTTTAAAATAAAGAA-ATGTTCTA-----GTTTTGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984045 32 - 2117846 CCATTTTTAAATATAG-A-ATGTTCTA-----ATTTTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8895089 32 - 16357246 CCGTTTTTAAATATAG-A-CTGTTCTA-----ATTTTTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380754 32 - 1807191 CCATTTTTAAATATAG-A-ATGTTCTA-----ATTTTCG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 58886 32 + 5963231 CCATTTTTAAATATAG-A-ATGTTCTA-----ATTTTTG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5747770 38 + 108171978 CCATTTTTTAATATAGGA-ATGTTCTATATTTGTTTTCA i micMur3.chr7 I 345 C 0 s otoGar3.GL873526 36317940 38 - 42659167 CCATTTTTAAATACAGGA-ATGTTCTATATTTGTTTTCA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46126692 33 - 69331447 CCATCTGCTTGAATAGGA-ATGTTCTA-----GTTTTCC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 109240 33 + 1056298 -TTTTTTTTTTTATAGAAGATGTTCTG-----GTCTTCA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e proCoq1.NW_012136747v1 5110823 372 - 6317780 I a score=5356189.000000 s hg38.chr22_GL383582v2_alt 115554 352 + 162811 GCAATTTTCAGAGTAGTGTGACAC----AGGGAGAGGAGC-AATGTCTCTTGAGGACTTCCCAATATTTT-AATATAACATCGTGCTTGTCAAAACACCTGATAAATACATAGGCCAAAATGGATCTCTAATGAAATAT--GTGACTTTATCTT-ACATGATAGGATTAAGGGCATGCTCATTAAGCAAGACCAAAACTGAATGCATCTATCTGCTAAAACCTAGTAAGATAAAACTAGACTC-AAAGTATCCTGGAC-AATTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAATTTGTCCTTGAGTGCACT--GAGAAAAGTAGAATAAAAGCTAGGTAAATAAA-A s panTro5.chr22 28895484 354 + 37823149 GCAATTTTCAGAGTAGTGTGACAC----AGGGAGAGGAGC-AATGTCTCTTGAGGACTTCCCAATATTTT-AATACAACATCGTGCTTGTCAAAACACCTGATAAATACATAGGCCAAAATGGATCTCTAATGAAATATATGTGACTTTATCTT-ACATGATAGGATTAAGGGCATGCTCATTAAGCAAGACCAAAACTGAATGCATCTATCTGCTAAAACCTAGTAAGATAAAACTAGACTC-AAAGTATCCTGGAC-AATTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAATTTGTCCTTGAGTGCACT--GAGAAAAGTAGAATAAAAGCTAGGTAAATAAA-A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170053 354 + 50109623 GCAATTTTCAGAGTAGTGTGACAC----AGGGAGAGGAGC-AATGTCTCTTGAGGACTTCCCAATATTTT-AATACAACATCGTGCTTGTCAAAACACCTGATAAATACATAGGCCAAAATGGATCTCTAATGAAATATATGTGACTTTATCTT-ACATGATAGGATTAAGGGCATGCTCATTAAGCAAGACCAAAACTGAATGCATCTATCTGCTAAAACCTAGTAAGATAAAACTAGACTC-AAAGTATCCTGGAC-AATTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAATTTGTCCTTGAGTGCACT--GAGAAAAGTAGAATAAAAGCTAGGTAAATAAA-A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3192894 354 + 4464012 GCAATTTTCAGAGTAGTGTGACAC----AGGGAGAGGAGC-AATGTCTCTTGAGGACTTCCCAATATTTT-AATATAACATCGTGCTTGTCAAAACACCTGATAAATACATAGGCCAAAATGGATCTCTAATGAAATATATGTGACTTTATCTT-ACATGATAGGATTAAGGGCATGCTCATTAAGCAAGACCAAAACTGAATGCATCTATCTGCTAAAACCTAGTAAGATAAAACTAGACTC-AAAGTATCCTGGAC-AATTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAGTTTGTCCTTGAGTGCACT--GAGAAAAGTAGAATAAAAGCTAGGTAAATAAA-A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688644 353 - 115148730 GCAATTTTCAGAGTAGTGTGACAC----AGGGAGAGAAGC-AATGTCTCTTGAGGACTTCCCAATATTTT-AATGTAACATCGTGCTTGTCAAAACACCTGATAAATACATAGGCCAAAATGGATCTCTAATGAAATATATGTGGCTTTATCTT-ACATGATAGGATTAAGGGCATGCTCATTAAGCAAGACCAAAACTGAATACATCTATCTGCT-AAACCTAGTAAGATAAAACTAGACTC-AAAGTATCCTGGAC-AATTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAACTTGTCCTTGAGTACATT--GAGAAAAGTAGAATAAAAGCTAGGTAAATAAA-A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84304834 349 + 92844088 GCAATTTTCAGAGTAGTGTGACAC----AGGGAGAGGAGC-AATGTCTCTTGAGGACTTCCCAATATTTT-AATGTAACATCGTGCTTGTCAAAACACCT----AATACACAGGCCAAAATGGATCTTTAATGAAATATACGTGGCTTTATCTT-ACATGATAGGATTAAGAGCATGCTCATTAAGCAAGACCAAAACTGAATACATCTATCTGCTAAAACCTA--AAGATAAAACTAGACTCAAAATTATCCTGGAC-AATTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAATTTGTCCTTGAGTGCATT--GAGAGAAGTAGAATAAAAGCTAGGTAAATAAA-A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651199 349 - 96509753 GCAATTTTCAGAGTAGTGTGACAC----AGGGAGAGGAGC-AATGTCTCTTGAGGACTTCCCAATATTTT-AATGTAACATCATGCTTGTCAAAACACCT----AATACACAGGCCAAAATGGATCTCTAATGAAATATACGTGGCTTTATCTT-ACATGATAGGATTAAGAGCATGCTCATTAAGCAAGACCAAAACTGAATACATCTATCTGCTAAAACCTA--AAGATAAAACTAGACTCAAAATTATCCTGGAC-AATTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAATTTGTCCTTGAGTGCATT--GAGAGAAGTAGAATAAAAGCTAGGTAAATAAA-A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148096 349 - 13098629 GCAATTTTCAGAGTAGTGTGACAC----AGGGAGAGGAGC-AATGTCTCTTGAGGACTTCCCAATATTTT-AATGTAACATCGTGCTTGTCAAAACACCT----AATACACAGGCCAAAATGGATCTCTAATGAAATATACGTGGCTTTATCTT-ACATGATAGGATTAAGAGCATGCTCATTAAGCAAGACCAAAACTGAATACATCTATCTGCTAAAACCTA--AAGATAAAACTAGACTCAAAATTATCCTGGAC-AATTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAATTTGTCCTTGAGTGCATT--GAGAGAAGTAGAATAAAAGCTAGGTAAATAAA-A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4107961 349 - 4483953 GCAATTTTCAGAGTAATGTGACAC----AGGGAGAGGAGC-AATGTCTCTTGAGGACTTCCCAATATTTT-AATGTAACATCGTGCTTGTCAAAACACCT----AATACACAGGCCAAAATGGATCTCTAATGAAATATACGTGGCTTTATCTT-ACATGATAGGATTAAGAGCATGCTCATTAAGCAAGACCAAAACTGAATACATCTATCTGCTAAAACCTA--AAGATAAAACTAGACTCAAAAGTATCCTGGAC-AATTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAATTTGTCCTTGAGTGCATT--GAGAGAAGTAGAATAAAAGCTAGGTAAATAAA-A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738281 351 + 33263144 GCAATTTTCAGAGTAGTGTGACAC----AGGGAGAGGAGC-AATGTCTCTTGAGGACTTCCCAATATTTT-AATGTAACATCGTGCTTGTCAAAACTCCT----AATACACAGGCCAAAATGGATCTCTAATGAAACATACGTGGCTTTATCTT-ACATGATAGGATTAAGAGCATGCTCATTAAGCAAGACCAAAACTGAATACATCTATCTGCTAAAACCTAATAAGATAAAACTAGACTCAAAAGTATCCTGGAC-AATTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAATTTGTCCTTGAGTGCATT--GAGAGAAGTAGAATAAAAGCTAGGTAAATAAA-A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019285 349 - 14338769 GCAATTTTCAGAGTAATGTGACAC----AGGGAGAGGAGC-AATGTCTCTTGAGGACTTCCCAATATTTT-AATGTAACATTGTGCTTGTCAAAACACCT----AATACACAGGCCAAAATGGATCTCTAATGAAATATACGTGGCTTTATCTT-ACATGATAGGATTAAGAGCATGCTCATTAAGCAAGACCAAAACTGAATACATCTATCTGCTAAAACCTA--AAGATAAAACTAGACTCAAAAGTATCCTGGAC-AATTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAATTTGTCCTTGAGTGCATT--GAGAGAAGTAGAATAAAAGCTAGGTAAATAAA-A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957537 350 + 1946073 GCAATTTTCAGAGTAGTGTGACAC----AGGGAGAGGAGC-AATGTCTCTTGAGGACTTCCCAATATTTT-AATGTAACATTGTGCTTGTCAAAACACCT----AATACACAGGTCAAAATGGATCTCTAATGAAATATATGTGGCTTTATCTT-ACATGACAGGATTAAGAGCATGCTCATTAAGCAAGACCAAAACTGAATACATCTATCTGCTAAAACCTAATAAAATAAAACTAGACTC-AAAGTATCCTAGAC-AACTGAAACATCATCTGTCAAATTAAATAA---AAGGTAAGTTAGTGTAATTTTAATTTGTCCTTGAATGCACT--GAGAGAAGTAGAATAAAAGCTAGGTAAATAAA-A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984077 350 - 2117846 GCAATTTTCAGAGCAGTGTGACAC----AGGGAGAGGAGC-AATGCCTCCTGAGGACTTTCTATTATTGT-ATTATAACATCATGCCTGTCAAAACACCTGATAAATACATAGGCCAAAATGGATCTCTAATGAAATATATGTGGCTTTATCTC-ACATGATAGGATTGAGGGCATGCTCATTAAGAAAGACCAAAATTGAATAT----ATCTGCTAAAACCTACTAAGATAAAACTAGACTG-AAAGTATCCTGGAC-AACTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAATTTGTCCTTGAGTGCATT--GAGAAAAGCAGAATAGAAGCTAGGTAAATAAA-A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8895121 350 - 16357246 GCAATTTTCAGAGCAGTGTGACAC----AGGGAGAGGAGC-AATGCCTCTTGGGGACTTTCTATTATTAT-ATTATAACATCATGCTTGTCAAAACACCTGATAAATACATAGGGCAAAACGGATCTCTAATGAAATATATGTGGCTTTATCTT-ACATGATACGATTGAGGGCATGTTCATTAAGCAAGACCAAAATTGAATAT----ATCTGCTAAAACCTACTACAATAAAACTAGACTC-AAAGTATCCTGGAC-AACTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTGAATTTGTCCTTGAGTGCATT--GGGAAAGGCAGAATAAAAGCTAGGTAAATAAA-A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1380786 338 - 1807191 GCAATTTTCAGAGCAGTGTGACAC----AGGGAGAGGAGC-AATGCCTCTTGGGGACTTTCTATTATTGT-ATTATAACATCATGCTTGTCAAAACACCTGATAAATACATAGGCCAAAATGGATCTCTAATAAAATATATGTGGCTTTATCTT-ACATGATAGGATTGAGGGCATGCTCATTAAGCAAGACCAAAATTGAATAC----ATCTGCTAAAATCTACTAAGATAAAACTAGACTC-AAAGTATCCTGGAC-AACTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAATTTGTCCTTGAATGCATT--GAGAAAAGCGGAATAAAAGCT------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 58918 350 + 5963231 GCAATTTTCAGAGCAGTGTGACAC----AGGGAGAGGAGC-AATGCCTCTTGAGGACTTTCTATTATTGT-ATTATAACATCATGCTTGTCAAAACACCTGATAAATACATAGGCCAAAATGGATCTCTAATGAAATATATGTGGCTTTATCTT-ACATGATAGGATTGAGGGCATGCTCATTAAGCAAGACCAAAATTGAATAC----ATCTGCTAAAACCTACTAAGATAAAACTAGACTC-AAAGTATCCTGGAC-AATTGAAACATCATCTGTCAAATTAAATAA---AAGGCAAGTTAGTGTCATTTTAATTTGTCCTTGAGTGCATT--GAGAAAAGCAGAATAAAAACTAGGCAAATAAA-A i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5747808 356 + 108171978 GCAATTTTCTGAGTAGTGTGACACTTAAAAGGAAAGGAGCTAGTGTCTCTTGAGAATTTCATATTATTTT-GTTATAACGTTATGCTTGTCAAAACACCTGATAAATACTTAGGCCAAAATGGATTTCTAATGAAATATATGTGGCCTTATCTT-ACatgataggattgcaggcatgctcattaagctagaccaaaattgaatgc----atctgctaaaacccaggaagataaaactagactc-aaagtaaccttgacaaattaaaacatcatctatcaaaTTAAATAAAAGAAGGCAAGTTAGTGTAATTTTAATTTG---TTGAGTACGTT--AAGAAAAAGAGAATAAAAGCTAGATAAATAAAA- i micMur3.chr7 C 0 I 921 s proCoq1.NW_012136747v1 5111195 352 - 6317780 GCAATTTTCTGAGTAGTGTGACACTTAAAGGGAAAGGAGCTAGTGTCTCTCGAGAATTTCACATTATTTT-GTTATAATATTGTGCTTGTCAAAACACCTGATAAATACATAGGCCAAAATGGATTTCTAATGAAATACATGTGGCCTTATCTT-ACATGATAGGATTGCAGGCATGCTTATTAAGCTGGACCAAAATTGAATGC----ATCTGCTAAAACCCAGGAAGATAAAACTAGACTC-AAAGTAACCTTGACAAATTAAAACATCATCTATCAAATTAAATAA---AAGGCAAGTTAGTGTAATTTTAATTTG---TTGGGCACATT--AAGAAAAAGAGAATAAAAGCTAGATAAATAAA-- i proCoq1.NW_012136747v1 I 372 C 0 s otoGar3.GL873526 36317978 350 - 42659167 GTAAGTTTCTGAGTAGTATGACAC----AGAGAAAGGCGTTACTATCTCTTGAGAATTTCACATTATTTT-GTT-TAATATTATGCTTGTCAAAACAGCTGATAAATACATAGACCAAAATGGATTTCTAATGAAATCTACGTGGCCTTATctt-acatgataggattgcaggcatgctcattaagcaagaccaaaattgaaggc----atctgctaaaacccaggacgataaaactagactc-taactgaccttgacaaatgaaaacATCATCTATCAAATTAAATGAAAGAAGGCAAGTTAGTGTAATTTTAATTTGTTCTTGAGTACATT-----AAAAAAGGAGTAAAAGCTACATAAATAAA-- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46126725 347 - 69331447 GCAGTTGTCA---CAGTATGACAC----AGGAAGGGAGCC-GCTGTCTCTCGAGGACTTCATATTATTTT-GTTATAATATCATGCTTGTCAAAACACCTGATAAACACATGGGCCAAAATGGATCTCTAATGAAATATATGTGGCCTTATCTCAACATGATAGGATTGGGAGCATGCTTGTTAAGC-GGGCTGAAATTGAATGC----ATCTGCTAAAACCT---AAGATAAAACTAGACTC-AAAGTGGCCTTGACAAATTGAAACAGCATCTATCAAATTAAATAAGAGAAGGCAAGTTAGTGTAATTTTAATTTGTTCCCAAGTACATC---AGGAAAGGAGAATAAAAACCAGGCAAATGAA-A i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 109273 345 + 1056298 GCACTTTTCAGT-----------C----TGGGAGAAGAGCTACTGTCTCTGGAGGACTTCATATTTTTTTGGTTATAATATCACGCTTGTCAAAACACCTGATAAATACATAGGCCAAAAGAGATCTCTAATGAATTATGTGTGGCCTTATctt-agatggtagaactgagagcatgttcattatgt-agaccaaaattgcatgc----atctgctaaaacaaag-aagataaaacaagactc-aaagtgaccttgacaaaccgaaacatcatctatcaaaTTAAGTAAAAGAAGGCAAGATAGTGTAATCTTTATTTGTTCTTGAGTATATTTAAGAAAAAAGAGAATTAAAAATAGGCAAACAAA-A i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I a score=643561.000000 s hg38.chr22_GL383582v2_alt 115906 64 + 162811 GCTAGAAACGGATCTTATAGTGATAGTGGTACATC----AGCTCAAAGAGACA-ACAAGCC---TAAC----tttt s panTro5.chr22 28895838 64 + 37823149 GCTAGAAACGGATCTTATAGTGATAGTGGTACATC----AGCTCAAAGAGACA-ACAAGCC---TAAC----tttc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170407 64 + 50109623 GCTAGAAACGGATCTTATAGTGATAGTGGTACATC----AGCTCAAAGAGACA-ACAAGCC---TAAC----tttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193248 64 + 4464012 GCTAGAAACGGATCTTATAGTGATAGTGGTACATC----AGCTCAAAGAGACA-ACAAGCC---TAAC----tttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106688997 64 - 115148730 GCTAGAAAAGGATCTTATAGTGATAGTGGTACATC----AGCTCAAAGAGACA-ACAAGCC---TAAC----tttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305183 68 + 92844088 GCTAGAAACGGATCTTATAGTGATAGTGGTACATC----AGCTCTAAGAGACA-ATAAGCT---TAACtttttttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651548 68 - 96509753 GCTAGAAACGGATCTTATAGTGATAGTGGTACATC----AGCTCTAAGAGACA-ATAAGCT---TAACtttttttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148445 62 - 13098629 GCTAGAAACGGATCTTATAGTGATAGTGGTACATC----AGCTCTAAGAGACA-ATAAGCT---TAAC------tt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108310 65 - 4483953 GCTAGAAACGGATCTTATAGTGATAGTGGTACATC----AGCTCTAAGAGACA-ATAAGCC---TAAC---ttttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738632 62 + 33263144 GCTAGAAACGGATCTTATAGTGATAGTGGTACATC----AGCTCTAAGAGACA-ATAAGCC---TAAC------tt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019634 60 - 14338769 GCTAGAAACGGATCTTATAGTGATAGTGGTACATC----AGCTCCAAGAGACA-ATAAGCC---t--t------tt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957887 57 + 1946073 GCTAGAAACGGATCTTATAGTGATAGTGGTACATC----AGCTCGAAGAGACA-ACAAGCC---t----------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984427 59 - 2117846 ACTAGAAACAGATCTCGTAGTCACAGTGGTACATC----AGCTCAAAGAGAC----AAGCC---TAAt------tt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8895471 59 - 16357246 ACGAGAAACAGATCTAGTAGTCATAGTGGTACATC----AGCTCAAAGAGAC----AAGCC---TAAt------tt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1381124 56 - 1807191 ---AGAAACAGATCTAGTAGTCATAGTGGTACATC----AGCTGAAAGACAC----AAGAC---TAAt------tt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 59268 59 + 5963231 ACTAGAAACAGATCTAGTAGTCATAGTGGTACATC----AGCTCAAAGAGAC----AAGCC---TAAt------tt i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5111547 61 - 6317780 ---ACAAAAGGATCTTGTAGCCATAGTGAAACATC----AGCTCAAAGAGTTC-ACAAGTC---TAAC----TTTT i proCoq1.NW_012136747v1 C 0 I 869 s otoGar3.GL873526 36318328 61 - 42659167 ---ACAAAAAGATCTTGTAGTCATAATGGAGTATC----AGCTCAAAGAGCCC-ACAAGTC---TAAT----TTTT i otoGar3.GL873526 C 0 I 825 s canFam3.chr10 46127072 67 - 69331447 --CAGAAAAAGATCTTGTAGTCATAGTGGAACATTAGTGAGCTCAAAAAGCCA---AAGCTGCATAAA----TGTT i canFam3.chr10 C 0 I 8 s dasNov3.JH570235 109618 63 + 1056298 --CTGAAAAGGATCTTGTAGGCAGAGTGGAACATT----AGCTAAAAGAGGCAGAGACGTG---AAAT----TTTT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e micMur3.chr7 5748164 921 + 108171978 I a score=16095.000000 s hg38.chr22_GL383582v2_alt 115970 11 + 162811 ------ttcttattttt s panTro5.chr22 28895902 11 + 37823149 ------ttcttattttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170471 11 + 50109623 ------ttcttattttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193312 11 + 4464012 ------ttctttttttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689061 10 - 115148730 ------ttctt-ttttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305251 11 + 92844088 ------ttttttttttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651616 11 - 96509753 ------ttttttttttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148507 11 - 13098629 ------ttttttttttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108375 11 - 4483953 ------ttttttttttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738694 11 + 33263144 ------ttttttttttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019694 11 - 14338769 ------ttttttttttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957944 9 + 1946073 --------ttttttttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984486 8 - 2117846 ------gtttgt---ta i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8895530 5 - 16357246 ------gtttg------ i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1381180 7 - 1807191 ------gtttg----tt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 59327 11 + 5963231 ------gtttgtttgtt i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46127147 5 - 69331447 ------TTTTT------ i canFam3.chr10 I 8 I 1154 s dasNov3.JH570235 109681 11 + 1056298 TAACCATTTTT------ i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36318389 825 - 42659167 I e proCoq1.NW_012136747v1 5111608 869 - 6317780 I e micMur3.chr7 5748164 921 + 108171978 I a score=10920.000000 s hg38.chr22_GL383582v2_alt 115981 1 + 162811 t s panTro5.chr22 28895913 1 + 37823149 t i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170482 1 + 50109623 t i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193323 1 + 4464012 t i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689071 1 - 115148730 t i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305262 1 + 92844088 t i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651627 1 - 96509753 t i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148518 1 - 13098629 t i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108386 1 - 4483953 t i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738705 1 + 33263144 t i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019705 1 - 14338769 t i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957953 1 + 1946073 t i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984494 1 - 2117846 t i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1381187 1 - 1807191 t i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 59338 1 + 5963231 t i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 109692 1 + 1056298 T i dasNov3.JH570235 C 0 I 873 e mm10.chr15 82848423 2899 + 104043685 I e canFam3.chr10 46127152 1154 - 69331447 I e otoGar3.GL873526 36318389 825 - 42659167 I e proCoq1.NW_012136747v1 5111608 869 - 6317780 I e micMur3.chr7 5748164 921 + 108171978 I e saiBol1.JH378157 8895535 0 - 16357246 C a score=2072585.000000 s hg38.chr22_GL383582v2_alt 115982 217 + 162811 ttagagattgaatcc--cactcagtcgcccaggctagagtgcagtggcaccatcttggctcactgcaacctccgtctcctaggctcaagccattctcctgcctcagcctcccgagtagctgggattacaggtgcctgtcaccatgtccagctaatttttgcatatttttagtagacac-ggggtttgaccatgttggccaggctggtcttgaactcctga s panTro5.chr22 28895914 217 + 37823149 ttggagattgaatcc--cactcagtcgcccaggctagagtgcagtggcacagtcttggctcactgcaacctccgtctcctaggctcaagccattctcctgcctcagcctcccgagtagctgggattacaggtgcctgccaccatgtccagctaagttttgcatatttttagtagacac-ggggtttgaccatgttggccaggctggtcttgaactcctga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170483 217 + 50109623 ttggagattgaatcc--cactcagtcgcccaggctagagtgcagtggcacagtcttggctcactgcaacctccgtctcctaggctcaagccattctcctgcctcagcctcccgagcagctgggattacaggtgcctgccaccatgtccagctaagttttgcatatttttagtagacac-ggggtttgaccatgttggccaggctggtcttgaactcctga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193324 217 + 4464012 ttggagattgaatcc--cactcagtcgcccaggctagagtgcagtggcacaatcttggcttactgcaacctccgtctcctaggctcaagccattctcctgcctcagcctcccgagcagctgggattacaggtgcctgccaccatgcccagctaatttttgcatatttttagtagacac-ggggtttgaccatgttggccaggctggtcttgaactcctga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689072 217 - 115148730 ttggagatagaatcc--cgctcagttgcccaggctagagtgcagtggcacaatcttggctctctgcaacctccgtctcctaggctcaagccattctcctgcctcagcctcctgagtagctgggattacaggtgcccgccaccatgcccagctaatttttgcatatttttagtagagac-ggggtttgaccacgttggccaggctcgtcttgacctcctga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305263 217 + 92844088 tttgagacggagtct--tgctctgtcgcccaggctagagtgcagtggcacaatcttggctcactgcaacctctgcctcctaggctcaagccattctcctgcctcagcctcccgagtagctgggattacaggtgcccaccaccatgcccagctaatttttatatatttttagtagagac-ggggtttgaccatgttggctaggctgatcttgaactcctga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651628 217 - 96509753 tttgagacggagtct--cgctctgtcgcccaggctagagtgcagtggcacaatcttggctcactgcaacctctgcctcctaggctcaagccattctcctgcctcagcctcccgagtagctgggattacaggtgcccaccaccatgcccagctaatttttgtatatttttagtagagac-ggggtttgaccatgttggctaggctgatcttgaactcctga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148519 217 - 13098629 tttgagacggagtct--cgctctgtcgcccaggctagagtgcagtggcacaatcttggctcactgcaacctctgcctcctaggctcaagccattctcctgcctcagcctcccgagtagctgggattacaggtgcccaccaccatgcccagctaatttttgtatatttttagtagagac-ggggtttgaccatgttggctaggctgatcttgaactcctga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108387 217 - 4483953 tctgagacagaatcc--cgctcagtcgcccaggctagagtgcagtggcacaatcttggctcactgcaacctctgcctcctaggctcaagctattctcctgcctcagcctcccgagtagctgggattacaggtgcccaccaccatgcccagctaatttttgtatatttttagtagagac-ggggtttgaccatgttggctaggctgatcttgaactcctga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738706 217 + 33263144 tttgagacacaatcc--cgctcagtcgcccaggctagagtgcagtggcacaatcttggctcactgcaacctctgcctcctaggctcaagccattctcctgcctcagcctcccgagtagctgggattacaggtgtccaccaccatgcccaactaatttttgtatatttttagtagagac-ggggtttgaccatgttggctaggctgatcttgaactcctga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019706 217 - 14338769 tctgagacagaatcc--cgctcagtcgcccaggctagagtgcagtggcacaatcttggctcactgcaacctctgcctcctaggctcaagctattctcctgcctcagcctcccgagtagctgggattacaggtgcccaccaccatgcccagctaatttttgtatatttttagtagagac-ggggtttgaccatgttggctaggctgatcttgaactcctga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 957954 217 + 1946073 tttgagacagaatcc--cgctcagtcgcccaggctagagtgcagtggtacaatcttggctcactgcaacctctgcctcctaggctcaagccattctcctgcctcagcctcccgagtagctgggattacaggtgcccaccaccatgcccagctaatttttgtatatttttagtagagac-ggggtttgaccatgttggctaggctgatcttgaactcctga i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984495 206 - 2117846 tttaagacagagtcccacactcagttgcctaagatggagtgcagtggtgcaattttggctcactgcaacctct--------ggctcaagccattctcctgtctcagcctcctgagtagctgggcttacaggcgaccaccaccatgcccggctaagtattc-----ttttagtagagac-ggggtttcaccatgttggccaggctggtctcaaactcctga i calJac3.chrUn_GL286373 C 0 I 14 s saiBol1.JH378157 8895535 215 - 16357246 tttaagacagagtcc--cactcagtcgcctaagatggagtgcggtggcacaattttggctcactgcaacctctgcctcccgggctcaagccattctcctgtcccagcctcctgagtagctgggattacaggtgactgccaccatgcctggctaagtattc--tatttttagtagagat-ggggtttcaccatgttggccaggctggtcttgaactcttga i saiBol1.JH378157 C 0 I 14 s cebCap1.NW_016107750v1 1381188 216 - 1807191 tttaagacagagtcc--cactcagtcgcctaagatggagtgcagtggcgcaattttggctcactgcaacctctgcctactgggctcaagccattctcctgccccagcctcctgagtagctgggattacaggtgaccaccaccatgccaggctaagtattc--tatttttagtagaatcgggggtttcaccatgttagccaggatggtctcgaactcctga i cebCap1.NW_016107750v1 C 0 I 225 s aotNan1.NW_018512383v1 59339 215 + 5963231 tttaagacagagtcc--cactcagttgcctaagatggagcgcagtggcacaattttggcttactgcaacctctgcctcccgggctcaagccattctcctgtcccagcctcctgagtagctgggattacaggcgaccaccaccatgcccagctaagtattc--tatttttagtagagac-agggtttcaccatgttggccaggctggtctcgaactcctga i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 109693 873 + 1056298 I e canFam3.chr10 46127152 1154 - 69331447 I e otoGar3.GL873526 36318389 825 - 42659167 I e proCoq1.NW_012136747v1 5111608 869 - 6317780 I e micMur3.chr7 5748164 921 + 108171978 I a score=48776.000000 s hg38.chr22_GL383582v2_alt 116199 5 + 162811 cctca s panTro5.chr22 28896131 5 + 37823149 cctca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170700 5 + 50109623 cctca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193541 5 + 4464012 cctca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689289 5 - 115148730 cctca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305480 5 + 92844088 cctca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651845 5 - 96509753 cctca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148736 5 - 13098629 cctca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108604 5 - 4483953 cctca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738923 5 + 33263144 cctca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019923 5 - 14338769 cctca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958171 5 + 1946073 cctca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984715 5 - 2117846 cctca i calJac3.chrUn_GL286373 I 14 C 0 s saiBol1.JH378157 8895764 5 - 16357246 cctca i saiBol1.JH378157 I 14 C 0 s aotNan1.NW_018512383v1 59554 5 + 5963231 tctca i aotNan1.NW_018512383v1 C 0 I 223 e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 109693 873 + 1056298 I e canFam3.chr10 46127152 1154 - 69331447 I e otoGar3.GL873526 36318389 825 - 42659167 I e proCoq1.NW_012136747v1 5111608 869 - 6317780 I e micMur3.chr7 5748164 921 + 108171978 I e cebCap1.NW_016107750v1 1381404 225 - 1807191 I a score=418395.000000 s hg38.chr22_GL383582v2_alt 116204 58 + 162811 ggcgatctgcccacctcggcctcccaaagtgctgggactacaggcgtgagccatcatg s panTro5.chr22 28896136 58 + 37823149 ggcaatctgcccacctcggcctcccaaagtgctgggactacaggcgtgagccatcatg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170705 58 + 50109623 ggcaatctgcccacctcggcctcccaaagtgctgggactacaggcgtgagccatcatg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193546 58 + 4464012 ggcgatctgcccacctcggcctcccaaagtgctgggactacaggcgtgaaccatcatg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689294 58 - 115148730 ggcgatccgcccacctcggcctcccaaagtgctgagattacaggcgtgagccatcgtg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305485 58 + 92844088 ggtgatccacctacctcggcctcccaaagtgctgggattacaggtgtgagtcatcaca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651850 58 - 96509753 ggtgatccacctacctcggcctcccaaagtgctgggattacaggtgtgagtcatcaca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148741 58 - 13098629 ggtgatccacctacctcggcctcccaaagtgctgggattacaggtgtgagtcatcaca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108609 58 - 4483953 ggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagtcatcaca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738928 58 + 33263144 ggtgatccacctacctcggcctcccaaagtgctgggattacaggcgtgagtcatcaca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019928 58 - 14338769 ggtgatccacccacctcggcctctctaagtgctgggattacaggcgtgagtcatcaca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958176 58 + 1946073 ggtgatccacctacctcggcctcccaaagtgctgggattacaggcgtatgtcatcaca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984720 58 - 2117846 ggcaatcaacttgtcttagcctcccaaagtgctgggattacaggtgtgagccaccacg i calJac3.chrUn_GL286373 C 0 I 143 s saiBol1.JH378157 8895769 58 - 16357246 ggcaatcaacctgtctcagcctcccaaagtgctgggattacaggcgtgagccaccacg i saiBol1.JH378157 C 0 I 151 e aotNan1.NW_018512383v1 59559 223 + 5963231 I e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 109693 873 + 1056298 I e canFam3.chr10 46127152 1154 - 69331447 I e otoGar3.GL873526 36318389 825 - 42659167 I e proCoq1.NW_012136747v1 5111608 869 - 6317780 I e micMur3.chr7 5748164 921 + 108171978 I e cebCap1.NW_016107750v1 1381404 225 - 1807191 I a score=42678.000000 s hg38.chr22_GL383582v2_alt 116262 9 + 162811 ctcggccCA s panTro5.chr22 28896194 9 + 37823149 cccggccCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170763 9 + 50109623 cccggccCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193604 9 + 4464012 cccggccCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689352 9 - 115148730 cccggccCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305543 9 + 92844088 ccgggccTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651908 9 - 96509753 ctgggccTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148799 9 - 13098629 ccgggccTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108667 9 - 4483953 cccggccTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738986 9 + 33263144 cctggccTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019986 9 - 14338769 cccggccTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958234 9 + 1946073 cccggccTA i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36319214 9 - 42659167 CTCTACACT i otoGar3.GL873526 I 825 C 0 e aotNan1.NW_018512383v1 59559 223 + 5963231 I e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 109693 873 + 1056298 I e canFam3.chr10 46127152 1154 - 69331447 I e proCoq1.NW_012136747v1 5111608 869 - 6317780 I e micMur3.chr7 5748164 921 + 108171978 I e cebCap1.NW_016107750v1 1381404 225 - 1807191 I e saiBol1.JH378157 8895827 151 - 16357246 I e calJac3.chrUn_GL286373 1984778 143 - 2117846 I a score=10920.000000 s hg38.chr22_GL383582v2_alt 116271 1 + 162811 A s panTro5.chr22 28896203 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170772 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193613 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689361 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305552 1 + 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651917 1 - 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148808 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108676 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738995 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019995 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958243 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s micMur3.chr7 5749085 1 + 108171978 A i micMur3.chr7 I 921 C 0 s proCoq1.NW_012136747v1 5112477 1 - 6317780 A i proCoq1.NW_012136747v1 I 869 C 0 s otoGar3.GL873526 36319223 1 - 42659167 A i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46128306 1 - 69331447 A i canFam3.chr10 I 1154 C 0 e aotNan1.NW_018512383v1 59559 223 + 5963231 I e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 109693 873 + 1056298 I e cebCap1.NW_016107750v1 1381404 225 - 1807191 I e saiBol1.JH378157 8895827 151 - 16357246 I e calJac3.chrUn_GL286373 1984778 143 - 2117846 I a score=101216.000000 s hg38.chr22_GL383582v2_alt 116272 7 + 162811 GACCTGA s panTro5.chr22 28896204 7 + 37823149 GACCTGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170773 7 + 50109623 GACCTGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193614 7 + 4464012 GACCTGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689362 7 - 115148730 GACCTGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305553 7 + 92844088 GACCTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651918 7 - 96509753 GACCTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148809 7 - 13098629 GACCTGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108677 7 - 4483953 GACCTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24738996 7 + 33263144 GACCTGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14019996 7 - 14338769 GACCTGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958244 7 + 1946073 GACCTGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984921 7 - 2117846 GACCTGG i calJac3.chrUn_GL286373 I 143 C 0 s saiBol1.JH378157 8895978 7 - 16357246 GACCTGG i saiBol1.JH378157 I 151 C 0 s aotNan1.NW_018512383v1 59782 7 + 5963231 GACCTGG i aotNan1.NW_018512383v1 I 223 C 0 s micMur3.chr7 5749086 7 + 108171978 GACTTGG i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5112478 7 - 6317780 GACTTGG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36319224 7 - 42659167 GACTTGG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46128307 7 - 69331447 GACCTGT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 110566 7 + 1056298 GATTAGG i dasNov3.JH570235 I 873 C 0 e mm10.chr15 82848423 2899 + 104043685 I e cebCap1.NW_016107750v1 1381404 225 - 1807191 I a score=1193582.000000 s hg38.chr22_GL383582v2_alt 116279 74 + 162811 ATTGAGACACAGGATCTAGAGATTTGCTGGGGAAGATTTAGC---CTGATTACT-----GATTATCAATTATTGCTATAGAA s panTro5.chr22 28896211 74 + 37823149 ATTGAGACACAGGATCTAGAGATTTGCTGGGGAAGATTTAGC---CTGATTATT-----GATTATCAATTATTGCTATAGAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170780 74 + 50109623 ATTGAGACACAGGATCTAGAGATTTGCTGGGGAAGATTTAGC---CTGATTATT-----GATTATCAATTATTGCTATAGAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193621 74 + 4464012 ATTGAGACACAGGATCTAGAGATTTGCTGGGGAAGATTTAGC---CTGATTATT-----GATTATCAATTATTGCTATAGAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689369 74 - 115148730 ATTGAGACACAGGATCTAGAGATTTGCTGGGCAAGATTTAGC---CTGATTATT-----GATTATCAATTATTGCTATAGAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305560 74 + 92844088 ATTGAGACACAGGATCTAGAGATTTGCTGGGGAATATTTAGC---CTGATTGTT-----GATTATCAATTATTGCTATAGAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651925 74 - 96509753 ATTGAGACACAGGATCTAGAGATTTGCTGGGGAATATTTAGC---CTGATTGTT-----GATTATCAATTATTGCTATAGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148816 74 - 13098629 ATTGAGACACAGGATCTAGAGATTTGCTGGGGAATATTTAGC---CTGATTGTT-----GATTATCAATTATTGCTATAGAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108684 74 - 4483953 ATTGAGACACAGGATCTAGAGACTTGCTGGGGAATATTTAGC---CTGATTGTT-----GATTATCAATTATTGCTATAGAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739003 74 + 33263144 ATTGAGACACAGGATCTAGAGATTTGCTGGGGAATATTTAGC---CTGATTGTT-----GATTATCAATTATTGCTATAGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020003 74 - 14338769 AATGAGACACAGGATCTAGAGATTTGCTGGGGAATATTTAGC---CTGATTGTT-----GATTATCAATTATTGCTATAGAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958251 74 + 1946073 ATTGAGACACAGGATCTAGAGATTTGCTGGGGAATATTTAGC---CTGATTGTT-----GATTATCAATTATTGCTATAGAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1984928 74 - 2117846 ATTGAGATGCAGGATCTAGAGATTTGCTGGGGAAGATTTAGC---CTGTTTACT-----GATTACCAATTATTGCTACAGAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8895985 74 - 16357246 ATTGAGATACAGGATCTAGAGATTTGCTGGGGAAGATTTAGC---CTGATTACT-----GATTACCAATTATTGCTACAGAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1381629 74 - 1807191 ATTGAGACACAGGATCTAGAAATTTGCTGGGGAAAATTTAGC---CTGATTACT-----GATTATCAATTATTGCTACAGAA i cebCap1.NW_016107750v1 I 225 C 0 s aotNan1.NW_018512383v1 59789 74 + 5963231 ATTGAGACACAGGATCTAGAGATTTGCTGGGGAAGATTTAGC---CTGATTACT-----GATTACCAATTATTGCTACAGAA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5749093 74 + 108171978 ATTGAGACACATGATCTAGAGATTTGCTGGGCAGGATATGCC---CTAATAACT-----GGTTACTAATTATTGCTATAGAA i micMur3.chr7 C 0 I 45 s proCoq1.NW_012136747v1 5112485 74 - 6317780 ATTGAGACACAAGATCTAGGAATTTGCCGGGCAGGATTTACC---CTAGTTACT-----GGTTACCAATTATTGCTATAGAA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36319231 74 - 42659167 ACTGAGACACAAGATCCAGGGATTTGCTGGGCAGGATTTAGC---CTATTTATT-----GGTTACCAATTATTGCTATAGAA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46128314 77 - 69331447 TTTGAGACACAGGATTTAGAGATCTGCTGAGTAGGAGTTAGCTTGCTGATTACT-----GGTTACCAATTACTGCTACAGAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 110573 78 + 1056298 ATTGAAACAT-GGATCTAGGGATTTGCTGTGATCCATTTAGC---CTGCTGATTTTACAGGTTACCAGTTATTGCTATAGAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I a score=351514.000000 s hg38.chr22_GL383582v2_alt 116353 24 + 162811 CACCTAAAAGTTTACACAAAAAAA s panTro5.chr22 28896285 24 + 37823149 CACCTAAAAGTTTACACAAAAAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170854 24 + 50109623 CACCTAAAAGTTTACACAAAAAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193695 24 + 4464012 CACCTAAAAGTTTACACAAAAAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689443 24 - 115148730 CGCCTAAAAGTTTACACATAAAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305634 24 + 92844088 TGCCTAAAAGTTTACACATAAAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87651999 24 - 96509753 TGCCTAAAAGTTTACACATAAAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148890 24 - 13098629 TGCCTAAAAGTTTACACATAAAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108758 24 - 4483953 TGCCTAAAAGTTTACACATAAAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739077 24 + 33263144 TGCCTAAAAGTTTACACATAAAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020077 24 - 14338769 TGCCTAAAAGTTTACACATAAAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958325 24 + 1946073 TGCCTAAAAGTTTACACATAAAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985002 24 - 2117846 TGCCTAAAAGTTTACACATAAAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896059 24 - 16357246 TGCCTAAAAGTTTACACATAAAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1381703 24 - 1807191 TACCTAAAAGTTTACACATAAAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 59863 24 + 5963231 TGCCTAAAAGTTTACACATAAAAA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5112559 24 - 6317780 TATCCAAAAGTTTACACATAAAAA i proCoq1.NW_012136747v1 C 0 I 2 s otoGar3.GL873526 36319305 24 - 42659167 TGCCCAAAAGTTTACACATAAGAA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46128391 24 - 69331447 TGTTCAACAGTTTACACATAGAAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 110651 24 + 1056298 CGCTGAGAAATTTACCCATAAAAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e micMur3.chr7 5749167 45 + 108171978 I a score=62447.000000 s hg38.chr22_GL383582v2_alt 116377 22 + 162811 CTGGGCTGAGATATGT---TAATAA s panTro5.chr22 28896309 22 + 37823149 CTGGGCTGAGATATGT---TAATAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170878 22 + 50109623 CTGGGCTGAGATATGT---TAATAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193719 22 + 4464012 CTGGGCTGAGATATGT---TAATAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689467 22 - 115148730 CTGGGCTGAGATATGT---TAATAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305658 20 + 92844088 CTGTGC-----TATGTTAATAATAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652023 20 - 96509753 CTGTGC-----TATGTTAATAATAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148914 20 - 13098629 CTGTGC-----TATGTTAATAACAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108782 20 - 4483953 CTGTGC-----TATGTTAATAATAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739101 17 + 33263144 CTGTGC-----TATGT---TAATAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020101 20 - 14338769 CTGTGC-----TATGTTAATAATAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958349 20 + 1946073 CTGTGC-----TATGTTAATAATAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985026 18 - 2117846 TTGTGCTGAA-TATGT------TAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896083 18 - 16357246 CTGTGCTGAA-TATGT------TAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1381727 18 - 1807191 CTGTGCTGAA-TATGT------TAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 59887 18 + 5963231 CTGTGCTGAA-TATGT------TAA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36319329 1 - 42659167 ---------------T--------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46128415 22 - 69331447 TTACTCTGACAGATAT---TAATAA i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 110675 22 + 1056298 TTGCACTGAAAGACCT---TAAAAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e proCoq1.NW_012136747v1 5112583 2 - 6317780 I e micMur3.chr7 5749167 45 + 108171978 I a score=562511.000000 s hg38.chr22_GL383582v2_alt 116399 45 + 162811 ---TAAATGTTGAAATAACGAA----------AACAC-TGTCAGATGGTCACATACACA---- s panTro5.chr22 28896331 45 + 37823149 ---TAAATGTTGAAATAACGAA----------AACAC-TGTCAGATGGTCACATACACA---- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170900 45 + 50109623 ---TAAATGTTGAAATAACGAA----------AACAC-TGTCAGATGGTCACATACACA---- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193741 45 + 4464012 ---TAAATGTTGAAATAACGAA----------AACAC-TGTCAGATGGTCACATACACA---- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689489 45 - 115148730 ---TAAATGTTGAAATAACGAA----------AACAC-TGTCAGATGGTCACATACACA---- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305678 45 + 92844088 ---TAAATGTTGAAATAACGAA----------AACAC-TGTCAGATGGTCACATACACA---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652043 45 - 96509753 ---TAAATGTTGAAATAACGAA----------AACAC-TGTCAGATGGTCACATACACA---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148934 45 - 13098629 ---TAAATGTTGAAATAACGAA----------AACAC-TGTCAGATGGTCACATACACA---- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108802 45 - 4483953 ---TAAATGTTGAAATAACGAA----------AACAC-TGTCAGATGGTCACATACACA---- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739118 45 + 33263144 ---TAAATGTTGAAATAATGAA----------AACAC-TGTCAGATGGTCACATACACA---- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020121 45 - 14338769 ---TAAATGTTGAAATAACGAA----------AACAC-TGTCAGATGGTCACATACACA---- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958369 45 + 1946073 ---TAAATGTTGAAATAACGAA----------AACAC-TGTCAGATGGTCACATACACA---- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985044 52 - 2117846 ---TAAATGTTGAAATTAAAAAAAAAAA----AACACTTGTCAGAGGGTTGCATACACG---- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896101 56 - 16357246 ---TAAATGTTGAAATAAAAAAAAAAAAAACCAACACTTGTCAGATGATTGCATACACA---- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1381745 46 - 1807191 ---TAAATGTTGAAATAAAAAA----------AACACTTGTCAGATGGTTGCATACACA---- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 59905 47 + 5963231 ---TAAATGTTGAAATTAAAAAA---------AACACTTGTCAGATGGTTGCATACACA---- i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5112585 45 - 6317780 ---TAAATGCTGAAATAAAGAA----------AACAC-TGGCAGATGGTCACATATACA---- i proCoq1.NW_012136747v1 I 2 I 297 s otoGar3.GL873526 36319330 40 - 42659167 ---TAAATGCTGTAAT-----A----------AACAA-TGGCAGATGGTTATATACACA---- i otoGar3.GL873526 C 0 I 2 s canFam3.chr10 46128440 34 - 69331447 ---TCTATGTTGAAATAAAGAA----------AACAC-TGGCAGATGG--------------- i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 110697 54 + 1056298 TATTCTATGTTGAAATGAAGAATT--------AACAC-CAGCAGATGGTCACATacacacaca i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e micMur3.chr7 5749167 45 + 108171978 I a score=155932.000000 s hg38.chr22_GL383582v2_alt 116444 13 + 162811 TATGCACATCAAA s panTro5.chr22 28896376 13 + 37823149 TATGCACATCAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170945 13 + 50109623 TATGCACATCAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193786 13 + 4464012 TATGCACATCAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689534 13 - 115148730 TATGCACATCAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305723 13 + 92844088 TATGCACATCAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652088 13 - 96509753 TATGCACATCAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148979 13 - 13098629 TATGCACATCAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108847 13 - 4483953 TATGCACATCAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739163 13 + 33263144 TATGCACATCAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020166 13 - 14338769 TATGCACATCAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958414 13 + 1946073 TATGCACATCAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985096 13 - 2117846 TATGCACATCAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896157 13 - 16357246 TATGAACATCAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1381791 13 - 1807191 TATGCACATCAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 59952 13 + 5963231 TATGCACATCAAA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36319372 8 - 42659167 TA-----ATCAAA i otoGar3.GL873526 I 2 C 0 s dasNov3.JH570235 110751 13 + 1056298 cacacacatcaac i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e canFam3.chr10 46128474 0 - 69331447 C e proCoq1.NW_012136747v1 5112630 297 - 6317780 I e micMur3.chr7 5749167 45 + 108171978 I a score=395978.000000 s hg38.chr22_GL383582v2_alt 116457 41 + 162811 -----AAGCAA-----TAAACAggctgggcgcagtgac---------------ccacacctgtaat s panTro5.chr22 28896389 41 + 37823149 -----AAGCAA-----TAAACAggctgggcgcagtgac---------------ccacacctgtaat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170958 41 + 50109623 -----AAGCAA-----TAAACAggctgggcgcagtgac---------------ccacacctgtaat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193799 41 + 4464012 -----AAGCAA-----TAAACAggctgggcgcagtgac---------------ccacacctgtaat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689547 41 - 115148730 -----AAGCAA-----TAAACAggctgggcgcagtgac---------------ccacacctgtaat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305736 41 + 92844088 -----AAGCAA-----TAAAAAggctgggcgcagtgac---------------ccacacctataat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652101 41 - 96509753 -----AAGCAA-----TAAAAAggctgggcacagtgac---------------ccacacctataat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7148992 41 - 13098629 -----AAGCAA-----TAAAAAggctgggcgcagtgac---------------ccacacctataat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108860 41 - 4483953 -----AAGCAA-----TAAAAAggctgggcgcagtgac---------------ccacacctgtaat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739176 41 + 33263144 -----AAGCAA-----TAAAAAggctgggcacagtgac---------------ccacacctgtaat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020179 41 - 14338769 -----AAGCAA-----TAAAAAggctgggcgcagtgac---------------ccacacctgtaat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958427 41 + 1946073 -----AAGCAA-----TAAAAAggctgggcgcagtgac---------------ccacacctgtaat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985109 41 - 2117846 -----ACGTGA-----TAAATAggctgggcgcagtgac---------------tcacacctataat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896170 41 - 16357246 -----AAGTGG-----TAAATAggccaggtgcagtgac---------------tcacacctgtaat i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1381804 41 - 1807191 -----AAGTGG-----TAAACAggctgggtgcagtgac---------------tcacacctgtaat i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 59965 41 + 5963231 -----AAGTGA-----TAAATAggccgggtgcagtgac---------------tcacacctataat i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46128474 21 - 69331447 ------------------------------GCAGGGAC---------------ACAGACCTAAAAT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 110764 66 + 1056298 aaataaaacaaacagggaaacagatttggcccagtggttagggcgtccgtctaccacatgggaggt i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36319380 0 - 42659167 C e proCoq1.NW_012136747v1 5112630 297 - 6317780 I e micMur3.chr7 5749167 45 + 108171978 I a score=1029336.000000 s hg38.chr22_GL383582v2_alt 116498 105 + 162811 --------------------cccaacactc-taggaggtcaaggcagatggatgat-ctgaggt----caggagttccagaccagcctggccaacatggtgaaaccccACAACAAAGTGAGATTCTGTCTC s panTro5.chr22 28896430 105 + 37823149 --------------------cccaacactc-taggaggtcaaggcagatggatgat-ctgaggt----caggagttccagaccagcctggccaacatggtgaaaccccACAACAAAGTGAGATTCTGTCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41170999 105 + 50109623 --------------------cccaacactc-taggaggtcaaggcagatggatgat-ctgaggt----caggagttccagaccagcctggccaacatggtgaaaccccACAACAAAGTGAGATTCTGTCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193840 105 + 4464012 --------------------cccagcactc-tgggaggtcaaggcagatggatgat-ctgaggt----caggagttccagaccagcctggccaacatggtgaaaccccACAACAAAGTGAGATTCTGTCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689588 105 - 115148730 --------------------cccaacactc-tgggaggtcaaggcaggtggatgat-ctgaggt----caggagttccagaccagcctggccaacatagtgaaaccGCACAACAAAGTGAGATTCTGTCTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305777 105 + 92844088 --------------------cccaacactt-taggaggtcaaggcgggtggatgat-ctgaggt----caggagtttcagaccagcctggccaacacggtgaaactccgAAACAAAGTAAGATTCTGTCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652142 106 - 96509753 --------------------cccaacacttgtaggaggtcaaggcgggtggatgat-ctgaggt----caggagtttcagaccagcctggccaacacggtgaaactccgAAACAAAGTAAGATTCTGTCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7149033 105 - 13098629 --------------------cccaacactt-taggaggtcaaggcgggtggatgat-ctgaggt----caggagtttcagaccagcctggccaacacggtgaaactccgAAACAAAGTGAGATTCTGTCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4108901 105 - 4483953 --------------------cccaacactt-taggaggtaaaggcgggtggatgat-ctgaggt----caggagtttcagaccagcctggccaacacggtgaaactccgCAACAAAGTGAGATTCTGTCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739217 105 + 33263144 --------------------cccaacactt-taggaggtcaaggcgggtggatgat-ctgaggt----caggagtttcagaccagcctggccaacatggtgaaactccgCAACAAAGTGAGATTCTGTCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020220 105 - 14338769 --------------------cccaacactt-taggaggtaaaggcgggtggatgat-ctgaggt----caggagtttcagaccagcctggccaacacggtgaaactccgCAACAAAGTGAGATTCTGTCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958468 105 + 1946073 --------------------cacaacactt-tgggaggtcaaggcggatggatgat-ctgaggt----cagcagtttcagaccaccctggccaacatggtgaaactccgCAACAAAGTGAGATTCTGTCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985150 105 - 2117846 --------------------cccaacactt-tgggaggtaaaggctgatggatgat-ctgaggt----caggagctccagaccagcctggccaacatggtgaaaccccACAACAAAGCTAGATTTTGTCTC i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8896211 105 - 16357246 --------------------cccaacactt-taggaggtaaaggctgatggatgat-ctgaggt----caggagttccagaccagcctggccaacatggtgaaaccccACCACAAAGCAAGATTCTGTCTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1381845 105 - 1807191 --------------------cccaacactt-tgggaggtaaagactgatggatgat-ccgaggt----caggagttccagatcagcctggccaacatggtgaaaccccACAACAAAGCTAGATTCTGTCTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60006 105 + 5963231 --------------------cccaacactt-tgggaggtaaaggctgatggatgat-ctgaggt----caggagttccagaccagcctggccaacatggtgaaaccccACCACAAAGCTAGATTCTGTCTC i aotNan1.NW_018512383v1 C 0 C 0 s dasNov3.JH570235 110830 127 + 1056298 ccgcggttcaggccctgggcctcctcgacc-tgtgtggggctggcccatgcacagtgctgatgtgcgcaaggagtgccgtgccacgcagggtgtcccAGGGGAGAGaaataaataaataaatctttaa--- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e canFam3.chr10 46128495 0 - 69331447 C e otoGar3.GL873526 36319380 0 - 42659167 C e proCoq1.NW_012136747v1 5112630 297 - 6317780 I e micMur3.chr7 5749167 45 + 108171978 I a score=105113.000000 s hg38.chr22_GL383582v2_alt 116603 14 + 162811 AAAAAACA---AACAAC s panTro5.chr22 28896535 14 + 37823149 AAAAAACA---AACAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171104 14 + 50109623 AAAAAACA---AACAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193945 17 + 4464012 AAAAAACAAACAACAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689693 14 - 115148730 AAAAAACA---AACAAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305882 17 + 92844088 AAAACACAAACAACAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652248 17 - 96509753 AAAACACAAACAACAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7149138 17 - 13098629 AAAACACAAACAACAAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4109006 17 - 4483953 AAAACACAAACAACAAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739322 17 + 33263144 AAAACACAAACAACGAC i chlSab2.chr19 C 0 I 1 s manLeu1.NW_012102031v1 14020325 17 - 14338769 AAAACACAAACAACAAC i manLeu1.NW_012102031v1 C 0 I 1 s colAng1.NW_012115588v1 958573 17 + 1946073 AAAACACAAACAACAAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985256 13 - 2117846 AAAAAAT----AACAAA i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8896316 13 - 16357246 AAAAAAT----AACAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1381950 13 - 1807191 AAAAAAT----AACAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60111 13 + 5963231 AAAAAAT----AACAAA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36319380 12 - 42659167 ACAAAACA---AACA-- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46128495 14 - 69331447 AACAAATA---AACAAA i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 110957 14 + 1056298 aaaaaaca---aacaaa i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e proCoq1.NW_012136747v1 5112630 297 - 6317780 I e micMur3.chr7 5749167 45 + 108171978 I a score=601729.000000 s hg38.chr22_GL383582v2_alt 116617 47 + 162811 -------AAAAAACCCACCAAATACT-GTGACTTTCCAAGGAAAGTTGGGAAGCA s panTro5.chr22 28896549 47 + 37823149 -------AAAAAACCCACCAAATACT-GTGACTTTCCAAGGAAAGTTGGGAAGCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171118 47 + 50109623 -------AAAAAACCCACCAAATACT-GTGACTTTCCAAGGAAAGTTGGGAAGCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3193962 47 + 4464012 -------AAAAAACCCACCAAATACT-GTGACTTTCCAAGGAAAGCTGGGAAGCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689707 47 - 115148730 -------AAAAAACCCACCAAATACT-GTGACTTTCCAAGGAAAGTTGGGAAGCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305899 47 + 92844088 -------AAAAAACCCACCAAATACT-GTGACTTTCCAAGGAAAGTTGGGAAGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652265 47 - 96509753 -------AAAAAACCCACCAAATACT-GTGACTTTCCAAGGAAAGTTGGGAAGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7149155 47 - 13098629 -------AAAAAACCCACCAAATACT-GTGACTTTCCAAGGAAAGTTGGGAAGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4109023 47 - 4483953 -------AAAAAACCCACCAAATACT-GTGACTTTCCAAGGAAAGCTGGGAAGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739340 47 + 33263144 -------AAAAAACCACCAAAATACT-ATGACTTTTCAAGGAAAGTTGGGAAGCA i chlSab2.chr19 I 1 C 0 s manLeu1.NW_012102031v1 14020343 47 - 14338769 -------AAAAAACCCACCAAATACT-GTGACTTTCCAAGGAAAGCTGGGAAGCA i manLeu1.NW_012102031v1 I 1 C 0 s colAng1.NW_012115588v1 958590 47 + 1946073 -------AAAAAACCCACCAAATATT-GTGACTTTCCAAGGAAAGCTGGGAAGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985269 47 - 2117846 -------AAACACCCCACCAAATACT-GTGACTTTCCGAGGAAAGTTGGGAAGCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896329 47 - 16357246 -------AAACACCCCATCAAATACT-GTGACTTTCTGAGGAAAGTTGGGAAGCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1381963 47 - 1807191 -------AAACATCCCACCAAATACT-GTGACTTTCTGAGGAAAGCTGGGAAACA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60124 47 + 5963231 -------AAACACCCTACCAAATGCT-GTGACTTTCTGAGGAAAGTTGGGAAGCA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5749212 47 + 108171978 -------AAAAAACCCACTAAATACT-GTAACTTTCAGAGGAAAGTTGGGAAGCA i micMur3.chr7 I 45 I 2653 s otoGar3.GL873526 36319392 46 - 42659167 -------AACAAAACTGCCAAATACC-GTAACTTTCAAAGAAAAA-TGGGAAGCA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46128512 26 - 69331447 -------AAACAAACCACCAAATA----------------------TGGCAGGCA i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 110971 55 + 1056298 caaaacaaacagacccacaaaATACTCTTAAGTTTCAGAGGAAAATTGGCAAACC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e proCoq1.NW_012136747v1 5112630 297 - 6317780 I a score=720643.000000 s hg38.chr22_GL383582v2_alt 116664 76 + 162811 AGAACTCAACTTTGACAAGA-GGATGATTAACGGATTATTTTGAGCGCTCAAAT------TTGAC----TAAAGAAT-TTTGTACTTG s panTro5.chr22 28896596 76 + 37823149 AGAACTCAACTTTGACAAGA-GGATGATTAACGGATTATTTTGAGCGCTCAAAT------TTGAC----TAAAGAAT-TTTGTACTTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171165 76 + 50109623 AGAACTCAACTTTGACAAGA-GGATGATTAACGGATTATTTTGAGCGCTCAAAT------TTGAC----TAAAGAAT-TTTGTACTTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3194009 76 + 4464012 AGAACTCAACTTTGACAAGA-GGATGATTAACGGATTATTTTGAGCGCTCAAAT------TTGAC----TAAAGAAT-TTTGTACTTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689754 76 - 115148730 AGAACTCAACTTTGGCAAGA-GGATGATTAACGGATTATTTTGAGTGCTCAAAT------TTGAC----TAAAGAAT-TTTGTACTTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84305946 76 + 92844088 AGAACTCAACTTTGGCAAGA-GGACGATTAACGGATTATTTTGAGGGCTCAACT------TTGAC----TAAAGAAT-TTTGTACTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652312 76 - 96509753 AGAACTCAACTTTGGCAAGA-GGATGATTAACGGATTATTTTGAGGGCTCAACT------TTGAC----TAAAGAAT-TTTGTACTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7149202 76 - 13098629 AGAACTCAACTTTGGCAAGA-GGATGATTAACGGATTATTTTGAGGGCTCAACT------TTGAC----TAAAGAAT-TTTGTACTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4109070 77 - 4483953 AGAACTCAACTTTGGCAAGAGGGATGATTAACGGATTATTTTGAGGGCTCAATT------TTGAC----TAAAGAAT-TTTGTACTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739387 76 + 33263144 AGAACTCAACTTTGGCAAGA-GGATGATTAACGGATTATTCTGAGGGCTCAACT------TTGAC----TAAAGAAT-TTTGTACTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020390 76 - 14338769 AGAACTCAACTTTGGCAAGA-GGATGATTAACGGATTATTTTGAGGGCTCAACT------TTGAC----TAAAGAAT-TTTGTACTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958637 76 + 1946073 AGAACTCAACTTTGGCAAGA-GGATGACTAACGGATTATTTTGAGGGCTTAACT------TTGAC----TAAAGAAT-TTTGTACTTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985316 60 - 2117846 AGTA-----------------AGACAATTAATGTATTGTTTTGAGTGCTCAGAT------ATGAC----TACAGAAT-TTTGTACTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896376 60 - 16357246 AGTA-----------------AGACAATTAATGTATTGTTTTGAGCGCTCAAAT------ATAAC----TAAAGAAT-TTTGTACTTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1382010 60 - 1807191 AGTA-----------------AGACAATTAACGTATTGTATTGAGTGCTCAAAT------ATGAC----TAAAGAAT-TTTGCACTTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60171 60 + 5963231 AGTA-----------------AGACAATTAATGTATTGTTTTGAGCGCTCAAAT------ATAAC----TAAAGAAT-TTTGTACTTT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36319438 80 - 42659167 GGCAATCAATTTTGGCAAGA-TGATGATTACTGGATTGTAATGAGTGCTCAAAT------TAAACTATGTAAAGAAT-TTTGTACTTC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46128538 76 - 69331447 GGCCACCAACTGGAGCAAGA-CGACGACTGACAGGTTATACAGAATACTCAGAA------TTGAC----TAAAGAAT-TTTGTACTTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 111026 78 + 1056298 GGACATCAACTTGGGGAAGA-TGATGA-TAATGGACCACTATG----CTCAAATTTTTGATTATT----TAAAGATTATTTCTATTTT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e proCoq1.NW_012136747v1 5112630 297 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=629889.000000 s hg38.chr22_GL383582v2_alt 116740 48 + 162811 AGGGTCTTAAATGTTACATCCTCCT-------AGGATCT--TTGCATT-------TTAAAATGT s panTro5.chr22 28896672 48 + 37823149 AGGGTCTTAAATGTTACATCCTCCT-------AGGATCT--TTGCATT-------TTAAAATGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171241 48 + 50109623 AGGGTCTTAAATGTTACATCCTCCT-------AGGATCT--TTGCATT-------TTAAAATGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3194085 48 + 4464012 AGGGTCTTAAATGTTACATCCTCCT-------AGGATCT--TTGCATT-------TTAAAATGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689830 48 - 115148730 AGGGTCTTATATGTTACATCCTCCC-------AGGATCT--TTGCATT-------TTAAAATGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84306022 48 + 92844088 AGGGTCTTAAATATTACACCCTTCT-------AGGATCT--TTGCATT-------TTAAAATGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652388 48 - 96509753 AGGGTCTTAAATATTACACCCTTCT-------AGGATCT--TTGCATT-------TTAAAATGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7149278 48 - 13098629 AGGGTCTTAAATATTACACCCTTCT-------AGGATCT--TTGCATT-------TTAAAATGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4109147 48 - 4483953 AGGGTCTTAAATATTACACCCTCCT-------AGGATCT--TTGCATT-------TTAAAATGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739463 48 + 33263144 AGGGTCTTAAATATTACACCCTCCT-------AGGATCT--TTGCATT-------TTAAAATGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020466 48 - 14338769 AGGGTCTTAAATATTACACCCTCCT-------AGGATCT--TTGCATT-------TTAAAATGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958713 48 + 1946073 AGGGTCTTAAATGTTACACCCTCCT-------AGGATCT--TTGCATT-------TTAAAATGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985376 48 - 2117846 AGGGTCTTAAATGTTACATCCTTCT-------AGGATTT--TGGCATT-------TTAAAATGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896436 48 - 16357246 AGGGTCTTAAATGTTACATCCTTCT-------AGGATTT--TGGCACT-------TTAAAATGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1382070 48 - 1807191 AGGGTCTTAAATGTTACATCCTTCT-------AGGATTT--TGGCATT-------TTTAAATGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60231 48 + 5963231 AAGGTCTTAAATGTTACATCCTTCT-------AGGATTT--TGGCATT-------TAAAAATGT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5112927 48 - 6317780 AGGGGCTTCAATGTTATATCCCTCT-------AGGACTT--TTGCATT-------TTAAAATGT i proCoq1.NW_012136747v1 I 297 I 334 s otoGar3.GL873526 36319518 64 - 42659167 AGGGTCTtttgtttattgtttcttttaaagacagggcctcactgcgttgaccaggcctgagtgt i otoGar3.GL873526 C 0 I 18 s canFam3.chr10 46128614 48 - 69331447 AGGGTCTTAAATCTTATGTCCCTTT-------AAGACTT--TCACATT-------GTAAAATGT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 111104 47 + 1056298 AGGGTCTTAAATGTTATGTCTCTTT-------AGGACCT--TTGCATT-------TTAAAA-GT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e micMur3.chr7 5749259 2653 + 108171978 I a score=500017.000000 s hg38.chr22_GL383582v2_alt 116788 42 + 162811 CATTGTG--TATAAACTTCTTAGGGGAAGTGAATCTTCTACCTC s panTro5.chr22 28896720 42 + 37823149 CATTGCG--TATAAACTTCTTAGGGGAAGTAAATCTTCTACCTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171289 42 + 50109623 CATTGCG--TATAAACTTCTTAGGGGAAGTAAATCTTCTACCTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3194133 42 + 4464012 CATTGCG--TATAAACTTCTTAGGGGAAGTAAATCTTCTACCTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689878 39 - 115148730 CATTGCA--TATAAACTTCTTAGGGGAAGTAAA---TCTACCTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84306070 42 + 92844088 CATTGCG--TATAAACTTCTTAGGGGAAGTAAATCATCTACCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652436 42 - 96509753 CATTGCG--TATAAACTTCTTAGGGGAAGTAAATCATCTACCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7149326 42 - 13098629 CATTGCG--TATAAACTTCTTAGGGGAAGTAAATCATCTACCTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4109195 42 - 4483953 CATTGCG--TATAAACTTCTTAGGGGAAGTAAATCTTCTACCTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739511 42 + 33263144 CATTGCG--TATAAACTTCTTAGGGGAAGTAAATCTTCTACCTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020514 42 - 14338769 CATTGCG--TATAAACTTCTTAGGGGAAGTAAATCTTCTACCTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958761 42 + 1946073 CATTGCA--TATAAACTTCTTAGGGGAAGTAAATCTTCTACCTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985424 39 - 2117846 CACTGCA--TATAAACTTCTT---AGAAGTAAATCTTCTACCTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896484 42 - 16357246 CACTGCA--TCTAAACTTCTTAGGAGAAGTAAATCTTCTACCTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1382118 42 - 1807191 CACTGCA--TATAAACTTCTTAGGAGAAGTAAATCTTCTACCTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60279 42 + 5963231 CACTGCA--TATAAACTTCTTAGAAGAAGTAAATCTTCTACCTC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5113309 42 - 6317780 CATTGTG--TTTAAATTTCTTAGGGCAAGTAAATCGTCTATTTC i proCoq1.NW_012136747v1 I 334 C 0 s otoGar3.GL873526 36319600 44 - 42659167 cattttaaccttcaactcctgggctcaagtgacccttctgcctc i otoGar3.GL873526 I 18 I 173 s canFam3.chr10 46128662 28 - 69331447 CACCATG--TCTAA-----------GAAGCCAA---TCTACTTC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 111151 42 + 1056298 CTCTATG--ACTAAACCTCTTAGAGGAAGTGAAATTTCTTATTC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e micMur3.chr7 5749259 2653 + 108171978 I a score=145884.000000 s hg38.chr22_GL383582v2_alt 116830 14 + 162811 AAACTTGGAGTTTC s panTro5.chr22 28896762 14 + 37823149 AAACTTGGAGTTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171331 14 + 50109623 AAACTTGGAGTTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3194175 14 + 4464012 AAACTTGGAGTTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689917 14 - 115148730 ACACTTGGAGTTTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84306112 14 + 92844088 AAACTTGGAGTTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652478 14 - 96509753 AAACTTGGAGTTTC i macFas5.chr10 C 0 I 294 s macNem1.NW_012012688v1 7149368 14 - 13098629 AAACTTGGAGTTTC i macNem1.NW_012012688v1 C 0 I 19 s cerAty1.NW_011999588v1 4109237 14 - 4483953 AACCTTGGAGTTTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739553 14 + 33263144 AAACTTGGAGTTTC i chlSab2.chr19 C 0 I 19 s manLeu1.NW_012102031v1 14020556 14 - 14338769 AAACTTGGAGTTTC i manLeu1.NW_012102031v1 C 0 I 19 s colAng1.NW_012115588v1 958803 14 + 1946073 AAACTTGGAGTTTC i colAng1.NW_012115588v1 C 0 I 19 s calJac3.chrUn_GL286373 1985463 14 - 2117846 AAACTTGGAGTTAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896526 14 - 16357246 AGACTTGGAGTTAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1382160 14 - 1807191 AAACTTGGAGTTAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60321 14 + 5963231 AAACTTGGAGTTAA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5113351 14 - 6317780 AAACTTGAGGTTTC i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46128690 10 - 69331447 AAACCTGGGG---- i canFam3.chr10 C 0 I 4 s dasNov3.JH570235 111193 11 + 1056298 ---CATATAGTATA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36319644 173 - 42659167 I e micMur3.chr7 5749259 2653 + 108171978 I a score=15658.000000 s hg38.chr22_GL383582v2_alt 116844 12 + 162811 ACCGTGATGT--------TA s panTro5.chr22 28896776 12 + 37823149 ACCGTGATGT--------TA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171345 12 + 50109623 ACCGTGATGT--------TA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3194189 12 + 4464012 ACAGTGATGT--------TA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689931 12 - 115148730 ACAGTGATGT--------TA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84306126 12 + 92844088 ACAGTGACGTTA-------- i rheMac8.chr10 C 0 I 296 s macFas5.chr10 87652786 10 - 96509753 ACAGTGACGT---------- i macFas5.chr10 I 294 C 0 s macNem1.NW_012012688v1 7149401 10 - 13098629 ACAGTGACGT---------- i macNem1.NW_012012688v1 I 19 C 0 s cerAty1.NW_011999588v1 4109251 12 - 4483953 ACAGTGACGT--TA------ i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739586 12 + 33263144 ACAGTGACGT----TA---- i chlSab2.chr19 I 19 C 0 s manLeu1.NW_012102031v1 14020589 12 - 14338769 ACAGTGACGT----TA---- i manLeu1.NW_012102031v1 I 19 C 0 s colAng1.NW_012115588v1 958836 12 + 1946073 ACAGTGATGT------TA-- i colAng1.NW_012115588v1 I 19 C 0 s calJac3.chrUn_GL286373 1985477 12 - 2117846 ACAGTGATGT--------TA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896540 12 - 16357246 ACAGTGATGT--------TA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1382174 12 - 1807191 ACGGTGACGT--------AA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60335 12 + 5963231 ACAATGACGT--------TA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5113365 12 - 6317780 AGAGTGATGT--------TA i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46128704 7 - 69331447 GGAGTGA------------- i canFam3.chr10 I 4 C 0 s dasNov3.JH570235 111204 2 + 1056298 ----TA-------------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36319644 173 - 42659167 I e micMur3.chr7 5749259 2653 + 108171978 I a score=10920.000000 s hg38.chr22_GL383582v2_alt 116856 1 + 162811 A s panTro5.chr22 28896788 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171357 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3194201 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689943 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s cerAty1.NW_011999588v1 4109263 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 I 19 s chlSab2.chr19 24739598 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020601 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958848 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985489 1 - 2117846 A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896552 1 - 16357246 A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1382186 1 - 1807191 A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60347 1 + 5963231 A i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5113377 1 - 6317780 A i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46128711 1 - 69331447 A i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 111206 1 + 1056298 A i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36319644 173 - 42659167 I e micMur3.chr7 5749259 2653 + 108171978 I e macNem1.NW_012012688v1 7149411 0 - 13098629 C e macFas5.chr10 87652796 0 - 96509753 C e rheMac8.chr10 84306138 296 + 92844088 I a score=26730.000000 s hg38.chr22_GL383582v2_alt 116857 2 + 162811 TA s panTro5.chr22 28896789 2 + 37823149 TA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171358 2 + 50109623 TA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3194202 2 + 4464012 TA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689944 2 - 115148730 TA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84306434 2 + 92844088 TA i rheMac8.chr10 I 296 C 0 s macFas5.chr10 87652796 2 - 96509753 TA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7149411 2 - 13098629 TA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4109283 2 - 4483953 TA i cerAty1.NW_011999588v1 I 19 C 0 s chlSab2.chr19 24739599 2 + 33263144 TA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020602 2 - 14338769 TA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958849 2 + 1946073 TA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985490 2 - 2117846 TA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896553 2 - 16357246 TA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1382187 2 - 1807191 TA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60348 2 + 5963231 TA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5113378 2 - 6317780 TA i proCoq1.NW_012136747v1 C 0 I 1001 s canFam3.chr10 46128712 2 - 69331447 CG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 111207 2 + 1056298 TA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36319644 173 - 42659167 I e micMur3.chr7 5749259 2653 + 108171978 I a score=735011.000000 s hg38.chr22_GL383582v2_alt 116859 88 + 162811 ATGG-AGACAGGG---------AAGGAGGCACAAAGAAAAGACCGTAATTGGGAGA-TAGGGGACATGATAAGAG--TAAAGGGCAAGCTCCTTGCATGAC s panTro5.chr22 28896791 88 + 37823149 ATGG-AGACAGGG---------AAGGAGGCACAAAGAAAAGACCATAATTGGGAGA-TAGGGGACATGATAAGAG--GAAAGGGCAAGCTCCCTGCATGAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171360 88 + 50109623 ATGG-AGACAGGG---------AAGGAGGCACAAAGAAAAGACCATAATTGGGAGA-TAGGGGACATGATAAGAG--GAAAGGGCAAGCTCCCTGCATGAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3194204 88 + 4464012 ATGG-AGAGAGGG---------AAGGAGGGAAAAAGAAAAGACCATAATTGGGAGA-TAGGGGACATGATAAGAG--GAAAGGGCAAGCTCCTTGCATGAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106689946 89 - 115148730 ATGG-AGAGAGGG---------AAGGAGGGAAAAAGAAAAGACCATAATTGGG-GA-TAGTGGACATGATAAGAGTTGAAAGGGCAAGCTCCTTGCATGAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84306436 86 + 92844088 ATGG-AGAGAGGG---------AAGGAGGGAAAAATAAAAGACCATAATTAGGGGATTAGGGGAC---ATAAGAA--GAAAGGGCAAGCTCCTTGCGTGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652798 86 - 96509753 ATGG-AGAGAGGG---------AAGGAGGGAAAAATAAAAGACCATAATTAGGGGATTAGGGGAC---ATAAGAA--GAAAGGGCAAGCTCCTTGCGTGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7149413 86 - 13098629 ATGG-AGAGAGGG---------AAGGAGGGAAAAATAAAAGACCATAATTAGGGGATTAGGGGAC---ATAAGAA--GAAAGGGCAAGCTCCTTGCGTGAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4109285 86 - 4483953 ATGG-AGAGAGGG---------AAGGAGGGAAAAATAAAAGACCATAATTGGGGGATTAGGGGAC---ATAAGAA--GAAAGGACAAGCTCCTTGCGTGAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739601 86 + 33263144 ATGG-AGAGAGGG---------AAGGAGGGAAAAATAAAAGACCATAATTGGGGGATTAGGGGAC---ATAAGAA--GAAAGGGCAAGTTCCTTGCGTGAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020604 86 - 14338769 ATGG-AGAGAGGG---------ACGGAGGGAAAAATAAAAGACCATAATTGGGGGATTAGGGGAC---ATAAGAA--GAAAGGGCAAGCTCCTTGCGTGAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958851 86 + 1946073 ATGG-AGAGAGGG---------AAGGAGGGAAAAATAAAAGACTGTAATTGGGGGATTAGGGGAC---ATAAGAG--GAAAGGGCAAGCTCCTTGCGTGAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985492 78 - 2117846 ATGG-AGAGAGAG---------AAGGAGGGAAAAAGAAAAGACCATAATTTTGGGGGTTGAGGGCATG-------------GGGCAAGCTCCTTGCGTGAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896555 84 - 16357246 ATGG-AGAGAGAG---------AACGAGGGA-----AAAAGATCATAATTTGGGGGGTTGAGGGCATGCTAAGAG--GAAAGGGCAAGCTCCTTGCGTGAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1382189 89 - 1807191 ATGG-AGACAGAG---------GAGGAGGGAAAAAGAAAAGACCATAATTTTGGGGGTTGAGGGCATGCTAAGAG--GAAAGGGCAAGCTCCTTGCGTGAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60350 89 + 5963231 ATGG-AGAGAGAG---------AAGGAGGGAAAAAGAAAAGACCGTAATTTTGGGGGTTGAGGGCATGCTAAGAG--GAAAGGGCAAGCTCCTTGCGTGAC i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46128714 80 - 69331447 -TGGTGGATAGGA---------AAGGAGGTAAAA---------CAAAACTCACGTGGTGGGGGAGGCTCTCAGAG--GGAAAGCCAAGCTCCTTGTGTGAC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 111209 80 + 1056298 ATGG-GGCTTGGGGGTGATGAAGAGGAGGGAGAAAAAA------------GGTGGTTTATGGGGT---CTAAGT---GCAAGTACAAGGTCATTGTGTG-- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36319644 173 - 42659167 I e proCoq1.NW_012136747v1 5113380 1001 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=949722.000000 s hg38.chr22_GL383582v2_alt 116947 96 + 162811 TGAATTAAAATGTTCTAATTTC----AAATATATAT------TTCACATT------CAATA-------TAAT--------------TTTT----------------------------------ACTATA----GTCTATGGGC---ACT-------------------TC-TTTTT-------GCCAGAAG---GTTATAAAT s panTro5.chr22 28896879 97 + 37823149 TGAAttaaaatgttctaatttc----aaatatatat------ttcacatt------caaTA-------TAAT--------------TTTT----------------------------------ACTATA----GTCTATGGGC---ACT-------------------TCCTTTTT-------GCCAGAAG---GTTATAAAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171448 97 + 50109623 TGAATTAAAATGTTCTAATTTT----AAATATATAT------TTCACATT------CAATA-------TAAT--------------TTTT----------------------------------ACTATA----GTCTATGGGC---ACT-------------------TCCTTTTT-------GCCAGAAG---GTTATAAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3194292 97 + 4464012 TGAATTAAAATGTTCTAATTTC----AAATATATAT------TTCACATT------CAATA-------TAAT--------------TTTT----------------------------------ACTATA----GTCTATGGGC---ACT-------------------TCCTTTTT-------GCCAGAAG---GTTATAAAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106690035 93 - 115148730 TGAATTAAAATGTTCTAATTTC----AAATATATAT------TTCACATT------CAATA-------TAAT--------------TTTT----------------------------------ACTATA----GTCTATGGGC---AC-----------------------TTTTT-------GCCAGAAG---GTTATAAAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84306522 97 + 92844088 TGAATTAAAATGTTCTAATTTC----AAATATATAT------TTCACATT------CAATA-------TAAT--------------TTTT----------------------------------ACTATA----GTCTAGGGGA---ACC-------------------TCCTTTTT-------GCCAGAAG---GTTAAAAAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652884 97 - 96509753 TGAATTAAAATGTTCTAATTTC----AAATATATAT------TTCACATT------CAATA-------TAAT--------------TTTT----------------------------------ACTATA----GTCTAGGGGA---ACC-------------------TCCTTTTT-------GCCAGAAG---GTTAAAAAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7149499 97 - 13098629 TGAATTAAAATGTTCTAATTTC----AAATATATAT------TTCACATT------CAATA-------TAAT--------------TTTT----------------------------------ACTATA----GTCTAGGGGA---ACC-------------------TCCTTTTT-------GCCAGAAG---GTTAAAAAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4109371 97 - 4483953 TGAATTAAAATGTTCTAATTTC----AAATATATAT------TTCACATT------CAATA-------TAAT--------------TTTT----------------------------------ACTATA----GTCTAGGGGA---ACC-------------------TCCTTTTT-------GCCAGAAG---GTTAAAAAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739687 97 + 33263144 TGAATTAAAATGTTCTAATTTC----AAATATATAT------TTCACATT------CAATA-------TAAT--------------TTTT----------------------------------ACTATA----GTCTAGGGGA---ACC-------------------TCCTTTGT-------GCCAGAAG---GTTAAAAAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020690 97 - 14338769 TGAATTAAAATGTTCTAATTTC----AAATATATAT------TTCACATT------CAATA-------TAAT--------------TTTT----------------------------------ACTATA----GTCTAGGGGA---ACC-------------------TCCTTTTT-------GCCAGAAG---GTTAAAAAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 958937 97 + 1946073 TGAATTAAAATGTTCTAATTTC----AAATATATAT------TTCACATT------CAATA-------TAAT--------------TTTT----------------------------------ACTATA----GTCTAGGGGC---ACT-------------------TCCTTTTT-------GCCAGAAG---GTTAAAAAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985570 102 - 2117846 TGAATTAAAATGTTCTAATTTC-----TATATATAT------TTCACATT------TGATT-------TTTT--------------TTTT----------------------------TTTTTAACTATA----GTCTACGGGC---ACT-------------------TCCTTTTT-------GCCAGACG---GTTATAAAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896639 95 - 16357246 TGAATT-AAATGTTCTAATTTC-----AATATATAT------TTCACGTA------TGATT-------CTTT--------------TTTT----------------------------------AATATA----GTCTACGGGC---ACT-------------------TCCTTTTT-------GCCAGACG---GTTATAAAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1382278 98 - 1807191 TGAATTAAAATGTTCTAATTTC-----AATATATAT------TTCACGTT------CGATT-------TTTT--------------TTTT----------------------------TT----TCTATA----GTCTACGGGC---ACT-------------------TCCTTTTT-------GCCAGACG---GTTATAAAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60439 98 + 5963231 TGAATTAACATGTTCTAATTTC-----AATACATAT------TTCACGTT------CGATT-------TTTT--------------TTTT----------------------------TT----ACTATA----GTCTATGGGC---ACT-------------------TCCTTTTT-------GCCAGACG---GTTATAAAT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36319817 178 - 42659167 TTTATTATAGTCTTCTTCTTTGCTAAGATTATATAT------TTTAGGAA------TAATA-------CAATGACAAAATGCAGTGTTTTAGGGGGAGGTGTGTGAGGAAGGGAAAGGTT----AATATGACGTATCCAAGAAC---ACCATGATCCTGACTGACAAAATCCTTATTAACTATGACCGGAAGTCATTTATATAT i otoGar3.GL873526 I 173 I 39 s canFam3.chr10 46128794 100 - 69331447 TGAATTAGAATGTTCTAATCTA----AAAAATATAT--AAGCTTCATATG------AATTA-------CATT--------------TCTT----------------------------------ACTAGA----GTTTACAGTTTTGACT-------------------TCCTTTTT-------ATCA-------GTTATAAAT i canFam3.chr10 C 0 I 136 s dasNov3.JH570235 111289 118 + 1056298 TTAATTAGGATATTCTAATATC----aaatatatatataaatttcacattaataaataataaacatatttaC--------------TTTG----------------------------------ACTAGA----ATTTATGAGT---ACT-------------------TCCTTTTT-------GCCAGACACT-GTTATAAAT i dasNov3.JH570235 C 0 I 22 e mm10.chr15 82848423 2899 + 104043685 I e proCoq1.NW_012136747v1 5113380 1001 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=287257.000000 s hg38.chr22_GL383582v2_alt 117043 35 + 162811 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ACTAAACATACAGTTGTACATC s panTro5.chr22 28896976 35 + 37823149 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ACTAAACATACAGTTGTACATC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171545 35 + 50109623 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ACTAAACATACAGTTGTACATC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3194389 35 + 4464012 AACATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ACTAAACATACAGTTGTACATC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106690128 35 - 115148730 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ACTAAACATACAGTTGTACATC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84306619 35 + 92844088 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ATGAAACATACAGTTGTACATC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87652981 35 - 96509753 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ATGAAACATACAGTTGTACATC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7149596 35 - 13098629 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ATGAAACATACAGTTGTACATC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4109468 35 - 4483953 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ACGAAACATACAGTTGTACATC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739784 35 + 33263144 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ACGAAACATACAGTTGTACATC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020787 35 - 14338769 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ACGAAACATACAGTTGTACATC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 959034 35 + 1946073 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ACGAAACATACAGTTGTACATC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985672 35 - 2117846 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ACTAAATATACAGTTGTACATC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896734 35 - 16357246 AACATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ACTAAATAAACAGTTGTACATC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1382376 35 - 1807191 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ACTAAATATACAGTTGTACATC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60537 35 + 5963231 AATATGGTA------------------------------------------------------------------------GACT-----------------------------------------------------------------------------------------ACTAAATATACAGTTGTACATC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36320034 28 - 42659167 AATATAGTA------------------------------------------------------------------------GACC-----------------------------------------------------------------------------------------ACTG-------ATTTATACATC i otoGar3.GL873526 I 39 I 12 s canFam3.chr10 46129030 73 - 69331447 AGTATGata------------------------------------------------------------------------aattaa-------------------------------------ttttaaatata----aataCAAAAA------CTGTGATTAAATAT--CAGACTGAACATACATTTTTCCA-- i canFam3.chr10 I 136 C 0 s dasNov3.JH570235 111429 196 + 1056298 AATATAGTATTTTTAGGGGTGAAGGAATATAGGGTACCCAAGGATACTATCATCTTGATATAATCCTCAAATTTTAACTATGACTGAAAGTCTTTTGCATATTCGTCAGTGACAAATGATAAATTTGTAAACATAAACGAATACAAAAATCTCTcctctgattaaatatggctgactgaacatacatttacatatc i dasNov3.JH570235 I 22 C 0 e mm10.chr15 82848423 2899 + 104043685 I e proCoq1.NW_012136747v1 5113380 1001 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=691791.000000 s hg38.chr22_GL383582v2_alt 117078 53 + 162811 CATCTGATCCCTTCCCACGA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATGA s panTro5.chr22 28897011 53 + 37823149 CATCTGATCCCTTCCCACGA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171580 53 + 50109623 CATCTGATCCCTTCCCACGA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3194424 53 + 4464012 CATCTGATCCCTTCCCACGA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106690163 53 - 115148730 CATCTGATCCCTTCCCACAA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84306654 53 + 92844088 CATTTGATCCCTTCCCACAA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87653016 53 - 96509753 CATTTGATCCCTTCCCACAA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7149631 53 - 13098629 CATTTGATCCCTTCCCACAA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4109503 53 - 4483953 CATTTGATCCCTTCCCACAA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739819 53 + 33263144 CATCTGATCCCTTCCCACAA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020822 53 - 14338769 CATTTGATCCCTTCCCACAA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 959069 53 + 1946073 CACCTGATCCCTTCCCACAA-----------------AA--AAGTGGATAAATTTGCAAGATAAACTCATGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985707 49 - 2117846 ----TGATCCCTTCCCACAA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896769 49 - 16357246 ----TGATCCCTTCCCACAA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1382411 49 - 1807191 ----TGATCCCTTCCCACAA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60572 49 + 5963231 ----TGATCCCTTCCCACAA-----------------AA--AAGTGGATAAACTTGCAAGATAAACTCATAA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5114381 53 - 6317780 CATCTGGTTCCTTCCCACAA-----------------AA--AAAGGGATAAACTTGCAAGacaaactcatga i proCoq1.NW_012136747v1 I 1001 I 3695 s otoGar3.GL873526 36320074 70 - 42659167 CCTCTGCcacacacacacaaacacacacacacacaacac--aAAGAGATAAACTTGCAAGACAAAGTGAGGA i otoGar3.GL873526 I 12 C 0 s canFam3.chr10 46129103 44 - 69331447 CATCTTTTCCCTTCCCACAA-----------------AGATAGAAGGATAAACTTATATGA----------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 111625 50 + 1056298 ----tattcccttcccacaa-----------------aaataaagggacaaacttgcaaggcaaactcaga- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e micMur3.chr7 5749259 2653 + 108171978 I a score=2271587.000000 s hg38.chr22_GL383582v2_alt 117131 235 + 162811 CACCATGAGCAATG----------------------------------------GGAAGCTGGAAACAT----------------------------------GAGAGATGAAG--TGAGTGACAGTGATTCTGTGCACTGCAAGGA---------AGCAGACAGTAATG-----------ATGAGTG----------CAGTGGAGG-AGCCCCCAGAAAGCCAGCCACTTTAGGGCACAGAGCTT-GGGGAG--------GCCTCAGTAAGTGGGGGTGCAACATGGGGCTGAAAAATAGAGCATTAGCCCAAAGTTTCTAAGAGGAGTTAGATCCTTAA-----CCCAGTTCAA----- s panTro5.chr22 28897064 235 + 37823149 CACCATGAGCAATG----------------------------------------GGAAGCTGGAAACAT----------------------------------GAGAGATGAAG--TGAGTGACAGTGATGCTGTGCACTGCAAGGA---------AGCAGACAGTAATG-----------ATGAGTG----------CAGTGGAGG-AGCCCCCAGAAAGCCAGCCACTTTAGGGCACAGAGCTT-GGGGGG--------GcctcagtaagtgggggtgcaacatggggctgaaaaatagagcattagcccaaagtttctaagaggagttagatccttaA-----CCCAGTTCAA----- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171633 235 + 50109623 CACCATGAGCAATG----------------------------------------GGAAGCTGGAAACAT----------------------------------GAGAGATGAAG--TGAGTGACAGTGATGCTGTGCACTGCAAGGA---------AGCAGACAGTAATG-----------ATGAGTG----------CAGTGGAGG-AGCCCCCAGAAAGCCAGCCACTTTAGGGCACAGAGCTT-GGGGGG--------GcctcagtaagtgggggtgcaacatggggctgaaaaatagagcattagcccaaagtttctaagaggagttagatccttaA-----CCCAGTTCAA----- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3194477 235 + 4464012 CACCATGAGCAATG----------------------------------------GGAAGCTGGAAACAG----------------------------------GAGAGATGAAG--TGAGTAACAGTGATTCTGTGCACTGCAAGGA---------AGCAGACAGTAATG-----------ATGAGTG----------CAGTGGAGG-AGCCCCCAGAAAGCCAGCCACTTTAGGGCACAGAGCTT-GGGGAG--------Gcctcagtaagtgggggtgcaacatggggctgaaaaatagagcattagcccaaagtttctaagaggagttagatccttaa-----cccagttcaa----- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106690216 235 - 115148730 CAGCATGAGCAATA----------------------------------------GGAAGCTGGAAATAG----------------------------------GAAAGATGAAA--TGAGTAACAGTGATTCTGCGCACTGAAAGGA---------AGCAGACAGTAATG-----------ATGAATG----------CAGTGGAGG-AGCTACTAGAAAGCCAGCCACTTTATggcacagagctt-ggtgag--------gcctcagtaagtgggggtgcagcatggggctgaaaaatacagcattagcccaaagtttctaagaggagttagatccttaa-----cccagttcaa----- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84306707 230 + 92844088 CAGCATGAGCAATG----------------------------------------GGAAACTGGAAATAG----------------------------------GAGAGATGAAG--TGAGTAACAGTAATTCTGTGCACTGAAAGGA---------AGCAGACAGTAATG-----------ATGAGTG----------CAGTGGAGG-AGCCATTAGAAAGCCCGCCACTTTACAGCACAGAGCTT-GGGGAG--------Gcctcagtaagtgggggtgcaacatggggctgaaaaatagagcattagcccaaagtttctaagcggagttagatccttaa----------ttcAA----- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87653069 230 - 96509753 CAGCATGAGCAATG----------------------------------------GGAAACTGGAAATAG----------------------------------GAGAGATGAAG--TGAGTAACAGTAATTCTGTGCACTGAAAGGA---------AGCAGACAGTAATG-----------ATGAGTG----------CAGTGGAGG-AGCCATTAGAAAGCCCGCCACTTTACAGCACAGAGCTT-GGGGAG--------Gcctcagtaagtgggggtgcaacatggggctgaaaaatagagcattagcccaaagtttctaagcggagttagatccttaa----------ttcAA----- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7149684 225 - 13098629 CAGCATGAGCAATG----------------------------------------GGAAACTGGAAATAG------------------------------------GAGATGAAG--TGAGTAACAGTAATTCTGTGCACTGAAAGGA---------AGCAGACAGTAATG-----------ATGA-------------CAGTGGAGG-AGCCATTAGAAAGCCCGCCACTTTACAGCACAGAGCTT-GGGGAG--------Gcctcagtaagtgggggtgcaacatggggctgaaaaatagagcattagcccaaagtttctaagcggagttagatccttaa----------ttcAA----- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4109556 230 - 4483953 CAGCATGAGCAATG----------------------------------------GGAAACTGGAAATAA----------------------------------GAGAGATGAAG--TGAGTAACAGTAATTCTGTGCACTGAAAGGA---------AGCAGACAGTAATG-----------ATGAGTG----------CAGTGGAGG-AGCCATTAGAAAGCCCGCCACTTTACGGCACAGAGCTT-GGGGAG--------acctcagtaagtgggggtgcaacatggggctgaaaaatagagcattagcccaaagtttctaagaggagttagatccttaa----------ttcAA----- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24739872 230 + 33263144 CAGCataagcaatg----------------------------------------ggaaactggaaatag----------------------------------gagagatgaag--taagtaacagtaaTTCTGTGCACCGAAAGGA---------AGCAGACAGTAATG-----------ATGAGTG----------CAGTGGAGG-AGCCATTAGAAAGCCCGCCACTTTATGGCACAGAGCTT-GGGGAG--------Gcctcagtaagtgggggtgcaacatggtgctgaaaaatagagcattagcccaaagtttctaagaggagttagatccttaa----------ttcAA----- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14020875 230 - 14338769 CAGCATGAGCAATG----------------------------------------GGAAACTGGAAATAG----------------------------------GAGAGATGAAG--TGAGTAACAGTAATTCTGTGCACTGAAAGGA---------AGCAGACAGTAATG-----------ATGAGTG----------CAGTGGAGG-AGCCATTAGAAAGCCCGCCACTTTACGGCACAGAGCTT-GGGGAG--------Gcctcagtaagtgggggtgcaacatggggctgaaaaatagagcattagcccaaagtttctaagaggagttagatccttaa----------ttcAA----- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 959122 230 + 1946073 CAGCATAAGCAATG----------------------------------------GGAAATTGGAAATAG----------------------------------GAGAGATGAAG--TGAGTAACAGTGATTCTGTGCACTGAAAGGA---------AGCAGACAGTAATG-----------ATGAGTG----------CAGTGGAGG-AGCCATTAGAAAGCCTGCCACTTTACGGCACAGAGCTT-GGGGAG--------Gccttagtaagtgggggtgcaacatggggctgaaaaatagagcattagcccaaagtttctaagaggagttagatccttaa----------ttcAA----- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985756 236 - 2117846 CAGCACCAGGAATG----------------------------------------GGACATTGGAAATAG----------------------------------GAAAGATGAA----GAGTAACCG--ATTCTGTGCACTGAAAGGA---------AGCAGACAGT-ATG-----------ATGAGTG----------CAGTGGAGG-AGCCACTAGCCAGC--GCCACTTCATggcacagagctt-gggcaggcacagatgcctcaagaagtgggggtgcaatatagggctgaaaaacagagcattaggccagagtttctaagaagagttagatccttaA-----CTCAATCCAA----- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8896818 231 - 16357246 AAGCATCAGAAATG----------------------------------------GGACACTGGAAACAG----------------------------------GAGAGATGAA----GAGTTACAG--ATTCTGTGCACTGAAAGGA---------GGCAGACAGTAATG-----------ATGAGTG----------CAGTGGAGG-AGCCACTAGAAAGCCAGCAACTTTATGGCTCAGAGCTT-GGGGAGGCACAGATGCCTCAAGAAGT-GAGGTGCAACATAGGGCTGAAAAAC--AGCATTAGGCCAGAGTTTCTAAGAAGAGCTAAATCCTT----------AATTCAA----- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1382460 240 - 1807191 CAGCACCAGGAATG----------------------------------------GGACGCTGGAAATAG----------------------------------GAGAGATGAA----GAGTAACAG--ATTCTGTGCACTGAAAGGA---------GGCAGACAGTAATG-----------ATGAGTC----------CAGTGGAGG-AGCCACTAGAAAGCCAGCCACTTTATGGCACAGAGCTTGGGGGGGGCACAGATGCCTCAAGAAGTGAGGGTGCAACATAGGGCAGAAAAACAGAGCATTAGGCCAGAGTTTCTAAGAAGAGTTAGATCCTTAA-----CTCAATTCAA----- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60621 239 + 5963231 CAGCACGAGCAATA----------------------------------------GGACGCTGGAAATAG----------------------------------GAGAGATGAA----GAATAACAG--ATTCTGTGCACTGAAAGGA---------GGCAGACAGTAATG-----------ATGAGTg----------cagtggagg-agtcactagaaagccagccactttatggcacagagctt-ggggaggcacagatgcctcaagaagtgggggtgcaacatagggctgaaaaacagagtattaggccagagtttctaagaagagttagatccttaa-----ctcaattcaa----- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36320144 271 - 42659167 ---CAAGGAGAATGAAACAGGAGATAAACAAGAGACAAGAGGTATTCAAATTCTGAAAGGTAGAAACAG----------------------------------GATGAGCAAAA--GAATTAAGTGCCATTCAGTGGAC--AGAGGA---------CACAG-------TG-----------ATGAACA----------CAGT----C-AGTCACTAGAAAGTCAGTCCCCTTATGGCACATAGTCT-AGGAAGACACCAGTGTCTCAGGAAG-GAGGGTGCAAGATGGGGATGGAAAATGAAACTCCAGCTCAAAGTGTGACAGAAGCCTTAGATCCCTAAGCCTGCCCAGTTAAA----- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46129147 276 - 69331447 GGACACAGACAACG----------------------------------------GGAAA--GGAAacacacacacacacacacacacacgcacacacacacacaACAGATGTCC--CTATTTTCGG--ATGCTGGAAATCAAAAGAGGGTGCACCCAGCAGTCTGTAAGGCAGAGAGAGGAATGAGTG----------CAGTGGAGG-GGCCACAAGAACATCAGCCACTGTGTGGCACAGAGCTG-GGGAAGGCACAGCCAGCTCAA-------------AATGTGGGGCCAGTAACCAGGTCATTAGCTCAAAATT----ATATGAGGTAGATCCTTAA-----CCCAATCCAA----- i canFam3.chr10 C 0 I 61 s dasNov3.JH570235 111675 230 + 1056298 -------ggccatg----------------------------------------aagaacagaagagat----------------------------------aacacacaaaggatgcctaa-----attctggaagctggaaata---------ag-agagacgaaga-----------gtgagtggctcagtagatagtgggggtagccactagaaagccagccactttgtgttgcagagccc-aggaaggtgcaagtttctcagaaagtgggggtg---------------aactggagcattaattcaaagtcc---ataggcattagatccccaA-----CTCAATCTAATTCAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=3657633.000000 s hg38.chr22_GL383582v2_alt 117366 357 + 162811 CCAGG--TAACTGTTCTC---------------ATCCactgaa---------------aacaggcgggagattgtcaaagtccgcgcactgaat-----catgagcccatatccccacccacacaacccta----ccatcctcttctccacttggcttttaggacgctggcagccaagcttgcatctc-tagacag-gaaatctcaagatttttctctggaacaaaa------aaaaaaatg----tttttttt--tcctctgggaaaactcaactcagaaaaaagacccatatgctggctggctgccttattattctacggagaggactacaggctagcaagcctggcccatac----tg-taacagagagcttcaagtcattt---tttaaaacatctctttctctcttaaaaatata s panTro5.chr22 28897299 355 + 37823149 CCAGG--TAACTGTTCTC---------------ATCtactgaa---------------aacaggcgggagattgtcaaagtccgcgcactgaat-----catgagcccatatccccacccacacaacccta----ccatcctcttctccacttggcttttaggacgctggcagccaagcttgcatctc-tagacag-gaaatctcaagatttttctctggaacaaaa------aaaaaa-tg----tttttttt---cctctgggaaaactcaactcagaaaaaagacccatatgctggctggctgccttattattctacggagaggactacaggctagcaagcctggcccatac----tg-taacacagagcttcaagccattt---tttaaaacatctctttctctcttaaaaatata i panTro5.chr22 C 0 C 0 s panPan2.chr22 41171868 355 + 50109623 CCAGG--TAACTGTTCTC---------------ATCtactgaa---------------aacaggcgggagattgtcaaagtccgcgcactgaat-----catgagcccatatccccacccacacaacccta----ccatcctcttctccacttggcttttaggacgctggcagccaagcttgcatctc-tagacag-gaaatctcaagatttttctctggaacaaaa------aaaaaaatg----ttttttt----cctctgggaaaactcaactcagaaaaaagacccatatgctggctggctgccttattattctacggagaggactacaggctagcaagcctggcccatac----tg-taacacagagcttcaagccattt---tttaaaacatctctttctctcttaaaaatata i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3194712 356 + 4464012 ccagg--taactgttcTC---------------ATCtactgaa---------------aacaggcgggagattgtcaaagtccgcgcactgaat-----catgagcccatatccccacccacacaacccta----ccatcctcttctccacttggctcttagaatgctggcagccaagcttgcatctc-tagacag-gaaatctcaagatttttctctggaacaaaa------aaaaaaatg----tttttttt---cctctgggaaaactcaactcagaaaaaagacctatatgctggctggctgccttattattctacggagaggactacaggctagcaagcctggcccatac----tg-taacacagagcttcaagccattt---tttaaaacatctctttctctcttaaaaatata i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106690451 365 - 115148730 ccagg--taactgtcctc---------------ATCtactgaa---------------aacaggcgggagattgtcaaagtccgtgcactgaat-----gatgagcccatatccccacccacacaactcta----ccatccccgtctccacttggcttttaggatgctggcagccaagcttgcatctc-tagacag-gaaatctcaagatttttctccggaacaaaacaaaacaaaaaaatg----tttttttttttcctctgggaaaactcaactcagagaaaagacctatatgctggctggctgccttattattctacggagaggactacagactagcaagcctggcccatac----tg-taacacagagcttcaagccattt---tttaaaacatctctttctctcttaaaaattta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84306937 359 + 92844088 CCAGG--TAACTGTCCTC---------------ATCtactaaa---------------aacaggtgggagactgtcaaagtccacacactgaat-----ggtaagcccatatccccacccacacaacccta-----catccccttctccacttggcttttaggatgctggcagccaggcttgcacctc-tagacag-gaaatctcaagatttttctctggaacagaac-----aaaaaaaaa----attttttttttcctctgggaaaactcaactcagagaaaagacctatatgctggctgcctgccttattattctacggagaggactacaggctagcaagcctggcccatac----tg-taacacagagcttcaagccattt---tttaaaatgtctctttctctcttaaaaatata i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87653299 364 - 96509753 CCAGG--TAACTGTCCTC---------------ATCtactaaa---------------aacaggtgggagactgtcaaagtccacacactgaatggtaaggtaagcccatatccccacccacacaacccta-----catccccttctccacttggcttttaggatgctggcagccaggcttgcacctc-tagacag-gaaatctcaagatttttctctggaacagaac-----aaaaaaaaa----tttttttttttcctctgggaaaactcaactcagagaaaagacctatatgctggctgcctgccttattattctacggagaggactacaggctagcaagtctggcccatac----tg-taacacagagcttcaagccattt---tttaaaatgtctctttctctcttaaaaatata i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7149909 359 - 13098629 CCAGG--TAACTGTCCTC---------------ATCtactaaa---------------aacaggtgggagactgtcaaagtccacacactgaat-----ggtaagcccatatccccacccacacaacccta-----catccccttctccacttggcttttaggatgctggcagccaggcttgcacctc-tagacag-gaaatctcaagatttttctctggaacaaaac-----aaaaaaaaa----tttttttttttcctctgggaaaactcaactcagagaaaagacctatatgctggctgcctgccttattattctacggagaggactacaggctagcaagcctggcccatac----tg-taacacagagcttcaagccattt---tttaaaatgtctctttctctcttaaaaatata i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4109786 353 - 4483953 CCAGG--TAACTGTCCTC---------------ATCtactaaa---------------aacaggtgggagactgtcaaagtccacacactgaat-----ggtaagcccatatccccacccacacaacccta-----catccccttctccacttggcttttaggatgctggcagccaggcttgcacctc-tag--------atctcaagatttttctctggaacaaaaca----aaaaaaaaa----tttttttttttcctctgggaaaactcaactcagagaaaagacctatatgctggctgcctgccttattattctacggagaggactacaggctagcaagcctggcccatac----tg-taacacagaacttcaagccattt---tttaaaatgtctctttctttctttaaaatata i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24740102 352 + 33263144 CCAGG--TAACTGTCCTC---------------ATCtactaaa---------------aacaggtgggagactgtcaaagtccacacactgaat-----gataagcccatatc----cccacacaacccta-----catccccttctccacttggcttttaggatgctggcagccaggcttgcacctc-tagacag-gaaatctcaagatttttctctggAACAAAAC-----AAAAAAAA-------TTTTTTTTTCCTCTGGGAAAACTCAACTCAGAGAAAACACCTATATGCTGGCTGcctgccttattattctacggagaggactacaggctagcaagcctggcccatac----tg-taacacagagcttcaagccattt---tttaaaatgtctctttctctcctaaatatata i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14021105 359 - 14338769 CCAGG--TAACTGTCCCC---------------ATCtactaaa---------------aacaggtgggagactgtcaaagtccacacactgaat-----ggtaagcccatattcccacccacacaacccta-----catccccttctccacttggcttttaggatgctggcagccaggattgcacctc-tagacag-gaaatctcaagatttttctctggaacaaaac-----aaaaaaaaa----tttttttttttcctctgggaaaactcaactcagagaaaagacctatatgctggctgcctgccttattattctatggagaggactacaggctagcaagcctggcccatac----tg-taacacagagcttcaagccattt---tttaaaatgtctctttctctcttaaaaatata i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 959352 367 + 1946073 CCAGG--TAACTGTCCTC---------------ATCtactaaa---------------aacaggtgggagactgtcaaagtccacacactgaat-----gataagcccatatccccacccacacaacccta-----catccccttctccacttggcttttaggatgctggcagccaagcttgcacctc-tagacag-gaaatctcaagatttttctctggaacaaaac-----aaaaaaaaatttttttttttttttcctctgggaaaactcaactcagagaaaagacctatatgctggctgcctgccttattattctacgcagaggactacaggctagcaagcctggcccatactgtatg-taacacagagcttcaagccattt---tttaaaacgtctctttctctcttaaaaatgta i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1985992 354 - 2117846 CCAGG--TAACTGTCCTC---------------ATCtaccgaa---------------aacaggtgggaaactgtccaagtccacacactgaat-----gatgagcccatattcccatccccacaacccta----ccattcccttctccacttggct-ttaggatgctggcagccaaccttgcacctc-tagacag-gaaatctcaagattcttctctggaacaaaac-----aaaaa--------ttttttgttttcctctgggaaaactcaactcagagaaaagacctatatgctggcaggctggcttattgttctatggagaggaccataggcaaacaagcctggcccatac----tcttaacacagagcttcaaaccattt---ttaaaaaca--tctttatctcttaaaaatata i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8897049 351 - 16357246 CCAGGTTTAACTGTCCTC---------------CTCtactgaa---------------aacaggtggaagactgtcaaagtccacacactgaat-----gatgagcccatattcccatccctacaacccta----ccatccccttctccacttggct-ttaggatgctggcagccaagcttgcacctc-tcaacag-gaaatctcaaggttcttctctggaacaaaac-----aaaaa--------ttttttgttttcctctgggaaaactcaactcagagaaaagacccatatgctggctggttgccttattgttct----agaggaccacaggccaacaagcctggcccatac----tc-taacacagagcttcaaaccattt---ttaaaaaca--tctttctctcttaaaaatata i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1382700 353 - 1807191 CCAGG--TAACTGTCCTC---------------ACCtactgaa---------------aacaggtgggagattgtcaaagtccacacactgaat-----gatgagcccatattcccatccccacaacccta----ccatccccttctcctcttggct-ttaggatgctggcagccaagcttgcaactc-tagacag-gaaatctcaagattattctctggaacaaaac-----aaaaa--------ttttttgttttcctctgggaaaactcaattcagagaaaagacctatatgctggctggctgccttattgttctatggagaggaccacaggccaacaagcctggcccatac----tc-taacacagagcttcacaccattt---ttaaaaaca--tctttttctcttaaaaatata i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 60860 357 + 5963231 ccagg--taactgtcctc---------------atctactgaa---------------aacaggtgggagactgtcaaagtccacacactgaat-----gatgagcccatattcccatccccacaacccta----ccatccccttctccacttgggt-ttaggatgctggcagccaagcctgcatctc-tagacag-gaaatctcaagattcttctctagaacaaaac-----aaacaaaat----ttttttgttttcctctgggaaaactcaactcagagaaaagatctatatgctggctggttgccttattgttctatggagaggaccacaggccaacaagcctggcccatac----tc-taacacagatcttcaaatcattt---ttaaaaaca--tctttctctcttaaaaatata i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36320415 271 - 42659167 CTAGG--TCACTATCTCC---------------ACCAGAGGGGCAGATGGCACACTCTAACAGAGGGGAGGACATCAAAGACTGCACCCCGAAT--------GAGACCACACCCCCACCC-CACAACCCTA----TAACCCCCTTCTATACTTGGCTTTCAGGATACTGGTAGGTAAGGTTCAATCTC-TAGATAGAAAAATCTCAAGGTTTTCCTCTGG-------------GAAAA--------TT------------------------------------------------------------------------------------------acaagctttactcatac----tg-caacacagagcttcaaactactt--gtttttagcatctctttctctcctaaaaataca i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 111905 334 + 1056298 CAGAG--TAACTGGCCTCCcagagcagtatggggcatactgga---------------cacaggtgggaggaagtcaaagcctgagcactgaag-----gatgagaccccatcc-------tgcaaacccattcactgtccccttccccacttagcttcctgtatgctggtagtcaagtttatatctcacagacag-gaaatttcaagacttttctctg--------------aaaga------------------------------actgaactcagtgaaaaga-----gtactgactggatgccttgtcataatacacagagagatgccaggtaatgaaccttgccaacac----tg-tgatacagaggttcaaattattattatttgtagca--tctctctctcttgaaaatata i dasNov3.JH570235 C 0 I 530 e mm10.chr15 82848423 2899 + 104043685 I e canFam3.chr10 46129423 61 - 69331447 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=33224.000000 s hg38.chr22_GL383582v2_alt 117723 3 + 162811 aat s panTro5.chr22 28897654 3 + 37823149 aat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41172223 3 + 50109623 aat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3195068 3 + 4464012 aat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106690816 3 - 115148730 aat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84307296 3 + 92844088 aat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87653663 3 - 96509753 aat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7150268 3 - 13098629 aac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4110139 3 - 4483953 aat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24740454 3 + 33263144 aat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14021464 3 - 14338769 aat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 959719 3 + 1946073 aat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1986346 3 - 2117846 aat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8897400 3 - 16357246 aat i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1383053 3 - 1807191 aat i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 61217 3 + 5963231 aat i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36320686 3 - 42659167 agt i otoGar3.GL873526 C 0 I 1964 e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 112239 530 + 1056298 I e canFam3.chr10 46129423 61 - 69331447 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=43875.000000 s hg38.chr22_GL383582v2_alt 117726 4 + 162811 caag s panTro5.chr22 28897657 4 + 37823149 caag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41172226 4 + 50109623 caag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3195071 4 + 4464012 caag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106690819 4 - 115148730 caag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84307299 4 + 92844088 caag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87653666 4 - 96509753 caag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7150271 4 - 13098629 caag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4110142 4 - 4483953 caag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24740457 4 + 33263144 caag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14021467 4 - 14338769 caag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 959722 4 + 1946073 caag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1986349 4 - 2117846 caag i calJac3.chrUn_GL286373 C 0 I 66 s saiBol1.JH378157 8897403 4 - 16357246 caaa i saiBol1.JH378157 C 0 I 67 s cebCap1.NW_016107750v1 1383056 4 - 1807191 caag i cebCap1.NW_016107750v1 C 0 I 440 s aotNan1.NW_018512383v1 61220 4 + 5963231 caag i aotNan1.NW_018512383v1 C 0 I 718 e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 112239 530 + 1056298 I e canFam3.chr10 46129423 61 - 69331447 I e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=1683772.000000 s hg38.chr22_GL383582v2_alt 117730 274 + 162811 gctgggtgcagtggctcaagcctgtaatcccagcactttgggaggccgaggtgg------------------gcggatc--acctgaggtcaggagctcgagaccagactgac----caacgtggagaaa-cct---catgtcttctaaaaatacaaaat------------tagctgtgcatggtggcgcatgcctctaatcccagctactcaggaggctgaggcaagagaatcgcttgaacctgggaagcggaggttgcggtgagc----------------tgagattgcgccattgcactccagcctgggcaacaagagcgaaact s panTro5.chr22 28897661 290 + 37823149 gctgggtgcagtggctcaagcctgtaatcccagcactttgggaggccgaggtgg------------------gcggatc--acctgaggtcaggagctcgagaccagactgac----caacgtggagaaa-cct---catgtcttctaaaaatacaaaat------------tagctgcgcatggtggcgcatgcctctaatcccagctactcaggaggctgaggcaagagaatcgcttgaacctgggaagcggaggttgcggtgagcagaggttgcggtgagctgagattgcgccattgcactccagcctgggcaacaagagcgaaact i panTro5.chr22 C 0 C 0 s panPan2.chr22 41172230 290 + 50109623 gctgggtgcagtggctcaagcctgtaatcccagcactttgggaggccgaggtgg------------------gcggatc--acctgaggtcaggagctcgagaccagactgac----caacgtggagaaa-cct---catgtcttctaaaaatacaaaat------------tagctgcgcatggtggcgcatgcctctaatcccagctactcaggaggctgaggcaagagaatcgcttgaacctgggaagcggaggttgcggtgagcagaggttgcggtgagctgagattgcgccattgcactccagcctgggcaacaagagcgaaact i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3195075 274 + 4464012 gctgggtgcagtggctcaagcctgtaatcccagcactttgggaggccgaggtgg------------------gcggatc--acctgagctcaggagctcgagaccagcctgac----caacgtggagaaa-ccc---catgtcttctaaaaatacaaaat------------tagctgcgcatggtggtgcatgcctctaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaagcggaggttgcggtgagc----------------tgagattgcgccattgcactccagcctgggcaacaagagcgaaact i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106690823 293 - 115148730 gctgggcgcagtggctcaagcctgtaattccagcactttgggaggccgaggtgggcggatcacctgaggtcagcggatc--acctgaggtcaggagctcaagaccagcctgac----caatgtggagaaacccc---catgtcctctaaaaatacaaaat------------gagctgcgcatggtggcgcatgcctctaatcccacctactcaggaggctgaggcaggagaattgcttgaacctggaaagcagaggttgcagtgagc----------------taagattgcaccattgcactccagcctgggcaacaagagcgaaact i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84307303 270 + 92844088 gccggacgtggtggcttaagcctgtaatcccagcactttgggaggccgagatgg------------------gcagatc--acctaaggtcaggagttcgagaccagcctgac----caacacggagaaa-ccc---cgtctctactaaaaatacaaaat------------tagctgcacatggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatagcttgcacctgggaggtggaggttgcagtgagc----------------tg----tgagccattgcattccagcctgggcaacaagagcgaaact i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87653670 270 - 96509753 gccggacgtggtggcttaagcctgtaatcccagcactttgggaggccgagatgg------------------gcagatc--acctaaggtcaggagttcgagaccagcctgac----caacacggagaaa-ccc---cgtctctactaaaaatacaaaat------------tagctgcacatggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatagcttgcacctgggaggtggaggttgcagtgagc----------------tg----tgagccatagcattccagcctgggcaacaagagcgaaact i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7150275 270 - 13098629 gccggacgtggtggcttaagcctgtaatcccagcactttgggaggccgagatgg------------------gcagatc--acctaaggtcaggagttcgagaccagcctgac----caacagggagaaa-ccc---tgtctctactaaaaatacaaaat------------tagctgcacatggtggcgcatgcctgtaatcccagctactcgggaggctgaggcagaagaatagcttgcacctgggaggtggaggttgcagtgagc----------------tg----tgagccattgcattccagcctgggcaacaagagcgaaact i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4110146 270 - 4483953 gccggacgtggtggcttaagcctgtaatcccagcactttgggaggccgaggtgg------------------gcagatc--acctaaggtcaggagttcgagaccagcctgac----caacacggagaaa-ccc---cgtctctactaaaaatacaaaat------------tagctgcacatggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatagcttgcacctgggaggcggaggttgcagtgagc----------------tg----tgagccattgcattccagcctgggcaacaagagcgaaact i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24740461 274 + 33263144 gccggacacggtggcttaagcctgtaataccagcactttgggaggccgaggtgg------------------gcagatc--acctgaggtcaggagtttgagaccagcctgac----caacacggagaaa-ccc---catctctactaaaaatacaaaat------------tagctgcacatggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatagcttgcacctgggaggcggaggttgcagtgagc----------------tgagattgcgccattgcattccagcctgggcaacaagagtgaaact i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14021471 270 - 14338769 gccggacgtggtggcttaagcctgtaatcccagcactttgggaggccgaggtgg------------------gcagatc--acctaaggtcaggagttcgagaccagcctgac----caacacggagaaa-gcc---cgtctctactaaaaatacaaaat------------tagctgcacatggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatagcttgcacctgggaggcggaggttgcagtgagc----------------tg----tgagccattgcattccagcctgggcaacaagagcgaaact i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 959726 275 + 1946073 gccggacgcgatggcttaagcctgtaatcccagcactttgggaggctgaagtgg------------------gcagatc--acctgaggtcaggagttcgagaccagcctgac----caacatggagaaacccc---catctctactaaaaatacaaaat------------tagctgcacatggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgcacctgggaggcggaggttgcagtgagc----------------tgagattgcgccattgcattctagcctgggcaacaagagcgaaact i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1986419 278 - 2117846 gctaagtgtggtggctcacacctataaatccagtactttggaaggctgacatgg------------------gaggatt--gcttaagcttaggagattgagaccaacctgcctgggcaacaaagtgaca-tgcacatgtctctacaaaaagcaaaaaaaaaaaaaaaaaatcagccaggcatactgacatgcaactgcggt-ccagctacttgggagg-------------gtcccatgagcccagtggttggaggctgcagtgagc----------------catgatcacatcactgcactccagcctgggtaa-gagcgtgaaact i calJac3.chrUn_GL286373 I 66 C 0 s saiBol1.JH378157 8897474 264 - 16357246 gctaagtgtggtggctcacgcctctaattccagtactttttaaggttgacatgg------------------gaggattaagcttaagcttaggagattgagaccaacctgcctgggcaacaaagtgaca-tgc---tgtctctacaaaaagtaaaaaaa-------------agtcaggcatactggcatgcaactgtggt-ccggctacttgggaag-------------gtcctgtgagcccagtggttggaagctgcagtgagc----------------catgatcacatcactgccctccagcctgggtaa-gagtgtgaaact i saiBol1.JH378157 I 67 I 344 e aotNan1.NW_018512383v1 61224 718 + 5963231 I e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 112239 530 + 1056298 I e canFam3.chr10 46129423 61 - 69331447 I e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I e cebCap1.NW_016107750v1 1383060 440 - 1807191 I a score=180482.000000 s hg38.chr22_GL383582v2_alt 118004 30 + 162811 ccatctcaataaagaaaaaaaaa-----------------------------tcaagac s panTro5.chr22 28897951 31 + 37823149 ccatctcaataaagaaaaaaaaa----------------------------atcaagac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41172520 31 + 50109623 ccatctcaataaagaaaagaaaa----------------------------atcaagac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3195349 32 + 4464012 ctgtctcaataaagaaaaaaaaa---------------------------aatcaagac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106691116 34 - 115148730 ctgtctcaaaaaagaaaaaaata-------------------------tatatcaagac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84307573 59 + 92844088 ccgtctcaaaaaagaaaaaaaaagaaaaacaaacaaacaaacaaaatatatatcaagac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87653940 59 - 96509753 ccgtctcaaaaaagaaaaaaaaagaaaaacaaacaaacaaacaaaatatatatcaagac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7150545 59 - 13098629 ccgtctcaaaaaagaaaaaaaaagaaaaacaaacaaacaaacaaaatatatatcaagac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4110416 59 - 4483953 ccgtctcaaaaaagaaaaaaaaagaaaaacaaacaaacaaacaaaatatatatcaagac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24740735 59 + 33263144 ccgtctcaaaaaagaaaaaaaaagaaaaacaaacaaacaaacaaaatatatatcaagac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14021741 59 - 14338769 ccgtctcaaaaaagaaaaaaaaagaaaaacaaacaaacaaacaaaatatatatcaagac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 960001 55 + 1946073 ccatctcaaaaaagaaaaaaaaagaa----aaacaaacaaacaaaatatatatcaagac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1986697 28 - 2117846 --gtctgaaaacaaaaacaaaaa-----------------------------CCAAAAC i calJac3.chrUn_GL286373 C 0 I 370 e aotNan1.NW_018512383v1 61224 718 + 5963231 I e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 112239 530 + 1056298 I e canFam3.chr10 46129423 61 - 69331447 I e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I e cebCap1.NW_016107750v1 1383060 440 - 1807191 I e saiBol1.JH378157 8897738 344 - 16357246 I a score=2187079.000000 s hg38.chr22_GL383582v2_alt 118034 388 + 162811 atctgaagaacctctaacaagaaa-gagaaaataggaaacagacaaagatttttaaaaattatagtacaggccaagtgtagtggctca---cgcctgtaattccagcactttggaaggctgacgtgggaggattgcttaagctcaggtggtg---agaccagcctgcctgggcaacaaagtgagatgctg-tctctacaaaaagt-aaaaaacttagccaggtgtactggcatgcacctgtggtccagctacttgggaggatcccttgagcccagtggttggaggctgcagtgagccatcatcacatcactgcactccagcctgggtaagggcatgaaactg----------aaacaaaaacaaaaacaaaaaatacgttataatgtattcaaaaagcaagagaaac s panTro5.chr22 28897982 388 + 37823149 atctgaagaacctctaacaagaaa-gagaaaataggaaacagacaaagatttttaaaaattatagtacaggccaagtgtagtggctca---cgcctgtaattccagcactttggaaggctgacgtgggaggattgcttaagctcaggtggtg---agaccagcctgcctgggcaacaaagtgagatgctg-tctctacaaaaagt-agagaacttagccaggtgtactggcatgcacctgtggtccagctacttgggaggatcccttgagcccagtggttggaggctgcagtgagccatcatcacatcactgcactccagcctgggtaagggcatgaaactg----------aaacaaaaacaaaaacaaaaaatacgttataatgtattcaaaaagtaagagaaac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41172551 388 + 50109623 atctgaagaacctctaacaagaaa-gagaaaataggaaacagacaaagatttttaaaaattatagtacaggccaagtgtagtggctca---cgcctgtaattccagcactttggaaggctgacgtgggaggattgcttaagctcaggtggtg---agaccagcctgcctgggcaacaaagtgagatgctg-tctctacaaaaagt-agagaacttagccaggtgtactggcatgcacctgtggtccagctacttgggaggatcccttgagcccagtggttggaggctgcagtgagccatcatcacatcactgcactccagcctgggtaagggcatgaaactg----------aaacaaaaacaaaaacaaaaaatacgttataatgtattcaaaaagtaagagaaac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3195381 388 + 4464012 atctgaagaacctctaacaagaaa-gagaaaataggaaccagacaaagatttttaaaaattatagtacaggccaagtgtagtggctta---cgcctgtaattccagcactttggaaggctgacgtgggaggattgcttaagctcaggtggtg---agaccagcctgcctgggcaacaaagtgagatgctg-tctctacaaaaagt-aaaaaacttagccaggtgtactggcatgcacctgtggtccagctacttgggaggatcccttgagcccagtggttggaggctgcagtgagccatcatcacatcactgcactccagcctgggtaagggcatgaaactg----------aaacaaaaacaaaaacaaaaaatatgttataatgtattcaaaaagtaaaagaaac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106691150 390 - 115148730 gtctgaagaacctctaacaaga------aaaataggaaacagacaaagatttttaaaaattataatacaggccaagtgtggtggctcacaccacctgtaattccagcactttggaaggctgaggtgggaggattgcttaagctcaggaggtgacaacaccagcctgcctgggcaacaaagtgagatgctg-tctctacaaaaagtaaaaaaactcagccaggtgtactggcatgcacctgtggtccagctacttgggaggatccctcgagcccagtggttggaggctgcagtgagccatgatcacatcactgcactccagcctgggtaagggtgtgaaactg----------aaacaaaaacaaaaacaaaaaatacattatgatgtgttcaaaaagtaagagaaat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84307632 387 + 92844088 atctgaagaacctctaataagaaaggagaaaataggaaacagacaaagatttttaagaattacaatacaggccaagagtggtggctca---cgcctataattccagcactttggaaggctgaggtgggaggattgcttaagctcaggaggtg---agaccagcctgcctgggcaacaaagtaaaatgctg-tctctacaaaaagt-aaaaaactttgccaggtgtactggcatgcacctgtggtccagctacttggaaggatcccttgagcccagtggttggaggccgcagtgagccatgatcacatcactgcactccagcctgggtaagggcgtgaaactgtctg------------aaacaaaaacaaaaaacacactataatgtattcaaaaagtaagagaaat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87653999 387 - 96509753 atctgaagaacctctaataagaaaggagaaaataggaaacagacaaagatttttaagaattacaatacaggccaagagtggtggctca---cgcctataattccagcactttggaaggctgaggtgggaggattgcttaagctcaggaggtg---agaccagcctgcctgggcaacaaagtaaaatgctg-tctctacaaaaagt-aaaaaactttgccaggtgtactggcatgcacctgtggtccagctacttggaaggatcccttgagcccagtggttggaggccgcagtgagccatgatcacatcactgcactccagcctgggtaagggcgtgaaactgtctg------------aaacaaaaacaaaaaacacactataatgtattcaaaaagtaagagaaat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7150604 387 - 13098629 atctgaagaacctctaataagaaaggagaaaataggaaacagacaaagatttttaagaattacaatacaggccaagagtggtggctca---cgcctataattccagcactttggaaggctgaggtgggaggattgcttaagctcaggaggtg---agaccagcctgcctgggcaacaaagtaaaatgctg-tctctacaaaaagt-aaaaaactttgccaggtgtactggcatgcacctgtggtccagctacatggaaggatcccttgagcccagtggttggaggccgcagtgagccatgatcacatcactgcactccagcctgggtaagggcgtgaaactgtctg------------aaacaaaaacaaaaaacacactataatgtattcaaaaagtaagagaaat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4110475 399 - 4483953 atctgaagaacctctaacaagaaaggagaaaataggaaacagacaaagatttttaagaattacaatacaggccaagagtggtggctca---cgcctataattccagcactttggaaggctgaggtgggaggattgcttaagctcaggaggtg---agaccagcctgcctgggcaacaaagtaaaatgctg-tcgctacaaaaagt-aaaaaactttgccaggtgtactggcatgcacctgtggtccagctacttggaaggatcccttgagcccagtggttggaggccacagtgagccacgatcacatcactgcactccagcctgggtaagggcgtgaaactgtctgaaacaaaaacaaaaacaaaaacaaaaaacacattataatgtattcaaaaagtaagagaaat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24740794 387 + 33263144 atctgaagaacctctaacaagaaaagagaaaataggaaacagacaaagaTTTTTAAGAATTACAATACAgaccaagagtggtggctca---cgcctataattccagcactttggaaggctgaggtgggaggattgcttaagctcaggaggtg---agaccagcctgcctgggcaacaaagtaaaatgctg-tctctacaaaaagt-aaaaaactttgccaggtgtactggcatgcacctgtggtccagctacttggaaggatcccttgagcccagtggttggaggccacagtgagccatgatcacatcactgcactccagcctgggtaagggcgtgaaactgtctg------------aaacaaaaacaaaaaaCacattataatgtattcaaaaagtaagagaaat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14021800 393 - 14338769 atctgaagaacctctaacaagaaaggagaaaataggaaacagacaaagatttttaagaattacaatacaggccaagagtggtggctca---cgcctataattccagcactttggaaggctgaggtgggaggattgcttaagctcaggaggtg---agaccagcctgcctgggcaacaaagtaaaatgctg-tctctacaaaaagt-aaaaaactttgccaggtgtactggcatgcacctgtggtccagctacttggaaggatcccttgagcccagtggttggaggccgcagtgagccatgatcacatcactgcactccagcctgggtaagagtgtgaaactgtctg------aaacaaaaacaaaaacaaaaaacacattataatgtattcaaaaagtaagagaaat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 960056 395 + 1946073 atctgaagaacctctaacaagaaaagagaaaacaggaaacagacaaagatttttaaaaattacaatacaggccaagagtggtggctca---cgcctataattccagcactttggaaggctgaggtgggaggattgcttaagctcaggaggtg---agaccagcctgcctgggcaacaaagtaagacgctgatctctacaaaaagtaaaaaaactttgccaggtgtactggcatgcacctgtggtccagctacttgagaggatcccttgagcccagtggttggaggccgcagtgagccatgatcacatcactgcactccagcctgggtaagggcgtcaaactgtctg------aaacaaaaacaaaaacaaaaaacacattataatgtattcaaaaagtaagagaaac i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512383v1 61224 718 + 5963231 I e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 112239 530 + 1056298 I e canFam3.chr10 46129423 61 - 69331447 I e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I e cebCap1.NW_016107750v1 1383060 440 - 1807191 I e saiBol1.JH378157 8897738 344 - 16357246 I e calJac3.chrUn_GL286373 1986725 370 - 2117846 I a score=104330.000000 s hg38.chr22_GL383582v2_alt 118422 18 + 162811 gattatagccatcaacta s panTro5.chr22 28898370 18 + 37823149 gattatagccatcaacta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41172939 18 + 50109623 gattatagccatcagcta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3195769 18 + 4464012 gattatagccatcaacta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106691540 18 - 115148730 gattacagccatcaacta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84308019 18 + 92844088 gattacagccatcaacta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87654386 18 - 96509753 gattacagccatcaacta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7150991 18 - 13098629 gattacagccatcaacta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4110874 18 - 4483953 gattacagccatcaacta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24741181 18 + 33263144 tattacagccatcaacta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14022193 18 - 14338769 gattacagccatcaacta i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 960451 18 + 1946073 gactacagccatcaacta i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8898082 10 - 16357246 gattacagct-------- i saiBol1.JH378157 I 344 C 0 e aotNan1.NW_018512383v1 61224 718 + 5963231 I e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 112239 530 + 1056298 I e canFam3.chr10 46129423 61 - 69331447 I e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I e cebCap1.NW_016107750v1 1383060 440 - 1807191 I e calJac3.chrUn_GL286373 1986725 370 - 2117846 I a score=2929839.000000 s hg38.chr22_GL383582v2_alt 118440 366 + 162811 ggctctgattattctttaaaagtcagtacattcagag------aaaaaaaaagctcttcaaaatATCAAG-AAAAAAAATAAGTAAATAAAAGGCTAGAAggctgggcactgtggcttgtggcacatgcctataatcctggtactttagaagaccgaagtggaaggattgcttgagtccagcagtttgagaccactctgggcaacac-agtgagaccttgtttctgcaaaaaatataaatat-tagctgggcatggtggcacacacctttagtcccaggtaccagggagccccagagttcgagaatgcagtaagctgtgatcgcaccactgcattccagcctgagtgacaacaaaacaaaa--------------------------caaaacaaaacaaa s panTro5.chr22 28898388 357 + 37823149 ggctctgattattctttaaaagtcagtacattcagag------aaaaaaaaagctcttcaaaatatcagg-aaaaaaa-taagtaaataaaaggctagaaggctgggcactgtggcttgtggcacatgcctataatcctggtactttagaagaccgaagtggaaggattgcttgagtccagcagtttgagaccactctgggcaacac-agtgagaccttgtttctgcaaaaaacataaatat-tagctgggcatggtggcacacgcctttagtcccaggtaccagggagccccagagttcgagaatgcagtaagctgtgatcgcaccactgcattccagcctgagtgacaacaaaacaaaa--------------------------caaaac-------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41172957 357 + 50109623 ggctctgattattctttaaaagtcagtacattcagag------aaaaaaaaagctcttcaaaatatcagg-aaaaaaa-taagtaaataaaaggctagaaggctgggcactgtggcttgtggcacatgcctataatcctggtactttagaagaccgaagtggaaggattgcttgagtccagcagtttgagaccactctgggcaacac-agtgagaccttgtttctgcaaaaaatataaatat-tagctgggcatggtggcacacgcctttagtcccaggtaccagggagccccagagttcgagaatgcagtaagctgtgatcgcaccactgcattccagcctgagtgacaacaaaacaaaa--------------------------caaaac-------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3195787 356 + 4464012 ggctctgattattctttaaaagtcagtacattcagag------aaaaaaaaagctcttcaaaatatcagg-aaaaaaa-----taaataaaaggctagaaggctgggcactgcggcttgtggcacatgcctataatcctggtactttagaaggccgaagtggaaggattgcttgagtccagcagtttgagaccactctgggcaacac-agtgagaccttgtttctgcaaaaaatataaatat-tagctgggcatggtggcacacgcctttagtcccaggtaccagggagccccagagttcgagaatgcagtaagctgtgatcgcaccactgcattccagcctgagtgacaacaaaacaaaa--------------------------caaaac-----aaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106691558 349 - 115148730 ggctctgattattctttaaaagtcagtacattcagag-----aaaaaaaaaagctcttcaaaatatcagg-aaaaaaa-taagtaaataaaaggctagaaggctgggcgctgtggcttgtggcacatgcctataatcctggcactttagaaggccgaagtggaaggattgcctgagtccagcagtttgagaccactctgggcaacac-agtgagaccttgtttctgcaaaaaatataaatat-tagctgggcatggtagcacacgcctttaatcccaggtaccagggagccccagagttcgagaatgcagaaagctgtgatcgcaccactgcattccagcctgagtgac---------aaa--------------------------caaaac-------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84308037 347 + 92844088 ggctc----tgttctttaaaagtcagtacattcagag----aaaaaaaaaaagctcttcaaaatatcagg-aaaaaaa-taagtaaataaaagactagaaggctggacgctgtggcttgtggcacatgcctatactcctggcactttggaagggcaaagtggaaggattgcttgagtacagcagtttgagaccactctgggcaacac-agtgagaccctgtctctgcaaaaaatataaatat-tagctgggcatggtggcacacgcctttagtcccaggtaccagggagcct--------gagaatgcagtgagctgtgaacgcaccactgcattccagcctgagtgacaaaaaaccaaaa--------------------------caaaac-------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87654404 349 - 96509753 ggctc----tgttcttttaaagtcagtacattcagag--aaaaaaaaaaaaagctcttcaaaatatcagg-aaaaaaa-taagtaaataaaagactagaaggctggacgctgtggcttgtggcacatgcctatactcctggcactttggaagggcaaagtggaaggattgcttgagtacagcagtttgagaccactctgggcaacac-agtgagaccctgtctctgcaaaaaatataaatat-tagctgggcatggtggcacacgcctttagtcccaggtaccagggagcct--------gagaatgcagtgagctgtgaacgcaccactgcattccagcctgagtgacaaaaaaacaaaa--------------------------caaaac-------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7151009 352 - 13098629 ggctc----tgttctttaaaagtcagtacattcagag----aaaaaaaaaaagctcttcaaaatatcagg-aaaaaag-taagtaaataaaagactagaaggctggacgctgtggcttgtggcacatgcctatactcctggcactttggaaggccaaagtggaaggattgcttgagtacagcagtttgaga-cactctgggcaacac-agtgagaccctgtctctgcaaaaaatataaatat-tagctgggcatggtggcacacgcctttagtcccaggtaccagggagcct--gagttcgagaatgcagtgagctgtgaacgcaccactgcattccagcctgagtgacaaaaaaacaaaa--------------------------caaaac-------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4110892 354 - 4483953 ggctc----tgttctttaaaagtcagtacattcagag---aaaaaaaaaaaagctcttcaaaatatcagg-aaaaaaa-taagtaaataaaagactagaaggctggacgctgtggcttgtggcacatgcctataatcctggcactttggaaggccaaagtggaaggactgcttgagtacagcagtttgagaccactctgggcaacac-agtgagaccctgtctctgcaaaaaatataaatat-tagctgggcatggtggcacacgcctttagtcccaggtaccagggagcct--gagttcgagaatgcagtgagctgtgaacgcaccactgcattccagcctgagtgacaaaaaaacaaaa--------------------------caaaac-------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24741199 360 + 33263144 ggctctgattgttctttaaaagtcagtacattcagag-aaaaaaaaaaaaaagctcttcaaaatATCAGG-AAAAAAA-TAAGTAAGTAAAAGACTAGAAggctggacgctgtggcttatggcacatgcctataatcctggcactttggaaggccaaagtggaaggattgcttgagtacagcagttttagaccactctgggcaacac-agtgagaccctgtctctgcaaaaaatataaatat-tagctgggcatggtggcacacgcctttagtcccaggtaccagggagcct--gagttcgagaatgcagtgagttgtgaatgcaccactgcattccagcctgagtgacaaaaaaccaaac--------------------------caaaac-------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14022211 353 - 14338769 ggctc----tgttctttaaaagtcagtacattcagag----aaaaaaaaaaagctcttcaaaatatcagg-aaaaaaa-taagtaaataaaagactagaaggctggacgctgtggcttgtggcacatgcctataatcctggcaccttggaaggccaaagtggaaggattgcttgagtacagcagtttgagaccactctgggcaacac-agtgagaccctgtctctgcaaaaaatataaatat-tagctgggcatggtggcacacgcctttagtcccaggtaccagggagcct--gagttcgagaatgcagtgagctgtgaacgcaccactgcattccagcctgagtgacaaaaaaacaaaa--------------------------caaaac-------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 960469 357 + 1946073 ggctctgattgttctttaaaagtcagtacattcagag----gaaaaaaaaaagctcttcaaaatatcagg-aaaaaaa-taagtaaataaaagactagaaggctggacgctgtggcttgtggcacatgcctataatcctggcactttggaaggccaaagtggaaggactgcttgagtacagcagcttgagaccactctgggcaacac-agtgagaccctgtctccgcaaaaaatataaatat-tagctaggcatggtggcacacgcctttagtcccaggtaccagggagccc--gagttagagaatgcagtgagctgtgatcgcaccactgcattccagcctgagtgacaaaaaaacaaaa--------------------------caaaac-------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1987095 354 - 2117846 GGCTCTGACGATTCTTTAAAAATCAGTACATTCAAAG--AAAAAAAAAAAAAGCTCTTCAAAATATCAGG-AAAAAAA-TAAGTAAATAAAAGGTTAGAAGGCTGGGCAGTATGGCTTgtgactcatgcctctaatcctggcactttggaaggccaaagtgggaagactacttgagtctagcagtttgagaccagtatgggcaacat-agtgagaccctgtctctacaaaaaatacaaaaag-tagctgggcatggtggcacatgcctttagtcccagctactagagagccccagagttcgaggctgcagtgagctgtgatcataccactgcattccagcttaagtgacaaaAA---------------------------------CAAAAC-------- i calJac3.chrUn_GL286373 I 370 C 0 s saiBol1.JH378157 8898092 389 - 16357246 ggctctgacaattctttaaaaatcagtacattcagag--aaaaaaaaaaaaagctcttcaaaatatccggaaaaaaaa-taagtaaataaaaggttagaagGCTGGGCAGTATGGCTTgtggctcatgcctataatcctggcactttggaaggccaaagtggaaaggctacttgagtctagcagtttgagatcagtcggggcaacat-tgtgagaccttgtctctacaaaaaatacaaaaaattagctgggcatggtggcacaagcctttagtcccagctactagggagcctcagagtttgaggctgcagtcagctgtgattgtaccactgcattccagcctgagtgacaaaaaaaaaaaaacaacaaaaaacaaaaacaaaAACACCAAAAA-------- i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 61942 374 + 5963231 ggctctgacgattctttaaaaatcagtacattcagagaaaaaaaaaaaaaaagctcttcaaaatatcagg-aaaaaat-taagtaaataaaaggttagaaggctgggcagtatggcttgtggctcatgcctataatcctggcactttggaaggccaaagtgggaagactacttgagtctagcagtttgagaccagtctgggcaacataagtgagatctcgtctctacaaaacatacaaaaat-tagctgggcatggtggcacatgcctttagtcccagctactagggaaccccagagttcgaggctgcagtgagctgtgattgtaccactgcattccagcttgagtgacaaaaaaaaaaaaaaagcaaaac----------------caaaaa-------- i aotNan1.NW_018512383v1 I 718 C 0 e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 112239 530 + 1056298 I e canFam3.chr10 46129423 61 - 69331447 I e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I e cebCap1.NW_016107750v1 1383060 440 - 1807191 I a score=-5888.000000 s hg38.chr22_GL383582v2_alt 118806 21 + 162811 acca-----aaacaaaacC-----CACATAC s panTro5.chr22 28898745 19 + 37823149 --ca-----aaacaaaaac-----cacatac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41173314 19 + 50109623 --ca-----aaacaaaaac-----cacatac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3196143 21 + 4464012 acca-----aaacaaaaac-----cacatac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106691907 18 - 115148730 ---a-----aaacaaaaac-----cacatac i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 1987449 13 - 2117846 --CACTAACAAACAA---------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8898481 13 - 16357246 --CACTAACAAACAA---------------- i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 62316 13 + 5963231 --cactaacaaacaa---------------- i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46129484 21 - 69331447 ----------atcagaaatgaagataaacaa i canFam3.chr10 I 61 C 0 e mm10.chr15 82848423 2899 + 104043685 I e dasNov3.JH570235 112239 530 + 1056298 I e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I e cebCap1.NW_016107750v1 1383060 440 - 1807191 I e colAng1.NW_012115588v1 960826 0 + 1946073 C e manLeu1.NW_012102031v1 14022564 0 - 14338769 C e chlSab2.chr19 24741559 0 + 33263144 C e cerAty1.NW_011999588v1 4111246 0 - 4483953 C e macNem1.NW_012012688v1 7151361 0 - 13098629 C e macFas5.chr10 87654753 0 - 96509753 C e rheMac8.chr10 84308384 0 + 92844088 C a score=6466407.000000 s hg38.chr22_GL383582v2_alt 118827 731 + 162811 Aaaaaaga----ttagatgataaagctgaagaaagcatagagaaatcagaacaaaaaga-taatgagataaaacataaaacagaggagaaaagataaaaacagcggatcaatccaggaggtaaaatgccttatattaacaggaattataa----agagagcagagaaaatagagggaaggaaattttc-aaagaactaccacatgacaaattgcctgaactgaaagacatcagcgtaca-----taagatctcatagagtag---ccaacacaac-catgaaatgaccta-gtcaag--acctatcattttgacatctcaagaccctagggaaaaggagaagatcctcaaactttccagaagaaaaacagaacatgcatcaaggg--atg-aaaaattagaatgg---cagtcttctcaactgcagcactggaagctagtggacaaaccaggaagaacgactgcaagacagtgag-agaaaaatcacttccaatctagaattccacacctagccaactctcaattaagcatgaggctaggataaagtcatgctcagatatatag---gatctcaacatttttacactcccacacaccctttctcacaaaactactaaaggatgatgcacgcccttaaatgaaggctcactttaagaatgaggaagaaa------tgggattcaggaaacagaacattcaatagaggagagaaagaaatgaagatga-----------------tgatgttgatgatctgccccaggata--agttatgaaacagatcc s panTro5.chr22 28898764 731 + 37823149 aaaaaaga----ttagatgataaagctgaagaaagcatagagaaatcagaacaaaaaga-taatgagataaaacataaaacagaggagaaaagataaaaacagaggatcaatccaggaggtaaaatgccttatattaacaggaattataa----agagagcagagaaaatagagggaaggaaattttc-aaagaactaccacatgacaaattgcctgaactgaaagacatcagcgtaca-----taagatctcatagagtag---ccaacataat-catgaaatgaccta-gtcaag--acctatcattttgacatctcaagaccctagggaaaaggagaagatcctcaaactttccagaagaaaaacagaacatgcatcaaggg--atg-aaaaattagaatgg---cagtcttctcaactgcagcactggaagctagtggacaaaccaggaagaacgactgcaagacagtgag-agaaaaatcacttccaatctagaattccacacctagccaactctcaattaagcatgaggctaggataaagtcatgctcagatatatag---gatctcaacatttttacactcccacacaccctttctcacaaaactactaaaggatgatgcacgcccttaaatgaaggctcactttaagaatgaggaagaaa------tgggattcaggaaacagaacattcaatagaggagagaaagaaatgaagatga-----------------tgatgttgatgatctgccccaggata--agttatgaaacagatcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41173333 731 + 50109623 aaaaaaga----ttagatgataaagctgaagaaagcacagagaaatcagaacaaaaaga-taatgagataaaacataaaacagaggagaaaagataaaaacagaggatcaatccaggaggtaaaatgccttatattaacaggaattataa----agagagcagagaaaatagagggaaggaaattttc-aaagaactaccacatgacaaattgcctgaactgaaagacatcagcgtaca-----taagatctcatagagtag---ccaacataat-catgaaatgaccta-gtcaag--acctatcattttgacatctcaagaccctagggaaaaggagaagatcctcaaactttccagaagaaaaacagaacatgcatcaaggg--atg-aaaaattagaatgg---cagtcttctcaactgcagcactggaagctagtggacaaaccaggaagaacgactgcaagacagtgag-agaaaaatcacctccactctagaattccacacctggccaactctcaattaagcatgaggctaggataaagtcatgctcagatatatag---gatctcaacatttttacactcccacacaccctttctcacaaaactactaaaggatgatgcacgcccttaaatgaaggctcactttaagaatgaggaagaaa------tgggattcaggaaacagaacattcaacagaggagagaaagaaatgaagatga-----------------tgatgttgatgatctgccccaggata--agttatgaaacagatcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3196164 728 + 4464012 aaaaaaaa----ttagatgataaagctgaagaaagcatagagaaatcagaacaaaaaga-taatgagataaaacataaaacagaggagaaaagataaaaacagaggatcaatccaggaggtaaaatgccttatattaacaggaattataa----agagagcagagaaaatagagggaaggaaattttcaaaagaactaccacatgacaaattgcctgaactgaaagacatcagcgtaca-----taagatctcatagagta----ccaacataat-catgaaatgaccta-gtcaag--acctatcattttgacatctcaagaccctagggaaaaggagaagatcctcaaactttccagaagaaaaacagaacgtgcatcaaggg--atg-aaaaattagaatgg---cagtcttctcaactgcagcactggaagctagaggacaaaccaggaacaacgactgcaagacagtgag-agaaaaatcacttccaatctagaattccacacctagccaactctcaattaagcgtgaggctaggataaagtcatgctcagatatatag---gatctcaacatttttacactcccacacaccctttctcacaaaactactaaaggatgatgcacgctcttaaatgaaggctcactttaagaatgaggaagaca------tgggattcaggaaacagaacattcaata---gagagaaagaaatgaagatga-----------------tgatgttgatgatctgccccaggata--agttatgaaacagatcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106691925 727 - 115148730 aaaaaaga----ttagatgataaagttgaagaaagcatacagaaatcagaacaaaatga-taataagacaaaacataaaacagaggagaaaagataaaaacagaagatcaatctaggaggtaaaatgccttatattaacaagaat--tag----agagagcagagaaaatagagggaaggaaattttc-aaagaactaccaaatgacaaatttc-----ctgaaagacatcagcataca-----taagatctcatagaatag---ccaacataataaatgaaatgaccta-gtcaag--acctatcattttgatatctcaagaccctagggaaaaggagaagatcctcaaactttccaggagaaaaacagaacacgcatcaaggg--atg-aaaaattagaatag---cagtcttctcaactgccgcactggaagctagaggacaaaccaggaacaatgactgcaagacagtgag-agaaaaatcacttccaacctagaattccacacctagccaactcccaatcaagcatgaggctaggataaagtcatgctcagatatacag---gatctcaacatttttacactcccacacaccctttctcacaaaactactaaagcatgatgcacgcccttaaatgaaggctcactttaagaatgaggaagaca------tgggattcagaaaacagaacattcaatagaggagagaaagaaatgaagatga-----------------tgatgttgatgatctgccccaggataatagttatgaaacagatcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84308384 717 + 92844088 -aaaaata----ttagatgataaagttgaagaaagtacggagaaatcacaacaaaaaga-taatgag-------ataaaacagaggagaaaagataaaaacagaggatcaatccaggaggtaaaatgccttatattaacaggaattataaaaagagagagcagagaaaat----ggaaggaaattttc-agagaactaccacatgacaaatttcctgaactgaaagacatcagcgtaca-----taagatctcatagagtaa---ccaacataatcaatgaggagaccta-gtcaag--acctatcattttgacatctcaagaccctagggaaaaggagaagatcctcaaactttccaggagaaaaacagaacacgta-cgaggg--atgaaaaaattagaatgg---cagtcttctcatctgcagcactggaaggtagaggacaaaccaggaacaatgactgcaagtcagtaag-agaaaaatcacttccaatctagaattccacacctagccaattctcaattaagcatgaggctaggataaagtcatgctcaaatatacag---gatctcaacatttttgcatttccacgcaccccttgtcacaaaactactaaaggataatgcacacccttaaacgaaggcccactttaagaaccatgaagaca------tgggattcaggaaacagaacattcaatagaggagagaaagaaatgaaga--------------------------tgatgatctgccccaggataatagttatgaagccaaccc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87654753 717 - 96509753 -aaaaata----ttagatgataaagttgaagaaagtacggagaaatcacaacaaaaaga-taatgag-------ataaaacagaggagaaaagataaaaacagaggatcaatccaggaggtaaaatgccttatattaacaggaattataaaaagagagagcagagaaaat----ggaaggaaattttc-aaagaactaccacatgacaaatttcctgaactgaaagacatcagtgtaca-----taagatctcatagagtaa---ccaacataatcaatgaggagaccta-gtcaag--acctatcattttgacatctcaagaccctagggaaaaggagaagatcctcaaactttccaggagaaaaacagaacacgta-cgaggg--atgaaaaaattagaatgg---cagtcttctcatctgcagcactggaaggtagaggacaaaccaggaacaatgactgcaagtcagtaag-agaaaaatcacttccaatctagaattccacacctagccaattctcaattaagcatgaggctaggataaagtcatgctcaaatatacag---gatctcaacatttttgcatttccacgcaccccttgtcacaaaactactaaaggataatgcacacccttaaacgaaggcccactttaagaaccatgaagaca------tgggattcaggaaacagaacattcaatagaggagagaaagaaatgaaga--------------------------tgatgatctgccccaggataatagttatgaagccaaccc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7151361 715 - 13098629 -aaaaata----ttagatgataaagttgaagaaagtacggagaaatcacaacaaaaaga-taatgag-------ataaaacagaggagaaaagataaaaacagaagatcaatccaggaggtaaaatgccttatattaacaggaattataaaa--agagagcagagaaaat----ggaaggacattttc-aaagaactaccacatgacaaatttcctgaactgaaagacatcagcgtaca-----taagatctcatagagtaa---ccaacataatcaatgaggagaccta-gtcaag--acctatcattttgatatctcaagaccctagggaaaaggagaagatcctcaaactttccaggagaaaaacagaacacgta-cgaggg--atgaaaaaattagaatgg---cagtcttctcatctgcagcactggaaggtagaggacaaaccaggaacaatgactgcaagtcagtaag-agaaaaatcacttccaatctagaattccacacctagccaattctcaattaagcatgaggctaggataaagtcatgctcaaatatacag---gatctcaacatttttgcatttccacgcaccccttgtcacaaaactactaaaggatgatgcacacccttaaacgaaggcccactttaagaaccatgaagaca------tgggattcaggaaacagaacattcaatagaggagagaaagaaatgaaga--------------------------tgatgatctgccccaggataatagttatgaagccaaccc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4111246 705 - 4483953 -agaaata----ttagatgataaagttgaagaaagcacggagaaatcacaacaaaaaga-taatgag-------ataaaacagaggagaaaagataaaaacagaggatcaatccaggaggtaaaatgccttatattaacaggaattataaaaagagagagcagagaaaat----ggaaggaaattttc-aaagaact-----------aatttcctgaactgaaagacatcagcgtaca-----taagatctcatagagtaa---ccaacataatcagtgaggagaccta-gtcaag--acctatcattttgacatctcaagaccctagggaaaaggagaagatcctcaaactttccaggagaaaaacagaacacgta-cgaggg--atg-aaaaattagaatgg---cagtcttctcatctgcagcactggaagctagaggacaaaccaggaacaatgactgcaagacagtaag-agaaaaatcacttccaatccagaattccacatctagccaattctcaattaagcatgaggctaggataaagtcacgctcaaatatacag---gatctcaacatttttgcatttccacgcaccccttgtcacaaaactactaaaggatgatgcacacccttaaacaaaggcccactttaagaatcatgaagaca------tgggattcaggaaacagaacattcaatagaggagagaaagaaatgaaga--------------------------tgatgatctgccccaggataatagttatgaagccaaccc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24741559 716 + 33263144 -aaaaata----ttagatgataaagttgaagaaagcatggagaaatcacaacaaagaga-taatgag-------ataaaacagagaagaaaagataaaaacagaggatcaatccaggaggtaaaatgccttatattaacaagaattataaaaagagagagcagagaaaat----ggaaggaaattttc-aaagaactatcacatgataaatttcctgaactgaaagacatcagcgtaca-----taagatctcatagagtaa---ccaacataatcaatgaggagaccta-gtcaag--acccatcattttgacatctcaagaccctagggaaaaggagaagatcctcaaactttccaggagaaaaacagaacacgta-cgaggg--atg-aaaaattagaatgg---cagtcttctcatctgcagcactggaagctagaggacaaaccaggaacaatgactgcaagacagtaag-agaaaaatcacttccaatctagaattccacacctagccaattctcaattaagcatgaggctaggataaagtcatgctcaaatatacag---gatctcaacatttttgcatttccacgcaccccttgtcacaaaactactaaaggatgatgcacacccttaaacgaaggcccactttaagaatcatgaagaca------tgggattcaggaaacagaacattcaatagaggagagaaagaaatgaaga--------------------------tgatgatctgccccaggataactgttatgaagccaaccc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14022564 716 - 14338769 -aaaaata----ttagatgataaagttgaagaaagcacggagaaatcacaacaaaaaga-taatgag-------ataaaacagaggagaaaagataaaaacagaggatcaatccaggaggtgaaatgccttatattaacaggaattataaaaagagagagcagagaaaat----ggaaggaaattttc-aaagaactaccacatgacaaatttcctgaactgaaagacatcagcgtaca-----taagatctcatagagtaa---ccaacataatcaatgaggagaccta-gtcaag--acctatcattttgacatctcaagaccctagggaaaaggagaagatcctcaaactttccaggagaaaaacagaacacgta-cgaggg--atg-aaaaattagaatgg---cagtcttctcatctgcagcactggaagctagaggacaaaccaggaacaatgactgcaagacagtaag-agaaaaatcacttccaatctagaattccacacctagccaattctcaattaagcatgaggctaggataaagtcacgcccaaatatacag---gatctcaacatttttgcatttccacgcaccccttgtcacaaaactgctaaaggatgatgcacacccttaaacaaaggcccactttaagaatcacgaagaca------tgggattcaggaaacagaacattcaatagaggagagaaagaaatgaaga--------------------------tgatgatctgccccaggataatagttatgaagccaaccc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 960826 722 + 1946073 -aaaaata----ttagatgataaagttgaagaaagcacggagaaatcagaacaaaaaga-taatgag-------ataaaacagaggagaaaagataaaaacagaggatcaatccaggaggtaaaatgccttatattaacaggaattataaaaagagagagcagagaaaat----ggaaggagattttc-aaagaactaccacataacaaatttcctgaactgaaagacatcagcgtacg-----taagatctcatagagtag---ccaacataatcaatgaggagaccta-gtcaag--acctatcattttgacatctcaagaccctagggaaaaggagaagatcctcaaactttccaggagaaaaacagaacacgta-tgaggg--atg-aaaaattagaatgg---cattgttctcatctgcagcaccggaagctagaggacaaaccaggaacaacgactgcaagacagtaag-agaaaaatcacttccaatctagaattccacatctagccaattctcaattaagcatgaggctaggataaagtcatgctcaaatatacag---gatctcaacatttttgcattttcacgcaccctttctcacaaaactactaaaggatgatgcacacccttaaatgaaggcccactttaagaatcatgaaggcatgggattgggattcaggaaacagaacattcaatagaggacagaaagaaatgaaga--------------------------tgatgatctgccccaggataatagttatgaagccaaccc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1987462 723 - 2117846 -AAAAAGA----TCAGCTGTtaaaggtgaagaaagcatagataattcagaacaaaaaga-taatgagat-----agaacacagaagaaaaaagataaaaacagaggctgaatcaaggatgtaaaatgccttatgttaataggaattataaaaagagagagcagagaaaatggagggaaggaaattttc-agagaactaccacttgacaaatttcctgaactggaa-atgtcggcataca-----taagctctc--agagtag---ccaacataataaatgaagagaccta-gtcaag--acgtatcattttgacatctcaagaccctagggaaaaagagaagatcctccaactttccaagagataaacagaacacacattgaggg--atg-aaaaatcagaatggctccagtcttctcaactgcagcactgcgagctaaaggacaaaccaggaacaatgacttcaagagagtgag--aaaaactcactttcaatctaggattccacacctagccaactctcaattaagcatgaggctagaataaagtcatgctcagatatacag---gatctcaacatttttacattccaatgcaccctttctcacagaactattaaaggatgatgcacgcccttaaatgaaggtccactttaagaatgaggaaggca------agggatttagaaaacagatcattcaacagaggagagaaagaaatgaagatga-----------------tga---tgatcaactgccccagaataacagttatagacct----- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8898494 720 - 16357246 -aaaaaga----tcagatgataaaggcggagaaagcatagataaattgtaacaaaaaaa-----atgac-----agaacacagagaaaaaaagataaaaacagaggctgaatccaggaggtaaaatgccttatgttaataggaattataaaa--agagagcagagaaagtagagggaagaaaattttc-agagaactaccacttaacaaatttcctgaattgaaa-atgtcagcataca-----taagatctcatagagtag---ccaacataataaatgaagagaccta-gtcaag--acgtatcattttgacatcttaagaccctagggaaaaagagaagatcctcccactttccaggagaaaaacagaacacgcattgaggg--atg-aaaaatcagaatggctccagtcttctcaactgcagcactgcaagctagaggacaaaccaggaacaatgacttcaagacagtgagaaaaaaaatcacttttaatctaggattccacatctagccaactctcaattaagaatgaggctagaataaagtcatgctcagatatacag---gttctcaacatttttacactccaatgcaccctttctcacaaaactactaaagcatgatgcacgcccttaaatgaaggcccactttaagaatgaggaaggca------tggga-ttagaaaacagatcactcaacagaggagagaaagaaatgaagatga-----------------tga---tgaacaactgccccagaataacagttacagacct----- i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512383v1 62329 720 + 5963231 -aaaaaga----tcagatgataaaggtgaagaaagcatagataaatcataacaaaaaga-taatgagct-----agaacacagagg-aaaaatataaaaacagaggctgaatccaggaggtaaaatgccttatgttaacaggaattataaaaagagagagcagagaaaatagagggaaggaaattttc-agagaactaccacttgacaaatttcctgaactggaa-atatcggcgtaca-----taagatctcatagagtag---ccaacataataaatg-agagatcta-gtcaag--acgtatcattttgacatctcaagaccctagggaaaaagagaagatcctccaactttccaggagaaaaacagaacacgcattgaggg--atg-aaaaattagaatggctccagtcttctcaactgcagcactgcaagctagaggacaaaccaggaacaatgatttcaagagagggag-aaaaaaatcactttcaatttacgatttcacacctagccaactctcaattaagcatgaggctagaataaagtcatgctcagatatacag---gatctcaacatttttacactccaatgcaccctttctcacaaaactactaaaggatgatgcacacccttaaatgaaggcccactttaagaatgaggaaagca------agggatttagaaaacagatcattcaacagaggag----agaaatgaagatga-----------------tga---tgatcaactgccccagaataacagttatagacct----- i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46129505 683 - 69331447 ataaaaag----ttagatagtagagctgaagagggtgcggagaaatgacaacaaaaagg-cagagagag-----agaatccaggagagaaaagataaagccagagaattaatctaggaggca------ccta-attcacagg-attccag----aaagaacagaaaaaacagagggaaggaaattctc-caagacataacacacaataaacttccccaagtgggagacaggagtttacagatggcaagatctcccagtgggg---gcagcacagtgagtg--gacacctc-ccccgc--ccc----------acaccc----accccagggaaag---------cctccag------aggatcaaggcagcacatgc--tgaggaccatg-----cctagccacc---cagtccccttagtggcagcactagaagctcaaggccaagtcaggagccaggactccaggacaatgag-agaaaa-ttatttcaaatctagaattctatacccaactgaccctcaagtaaacacaagaaggcgacagagacatattctcatacaaggccagatctccaagtattta-actcccacacatgctggtcaggaaagctcctcagggacgatacattccgttaagtgaaggtgcaggctaagaagggtgaagacg------tggggttcaggaaacgg--cattcactgggagaaagaagggagtgacaataa-----------------------tgatgaac-accccaggataacaggtatgaggccgccct i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 112769 716 + 1056298 aaaaaagataagttagatgataaagtttaaaaaagcatggagaaataaggggaaaaggggcaatgaggcagaacacagaaaggagaaaaaaagataaagccaaaggatcaatctgagagatacagtatctaa--tttacagaaattccagaa--agggaaaacagaaagcagagggaaggaaattatc-a-------------tgacaaattttctaaactaaaagacg---------------taagttttcagatggaaaactctagcacaat-aatgaagagatctatttcaaggtaaatatcacggtgaaatctcagaaccctagggaaaatgagaagatcctcaaaccttccaagggaggaaagggtcacata-caaagg--act-gaaaat-----------cagtcctcttaattgcaacaatgaaagctagaggataagtcaggggcaacaacttcaaactatagag--gagaaattatttcaaatctagggttcaatatccagc----tctcaattaagcatgagggtagtataaggacttgttcagatatacaa---gatctcaacaaatttac-ctcctatgcaccctttctcaggaaattactaaag-------ttctctactaaaaaagggcccatactaagaaagatgacaaca------caggactcaggaaacagagcatgcaataaaggaaaggagtATATGACGATGACTAAGAACAAAAGTATATGATGATGATGACACACCCCAGGACAGCAGTTATGGGAAAGCCAT i dasNov3.JH570235 I 530 C 0 e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I e cebCap1.NW_016107750v1 1383060 440 - 1807191 I a score=558054.000000 s hg38.chr22_GL383582v2_alt 119558 56 + 162811 aaagaataaatatcctaactggaAAGTGTGCGTTAGAAAAGATGTGGCCCAAGAAA------- s panTro5.chr22 28899495 56 + 37823149 aaagaataaatatcctaactggaAAGTGTGGGTTAGAAAAGATGTGGCCCAAGAAA------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41174064 56 + 50109623 aaagaataaatatcctaactggaAAGTGTGGGTTAGAAAAGATGTGGCCCAAGAAA------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3196892 56 + 4464012 aaagaataaatatcctaactggaAAGTGTGCGTTAGAAAAGATGTGGCCCAAGAAA------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106692652 56 - 115148730 aaagaataaacatcccaattggaaagtgtgggttagaaaagatgtggcccaagaaa------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84309101 56 + 92844088 aaagaataaatatcccaattggaaagtgtgggttagaaaagatgtggtccaacaaa------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87655470 56 - 96509753 aaagaataaatatcccaattggaaagtgtgggttagaaaagatgtggtccaacaaa------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7152076 56 - 13098629 aaagaataaatatcccaattggaaagtgtgggttagaaaagatgtggtccaacaaa------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4111951 56 - 4483953 aaaggataaataccccaattggaaagtgtgggttagaaaagatgtggtccaacaaa------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24742275 56 + 33263144 aaagaataaatatcccaactggaaagtgtgggttagaaaagatgtggtccaacaaa------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14023280 56 - 14338769 aaaggataaatatcccaattggaaagtgtgggttagaaaagatgtggtccaacaaa------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 961548 56 + 1946073 aaagaataaatatcccaactggaaagtgtgggttagaaaagatgtggtccaagaaa------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1988185 44 - 2117846 aaagaataaatatcccaatt-caaaatgTGGGTTAGAAAAGATGT------------------ i calJac3.chrUn_GL286373 C 0 I 6 s saiBol1.JH378157 8899214 55 - 16357246 aaagaataaatatcccaatt-gaaAGTATGGGTTAGCAATGATGTAGCCCCAAAAA------- i saiBol1.JH378157 C 0 I 11 s cebCap1.NW_016107750v1 1383500 55 - 1807191 AAAGAATAAATATCCCAATT-GAAAGTGTGGGTTAGAAAAGATGTGGCCCAAAAAA------- i cebCap1.NW_016107750v1 I 440 I 68 s aotNan1.NW_018512383v1 63049 55 + 5963231 aaagaataaataacccaatt-gaaAGTGTGGCTTAGAAAAGATGTGGCCTAAAAAA------- i aotNan1.NW_018512383v1 C 0 I 63 s canFam3.chr10 46130188 52 - 69331447 aaagaAGGAACTTCCT-GTTGTCAAGTCTGGATTAGA---GAGGTGGTCCGGTAAA------- i canFam3.chr10 C 0 I 42 s dasNov3.JH570235 113485 63 + 1056298 TCAGAATCAAAACTCTGACTGGAAAGCCAGGGTTAGAAAAGATGTGGTCCAAAGAAATAGGAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=41070.000000 s hg38.chr22_GL383582v2_alt 119614 11 + 162811 CTT-----------------------------------------------------------GAAATATA s panTro5.chr22 28899551 11 + 37823149 CTT-----------------------------------------------------------GAAATATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41174120 11 + 50109623 CTT-----------------------------------------------------------GAAATATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3196948 11 + 4464012 CTT-----------------------------------------------------------GAAATATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106692708 64 - 115148730 ctt--aagcaaatgaatacatgaGTTAGTAATCCTAGAGAAATGAAATGTTTTAGA----AGGGAATATA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84309157 66 + 92844088 ataaaaAGCAAATGAATACATGAGTTAGTAATCCTAGAGAAATTAAATGTTTTAGA----AGGAAATATA i rheMac8.chr10 C 0 I 3 s macFas5.chr10 87655526 66 - 96509753 ataaaaAGCAAATGAATACATGAGTTAGTAATCCTAGAGAAATTAAATGTTTTAGA----AGGAAATATA i macFas5.chr10 C 0 I 3 s macNem1.NW_012012688v1 7152132 66 - 13098629 ataaaaAGCAAATGAACACATGAGTTAGTAATCCTAGAGAAATTAAATGTTTTAGA----AGGAAATATA i macNem1.NW_012012688v1 C 0 I 3 s cerAty1.NW_011999588v1 4112007 66 - 4483953 ataaaaAGCAAATGAATACATGAGTTAGTAATCCTAGAGAAATTAAATGTTTTAGA----AGGAAATATA i cerAty1.NW_011999588v1 C 0 I 3 s chlSab2.chr19 24742331 66 + 33263144 ataaaaAGCAAATGAATACATGAGTTAGTAATCCTAGAGAAATTAAATGTTTTAGA----AGGAAATATA i chlSab2.chr19 C 0 I 3 s manLeu1.NW_012102031v1 14023336 66 - 14338769 ataaaaAGCAAATGAATACATGAGTTAGTAATCCTAGAGAAATTAAATGTTTTAGA----AGGAAATATA i manLeu1.NW_012102031v1 C 0 I 3 s colAng1.NW_012115588v1 961604 66 + 1946073 ataaaaAGCAAATGAATACATGAGTTAGTAATCCTAGAGAAATTAAATTTTTTAGA----AGGAAATACA i colAng1.NW_012115588v1 C 0 I 3 s calJac3.chrUn_GL286373 1988235 11 - 2117846 -----------ATGAACACATG------------------------------------------------ i calJac3.chrUn_GL286373 I 6 I 41 s saiBol1.JH378157 8899280 11 - 16357246 -----------ATCAACACATG------------------------------------------------ i saiBol1.JH378157 I 11 I 41 s canFam3.chr10 46130282 20 - 69331447 --------------------------------------------------CTTAGAAGAGAGGAAATAGA i canFam3.chr10 I 42 I 5 s dasNov3.JH570235 113548 44 + 1056298 -----ATGAAAATAAAAACAT-----------CCCAGAGAAAGGAAAAGTATTACA----AGTA------ i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512383v1 63104 63 + 5963231 I e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I e cebCap1.NW_016107750v1 1383555 68 - 1807191 I a score=69506.000000 s hg38.chr22_GL383582v2_alt 119625 7 + 162811 --------ATAATAT s panTro5.chr22 28899562 7 + 37823149 --------ATAATAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41174131 7 + 50109623 --------ATAATAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3196959 7 + 4464012 --------ATAATAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106692772 7 - 115148730 --------ATAATAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84309226 7 + 92844088 --------ATAGTAT i rheMac8.chr10 I 3 C 0 s macFas5.chr10 87655595 7 - 96509753 --------ATAGTAT i macFas5.chr10 I 3 C 0 s macNem1.NW_012012688v1 7152201 7 - 13098629 --------ATAGTAT i macNem1.NW_012012688v1 I 3 C 0 s cerAty1.NW_011999588v1 4112076 7 - 4483953 --------ATAGTAT i cerAty1.NW_011999588v1 I 3 C 0 s chlSab2.chr19 24742400 7 + 33263144 --------ATAGTAT i chlSab2.chr19 I 3 C 0 s manLeu1.NW_012102031v1 14023405 7 - 14338769 --------ATAGTAT i manLeu1.NW_012102031v1 I 3 C 0 s colAng1.NW_012115588v1 961673 7 + 1946073 --------ATAGTAT i colAng1.NW_012115588v1 I 3 C 0 s calJac3.chrUn_GL286373 1988287 7 - 2117846 --------ATAGTAT i calJac3.chrUn_GL286373 I 41 C 0 s saiBol1.JH378157 8899332 7 - 16357246 --------CTAGTAT i saiBol1.JH378157 I 41 C 0 s aotNan1.NW_018512383v1 63167 7 + 5963231 --------ATAGTAT i aotNan1.NW_018512383v1 I 63 C 0 s canFam3.chr10 46130307 7 - 69331447 --------ATAGTAT i canFam3.chr10 I 5 C 0 s dasNov3.JH570235 113592 15 + 1056298 ATAAGATCAGAGTAT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I e cebCap1.NW_016107750v1 1383555 68 - 1807191 I a score=82153.000000 s hg38.chr22_GL383582v2_alt 119632 14 + 162811 GCTTCATAAGCATT s panTro5.chr22 28899569 14 + 37823149 GCTTCATAAGCATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41174138 14 + 50109623 GCTTCATAAGCATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3196966 14 + 4464012 GCTTCGTAAGCATT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106692779 10 - 115148730 GCTTCGT----ATT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84309233 12 + 92844088 GCTTCATAAG--TT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87655602 12 - 96509753 GCTTCATAAG--TT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7152208 12 - 13098629 GCTTCATAAG--TT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4112083 12 - 4483953 GCTTCATCAG--TT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24742407 12 + 33263144 GCTTCATAAG--TT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14023412 12 - 14338769 GCTTCATAAG--TT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 961680 12 + 1946073 GCTTCATAAG--TT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1988294 14 - 2117846 GCTTCCTAAGTATT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8899339 11 - 16357246 GTGTCCTA---ATT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1383623 14 - 1807191 GCTTCATAAGTATT i cebCap1.NW_016107750v1 I 68 C 0 s aotNan1.NW_018512383v1 63174 14 + 5963231 GCTTCATAAGTATT i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46130314 10 - 69331447 ACTTTATG----TT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 113607 14 + 1056298 ACTTCATGAGTATT i dasNov3.JH570235 C 0 I 125 e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=50644.000000 s hg38.chr22_GL383582v2_alt 119646 5 + 162811 ATACA s panTro5.chr22 28899583 5 + 37823149 ATACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41174152 5 + 50109623 ATACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3196980 5 + 4464012 ATACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106692789 5 - 115148730 ATACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84309245 5 + 92844088 ATACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87655614 5 - 96509753 ATACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7152220 5 - 13098629 ATACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4112095 5 - 4483953 ATACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24742419 5 + 33263144 ATACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14023424 5 - 14338769 ATACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 961692 5 + 1946073 ATACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1988308 5 - 2117846 ATAGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8899350 5 - 16357246 ATAGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1383637 5 - 1807191 ATAGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 63188 5 + 5963231 ATAGA i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46130324 5 - 69331447 ACAGA i canFam3.chr10 C 0 I 37 s dasNov3.JH570235 113746 5 + 1056298 gtaga i dasNov3.JH570235 I 125 C 0 e mm10.chr15 82848423 2899 + 104043685 I e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=93507.000000 s hg38.chr22_GL383582v2_alt 119651 9 + 162811 TTTCAAAAA s panTro5.chr22 28899588 9 + 37823149 TTTCAAAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41174157 9 + 50109623 TTTCAAAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3196985 9 + 4464012 TTTCAAAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106692794 9 - 115148730 CTTCAAAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84309250 9 + 92844088 TTTCAAAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87655619 9 - 96509753 TTTCAAAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7152225 9 - 13098629 TTTCAAAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4112100 9 - 4483953 TTTCAAAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24742424 9 + 33263144 TTTCAAAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14023429 9 - 14338769 TTTCAAAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 961697 9 + 1946073 TTTCAAAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1988313 9 - 2117846 TTTGAAAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8899355 9 - 16357246 TTTCAAAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1383642 9 - 1807191 TTTCAAAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 63193 5 + 5963231 TTTCA---- i aotNan1.NW_018512383v1 C 0 C 0 s mm10.chr15 82851322 9 + 104043685 TTTCATAGA i mm10.chr15 I 2899 C 0 s canFam3.chr10 46130366 9 - 69331447 TAACACAAA i canFam3.chr10 I 37 I 18 s dasNov3.JH570235 113751 9 + 1056298 tgtctagaa i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36320689 1964 - 42659167 I e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=72238.000000 s hg38.chr22_GL383582v2_alt 119660 11 + 162811 ATGAAAA-------------------------------------------------------------------------------------ACGA s panTro5.chr22 28899597 11 + 37823149 ATGAAAA-------------------------------------------------------------------------------------ACGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41174166 11 + 50109623 ATGAAAA-------------------------------------------------------------------------------------ACGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3196994 11 + 4464012 ATGAAAA-------------------------------------------------------------------------------------ACGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106692803 11 - 115148730 ATGAAAA-------------------------------------------------------------------------------------ACGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84309259 11 + 92844088 ATGAAAA-------------------------------------------------------------------------------------ATGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87655628 11 - 96509753 ATGAAAA-------------------------------------------------------------------------------------ATGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7152234 11 - 13098629 ATGAAAA-------------------------------------------------------------------------------------ATGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4112109 11 - 4483953 ATGAAAA-------------------------------------------------------------------------------------ATGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24742433 11 + 33263144 ACGAAAA-------------------------------------------------------------------------------------ATGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14023438 11 - 14338769 ATGAAAA-------------------------------------------------------------------------------------ATGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 961706 11 + 1946073 ATGAAAA-------------------------------------------------------------------------------------ATGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1988322 11 - 2117846 ATGAAAA-------------------------------------------------------------------------------------ATGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8899364 11 - 16357246 ATAAAAA-------------------------------------------------------------------------------------ATGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1383651 11 - 1807191 ATGAAAA-------------------------------------------------------------------------------------ATGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 63198 8 + 5963231 ---AAAA-------------------------------------------------------------------------------------ATGA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36322653 7 - 42659167 atgaaaa----------------------------------------------------------------------------------------- i otoGar3.GL873526 I 1964 C 0 s mm10.chr15 82851331 11 + 104043685 CAAAAAC-------------------------------------------------------------------------------------ATGA i mm10.chr15 C 0 C 0 s canFam3.chr10 46130393 96 - 69331447 GTGGAGAAACAGAGGGAAGCAGCCAGGCATGGGGCAGGTTCCAGGGAGGTAGAGCAGGGGGAGCCCGCCTTGGTACGAGGTGCTGCACGGACACGA i canFam3.chr10 I 18 C 0 s dasNov3.JH570235 113760 11 + 1056298 atgaaaa-------------------------------------------------------------------------------------aaaa i dasNov3.JH570235 C 0 I 137 e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=95930.000000 s hg38.chr22_GL383582v2_alt 119671 14 + 162811 TTTTA------GAA-----------GTCTAT----------------------------------------------- s panTro5.chr22 28899608 14 + 37823149 TTTTA------GAA-----------GTCTAT----------------------------------------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41174177 14 + 50109623 TTTTA------GAA-----------GTCTAT----------------------------------------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3197005 14 + 4464012 TTTTA------GAA-----------GTCTAT----------------------------------------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106692814 14 - 115148730 TTTTA------GAA-----------GTCTAT----------------------------------------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84309270 14 + 92844088 TTTTA------GAA-----------GTCTAC----------------------------------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87655639 14 - 96509753 TTTTA------GAA-----------GTCTAC----------------------------------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7152245 14 - 13098629 TTTTA------GAA-----------GTCTAC----------------------------------------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4112120 14 - 4483953 TTTTA------GAA-----------GTCTAC----------------------------------------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24742444 14 + 33263144 TTTTA------GAA-----------GTCTAC----------------------------------------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14023449 14 - 14338769 TTTTA------GAA-----------GTCTAC----------------------------------------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 961717 14 + 1946073 TTTTC------GAA-----------GTCTAC----------------------------------------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1988333 14 - 2117846 TTTTA------GAA-----------GTCAAC----------------------------------------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8899375 14 - 16357246 TTTTA------GAA-----------GTCTAC----------------------------------------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1383662 14 - 1807191 TTTTA------GAA-----------GTCTAC----------------------------------------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 63206 14 + 5963231 TTTTA------GAA-----------GTCTAC----------------------------------------------- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36322660 10 - 42659167 ---ta------aaa-----------GTTAA------------------------------------------------ i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82851342 16 + 104043685 CTTTACTGATGAAA-----------AT--------------------------------------------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46130489 25 - 69331447 CTCTA------TAACCTAGAAACACGTCTTA----------------------------------------------- i canFam3.chr10 C 0 I 18 s dasNov3.JH570235 113908 60 + 1056298 -ttta------aaa-----------agctttacagcacttacatgactgtaacctatgggcatgtcgtagcaataaaa i dasNov3.JH570235 I 137 C 0 e proCoq1.NW_012136747v1 5114434 3695 - 6317780 I e micMur3.chr7 5749259 2653 + 108171978 I a score=118122000.000000 s hg38.chr22_GL383582v2_alt 119685 5921 + 162811 ACAA-----ATCTTCCAAATTACCTATTTCATTTTCTGTCCAT---CACATGGGCATAGGCACTT-TAATTTGGAGGAATAATCATG-TGACATGTAA---------------GAACAAAA--------------AC------ATGCAAGAAAAGGAACCAA----ATGAAATAA--AAATCC--------------CAAGCTGGTA--AGAGATTTCTCATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACGGAGGGCTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCAGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGGCCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCGGCCAGgcttctctgctcctt------ctgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAGCCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCTGTGGCCCTCTTAGGAGGTGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGCAGCATAAAGGACGAGGCCGGGAGCGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTGCCCCTCACTAATTTGGTCTGTTCTTCTTCCTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTTACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGCATCAGTTTTATCCAGTGGCTGGGTGGCATATTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTCGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGGGGTGGAG------------GCGGTGGCTGCTGCTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTCTTTCCTGATGGGAAATATCCCTTTGGAGGGAAACCCTCTTGCTTCGGTGAAATCGTCACTGTATCGTTCTCCTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCCCACTGGAGGTACATTCTTTGAGTCTGGAAAGATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGTTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCGGCAGTAACTGTTTCTGCATGTGTCTCTGTCTTCACTTTGTCATCCACGCTGCCACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCTACGTGCAACTCCTGGTTTGCTGGACTGACTAGGTCCGAAGCCACCTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGGAGGACCACTCTTCAAAGACAGTATATCATCAAGCGTAACCGTGTCTCCCCCAGCCTCCGCACTGTTCGAAGATGCGCTCCTCCTAATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAATCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGGGTAACAGCAGGGCAGTTTCTACTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGATAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCTTTTGATGAGTGAAGGAGGCGACCTTTATCTTCAGTGCTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGAACACGCCTCCTCATGATTAAGGGGTTTTGAGAAGAATGATCCTCCTGGCCTGGAAGTCTCAGCATAACACTACCAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGCGGCCCATACCTTTTTTGACTGGACATTCCTGGAGGACCGCTGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAACTTCTGGGAGCCATGCTTTAATTCCATGCCCTTGTTAGGCAGACCATCACTAGACATTAGGCAGCGCCCAGCCTCCTGGGCACTGGGGTCATGGTAAGTCCCCACTGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAGAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATTACTCCCTGAGCAGAACCGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGCGTTAGGGTCCCCATAAGCATGAGCCCGAGTATTTGCATGATAAGCAGAGGCCAGGGTTTCTGAGTTGGGAGAAAAGGGAGTGTGTAAAGAACTCCGGTTAGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATTTTCAATTTTTCTGCAAAGTCATGATATTGAGAAGGGGACCGACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGGGACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGCGGGCCATAGTCTGAAAGGGAATCATGGGTTGCTGCTCCAGGGCTGGCATTGCCGCGGTAAGACTCATGCTTGATGCTAGGAGGATGGCA--GTGGTCTCCAGATTTCTTGTTGTTGAAACTAGCTTGAGATTTAGACTGTTCAAAGTCTTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTGGTTTCCATGGACACCAAACCACCAGGAAGAATGACCGACTGACTTAAAGTTGGATTGAGACGGTCATTCCTCCCAATTCTGGTGTCGGCACTCATGTGTCCCAGTGAGTGAGCCCCTGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGCTCATGTGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGTGGTTCCTTCTAGGCTACCAGCCATCCCCTGATGCTCTTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGCAGGAGGCTTGGGAATTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCTCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACGGCTGACCCGAAACTATCTTTGTAACTATAGCGCAGACTTCCAGGAGATTTGCTAGGCTCAGTTCTGCTCGTAAAACCAGGGCCCGCTGCAGAGTGGCCACTCTGGCCATTTCCTTCTCCATTATGGTTGGAG---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGGAGGCTCTGGCTGGGGAAGTGATGCATGACTGGTTTCCTTTGCCCCACCATTGCTAGGTGGCCTTTGAGTGGCTGCAGGATCATCCTCTTGGGAGCCTTTATCTTGTCCACCAGGCTTTTCTACCCGACCTGTCATGGCTTCCCGGGAGACAATCACCCCAACAGTCTTCTCATTAACCTTTGGGTTCCCGTCGGATGACAATGGCATGTCCTTAGCGCCTGGTGAGGTGGCCTCTTCTCTTGCGGCAGGACTAGCATTGAGTCTGGGGGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCAGAGGCTCCACCCTTGTAGGTGGTGTCAGAGCTGGTGCTCTGGCCACTTAGTTGCCGCACTCTCTCGCCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAATGACTCTGCCATAGGGGACTTCAGCTGTTCTTCAGGTTGTGAGGAGCCTTCAGAATTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCAGCATGAGAATTAGGACTGGGCATCATTGATGGGGTTGGACTGAGTTGAGGCATTAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGAGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGCTGGTTGTACTGCCCCACTTGGCTTTGCAGGGGCAGCTTGGTG---GCAGCGTTAGTATACTGCATCACATGCTGAGAAGGG------tgttgttgttgctgcg------------------------------------------------gttgctgctgctgctgcccctgttgG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTGTAATTGGATTGTGTTCCATAAGCCTGTGCATTAGAACCCACATTGTGTCCTTCATACTGAGATCCAGCATTCACATTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaAGCAGAAGACTGATAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGTTGGCCAGTGGCCTGTGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAActgctggact------------------------------------------tgctgctgc------tgctgctggctggaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCAGTGTAATCCTGCTGATAATGTGACACACCGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGTCACGGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCGCTAGCCATCGCTGCCGCAGCAGCTGCTGCTCCTCGTCGTccaccaccactgcca---ctgccactgctgccactactgccacCTGTACCTCCAAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTAGCCGGGATGAGCCGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG-------AA---GAAAGAAAAACATTAGACACGCATCTCCTTGGTACAAATAAAATCAAGTCTAGATGA s panTro5.chr22 28899622 5933 + 37823149 ACAA-----ATCTTCCAAATTACCTATTTCATTTTCTGTCCAT---CACATGGGCATAGGCACTT-TAATTTGGAGGAATAATCATG-TGACATGTAA---------------GAACAAAA--------------AC------ATGCAAGAAAAGGAACCAA----ATGAAATAA--AAATCC--------------CAAGCTGGTA--AGAGATTTCTCATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACGGAGGGCTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCAGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGGCCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCGGCCAGgcttctctgctcctt------ctgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAGCCATTAGAAGCACTTTTGTGCCGTACTTTAACTTTGCTCTGCATTTCTGTGGCCCTCTTAGGAGGTGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGCAGCATAAAGGACGAGGCCGGGAGCGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTGCCCCTCACTAATTTGGTCTGTTCTTCTTCCTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTTACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGCATCAGTTTTATCCAGTGGCTGGGTGGCATATTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTCGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGGGGTGGAG------------GCGGTGGCTGCTGCTGCTGTTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTCTTTCCTGATGGGAAATATCCCTTTGGAGGGAAACCCTCTTGCTTCGGTGAAATCGTCACTGTATCGTTCTCCTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATAAGCCCACCGGAGGTACATTCTTTGAGTCTGGAAAGATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGTTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCGGCAGTAACTGTTTCTGCATGTGTCTCTGTCTTCACTTTGTCATCCACGCTGCCACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCTACGTGCAACTCCTGGTTTGCTGGACTGACTAGGTCCGAAGCCACCTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGGAGGACCACTCTTCAAAGACAGTATATCATCAAGCGTAACCGTGTCTCCCCCAGTCTCCGCACTGTTCGAAGATGCACTCCTCCTAATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAATCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGGGTAACAGCAGGGCAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGATAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCTTTTGATGAGTGAAGGAGGCGACCTTTATCTTCAGTGCTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGAACACGCCTCCTCATGATTAAGGGGTTTTGAGAAGAATGATCCTCCTGGCCTGGAAGTCTCAGCATAACACTACCAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGCGGCCCATACCTTTTTTGACTGGACATTCCTGGAGGACCGCTGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAACTTCTGGGAGCCATGCTTTAATTCCATGCCCTTGTTAGGCAGACCATCACTAGACATTAGGCAGCGCCCAGCCTCCTGGGCACTGGGGTCATGGTAAGTCCCCACTGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAGAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATTACTCCCTGAGCAGAACCGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGCGTTAGGGTCCCCATAAGCATGAGCCCGAGTATTTGCATGATAAGCAGAGGCCAGGGTTTCTGAGTTGGGAGAAAAGGGAGTGTGTAAAGAACTCCGGTTAGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATTTTCAATTTTTCTGCAAAGTCATGATATTGAGAAGGGGACCGACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGGGACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGCGGGCCGTAGTCTGAAAGGGAATCATGGGTCGCTGCTCCAGGGCTGGCATTGCCGCGGTAAGACTCATGCTTGATGCTAGGAGGATGGCA--GTGGTCTCCAGATTTCTTGTTGTTGAAACTAGCTTGAGATTTAGACTGTTCAAAGTCTTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTGGTTTCCATGGACACCAAACCACCAGGAAGAATGACCGACTGACTTAAAGTTGGATTGAGACGGTCATTCCTCCCAATTCTGGTGTCGGCACTCATGTGTCCCAGCGAGTGAGCCCCTGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGCTCATGTGCTGATGATTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGTGGTTCCTTCTAGGCTACCAGCCATCCCCTGATGCTCTTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGCAGGAGGCTTGGGAATTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCTCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACGGCTGACCCGAAACTATCTTTGTAACTATAGCGCAGACTTCCAGGAGATTTGCTAGGCTCAGTTCTGCTCGTAAAAACAGGGCCCGCTGCAGAGTGGCCACTCTGGCCATTTCCTTCTCCATTATGGTTGGAG---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGGAGGCTCTGGCTGGGGAAGTGATGCATGACTGGTTTCCTTTGCCCCACCATTGCTAGGTGGCCTTTGAGTGGCTGCAGGATCATCCTCTTGGGAGCCTTTATCTTGTCCACCAGGCTTTTCTACCCGACCTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTAACCTTTGGGTTCCCGTCGGATGACAATGGCATGTCCTTAGCGCCTGGTGAGGTGGCCTCTTCTCTTGCGGCAGGACTAGCATTGAGTCTGGGGGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCAGAGGTTCCACCCTTGTAGGTGGTGTCAGAGCTGGTGCTCTGGCCACTTAGTTGCCGCACTCTCTCGCCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAATGACTCTGCCATAGGGGACTTCAGCTGTTCTTCAGGTTGTGAGGAGCCTTCAGAATTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCAAGTCCAAACCCTTTGAAGCCTGCAGCATGAGAATTAGGACTGGGCATCATTGATGGGGTTGGACTGAGTTGAGGCATTAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGAGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGCTGGTTGTACTGCCCCACTTGGCTTTGCAGGGGCAGCTTGGTG---GCAGCGTTAGTATACTGCATCACATGCTGAGAAGGGtgttgttgttgttgttgctgct------------------------------------------------gttgctgctgctgctgcccctgttgG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTGTAATTGGATTGTGTTCCATAAGCCTGTGCATTAGAACCCACATTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaAGCAGAAGACTGATAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGTTGGCCAGTGGCCTGTGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAActgctggact---------------------------------------tgctgctgctgc------tgctgctggctggaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCAGTGTAATCCTGCTGATAATGTGACACACCGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGTCACGGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCGCTAGCCATCGCTGCCGCAGCAGCTGCTGCTCCTCGTCGTccaccaccactgcca---ctgccactgctgccactactgccacCTGTACCTCCAAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTAGCCGGGATGAGCCGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG-------AA---GAAAGAAAAACATTAGACACGCATCTCCTCGGTACAAATAAAATCAAGTCTAGATGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41174191 5927 + 50109623 ACAA-----ATCTTCCAAATTACCTATTTCATTTTCTGTCCAT---CACATGGGCATAGGCACTT-TAATTTGGAGGAATAATCATG-TGACATGTAA---------------GAACAAAA--------------AC------ATGCAAGAAAAGGAACCAA----ATGAAATAA--AAATCC--------------CAAGCTGGTA--AGAGATTTCTCATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACGGAGGGCTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCAGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGGCCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCGGCCAGgcttctctgctcctt------ctgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAGCCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCTGTGGCCCTCTTAGGAGGTGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGCAGCATAAAGGACGAGGCCGGGAGCGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTGCCCCTCACTAATTTGGTCTGTTCTTCTTCCTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTTACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGCATCAGTTTTATCCAGTGGCTGGGTGGCATATTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTCGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGGGGTGGAG------------GCGGTGGCTGCTGCTGCTGTTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTCTTTCCTGATGGGAAATATCCCTTTGGAGGGAAACCCTCTTGCTTCGGTGAAATCGTCACTGTATCGTTCTCCTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATAAGCCCACCGGAGGTACATTCTTTGAGTCTGGAAAGATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGTTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCGGCAGTAACTGTTTCTGCATGTGTCTCTGTCTTCACTTTGTCATCCACGCTGCCACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCTACATGCAACTCCTGGTTTGCTGGACTGACTAGGTCCGAAGCCACCTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGGAGGACCACTCTTCAAAGACAGTATATCATCAAGCGTAACCGTGTCTCCCCCAGTCTCCGCACTGTTCGAAGATGCACTCCTCCTAATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAATCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGGGTAACAGCAGGGCAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGACAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCTTTTGATGAGTGAAGGAGGCGACCTTTATCTTCAGTGCTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGAACACGCCTCCTCATGATTAAGGGGTTTTGAGAAGAATGATCCTCCTGGCCTGGAAGTCTCAGCATAACACTACCAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGCGGCCCATACCTTTTTTGACTGGACATTCCTGGAGGACCGCTGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAACTTCTGGGAGCCATGCTTTAATTCCATGCCCTTGTTAGGCAGACCATCACTAGACATTAGGCAGCGCCCAGCCTCCTGGGCACTGGGGTCATGGTAAGTCCCCACTGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAGAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATTACTCCCTGAGCAGAACCGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGCATTAGGGTCCCCATAAGCATGAGCCCGAGTATTTGCATGATAAGCAGAGGCCAGGGTTTCTGAGTTGGGAGAAAAGGGAGTGTGTAAAGAACTCCGGTTAGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATTTTCAATTTTTCTGCAAAGTCATGATATTGAGAAGGGGACCGACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGGGACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGCGGGCCGTAGTCTGAAAGGGAATCATGGGTTGCTGCTCCAGGGCTAGCATTGCCGCGGTAAGACTCATGCTTGATGCTAGGAGGATGGCA--GTGGTCTCCAGATTTCTTGTTGTTGAAACTAGCTTGAGATTTAGACTGTTCAAAGTCTTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTGGTTTCCATGGACACCAAACCACCAGGAAGAATGACCGACTGACTTAAAGTTGGATTGAGACGGTCATTCCTCCCAATTCTGGTGTCGGCACTCATGTGTCCCAGCGAGTGAGCCCCTGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGCTCATGTGCTGATGATTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGTGGTTCCTTCTAGGCTACCAGCCATCCCCTGATGCTCTTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGAAGGAGGCTTGGGAATTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCTCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACGGCTGACCCGAAACTATCTTTGTAACTATAGCGCAGACTTCCAGGAGATTTGCTAGGCTCAGTTCTGCTCGTAAAAACAGGGCCCGCTGCAGAATGGCCACTCTGGCCATTTCCTTCTCCATTATGGTTGGAG---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGGAGGCTCTGGCTGGGGAAGTGATGCATGACTGGTTTCCTTTGCCCCACCATTGCTAGGTGGCCTTTGAGTGGCTGCAGGATCATCCTCTTGGGAGCCTTTATCTTGTCCACCAGGCTTTTCTACCCGACCTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTAACCTTTGGGTTCCCGTCGGATGACAATGGCATGTCCTTAGCGCCTGGTGAGGTGGCCTCTTCTCTTGCGGCAGGACTAGCATTGAGTCTGGGGGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCAGAGGCTCCACCCTTGTAGGTGGTGTCAGAGCTGGTGCTCTGGCCACTTAGTTGCCGCACTCTCTCGCCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAATGACTCTGCCATAGGGGACTTCAGCTGTTCTTCAGGTTGTGAGGAGCCGTCAGAATTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCAAGTCCAAACCCTTTGAAGCCTGCAGCATGAGAATTAGGACTGGGCATCATTGATGGGGTTGGACTGAGTTGAGGCATTAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGAGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGCTGGTTGTACTGCCCCACTTGGCTTTGCAGGGGCAGCTTGGTG---GCAGCGTTAGTATACTGCATCACATGCTGAGAAGGG------tgttgttgttgctgct------------------------------------------------gttgctgctgctgctgcccctgttgG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTGTAATTGGATTGTGTTCCATAAGCCTGTGCATTAGAACCCACATTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaAGCAGAAGACTGATAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGTTGGCCAGTGGCCTGTGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAActgctggact---------------------------------------tgctgctgctgc------tgctgctggctggaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCAGTGTAATCCTGCTGATAATGTGACACACCGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGTCACGGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCGCTAGCCATCGCTGCCGCAGCAGCTGCTGCTCCTCGTCGTccaccaccactgcca---ctgccactgctgccactactgccacCTGTACCTCCAAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTAGCCGGGATGAGCCGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG-------AA---GAAAGAAAAACATTAGACACGCATCTCCTCGGTACAAATAAAATCAAGTCTAGATGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3197019 5926 + 4464012 ACAA-----ATCTTCCAAATTACCTATTTCATTTTCTGTCCAT---CACATGGGCATAGGCACTT-TAATTTGGAGGAATAATCATG-TGACATGTAA---------------GAACAAAA--------------AC------ATGCAAGAAAAGGAACCAA----ATGAAATAA--AAATCC--------------CAAGCTGGTA--AGAGATTTCTCATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACGGAGGGCTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCAGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGGCCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCGGCCAGgcttctctgctcctt------ctgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAGCCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCTGTGGCCCTCTTAGGAGGTGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGCAGCATAAAGGACGAGGCCGGGAGTGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTGCCCCTCACTAATTTGGTCTGTTCTTCTTCCTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTTACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGCATCAGTTTTATCCAGTGGCTGGGTGGCATATTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTCGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGCGGGGGCTGAGGGGGTGGAG------------GCGGTGGCTGCTGCTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTCTTTCCTGATGGGAAATATCCCTTTGGAGGGAAACCCTCTTGTTTCGGTGAAATCGTCACTGTATCATTCTCCTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCCCCCTGGAGGTACATTCTTTGAATCTGGAAAGATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGTTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCGGCAGTAACTGTTTCTGCATGTGTCTCTGTCTTCACTTTGTCATCCACGCTGCCACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCTATGTGCAACTCCTGGTTTGCTGGACTGACTAGGTCCGAAGCCACCTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGGAGGACCACTCTTCAAAGACAGTATATCATCAAGCGTAACCGTGTCTCCCCCAGCCTCCGCACTGTTCGAAGATGCGCTCCTCCTAATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAATCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGGGTAACAGCAGGGCAGTTCCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGATAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCTTTTGATGAGTGAAGGAGGCGACCTTTATCTTCAGTGCTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGAACACGCCTCCTCATGATTAAGGGGTTTTGAGAAGAATGATCCTCCTGGCCTGGAAGTCTCAGCATAACACTACTAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGCGGCCCATACCTTTTTTGACTGCACATTCCTGGAGGACCGCTGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAACTTCTGGGAGCCATGCTTTAATTCCATGCCCTTGTTAGGCAGACCATCACTAGACATTAGGCAGCGCCCAGCCTCCTGGGCACTGGGGTCATGGTAAGTCCCCACTGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAGAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATTACTCCCTGAGCAGAACCACTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGTGTTAGGGTCCCCATAAGCATGAGCCCGAGTATTTGCATGATAAGCAGAGGCCAGGGTTTCTGAGTTGGGAGAAAAGGGAGTGTGTAAAGAACTCCGGTTAGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATTTTCAATTTTTCTGCAAAGTCATGATATTGAGAAGGGGACCGACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGGGACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGCGGGCCGTAGTCTGAAAGGGAATCATGGGTCGCTGCTCCAGGGCTGGCATTGCCGCGGTAAGACTCATGCTTGATGCTAGGAGGATGGCA--GTGGTCTCCAGATTTCTTGTTGTTGAAACTAGCTTGAGATTTAGACTGTTCAAAGTCTTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTGGTTTCCATGGACACCAAACCACCAGGAAGAATGACCGACTGACTTAAAGTTGGATTGAGACGGTCATTCCTCCCAATTCTGGTGTCGGCACTCATGTGTCCCAGTGAGTGAGCCCCTGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGCTCATGCGCTGACGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGTGGTTCCTTCTAGGCTACCAGCCATCCCCTGATGCTCTTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGCAGGAGGCTTGGGAATTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCTCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTCCGTGGCACGGCTGACCCGAAACTATCTTTGTAACTATAGCGCAGACTTCCAGGAGATTTGCTAGGCTCAGTTCTGCTCGTAAAACCAGGGCCCGCTGCAGAGTGGCCACTCTGGCCATTTCCTTCTCCATTATGGTTGGAG---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGGAGGCTCTGGCTGGGGAAGTGATGCATGACTGGTTTCCTTTGCCCCACCATTGCTAGGTGGCCTTTGAGTGGCTGCAGGATCATCCTCTTGGGAGCCTTTATCTTGTCCACCAGGCTTTTCTACCCGACCTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTAACCTTTGGGTTCCCGTCGGATGACAATGGCATGTCCTTAGCGCCTGGTGAGGTGGCCTCTTCTCTTGTGGCAGGACTAGCATTGAGTCTGGGGGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCAGAGGTTCCACCCTTGTAGGTGGTGTCAGAGCTGGTGCTCTGGCCACTTAGTTGCCGCACTCTCTCGCCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAATGACTCTGCCATAGGGGACTTCAGCTGTTCTTCAGGTTGTGAGGAGCCTTCAGAATTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAATCGCTTTTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCAGCATGAGAATTAGGACTGGGCATCATTGATGGGGTTGGACTGAGTTGAGGCATTAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGAGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGCTGGTTGTACTGCCCCACTTGGCTTTGCAGGGGCAGCTTGGTG---GCAGCGTTAGTATACTGCATCACATGCTGAGAAGGG------tgttgttgttgctgcg------------------------------------------------gttgctgctgctgctgcccctgttgG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTGTAATTGGATTGTGTTCCATAAGCCTGTGCATTAGAACCCACATTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaAGCAGAAGACTGATAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGTTGGCCGGTGGCCTGTGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAActgctggact------------------------------------------tgctgctgc------tgctgctggctggaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCAGTGTAATCCTGTTGATAATGCGACACACCGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCTAAAGCTGCTCCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGTCACGGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCGCTAGCCATCGCTGCCGCAGCAGCTGCTGCTCCTCGTCGTccaccaccactgcca---ctgccactgctgccactactgccacctgcacctccaAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCCTCTAGCCGGGATGAGCCGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG--AAGAAAA---GAAAGAAAAACATTAGACACGCATCTCCTCGGTACAAATAAAATCAAGTCTAGATGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106692828 5913 - 115148730 ACAA-----ATCTTCCAAATTACCTATTTCATTTTCTGTCCAT---CACATGGGCATAGGCACTT--------------TAATCATG-TGACATGTAA---------------GAACAAAA--------------AC------ATGGGAGAAAAGGAACCAA----ATGAAATAA--AAATCC--------------CAAGCTGTTA--AGAGATTTCTCATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTTCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACGGAGGGTTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCGGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGATAGGGACCGAGGGCCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGTGGCCAGGctcctctgctcctt------ctgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAGCCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCTGTGGCCCTCTTAGGAGGTGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGCAGCATAAAGGACGAGGCCGGGAGCGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTGCCCCTCACTAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTTACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGCATCGGTTTTATCCAGTGGCTGGGTGGCATACTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTCGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGGGGCGGAG------------GCGGCGGCTGCTGCTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTCTTTCCTGATGGGAAATATCCCTTTGGAGGGAAACCCTCTTGCTTCGGTGAAATCGTCACTGTATCGTTCTCCTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCCCACTGGAGGTACATTCTTTGAGTCTGGAAAGATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGTTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCCGCAGTAACTGTTTCTGCATGTGTCTCTGTCTTCACTTTGTCATCCCCACTGCCACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCAATGTGCAACTCCTGGTTTGCTGGACTGACTAGGTCAGAAGCCGCCTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGGAGGACCACTCTTCAAAGACAGTATATCATCAAGTGTAACCGTGTCTCCCCCAGCCTCCGTGCTGTTCGAAGATGCGCTCCTCCTAATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAATCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGGGTAACAGCAGGGCAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGATAGACTTAATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCTTTTGATGAGTGAAGGAGGCGACCTTTATCTTCAGTGCTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGAACACGCCTCCTCATGATTAAAGGGTTTTGAGAAGAATGATCCTCCTGGCCTGGAAGTCTCAGCATAACATTACTAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGAGGCGGCCCATACCTTTTTTGACTGGACATTCCTGGAGGACCACTGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAACTTCTGGGAGCCGTGCTTTAATTCCATACCCTTGTTAGGCAGACCATCACTAGACATTAGGCAGCGCCCAGCCTCCTGGGCGCTGGGGTCATGGTAAGTCCCTACTGGTGGACCATACATCATACCATCTTTGTCATTTTTCAGAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTCGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATTACTCCCTGAGCAGAACTGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAGTTCAAACCTGCATTAGGGTCCCCATAAGCATGAGCCCGAGTATTTGCGTGATAAGCAGAGGCCAGGGTTTCTGAGTTGGGAGAAAAGGGAGCGTGTAAAGAACTCCGGTTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACAGTTTCAA-TTTTCTGCAAAGTCATGATATTGAGAAGGGGACCGACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGGGACCCGCCGCATTGGCGTAGGTCTGCTGTCT--TTGTGGGCCGTAGTCTGAAAGGGAATCATGGGTCGCTGCTCCAGGGCTGGCATTGCCACGGTAAGACTCATGCTTGATGCTAGGAGGATGGCA--GTGGTCTCCAGATTTCTTGTTGTTGAAACTAGCTTGAGATTTAGACTGTTCAAAGTCTTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTGGTTTCCATGGACACCAAACCACCAGGAAGAATGACCGACTGACTTAAAGTTGGATTGAGACGGTCATTCCTCCCAATTCTGGTGTCGGCACTCATGTGTCCCAGTGAGTGAGCCCCTGGGTCCCTGACAATCTGCCTAAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGCTCATGGGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGTGGTTCCTTCTAGGCTACCAGCCATCCCCTGATGCTCTTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCTTGAAGCACTTCCTGCAGAAGGCTTGGGAATTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCTCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACAGCTGACCCGAAACTATCTTTGTAACTATAGCGCAGACTTCCGGGAGATTTGCTAGGCTCAGTTCTGCTTGTAAAACCAGGGCCCGCTGCAGAGTGGCCACTCTGGCCATTTCCTTCTCCATTATGGTTGGAG---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGGAGGCTCTGGCTGGGGAAGTGATGCATGACTGGTTTCCTTTGCCCCACCATTGCTAGGTGGCCTTTGAGTGGCTGCAGGATCATCCTCTTGGGAGCCTTTATCTTGTCCACCAGGTTTTTCTACCCGACCTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTAACCTTTGGGTTCCCGTCAGATGACAATGGCATGTCCTTAGCGCCTGGTGAGGTGGCCTCTTCTCTTGCGGCGGGACTAGCATTGAGTCTGGGGGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCAGAGGCTCCACCCTTGTAGGTGGTGTCAGAGCTGGTGCTCTGGCCACTTAGTTGCCGCACTCTCTCACCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAATGACTCTGCCATAGGGGACTTCAGCTGTTCTTCAGGTTGTGAGGAGCCTTCAGAATTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCGGCATGAGAATTAGGACTGGGCATCATTGATGGGGTTGGACTGAGTTGAGGCATTAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGAGAAGGGTTAGAAATGGGGCTGAAATTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGCTGGTTGTACTGCCCCACCTGGCTTTGCAGGGGCAGCTTGGTG---GCAGCGTTAGTATACTGCATCACATGCTGAGAAGGG------tgttgttgctgctgcg------------------------------------------------gttgctgctgctgctgcccctgttgG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTGTAATTGGATTGTGTTCCATAAGCCTGTGCATTAGAACCCACATTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaTGCAGAAGACTGATAGTGTTGGCCAAACTGGCCCACTCTTAACTGGTAACCAGCAGCAGAAGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGCTTGGCCAGTGGCCTGTGGCAGGGGCTGGTGGGACTGGTAAAgctgctgtctcaactgctggact------------------------------------------tgctgctgc------tgctgctggctggaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAATGCGACACACCGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTGCTCCCTTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGTCACAGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCGCTAGCCATcgctgccgcagcagctgctgctcctcgtcgtccaccaccactgcca---ctgccactgctgccactactgccacctgcACCTCCAAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTAGCCGGGATGAGCCGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG--AAGAAAA---GAAAGAAAAACATTAGACACGCATCTCCTCGGTACAAATAAAATCAAGTCTAGATGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84309284 5921 + 92844088 ACAA-----ATCTTCCAAATTACCTATTTAGTTTTCTGTCCAT---CATGTGGGGATAGGCGCTT-TAACGAGGAAGAATAATCACG-TGACATGTAA---------------GAACAAAA--------------AC------ATGGGAAAAGAGGAACCAA----ATGAAATAA--AAATCC--------------CAAGCTGGCA--AGAGATTTCTTATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACAGAAGGCTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCGGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGACCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCGGCCAGgctcctctgctcctt------ctgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAACCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCTGTGGCCCTCTTAGGAGGCGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGAAGCATAAAGGACGAGGCCGGGAGCGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTGCCCCTCACCAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTGACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGCGTCAGTTTTATCCAGTGGCTGGGTGGCATACTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATAGGAACTGCTTGTTTGGTTTTTCGCTTCCTTGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGAGGTGGAG------------GCGGTGGCTGCTGCTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTTTTTCCTGATGGGAAATATCCCTTTGGAGGGAAACCTTCTTGCTTGGGTGAAATCGTCACTGTATCGTTCTCTTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCCCGCTGGAGGTACATTCTTTGAGTCTGGAAACATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGTTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCGGCAGTAACTGTTTCTGCATGTGTCTCTGTCTTCACTTTGTCATCCCCGCTGCCACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCAATGTGCAACTCCTGGTTTGCTGGACTGACTAGGTCAGAAGCCACCTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGAAGGACCACTCTTCAAAGACAGTATATCATCAAGCGTAACCGTGTCTCCCCCAGCCTCCGCACTGTTCGAGGACGCACTCCTCCTAATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAACCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGGGTAACAGCAGGGCAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGATAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGTGCCTTCTTTTGATGGGTGAAGGAGGCGACCTTTATCTTCAGTGCTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGAACACGCCTCCTCATGATTAAGGGGTTTTGAGAAGAATGATCCTCCTGGCCTGGAAGTCTTAGCATAACATTACTAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGTGGTCCATACCTTTTTTGACTGGCCATTCCTGGAGGACCACTGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAACTTCTGAGAGCCATGCTTTAATTCCATGCCCTTGTTAGGCAGACCATCACTAGACATTAGGCAGCGCCCAGCCTCCTGAGCGCTTGGGTCATGGTAAGTCCCTACCGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAAAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATCACTCCCTGAGCAGAACTGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGCATTAGGGTCCCCATAAGCATGAGCCCGAGTATTTGTGTGATAAGCAGAGGCCAGGGTTTCTGAGTTGGGAGAAAAGGGAGCATGTAAAGAACTCCGGTTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATCTTCAGTTTTTCTGCAAAGTCATGATATTGAGAAGGGGACCGACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGGGACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGAGGGCCATAGTCTGAAAGGGAATCATGGGTTGCTGCTCCAGGGCTGGCATTGCTGCGGTAAGACTCATGCTTGATGCTAGAAGGATGGCA--GTGGTCTCCAGATTTCTTGTTATTGAAACTAGCTTGGGATTTAGACTGTTCAAAGTCTTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTGGTTTCCATGGACACTAAACCACCAGGAAGAATGACCGACTGACTTAGAGTTGGATTGAGACGGTCATTCCTCCCAATTCTGGTGTCGGCACTCATGTGTCCCAGTGAGTGAGCCCCGGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGCTCATGGGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGTGGTTCCTTCTAGGCTACCAGCCATCCCCTGGTGCTCCTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGCAGGAGGCTTGGGAATTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCCCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACAGCTGACCCGAAACTATCTTTGTAACTATAGCGCAGACTTCCAGGAGATTTGCTAGGTTCAGTTCTGCTTGTAAAACCAGGGCCCACTGCAGAGTGGCCACTCTGGCCATTTCCTTCTCCATTGTGGTTGGAA---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGGAGGCTCTGGCTGGGGAAGTGATGCATGACTCGTTTCCTTTGCCCCACCATTGCTTGGTGGCCTTTGAGTCGCTGCAGGATCATCCTCTTGGGAGCCTTTATCTTGCCCACCAGGCTTTTCTACCCGACTTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTAACCTTTGGGTTCCCGTCG---GACAATGGCATGTCCTTAGCGCCTGGTGAGGTGGTCTCTTCTCTTGCGGCAGGACTAGCATTGAGTCTGGCGGGTTCATTCTGAGCACCCTGTGCCGGTGAGGAGCCAGCTTTCTCAGAGGCTCCGCCCTTGTAGGTGGTGTCAGAGCTGGTGCTCTGACCACTTAGCTGCCGCACCCTCTCACCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAAAGACTCTGCCATAGGGGACTTCAGCTGTTCCTCAGGTTGTGAGGAGCCTTCAGAGTTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCGGCATGAGAATTAGGACTGGGCATCATTGATGGAGTTGGACTGAGTTGAGGCATCAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGGGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGTTGGTTGTACTGCCCCACCTGGCTTTGCAGGGGCAGCTTGGTG---GCAGTGTTGGTATACTGCATCACATGCTGAGGAGGG------tgttgttgttgctgcg---------------------------------------------gctgctgctgctgctgctgcccctgttgG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTGTAATTGGATTGTGTTCCATAAGCCTGTGCATTTGAACCCACACTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaAGCAGAAGACTGATAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGTTGGCCAGTGGCCTGTGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAActgctggact------------------------------------------tgctgctgc------tgctgctggctggaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAATGCGACACACTGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACTCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGTCACAGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCGCTAGCCATtgctgctgcagcagctgctgctcctCGTCGTccaccaccactgcca---ctgccactgccaccactactgccacctgcacctccaAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTATCCGGGATGAACCGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG--AAGAAAA---GAAAGAAAAACATTAGACACGCGTCTCCTCGGTAC-----AAATCAAGTCTAGATGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87655653 5921 - 96509753 ACAA-----ATCTTCCAAATTACCTATTTAGTTTTCTGTCCAT---CATGTGGGGATAGGCGCTT-TAACGAGGAAGAATAATCACG-TGACATGTAA---------------GAACAAAA--------------AC------ATGGGAAAAGAGGAACCAA----ATGAAATAA--AAATCC--------------CAAGCTGGCA--AGAGATTTCTTATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACAGAAGGCTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCGGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGACCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCGGCCAGGctcctctgctcctt------ctgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAACCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCTGTGGCCCTCTTAGGAGGCGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGAAGCATAAAGGACGAGGCCGGGAGCGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTGCCCCTCACCAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTGACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGCGTCAGTTTTATCCAGTGGCTGGGTGGCATACTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTTGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGAGGTGGAG------------GCGGTGGCTGCTGCTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTTTTTCCTGATGGGAAATATCCCTTTGGAGGGAAACCTTCTTGCTTGGGTGAAATCGTCACTGTATCGTTCTCTTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCCCGCTGGAGGTACATTCTTTGAGTCTGGAAACATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGTTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCGGCAGTAACTGTTTCTGCATGTGTCTCTGTCTTCACTTTGTCATCCCCGCTGCCACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCAATGTGCAACTCCTGGTTTGCTGGACTGACTAGGTCAGAAGCCACCTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGAAGGACCACTCTTCAAAGACAGTATATCATCAAGCGTAACCGTGTCTCCCCCAGCCTCCGCACTGTTCGAGGACGCACTCCTCCTAATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAACCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGGGTAACAGCAGGGCAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGATAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCTTTTGATGGGTGAAGGAGGCGACCTTTATCTTCAGTGCTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGAACACGCCTCCTCATGATTAAGGGGTTTTGAGAAGAATGATCCTCCTGGCCTGGAAGTCTTAGCATAACATTACTAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGTGGTCCATACCTTTTTTGACTGGCCATTCCTGGAGGACCACTGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAACTTCTGAGAGCCATGCTTTAATTCCATGCCCTTGTTAGGCAGACCATCACTAGACATTAGGCAGCGCCCAGCCTCCTGAGCGCTTGGGTCATGGTAAGTCCCTACCGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAAAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATCACTCCCTGAGCAGAACTGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGCATTAGGGTCCCCATAAGCATGAGCCCGAGTATTTGTGTGATAAGCAGAGGCCAGGGTTTCTGAGTTGGGAGAAAAGGGAGCATGTAAAGAACTCCGGTTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATCTTCAGTTTTTCTGCAAAGTCATGATATTGAGAAGGGGACCGACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGGGACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGAGGGCCGTAGTCTGAAAGGGAATCATGGGTTGCTGCTCCAGGGCTGGCATTGCTGCGGTAAGACTCATGCTTGATGCTAGAAGGATGGCA--GTGGTCTCCAGATTTCTTGTTATTGAAACTAGCTTGGGATTTAGACTGTTCAAAGTCTTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTGGTTTCCATGGACACTAAACCACCAGGAAGAATGACCGACTGACTTAGAGTTGGATTGAGACGGTCATTCCTCCCAATTCTGGTGTCGGCACTCATGTGTCCCAGTGAGTGAGCCCCGGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGCTCATGGGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGTGGTTCCTTCTAGGCTACCAGCCATCCCCTGGTGCTCCTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGCAGGAGGCTTGGGAATTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCCCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACAGCTGACCCGAAACTATCTTTGTAACTATAGCGCAGACTTCCAGGAGATTTGCTAGGTTCAGTTCTGCTTGTAAAACCAGGGCCCACTGCAGAGTGGCCACTCTGGCCATTTCCTTCTCCATTATGGTTGGAA---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGGAGGCTCTGGCTGGGGAAGTGATGCATGACTCGTTTCCTTTGCCCCACCATTGCTTGGTGGCCTTTGAGTCGCTGCAGGATCATCCTCTTGGGAGCCTTTATCTTGCCCACCAGGCTTTTCTACCCGACTTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTAACCTTTGGGTTCCCGTCG---GACAATGGCATGTCCTTAGCGCCTGGTGAGGTGGTCTCTTCTCTTGCGGCAGGACTAGCATTGAGTCTGGCGGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCAGAGGCTCCGCCCTTGTAGGTGGTGTCAGAGCTGGTGCTCTGACCACTTAGCTGCCGCACCCTCTCACCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAAAGACTCTGCCATAGGGGACTTCAGCTGTTCCTCAGGTTGTGAGGAGCCTTCAGAGTTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCGGCATGAGAATTAGGACTGGGCATCATTGATGGAGTTGGACTGAGTTGAGGCATCAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGGGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGTTGGTTGTACTGCCCCACCTGGCTTTGCAGGGGCAGCTTGGTG---GCAGTGTTGGTATACTGCATCACATGCTGAGGAGGG------tgttgttgttgctgcg---------------------------------------------gctgctgctgctgctgctgcccctgttgG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTGTAATTGGATTGTGTTCCATAAGCCTGTGCATTTGAACCCACACTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaAGCAGAAGACTGATAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGTTGGCCAGTGGCCTGTGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAACTGCTGGACT------------------------------------------tgctgctgc------tgctgctggctggaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAATGCGACACACTGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACTCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGTCACAGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCGCTAGCCATtgctgctgcagcagctgctgctcctCGTCGTccaccaccactgcca---ctgccactgccaccactactgccacctgcACCTCCAAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTATCCGGGATGAACCGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG--AAGAAAA---GAAAGAAAAACATTAGACACGCGTCTCCTCGGTAC-----AAATCAAGTCTAGATGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7152259 5921 - 13098629 ACAA-----ATCTTCCAAATTACCTATTTCGTTTTCTGTCCAT---CATGTGGGGATAGGCGCTT-TAACGAGGAAGAATAATCACG-TGACATGTAA---------------GAACAAAA--------------AC------ATGGGAAAAGAGGAACCAA----ATGAAATAA--AAATCC--------------CAAGCTGGCA--AGAGATTTCTTATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACGGAAGGCTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCGGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGACCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCGGCCAGGctcctctgctcctt------ctgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAACCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCTGTGGCCCTCTTAGGAGGCGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGAAGCATAAAGGACGAGGCCGGGAGCGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTGCCCCTCACCAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTGACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGCGTCAGTTTTATCCAGTGGCTGGGTGGCATACTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTTGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGAGGTGGAG------------GCGGTGGCTGCTGCTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTTTTTCCTGATGGGAAATATCCCTTTGGAGGGAAACCTTCTTGCTTGGGTGAAATCGTCACTGTATCGTTCTCTTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCCCGCTGGAGGTACATTCTTTGAGTCTGGAAACATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGTTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCGGCAGTAACTGTTTCTGCATGTGTCTCTGTCTTCACTTTGTCATCCCCGCTGCCACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCAATGTGCAACTCCTGGTTTGCTGGACTGACTAGGTCAGAAGCCACCTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGAAGGACCACTCTTCAAAGACAGTATATCATCAAGCGTAACCGTGTCTCCCCCAGCCTCCGCACTGTTCGAGGACGCACTCCTCCTAATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAACCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGGGTAACAGCAGGGCAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGATAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCTTTTGATGGGTGAAGGAGGCGACCTTTATCTTCAGTGCTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGAACACGCCTCCTCATGATTAAGGGGTTTTGAGAAGAATGATCCTCCTGGCCTGGAAGTCTTAGCATAACATTACTAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGTGGTCCATACCTTTTTTGACTGGCCATTCCTGGAGGACCGCTGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAACTTCTGAGAGCCATGCTTTAATTCCATGCCCTTGTTAGGCAGACCATCACTAGACATTAGGCAGCGCCCAGCCTCCTGAGCGCTTGGGTCATGGTAAGTCCCTACCGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAAAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATCACTCCCTGAGCAGAACTGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGCATTAGGGTCCCCATAAGCATGAGCCCGAGTATTTGTGTGATAAGCAGAGGCCAGGGTTTCTGAGTTGGGAGAAAAGGGAGCATGTAAAGAACTCCGGTTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATCTTCAGTTTTTCTGCAAAGTCATGATATTGAGAAGGGGACCGACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGGGACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGAGGGCCGTAGTCTGAAAGGGAATCATGGGTTGCTGCTCCAGGGCTGGCATTGCTGCGGTAAGACTCATGCTTGATGCTAGAAGGATGGCA--GTGGTCTCCAGATTTCTTGTTATTGAAACTAGCTTGGGATTTAGACTGTTCAAAGTCTTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTGGTTTCCATGGACACTAAACCACCAGGAAGAATGACCGACTGACTTAGAGTTGGATTGAGACGGTCATTCCTCCCAATTCTGGTGTCGGCACTCATGTGTCCCAGTGAGTGAGCCCCGGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGCTCATGGGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGTGGTTCCTTCTAGGCTACCAGCCATCCCCTGGTGCTCCTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGCAGGAGGCTTGGGAATTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCCCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACAGCTGACCCGAAACTATCTTTGTAAGTATAGCGCAGACTTCCAGGAGATTTGCTAGGTTCAGTTCTGCTTGTAAAACCAGGGCCCACTGCAGAGTGGCCACTCTGGCCATTTCCTTCTCCATTATGGTTGGAA---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGGAAGCTCTGGCTGGGGAAGTGATGCATGACTCGTTTCCTTTGCCCCACCATTGCTTGGTGGCCTTTGAGTCGCTGCAGGATCATCCTCTTGGGAGCCTTTATCTTGCCCACCAGGCTTTTCTACCCGACTTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTAACCTTTGGGTTCCCGTCG---GACAATGGCATGTCCTTAGCGCCTGGTGAGGTGGTCTCTTCTCTTGCGGCAGGACTAGCATTTAGTCTGGCGGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCAGAGGCTCCGCCCTTGTAGGTGGTGTCAGAGCTGGTGCTCTGACCACTTAGCTGCCGCACCCTCTCACCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAAAGACTCTGCCATAGGGGACTTCAGCTGTTCCTCAGGTTGTGAGGAGCCTTCAGAGTTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCGGCATGAGAATTAGGACTGGGCATCATTGATGGAGTTGGACTGAGTTGAGGCATCAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGGGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGTTGGTTGTACTGCCCCACCTGGCTTTGCAGGGGCAGCTTGGTG---GCAGTGTTGGTATACTGCATCACATGCTGAGGAGGG------tgttgttgttgctgcg---------------------------------------------gctgctgctgctgctgctgcccctgttgG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTGTAATTGGATTGTGTTCCATAAGCCTGTGCATTTGAACCCACACTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaAGCAGAAGACTGATAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGTTGGCCAGTGGCCTGTGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAACTGCTGGACT------------------------------------------tgctgctgc------tgctgctggctggaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAATGCGACACACTGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACTCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGTCACAGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCGCTAGCCATTGCTGCCGCAGCAGCTGCTGCTCCTCGTCGTccaccaccactgcca---ctgccactgccaccactactgccacctgcACCTCCAAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTATCCGGGATGAACCGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG--AAGAAAA---GAAAGAAAAACATTAGACACGCGTCTCCTCGGTAC-----AAATCAAGTCTAGATGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4112134 5927 - 4483953 ACAA-----ATCTTCCAAATTACCTATTTCGTTTTCTGTCCAT---CATGTGGGGATAGGCGCTT-TAACGAGGAAGAATAATCACG-TGACATGTAA---------------GAACAAAA--------------AC------ATGGGAAAAGAGGAACCAA----ATGAAATAA--AAATCC--------------CAAGCTGGCA--AGAGATTTCTTATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACGGAAGGCTTCGAGTCCAAAACAGTCTTCTCACTGCTGCCCTCGGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGACCTCCACCACAGTCTTCTGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCGGCCAGGctcctctgctcctt------ctgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAACCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCTGTGACCCTCTTAGGAGGCGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGAAGCATAAAGGACGAGGCCGGGAGCGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTGCCCCTCACCAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTGACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGCGTCAGTTTTATCCAGTGGCTGGGTGGCATACTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTTGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGAGGTGGAG------------GCGGTGGCTGCTGCTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTTTTTCCTGATGGGAAATATCCCTTTGGAGGGAAACCTTCTTGCTTGGGTGAAATCGTCACTGTATCGTTCTCTTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCCCGCTGGAGGTACATTCTTTGAGTCTGGAAACATTACAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGTTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCGGCAGTAACCGTTTCTGCATGTGTCTCTGTCTTCACTTTGTCATCCCCGCTGCCACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCAATGTGCAACTCCTGGTTTGCTGGACTGACTAGGTCAGAAGCCACCTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACGCTCCCACCTTCAGAAGGACCACTCTTCAAAGACAGTATATCATCAAGCGTAACCGTGTCTCCCCCAGCCTCCGCACTGTTCGAGGATGCACTCCTCCTAATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAACCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGGGTAACAGCAGGGCAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGATAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCTTTTGATGGGTGAAGGAGGCGACCTTTATCTTCAGTGCTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGAACACGCCTCCTCATGATTAAGGGGTTTTGAGAAGAATGATCCTCCTGGCCTGGAAGTCTTAGCATAACATTACTAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGTGGTCCATACCTTTTTTGACTGGCCATTCCTGGAGGACCGCTGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAACTTCTGAGAGCCATGCTTTAATTCCATGCCCTTGTTAGGCAGACCATCACTAGACATTAGGCAGCGCCCAGCCTCCTGAGCGCTTGGGTCATGGTAAGTCCCTACCGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAAAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATCACTCCCTGAGCAGAACTGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGCATTAGGGTCCCCATAAGCATGAGCCCGAGTATTTGTGTGATAAGCAGAGGCCAGGGTTTCTGAGTTGGGAGAAAAGGGAGCATGTAAAGAACTCCGGTTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATTTTCAGTTTTTCTGCAAAGTCATGATATTGAGAAGGGGACCGACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGGGACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGAGGGCCGTAGTCTGAAAGGGAATCATGGGTTGCTGCTCCAGGGCTGGCATTGCTGCGGTAAGACTCATGCTTGATGCTAGAAGGATGGCA--GTGGTCTCCAGATTTCTTGTTATTGAAACTAGCTTGGGATTTAGACTGTTCAAAGTCTTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTGGTTTCCATGGACACTAAACCACCAGGAAGAATGACCGACTGACTTAGAGTTGGATTGAGACGGTCATTCCTCCCAATTCTGGTGTCGGCACTCATGTGTCCCAGTGAGTGAGCCCCGGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGCTCATGGGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGTGGTTCCTTCTAGGCTACCAGCCATCCCCTGGTGCTCCTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGCAGGAGGCTTGGGAATTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCCCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACAGCTGACCCGAAACTATCTTTGTAACTATAGCGCAGACTTCCAGGAGATTTGCTAGGTTCAGTTCTGCTTGTAAAACCAGGGCCCACTGCAGAGTGGCCACTCTGGCCATTTCCTTCTCCATTATGGTTGGAA---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGGAGGCTCTGGCTGGGGAACTGATGCATGACTCGTTTCCTTTGCCCCACCATTGCTTGGTGGCCTTTGAGTCGCTGCAGGATCATCCTCTTGGGAGCCTTTATCTTGCCCACCAGGCTTTTCTACCCGACTTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTAACCTTTGGGTTCCCGTCG---GACAATGGCATGTCCTTAGCGCCTGGTGAGGTGGTCTCTTCTCTTGCGGCAGGACTAGCATTGAGTCTGGCGGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCAGAGGCTCCGCCCTTGTAGGTGGTGTCAGAGCTGGTGCTCTGACCACTTAGCTGCCGCACCCTCTCACCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAAAGACTCTGCCATAGGGGACTTCAGCTGTTCCTCAGGTTGTGAGGAGCCTTCAGAGTTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTCTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCGGCATGAGAATTAGGACTGGGCATCATTGATGGAGTTGGACTGAGTTGAGGCATCAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACTACAGAGGCAGCTGGGGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGTTGGTTGTACTGCCCCACCTGGCTTTGCAGGGGCAGCTTGGTG---GCAGTGTTGGTATACTGCATCACATGCTGAGGAGGG------TGTTGTTGTtgctgcggctgc---------------------------------------tgctgctgctgctgctgctgcCCCTGTTGG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTGTAATTGGATTGTGTTCCATAAGCCTGTGCATTTGAACCCACACTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaAGCAGAAGACTGATAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGTTGGCCAGTGGCCTGTGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAACTGCTGGACT------------------------------------------tgctgctgc------tgctgctggctggaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAATGCGACACACTGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGTCACAGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCACTAGCCATTGCTGCCGCAGCAGCTGCTGCTCCTCGTCGTccaccaccactgcca---ctgccactgccaccactactgccacctgcACCTCCAAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTATCCGGGATGAACCGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG--AAGAAAA---GAAAGAAAAACATTAGACACGCATCTCCTCGGTAC-----AAATCAAGTCTAGATGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24742458 5921 + 33263144 ACAA-----ATCTTCCAAATTACCTATTTCGTTTTCTGTCCAT---CATGTGGGGATAGGCGCTT-TAACGAGGAAGAATAATCACG-TGACATGTAA---------------GAACAAAA--------------AC------ATGGGAAAAAAGGAACCAA----ATGAAATAA--AAATCC--------------CAAGCTGGCA--AGAGATTTCTTATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACAGAAGGCTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCGGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGACCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCGGCCAGgctcctctgctcctt------ctgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAACCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCTGTGGCCCTCTTAGGAGGCGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGAAGCATAAAGGACGAGGCTGGGAGCGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTGCCCCTCACCAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTAACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGCGTCAGTTTTATCCAGTGGCTGGGTGGCATACTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTTGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTCGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGAGGTGGAG------------GCGGTGGCTGCTGCTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTTTTTCCTGATGGGAAATATCCCTTTGGAGGGAAACCTTCTTGCTTGGGTGAAATCGTCACTGTATCGTTCTCTTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCCCGCTGGAGGTACATTCTTTGAGTCTGGAAACATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGTTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCGGCAGTAACCGTTTCTGCATGTGTCTCTGTCTTCACTTTGTCATCCCCGCTGCCATGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCAATGTGCAACTCCTGGTTTGCTGGACTGACTAGGTCAGAAGCCACCTCACCTTTTCTCTTCTCTACGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGAAGGACCACTCTTCAAAGACAGTATATCATCAAGCGTAACCGTGTCTCCCCCAGCCTCCGCACTGTTCGAGGATGCACTCCTCCTAATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAATCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGGGTAACAGCAGGGCAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGATAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCTTTTGATGGGTGAAGGAGGCGACCTTTATCTTCAGTGCTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGAACACGCCTCCTCATGATTAAGGGGTTTTGAGAAGAATGATCCTCCTGGCCTGGAAGTCTTAGCATAACATTACTAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGTGGTCCATACCTTTTTTGACTGGCCATTCCTGGAGGACCGCTGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAATTTCTGAGAGCCATGCTTTAATTCCATGCCCTTGTTAGGCAGACCATCACTAGACATTAGGCAGCGCCCAGCCTCCTGAGCGCTTGGGTCATGGTAAGTCCCTACCGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAAAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATCACTCCCTGAGCAGAACTGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGCATTAGGGTCCCCATAAGCATGAGCCCGAGTATTTGTGTGATAAGCAGAGGCCAGGGTTTCTGAGTTGGGAGAAAAGGGAGCATGTAAAGAACTCCGGTTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATTTTCAGTTTTTCTGCAAAGTCATGATATTGAGAAGGGGACCGACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGGGACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGAGGGCCGTAGTCTGAAAGGGAATCATGGGTTGCTGCTCCAGGGCTGGCATTGCTGCGGTAGGACTCATGCTTGATGCTAGAAGGATGGCA--GTGGTCTCCAGATTTCTTGTTATTGAAACTAGCTTGGGATTTAGACTGTTCAAAGTCTTCCTCTTTTATCTGCCCGCTCTGGGATTTCATCTTGGTTTCCATGGACACTAAACCACCAGGAAGAATGACCGACTGACTTAGAGTTGGATTGAGACGGTCATTCCTCCCAATTCTGGTGTCGGCACTCATGTGTCCCAGTGAGTGAGCCCCGGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGCTCATGGGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGTGGTTCCTTCTAGGCTACCAGCCATCCCCTGATGCTCCTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGCAGGAGGCTTGGAAATTTTTCATTTCTACCCTTTCGTTCCCCATGGCTAGTGAAATCCCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACAGCTGACCCGAAACTATCTTTGTAACTATAGCGCAGACTTCCAGGAGATTTGCTAGGCTCAGTTCTGCTTGTAAAACCAGGGCCCACTGCAGAGTGGCCACTCTGGCCATTTCCTTCTCCATTATGGTTGGAA---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGGAGGCTCTGGCTGGGGAAGTGATGCATGACTCGTTTCCTTTGCCCCACCATTGCTTGGTGGCCTTTGAGTCGCTGCAGGATCATCCTCTTGGGAGCCTTTATCTTGCCCACCAGGCTTTTCTACCCGACTTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTAACCTTTGGGTTCCCGTCG---GACAATGGCATGTCCTTAGCGCCTGGTGAGGTGGTCTCTTCTCTTGTGGCAGGACTAGCATTGAGTCTGGCAGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCAGAGGCTCCGCCCTTGTAGGTGGTGTCAGAGCTGGTGCTCTGACCACTTAGCTGCCGCACCCTCTCACCGTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAAAGACTCTGCCATAGGGGACTTCAGCTGTTCCTCAGGTTGTGAGGAGCCTTCAGAGTTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCGGCATGAGAATTAGGACTGGGCATCATTGATGGAGTTGGACTGAGTTGAGGCATCAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGGGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGTTGGTTGTACTGCCCCACCTGGCTTTGCAGGGGCAGCTTGGTG---GCAGTGTTGGTATACTGCATCACATGCTGAGGAGGG------tgttgttgttgctgcg---------------------------------------------gctgctgctgctgctgctgcccctgttgG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTGTAATTGGATTGTGTTCCATAAGCCTGTGCATTTGAACCCACACTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaAGCAGAAGACTGATAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGTTGGCCAGTGGCCTGTGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAActgctggact------------------------------------------tgctgctgc------tgctgctggctagaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAATGCGACACACTGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGTCACAGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCGCTAGCCATCGCTGCCGCAGCAGCTGCTGCTCCTCGTCGTccaccaccactgcca---ctgccactgccaccactactgccacctgcacctccaAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTATCCGGGATGAACCGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG--AAGAAAA---GAAAGAAAAACATTAGACACGCATCTCCTCGGTAC-----AAATCAAGTCTAGATGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14023463 5921 - 14338769 ACAA-----ATCTTCCAAATTACCTATTTCGTTTTCTGTCCAT---CATGTGGGGATAGGCGCTT-TAACGAGGAAGAATAATCACG-TGACATGTAA---------------GAACAAAA--------------AC------ATGGGAAAAGAGGAACCAA----ATGAAATAA--AAATCC--------------CAAGCTGGCA--AAAGATTTCTTATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACGGAAGGCTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCGGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGACCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCGGCCAGGctcctctgctcctt------ctgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAACCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCTGTGGCCCTCTTAGGAGGCGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGAAGCATAAAGGACGAGGCCGGGAGCGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTGCCCCTCACCAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTGACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGCGTCAGTTTTATCCAGTGGCTGGGTGGCATACTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTTGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGAGGTGGAG------------GCGGTGGCTGCTGCTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTTTTTCCTGATGGGAAATATCCCTTTGGAGGGAAACCTTCTTGCTTGGGTGAAATCGTCACTGTATCGTTCTCTTTCTCGTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCCCGCTGGAGGTACATTCTTTGAGTCTGGAAACATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGTTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCGGCAGTAACCGTTTCTGCATGTGTCTCTGTCTTCACTTTGTCATCCCCGCTGCCACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCAATGTGCAACTCCTGGTTTGCTGGACTGACTAGGTCAGAAGCCACCTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACGCTCCCACCTTCAGAAGGACCACTCTTCAAAGACAGTATATCATCAAGCGTAACCGTGTCTCCCCCAGCCTCCGCACTGTTCGAGGATGCACTCCTCCTAATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAACCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGGGTAACAGCAGGGCAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGATAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCTTTTGATGGGTGAAGGAGGCGACCTTTATCTTCAGTGCTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGAACACGCCTCCTCATGATTAAGGGGTTTTGAGAAGAATGATCCTCCTGGCCTGGAAGTCTTAGCATAACATTACTAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGTGGTCCATACCTTTTTTGACTGGCCATTCCTGGAGGACCGCTGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAACTTCTGAGAGCCATGCTTTAATTCCATGCCCTTGTTCGGCAGACCATCACTAGACATTAGGCAGCGCCCAGCCTCCTGAGCGCTTGGGTCATGGTAAGTCCCTACCGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAAAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATCACTCCCTGAGCAGAACTGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGCATTAGGGTCCCCATAAGCATGAGCCCGAGTATTTGTGTGATAAGCAGAGGCCAGGGTTTCTGAGTTGGGAGAAAAGGGAGCATGTAAAGAACTCCGGTTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATTTTCAGTTTTTCTGCAAAGTCATGATATTGAGAAGGGGACCGACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGGGACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGAGGGCCGTAGTCTGAAAGGGAATCATGGGTTGCTGCTCCAGGGCTGGCATTGCTGCGGTAAGACTCATGCTTGATGCTAGAAGGATGGCA--GTGGTCTCCAGATTTCTTGTTATTGAAACTAGCTTGGGATTTAGACTGTTCAAAGTCTTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTGGTTTCCATGGACACTAAACCACCAGGAAGAATGACCGACTGACTTAGAGTTGGATTGAGACGGTCATTCCTCCCAATTCTGGTGTCGGCACTCATGTGTCCCAGTGAGTGAGCCCCGGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGCTCATGGGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTTCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTACTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGTGGTTCCTTCTAGGCTACCAGCCATCCCCTGGTGCTCCTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGCAGGAGGCTTGGAAATTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCCCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACAGCTGACCCGAAACTATCTTTGTAACTATAGCGCAGACTTCCAGGAGATTTGCTAGGTTCAGTTCTGCTTGTAAAACCAGGGCCCACTGCAGAGTGGCCACTCTGGCCATTTCCCTCTCCATTATGGTTGGAA---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGGAGGCTCTGGCTGGGGAAGTGATGCATGACTCGTTTCCTTTGCCCCACCATTGCTTGGTGGCCTTTGAGTCGCTGCAGGATCATCCTCTTGGGAGCCTTTATCTTGCCCACCAGGCTTTTCTACCCGACTTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTAACCTTTGGGTTCCCGTCG---GACAATGGCATGTCCTTAGCGCCTGGTGAGGTGGTCTCTTCTCTTGCGGCAGGACTAGCATTGAGTCTGGCGGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCAGAGGCTCCGCCCTTGTAGGTGGTGTCAGAGCTGGTGCTCTGACCACTTAGCTGCCGCACCCTCTCACCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAAAGACTCTGCCATAGGGGACTTCAGCTGTTCCTCAGGTTGTGAGGAGCCTTCAGAGTTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCGGCATGAGAATTAGGACTGGGCATCATTGATGGAGTTGGACTGAGTTGAGGCATCAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGGGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGTTGGTTGTACTGCCCCACCTGGCTTTGCAGGGGCAGCTTGGTG---GCAGTGTTGGTATACTGCATCACATGCTGAGGAGGG------tgttgttgttgctgcg---------------------------------------------gctgctgctgctgctgctgcccctgttgG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTGTAATTGGATTGTGTTCCATAAGCCTGTGCATTTGAACCCACACTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaAGCAGAAGACTGATAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGTTGGCCAGTGGCCTGTGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAACTGCTGGACT------------------------------------------tgctgctgc------tgctgctggctggaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAATGCGACACACTGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGTCACAGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCACTAGCCATTGCTGCCGCAGCAGCTGCTGCTCCTCGTCGTccaccaccactgcca---ctgccactgccaccactactgccacctgcACCTCCAAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTATCCGGGATGAACCGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG--AAGAAAA---GAAAGAAAAACATTAGACACGCATCTCCTCGGTAC-----AAATCAAGTCTAGATGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 961731 5924 + 1946073 ACAA-----ATCTTCCAAATTACCTATTTCGTTTTCTGTCCAT---CATGTGGGGATAGGCGCTT-TAACGAGGAAGAATAATCACG-TGACATGTAA---------------GAACAAAA--------------AC------ATGGGAGAAAAGGAACCAA----ATGAAATAA--AAATCC--------------CAAGCTGGTA--AGAGATTTCTCATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCGTCTGAAGTGGTGGGCACGGAAGGCTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCGGTGGCAGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGACCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCGGCCAGgctcctctgctcctt------ttgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAACCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCTGTGGCCCTCTTAGGAGGCGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGAAGCATAAAGGACGAGGCCGGGAGCGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTGCCCCTCACCAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTTACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGCATCAGTTTTATCCAGTGGCTGGGTAGCATACTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTTGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGGGGTGGAG------------GCGGTGGCTGCTGCTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTTTTTCCTGATGGGAAATATCCCTTTGGAGGGAAACCCTCTTGCTTGGGTGAAATCGTCACTGTATCGTTCTCTTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCCCGCTGGAGGTACATTCTTTGAGTCTGGAAACATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGTTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCGGCAGTAACCGTTTCTACATGTGTCTCTGTCTTCACTTTGTCATCCCCGCTGCCACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCAATGTGCAACTCTTGGTTTGCTGGACTGACTAGGTCAGAAGCCACCTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGGAGGACCACTCTTCAAAGACAGTATATCATCAAGTGTAACCGTGTCTCCCCCAGCCTCTGCACTGTTCGAGGATGCGCTCCTCCTAATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAATCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGGGTAACGGCAGGGCAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGATAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCTTTTGATGGGTGAAGGAGGCGACCTTTATCTTCAGTGCTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGAACACGCCTCCTCATAATTAAGGGGTTTTGAGAAGAATGATCCTCCTGGCCTGGAAGTCTTAGCATAACATTACTAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGTGGTCCATACCTTTTTTGACTGGCCATTCCTGGAGGACCACTGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAACTTCTGAGAGCCATGCTTTAATTCCATGCCCTTGTTAGGCAGACCATCACTAGACATTAGGCAGCGCCCAGCCTCCTGAGCGCTTGGGTCATGGTAAGTCCCTACTGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAAAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATCACTCCCTGAGCAGAACCGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGCATTAGGGTCCCCATAAGCATGAGCTCGAGTATTTGTGTGATAAGCAGAGGCCAGGGTTTCTGAGTTGGGAGAAAAGGGAGCATGTAAAGAACTCCGGTTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATATGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATTTTCAGTTTTTCTGCAAAGTCATGATATTGAGAAGGGGACCGACCCCTCATGCCCTCACGACCACCAACTCTGCCAGGGACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGAGGGCCGTAGTCTGAAAGGGAATCATGGGTTGCTGCTCCAGGGCTGGCATTGCTGCGGTAAGACTCATGCTTGATGCTAGAAGGATGGCA--GTGGTCTCCAGATTTCTTGTTATTGAAACTAGCTTGGGATTTAGACTGTTCAAAGTCTTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTGGTTTCCATGGACACTAAACCACCAGGAAGAATGACCGACTGACTTAGAGTTGGATTGAGACGGTCATTCCTCCCAATTCTGGTGTCGGCACTCATGTGTCCCAGTGAGTGGGCCCCGGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGCTCATGGGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGTGGTTCCTTCTAGGCTACCAGCCATTCCCTGATGCTCCTGAGTACTCCTAGAGTATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGCAGGAGGCTTGGGAATTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCCCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACAGCTGACCCGAAACTATCTTTGTAACTATAGCGCAGACTTCCAGGAGATTTGCTAGGCTCAGTTCTGCTTGTAAAACCAGGGCCCGCTGCAGAGTGGCCACTCTGGCCATTTCCTTCTCCATTATGGTTGGAG---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGGAGGCTCTGGCTGGGGAAGTGATACATGACTCGTTTCCTTTGCCCCACCATTGCTTGGTGGCCTTTGAGTGGCTGCAGGATCATCCTCTTGGGAGCCTTTATCTTGCCCACCAGGCTTTTCTACCCGACTTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTAACCTTTGGGTTCCCATCG---GACAATGGCATGTCCTTAGCGCCTGGTGAGGTGGCCTCTTCTCTTGCGGCAGGACTAGCATTGAGTCTGGCGGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCAGAGGCTCCACCCTTGTAGGTGGTGTCAGAGCTGGTGCTCTGACCACTTAGTTGCCGCACTCTCTCACCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAAAGACTCTGCCATAGGGGACTTCAGCTGTTCCTCAGGTTGTGAGGAGCCTTCAGAGTTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTGAGGGCATCAGAAAGTAACATGTGCTGGACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGTGGCATGAGAATTAGGACTGGGCATCATTGATGGAGTTGGACTGAGTTGAGGCATCAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGGGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGTTGGTTGTACTGCCCCACCTGACTTTGCAGGGGCAGCTTGGTG---GCAGTGTTGGTATACTGCATCACATGCTGAGGAGGG------tgttgttgttgctgcg------------------------------------------------gctgctgctgctgctgcccctgttgG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTGTAATTGGATTGTGTTCCATAAGCCTGTGCATTTGAACCCACACTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaAGCAGAAGACTGATAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGTTGGCCAGTGGCCTGTGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAActgctggact------------------------------------tgctgctgctgctgc------tgctgctggctggaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAATGTGACACACTGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGTCACAGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCCTGATGGCCAGAGGTCTCGCTAGCCATCGCTGCCGCAGCAGCTGCTGCTCCTCGTCGTccactaccactgcca---ctgccactgccaccactactgccacctgcacctccaaAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTATCCGGGATGAACCGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG--AAGAAAA---GAAAGAAAAACATTAGACACACATCTCCTCGGTAC-----AAATCAAGTCTAGATGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1988347 5926 - 2117846 ACAA-----ATCTTCCAAATTACCTATTTCATTTTCTGTCCAT---CATTTAGGGATAGGTGGTT-TAATTTGGAGGAATAATCACG-TAATATAT------------------AACAAAA--------------AC------ATGGGAGAGAAGGAATCAA----ATGAAATAA--AAATCC--------------CAAGCTGGTA--AGAGATTTCTTATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCGCAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGAATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACAGAGGGCTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCAGTGGCTGCTTTTTTACAAGGGAGTCCCCTGGACAGGGACCGAGGGCCTCCACCACAGTCTTCGGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCAGCCAGGCTCCTctgctcctt---ctgctgctgctgctgctgctCTTCCTCCTCCTCAGTGTCCGTCTTGGAGCCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCTGTGGCCCTCTTGGGAGGCGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACTGAAGACTCTGTCACAACAGGTCCCTGCAGCATAAAGGACGAGGCCGGGAGCGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTACCCTTCACCAATTTGGTCTGTTCTTCTTCCTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTTACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGCATCAGTTTTATCCAGTGGCTGGGTGGCATACTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTTGGTTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTAACTGTGGGGGCTGAGGGGGTGGAG------------GCGGTGGCTGCTGCTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTCTTTCCTGATGGGAAATACCCCTTTGGAGGGAAGCCCTCTTGCTTGGGTGAAATCGTCACTGTATCATTCTCTTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCCCACTGGAGGTACATTCTTTGAGTCTGGAAAGATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGCTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCGGCAGTAACTGATTCTGCATGTGTTTCTGTCTTCACTTTGTCATCCCCGCTGCCACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCAATGTGCAACTCCTGGTTTGCTGGACTGACTAGGTCAGAGGCCACGTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGGAGGACCACTCTTCAAAGAGAGTATATCATCAAGAGTAACCGTGTCTCCCCCAGCCTCTGCGCTGTTCGAGGATGCGCTCCTCCTGATATTTGGGGATGTAATCTTCTGAACTATAGCTTCTAATTTCAATCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGAGTAACAGGAGGACAGTTTCTATTATCTGGATTTGGAAGGTCCTTGGAGGAGTCTCTCTTAGAGATGGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCCTTTGATGGGTGAAGGAGGCGACTTTTATCTTCAGTGTTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGGACACGCCTCCTCATAATTAAGGGGTTTTGAGAAGAATGGTCTTCCTGGCCTGGAAGTCTCAGCATAACATTACTAGATTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGTGGCCCATACCTTTTTTGACTGGACATTCCTGGAGGACCACCGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAAGATTC---TTGTAATTTCTGGGAGCCATGCTTTAATTCCATGCCCTTGTTAGGCAGACCATCATTAGACAATAGGCAGCGCCCAGTCTCCTGAGCACTGGGATCATGATAAGTCCCTACCGGTGGCCCATACATCATACCATCTTTGTCATTTTTCAGAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTTCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATTACTCCCTGAGCAGAACTGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGCGTTTGGGTCCCCATAAGCATGAGCCCGAGTATTTGCATGATAAGCGGAGGCCAGGCTTTCTGAGTTGGGAGAAAAGGGAGCATGTAAAGAACTCCGGTTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATCTTCAATTTTTCTGCAAAGTCATGATATTGAGAAGGAGACCGACCCCTCATGCCCTCTCGACCACCAACTCTGCCAGGAACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGTGGGCCGTAGTCTGAAAGGGCATCATGGGTTGCTGCTCCAGGGTTGGCATTGCCACGGTAAGACTCATGCTTAATGCTAGAAGGATGGCA--GTGGTCTCCAGATTTC---TTGTTGAAACTAGCTTGGGATTTAGACTGTTCAAAGTCCTCCTCTTTTATCTGCCCACTCTGGGATTTCAGCTTTGTTTCCATGGACACCAAACCACCTGGAAGAATGACCGACTGACTTAAACTTGGATTGAGACGGTCATTCCTCCCAATCCTGGTGTCGGCACTCATATGTCCCAGTGAGTGAGCCCCTGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGTTCATGGGCTGATGATTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCTCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGCAGATCCTTCTAGGCTACCAGCCATCCCCTGATGCTCCTGAGTACTCCTAGAATATCTCCTGTCGGGGTGGTGGTGGTAACCCTGAAGTACTTCCTGCAGGAGGCTTGGAAACTTTTCATTTCTACCCTTTCGTTCCCCATGACCAGTGAAATCTCCTTTTTCTTGCCCTGAAGGAAACTGAGGAAAGCCACTGACATTTCGTGGCACAGCTGACCCGAAACTATCTTTATAACTATAGCGCAGACTTCCGGGAGATTTGCTAGGTTCAGTTCTGCTTGCAAAACCAGGGCCTGCTGCAGAGTGGCCACTCTGGCCATTTCCCTCTCCATTATGGTTGGAG---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCCCCTCCTCCTGCAGGCTCTGGCTGGGGAAGTGATGCATGACTGGTTTCCTTTGCCCCACCATTGCTAGATGGCCTTTGAGTGGCTGCAGAATCATCCTCTTGGGAGCCTTTATCTTGTCCACCAGGCTTTTCTACCCGACTTGTCATGGCTTCCCGGGATACAATCACCCCAACTGTCTTCTCATTGACTTTTGGGTTCCCGTCGGATGACAATGGCATGTCCTTAGCACCTGGTGAGGAGGCCTCTTCTCTAGCTGCGGGACTAGCATTGAGTCTGGGGGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCTGAGGCTCCACCTTTGTAGGTGGTGTCAGAGCTGGTGCTCTGGCCACTTAGTTGCCGCACTCTCTCACCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAACGATTCTGCCATAGGGGACTTCAGCTGTTCTTCAGGTTGTGAGGAGCCTTCAGAGTTTGTGCAGCTGTCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTAGAGGTCTTCTTCTGAGGAGTTAGGGCATCAGAAAGTAACATGTGCTGTACAGTGTTAGGAAGATTGGCTACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCGGCATGAGAATTAGGACTGGGCATCATTGATGGGGTTGGACTGAGTTGAGGCATTAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGAAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGGGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGCTGGCTGTATTGCCCCACCTGGCTTTGCAGGGGCAGCTTGGTG---GCAGCATTGGTATACTGCATCACATGCTGAGGAGGG------tgttgttgctgctgcg------------------------------------------------gttgctgctgctgctgcCCCTGTTGG---GTCCCCTGTGGAACTTTTGCCTGTTCAAAATTTTTCATAGATTGAGGCTGATAGCTGTAATTGGATTGTGTTCCATAAGCCTGTGCATTAGAACCCACATTGTGCCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaAGCAGAAGACTGGTAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAACTGGATGCTGGCTGGCCAGTGGCCTGCGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCGCAACTGCTGGACT------------------------------------------tgctgctgctgc---tgctgctgGCTGGAAGCCTGCTGTTGGTACTGAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAATGCGACACACTGCCAAGGCCAGAATGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGAGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGCCACAGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCGCTAgccattgctgctgcagcagctgctgctcctcgtcgtccaccgccactgcta---ctgccactgccaccactactgccacctgcacctccaAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCCTCTATCCGGGATGAGCTGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCTCTAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAACAG--AAGAAAA---GAAAGAAAAACATTAGACATGCATCTCCTTGATACAAATAAAATCAAGTCACGATGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8899389 5930 - 16357246 ACAA-----ATCTTCCAAATTACC--TTTCATTTTGTGTCCAT---CATTTAGGGATAGGTGGTT-TAATCTGGAGGAATAATCATG-TAATACGT------------------AACAAAA--------------AC------ATGGGAGAGAAGGAATCAA----ATGAAATAA--AAATCC--------------CAAGCTGGTA--AGAGATTTCTTATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCGCAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACAGAGGGCTTTGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCAGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGGCCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCAGCCAGGCTCCTctgctcctt---ctgctgctgctgctgctgctCTTCCTCCTCCTCAGTGTCCGTCTTGGAGCCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGTTCTGCATTTCTGTGGCCCTCTTAGGAGGCGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGCAGCATAAAGGACGAGGCCGGGAGTGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTACCCCTCACCAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTTACTACATGGATATAAGGGTAAAAAGACTTGTTCTTGGCGTCAGTTTTATCCAGTGGCTGGGTGGCATACTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACCGCTTGTTTGGTTTTTCGCTTCCTTGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGGGGTGGAG------------GCGGTGGCTGCTGCTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTCTTTCCTGATGGGAAATACCCCTTTGGAGGGAAGCCCTCTTGCTTGGGTGAAATCGTCACTGTATCATTCTCTTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCCCACTGGAGGTACATTCTTTGAGTCTGGAAAGATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGCTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCAGCAGTAACTGACTCTGCATGTGTCTCTGTCTTCACTTTGTCATCCACACTGCCACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCAATGTGCAACTCCTGGTTTGCTGGACTGACTAGGTCAGAGGCCACCTCACCTTTTCTCTTCTCTACGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGGAGGACCACTCTTCAAAGAGAGTATATCATCAAGAGTAACTGTGTCTCCCCCAGCCTCTGCACTGTTCGAGGAAGCGCTCCTCCTGATATTTGGAGAGGTAATCTTCTGAACTATAGCTTCCAATTTCAAGCCCCGTCCTTTCCTTGGGGGCAGTATTTTAGTCTTTGCAGGGCTTGTGAGAGTAACAGCAGGACAGTTTCTATTATCTGAACTTGGAAGGTCCTTGGAGGAGTCTCTCTTAGAGATAGACTTGATATCCTGACTGTGAGAAAGATGGGTAAAGGAATTGAATGCTTTATCAGCGCCTTCCTTTGATGGGTGAAGGAGGCGACTTTTATCTTCAGTGTTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGGACACGCCTCCTCATAATTAGGGGGTTTTGAGAAGAATGGTCTTCCTGGCCTGGAAGTCTCAGCATAACATTACTAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGTGGCCCATACCTTTTTTGACTGGACATTCCTGGAGGACCACCACTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAATTTCTGTGAGCCATGCTTTAATTCCATGCCCTTGCTAGGCAGACCATCACTAGATAATAGGCAGCGCCCAGTCTCCTGAGCGCTGGGGTCATGGTAAGTCCCTACCGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAGAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGTCTTGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATGACTCCCTGAGCAGAACCGCTGCTCCAGTCTTTGTACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGTGTTTGGGTCCCCATAAGCATGAGCCCGAGTATTTGCGTGATAAGCAGAGGCCAGGCTTTCTGAGTTGGGAGAAAAGGGAGCATGTAAAGAACTTCGATTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCTCCCAGGAGACATCTTCAATTTTTCTGCAAAGTCATGATATTGAGAAGGAGACCGACCCCTTATGCCCTCCCGACCACTAACTCTGCCAGGAACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGCGAGCTGTAGTCTGAAAGGGCATCATGGGTTGCTGCTCCAGGGTTGGCACTGCCACGGTAAGACTCATGCTTAATGCTAGAAGGATGGCA--GTGGTCTCCAGATTTCTTGTTGTTGAAACTAGCTTGGGATTTAGACTGTTCAAAGTCCTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTTGTTTCCATGGACACCAAACCACCTGGAAGAATGACCGACTGACTTAAACTTGGATTGAGACGGTCATTCCTCCCAATCCTGGTGTCGGCACTCATATGTCCCAGTGAGTGAGCCCCTGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGTTCATGGGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCTCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGCGGATCCTTCTAGGCTACCAGCCACCCCCTGATGCTCCTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGCAGGAGGCTTGGAAACTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCTCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACAGCTGACCCGAAACTATCTTTGTAACTATAGCGCAGACTTCCAGGAGATTTGCTAGGCTCAGTTCTGCTTGTAAAACCAGGGCCTGCTGCAGAGTGGCCACTCTGGCCATTTCCCTCTCCATTATGGTTGGAG---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGCAGGCTCTGGCTGGGGAAGAGATGCATGACTGGTTTCCTTTGCCCCACCATTGCTAGGTGGCCTCTGAGTGGTTGCAGAATCATCCTCTTGGGAGCCTTTATCTTGTCCACCAGGCTTTTCTACCCGACTTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTGACCTTTGGGTTCCCGTCAGATGACAATGGCATGTCCTTAGCACCTGGGGAGGTGGCCTCTTCTCTAGCTGCGGGACTAGCATTGAGTCTAGGGGTTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCCGAGGCTCCACCTTTGTAGGTGGTGTCAGAGCTGGTGCTCTGGCCACTTAGTTGCCGCACTCTCTCGCCTGGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAACGATTCTGCCATAGGGGACTTCAGCTGTTCTTCAGGTTGTGAGGAGCCTTCAGAGTTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTTTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGTACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCGGCATGAGAATTAGGACTGGGCATCATTGATGGGGTTGGACTGAGTTGAGGCATTAACTGTAAAATTCTGTTTCTGGAACCCATAGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGGGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGCTGGTTGTACTGCCCCACCTGGCTTTGCAGGGGCAGCTTGGTG---GCAGCATTGGTATACTGCATCACATGCTGAGGAGGG------tgttgttgctgctgtg------------------------------------------------gttgctgctgctgctgcCCCTGTTGG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTTTTCATAGATTGAGGCTGATAGCTATAATTGGATTGTGTTCCATAAGCCTGTGCATTAGAACCCACATTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTgaagggaaggaggaggaggaagaggaggaagcagaagaCTGGTAGTGTTGGCCAAACTGACCCACTCTCAACTGGTAACCAGCAGCAGAAGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGCTGGCCAGCGGCCTGCGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAACTGCTGGACT------------------------------------------tgctgctgctgctgttgctgctgGCTGGAAGCCTGCTGTTGGTACTGAGCACTCCCTGGAGAGAAAGGCCCCGTGTAATCCTGCTGATAATGTGACACACCGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTACTCCCCTGAGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGCCACGGGGTCTTTGTTGCCTGTCATGTAGTAAAAATCTCCAGCCTCTTTTCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCACTAGCCATCgctgctgcagcagctgctgctcctcgtcgtccaccaccactgcta---ctgccactgccaccactactgccacctgcacctccaAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCCTCTATCCGAGATGAGCTGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCTCTAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAACAG--AAGAAAA---GAAATAAAAACATTAGACATGTATCTTCTTGGTACAAATAAAATCAAGTCTAGATGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1383676 5926 - 1807191 ACAA-----ATCTTCCAAATTACCTATTTCATTTTCTGTCCAT---CATTTAGGGATAGGTGGTT-TAATTTGGAGGAATAATCATG-TAATACAT------------------AACAAAA--------------AC------ATGGGCGAGAAGGAATCAA----ATGAAATAA--AAATCC--------------CAAGCTAGTA--AGAGATTTCTTATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACAGAGGGCTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCAGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGGCCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGCGCAGCCAGgctcctctgctcctt---ctgctgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAGCCATTGGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCTGTGGCCCTCTTAGGAGGCGGATTCTTCGGGAGGGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACCGAAGACTCTGTCACAACAGGTCCCTGCAGCATAAAGGACGAGGCTGGGAGTGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTACCCCTCACCAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTTACTACATGGATATAAGGGTAAAAAGACTTGTTCTTGGCGTCAGTTTTATCCAGTGGCTGGGTGGCATACTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTTGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGTCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGGGGTGGAG------------GCGGTGGCTGCTGCTG---CTTCTTCTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTCTTTCCTGATGGGAAATACCCCTTTGGAGGGAAGCCCTCTTGCTTGGGTGAAATCGTCACTGTATCATTCTCTTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCCCACTGGAGGTACATTCTTTGAGTCTGGAAAGATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGCTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCAGCTGTAACTGATTCTGCATGTGTCTCTGTCTTCACTTTGTCATCCCCACTGCCACGCCATTCTTCTGAAGACCTTGGAAGAGGTTTCTCAATGTGCAACTCCTGGTTTGCTGGACTGGCTAGGTCAGAGGCCACCTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGGAGGACCACTCTTCAAAGAGAGTATATCATCAAGAGTAACTGTGTCTCCCCCAGCCTCTGCGCTGTTCGAGGAAGCGCTCCTCCTGATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAATCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGAGTAACAGCAGGACAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAGTCTCTCTTAGAGATAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCCTTTGATGGGTGAAGGAGGCGACTTTTATCTTCAGTGTTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGGACACGCCTCCTCATAATTAAGGGGTTTTGAGAAGAATGGTCTTCCTGGCCTGGAAGTCTCAGCATAACATTACTAGGTTTGGATGACTGTGTAGCCTCAGCTAGTCCATGTCCATCAGTCTCATGGGGTGGCCCATACCTTTTTTGACTGGACATTCCTGGAGGACCACCGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAGGATTC---TTGTAATTTCTGGGAGCCATGCTTTAATTCCATGCCCTTGCTAGGCAGACCATCACTAGACAATAGGCAGCGCCCAGTCTCCTGAGCGCTGGGGTCATGGTAAGTCCCTACCGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAGAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATTACTCCCTGAGCAGAACTGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGCGTTTGGGTCCCCATAAGCATGAGCCCGAGTATTTGCGTGATAAGCAGAGGCCAGGCTTTCTGAATTGGGAGAAAAGGGAGCATGTAAAGAACTCCGATTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATATGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATCTTCAATTTTTCTGCGAAGTCATGATATTGAGAAGGAGACCGACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGGAACCCGCCGCATTGGCGTGGGTCTGCTGTC---TTGTGGGCCATAGTCTGAAAGGGCATCATGGGTTGCTGCTCCAGGGTTGGCACTGCCACGGTAAGACTCATGCTTAATGCTAGAAGGATGGCA--GTGGTCTCCAGATTTCTTGTTGTTGAAACTAGCTTGGGATTTAGACTGTTCAAAGTCCTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTTGTTTCCATGGACACCAAACCACCTGGAAGAATGACTGACTGACTTAAACTTGGATTGAGACGGTCATTCCTCCCAATCCTGGTGTCGGCACTCATATGTCCCAGTGAGTGAGCCCCTGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGTTCATGGGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGCGCCCCAGTGGGGGTTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCTCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACATTGGGCCTTGCGGATCCTTCCAGGCTACCAGCCATCCCCTGATGCTCCTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGCAGGAGGCTTGGGAACTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCTCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGATATTTCGTGGCACAGCTGACCCGAAACTATCTTTGTAACTATAGCGCAGACTTCCAGGAGATTTGCTAGGCTCAGTCCTGCTTGTAAAACCAGGGCCTGCTGCAGAGTGGCCACTCTGGCCATTTCCCTCTCCATTATGGTTGGAG---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGCAGGCTCTGGCTGGGGAAGTGAGGCATGACTGGTTTCCTTTGCTCCACCATTGCTAGGTGGCCTTTGAGTGGTTGCAGAATCATCCTCTTGGGAGCCTTTATCTTGTCCACCAGGCTTTTCTACCCGACTTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTGACCTTTGGGTTCCCGTCAGATGACAATGGCATGTCCTTAGCACCTGGGGAGGTGGCCTCTTCTCTAGCTGCGGGACTAGCATTGAGTCTGGGGGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCGGCTTTCTCCGAGGCTCCACCTTTGTAGGTGGTGTCAGAGCTGGTGCTCTGGCCACTTAGTTGCCGCACTCTCTCGCCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAACGATTCTGCCATAGGGGACTTCAGCTGCTCTTCAGGTTGTGAGGAGCCTTCAGAGTTTGTGCAACTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGTACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCGGCATGAGAATTAGGACTGGGCATCATTGATGGGGTTGGACTGAGTTGAGGCATTAACTGTAAAATTCTGTTTCTGGAACCCATAGACACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCTGGGGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGCTGGTTGTACTGCCCCACCTGGCTTTGCAGGGGCAGCTTGGTG---GCAGCATTGGTATACTGCATCACATGCTGAGGAGGG------tgttgttgctgctgcg------------------------------------------------gttgctgctgctgctgcccctgttgG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTTTTCATAGATTGAGGCTGATAGCTATAATTGGATTGTGTTCCATAAGCCTGTGCATTAGAACCCACATTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGCGGTgaagggaaggaggaggaggaagaggaggaagcagaagaCTGGTAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGTTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGCTGGCCAGTGGCCTGCGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAACTGCTGGACT------------------------------------------tgctgctgc------tgctgctggctggaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAATGCGACACACCGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGAGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGCCACAGGGTCTTTGTTGCCTGTCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGACCAGAGGTCTCACTAGCCATCACTGCTGCAGCAGATGCTGCTCCTCGTCGTccaccaccactgcta---ctgccactgccaccactactgccacctgcACCTCCAAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCCTCTATCCGGGATGAGCTGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCTCTAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAACAG--AAGAAAA---GAAATAAAAACATTAGACATGCATCTTCTTGGTACCAATAAAATCAAGTCTAGATGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 63220 5933 + 5963231 ACAA-----ATCTTCCAAATTGCCTATTTCATTTTCTGTCCAT---CATTTAGGGACAGGTGGTT-TAATTTGGAGGAATAATCATG-TAATACAT------------------AACAAAA--------------AC------ATGGGAGAGAAGGAATCAG----ATGAAATAA--AAATCC--------------CAAGCTGGTA--AGAGATTTCCTATACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCGCAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACAGAGGGCTTCGAGTCCAAAACAGTCTTTTCACTGCTGCCCTCAGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGGCCTCCACCACAGTCTTCCGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCAGCCAGgctcctctgctccttctgctgctgctgctgctgctgctcttcctcctcctcAGTGTCCGTCTTGGAGCCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTACTCTGCATTTCTGTGGCCCTCTTAGGAGGCGGATTCTTCGGGAGAGTGGCTGCATAATCTTGGGGATAAAAAGGTCCAAAGAGGTCACCCATGTTCCGATAACTGGCCCACTTGCCACACAGACAACAAACCAGGTGCCCCATAACCAAAGACTCTGTCACAACAGGTCCCTGCAGCATAAAGGATGAGGCCGGGAGCGCCTTGCTTTCAGTGCTGCTAGGTGGAGGGGTCAGTGACCTCTGACCCTTCCTACCCTTCACCAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTTACTACATGGATGTAAGGGTAAAAAGACTTGTTCTTGGTGTCAGTTTTATCCAGTGGCT-GGTGGCATACATTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTTGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGTGGGGGCTGAGGGGGTGGAG--------------GGTGGCTGCTGCTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTCTTTCCTGATGGGAAATACCCCTTTGGAGGGAAGCCCTCTTGCTTGGGTGAAATCGTCACTGTATCATTCTCTTTCTCTTCGGCCTTGGGGTTTGCCTCAGGGGCCAATATGCTCACTGGAGGTACATTCTTTGAGTCTGCAAAGATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTCTGTGAGGCTGTGGATGTCATGGCACCAGGGGGTTCCTTTCCGGCAGTAACTGATTCTGCATGTGTCTCTGTCTTTACTTTGTCATCCCCGCTGCCACACCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCAATGTGCAACTCCTGGTTTGCTGGACTGACTAGGTCAGAGGCCACCTCACCTTTTCTCTTCTCTATGTCAGCATCCTGAACAGCAACACTCCCACCTTCAGGAGGACCACTCTTCAAAGAAAGTATATCATCAAGAGTAACCGTGTCTCCCACAGCCTCTGCGCTGTTCGAGGATGCGCTCCTCCTGATATTTGGGGATGTAATCTTCTGAACTATAGCTTCCAATTTCAATCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTGAGAGTAAC---AGGACAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAGTCTCTCTTAGAGATAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGCGCCTTCCTTTGATGGGTGAAGGAGGCGACTTTTATCTTCAGTGTTACTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGGACACGCCTCCTCATAATTAAGGGGTTTTGAGAAGAATGGTCTTCCTGGCCTGGAAGTCTCAGCATAACATTACTAGGTTTGGATGACTGTGTAGCCTCAACTAGTCCATGTCCATCAGTCTCATGGGGTGGCCCATACCTTTTTTGACTGGACATTCCTGGAGGACCACCGCTTTTGGCTGGAGAAGTCTGCCGAGAAAGATCCCAACAGGATTC---TTGTAATTTCTGGGAGCCATGCTTTAATTCCATGCCCTTGTTAGGCAGACCATCACTAGACAATAGGCAGCG-CCAGTCTCCTGAGCGCGTGGGTCATGGTAAGTCCCTACCGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAGAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGTGGTCCCTCCTGTCTGTGCTGTGCTGCAGCAATTACTCCCTGAGCAGAACCGCTGCTCCAGTCTTTATACTCCTCTGGTTGCTGTTGGTACATCTGTCTCTTATAATGCAGCTGAGAATTCAAACCTGCGTTTGGGTCCCCATAAGCATGAGCCCGAGTATTTGCATGATAAGCGGAGGCCAGGCTTTCTGAGTTGGGAGAAAAGGGAGCATGCAAAGAACTCCGGTTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCGCCCAGGAGACATCTTCAATTTTTCTGCAAAGTCATGATATTGAGAAGGAGACCTACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGGAACCCGCCACATTGGCGTGGGTCTGCTGTC---TTGTAGGC-GTAGTCTGAAAGGGCATC-TGGGTTGCTGCTCCAGGGTTGGCACTGCCACGGTAAGACTCATGCTTAATGCTAGAAGGATGGCAGTGTGGTCTCCAGATTTCTTGTTGGTGAAACTAGCTTGGGATTTAGACTGTTCAAAGTCCTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTTGTTTCCATGGACACCAAACCACCTGGAAGAATGACCGACTGACTTAAACTTGGATTGAGACGGTCATTCCTCCCAATCCTGGTGTCGGCACTCATATGTCCCAGTGAGTGAGCCCCTGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAGCCCCCAGGTTCATGGGCTGATAACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGTCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGGGGATTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCTCCTGCTAGCTAATTCATTGGTTTGACTAACCAAGACGTTGGGCCTTGAGGATCCTTCTAGGCTACCAGCCATCCCCTGATGCTCCTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCCTGAAGCACTTCCTGCAGGAGGCTTGGGAACTTTTCATTTCTACCCTTTCGTTCCCCATGGCCAGTGAAATCTCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACAGATGACCCAAAACTATCTTTGTAACTATAGCGCAGACTTCCAGGAGATTTGCTAGGCTCAGTTCTGCTTGTAAAACCAGGGCCTGCTGCAGAGTGGCCACTCTGGCCATTTCCCTCTCCATTATGGTTGGAG---TTGTTATCGCCATTCTTGTTTCCTTTGCTCCCTCCTCCTCCTGCAGGCTCTGGCTGGGGAAGTGATGCATGACTGGTTTCCTTTGGCCCACCATTGCTAGGTGGCCTTTGAGTGGCTGCAGAATCATCCTCTTGGGAGCCTTTATCTTGTCCACCAGGCTTTTCTACCCGACTTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTGACCTTTGGGTTCCCGTCGGATGACAATGGCATGTCCTTAGCACCTGGTGAGGTGGCCTCTTCTCTAGCTGCGGGACTAGCATTGAGTCTGGGGGGTTCATTCTGAGCACCTTGTGCCGGTGAGGAGCCAGCTTTCTCTGAGGCTCCACCTTTGTAGGTGGTGTCAGAGCTGGTGCTCTGGCCACTTAGTTGCCGCACCCTCTCACCTTGATCCTCTGAACTGCTGGAGCAGCCTCCATCTAACGATTCTGCCATAGGGGACTTCAGCTGTTCTTCAGGTTGTGAGGAGCCTTCAGAGTTTGTGCAGCTATCTACTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGTACAGTGTTAGGAAGATTGGCCACTTGAGTACTCAGAGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGTACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCGGCATGAGAATTAGGACTGGGCATCATTGATGGGGTTGGACTGAGTTGAGGCATTAACTGTAAAATTCTGTTTCTGGAACCCATGGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCAGTCTGCATGAGAGGAGATGGGGTAGAACTACAGCTTGGAGACTGAACCACAGAGGCAGCGGGGGAAGGGTTAGAAATGGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGCTGGTTGTACTGCCCCACCTGGCTTTGCAGGGGCAGCTTGGTG---GCAGCATTGGTATACTGCATCACATGCTGAGGAGGG------tgttgttgctgctgcg------------------------------------------------gttgctgctgctgctgcccctgttgG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTTTTCATAGATTGAGGCTGATAGCTATAATTGGATTGTGTTCCATAAGCCTGTGCATTAGAACCCACGTTGTGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGCTGTGGTGAAGGGAaggaggaggaggaggaggaggaAGCAGAAGACTGGTAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGTAGATGGGATGAGCTGGATGCTGGCTGGCCAGTGGCCTGCGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTCAACTGCTGGACT-------------------------------------TGtgctgctgctgctgctgctgctgctgGCTGGAAGCCTGCTGTTGGTACTGAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAGTGCGACACACCGCCAAGGCCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGAGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGTAGCCACGGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACCTTGATGGCCAGAGGTCTCGCTAGCCATCGTTGCTGCAGCAGCTGCTGCTCCTCGTCGTccaccgccactgtta---ctgccactgccaccactactgccacctgcacctccaAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCCTCTATCCGGGATGAGCTGTGTACCTCCTGTGGGTAGCTTTGCTGGTTTCCGTGGTAACTGCTTTGCTCTCTAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAACAG--AAGAAAA---GAAAGAAAAACATTAGACATGCATCTCCTTGGTACAAATAAAATCAAGTCTAGATGA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5751912 5942 + 108171978 ACAA-----ATCTTCCAGATTACCTACTTCATTTTCTGTCTAT---CATTTGCGACTAGAGACTT-TAATTTGGAGGAATAATCATA-TGATATGTAA---------------GAATAAAA--------------AG------ATGGAAGAAATGTAATCAAAATGAAGTAACAA--AAATCC--------------CAAGCTGGTA--AGAGATTTCTCCTACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCGTAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACATCCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCGGGGCCACCTTCTGAAGTAGTCGGCACGGAGGGCTTTGAGTCCAAAGCAGTCTTTTCGCTGCTGCCCTCAGTGGTTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGGCCTCCACCACAGTCTTCAGAGCGGTGGCGTCGCTTAAACCTGGGGTGTGCGGCCAGActcctctgctcctt------ctgctgctgc------tcctcttcctcctcAGTGTCTGTCTTGGAGCCGTTAGAAGCACTTTTGTGCCGTACCTTCACTTTGCTCTGCATTTCTGAGGCTCTCTTAGGAGGTGGATTCTTCGGGAGAGTGGCTGCATAATCCTGGGGATAAAAGGGTCCAAAGAGGTCACCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACAGAAGACTCTGTCACAACAGGTCCCTGCAGCATGAAGGATGAAGCTGGGAGTGCCTTGCTTTCAGTGCTACTGGGTGGAGGGGTCAGTGACCTCTGACCCTTCCGACCCCTCACTAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTTACTACATGGATATAAGGGAAAAAAGACTTATTCTTGGCATCAGTTTTATCCAGTGGCTGGGTGGCATACTTGAGTTTGATCTCAGGTTCTTGGGGTTCTACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTTGGCTGGGCCCCAGGCTTTCTTCTCTCTCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGAGGGGGCTGAGGGGGCGGAG------------GTGGCGGCTGCTGTTG---TTTCTTTTGTTTATTCACACTACCAATGGGTCTACCCTTCTTCTTTCCTGATGGGAAATATCCTTTTGGGGGGAAACCCTCTTGTTTGGGCGAAATTGTAACAGTATCGTTCTCTTTCTCTTCAGTCTTGGGATTTGCCTCAGGGGCCAATATGCCCACTGGAGGTACATTCTTTGAGTCAGGAAAGATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTTTGTGAGGTTGCAGATGTCATGACACCAGGGGGTTCCTTTCCGGTAGTAACTGTTTCTGGATGTGTCTCTGTCTTCACTTTGTCGTCCCCACCGCTACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCAACATTCAACTCCTGGTTTGTTGGACCTACTAGGTCAGATACTACCTCACCTTTTCTCTTCTCCATGTCGGCATCCTGAACAGCAACGCTCCCACCTTCTGGAGGACCACTTTTCAAAGACAAGATATCATCAAGTGTAACCGTGTCTCCCCCAGCCTCTGCACTGTTCGAGGATGCACTCCTCCTAATATTTGGGGATGTGATCTTCTGAACTATAGCTTCCAATTTCAATCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTTTTAGCAGGGCCTGTGAGGGTAACGGCGGGGCAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGATAGACTTGATGTCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGTGCCTTCTTTTGATGGGTGAAGGAGGCGTCCCCTATCTTCAGTGTTGCTGTTCTTTATATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGGACACGCCTCCTCATGATTAAGGGGTTTTGAGAAGAATGATCCTCTTGACCTGGAAGCCGTAGCATAACATTACTGGGTTTGGATGACTGTGTAGACTCAGCTAGTCCATGTCCATCAGTCTCATGGGGTGGCCCATACCTTTTTTGACTGGACATTCCTGGAGGACCACTGCTTTTGGCTGGAGAAGTTTGTCGAGAAAGATCCCAACAAGATTC---TTGTAACTTCTGGGAGCCATGCTTTAATTCCATGCCTTTGTTAGGCAGACCATCACTGGACATGAGGCAGCGCCCAGCCTCCTGAGCACTGGGGTCATGGTAAGTCCCTACTGGTGGGCCATACATCATACCATCTTTGTCATTTTTAAGAGGGCTGCGTACTCTGTCAAGAAACTGCTGCTGTCGTGGGCTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCGGCAATTACTCCCTGAGCAGAAGTGCTGCTCCAGTCCTTATACTCCTCTTGCTGCTGTTGGTACATCTGTCTCTTATAATGGAGCTGAGAATTCAAACCTGCATTAGGGTCCCCATAAGCATGAGCCCGAGTGTTCGTGTGATAGGCAGAGGCCAGGCTTTCTGAGTTAGGAGAAAAGGGAGCATGTAAAGAACTCCTGTTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCCGGGCCTCTGCTCCTTCCAGGAGACATCTTCAATTTTTCTGCAAAGTCATGATACTGAGAAGGGGACCGACCCCTCATGCCCTCTCGACCACCAACTCTGCCAGGGACCCGCCGCATTGGTGTGGGTCTGCTGTC---TTGTGGGCCGTAGTCTGAAAGGGAATCATGGGCTGCTGCTCCAGGGCTGGCATTGCCACGGTAAGACTCATGCTTGATGCTAGCAGGATGGCA--GTGGTCTCCAGATTTCTTGTTGTTGAAGCTAGCTTGGGATTTGGATTGTTCAAAGTCTTCTTCTTTTATCTGCCCACTCTGAGATTTCAGCTTTGTTTCCATGGACACCAAACCACCTGGAAGAATGACCGACTGACTTAAACTTGGATTGAGACGTTCATTCCTCCCAATTCTGGTGTCAGCACCTATGTGTCCCAGTGAGTGAGCCCCCGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCGTTCAGAGAGGGAACCCCCAGGCTCATGGGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGCCAAATTGATCTGTTTCATTTCAGGAGCTGCGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGTGGGTTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTACTAGCTAATTCATTGGTTTGACTCACTAAGACATTGGGCCTTGTGGTTCCTTCTAGGCCACTAGCCATCCCCTGATGCTCCTGAGCACTCCTAGAATATCTCCGGTCAGGATGGTGGTGGTAGCCCTGAAGCACTTCCTGAAGGAGGCTCGGGAACTTCTCATTTCTACCCTTTCGTTCTCCATGGCCAGTGAAATCCCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACAGCTGACCCAAAACTATCTTTGTAACTATAGCGTAGGCTTCCAGGAGATTTGCTAGGTTCAGTTCTTCCTGTAAAACCAGGGCCCACTGTGGAGTGGCCACTCTGGCCATTTCCCTCTCCATTATGGTTGGAG---TTGTTATCTCCATTCTTGTTTCCTTTGCCC---CCTCCTCCTGGAGGTTCTGGCTGTGGAAGTGAGGTGTGGCTGGTTTCCTTTGCCCCACCATTGCTAGGTGGCCTTTGAGTGGCTGCAGGGTCATCCTCTTGGGAGCCTTTATCTTGTCCACCAGGCTTTTCTACCCGACTTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTTTTCTCATTGACTTTTGGGTTCCCCTCGGATGACGATGGTGTGTCCTTAGCACCTGGCGAGGTAGCCTCTTCTCTTGCTGCGGGACTGGCACTGAGTCTGGGGGGTTCGTTCTGAGCACCTGGTGCTGGTGAGGAGCCAGCTTTCTCTGAGGTTCCACCCTTGTAGGTGGTGTCAGAGCTAGTGCTCTGGCCACTCAGTTGCCGCACTCTCTCACCTTGGTCCTCCGAACTGCTGGAGCAGCCCCCATCCAGTGACTCTGCCATAGGGGACTTCAGTTGTTCTTCAGGCTGTGAGGAACCTTCGGAGTTTGTGCAGCTATCTGCTTTCTTA---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGTGTCAGAGCATCAGAAAGTAACATGTGCTGGACAGTATTAGGAAGATTGGCCACTTGAGTACTCAGGGCACTCAAACTACTCAAACCAGGATCTGTCAATCGCTTTTCTGGCACTCCTTCTAGTCCAAACCCTTTGAAGCCTGCAGCATGAGAATTAGGACTGGGCAGCATTGATGGAGTTGGACTGAGTTGAGGCATTAACTGTAAAATTCTGTTTCTGGAACCCATGGGCACACTGCCTTGTCCACACTGGAGGTTCTCCCCACTCTGCATTAGAGGAGATGGGGTGGAGCTACAGCTCGGAGACTGTACCACAGAGGCAGCTGGAGAAGGGTTAGAAATAGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTTACAGGAACTTCGGGCTGGCTGTACTGCCCCACCTGGCTTTGCAGGGGCAGCTTAGTG---GCTGCGTTGGTATACTGCATCACATGCTGAGAGGGA------tgttgttgttgttgttgttgttgctgctgttgctgt------------------------tgttgctgctgctgctgttgcccctgctgG---GTTCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTATAATTTGATTGTGTGCCATAAGCCTGTGCATTAGAACCCACATTATGTCCTTCATACTGGGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGTTGTGGTGAAGGGAaggaggaggaggaggaggaggaTGCAGAAGACTGGTAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGTGGCAGAGGATGGCAGAGTTGAAGGCCGCTGCATTGGCTGGAGATGGGATGAGCCGGACGCTGGCTGGCCAGAAGCTTGTGGCAGAGGCTGATGGGATTGGTAAAGCTGTTGTCTCAACTGTTGTACT------------------------------------------TGCTGCTGC------TGCTGTTGGCTGGAAGCCTGCTGTTGGTACTGAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGTTGATAATGAGACACACCACCAAGAGCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTGCTCCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGTTGTGGGGTTCCTGTAGCCACAGGGTCTTTGTTGCCTGCCATGTAATAAAAATCTCCAGCCTCTTTTCTGAAACCCTGGTAACCTTGGTGGCCAGAGGTTTCACTAGCCATCGCTGCAGCAGCAGCTGCTGCTCCTCGTCGTccaccaccactgcca---ctgccactaccgccactactgccacctgcacccccaAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTATCCGGGATGAGCTGTGTACCTCCTGTGGGTAGCTCTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAACAGTACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG--AAGAAAA---GAAAGAAAAACATTAGACATGCATCTC---AGCATAAATAAAATCAAGTCTAGATGA i micMur3.chr7 I 2653 I 328 s proCoq1.NW_012136747v1 5118129 5961 - 6317780 ACAA-----ATCTTCCAAATTGCCTACTTCATTTTCTGTCCAT---CTTTTGGGACTAGAGACTTCTAATTTGGAGGAATAATCATA-TGATACataa---------------gaataaaa--------------a----------gaagaaatggaatcaaaatgaagtaataa--aaatCC--------------CAAGCTGGTA----AGATTTCTCCTACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACATCCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCGGGGCCACCTTCTGAAGTGGTTGGCACGGAGGGCTTTGAGTCCAAAGCAGTCTTTTCGCTGCTGCCCTCAGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGGCCTCCACCACAGTCTTCAGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGCGGCCAGGctcctctgctcctt------ctgctgctgc------tcctcttcctcctcAGTGTCCGTCTTGGAGCCGTTAGAAGCACTTTTGTGCCGTACCTTCACTTTGCTCTGCATTTCTGAGGCTCTCTTAGGAGGTGGATTCTTCGGGAGAGTGGCTGCATAATCCTGGGGATAAAAGGGTCCAAAGAGGTCACCCATGTTGCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACAGAAGACTCTGTCACAACAGGTCCCTGCAGCATGAAGGATGAAGCTGGGAGTGCCTTGCTTTCAGTGCTGCTGGGTGGAGGGGTCAGTGACCTCTGACCCTTCCGACCCCTCACTAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTGTTTACTACATGGATATAAGGGAAAAAAGACTTGTTCTTGGCATCAGTTTTATCCAGTGGCTGGGTGGCATACTTGAGTTTGATCTCAGGTTCTTGGGGTTCTACAATGGGAACTGCTTGTTTGGTTTTTCGCTTCCTTGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGTTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATCTGAGGGGGCTGAGGGGGCGGAG------------GCGGTGGCTGCTGTTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTACCCTTCTTCTTTCCTGATGGGAAATATCCTTTTGGGGGGAAACCCTCTTGTTTGGGCGAAATTGTAACCGTATCGTTCTCTTTCTCTTCAGCCTTGGGATTTGCCTCAGGGGCCAATATGCCCACTGGAGGTACATTCTTTGAGTCAGGAAAGATTAAAGGTGCTGTTCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACCAGGCTTTTGTGAGGTTGCAGATGTCATGACACCAGGGGGTTCCTTTCCGGTTGTAACTGTTTCTGGATGTGTCTCTGTCTTCACTTTGTCGTCCCCACCACTACGCCACTCTTCTGAAGACCTAGGAAGAGGTTTCTCAACGTTCAACTCCTGGTTTGTTGTACCTACTAGGTCAGATACTACCTCACCTTTTCTCTTCTCCATGTCGGCATCCTGAACAGCAAGGCTCCCACTTTCCGGCGGACCACTTTTCAAAGACAAGATGTCATCAAGCGTAACTGTGTCTCCCCCAGCCTCTGCACTGTTCGAAGACGTACTCCTCCTAATATTTGGGGACGTGATCTTCTGAACTATAGCTTCCAATTTCAATCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTTTTAGCAGGGCTTGTGAGGGTAACAGCAGGGCAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGGACAGACTTGATGTCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGCTTTATCAGTGACTTCTTTTGATGGGTGAAGGAGGCGCCCCCTATCTTCAGTGTTGCTGTTCTTTACATCTTGTGACTGTCTCTTACTGGGAATGGGAGAGATAAAAGAACGGACACGCCTCCTCATGATTAAGGGGTTTTGAGAGGAATGATCCTCTTGACCTGGAAGCCTTAGCATAACATTACTGGGTTTGGATGACTGTGTAGACTCAGCTAGTCCATGTCCATCAGTCTCATGGGGTGGCCCATACCTTTTTTGACTGGACATTCCTGGAGGACCACTGCTTTTGGCTGGAGAAGTTTGGCGAGAAAGATCCCAACAAGATTC---TTGTAACTTCTGGGAGCCATGCTTTAATTCCATGCCTTTGTTAGGCAGACCATCACTGGACATGAGGCAGCGCCCAGCCTCCTGAGCACTGGGGTCATGGTAAGTCCCTACTGGTGGGCCGTACATCATACCATCTTTGTCATTTTTAAGAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCGTGGGCTCTTCCGTGGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATTACTCCCTGAGCAGAAGTGCTGCTCCACTCTTTATATTCCTCTTGCTGCTGTTGGTACATCTGTCTCTTATAATGGAGCTGAGAATTCAAACCTGCATTAGGATCCCCATAAGCATGAGCCCGAGTGTTCGTGTGATAGGCAGAGGCCAGGCTTTCTGAGTTGGGAGAAAAGGGAGCATGCAAGGAACTCCTGTTGGCCCTCTCTGAAAAGGTCATGTGTGGATTCATGTGATGAGGGTCTCCCCCAAGGCCTCTGCTCCTCCCAGGAGACATCTTCAATTTTTCTGCAAAGTCATGATACTGAGAAGGGGACCGACCCCTCATGCCCTCCCGACCACCAACTCTGCCAGCGACCCGCCGCATTGGTGTGGGTCTGCTGTC---TTGTGGGCCGTAGTCTGAAAGGGAATCATGGGCTGCTGCTCCAGGGCTGGCATTGCCACGGTAAGACTCATGCTTGATGCTAGCAGGATGGCA--GTGGTCTCCAGATTTCTTGTTGTTGAAACTAGCCTGGGATTTGGATTGTTCAAAGTCTTCTTCTTTTATCTGCCCGCTCTGGCATTTCAGCTTTGTTTCCATGGACACCAAACCACCTGGAAGAATGACTGACTGACTTAAACTTGGATTGAGGCGCTCATTCCTCCCAATTCTGGTGTCGGCACCTATGTGTCCCAGTGAGTGAGCCCCCGGGTCTCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCGTTCAGAGAGGGAACCCCCAGGCTCATGGGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGCCAAATTGATCTGTTTCATTTCAGGAGCCGTACTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGTGGGTTTTCTAATAGAGACCCAATGCTTTTGTTCAGAAGGCCCCTGTTAGCTAATTCATTGGTCTGACTCACTAAGACATTGGGCCTTGCGGTTCCTTCTAGGCCACTAGCCATCCCCTGATGCTCCTGAGCACTCCTAGAATATCTCCGGTCAGGGTGGTGGTGGTAGCCCTGAAGCACTTCCTGAAGGAGGCTCGGGAACTTCTCATTTCTACCCTTTCGTTCTCCATGGCCAGTGAAATCCCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGTGGCACAGCTGACCCAAAACTGTCTTTGTAACTATAGCGTAGGCTTCCAGGAGATTTGCTAGGCTCAGTTCTTCCTGTAAAACCAGGGCCCACAGTGGAGTGGCCACTCTGGCCATTTCCCTCTCCATTATGGTTGGAG---TTGTTATCTCCATTCTTGTTTCCTTTGCTC---CCTCCTCCTGGAGGCTCTGGATGTGGAAGTGAGGCGTGGCTGCTTTCCTTTGCCCCACTGTCGCTAGGTGGCCTTTGAGTGGCTGCAGGATCATCCTCTTGGGAGCCTTTATCTTGTCCACCCGGCTTTTCTACCCGACTTGTCATGGCTTCCCGGGAGACAATCACCCCAACTGTTTTCTCATTGACTTTTGGGTTCCCCTCAGATGATGATGGTGTGTCCTTAGCACCTGGCGAGGTAGCCTCTTCTCTTGCTGCGGGACTGGCACTGAGTCTGGGGGGTTCATTCTGAGCACCTGGTGCTGGAGAGGAGCCAGCTTTCTCTGAGGCTCCACCCTTATAAGTGGTGTCAGAGCTAGTGCTCTGGCCACTCAACTGCCGCACTCTCTCGCCTTGGTCTTCTGAACTGCTGGAGCAGCCTCCATCCAGTGACTCTGCCATAGGGGACTTCAGTTGTTCTTCAGGCTGTGAGGAACCTTCAGAGTTTGTGCAGCTATCTGCTTTCTTA---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGTGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTATTAGGAAGATTGGCCACTTGAGTGCTCAGGGCACTCAAACTACTCAAACCAGGATCTGTCAATCGCTTTTCCGGCACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCAGCATGAGAATTAGGACTGGGTAGCATTGATGGAGTTGGACTGAGTTGAGGCATTAACTGCAAAATTCTGTTTCTGGAACCCATGGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCACTCTGCATTAGAGGAGATGGGGTAGAGCTACAGCTTGGAGACTGTACCACAGAGGCAGCTGGAGAAGGGTTAGAAATAGGGCTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACTTCGGGCTGGCTGTACTGCCCCACCTGGCTTTGCAGGGGCAGCTTGGTG---GCTGCATTGGTATACTGCATCACATGCTGAGAGGGA------TGTTGTTGTTGTTGTtgctgttgctgctgctgctgttgctgctgctgctgttgctgttgctgctgctgctgctgctgctgcCCCTGCTGG---GTCCCTTGTGGAATCTTTGCCTGTTCAAAATTCTTCATAGATTGAGGCTGATAGCTATAATTTGATTGTGTGCCATAAGCCTGTGCGTTAGAACCCACATTATGTCCTTCATACTGGGATCCGGTATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGGCTAAAACGTTGTGGTGAAGGAAaggaggaggaggaggaggaggaggCAGAAGACTGGTAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGTGGCAGAGGATGGCAGAGTTGAAGGCCGTTGCATTGGCTGGAGATGGGACGAGCCAGACGCTGGCTGGCCAGTAGCTTGTGGCAGAGGCTGATGGGATTGGTAAAGCTGTTGTCTCAActgctgtact------------------------------------------tgctgctgc------tgctgttggctggaagcctgctgttggtactgAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAATGAGAAACACCACCAAGAGCAGAGTGCTGTGCTTGAAACTGGCCCACATGACCCTCACTCCCATATTGATTGCCAAAGCTGCTGCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGTTGTGGGGTTCCTGTAGCCACAGGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTTCTGAAACCCTGGTAACCTTGGTGGCCAGAGGTTTCACTAGCCATCGCTGCAGCAGCAGCTGCTGCTCCTCGTCGTccaccaccactgcca---ctgccactgccaccactactgccacctgcACCCCCAAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTATCCGGGATGAGCTGTGTACCTCCTGTGGGTAGCTCTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTAGAAATAG--AAGAAAA---GAAAGAAAAACATTAGACGTGCACCTT---GGCATAAATAAAATCAAGTCTACATGA i proCoq1.NW_012136747v1 I 3695 I 71 s otoGar3.GL873526 36322670 5967 - 42659167 GCAA-----ATCTTCCAAATTACCTATCTCATTTTCTGTCTAT---CATTCAGGATTAGTGCCTT-TAACTCAGAGGAATAACCCTGTTGATA---AA---------------TAATAAAA--------------AG------ATGGAACAAATGGGACCAAAAAGAAGTAACAA--AACTGC--------------CAAGCTCCTA--AGAAATTTCTCTTACTCACCATTTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATACAGCCTGCCACAAACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACAGAGGGCTTTGAGTCCAAAGCAGTCTTTTCGCTGCTGCCCTCAGTGGCTGCTTTTTTACAAGGAAGCCCCCTGGACAAGGACCGGGGGCCTCCGCCACAGTCTTCTGAGCGGTGGCGCCGCTTAAACCTGGGGTGTGTGGCCAGGCTCCTCTGCTCCTT------CTGCTGCTGCTGCTGTTCCTCTTCCTCCTCAGTGTCCGTCTTGGAGCCGTTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCCGAGGCTCTCTTAGGAGGCGGATTCTTCGGGAGAGTGGCTGCATAATCTTGAGGATAAAAGGGTCCAAACAGGTCACCCATATTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACCAGGTGCCCCATAACAGAAGACTCTGTCACAACAGGTCCCTGCAGCATGAAGGATGAAGCTGGGAGTGCCTTGCTTTCAGTGCTGCTGGGTGGAGGGGTCAGTGACCTCTGACCCTTCCGACCCCTCACCAATTTGGTTTGTTCTTCTTCTTCCGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTTACTACATGAATATAAGGGAAAAAAGACTTGTTCTTGGCATCAGTTTTATCCAGTGGCTGGGTGGCATACTTGAGTTTGATCTCCGGTTCTTGGGGTTCTACAATGGGAACTGCTTGCTTGGTTTTTCGCTTCCTTGGCTGGGCCCCAGGCTTTCTTCTCTCCCTCCTTTGCCTCTGCTTTTTTGGCTTTGGCTCTCCATCTGCAGAACCTTCTGGTATTTGAGGGGGCTGAGGGGGTGGAG------------GCGGTGGCTGCTGTTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTACCCTTCTTTTTTCCTGATGGGAAATATCCCTTTGGGGGGAAACCCTCTTGTTTGGGTGAAATTGTAACTGTATCGTTCTCTTTCTCTTCAGTCTTGGGGTTTGCCTCAGGGGCCAGGATGCCCACTGGAGGTACATTCTTTGAGTCAGGAAAGATTAAAGGTGCTGTTCCACCCAAGGAACCATCTGGTCTCCCTTGGCTACTACCAGGTTTTTGTGAGGTTGCAGATGACACAACACCAGGGGCTTCCTTTCCAGTAGTAACTGTTTCTGGATGTGTCTCTGTCTTTACTTTGTCATCCCCGCCGTTACGCCACTCTTCTGAAGACCTTGGAAGAGGTTTCTCAATGTTCAATTCTTGGTTTGTTGGACCAGCTAGGTCAGCTACTACCTCACCTTTTCTTTTCTCCATCTCAGCATCCTGAACAGCAATGCTCCCACCTTCTGGAGGACCACTCTTTAAAGACAGGATGTCATCAAGTGTAACTGTGTCTCCTCCAGCCTCCGCACTGTTGGAGGATGCACTCCTCCTAATATTTGGGGACGTGATCTTCTGAACTATAGCTTCCAATTTCAATCCCCGTCCTTTCCGTGGGGGCAGTATTTTGGTTTTAGCAGGGCTTGTGAGGGTAACAGCAGGGCAGTTTCTATTATCTGGACTTGGAAAGTCCTTGGAAGAATCTCTCTTAGGGACAGACTTGATATCCTGACTGTGAGAGAGGTGGGCGTAGGAATTGAATGACTTCTCTGGGCCTTCTTTTGATGAGTGAAGGAGGCGCCCCCTATCATCAGTGTTGCTGTTCTTTATATCTTGTGACTGTCTCTTACTGGGAATCGGAGAGATGAAAGAACGGACACGCCTCCTCATGATTAAGGGGTTTTGAGAAGAATGATCCTCTTGGCCTGGAAGCCTTAGCATAACATTACTGGGTTTGGAGGACTGTGTAGACTCGGCTAGTCCATGTCCATCAGCTTCATGGGGTGGCCCATACCTTTTCTGACTGGACATTCCTGGAGGACCACTGCTTTTGGCTGGAGAAGTTTGCCGAGAAAGATCCCAACAAGATTCCTGTTGTAACTTCTGGGAGCTATGCTTTAATTCCATGCTTTTGTTAGGCAGACCGTCACTTGACATGAGGCAGCGCCCTGCCTCCTGAGCGCTGGGGTCGTGGTAAGTCCCCACCGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAGAGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGACTCTTCCGGAGCCCCTCCTGCCTGTGCTGTGCTGCAGCAATCACTCCCTGGGCAGAAGTGCTGCTCCAGTCTTTATACTCCTCCTGCTGCTGTTGGTACATCTGTCTCTTATAATGGAGCTGAGAATTCAAACCTGCATTAGGGTCCCCATAAGCATGAGCCCGAGTGTTTGTGTGATAGGCAGAGGCCAGGCTTTCTGAGTTGGGAGAAAAGGGAGCATGTAAGGAACTCCTGTTGGCCCGCTCTGAAAAGGTCATATGTGGATTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCTTCCAGGAGACATCTTCAACTTTTCTGCAAAGTCATGATACTGAGAAGGGGACCGACCCCTCAAACCCTCTCGACCACCAACTCTGCCAGGGACCCGCCGCATTGGTGTGGGTCTGCTGTC---TTGTGGGCCATAGTCTGAAAGGGAATCATGGGTTGCTGCTCCAGGGCTGGCATTACCACGGTAAGACTCATGCTTGATGCTAGTAGGATGGCA--GTGGTCTCCAGATTTCTTGCTGTTGAAACTAGCTTGTGATTTGGATTGTTCAAAGTCTTCCTCTTTTATCTGCCCACTCTGGGATTTCAGCTTTGTTTCCATGGACACTAACCCACCTGGAAGAATAACTGACTGACTTAAACTTGGATTGAGTCGTTCATTCCTCCCAATTCTGGTGTCGGCACCCATGTGTCCTAGTGAGTGAGCCCCTGGGTCCCTGACAATCTGTCTTAGTGGAGAAATATCACAGATCACTGATCTTCTTTCAGAGAGGGAACCCCCAGGCTCATGAGCTGATGACTGAGATTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGCCAAATTGATCTGTTTCATTTCAGAAGCTGTGCTGCTTGATTTCCTTTCCCAGGGGCCCCAGTGTGGGTTTTCTAAGAGAGAGCCAATACTTTTGTTCAGAAGACCCCTGCTAGCTAATTCATTGGTTTGACTCACTAGAACATTGGGCCTTGTGGTTCCTTCTAGGCCACTAGCCATCCCCTGATGCTCCTGAGCACTCCTGGAATATCTCCTGTCAGGGTGGTGATGGTAACCCTGGAGCACTTCTTGGAGAAGGCTTGGGAACTTCTCATTTCTACCCTTTCGTTCTCCATGGCCAGTGAAATCCCCCTTTTCTTGCCCTGTAGGATACTGAGGAAAGCCACTGACATTTCGCGGCACAGCTGACCCAAAACTATCTTTGTAACTATAGCGCAGGCTTCCAGGAGATTTGCTAGGCTCAGTCCTTCCTGTAAAACCAGGGCCGACTGTGGAGTGGCCACTCTGGCCATTTCCCTCTCCATTATGGTTGGAA---TTGTTATCTCCATTCTTATTTCCTTTGCTC---CCTCCTCCTGGAGGCTCTGGCTGTGGAAGTGATGTGTGGCTGGCTTCCTTTGCCCCACCATTGCTAGGTGGCCTTTGAGTGGCTGCAGTATCATCTTCTTGGGAGCCTTTATCTTGTCCACCAGGCTTTTCCACCCGACTTGTCATGGCTTCTCGGGAGACAATCACCCCAACTGTCTTCTCATTGACTTTTGGGTTCCCCTCTGATGACGACGGTGTGTCCTTAGCACCCGGCGAGGTAGCCTCTTCTCTTGCTGTGGGACTAGTGCTGAGTCTGGGGGGTTCATTCTGAGCACCTGGTGCTGGGGAGGAGGCAGCTTTCTCTGAGGTTCCACCCTTATAGGTGGTGTCAGAGCTAGTGCTCTGGCCACTCAACTGCCGCACTCTCTCACCTTGGTCCTCTGAACTGCTGGAGCAGCCCCCATCCAGTGACTCTGCCATAGGGGACTTCAGCTGTTCTTCAGGCTGTGAGGAGCCTTCAGAGTTTGTGCAGCTATCTGCTTTCTTG---GAAGAT---GAGGGCCTCTTGGAGGTCTTCTTCTGAGGAGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTATTAGGAAGATTGGCCACTTGAGTACTCAAGGCACTCAAACTACTCAACCCAGGATCTGTCAGTCGCTTTTCTGGCACCCCTTCTAGTCCAAACCCTTTGAAGCCTGCAGCATGAGAATTAGGACTGGGTAGCATTGATGGGGTTGGACTGAGTTGTGGCATTAACTGTAAAATTCTGTTTCGAGAGCCCATGGGCACACTGCCTTGCCCACACTGGAGATTCTCCCCACTCTGCATTAGAGGAGATGGGGTAGAGCTACAGCTTGGAGACTGAACTACAGAGGCAGCTGGAGAAGGGTTAGAAATGGGGCTGAAGTTTTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCGGGCTGGCTATACTGCCCCACCTGGCTTTGCAGGGGCAGCTTGGTG---GCAGCGTTGGGATACTGCATCACGTGCTGAGGAGGA------tgctgctgttgctgttgttgttgttgttgctgc---------------------------tgctgctgctgctgctgctgcccctgctgG---GTCCCTTGCGGAATCTTTGCCTGTTCAAAATTCTTCATGGATTGAGGCTGATAGCTGTAATTCGACTGTGTGCCGTAAGCCTGTGCGTTAGAACCCACATTATGTCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGTCCAGACTGACTAAAACGCTGTGGTGAAGGGAAGgaggaggaagaagaagaagaagcagaagaCTGGTAGTGTTGGCCAAACTGACCCACTCTTAACTGGTAACCAGCAGCAGAGGATGGCAGAGTTGAGGGCCGCTGCATTGGCTGGAGATGGGACGAGCTGGACACTGGCTGCCCCGTAGCTTGTGGTAGAGGCTGATGGGATTGGTAAAGCTGTTGTCTCAACTGCTGTACTtgctgct---------------------------gctgctgctgctgctgc------tgctgctgGCTAGAAGCCTGTTGTTGGTACTGAGCACTCCCTGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAATGAGAAACACCACCAAGAGCAGAGTGCTGTGCTTGAAATTGGCCCACATGACCCTCACTCCCATACTGATTGCCAAAGCTGCTTCCCTGGGGGGGTCCATAGCTCTGCACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCCGTGGCCACATGGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCCTCTTTCCTGAAACCCTGGTAACTTTGGTGGCCAGAGGTTTCACTGGCCATTGCTGCAGCAGTAGCTGCTGCTCCTCGTCGTccaccactactgcca---ctgccactgctgccactaccaccaccTGTACCCCCGAAATTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCTATCCGAGATGAGCTGTGTACCTCCTGTGGGTAGCTCTGCTGGTTTCCGTGGTAACTGCTTTGCTCTCGAAAGGACTGCATACTGTTCAACAGCACAGAAGCAGGCCAACAGCCCTCCTAGAAATAG--GAAAAAAGGGGAGGGGAAAGCATTAGACATGTACCTCCTGAGCACAATTAAAATCAAGTATAGATGA i otoGar3.GL873526 C 0 I 12 s mm10.chr15 82851358 5992 + 104043685 ATAAGCTACACCTTCTAAA---ACCACTTCCTTTTCTGTTTAT---CATTTGGG----------T-CAA-------GAAAGAACTTG-TGATGTGAAA---------------GAACAAAG--------------GCCAAGGTGTAAAAAAACAGGGCCAAA----GTAAAGTGACCAGAAAC--------------CAAGCTGGTA--AGGGGTTTCTCTTACTCACCATCTCTCTGGCGATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAGACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCGTTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGCCCACCTTCTGAAGTGGTAGGTACAGAGGGCTTTGTGTCTGAAACAGTCTTTTCACTGCTGCCCTCCGTGGCTGCTTTTTTACAAGGGAGCCCCCTGGACAGGGACCGAGGACCTCCACCACAGTCTTCTGAGCGGTGGCGCCGCTTGAACCTAGGATGAGCAGCCAGGCTCCTCTGCTCCTT------CTGCTGCTGCTGC---TCCTCCTCCTCCTCAGTGTCAGTTTTAGAACCATTAGAAGCGCTTTTGTGCCGAACCTTGACTTTGCTCTGCATTTCTGAGGACCTCTTAGGAGGTGGATTCTTCGGAAGAGTGGCTGCATAATCTTGGGGATAAAAGGGTCCAAAGAGGTCACCCATGTTACGGTAACTGGCCCACTTGCCACAGAGACAGCAAACCAGGTGCCCCATAACAGAAGACTCTGTTACCACAGGCCCCTGCAGCATAAAGGATGAAGCTGGGAGCACCTTGCTTTCTGTGCTGCTGGGGGGAGGGGTCAGAGATCTCTGACCCTTCCGGCTCCTCACCAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACAGCTCCAAGTTCACACTTATTTACTACATGGATGTAAGGGAAAAAAGACTTGTTCTTGGCATCAGTTTTATCTAGTGGCTGGGTAGCGTACTTTAGCTTGATCTCTGGTTCTTGAGGTTCTACAATGGGAACTGCTTGTTTGGTTTTCCGCTTCCTTGGCTGGGCCCCAGGCTTCCTTCTCTCCCTCCTTTGCCTCTGCTTTTTTGGCTTTGGCTCCCCATCTGCAGAACCTTCTGGCATCTGAGGGGGCTGAGGAGGTGGAG------------GTGGTTGCTGCTGCTG---TTTCTTTTGCTTATTGACACTACCGATTGGTCTCCCCTTTTTCTTTCCTGATGGGAAATACCCTTTAGGGGGGAAACTTTCTTGTTTGGGTGAAATCATGACTGTATCGTTCTCTTTCTCTTCAGCCTTGGGATTTGCCTCAGGGGCCAATATGCCCACTGGAGCTACATTCTTTGAGTCAGGAAAGATTAGTGGTGCTGCCCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACCACCAGGCTTCTGTGAAGCTGTGGATGTCATAGTACCAGAGGGTTCCTTTCCAGTAGAAGCTGTTTCTACATGTGCCTCTGTCTTGACTTTGTCATCCCCACTGCCACGCCACTCTTCAGAAGGCCCTGGAAGAGGCTTCTCAACATTCGATTCCTGGTTAGTTACACTGACTAGGTCAGATACCACCTCACACTTTCGCTTTTCCATCTCAGCCTCTTGAGTAGCCACAGTGCCACCTTCAGGAGGACCACTCTTTAGAGATAGTATATCATCCAGTGTGACTGTGTCTCCCCCAGCCTCAGCACTGTTTGCAGATGCACTCCTCCTAATATTTGGAGATGTGATCTTCTGAACTATAGCTTCCAATTTTAATCCCCGTCCCTTCCGTGGGGGCAGTATTTTGGTCTTAGCAGGACTTGTCAGGGTAACAGCAGGACAGTTTCTATTGTCTGGGTTTGGAAGGTCCTTGGAGGAATCTCTCTTAGGAATAGACTTGATATCCTGACTGTGAGAAAGATGGCTGTAGGAATTGTATGCTTTATCGGCACCTTCTTTTGATGGGTGGAGGAGGCGCCCTTTATCATCAGCGTTACTGTTTTTTACATCTTGTGACTGTCTCTTACTGGGAATAGGGGAGATAAAAGAACGAACCCGCCTTCGCATGATTAAAGGATTTTGAGAAGAATGATCCTCTTGACCAGGAAGCCGTAACATGACGTTACTAGGTTTGGATGACTGTGCAGACTCGGCTAGTCCATGTCCATCTGGCTCATGGGGTGGCCCATACCGTTTTTGATTAGACATTCCTGGAGGACCACTGCTTTTGGCTGGAGAAGTCTGCCGAGAAAGATCCCAACAAGACTC---TTGTAACTTCTGAGAGCTGTGCTTCAATTCCATGCTTTTGGCAGGCAGACCATCACTAGACATGAGACAGCGCCCAGCTTCCTGAGTGCTTGGGTCATGATACGTACCTACTGGTGGGCCATACATCATTCCGTCTTTGTCATTTTTCAGGGGGCTCCGTACTCTGTCAAGAAACTGCTGCTGCCTTGGGCTCTTGCGTGGGCCTTCCTGCCTATGCTGCGCAGCAGCGATCACTCCCTGAGCAGAACTGCTGGCCCAGTCTTTATACTCCTCTTGTTGCTGTTGGTACATCTGTCTCTTATAATGGAGCTGGGAATTCAAACCGGTATTAGGGTCCCCATAAGCATGAGCCCTGGTGTTTGTGTGGTAAGCAGAGGCCAGGCTTTCTGAGTTGGGAGAAAAAGGAGCATGTAAAGAACTCCTATTGGCCCTCTCTGAAAAGGTCATATGTGGGTTCATGTGATGAGGGTCTCCCCCTGGGCCTCTGCTCCTGCCTGGAGACATCTTCAATTTTTCTGCAAAGTCATGGTACTGAGAAGAGGACCGACCCCTCATAGTCTCCCGGCTACCAACTCTACCAGGGACCCGCCGCATTGGTGTGGACCTGCTATC---TTGTGGGCCATAGTCTGAAATGGAATCATGGGCTGCTGCTCCAGGACTTGCATTGCCACGGTAAGTCTCATGTTTGATGCTGGTAGGATGGCA--GTGGTCTCCAGATTTC---TTGTTGAAACTAGCTTGAGATTTGGATTGTTCAAAGTCTTCCTCTTTTATCTGTCCACTCTGGGATTTCAATTTTGTTTCCATGGACACCAACCCACCAGGAAGAATGACTGACTGACTTAAACTTGGGTTGAGACGTTCATTCCTCCCAATTCTGGCATCAGTACCCATGTGTCCCAATGAGTGAGCCCCTGGGTCCCTGACAATCTGTCTTAGTGGGGATATATCACAGATTACTGACCTCCTTTCAGAAAGGGAGCCTCCAGGCTCATGGGCTGATGATGGAGGTTCTATCTCAAACTTCCTGGGAATGGGATAGTCAGACAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTTGACTTCCTTTCCCATGGTCCCCAGTGGGGATTTTCCAACAGGGATCCAATACTCTTGTTCAGAAGGCCCCTGCTAGCTAATTCATTGGTTTGACTGACTAAGATGTTAGGCCTTGCAGTTCCTTCCAGGCCACTAGCCATCCCTTGATGTTCCTGTGCGCTTCTAGGATACCTTCTGTCAGGATGGTGGTGGTAGCCCTGAAGCACTTCCTGTAGAAGACTTGGGAACTTCTCATTTCTACCCTTTCGCTCTCCATGGCTGCCAAAATCCCCCTTTTCTTGTCCTGAAGGATACTGAGGATAACCACTGACATTTCGTGGTACAGCTGACCCAAAACTCTCTTTGTAACTATAGCGCAAACTTCCAGGAGACTTGCTAGGCTCAGTCCTGCCTGTGAAACTTGGGCCTACTGCGGAGTGGCTACTCGGGCCATTCCCCTCTCCATTGTGGTTAGAGCTATTATTATCACCATTCTTGTTTCCTTTGCTC---CCTCCTCCTGGAGGATCTGGCTGTGGAAGTGATGTGTGGCTGATTTCCTTTACGCCACTATTGCTAGGTGGTCTCTGACTGGCAGCAGGATCATCCTCCTGGGAGCCTTTATCTTGTCCACCAGATTTTTCTACCCGACCTGTCATGGCTTCTCGGGAGACAATCACCCCAACTGTCTTCTCATTGACTTTTGTGTTCCCCTCAGATGACAGTGATGTGTCCTTAGCACCTGGAGAGGCAGCTTCGTCCCTAGTTGCAGGACTGGTACTGAGCCTAGGGGCCTCATTCTGAGCACCTTGTGTTGGTGAGGAGCCAGCTTTCTCTGAAGCGCCACACTTATAGGTGGTGTCAGAGCTAGTGCTCTGGCCACTCAGTTGCCTCACCCTCTCACCTTGATCTTCTGAACTACTAGAGCAACCTCCATCCAATGACTCAGCCATAGGGGACTTTAGTTGTTCTTCAGGCTGTGAGGAGCCTTCTGAGTTTGTACAGCTATCTGCTTTCTTAGATGATGAT---GAGGGCCTCTTAGACGTCTTCTTCTGAGGTGTCAAAGCATCAGAAAGTAACATGTGCTGGACAGTATTAGGAAGATTGGCCACTTGACTACTCAAAGCACTCAAACTACTCAACCCAGGATCAGTCAGCCGCTTTTCCGGCACCCCTTCTAATCCAAATCCTTTGAATCCTGCAGCATGAGAGTTAGGACTGGGCATCATTGATGGAGTTGGACTGAGCTGGGGCATTAGCTGTAAAATTCGGTTTCTGGAACTCATGGGCACATTGCCTTGCCCACACTGGAGATTCTCACCACTCTGCATGAGAGGAGAAGGTGTAGAGCTACAGCTTGGAGACTGAACCACAGAAGCAGCTGGAGAAGGGTTAGAAATAGGGCTGAAATTCTGGTGGAACTGCATGGGAGACCTTACAGGAACCTCAGGCTGGTTGTACTGCCCAACCTGGCTTTGCAGAGGCATCTTGGTG---GCAGCATTTGTGTACTGCATCACATGCTGGGGAGGA------tgttgctgctgctgctgctgttgctgctgttgctgcggctgctgttgctgaggttgtggttgctgctgttgctgctgctgcccctgctgG---TTTCCTGGTGGAATCTTTGCCTGTTCAAAATTTTTCATAGACTGAGGTTGATAGCTATAATTTGATTGTGTTCCATAAGCCTGTGCATTAGAACCCACATTATGCCCTTCATACTGAGATCCAGCATTCACACTGTAACTGCCATCATAGCTTTGTCCAGACTGACTGAAACGCTGTggagaagggaaggaggaggaggaagaggaggaAGCAGAAGACTGGTAGTGCTGTCCAAACTGACCTACTCTTAACTGATAACCA---GCAGAAGATGGCAGAGTTGAGGGCCGCTGCATTGGTTGTAGATGCGATGAGCCAGAGGCTGGCTGTCCAGTGGTTTGTGGCAGAGGCTGATGGGATTGGTAAAGCTGTTGTCTCAACTGCTGTACTtgctgctgctgttgctgctgctgctgctgttgctgctgctgctgctgctgc------tgttgttgGCTAGAGGCCTGCTGTTGATACTGAGCACTCCCAGGAGAGAAAGGCCCTGTGTAATCCTGCTGATAATGAGACACACCACCAAGGGCAGAGTGCTGTGCTTGAAATTGGCTCACATGACCCTCACTCGCATACTGATTGCCAAAGCTGCTCCCCTGGGGAGGTCCATAGCTCTGTACAGGCCCAGAAGGCCTTCGCTGAGGAGGCTGTGGGGTTCCTGCTGCCACTGTGTCTTTGTTGCCTGCCATGTAGTAAAAATCTCCAGCTTCTTTCCTGAAACCCTGATAGCCTTGATGGCCAGAGGTCTCACTAGCCATTGCTGCCGCTGCAGCAGCTGTTCCTCGTCG---ACCGCTACTGCTG---CTGCCAGTGCCACTACTACCACCACCTGCTCCCCCAAAATTCTGGAACATCTGGGCCTGGCGAGGGCTGAACTCTTCTATGCGGGATGAGCTGTGCACCTCCTGTGGGTAGCTCTGCTGGTTTCCGTGGTAACTGCTTTGCTCCCGAAACGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAGCAGCCCTCCTAGAAAGGG--AAAAAAA---GA---AAAAGCATGAGACATGCATCTGCTTGACACAA---AGATCAAGCCTAGAT-- i mm10.chr15 C 0 C 0 s canFam3.chr10 46130532 5936 - 69331447 ACAA-----ATCTTCCAAATTAC----TTCATTTTCCGTCTACTGGTGTGTGGGCCTAGGGGCTT-TCATCTGGAGGAATCATCGTG-TGATACAGAATAAACGGTCAGGCTGGACCCCAG--------------AC------CAAGGAGAGAAGGAGGGAA----GGGGACAAG--CCAGGC--------------AGAGCGAGCCCCAGAGGGACGCCATACTCACCATCTCTCTGGCTATTTCCAGCGCCTCCTGCAGGCCGTAGAGCCTGCCGCAGACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCGTGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCCCCTTCCGAGGTGGTGGGCGCAGAGGGCTTGGAGTCCAAGGCAGTCTTGTCGCTGCTGCCCTCGGCGGTGGCTTTCTTACAAGGGAGCCCCCGGGACAGGGACCGAGGGCCTCCGCTGCAGTCCTCCGAGCGGTGTCGCCGCTTAAACCTGGGGTGGGCGGCCAGGCTCCTCTGCTCCTT------CTGCTGCTGCTGCTGCTCCTCCTCCTCCTCAGTGTCCGTCTTGGAGCCATTCGAAGCGCTTTTGTGCCGTACCTTTACTTTGCTCTGCATCTCCGTGGCCCGCTTGGGAGGCGGGTTCTTGGGGAGAGTGGCAGCATAATCTTGCGGATAAAAGGGTCCAAAGAGGTCGCCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACTAGGTGCCCCATGACAGAAGACTCTGTCACAACAGGGCCCTGCAGCATGAAGGACGAAGCTGGGAGTGCCTTGCTTTCAGTGCTGCTGGGTGGTGGGGTCAGAGACCTCTGACCTTTCCGACCCCTCACCAATTTGGTCTGTTCTTCCTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCGCACTTATTTACTACATGGATATAAGGGAAAAAAGACTTGTTCTTGGCATCGGTTTTATCCAGTGGCTGGGTGGCATACTTTAGTTTGATCTCAGGTTCTTGGGGTTCCACAATGGGAACTGCTTGTTTGGTTTTCCGCTTCCTTGGCTGTGCCCCAGGCTTCCTTCTCTCCCGCCTTTGCCTCTGCTTTTTTGGCTTTGGCTCTCCATCTGCAGAAGCTTCTGGTATCTGAGGGGGCTGAGGGGGTGGAG------------GCGGTGGCTGCTG------TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTCTTTCCTGATGGGAAGTACCCCTTAGGGGGGAAACCCTCTTGTTTGGGGGAAATCGTCACTGTATCGTTCTCTTTTTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCGACACGCCTGCTGGAGGTACATTCTTTGAGTCAGAAAAGATTAAAGGTGCAGTCCCACCAAGGGAACCATCTGGTCTCCCCTGGTTACTCCCAGGCTTCTGTGAGGTCGTGGATGTCATGGAGCCAGGGGGTTCCTTTCCAGCAGTGACTGTGTCTGGGTGTGTCTCGGTCTTCACCTTGTCGTCCCCACTGCCACGCCACTCCTCTGAAGACCTCGGCAGGGGCTTTTCTATGTTTAACTCCTGGCTTGTCGGACAGACTAGGTCTGATACCAGCTCACCTTTTCTCTTCTCCATTTCGGCATCCTGGACAGCAATGCTCCCACCTTCAGGAGGGCCACTCTTCAAAGACAGTATGTCATCCAGAGTAACCGTGTCTCCCCCAGCCTCCGCACTGTTCGAGGATGCACTCCTCCTGATGTTTGGGGATGTGATCTTCTGAACTATAGCTTCCAGTTTCAACCCTCGGCCTTTCCTGGGGGGCAGTATTTTGGTCTTAGCAGGACTTGTGAGGGTAACAGCAGGGCAGTTTCTACTGTCTGGACTTGGAAGGTCCTTGGAAGATTCCCTCTTAGGGACAGACTTGACATCCTGACTGTGAGAAAGATGTGCGTAGGAATTGAACGCTCTATCAGCGCCTTCTTTCGGTGGGTGAAGGAGGCGCCCTTTATCTTCAGTGTTGCTGTTCTTCACATCTTGTGACTGCCTCTTGCTGGGAATGGGAGAGATAAAGGAACGCACCCGCCTCCGCATGATTAAGGGGTTTTGAGAAGAATGATCCTCTTGGCCTGGAAGCCTGAGCATAACATTACTGGGTTTGGATGACTGTGCCGTGTCAGTGAGCCCATGTCCGTCGGCCTCATGGGGCGGCCCGTACCTCTTCTGATTGGACATTCCCGGAGGACCGCTGCTTTTGGCTGGAGAAGTTTGCCGGGAAAGATCCCAACACGATTCTTGTTGTAACTTCTGGGAGCCATGCTTCAATTCGATGGTTTTGTTAGACAGACCATCACTAGACATGAGGCAGCGCCCCCCTTCCTGACCGCTGGGATCATGGTAAGTCCCCATCGGTGGGCCATACATCATACCATCTTTGTCATTTTTCAGGGGGCTCCGCACTCTGTCAAGAAACTGCTGCTGCCTTGGGCTCTTCCGCGGGCCCTCCTGCCTGTGCTGTGCTGCAGCAATCACTCCCTGAGCAGAACCACTGCTCCAGTCTTTATACTCCTCTTGTTGCTGCTGGTACATCTGTCTCTTATAATGGAGCTGAGAATTCAAACCTGCATTGGGGTCCCCGTAAGCATGAGCCCGAGTATTTGTGTGGTAAGCAGAGGCTAAGCTCTCTGAGTTGGGAGAGAAGGGAGCGTGTAAAGAACTCCGGTTGGCCCTCTCTGAAAAGGTCATGTGTGGGTTCATGTGATGAGGATCTCCCCCTGGGCCTCTGCTCCTCCCAGGAGACATCTTCAGTTTTTCTGAGAAGTCATGATACTGTGAAGGGGAACGCCCCCTCATGCCCTCTCGACCACCGACTCTGCCAGGGACCCGCCGCATTGGTGTGGGTCTGCTGTC---TTGTGGGCCATAGTCTGAGATGGAATCGTGG---GCAGCTCCTGGGCTGGCATTGCCTCGGTAAGACTCATGCTTGATGCTAGCAGGATGGCA--GTGGTCTCCAGATTTCTTGTTGTTGAAACTGGCTTGAGATTTGGATTGTTCAAAGTCTTCCTCTTTTATCTGCCCGCTCTGGGATTTCAGCTTTGTTTCCATGGATACCAACCCACCTGGAAGAATGACCGACTGACTTAAACTTGGATTGAGCCGCTCACTCCTCCCAAGTCTGGTGTCAGTACCTATGTGTCCCAGTGAGTGAGCCCCTGGGTCCCTGACAATCTGTCTCAGTGGAGAAATATCACAGATCACAGATCTCCTTTCAGAAAGGGAACCCCCAGGCTCATGGGCTGATGACTGAGGCTCTATTTCAAATTTTCTGGGAATCGGATAGTCGGCCAGATTGATCTGTTTCATTTCGGGAGCTGTGCTGCTTGACTTCCTTTCCCAGGGGCCCCAGTGTGGGTTTTCTAACAGGGACCCAATACTTTTGTTCAAAAGGCCCCTGCTAGCTAACTCATTGGTTTGACTGACTAAGACATTAGGCCTCGTGGCTCCTTCCAGGCCACCGGCCATGCCCTGATGCTCCTGAGTACTCCTAGAATATCTCCTGTCAGGGTGGTGGTGGTAACCTTGAAGCACTTCCTGCAGGAGGCTAGGGAACTTCTCATTTCTCCCCTTTCGCTCCCCGTGGCCAGTGAAATCCCCCTTATCTTGTCCTGTAGGATACTGAGGAAAGCTACTGACGTTCCTTGGCACAGCTGACCCAAAACTATCTTTGTAACTATAGCGCAGGCTGCCCGGGGATTTGCTAGGCTCACTCCTGCCTATAAAACCAGGGCCCACTGCCGAGTGCCCGCCCTGGCCGTTTCCCTCTCCATTGTGGTTGGAG---TTATTATCTACGGTCTTGTTTCCTTTGCTC---CCTCCCCCCGGGGGCTCTGGCTGCGGGACTGGTGGGTGACTGGTTTCCTTTGTCCCGCCAGTGCTGGGTGGCCTCTGGGTGGATGCAGGATCATCCTCTTGGGAGCCTTTATCTTGCCCACCAGGCTTTTCTACTCGACCTGTCATAGCTTCCCGGGAAACAATCACCCCAACTGTTTTTTCATTGACTTTTGGGTTGCCCTCGGCCGAAAGTGGTGTGTCCTTAGCACCAGGCGAGGCCGCCTCTTCTCTGGCCGCAGGACTGGCATTGAGTCTGGGGGCTTCGTTCTGAGTGCCCTGTGCAGGCGAGGAGCCAGCTTTCTCGGAGGCTCCGCCCTTGTAGGTGGTGTCAGAACTGGTGCTCTGGCCACTCAGCTGCCTCACACGCTCGCCTGGATCTTCAGAGCTGCTGGAGCAGCCCCCGTCCAGTGACTCAGCCATAGGGGACTTCAGTTGTTCTTCAGGCTGAGAGGAGCCTTCGGAGTTTGTGCAGCTGTCTGCTTTCTTA---GAAGATGAGGAGGGCCTCTTGGAGGTCTTCTTCTGAGGCGTCAGGGCATCAGAAAGTAGCATGTGCTGAACAGTATTGGGAAGATTGGCCACTTGAGTGCTCAGGGCACTCAAACTACTCAGCCCAGGATCTGTCAGTCGCTTTTCTGGCACTCCCTCTAGTCCAAACCCTTTGAAGCCCGCAGCATGAGAATTTGGACTGGGCATCATTGAGGGGGTCGGGCTGAGCTGGGGCATTAACTGTAAAATTCTGTTTCTGGAACCCATGGGCACATTGCCTTGCCCACACTGGAGATTCTCTCCACTCTGCATAAGAGGAGATGGGGTGGAGCTACAGCTTGGAGACTGAACCACAGAGGCCGCCGGGGAAGGGTTTGAGATAGGGCTGAAGTTCTGGTGGAACTGCATGGGGGACCTCACAGGAACCTCAGGCTGGCTGTACTGCCCCACCTGGGCCTGCAGGGGCAGCTTGGTG---GCAGCGTTGGTATACTGCATCACAtgctgcgggggg------tgctgctgtggctgct---------------------------------------gtgcctgctgctggggcggctgctgcccctgctgT---GTCCCTTGTGGAATCTTCGCCTGCTCGAAGTTTTTCATAGACTGAGGCTGATAGCTGTAATTTGATTGTGTTCCGTAAGCCTGTGCATTAGAACCCACACTGTGTCCCTCATACTGGGATCCAGCATTCACACTGTAACTGCCATCATAGCTCTGGCCAGACTGGCTGAAGCGCTGCGGTGAAGGGAAGGAGGAGGAG---GAGGAGGCAGCAGAAGACTGGTAGTGCTGGCCGAACTGACCCACTCTCAGCTGGTAACCGGCGGCAGAGGACGGCAGAGTTGAGGGCCGCTGCATCGGCTGCAGATGGGACGACCCAGATGCTGGCTGGCCAGTGGCTTGTGGCAGAGGCTGGTGGGACTGGTAAAGCTGCTGTCTCAACTGCTGTACC---------------------------------------------TGCTGC------TGCTGCTGGCTGGAAGCCTGCTGTTGGTACTGAGCACTCCCTGGAGAGAAAGGCCCCGAGTAATCCTGCTGATAATGAGACACACCACCAAGGGCAGAGTGCTGTGCTTGAAACTGGCCCACATGCCCCTCGCTCCCATACTGATTGCCAAAGCTGCTCCCCTGGGGGGGGCCGTAGCTCTGCACGGGCCCCGAAGGCCTTCGTTGAGGTGGCTGCGGGGTTCCTGTCGTCACAGGGTCTTTGCTGCCTGCCATGTAATAAAAGTCTCCAGCCTCTTTCCTGAAACCCTGGTAGCCCTGATGGCCAGAGGTTTCACTAGCCATTGCTGCTGC---AGCTGCCGTTCCTCGTCGCccaccaccgctgctg---ccgccgctgccaccgctgccaccaccCGCGCCCCCAAAATTCTGGAACATCTGGGCCTGACGCGGGCTGAACTCTTCTATCCGGGATGAGCCGTGTACCTCCTGTGGGTAGCTCTGCTGGTCTCCGTGGTAACTGCTTTGCTCCCGGAAGGACTGCATACTGTTCAGCAGCACGGCAGCAGGCCAACAGCCCTCCTGGAAATGG--AAGAGGA---GACAGAAAAATATCAGACACGCATCTCC---GTACAAAGAAAATCAGGTCTGGGTGA i canFam3.chr10 I 18 C 0 s dasNov3.JH570235 113968 5976 + 1056298 acaa-----aaCTTCCAAATTACCTACTTCATTTTAGGT-------CAAATGGGTCTAGAGGCTT-TAGTTCGGAGGAATAATTCTG-TGATATATAA---------------GAATAAAAGGTAAGGCTAAAACAA------GTGAAGGTGGAAGAATGAA----ACAAAATGA--GAATAACTTCTCTGTAAGAGCAAGCTGGTA--AGGGATTTCTCGTACTCACCATCTCTCTGGCTATTTCCAGCGCTTCCTGCAGGCCATAGAGCCTGCCACAGACCAGGTAGATTCCATTGGCCCAGAGAATACAACCCTCATGGACCCAAAATTCATTGCTGTCAAGAGGTAGTTCAGGGATTTGTAACTCCAGCTCAGGGCCACCTTCTGAAGTGGTGGGCACGGTGGGTTTTGAGTCCAAAGAAGTCTTTTCACTGCTGCCCTCGGTGGTTGCTTTTTTACAAGGGAGCCCCCTGGACAGTGACCGAGGGCCTCCACCACAGTCTTCCGAGCGGTGTCGCCGCTTAAACCTGGGGTGGGCAGCCAGGCTCCTCTGCTCCTT------CTGCTGTTGCTGCTGCTCTTCCTCCTCCTCAGTGTCCGTCTTGGAGCCATTAGAAGCACTTTTGTGCCGTACCTTAACTTTGCTCTGCATTTCCATGGCCCTCTTAGGAGGTGGATTTTTCGGAAGAGTGGCTGCATAATCTTGGGGATAAAAGGGTCCAAAGAGGTCGCCCATGTTCCGGTAACTGGCCCACTTGCCACACAGACAGCAAACAAGGTGCCCCATAACAGAAGACTCTGTCACAACAGGTCCCTGCAGCATAAAGGATGAAGCTGGGAGCGCCTTGCTTTCTGTGCTGCTGGGTGGAGGGGTCAGTGACCTCTGACCCTTCCGACCTCTCACCAATTTGGTCTGTTCTTCTTCTTCAGCATTGATGATTGTACAAACGGCTCCAAGTTCACACTTATTTACTACATGGATATAAGGGAAAAAAGATTTGTTCTTGGCATCAGTTTTATCCAGTGGTTGGGTGGCATACTTTAGTTTGATCTCAGGTTCTTGAGGTTCTACAATGGGAACTGCTTGTTTGGTTTTCCGCTTCCTCGGCTGCCCCCCAGGCTTTCTTCTCTCCCTCCTTTGCCTCTGCTTTTTAGGCTTTGGCTCTCCGTCTGCAGAACCTTCTGGTATCTGAGAAGGCTgtggtggtggtggtggtggtggtggtggtggCTGCTGTTG---TTTCTTTTGCTTATTCACACTACCAATGGGTCTCCCCTTCTTCTTTCCTGATGGGAAATAACCCTTTGGAGGGAAACCCTCTTGTTTGGGTGAAATTGTCACTGTATCATTCTCCTTCTCTTCAGCCTTGGGGTTTGCCTCAGGGGCCAATATGCTCCCTGGAGATACATTCTTTGAGTCAGGAAAGATGAAAGGTGCTGTCCCACCCAGGGAACCATCTGGTCTCCCTTGGTTACTACTAGGCTTCTGTGAGGTTGCGGATGTCATGGTACCAGGGGGTTCCTTTCCAGCAGCAACTGCTTCTGGATGTGCCTCTGTCTTCACTTTGTCGTCTCCACTGCAGCGCCACTCTTCTGAAGACTTTGGAAGAGACTTTTCAATGTTCAGTTCCTGATTTGTTGGACTGACTAGGTCAGATACCATCTCACCTTTTCTCTTCTCTATCTCAGCTTCTTGGACAGCAACACTCCCACCTTCGGGAGGTCCACTCTTCAAAGATAGTATGTCATCGAGAGTAACTGTGTCTCCCCCAGCCTCTGCACTGTTCGAGGATGCACTCCTCCGAATATTTGGAGATGTAATCTTCTGAACTATAGCTTCTAATTTCAATCCCCGACCTTTTCGTGGGGGCAGTATTTTGGTCTTAGCAGGGCTTGTAAGGGTAACAGCAGGGCAGTTTCTATTATCTGGACTTGGAAGGTCCTTGGAGGAATCCCTCTTAGGAAGAGACTTGATATCCTGACTGTGAGAAAGATGGGCATAGGAATTGAATGATTTTTCAGTGCCTTCTTTTGATGGGGGAAAGAGGCGCCCCTTATCTTCAGTGTTACTGTTCTTCACATCTTGTGACTGTCTTTTACTGGGAATGGGAGAGATAAAAGAACGGACACGCCTCCTCATGATTAAGGGGTTTTGAGGAGAATGATCCTCTTGACCCGGCAGCCTCAGCATAACATTACTAGGTTTGGATGACTGTGTGGACTCAGCCAGTCCATGTCCATCAGTTTCATGGGGTGGTCCATATCTTTTTTGATTGGACATTCCTGAAGGACCACTGCTTTTTGCTGGAGAAGTTTGCCGAGAAAGGTCCCAACAAGATTC---TTGTAACTTCTGAGAACCATGCTTCAATTCAATGCCTTTGTTAGAGAGACCATCACTAGACATGAGACAGCGCCCAGCTTCCTGACTACTGGGGTCATGGTAAGTCCCTACTGGTGGGCCATACATCATACCATCTTTATCATTTTTCAGAGGGCTCCGTACTCTGTCAAGAAACTGCTGTTGCCTTGGGCTCTTCCGTGGTCCCTCCTGTCTGTGCTGTGCTGCTGCAATTACTCCCTGAGCAGAACTGCTGCTCCAGTCTTTATATTCTTCTTGTTGCTGTTGGTACATCTGTCTCTTATAATGGAGCTGAGAATTCAAACCCGTGTTAGGGTCCCCATAAGCATGAGCCCGAGTGTTTGTATGATAAACAGAGGCCAGGCTTTCTGAGTTGGGAGAAAAGGGAGTGTGTAAAGAACTCCTGTTGACCCTCTCTGAAAAGGTCATGTGTGGGTTCATGTGATGAGGGTCGCTCCCTGGGCCTCTGCTCCTCCCAGGGGACATCTTTAATTTTTCTGAAAAATCATGATACTGAGAAGGGGACCGACCCCTCATGCCTTCTCGGCCACCAACTCTGCCAGGGACCCGCCTCATGGGTGTGGGTCTGCTGTCCTGTTGTGGGCCATAGTCTGACATGGAATCGTGGGCTGCTGATCCAGGGCTGGCATTGCCTCGGTAAGACTCATGTTTGATGCTAGTGGGATGGCA--GTGATCTCCAGATTTCTTGTTGTTGAAACTAGCTTGAGATTTGGATTGTTCAAAGTCTTCCTCTTTTATCTGCCCACTCTGAGATTTCAGCTTTGTTTCCATGGACACCAGCCCACCTGGAAGAATGACTGACTGACTTAAACTCGGATTGAGACGTTCATTCCTCCCAATTCTGGTGTCAGCACCCATGTGTCCCAGTGAGTGAGCCCCTGGGTCTCTGACAATCTGTCTCAGTGGGGAGATATCACATATCACTGATCTTCTTTCAGAGAGAGAACCCCCTGGTTCATGGGCTGATGACTGAGGCTCTATTTCAAACTTTCTGGGAATTGGATAGTCAGCCAAATTGATCTGTTTCATTTCAGGAGCTGTGCTGCTGGACTTCCTCTCCCAGGGGCCCCAGTGGGGGTTTTCTAATAGGGACCCAATGTTTTTATTCAGAAGACCCCTGCTAGCTAATTCATTGGTTTGACTAACCAAAACATTGGGCCTTGTGGCTCCTTCTAGGCCACTGGCCATCCCCTGATGCTCCTGAGCACTCCTAGAATATCTCCTGTCAGGATGGTGGTGGTAACCCTGGAGCACTTCCTGTAAGAGGCTGGGAAACTTCTCATTTCTACCCTTCCGTTCCCCATGGCCAGTGAAATCCCCCTTTTCTTGTCCTGTAGGATACTGAGGAAAACC---GACATTTCGTGGCATTGCTGGCCCAAAACTATCTTTGTAACTATAGCGAAGGCTTCCAGGAGATTTGCTAGGCTCAGTTCTGCCTGTAAAACCAGGGCCCATTGCAGAGTGCCCACTCTGGCCGTTTCCCTCTCCATTATGGTTTGAG---TTATTATCTCCATTCTTGTTTCCTTTGCTC---CCTCCCCCTGGAGGCTCAGGCTGTGGAAGTGACGTGTGGCTGGTTTCCTTTGTCCCGCCAGTGCTAGGTGGCCTCTGAGTCGCTGCAGGATCATCCTCTTGGGAGCCTTTTTCTTGTCCACCTGTCTTTTCTACACGACCTGCCATAGCTTCCCGGGAGACAATCACCCCAACTGTCTTCTCATTGACTTTTGTGTTGCCCTCAGATGACAATGGTGTATCCTTGGCACCTGGTGAGGCAGCCTCTTCTCTTGCTGCAGGACTGCTACTGAGTCTGGGTGGTTCATTCTGAGCACCTTGTGCTGGTGAAGAGCCAGTTTTTTCTGAGGCTCCACCCTTGTAGGTGGTGTCAGAGCTGGTGCTCTGGCCACTTAACTGCCTCACTCTCTCACCTTGATCCTCAGAACTGCTGGAGCAGCCTCCATCCAGTGACTCTGCCATAGGGGACTTCAGTTGTTCTTCAGGCTGTGAGGAACCTTCGGAGTTTGTGCAGCTGTCTGCTTTCTTA---GAAGTTGAGGAGGGTCTCTTGGAAGTCTTTTTCTGAGGTGTCAGGGCATCAGAAAGTAACATGTGCTGGACAGTATTGGGAAGATTGGCTACTTGCGTACTCAGGGCACTCAAGCTACTCAGCCCAGGGTCTGTCAGTCGCTTTTCTGGCACACTTTCTAGTCCAAACCCTTTGAAGCCTGCAGTATGAGAATTAGGACTGGGCATCATTGATGGGGTTGGACTGAGTTGAGGCATTAACTGTAAAATTCTGTTTCTGGAACCCATGGGCACACTGCCTTGCCCGCACTGGAGATTCTCCCCACTCTGCATGAGAGGTGACGGGGTAGAGCTACAGCTTGGAGACTGAACCACAGATGCAGCTGGAGAAGGGTTAGAAATAGGACTGAAGTTCTGGTGAAACTGCATGGGGGACCTCACAGGAACCTCAGGCTGGGTGTACTGTCCCACCTGGCTTTGGAGAGGCAGCTTGGTGGCAGCAGCATTGGTATACTGCATCACATGCTGAGGGGGA------tgctgctgcccctgct------------------------------------------------gctgcccctgctgctgcccctgctgGGTCGTCCCCTGTGGAATCTTTGCCTGCTCAAAATTCTTCATAGATTGAGGCTGATAGCTATAATTTGATTGTGTTCCATAAGCCTGTGCATTAGAACCCACATTATGGCCTTCAAACTGGGAACTGGCATTCACACTGTAACTGCCTTCATAGCTCTGTCCAGACTGGCTGAAACGCTGTGGTGAAGGGAaggaggacgaggaggaggaggaggCAGAAGACTGGTAGTGTTGGCCAAACTGACCCACTCTCAACTGGTAACCGGAAGCAGAGGATGGCAGAGTAGAGGGCCGCTGCATTGGCTGTAGGTGGGATGAGCCAGACGCTGGCTGACCAGTGGCTTGTGGTAGAGGTTGATGGGACTGGTAAAGCTGTTGTCTTAACTGCTGTACT---------------------------------------tgctgctgctgc------tgctgctgGCTGGAAGCCTGCTGTTGGTACTGAGCACTCCCTGGGGAGAAAGGCCCTGTGTAATCCTGCTGATAATGAGACACACCACCAAGGGCAGAGTGCTGTGCTTGAAATTGGCCCACATGACCCTCACTCCCATACTGATTGCTAAAGCTGCTCCCCTGGGGGGGTCCATAGCTTTGCACAGGCCCAGAAGGCCTTCGCTGAGGGGGCTGCGGGGTTCCTGTTGTCACTGGGTCTTTGTTGCCTGCCATATAGTAAAAATCTCCAGCTTCTTTCCTGAAACCCTGGTAGCCTTGATGGCCAGAGGTCTCATTAgccattgctgcagcagcagctgctgctcctcgccgtccgccaccaccaccactgctgctactgccgccaccactgccacctccactcccgAAGCTCTGGAACATCTGGGCCTGACGAGGGCTGAACTCTTCAATCCGGGATGAGCTGTGTACCTCCTGTGGGTAGCTCTGCTGGTTCCCGTGGTAACTGCTTTGCTCCCTAAAGGACTGCATACTGTTCAGCAGCACAGCAGCAGGCCAACAGCCCTCCTGGAAGCAGGGAAGAAAA---GAAAGAAAAATATTAGACAAACACCTCCCCAGTACAAACTAAATCAAGCCTAGATTA i dasNov3.JH570235 C 0 C 0 a score=13923.000000 s hg38.chr22_GL383582v2_alt 125606 1 + 162811 T s panTro5.chr22 28905555 1 + 37823149 T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180118 1 + 50109623 T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3202945 1 + 4464012 T i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106698741 1 - 115148730 T i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315205 1 + 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87661574 1 - 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158180 1 - 13098629 T i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118061 1 - 4483953 T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24748379 1 + 33263144 T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14029384 1 - 14338769 T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 967655 1 + 1946073 T i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1994273 1 - 2117846 T i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905319 1 - 16357246 T i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1389602 1 - 1807191 T i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69153 1 + 5963231 T i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46136468 1 - 69331447 T i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 119944 1 + 1056298 T i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857350 0 + 104043685 C e otoGar3.GL873526 36328637 12 - 42659167 I e proCoq1.NW_012136747v1 5124090 71 - 6317780 I e micMur3.chr7 5757854 328 + 108171978 I a score=520987.000000 s hg38.chr22_GL383582v2_alt 125607 45 + 162811 GGAGGGAATAAAGATGAATCAGAGGCCCAG-ATGAAGCTGACTGGT s panTro5.chr22 28905556 45 + 37823149 GGAGGGAATAAAGATGAATCAGATGCCCAG-ATGAAGCTGACTGGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180119 45 + 50109623 GGAGGGAATAAAGATGAATCAGATGCCCAG-ATGAAGCTGACTGGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3202946 45 + 4464012 GGAGGGGATAAAGATGAATCAGATGTCCAG-ATGaagctgactggt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106698742 45 - 115148730 GGAGGGGACAAAGATGAAACAGATGCCCAG-ATGAAGCTGACTGGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315206 44 + 92844088 GGAGGGGAT-AAGATGATTCAGATATCCAG-ATGAAGCTGACTGGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87661575 44 - 96509753 GGAGGGGAT-AAGATGATTCAGATATCCAG-ATGAAGCTGACTGGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158181 44 - 13098629 GGAGGGGAT-AAGATGATTCAGATATCCAG-ATGAAGCTGACTGGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118062 44 - 4483953 GGAGGGGAT-AAGATGATTCAGATATCCAG-ATGAAGCTGACTGGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24748380 44 + 33263144 GGAGGGGAT-AAGATGATTCAGATATCCAG-ATAAAGCTGACTGGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14029385 44 - 14338769 GGAGGGGAT-AAGATGATTCAGATATCCAG-ATGAAGCTGACTGGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 967656 44 + 1946073 GGAGGGGAT-AAGATGATTCAGATGTCCAG-ATGAAGCTGACTGGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1994274 44 - 2117846 GGAGGGGAT-AAGATGATTCAGATGCCCAA-GTGAAGCTGACTGGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905320 40 - 16357246 GGAGGGTAT-AAGATGATTCAGATGCCCAA-ATGAAGCTGAC---- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1389603 40 - 1807191 GGAGGGGAT-AAGATGATTCAGATGCCCAA-ATGAAGCTGAC---- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69154 44 + 5963231 GGAGGGGAT-AAGATGATTCAGATACCCAA-ATGAAGCTGACTGGT i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36328649 44 - 42659167 AGAAGGGAT-AAGGTAATTCAGATAACCAG-ATGAAGTTGACTGGT i otoGar3.GL873526 I 12 C 0 s mm10.chr15 82857350 32 + 104043685 -----------AAATAACTCAG-TGACCAG-ATAAAGCTGATT-GC i mm10.chr15 C 0 C 0 s canFam3.chr10 46136469 44 - 69331447 GGAGGGGAT-ACAATAATTCATATGTCCAG-ATGAAGGGGATTGTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 119945 40 + 1056298 GGAGGGGAT-AAA-----TCAAATGCCCAGAATGAAGGTGACTGGT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5124090 71 - 6317780 I e micMur3.chr7 5757854 328 + 108171978 I a score=52951.000000 s hg38.chr22_GL383582v2_alt 125652 22 + 162811 TTGAA--------------------------------tttctattttttt--tttt s panTro5.chr22 28905601 24 + 37823149 TTGAA--------------------------------tttctattttttttgtttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180164 24 + 50109623 TTGAA--------------------------------tttctatttttttgtttgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3202991 21 + 4464012 ttgaa--------------------------------tttctatttttt---tttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106698787 22 - 115148730 TTGAA--------------------------------TTTCTAttttttt--tgtt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315250 13 + 92844088 TTGAA--------------------------------TTAC-----------tttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87661619 13 - 96509753 TTGAA--------------------------------TTAC-----------tttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158225 13 - 13098629 TTGAA--------------------------------TTAC-----------tttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118106 13 - 4483953 TTGAA--------------------------------TTAC-----------tttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24748424 13 + 33263144 TTGAA--------------------------------tttc-----------tttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14029429 13 - 14338769 TTGAA--------------------------------TTAC-----------tttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 967700 17 + 1946073 TTGAA--------------------------------tttctttt-------tttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1994318 14 - 2117846 TTGAA--------------------------------tttct----------tttc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905360 13 - 16357246 -TGAA--------------------------------tttct----------tttc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1389643 13 - 1807191 -TGAA--------------------------------ttttt----------tttc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69198 19 + 5963231 TTGAA---------------------------tttcttttct----------tttc i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36328693 54 - 42659167 TTGAACTTCATCTCCTTTTATTTTTTATCCTATTTCTTTTCttttttttt--tttt i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82857382 21 + 104043685 TTAAA--------------------------------TTCCATCTCCTT---TTTC i mm10.chr15 C 0 C 0 s dasNov3.JH570235 119985 18 + 1056298 TTGAA--------------------------------TTTCCTCTCC-----TTT- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46136513 0 - 69331447 C e proCoq1.NW_012136747v1 5124090 71 - 6317780 I e micMur3.chr7 5757854 328 + 108171978 I a score=29640.000000 s hg38.chr22_GL383582v2_alt 125674 9 + 162811 tggt---------ttttt- s panTro5.chr22 28905625 9 + 37823149 ttgt---------ttttt- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180188 9 + 50109623 ttgt---------ttttt- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203012 9 + 4464012 ttgt---------ttttt- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106698809 18 - 115148730 ttgttttgttctgttttt- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315263 7 + 92844088 tc-----------ttttt- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87661632 7 - 96509753 tc-----------ttttt- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158238 7 - 13098629 tc-----------ttttt- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118119 7 - 4483953 tc-----------ttttt- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24748437 7 + 33263144 tc-----------ttttt- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14029442 7 - 14338769 tc-----------ttttt- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 967717 7 + 1946073 tc-----------ttttt- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1994332 7 - 2117846 tt-----------tttgt- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905373 7 - 16357246 tt-----------ttttt- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1389656 7 - 1807191 tt-----------ttttt- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69217 7 + 5963231 tt-----------ttttt- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36328747 7 - 42659167 tt-----------ttttt- i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 120003 9 + 1056298 ----------TAGTTCTTT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857403 0 + 104043685 C e canFam3.chr10 46136513 0 - 69331447 C e proCoq1.NW_012136747v1 5124090 71 - 6317780 I e micMur3.chr7 5757854 328 + 108171978 I a score=2486735.000000 s hg38.chr22_GL383582v2_alt 125683 283 + 162811 gagacaagagtctcactctgtcacccaggctggagtgcaattgcacgatctcagctcaatgcaactt-ctgcctgcag-----ggttcaagcaattctcttgcctcagcctcccgagtagctggg-actacaggcgcatggccaccaggctcggctaa--ttttttgtatttttagtagagacagggtttcactgtgctgg--ccaggctggt--ctcgaa---ctcctgacct--------cgtgatccgcccacctcggcctcccaaagtgctggaattacaggcatgagc-caccacgcctgacc s panTro5.chr22 28905634 283 + 37823149 gagacaagagtctcactctgtcacccaggctggagtgcaattgcacgatctcagctcactgcaactt-ctgcctgcag-----ggttcaagcaattctcttgcctcagcctcccgagtagctggg-actacaggcgcgtggccaccaggctcggctaa--ttttttgtatttttagtagagacagggtttcactgtgctgg--ccaggctggt--ctcgaa---ctcctgacct--------cgtgatccgcccgcctcggcctcccaaagtgctggaattacaggcatgagc-caccacgcctgacc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180197 283 + 50109623 gagacaagagtctcactctgtcacccaggctggagtgcaattgcacgatctcagctcactgcaactt-ctgcctgcag-----ggttcaagcaattctcttgcctcagcctcccgagtagctggg-actacaggcgcgtggccaccaggctcggctaa--ttttttgtatttttagtagagacagggtttcactgtgctgg--ccaggctggt--ctcgaa---ctcctgacct--------cgtgatccgcccgcctcggcctcccaaagtgctggaattacaggcatgagc-caccacgcctgacG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203021 283 + 4464012 gagacaagagtctcactctgtcacccaggctggagtgcaattgcatgatctcagctcactgcaactt-ctgcctgcag-----ggttcaagcaattctcttgcctcagcctcccgagtagctggg-actacaggcgcatggccaccaggctcggctaa--ttttttgtatttttagtagagacagggtttcactgtgctgg--ccaggctggt--cttgaa---ctcctgacct--------cgtgatccgcccgcctcggcctcccaaagcgctggaattacaggcatgagc-caccacgcctgacc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106698827 285 - 115148730 gagac-agagtctcactctgtaacccaggttggactgcaatggcacaatctcggctcactgcaactt-ctgcctgcag-----ggttcaagcaattctcttgcctcagcctccagagtagctgggaactacaggtgcgtggccaccaggctcggttaattttttttgtatttttagtagagacagggtttcaccgtgctgg--ccaggctggt--ctcgaa---ctcctgacct--------cgtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagc-caccgtgcctgacc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315270 280 + 92844088 gagac---aatctcgttccatcaccaaggctggagtgcaatggcacaatctcggctcactgcaacct-ctacctgcag-----ggttcaagcaattctcctacctcagcctcccgagtagctggg-actacaggcacgtggccacgatgcctgactaa--tgttttgtatttttagtagagacagggtttcaccatgctgg--ccaggctggt--cttgaa---ctcctgatct--------cgtgattcgcccgccttggcctcccaaagtgctgggattagaggcatgagc-caccgagcctgATC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87661639 280 - 96509753 gagac---agtctcgttccgtcaccaaggctggagtgcaatggcacaatctcggctcactgcaacct-ctacctgcag-----ggttcaagcaattctcctacctcagcttcccgagtagctggg-actacaggcacgtggccacgatgcctgactaa--tgttttgtatttttagtagagacagggtttcaccatgctgg--ccaggctggt--cttgaa---ctcctgatct--------cgtgattcgcccgccttggcctcccaaagtgctgggattagaggcatgagc-caccgagcctgATC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158245 280 - 13098629 gagac---agtctcgttccgtcaccaaggctggagtgcaatggcacaatctcggctcactgcaacct-ctacctgcag-----ggttcaagcaattctcctacctcagcctcccgagtagctggg-actacaggcacgtggccacgatgcctgactaa--tgttttgtatttttagtagagacagggtttcaccatgctgg--ccaggctggt--cttgaa---ctcctgatct--------cgtgattcacccgccttggcctcccaaagtgctgggattagaggcatgagc-caccgagcctgATC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118126 280 - 4483953 gagac---agtctcgttccgtcaccaaggctggagtacaatggcacaatctcggctcactgcaacct-ctacctgcag-----ggttcaagcaattctcctacctcagcctcccgagtagctggg-actacaggcacgtggccacgatgcctgactaa--tgttttgtatttttagtagagacagggtttcaccatgctgg--ccaggctggt--cttgaa---ctcctgatct--------cgtgattcgcccgccttggcctcccaaagtgctgggattagaggcgtgagc-caccgagcctgacc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24748444 285 + 33263144 gagac---agtctcgttccgtcaccaaggctggagttcaatggcccaatctcggctcactgcaacct-ctacctgcaggtagaggttcaagcaattctcctacctcagcctcctgagtagctggg-actacaggcacgtggccacgatgcctgactaa--tgttttgtatttttagtagagacagggtttcaccatgctgg--ccaggttggt--cttgaa---ctcctgatct--------cgtgattcacccgccttggcctcccaaagtgctgggattagaggcgtgagc-caccgagcctgATC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14029449 280 - 14338769 gagac---agtctcgttccgtcaccaaggctggagtgcaatggcacaatctcggctcactgcaacct-ctacctgcag-----ggttcaagcaattctcctacctcagcctcccgagtagctggg-actacaggcacgtggccacgatgcctgactaa--tgttttgtatttttagtagagacagggtttcaccatgctgg--ccaggctggt--cttgaa---ctcctgatct--------cgtgattcgcccaccttggcctcccaaagtgctgggattagaggcgtgagc-caccgagcctgacc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 967724 280 + 1946073 gagac---agtctcgttccatcaccaaggctggagtgcaatggcacaatctcagctcactgcaacct-ctacctgcag-----ggttcaagcaattctcctacgtcagcctcccgagtagctggg-actacaggcacatggccacgatgcctgactaa--tgttttgtatttttagtagagacagggtttcaccatgctgg--ccaggctggt--cttgaa---ctcctgatct--------cgtgatttgcccgccttggcctcccaaagtgctgggattagaggcgtgagc-caccgagcctgATC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1994339 236 - 2117846 gagac-agagttttgctctgttgcccaggctggagtgcagtagtgcgatctcggctcactgcaacctcccaccttcca-----ggttgaagcaattctcttgcctcagcctacggaggagctgga-actacaggcctgtg-------------------------------------------------tcaccatgcccg--ccaggctggt--cttgaa---ttcctgacct--------tgtgttctgcccgccttggcctccctaagtgctagatttacaggtgtgagc-cactgcacccggcc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905380 278 - 16357246 gagac-agagttttgctctgttgcccaggctggagcgcagtagtgcaatctcggctcactgcaacct-ccgccttcca-----ggttcaagcaattctcttgcctcagcctccggaggagctgga-actacaggcgtgtg-tcaccatggctggctaa-tttttttgtatttttagtaggaacagggtttcaccatgccag--ccaggctggt--cttgaa---ctcctgacct--------cgtgttctgcccgccttgg----cctaagtgctgaatttacaggtgtgagc-caccacacccagcc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1389663 285 - 1807191 gaaac-ggagttttgctctgtcccccaggctggagtgcagtagtgcaatctcggctcactgcaacct-ccgccttccg-----ggttcaagaaattctcttgcctcagtatccggaggagctgga-actacaggtgtgtg-tcaccatgcccggctaa-tttttttgtatttttagtagggacagggtttccccatgccag--ccaggctggt--caagaactcctcctgacct--------catgttctgcccgtcttggcctccctaagtgctgaatttacaggtgtgagc-caccgcgcctggcc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69224 281 + 5963231 gagac-ggagttttgctctggtgcccaggctggagtgcagcagtgcgatctcggctcactgcaacct-ctg--ttccg-----agttcaagcaattctcttgcctcagcctccggaggagctgga-actacaggcgtgtg-tcaccatgcccggctaa-tttttttgtatttttagtagggacagggtttcaccatgccag--ccaggctggt--ctcgaa---ctcctgacct--------tgtgttctgcccgccttggcctccctaagtgctggatttacaggtgtgagctcactgcacccggcc i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36328754 251 - 42659167 gagac-ggagcctcaagctatccccctgggtagagtgccatggcatcac----actcacagcaacct-ccaactcctg-----ggctcaagcgagtctcctgcctccacctcccaagtagctggg-actacaggcgccca-ccacaacgcctggccat--tttttggt--------tgcagccatcattgttgtttggcgggcccgggctggggattcgaa---cccgccaccttaggtgtatgtggctgg--cgccttagc---------tgcttgagccacaggcg-------------------- i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82857403 0 + 104043685 C e dasNov3.JH570235 120012 0 + 1056298 C e canFam3.chr10 46136513 0 - 69331447 C e proCoq1.NW_012136747v1 5124090 71 - 6317780 I e micMur3.chr7 5757854 328 + 108171978 I a score=118957.000000 s hg38.chr22_GL383582v2_alt 125966 10 + 162811 TTGAATTTCA s panTro5.chr22 28905917 10 + 37823149 CTGAATTTCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180480 10 + 50109623 TTGAATTTCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203304 10 + 4464012 ttgaatttca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699112 10 - 115148730 TTCAATTTCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315550 10 + 92844088 TTGAATTTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87661919 10 - 96509753 TTGAATTTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158525 10 - 13098629 TTGAATTTCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118406 10 - 4483953 TTGAATTTCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24748729 10 + 33263144 TTGAATTTCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14029729 10 - 14338769 TTGAATTTCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968004 10 + 1946073 TTGAATTTCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1994575 10 - 2117846 TTGAATTTCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905658 10 - 16357246 CTGAATTTCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1389948 10 - 1807191 TTGAATTTCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69505 10 + 5963231 TTGAATTTCA i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46136513 10 - 69331447 TTGAATTTCA i canFam3.chr10 C 0 C 0 e mm10.chr15 82857403 0 + 104043685 C e dasNov3.JH570235 120012 0 + 1056298 C e otoGar3.GL873526 36329005 0 - 42659167 C e proCoq1.NW_012136747v1 5124090 71 - 6317780 I e micMur3.chr7 5757854 328 + 108171978 I a score=29223.000000 s hg38.chr22_GL383582v2_alt 125976 2 + 162811 TC s panTro5.chr22 28905927 2 + 37823149 TC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180490 2 + 50109623 TC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203314 2 + 4464012 tc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699122 2 - 115148730 TC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315560 2 + 92844088 TC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87661929 2 - 96509753 TC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158535 2 - 13098629 TC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118416 2 - 4483953 TC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24748739 2 + 33263144 TC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14029739 2 - 14338769 TC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968014 2 + 1946073 TC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1994585 2 - 2117846 TC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905668 2 - 16357246 TC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1389958 2 - 1807191 TC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69515 2 + 5963231 TC i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46136523 2 - 69331447 TC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 120012 2 + 1056298 TC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857403 0 + 104043685 C e otoGar3.GL873526 36329005 0 - 42659167 C e proCoq1.NW_012136747v1 5124090 71 - 6317780 I e micMur3.chr7 5757854 328 + 108171978 I a score=172344.000000 s hg38.chr22_GL383582v2_alt 125978 15 + 162811 TTTTATATTTTATCC s panTro5.chr22 28905929 15 + 37823149 TTTTATATTTTATCG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180492 15 + 50109623 TTTTATATTTTATCG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203316 15 + 4464012 ttttatattttatcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699124 15 - 115148730 TTTTATATTTTATCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315562 15 + 92844088 TTTTATATTTTACCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87661931 15 - 96509753 TTTTATATTTTACCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158537 15 - 13098629 TTTTATATTTTACCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118418 15 - 4483953 TTTTACATTTTACCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24748741 15 + 33263144 TTTTATATTTTACCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14029741 15 - 14338769 TTTTATATTTTACCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968016 15 + 1946073 TTTTATATTTTACCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1994587 15 - 2117846 TTTGATGTTTTATCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905670 15 - 16357246 TTTTATGTTTTATCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1389960 15 - 1807191 TTTTATGTTTTATCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69517 15 + 5963231 TTTTATGTTTTATCC i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5124161 15 - 6317780 TTTTATCTTTTATCC i proCoq1.NW_012136747v1 I 71 C 0 s otoGar3.GL873526 36329005 6 - 42659167 ---------cTATCC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46136525 15 - 69331447 TTTTATTTCTTAACC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 120014 12 + 1056298 CTATACATTTTG--- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857403 0 + 104043685 C e micMur3.chr7 5757854 328 + 108171978 I a score=1045508.000000 s hg38.chr22_GL383582v2_alt 125993 76 + 162811 TATCCACTTCTGAAAATGCACATATGCAGAG--AAATGGCCTAAAGAGTGAGGCAAGAATCTGT-AGTAGAATGAAAAG-- s panTro5.chr22 28905944 76 + 37823149 TATCCACTTCTGAAAATGCACATATGCAGAG--AAATGGCCTAAAGAGTGAGGCAAGAATCTGT-AGTAGAATGAAAAG-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180507 76 + 50109623 TATCCACTTCTGAAAATGCACATATGCAGAG--AAATGGCCTAAAGAGTGAGGCAAGAATCTGT-AGTAGAATGAAAAG-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203331 72 + 4464012 tatccacttctgaaaatgcacatatgcagag--aaatggcctaaagAGTGAGGCAAGAATCTGT-AGTA----GAAAAG-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699139 76 - 115148730 TATCCACTTCTGAAAAAGCACATATGCAGAG--AAATGGCCTAAAGAGTGAGGCAAGAATCTGT-AGTAGAATGAAAAG-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315577 76 + 92844088 TATCCCCTTCTGAAAATGCACATATGCAGAG--AAATGGCCTAAAGAGTGAGACAAGAATCTGT-AGTACAACGAAAAA-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87661946 76 - 96509753 TATCCCCTTCTGAAAATGCACATATGCAGAG--AAATGGCCTAAAGAGTGAGACAAGAATCTGT-AGTACAATGAAAAA-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158552 76 - 13098629 TATCCCCTTCTGAAAATGCACATATGCAGAG--AAATGGCCTAAAGAGTGAGACAAGAATCTGT-AGTACAATGAAAAA-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118433 76 - 4483953 TATCCCCTTCTGAAAATGCACATATGCAGAG--AAATGGCCTAAAGAGTGAGACAAGAATCTGT-AGTACAATGAAAAA-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24748756 76 + 33263144 TATCCACTTCTGAAAATGCACATATGCAGAG--AAATGGCCTAAAGAGTGAGACAAGAATCTGT-AGTACAATGAAAAA-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14029756 76 - 14338769 TATCCCCTTCTGAAAATGCACATATGCAGAG--AAATGGCCTAAAGAGTGAGACAAGAATCTGT-AGTACAATGAAAAA-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968031 76 + 1946073 TATCCACTTCTGAAAATGCACATATGCAGAG--AAATGGCCTAAAGAGTAAGACAAGAATCTGT-AGTACAATGAAAAA-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1994602 76 - 2117846 TATCCACTTCTGAAAACACACATAGGCAGAA--AAAAGGCCTGAAGAGTGAGGCAGGAATCTGC-AGCAGAATGAAAAG-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905685 76 - 16357246 TATCCACTTCTGAAAATGCACATATGCAGAA--AAATGGCCTGAACAGTGAGGCAGGAATCTGT-AGCAGAATGAAAAG-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1389975 76 - 1807191 TATCCACTTCTAAAAATGCACATATGCAGAA--AAATGCCCTGAAGAGTGAGGCAGGAATCTCT-AGCAGAATGAAAAG-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69532 76 + 5963231 TATCCACTTCTGAAAATGCACATATGCAGAA--AAAAGGCCTGAAGAGTGAGGCAGGAATCTAT-AGCAGAATGAAAAG-- i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5124176 78 - 6317780 TGTCCATTTCTGAAAATGCAAATATGCAGAGAAAAATGGACCAAAGAATGAGGCAAGAGTCTGT-GGTAGAATGAAGAG-- i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36329011 68 - 42659167 T----ATTTCTTAAAATGCAAATATGCAG----AAATGGCCC--AGGGTGAAGCAGGAGTCTTT-GGTAGAATGAAGAC-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82857403 73 + 104043685 TATCAATTTCTAATAATGCAAGTAAGCAGAT--AAATGGTCTAAAGAATGA---AGGAATCTGT-AATACAACAAAGAA-- i mm10.chr15 C 0 C 0 s canFam3.chr10 46136540 77 - 69331447 TATCCATTTCTGAAAATGCCAGTAAGCAGAG--AAATGGCCTCAAGAGTACAGCAGACATCTATGAGGAGTATGAAAAG-- i canFam3.chr10 C 0 I 2 s dasNov3.JH570235 120026 64 + 1056298 -----------GAAAATGC---TAGGCAGAC--AAATGGCCTAAAAAGTGGGGTAAGAGTCTAT-GGTAGAAGGGGGAAAA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5757854 328 + 108171978 I a score=-1065.000000 s hg38.chr22_GL383582v2_alt 126069 1 + 162811 C s panTro5.chr22 28906020 1 + 37823149 C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180583 1 + 50109623 C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203403 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699215 1 - 115148730 C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315653 1 + 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662022 1 - 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158628 1 - 13098629 C i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118509 1 - 4483953 C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24748832 1 + 33263144 C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14029832 1 - 14338769 C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968107 1 + 1946073 C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1994678 1 - 2117846 A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905761 1 - 16357246 A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390051 1 - 1807191 A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69608 1 + 5963231 A i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5124254 1 - 6317780 A i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36329079 1 - 42659167 A i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 120090 1 + 1056298 A i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857476 0 + 104043685 C e canFam3.chr10 46136617 2 - 69331447 I e micMur3.chr7 5757854 328 + 108171978 I a score=313467.000000 s hg38.chr22_GL383582v2_alt 126070 28 + 162811 AGCACTCTGAGTGCATA--CAAACCCAATA s panTro5.chr22 28906021 28 + 37823149 AGCACTCTGAGTGCATA--CAAACCCAATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180584 28 + 50109623 AGCACTCTGAGTGCATA--CAAACCCAATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203404 28 + 4464012 AGCACTCTGAGTGCATA--CAAACCCAATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699216 26 - 115148730 AGCA--CTGAGTGCATA--CAAACCCAATA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315654 27 + 92844088 AGCACGCTGAGTGCATA---AAACCCAACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662023 27 - 96509753 AGCACGCTGAGTGCATA---AAACCCAACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158629 27 - 13098629 AGCATGCTGAGTGCATA---AAACCCAACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118510 27 - 4483953 AGCACCCTGAGTGCATA---AAACCCAACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24748833 27 + 33263144 AGCACCCTGAGTGCATA---AAACCCAACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14029833 27 - 14338769 AGCACCCTGAGTGCATA---AAACCCAACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968108 27 + 1946073 AGCACCCTGAGTGCATA---AAACCCAACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1994679 28 - 2117846 AATGCTCTGAGTGCATA--CAAATCCAATA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905762 28 - 16357246 AATGCTCTGAGTGCATA--CAAATCCAATA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390052 28 - 1807191 AATGCTCTGAGTGCACA--CAAATCCAATA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69609 28 + 5963231 AATGCTCTGAGTGCATA--CAAATCCAATA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5124255 28 - 6317780 AACACTCTGGGTATATA--CAAACTCAATA i proCoq1.NW_012136747v1 C 0 I 14 s otoGar3.GL873526 36329080 28 - 42659167 AACACTCTGGGTGTATG--CAAATTCAATA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82857476 30 + 104043685 AATACTAGGAATACACAAACACATTCAATA i mm10.chr15 C 0 C 0 s canFam3.chr10 46136619 28 - 69331447 AACATTCTGGGTAAATT--CAAATTTAATA i canFam3.chr10 I 2 C 0 s dasNov3.JH570235 120091 28 + 1056298 AACACTCCCCATAAATG--CAAATTCATAA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5757854 328 + 108171978 I a score=312096.000000 s hg38.chr22_GL383582v2_alt 126098 38 + 162811 CAG----CAAAAACATGTATGTCTCATATATCTAATAA-TGCC s panTro5.chr22 28906049 38 + 37823149 CAG----CAAAAACATGTATGTCTCATATATCTAATAA-TGCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180612 38 + 50109623 CAG----CAAAAACATGTATGTCTCATATATCTAATAA-TGCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203432 38 + 4464012 CAG----CAAAAACATGTATGTCTCATATATCTAATAA-TGCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699242 38 - 115148730 TAG----CAAAAATATGTACGTCTCATATATCTAATAA-TGCC i nomLeu3.chr7b C 0 I 4 s rheMac8.chr10 84315681 38 + 92844088 TAG----CAAAAACATGTATGTCTCATATATCTAATAA-TGCC i rheMac8.chr10 C 0 I 4 s macFas5.chr10 87662050 38 - 96509753 TAG----CAAAAACATGTATGTCTCATATATCTAATAA-TGCC i macFas5.chr10 C 0 I 4 s macNem1.NW_012012688v1 7158656 38 - 13098629 TAG----CAAAAACATGTATGTCTCATATATCTAATAA-TGCC i macNem1.NW_012012688v1 C 0 I 4 s cerAty1.NW_011999588v1 4118537 38 - 4483953 TAG----CAAAAACATGTATGTCTCATATATCTAATAA-TGCC i cerAty1.NW_011999588v1 C 0 I 4 s chlSab2.chr19 24748860 38 + 33263144 TAG----CAAAAACATGTATGTCTCATATATCTAATAA-TGCC i chlSab2.chr19 C 0 I 4 s manLeu1.NW_012102031v1 14029860 38 - 14338769 TAG----CAAAAACATGTATGTCTCATATATCTAATAA-TGCC i manLeu1.NW_012102031v1 C 0 I 4 s colAng1.NW_012115588v1 968135 38 + 1946073 TAG----CAAAAACATGTATGTCTTATACATCTAATAA-TGCC i colAng1.NW_012115588v1 C 0 I 4 s calJac3.chrUn_GL286373 1994707 39 - 2117846 TAG----CAAAAACATGTATGTCTCATATATCTAGTAATTGCC i calJac3.chrUn_GL286373 C 0 I 4 s saiBol1.JH378157 8905790 39 - 16357246 TAG----CAAAACCACCTATGTCTCATATATCTAGTAATTGCC i saiBol1.JH378157 C 0 I 4 s cebCap1.NW_016107750v1 1390080 39 - 1807191 TAG----CAAAAACATGTATGTCTCATATATCTAGTAGTTGCC i cebCap1.NW_016107750v1 C 0 I 4 s aotNan1.NW_018512383v1 69637 39 + 5963231 TAG----CAAAAACATCTATGTCTCATATATCTAGTAATTGCC i aotNan1.NW_018512383v1 C 0 I 4 s otoGar3.GL873526 36329108 14 - 42659167 TAG----TAAAAAC--------TTCA----------------- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82857506 15 + 104043685 TAGTCTTTAAAAACT---------------------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46136647 17 - 69331447 CAG----AAAAAAAAC-----CCTCA----------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 120119 14 + 1056298 CAG----CAAAAAC--------CTCA----------------- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5124283 14 - 6317780 I e micMur3.chr7 5757854 328 + 108171978 I a score=1422914.000000 s hg38.chr22_GL383582v2_alt 126136 103 + 162811 TTATTAGACAAATGAGCCCC-C-AA-ACTCAACCAGATTA--AAATATGGGGCT-GTGTTATTACTGTCAATGA-----AAAACAGCAATTTTTCAATAAGCCT-----CCCAGTTA-TG- s panTro5.chr22 28906087 103 + 37823149 TTATTAGACAAATGAGCCCC-C-AA-ACTCAACCGGATTA--AAATATGGGGCT-GTGTTATTACTGTCAATGA-----AAAACAGCAATTTTTCAATAAGCGT-----TGCAGTTA-TG- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180650 103 + 50109623 TTATTAGACAAATGAGCCCC-C-AA-ACTCAACCGGATTA--AAATATGGGGCT-GTGTTATTACTGTCAATGA-----AAAACAGCAATTTTTCAATAAGCCT-----TGCAGTTA-TT- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203470 103 + 4464012 TTATTAGACAAATGAGCCCC-C-AA-ACTCAACTGGATTA--AAATATGGGGCT-GTGTTATTACTGTCAATGA-----AAAACAGCAATTTTTCAATAAGCCT-----TCCAGTTA-TG- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699284 104 - 115148730 TTATTAGACAAATGAGCCCC-C-AA-ACGCAACCGGATTA--AAATATGGGGCT-GTGTTATTACTGTCAATGA-----AAAACAGCAATTTTTCAATGACTCT-----TCCAGTTATTG- i nomLeu3.chr7b I 4 C 0 s rheMac8.chr10 84315723 103 + 92844088 TTATTAGACAAATGAGCCCC-C-AA-ACTCAACCAGATTA--AAATATGGGGCT-GTGTTATTACTGTCAATGA-----AAAACAGCAGTTTTTCAACGAGTCT-----TCCAGTTA-TT- i rheMac8.chr10 I 4 I 9 s macFas5.chr10 87662092 103 - 96509753 TTATTAGACAAATGAGCCCC-C-AA-ACTCAACCAGATTA--AAATATGGGGCT-GTGTTATTACTGTCAATGA-----AAAACAGCAGTTTTTCAACGAGTCT-----TCCAGTTA-TT- i macFas5.chr10 I 4 I 5 s macNem1.NW_012012688v1 7158698 103 - 13098629 TTATTAGACAAATGAGCCCC-C-AA-ACTCAACCAGATTA--AAATATGGGGCT-GTGTTATTACTGTCAATGA-----AAAACAGCAGTTTTTCAACGAGTCT-----TCCAGTTA-TT- i macNem1.NW_012012688v1 I 4 I 4 s cerAty1.NW_011999588v1 4118579 104 - 4483953 TTATTAGACAAATGAGCCCC-CAAA-ACTCAACCAGATTA--AAATATGGGGCT-GTGTTATTACTGTCAATGA-----AAAACAGCAGTTTTTCAACGAGTCT-----TTCAGTTA-TT- i cerAty1.NW_011999588v1 I 4 I 5 s chlSab2.chr19 24748902 103 + 33263144 TTATTAGACAAATGAGCCCC-C-AA-ACTCAACCAGATTA--AAATATGGGGCT-GTGTTATTACTGTCAATGA-----AAAACAGCAGTTTTTCAACCAGTCT-----TCCAGTTA-TG- i chlSab2.chr19 I 4 I 5 s manLeu1.NW_012102031v1 14029902 103 - 14338769 TTATTAGACAAATGAGCCCC-C-AC-ACTCAACCAGATTA--AAATATGGGGCT-GTGTTATTACTGTCAATGA-----AAAACAGCAGTTTTTCAACGAGTCT-----TCCAGTTA-TT- i manLeu1.NW_012102031v1 I 4 I 5 s colAng1.NW_012115588v1 968177 103 + 1946073 TTATTAGACAAATGAGCCCC-C-TA-ACTCAACCAGATTA--AAATATGGGGCT-GTGTTATTACTGTCCATGA-----AAAACAGCAGTTTTTCAATGAGTCT-----TCCAGTTA-Cg- i colAng1.NW_012115588v1 I 4 I 18 s calJac3.chrUn_GL286373 1994750 103 - 2117846 TTATTAGACAAATGAGCCCC-T-AA-ACTCAACTGGATTA--AAATATAGGGTT-GTGTTATTACTGTCAATGA-----AAAATAGCAATTTGTCAATGAGTCT-----TTCAGTTA-TG- i calJac3.chrUn_GL286373 I 4 C 0 s saiBol1.JH378157 8905833 103 - 16357246 TTATTAGACAAATGAGCCCC-C-AA-ATTCAACTGGATTA--AAATATAGGGTT-GTGTTATTACTGTCAATGA-----AAAACAGCAATTTTTCAATGAGTCT-----TTCAGTTA-CG- i saiBol1.JH378157 I 4 C 0 s cebCap1.NW_016107750v1 1390123 103 - 1807191 TTATTAGACAAATGAGCCCC-C-AA-ACTCAACTGAATTA--AAATATAGGGTT-GCATTATTACTGTCAATGA-----AAAACAGCAATTTTTCAATAAGTCT-----TTCAGTTA-TG- i cebCap1.NW_016107750v1 I 4 C 0 s aotNan1.NW_018512383v1 69680 108 + 5963231 TTATTAAACAAATGAGCCCC-C-AA-ACTCAACTGGATTA--AAATACAGGGTT-GTGTTATCACTGTCAATGA-----AAAACAGCAATTTTTCAATGAGTCTTTCAGTTCAGTTA-TG- i aotNan1.NW_018512383v1 I 4 C 0 s proCoq1.NW_012136747v1 5124297 103 - 6317780 TTATTAGACAAATGAGCCCT-CAAA-ATTCAACTAGGTTA--AAATATGGGGCT-GTGTCATTACTGTCAATGA-----AAGACAGCAATTTTT-AATGAGTCT-----TCCAGTTA-TG- i proCoq1.NW_012136747v1 I 14 I 23 s otoGar3.GL873526 36329122 103 - 42659167 TTATTAGACAAATGAGCTCT-CAAA-ACTAAACTGGGTTA--CAGTATGAGGCCAGTGTCATTACTGTAAATGA-----AAAATAGCAATTTTT-AATAAGTCT-----TCCAGTTA-T-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82857521 92 + 104043685 TCATTAGATAAATGAGTCTTAC-AA-ATTCAACTGGAGTA---AATATTGGA---ATGTTATTACAAACAAAGA------------CATTTTTTAAATAAATCT-----TT-AGTTA-C-- i mm10.chr15 C 0 C 0 s canFam3.chr10 46136664 103 - 69331447 TTATGAAATAAGTGAACCCC-C-AACATTCAACTGGGTTA--AAATAT-------GTGCTATTAGTATTAATAAAAAAAAAAAAAGCAATTTTCAAGTAAGTCT-----TCCAGCTA-TG- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 120133 96 + 1056298 -TATTAGATAAATGACCCCC-T-AA-ATTTAACTGGATTAAAAAATACAAGGCT-GTGT---------CAATGA-----AAAACAGCAATTTTCAAAACAGTCT-----TCCAGTTA-CTA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5757854 328 + 108171978 I a score=123721.000000 s hg38.chr22_GL383582v2_alt 126239 29 + 162811 CG--GGGGAGGGGGTGTGGGGT--AAGAAAAAC s panTro5.chr22 28906190 29 + 37823149 GG--GGGGAGGGGGTGTGGGGT--AAGAAAAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180753 29 + 50109623 GG--GGGGAGGGGGTGTGGGGT--AAGAAAAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203573 29 + 4464012 GG--GGGGAGAGGGTGTGGGGT--AAGAAAAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699388 29 - 115148730 GG--GGGGAGGGGGTGTGGGGT--AAGAAAAAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315835 30 + 92844088 GG--GGGGAGTGGGTACAGGGT-AAAAAAAAAA i rheMac8.chr10 I 9 C 0 s macFas5.chr10 87662200 30 - 96509753 GG--GGAGAGTGGGTACAGGGT-AAAAAAAAAA i macFas5.chr10 I 5 C 0 s macNem1.NW_012012688v1 7158805 30 - 13098629 GG--GGAGAGTGGGTACAGGGT-AAAAAAAAAA i macNem1.NW_012012688v1 I 4 C 0 s cerAty1.NW_011999588v1 4118688 31 - 4483953 GG--GGGGAGTGGGTACAGGGTAAAAAAAAAAA i cerAty1.NW_011999588v1 I 5 C 0 s chlSab2.chr19 24749010 31 + 33263144 GGA-GGGGAGTGGGTACAGGGT-TAAAAAAAAC i chlSab2.chr19 I 5 C 0 s manLeu1.NW_012102031v1 14030010 30 - 14338769 GG--GGGGAGTGGGTACAGGGT-AAAAAAAAAA i manLeu1.NW_012102031v1 I 5 C 0 s colAng1.NW_012115588v1 968298 29 + 1946073 gg--gtggagtgAGTACGGGGT--AAGAAAAAC i colAng1.NW_012115588v1 I 18 C 0 s calJac3.chrUn_GL286373 1994853 20 - 2117846 GC--GGGA---------TGGGT--AAGAAAAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905936 20 - 16357246 GC--AGGA---------TGAGT--AAGAAAAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390226 20 - 1807191 GT--GGGA---------TGGGT--AAGAAAAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69788 20 + 5963231 GC--GGGA---------TGGGT--AAGAAAAAA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36329225 18 - 42659167 ------------GGTACAG-GT--AGGAAAAAC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82857613 17 + 104043685 --------------TGTGGGGT--GACAAAAGC i mm10.chr15 C 0 I 76 s canFam3.chr10 46136767 20 - 69331447 --CTGGGG---------AGGGT--GAGAAAAAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 120229 23 + 1056298 --------TGGGGGAGGGGAGT--GAGAAAAAC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5124400 23 - 6317780 I e micMur3.chr7 5757854 328 + 108171978 I a score=15300.000000 s hg38.chr22_GL383582v2_alt 126268 1 + 162811 C s panTro5.chr22 28906219 1 + 37823149 C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180782 1 + 50109623 C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203602 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699417 1 - 115148730 C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315865 1 + 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662230 1 - 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158835 1 - 13098629 C i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118719 1 - 4483953 C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749041 1 + 33263144 C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030040 1 - 14338769 C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968327 1 + 1946073 C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1994873 1 - 2117846 C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905956 1 - 16357246 C i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390246 1 - 1807191 C i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69808 1 + 5963231 C i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36329243 1 - 42659167 C i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46136787 1 - 69331447 C i canFam3.chr10 C 0 C 0 e mm10.chr15 82857630 76 + 104043685 I e dasNov3.JH570235 120252 0 + 1056298 C e proCoq1.NW_012136747v1 5124400 23 - 6317780 I e micMur3.chr7 5757854 328 + 108171978 I a score=1382191.000000 s hg38.chr22_GL383582v2_alt 126269 179 + 162811 AAATCCtttttttttttttttttttt--------ttt---tttttttttttttgagacaaggtctcactc--ttgcccaggctggagtgtgcaggg-gcacagtc----gtagttcactgcagcatcaaacacctggcttcaaatgatcctcctgcctcggcctctcaaag-ttttgggactacaggcataagccact-- s panTro5.chr22 28906220 170 + 37823149 AAATCC---------ttttttttttt--------ttt---tttttttttttttgagacaaggtctcactc--ttgcccaggctggagtgtgcaggg-gcacagtc----gtagttcactgcagcatcaaacacctggcctcaaatgatcctcctgcctcggcctctcaaag-ttttgggactacaggcataagccact-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180783 158 + 50109623 AAATCC-----------------------------tt---tttttttttttttgagacaatgtctcactc--ttgcccaggctggagtgtgcaggg-gcacagtc----gtagttcactgcagcatcaaacacctggcctcaaatgatcctcctgcctcggcctctcaaag-ttttgggactacaggcataagccact-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203603 167 + 4464012 AAATCC------------CCCCCCtt--------ttt---tttttttttttttgagacaaggtctcactc--ttgcccaggctggagtgtgcaggg-gcaccgtc----gtagttcactgcagcatcaaacacctggcctcaaatgatcctcctgccttggcctctcaaag-ttttgggattacaggcataagccact-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699418 165 - 115148730 AAtttt-----------ttttttttt--------ttt---tttttgtttttttgagacaaggtctcactctgttgcccaggctgg-----gcaggg-gcacagtc----atagttcactgcagcatcaaacacctggcctcaaatgatcatcctgtctcgacctctcaaag-ttttgggattacaggcataagccacT-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84315866 163 + 92844088 AAAtt------------------ttt--------ttt---tatttttattttttagacaaggtctcactctgttgctcaggctggagtgtgcaggg-gcacagtc----atagttcactgcagcatcaaacacctggcctcaaacgatcctcctgcctcggcctcccaaag-ttttgggattacaggcataagccact-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662231 163 - 96509753 AAAtt------------------ttt--------ttt---tatttttattttttagacaaggtctcactctgttgctcaggctggagtgtgcaggg-gaacagtc----atagttcaatgcagcatcaaacacctggcctcaaacgatcctcctgcctcggcctcccaaag-ttttgggattacaggcataagccact-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158836 163 - 13098629 AAAtt------------------ttt--------ttt---tatttttattttttagacaaggtctcactctgttgctcaggctggagtgtgcaggg-gcacagtc----atagttcactgcagcatcaaacacctggcctcaaacgatcctcctgcctcggcctcccaaag-ttttgggattacaggcataagccact-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118720 165 - 4483953 AAAttt----------------cttt--------ttt---tatttttattttttagacaaggtctcactctgttgctcaggctggagtgtgcaggg-gcacagtc----atagtttactgcagcatcaaacacctggcctcaaacgatcctcctgcctcggcctcccaaag-ttttgggattacaggcataacccact-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749042 165 + 33263144 AAAttt----------------cttt--------ttt---tatttttatattttagacaaggtctcactctgttgctcaggctggagtgtgcaggg-gcacagtc----atagttcactgcagcatcaaacacctggcctcaaatgatcctcctgcctcagcctcccaaag-ttttgggattacaggcataagccacT-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030041 167 - 14338769 AAAttt----------------cttt--------ttt---tatttttattttttagacaaggtctcactttgttgctcaggctggagtgtgcaggg-gcacagtc----atagttcactgcagcatcaaacacctggcctcaaacgatcctcctgcctcggcctcccaaag-ttttgggattacaggcataagccactac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968328 166 + 1946073 AAAttt----------------cttt--------ttt---tatttttattttttagacaaggtctcactctgttgctcaggctggagtgtgcaggg-gcacagtc----atagttcactgcagcatcaaacacctggcctcaaacgttcctcctgcctcggcctcccaaagtttttgggattacaggcataagccact-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1994874 155 - 2117846 AAA-------------------------------------ttcttatttttttgagacaaagtctcactctgttgcccagactggggtatgcaagg-gcacagtc----atagctcagtgcagcctcaaacacctggcctctagcgagcctcctgcctcggcctcccaaag-ttttgggattgtagacataagccacT-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8905957 180 - 16357246 ACattt----------------ttttttattttattttattttttttttttttgagacaagatctcactctgttgcccaggctggagtatgcaagg-gcacagtcatagatagctcagtgcagtctcaaacacctggcctctagcgagcctcctgcctcgacctcccaaag-ttttgggattgcagacataagccaTT-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390247 162 - 1807191 AAAttc----------------tttt--------tttaaatttttttatttttgagacaaggtctcactctgttgcccaggctggagtatgcaagg-gcacagcc----atagctcagtg------caaacacctggcctctagtgagcctcctgcctcggcctcccaaag-ttttgggactgcagacataagccact-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69809 162 + 5963231 AAATTC----------------Attt--------tttta-attttatttttttgagacaaggtctcatgctgctgcccaggctggagtgtgcaaggtgc----------atagctcagtgcagtctcaaacacctggcctctagcaagcctcctgcctcggcctcccaaag-ttttgggattgcagacataagccact-- i aotNan1.NW_018512383v1 C 0 C 0 e mm10.chr15 82857630 76 + 104043685 I e dasNov3.JH570235 120252 0 + 1056298 C e canFam3.chr10 46136788 0 - 69331447 C e otoGar3.GL873526 36329244 0 - 42659167 C e proCoq1.NW_012136747v1 5124400 23 - 6317780 I e micMur3.chr7 5757854 328 + 108171978 I a score=730537.000000 s hg38.chr22_GL383582v2_alt 126448 45 + 162811 acTTTCATTTCTCTGCTTTCATGTATT-AGGG--TGATCACTGAACTG s panTro5.chr22 28906390 45 + 37823149 acTTTCATTTCTCTGCTTTCATGTATT-AGGG--TGATCACTGAACTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180941 45 + 50109623 acTTTCATTTCTCTGCTTTCATGTATT-AGGG--TGATCACTGAACTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203770 45 + 4464012 acTTTCATTCCTCTGCTTTCATGTATT-AGGG--TGATCACTGAACTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699583 45 - 115148730 ACTTTCATTTCTCTGCTTTCATGTATT-AGGT--TGATCACTGAACTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316029 45 + 92844088 acTTTTATTTCTCTGCTTTCATGTATT-AGGG--TGATCTCTGAACTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662394 45 - 96509753 acTTTTATTTCTCTGCTTTCATGTATT-AGGG--TGATCACTGAACTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7158999 45 - 13098629 acTTTTATTTCTCTGCTTTCATGTATT-AGGG--TGATCACTGAACTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118885 45 - 4483953 acTTTTATTTCTCTGCTTTCATGTATT-AGGG--TGATCACTGAACTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749207 45 + 33263144 GCTTTTATTTCTCTGCTTTCATGTATT-AGGG--TGATCACTGAACTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030208 45 - 14338769 acTTTTATTTCTCTGCTTTCATGTATT-AGGG--TGATCACTGAACGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968494 45 + 1946073 acTTTTATTTCTCTGCTTTCATGTATT-AGGG--TGATCACTGAACTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995029 45 - 2117846 ACTTTCATTTCTCTGCTTTCATGTATT-AGAG--TAATCACTGAATTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906137 45 - 16357246 ACTTTCATTTCTCTGCTTTCATGTATT-AGAG--TGATCACTGAACTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390409 45 - 1807191 acTTTCATTTCTCTGCTTTCATGTGTT-AGAG--TGATCACTGAACTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 69971 46 + 5963231 acTTTCATTTCTCTGCTTTCATGTATTAAGAG--TGATCACTGAACTG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5758182 45 + 108171978 ACTTTCATTTCTTTGCTTTGATGTATT-AGAC--TGATCACTGAGCTG i micMur3.chr7 I 328 I 50 s proCoq1.NW_012136747v1 5124423 45 - 6317780 ACTTTCATTTCTTTGCTTTCATGTATT-AGAC--TGATCACTGAGCTG i proCoq1.NW_012136747v1 I 23 C 0 s otoGar3.GL873526 36329244 45 - 42659167 ACTTTCATTTCTTCCCTTTCATGTACT-AGAC--TGACCACTGAGCTG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46136788 47 - 69331447 ACTGTCATCTACTTGCTTCCCTGTATT-ATAGCCTGATCACTGGACTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 120252 45 + 1056298 ACTTTCGTTTATTTGCATTTGTGTATT-AGAA--TGATCACTGAATTG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857630 76 + 104043685 I a score=62601.000000 s hg38.chr22_GL383582v2_alt 126493 5 + 162811 CGGGT s panTro5.chr22 28906435 5 + 37823149 CGGGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180986 5 + 50109623 CGGGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203815 5 + 4464012 AGGGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699628 5 - 115148730 TGGGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316074 5 + 92844088 CGGGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662439 5 - 96509753 CGGGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159044 5 - 13098629 CGGGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118930 5 - 4483953 CGGGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749252 5 + 33263144 CGGGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030253 5 - 14338769 TGGGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968539 5 + 1946073 CGGGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995074 5 - 2117846 CGGGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906182 5 - 16357246 CGGGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390454 5 - 1807191 CCGGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70017 5 + 5963231 CGGGT i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5124468 5 - 6317780 AGGGT i proCoq1.NW_012136747v1 C 0 I 286 s otoGar3.GL873526 36329289 5 - 42659167 AGAGT i otoGar3.GL873526 C 0 I 18 s canFam3.chr10 46136835 4 - 69331447 -AGGT i canFam3.chr10 C 0 I 11 s dasNov3.JH570235 120297 5 + 1056298 GGAGT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857630 76 + 104043685 I e micMur3.chr7 5758227 50 + 108171978 I a score=255670.000000 s hg38.chr22_GL383582v2_alt 126498 25 + 162811 ----TTTAAC---ACTG----------------GCT-------GCTGATCGCCAC s panTro5.chr22 28906440 25 + 37823149 ----TTTAAC---ACTG----------------GCT-------GCTGATCACCAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41180991 25 + 50109623 ----TTTAAC---ACTG----------------GCT-------GCTGATCACCAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203820 25 + 4464012 ----TTTAAC---ACTG----------------GCT-------GCTGATCACCAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699633 25 - 115148730 ----TGTAAC---ACTG----------------GCT-------GCTGATTGCCAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316079 25 + 92844088 ----TTTAAC---ACTG----------------GCT-------GCTGATCGCCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662444 25 - 96509753 ----TTTAAC---ACTG----------------GCT-------GCTGATCGCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159049 25 - 13098629 ----TTTAAC---ACTG----------------GCT-------GCTGATCGCCAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118935 25 - 4483953 ----TTTAAC---ACTG----------------GCT-------GCTGATTGCCAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749257 25 + 33263144 ----TTTAAC---ACTG----------------GCT-------GCTGATCGCCAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030258 25 - 14338769 ----TTTAAC---ACTG----------------GCT-------GCTGATCGCCAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968544 25 + 1946073 ----TTTAAC---ACTG----------------GCT-------GCTGATCGCCAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995079 25 - 2117846 ----TTTAAC---ACTG----------------GCT-------GCTGATCGCCAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906187 25 - 16357246 ----TGTAAC---ACTG----------------GCT-------GCTGATCGCCAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390459 22 - 1807191 ----TTTAAC---TCTG--------------------------GCTGATCGCCAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70022 25 + 5963231 ----TTTAAC---ACTG----------------GCT-------GCTGATCGTCAC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36329312 28 - 42659167 ----TGTCACTCTACTG----------------GCT-------GCCCATTCCCAC i otoGar3.GL873526 I 18 C 0 s canFam3.chr10 46136850 32 - 69331447 ----AATAAC---GCAG----------------TCCCTCCAAGGCTGTCCTGCCC i canFam3.chr10 I 11 C 0 s dasNov3.JH570235 120302 45 + 1056298 CCCAAATGAT---GCTGAGGCAGTCAACCTACCACT-------GTTGCTCAACAC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857630 76 + 104043685 I e proCoq1.NW_012136747v1 5124473 286 - 6317780 I e micMur3.chr7 5758227 50 + 108171978 I a score=65544.000000 s hg38.chr22_GL383582v2_alt 126523 6 + 162811 --------TCCCCA---------- s panTro5.chr22 28906465 6 + 37823149 --------TCCCCA---------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181016 6 + 50109623 --------TCCCCA---------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203845 6 + 4464012 --------TCCCCA---------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699658 6 - 115148730 --------TCCCCA---------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316104 6 + 92844088 --------TCCCCA---------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662469 6 - 96509753 --------TCCCCA---------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159074 6 - 13098629 --------TCCCCA---------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118960 6 - 4483953 --------TCCCCA---------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749282 6 + 33263144 --------TCCCCA---------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030283 6 - 14338769 --------TCCCCA---------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968569 6 + 1946073 --------TCCCCA---------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995104 6 - 2117846 --------TCTCTA---------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906212 6 - 16357246 --------TCTCCA---------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390481 6 - 1807191 --------TCTCCA---------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70047 6 + 5963231 --------TCTCCA---------- i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5758277 6 + 108171978 --------TCCCCA---------- i micMur3.chr7 I 50 C 0 s otoGar3.GL873526 36329340 5 - 42659167 ---------CCCTG---------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46136882 6 - 69331447 --------TCCCCA---------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 120347 24 + 1056298 TGAAACACCCCCCACCCTGCCCCA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857630 76 + 104043685 I e proCoq1.NW_012136747v1 5124473 286 - 6317780 I a score=1621117.000000 s hg38.chr22_GL383582v2_alt 126529 124 + 162811 ACACTGAGAAACAGACCTGGCCAGAGAACTGCAGCCAATTC-CTTATGTCCAAGTGCAAATTTTTGCAGCTTTACTATAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAGCCC s panTro5.chr22 28906471 124 + 37823149 ACACTGAGAAACAGACCTGGCCAGAGAACTGCAGCCAATTC-CTTATGTCCAAGTGCAAATTTTTGCAGCTTTACTATAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAGCCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181022 124 + 50109623 ACACTGAGAAACAGACCTGGCCAGAGAACTGCAGCCAATTC-CTTATGTCCAAGTGCAAATTTTTGCAGCTTTACTATAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAGCCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203851 124 + 4464012 ACACTGAGAAACAGACCTGGCCAGAGAACTGCAGCCAATTC-CTTATGTCCAAGTGCAAATTTTTGCAGCTTTACTATAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAGCCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699664 124 - 115148730 ACACTGAGAAACAGACCTGGCCAGAGAACTGCAGCTAATTC-CTTATGTCCAAGTGCACATTTTTGCAGCTTTACTATAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAGCCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316110 124 + 92844088 ACACTGAGAAACAGAACTGGCCAGATAAATGCAGCCAATTC-CTTCTGTCCAAGTGCACATTTTTGAAGGTTTACTGTAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662475 124 - 96509753 ACACTGAGAAACAGAACTGGCCAGATAAATGCAGCCAATTC-CTTCTGTCCAAGTGCACATTTTTGAAGGTTTACTGTAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159080 124 - 13098629 ACACTGAGAAACAGAACTGGCCAGATAAATGCAGCCAATTC-CTTCTGTCCAAGTGCACATTTTTGAAGGTTTACTGTAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAGCCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4118966 124 - 4483953 ACACTGAGAAACAGAACTGGCCAGATAAATGCAGCCAATTC-CTTCTGTCCAAGTGCACATTTTTGCAGGTTTACTGTAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAGCCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749288 124 + 33263144 ACACTGAGAAACAGAACTGGCCAGAGAAATGCAACCAATTC-CTTCTGTCCAAGTGCACATTTTTGCAGGTTTACTGTAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAGCCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030289 124 - 14338769 ACACTGAGAAACAGAACTGGCCAGATAAATGCAGCCAATTC-CTTCTGTCCAAGTGCACATTTTTGCAGGTTTACTGTAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAGCCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968575 124 + 1946073 ACACTGAGAAACAGAACTGGCCAGAGAAATGCAGCGAATTC-CTTCTATCCAAGTGCACAATTTTGCAGGTTTACTGTAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAGCCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995110 121 - 2117846 ACAT---GAAACAGAATTGGCCAGAGAACTTCAGCCGATGC-CTTATGTCCAAATGCAGATTACTGCAGGTTTACTGTAATTGCC-AACTACCTGTGATGACTGCTGACTCCAGGACACTCAGTCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906218 121 - 16357246 ACAC---GAAACAGAATAGGCCAGAGAACTTCAGCTGATTC-CTTATGTACAAATGCACATTACTGCAGGTTTACTAAAACTGCC-AACTACCTGTGATGACTGCTGACTCCAGGACACTCAGCCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390487 121 - 1807191 ACAC---AAAACAGAATGGGCCAGAGAACTTCAGCTGATTC-CTTACATCCAAATGCACATTACTGCAGGTTTACTATAACTGCC-AACTACCTATGATGACTGCTGACTCCAGGACACTCAGTCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70053 121 + 5963231 ACAC---AAAACAGAATTGGCCAGAGAACTTCAGCCGATTC-CTTATGTCCACATGCACATTACTGCAGGTTTACTATAATTGCC-AACTACCTGTGATGACTGCTGACTACAGGACACTCAGCCC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5758283 122 + 108171978 ACACTAAGAAAC--AGCTGGCCTGAGAACAGAAGCCAGTTC-CTTATGCCCACATGCATATTACTGCAGGTTTACTATACTCATC-AATGACCTGTAATGACTGGTGACCCCAGGACACTCAACCC i micMur3.chr7 C 0 I 33 s otoGar3.GL873526 36329345 107 - 42659167 ACATTGAGAAATAGAGTTGGCCTGAGAATGGAAGCCAGTTC-CTTATGTCCAAACATACATTATTATAGACTCA------------------ATGTAATGACTAGTGACCCCAGGACACTTAACCC i otoGar3.GL873526 C 0 I 4 s mm10.chr15 82857706 90 + 104043685 ACTCCAAGACAAAGACCCATCCTGAGAACCAAAGCTAGTTC-CTC-------------------------------AAAATCGCC----TGCTTATGGTGACTAGTGACTCTGGGACACTCAACTT i mm10.chr15 I 76 I 7 s canFam3.chr10 46136888 126 - 69331447 ACTTTGAGAAACAGAACTTGCCAGAGAACAGAAATCAAGTCTCTTATGTCCAAATGTACGCTACTCCAAGTTGCCTGTAATTACCGAACTACCTGTGATGACTGGCGACCCCAGGACACTCAAATC i canFam3.chr10 C 0 I 8 s dasNov3.JH570235 120371 124 + 1056298 ACTTTGAAAAACGGGATTGGTCTGAGAACAGAAGTCAGTCC-CTTACGTCCAAATGCTCATTATTGCAAGTTTGCTGTAATTACC-CACTGCGTATGATGACTGGCAATCCCAGAACGCTCATGCC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5124473 286 - 6317780 I a score=85091.000000 s hg38.chr22_GL383582v2_alt 126653 8 + 162811 -----ATATGG--GT-- s panTro5.chr22 28906595 8 + 37823149 -----ATATGG--GT-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181146 8 + 50109623 -----ATATGG--GT-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203975 8 + 4464012 -----ATATGG--GT-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699788 8 - 115148730 -----AAATGG--GT-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316234 8 + 92844088 -----ATATGG--GT-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662599 8 - 96509753 -----ATATGG--GT-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159204 8 - 13098629 -----ATATGG--GT-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119090 8 - 4483953 -----ATATGG--GT-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749412 8 + 33263144 -----ATATGG--GT-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030413 8 - 14338769 -----ATATGG--GT-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968699 8 + 1946073 -----ATATGG--GT-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995231 8 - 2117846 -----GTATGG--GT-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906339 8 - 16357246 -----GTATGG--GT-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390608 8 - 1807191 -----GTATGG--GT-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70174 8 + 5963231 -----GTATGG--GT-- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36329456 8 - 42659167 -----CAATGG--GG-- i otoGar3.GL873526 I 4 I 17 s mm10.chr15 82857803 8 + 104043685 -----CTATGG--AT-- i mm10.chr15 I 7 C 0 s canFam3.chr10 46137022 8 - 69331447 -----GTATGG--AT-- i canFam3.chr10 I 8 I 18 s dasNov3.JH570235 120495 17 + 1056298 CTATCATACTGCAGTCA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5124473 286 - 6317780 I e micMur3.chr7 5758405 33 + 108171978 I a score=365955.000000 s hg38.chr22_GL383582v2_alt 126661 27 + 162811 TCCACACA-------AAC-----------TTTGGAGTCA------ACCTCT s panTro5.chr22 28906603 27 + 37823149 TCCACACA-------AAC-----------TTTGGAGTCA------ACCTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181154 27 + 50109623 TCCACACA-------AAC-----------TTTGGAGTCA------ACCTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3203983 27 + 4464012 TCCACACA-------AAC-----------TCTGGAGTCA------ACCTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699796 27 - 115148730 TCCACACA-------AAC-----------TTTGGAGTCA------ACCTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316242 27 + 92844088 TCCACACA-------AAC-----------TTTGAAGTCA------TCCTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662607 27 - 96509753 TCCACACA-------AAC-----------TTTGAAGTCA------TCCTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159212 27 - 13098629 TCCACACA-------AAC-----------TTTGAAGTCA------TCCTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119098 27 - 4483953 TCCACACA-------AAC-----------TTTGAAGTCA------TCCTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749420 27 + 33263144 TCCACACA-------AAC-----------TTTGAAGTCA------TCCTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030421 27 - 14338769 TCCACACA-------AAC-----------TTTGAAGTCA------TCCTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968707 27 + 1946073 TCCACACA-------AAC-----------TTTGAAGTCA------TCCTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995239 27 - 2117846 TCCACACA-------AAC-----------TTTGGAGTCA------ACCTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906347 38 - 16357246 TCCATACA-------TACGGTGGAAGAGGTTTGGAGTCA------ACCTCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390616 27 - 1807191 TCCACACA-------AAC-----------TTTGGAGTCA------ACCTCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70182 27 + 5963231 TCCACACA-------AAC-----------TTTGGAGTCA------ACCTCT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5758438 27 + 108171978 TCCACACA-------AAC-----------TTTGGAGTCA------ACCTCT i micMur3.chr7 I 33 I 44 s otoGar3.GL873526 36329481 27 - 42659167 ACCACACA-------AAC-----------TTTGGAGTCA------ATCTCT i otoGar3.GL873526 I 17 C 0 s mm10.chr15 82857811 40 + 104043685 TCCTTATACTGTAGTCAC-----------CTATAAGTCAGATCTGACTGCT i mm10.chr15 C 0 C 0 s canFam3.chr10 46137048 27 - 69331447 TCCACACA-------GAC-----------CTAGGGCTTA------ACCTCT i canFam3.chr10 I 18 I 1 s dasNov3.JH570235 120512 23 + 1056298 CCCACACA-------TAT-----------GTTAGGGTCA------AC---- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5124473 286 - 6317780 I a score=373838.000000 s hg38.chr22_GL383582v2_alt 126688 42 + 162811 TCTTGGCATATGACTGTGTCTACAGCACCC--CTCTCTCCACCA s panTro5.chr22 28906630 42 + 37823149 TCCTGGCATATGACTGTGTCTACAGCACCC--CTCTCTCCACCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181181 42 + 50109623 TCCTGGCATATGACTGTGTCTACAGCACCC--CTCTCTCCACCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204010 42 + 4464012 TCTTGGCATATGATTGTGTCTACAGCACCC--CTCTCTCCACCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699823 40 - 115148730 TCTTGCC--ATGACTGTGTCTAAAATACCC--CTCTCTCCACCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316269 44 + 92844088 TCTTGGCATAAGATTGCGTCTAAGGCACCCCTCTCTCTCCAGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662634 44 - 96509753 TCTTGGCATAAGATTGCGTCTAAGGCACCCCTCTCTCTCCAGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159239 44 - 13098629 TCTTGGCATAAGATTGCGTCTAAGGCACCCCTCTCTCTCCAGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119125 44 - 4483953 TCTTGGCGTAAGATTGCGTCTAAGGCACCCCTCTCTCTCCAGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749447 44 + 33263144 TCTTGGCGTAAGACTGCATCTAAGGCACCCCTCTCTCTCCAGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030448 44 - 14338769 TCTTGGCATAAGATTGCGTCTAAGGCACCCCTCTCTCTCCAGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968734 44 + 1946073 TCTTGGCCTAAGACTGTGTCTAAGGCACCCTTCTCTCTCCAGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995266 42 - 2117846 TCTTGGCATATGACTGTTTTGAAGGCACCC--CTCTCTCAACTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906385 42 - 16357246 TCTTGGCATATGATTGTTTTGAAGGCACCC--CTCTCTCAACCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390643 42 - 1807191 TCGTGGCATATGATTGTTTTGAAGGCACCC--CTCTCTCAACCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70209 41 + 5963231 T-TTGGCATATGACTGTTTTGAAGGCACCC--CTCTCTCAACCA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36329508 22 - 42659167 TCTT---------------------CACCC-TTTCTACCATCCA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82857851 40 + 104043685 TCTTGACATAAAATTGTCTTCAAAGTAC----CTCTCTTGACCA i mm10.chr15 C 0 C 0 s canFam3.chr10 46137076 42 - 69331447 TCTTGACATGTAATGGTGTGCAAGGCACTC--CTCCCTTCAACC i canFam3.chr10 I 1 I 2 s dasNov3.JH570235 120535 34 + 1056298 ------CACATAATTGTGTTCAAGGTACCC----TTCCCAACTA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5124473 286 - 6317780 I e micMur3.chr7 5758465 44 + 108171978 I a score=86914.000000 s hg38.chr22_GL383582v2_alt 126730 9 + 162811 CTCTCCTTC s panTro5.chr22 28906672 9 + 37823149 CTCTCCTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181223 9 + 50109623 CTCTCCTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204052 9 + 4464012 CTCTCCTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699863 9 - 115148730 CTCTCCTTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316313 9 + 92844088 CTCTCCTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662678 9 - 96509753 CTCTCCTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159283 9 - 13098629 CTCTCCTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119169 9 - 4483953 CTCTCCTTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749491 9 + 33263144 CTCTCCTTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030492 9 - 14338769 CTCTCCTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968778 9 + 1946073 CTTTCCTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995308 9 - 2117846 CTCTCCCTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906427 9 - 16357246 GTCTCCCTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390685 9 - 1807191 CTCTCCCTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70250 9 + 5963231 CTCTCCCTC i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36329530 5 - 42659167 CTCTC---- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46137120 8 - 69331447 CTATCCTT- i canFam3.chr10 I 2 C 0 s dasNov3.JH570235 120569 8 + 1056298 CGCACCCC- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857891 0 + 104043685 C e proCoq1.NW_012136747v1 5124473 286 - 6317780 I e micMur3.chr7 5758465 44 + 108171978 I a score=59754.000000 s hg38.chr22_GL383582v2_alt 126739 5 + 162811 AATTC s panTro5.chr22 28906681 5 + 37823149 AATTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181232 5 + 50109623 AATTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204061 5 + 4464012 AATTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699872 5 - 115148730 AATTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316322 5 + 92844088 AGTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662687 5 - 96509753 AGTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159292 5 - 13098629 AGTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119178 5 - 4483953 AGTTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749500 5 + 33263144 AGTTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030501 5 - 14338769 AGTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968787 5 + 1946073 AGTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995317 5 - 2117846 AATTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906436 5 - 16357246 AATTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390694 5 - 1807191 AATTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70259 5 + 5963231 AATTT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5758509 5 + 108171978 AATTA i micMur3.chr7 I 44 C 0 s otoGar3.GL873526 36329535 5 - 42659167 AATTA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46137128 5 - 69331447 AACTC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 120577 5 + 1056298 AATTC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857891 0 + 104043685 C e proCoq1.NW_012136747v1 5124473 286 - 6317780 I a score=861069.000000 s hg38.chr22_GL383582v2_alt 126744 56 + 162811 CCAGGTAC-AAAGGGCTAG---ACTT--AAGCCAGTGAATAGCAGTGACTATTCTTCCAGAT s panTro5.chr22 28906686 56 + 37823149 CCAGGTAC-AAAGGGCTAG---ACTT--AAGCCAGTGAATAGCAGTGACTATTCTTCCAGAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181237 56 + 50109623 CCAGGTAC-AAAGGGCTAG---ACTT--AAGCCAGTGAATAGCAGTGACTATTCTTCCAGAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204066 56 + 4464012 CCAGGTAC-AAAGGGCTAG---ACTT--AAGCCAGTGAATAGCAGTGACTATTCTTCCAGAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699877 56 - 115148730 CCAGGTAC-AAAGGGCTAG---ACTT--AAGCCAGTGAATAGCAGTGACTATTCTTCCAGAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316327 57 + 92844088 CCAGGTAC-AAAGGGCTAG---ACTT-AAAGCCAGTGAGTATCAGTGACTATTCTTCCAGAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662692 57 - 96509753 CCAGGTAC-AAAGGGCTAG---ACTT-AAAGCCAGTGAATATCAGTGACTATTCTTCCAGAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159297 56 - 13098629 CCAGGTAC-AAAGGGCTAG---ACTT--AAGCCAGTGAATATCAGTGACTATTCTTCCAGAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119183 56 - 4483953 CCAGGTAC-AAAGGGCTAG---ACCT--AAGCCAGTGAGTATCAGTGACTATTCTTCCAGAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749505 56 + 33263144 CCAGGTAC-AAAGGGCTAG---ACTT--AAGCCAGTGAATATCAGTGACTATTCTTCCAGAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030506 56 - 14338769 CCAGGTAC-AAAGGGCTAG---ACCT--AAGCCAGTGAGTATCAGTGACTATTCTTCCAGAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968792 56 + 1946073 CCAGGTAC-AAAGGGCTAG---ACTT--AAGCCAGTGAATAGCAGTGACTATTCTTCCAGAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995322 53 - 2117846 CCAGGTATAAAAGGGCTAG---ACTC--AAGCCAGTGAATAGC----ACTATCCTTCCAGAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906441 56 - 16357246 CCAGGTAC-AAAGGGCTAG---ACTC--AAGCCAGTGAATAGCAGTGACTATCCTTCCAGAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390699 56 - 1807191 CCAGGTAC-AAAGGGCTAG---ACTC--AAGCCAGTGAATAGCAGTGACTATCCTTCCAGAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70264 56 + 5963231 CCAGGTAC-AAAGGGCTAG---ACTC--AAGCCAGTGAATAGCAGTGACTATCCTTCCAGAT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5758514 56 + 108171978 CCAGGTAC-AAAGGGCTAG---ACTT--AAGCCAGGGAGCAGCAGTGACTATTCTTCTAGAT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5124759 56 - 6317780 CCAGGTAC-AAAGGGCTGG---ACAT--AAGCCAGGGAGTAGCAGTGACTATTCTTCTAGAT i proCoq1.NW_012136747v1 I 286 C 0 s otoGar3.GL873526 36329540 52 - 42659167 ------CC-AAAGGGCTAG---ACTTAAAAGTGAGGGAATAGCAGTGACTATTATTCCAGAT i otoGar3.GL873526 C 0 I 731 s canFam3.chr10 46137133 57 - 69331447 CCAGGGAC-AAAGGCCTAGGGAGCAT--AAGCCA--AAGTAGCAGTGACCCTTCTTCCAGAT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 120582 60 + 1056298 CCAAGTACAAAAGGGGTAGGCAGCAT--AAGCCAGAGTATAGCAGTGACTGTTCTATCACAT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857891 0 + 104043685 C a score=2676287.000000 s hg38.chr22_GL383582v2_alt 126800 232 + 162811 TATTTTGGGAGGTTTCCAAGAAGTTCCAGCACCTTTACCCGCCATGTGGTATTTGT-------ATTTGCCAG-TTTT-TTAAATTCAC--AGTTATTACTGGCCATTACTATGA---AAGAATTAGAAGCAATCATCTTGGAGGACAGC-AAAAAAC-AGAGAGGAAAATAGGAATTCATCAAGCCTA-GGACCCAGACTCTTT----CAAAGTTATCTGACTGAGCCACCACTTTGTATTACCTATTATAAT s panTro5.chr22 28906742 233 + 37823149 TATTTTGGGAGGTTTCCAAGAAGTTCCAGCACCTTTACCCGCCATGTGGTATTTGT-------ATTTGCCAG-TTTT-TTAAATTCAC--AGTTATTACTGGCCATTACTATGA---AAGAATTAGAAGCAATCATCTTGGAGGACAGCAAAAAAAC-AGAGAGGAAAATAGGAATTCATCAAGCCTA-GGACCCAGACTCTTT----CAAAGTTATCTGACTGAGCCACCACTTTGTATTACCTATTATAAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181293 233 + 50109623 TATTTTGGGAGGTTTCCAAGAAGTTCCAGCACCTTTACCCGCCATGTGGTATTTGT-------ATTTGCCAG-TTTT-TTAAATTCAC--AGTTATTACTGGCCATTACTATGA---AAGAATTAGAAGCAATCATCTTGGAGGACAGCAAAAAAAC-AGAGAGGAAAATAGGAATTCATCAAGCCTA-GGACCCAGACTCTTT----CAAAGTTATCTGACTGAGCCACCACTTTGTATTACCTATTATAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204122 227 + 4464012 TATTTTGGGAGGTTTCCAAGAAGTTCCAGCACCTTTACCCGCCATGTGGTATTTGT-------ATTTGCCAG-TTTT-TTAAATTCAC--AGCTATTACTGGCCATTACTATGA---AAGAATTAGAAGCAATCATCTTGGAGGACAGC-AAAAAAC-AGAGAGGAAAATAGGAATTCATCA-----A-GGACCCAGACTCTTT----CAAAGTTATCTGACTGAGCCACCACTTTGTATTACCTATTATAAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106699933 231 - 115148730 TATTTTGGGAGGTTTCCAGGAATTTCCAGCACCTTTACCTGCCATGTGATATTTTT-------ATTTGCCAA-TTTT-TTATATT--C--AGTTATTACTGGCCATTACTATGA---AAGAATTAGAAGCAATCATCTTGGAGGACAGC-AAAAAAC-AGAGAGGAAAATAGGAATTCATCAAGCCTA-GGACCCAGACTCTTT---CCAAAGTTATCTGACTGAGCCACCACTTTGTATTACCTTTTATAAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316384 238 + 92844088 TATTTTGGGGGGTTTTCAAGAAGTTTCAGCACCTTTACCCACCATGTGGTATTTTT-------ATTTGCCAA--TTT-TTAAACTCAC--AGTTACTACTGGCCATTACTATGAAAGAAGAATTAGAAGCAATCATCTTGGAGGACAGC-AAAAAAC-AGAGAGGAAAGCAGGAATTCATCAAGCCTA-GGACCCAGACTCTTTCCACCAAAGTTATCTGACTGAGTCACCGCTTTGTATTACCTTTTATGAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87662749 236 - 96509753 TATTTTGGGGGGTTTTCAAGAAGTTTCAGCACCTTTACCCACCATGTGGTATTTTT-------ATTTGCCAA--TTT-TTAAACTCAC--AGTTACTACTGGCCATTACTATGAAAGAAGAATTAGAAGCAATCATCTTGGAGGACAGC-AAAAA---AGAGAGGAAAGCAGGAATTCATCAAGCCTA-GGACCCAGACTCTTTCCACCAAAGTTATCTGACTGAGTCACCGCTTTGTATTACCTTTTATGAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159353 238 - 13098629 TATTTTGGGGGGTTTTCAAGAAGTTTCAGCACCTTTACCCACCATGTGGTATTTTT-------ATTTGCCAA--TTT-TTAAACTCAC--AGTTACTACTGGCCATTACTATGAAAGAAGAATTAGAAGCAATCATCTTGGAGGACAGC-AAAAAAC-AGAGAGGAAAGCAGGAATTCATCAAGCCTA-GGACCCAGACTCTTTCCACCAAAGTTATCTGACTGAGTCACCGCTTTGTATTACCTTTTATGAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119239 238 - 4483953 TATTTTGGGGGGTTTTCAAGAAGTTTCAGCACCTTTAGCCACCATGTGGTATTTTT-------ATTTGCCAA--TTT-TTAAACTCAC--AGTTACTACTGGCCATTACTATGAAAGAAGAATTAGAAGCAATCATCTTGGAGGACAGC-AAAAAAC-AGAGAGGAAAGCAGGAATTCATCAAGCCTA-GGACCCAGACTCTTTCCACCAAAGTTATCTGACTGAGCCACTGCTTTGTATTACCTTTTATGAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749561 229 + 33263144 TATTTTGGGGGGTT---------TTTCAGGACCTTTACCCACCATGTGGTATTTTT-------ATTTGCCAA--TTT-TTAAACTCAC--AGTTACTACTGGCCATTACTATGAAAGAAGAATTAGAAGCAATCATCTTGGAGGACAGC-AAAAAAC-AGAGAGGAAAGCAGGAATTCATCAAGACTA-GGACCCAGACTCTTTCCACCAAAGTTATCTGACTGAGCCACCGCTTTGTATTACCTTTTATGAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030562 238 - 14338769 TATTTTGGGGGGTTTTCAAGAAGTTTCAGCACCTTTACCCACCATGTGGTATTTTT-------ATTTGCCAA--TTT-TTAAACTCAC--AGTTACTGCTGGCCATTACTATGAAAGAAGAATTAGAAGCAATCATCTTGGAGGACAGC-AAAAAAC-AGAGAGGAAAGCAGGAATTCATCAAGCCTA-GGACCCAGACACTCTCCACCAAAGTTATCTGACTGAGCCACTGCTTTGTATTACCTTTTACGAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 968848 228 + 1946073 TATTTTGGG--------TAAAAGTTTCAGCACCTTTACCCACCATGTCGTATTTTT-------ATTTGAAAA--TTT-TTAAACT--C--AGTTACTACTGGCCATTACTATGAAAGAAGAATTAGAAGCAATCATCTTGGAGGACAGC-AAAAAAC-AGAGAGGAAAGCAGGAATTCATCAAGCCTA-GGACGCAGACTCTTTCCACCAAAGTTATCTGACTGAGCCACCGCTTTGTATTACCTTTTATGAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995375 217 - 2117846 TATTTTGGGGGGTTTCTAGTAAGTTCCAGCACCTTTACCGGCCAAGTGGTATTTTT-------ATTTGCCACATTTTAAAAAATT--C--AGTTATTACTGGCCATTACTATGAAAGAAGAATTTGAAGCAATCATCTTGGAGGACAGC-AAAAAAC---AGAGGAAAATAGGAATCCTTCAAGCCTAAGGACCCAGACTCTTT---CCAAAGTTACCTGACTCAGCCACT------------------TAAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906497 219 - 16357246 TATTCTGGGGAGTTTCCAATAAGTTCCAGCACCTTTACTCGCCAAGTGGTATTTTT-------ATTTGCCACATTTT-TTAGATT--C--AGTTATTACTGGTCTTTACTATGAAAGAAGAATTTGAAGCAATCATCTTGTAGGACAGC-AAAAAAACAGAGAGTAAAATAGGAATTCTTCAAGCCTAGGGATCCAGACTCTTT---CCAAAGTTATCTGACTCAGCCACT------------------TAAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1390755 218 - 1807191 TATTTTGGGGGGTTTCCAATAAGTTCCAGCACCTTTACCCGCTAAGTGGTATTTTT-------ATTTGCCACATTTT-TTAAATT--C--AGTTATTACTGGCCATTACTATGAAAGAAGAATTTGAAGCAATCATCTTGGAGGACAGC-AAAAAAC-AGAGAGGAAAATAGGAATTCTTCAAGCCTAGGGACCCAGACTCTTT---CCAAAGTTATCTGACTCAGCCACT------------------TAAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70320 218 + 5963231 TATTTTGGGGGGTTTCCAATAAGTTCCAGCACCTTTACCTGCCAAGTGGTATTTTT-------ATTTGCCACATTTT-TAAAATT--C--GGTTATTATTGGCCTTTACTATGAAAGAAGAATTTGAAGCAATCATCTTGGAGGACAGC-AAAAAAC-AGAGAGGAAAACAGGAATTCTTTAAGCCTAGGGACCCAGACTCTTT---CCAAAGTTACCTGACTCAGCCACT------------------TAAT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5758570 235 + 108171978 ACTTTTTGGAGATATGCAAGAAGTTCCCAAACCTTTAAGCCCCATGTGGT-TTTTT-------ATTTGCCAA---TC-TAGTATTCACAAAGTTATTACTGGCCGTTACTGTGAAAGAAGAAATGGAAGCAATCACTTTGGAGTGTAGC-AAAAACT-AGAGAAGAAAATAAGAATTCATTAAGCCTA-GGACTCAGATGCTTC---CCAAAGTTATCTGATTGGGCCACTACTTTGCATTACCTTTGCTAAT i micMur3.chr7 C 0 I 32 s proCoq1.NW_012136747v1 5124815 235 - 6317780 TCTTTCTGGAGATCTGCAAGAAGTTCCCGTACTGTTAAGCCCCATGTGGT-TTTTT-------ATTTGCCAA---TC-TAGTATTAACAGAGTTATTACTGGCCGTTACTGTGAAAGAAGAAATGGAAGCAATCCCTTTGGAGTGTAGC-AAAAACT-AGAGAGGAAAATAAGAATTCATTAAGCCTA-GGATCCAGACTCTTC---CCAAAGTTATCTGATTGGGCCACTACTTTGCATTACCTTTGCTAAT i proCoq1.NW_012136747v1 C 0 I 32 s canFam3.chr10 46137190 240 - 69331447 TCTTTCTGGAGATCTACAAGAAGTTCCAGCACCTCTAACGCCCACATTTTTTTTTTTTTTTTAATGTGCCAA---CC-TAGTATTCAG--AGTTATTACTGGCCATTACTGTGAAAGAGGGAATTAAAACAGTCACTTTGGAGGACAGT-ACAAGAT-ATGGAGGAAAATAAAAATTCATCAAG-CTA-GGACCTAGACTCTTC---CCAAAGTCATCTGATTGGGTCAACATGTTGTATTACCTTTGCTAAT i canFam3.chr10 C 0 I 23 s dasNov3.JH570235 120642 234 + 1056298 TCCTCCTGGAGGTCTGCAAGAAATGCCAGCACTTTTAACTTCCACGTGG--TTTTT-------ATTTGCCATTCTAA-TTGCATTCACAAAAACATTATTGGCCATTGCTCTGAAAGAAGGAACTGAAA-AGTCACTTTGGAGAAGAGT-AAAAGAT-ACTGA--AAAAGAAAAAATTATCCAGCTTA-GGACCTAGACCCTTC---CCAAAGTCATCTGACTGAGCCAACCCTCTGCATTACCTTTGCTAAT i dasNov3.JH570235 C 0 I 6 e mm10.chr15 82857891 0 + 104043685 C e otoGar3.GL873526 36329592 731 - 42659167 I a score=184776.000000 s hg38.chr22_GL383582v2_alt 127032 25 + 162811 CCCTCTT-----AATCAATCA--AGCTG--------ATTT s panTro5.chr22 28906975 25 + 37823149 CCCTCTT-----AATCAATCA--AGCTG--------ATTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181526 25 + 50109623 CCCTCTT-----AATCAATCA--AGCTG--------ATTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204349 25 + 4464012 CCCTCTT-----AATCAATCA--AGCTG--------ATTT i gorGor5.CYUI01015375v1 C 0 I 1 s nomLeu3.chr7b 106700164 25 - 115148730 CCCTCTT-----AATCAATCA--AGCTG--------ATTT i nomLeu3.chr7b C 0 I 1 s rheMac8.chr10 84316622 30 + 92844088 CCCTCTTAAAACAATCAATCA--AGCTG--------ATTT i rheMac8.chr10 C 0 I 1 s macFas5.chr10 87662985 30 - 96509753 CCCTCTTAAAACAATCAATCA--AGCTG--------ATTT i macFas5.chr10 C 0 I 1 s macNem1.NW_012012688v1 7159591 30 - 13098629 CCCTCTTAAAACAATCAATCA--AGCTG--------ATTT i macNem1.NW_012012688v1 C 0 I 1 s cerAty1.NW_011999588v1 4119477 30 - 4483953 CCCTCTTAAAACAATCAATCA--AGCTG--------ATTT i cerAty1.NW_011999588v1 C 0 I 1 s chlSab2.chr19 24749790 30 + 33263144 CCCTCTTAAAACAATCAATCA--AGCTG--------ATTT i chlSab2.chr19 C 0 I 1 s manLeu1.NW_012102031v1 14030800 30 - 14338769 CCCTCTTAAAACAATCAATCA--AGCTG--------ATTT i manLeu1.NW_012102031v1 C 0 I 1 s colAng1.NW_012115588v1 969076 21 + 1946073 CCCTCTT---------AATCA--AGCTG--------ATTT i colAng1.NW_012115588v1 C 0 I 2 s calJac3.chrUn_GL286373 1995592 25 - 2117846 CTCTCTT-----AATCAATCG--AGCCA--------TTTT i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8906716 29 - 16357246 CTCTCTT---------AATCG--AGCCGATTTTTTTTTTT i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1390973 29 - 1807191 CTCTCTT-----AATCAATTG--AGCCT----TTTTTTTT i cebCap1.NW_016107750v1 C 0 I 1 s aotNan1.NW_018512383v1 70538 26 + 5963231 CTCTCTT-----AATCAATCA--AGCCA-------ATTTT i aotNan1.NW_018512383v1 C 0 I 1 s canFam3.chr10 46137453 27 - 69331447 TCTTCTT-----AGATAATCA--AGAGA------TCATTT i canFam3.chr10 I 23 I 2 s dasNov3.JH570235 120882 27 + 1056298 TCTTCTT-----AAGAATTTAAGAGCAG--------ATTT i dasNov3.JH570235 I 6 I 2 e mm10.chr15 82857891 0 + 104043685 C e otoGar3.GL873526 36329592 731 - 42659167 I e proCoq1.NW_012136747v1 5125050 32 - 6317780 I e micMur3.chr7 5758805 32 + 108171978 I a score=1154339.000000 s hg38.chr22_GL383582v2_alt 127057 96 + 162811 TTTCCCCTTTCACCTGGGCCTGTCTCCT---CAGAGTCAGAGATGAAAGGGACAAGGCCAAATTGCTCCAA-GTGACTTTAGAACCAATTACTT-AAAAAA s panTro5.chr22 28907000 96 + 37823149 TTTCCCCTTTCACCTGGGCCTGTCTCCT---CAGAGTCAGAGATGAAAGGGACAAGGCCAAATTGCTCCAA-GTGACTTTAGAACCAATTACTT-AAAAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181551 95 + 50109623 TTTCCCCTTTCACCTGGGCCTGTCTCCT---CAGAGTCAGAGATGAAAGGGACAAGGCCAAATTGCTCCAA-GTGACTTTAGAACCAATTACTT--AAAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204375 96 + 4464012 TTTCCCCTTTCACCTGGGCCTGTCTCCT---CAGAGTCAGAAATGAAAGGGACAAGGCCAAATTGCTCCAA-ATGACTTTAGAACCAATTACTT-AAAAAA i gorGor5.CYUI01015375v1 I 1 C 0 s nomLeu3.chr7b 106700190 97 - 115148730 TTTCCCCTTTCACCTGGGCCTGTCTCCT---CAGAATCAAAGATGAAAGGGACAAGGCCAAATTGCTCCAA-ATGACTTCAGAACCAACTATTTAAAAAAA i nomLeu3.chr7b I 1 C 0 s rheMac8.chr10 84316653 93 + 92844088 CCCCCCCTTTTTCCTGGGCCTGTCTCCT---CAGAGTTAGAGATGAATGGGACAAGGCCAAATTGCTCCAA-ATGACTTTAGAACCAAT---TT-AAAAAA i rheMac8.chr10 I 1 C 0 s macFas5.chr10 87663016 93 - 96509753 CCCCCCCTTTTTCCTGGGCCTGTCTCCT---CAGAGTTAGAGATGAATGGGACAAGGCCAAATTGCTCCAA-ATGACTTTAGAACCAAT---TT-AAAAAA i macFas5.chr10 I 1 C 0 s macNem1.NW_012012688v1 7159622 93 - 13098629 CCCCCCCTTTTTCCTGGGCCTGTCTCCT---CAGAGTTAGAGATGAATGGGACAAGGCCAAATTGCTCCAA-ATGACTTTAGAACCAAT---TT-AAAAAA i macNem1.NW_012012688v1 I 1 C 0 s cerAty1.NW_011999588v1 4119508 93 - 4483953 CCCCCCCTTTTTCCTGGGCCTGTCTCCT---CAGAGTTAGAGATGAATGCGACAAGGCCAAATTGCTCCAA-ATGACTTTAGAACCAAT---TT-AAAAAA i cerAty1.NW_011999588v1 I 1 C 0 s chlSab2.chr19 24749821 93 + 33263144 CCCCCCCTTTTTCCTGGGCCTGTCTCCT---CAGAGTTAGAGATGAACGGGACAAGGCCAAATTGCTCCAA-ATGACTTTAGAACCAAT---TT-AAAAAA i chlSab2.chr19 I 1 C 0 s manLeu1.NW_012102031v1 14030831 93 - 14338769 CCCCCCCTTTTTCCTGGGCCTGTCTCCT---CAGAGTTAGAGATGAATGGGACAAGGCCAAATTGCTCCAA-ATGACTTTAGAACCAAT---TT-AAAAAA i manLeu1.NW_012102031v1 I 1 C 0 s colAng1.NW_012115588v1 969099 93 + 1946073 CCCCCCCTTTTTCCTGGGCCTGTCTCCT---CAGAGTCAGAGATGAACGGGACAAGGCCAAATTGCTCCAA-ATGACTTTAGAACCAAT---TT-AAAAAA i colAng1.NW_012115588v1 I 2 C 0 s calJac3.chrUn_GL286373 1995618 90 - 2117846 TTTTTCCTTTCGCCTGGGCCTGTATCCT---CAG--TCAGAAATGAACA-GACAAGGCCAACTTGCTCCAA----ACTTTAGAACCAATTATTT-TAAAAA i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8906746 90 - 16357246 TTCTTCCTTTCGCCTGGGCCTGTATCCT---CGG--TCAGAAATGAACA-GACAAGGCCAAATTGCTCCAA----ACTTTAGAACCAATTATTT-AAAAAA i saiBol1.JH378157 I 1 C 0 s cebCap1.NW_016107750v1 1391003 90 - 1807191 TTTTTCCTTTTGCCTGGGCCTGTATCCT---CAG--TCAGAAATGAACA-GATAAGGCCAAACTGCTCCAA----ACTTTAGAGCCAATTATTT-AAAAAA i cebCap1.NW_016107750v1 I 1 C 0 s aotNan1.NW_018512383v1 70565 90 + 5963231 TTTTTCCTTTCACCTGGGCCTGTATCCT---CAG--TCAGAAATGAACA-GACAAGGCCAAATTGCTCCAA----ACTTTAGAACCAATTATTT-AAAAAA i aotNan1.NW_018512383v1 I 1 C 0 s micMur3.chr7 5758837 99 + 108171978 TTTTTCCTTTTGCCTGGGTCTGTCTCCTTACCAGAGTCAGAGATGAATAGAATAAGGCCAAACTGCTCCAA-ATGACTTTAAAACCAATTGTTT-AAAAAA i micMur3.chr7 I 32 I 361 s proCoq1.NW_012136747v1 5125082 99 - 6317780 TTTTTCCTTTTGCCTGGGCCTGTCTCCTTCTCAGAGTCAGAGATGAATAGAACAAAGCCAAACTGCTCCAA-ATGACTTTAAAACCAATTGTTT-AAAAAA i proCoq1.NW_012136747v1 I 32 I 379 s canFam3.chr10 46137482 98 - 69331447 TTTTGCCTTTTGTCTGGGCCTGTCTCCTTCTCAGAGTCAG--CTGAGTAAGACAAGACCAAGTTGCTCCAAAAAGTCTTTAAAATCAATTATTT-AAAAAG i canFam3.chr10 I 2 I 156 s dasNov3.JH570235 120911 98 + 1056298 TTTCACCCTTTGCCTAGGCCTGTCTCTTTCAAAGAGTCAGAGGTGAATAGGATAAAGCCAAACTGCTCCAAAATGACTTTAAAATCAAA--ATT-AAAAAA i dasNov3.JH570235 I 2 C 0 e mm10.chr15 82857891 0 + 104043685 C e otoGar3.GL873526 36329592 731 - 42659167 I a score=477385.000000 s hg38.chr22_GL383582v2_alt 127153 57 + 162811 ---ACAAGTTCC-AAAATACATATAGGGTAAAGTGA--GGTG-TAATAGACAGTTTAGTTTAGT-- s panTro5.chr22 28907096 57 + 37823149 ---ACAAGTTCC-AAAATACATATAGGGTAAAGTGA--GGTA-TAATAGACAGTTTAGTTTAGT-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181646 57 + 50109623 ---ACAAGTTCC-AAAATACATATAGGGTAAAGTGA--TGTA-TAATAGACAGTTTAGTTTAGT-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204471 57 + 4464012 ---ACAAGTTCC-AAAATACATATAGGGTAAAGTGA--GGTA-TAATAGACAGTTTAGTTTAGT-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106700287 58 - 115148730 ---ACAAGTTCC-AAAACACATAAAGGGTAAAGTGA--GGTACTAACAGACAGTTTAGTTTAGT-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316746 58 + 92844088 ---ACAAGTTCC-GAAACACATATGAGGTAAAGTGA--GGTACTAATAGACAGTTTAGTTTAGT-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87663109 58 - 96509753 ---ACAAGTTCC-GAAACACATATGAGGTAAAGTGA--GGTACTAATAGACAGTTTAGTTTAGT-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159715 58 - 13098629 ---ACAAGTTCC-GAAACACATATGAGGTAAAGTGA--GGTACTAATAGACAGTTTAGTTTAGT-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119601 58 - 4483953 ---ACAAGTTCC-GAAACACATATGAGGTAAAGTGA--GGTACTAATAGACAGTTTAGTTTAGT-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749914 57 + 33263144 ---ACAAGTT-C-GAAACACATATGAGGTAAAGTGA--GGTACTAATAGACAGTTTAGTTTAGT-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030924 58 - 14338769 ---ACAAGTTCC-GAAACACATATGAGGTAAAGTGA--GGTACTAATAGACAGTTTAGTTTAGT-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 969192 58 + 1946073 ---ACAAGTTCC-GAAATACATATGGGGTAAAGTGA--GGTACTAATAGACAGTTTAGTTTAGT-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995708 53 - 2117846 ---ACAAGTTCC-AAAACACAAAGGGACTAAAGTAA--GGTACTAATAGAC-----AGTTTAGT-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906836 54 - 16357246 ---ACAAGTTCCAAAAACACAAACGGGCTAAAGTAA--GGTACTAATAGAC-----AGTTTAGT-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1391093 53 - 1807191 ---ACAAGTTTC-AAAACACAAAGGGGCTAAAGTAA--CGTACTAATAGAC-----AGTTTAGT-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70655 53 + 5963231 ---ACAAGTTCC-AAAACACAAAGGGGCTAAAGTAA--GGTACTAATAGAC-----AGTTTACT-- i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46137736 48 - 69331447 ---AAAAGCTGT-GAAACACCTATGTGGTAGAGGAA--GTTA-----GGACAATTTTCC------- i canFam3.chr10 I 156 C 0 s dasNov3.JH570235 121009 62 + 1056298 AAAAGAACTTAT-GAAACACATATGGCAAAGGGTACATATTACTAATACACAAT---GCTTTCTCC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857891 0 + 104043685 C e otoGar3.GL873526 36329592 731 - 42659167 I e proCoq1.NW_012136747v1 5125181 379 - 6317780 I e micMur3.chr7 5758936 361 + 108171978 I a score=999562.000000 s hg38.chr22_GL383582v2_alt 127210 86 + 162811 TACAATGG---TTTATGAAGCTA---GTTTCCTAGTTCCC-CTG-AAGGGG--AGCTGAAAATGGAGTTGCCTGCAG--GAAAGTCAACAAccttttt s panTro5.chr22 28907153 86 + 37823149 TACAACGG---TTTATGAAGCTA---GTTTCCTAGCTCCC-CTG-AAGGGG--GGCTGAAAATGGAGTTGCCTGCAG--GAAAGTCAACAAccttttc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181703 86 + 50109623 TACAATGG---TTTATGAAGCTA---GTTTCCTAGTTCCC-CTG-AAGGGG--AGCTGAAAATGGAGTTGCCTGCAG--GAAAGTCAACAAccttttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204528 86 + 4464012 TACAATGG---TTTATGAAGCTA---GTTTCCTAGTTCCC-CTG-AAGGGG--AGCTGAAAATGGAGTTGCCTGCAG--GAAAGTCAACAAccttttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106700345 86 - 115148730 TACAATGG---TTTATGAAGCTA---CTTTCCTAGTTCCC-CTG-AAGGGG--AGCTGAAAATGGAGTTGCCTGCAG--GAAAGTCAACAGCcctttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316804 78 + 92844088 TACAATGG---TTTATGAAG-----------CTAGTTTCC-CTG-AAGGGG--AGCTGAAAGTGAAATTGCCTGCAC--GAAAGTCAACAatcctttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87663167 78 - 96509753 TACAATGG---TTTATGAAG-----------CTAGTTTCC-CTG-AAGGGG--AGCTGAAAGTGAAGTTGCCTGCAC--GAAAGTCAACAatcctttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159773 78 - 13098629 TACAATGG---TTTATGAAG-----------CTAGTTTCC-CTG-AAGGGG--AGCTGAAAGTGAAGTTGCCTGCAC--GAAAGTCAACAatcctttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119659 78 - 4483953 TACAATGG---TTTATGAAG-----------CTAGTTTCC-CTG-AAGGGG--AGCTGAAAGTGAAGTTGCCTGCAC--GAAAGTCAACAaccctttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24749971 78 + 33263144 TACAATGG---TTTATGAAG-----------CTAGTTTCC-CTG-AAGGGG--AGCTGAAAGTGAAGTTGCCTGCAG--GAAAGTCAACAaccctttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14030982 78 - 14338769 TACAATGG---TTTATGAAG-----------CTAGTTTCC-CTG-AAGGGG--AGCTGAAAGTGAAGTTGCCTGCAC--GAAAGTCAACAaccctttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 969250 86 + 1946073 TACAATGG---TTTATGAAGCTA---GTTTCCTAGTTTCC-CTG-AAGGGG--AGCTGAAAGTGAAGTTGCCTGCAG--GAAAGTCAACAaccctttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995761 84 - 2117846 TACAATTG---TTTATGAAGCTA---GTTTTCTAGTTCCC-CTG---GGGG--AGCTGAAAATGGAGTTGCCTGCAG--CAAAGTCaatgatcctctt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906890 84 - 16357246 TACAATTG---TTTATGAAGCTA---GTTTTCTAGTTCCC-CTG---GGGG--AGCTGAAAATGGAGTTGCCTgcag--caaagtcaacgatcctctt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1391146 87 - 1807191 TACAATTGTTTTTTATGAAGCTA---GTTTTCTAGTTCCC-CTG---GGGG--AGCTGAAAATGGAGCTGCCTgcag--caaagtcaacgattctctt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70708 84 + 5963231 TACAATTG---TTTATGAAGCTA---GTTTTCCAGTTCCC-CTG---GGGG--AGCTGAAAATGGAGTTGCCTgcag--caaagtcaacgatcctctt i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5759297 86 + 108171978 TACAATGG---TTTATGAAGCCA---GTTCCTTAGTTCCT-CTC-AAGGGG--AGCTGAAAATGGAGTTGTCTGCAA--GAAAGTTagcgatcctttt i micMur3.chr7 I 361 C 0 s proCoq1.NW_012136747v1 5125560 86 - 6317780 TACAATGG---TTTATGAAGCTG---GTTTCTTAGTTCCT-CTC-AGGGGG--AGCTGAAAATGGAGTTGTCTACAG--GAAAGTTagtgatcttttt i proCoq1.NW_012136747v1 I 379 C 0 s canFam3.chr10 46137784 89 - 69331447 CACAATGG---CTTACTAAGTTA-----TTCTTAGTTCCTGCTC-AGGGAGCTAGCGGACAATAAAGTTGCTAGAGGGAGAAAGTCAGTGATCCTTTT i canFam3.chr10 C 0 I 176 s dasNov3.JH570235 121071 90 + 1056298 TACAATGC---TTAATGAAGCTATTAATAGTTTAGTTCCC-TTGCAGAGGA--AGCAGAAAATGGAGTTGCCTGCAG--GTAAATCGgtgatcctctt i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857891 0 + 104043685 C e otoGar3.GL873526 36329592 731 - 42659167 I a score=48982.000000 s hg38.chr22_GL383582v2_alt 127296 3 + 162811 -aaa s panTro5.chr22 28907239 3 + 37823149 -aaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181789 3 + 50109623 -aaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204614 3 + 4464012 -aaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106700431 3 - 115148730 -aaa i nomLeu3.chr7b C 0 I 1 s rheMac8.chr10 84316882 3 + 92844088 -aaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87663245 3 - 96509753 -aaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159851 3 - 13098629 -aaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119737 3 - 4483953 -aaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24750049 3 + 33263144 -aaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14031060 3 - 14338769 -aaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 969336 3 + 1946073 -aaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995845 3 - 2117846 -aaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906974 3 - 16357246 -aaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1391233 3 - 1807191 -aaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70792 3 + 5963231 -aaa i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5759383 3 + 108171978 -aaa i micMur3.chr7 C 0 I 35 s proCoq1.NW_012136747v1 5125646 3 - 6317780 -aaa i proCoq1.NW_012136747v1 C 0 I 35 s canFam3.chr10 46138049 3 - 69331447 -AAA i canFam3.chr10 I 176 C 0 s dasNov3.JH570235 121161 4 + 1056298 aaga i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857891 0 + 104043685 C e otoGar3.GL873526 36329592 731 - 42659167 I a score=393503.000000 s hg38.chr22_GL383582v2_alt 127299 36 + 162811 ggtaagtcagat----ttatcctctccaatccctggagtg s panTro5.chr22 28907242 36 + 37823149 ggtaagtcagat----ttatcctctccaatccctggagtg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181792 36 + 50109623 ggtaagtcagat----ttatcctctccaatccctggagtg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204617 36 + 4464012 ggtaagtcagat----tcatcctctccaatccctggagtg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106700435 36 - 115148730 ggtaagtcagac----tcatcctctccaatccctggagtg i nomLeu3.chr7b I 1 C 0 s rheMac8.chr10 84316885 36 + 92844088 ggtaagtcagac----tcatcctctctaatccctgaagtg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87663248 36 - 96509753 ggtaagtcagac----tcatcctctccaatccctgaagtg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159854 36 - 13098629 ggtaagtcagac----tcatcctctccaatccctgaagtg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119740 36 - 4483953 ggtaagtcagac----tcatcctcttcaatccctgaagtg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24750052 36 + 33263144 ggtaagtcagac----tcatcctctccaatccctgaagtg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14031063 36 - 14338769 ggtaagtcagac----tcatcctctccaatccctgaagtg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 969339 36 + 1946073 gataagtcagac----tcatcctctccaatccctgaagtg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995848 36 - 2117846 tgtaagtcagat----tcatcctctccaatccctgcagtg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8906977 36 - 16357246 tgcaagtcagat----tcatcctctccaatccctccagtg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1391236 36 - 1807191 tgtaagtcagat----tcatcctctccaatccctccagtg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70795 36 + 5963231 tataagtcagat----tcatcctctccaatccctgcagtg i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46138052 33 - 69331447 GGTAAGCTGGAT----TCCTTATCTCCAAGCCC---AATG i canFam3.chr10 C 0 I 4 s dasNov3.JH570235 121165 40 + 1056298 ggtcagtcagattttgttcttatttcaaaagcctgcagtg i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857891 0 + 104043685 C e otoGar3.GL873526 36329592 731 - 42659167 I e proCoq1.NW_012136747v1 5125649 35 - 6317780 I e micMur3.chr7 5759386 35 + 108171978 I a score=2032504.000000 s hg38.chr22_GL383582v2_alt 127335 163 + 162811 -gctcccacctcattctttgggaaactggtctcaaaggcccctgctcc-cacccccttgacctctctgagctcct-cccctatcac--tctctgctctagcc--------------ccacagttgcct--tgttcctggaacagg----cctaccacatatctacataggaactctgttctcacctgc s panTro5.chr22 28907278 163 + 37823149 -gctcccacctcattctttgggaaactggtctcaaaggcccctgctcc-cacccccatgacctctctgagctcct-cccttatcac--tctctgctctagcc--------------ccacagttgcct--tgttcctggaacagg----cctaccacatatctacataggaactctgttctcacctgc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181828 163 + 50109623 -gctcccacctcattctttgggaaactggtctcaaaggcccctgctcc-cacccccatgacctctctgagctcct-cccttatcac--tctctgctctagcc--------------ccacagttgcct--tgttcctggaacagg----cctaccacatatctacataggaactctgttctcacctgc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204653 163 + 4464012 -gctcccacctcattctttgggaaactggtctcaaaggcccctgctcc-gacccccatgacctctctgagctcct-cccctatcac--tctctgctctagcc--------------ccacagttgcct--tgttcctggaacagg----cctaccacatatctacataggaactctgttctcacctgc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106700471 161 - 115148730 -gctcccaccacattctttggaaaactggtctcaaaggcccccactcc-cacccccatgacctatctgagctcct-cccctaccac--tctctgctctagcc--------------ccacagtctcct--tgttcctggaacagc----cctaccacatatctacatagaaa--ctgttctcacctgc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84316921 163 + 92844088 -gttcccacctcattcttggggaaactggtctcaaaggccccggctcc-ca-tcccatgacctctctgacctcct-cccctaccact-tctctgctctagcc--------------ccacagtctcct--tgttcctggaactgg----cctaccgcatatctacataggaactctgttctcacctgc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87663284 163 - 96509753 -gttcccacctcattcttggggaaactggtctcaaaggccccggctcc-ca-tcccatgacctctctgacctcct-cccctaccact-tctctgctctagcc--------------ccacagtctcct--tgttcctggaacggg----cctaccgcatatctacataggaactctgttctcacctgc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7159890 163 - 13098629 -gttcccacctcattcttggggaaactggtctcaaaggccacggctcc-ca-tcccatcacctctctgacctcct-cccctaccact-tctctgctctagcc--------------ccacagtctcct--tgttcctggaacggg----cctaccgcatatctacataggaactctgttctcacctgc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119776 167 - 4483953 -gctcccacctcattcttggggaaactggtctcaaaggccccggctcc-ca-tcccatgacctctctgacctcct-cctctaccact-tctctgctctagcc--------------ccacagtctcct--tgttcctggaacgggcctacctaccgcatatctacataggaactctgttctcacctgc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24750088 163 + 33263144 -gctcccacctcattcttggggaaactggtctcaaaggccctgactcc-ca-tcccatgacctctctgacctcct-ctcctaccact-tctctgctctagcc--------------ccacagtctcct--tgttcctggaagggg----cctaccgcatatctacataggaactctgttctcacctgc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14031099 163 - 14338769 -gctcccacctcattcttggggaaactgctctcaaaggccccggctcc-ca-tcccatgacctctctgacctcct-cctctaccact-tctctgctctagcc--------------ccacagtctcct--tgttcctggaacggg----cctaccgcatatctacataggaactctgttctcacctgc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 969375 163 + 1946073 -gctcccacctcattcttggggaaactggtctcaaaggccccggctcc-ca-tcccatgacctctctgacctcct-cccctaccact-tctctgctctagcc--------------ccacggtctcct--tgttcctggaacggg----cctaccgcatatctacataggaactctgttctcacctgc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1995884 161 - 2117846 -gctcctatctcattccttgggaaaatggtctggaaggccct-gctcc-ca-tcccacgacctctctgacctcct-tccctaccac--tctctgctctagcc--------------ccatagcctctc--tgttcctggaacagg----cccaccacatatctacacaggacctctgttctcacctgc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8907013 161 - 16357246 -gctcctacctcattccttgggaaaattgtctggaaggccct-gctcc-ca-ccccacaacctctctgacctcct-cccctaccac--tctctgctttagcc--------------ccatagtctccc--tgttcctggaacagg----cccaccacatatctacataggacctctgttctcgcctgc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1391272 161 - 1807191 -gctcctacctcattccttgggaaaatggtctggaaggccct-gctcc-ca-tcccaagacctctctgacctcct-cccctaccac--tctctgctctagcc--------------ccatagtctccc--tgttcctggaacagg----cccaccacatatctacctaggacctctgttctcacctgc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70831 157 + 5963231 -gctcctacctcattccttgggaaaatggtctggaaggccct-gctc------cccatgacctctctgacctcct-cccctaccac--tctctgctctagcc--------------ccatagtctccc--tgttcctggaatagg----cccaccacatatctacataggacctctgtactcacctgc i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5759421 161 + 108171978 -actcccatctcattccttgggaagctggtctcagaggccct-gcctc-ca-ccccatgacctctctgacctctt-cctctaccat--cctctgctctagcc--------------ccactgccttct--tgctcctggaatagg----tcaaccatatttctacataggaactctgctttcacttgc i micMur3.chr7 I 35 I 278 s proCoq1.NW_012136747v1 5125684 161 - 6317780 -gctcccatctcactccttgggaagctagtctcagaggccct-gcccc-ca-ccccatgacctctctgacctcct-cccctaccat--cctctgctctagcc--------------ccactgcctcct--tgctcctggaacagg----ccaaccatatttctacataggaactctgctctcacctgc i proCoq1.NW_012136747v1 I 35 I 279 s canFam3.chr10 46138089 170 - 69331447 -CTCCCCATCTCATTCA-AGTGAAGGTGCTTTTAGGGGTCTCTGTCTC-CA-CCCCATTACC--TCTGACCTCTTCCCCCCACTAC--CCTCTGTTCTAGCCTGCTGTATCCTGTGCTCCTGTATCCTGGTGCTCCTGTGACCA-----CCAAAAGCATTTTTACAGAGGAATTTTgctctag----- i canFam3.chr10 I 4 C 0 s dasNov3.JH570235 121205 165 + 1056298 gcctcccccctcattca-ggcagagccaatcttggaagctctgtcccctcactgccattatctctctgacctcat-cccctaccactggctctgctctagt---------------cagcggtctcct--tgctcctggaatagg----ccaactgcttttctacttaggaactttgctctcccctgt i dasNov3.JH570235 C 0 I 1 e mm10.chr15 82857891 0 + 104043685 C e otoGar3.GL873526 36329592 731 - 42659167 I a score=435516.000000 s hg38.chr22_GL383582v2_alt 127498 43 + 162811 acgttcttctcccagagccagatagcttgctct-----------ccttccagtc s panTro5.chr22 28907441 43 + 37823149 acgttcttctcccagagccagatagcttgctct-----------ccttccagtc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41181991 43 + 50109623 acgttcttctcccagagccagatagcttgctct-----------ccttccagtc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204816 43 + 4464012 acgttcttctcccagagccagacagcttgctct-----------ccttccagtc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106700632 43 - 115148730 acgttcttctcccagagccagacagcttgctct-----------ccttccagtc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84317084 44 + 92844088 acattcttctcccaaagccagacagcttgctct-------c---ccttccagtc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87663447 44 - 96509753 acattcttctcccaaagccagacagcttgctct-------c---ccttccagtc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7160053 44 - 13098629 acattcttctcccaaagccagacagcttgctct-------c---ccttccagtc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119943 44 - 4483953 acattcttctcccaaagccagacagcttgctct-------c---ccttccagtc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24750251 40 + 33263144 acattcttctcccaaagc----cagcttgctct-------c---ccttccagtc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14031262 44 - 14338769 acattcttctcccaaagccagacagcttgctct-------c---ccttccagtc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 969538 44 + 1946073 acattcttctcccaaagccagacagcttgctct-------c---ccttccagtc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1996045 43 - 2117846 acgttcttctcccattgcaagacagcttgctct-----------ccctccagtc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8907174 43 - 16357246 acgttcttctcccattgcaaaacagcttgctct-----------ccctccagtc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1391433 43 - 1807191 acgttcttctcccattgcaagacagcttgctct-----------ccctccagtc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 70988 43 + 5963231 acattcttctcccattgcaagacagcttgctct-----------ccctccagtc i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46138259 41 - 69331447 ----------cccatagcaacatggtgtgcccctcttactt---ctttccagtc i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 121371 47 + 1056298 atgctctttgcccatagccatttggcttcctcc-------ctcaccttctAGTC i dasNov3.JH570235 I 1 I 10 e mm10.chr15 82857891 0 + 104043685 C e otoGar3.GL873526 36329592 731 - 42659167 I e proCoq1.NW_012136747v1 5125845 279 - 6317780 I e micMur3.chr7 5759582 278 + 108171978 I a score=2456591.000000 s hg38.chr22_GL383582v2_alt 127541 237 + 162811 tttgggcaagtgtca----------------ctcattccctggtcattctagtaaaaacagccagctccacaccttttccctggctg-taactccctcccctgtt---ttatcccctgcctggccccatacttactccaaac-agacacatatatgctacttttttactgtctgtctctcctctgactaaaatgtaaactccttaaagggcagaaactgactgttccttgctgtaatcctcaCGTCATCACACCGGA-G---- s panTro5.chr22 28907484 237 + 37823149 tttgggcaagtgtca----------------ctcattccctggtcattctagtaaaaacagccagctccacaccttttccctggctg-taactccctcccctgtt---ttatcccctgcctggccccgtacttactccaaac-agacacatatatgctacttgtttactgtctgtctctcctctgactaaaatgtaaactccttaaagggcagaaactgcctgttccttgctgtaatcctcaCGTCATCACACCGGA-G---- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41182034 237 + 50109623 tttgggcaagcgtca----------------ctcattccctggtcattctagtaaaaacagccagctccacaccttttccctggctg-taactccctcccctgtt---ttatcccctgcctggccccgtacttactccaaac-agacacatatatgctacttgtttactgtctgtctctcctctgactaaaatgtaaactccttaaagggcagaaactgcctgttccttgctgtaatcctcaCGTCATCACACCGGA-G---- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3204859 237 + 4464012 tttgggcaagtgtca----------------ctcattccctggtcattctagtaaaaacagcgagctccacaccttttccctggctg-taactccctcccctgtt---ttatcccctgcctggccccgtacttactccaaac-agacacatatatgctacttgtttactgtctgtctctcctctgactaaaatgtaaactccttaaagggcagaaactgcctgttccttgctgtaatcctcaCGTCATCACACCGGA-G---- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106700675 238 - 115148730 tttgggcaagtgtca----------------ctcatcccctggtcattctagtaaaaacagccagctccacacctcttccctggctg-taactccctcccctgtt---ttatcccctgcctggccccatacttactccaaac-agatacatatatgctacttgtttactgtctgtctctcctccgactaaaatgtaaactccttaaagggcagaaactgcctgttccttgctgtaatcctcaTGTCATCACACCGGAGG---- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84317128 238 + 92844088 tttgggcaagtatca----------------ctcattccctggtcattctagtaaaaacagctagctccacatcttttccctggctg-taactccctcccctgtt---ttatctcttgcctggccccgtacttactccaaacaagacacatatatgctacttgtttactgtctgtctctcccctgactaaaatgtaaactccataaagggcagagactgcctgttcctcgttgtaatcttcacgtcatcacatggga-g---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87663491 239 - 96509753 tttgggcaagtatca----------------ctcattccctggtcattctagtaaaaacagctagctccacatcttttccctggctgttaactccctcccctgat---ttatctcttgcctggcgccgtacttactccaaacaagacacatatatgctacttgtttactgtctgtctctcccctgactaaaatgtaaactccataaagggcagagactgcctgttcctcgttgtaatcttcacgtcatcacatggga-g---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7160097 238 - 13098629 tttgggcaagtatca----------------ctcattccctggtcattctagtaaaaacagctagctccacatcttttccctggctg-taactccctcccctgtt---ttatctcttgcctggccccgtacttactccaaacaagacacatatatgctacttgtttactgtctgtctctcccctgactaaaatgtaaactccataaagggcagagactgcctgttcctcgttgtaatcttcacgtcatcacatggga-g---- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4119987 238 - 4483953 tttgggcaagtatca----------------ctcattccctggtcattctagtaaaaacagctagctccacaccttttccctggctg-taactccctcccctgtt---ttatctcttgcctggccccgtacttactccaaacaagacacatatatgctacttgtttactgtctgtctctcccctgactaaaatgtaaactccataaagggcagagactgcctgttcctcgttgtaatcttcacgtcatcacatggga-g---- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24750291 238 + 33263144 tttgggcaagtatca----------------ctcattccctggtcattctagtaaaaacagctagctccacaccttttccctggctg-taactccctaccctgtt---ttatctcttgcctggccccgtacttactccaaacaagacacatatatgctacttgtttactgtctgtctctcccctgactaaaatgtaaactccataaagggcagagactgcctgttccttgttgtaatcttcacgtcatcacatggga-g---- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14031306 238 - 14338769 tttgggcaagtatca----------------ctcattccctggtcattctagtaaaaacagctagctccacaccttttccctggctg-taactccctcccctgtt---ttatctcttgcctggccccgtacttactccaaacaagacacatatatgctacttgtttactgtctgtctctcccctgactaaaatgtaaactccataaagggcagagactgcctgttcctcgttgtaatcttcacgtcatcacatggga-g---- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 969582 238 + 1946073 tttgggcaagtatca----------------ctcattccctggtcattctagtaaaaacagctagctccacaccttttccctggctg-taactccctcccctgtt---ttatctcctgcctggccccgtacttactccaaacaagacacatatatgctacttgtttactgtctgtctctcccccaactaaaatgtaaactccataaagggcagagactgcctgttccttgttgtaatcttcacgtcatcacatggga-g---- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1996088 237 - 2117846 tttgggcaaatgtca----------------ctcattccctggtcattctattaaaaacagctagttctacaccttttccctgcctc-caactccctcccctgtt---ttatcccctgcctggccctgtacttactccaaac-agacacataccagctacttgtttactgtctgtctccctccagactaaaatgtaaactccttaaagggcagagactgcctattccttgctgtaatcctcaCATCGCCACACGGCA-G---- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8907217 240 - 16357246 tttgggcaaatgtca----------------ctcattccctggtcattctattaaaaacagctagctctacaccttttccctgcctc-taactccctcccctgtttcatcatcccctgcctagccctgtactgattccaaac-agacacatacatgctacttgtttactgtctgtctctctccagactaaaatgtaaactccttaaagggcagagactgcctattccttgctgtaatcctcaCGTCACCACAGGGCA-G---- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1391476 237 - 1807191 tttgggcaaatgtca----------------ctcattctctggtcattctattaaaaacagctagctctataccttttccctgcctc-taactccctcccctgtt---tcatcccctgcctggctctgtacttattccaaac-agacacatacatgctacttgtttactgtctgtctctctccagactaaaatgtaaacttcttaaagggcagagactgcctattccttgctgtaatcctcaTGTCACCACACGGCA-G---- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 71031 237 + 5963231 tttgggcaaatgtca----------------ctcattccctgatcattctattaaaaacagctagctctacaccttttccctgcctc-caactccctcccctgtt---ttatcccctgcctggccctgtacttattccaaac-agacacatacatgctacttgtttactgtctgtctctctccagactaaaatgtaaactcctgaaagggcagagactgcctattccttgctgtaatcctcaCATCACCACACGGCA-G---- i aotNan1.NW_018512383v1 C 0 C 0 s canFam3.chr10 46138300 226 - 69331447 tctgggcaaatgtcaactgactggtaaggccttcctggccttaacatcctattaaaaatagctaactccacacctgaggctgggctt---------tccccatct---ccctccccagc----------acgttttcccaac-----actgataagttatttgtgta----ctgtctctcccccaactagaatgtaaacttcccaaagggaagagact--ttgcaccttgctgtaatcct---gtcactaaatggta-cagag i canFam3.chr10 C 0 C 0 e mm10.chr15 82857891 0 + 104043685 C e dasNov3.JH570235 121418 10 + 1056298 I e otoGar3.GL873526 36329592 731 - 42659167 I e proCoq1.NW_012136747v1 5125845 279 - 6317780 I e micMur3.chr7 5759582 278 + 108171978 I a score=1427665.000000 s hg38.chr22_GL383582v2_alt 127778 108 + 162811 ------------TCTGTGTGAATGATTAAATGGTGTAAGAACTAGGCCTT-AGAGAACTAGGCTAGAACTCACATATTCAGAGATGGTGCTGTGGGAGTGACATGAGAGAATTATAGAAAG s panTro5.chr22 28907721 108 + 37823149 ------------GCTGTGTGAATGATTAAATGGTGTAAGAACTAGGCCTT-AGAGAACTAGGCTAGAACTCACATATTCAGAGATGGTGCTGTGGGAGTGACATGAGAGAATTATAGAAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41182271 108 + 50109623 ------------GCTGTGTGAATGATTAAATGGTGTAAGAACTAGGCCTT-AGAGAACTAGGCTAGAACTCACATATTCAGAGATGGTGCTGTGGGAGTGACATGAGAGAATTATAGAAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3205096 108 + 4464012 ------------GCTGTGTGAACGATTAAATGGTGTAAGAATTAGGCCTT-AGAGAACTAGGCTATAACTCACCTATTCAGAGATGGTGCTGTGGGAGTGACATGAGAGAATTATAGAAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106700913 108 - 115148730 ------------GCTGTGTGAATGATTAAATGGTGTAAGAACTAGGCCTT-AGAGAACTAGGCTAGAACTCACATATTCAGAGATGGTGCTGTGGGAGTGACATGAGAGAATTATAGAAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84317366 108 + 92844088 ------------gcTGTGTGAATGATTAAACGGTGTAAGAACTAGGTCTT-AGAGAACTAGGCTAGAACTCACATATTCAGAGATGGTGCTGTGGGAGTGACATGACAGAATTGTAGAAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87663730 108 - 96509753 ------------gcTGTGTGAATGATTAAACGGTGTAAGAACTAGGTCTT-AGAGAACTAGGCTAGAACTCACATATTCAGAGATGGTGCTGTGGGAGTGACATGACAGAATTGTAGAAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7160335 108 - 13098629 ------------gcTGTGTGAATGATTAAACGGTGTAAGAACTAGGTCTT-AGAGAACTAGGCTAGAACTCACATATTCAGAGATGGTGCTGTGGGAGTGACATGACAGAATTGTATAAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4120225 108 - 4483953 ------------gcTGTGTGAATGATTAAACGGTGTAGGAACTAGGTCTT-AGAGAACTAGGCTAGAACTCACATATTCAGAGATGGTGCTGTGGGAGTGACATGACAGAATTGTAGAAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24750529 108 + 33263144 ------------gcTGTGTGAATGATTAAACGGTGTAAGAACTAGGTCTT-AGAGAACTAGGCTAGAACTCACATATTCAGAGATGGTGCTGTGGGAGTGACATGACAGAATTGTAGAAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14031544 108 - 14338769 ------------gcTGTGTGAATGATTAAACGGTGTAAGAACTAGGTCTT-AGAGAACTAGGCTAGAACTCACATATTCAGAGATGGTGCTGTGGGAGTGACATGACAGAATTGTAGAAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 969820 108 + 1946073 ------------gcTGTGTGAATGATTAAACGGTGTAAGAACTAGGTCTC-AGAGAACTAGGCTAGAACTCACATATTCAGAGATGGTGCTGGGGGAGTGACATGACAGAATTGTAGAAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1996325 109 - 2117846 ------------GCTGTGTGAATGAATAAACGGTGTAAGAACTAGGCCTTAAGAGAACTGGGCTAGAACTCACATATTCAGAGATGGTGCTGTGGGAGTGGCATGAGAGAACTGTAGAAAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8907457 109 - 16357246 ------------GCTGTGTGAATGAGTAAATGGTGTAAGAACTAGGCCTTAAGAAAACTGGGCTAGAACTCACATATTCAGAGATGGTGCTGTGGGAGTGACATGAGAGAATTGCAGAAAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1391713 109 - 1807191 ------------ACTGTGTGAATGAGTAAACGGTGTAAGAACTAGGCCTTAAGAGAATTGGGCTACAACTCACATATTCAGAGATGGTGCTGTGGGAGTGACATGAGGGAACTGCAGAAAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 71268 109 + 5963231 ------------GCTGTGTGAATGAGTAAACGGTGTAAGAACTAGGCCTTAAGAGAACTGGGCTAGAACTCACATATTCAGAGATGGTGCTGTGGGAGTGACATGAGAGAATTGTAGAAAT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5759860 103 + 108171978 ------------tcTGTGTGAATGATTAAATGATGTAAGAACTAAGCCTC-AGAGAACTAAACTAGAACTCACATATTCAGAGA-----CTGTGGTGGTAAGATCAGAGAACTGCAGGAAG i micMur3.chr7 I 278 C 0 s proCoq1.NW_012136747v1 5126124 103 - 6317780 ------------tcTGTGTGAATGATTAAATGGTATAAGAATTAAGCCTT-AGAGAACTAGGCTAGAACTCACATATTCAGAGA-----CTGTGGTGGTAAGATCAGAGAATTGCAAGAAG i proCoq1.NW_012136747v1 I 279 C 0 s canFam3.chr10 46138526 120 - 69331447 cacaaggcaggcattcTGTGAACCAATAAATGGTATAAGAACTAGGCTTT-AGAGAACTAGGCTAGAACGTACCTACTCAGAGGTGGTGGTGTGGCAGGGAGATGAGAGAGTTGCAGGAAG i canFam3.chr10 C 0 C 0 e mm10.chr15 82857891 0 + 104043685 C e dasNov3.JH570235 121418 10 + 1056298 I e otoGar3.GL873526 36329592 731 - 42659167 I a score=1645443.000000 s hg38.chr22_GL383582v2_alt 127886 118 + 162811 TG-AAAATAGAATATGATCAACCTAAAAGCAGAGCTGGAGGATGCTGAAGACCTTGCCTGTAAAATCCCATGAGTCCGGTTCT--AAGGG--AAAGACCCAGCTTGAG-TCCACATGAGAAC--T-G s panTro5.chr22 28907829 118 + 37823149 TG-AAAATAGAATATGATCAACCTAAAAGCAGAGCTGGAGGATGCTGAAGACCTTGCCTGTAAAATCCCATGAGTCCGGTTCT--AAGGG--AAAGACCCAGCTTGAG-TCCACATGAGAAC--T-G i panTro5.chr22 C 0 C 0 s panPan2.chr22 41182379 118 + 50109623 TG-AAAATAGAATATGATCAACCTAAAAGCAGAGCTGGAGGATGCTGAAGACCTTGCCTGTAAAATCCCATGAGTCCGGTTCT--AAGGG--AAAGACCCAGCTTGAG-TCCACATGAGAAC--T-G i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3205204 118 + 4464012 TG-AAAATAGAATATGATCAACCTAAAAGCAGAGCTGGAGGATGCTGAAGACCTTGCCTGTAAAATCCCCTGAGTCCGGTTCT--AAGGG--AAAGACCCAGCTTGAG-TCCACATGAGAAC--T-G i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106701021 120 - 115148730 TG-AAAATAGAATATGATCAACCTAAAAGCAGAGCTGGAGGATGCTGAAGACCTTGCCTGTAAAATCCCATGAGTCCAGTTCT--AAGGG--AAAGACCCAACTTGAG-TCCACATGAGAACTGT-G i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84317474 117 + 92844088 TG-AAAATAGAATATGATCAACCTAAAAGGAGAGTTGGAGGATGCTGGAGACCTTGCCTGTAAAATCCCATGGGTCCAGTTCT--AAGGG--AAAGACCCAGCTTGAG-TCCACACGAGAAC--T-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87663838 117 - 96509753 TG-AAAATAGAATATGATCAACCTAAAAGGAGAGTTGGAGGATGC-GGAGACCTTGCCTGTAAAATCCCATGGGTCCAGTTCT--AAGGG--AAAGACCCAGCTTGAG-TCCACACGAGAAC--TG- i macFas5.chr10 C 0 I 1 s macNem1.NW_012012688v1 7160443 118 - 13098629 TG-AAAATAGAATATGATCAACCTAAAAGGAGAGTTGGAGGATGCTGGAGGCCTTGCCTGTAAAATCCCATGGGTCCAGTTCT--AAGGG--AAAGACCCAGCTTGAG-TCCACACGAGAAC--TG- i macNem1.NW_012012688v1 C 0 I 333 s cerAty1.NW_011999588v1 4120333 117 - 4483953 TG-AAAATAGAATATGATCAACCTAAAAGCAGAGTTGGAGGATGCTGAAGACCTTGCCTGTAAAATCCCATGGGTCCAGTTCT--AAGGG--AAAGACCCAGCTTGAG-TCCACACGAGAAC--T-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24750637 117 + 33263144 TG-AAAATAGAATATGATCAACCTAAAAGCAGAGTTGGAGGATGCTGAAGACCTTGCCTGTAAAATCCCATGGGTCCAGTTCT--AAGGG--AAAGACCCAGCTTGAG-TCCACACGAGAAC--T-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14031652 117 - 14338769 TG-AAAATAGAATATGATCAACCTAAAAGCAGAGTTGGAGGATGCTGCAGACCTTGCCTGTAAAATCCCATGGGTCCAGTTCT--AAGGG--AAAGACCCAGCTTGAG-TCCACACGAGAAC--T-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 969928 117 + 1946073 TG-AAAACAGAATATGATCAACCTAGAAGCAGAGTTGGAGGATGGTGAAGACCTTGCCTGTAAAATCCCATGGGTCCAGTTCT--AAGGG--AAAGACCCAGCTTGAG-TCCACATGAGAAC--T-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1996434 118 - 2117846 TG-AAAATAGAGTATGATCAACCTAAAAGCAGAGTTGGAGGATGCTGAAGACCTCGCATGTCAAATCCTATGGGTTCAGTTCT--AAGGG--AGAGACCCAGCTTGAG-TCCACATGAGAAA--T-G i calJac3.chrUn_GL286373 C 0 I 3 s saiBol1.JH378157 8907566 118 - 16357246 TG-AAAATAGAGTATGATCAACCTAAAAGCAGAGCTGGAGGATGCTGAAGACCTCACCTGTAAAATCCTATGTGTCCAGTTCT--AAGGG--AGAGACCTAGCTTGAG-TCCACATGAGAAC--T-G i saiBol1.JH378157 C 0 I 2 s cebCap1.NW_016107750v1 1391822 118 - 1807191 TG-AAAATAGAGTATGATCAACCTAAAAGCGGAGCTGGAGGATGCTGAAGACCTCGTCTGTAAACTCCTATGGGTCCAGTTCT--AAGGG--AGAGACCCAGCTTGAG-TCCACATGAGAAC--T-G i cebCap1.NW_016107750v1 C 0 I 2 s aotNan1.NW_018512383v1 71377 103 + 5963231 TG-AAAATAGAGTATGATCAACCTAAAAGCAGAGCTGGAGGATGCTGAAGACCTCGCCTGTAAAATCCTATGGGTCCAGCTCT--AAGGG--AGAG----------------ACATGAGAAC--T-G i aotNan1.NW_018512383v1 C 0 I 2 s micMur3.chr7 5759963 121 + 108171978 AGAAAAACAGAGTATGATCAAGCTAAAAGCAGAGCTGGAGGATGCTGAAGACCTTGCCTGTAAAATCCTCAGGGTCTAGTTCT--AAGGG-AAAAGACCCAGCTTGGGTTCCACATGAGAAC--T-G i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5126227 119 - 6317780 AG-AAAACAGAATATGATTGAGCTAAAAGCAGAGCTGGAGGATGCTGAAGATCTTGCCTGTAAAATCCTCAGGGTCTAGTTCT--AAGGG-AAAAGACCCAGCTTGGG-TCCACATGAGAAC--T-G i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46138646 120 - 69331447 AG-AAAATAGAACATGATCGATCTAAAAGCAGAGCTGGAGGATGCTGAACACCCTGCCTGTAAAATCCTCCAGGCCCAGTTCC--AGGGGAAAAAAACCCAACTTGAG-TCCACACGAGAGC--C-G i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 121428 115 + 1056298 TG-AAAACAGAATATGAT----CTAAAAGCAGAGTTGGAGAATGCTGAAGACCTT-CCTGTACAACCCTTAGGGTCCAGTACCCAAGGGG--AAAAACCCAACTCAGG-TCCACATGAGAAC--T-G i dasNov3.JH570235 I 10 I 2 e mm10.chr15 82857891 0 + 104043685 C e otoGar3.GL873526 36329592 731 - 42659167 I a score=11930.000000 s hg38.chr22_GL383582v2_alt 128004 3 + 162811 AGG s panTro5.chr22 28907947 3 + 37823149 AGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41182497 3 + 50109623 AGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3205322 3 + 4464012 AGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106701141 3 - 115148730 AGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84317591 1 + 92844088 --G i rheMac8.chr10 C 0 I 1 s cerAty1.NW_011999588v1 4120450 1 - 4483953 --G i cerAty1.NW_011999588v1 C 0 I 1 s chlSab2.chr19 24750754 1 + 33263144 --G i chlSab2.chr19 C 0 I 1 s manLeu1.NW_012102031v1 14031769 1 - 14338769 --G i manLeu1.NW_012102031v1 C 0 I 1 s colAng1.NW_012115588v1 970045 1 + 1946073 --G i colAng1.NW_012115588v1 C 0 I 1 s calJac3.chrUn_GL286373 1996555 3 - 2117846 AGG i calJac3.chrUn_GL286373 I 3 C 0 s saiBol1.JH378157 8907686 3 - 16357246 AGA i saiBol1.JH378157 I 2 C 0 s cebCap1.NW_016107750v1 1391942 3 - 1807191 AGG i cebCap1.NW_016107750v1 I 2 C 0 s aotNan1.NW_018512383v1 71482 3 + 5963231 AGG i aotNan1.NW_018512383v1 I 2 C 0 s canFam3.chr10 46138766 2 - 69331447 -CG i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 121545 3 + 1056298 AGG i dasNov3.JH570235 I 2 C 0 e mm10.chr15 82857891 0 + 104043685 C e otoGar3.GL873526 36329592 731 - 42659167 I e proCoq1.NW_012136747v1 5126346 0 - 6317780 C e micMur3.chr7 5760084 0 + 108171978 C e macNem1.NW_012012688v1 7160561 333 - 13098629 I e macFas5.chr10 87663955 1 - 96509753 I a score=6041885.000000 s hg38.chr22_GL383582v2_alt 128007 474 + 162811 AAAGACTTCAGAAAGTAAATATTGATTAGAGCAGAAGATGGCCAGTAACCCCAAATTCTAAAAGCTTGACCCA---TATCT---TGAAATATCG-TAAGT---------CTAAAACAGCTAGACAAGGGTCTACTTCC------TTAAGCTTGATTATATAGTCATGTGACCC-AAAACAATCGCTAAACATTCATGTGCAAATAATGTCAGAATCTAAAGGA---AACTTCTCATCCTATTCAAAATGCCT---------------CTGTTGCTTTGTTCCAGTGAATCTGCA-GGGCAGTAGGTAA-TAGCTATTCAAATGG--------TGATGATGCtgcttgacactg-ttccagcacttcacatacact-aactcatttaatcctcacaaca----ctagcacgctccttttacagatgaggaaacagaag--cagagTTCACAAAGCTCCTAGGCAGCAGGGCTGGGGGC-----------------------AGGACATGTTTTTAACATTACATTGCCCAGAGGGTCTTCCACATGGTCAGTAAAAA s panTro5.chr22 28907950 477 + 37823149 AAAGACTTCAGAAAGTAAATATTGATTAGAGCAGAAGATGGCCAGTAACCCCAAATTCTAAAAGCTTGACCCA---TATCT---TGAAATATCG-TAAGT---------CTAAAACAGCTAGACAAGGGTCTACTTCC------TTAAGCTTGATTATATAGTCATGTGACCC-AAAACAATCACTAAACATTCATGTGCAAATAATGTCAGAATCTAAAGGAAACAACTTCTCATCCTATTCAAAATGCCT---------------CTGTTGCTTTGTTTCAGTGAATCTGCA-GGGCAGTAAGTAA-TAGCTATTCAAATGG--------TGATGACGAtgcttgacactg-ttccagcacttcacatacact-aactcatttaatcctcacaaca----ctagcacgctccttttacagatgaggaaacagaag--cagagTTCACAAAGCTCCTAGGCAGCAGGGCTGGGGGC-----------------------AGGACATGTTTTTAACATTACATTGCCCAGAGGGTCTTCCACATGGTCAGTAAAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41182500 477 + 50109623 AAAGACTTCAGAAAGTAAATATTGATTAGAGCAGAAGATGGCCAGTAACCCCAAATTCTAAAAGCTTGACCCA---TATCT---TGAAATATCG-TAAGT---------CTAAAACAGCTAGACAAGGGTCTACTTCC------TTAAGCTTGATTATATAGTCATGTGACCC-AAAACAATCACTAAACATTCATGTGCAAATAATGTCAGAATCTAAAGGAAACAACTTCTCATCCTATTCAAAATGCCT---------------CTGTTGCTTTGTTTCAGTGAATCTGCA-GGGCAGTAGGTAA-TAGCTATTCAAATGG--------TGATGACGAtgcttgacactg-ttccagcacttcacatacact-aactcatttaatcctcacaaca----ctagcacgctccttttacagatgaggaaacagaag--cagagTTCACAAAGCTCCTAGGCAGCAGGGCTGGGGGC-----------------------AGGACATGTTTTTAACATTACATTGCCCAGAGGGTCTTCTACATGGTCAGTAAAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3205325 472 + 4464012 AAAGACTTCAGAAAGTAAATATTGATTAGAGCAGAAGATGGCCAGTAACCCCAAATTCTAAAAGCTTGACCCA---TATCT---TGAAATATCG-TAAGT---------CTAAAACAGCTAGACAAGGGTCTACTTCC------TTAAGCTTGATTATATAGTCATGTGACCC-AAAACAATCACTAAACATTCATGTGCAAATAATGTCAGAATCTAAAGGAAACAACTTCTCATCCTATTCAAAATGCCT---------------CTGTTGCTTTGTTCCAGTGAATCTGCA-GGGCAGTAGGTAA-TAGCTATTCAAATAGCATTCAAATGATGACGAtgcttgacactg-ttccagcacttcacatacact-aactcatttaatcctcacaaca----ccagcacgctccttttacagatgaggaaa---------------cacaaagctcCTAGGCAGCAGGGCTGGGGGC-----------------------AGGCCATGTTCTTAACATTACATTGCCCAGAGGGTCTTCCACATGGTCAGTAAAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106701144 479 - 115148730 AAAGACTTCAGAAAGTAAATATGGATTAGAGTAGAAGATGGCCAGTAACCCCAACTTCTAAAAGCTTGACCCA---CATCT---TGAAATATCGTTAAGT---------CTGAAACAGCTAGACAAGGGTCTACTTCC------TTAAGCTTGATTATATAGTCATGTGACCC-AAAACAATCATTAAACATTCATGTGCAAATAATGTCAGAATCTAAAGGAAACAACTTCTCATCCTATTCAAAATGCCT---------------CTGTTGCTTTGTTCCAGTGAATCTGCA-GGGCAGTAGGTAA-TAGCTATTCAAATGG--------TGATGACGAtgcctgacactg-ttccagcacttcacatacactaaactcatttaatcctcacaaca----ccagcacgctcgttttacagatgaggaaacagaag--cagagTTCACAAAGCTCCTAGGCAGCAGGGCTGGGGGC-----------------------AGGCCATGTTCTTAACGTTACACTGCCCAGAGGGTCTTCCACATGGTCAGTAAAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84317593 476 + 92844088 TAAGACTTCAGAAAGTAAATATGGATTAGAGCAGAAAATGGCCAGTAACCCCAAATTCTAAAACCTTGACCCA---CATCT---TGAAATATCGTTAAGT---------CTAAAACAGCTAGACAAGGGTCTACCTCC------TTAAGTTTGATTATATAGTCATGTGACCC-AAAACCATCATTAAATATTCCTGTA-AAATAATGTCAGAATCTAAAGGAAACAACTTCTCATCCTATTCAAAATGCCT---------------CTGTTGCTTTGTTCCAATGAATCTGCA-GGGCAGTAGGTaa-tagctattcaaacgg--------tgatgatgatgcttgacactg-ttccagcacttcacatacact-aactcatttaatcctcacaaca----ctagcatgctcgttttacagatggggaaacagaag--cagagTTCACAAAGCTCCTAGGCAGCAGGGCC-GGGGC-----------------------AAGCCATGTTCTTAACATTACACTGCCCAGCGGGTCTTCCACACGGTCAGTAAAAG i rheMac8.chr10 I 1 C 0 s macFas5.chr10 87663956 477 - 96509753 TAAGACTTCAGAAAGTAAATATGGATTAGAGCAGAAAATGGCCAGTAACCCCAAATTCTAAAACCTTGACCCA---CATCT---TGAAATATCGTTAAGT---------CTAAAACAGCTAGACAAGGGTCTACCTCC------TTAAGTTTGATTATATAGTCATGTGACCC-AAAACCATCATTAAATATTCCTGTA-AAATAATGTCAGAATCTAAAGGAAACAACTTCTCATCCTATTCAAAATGCCT---------------CTGTTGCTTTGTTCCAATGAATCTGCA-GGGCAGTAGGTaa-tagttattcaaacgg--------tgatgataatgcttgacactg-ttccagcacttcacatacact-aactcatttaatcctcacaaca----ctagcatgctcgttttacagatggggaaacagaag--cagagTTCACAAAGCTCCTAGGCAGCAGGGCCGGGGGC-----------------------AAGCCATGTTCTTAACATTACACTGCCCAGCGGGTCTTCCACACGGTCAGTAAAAG i macFas5.chr10 I 1 C 0 s macNem1.NW_012012688v1 7160894 477 - 13098629 aaaGACTTCAGAAAGTAAATATGGATTAGAGCAGAAAATGGCCAGTAACCCCAAATTCTAAAACCTTGACCCA---CATCT---TGAAATATCGTTAAGT---------CTAAAACAGCTAGACAAGGGTCTACCTCC------TTAAGTTTGATTATATAGTCATGTGACCC-AAAACCATCATTAAATATTCCTGTA-AAATAATGTCAGAATCTAAAGGAAACAACTTCTCATCCTATTCAAAATGCCT---------------CTGTTGCTTTGTTCCAATGAATCTGCA-GGGCAGTAGGTaa-tagctattcaaacgg--------tgatgatgatgcttgacactg-ttccagcacttcacatacact-aactcatttaatcctcacaaca----ctagcatgctcgttttacagatggggaaacagaag--cagagTTCACAAAGCTCCTAGGCAGCAGGGCCGGGGGC-----------------------AAGCCATGTTCTTAACATTACACTGCCCAGCGGGTCTTCCACACGGTCAGTAAAAG i macNem1.NW_012012688v1 I 333 C 0 s cerAty1.NW_011999588v1 4120452 473 - 4483953 TAAGACTTCAGAAAGTAAATATGGATTAGAGCAGAAAATGGCCAGTAATCCCAAATTCTAAAACCTTGACCCA---CATCT---TGAAATATCGTTACGT---------CTAAAACAGCTAGACAAGGGTCTACCTC---------AAGTTTGATTATATAGTCATGTGACCC-AAAACCATCATTAAATATTCCTGTA-AAATAATGTCAGAATCTAAAGGAAACAACTTCTCATCCTATTCAAAATGCCT---------------CTGTTGCTTTGTTCCAATGAATCTGCA-GGGCAGTAGGTaa-tagctattcaaacgg--------tgatgatgatgcttgacactg-ttccagcacttcacatacact-aactcatttaatcctcacaaca----ctagcatgctcgttttacagatggggaaacagaag--cagagTTCACAAAGCTCCTAGGCAGCAGGGCC-GGGGC-----------------------AGGCCATGTTCTTAACATTACACTGCCCAGCGGGTCTTTCACACGGTCAGTAAAAG i cerAty1.NW_011999588v1 I 1 C 0 s chlSab2.chr19 24750756 477 + 33263144 TAAGACTTCAGAAAGTAAATATGGATTAGAGCAGAAAATGGCCAGTAACCCCAAATTCTAAAACCTTGACCCA---CATCT---TGAAATATCGTTAAGT---------CTAAAACAGCTAGACAAGGGTCTACCTCC------TTAAGTTTGATTATATAGTCATGTGACCC-AAAACCATCATTAAATATTCCTGTA-AAATAATGTCAGAATCTAAAGGAAACAACTTCTCATCCTATTCAAAATGCCT---------------CTGTTGCTTTGTTCCAATGAATCTGCA-GGGCAGTAGGTaa-tagctattcaaacgg--------tgatgatgatgcttgacactg-ttccagcacttcacatacact-aactcatttaatcctcacaaca----ctagcatgctcgttttacagatggggaaacagaag--cagagTTCACAAAGCTCCTAGGCAGCAGGGCCAGGGGC-----------------------AGGCCATGTTCTTAACATTACACTGCCCAGCGGGTCTTCCACACGGTCAGTAAAAG i chlSab2.chr19 I 1 C 0 s manLeu1.NW_012102031v1 14031771 477 - 14338769 TAAGACTTCAGAAAGTAAATATGGATTAGAGCAGAAAATGGCCAGTAACCCCAAATTCTAAAACCTTGACCCA---CATCT---TGAAATATCGTTAAGT---------CTAAAACAGCTAGACAAGGGTCTACCTCC------TTAAGTTTGATTATATAGTCATGTGACCC-AAAACCATCATTAAATATTCCTGTA-AAATAATGTCAGAATCTAAAGGAAACAACTTCTCATCCTATTCAAAATGCCT---------------CTGTTGCTTTGTTCCAATGAATCTGCA-GGGCAGTAGGTaa-tagctattcaaacgg--------tgatgatgatgcttgacactg-ttccagcacttcacatacact-aactcatttaatcctcacaaca----ctagcatgctcgttttacagatggggaaacagaag--cagagTTCACAAAGCTCCTAGGCAGCAGGGCCGGGGGC-----------------------AGGCCATGTTCTTAACATTACACTGCCCAGCGGGTCTTTCACACGGTCAGTAAAAG i manLeu1.NW_012102031v1 I 1 C 0 s colAng1.NW_012115588v1 970047 477 + 1946073 TAAGACTTCAGAAAGTAAATATGGATTAGAGCAGAAGATGGCCAGTAACCCCAAATTCTAAAACCTTGACCCA---CATCT---TGAAATATCGTTAAGT---------CTAAAACAGCTAGACAAGGGTCTACTTCC------TTAAGTTTGATTATATAGTCATGTGACCC-AAAACCATCATTAAATATTCCTGTA-AAATAATGTCAGAATCTAAAGGAAACAACTTCTCATCCTATTCAAAATGCCT---------------CTGTTGCTTTGTTCCAATGAATCTGCA-GGGCAGTAGGTaa-tagctattcaaacgg--------tgatgatgatgcttgacactc-ttccagcacttcacatacact-aactcatttaatcctcacaaca----ctagcatgctcgttttacagatggggaaacagaag--cagagTTCACAAAGCTCCTAGGCAGCAGGGCCGGGGGC-----------------------AGGCCATGTTATTAACATTACACTGCCCAGCGGGTCTTCCACATGGTCAGTAAAAG i colAng1.NW_012115588v1 I 1 C 0 s calJac3.chrUn_GL286373 1996558 489 - 2117846 AAAGACTTCAGAAAGTAAATATGGATTAGAGCAGAAGATGGCCAGTAACTCCAAATTCTAAAAGCCTGACCCA---CATCT---TGAAATATCT-TAGGT---------CTAAAACAGCTAGACAAGGATCCACTTCC------TTAAGTTTGA-AATACTGTCATATGACCC-AAAACCATCATTAAACATTCACATACAAATAATGTCACAATCTAAAGGAAATCAATTCTCATCCTAATCAAAACGCCTCTG-CAACAGACAG-CTGTTGCTTTGTGCCAATGAATCTGCT-GGGCAGTAGGAAA-TAGCTGTTCAAATGG--------TGATGATGACATTTgacactg-ttacagtacttcacacacact-cactcatttaatcctcacaaca----ctaacatgatcgtttcacagatgaggaaacagaag--cagagTTCACAAAGCTCCTAAGCAGCAGGGCTGAGCAC-----------------------AGGCCATGTTCTTAACATTACACTGCCCAGAGGGTCTTCCATACGGTCAGTAAAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8907689 498 - 16357246 AAAGACTTCAGAAAGTAAATACGGATTAGAGCGGAAGATGGCCAGTAACTCCAAATTCAAAAAGCCTGACCCA---CATCT---TGAAATATCT-TAGGTCTAAAACAGCTAAAACAGCTAGACAAGGGTCTACTTCC------ATAAGTTTGA-AATACAGTCATATGACCC-AAAACCATCATTAAGCATTCATGTACAAATAATGTCACAATCTAAGGGAAATCACTTCTCATCCTATTCAAAATGCCTCTG-CAACAGACAG-CTGTTGCTTTGTGCCAATGAATCTGCT-GGGCAGTAGGTAA-TAGCTGTTCAAATGG--------TGATGATGACATTTgacactg-ttccagcatttcgcacaaact-aactcatttaatcctcacaaca----ctaacacgatcgtttcacagatgaggaaacagaag--cagagTTCACAAAGCTCCTAAGCAGCAAGGCTGAGCAC-----------------------AGGCCATGTTCTTAACATTACAATGCCCAGAGGGTCTTCCATACGGTCAGTAAAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1391945 489 - 1807191 AAAGACTTCAGAAAGTAAATATGGATTAGAGCAGAAGATGGCCAGTAACTCCAAATTTTAAAAGCCTGACCCA---CATCT---TGAAATATCT-TAGGT---------CTAAAACAGCTAGACAAGGGTCTACTTCC------TTAAATTTGA-AATACAGTCATATGACCC-AAAACCATCATTAAACATTCATGTACAAATAATGTCACAATCTAAAGGAAATCGCTTCTCATCCTATTCAAAATGCCTCTG-CAACAGACAG-CTGTTGCTTTGTGCCAATGAATCTGCT-GGGCAGTAGGTAA-TAGCTGTTCAAATGG--------CGATGATGACATTTgacactg-ttccagcacttcacacacact-aactcatttaatctttacaaca----ctaacacgatcgtttcacagatgaggaaacagaag--cagagTTCACAAAGCTCCTAAGCAGCAGGGCTGAGCAC-----------------------AGGCCATGTTCTTAACATTACACTGCCCAGAGGGTCTTCCATACGGTCAGTAAAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 71485 485 + 5963231 AAAGACTTCAGAAAGTAAATATGGATTAGAGCAGAAGATGGCCAGTAACTCCAAATTCTAAAAGCCTGACCCA---CATCT---TGAAATATCT-CAGGT---------CTAAAACACCTAGACAAAGGTCCACTTCC------TTAAGTTTGA-AATACAGTCATATGACCCAAAAACCATCATTAAACATTCATGTACAAATAATGTCACAATCTAAAGGAAATCACTTCTCATCCT-----AAATGCCTCCG-CAACAGACAG-CTGTTGCTTTGTGCCAATGAATCTCCT-GGGCAGTAGGTAA-TAGCTGTTCAAATGG--------TGATGATGACATTTgacactg-ttccagcacttcacacacact-aactcatttaatcctcacaaca----ctaacatgatcgtttcacagatgaggaaacagaag--cagagTTCACAAAGCTCCTAAGCAGCGGGGCTGAGCAC-----------------------AGGCCATGTTCTTAACATTACACTGCCCAGAGGGTCTTCCATACAGTCAGTAAAAG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5760084 502 + 108171978 --TGACTTCAGAAAGTAAACATGGATCATAGCAGAAGATG----GTAATCCCAAATTCTGCAAACTTGACCCA---CTTCT---TGAGATATCT-TAAGT---------CTAAAATAGCTAGACAAGAGTCTATTTTTTTGATATTAAATTTGATTAT--AGTCACATGACCC-AAAGCCATC-TTAAACATTCACATATATATAATGTGAAAATCTAAAGGAAACTGCTTCTCCTCCTATTCAAAAAGCCTCTG-TAACAGACTG-TTATTTCTGTGTTCCAATGACTCTGTT-GGGCAACAGGTAA-TAGCTATTTAAATAt--------t----acaatgcatgacactg-ttctagcacttgacatgcact-aactcatttaatcctcacaata----ctaacatcctcattttacagatgaggaaatggagg--cagagTTCACAATGCTCCTATGCAGCAGGGCCAAGGGCCCAGCATGG----CCACCCCCATGGGCCATGTTCTTAACATCAGACTGCTCAGAGGCTCTTCTACACAGTCAGTACAGA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5126346 507 - 6317780 --TGACTTCAGAAAGTAAACATGGATCACAGTAGAAGATG----GTAATCTCAAACTCTGAAAGCTTGACCCACTTCTTCT---TGAGATATCT-TAAGT---------CTAAAACAGCTAAACAAGAGTCTACTTCTTTGATATTAAATCTGATTATACAGTCACATGACCC-AAAGCCATC-TTAAATATTCACATATAAATAATGTGAAAATCTAAAGGAAATCGCTTCTACTCCTATTCAAAACGCCTCTG-CAACAGACTA-TTATTTCTGTGTTCCAATGACTCTGTT-GGGCAACAGGTAA-TAGCTATTTAAATAt--------t----acaatgcatgacacta-ttctagcgcttgacatgcact-aactcatttaatcttcacaaca----ctaacatcctcattttacagatgaggaaatggaag--cagagTTCACAATGCTCCTAAGCAGCGGGGACAAGGGCCCAGCATGG----CCACCCCAACGGGCCATGTTCTTAACGTTAGACTGCTCAGAGGATCTTCCACATAGTTAGTACAGA i proCoq1.NW_012136747v1 C 0 I 65 s canFam3.chr10 46138769 485 - 69331447 GGAGGCTTTGGAGAGTAAACGTGGGTCATGGTTGAAGATGGTCAGTAACTCCAAACTCAGAAAGCC-GCCCCA---CTTCTTCCTGAAATATCT-TCAGT---------CTAAAATAGCTAGACAAGAGACTACTACTTTGATACTAAGTTTGATTATATAATCACATGACCC-AAAGTCATCTTTAAACATTCAAGTACAAATAATCTCAGAATCTAAAGGAAACTGCTTCTCATCATCTTCAAAATGCCTCTGCCAACAGACTGCTCTTTTCTGTGTTCCAGTGACTCTGCC-GGGCAACAGACAA-TGGC-------------------TTACTGTAGTGCCTGGGACAG-GACCAGCCCTCCGCACACACT-GTCAC---TAGCCCTCACAGCA----CGGATATCCTGGTTTTACAGACAAGGACACCAAAGCACAGAACTCACAGGGCTCCTGAGCAGCAGGCCC--CCTC-----------------------AGGCCATGTACCTCATACCACACT-CCCAGAGGATCCAGGATGCAGTCAGTGACAG i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 121548 453 + 1056298 AAAGATTTCAGAGAATAAACACGGGTCACAATGGAAGACGGTGAGTAACCCTAAA------------------------CT---T----------TAAGT---------TCA-------------------------C------TTAG----------AGAGTCACAAGACCC-AAAGCCATCTTTAAACATTCAAGTACAAATAATCTCAGAATCTAAAGAAGAGTGCTTCTTACCCC--TCAAAATGCCTCTA-CCACAGAC---CATTTTCTTTGCTCTAATGAATCTGCTGGGGCAACAGataactagctatccaagtgc--------tgattataacacctgatattgtttccagcactttacatgcatc-aactcatttaatcctcaaaacaacatcaattatcctcattttacagaccaggaaaccaaaacacagagttgatgcagttcctgagcagcagggctgagggccaagcttggcagcctgcctcTGCAGGCTAAGTTGTGAATACTCCCCGACCCAGAGGCTCTACGGCCCAGTAGGTTGACA i dasNov3.JH570235 C 0 I 3 e mm10.chr15 82857891 0 + 104043685 C e otoGar3.GL873526 36329592 731 - 42659167 I a score=468529.000000 s hg38.chr22_GL383582v2_alt 128481 39 + 162811 ATACCAGTTGTCCTGTCA--GTTTGGCCTT-GAAAGTGGGTA s panTro5.chr22 28908427 39 + 37823149 ATGCCAGTTGTCCTGTCA--GTTTGGCCTT-GAAAGTGGGTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41182977 39 + 50109623 ATGCCAGTTGTCCTGTCA--GTTTGGCCTT-GAAAGTGGGTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3205797 39 + 4464012 ATGCCAGTTGTCCTGTCA--GTTTGGCCTT-GAAAGTGGGTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106701623 39 - 115148730 ATGCCAGTTGTCCTGTCA--GTTCGGCCTT-GAAAGTGGGTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318069 40 + 92844088 ATGCCAGTTGTCCTGTCA--GGTCGGCCTTCGAAAGTGGGTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87664433 40 - 96509753 ATGCCAGTTGTCCTGTCA--GGTCGGCCTTCGAAAGTGGGTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7161371 40 - 13098629 ATGCCAGTTGTCCTGTCA--GGTCGGCCTTCGAAAGTGGGTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4120925 40 - 4483953 ATGCCAGTTGTCCTGTCA--GGTCGGCCTTCGAAAGTGGGTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751233 40 + 33263144 ATGCCAGTTGTCCTGTCA--GGTCGGCCTTCGAAAGTGGGTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14032248 40 - 14338769 ATGCCAGTTGTCCTGTCA--GGTCGGCCTTCGAAAGTGGGTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 970524 40 + 1946073 ATGCCAGTTGTCCTGTCA--GGTCGGCCTTCGAAAGTGGGTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997047 39 - 2117846 ATGCCAGTTGTCCTGTGA--GGTTGGCCTT-GAAAGTGGGTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908187 39 - 16357246 ATGCCAGTTGTCCTGTCA--GGTTGGCCTT-GAAAGTGGGTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1392434 39 - 1807191 GTGCCAGTTGTCCTGTCA--GGTTGGCCTT-GAAAGTGGGTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 71970 39 + 5963231 ATGCCAGTTGTCCTGTCA--GGTTGGCCTT-GAAAGTGGGTA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5760586 40 + 108171978 -TGCCACTTGTCCCACCAATGGTGGGCCTT-GAAAGCACGTG i micMur3.chr7 C 0 C 0 s canFam3.chr10 46139254 41 - 69331447 CTGCCACCTGTCCTGTCAGAGGTCAGCCTT-GAAAGTAGGTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 122004 38 + 1056298 GCGACACTCATCCTGCCAGAGGTCAGCCTT-GCAAGTGG--- i dasNov3.JH570235 I 3 C 0 e mm10.chr15 82857891 0 + 104043685 C e otoGar3.GL873526 36329592 731 - 42659167 I e proCoq1.NW_012136747v1 5126853 65 - 6317780 I a score=203544.000000 s hg38.chr22_GL383582v2_alt 128520 19 + 162811 ----GCCACCCACAA---TAAATCTG s panTro5.chr22 28908466 19 + 37823149 ----GCCACCCACAA---TAAATCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183016 19 + 50109623 ----GCCACCCACAA---TAAATCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3205836 19 + 4464012 ----GCCACCCAAAA---TAAATCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106701662 19 - 115148730 ----GCCACCCACAA---TAAATCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318109 19 + 92844088 ----GTCACCCACAA---TAAATCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87664473 19 - 96509753 ----GTCACCCACAA---TAAATCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7161411 19 - 13098629 ----GTCACCCACAA---TAAATCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4120965 19 - 4483953 ----GTCACCCACAA---TAAATCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751273 19 + 33263144 ----GTCACCCACAA---TAAATCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14032288 19 - 14338769 ----GTCACCCACAA---TAAATCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 970564 19 + 1946073 ----GTCACCCACAA---TAAATCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997086 19 - 2117846 ----GCCAACCACAA---TAAATCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908226 19 - 16357246 ----GCCAATCACAA---TAAATCTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1392473 19 - 1807191 ----GCCACCCACAA---TAAATCTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 72009 19 + 5963231 ----GCGAACCACAA---TAAATCTG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5760626 19 + 108171978 ----GCCACCAACAA---TACTTCTG i micMur3.chr7 C 0 I 6 s otoGar3.GL873526 36330323 19 - 42659167 ----GCTACCAGCAA---TACTTTTA i otoGar3.GL873526 I 731 I 6 s canFam3.chr10 46139295 22 - 69331447 ----GCCACCAACACTTTTCAGTGTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 122042 12 + 1056298 CTTCCTCACCTA-------------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857891 0 + 104043685 C e proCoq1.NW_012136747v1 5126853 65 - 6317780 I a score=1242404.000000 s hg38.chr22_GL383582v2_alt 128539 99 + 162811 TCCCTTCACTGCCACCCTCTTATAAGGACCTCCATACTGTTCCAGCTGGCTCTTCAC--CCCCTCCCCATCATTCTTAGAACTATCAAGAGCAATTCTGTC s panTro5.chr22 28908485 99 + 37823149 TCCCTTCACTGCCACCCTCTCATAAGGACCTCCATACTGTTCCAGCTGGCTCTTCAC--CCCCTCCCCATCATTCTTAGAACTATCAAGAGCAATTCTGTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183035 99 + 50109623 TCCCTTCACTGCCACCCTCTCATAAGGACCTCCATACTGTTCCAGCTGGCTCTTCAC--CCCCTCCCCATCATTCTTAGAACTATCAAGAGCAATTCTGTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3205855 99 + 4464012 TCCCTTCACTGCCACCCTCTCATAAGGACCTCCATACTGTTCCAGCTGGCTCTTCAC--CCCCTCCCCATCATTCTTAGAACTATCAAGAGCAATTCTGTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106701681 101 - 115148730 TCCCTTCACTGCCACCCTCTCATAAGGACCTCCATACTGTTCCAGCTGGCTCTTCACCTCCCTCCCCCATCATTCTTACAACTATCAAGAGCAATTCTGTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318128 97 + 92844088 TCCCTTCACTGCCGCCCTCTCACAAGGACCTCCATACTGTTCCAGCTGGCTCTTTAC--CTC--CCCCATCATTCTCAGAACTATCAAGAGCAATTCTGTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87664492 97 - 96509753 TCCCTTCACTGCCGCCCTCTCACAAGGACCTCCATACTGTTCCAGCTGGCTCTTTAC--CTC--CCCCATCATTCTCAGAACTATCAAGAGCAATTCTGTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7161430 97 - 13098629 TCCCTTCACTGCCGCCCTCTCACAAGGACCTCCATACTGTTCCAGCTGGCTCTTTAC--CTC--CCCCATCATTCTCAGAACTATCAAGAGCAATTCTGTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4120984 97 - 4483953 TCCCTTCACTGCCGCCCTCTCACAAGGACCTCCATACTGTTCCAGCTGGCTCTTTAC--CTC--CCCCATCATTCTCAGAACTATCAAGAGCAATTCTGTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751292 97 + 33263144 TCCCTTCACTGCCGCCCTCTCACAAGGACCTCCATACGGTTCCAGCTGGCTCTTTAC--CTC--CCCCATCATTCTTAGAACTATCAAGAGCAATTCTGTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14032307 97 - 14338769 TCCCTTCACTGCCGCCCTCTCACAAGGACCTCCATACTGTTCCAGCTGGCTCTTTAC--CTC--CCCCATCATTCTCAGAACTATCAAGAGCAATTCTGTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 970583 97 + 1946073 TCCCTTCACTGCCGCCCTCTCACAAGGACCTCCATACTGTTCCAGCTGGCTCTTTAC--CTC--CCCCATCATTCTTAGAACTATCAAGAGCAATTCTGTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997105 97 - 2117846 TCCCTTCACCCCTGCCCTCTCATAAGGACCTCCATACTGTTACAACTGGCTTCTCAC--CTC--CCCCATCATTCTTAGGACTAACAAGAGCAATTTTGTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908245 97 - 16357246 TCCCTTCACCACTGCCCTCTCATAAGGACCTCCATACTGTTCCAACTGACTTCTCAC--CTC--CCCCATCATTCTTAAGACTATCAAGAGCAATTTTGTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1392492 97 - 1807191 TCCCTTCACCACTGCCCTCTCATAAGGGCCTCCATACTGTTCCAACTGGCTTCTCAC--CTC--CCCCATCATTCTTAGGACTATCAAGAGCAATTTTGTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 72028 97 + 5963231 TCCCTTCACCACTGCCCTCTCATAAGGACCTCCATACTGTTCCAACTGGCTTCTCAC--CTC--CCCCATCATTCTTAGGACTATCAAGAGCAATTTTGTC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5760651 88 + 108171978 TCCCTTCTCTGCTGCCCTCTCACAAGAATTTCCATGCTGTTCCAGCTGGTT-------------CTTCATCATTTCTAGGACTCTGAAGAACAATTCTGTC i micMur3.chr7 I 6 I 9 s proCoq1.NW_012136747v1 5126918 88 - 6317780 TCCCTTCTCTGTTGCCCTCTCACAAGAACCTCCATGCTGTTCCGGCTGGTT-------------CTTCATCATTTCTAGGACTCTGAAGAACAATTCTGTC i proCoq1.NW_012136747v1 I 65 I 9 s otoGar3.GL873526 36330348 97 - 42659167 GCCCCTCTCTGTGGCCCTCTCACAAGAACCTTCACACTGTTCCAGCTGGTTCTTCAC--CTC--CTTCATCATTTCTAAGGTTTTTAAGAACAACTGTACC i otoGar3.GL873526 I 6 C 0 s canFam3.chr10 46139317 67 - 69331447 TCCTTTCTCTGCCTCCC-CTCACAAGGAC------------------------------CTC--CCTCAGTATTTCCAGAACCGCCGAAAGC-ATTGTGCC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 122054 62 + 1056298 TTCCCCTTCCCCAATTCTCTCACAAGTCACCCCACTCTGTCC---CTAGATCT------CTCATCCCAATC------------------------------ i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857891 0 + 104043685 C a score=125093.000000 s hg38.chr22_GL383582v2_alt 128638 13 + 162811 TACATGAGTATTA s panTro5.chr22 28908584 13 + 37823149 TACACGAGTATTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183134 13 + 50109623 TACACGAGTATTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3205954 13 + 4464012 TACACGAGTATTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106701782 13 - 115148730 TACACAAGTATTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318225 13 + 92844088 TACACGAGTATTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87664589 13 - 96509753 TACACGAGTATTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7161527 13 - 13098629 TACACGAGTATTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4121081 13 - 4483953 TACACGAGTATTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751389 13 + 33263144 TACACGAGTATTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14032404 13 - 14338769 TACATGAGTATTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 970680 13 + 1946073 TACATGAGTATTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997202 13 - 2117846 TACATCAGTATTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908342 13 - 16357246 TACATAAGTATTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1392589 13 - 1807191 TACATAAGTATTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 72125 13 + 5963231 TACATCAGTATTA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36330445 9 - 42659167 CACACATGC---- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46139384 10 - 69331447 CACACAAGTA--- i canFam3.chr10 C 0 C 0 e mm10.chr15 82857891 0 + 104043685 C e dasNov3.JH570235 122116 0 + 1056298 C e proCoq1.NW_012136747v1 5127006 9 - 6317780 I e micMur3.chr7 5760739 9 + 108171978 I a score=1716473.000000 s hg38.chr22_GL383582v2_alt 128651 124 + 162811 A---TTTTTTCCCCTTGTGATGTGC----TCCTGCTCTACTCCTCAGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAAC-AAAAACATTAAAGCTAGCAGTTTAAACTAATG s panTro5.chr22 28908597 124 + 37823149 A---TTTTTTCCCCTTGTGATGTGC----TCCTGCTCTACTCCTCAGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAAC-AGAAACATTAAAGCTAGCAGTTTAAACTAATG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183147 124 + 50109623 A---TTTTTTCCCCTTGTGATGTGC----TCCTGCTCTACTCCTAAGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAAC-AGAAACATTAAAGCTAGCAGTTTAAACTAATG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3205967 124 + 4464012 A---TTTTTTCTCCTTGTGATGTGC----TCCTGCTCTATTCCTCAGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAAC-AAAAACATTAAAGCTAGCAGTTTAAACTAATG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106701795 124 - 115148730 A---TTTTTTCTCCTTGTGATGTGC----TCCTGCTCTACTCCTCAGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAAC-AAAAACATTAAAGCTAGCAGTTTAAACTAATG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318238 121 + 92844088 A---TTTTTTCTGCTTGTGATGTGC----TCCTGCTCTACTC---AGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAAC-AAAAACATTAAAGCTAGCAGTTTAAACTAATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87664602 121 - 96509753 A---TTTTTTCTGCTTGTGATGTGC----TCCTGCTCTACTC---AGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAAC-AAAAACATTAAAGCTAGCAGTTTAAACTAATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7161540 121 - 13098629 A---TTTTTTCTGCTTGTGATGTGC----TCCTGCTCTACTC---AGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAAC-AAAAACATTAAAGCTAGCAGTTTAAACTAATG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4121094 121 - 4483953 A---TTTTTTCTGCTTGTGATGTGC----TCCTGCTCTACTC---AGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAACTGAAC-AAAAACATTAAAGCTAGCAGTTTAAACTAATG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751402 121 + 33263144 A---TTTTTTCTGCTTGTGATGTGC----TCCTGCTCTACTC---AGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAACTGAAC-AAAAACATTAAAGCTAGCAGTTTAAACTAATG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14032417 121 - 14338769 A---TTTTTTCTGCTTGTGATGTGC----TCCTGCTCTACTC---AGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAAC-AAAAACATTAAAGCTAGCAGTTTAAACTAATG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 970693 121 + 1946073 A---TTTTTTCTGCTTGTGATGTGC----TCCTGCTCTACTC---AGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAAC-AAAAACATTAAAGTTAGCAGTTTAAACTAATG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997215 130 - 2117846 ATATTTTTTTCTGCCTGTGATGTGC----TCCTGCTCTACTCCTCAGTGCCAGTGGCCTTCTCTAAATGATAAAACAAGGCTGA-ATGGGGGCTAAATTGAAC-AAAAACATTAAAACTGGCAGTTTAAACTAATG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908355 130 - 16357246 ATATTTTTTTCTGTCTGTGATGTGC----TCCTGCTCTACTCCTCAGTGCCAGTGGCCTTCTCTAAATGATAAAACAAGGCTGA-ATGGGGGCTAAATTGAAC-AAAAACATTAAAGCTGGCAGTTTAAACTAATG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1392602 130 - 1807191 ATAATTTTTTCTGCCTGTGATGTGC----TCCTGCTCTACTCCTCAGTGCCAGTGGCCTTCTCTAAATGATAAAACAAGGCTGA-ATGGGGGCTAAATTGAAC-AAAAACATTAAAGCTGGCAGTTTAAACTAATG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 72138 129 + 5963231 ATATTTTTTTCTGCCTGTGATGTGC----TCCTGCTCTACTCCTCAGTGCCAGTGACCTTCTCTAAATGATAAAACAAGGCTGA-ATGGGGGC-AAATTGAAC-AAAAACATTAAAGCTGGCAGTTTAAACTAATG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5760748 128 + 108171978 A---TTTTTCCTGTTTGTGATGTGC----TTCTACTCTAGTTCTTGGTGTCAATGGCCTTCTCCAGATGATAAAACAAGGCTGA-ATGGGGGCTAAATTAAATAAAAAACACTAAATCTGGCAGTTTAAACTAATG i micMur3.chr7 I 9 C 0 s proCoq1.NW_012136747v1 5127015 127 - 6317780 A---TTTTTCCTGTTTGTGATGTGC----TTCTACTCTAGTTCTTGGTGTCAATGGCCTTCTCCAGATGATAAAACAA-GCTGA-ATGGGGGCTAAATTAAACAAAAAACACTAAATCTGGCAGTTTAAACTAATG i proCoq1.NW_012136747v1 I 9 C 0 s otoGar3.GL873526 36330454 129 - 42659167 A---TGTTTCTAGTTTGTGACGTGCTTCTTTCTACTCTAGTTCTCCATGCTAGCAGCCTTCTCCAGATG--AAAACAAGGCAGA-ATGGGGGCTAAAGTGAAC-AAAAACACTAAATCTGGCAGTTTAAACTAATG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46139394 108 - 69331447 -------TCTCTATTTGTGGTGTGC----CTCTATCCTGGCTCTTGGTGCCAGTGGCTTTCT---------AGAAGGTGCCTGAGATGGGTG--ACAGTGGAC-AGAAAGACTACATCTGGAAGTT-----TAATG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 122116 100 + 1056298 --------------------TCTGT----TCTAGTTCTTCTT---CAAGTCAGTGGCCTTCTCTA---GATCATAGAAAACC-A-ATGAGG--TAAACTGAAC-AAAAAGACTA-ATCTAGCAGTTTAATCAAAAG i dasNov3.JH570235 C 0 I 411 e mm10.chr15 82857891 0 + 104043685 C a score=2102847.000000 s hg38.chr22_GL383582v2_alt 128775 131 + 162811 AAAAGCCTTCTCAAGAGATA--TTCTC----TAT-AAAAAGCTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCTT s panTro5.chr22 28908721 131 + 37823149 AAAAGCCTTCTCAAGAGATA--TTCTC----TAT-AAAAAGCTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183271 131 + 50109623 AAAAGCCTTCTCAAGAGATA--TTCTC----TAT-AAAAAGCTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206091 131 + 4464012 AAAAGCCTTCTCAAGAGATA--TTCTC----TAT-AAAAAGCTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106701919 131 - 115148730 AAAACCCTTCTCAAGAGATA--TTCTC----TAT-AAAAAGCTGTGTTACACGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318359 131 + 92844088 AAAAGTTTTCTCAAGAGATA--TTCTC----TAT-AAAAAACTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87664723 131 - 96509753 AAAAGTTTTCTCAAGAGATA--TTCTC----TAT-AAAAAACTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7161661 131 - 13098629 AAAAGTTTTCTCAAGAGATA--TTCTC----TAT-AAAAAACTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4121215 129 - 4483953 AAAAGTTTTCTCAAGAGATA----CTC----TAT-AAAAAACTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751523 131 + 33263144 AAAAGTTTTCTCAAGAGATA--TTCTC----TAT-AAAAACCTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14032538 131 - 14338769 AAAAGTTTTCTCAAGAGATA--TTCTC----TAT-AAAAAACTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 970814 131 + 1946073 AAAAGTTTTCTCAAGAGATA--TTCTC----TAT-AAAAAACTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997345 131 - 2117846 AAAAGCTTTCTCAAGAGATG--CTATC----TAT-AATAAACTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAACCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGTCCCATATTCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908485 132 - 16357246 AAAAGCTTTCTCAAGAGATA--CTATC----TATAAAAAAACTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAACCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1392732 131 - 1807191 AAAAGCTTTCTCAAGAGATA--CTATC----TAT-AAAAAACTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAACCGGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 72267 131 + 5963231 AAAAGCTTTCTCAAGAGATA--CTATC----TAT-AAAAAACTGTGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAACCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCA-CTTGCTCCATATTCCT i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5760876 125 + 108171978 AAAAGCTTCCTCAAGAGATG--CTCTCTC--TAT-AAATAAATACTTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCC--------TCTGCGTGTATAAACAATGCTGCCG-CTTGTACCATATTTTT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5127142 125 - 6317780 AAAAGCTTCCTCAAGAGATG--CTCTCTC--TAT-AAATAAATACTTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCT--------TCTGAGTGTATAAACAATGCTGCTG-CTTGTACCATATTTTT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36330583 127 - 42659167 AAAAGCTTCCTCAGGAGATG--CTCTCTCTATAT-AAATAAATACTTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCT--------TCTGAGTGGATAAACAGTGTTGCCA-CTTGTTCCATATTTTT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46139502 133 - 69331447 AAAAGCTTTCTCAAGAGATGACCTCTC----CCC-AAGTAAGTATTTTACATGTTGTTTAATTAATCATTCTGTAAACAAAATCAGGCTTCTGAAAACCTGTGTATATAAACAATTTTGTCA-CTTGCTGCAAATTTTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 122627 133 + 1056298 AAAAGGTTCCTCAAGAGACAATTTCTC----TAT-AAATATATACTTTACATGTTGTTTAGTTAATCCTTCTGTAAATAAAACCAGG-TTCTGAAGATTTGAGTATATAAACAACGTTGCCACCTTGCTCAACATTTTC i dasNov3.JH570235 I 411 C 0 e mm10.chr15 82857891 0 + 104043685 C a score=553827.000000 s hg38.chr22_GL383582v2_alt 128906 33 + 162811 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAC s panTro5.chr22 28908852 33 + 37823149 CCTAAATAGGAGCCACCAAGAGCTAAAGGCTAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183402 33 + 50109623 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206222 33 + 4464012 CCTAAATAGGAGCCACCAAAAGCTAAAGGCCAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702050 33 - 115148730 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318490 33 + 92844088 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87664854 33 - 96509753 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7161792 33 - 13098629 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4121344 33 - 4483953 CCTAAATAGGAGCTACCAAGAGCTAAAGGCCAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751654 18 + 33263144 ---------------CCAAGAGCTAAAGGCCAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14032669 33 - 14338769 CCTAAACAGGAGCTACCAAGAGCTAAAGGCCAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 970945 33 + 1946073 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997476 33 - 2117846 CGTAAATAGGAGCCACCAAGAGCTAAAGGCTAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908617 33 - 16357246 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1392863 33 - 1807191 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 72398 33 + 5963231 CCTAAGTAGGAGCCATCAAGAGCTAAAGGCCAC i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5761001 33 + 108171978 CCTAAATAGGAGCCACCAAGAGCTAAAGACCAC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5127267 33 - 6317780 CCTAAATAGGAGCCACCAAGAGCTAAAGACCAC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36330710 33 - 42659167 CCTAAATAGGACTCACCAAGAGCTGAAGACCAC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82857891 33 + 104043685 CCTAATTCAGAGCCACCAAGAGCAAGAGACCAC i mm10.chr15 C 0 C 0 s canFam3.chr10 46139635 33 - 69331447 CCTCAGCAGGAGCTCCTAAGAACTGAAGACCAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 122760 26 + 1056298 -TCTAACAGGAGCCATTAAGAGCTAAA------ i dasNov3.JH570235 C 0 C 0 a score=1946642.000000 s hg38.chr22_GL383582v2_alt 128939 142 + 162811 TTTAAACATCAGGGTATCAGGCCTGAGGCTGCC-----------------CTATCTCCAGACAGGGAAAACAGATACAGG---AAGGACTCCTTCTTAGGTCTGTTCTCAG-CCTTCCCCTGCAGATTCCCTGTCCTGT-ATGA-TACCCCTT-TCCCTATTGTTA s panTro5.chr22 28908885 139 + 37823149 TTTAAACATCAGGGTATCAGGCCTCAGGCTGCC-----------------CTATCTC----CAGGGAAAACAGATACAGG---AAGGACTCCTTCTTAGGTCTGTTCTCAG-CCTTCCCCTGCAGATTCCCTGTCCTGT-ATGATTACCCTTT-TCCCTATTGTTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183435 142 + 50109623 TTTAAACATCAGGGTATCAGGCCTCAGGCTGCC-----------------CTATCTCCAGACAGGGAAAACAGATACAGG---AAGGACTCCTTCTTAGGTCTGTTCTCAG-CCTTCCCCTGCAGATTCCCTGTCCTGT-ATGA-TACCCTTT-TCCCTATTGTTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206255 142 + 4464012 TTTAAACATCAGCGTATCAGGCCTCAGGCTGCC-----------------CTATCTCCAGACAGGGAAAACAGATACAGG---AAGGACTCCTTCTTAGGTCTGTTCTCAG-CCCTCCCCTGCAGATTCCCTGTCCTGT-ATGA-TACCCCTT-TCCCTATTGTTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702083 142 - 115148730 TTTAAACATCAGCGTATCAGGCCTCAGGCTGCC-----------------CTATCTCCAGACAGGGAAAACAGATACACG---AAGGACTCCTTCTTAGGTCTGTTCTCAG-CCCTCCCCTGCAGATTCCCTGTCCTGT-ATGA-TACCCCTT-TCCCTATTGTTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318523 141 + 92844088 TTTAAACATCAGCATATCAGACCTCAGGCTGCC-----------------CTATCTCCAGACAGGGAAAACAGATACAGG---AAGGACT-CTTCTCAGGTCTGTTCTCAG-CTCTCCCAGGCAGATTCCCTGTCCTGT-ATGA-TACCTCTT-TCCCTATTGTTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87664887 141 - 96509753 TTTAAACATCAGCATATCAGACCTCAGGCTGCC-----------------CTATCTCCAGACAGGGAAAACAGATACAGG---AAGGACT-CTTCTCAGGTCTGTTCTCAG-CTCTCCCAGGCAGATTCCCTGTCCTGT-ATGA-TACCTCTT-TCCCTATTGTTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7161825 141 - 13098629 TTTAAACATCAGCATATCAGACCTCAGGCTGCC-----------------CTATCTCCAGACAGGGAAAACAGATACAGG---AAGGACT-CTTCTCAGGTCTGTTCTCAG-CTCTCCCAGGCAGATTCCCTGTCCTGT-ATGA-TACCTCTT-TCCCTATTGTTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4121377 141 - 4483953 TTTAAACATCAGCGTATCAGACCTCAGGCTGCC-----------------CTATCTCCAGACAGGGAAAACAGATACAGG---AAGGACT-CTTCTCAGGTCTGTTCTCAG-CTCTCCCAGGCAGATTCCCTGTCCTGT-ATGA-TACCTCTT-TCCCTATTGTTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751672 141 + 33263144 TTTAAACATCAGCATATGAGGCCTCAGGCTGCC-----------------CTATCTCCAGACAGGGAAAACAGATACAGG---AAGGACT-CTTCTCAGGTCTGTTCTCAG-CTCTCCCAGGCAGATTCCCCGTCCTGT-ATGA-TACCTCTT-TCCCTACTGTTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14032702 141 - 14338769 TTTAAACATCAGCATATCAGACCTCAGGCTGCC-----------------CTATCTCCAGACAGGGAAAATAGATACAGG---AAGGACT-CTTCTCAGGTCTGTTCTCAG-CTCTCCCAGGCAGATTCCCTGTCCTGT-ATGA-TACCTCTT-TCCCTATTGTTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 970978 142 + 1946073 TTTAAACATCAGCATATCAGGCCTCAGGCTGCC-----------------CTATCTCCAGACACAGAAAACAGATACAGG---AAGGACTCCTTCTCAGGTCTGTTCTCAG-CTCTCCCAGGCAGATTCCCTGTCCTGT-ATGA-TACCCCTT-TCCCTATTGTTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997509 142 - 2117846 TTTAAACATCAGCACATCAGGCCTCAGGCTGCC-----------------CTATCTCCAGACAGGAAAAACAGATACAGG---AAGGATTCCATCTCAGGTCTGTTCTCAG-CCCTCCCCAGAAGATTTCCTGTTCTGT-ATTA-TGCCCCTT-TCCCTACTGCTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908650 142 - 16357246 TTTATACATCAGCACATCAGGCCTCAGGCTGCC-----------------CTATCTCCAGACAGGAAAAACAGATACAGG---AAGGATTCCATCTCAGTTCTGTTCTCAG-CCCTCCCTGGCAGATTTCCTGTTCTGT-ATTA-TGCCCCTT-TCCCTATTGTTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1392896 142 - 1807191 TTTAAACATCAGCACATCAGGCCTCAGGCTGCC-----------------CTATCTCCAGACAGGAAAAACAGATACAGG---AACAATTCCATCTCAGGTCTGTTCTCAG-CCCTCCCCGGCAGATTTCCTGTTCTGT-ATTA-TGCCCCTT-TCCCTATTGTTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 72431 142 + 5963231 TTTAAACATCAGCACATCAGGCCTCAGGCTGCC-----------------CTATCTCCAGACAGGAAAAACAGATACAGG---AACGATTCCATCTCAGGTCTGTTCTCAG-CCCTCCCTGGCAGATTTCCTGTTCTGT-ATTA-TGCCCCTT-TCCCTATTGTTA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5761034 158 + 108171978 TTTAAACATCAGCACATCTGGCCTCAGGCTGCCTGCCGACTGAGAGAATCCTATCTCCAAACAGGGAA-ACAGATATGGG---AACATTTCCTTCTCAGGTCTGTTCTCAG-CCCTTTCCTGTAGATTCCTTGTCCTGT-ATGA-TGCCCTTC-TCCCTATTGTTA i micMur3.chr7 C 0 I 18 s proCoq1.NW_012136747v1 5127300 158 - 6317780 TTTAAACATCAGCACATCCGGCCTCAGGCTGCCTGCCTACTGAGAGTACCCTATCTCCAAACAGGGAA-ACAGATATGGG---AACATTTCCTTCTCAGGTCTGTTCTCAG-CCCTTTCCTGTAGATTCCTTGTCCTGT-ATGA-TGCCCTTC-TCCCTATTGTTA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36330743 142 - 42659167 TTTACATGTCAGCACGTCAGGCCTCAGGCTGTCTGCCTACTGAGAGAACTCTACCTCCAGACagacaagacagagatgag---aac-tttccttctcaggtctgttctcag-----------------ccttgccctgg-ATGA-TACCCCTC-TTCCTATTGTTA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46139668 156 - 69331447 -TTTAGCACCAGCCAGTTGCGCTGCATGCTGCCTGGTTCCTGAGAAAACCCTATCTCCA--CAGGGGA-AGAGACCTGGG---TTCGATTCCTCAGAGGGTCCATACTCAG-CCCTTCTCTAGAGATTCCCTGTCCTGTCAGGA-TGTCCTCC-TCCCTATTGTTA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 122786 151 + 1056298 ------------TAAATCTGGCCTCAAACTGCCTGGTTGCTGGAAGAAC-CCATATCTGGATACAGAAAACAGATTTGAGTGCCACAATTCCTTCTGAGGTCTGTTCTCAGCCCCTTCCCTATAGATTCTGCGATCTGC-ATGA-TGCCCTTTCTCCCTATTGTTA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C a score=17290.000000 s hg38.chr22_GL383582v2_alt 129081 1 + 162811 T s panTro5.chr22 28909024 1 + 37823149 T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183577 1 + 50109623 T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206397 1 + 4464012 T i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702225 1 - 115148730 T i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318664 1 + 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665028 1 - 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7161966 1 - 13098629 T i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4121518 1 - 4483953 T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751813 1 + 33263144 T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14032843 1 - 14338769 T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971120 1 + 1946073 T i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997651 1 - 2117846 T i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908792 1 - 16357246 T i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1393038 1 - 1807191 T i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 72573 1 + 5963231 T i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5127458 1 - 6317780 T i proCoq1.NW_012136747v1 C 0 I 753 s otoGar3.GL873526 36330885 1 - 42659167 T i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46139824 1 - 69331447 T i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 122937 1 + 1056298 T i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e micMur3.chr7 5761192 18 + 108171978 I a score=169456.000000 s hg38.chr22_GL383582v2_alt 129082 22 + 162811 GGTTCTACTTTATGAAAAAG-AA s panTro5.chr22 28909025 20 + 37823149 GGTTCTACTTTATGAAAAAG--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183578 20 + 50109623 GGTTCTACTTTATGAAAAAG--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206398 23 + 4464012 GGTTCTACTTTATGaaaaagaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702226 23 - 115148730 GGTTCTACTTTATGAAATAGAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318665 23 + 92844088 GGTTCTACTTTATGGAATAGAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665029 23 - 96509753 GGTTCTACTTTATGGAATAGAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7161967 23 - 13098629 GGTTCTACTTTATGGAATAGAAG i macNem1.NW_012012688v1 C 0 I 1 s cerAty1.NW_011999588v1 4121519 23 - 4483953 GGTTCTACTTTATGGAATAGAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751814 23 + 33263144 GGTTCTACTTTATGGAATAGAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14032844 23 - 14338769 GGTTCTACTTTATGGAATAGAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971121 23 + 1946073 GGTTCTACTTTATGGAATAGAAG i colAng1.NW_012115588v1 C 0 I 1 s calJac3.chrUn_GL286373 1997652 16 - 2117846 GGTTCTATTTTATGGA------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908793 16 - 16357246 GGTTCTATTTTACGGA------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1393039 16 - 1807191 GGTTCTGTTTTATGGA------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 72574 16 + 5963231 GGTTCTATTTTATGGA------- i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36330886 21 - 42659167 AGTTGTATTTTATGAACTAGA-- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46139825 23 - 69331447 AGTTCTGGATTACGGACCAGACG i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 122938 22 + 1056298 GGTTCTGGTTTTAAGACTAGAA- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e proCoq1.NW_012136747v1 5127459 753 - 6317780 I e micMur3.chr7 5761192 18 + 108171978 I a score=850266.000000 s hg38.chr22_GL383582v2_alt 129104 65 + 162811 --AAAAAAA-AAATCCAAGGCCAAATACCTCCTGCAGGGTTCCAGTCATGCTAAATATTCTTAGTATA s panTro5.chr22 28909045 65 + 37823149 --AAAAAAA-AAATCCAAGGCCAAATACCTCCTGCAGGGTTCCAGTCATGCTAAATATTCTTAGTATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183598 64 + 50109623 ---AAAAAA-AAATCCAAGGCCAAATACCTCCTGCAGGGTTCCAGTCATGCTAAATATTCTTAATATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206421 65 + 4464012 --aaaaaaa-aaaTCCAAGGCCAAATACCTCCTGCAGGGTTCCAGTCATGCTAAATATTCTTAGTATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702249 65 - 115148730 --AAAAAAA-AAATCCAAGGCCAAATACCTCCTGCAGGGTTCCAGTCATGCTAAATATTCTTAGTATA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318688 65 + 92844088 --AAAAAAA-AAATTCAAGGCCAAATACCTCCTGCATGGGTCCAGCCACGCTAAATATTCTTAGTATA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665052 65 - 96509753 --AAAAAAA-AAATTCAAGGCCAAATACCTCCTGCATGGGTCCAGCCACGCTAAATATTCTTAGTATA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7161991 65 - 13098629 --AAAAAAA-AAATTCAAGGCCAAATACCTCCTGCATGGGTCCAGCCACGCTAAATATTCTTAGTATA i macNem1.NW_012012688v1 I 1 C 0 s cerAty1.NW_011999588v1 4121542 65 - 4483953 --AAAAAAA-AAAATCAAGGCCAAATACCTCCTGCATGGGTCCAGTCACGCTAAATATTCTTACTATA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751837 65 + 33263144 --AACAAAA-AAATTCAAGGCCAAATACCTCCTGCATGGGTCCAGTCACGCTAAATATTCTTAGTATA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14032867 65 - 14338769 --AAAAAAA-AAATTCAAGGCCAAATACCTCCTGCATGGGTCCAGTCACGCTAAATATTCTTAGCATA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971145 63 + 1946073 --AAAAAAA-AAATTCAAGGCCAAATACATCCTGCATGGGTCCAGTCACGCTAAATAT--TTAGTATA i colAng1.NW_012115588v1 I 1 C 0 s calJac3.chrUn_GL286373 1997668 66 - 2117846 --ATTAAAAGAAATTCATGGCCAAATACCTCCTGCAGTGTTCCAGTCATGCTAAATATTCTTGGTATA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908809 65 - 16357246 --ATTTAAA-AAATCCATAGCCAAATACCTCCTGCAGGGTTCCATTCATGCTAAATATTCTTAGTATA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1393055 65 - 1807191 --ATTAAAA-AAATCCATGGCCAAATACCTCCTGCAGGGTTCCAGTCATGCTAAATATTCTTAGCATA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 72590 65 + 5963231 --ATTAAAA-AAATCCACGGCCAAATACCTCCTGCAGGGTTCCAGTCATGCTAAATATTCTTAGCATA i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5761210 64 + 108171978 --AAAAAAA-AAATCCACAGCCAAATAAATCCTGCAGGGTACCAGTCAAGCT-AATATTTTTAGTATA i micMur3.chr7 I 18 I 33 s otoGar3.GL873526 36330907 65 - 42659167 --AGAAAAA-AAATCCACAGCCAAATACCTCCTACAGGGCACTAGTCAAGCTAAATATTTTTAGTATA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46139851 65 - 69331447 --AAAGAAA-AAATTTCCAGCCAAATACCTCCTGCAGGATACCAGTCATGCTAAATATTCTTCACAAA i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 122960 67 + 1056298 GAGAAAGAA-TAATCCACAACCAAATGTCACCTGCAAGATACCAGTCAACTGAAATATTCTCAGTGCA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e proCoq1.NW_012136747v1 5127459 753 - 6317780 I a score=459106.000000 s hg38.chr22_GL383582v2_alt 129169 41 + 162811 CATGAAGCACCTGAGTAGGAGAAGGTGG-TTGCCCAGGTTTA s panTro5.chr22 28909110 41 + 37823149 CATGAAGCACCTGAGTACGAGAAGGTGG-TTGCCCAGGTTTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183662 41 + 50109623 CATGAAGCACCTGAGTACGAGAAGGTGG-TTGCCCAGGTTTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206486 41 + 4464012 CATGAAGCACCTGAGTACGAGAAGGTGG-TTGCCCAGGTTTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702314 41 - 115148730 CATGAAGCACCTGAGTACTAGAACATGG-CTGCCCAGGTTTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318753 41 + 92844088 CATGAAGCACCTGAGTACTAGAACGTGG-TTGCCCAGATTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665117 41 - 96509753 CATGAAGCACCTGAGTACTAGAACGTGG-TTGCCCAGATTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162056 41 - 13098629 CATGAAGCACCTGAGTACTAGAACGTGG-TTGCCCAGATTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4121607 41 - 4483953 CATGAAGCACCTGAGTACTAGAAGGTGG-TTGCCCAGGTTTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751902 41 + 33263144 CATGAAGCACCTGAGTACTAGAAGGTGG-TTGCCCAGGTTTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14032932 41 - 14338769 CATGAAGCACCTGAGTACTAGAAGGTGG-TTGCCCAGGTTTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971208 41 + 1946073 CATGAAGCACCTGAGTACTAGAAGGTGG-TTGCCCAGGTTTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997734 41 - 2117846 CATGAAGCACCTGAGTACCAGAAGGTGG-TTGTCCAGATTTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908874 42 - 16357246 CATGAAGCATCTGAGTACCAGAAGGTGGTTTGTCCAGGTTTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1393120 41 - 1807191 CATGAAGCACCCAAGTACCAGAAGGTGG-TTGTCCAGGTTTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 72655 41 + 5963231 CATGAAGCACCAGAGTACCAGAAGGTGG-TTGTCCAGGTTTA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36330972 35 - 42659167 CATGAAGTATTTGAGTACCAG---GTGC-TTG--CAAGTTT- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46139916 39 - 69331447 CATAAAGGATCTGGTCATGAGAAAGTGA-ATA--GAAGTTCA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 123027 39 + 1056298 TATGAAGTGTCTGATTACCAGAAGGTGA-TTG--TAAATTTG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e proCoq1.NW_012136747v1 5127459 753 - 6317780 I e micMur3.chr7 5761274 33 + 108171978 I a score=600534.000000 s hg38.chr22_GL383582v2_alt 129210 42 + 162811 TCTTTTTT---AGGAATGCCAAGTAAACCAATTAAGAAAACCAAG s panTro5.chr22 28909151 42 + 37823149 TCTTTTTT---AGGAATGCCAAGTAAACCAATTAAGAAAACCAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183703 42 + 50109623 TCTTTTTT---AGGAATGCCAAGTAAACCAATTAAGAAAACCAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206527 42 + 4464012 TCTTTTTT---AGGAATGCCAAGTAAACCAATTAAGTAAACCAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702355 42 - 115148730 TCTTTTTT---AGGAATGCCAAGTAAACCAATTAAGAAAACCAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318794 42 + 92844088 TCTTTTCT---AGGAATACCAAGAAAACCAATTAAGAAAACCAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665158 42 - 96509753 TCTTTTCT---AGGAATACCAAGAAAACCAATTAAGAAAACCAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162097 42 - 13098629 TCTTTTCT---AGGAATGCCAAGAAAACCAATTAAGAAAACCAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4121648 42 - 4483953 TCTTTTCT---AGGAATGCCAAGAAAACCAATTAAGAAAACCAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751943 42 + 33263144 TCTTTTCT---AGGAATGCCAAGAAAACCAATTAAGAAAACCAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14032973 42 - 14338769 TCTTTTCT---AGGAATGCCAAGAAAACCAATTAAGAAAACCAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971249 42 + 1946073 TCTTGTCT---AGGAATGCCAAGAAAACCAATTAAGGAAACCAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997775 42 - 2117846 TCTTTTTT---AGGAATTCCAAGTAAACCAATTAAGAAAACCAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908916 42 - 16357246 TCTTTTTT---AGGAATTCCAAGTAAACCAATTAAGAAAACCAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1393161 45 - 1807191 TCTTTTTTAAAAGGAATTCCAAGTAAACCAATTAAGAAAACCAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 72696 42 + 5963231 TCTTTTTT---AGGAATTCCAAGTAAACCAATTAAGAAAACCAAG i aotNan1.NW_018512383v1 C 0 C 0 s micMur3.chr7 5761307 42 + 108171978 TCTTTTTT---AGGAGCTCCAAGTAAACCAATTAGGAAAACCAAG i micMur3.chr7 I 33 I 5083 s otoGar3.GL873526 36331007 40 - 42659167 --CTTTTT---AGGAGTTCCAAGTGAAGCAATTAGAAAAACCAAG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46139955 41 - 69331447 TCTGTTTT---AGGAGTTCCAAATAAAGCAA-TAGGCAAACCAAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 123066 41 + 1056298 -TTCTTTT---AGTAGTTCCAAGTAAAGCAATTAGGAAAACCAAG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e proCoq1.NW_012136747v1 5127459 753 - 6317780 I a score=420418.000000 s hg38.chr22_GL383582v2_alt 129252 35 + 162811 TAGCATATACCAACGACAG-AAAATGTAAACCTGGA s panTro5.chr22 28909193 35 + 37823149 TAGCATATACCAACGACAG-AAAATGTAAACCTGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183745 35 + 50109623 TAGCATATACCAACGACAG-AAAATGTAAACCTGGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206569 35 + 4464012 TAGCATATACCAACGACAG-AAAATGTAAACCTGGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702397 35 - 115148730 TAGCATATACCAATGACAG-AAAACGTAAACCTGGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318836 35 + 92844088 TAGTATACACCAACAACAG-AAAATGTAAACCTGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665200 35 - 96509753 TAGTATACACCAACAACAG-AAAATGTAAACCTGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162139 35 - 13098629 TAGTATACACCAACAACAG-AAAATGTAAACCTGGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4121690 35 - 4483953 TAGTATACACCAACAACAG-AAAATGTAAACCTGGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24751985 35 + 33263144 TAGTATACACCAACAACAG-AAAATGTAAACCTGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033015 35 - 14338769 TAGTATACACCAACAACAG-AAAATGTAAACCTGGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971291 35 + 1946073 TAGTATACACCAACAACAG-AAAACGTAAACCTGGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997817 35 - 2117846 TAGTATATATCAACAACAG-AAAATGTAAACCTGGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8908958 35 - 16357246 TAGTATGTATCAACAACAG-AAAATATAAACCTGGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1393206 35 - 1807191 TAGTATATATCAACAACAG-AAAATGTAAACCTGGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 72738 35 + 5963231 TAGTATATATCAACAACAG-AAAATGTAAACCTGGA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36331047 34 - 42659167 TAATATATATCAGTAATAG-AAAATGTAAACCTGC- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46139996 30 - 69331447 -----TATACTAGTAATTG-AAAATGTCAGCCCAGA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 123107 31 + 1056298 -----TATTCCAGAAATGGAAAAATGTAAACCCAGA i dasNov3.JH570235 C 0 I 215 e mm10.chr15 82857924 0 + 104043685 C e proCoq1.NW_012136747v1 5127459 753 - 6317780 I e micMur3.chr7 5761349 5083 + 108171978 I a score=800144.000000 s hg38.chr22_GL383582v2_alt 129287 113 + 162811 GCTATaaaataagtaataggctgggt-gtggtggctcacacctgt-aatc-ccagtgttttgg--gaggctgaggtgtgaggatcgcttgaggtcaggagttcaagaccagcct---gg----gt s panTro5.chr22 28909228 113 + 37823149 GCTATAAAATAAGTAATAggctgggt-gtggtggctcatacctgt-aatc-ccagtgttttgg--gaggctgaggtgtgaggatcgcttgaggtcaggagttcaagaccagcct---gg----gt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183780 113 + 50109623 GCTATAAAATAAGTAATAggctgggt-gtggtggctcatacctgt-aatc-ccagtgttttgg--gaggctgaggtgtgaggatcgcttgaggtcaggagttcaagaccagcct---gg----gt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206604 113 + 4464012 GCTATAAAATAAGTAATAggctgggt-gtggtggctcacacctgt-aatc-ccagtgttttgg--gaggctgaggtgtgaggatcgcttgaggtcaggagttcaagaccagcct---gg----gt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702432 113 - 115148730 GCTATAAAATAAGTAATAggctgggt-gtgttggctcacacctgt-aatc-ccagtattttgg--gaggctgaggtgggaggatctcttgaggtcaggagttcaagaccagcct---gg----gt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318871 116 + 92844088 GCTAAAAAATAAGTAATAggctgggt-gtggtggctcacatctgtcaatc-ccagtgttttgggagaggctaaagtgggaggattgcttgaggtc---agttcaagaccagcctggggg----gg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665235 116 - 96509753 GCTAAAAAATAAGTAATAggctgggt-gtggtggctcacatctgtcaatc-ccagtgttttgggagaggctaaagtgggaggattgcttgaggtc---agttcaagaccagcctggggg----gg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162174 115 - 13098629 GCTAAAAAATAAGTAATAggctgggt-gtggtggctcacatctgtcaatc-ccagtgttttgggagaggctaaagtgggaggattgcttgaggtc---agttcaagaccagcct-gggg----gg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4121725 113 - 4483953 GCTAAAAAATAAGTAATAggctgggt-gtggtggctcacatctgtcaatc-ccagtgttttgggagaggctaaagtgggaggattgcttgaggtc---agttcaagaccagcct---gg----gg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752020 113 + 33263144 GCTAAAAAATAAGTAACAggctgggt-gtggtggctcacatctgtcaatc-ccaatgttttgg--gaggctgaagtgggaggattgcttgaggtc---agttcaagaccagcct-gggg----gg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033050 115 - 14338769 GCTAAAAAATAAGTAATAggctgggt-gtggtggctcacatctgtcaatc-ccagtgttttgggagaggctaaagtgggaggattgcttgaggtc---agttcaagaccagcct-gggg----gg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971326 117 + 1946073 GCTATAAAATAAGTAATAggctgggt-gtggtggctcacacctgtcaatc-ccagtgttttgg--gaggctgaagtgggaggatcgcttgaggtc---agttcaagaccagcct-ggggaaaaag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997852 110 - 2117846 GCTATAA---AAGTAATAGGCTGTGTAAAggtggctcacacctgt-aa-caccagtgtttagg--gaggctgagatgagaggatcg-ttgaggtcagaagttcaagacaggcct---ga----gt i calJac3.chrUn_GL286373 C 0 I 14 s saiBol1.JH378157 8908993 110 - 16357246 GCTATAA---AAGTAATAggctgtgt-aaggtggctcacacctgt-aatcaccagtgtttagg--taggctgagatgagaggattg-ttgaggtcagaagttcaagaccagcct---ga----gt i saiBol1.JH378157 C 0 I 24 s cebCap1.NW_016107750v1 1393241 110 - 1807191 GCTATAA---AAGTAATAGGCTGTGT-AAggtggctcacacctgt-aatcaccagtgtttagg--gaggctgagatgagacgatca-ttgaggtcagaagttcaagactagcct---ga----gt i cebCap1.NW_016107750v1 C 0 I 51 s aotNan1.NW_018512383v1 72773 110 + 5963231 GCTATAA---AAGTAACAggctgtgt-aaggtggctcacacctgt-aatcaccagcgtttagg--gaggctgagatgagaggatcg-ttgaggtcagaagttcaagaccagcct---ga----gt i aotNan1.NW_018512383v1 C 0 I 14 s otoGar3.GL873526 36331081 75 - 42659167 --------------------cttggt-g------------cctgt--agc-ttagcagctagg--gtgccagccacata-----caccggagctggcaggtttgaacccagcct---gg----gc i otoGar3.GL873526 C 0 I 27 s canFam3.chr10 46140026 20 - 69331447 ------------------------GT-------------ATTTGT-AATT-TTAGTATT------------------------------------------------------------------ i canFam3.chr10 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123138 215 + 1056298 I e proCoq1.NW_012136747v1 5127459 753 - 6317780 I e micMur3.chr7 5761349 5083 + 108171978 I a score=5371.000000 s hg38.chr22_GL383582v2_alt 129400 9 + 162811 t-aaaa----aaaa s panTro5.chr22 28909341 9 + 37823149 t-aaaa----aaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183893 9 + 50109623 t-aaaa----aaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206717 8 + 4464012 t--aaa----aaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702545 10 - 115148730 taaaaa----aaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318987 9 + 92844088 g-gggg----ggga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665351 9 - 96509753 g-gggg----ggga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162289 9 - 13098629 g-aaga----aaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4121838 9 - 4483953 g-ggaa----aaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752133 9 + 33263144 g-aaaa----aaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033165 7 - 14338769 g---aa----aaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971443 9 + 1946073 a-aaaa----aaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1997976 13 - 2117846 -caaaaaaacaaaa i calJac3.chrUn_GL286373 I 14 I 22 s saiBol1.JH378157 8909127 9 - 16357246 -caaaa----aaaa i saiBol1.JH378157 I 24 I 21 s aotNan1.NW_018512383v1 72897 9 + 5963231 -caaaa----aaaa i aotNan1.NW_018512383v1 I 14 I 19 s otoGar3.GL873526 36331183 8 - 42659167 -caaaa----aaa- i otoGar3.GL873526 I 27 C 0 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123138 215 + 1056298 I e canFam3.chr10 46140046 0 - 69331447 C e proCoq1.NW_012136747v1 5127459 753 - 6317780 I e micMur3.chr7 5761349 5083 + 108171978 I e cebCap1.NW_016107750v1 1393351 51 - 1807191 I a score=1038832.000000 s hg38.chr22_GL383582v2_alt 129409 104 + 162811 ttttaaatgcacagtgtcatgaggtgtgcctacagtcccagctgctcaagaggctgaggtaggacgattgcttgaactcaggagttcgaggctgcaacgagcta s panTro5.chr22 28909350 104 + 37823149 ttttaaatgcacagtgtgatgaggtgtgcctacagtcccagctgctcaagaggctgaggtaggacgattgcttgaactcaggagttcgaggctgcaatgagcta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41183902 102 + 50109623 ttt--aatgcacagtgtgatgaggtgtgcctacagtcccagctgctcaagaggctgaggtaggacgattgcttgaactcaggagttcgaggctgcaatgagcta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206725 104 + 4464012 ttttaaatgcacagtgtgatgaggtgtgcctacagtcccagctgctcaagaggctgaggtaggacgattgcttgaactcaggagttcaaggctgcaatgagcta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702555 104 - 115148730 tttaaaatgcacagtgtgatgaggtatgcctacagtcccagctgctcaagaggctgaggtgggatgattgcttgaactctggagttcgaggctgcaatgagcta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84318996 104 + 92844088 attaaaatacacagtgtgatgaggtatgcctatagtcccagctgctcaagaggctgaggtaggaggactgcttgaactcaggagttcaagattgcaatgagcta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665360 104 - 96509753 attaaaatacacagtgtgatgaggtatgcctatagtcccagctgctcaagaggctgaggtaggaggactgcttgaactcaggagttcaagattgcaatgagcta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162298 104 - 13098629 attaaaatacacagtgtgatgaggtatgcctatagtcccagctgctcaagaggctgaggtaggaggactgcttgaactcaggagttcaagattgcaatgagcta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4121847 104 - 4483953 attaaaatacacaatgtgatgaggtatgcctatagtcccagctgctcaagaggctgaggtaggaggactgcttgaactcaggagttcaagattgtaaggagcta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752142 104 + 33263144 attaaaatacacagtgtgatgaggtatgcctatagtcccagctgctcaagaggctgaggtaggaggactgcttgaactcaggaattcaagattgcaatgagcta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033172 104 - 14338769 attaaaatacacagtgtgatgaggtatgcctatagtcccagctgctcaagaggctgaggtaggaggactgcttgaactcaggagttcaagattgcaatgagcta i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971452 104 + 1946073 attaaaatacacagtgtgatgaggtatgcctacagtcccagctgctcaagaggctgaggtaggaggactgcttgaactcagaagttcaagattgcaatgagcta i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998011 104 - 2117846 tttttaatgcacagtgtgatgaggtgtgactacagtctcagctgctcaggaggctgagatgggaggattgcttgaactcaggagttcgaggttgcaatgagcta i calJac3.chrUn_GL286373 I 22 C 0 s saiBol1.JH378157 8909157 104 - 16357246 tttttaacgcacagtgtgatgaggtgtgactacagtcccagctgctcaggaggctgagatgggaggattgcttgaactcaggagttcgaggttgcaatgagcta i saiBol1.JH378157 I 21 C 0 s cebCap1.NW_016107750v1 1393402 104 - 1807191 tttttcatgcacagtgtgatgaggtgtgactacagtcccagctgctcaggaggctaagatgggaggattgcttgaactcaggagttcgaggttgcaattagcta i cebCap1.NW_016107750v1 I 51 C 0 s aotNan1.NW_018512383v1 72925 104 + 5963231 tctttaatgcacagtgtgatgaggtgtgactacagtcccagctgctcaggaggctgagatgggaggattgcttgaactcaggagttcgaggttgcaatgagcta i aotNan1.NW_018512383v1 I 19 C 0 s otoGar3.GL873526 36331191 98 - 42659167 ---cagctgggcgttgtagtgag---tgcctgtagtcccagctacttgggaggctgactcaacagaattgctcaagcccaagagttggaggctgctgtgagctg i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46140046 19 - 69331447 ------------AGCATTATAA-------------------------------------------------------------------------AATAAGCTA i canFam3.chr10 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123138 215 + 1056298 I e proCoq1.NW_012136747v1 5127459 753 - 6317780 I e micMur3.chr7 5761349 5083 + 108171978 I a score=446554.000000 s hg38.chr22_GL383582v2_alt 129513 102 + 162811 tgaatgtgccaatgtgctccaccctgggtgaca----gtaaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa--------------------aaaaaaaaaaaaaaaaaaG s panTro5.chr22 28909454 67 + 37823149 tgaatgtgccaatgtgctccaccctgggtgaca----gtaaccctgtctc-----------------------------------aa--------------------aaaaaaaaaaaaaaaaaaG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184004 65 + 50109623 tgaatgtgccaatgtgctccaccctgggtgaca----gtaaccctgtctc---------------------------------------------------------aaaaaaaaaaaaaaaaaCG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206829 78 + 4464012 tgaatgtgccaatgtgctccaccctgggtgaca----gcaaccctgtctc------------------------tttaaaaaaaaaa--------------------aaaaaaaaaaaaaaaaaaG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702659 88 - 115148730 tgaatgtgccaatgtgctccaccctgggtgaca----gtaaccctgtctc--------------TTTaaaaaaaaaaaaaaaaaaaa--------------------aaaaaaaaaaaaaaaaGAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319100 61 + 92844088 tgaatgtgccaatgtgctccaccctgggtgaca----gtaaccttgtctc--------------tt-----------------------------------------------aaaaaaaaaaaTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665464 61 - 96509753 tgaatgtgccaatgtgctccaccctgggtgaca----gtaaccttgtctc--------------tt-----------------------------------------------aaaaaaaaaaaTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162402 61 - 13098629 tgaatgtgccaatgtgctccaccctgggtgaca----gtaaccttgtctc--------------tt-----------------------------------------------aaaaaaaaaaaTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4121951 61 - 4483953 tgaatgtgccaatgtgctccaccctgggtgaca----gtaaccttgtctc--------------tt-----------------------------------------------aaaaaaaaaaaTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752246 70 + 33263144 tgaatgtgccaatgtgctccaccctgggtgaca----ggaaccttgtctc--------------tta------------------aa--------------------aaaaaaaaaaaaaaaaaTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033276 61 - 14338769 tgaatgtgccaatgtgctccaccctgggtgaca----gtaaccttgtctc--------------tt-----------------------------------------------aaaaaaaaaaaTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971556 63 + 1946073 tgaatgtgccagtgtgctccaccctgggtgaca----gtaaccttgtctc--------------tt---------------------------------------------aaaaaaaaaaaaaCG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998115 63 - 2117846 taaatgtgccaatgtgttccaccctgggtgaca----gagaccctgtctc--------------ta------------------aaa--------------------c-------aacaaaaaCTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909261 66 - 16357246 taaatgtgccaatgtgttccaccctgggcaaca----gagaccctgtctc--------------ta------------------aaa--------------------caa----aaacaaaaaCCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1393506 70 - 1807191 taaatgtgccaatgtgttccaccctaggtgaca----gagaccctgtctc--------------ta------------------aaa--------------------caaaaacaaacaaaaaCTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 73029 70 + 5963231 taaatgtgccaatgtgttccaccctgggtgaca----gagaccctgtctc--------------ta------------------aaa--------------------caaaaacaaacaaaaACTA i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36331289 109 - 42659167 tga---tacaacaacactctgccgagggtgacatagtgaaactctgtctc--------------CCCCCAGCAAAAGGAAATGTAAACCTTAAGTTTGTAATTTTACCATGAGCATATAAAACAGG i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123138 215 + 1056298 I e canFam3.chr10 46140065 0 - 69331447 C e proCoq1.NW_012136747v1 5127459 753 - 6317780 I e micMur3.chr7 5761349 5083 + 108171978 I a score=534890.000000 s hg38.chr22_GL383582v2_alt 129615 50 + 162811 CTAATAGAGATAATTCCAATTTTATCCCA---TCATCTT------AAAAAAAGCATCAG s panTro5.chr22 28909521 50 + 37823149 CTAATAGAGATAATTCCAATTTTATCCCA---TCATCTT------AAAAAAAGCATCAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184069 49 + 50109623 CTAATAGAGATAATTCCAATTTTATCCCA---TCATCTT-------AAAAAAGCATCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206907 50 + 4464012 CTAATAGAGATAATTCCAATTTTATCCCA---TCATCTT------AAAAAAAGCATCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702747 51 - 115148730 CTAATAGAGATAATTCCAATTTTATCCCA---TCATCTT-----TAAAAAAAGCATCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319161 51 + 92844088 CTAACAGAGATAATTCCAATGTTATCCTA---TCATCTT-----AAAAAAAAGCATCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665525 51 - 96509753 CTAACAGAGATAATTCCAATGTTATCCTA---TCATCTT-----AAAAAAAAGCATCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162463 51 - 13098629 CTAACAGAGATAATTCCAATGTTATCCTA---TCATCTT-----AAAAAAAAGCATCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122012 51 - 4483953 CTAACAGAGATAATTCCAATGTTATCCCA---TTATCTT-----AAAAAAAAGCATCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752316 51 + 33263144 CTAACAGAGATAATTCCAATGTTATCCCA---TCATCTT-----AAAAAAAAGCATCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033337 51 - 14338769 CTAACAGAGATAATTCCAATGTTATCCCA---TCATCTT-----AAAAAAAAGCATCAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971619 51 + 1946073 CTAACAGAGATAATTCCAATGTTATCCCA---TCATCTT-----AAAAAAAAGCATCAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998178 55 - 2117846 CTAACAGAGATAATTCCAATGCTATCCCA---TCATCTT-AAAAAAAGGAAAGCATCAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909327 56 - 16357246 CTAATAGAGATAATTCCAATGTTATCCCA---TCATCTTAAAAAAAAGAAAAGCATCAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1393576 55 - 1807191 CTAACAGAGAGAATTCCAATGCTATCCCA---TCATCTT-AAAAAAAGAAAAGCATCAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 73099 55 + 5963231 CTAACAGAGATAATTCCAAGGATATCCCA---TCATCTT-AAAAAAAGAAAAGCATCAG i aotNan1.NW_018512383v1 C 0 C 0 s otoGar3.GL873526 36331398 47 - 42659167 CTAAC------AATTCCAATATTATCCCACTGTTGTTTT------TGAAAAAGCATCAG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46140065 47 - 69331447 CTAATAGAGATCATTCCAAAACTATCCTA---TCATTTT-------AAAAAAGCAAA-- i canFam3.chr10 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123138 215 + 1056298 I e proCoq1.NW_012136747v1 5127459 753 - 6317780 I e micMur3.chr7 5761349 5083 + 108171978 I a score=15561.000000 s hg38.chr22_GL383582v2_alt 129665 1 + 162811 T s panTro5.chr22 28909571 1 + 37823149 T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184118 1 + 50109623 T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206957 1 + 4464012 T i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702798 1 - 115148730 T i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319212 1 + 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665576 1 - 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162514 1 - 13098629 T i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122063 1 - 4483953 T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752367 1 + 33263144 T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033388 1 - 14338769 T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971670 1 + 1946073 T i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998233 1 - 2117846 T i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909383 1 - 16357246 T i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1393631 1 - 1807191 T i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 73154 1 + 5963231 T i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5128212 1 - 6317780 T i proCoq1.NW_012136747v1 I 753 C 0 s otoGar3.GL873526 36331445 1 - 42659167 T i otoGar3.GL873526 C 0 I 1384 s canFam3.chr10 46140112 1 - 69331447 T i canFam3.chr10 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123138 215 + 1056298 I e micMur3.chr7 5761349 5083 + 108171978 I a score=481825.000000 s hg38.chr22_GL383582v2_alt 129666 37 + 162811 GTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAA s panTro5.chr22 28909572 37 + 37823149 GTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184119 37 + 50109623 GTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206958 37 + 4464012 GTAGTCAGTTTTAAAGCACTGTGATCAGTAATAATAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702799 31 - 115148730 GTAGTCAGTTTTAAAGCACTGTGATTAG------TAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319213 37 + 92844088 GTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665577 37 - 96509753 GTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162515 37 - 13098629 GTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122064 37 - 4483953 GTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752368 37 + 33263144 GTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033389 37 - 14338769 GTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971671 37 + 1946073 GTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998234 37 - 2117846 GTAGTTAGTTTTAAGGCACTGTGATTAGTGATAGTAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909384 37 - 16357246 GTAGTCAGTTTTAAAGCACTGTGATTAGTGATAGTAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1393632 37 - 1807191 GTAGTCAGTTTTAAAGCACTGTGATTAGTGATAGTAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512383v1 73155 37 + 5963231 GTAGTCAGTTTTAAAGCACTGTGATTAGTGATAGTAA i aotNan1.NW_018512383v1 C 0 C 0 s proCoq1.NW_012136747v1 5128213 37 - 6317780 GTAATCAGTTTTAAAGTGTTGTGATTAGTAACTACAG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36332830 37 - 42659167 ACAGCTGGTTTTAAAGTGTTATGATTAATAACAAAAG i otoGar3.GL873526 I 1384 T 1421 s canFam3.chr10 46140113 37 - 69331447 CTAATTAGTTTTGAAGCATCGTGATTAATAATGACAA i canFam3.chr10 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123138 215 + 1056298 I e micMur3.chr7 5761349 5083 + 108171978 I a score=354914.000000 s hg38.chr22_GL383582v2_alt 129703 27 + 162811 GTGCCTGAATTCCTTTGTTTAAATGAA s panTro5.chr22 28909609 27 + 37823149 GTGCCTGAATTCCTTTGTTTAAATGAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184156 27 + 50109623 GTGCCTGAATTCCTTTGTTTAAATGAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3206995 27 + 4464012 GTGCCTGAATTCCTTTGTTTAAATGAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702830 27 - 115148730 GTGTCTCAATTCCTTCGTTTAAATGAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319250 27 + 92844088 GTGCCTGAATTCCTTTGTTTAAATGAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665614 27 - 96509753 GTGCCTGAATTCCTTTGTTTAAATGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162552 27 - 13098629 GTGCCTGAATTCCTTTGTTTAAATGAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122101 27 - 4483953 GTGCCTGAATTCCTTTGTTTAAATGAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752405 27 + 33263144 GTGCCTGAATTCCTTTGTTTAAATGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033426 27 - 14338769 GTGCCTGAATTCCTTTATTTAAATGAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971708 27 + 1946073 GTGCCTGAATTCCTTTGTTTAAATGAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998271 27 - 2117846 ATGCCTGAATTCCTTTGTTTAAATGAA i calJac3.chrUn_GL286373 C 0 I 7 s saiBol1.JH378157 8909421 27 - 16357246 GCGCCTGAATTCCTTTGTTTAAATGAA i saiBol1.JH378157 C 0 I 7 s cebCap1.NW_016107750v1 1393669 27 - 1807191 GTACCTGAATTCCTTTGTTTAAATGAA i cebCap1.NW_016107750v1 C 0 I 7 s aotNan1.NW_018512383v1 73192 27 + 5963231 GTGCCTGAATTCCTTTGTTTAAATGAA i aotNan1.NW_018512383v1 C 0 N 0 s proCoq1.NW_012136747v1 5128250 27 - 6317780 ATGCCTGAATTCCCTTGTTTGAATGAA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36331446 25 - 42659167 Gggcttggcgtctgtggctcaagtg-- i otoGar3.GL873526 T 1421 C 0 s canFam3.chr10 46140150 27 - 69331447 ATGCCTGATTTTCCTTGTTTGAATGAA i canFam3.chr10 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123138 215 + 1056298 I e micMur3.chr7 5761349 5083 + 108171978 I a score=762652.000000 s hg38.chr22_GL383582v2_alt 129730 75 + 162811 TACAAATAG----TAAGGAAAATCTGATACCTCAAAGG-AATAAGTCACCTA--A-GGAACTTGCATACACACTCTAAAAAAG s panTro5.chr22 28909636 75 + 37823149 TACAAATAG----TAAGGAAAATCTGATACCCCAAAGG-AATAAGTCACCTA--A-GGAACTTGCATACACACTCTAAAAAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184183 75 + 50109623 TACAAATAG----TAAGGAAAATCTGATACCCCAAAGG-AATAAGTCACCTA--A-GGAACTTGCATACACACTCTAAAAAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207022 75 + 4464012 TACAAATAG----TAAGGAAAATCTGATACCCCAAAGG-AATAAGTCACCTA--A-GGAACTTGCATACATACTCTAAAAAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702857 75 - 115148730 TACAAATAG----TAAGGAAAATCTGATACCCCAAAGG-AATAAGTCACCTA--A-GGAACTTGCATACATACTCTAAAAAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319277 78 + 92844088 TACAAATAG-TAATAAGGAAAATCTGATGCCCCAAAGG-AGTAAGTCACCTA--A-GGAACTTGCATACATACTCTAAAAAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665641 78 - 96509753 TACAAATAG-TAATAAGGAAAATCTGATGCCCCAAAGG-AGTAAGTCACCTA--A-GGAACTTGCATACATACTCTAAAAAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162579 78 - 13098629 TACAAATAG-TAATAAGGAAAATCTGATGCCCCAAAGG-AATAAGTCACCTA--A-GGAACTTGCATACATACTCTAAAAAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122128 78 - 4483953 TACAAATAG-TAATAAGGAAAATCTGATGCCCCAAAAA-AGTAAGTCACCTA--A-GGAACTTGCATACATACTCTAAAAAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752432 78 + 33263144 TACAAATAG-TAATAAGGAAAATCTGATGCCCCAAAGG-AGTAAGTCACCTA--A-GGAACTTGCATACATACTCTAAAAAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033453 78 - 14338769 TACAAATAG-TAATAAGGAAAATCTGATGCCCCAAAGG-AGTAAGTCACCTA--A-GGAACTTGCATACATACTCTAAAAAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971735 78 + 1946073 TACAAATAG-CAATAAGGAAAATCTGATGCCCCAAAGG-AGTAAGTCACCTA--A-GGAACTTGCATACATACTCTAAAAAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998305 78 - 2117846 TACAAACAG-TAGTAAGGAAAATTTGATACCCCAAAGG-AGTAAGTCACCCA--A-GGAACTTGCATACATACTCTAAAAAAG i calJac3.chrUn_GL286373 I 7 C 0 s saiBol1.JH378157 8909455 78 - 16357246 TACAAACAG-TAGTAAGGAAAATCTGATACCCCCAAGG-AGTAAGTCACCCA--A-GGAACGTGCATACATACTCTAAAAAAG i saiBol1.JH378157 I 7 C 0 s cebCap1.NW_016107750v1 1393703 78 - 1807191 TACAAACAG-TAGTAAGGAAAATTTGATACCCCAAAGG-AGTAAGTCACCCA--A-GGAACTTGCATACATACTCTAAAAAAG i cebCap1.NW_016107750v1 I 7 C 0 s proCoq1.NW_012136747v1 5128277 81 - 6317780 TACAAACATGTAGTAAAGAAAATCTGGTATCTCAAAGGAACTAAGTCACCCA--CAGGAACTTGCATACATACTCTGAAAAAG i proCoq1.NW_012136747v1 C 0 I 5 s otoGar3.GL873526 36331471 29 - 42659167 ---------------------------------------gctaaggtgccag--c-----------cacatacacctaaga-- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46140177 81 - 69331447 TACAGACTT-GGATAAAGAAAATTTGAGACTCCAAAGGAAGTCAGTTACCCATGA-GGAATTTGTATACGCACTCTGAAAACA i canFam3.chr10 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123138 215 + 1056298 I e micMur3.chr7 5761349 5083 + 108171978 I a score=57699.000000 s hg38.chr22_GL383582v2_alt 129805 6 + 162811 Aggctg s panTro5.chr22 28909711 6 + 37823149 Aggctg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184258 6 + 50109623 Aggctg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207097 6 + 4464012 Aggctg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702932 6 - 115148730 AGGCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319355 6 + 92844088 AAgctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665719 6 - 96509753 AAgctg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162657 6 - 13098629 AAgctg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122206 6 - 4483953 Aggctg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752510 6 + 33263144 Aggctg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033531 6 - 14338769 Aggctg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971813 6 + 1946073 Aggctg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998383 6 - 2117846 Aggctg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909533 6 - 16357246 Aggttg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1393781 6 - 1807191 Aggctg i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46140258 6 - 69331447 GGTCTG i canFam3.chr10 C 0 I 34 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123138 215 + 1056298 I e otoGar3.GL873526 36331500 0 - 42659167 C e proCoq1.NW_012136747v1 5128358 5 - 6317780 I e micMur3.chr7 5761349 5083 + 108171978 I a score=930898.000000 s hg38.chr22_GL383582v2_alt 129811 114 + 162811 ggcacagtggctcacccctg-taatccctgaactttgggaggtcaaggcgggcagatcacttgggctcaggagttcgagaccagcctgggcaacatggcgaaaccc--tatctttat s panTro5.chr22 28909717 114 + 37823149 ggcacagtggctcacccctg-taatccctgaactttgggaggtcaaggcgggcagatcacttgggctcaggagttcgagaccagcctgggcaacatggcgaaaccc--tatctttat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184264 114 + 50109623 ggcacagtggctcacccctg-taatccctgaactttgggaggtcaaggcgggcagatcacttgggctcaggagttcgagaccagcctgggcaacatggcgaaaccc--tatctttac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207103 116 + 4464012 ggcacagtggctcacccctg-taatccctgaactttgggaggtcaaggcaggcagatcacttgggctcaggagtttgagaccagcctgggcaacatggtgaaaccctgtatctttat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106702938 110 - 115148730 Gg----gtggctcacacctg-taatccctgaacttcgggaggtcgaggcaggcagatcgcttgggctcaggagttcgagaccagcctgggcaacatggcgaaaccc--tatctctat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319361 113 + 92844088 ggcacagtggctcacacctg-taattcctgaactttgggaggtcgaggcaggcatatggcttgggctcaggagttc-agaccagcctgggcaacacggcgaaaccc--tatctctat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665725 114 - 96509753 ggcacagtggctcacacctg-taattcctgaactttgggaggtcgaggcaggcatatggcttgggctcaggagttcgagaccagcctgggcaacacggcgaaaccc--tatctctat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162663 114 - 13098629 ggcacagtggctcacacctg-taattcctgaactttgggaggtcgaggcaggcatatggcttgggctcaggagttcgagaccagcctgggcaacacggcgaaaccc--tatctctat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122212 114 - 4483953 ggcacagtggctcacacctg-taattcctgaactttgggaggtcgaggcaggcatatggcttgggctcaggagttcgagaccagcctgggcaacacagcgaaaccc--tatctctat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752516 114 + 33263144 ggcacagtggctcacacctg-taattcctgaactttgggaggtcgaggcaggcatatggcttgggctcaggagttcgagaccagcctgggcaacacggcgaaaccc--tctctctat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033537 115 - 14338769 ggcacagtggctcacacctgttaattcctgaactttgggaggtcgaggcaggcatatggcttgggctcaggagttcgagaccagcctgggcaacacagcgaaaccc--tatctctat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 971819 114 + 1946073 ggcacagtggctcacacctg-taattcctgaactttgagaggtcgaggcaggtatatggcttgggctcaggagtttgagaccagcctgggcaacacagtgaaaccc--tatctctat i colAng1.NW_012115588v1 C 0 I 399 s calJac3.chrUn_GL286373 1998389 114 - 2117846 ggcacagtggctcacacctg-taactccagcactttgggaggctgaggcaaggggatcgcttgggcttgggaatttgagacccgcctgggcaacatggagaaaccc--tatctctat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909539 114 - 16357246 ggcacagtggctcacacctg-taattccagcactttgggaggttaaggcaaggggatcgcttgggcttgggagtttgagatcagcctgggcaacatggagaaaccc--tatctctat i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1393787 114 - 1807191 ggcacagtggctcacaccta-taattccagcactttgggaggttgaggcaaggggatcgcttgggcttgggagtttgagaccagcctgggcaacatggagaaaccc--tatctctat i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36331500 41 - 42659167 ------------------------------------------------------------------tggcgggttcgaatccagtccaggccaaacagccaaacaa--t-------- i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123138 215 + 1056298 I e canFam3.chr10 46140264 34 - 69331447 I e proCoq1.NW_012136747v1 5128358 5 - 6317780 I e micMur3.chr7 5761349 5083 + 108171978 I a score=1543189.000000 s hg38.chr22_GL383582v2_alt 129925 173 + 162811 aaaaaataca----aaaatt-agccaggcatggtgatgcgtgcctgtagtcccagcacctcggggggctgaggcaggaggatcgcctgagcctcggaggcagaggttgcagtgagcagagatcgcgccact--------gccctccagcctgggcaacaaagcgagattccgtctcaataaataaa s panTro5.chr22 28909831 173 + 37823149 aaaaaataca----aaaatt-agccaggcatggtgatgcgtgcctgtagtcccagcacctcggggggctgaggcaggaggatcgcctgagcctcggaggcagaggttgcagtgaacagagatcgtgccact--------gccctccagcctgggcaacaaagcgagattccgtctcaataaataaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184378 173 + 50109623 aaaaaataca----aaaatt-agccaggcatggtgatgcgtgcctgtagtcccagcacctcggggggctgaggcaggaggatcgcctgagcctcggaggcagaggttgcagtgagcagagatcgtgccact--------gccctccagcctgggcaacaaagcgagattccatctcaataaataaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207219 173 + 4464012 aaaaaataca----aaaatt-agccaggcatggtgatgcgtgcctgtagtcccagcacctcgggggaatgaggcaggaggatcgtctgagcctcggaggcagaggttgcagtgagcagagatcgctccact--------gccctccagcctgggcaacaaagcgagattctgtctcaataaataaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703048 173 - 115148730 aaaaaataca----aaaatt-agccaagcatggtgatgcgtgcctgtactcccagcaactcggggggctgaggcaggaggatcgcctgagcctgggaggcagaggttgcagtgagcagagatcacgccact--------gccctccagcccgggcaacaaagcgagattctgtctcaataaataaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319474 172 + 92844088 aaaaaataca----aaaatt-agccgggcatggtgatgcgtgcctgcagtcccagcaactcggggggttgaggcgggaggatcgcctgagccc-ggaggcagaggttgcagtgagctgagattgcgccact--------gccctccagcctaggcaacaaagcgagattctgtctcaataaataaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87665839 172 - 96509753 aaaaaataca----aaaatt-agccgggcatggtgatgcgtgcctgcagtcccagcaactcggggggttgaggcgggaggatcgcctgagccc-ggaggcagaggttgcagtgagctgagattgcgccact--------gccctccagcctaggcaacaaagcgagattctgtctcaataaataaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162777 172 - 13098629 aaaaattaca----aaaatt-agccgggcatggtgatgcgtgcctgcagtcccagcaactcggggggttgaggcgggaggatcgcctgagccc-ggaggcagaggttgcagtgagctgagattgcgccact--------gccctccagcctgggcaacaaagcgagattctgtctcaataaataaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122326 173 - 4483953 aaaaaataca----aaaatt-agccgggcatggtgatgcgtgcctgcagtcccagcaactcggggggttgaggcgggaggatcgcctgagcccgggaggcagaggttgcagtgagctgagattgcgccact--------gccctccagcctgggcaacaaagcgagattctgtctcaataaataaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752630 173 + 33263144 aaaaaataca----aaaatt-agccgggcatggtgatgcgtgcctgtagtcccagcaactcggggggctgaggcggaaggatcgcctgagcctgggaggcagaggatgcagtgagctcagattgcgccact--------gccctccagcctgggcaacaaagcgagattctgtctcaataaataaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033652 173 - 14338769 aaaaaataca----aaaatt-agccgggcatggtgatgcgtgcctgcagtcccagcaactcggggggttgaggcgggaggatcgcctgagtccgggaggcagaggttgcagtgagttgagattgcgccact--------gccctccagcctgggcaacaaagcgagattctgtctcaataaagaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972332 181 + 1946073 Aaaaaataca----aaaatt-agccggacatggtgatgcgtgcctgtagtcccagcaacttggggggctgaggcgggaggatcgcctgagcccgggaggcagaggttgcagtgagctgagattgcaccactgccctccagccctccagcctgggtaacaaagcgagattctgtctcaataaataaa i colAng1.NW_012115588v1 I 399 C 0 s calJac3.chrUn_GL286373 1998503 173 - 2117846 aagaaataca----acaatt-agccaggcgtagtgatgcatgcctgcagtcccagcaactcagggggttaagactggaggatcatctgagcccggaaggcaaaggtttcagtgagctgaaatcccaccact--------gctctccagcctggtcaacaaagcgatattctgtctcaagaaataaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909653 172 - 16357246 aagaaataaa----acaact-agccaggtgtagtgacgcatgcctgcagtcccagcaacttagggggctaaaacgggaggatcacctgagcccggaaggcaaaggtttcagtgagctgaaatcctgccact--------gctctccagcctggtcagcaaagggatattctgtc-caagaaataaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1393901 174 - 1807191 aggaaataca----acaattaagccaggtgtagtgatgcatgcctgcagtcccagcaactcagggggctaagacgggaggatcacctgagcccagaaggcaaaggtttcaatgagctgaaatctcgccact--------gctctccagcctggtcaacaaagaaatattctgtctcaagaaataaa i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36331541 174 - 42659167 gatggctgcaacccaaaaaa-agccgggcattgtggcgggtgcctgtggtcccagctacttgggaggctgaggcaggagacttgcttgagcccaggagttggaggttgctgtgagctatgat---gccaca--------gcactctacccaggaggacagcttgaggctctgtctcaaaaaaaaaa i otoGar3.GL873526 C 0 I 1252 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123138 215 + 1056298 I e canFam3.chr10 46140264 34 - 69331447 I e proCoq1.NW_012136747v1 5128358 5 - 6317780 I e micMur3.chr7 5761349 5083 + 108171978 I a score=-15651.000000 s hg38.chr22_GL383582v2_alt 130098 2 + 162811 ta s panTro5.chr22 28910004 2 + 37823149 ta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184551 2 + 50109623 ta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207392 2 + 4464012 ta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703221 1 - 115148730 t- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319646 2 + 92844088 ga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666011 2 - 96509753 ga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162949 2 - 13098629 ga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122499 2 - 4483953 ga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752803 2 + 33263144 ga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033825 2 - 14338769 ga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972513 2 + 1946073 ga i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998676 1 - 2117846 t- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909825 1 - 16357246 t- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394075 1 - 1807191 t- i cebCap1.NW_016107750v1 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123138 215 + 1056298 I e canFam3.chr10 46140264 34 - 69331447 I e otoGar3.GL873526 36331715 1252 - 42659167 I e proCoq1.NW_012136747v1 5128358 5 - 6317780 I e micMur3.chr7 5761349 5083 + 108171978 I a score=71126.000000 s hg38.chr22_GL383582v2_alt 130100 11 + 162811 a----aaaaGAGGCC s panTro5.chr22 28910006 11 + 37823149 a----aaaaGAGGCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184553 11 + 50109623 a----aaaaGAGGCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207394 11 + 4464012 a----aaaaGAGGCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703222 9 - 115148730 ------aaagaaGCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319648 13 + 92844088 aat--aaaaGAGGTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666013 13 - 96509753 aat--aaaaGAGGTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162951 13 - 13098629 aat--aaaaGAGGTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122501 15 - 4483953 aataaaaaaGAGGTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752805 15 + 33263144 aataaaaaaGAGGTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033827 15 - 14338769 aataaaaaaGAGGTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972515 15 + 1946073 aataaaaaaGAGGTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998677 10 - 2117846 -----aaaaaaGATC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909826 10 - 16357246 -----aaaaaaGATC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394076 10 - 1807191 -----aaaaaaGATC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36332967 13 - 42659167 --TGAAAAAGATGTT i otoGar3.GL873526 I 1252 C 0 s dasNov3.JH570235 123353 11 + 1056298 ----AAAAAGAGGTT i dasNov3.JH570235 I 215 C 0 e mm10.chr15 82857924 0 + 104043685 C e canFam3.chr10 46140264 34 - 69331447 I e proCoq1.NW_012136747v1 5128358 5 - 6317780 I e micMur3.chr7 5761349 5083 + 108171978 I a score=230754.000000 s hg38.chr22_GL383582v2_alt 130111 24 + 162811 TACCGATGTACT-T--CCCATCCATAA s panTro5.chr22 28910017 24 + 37823149 TACCGATGTACT-T--CCCATCCATAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184564 24 + 50109623 TACCGATGTACT-T--CCCATCCATAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207405 26 + 4464012 TACCGATGTACT-TCCCCCATCCATAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703231 24 - 115148730 TACTGGTGTACT-T--CCTATCCATAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319661 24 + 92844088 TACCAATGTACT-T--CCCATCCATAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666026 24 - 96509753 TACCAATGTACT-T--CCCATCCATAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162964 24 - 13098629 TACCAATGTACT-T--CCCATCCATAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122516 24 - 4483953 TACCAATGTACT-T--CCCATCCATAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752820 24 + 33263144 TACCAATGTACT-T--CCCATCCATAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033842 24 - 14338769 TACCAATGTACT-T--CCCATCCATAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972530 24 + 1946073 TACCAATGTACT-T--CCCATCCATAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998687 24 - 2117846 TACCAATGTACT-T--CCTGTTCATAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909836 24 - 16357246 TACCAATGTACT-T--CCTGTTCATAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394086 24 - 1807191 TACCAATGTACT-T--CCTGTTCATAC i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5128363 21 - 6317780 TACCAATGTACT-T--TCCATCCT--- i proCoq1.NW_012136747v1 I 5 C 0 s otoGar3.GL873526 36332980 21 - 42659167 TATCAATATACT-T--TCCATCCT--- i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 123364 21 + 1056298 TACCAACATGCGAC--CCTATCC---- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C e canFam3.chr10 46140264 34 - 69331447 I e micMur3.chr7 5761349 5083 + 108171978 I a score=10920.000000 s hg38.chr22_GL383582v2_alt 130135 1 + 162811 T s panTro5.chr22 28910041 1 + 37823149 T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184588 1 + 50109623 T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207431 1 + 4464012 T i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703255 1 - 115148730 T i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319685 1 + 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666050 1 - 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162988 1 - 13098629 T i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122540 1 - 4483953 T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752844 1 + 33263144 T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033866 1 - 14338769 T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972554 1 + 1946073 T i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998711 1 - 2117846 T i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909860 1 - 16357246 T i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394110 1 - 1807191 T i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46140298 1 - 69331447 T i canFam3.chr10 I 34 C 0 e mm10.chr15 82857924 0 + 104043685 C e dasNov3.JH570235 123385 0 + 1056298 C e otoGar3.GL873526 36333001 0 - 42659167 C e proCoq1.NW_012136747v1 5128384 0 - 6317780 C e micMur3.chr7 5761349 5083 + 108171978 I a score=586597.000000 s hg38.chr22_GL383582v2_alt 130136 63 + 162811 GA------CTCTCCCTTTCC----TGTTTTT-CTCCTATATTCCTAAC-TT--TCTGAAC------------AGTTTCAG-AAGGGC-------TGT s panTro5.chr22 28910042 61 + 37823149 GA------CTCTCCCTTTCC----TGTTTTT-CTCCTATATTCCTAAC-TT--TC--AAC------------AGTTTCAG-AAGGGC-------TGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184589 61 + 50109623 GA------CTCTCCCTTTCC----TGTTTTT-CTCCTATATTCCTAAC-TT--TC--AAC------------AGTTTCAG-AAGGGC-------TGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207432 63 + 4464012 GA------CTCTCCCTTTCC----TGTTTTT-CTCCTATATTCCTAAC-TT--TCTGAAC------------AGTTTCAG-AAGGGC-------TGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703256 63 - 115148730 GA------CTCTCCCTTTCC----TGTTTTT-CTCCTATATTCCTAAC-TT--TCTGAAC------------AGTTTCAG-AAGTGC-------TGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319686 58 + 92844088 AA------CTCTCCCTTTCCTGTTTGTTTTT-CTCTTATATTCCT------------AAC------------AGTTTCAG-GAGGGC-------TGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666051 58 - 96509753 AA------CTCTCCCTTTCCTGTTTGTTTTT-CTCTTATATTCCT------------AAC------------AGTTTCAG-GAGGGC-------TGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7162989 58 - 13098629 AA------CTCTCCCTTTCCTGTTTGTTTTT-CTCTTATATTCCT------------AAC------------AGTTTCAG-GAGGGC-------TGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122541 58 - 4483953 AA------CTCTCCCTTTCCTGTTTGTTTTT-CTCTTATATTCCT------------AAC------------AGTTTCAG-GAGGGC-------TGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752845 58 + 33263144 AA------CTCTCCCTTTCCTGTTTGTTTTT-CTCTTATATTCCT------------AAC------------AGTTTCAG-GAGGGC-------TGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033867 58 - 14338769 AA------CTCTCCCTTTCCTGTTTGTTTTT-CTCTTATATTCCT------------AAC------------AGTTTCAG-GAGGGC-------TGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972555 54 + 1946073 AA------CTCTCCCTTTCC----TGTTTTT-CTCCTATATTCCT------------AAC------------AGTTTCAG-AAGGGC-------TGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998712 62 - 2117846 GA------CTCTCCCCTTCC----TGTTTTT-CTCTCATATTCCTAAC-TTTCT---AAC------------AGTTTCAG-AAGGGC-------TGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909861 67 - 16357246 GACTCTCCCTCTCCCTTTCC----TGTTTTTCCTCATATATTCCTAAC-TT--T---AAC------------AGTTTCAG-AAGGGC-------TGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394111 60 - 1807191 GA------CTCTCCCTTTCC----TGTTTTT-CTCATATATTCCTAAC-TT--T---AAC------------AGTTTCAG-AAGGGC-------TGT i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5766432 63 + 108171978 GA------CTTTCCCTCTCC----TGATTTT-CCCATGTATTTCTAAC-TT--TCTGAAT------------GGTTTTAG-AAGGGT-------TGT i micMur3.chr7 I 5083 C 0 s proCoq1.NW_012136747v1 5128384 63 - 6317780 GA------CTTTCCCTCTCC----TGATTTT-CCCACGTATTCCTAAA-TT--TCTGAAT------------GGTTTCAG-AAGGGC-------TAT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36333001 83 - 42659167 GA------CTTTCCCTTTCC----TGTTTTT-CTCACACATTTCCACC-TT--TCCGAATGGTAATGTGGAGGGTGTCAGCAAGGGCCAGGTAATGT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46140299 61 - 69331447 GA------CT-TCCCTTTTT----TGATCTT-CTCCTGTTCTCCTAGC-TT--TCTGAAT------------GGTTTCAG-G-GAGC-------TGT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 123385 64 + 1056298 TA------CTCTCCCTTTCC----TGTTTTT-CTCACATACTCCTAACATT--TCTGAAT------------GGTCTCAG-AAAGGT-------TGT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82857924 0 + 104043685 C a score=359770.000000 s hg38.chr22_GL383582v2_alt 130199 27 + 162811 GGAGGTGTATTAGTGAGGTCCAGAACT s panTro5.chr22 28910103 27 + 37823149 GGAGGTGTATTAGTGAGGTCCAGAACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184650 27 + 50109623 GGAGGTGTATTAGTGAGGTCCAGAACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207495 27 + 4464012 GGAGGTGTATTAGTGAGGTCCAGAACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703319 27 - 115148730 GGAGGTGTATTAGTGAGGTCCAGAACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319744 27 + 92844088 GGAGGTGTCTTAGTGAGGTACAGAACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666109 27 - 96509753 GGAGGTGTCTTAGTGAGGTACAGAACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163047 27 - 13098629 GGAGGTGTCTTAGTGAGGTACAGAACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122599 27 - 4483953 GGAGGTGTCTTAGTGAGGTACAGAACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752903 27 + 33263144 GGAGGTGTCTTAGTGAAGTACAGAACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033925 27 - 14338769 GGCGGTGTCTTAGTGAGGTACAGAACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972609 27 + 1946073 GGAGGTGTATTAGTGAGGTACAGAACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998774 27 - 2117846 GGAGGTATATTAGCAAGGTCCAGAACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909928 27 - 16357246 GGAGGTATATTAGCAAGGTCCAGAACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394171 27 - 1807191 GGAGGTATATTAGTAAGGTCCAGAACT i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5766495 26 + 108171978 -GAGGTGTGCTAGCTAGGTCCAGAACT i micMur3.chr7 C 0 I 303 s proCoq1.NW_012136747v1 5128447 27 - 6317780 GGAGGTGTGCTAGCTAGGTCCAGAACT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36333084 27 - 42659167 GGAGGGTTGTCAGCAAGGGCCAGAACT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82857924 27 + 104043685 AAAAGAGTAGTTATAAGGTCCAGGACT i mm10.chr15 C 0 C 0 s canFam3.chr10 46140360 27 - 69331447 GGAGTTGCACAAGCGAGGTCCTGAACT i canFam3.chr10 C 0 I 6 s dasNov3.JH570235 123449 26 + 1056298 GGAGGT-TACCAGTTGGGTCCACAGTC i dasNov3.JH570235 C 0 C 0 a score=253907.000000 s hg38.chr22_GL383582v2_alt 130226 24 + 162811 CTGTGCCTAAACATTCCAG-AGTCC s panTro5.chr22 28910130 24 + 37823149 CTGTGCCTAAACATTCCAG-AGTCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184677 24 + 50109623 CTGTGCCTAAACATTCCAG-AGTCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207522 24 + 4464012 CTGTGCCTCAACATTCCAG-AGTCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703346 24 - 115148730 CTGTGCCTATAAATTCCAG-AGTTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319771 24 + 92844088 CTGTGCCTATACATTCCAG-AGTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666136 24 - 96509753 CTGTGCCTATACATTCCAG-AGTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163074 24 - 13098629 CTGTGCCTATACATTCCAG-AGTCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122626 24 - 4483953 CTGTGCCTATACATTCCAG-AGTCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752930 24 + 33263144 CTGTGCCTATACATTCCAG-AGTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033952 24 - 14338769 CTGTGCCTATACATTCCAG-AGTCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972636 24 + 1946073 CTGTGCCTATACATTCCAG-AGTCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998801 24 - 2117846 CTGTGCCTATACATACCAA-AGTCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909955 24 - 16357246 CTGTGCCTATACATTCCAA-AGTCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394198 24 - 1807191 CTGTGCCTATACATTCCAA-AGTCC i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5128474 24 - 6317780 TCAGGCCTATGCATTCCAG-AGTCC i proCoq1.NW_012136747v1 C 0 I 85 s otoGar3.GL873526 36333111 24 - 42659167 TCAGCCCTATACAATCCAG-AGTCC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82857951 21 + 104043685 TTGAGTCTACACATTCC---AGTC- i mm10.chr15 C 0 C 0 s canFam3.chr10 46140393 25 - 69331447 CTGTATGGTCACAGCCTAGAAGTCC i canFam3.chr10 I 6 C 0 s dasNov3.JH570235 123475 18 + 1056298 CAGTGACTTCATGTTTTA------- i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5766521 303 + 108171978 I a score=335907.000000 s hg38.chr22_GL383582v2_alt 130250 47 + 162811 ATGTGCCGACCTC----ACAA--ACTCACT--CATAAC--CAGCTGCAGACTTGTTC s panTro5.chr22 28910154 47 + 37823149 ATGTGCCGACCTC----ACAA--ACTCACT--CATAAC--CAGCTGCAGACTTGTTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184701 47 + 50109623 ATGTGCCGACCTC----ACAA--ACTCACT--CATAAC--CAGCTGCAGACTTGTTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207546 47 + 4464012 ATGTGCCGAACTC----ACAA--ACTCACT--CATAAC--CAGCTGCAGACTTGTTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703370 47 - 115148730 ATGTGTCCACCTC----ACAA--ACTCACT--CATAAC--CAGCTGCAGACTTGTTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319795 49 + 92844088 ATGTGCCAACCTC----ACAA--ACTCACTCACATAAC--CAGCTGCAGACTTGTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666160 49 - 96509753 ATGTGCCAACCTC----ACAA--ACTCACTCACATAAC--CAGCTGCAGACTTGTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163098 49 - 13098629 ATGTGCCAACCTC----ACAA--ACTCACTCACATAAC--CAGCTGCAGACTTGTTC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122650 49 - 4483953 ATGTGCCAACCTC----ACAA--ACTCACTCACATAAC--CAGCTGCAGACTTGTTC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24752954 49 + 33263144 ATGTGCCAACCTC----ACAA--ACTCACTCACATAAC--CAGCTGCAGACTTGTTC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14033976 49 - 14338769 ATGTGCCAACCTC----ACAA--ACTCACTCACATAAC--CAGCTGCAGACTTGTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972660 49 + 1946073 ATGTGCCAACCTC----ACAA--ACTCACTCACATAAC--CAGCTGCAGACTTGTTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998825 47 - 2117846 ATATGCTGACCTC----ACAA--ACTCACT--CATAAC--CAGCTGCAGACTTTTTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8909979 47 - 16357246 GTATGCTGTCCTC----ACAA--ACTCACT--CATAAG--CAGCTGCAGACtttttt i saiBol1.JH378157 C 0 I 311 s cebCap1.NW_016107750v1 1394222 47 - 1807191 GTATGCTGACCTC----ACAA--ACTCACT--CATAAC--CAGCTGCAGACTTTTTA i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36333135 47 - 42659167 ACATGTTTACCTCCGTTACAACCACTGTCT--CCTAGCTGCAGCTGCAT-------- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82857972 17 + 104043685 -------------------------------------C--CAGTTGTGGAC-TGTTC i mm10.chr15 C 0 C 0 s canFam3.chr10 46140418 40 - 69331447 ACACGCCCACCTC----ATGG-----CAAT--CA------CAGCTTCTGCCTGGGGC i canFam3.chr10 C 0 I 4 s dasNov3.JH570235 123493 10 + 1056298 -----------------------------------------------AGCCTTCTTC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5128498 85 - 6317780 I e micMur3.chr7 5766521 303 + 108171978 I a score=398768.000000 s hg38.chr22_GL383582v2_alt 130297 34 + 162811 TCCCCATCCTA--TTAGAGGGCTGATGACCTTGCCC s panTro5.chr22 28910201 34 + 37823149 TCCCCATCCTA--TTAGAGGGCTGATGACCTTGCCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184748 34 + 50109623 TCCCCATCCTA--TTAGAGGGCTGATGACCTTGCCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207593 34 + 4464012 TCCCCATCCTA--TTAGAGGGCTGATGACCTTGCCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703417 34 - 115148730 TCCCCATCCTA--TTAAAGGGCTGATGACCTTGCCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319844 34 + 92844088 TCCCCATCCTA--TTGGAAGGTTGATGACCTTGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666209 34 - 96509753 TCCCCATCCTA--TTCGAAGGTTGATGACCTTGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163147 34 - 13098629 TCCCCATCCTA--TTGGAAGGTTGATGACCTTGCCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122699 34 - 4483953 TCCCCATCCTA--TTGGAAGGTTGATGACCTTGCCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24753003 34 + 33263144 TCCCCATCCTA--TTGGAAGGTTGATGAGCTTGCCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14034025 34 - 14338769 TCCCCATCCTA--TTGGAAGGTTGATGACCTTGCCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972709 34 + 1946073 TCCCCATCCTA--TTGGAAGGTTGATGACCTTGCCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998872 34 - 2117846 TCCTCATTCTG--TTGGAGGGCTGATGACCTTGCCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8910337 34 - 16357246 TCCTCATCCTA--TTGGAGGGCTGATGACCTTGCCC i saiBol1.JH378157 I 311 C 0 s cebCap1.NW_016107750v1 1394269 34 - 1807191 TCCTCATCCTA--TTGGAGGGCTGATGACCTTGCCC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36333182 34 - 42659167 TCTCTATCATA--TTGGAGGGCTGACCACCTTGCTT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82857989 34 + 104043685 TCTCCAGCCTGGTTTGGAAAGCTGGTGACCTCAC-- i mm10.chr15 C 0 C 0 s canFam3.chr10 46140462 32 - 69331447 CCTCCACCCCA--TCACAGGCC--ACGACCTTGCCA i canFam3.chr10 I 4 C 0 s dasNov3.JH570235 123503 34 + 1056298 TCTTCATCCTA--TCTGAGGGCTGGTGACTTTGCCA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5128498 85 - 6317780 I e micMur3.chr7 5766521 303 + 108171978 I a score=992923.000000 s hg38.chr22_GL383582v2_alt 130331 83 + 162811 TCTTATAGAAAACCA--ACATTGGCTTTCTCTGTCCTTC-TT-CCTCCATATGTCCAACAACATCCCACTTCCCAATCCAtt----------ctctt s panTro5.chr22 28910235 83 + 37823149 TCTTATAGAAAACCA--ACATTGGCTTTCTCTGTCCTTC-TT-CCTCCATATATCCAACAACATCCCACTTCCCAATCCAtt----------ctctt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184782 83 + 50109623 TCTTATAGAAAACCA--ACATTGGCTTTCTCGGTCCTTC-TT-CCTCCATATATCCAACAACATCCCACTTCCCAATCCAtt----------ctctt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207627 83 + 4464012 TCTTATAGAAAACCA--ACATTGGCTTTCTCTGTCCTTC-TT-CCTCCGTATGTCCAACAACATCCCACTTCCCAATCCAtt----------ctctt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703451 83 - 115148730 TCTTATAGAAAACTA--ACATTGGCTTTCTCTGTCCTTC-TT-CCTCCATATGTCCAACAACATCTCACTTCCCAACCCAtt----------ctctt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319878 83 + 92844088 TCTTACAGAAAACCA--ACACTGGCTTTCTCTGTCCTCC-TT-CCTCCATATGTCCAACAACATCCCACTTCCCAATCCAtt----------ctctt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666243 83 - 96509753 TCTTACAGAAAACCA--ACACTGGCTTTCTCTGTCCTCC-TT-CCTCCATATGTCCAACAACATCCCACTTCCCAATCCAtt----------ctctt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163181 83 - 13098629 TCTTACAGAAAACCA--ACACTGGCTTTCTCTGTCCTCC-TT-CCTCCATATGTCCAACAACATCCCACTTCCCAATCCAtt----------ctctt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122733 83 - 4483953 TCTTACAGAAAACCA--ACACTGGCTTTCTCTGTCCTCC-TT-CCTCCATATGTCCAACAACATCCCACTTCCCAATCCAtt----------ctctt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24753037 83 + 33263144 TCTTACAGAAAACCA--ACACTGGCTTTCTCTGTCCTCC-TT-CCTCCATATGTCCAACAACATTCCACTTCCCAATCCAtt----------ctctt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14034059 83 - 14338769 TCTTACAGAAAACCA--ACACTGGCTTTCTCTGTCCTCC-TT-CCTCCATATGTCCAACAACATCCCACTTCCCAATCCAtt----------ctctt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972743 83 + 1946073 TCTTACAGAAAACCA--ACACTGGCTTTCTTTGTCCTCC-TT-CCTCCATATGTCCAACAACATCCCACTTCCCAATCCAtt----------ctctt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998906 81 - 2117846 TCTCATAGAAAACCA--ACACTGGCTTTCTCTGTCCTTC-TT-CCTCC--ATGTCCAGCATCATCCCACTTCCCAATCCATT----------CTCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8910371 93 - 16357246 TCTCACAGAAAACCA--ACACTGGCTTGCTCTGTCCTTC-TT-CCTCCATATGTCCAGCATCATCCCACTTCCCAATCCATTTGGTTttttgttttg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394303 83 - 1807191 TCTCATAGAAAACCA--ACACTGGCTTTCTCTGTCCTTC-TT-CTTCCGCATGTCCAGCATCATCCCACTTCCCAATCCATT----------CTCTG i cebCap1.NW_016107750v1 C 0 C 0 s proCoq1.NW_012136747v1 5128583 84 - 6317780 TCTTACAGAAAATCA--ACCTCAGCTTTCTTTGGCCTTCCTT-CCTCCACATGTCCAACATTATCCCACTCCCCAGTCCATT----------CTCTT i proCoq1.NW_012136747v1 I 85 I 110 s otoGar3.GL873526 36333216 83 - 42659167 TCTTACAGAAAACCT--ACCTCAGCTTGGTTTGTGCTTCTTT-CCTCCACATGTCC-ACATCGACCCATTCCCCAGGCTATT----------CTTTT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82858023 79 + 104043685 TTTTATTGAAAACTA--GTATTAACTTTTGTTGTCTTTC-TG-TCATCA----TCTAAGAGCATTATTCTCTCCAATGCATT----------CGGtt i mm10.chr15 C 0 C 0 s canFam3.chr10 46140494 78 - 69331447 TCTTATAGTAAA------CAGCAGCTTCCTTCGTCCCCC-TTCCCTTCACATGCCCAACGCCATCTCACTTTCCAATCCACT----------CTT-- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 123537 81 + 1056298 TCTCACCGAAAACCGCTACATTAACTTTCTTTTTCCTTC-TT-CCTTCCCATATTCAACATACTCCCAACTCCCTAAGAACT----------T---- i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5766521 303 + 108171978 I a score=27427.000000 s hg38.chr22_GL383582v2_alt 130414 3 + 162811 ttt s panTro5.chr22 28910318 3 + 37823149 ttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184865 3 + 50109623 ttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207710 3 + 4464012 ttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703534 3 - 115148730 ttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319961 3 + 92844088 tct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666326 3 - 96509753 tct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163264 3 - 13098629 tct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122816 3 - 4483953 ttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24753120 3 + 33263144 ttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14034142 3 - 14338769 ttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972826 3 + 1946073 ttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998987 3 - 2117846 Ctt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8910464 3 - 16357246 ttt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394386 3 - 1807191 ttt i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36333299 3 - 42659167 CTC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82858102 3 + 104043685 ttt i mm10.chr15 C 0 I 764 s canFam3.chr10 46140572 3 - 69331447 CTC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 123618 3 + 1056298 TAT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5128667 110 - 6317780 I e micMur3.chr7 5766521 303 + 108171978 I a score=-6270.000000 s hg38.chr22_GL383582v2_alt 130417 7 + 162811 t---------------------------ggaaag s panTro5.chr22 28910321 7 + 37823149 t---------------------------ggaaag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184868 7 + 50109623 t---------------------------ggaacg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207713 7 + 4464012 t---------------------------ggaaag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703537 7 - 115148730 t---------------------------ggaaag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319964 7 + 92844088 t---------------------------ggaaag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666329 7 - 96509753 t---------------------------ggaaag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163267 7 - 13098629 t---------------------------ggaaag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122819 7 - 4483953 t---------------------------ggaaag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24753123 7 + 33263144 t---------------------------ggaaag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14034145 7 - 14338769 t---------------------------ggaaag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972829 7 + 1946073 t---------------------------ggaaag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1998990 20 - 2117846 ttttttttttttttt-------------ggaga- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8910467 33 - 16357246 tgttttgttttgttttTTGGGGGGTGGGGGGga- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394389 13 - 1807191 tttttttt--------------------ggaaa- i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36333302 7 - 42659167 C---------------------------ACAAAG i otoGar3.GL873526 C 0 I 75 s canFam3.chr10 46140575 6 - 69331447 ---------------------------CACAAA- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 123621 7 + 1056298 T---------------------------CCAAAG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82858105 764 + 104043685 I e proCoq1.NW_012136747v1 5128667 110 - 6317780 I e micMur3.chr7 5766521 303 + 108171978 I a score=435335.000000 s hg38.chr22_GL383582v2_alt 130424 56 + 162811 agagtctcactctgttgcccaggctggagtgcagtggcatgaccacaggctcactg s panTro5.chr22 28910328 56 + 37823149 agagtctcactctgttgcccaggctggagtgcagtggcatgaccacaggctcactg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184875 56 + 50109623 agagtctcactctgttgcccaggctggagtgcagtggcatgaccacaggctcactg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207720 56 + 4464012 agagtctcactctgttgcccaggctggagtgcagtggcatgaccacaggctcactg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703544 56 - 115148730 agtgtctcactctgttgcccaggctggagtgcagtggcacgaccataggctcactg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84319971 54 + 92844088 a--gtctcactgtgttgcccaggctggagtacagtggcacaaccacgggctcgcca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666336 54 - 96509753 a--gtctcactgtgttgcccaggctggagtacagtggcacaaccacgggctcgtca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163274 54 - 13098629 a--gtctcactgtgttgcccaggctggagtacagtggcacaaccacgggctcgcca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122826 54 - 4483953 a--gtctcactgtgttgcccaggctggagtacagtggcacaaccacgggctcgcca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24753130 54 + 33263144 a--gtctcactgtgttgcccaggctggagtacagtggcacaaccacgggctcgcca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14034152 54 - 14338769 a--gtctcactgtgttgcccaggctggagtacagtggcacaaccacgggctcgcca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972836 54 + 1946073 a--gtcttactctgttgcccaggctggagtacagtggcacaaccacgggctcacca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1999010 53 - 2117846 ---gtctcactctgttgcccaggctggaaatcagtggcatgatcacaggctcactg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8910500 53 - 16357246 ---gtctcactctgttgcccaggctggaatgcaatggcatgatcacaggctcactg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394402 53 - 1807191 ---gtctcactctgttgcccaggctggaatgcagtggcatgatcacaggctcactg i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46140581 30 - 69331447 -------------GTTCTCCAAACTG-------------TCAATACAGGCTCCTTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 123628 32 + 1056298 ---TTCTC---------------------TACACTGGCATCAAGACAGTTTCATCT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82858105 764 + 104043685 I e otoGar3.GL873526 36333309 75 - 42659167 I e proCoq1.NW_012136747v1 5128667 110 - 6317780 I e micMur3.chr7 5766521 303 + 108171978 I a score=1032030.000000 s hg38.chr22_GL383582v2_alt 130480 119 + 162811 cggcctcaactcccagctcaggcaatcctcctgcctcagcctcccaagtagctgggaccacaggcatgggacccctggctaatttttaaaaaataattgggacta----tggctaatttttat s panTro5.chr22 28910384 119 + 37823149 cggcctcaacttccagctcaggcaatcctcctgcctcagcctcccaagtagctgggaccacaggcatgggacccctggctaatttttaaaaaataattgggacca----tggctaatttttat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41184931 119 + 50109623 cggcctcaacttccagctcaggcaatcctcctgcctcagcctcccaagtagctgggaccacaggcatgggacccctggctaatttttaaaaaataattgggacca----tggctaatttttac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207776 118 + 4464012 tggcctcaactcccagctcaggcaatcctcctgcctcagcctcccaagtagctgggaccacaggcatggga-ccctggttaatttttaaaaaataattgggacca----tggctaatttttat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703600 119 - 115148730 tagcctcaactcccagctcaggcaatcctcctgccttagcctcccaagtagctgggactatgggcatgggacccctggctaatttttaaaaaataattggggcca----tggttaatttttat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84320025 123 + 92844088 cagcctcaactcccagttcaggcaatactcctgcctcagcctcccaggtagctgggaccacaggcacggaacccccggctaatttttaaaaaataattgggaccatggttggttaatttttat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666390 123 - 96509753 cagcctcaactcccagttcaggcaatactcctgcctcagcctcccaggtagctgggaccacaggcacggaacccccggctaatttttaaaaaataattgggaccatggttggttaatttttat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163328 123 - 13098629 cagcctcaactcccagttcaggcaatactcctgcctcagcctcccaggtagctgggaccacaggcacggaacccccggctaatttttaaaaaataattgggaccatggttggttaatttttat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4122880 123 - 4483953 cagcctcaactcccagttcaggcaatactcctgcctcagcctcccaggtagctgggaccacaggcacggaacccctggctaatttttaaaaaataattgggaccatggttggttaatttttat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24753184 123 + 33263144 cagcctcaactcccagttcaggtaatactcctgcctcagcctcccaagtagctgggaccacaggcacggaacccctggctaatttttaaaaaataattgggaccatggttggttaatttttat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14034206 123 - 14338769 cagcctcaactcccagttcaggcaatactcctgcctcagcctcccaggtagctgggaccacaggcatggaacccctggctaatttttaaaaaataattgggaccatggttggttaatttttgt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 972890 123 + 1946073 cagcctcaactcccagttcaggcaatactcctgcctcagcctcccaagtagctgggaccacaggcacggaacccctggctaatttttaaaaaataattgggaccatggttggttaatttttat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1999063 123 - 2117846 cagcctcaaatcccagctcaagcaatcctcgtgcctcagcctcccaagtagctgggaccacaggcatgggccccctggctaattttaaaaaaataattgggaccataaatggccaatttttat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8910553 123 - 16357246 cagcctcaactcccagctcaagcaatcctcgtgcctcagcctcccaagtagctgggatcacaggcatgggcaccctggctaatttttaaaaaataattggaaccatgcgtggctaatttttat i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394455 123 - 1807191 cagcctcaactcccagctcaagcaatcctcatgcctcagcctcccaagtagctgggaccacaggcatgggccccccggctaatttttaaaaaataattgggaccatgcatggctaaattttat i cebCap1.NW_016107750v1 C 0 C 0 s dasNov3.JH570235 123660 80 + 1056298 ---TTCCAAGTACCTGCT-------TCCTCTTTCATCA----------CAGGTTTAACCA-----GTGATTTTCCTGGCTCATTCCTTAAGA------------------TATTAACCCATAT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82858105 764 + 104043685 I e canFam3.chr10 46140611 0 - 69331447 C e otoGar3.GL873526 36333309 75 - 42659167 I e proCoq1.NW_012136747v1 5128667 110 - 6317780 I e micMur3.chr7 5766521 303 + 108171978 I a score=978954.000000 s hg38.chr22_GL383582v2_alt 130599 150 + 162811 aatt---tcttaaaaatagagacag-agtctcactgtgctgtccaggctggtctcaaactcctgggctcaagccatcctgctgtttcaacctcccaaagtgctagaattcagccattgtgcctggccCCAGCTAATTTTTTCATCCTCTGTCAT s panTro5.chr22 28910503 150 + 37823149 aatt---tcttaaaaatagagacag-agtctcactgtgctgtccaggctggtctcaaactcctgggctcaagccatcctgctgtttcaacctcccaaagtgctagaattcagccattgtgcctggccCCAGCTAATTTTTTCATCCTCTGTCAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41185050 150 + 50109623 aatt---tcttaaaaatagagacag-agtctcactgtgctgtccaggctggtctcaaactcctgggctcaagccatcctgctgtttcaacctcccaaagtgctagaattcagccattgtgcctggccCCAGCTAATTTTTTCATCCTCTGTCAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3207894 150 + 4464012 aatt---tcttaaaaatagagacag-agtctcactgtgctgtccaggctggtctcaaactcctgggctcaagccatcctgctgtttcaacctcccagagtgatagaattcagccattgtgcctggccCCAGCTAATTTTTTCATCCTCTGTCAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703719 66 - 115148730 aatt---ttttaaaaatagagacag-agtctcactatgctgtccaggctggtctcaaactcctgggctca------------------------------------------------------------------------------------ i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84320148 149 + 92844088 agtt---ttaaaaaaata-agagac-agtctcactatgctgtccaggctggtttcaaactcctgggctcatgtgatcctgctgtttcaacctcccaaagtgttataattcagccactgcgcctgaccCCAGCTAATTTTTTCATCCTCTTTCAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666513 149 - 96509753 agtt---ttaaaaaaata-agagac-agtctcactatgctgtccaggctggtttcaaactcctgggctcatgtgatcctgctgtttcaacctcccaaagtgttataattcagccactgcgcctgaccCCAGCTAATTTTTTCATCCTCTTTCAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163451 149 - 13098629 agtt---ttaaaaaaata-agagac-agtctcactatgctgtccaggctggtttcaaactcctgggctcatgtgatcctgctgtttcaacctcccaaagtgttataattcagccactgcgcctgaccCCAGCTAATTTTTTCATCCTCTTTCAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4123003 149 - 4483953 agtt---ttaaaaaaata-agagac-agtctcactaagctgtccaggctggtttcaaactcctgggctcatgtgatcctgctgtttcaacctcccaaagtgttataattcagccactgcgcctgaccCCAGCTAATTTTTTCATCCTCTTTCAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24753307 149 + 33263144 agtt---ttaaaaaaata-agagac-agtctcactatgctgtccaggctggtttcaaactcctgggctcatgtgatcctgctgtttcaacctcccaacgtgttataattcagccactgtgcctgaccCCAGCTAATTTTTTCATCCTCTTTCAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14034329 149 - 14338769 agtt---ttaaaaaaata-agagac-agtctcactaagctgtccaggctggtttcaaactcctgggctcatgtgatcctgctgtttcaacctcccaaagtgttataattcagccactgcgcctgaccCCAGCTAATTTTTTCATCCTCTTTCAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 973013 148 + 1946073 agtt---ttttaaaaat--agagac-agtctcactatgctgtccaggctggtttcaaactcctgggctcatgtgatcctgctgtttcaacctcccaaagtgttataattcagccactgcgcctgaccCCAGCTAATTTTTTCATCCTCTTTCAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1999186 151 - 2117846 aatt--taaaaaaaaatagagacaagagtctcactatgctgcccaggctggtctcaaacttctgggttcaagcgatcatgctgtttcaacctcccaaagtgctagaattcagccactgtacttgg-ccCAGCTAATTTTTTCATCCTCTTTCAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8910676 152 - 16357246 aattaaaaaaaaaaaatagagacaa-actctcactatgctgcccaagctggtctcaaactcctgggttcaagcgatcctgctgtttcaacctgccaaagtgctagaattcagccactgtacctgg-ccCAGCTTATTTTTTCATCCTCTTTCAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394578 149 - 1807191 aatt---aaaaaaaaatagagacag-agtctcactatgctgcccaggctggtctcaaactcctgggttcaagcgatcctgctgtttcaacctcccaaagtgctagaattcagccactgtacctgg-ccCAGCTAATTTTTTCATCCTCTTTCAT i cebCap1.NW_016107750v1 C 0 C 0 s canFam3.chr10 46140611 51 - 69331447 -----------------------AA-TATCT--------------------TTTCAAGCACCTG------------CTTCCTCTTTCA--CTCC----------AGGTTTAACCAGTGT----------------------------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 123740 80 + 1056298 --------TATGTGCATT-AGA----AGTCACATTATGGCCTTTAAACGGG-----------------------------------------------GAACCAGCATTCA--CATCGTACCTGCCATCAGAG------------CTCTGTCAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82858105 764 + 104043685 I e otoGar3.GL873526 36333309 75 - 42659167 I e proCoq1.NW_012136747v1 5128667 110 - 6317780 I e micMur3.chr7 5766521 303 + 108171978 I a score=112361.000000 s hg38.chr22_GL383582v2_alt 130749 23 + 162811 G----------------ATTTTCTGCTTATTCTCCTTCT s panTro5.chr22 28910653 23 + 37823149 G----------------ATTTTCTGCTTATTCTCCTTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41185200 23 + 50109623 G----------------ATTTTCTGCTTATTCTCCTTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3208044 23 + 4464012 G----------------ATTTTCTGCTTATTCACCTTCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703785 9 - 115148730 ------------------------------TCTCCTTCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84320297 20 + 92844088 G----------------ATTTT---CTTATTCTCCTTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666662 20 - 96509753 G----------------ATTTT---CTTATTCTCCTTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163600 20 - 13098629 G----------------ATTTT---CTTATTCTCCTTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4123152 20 - 4483953 G----------------ATTTT---CTTATTCTCTTTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24753456 20 + 33263144 G----------------ATTTT---CTTATTCTCCTTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14034478 20 - 14338769 G----------------ATTTT---CTTATTCTCCTTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 973161 20 + 1946073 G----------------ATTTT---CTTATTCTCCTTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1999337 39 - 2117846 GTCAGGTTTAACCACTGATTTTCTGCTTATTCCCCTTCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8910828 39 - 16357246 GTCAGGTTTAACCACTAATTTTCTGCTTATTCCCCTTCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394727 39 - 1807191 GTCAGGTTTAACCACTGATTTTCTACTTATTCCCCTTCT i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36333384 23 - 42659167 G----------------ACTTTCTGCTTAATCCTCTTTC i otoGar3.GL873526 I 75 C 0 s canFam3.chr10 46140662 21 - 69331447 ------------------TTTTCTGCTCCTTCTCTTGCC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 123820 10 + 1056298 G----------------ACTGG---CTGA---------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82858105 764 + 104043685 I e proCoq1.NW_012136747v1 5128667 110 - 6317780 I e micMur3.chr7 5766521 303 + 108171978 I a score=258211.000000 s hg38.chr22_GL383582v2_alt 130772 20 + 162811 TTG---------CCTTTAAA-TCCTCAAG--A s panTro5.chr22 28910676 20 + 37823149 TTG---------CCTTTAAA-TCCTCAAG--A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41185223 20 + 50109623 TTG---------CCTTTAAA-TCCTCAAG--A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3208067 20 + 4464012 TTG---------CCTTTAAA-TCCTCAAG--A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703794 20 - 115148730 TTG---------CCTTTAAA-TCCTCAAG--A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84320317 20 + 92844088 TTG---------CCTTTAAA-TCCTCAAG--A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666682 20 - 96509753 TTG---------CCTTTAAA-TCCTCAAG--A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163620 20 - 13098629 TTG---------CCTTTAAA-TCCTCGAG--A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4123172 20 - 4483953 TTG---------CCTTTAAA-TCCTCAAG--A i cerAty1.NW_011999588v1 C 0 I 327 s chlSab2.chr19 24753476 20 + 33263144 TTG---------CCTTTAAA-TCCTCAAG--A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14034498 20 - 14338769 TTG---------CCTTTAAA-TCCTCAAG--A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 973181 20 + 1946073 TTG---------CCTTTAAA-TCCTCAAG--A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1999376 23 - 2117846 TTG---------CCTTTAAATTCCTCAAGATA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8910867 20 - 16357246 TTG---------CCTTTAAA-TCCTCAAG--A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394766 20 - 1807191 TTG---------CCTTTAAA-TCCTCAAG--A i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5766824 20 + 108171978 TTG---------CCTTTAAA-TCCTCAAG--A i micMur3.chr7 I 303 C 0 s proCoq1.NW_012136747v1 5128777 20 - 6317780 TTG---------CCTTTAAA-TCCTCAAG--A i proCoq1.NW_012136747v1 I 110 C 0 s otoGar3.GL873526 36333407 20 - 42659167 TTG---------CCTTTAAA-TTCTCAAG--T i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46140683 29 - 69331447 TTGGAAAAAAAACTCTTCAC-TTCTCAAG--A i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 123830 17 + 1056298 -----------ACCGCTGGC-TTCTCATA--- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82858105 764 + 104043685 I a score=7145.000000 s hg38.chr22_GL383582v2_alt 130792 1 + 162811 C s panTro5.chr22 28910696 1 + 37823149 T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41185243 1 + 50109623 T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3208087 1 + 4464012 T i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703814 1 - 115148730 T i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84320337 1 + 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666702 1 - 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163640 1 - 13098629 T i macNem1.NW_012012688v1 C 0 C 0 s chlSab2.chr19 24753496 1 + 33263144 T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14034518 1 - 14338769 T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 973201 1 + 1946073 T i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1999399 1 - 2117846 T i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8910887 1 - 16357246 T i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394786 1 - 1807191 T i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5766844 1 + 108171978 C i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5128797 1 - 6317780 C i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36333427 1 - 42659167 C i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46140712 1 - 69331447 T i canFam3.chr10 C 0 C 0 e mm10.chr15 82858105 764 + 104043685 I e dasNov3.JH570235 123847 0 + 1056298 C e cerAty1.NW_011999588v1 4123192 327 - 4483953 I a score=1026797.000000 s hg38.chr22_GL383582v2_alt 130793 111 + 162811 ATTGACAAT---GATGCATCTAGTTATAG--CCTGTGTAAGgga--tattccctgtttg-cccccacagcctc--tcctcacccatctccaccctactctatgccctagaacggacaa-tgg s panTro5.chr22 28910697 111 + 37823149 ATTGACAAT---GATGCATCTAGTTATAG--CCTGTGTAAGgga--tattccctgtttg-cccccacagcctc--tcctcacccatctccaccctactctatgccctagaagggacaa-tgg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41185244 111 + 50109623 ATTGACAAT---GATGCATCTAGTTATAG--CCTGTGTAAGgga--tattccctgtttg-cccccacagcctc--tcctcacccatctccaccctactctatgccctagaagggacaa-tgg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3208088 110 + 4464012 ATTGACAAT---GATGCATCTAGTTATAG--CCCGtgtgaggga--tattccctgtttg--ccccacagcctc--tcctcacccatctccaccctactctatgccctagaagggacaa-tgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703815 114 - 115148730 ATTGACAAT---GATGCGTCTAGTTAGAGCCCCTGtgtgaggga--tattccctgtttgccccccacagcctc--tcctcacccatctccaccatactctatgccctagaagggacaa-tgg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84320338 103 + 92844088 ATTGACAAT---GATGCATCTAGTTATAGCCCTTGtgtggggga--tattccctgctcg-cccccacagcctc--tcttcaccc----------tactctgtgccctagaagtgacac-tgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666703 103 - 96509753 ATTGACAAT---GATGCATCTAGTTATAGCCCTTGtgtggggga--tattccctgctcg-cccccacagcctc--tcttcaccc----------tactctgtgccctagaagtgacac-tgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163641 103 - 13098629 ATTGACAAT---GATGCATCTAGTTATAGCCCTTGtgtggggga--tattccctgctcg-cccccacagcctc--tcttcaccc----------tactctgtgccctagaagtgacac-tgg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4123519 103 - 4483953 ATTGACAAT---GATGCATCTAGTTATAGCCCTTGtgtggggga--tattccctgctcg-cccccacagcctc--tcttcaccc----------tactctgtgccctagaagtgacac-tgg i cerAty1.NW_011999588v1 I 327 C 0 s chlSab2.chr19 24753497 103 + 33263144 ATTGACAAT---GATGCATCTAGTTATAGCCCTTGtgtggggga--tattccctgctca-cccccacagcctc--tcttcatcc----------tactctgtgccctagaagtgacac-tgg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14034519 103 - 14338769 ATTGACAAT---GATGCATCTAGTTATAGTCCTTGtgtggggga--tattccctgctcg-cccccacagcctc--tcttcaccc----------tactctgtgccctagaagtgacac-tgg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 973202 103 + 1946073 ATTGACAAT---GATGCATCTAGTTACAGCCCTTGtgtggggga--tattccctgctcg-cccccacagcctc--tcttcaccc----------tactctgtgccctagaagggacac-tgg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1999400 108 - 2117846 ATTGACAAT---GATGCATCTAGTTATAGCCCCTGtgtggggga--tat----tgtttg-cccccacaccca---tcctcacccatctccacgctactctatgccctagatggggcac-tgg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8910888 109 - 16357246 ATTGACAAT---GATGCATCTAGTTATAGTCCCTGtgtgggggg--tat----tgtttg-cccccacacccac--tcctcacccatctccaccctactctatgccctagatggggcac-tgg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394787 111 - 1807191 ATTGACAAT---GATGCATCTAGTTATAGCCGCTGTGGGGGGGggatat----tgtttg-cccccacgcccac--tcctcacccatctccaccctactctatgccctagaaggggcac-tag i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5766845 108 + 108171978 ACTGACATA---TATGCATCTAGTCATGGCCCCTGTGT-GCGGA--TAC----TGTTTG-CCCCCAGGCCTAC--TCCTTACCCGTCCCCACCTTACTCTACGCCCTGGGAGGAGCAT-TGT i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5128798 109 - 6317780 ATTAACATA---TATGCATCTAATCATGGCCCCTGTGTAGGgga--tat----tgtttg-gccccaggcctac--tccttacccatccccaccttactctatgccctgggaggagcac-tgt i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36333428 109 - 42659167 ATTAACATA---CATGTGTCTAGTTACAGCCCCTAtgtatggga--tac----tgtttg-tcccc-ggcctac--tcctcatccatttccacattactctatgccctggaaggggaacttgg i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46140713 116 - 69331447 AAAAACACTCCCTACACATCTAGTCATGGCCTCTGCCTGGTGGAT-TATTC--TGTTTG-CCCTC-CAGCTTCCTTTCTCCCCCATCTCCGCCCTGCTCTACATCCTGCAAGGGGGCA-CAG i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 123847 65 + 1056298 --------------------------TGACCCCTGCATAGTGGG--TATTCTTGGTTTG-GCCTTTCAGCAGC--TCCACTCCC----------ACCCATCTTCcc---------------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82858105 764 + 104043685 I a score=2908319.000000 s hg38.chr22_GL383582v2_alt 130904 217 + 162811 aaggacaactgacaggccccaccaccct-tgccttctgacccagtttggctggtaaga--ggcagga---gaggaggaaagtg----agaggaactt-actctcctggctcccaccccgaggttactgaggctggctgagaccct-ccaccaatggctgcagctcc-atcg-------ggcaacctcaacatatagccactttctccaaactccaggaaccacttcatcct-ctgccc s panTro5.chr22 28910808 217 + 37823149 aaggacaactgacaggtcccaccaccct-tgccttctgacccagtttggctggtaaga--ggcagga---gaggaggaaagtg----agaggaactt-actctcctggctcccaccccgaggttactgaggctggctgagaccct-ccaccaatggctgcagctcc-atcg-------ggcaacctcaacatatagccactttctccaagctccaggaaccacttcatcct-ctgccc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41185355 217 + 50109623 aaggataactgacaggccccaccaccct-tgccttctgacccagtttggctggtaaga--ggcagga---gaggaggaaagtg----agaggaactt-actctcctggctcccaccccgaggttactgaggctggctgagaccct-ccaccaatggctgcagctcc-atcg-------ggcaacctcaacatatagccactttctccaagctccaggaaccacttcatcct-ctgccc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3208198 222 + 4464012 aaggacaactgacaggccccaccaccct-tgccttctgacccagtttggctggtaaga--ggcagga---gaggaggaaagtgagacagaagaacttaactctcctggctcccaccccgaggttactgaggctggctgagaccct-ccaccaatggctgcagctcc-atca-------ggcaacctcaacatatagccactttctccgagctccaggaaccacttcatcct-ctgccc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106703929 222 - 115148730 agggacaaccgacaggccccaccaccctctgccttctgacccagtttggctggtaaga--ggcagga---gaggaggaaagtgagacacaggaactt-actctcctggctcccaccccgaggttactgaggctggctgagaccct-ccaccaatggctgcagctcc-atca-------ggcaacctgaacatatagccactttctccaagctccaggaaccacctcaccct-ctgccc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84320441 220 + 92844088 agggacaactgacaggccccaccactctctgccttctgacccagttcggctggtaaaa--ggcagga---gaggaggaaagtaag--agaggaactt-actctcctggctcccaccccgaggttactgaggctggctgagaccct-ccaccaatggctgcagctcc-atcg-------ggcaacctgaacatatagccactttctccaagctccaggaaccacttcatcct-ctgccc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87666806 220 - 96509753 agggacaactgacaggccccaccactctctgccttctgacccagttcggctggtaaaa--ggcagga---gaggaggaaagtaag--agaggaactt-actctcctggctcccaccccgaggttactgaggctggctgagaccct-ccaccaatggctgcagctcc-atcg-------ggcaacctgaacatatagccactttctccaagctccaggaaccacttcatcct-ctgccc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163744 220 - 13098629 agggacaactgacaggccccaccactctctgccttctgacccagttcggctggtataa--ggcagga---gaggaggaaagtaag--agaggaactt-actctcctggctcccaccccgaggttactgaggctggctgagaccct-ccaccaatggctgcagctcc-atcg-------ggcaacctgaacatatagccactttctccaagctccaggaaccacttcatcct-ctgccc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4123622 217 - 4483953 agggacaactgacaggccccaccaccctctgccttctgacccagttcggctggtaaaa--ggcagga------gaggaaagtaag--agaggaactt-actctcctggctcccaccccgaggttactgaggctggctgagaccct-ccaccaatggctgcagctcc-atcg-------ggcaacctgaacatacagccactttctccaagctccaggaaccacttcatcct-ctgccc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24753600 220 + 33263144 agggacaactgacaggccccaacaccctctgccttctgacccagttcagctggtaaaa--ggcagga---gaggaggaaagtaag--agaggaactt-actctcctggctcccaccccgaggttactgaggctggctgagaccct-ccaccaatggctgcagctcc-atcg-------ggcaacctgaacatacagccactttctccaagctccaggaaccacttcatcct-ctgccc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14034622 220 - 14338769 agggacaactgacaggccccaccactctctgccttctgacccagttcggctggtaaaa--ggcagga---gaggaggaaagtaag--agaggaactt-actctcctggctcccaccccgaggttactgaggctggctgagaccct-ccaccaatggctgcagctcc-atcg-------ggcaacctgaacatacagccactttctccaagctccaggaaccacttcatcct-ctgccc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 973305 220 + 1946073 aaggacaactgacaggctccaccaccctctgccttctgacccagtttggctggtaaaa--ggcagga---gaggaggaaagtaag--agaggaactt-actctcctggttcccaccccgaggttactgaggctggctgagaccct-ccaccaatggctgcagctcc-atga-------ggcaacctgaacatacagccactttctccaagctccaggaacctcttcatcct-ctgccc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1999508 224 - 2117846 atggacaactaacaggacccaccaccctctgccttctggcccagcttggctggtaagaggggcaggg---gaggaggaaagtgagacagaggaactt-actctcctggctcccacccccaggttactgaggctggctgagactct-ccatcaatggctgcagcttt-gtcg-------ggcaacatgaacatatagctactttctccaagctccagtaaccactttattct-ctgccc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8910997 222 - 16357246 acggacaactaacaggccccaccaccctctgccttctggcccagtttggctggtaaga--ggcagga---gaggaggaaagtgagacagaggaactt-actctcctggctcccaccccaagattactgaggctggctcagactct-ccatcaatggctgcagctcc-gtag-------ggcaacatgaacatatagccactttctccaagctccagcaaccacttcatcct-ctgccc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1394898 221 - 1807191 acggacaactaacaagccccaccaccctctcccttctggcccagttttcctggtaaga--ggcagga---gaggaggaaagtgagacagaggaactt-actctcctggcttccaccccaag-ttactgaggctggatgaggctct-ccatcaatggctgcagttct-atcg-------ggcaacatgaacatatagccactttctccaagctccagcaaacaatgcatcct-ctgccc i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5766953 216 + 108171978 AGGGACTATCGACAGGCCCTGCTACCCCCTGGCTTCTGGCTCAGTTTGGCTGGTAAGA--GGCAG--------GAGGAAAGTAAGACAGAAGAACTG-ACTCTCCTAGCTCCCA-CCTGTGGTTACTAAGGCTGGCTGAAATTCT-TCACCAATGGCTGCAGCTCC-ACCG-------GGCAACCTGAACACTTAGCCACTTTCTCCAAGCTCCAGGAACCACTTCCTCCT-CCGCCC i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5128907 216 - 6317780 aaggattatggacaggccctgccaccccctggcttctggcccagtttggctgataaga--ggcaG--------GAGTAAAGTAAGACAGAGGAACTG-ACTCTCCTGGCTCCCA-CCTGTGGTTACTAAGGCTGGCTGAGACTCT-CCACTAATGGCTGCAGCTCC-ACAG-------GGCAACCCAAACATTTAGCCACTTTCTCCAAGCTCCAGGAACCACTTCCTCTT-CTGCCC i proCoq1.NW_012136747v1 C 0 I 417 s otoGar3.GL873526 36333537 201 - 42659167 agggactgttgacaggccctgccaccctctggcttttggcccagtttgtctggta--a--ggcag--------aaggaaagtaagacagaagaacta-actctcctggctccc-----------actgaggctggctgagacttt-ccgacaacagctgcagctat-gccg-------agcaatctggacatttagctactttctctaagatccaggaaccactttc---t-ctgccc i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82858869 191 + 104043685 AGAGAAAACAGACAGGCTCTACCATCCTCTGGCTTCTGGACCAGTTTGG--------A--AGTAGGG--------------------AACAAAATTT-ACTCTCCTGGCCCTGACTAGGCAATTTTTGAGGCTGGTAAAGACTCTGCTAACA--------AGCTCT-GTCAGATGTTTGGCAATTTAAACATTTAGCCATTTTCTCTGAGCT-CGGAAATTACTTC------TTGCCC i mm10.chr15 I 764 C 0 s canFam3.chr10 46140830 206 - 69331447 ACGGACC-CCAAGAGGCTCAG--GGCTCCTGGCTTCTGGCCCTGCCTGGCTGGGAAGA--GGTAGGAAGAGAAGGGGGAGGTA----GGATGTGCTG-A--------GTTCCAACCCCGCAATCACTGGGGCTGGTTGAGATGGT-CTGCCAGTGGCCACGCTCCC-TGTG-------GACAACCTAAac----agccactttccccaggtctcagcaactgcttcctcct-caggcc i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 123912 214 + 1056298 atggactaccaaaggcctcaactgccctctgacttttga-ccagtttggttagtaaga--ggcagga--------ggagagttggatagaggaattt-atgctcttggctcctactctgcagtcactgaggttgactgagatgtt-ccaccaaaggctacagctctggtca-------ggcaacccaaac----agtcctcacctcgaggatccaggaactgcttcttcctcctgccc i dasNov3.JH570235 C 0 C 0 a score=2373322.000000 s hg38.chr22_GL383582v2_alt 131121 232 + 162811 ttcaggtctagaaggcagtaggtaacaactccctgct-actgctagcacagaagacttcac-tttcctgttggcttccccaaaccctgctcacccttt----ccagtccctttattaatcttctGCATtgttg--tcaactcagcatc-gtgaccaccctccttccaagc-tctcctctgcagatc--agaagctgagaacttccgttccagaaccctttagcagcatggttct-----gggtt---------------agagt s panTro5.chr22 28911025 232 + 37823149 ttcaggtctagaaggcagtaggtaacaactccctgct-actgctagcacagaagacttcac-tttcctgttggcttccccaaaccctgctcacccttt----ccagtccctttattaatcttctGCATtgttg--tcaactcagcatc-gtgaccaccctccttccaagc-tctcctctgcagatc--agaagctgagaacttccgttccagaaccctttagcagcatggttct-----gggtt---------------agagt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41185572 232 + 50109623 ttcaggtctagaaggcaataggtaacaactccctgct-actgctagcacagaagacttcac-tttcctgttggcttccccaaaccctgctcacccttt----ccagtccctttattaatcttctGCATtgttg--tcaactcagcatc-gtgaccaccctccttccaagc-tctcctctgcagatc--agaagctgagaacttccgttccagaaccctttagcagcatggttct-----gggtt---------------agagt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3208420 232 + 4464012 ttcaggtctagaagctagtaggtaacaactccctgct-actgctggcacagaagacttcac-tttcctcttggcttccccaaacactgctcacccttt----ccagtccctttattaatcttctGCATtgttg--tcaactcagcatc-gtcaccaccctccttccaagc-tctcctctgcagatc--agaagctgagaacttccattccagaaccctttagcagcatggttct-----gggtt---------------agagt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106704151 233 - 115148730 ttcaggtctagaaggtagtaggtaacaactccctgctaactgccagcccagaagacttcac-tttcctgttggcttccccaaaccctgctcacccttt----acagtccctttattaatcttctGCATtgttg--tcaactcagcatc-gtgaccaccctccttccaagc-tctcctctgcagatc--agaagctgagaacttccgttcccgaaccctttagcagcatggttct-----gggtt---------------acagt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84320661 233 + 92844088 ttcagggctagaaggtagtaggtaacaactccctgct-actgccaggccagaagacttcac-tttcttgttggtttccccaaaccctgctcactctgt----actgtccctttattaatcttctGCATtgttg--tcaactcagcatc-atgaccaccctccttccaagcttctcctctgcagatc--agaagctgagaactaccgttccagaaccctttaccagcatggttct-----gggtt---------------agagt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87667026 233 - 96509753 ttcagggctagaaggtagtaggtaacaactccctgct-actgccaggccagaagacttcac-tttcttgttggtttccccaaaccctgctcactctgt----actgtccctttattaatcttctGCATtgttg--tcaactcagcatc-atgaccaccctccttccaagcttctcctctgcagatc--agaagctgagaactaccgttccagaaccctttaccagcatggttct-----gggtt---------------agagt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7163964 233 - 13098629 ttcagggctagaaggtagtaggtaacaactccctgct-actgccaggccagaagacttcac-tttcttgttggtttccccaaaccctgctcactctgt----actgtccctttattaatcttctGCATtgttg--tcaactcagcatc-atgaccaccctccttccaagcttctcctctgcagatc--agaagctgagaactaccgttccagaaccctttaccagcatggttct-----gggtt---------------agagt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4123839 232 - 4483953 ttcagggctagaaggtagtaggtaacaactccctcct-actgctaggccagaagacttcac-tttcttgttggtttccccaaaccctgctcactctgt----actgtccctttattaatcttccgcaTtgttg--tcaactcagcatc-atgaccaccctccttccaagc-tctcctctgcagatc--agaagctgagaactaccgtttcagaaccctttaccagcatggttct-----gggtt---------------agagt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24753820 232 + 33263144 ttcaggactagatggtagtaggtaacaactccctgct-actgccaggccagaggacttcac-tttcttgttggtttccccaaaccctgctcaccctgt----actgtccctttattaatcttctGCATtgttg--tcaactcagcatc-atgaccaccctctttccaagc-tctcctctgcagatc--agaagctgagaactaccgttccagaaccctttaccagcatggttct-----gggtt---------------agagt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14034842 232 - 14338769 ttcagggctagaaggtagtaggtaacaactccctgct-actgctaggccagaagacttcac-tttcttgttggtttccccaaaccctgctcactctgt----actgtccctttattaatcttccgcaTtgttg--tcaactcagcatc-atgaccaccctccttccaagc-tctcctctgcagatc--agaagctgagaactaccgtttcagaaccctttaccagcatggttct-----gggtt---------------agagt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 973525 232 + 1946073 ttcagggctagaaggtagtaggtaacaactccctgct-actgccaggccagaagacttcac-tttcttgttggtttccccaaaccctgctcaccctgt----actgtccctttattaatcttctGCATtgttg--tcaactcagcatc-atgaccatcctccttccaagc-tctcctctgcagatc--agaaactgagaactaccgttccagaaccctttaccagcatggttct-----gggtt---------------agagt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1999732 223 - 2117846 ttcaggtctagaacgtagtaggtaacaacttcctgct-actgccagcccagaagacttcacttttcctgccagcttccccaaaccctgcttaccctttacaaacagtccctttattaatcttctgca---ttt--tcaactcggcatt-gcgaccatcctctctctaagc-tctcttttgcagatc--agaagcttagaactactgttccagaatcctttcctagcatca-----------------------------agg-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8911219 246 - 16357246 ttcaggtctagaatgtagtaggtaacaactccctgct-actgccagcccagaagatttcac-tttcctgccagcgtccccaaaccctgctcaccctttacaaacagtccctttattaatcttccgca---ttg--acaactcagcatt-gcgaccaccctctctctaagc-tctcctttgcagatc--ggaagcttagaactactgttccagaaccctttcctagcatcattcc-----agaaccctttcctagcatcgagg-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1395119 222 - 1807191 ttcaggtctagaacgtagtaggtaacaactccctgct-actgccagcccagaatacttcac-tttcctgccagcttccccaaaccctgctcaccctttacaaacagtccctttattaatcttctGCA---CTG--TCAGCTCAGCATT-GCGACCACCCTCTCTCTAAGC-TTTCCTTTGCAGATC--GGAAGCTTAGAACTACTGTTCCAGAACCCTTTCCTAGCATCA-----------------------------AGG-- i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5767169 236 + 108171978 TTTAGACTTAAGAGGTAG----TAACAACTCCCTGCT-ACTGCCAGCCGAGAAGACTACATGTTTCCTGTTGGTATTCCCAAGCCCTGCTCACTCTTTGCAAACAGTCCTTTTATTAATTTTTTGCAGTGCTATCTcaactcagcatccatgatcacctgctttctgggt-tcttctctgtagatc--aaaagctatgaactactgttccagaacccttttccagaatggttct-----gggtt---------------agact i micMur3.chr7 C 0 C 0 s otoGar3.GL873526 36333738 215 - 42659167 ttcaggcctaagaggtagt---taacaactccctgctaattgccaacccagaagactccatgttccttgttggtttccccaaaccctgctcaccctttgcaaacaatccttttattaatcttctGCAGtgctg--tcaactcagcatctgtga--------tttctgggc-tctcttctacagatc--aaaacttgagaacta-----acag--------cccagcatggttct-----gggtt---------------agagt i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82859060 164 + 104043685 -TTAAGCTCAGGAGGTAT----TAACAACTCCCCATG-AATACCAGGCCAGAAGATGCTAA-TCTC------------------------------------CCAGT---TTGGTTATCCTTCTGCATGGCTG--TCCA-----CATC---------CCTTTCTACATGC------TCAGCAGATC--AGGAGCTG-GAGCTGGGGCTG--------------GGAGTGGTACTACAGGGGGTT---------------AAAGT i mm10.chr15 C 0 C 0 s canFam3.chr10 46141036 195 - 69331447 -------tgagaaagtaaca--------------gct-cttgctggtccaggagacgctac-tttctcactggcagcccccacccctgctcaccctttgtaaacactccc------AA--TTCTGTtctgtgg--tcaacctgacgtc-atgaagccccgacttctaagt-cctcttctgcagatcgaagaagctggaagcttctttctgcaacctcctttccagcatgg---------------------------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 124126 209 + 1056298 ttcag--cccaggggcag----taacacctccctgct-attgctagcccaggagactccac-ttccttgttggtttccccaaatgctgctccccctttgtagacagcctcctgagtaa----CAGGTGAATAA--ACAAGTTGGCATC-ACGATTAT-----------GG-TCT------TAGATC--AGaacctgggagacgtttttccagaacccttttgcagtatggttct-----gggtt---------------agagt i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5129123 417 - 6317780 I a score=474191.000000 s hg38.chr22_GL383582v2_alt 131353 33 + 162811 -ttgcaatgagaagtgc-aagagagatttagaagg s panTro5.chr22 28911257 33 + 37823149 -tcgcaatgagaagtgc-aagagagatttagaagg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41185804 33 + 50109623 -ttgcaatgagaagtgc-aagagagatttagaagg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3208652 33 + 4464012 -ttgcaatgagaagtgc-aagagagatttagaagg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106704384 33 - 115148730 -ttgcaatgagaagtgc-aagagagatttagaaag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84320894 33 + 92844088 -ttgcaatgagaagtgc-aagagagattcagaagg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87667259 33 - 96509753 -ttgcaatgagaagtgc-aagagagattcagaagg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164197 33 - 13098629 -ttgcaatgagaagtgc-aagagagattcagaagg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124071 33 - 4483953 -ttgcaatgagaagtgc-aagagagattcagaagg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754052 33 + 33263144 -ttgcaatgagaagtgc-aagagagattcagaagg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035074 33 - 14338769 -ttgcaatgagaagtgc-aagagagattcagaagg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 973757 33 + 1946073 -ttgcaatgagaagtgc-gagagagattcagaagg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1999955 33 - 2117846 -ttgcaatgagaagcac-aagagagatttagaagg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8911465 33 - 16357246 -ttgcagtgagaagcac-aagagatatttagaagg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1395341 33 - 1807191 -TTGCAGTGAGAAGCAC-ATGAGAGATTTAGAAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 25854 33 - 704494 -TTGCAATGAGAAGCAC-AAGAGAGATTTAGAAGG i aotNan1.NW_018512389v1 N 0 C 0 s micMur3.chr7 5767405 32 + 108171978 -ttgc-aagagaaacac-aagagagatttggaagg i micMur3.chr7 C 0 I 107 s otoGar3.GL873526 36333953 33 - 42659167 -ttgcaaagagaagcac-aagagagatttgaaagg i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82859224 21 + 104043685 -------------GTACAAAGAGAGACTAGAAAG- i mm10.chr15 C 0 C 0 s canFam3.chr10 46141231 33 - 69331447 -atgcaaggagaagcac-aagagaggtttggaaga i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 124335 34 + 1056298 ttggcaaagagaagcac-gagaaagatttggaagg i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5129123 417 - 6317780 I a score=1287078.000000 s hg38.chr22_GL383582v2_alt 131386 136 + 162811 caaaataaacgtagaggttgatga--tattccctggaggtagat---gcagcacacgtggattCATAGCGGCTTCCCCATGAGC----TCACGAGAACCATTCACTAT-GACACTTCAGTATGAAATC-ATCAGG------------Aacc---------ttcccaat s panTro5.chr22 28911290 136 + 37823149 taaaataaacgtagaggctgatga--tattccctggaggtagat---gcagcacacgtggattCATAGCGGCTTCCCCATGAGC----TCACGAGAACCATTCACTAT-GACACTTCAGTATGAAATC-ATCAGG------------Aacc---------ttcccaat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41185837 136 + 50109623 caaaataaacgtagaggctgatga--tattccctggaggtagat---gcagcacacgtggattCATAGCGGCTTCCCCATGAGC----TCACGAGAACCATTCACTAT-GACACTTCAGTATGAAATC-TTCAGG------------Aacc---------ttcccaat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3208685 136 + 4464012 caaaataaacgtagaggctgatga--cgttccctggaggtagat---gcagcacacgtggattCATAGCGGCTTCCCCATGAGC----TCACGAGAACCATTCACTAT-GACACTTTAGTATGAAATC-ATCAGG------------Aacc---------ttcccaat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106704417 133 - 115148730 caaaataaacgtagaggctgatg-----tttcctggaggtagat---gcagcacacgtggattCATAGCGGCTTCCCCATGAGC----TCATGAGAACCATTCACTAT-GACACTTCAGTATGAAATC-ATCAGg------------aacc---------ttcctaat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84320927 136 + 92844088 caaaataaatgtagaggctgatga--tgttccctggaggtagat---gcagtacacgtggattcacagcggcttccccatgagc----tcatgagaaccactcactat-ggcactccagtatgaaatc-atcagg------------aacc---------ttccccat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87667292 136 - 96509753 caaaataaatgtagaggctgatga--tgttccctggaggtagat---gcagtacacgtggattcacagcggcttccccatgagc----tcatgagaaccactcactat-ggcactccagtatgaaatc-atcagg------------aacc---------ttccccat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164230 136 - 13098629 caaaataaatgtagaggctgatga--tgttccctggaggtagat---gcagtacacgtggattCACAGAGGCTTCCCCATGAGC----TCATGAGAACCACTCACTAT-GGCACTCCAGTATGAAATC-ATCAGG------------Aacc---------ttccccat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124104 136 - 4483953 caaaataaatgtagaggttgatga--tgttccctggaggtagat---gcagtacacgtggattcacagcggcttccccatgagc----tcatgagaaccactcactat-ggcactccagtatgaaatc-atcagg------------aacc---------ttccccat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754085 137 + 33263144 caaaataaatgtagaggctgatga--tgttccctggaggtagat---gcagtacacgtggattCACAGCGGCTTCCCCATGAGC----TCATGAGAACCACTCACTATGGGCACTCCAGTATGAAATC-ATCAGG------------Aacc---------ttccccat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035107 136 - 14338769 caaaataaatgtagaggctgatga--tgttccctggaggtagat---gcagtacacgtggattcacagcggcttccccatgagc----tcatgagaaccactcactat-ggcactccagtatgaaatc-atcagg------------aacc---------ttcctcat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 973790 136 + 1946073 caaaataaatgtagaggctgacga--tgttccctggaggtagat---gcagtacacgtggattcgtagcggcttccccatgagc----tcatgagaaccactcactat-ggcactccagtatgaaatc-atcagg------------aacc---------ttccccat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 1999988 133 - 2117846 tagaacaaaaatagaggttgatga--tgctccccggaggtagat----------acatggattCATAGGGGCTTCCCTATGAACTCATTCATGACAACCACACACTAT-GGCACTTCAGCAGGAAATC-ATCGGG------------Aacc---------ttcccaat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8911498 130 - 16357246 tagaataaaagtagaggttgatga--tgctccCCTGAGGTAGAT----------ACATGGATTCATAGGGGTTTCCCTATCAAC----TCATGACAACCACACACTAT-GGCACTTCAGTTGGAAATCAATCAGC------------AACC---------TTCCTAAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1395374 129 - 1807191 TAGAATAAAAGTAGAGGTTGATGA--TGCTCCCCGGAGGTAGAT----------ACATGGATTCATAGGGGCTTCCCTATGAAC----TCATAAAAACCACACACTAT-GGCACTTCAGTCGGAAATC-ATCAGG------------Aacc---------ttcccaat i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 25887 129 - 704494 TAGAATCAAAGTAGAGGTTGATGA--TGCTCCCCAGAGGTAGAT----------ACATGGATTCATAGGGGCTTCCCTATGAAC----TCATGACAACCACACACTAT-GGCACTTCAGTCGGAAATC-ATCAGG------------AAGC---------TTCCCAAT i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36333986 113 - 42659167 tagaaggaagg-agaGATTGGTAACTTGTTCTCTGGAGGGATTT---ACAGTAGACATGGAT--------------------------TCATAAGGACCA--CACTGT-GGAGCTTCGGCTGGAGACT-GTAagc------------aact---------tgcttgac i otoGar3.GL873526 C 0 I 8 s mm10.chr15 82859245 131 + 104043685 ---AAGAAAAAGAGAGGCTGA-----TATTCCCTGGAGGCAACT---GCAGCTGACACAGACTCCCAACAGCTCCCCCACAAAC----TCCCAAGAA-TATGTACTAT-GATGACC-------AGATC-ATCAAC------------AGCCTGACAGGCTTTCCCAAT i mm10.chr15 C 0 C 0 s canFam3.chr10 46141265 137 - 69331447 agaagaaaaaggagagactgatat------cctgaaaggtagctcaagcagcagacgcagatgcttggtggcttcACTGTGAGC----TCAT----------CACTGT-GGTACCGCAGCCAGAGACG-GTCAGGCAcagcttccctgacc---------ttctcaac i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 124369 62 + 1056298 --caggaaaaaaagaggttga-----tattttctggagtcagct---gcagca-----------------gcttcc---tgact----tta------------acaat------------------------------------------------------------ i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5129123 417 - 6317780 I e micMur3.chr7 5767437 107 + 108171978 I a score=1136481.000000 s hg38.chr22_GL383582v2_alt 131522 89 + 162811 tccagttctt--cc-ag-ggttgggtaaagcctt--------------------------------aattcctgtatcaaaaccattcatacc-ggaatagacaacttctcttttcctgaatgaac s panTro5.chr22 28911426 89 + 37823149 tccagttctt--cc-ag-ggttgggtaaagcctt--------------------------------aattcctgtatcaaaaccattcatacc-agaatagaaaacttctcttttcctgaatgaac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41185973 89 + 50109623 tccagttctt--cc-ag-ggttgggtaaagcctt--------------------------------aattcctgtatcaaaaccattcatacc-ggaatagaaaacttctcttttcctgaatgaac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3208821 89 + 4464012 tccagttctt--cc-ag-ggttgggtaaagcctt--------------------------------aattcctgtatcaaaaccattcatacc-ggaatagaaaacttctcttttcctgaatgaac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106704550 90 - 115148730 tccagttctt--cc-ag-ggttgggtaaagcctt--------------------------------aattcctgtatcaaaaccattcatacctggaatagaaaacttctcttttcctgaatgaac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84321063 88 + 92844088 tccagttttt--cc-ag-ggttgggtaaagcctt--------------------------------aattcatgtatcaatatcattcatacctggaatagaaaact--tcttttcctgaatgaac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87667428 88 - 96509753 tccagttttt--cc-ag-ggttgggtaaagcctt--------------------------------aattcatgtatcaatatcattcatacctggaatagaaaact--tcttttcctgaatgaac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164366 88 - 13098629 tccagttttt--cc-ag-ggttgggtaaagcctt--------------------------------aattcatgtatcaatatcattcatacctggaatagaaaact--tcttttcctgaatgaac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124240 88 - 4483953 tccagttttt--cc-ag-ggttgggtaaagcctt--------------------------------aattcctgtatcattatcattcatacctggaatagaaaact--tcttttcctgaatgaac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754222 88 + 33263144 tccagttttt--cc-ag-ggttggttaaagcctt--------------------------------aattcctgtatcaatatcattcatacatggaatagaaaact--tcttttcctgaatgaac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035243 88 - 14338769 tccagttttt--cc-ag-ggttgggtaaagcctt--------------------------------aattcctgtatcaatatcattcatacctggaatagaaaact--tcttttcctgaatgaac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 973926 88 + 1946073 tccagttttt--cc-ag-ggttgggtaaagcctt--------------------------------aattcctgtatcaacatcattcatacctggaatagaaaact--tcttttcctgaatgaac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2000121 90 - 2117846 tccagttctt--cc-ag-ggttgggtaaagcctt--------------------------------aattcttatatcaaaaccattcatacttgcgatagaaaacttctcttttcctgaatgaac i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8911628 90 - 16357246 Tccagttctt--cc-ag-ggttgggtaaagcctt--------------------------------aattcttctatcaaaaccattcatacttgcaatagaaaacttctcttttcctgaatgaac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1395503 90 - 1807191 tccagttctt--cc-ag-ggttgggtaaagcctt--------------------------------aattcttacatcaaaaccattcacacttgcaacagaaaacttctcttttcctcaatgaac i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26016 90 - 704494 Tccagttctt--cc-ag-ggttgggtaaagcctt--------------------------------aattcttatatcaaaaccattcatacttgcaatagaaaacttctcttttcctgaatgaac i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5767544 89 + 108171978 tccagttctt-cca-aa-ggttggacaaagcttc--------------------------------aattcctatatcaaaacccttcatacctggaatagaaagcttctcttttcctgaATGA-- i micMur3.chr7 I 107 C 0 s otoGar3.GL873526 36334107 81 - 42659167 tccagttcttaaca-aa-gggtggatgaagcttt--------------------------------aattcctatatcaaaacccttcatgcctagaatagaaagcttctctttt----------- i otoGar3.GL873526 I 8 C 0 s mm10.chr15 82859376 117 + 104043685 CCCGGTTCTT--CC-CA-TATTGAACCAATCCTTATTCTTATTGGTATTACAAATAAGTTTTAATAAATTCCT-TATACAAATTATTCATA----GAATACAAAGCTTCTCTTCTCCTGAACAAAC i mm10.chr15 C 0 C 0 s canFam3.chr10 46141402 80 - 69331447 ccctgttctt--cagac-agttggacaaaccctg--------------------------------aattcctctatcaaaactcttcatacctgaaatggaacgtttcccttct----------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 124431 87 + 1056298 cctatttgtg--cc-aatagttgtataaaccctt------------------------------------cttattttaaaacacttcatacctggattagaaagccttccttttcctgaatgaac i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5129123 417 - 6317780 I a score=4855138.000000 s hg38.chr22_GL383582v2_alt 131611 313 + 162811 cctgaatgatacaa-ttaaacactccttaaat--tacccagtttgaatgtgccatctgttttctactgggaccctgactgat--aAGAG-TTCTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTATTGCCACTTGGGGAATGAGAGACTTCTATTTCATGCACTATGACATAGAACAGGGACTAAAAATCCTCCCTCAAC-AAAACACTTAGAAATGTCAGACAaaatgtatagccaagttgcaagaaag-taagaaatgcccaaagtccaaaattggatgagatac--tatgaagagagttgcaggcaggtgctgggctctgaa s panTro5.chr22 28911515 313 + 37823149 cctgaatgatacaa-ttaaacactcctcaaat--tacccagtttgaatgtgccatctgttttctactgggaccctgagtgat--aAGAG-TTCTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTATTGCCACTTGGGGAATGAGAGACTTCTATTTCATGCACTATGACATAGAACAGGGACTAAAAATCCTCCCTCAAC-AAAACACTTAGAAATGTCAGACAaaatgtatagccaagttgcaagaaag-taagaaatgcccaaagtccaaaattggatgagatac--tatgaagagagttgcaggcaggtgctgggctctgaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186062 313 + 50109623 cctgaatgatacaa-ttaaacactcctcaaat--tacccagtttgaatgtgccatctgttttctactgggaccctgactgat--acGAG-TTCTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTACTGCCACTTGGGGAATGAGAgacttctatttcatgcactatgacatagaacagggactaaaaatcctccctcaac-aaaacacttagaaatgtcagacaaaatgtatagccaagttgcaagaaag-taagaaatgcccaaagtccaaaattggatgagatac--tatgaagagagttgcaggcaggtgctgggctctgaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3208910 312 + 4464012 cctgaatgatacaa-ttaaacactcctcaaat--tacccagtttgagtgtgccatctgttttctactgggaccctgactgat--aAGAG-TTTTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTATTGCCACTT-GGGAATGAGAGACTTCTATTTCATGCACTATGACATAGAACAGGGACTAAAAATCCTCCCTCAAC-AAAACACTTAGAAATGTCAGACAaaatgtatagccaagttgcaagaaag-taagaaatgcccaaagtccaaaattggacaagatac--tacgaagagagttgcaggcaggtgctgggctctgaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106704640 308 - 115148730 cctgaatgatacaa-ttaaacactcctcaaat--tacccagtttgagtgtgccatctgttttctactgggaccctgactgat--aA-AG-TTTTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTATTACCACTTGGGGAATGAGAgacttctatttcatgcactatgacgtagaacagggactaaaaatactccctcaag-aaaac----agaaatgtcagacaaaatgtatagccaagttgcaagaaag-taagaagtgcccgaagtccaaaaTTGGATGAGATAC--TATGAAGAGAGTTGCAGGCAGGTGCTGGGCTCTGAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84321151 309 + 92844088 cctgaatgatacaa-ttaaacactcctcaaat--tacccagcctgagtgtggcatctgttttctactgggaccctgac------AAGAA-TTTTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTATTATCACTTGGGGAATGAGAGACTTCTATTTCATGCACTATGACATAGAACAGGGACTAAAAATCCTCCCTCAAC-AAAACACTTAGAAATGTCAGACAagatgcacagccaagttgcaagaaac-taagaaatgcccaaagtccaaaactggatgagatac--tatgaagagagttacaggcaggtgctgggctctgaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87667516 309 - 96509753 cctgaatgatacaa-ttaaacacttctcaaat--tacccagtctgagtgtggcatctgttttctactgggaccctgac------AAGAA-TTTTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTATTATCACTTGGGGAATGAGAgacttctatttcatgcactatgacatagaacagggactaaaaatcctccctcaac-aaaacacttagaaatgtcagacaagatgcacagccaagttgcaagaaac-taagaaatgcccaaagtccaaaactggatgagatac--tatgaagagagttacaggcaggtgctgggctctgaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164454 309 - 13098629 cctgaatgatacaa-ttaaacactcctcaaat--tacccagtctgagtgtgccatctgttttctactgggaccctgac------AAGAA-TTTTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTATTATCACTTGGGGAATGAGAgacttctatttcatgcactatgacatagaacagggactaaaaatcctccctcaac-aaaacacttagaaatgtcagacaagatGCACAGCCAAGTTGCAAGAAAC-TAAGAAATGCCCAAAGTCCAAAACTGGATGAGATAC--TATGAAGAGAGTTACAGGCAGGTGCTGGGCTCTGAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124328 309 - 4483953 cctgaatgatacaa-ttaaacactcctcaaat--tacccagtctgagtgtgccatctgttttctactgggaccctgac------AAGAA-TTTTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTATTATCACTTGGGGAATGAGAgacttctatttcatgcactatgacacagaacagggactaaaaatcctccctcaac-aaaacacttagaaatgtcagacaagatgcacagccaagttgcaagaaac-taagaaatgcccaaagtccaaaactggatgagatac--tatgaagagagttacaggcaggtgctgggctctgaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754310 309 + 33263144 cctgaatgatacaa-ttaaacactcctcaaat--tacccagtctgagtgtgccatctgttttctactgggaccctgac------AAGAA-TTTTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTATTATCACTTGGGAAATGAGAgacttctatttcatgcactatgacatagaacagggactaaaaatcctccctcaac-aaaacacttagaaatgtcagacaagatgcacagccaagttgcaagaaac-taagaaatgcccaaagtccaaaactggatgagatac--tatgaagagagttacaggcaggtgctgggctctgaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035331 309 - 14338769 cctgaatgatacaa-ttaaacactcctcaaat--tacccagtctgagtgtgccatctgttttctactgggaccctgac------AAGAA-TTTTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTATTATCACTTGGGGAATGAGAGACTTCTATTTCATGCACTATGACACAGAACAGGGACTAAAAATCCTCCCTCAAC-AAAACACTTAGAAATGTCAGACAAGATGCACAGCCAAGTTGCAAGAAAC-TAAGAAATGCCCAAAGTCCAAAACTGGATGAGATAC--TATGAAGAGAGTTACAGGCAGGTGCTGGGCTCTGAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974014 309 + 1946073 cctgaatgatacaa-ttaaacactcctcaaat--tacccagtctgagtgtgccatctgttttctactgggaccctgac------AAGAA-TTTTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTATTATCACTTGGGGAATGAGAGACTTCTATTTCATGCACTATGACATAGAACAGGGACTAAAAATCCTCCCTCAAC-AAAACACTTAGAAATGTCAGACAAGATGCACAGCCAAGTTGCAAGAAAC-TAAGAAATGCCCAAAGTCCAAAATTGGATGAGATAC--TATGAAGAGAGTTACAGGCAGGTGCTGGGCTCTGAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2000211 311 - 2117846 cctgaatgatacaa-ttaagcactcctcaaag--tacccagtttgagtgtgccatccgttttctattgggaccctgactga---taGAG-TTTGTCTC--ATTCCTAG-GATTTCAGAA-TAG-ACTATTATCACTGGGGGAATGAAAGACTTTTATTTCATGCACTATGACACAGAACAGGAACTAAAAATTCTCCCTCAAC-AAAACACTTAGAAATGTCAGACAaaatgtgcagccaagtttcaagaaag-taagaaatgcccacggttcaaaataggatgagatgc--catcaagagagttgaagg-aggtgctgggctctgaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8911718 312 - 16357246 cctgaatgatacaATttaagcacttctcaaag--tacccagtttgagtgtaccatctgttttctattgggaccctgactga---taGAG-TTTTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTATTACCACTTGGGGAATGAGAGACTTTTATTTCATGCACTATGACACAGAACAGGAACTAAAAATTCTCCCTCAAC-AAAACACTTAGAAATGTCAGACAaaatgtgcagccaagttgcaagaaag-taagaaatgcccacggttcaaaacaggatgagacgc--catcaagagagttgaagg-aggtgctgggctctgaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1395593 312 - 1807191 cctgaatgatacaa-ttaagcactcctcaaag--tacccagtttgagtgtaccatctgttttccattgggaccctgactga---taGAG-TTTTTCTC--ATTCCTAG-GATTTCAGAG-TAG-ACTATTATCACTTGAGGAATGAGAGACTTTTATTTCATGCACTATGACACAGAACAGGAACTAAAAATTCTCCCTCAAC-AAAACACTTAGAAATGTCAGACAAAATGTGCAGCCAAGTTGCAAGAAAGTTAAGAAATGCCCACAGTTCAAAAGAGGATGAGACAG--CATCAAAAGAGTTGAAGG-AGGTGCTGGGCTCTGAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26106 312 - 704494 cctgaatgatacaa-ttaagcactcctcaaag--tacccagtttgagtgtactatctgttttctattgggaccctgactga---taGAG-TTTTTCTC--ATTTCTAG-GATTTCAGAG-TAG-ACTATTATCACTTGGGGAATGAGAGACTTTTATTTCATGCACTATGACACAGAACAGGAACTAAAAATTCTCCCTCAAC-AAAACACTTAGAAATGTCAGACAAAATGTGCAGCCAAGTTGCAAGAAAGTTAAGAAATGCCCACGGTTCAAAATAGGATGAGACGC--CATCAAGAGAGTTGAAGG-AGGTGCTGGGCTCTGAA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5767633 305 + 108171978 ---------TTCAa-ttaagtgctcctcaaat--tactcagcttgagtgtgccatctgttttctaccgggaccctgactga---tataG-TTTTTCTCGTATTCTTAC-GATTTCAGAG-TAG-ACTATTATCACTTGGGGAGTAAGAgacttctatttcactcaatatggcatgcaacagggactaaaatttctccctcaac-aaaacacctagaaatgtcagacaaaatgcacagttaagctgcaggaaag-taaggaatgcccagggttaaaaactggataagatat--tataaatagagtagcaagcaggtgctgggctctgaa i micMur3.chr7 C 0 I 145 s proCoq1.NW_012136747v1 5129540 315 - 6317780 cctgaATGATTCAa-ttaaatgctcctcaaat--tactcagtttgagtgtgccatctgttttctactgggaccctgactga---tataGTTTTTTTTCGTATTCTTAC-GATTTCAGGG-TAG-ACTATTATCACTTGGGGGATGAGAgacttctatttcacgcagtatggcatgcaacagggactaaaattcctccctcaac-aaaacacctagaaatgtcagacaaaatGCACAGTTAAGTTGCAGGGAAG-TAAGAAATGCCCAGGGTTAAAAACTGGATGGCATAT--TATAAATAGAGTAGCAAGCAGGTGCTGGGCTCTGAA i proCoq1.NW_012136747v1 I 417 I 223 s otoGar3.GL873526 36334188 308 - 42659167 cctaaATGATACAa-ttaaacgctcctaaaat--tatccagtttgagcatgccatctgttttctactgggaccctgactga---tacGG-TTTTTCTCGTATTCCTAT-AATTTCAGGG-TAG-ACGATTTTCACTTGGGGAGCAAGAgacttctatttcatgcaacatggcatacaacagggactaaaaatcttcactcaacaaaaacacctagaaatgtcagacaaaacacaCAGTTAAGCTGCAGCAAAG-TCAGAAATTCCT-GGGTTCAAAGTTGGATGGGATAC--------TAGAGTAATAATCAGGTGCTGAGCTCTGAA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82859493 266 + 104043685 ---TAGAAATGCAA-TTAAATGCACCTCAAGT--TAc-cagttttaatgtgctatttgttttctactgggacactgattgataGATAAA-GTACTCTC--ATTCTCAG-AATTTCAGAG-TAC-CCTATTATGAGTTGAGGAGTGAGAAACACTTATTTCATACAAAATGGTATACAACATGGACTAAA-----------AAA-GAAACAC---GGGATGTCAGACAAAGTACATAGCAACACTG---------CAAGAAATACACTAATTTCA-------------------------AGAGTAGCAATCAGGAGATAGGCAATGAA i mm10.chr15 C 0 C 0 s canFam3.chr10 46141482 299 - 69331447 cctgaATGATACAa-ttaaaacctcctcaaat--tacccagtctgagtgtgccatctgtttcctac-aggaccctgactaa---tacaG-CTCTTCTCTTATTCCTAG-GATTTCAGCG-TAGAATTATCATCACTTGGGGAGCGAGAgacttctatttcatgcaatatggcataccagagggactaaaaa---------aac-aaaatacctagaaatgtcagaaaaaatGCACAGCCAGGCTACAAG-----TATGAAATGTCCAGGGTTCAAAACTGAACGGGgggcagcctgggtggctcaacggtttggtgctgtcttc---- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 124518 308 + 1056298 cctgaatgttacaa-ttaaatgctcctcaaattatacctagtttgagtgtgcaaactgttttctaccaggaccctgactgat--aAGAG-TTCTTCTCTCATTCCTAGAGATTTCGGAGTTAG-GGTATTAGCACCAGGAGAAT--GAgacttctatctcgtgtgatatggtataccaaagggactaaaattcctccctcaac-aaaacacttagaaatacaaggcaaaatgtacaaccaagctgtaagaaagttaagaaatgcccaaggttccaaactggatgggctat--taagaag-------cagG-ATGAGCTGGG--ATGAA i dasNov3.JH570235 C 0 C 0 a score=320252.000000 s hg38.chr22_GL383582v2_alt 131924 33 + 162811 tgccaaggat---gtggggtctat--agggcttattaa s panTro5.chr22 28911828 33 + 37823149 tgccaaggat---gtggggtctat--agggcttattaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186375 33 + 50109623 tgccaaggat---gtggggtctat--agggcttattaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209222 26 + 4464012 tgccaagca----------cctat--ggggcttattaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106704948 33 - 115148730 TGTCAAGGAT---GTGGGGTTTAT--AGGGCTTATTAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84321460 36 + 92844088 tgccaaggatgtagtggggtctgt--agggcttattaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87667825 36 - 96509753 tgccaaggatgtagtggggtctgt--agggcttattaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164763 36 - 13098629 TGCCAAGGATGTAGTGGGGTCTGT--AGGGCTTATTAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124637 36 - 4483953 tgccaaggatgtagtggggtctgt--agggcttattaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754619 36 + 33263144 tgccaaggatgtagtggggtctgt--agggcttattaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035640 36 - 14338769 TGCCAAGGATGTAGTGGGGTCTGT--AGGGCTTATTAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974323 36 + 1946073 TGCCAAGGATATAGTGGGGTCTGC--AGGGCTTATTAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2000522 36 - 2117846 tgccaaggatgtgttggggtctct--aggactcattaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912030 36 - 16357246 tgccaaggatgtgttggggtctct--gagactcattaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1395905 36 - 1807191 CGCCAAGGATGTGTTGGGGTCTCT--GGGACTCATTAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26418 36 - 704494 TGCCAAGGATGTGTTGGGGTCTCT--AGGACTCATTAA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36334496 38 - 42659167 CACCAGGGATGAGGTGGGGTCTCTCACGGACTGACTAA i otoGar3.GL873526 C 0 I 2 s mm10.chr15 82859759 33 + 104043685 ---CCAGAATGTGGTACAGTCAGC--AGAACTCATTAA i mm10.chr15 C 0 I 18 s canFam3.chr10 46141781 14 - 69331447 agcccagggtgtga------------------------ i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 124826 28 + 1056298 --------GTGGGGTGGGGTCTGC--AGGCATTATTAA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I a score=22945.000000 s hg38.chr22_GL383582v2_alt 131957 5 + 162811 ccata s panTro5.chr22 28911861 5 + 37823149 ccata i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186408 5 + 50109623 ccata i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209248 5 + 4464012 ccata i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106704981 5 - 115148730 CCATA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84321496 5 + 92844088 ccacg i rheMac8.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164799 5 - 13098629 CCACG i macNem1.NW_012012688v1 C 0 C 0 s calJac3.chrUn_GL286373 2000558 5 - 2117846 ccata i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912066 5 - 16357246 ccata i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1395941 5 - 1807191 CCATA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26454 5 - 704494 CCATA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36334536 3 - 42659167 CTA-- i otoGar3.GL873526 I 2 C 0 s mm10.chr15 82859810 5 + 104043685 CCATG i mm10.chr15 I 18 I 51 s dasNov3.JH570235 124854 5 + 1056298 CTGTG i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46141795 0 - 69331447 C e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e colAng1.NW_012115588v1 974359 0 + 1946073 C e manLeu1.NW_012102031v1 14035676 0 - 14338769 C e chlSab2.chr19 24754655 0 + 33263144 C e cerAty1.NW_011999588v1 4124673 0 - 4483953 C e macFas5.chr10 87667861 0 - 96509753 C a score=31775.000000 s hg38.chr22_GL383582v2_alt 131962 9 + 162811 tggcaaagg s panTro5.chr22 28911866 9 + 37823149 tggcaaagg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186413 9 + 50109623 tggcaaagg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209253 9 + 4464012 tggcaaaga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106704986 9 - 115148730 TGGCAAAGG i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 2000563 9 - 2117846 cagcagaga i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912071 9 - 16357246 tggcaaaga i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1395946 9 - 1807191 CGGCAAAGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26459 9 - 704494 TGGCAAAGA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36334539 9 - 42659167 TAGCAAAGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82859866 9 + 104043685 AGACAACAT i mm10.chr15 I 51 C 0 s dasNov3.JH570235 124859 9 + 1056298 GGGCAAGTG i dasNov3.JH570235 C 0 I 384 e canFam3.chr10 46141795 0 - 69331447 C e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e colAng1.NW_012115588v1 974359 0 + 1946073 C e manLeu1.NW_012102031v1 14035676 0 - 14338769 C e chlSab2.chr19 24754655 0 + 33263144 C e cerAty1.NW_011999588v1 4124673 0 - 4483953 C e macNem1.NW_012012688v1 7164804 0 - 13098629 C e macFas5.chr10 87667861 0 - 96509753 C e rheMac8.chr10 84321501 0 + 92844088 C a score=2475.000000 s hg38.chr22_GL383582v2_alt 131971 1 + 162811 g s panTro5.chr22 28911875 1 + 37823149 g i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186422 1 + 50109623 g i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209262 1 + 4464012 g i gorGor5.CYUI01015375v1 C 0 C 0 s calJac3.chrUn_GL286373 2000572 1 - 2117846 g i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912080 1 - 16357246 g i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1395955 1 - 1807191 G i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26468 1 - 704494 G i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36334548 1 - 42659167 C i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82859875 1 + 104043685 G i mm10.chr15 C 0 C 0 e dasNov3.JH570235 124868 384 + 1056298 I e canFam3.chr10 46141795 0 - 69331447 C e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e colAng1.NW_012115588v1 974359 0 + 1946073 C e manLeu1.NW_012102031v1 14035676 0 - 14338769 C e chlSab2.chr19 24754655 0 + 33263144 C e cerAty1.NW_011999588v1 4124673 0 - 4483953 C e macNem1.NW_012012688v1 7164804 0 - 13098629 C e macFas5.chr10 87667861 0 - 96509753 C e rheMac8.chr10 84321501 0 + 92844088 C e nomLeu3.chr7b 106704995 0 - 115148730 C a score=391.000000 s hg38.chr22_GL383582v2_alt 131972 3 + 162811 ttt s otoGar3.GL873526 36334549 3 - 42659167 TTT i otoGar3.GL873526 C 0 I 31 s mm10.chr15 82859876 3 + 104043685 TAT i mm10.chr15 C 0 C 0 e aotNan1.NW_018512389v1 26469 0 - 704494 C e dasNov3.JH570235 124868 384 + 1056298 I e canFam3.chr10 46141795 0 - 69331447 C e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e cebCap1.NW_016107750v1 1395956 0 - 1807191 C e saiBol1.JH378157 8912081 0 - 16357246 C e calJac3.chrUn_GL286373 2000573 0 - 2117846 C e colAng1.NW_012115588v1 974359 0 + 1946073 C e manLeu1.NW_012102031v1 14035676 0 - 14338769 C e chlSab2.chr19 24754655 0 + 33263144 C e cerAty1.NW_011999588v1 4124673 0 - 4483953 C e macNem1.NW_012012688v1 7164804 0 - 13098629 C e macFas5.chr10 87667861 0 - 96509753 C e rheMac8.chr10 84321501 0 + 92844088 C e nomLeu3.chr7b 106704995 0 - 115148730 C e gorGor5.CYUI01015375v1 3209263 0 + 4464012 C e panPan2.chr22 41186423 0 + 50109623 C e panTro5.chr22 28911876 0 + 37823149 C a score=60291.000000 s hg38.chr22_GL383582v2_alt 131975 99 + 162811 tttttttt-----------ttttttttttttttttgagacggagtctc-gttctgttgcccaggctggagtgcagtggcgatatctc-ggctcactgc-aag----ctccgcctccc s panTro5.chr22 28911876 89 + 37823149 ---------------------ttttttttttttttgagacggagtctc-gctctgttgcccaggctggagtgcagtggcgatatctc-ggctcactgc-aag----ctccgcctccc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186423 94 + 50109623 -----ttt-----------agttttttttttttttgagatggagtctc-gctctgttgcccaggctggagtgcagtggcgatatctc-ggctcactgc-aag----ctccgcctccc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209263 94 + 4464012 -----ttt-----------ttttttttttttttttgagacggagtctc-gctctgttgcccaggctggagtgcagtggcgatatctc-ggctcactgc-aag----ctccgcctccc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106704995 95 - 115148730 -----ttt-----------ttttttttttttttttgggacagagtctt-gctctgtcgctaaggctggagggcagtggcgatatctc-ggctcactgcaaag----ctctgcctccc i nomLeu3.chr7b C 0 C 0 s mm10.chr15 82859879 83 + 104043685 -TTATTCTAACAAAATCAAtttatttttacttctgggaacaaggtctctattgtaatgcccaggctgg---------------cctcaaactcacagc-a----------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46141795 59 - 69331447 ------------------------------tcctagagac-----ccc-agattgagtcccacgttg---------------------ggctccctgc-atggagcctgcttctccc i canFam3.chr10 C 0 I 112 e aotNan1.NW_018512389v1 26469 0 - 704494 C e dasNov3.JH570235 124868 384 + 1056298 I e otoGar3.GL873526 36334552 31 - 42659167 I e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e cebCap1.NW_016107750v1 1395956 0 - 1807191 C e saiBol1.JH378157 8912081 0 - 16357246 C e calJac3.chrUn_GL286373 2000573 0 - 2117846 C e colAng1.NW_012115588v1 974359 0 + 1946073 C e manLeu1.NW_012102031v1 14035676 0 - 14338769 C e chlSab2.chr19 24754655 0 + 33263144 C e cerAty1.NW_011999588v1 4124673 0 - 4483953 C e macNem1.NW_012012688v1 7164804 0 - 13098629 C e macFas5.chr10 87667861 0 - 96509753 C e rheMac8.chr10 84321501 0 + 92844088 C a score=8833.000000 s hg38.chr22_GL383582v2_alt 132074 11 + 162811 gggttcacgtc s panTro5.chr22 28911965 11 + 37823149 gggttcacatc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186517 11 + 50109623 gggttcacatc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209357 11 + 4464012 gggttcacgtc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705090 11 - 115148730 aggttcacgcc i nomLeu3.chr7b C 0 C 0 e aotNan1.NW_018512389v1 26469 0 - 704494 C e mm10.chr15 82859962 0 + 104043685 C e dasNov3.JH570235 124868 384 + 1056298 I e canFam3.chr10 46141854 112 - 69331447 I e otoGar3.GL873526 36334552 31 - 42659167 I e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e cebCap1.NW_016107750v1 1395956 0 - 1807191 C e saiBol1.JH378157 8912081 0 - 16357246 C e calJac3.chrUn_GL286373 2000573 0 - 2117846 C e colAng1.NW_012115588v1 974359 0 + 1946073 C e manLeu1.NW_012102031v1 14035676 0 - 14338769 C e chlSab2.chr19 24754655 0 + 33263144 C e cerAty1.NW_011999588v1 4124673 0 - 4483953 C e macNem1.NW_012012688v1 7164804 0 - 13098629 C e macFas5.chr10 87667861 0 - 96509753 C e rheMac8.chr10 84321501 0 + 92844088 C a score=48669.000000 s hg38.chr22_GL383582v2_alt 132085 71 + 162811 attctcctgcctcagcctcccaagtagctgggactacaggcgcccaccaccgtgcctggctgattttttgt s panTro5.chr22 28911976 71 + 37823149 attctcctgcctcagcctcccaagtagctgggactacaggcgcccaccaccgtgcctggctaattttttgt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186528 70 + 50109623 attctcctgcctcagcctcccaagtagctgggactacaggcgcccaccaccgtgcctggctaa-tttttgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209368 71 + 4464012 attctcctgcctcagcctcccaagtagctgggactacaggcgcccaccaccgtgcctggctaattttttgt i gorGor5.CYUI01015375v1 C 0 C 0 s mm10.chr15 82859962 68 + 104043685 atcctcctgcctcagcattttgagta-ctgagattataagta--agccaccacatctgactGAAttttttt i mm10.chr15 C 0 I 117 e aotNan1.NW_018512389v1 26469 0 - 704494 C e dasNov3.JH570235 124868 384 + 1056298 I e canFam3.chr10 46141854 112 - 69331447 I e otoGar3.GL873526 36334552 31 - 42659167 I e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e cebCap1.NW_016107750v1 1395956 0 - 1807191 C e saiBol1.JH378157 8912081 0 - 16357246 C e calJac3.chrUn_GL286373 2000573 0 - 2117846 C e colAng1.NW_012115588v1 974359 0 + 1946073 C e manLeu1.NW_012102031v1 14035676 0 - 14338769 C e chlSab2.chr19 24754655 0 + 33263144 C e cerAty1.NW_011999588v1 4124673 0 - 4483953 C e macNem1.NW_012012688v1 7164804 0 - 13098629 C e macFas5.chr10 87667861 0 - 96509753 C e rheMac8.chr10 84321501 0 + 92844088 C e nomLeu3.chr7b 106705101 0 - 115148730 C a score=44796.000000 s hg38.chr22_GL383582v2_alt 132156 85 + 162811 atttttagtagagacagggtttcaccgtgttagccaggatggtctcga-tctcctgacctcatgatccgcccgcctcagcctccca s panTro5.chr22 28912047 86 + 37823149 atttttagtagagacagggtttcaccgtgttagccaggatggtctctattctcctgacctcatgatccgcccgcctcggcctccca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186598 85 + 50109623 atttttagtagagacagggtttcaccatgttagccaggatggtctcta-tctcctgacctcatgatccgcccgcctcggcctccca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209439 85 + 4464012 atttttagtagagacggggtttcaccgtgttagccaggatggtctcca-tctcctgacctcatgatctgcccacctcggcctccca i gorGor5.CYUI01015375v1 C 0 C 0 e aotNan1.NW_018512389v1 26469 0 - 704494 C e mm10.chr15 82860030 117 + 104043685 I e dasNov3.JH570235 124868 384 + 1056298 I e canFam3.chr10 46141854 112 - 69331447 I e otoGar3.GL873526 36334552 31 - 42659167 I e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e cebCap1.NW_016107750v1 1395956 0 - 1807191 C e saiBol1.JH378157 8912081 0 - 16357246 C e calJac3.chrUn_GL286373 2000573 0 - 2117846 C e colAng1.NW_012115588v1 974359 0 + 1946073 C e manLeu1.NW_012102031v1 14035676 0 - 14338769 C e chlSab2.chr19 24754655 0 + 33263144 C e cerAty1.NW_011999588v1 4124673 0 - 4483953 C e macNem1.NW_012012688v1 7164804 0 - 13098629 C e macFas5.chr10 87667861 0 - 96509753 C e rheMac8.chr10 84321501 0 + 92844088 C e nomLeu3.chr7b 106705101 0 - 115148730 C a score=20740.000000 s hg38.chr22_GL383582v2_alt 132241 39 + 162811 aagtgctgggattacaggcatgagccaccgcgcccggcc s panTro5.chr22 28912133 39 + 37823149 aagtgctgggattacaggcgtgagccaccgcgcccggcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186683 39 + 50109623 aagtgctgggattacaggtgtgagccaccgcacccggcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209524 39 + 4464012 aagtgctgggattacaggcgtgagccaccgtgcccggcc i gorGor5.CYUI01015375v1 C 0 C 0 s canFam3.chr10 46141966 31 - 69331447 AGGTGCTGGG-CTCTAGTACTTATCAACCACG------- i canFam3.chr10 I 112 C 0 e aotNan1.NW_018512389v1 26469 0 - 704494 C e mm10.chr15 82860030 117 + 104043685 I e dasNov3.JH570235 124868 384 + 1056298 I e otoGar3.GL873526 36334552 31 - 42659167 I e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e cebCap1.NW_016107750v1 1395956 0 - 1807191 C e saiBol1.JH378157 8912081 0 - 16357246 C e calJac3.chrUn_GL286373 2000573 0 - 2117846 C e colAng1.NW_012115588v1 974359 0 + 1946073 C e manLeu1.NW_012102031v1 14035676 0 - 14338769 C e chlSab2.chr19 24754655 0 + 33263144 C e cerAty1.NW_011999588v1 4124673 0 - 4483953 C e macNem1.NW_012012688v1 7164804 0 - 13098629 C e macFas5.chr10 87667861 0 - 96509753 C e rheMac8.chr10 84321501 0 + 92844088 C e nomLeu3.chr7b 106705101 0 - 115148730 C a score=13702.000000 s hg38.chr22_GL383582v2_alt 132280 5 + 162811 ccata s panTro5.chr22 28912172 5 + 37823149 ccata i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186722 5 + 50109623 ccata i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209563 5 + 4464012 ccata i gorGor5.CYUI01015375v1 C 0 C 0 s macFas5.chr10 87667861 5 - 96509753 ccacg i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4124673 5 - 4483953 ccaca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754655 5 + 33263144 ccaca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035676 5 - 14338769 CCACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974359 5 + 1946073 CCACA i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512389v1 26469 0 - 704494 C e mm10.chr15 82860030 117 + 104043685 I e dasNov3.JH570235 124868 384 + 1056298 I e canFam3.chr10 46141997 0 - 69331447 C e otoGar3.GL873526 36334552 31 - 42659167 I e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e cebCap1.NW_016107750v1 1395956 0 - 1807191 C e saiBol1.JH378157 8912081 0 - 16357246 C e calJac3.chrUn_GL286373 2000573 0 - 2117846 C e macNem1.NW_012012688v1 7164804 0 - 13098629 C e rheMac8.chr10 84321501 0 + 92844088 C e nomLeu3.chr7b 106705101 0 - 115148730 C a score=56551.000000 s hg38.chr22_GL383582v2_alt 132285 10 + 162811 tggcaaaggt s panTro5.chr22 28912177 10 + 37823149 tggcaaaggt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186727 10 + 50109623 tggcaaaggt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209568 10 + 4464012 tggcaaaggt i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84321501 10 + 92844088 tggcaaaggt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87667866 10 - 96509753 tggcaaaggt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164804 10 - 13098629 TGGCAAAGGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124678 10 - 4483953 tggcaaaggt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754660 10 + 33263144 tggcaaaggt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035681 10 - 14338769 TGGCAAAGGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974364 10 + 1946073 TGGCAAAGGT i colAng1.NW_012115588v1 C 0 C 0 s canFam3.chr10 46141997 10 - 69331447 TGGTGGTGGT i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512389v1 26469 0 - 704494 C e mm10.chr15 82860030 117 + 104043685 I e dasNov3.JH570235 124868 384 + 1056298 I e otoGar3.GL873526 36334552 31 - 42659167 I e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e cebCap1.NW_016107750v1 1395956 0 - 1807191 C e saiBol1.JH378157 8912081 0 - 16357246 C e calJac3.chrUn_GL286373 2000573 0 - 2117846 C e nomLeu3.chr7b 106705101 0 - 115148730 C a score=30930.000000 s hg38.chr22_GL383582v2_alt 132295 3 + 162811 ttt s panTro5.chr22 28912187 3 + 37823149 ttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186737 3 + 50109623 ttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209578 3 + 4464012 ttt i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84321511 3 + 92844088 ttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87667876 3 - 96509753 ttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164814 3 - 13098629 TTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124688 3 - 4483953 ttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754670 3 + 33263144 ttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035691 3 - 14338769 TTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974374 3 + 1946073 TTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2000573 3 - 2117846 ttt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912081 3 - 16357246 ttt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1395956 3 - 1807191 TTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26469 3 - 704494 TTT i aotNan1.NW_018512389v1 C 0 C 0 s canFam3.chr10 46142007 3 - 69331447 TCT i canFam3.chr10 C 0 C 0 e mm10.chr15 82860030 117 + 104043685 I e dasNov3.JH570235 124868 384 + 1056298 I e otoGar3.GL873526 36334552 31 - 42659167 I e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=207144.000000 s hg38.chr22_GL383582v2_alt 132298 24 + 162811 aatgaccatgcagagacagag--caa s panTro5.chr22 28912190 24 + 37823149 aatgaccatgcagagacagag--caa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186740 24 + 50109623 aatgaccatgcagagacagag--caa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209581 24 + 4464012 aatgaccatgcagagacagag--caa i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84321514 24 + 92844088 aatgaccatgaagagacagag--caa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87667879 24 - 96509753 aatgaccatgaagagacagag--caa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164817 24 - 13098629 AATGACCATGAAGAGACAGAG--CAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124691 24 - 4483953 aatgaccatgaagagacagag--caa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754673 24 + 33263144 aatgcccatgaagagatagag--caa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035694 24 - 14338769 AATGACCATGAAGAGACAGAG--CAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974377 24 + 1946073 AATGACCATGAAGAGACAGAG--CAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2000576 25 - 2117846 aatgaccatgcagaatcagag-acaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912084 25 - 16357246 aatgaccatgcagagtcagag-acaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1395959 25 - 1807191 AATGACCACGCAGAGTCATAG-ACAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26472 25 - 704494 AATGACCATGCAGAGTCAGAG-ACAA i aotNan1.NW_018512389v1 C 0 C 0 s canFam3.chr10 46142010 25 - 69331447 CATG-CTATGCAGGGCCAGAAGACAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 125252 26 + 1056298 aAAGACCACTCAGGGGCAGAAAACAA i dasNov3.JH570235 I 384 C 0 e mm10.chr15 82860030 117 + 104043685 I e otoGar3.GL873526 36334552 31 - 42659167 I e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=173062.000000 s hg38.chr22_GL383582v2_alt 132322 18 + 162811 ggcctctggcccTCT-----AGA------------------------- s panTro5.chr22 28912214 18 + 37823149 ggcctctggcccTCT-----AGA------------------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186764 18 + 50109623 ggcctctggcccTCT-----AGA------------------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209605 18 + 4464012 ggcctccggcccTCT-----AGA------------------------- i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84321538 18 + 92844088 ggcctctggcccTCC-----AGA------------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87667903 18 - 96509753 ggcctctggcccTCC-----AGA------------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164841 18 - 13098629 GGCCTCTGGCCCTCC-----AGA------------------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124715 18 - 4483953 ggcctctggcccTCC-----AGA------------------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754697 18 + 33263144 ggcctctggcccTCT-----AGA------------------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035718 18 - 14338769 GGCCTCTGGCCCTCC-----AGA------------------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974401 18 + 1946073 CGCCTCCGGCCCTCT-----AGA------------------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2000601 18 - 2117846 ggtctctggccctct-----agg------------------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912109 18 - 16357246 ggtctctggcccTCT-----AGG------------------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1395984 18 - 1807191 GGTCTCTGGCCCTCT-----AGG------------------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26497 18 - 704494 GGTCTCTGGCCCTCT-----AGG------------------------- i aotNan1.NW_018512389v1 C 0 C 0 s mm10.chr15 82860147 18 + 104043685 gaactcaggaccttc-----gga------------------------- i mm10.chr15 I 117 C 0 s canFam3.chr10 46142035 23 - 69331447 GGCCTCCAGCCCTCCTTGGGAGG------------------------- i canFam3.chr10 C 0 I 4 s dasNov3.JH570235 125278 43 + 1056298 GGCCTCCAGCCCCTT-----GTAGGTGATGGCAGTGGTGGTAGTGAGA i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36334552 31 - 42659167 I e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=105388.000000 s hg38.chr22_GL383582v2_alt 132340 12 + 162811 CAGATCAGT-ACT----- s panTro5.chr22 28912232 12 + 37823149 CAGATCAGT-ACT----- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186782 12 + 50109623 CAGATCAGT-ACT----- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209623 12 + 4464012 CAGATCAGT-ACT----- i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84321556 12 + 92844088 CAGATCAGT-ACT----- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87667921 12 - 96509753 CAGATCAGT-ACT----- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164859 12 - 13098629 CAGATCAGT-ACT----- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124733 12 - 4483953 CAGATCAGT-ACT----- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754715 12 + 33263144 CAGATCAGT-ACT----- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035736 12 - 14338769 CAGATCAGT-ACT----- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974419 12 + 1946073 CAGATCAGT-ACT----- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2000619 13 - 2117846 cagaTCAGTCACT----- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912127 13 - 16357246 CAGATCAGTCACT----- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1396002 13 - 1807191 CAGATCAGTCACT----- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26515 13 - 704494 CAGATCAGTCACT----- i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36334583 12 - 42659167 CAGTTCTGC-ACA----- i otoGar3.GL873526 I 31 C 0 s mm10.chr15 82860165 8 + 104043685 -agagcagt--------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46142062 13 - 69331447 CAGAACAGTCACT----- i canFam3.chr10 I 4 I 8 s dasNov3.JH570235 125321 18 + 1056298 AAGGACACTCACTTCACT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e micMur3.chr7 5767938 145 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=384373.000000 s hg38.chr22_GL383582v2_alt 132352 27 + 162811 TAAGGACTCTGGACAGTGTCACTTGTG s panTro5.chr22 28912244 27 + 37823149 TAAGGACTCTGGACAGTGTCACTTGTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186794 27 + 50109623 TAAGGACTCTGGACAGTGTCACTTGTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209635 27 + 4464012 TAAGGACTCTGGACAGTGTCACTTGTG i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84321568 27 + 92844088 TAAGGACTCTGGAGAGTGTCACTTGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87667933 27 - 96509753 TAAGGACTCTGGAGAGTGTCACTTGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164871 27 - 13098629 TAAGGACTCTGGAGAGTGTCACTTGTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124745 27 - 4483953 TAAGGACTCTGGAGAATGTCACTTGTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754727 27 + 33263144 TAAGGACTCTGGAGAGTGTCACTTGTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035748 27 - 14338769 TAAGGACTCTGGAGAGTGTCACTTGTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974431 27 + 1946073 TAAGGACTCTGGAGAGTGTCACTTGTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2000632 27 - 2117846 TAAGGACTCTGGACAGTGTCACTTGTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912140 27 - 16357246 TAAGGACTCTGGACAGTGGCACTTGTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1396015 27 - 1807191 TAAGGACTCTGGACAGTGTCACTTGTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26528 27 - 704494 TAAGGACTCTGGACAGTGTCACCTGTG i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5768083 27 + 108171978 TAAGGACTCTGGCCAGTGTCACTTGTG i micMur3.chr7 I 145 C 0 s otoGar3.GL873526 36334595 27 - 42659167 GGAGGACTCTGGGCAGTGCCACTTGTG i otoGar3.GL873526 C 0 I 184 s mm10.chr15 82860173 11 + 104043685 ----------------catcgctctta i mm10.chr15 C 0 I 3 s canFam3.chr10 46142083 27 - 69331447 TAAAGACTCTGGGCAGCGTCACTTGTG i canFam3.chr10 I 8 C 0 s dasNov3.JH570235 125339 27 + 1056298 TAAGGACTCTGGGTAGTGTCACTTGTG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=878208.000000 s hg38.chr22_GL383582v2_alt 132379 89 + 162811 ACTGTAATCATTTCTA-AAAGACAAC-AAATGCATTTATTATTAGGCAGTAACTAACTCATTTTCAATGAC-AAAGATAAGG----TTGTTCTTCC- s panTro5.chr22 28912271 89 + 37823149 GCTATAATCATTTCTA-AAAGATAAC-AAATGCATTTATTATTAGGCAGTAACTAACTCATTTTCAATGAC-AAAGATAAGG----TTGTTCTTCC- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186821 89 + 50109623 GCTGTAATCATTTCTA-AAAGATAAC-AAATGCATTTATTATTAGGCAGTAACTAACTCATTTTCAATGAC-AAAGATAAGG----TTGTTCTTCC- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209662 89 + 4464012 GCTGTAATCATTTCTA-AAAGATAAC-AAATGCATTTATTATTAGGCAGTAACTAACTCATTTTCAATGAC-AAAGATAATG----TTGTTCTTCC- i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84321595 87 + 92844088 GCTGTAATCATTTCTA-AAAGATAACAAAATGCCTTTATTATTAGGCAGTAACTAACTCATTTTCAATGAC-AAAGATAATG-------TTCTTCT- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87667960 87 - 96509753 GCTGTAATCATTTCTA-AAAGATAACAAAATGCCTTTATTATTAGGCAGTAACTAACTCATTTTCAATGAC-AAAGATAATG-------TTCTTCT- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164898 87 - 13098629 GCTGTAATCATTTCTA-AAAGATAACAAAATGCCTTTATTATTAGGCAGTAACTAACTCATTTTCAATGAC-AAAGATAATG-------TTCTTCT- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124772 90 - 4483953 GCTGTAATCATTTCTA-AAAGATAACAAAATGCCTTTATTATTAGGCAGTAACTAACTCATTTTCAATGAC-AAAGATAATG----TTCTTCTTCT- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754754 87 + 33263144 GCTGTAATCATTTCTA-AAAGATAACAAAATGCCTTTATTGTTAGGCAGTAACTAACTCATTTTCAATGAC-AAAGATAACG-------TTGTTCT- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035775 90 - 14338769 GCTGTAATCATTTCTA-AAAGATAACAAAATGCCTTTATTATTAGGCAGTAACTAACTCATTTTCAATGAC-AAAGATAATG----TTCTTCTTCT- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974458 90 + 1946073 GCTGTAATCATTTCTA-AAAGATAACAAAATGCCTTTATTATTAGGCAGTAACCAACTCATTTTCAATGAC-AAAGATAATG----TTGTTCTTCT- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2000659 88 - 2117846 GCTGTAATCATTTCtataaaaataaaaaaatatatttatCATTAAGCAGTAACTAACTGATTTTCAATGAC-AAAGAAAA-------TGTTCTTTC- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912167 91 - 16357246 GCTGTCATCATTTCTATAAAGATAACAAAATATATTTATCATTAAGCAGTAACTAACTCATTTTCAATGAC-AAAGAAAACG----TTGTTCTTCC- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1396042 87 - 1807191 GCTGTAATCATTTCTATAAAGATAACAAAATATATTTATCATTAAGCAG----TAACTCATTTTCAATGAC-AAAGAAAATA----TTGTTCTTCC- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26555 88 - 704494 GCTGTATTCATTTCTATAAAGATAACAAAATATATTTATCATTAAGCAGTAACTAACTCATTTTCAATGAC-AAAGAAAA-------TGTTCTTCC- i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5768110 90 + 108171978 GCTGAAATAATTTCTATAAAGATGCCAAAA--CATTTACTTTTAGGCAGTCACCAATTCACTTTCAATGACGAAAGATAATG----TGATTCTTTC- i micMur3.chr7 C 0 I 1 s mm10.chr15 82860187 64 + 104043685 actg-agccatctctc------------------------------cagcccTCAATTTATTTTCAACAGC-AAAAATAATGAATGCTGTTCTTTT- i mm10.chr15 I 3 I 10 s canFam3.chr10 46142110 85 - 69331447 GCTAGAATCATTTCTATAAAGATGACAAAATATATTTATTCTTAGGCCGTCACCAACTCATTTTCAGCAAC-AAA---AATG-------TTCTTTC- i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 125366 92 + 1056298 GCTGAAATAATTTCTATAAAAATGACAAAATTTACTTACTCTTAAGCAGTCACCAACACATTTTCAACAGC-AAAGATAATA----TTGTTCTTTCC i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36334622 184 - 42659167 I e proCoq1.NW_012136747v1 5129855 223 - 6317780 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=687501.000000 s hg38.chr22_GL383582v2_alt 132468 65 + 162811 TCAA---CTGACCC--AACTGCCTATTCTCAAAGAAAACCATGAT-----------CATCCCAAG---------------------------------CA-AGAAGC-TTTAGAAT s panTro5.chr22 28912360 65 + 37823149 TCAA---CTGACCC--AACTGCCTATTCTCAAAGAAAACCATGAT-----------CATCCCAAG---------------------------------CA-AGAAGC-TTTAGAAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186910 65 + 50109623 TCAA---CTGACCC--AACTGCCTATTCTCAAAGAAAACCACGAT-----------CATCCCAAG---------------------------------CA-AGAAGC-TTTAGAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209751 65 + 4464012 TCAA---CTGACCC--AACTGCCTATTCTCAAAGAAAACCATGAT-----------CATCCCAAG---------------------------------CA-AGAAGC-TTTAGAAT i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84321682 60 + 92844088 TCAA---CTGACCC--AACTGCCTATTCTC-AAGAAAACCATGAT-----------CGTCC-------------------------------------CA-AGAAGT-TTTAGAAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668047 60 - 96509753 TCAA---CTGACCC--AACTGCCTATTCTC-AAGAAAACCATGAT-----------CGTCC-------------------------------------CA-AGAAGT-TTTAGAAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7164985 60 - 13098629 TCAA---CCGACCC--AACTGCCTATTCTC-AAGAAAACCATGAT-----------CGTCC-------------------------------------CA-AGAAGT-TTTAGAAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124862 60 - 4483953 TCAA---CTGACCC--AACTGCCTATTCTC-AAGAAAACCATGAT-----------CGTCC-------------------------------------CA-AGAAGT-TTTAGAAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754841 60 + 33263144 TCAA---CTGACCC--AACTGCCCATTCTC-AAGAAAACCATGAT-----------CGTCC-------------------------------------CA-AGAAGT-TTTAGAAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035865 58 - 14338769 TCAA---CTGACCC--AACTGCCTAT--TC-AAGAAAACCATGAT-----------CGTCC-------------------------------------CA-AGAAGT-TTTAGAAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974548 60 + 1946073 TCAA---ATGACCC--AACTGCCTATTCTC-AAGAAAACCATGAT-----------CGTCC-------------------------------------CA-AGAAGT-TTTAGAAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2000747 66 - 2117846 TCAA---ATGACCC--AACTGCCTACTCTCAAAGAAAGCCATGGT-----------CATCCCAAG---------------------------------CA-AGAAGCTTTTAGAAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912258 65 - 16357246 TCAA---ATGACCC--AACTGCCTACTCTCAAAGAAAGCCATGGT-----------CATCCCAAG---------------------------------CA-AGAAGC-TTTAGAAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1396129 65 - 1807191 TCAA---ATGACCC--AACTGCCTACTCTCAAAGAAAGCCATGGT-----------CATCCCAAG---------------------------------CA-AGAAGC-TTTAGAAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26643 65 - 704494 TCAA---ATGACCC--AACTGCGTACTCTCAAAGAAAGCCATGGT-----------CATCCCAAG---------------------------------CA-AGAAGC-TTTAGAAT i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5768201 65 + 108171978 TCAA---TTGACCC--AACTTTCTGTCCTCAAGGAAAACCACAAT-----------CATCCCAAG---------------------------------CA-AGAAGT-TTTAGAAT i micMur3.chr7 I 1 C 0 s proCoq1.NW_012136747v1 5130078 65 - 6317780 TCAA---TTGACTC--AACTTTCTATCCTCAAGGAAAACCACAAT-----------CATCCCAAG---------------------------------CA-AGATGC-TTTAGAAT i proCoq1.NW_012136747v1 I 223 I 192 s mm10.chr15 82860261 69 + 104043685 TCAGTGTCTTACCCTGAACTACTACTTTATAGAGTAAATTACAAT-------------TCATATA---------------------------------CATATATGt-tttggttt i mm10.chr15 I 10 C 0 s canFam3.chr10 46142196 76 - 69331447 TCAA---CTGACCC--AACTTCCCATCCTCCAGGAAAACCAAAATCAGCTCTCAGCCATCCTAAG---------------------------------CA-AGAAGC-TTTAGAAT i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 125458 97 + 1056298 TCAA---GTGCCCC--AACCTCCCAATCTCAAGGAAAACCATGAT-----------CATCTCTCAGATATCTTTTTTTTTCTTTTTTCTCAGATATCTTA-AGAAGT-TTTGGAA- i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36334622 184 - 42659167 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=24773.000000 s hg38.chr22_GL383582v2_alt 132533 3 + 162811 AAC s panTro5.chr22 28912425 3 + 37823149 AAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186975 3 + 50109623 AAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209816 3 + 4464012 AAC i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84321742 3 + 92844088 AAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668107 3 - 96509753 AAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165045 3 - 13098629 AAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124922 3 - 4483953 AAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754901 3 + 33263144 AAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035923 3 - 14338769 AAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974608 3 + 1946073 AAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2000813 3 - 2117846 AAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912323 3 - 16357246 AAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1396194 3 - 1807191 AAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26708 3 - 704494 AAG i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5768266 3 + 108171978 AAC i micMur3.chr7 C 0 I 175 s canFam3.chr10 46142272 3 - 69331447 AAT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 125555 1 + 1056298 --C i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82860330 0 + 104043685 C e otoGar3.GL873526 36334622 184 - 42659167 I e proCoq1.NW_012136747v1 5130143 192 - 6317780 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=1625840.000000 s hg38.chr22_GL383582v2_alt 132536 201 + 162811 CCCAAACTGACCTTT------CACTTTGA--CTCT-----GT--ATTTACCATG--CCA-CCTCATCATGACACTACTCTC---CTTCCTGTATTTGTCCTTTCCCATTCCATTCT-CGTCACTGTCATTTTCATCTTTCTTGGGCTAGAATAACA--CCTGAAAAGTTCTCTT---------------------------------------------------------------------TCCCAGTAC---------------------TTTCT-----------------------------------------------------------------------------------TTTGCTTAACTGCCATTTTGACA-------CCATCACACCCCCC s panTro5.chr22 28912428 201 + 37823149 CCCAAACTGACCTTT------CACTTTGA--CTCT-----GC--ATTTACCATG--CTA-CCTCATCATGACACTACTCTC---CTTCCTGTATTTGTCCTTTCCCATTCCATTCT-CGTCACTGTCATTTTCATCTTTCTTGGGCTAGAATAACA--CCTGAAAAGTTCTCTT---------------------------------------------------------------------TCCCAGTAC---------------------TTTCT-----------------------------------------------------------------------------------TTTGCTTAACTGCCATTTTGACA-------CCATCACACCCCCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41186978 201 + 50109623 CCCAAACTGACCTTT------CACTTTGA--CTCT-----GC--ATTTACCATG--CTA-CCTCATCATGACACTACTCTC---CTTCCTGTATTTGTCTTTTCCCATTCCATTCT-CGTCACTGTCATTTTCATCTTTCTTGGGCTAGAATAACA--CCTGAAAAGTTCTCTT---------------------------------------------------------------------TCCCAGTAC---------------------TTTCT-----------------------------------------------------------------------------------TTTGCTTAACTGCCATTTTGACA-------CCATCACACCCCCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3209819 201 + 4464012 CCCAAACAGACCTTT------CACTTTGA--CTCT-----GT--ATTTACCATG--CTA-CCTCATCATGACACTACTCTC---CTTCCTGTATTTGTCCCTTCCCATTCCATCCT-CGTCACTGTCATTTTCATCTTTCTTGGGCTAGAATAACA--CCTGAAAAGTTCTCTT---------------------------------------------------------------------TCCCAGTAC---------------------TTTCT-----------------------------------------------------------------------------------TTTGCTTAACTGCCATTTTGACA-------CCATCACACCCCCC i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84321745 201 + 92844088 CCCAAACTAACCTTT------CACTTTGA--CTCT-----GT--ATTTACCATG--CTACCCTCATCATGACACTACTCTC---TTTCCTGTATTTGTCCTTTCCCATTCCATCCT-CGTCACTGTCATTTTCATCTTTCTTGGGCTAGAATAACA--CTTGAAAAGTTCTCTT---------------------------------------------------------------------TCCCAGTAC---------------------CTTCT-----------------------------------------------------------------------------------TTTCTTTACCTGCCATTTTGACA-------CCATCACACTCCC- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668110 200 - 96509753 CCCAAACTAACCTTT------CACTTTGA--CTCT-----GT--ATTTACCATG--CTA-CCTCATCATGACACTACTCTC---TTTCCTGTATTTGTCCTTTCCCATTCCATCCT-CGTCACTGTCATTTTCATCTTTCTTGGGCTAGAATAACA--CTTGAAAAGTTCTCTT---------------------------------------------------------------------TCCCAGTAC---------------------CTTCT-----------------------------------------------------------------------------------TTTCTTTACCTGCCATTTTGACA-------CCATCACACTCCC- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165048 200 - 13098629 CCCAAATTAACCCTT------CACTTTGA--CTCT-----GT--ATTTACCATG--CTA-CCTCATCATGACACTACTCTC---TTTCCTGTATTTGTCCTTTCCCATTCCATCCT-CGTCACTGTCATTTTCATCTTTCTTGGGCTAGAATAACA--CTTGAAAAGTTCTCTT---------------------------------------------------------------------TCCCAGTAC---------------------CTTCT-----------------------------------------------------------------------------------TTTCTTTACCTGCCATTTTGACA-------CCATCACACTCCC- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4124925 200 - 4483953 CCCAAACTAACCTTT------CACTTTGA--CTCT-----GT--ATTTACCATG--CTA-CCTCATCATGACACTACTCTC---TTTCCTGTATTTGTCCTTTCCCATTCCATCCT-CGTCACTGTCATTTTCATCTTTCTTGAGCTAGAATAACA--CTTGAAAAGTTCTCTT---------------------------------------------------------------------TCCCAGTAC---------------------CTTCT-----------------------------------------------------------------------------------TTTCTTTACCTGCCATTTTGACA-------CCATCACACTCCC- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24754904 195 + 33263144 CCCAAACTAACCTTT------CACTTTGA--CTCT-----GT--ATTTACCATG--CTA-CCTCATCATGACACTACTCTC---TTTCCTGTATTTGTCCTTTCCCATTCCATCCT-CGTCA--GTCATTTTCATCTTTCTTGGGCTAGAATAACA--CTTGAAAAGTTCTCTT---------------------------------------------------------------------TCCCAGTAC------------------------CT-----------------------------------------------------------------------------------TTTCTTTACCTGCCATTTTGACA-------CCATCACACTCCC- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14035926 200 - 14338769 CCCAAACTAACCTTT------CACTTTGA--CTCT-----GT--ATTTACCATG--CTA-CCTCATCATGACACTACCCTC---CTTCCTGTATTTGTCCTTTCCCATTCCATCCT-CGTCACTGTCATTTTCATCTTTCTTGGGCTAGAATAACA--CTTGAAAAGTTCTCTT---------------------------------------------------------------------TCCCAGTAC---------------------CTTCT-----------------------------------------------------------------------------------TTTCTTTACCTGCCATTTTGACA-------CCATCATACTCCC- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974611 200 + 1946073 CCCAAACTGACCTTT------CACTTTGA--GTCT-----GT--ATTTACCATG--CTA-CCTCATCATGATACTACTCTC---TTTCCTGTATTTGTCCTTTCCCATTCCATCCT-CGTCACTGTCATTTTCATCTTTCTTGGGCTAGAATAACA--CTTCAAAAGTTCTCTT---------------------------------------------------------------------TCTCAGTAC---------------------CTTCT-----------------------------------------------------------------------------------TTTCTTTACCTGCCATTCTGACA-------CCATCACACTCCC- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2000816 195 - 2117846 CCCAAATTAACCTTG------CAGTTTGA--CATT-----GT--ATTCACCAGG--CTA----CATCATGACATTACTCT-----TTACTGTATTTGCCCTTTCCCACTCCATCCT-CATCACTATCATCTTCATCTTTCTTGAGCTAGAATAACA--CCTGAAACATTCTCTT---------------------------------------------------------------------TCTCAGTAC---------------------CTTCT-----------------------------------------------------------------------------------TTTCTTTACCTAACATTTTGACA-------CCATCACACTCAC- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912326 197 - 16357246 CCCAAATTAACCTTT------CAGTTTGA--CATT-----GT--ATTCATCATG--CTA-CCTCATCATGACAGTACTCT-----TTACTGTATTTGCCCTTTCCCACTCCATCCT-CGTCACTATCATCTTCATCTTTCTTGTGCTAGAATAACA--CCTGCAACATTCTCTT---------------------------------------------------------------------TCTCAGTAC---------------------CTTCT-----------------------------------------------------------------------------------TTTCTTTACC-GGTATTTTGACA-------CCATCACACTCCC- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1396197 182 - 1807191 CCCAAATTAACCTTT------CAGTTTGA--CTTTGTACAGT--ATTCGTCATG--CTA-CCTCATCATGACACTACTCT-----TTACTGTATTTGCCCTTTCCCACTC----------------------CATCTTTCTTGTGCTACAGTAACA--CCTGAAACATTCTCTT---------------------------------------------------------------------TCTCGGTAC---------------------CTTCT-----------------------------------------------------------------------------------TTTCTTTACCTGGCATTTTGACA-------CCATCACACTCCC- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26711 198 - 704494 CCCAAATTAACCTTT------CAGTTTGA--CTTT-----GT--ATTCACCACG--CTA-CCTCATCATGATATTACTCT-----TTAGTGTATTTGCCCTTTCCCACTCCATCCT-GGTCACTATCATCTTCATCTTTCTTGTGCTAGAATAAAA--CCTGAAATATTCTCTT---------------------------------------------------------------------TCTCAGTAC---------------------CTTCT-----------------------------------------------------------------------------------TTTCTTTACCTGGCATTTTGACA-------CCATCACACTCCC- i aotNan1.NW_018512389v1 C 0 C 0 s mm10.chr15 82860330 378 + 104043685 -------tgttttttttgttgttgttttt--tttt-----tt--gcttACAATGCACTG-TCCAATCACAACCCTGTTCCCTGTTCTTTTCTATTTGTTCTATCC---TCTGGTTC-TGAGATGGCCACTTCCATC-TTCCTGGTATAGAAAAATGTCCCCAAGGAGTTCTCTGCTTCAGCATTGATCACAGGAACAATAGAATAAGATTTCCTGagctgggcatggtgtcgtgcgcctttaatcccagcactcaggaggcagagac--aggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctacacagagaaatcctgtctcaaaaaaaaaaaaTTCCTCCACTTGCTACTTTGACAAT--GTGATATCACATTCGC- i mm10.chr15 C 0 C 0 s canFam3.chr10 46142275 216 - 69331447 CCCAAACTCATTGCC------TCCTGTAACCCTTT-----CT--CTTCAAGATG--TCA-CCTAATCCTGCTCCTTCTCCA---CTTCCTGCATTTGCCTGTTACCTCTCTAGCCTCCCTCACTGCCGCTTCCATCTTTCTTGGG-GAAAACAACAGCTCCGCAAGTTTCTTTC---------------------------------------------------------------------TCCCTGCAC--------CAGTCACCTGGAACAGCT-----------------------------------------------------------------------------------TTTCTTCAA-TGAAGTCATGACA-------GTGTTCCCCTCCC- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 125556 216 + 1056298 CCAAAACTCATCTTT------TACTTTAA--CTCT-----TTACATTTAAGATG--TGA-GCAAGTCATG--CCTTCTTTA---TTTCTTGTATTTGCCTGTTACCTCTCCATCTT-TGTCACTGCC-TATTAATCTTTCTTGAACCAGAAGAT----CTAAAAAAATTCTCCT---------------------------------------------------------------------TCCCAGCAC-----------------CAGTCTTCT---------------------------------------------------------------------------GGAAGACTATTTTCCCCCTGCCATTTAGATAACTGATTACCTCATCCTCCC- i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36334622 184 - 42659167 I e proCoq1.NW_012136747v1 5130143 192 - 6317780 I e micMur3.chr7 5768269 175 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=1142524.000000 s hg38.chr22_GL383582v2_alt 132737 119 + 162811 CATAGGCCCTGAAGCCCTGTGACATCTT-CCCAACACAATTTCTGCTTCTCCCCACCCT-CTCAAACAAGCCTGCTC--AGCCCCC--------------------------------------------------------------------------------TTTGTGCCATCGGCCCACTCTCACCTTGGTCTCAACT s panTro5.chr22 28912629 119 + 37823149 CATAGGCCCTGAAGCCCTGTGACATCTT-CCCAACACAATTTCTGCTTCTCCCCACCCT-CTCAAACAAGCCTGCTC--AGCCCCC--------------------------------------------------------------------------------TTTGTGCCATCGGCCCACTCTCACCTTGGTCTCAACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187179 119 + 50109623 CATAGGCCCTGAAGCCCTGTGACATCTT-CCCAACACAATTTCTGCTTCTCCCCACCCT-CTCAAACAAGCCTGCTC--AGCACCC--------------------------------------------------------------------------------TTTGTGCCATCGGCCCACTCTCACCTTGGTCTCAACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210020 119 + 4464012 CATAGGCCCTGAAGCCCTGTGACATCTT-CCCAACACAATTTCTGCTTCTCTCCACCCT-CTCAAACAAGCCTGCTC--AGCCCCC--------------------------------------------------------------------------------TTTGTGCCATCGGCCCACTCTCACCTTGGTCTCAACT i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84321946 157 + 92844088 TATAGGCCCTGAAGCCCTGTGACATCTT-CCCA--ACAATTTCTGCTCCTCCCCACCCT-CTCAAATAAGCCTGCTC--CACCCTCTTTGTGCCATC----------------------------------------AGCCCACTCTCAACTTGGTCTCAGCCCTGTTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668310 157 - 96509753 TATAGGCCCTGAAGCCCTGTGACATCTT-CCCA--ACAATTTCTGCTCCTCCCCACCCT-CTCAAATAAGCCTGCTC--CACCCTC----------------------------------------TTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAGCCCTGTTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165248 197 - 13098629 TATAGGCCCTGAAGCCCTGTGACATCTT-CCCA--ACAATTTCTGCTCCTCCCCACCCT-CTCAAATAAGCCTGCTC--CACCCTCTTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAGCCCTGTTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAGCCCTGTTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125125 158 - 4483953 TATAGGCCCTGAAGCCCTGTGACATCTT-CCCA--ACGATTTCTGCTCCTCCCCACCCTCCTCAAATAAGCCTGCTC--CACCCTCTTTGTGCCATC----------------------------------------AGCCCACTCTCACCTTGGTCTCAGCCCTGTTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755099 117 + 33263144 TATAGGCCCTGAAGCCCTGTGACATCTT-CCCA--ACAATTTCTGCTCCTCCCCACCCT-ATCAAATAAGCCTGCTC--CACCCTC--------------------------------------------------------------------------------TTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036126 117 - 14338769 TATAGGCCCTGAAGCCCTGTGACATCTT-CCCA--ACAATTTCTGCTCCTCCCCACCCT-CTCAAATAAGCCTGCTC--CACCCTC--------------------------------------------------------------------------------TTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974811 117 + 1946073 TATAGGCCCTGAAGCCCTGTGACATCTT-CCCA--ACAATTTCTGCTCCTCCCCACCGT-CTCAAATAAGCCTGCTT--CACCCTC--------------------------------------------------------------------------------TTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001011 119 - 2117846 CACAGGCCCTGAAAGCCCATGACATCTT-CCCAACACAATTTCTGCTCCTCCCCACCCT-CTCAAACAAGCCTGCTC--AGCCCCC--------------------------------------------------------------------------------TCTGTGCCACTGGCCCACTCTCACCTTGATCTCAGTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912523 119 - 16357246 CACAGGCCCTGAATGCCCATGACATCTT-CCCAACACAATTTCTGCTCCTCCCCACCCT-CTCAAACAAGCCTGCTC--AGCCCGC--------------------------------------------------------------------------------TCTGTGCCACTGGCCCACTCTCACCTTGGTCTCAACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1396379 107 - 1807191 CACAGGACCTGAAAGCCCATGACATCTT-CCCAACACAATTTCTGCTCCTCCCCAACCT-CTCAAACAAGCCTGCTC--AGCCC-C--------------------------------------------------------------------------------TTTGTGCCACTAGCCCACTCTCACC-----------T i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 26909 119 - 704494 CACAGGCCCTGAAAGCCCATGACATCTT-CCCAACACAATTTCTGCTCCTCCCCACTCT-CTCAAACAAGCCTGCTC--AGCCCCC--------------------------------------------------------------------------------TCTGTGCCACTGGCCCACTCTCACCTTGGTCTCAACT i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5768444 116 + 108171978 CATGGGCCTTGAAGCCCTCTGGCATCTT-CCCAATACAGTTTCTGCTCCTCCCTACCCT-CTCAAACAAGCCTTTCC--AGTCCCC--------------------------------------------------------------------------------TCTGTGCTCT---CTCACTTTCACCTTGGTCTCAACT i micMur3.chr7 I 175 C 0 s proCoq1.NW_012136747v1 5130335 115 - 6317780 CATGGGCCTTGAAGCCCTCTGGCATCTT-CCCAACACAATTTCTGCTCCTCCCTACCCT-CTCACACAAGCCTTCCC--AGTCCCC--------------------------------------------------------------------------------TCTGTGCTTT---CTCACTTTCACCTTGGTCTCAAC- i proCoq1.NW_012136747v1 I 192 C 0 s mm10.chr15 82860708 95 + 104043685 CACAGTCATGGATAGTCTATGGCATCTT-CCTA------TTTCTGCTGTTCC------T-ACCCAACAATCTTGTTCAAAAATGCC--------------------------------------------------------------------------------TCTGAGCCAT----------TACCCTTCGTATT---- i mm10.chr15 C 0 C 0 s canFam3.chr10 46142491 91 - 69331447 CACATGCCCAGAAGCCCTCTGGCATTGTACCCA-----------------CCCGGTATG-CTCAAATAGACCTGTTT--GGTCCCC--------------------------------------------------------------------------------TCCAGGCCACC-GCCTGTTCTCATCA----------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 125772 89 + 1056298 CCCATGCCCTGAAGTCTCTTG-CATCTT-CTCAACACAGTTCTTGCT-------------CCCAAA----CCTGCTC--AGTCCCC--------------------------------------------------------------------------------TCTCTACCACAGCCCTGCTCTTAC------------- i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36334622 184 - 42659167 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=73391.000000 s hg38.chr22_GL383582v2_alt 132856 5 + 162811 TGGAG s panTro5.chr22 28912748 5 + 37823149 TGGAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187298 5 + 50109623 TGGAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210139 5 + 4464012 TGGAG i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322103 5 + 92844088 TGGAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668467 5 - 96509753 TGGAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165445 5 - 13098629 TGGAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125283 5 - 4483953 TGGAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755216 5 + 33263144 TGGAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036243 5 - 14338769 TGGAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974928 5 + 1946073 TGGAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001130 5 - 2117846 TGGAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912642 5 - 16357246 TGGAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1396486 5 - 1807191 TGGAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 27028 5 - 704494 TGGAG i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5768560 5 + 108171978 TGGAG i micMur3.chr7 C 0 I 85 s proCoq1.NW_012136747v1 5130450 5 - 6317780 TGGAG i proCoq1.NW_012136747v1 C 0 I 3 s otoGar3.GL873526 36334806 5 - 42659167 tgCAA i otoGar3.GL873526 I 184 C 0 s canFam3.chr10 46142582 5 - 69331447 CAAAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 125861 4 + 1056298 -GAAG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82860803 0 + 104043685 C e nomLeu3.chr7b 106705101 0 - 115148730 C a score=403769.000000 s hg38.chr22_GL383582v2_alt 132861 33 + 162811 ---C---CTTTTAAGCATCCCCAGGCCCATAAATTCCTT s panTro5.chr22 28912753 33 + 37823149 ---C---CTTTTAAGCATCCCCAGGCCCATAAATTCCTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187303 33 + 50109623 ---C---CTTTTAAGCATCCCCAGGCCCATAAATTCCTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210144 36 + 4464012 ---CCTTCTTTTAAGCATCCCCAGGCCCATAAATTCCTT i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322108 36 + 92844088 ---CCTTCTCTTAAGCATCCCCAGGCCCATAAATTCCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668472 36 - 96509753 ---CCTTCTCTTAAGCATCCCCAGGCCCATAAATTCCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165450 36 - 13098629 ---CCTTCTCTTAAGCATCCCCAGGCCCATAAATTCCTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125288 36 - 4483953 ---CCTTCTCTTAAGCATCCCCAGGCCCATAAATTCCTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755221 36 + 33263144 ---CCTTCTCTTAAGCATCCCCAGGCCCATAAATTCCTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036248 36 - 14338769 ---CCTTCTCTTAAGCATCCCCAGGCCCATAAATTCCTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974933 36 + 1946073 ---CCTTCTCTTAAGCATCCCCAGGCCCATGAATTCCTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001135 36 - 2117846 ---CCTTCTCTCACGCATCCCCAGGACCATAAATCCCTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8912647 36 - 16357246 ---CCTTCTCTTAGGCATCCCCAGGACCACAAATCCCTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1396491 36 - 1807191 ---CCTTCTCTTATGCATCCCCAGGACCATAAATCCCTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 27033 36 - 704494 ---CCTTCTCTTACTCATCCCCAGGACCATAAATCCCTT i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5130458 33 - 6317780 ------TCTCTAAAGCATCCCTAGGTCTATAAATTCCTT i proCoq1.NW_012136747v1 I 3 I 49 s otoGar3.GL873526 36334811 33 - 42659167 ------TTTCTGAAGCATCCGTAGGTCTATAAATTCCTT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82860803 33 + 104043685 ------TCTCTGAAACATCCTTGAGTCCAGAAATGCCCT i mm10.chr15 C 0 C 0 s canFam3.chr10 46142587 36 - 69331447 ---CCTTCTCTGAAGCATCCCTGGGTCCAAACATTCCTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 125865 25 + 1056298 AAGACTTCTCTAAAACA--------------AATCCCTT i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5768565 85 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=224647.000000 s hg38.chr22_GL383582v2_alt 132894 23 + 162811 CTTGCCACATGA----GATCATATGGT s panTro5.chr22 28912786 23 + 37823149 CTTGCCACATGA----GATCATATGGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187336 23 + 50109623 CTTGCCACATGA----GATCATATGGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210180 23 + 4464012 CTTGCCACATGA----GATCATATGGT i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322144 23 + 92844088 CTTGCCATGTGA----GATCATATAGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668508 23 - 96509753 CTTGCCATGTGA----GATCATATAGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165486 23 - 13098629 CTTGCCATGTGA----GATCATATAGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125324 23 - 4483953 CTTGCCATGTGA----GATCATATAGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755257 23 + 33263144 CTTGCCATGTGA----GATCATATAGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036284 23 - 14338769 CTTGCCATGTGA----GATCATATAGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974969 23 + 1946073 CTTGCTATGTGA----GATCATATAGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001171 23 - 2117846 CTTGCCATGTGA----GGTCACAGAGT i calJac3.chrUn_GL286373 C 0 I 304 s saiBol1.JH378157 8912683 23 - 16357246 CTTGCCATGTGA----GGTCATATAGT i saiBol1.JH378157 C 0 I 294 s cebCap1.NW_016107750v1 1396527 23 - 1807191 CTTGCCATGTGA----GGTCATATAGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 27069 23 - 704494 CTTGCCATGTGA----GGTCATATAGT i aotNan1.NW_018512389v1 C 0 I 307 s otoGar3.GL873526 36334844 27 - 42659167 CTTGACATGTCAGGTTGGTCACATGGC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82860836 23 + 104043685 CCTACCCTACCA----GGTCATGTGGG i mm10.chr15 C 0 C 0 s canFam3.chr10 46142623 16 - 69331447 CTCACTTTGTCA----GTCC------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 125890 22 + 1056298 CCTGTCATGT-A----GGCAATAGGGT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5130491 49 - 6317780 I e micMur3.chr7 5768565 85 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=68064.000000 s hg38.chr22_GL383582v2_alt 132917 8 + 162811 TCTTAAGA s panTro5.chr22 28912809 8 + 37823149 TCTTAAGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187359 8 + 50109623 TCTTAAGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210203 8 + 4464012 TCTTAAGA i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322167 8 + 92844088 TCTTAAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668531 8 - 96509753 TCTTAAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165509 8 - 13098629 TCTTAAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125347 8 - 4483953 TCTTAAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755280 8 + 33263144 TCTTAAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036307 8 - 14338769 TCTTAAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 974992 8 + 1946073 TCTTAAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001498 8 - 2117846 TCTTAAGA i calJac3.chrUn_GL286373 I 304 C 0 s saiBol1.JH378157 8913000 8 - 16357246 TCTTAAGA i saiBol1.JH378157 I 294 C 0 s cebCap1.NW_016107750v1 1396550 8 - 1807191 TTTTAAGA i cebCap1.NW_016107750v1 C 0 I 325 s aotNan1.NW_018512389v1 27399 8 - 704494 TCTTAAGA i aotNan1.NW_018512389v1 I 307 C 0 s otoGar3.GL873526 36334871 5 - 42659167 TCTTA--- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82860859 7 + 104043685 CCCCAGG- i mm10.chr15 C 0 C 0 s canFam3.chr10 46142639 4 - 69331447 ----AACA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 125912 5 + 1056298 TCTCA--- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5130491 49 - 6317780 I e micMur3.chr7 5768565 85 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=82561.000000 s hg38.chr22_GL383582v2_alt 132925 12 + 162811 GCTCTTAGAATG s panTro5.chr22 28912817 12 + 37823149 GCTCTTAGAACG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187367 12 + 50109623 GCTCTTAGAACG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210211 12 + 4464012 GCTCTTAGAATG i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322175 12 + 92844088 CCTCTTAAAATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668539 12 - 96509753 CCTCTTAAAATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165517 12 - 13098629 CCTCTTAAAATG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125355 12 - 4483953 CCTCTTAAAATG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755288 12 + 33263144 CCTCTTAAAATG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036315 12 - 14338769 CCTCTTAAAATG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975000 12 + 1946073 CCTCTTAAAATG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001506 12 - 2117846 GTTCTTAAAATG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913008 12 - 16357246 GCTCTTAAAATG i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512389v1 27407 12 - 704494 GCTCTTAAAATG i aotNan1.NW_018512389v1 C 0 C 0 s canFam3.chr10 46142643 9 - 69331447 GCTCTCAGA--- i canFam3.chr10 C 0 C 0 e mm10.chr15 82860866 0 + 104043685 C e dasNov3.JH570235 125917 0 + 1056298 C e otoGar3.GL873526 36334876 0 - 42659167 C e proCoq1.NW_012136747v1 5130491 49 - 6317780 I e micMur3.chr7 5768565 85 + 108171978 I e cebCap1.NW_016107750v1 1396558 325 - 1807191 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=387008.000000 s hg38.chr22_GL383582v2_alt 132937 43 + 162811 TGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCCATG s panTro5.chr22 28912829 43 + 37823149 TGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCCATG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187379 43 + 50109623 TGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCCATG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210223 43 + 4464012 TGTCCTACTGTATCT-TAAGAGCTCCTAAAATGTGTTATCCATG i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322187 43 + 92844088 TGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCTATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668551 43 - 96509753 TGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCTATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165529 43 - 13098629 TGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCTATG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125367 43 - 4483953 TGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCTATG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755300 43 + 33263144 TGTCCTGCTATATCT-TAAGAGCTCCTAAAATGTGTTATCTATG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036327 43 - 14338769 TGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCTATG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975012 43 + 1946073 TGTCCTGCTGTATCT-TAAGAGCTGCTAAAATGTGTTATCTATG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001518 43 - 2117846 TGTCCTGCTGTATCT-TAAGAACTCCTAACACACGTTATCTATG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913020 43 - 16357246 TGTCCTGCTGTATCT-TAAGAACTCCTGACATGCGTTATCTATG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1396883 43 - 1807191 TGTCCTGCTGTATCT-TAAGAACTCCTAACATGTGTTATCTATG i cebCap1.NW_016107750v1 I 325 C 0 s aotNan1.NW_018512389v1 27419 43 - 704494 TGTCCTGCTGTATCT-TTAGAACTACTAATATGCGTTATCTATG i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36334876 25 - 42659167 ---------GAATCT-GAAGAGCTCTTAAAATGTG--------- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82860866 23 + 104043685 -----------ATCC-CAGGAGTTGCTAAAGTATG--------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46142652 21 - 69331447 ------------TCTGTAAGAGCTCCAGAAACG----------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 125917 21 + 1056298 ---------GAATCC-TAAAAGTTTCTAATG------------- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5130491 49 - 6317780 I e micMur3.chr7 5768565 85 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=1376201.000000 s hg38.chr22_GL383582v2_alt 132980 111 + 162811 TGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTTGCTTAGT-AAAAACAAACC-----AATTAAA--GT-ATTTACCTTTAACCAGTATCTAA-G------------------GTA-----TGTAC s panTro5.chr22 28912872 111 + 37823149 TGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTTGCTTAGT-AAAAACAAACC-----AATTAAA--GT-ATTTACCTTTAACCAGTATCTAA-G------------------GTA-----TGTAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187422 111 + 50109623 TGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTTGCTTAGT-AAAAACAAACC-----AATTAAA--GT-ATTTACCTTTAGCCAGTATCTAA-G------------------CTA-----TGTAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210266 111 + 4464012 TGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTTGCTTAGT-AAAAACAAACC-----AATTAAA--GT-ATTTACCTTTAACCAGTATCTAA-G------------------GTA-----TGTAC i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322230 106 + 92844088 TGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTCGCTTAGT-AAAAACAAACC-----AAT-------T-TTTCACCTTTAACCAGTATCTAA-G------------------GTA-----TGCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668594 106 - 96509753 TGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTCGCTTAGT-AAAAACAAACC-----AAT-------T-TTTCACCTTTAACCAGTATCTAA-G------------------GTA-----TGCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165572 106 - 13098629 TGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTCGCTTAGT-AAAAACAAACC-----AAT-------T-TTTCACCTTTAACCAGTATCTAA-G------------------GTA-----TGCAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125410 106 - 4483953 TGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTCGCTTAGT-AAAAACAAACC-----AAT-------T-TTTCACCTTTAACCAGTATCTAA-G------------------GTA-----TGTAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755343 129 + 33263144 TGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTCGCTTAGT-AAAAACAAACT-----AAT-------T-ATTCACCTTTAACCAGTATCTAA-GTATTTATTATACTAACCAGTATTTATTATAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036370 106 - 14338769 TGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTCGCTTAGT-AAAAACAAACC-----AAT-------T-TTTCACCTTTAACCAGTATCTAA-G------------------GTA-----TGTAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975055 106 + 1946073 TGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTCGCTTAGT-AAAAACAAACC-----AAT-------T-ATTCACCTTTAACCAGTATCTAA-G------------------GTA-----TGTAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001561 111 - 2117846 TGATTTTCTCTATAAATCTTCCCCTAGACAGATAATGTGTTGGCTTTACCTCACTTAGT-AAAAACAAACCAAGTAAAG-------T-ATTTACCTTTAACCAGTATCTAA-G------------------GTA-----TGTAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913063 106 - 16357246 TGATTTTCTCTACAAATCTTCCCCTAGACAGATAATTTGTTGGCTTTACCTCACTTAGT-AAAAATAAACC-----AAG-------T-ATTTACCTTTAACCAGTATCTAA-G------------------GTA-----TATAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1396926 106 - 1807191 TGATTTTCTCTACAAATCTTCCCCTAGACAGGTGATTTGTTGGCTTTACCTCACTTAGT-AAAAACAAACC-----AAG-------T-ATTTACCTTTAACCAGTATCTAA-G------------------GTA-----TGTAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 27462 107 - 704494 TGATTTTCTCTACAAATCTTCCCCTAGACAGATAATTTGTTGGCTTTACCTCACTTAGT-AAAAACAAACC-----AAG-------TAAAGTACCTTTAACCAGTATCTAA-G------------------GTA-----TGTAC i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5768650 113 + 108171978 TGATCTTTTCTACAAATCTTCCTTAAAGCTGAGAATTTGTTGGCTTTACCTTGCTTAGT-AAAAACAAACT-----TAGTAAAGTGC-ATTTACCTTTGACCAGTATCTAA-G------------------GTG-----TGTAC i micMur3.chr7 I 85 I 113 s proCoq1.NW_012136747v1 5130540 113 - 6317780 TGATCTTTTCTACAAATCTTCCTTAAAGCTGAGAATTTGTTGGCTTTACTTCGCTTAGT-AAAAACAAACT-----TAGTAAAGTGC-ATTTACTTTTAACCAGTATCTAA-G------------------GTA-----TGCAC i proCoq1.NW_012136747v1 I 49 C 0 s otoGar3.GL873526 36334901 92 - 42659167 --ATCTTTTCCACAAATCTTTCTTAAAGCAGACAATGTGTTAAATTTAC--------------------CT-----CAGTAAAGTGC-ATTTACCTTTAACTAGTATTGGA-G------------------GTA-----CATGT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82860889 102 + 104043685 TGATCTTCTCTACAAGTTATCCTTACAGCAAAGAATTTGTTGG-TTTACTTCACTTAAT-AAAACCAAACA-----G---------T-AAAAAATTTTTACCA--AACTAATG------------------GAA-----TGTGC i mm10.chr15 C 0 C 0 s canFam3.chr10 46142673 112 - 69331447 TGATCTTCTCTACAACTCTTCCT-TAAAAACAGAATTTTCTGGCTTTCCCTTGCTTAGT-AAAAACAAACT-----GAGTCAAGTGT-ATCTGCCCTTAACCACGACCTAA-G------------------GTA-----TGTGC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 125938 114 + 1056298 TGATTTTCTCTATACGACTTCCTCGAAGCAGAGAATTTAACGGCTTTTTCCTGCTTACTAAAAAACAAACT-----TCATAATATGT-ATTTACTTTTAACCAGTGTCTAG-G------------------GCA-----TGTAC i dasNov3.JH570235 C 0 C 0 e nomLeu3.chr7b 106705101 0 - 115148730 C a score=164269.000000 s hg38.chr22_GL383582v2_alt 133091 14 + 162811 CACTGATA-TAATAA s panTro5.chr22 28912983 14 + 37823149 CACTGATA-TAATAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187533 14 + 50109623 CACTGATA-TAATAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210377 14 + 4464012 TACTGATA-TAATAA i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322336 14 + 92844088 TATTGATA-TAATAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668700 14 - 96509753 TATTGATA-TAATAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165678 14 - 13098629 TATTGATA-TAATAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125516 14 - 4483953 TATTGATA-TAATAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755472 14 + 33263144 TATTGATA-TAATAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036476 14 - 14338769 TATTGATA-TAATAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975161 14 + 1946073 TATTGATA-TAATAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001672 14 - 2117846 TATTCATA-AAATAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913169 14 - 16357246 TATTCATA-AAATAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397032 14 - 1807191 TATTCATA-AAATAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 27569 14 - 704494 TATTCATA-AAATAA i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5130653 14 - 6317780 TATTGATG-TAATaa i proCoq1.NW_012136747v1 C 0 I 97 s otoGar3.GL873526 36334993 14 - 42659167 TATTGATG-CAATaa i otoGar3.GL873526 C 0 I 835 s mm10.chr15 82860991 15 + 104043685 TACAAATACTACTAA i mm10.chr15 C 0 C 0 s canFam3.chr10 46142785 14 - 69331447 TACCGATG-CAATAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126052 14 + 1056298 TATTGATG-TATTAA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5768763 113 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=13575.000000 s hg38.chr22_GL383582v2_alt 133105 2 + 162811 -AA s panTro5.chr22 28912997 2 + 37823149 -AA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187547 2 + 50109623 -AA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210391 2 + 4464012 -AA i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322350 2 + 92844088 -AA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668714 2 - 96509753 -AA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165692 2 - 13098629 -AA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125530 2 - 4483953 -AA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755486 2 + 33263144 -AA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036490 2 - 14338769 -AA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975175 2 + 1946073 -AA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001686 2 - 2117846 -AA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913183 2 - 16357246 -AA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397046 2 - 1807191 -AA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 27583 2 - 704494 -AA i aotNan1.NW_018512389v1 C 0 C 0 s dasNov3.JH570235 126066 2 + 1056298 Ta- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82861006 0 + 104043685 C e canFam3.chr10 46142799 0 - 69331447 C e otoGar3.GL873526 36335007 835 - 42659167 I e proCoq1.NW_012136747v1 5130667 97 - 6317780 I e micMur3.chr7 5768763 113 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=199811.000000 s hg38.chr22_GL383582v2_alt 133107 24 + 162811 ATTGCTggccggccacagtggctc s panTro5.chr22 28912999 24 + 37823149 ATTGCTggccggccacagtgcctc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187549 24 + 50109623 ATTGCTggccggccacagtggctc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210393 24 + 4464012 ATTGCTggccggccacagtggctc i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322352 24 + 92844088 AGTGCTggccagccacagtggctc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668716 24 - 96509753 AGTGCTggccagccacagtggctc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165694 24 - 13098629 AGTGCTggccagccacagtggctc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125532 24 - 4483953 AGTGCTggccagccacagtggctc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755488 24 + 33263144 AGTGCTggccagccacagtggctc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036492 24 - 14338769 AGTGCTggccagccacagtggctc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975177 24 + 1946073 ATTGCTggccagccacagtggctc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001688 24 - 2117846 ATTGCCAgccagccacagtggctc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913185 24 - 16357246 ATTGCCAgccagccacagtggctc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397048 20 - 1807191 AT----Agccagccacagtggctc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 27585 24 - 704494 ATTGCCAgccagccacagtggctc i aotNan1.NW_018512389v1 C 0 C 0 s canFam3.chr10 46142799 6 - 69331447 ------------------TAGCTC i canFam3.chr10 C 0 C 0 e mm10.chr15 82861006 0 + 104043685 C e dasNov3.JH570235 126068 0 + 1056298 C e otoGar3.GL873526 36335007 835 - 42659167 I e proCoq1.NW_012136747v1 5130667 97 - 6317780 I e micMur3.chr7 5768763 113 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=774106.000000 s hg38.chr22_GL383582v2_alt 133131 99 + 162811 acacctgtaatcccagcactttgggaggccga-ggcaggcagactgtttgagctcaggagaccagcatgggcaacataacaagaccccgtctccacaaaa s panTro5.chr22 28913023 99 + 37823149 acacctgtaatcccagcactttgggaggccga-ggcaggcagactgtttgagctcaggagaccagcatgggcaacataacaagaccccgtctccacaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187573 99 + 50109623 acacctgtaatcccagcactttgggaggccga-ggcaggcagactgtttgagctcaggagaccagcatgggcaacataacaagaccccgtctccacaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210417 100 + 4464012 acacctataatcacagcactttgggaggccgagggcaggcagactgtttgagctcaggagaccagcatgggcaacataacaagaccccgtctccacaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322376 99 + 92844088 acacctgtaataccagcactttgggaggctga-ggcaggtagattgtttgagctcaggagaccagcatgggcaacataacaagaccacatctctacaaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668740 99 - 96509753 acacctgtaataccagcactttgggaggctga-ggcaggtagattgtttgagctcaggagaccagcatgggcaacataacaagaccacatctctacaaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165718 88 - 13098629 acacctgtaatcccagcactttgggaggctga-ggcaggtagattgtttgagct-----------catgggcaacataacaagaccacatctctacaaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125556 99 - 4483953 acacctgtaatcccagcactttgggaggctga-gggaggtagattgtttgagctcaggagaccagcatgggcaacataacaagaccacatctctacaaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755512 99 + 33263144 acacctgtaatcccagcactttgggaggctga-ggcaggcagattgtttgagctcaggagaccagcatgggcaacataacaagaccacatctccacaaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036516 99 - 14338769 acacctgtaatcccagcactttgggaggctga-gggaggtagattgtttgagctcaggagaccagcatggacaacataacaagaccacatctctacaaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975201 95 + 1946073 acacctgtaatcccagcactttgggaggctga-ggcaggcaga----ttgagctctggagaccagcatgggcaacataacaagaccacatctctaaaaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001712 95 - 2117846 acatttgtaatcccagcactttgggaggctga-ggcagggagac----tgagctcaggagactagcatgggcaatataggaaaaccccatctctacaaaa i calJac3.chrUn_GL286373 C 0 I 30 s saiBol1.JH378157 8913209 99 - 16357246 acatctgtaatctcagcactttgggaggctga-ggcaggcagactgtttgagctcaggaacctagcatgggcaacacaggaaaaccctatctcttaaaaa i saiBol1.JH378157 C 0 M 367 s cebCap1.NW_016107750v1 1397068 99 - 1807191 acatctataatcccagcactttgggaggctga-ggcaggcaaactgtttgggctgaggagactagcatgggcaacataggaaaaccccatctcttaaaaa i cebCap1.NW_016107750v1 C 0 I 16 s aotNan1.NW_018512389v1 27609 99 - 704494 acatctgtaatcccagcactttgggaggctga-ggcaggcagactgtttgagctcaggagactagcatgggcaacataggaaaaccccatctctacaaaa i aotNan1.NW_018512389v1 C 0 C 0 s mm10.chr15 82861006 35 + 104043685 -------TAATTATAT-----------------ATTAAGCAACTT----------------CCAATATGGCCAAC------------------------- i mm10.chr15 C 0 C 0 e dasNov3.JH570235 126068 0 + 1056298 C e canFam3.chr10 46142805 0 - 69331447 C e otoGar3.GL873526 36335007 835 - 42659167 I e proCoq1.NW_012136747v1 5130667 97 - 6317780 I e micMur3.chr7 5768763 113 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=36731.000000 s hg38.chr22_GL383582v2_alt 133230 10 + 162811 aatacaaaag s panTro5.chr22 28913122 10 + 37823149 aatacaaaag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187672 10 + 50109623 aatacaaaag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210517 10 + 4464012 aatacaaaag i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322475 10 + 92844088 aatataaaac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668839 10 - 96509753 aatataaaac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165806 10 - 13098629 aatataaaac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125655 10 - 4483953 aatataaaac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755611 10 + 33263144 aatataaaac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036615 10 - 14338769 aatataaaac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975296 10 + 1946073 aatataaaac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001837 8 - 2117846 cacacaaa-- i calJac3.chrUn_GL286373 I 30 I 1 s cebCap1.NW_016107750v1 1397183 8 - 1807191 gacacaaa-- i cebCap1.NW_016107750v1 I 16 I 1 s aotNan1.NW_018512389v1 27708 7 - 704494 -aaaaaaa-- i aotNan1.NW_018512389v1 C 0 I 16 e mm10.chr15 82861041 0 + 104043685 C e dasNov3.JH570235 126068 0 + 1056298 C e canFam3.chr10 46142805 0 - 69331447 C e otoGar3.GL873526 36335007 835 - 42659167 I e proCoq1.NW_012136747v1 5130667 97 - 6317780 I e micMur3.chr7 5768763 113 + 108171978 I e saiBol1.JH378157 8913308 367 - 16357246 M e nomLeu3.chr7b 106705101 0 - 115148730 C a score=932361.000000 s hg38.chr22_GL383582v2_alt 133240 110 + 162811 aattagctggg--tgtgctggcttgtgcctgtag----tcccagccactccagaggctgaggcaggaggatcacttgagcct-gggaggcagaggttgcagtgagccgaggctgcac s panTro5.chr22 28913132 110 + 37823149 aattagctggg--tgtgctggcttgtgcctgtag----tcccagccactccagaggctgaggcaggaggatcacttgagcct-gggaggcagaggttgcagtgagccgaggctgcac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187682 110 + 50109623 aattagctggg--tgtgctggcttgtgcctgtag----tcccagccactccagaggctgaggcaggaggatcacttgagcct-gggaggcagaggttgcagtgagccgaggctgcac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210527 110 + 4464012 aattagctggg--tgtgctggcttgtgcctgtag----tcgcagccactccagaggctgaggcgggaggatcacttgagcct-gggaggcagaggttgcagtgagccgaggctgcac i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322485 110 + 92844088 aattagctggg--tgtgctggcttatgcctgtag----tcccagctactccagagactgaggcgggaggatcacttgagcct-aggaggcagaggttgcagtgagccgaggttgcac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668849 110 - 96509753 aattagctggg--tgtgctggcttatgcctgtag----tcccagctactccagagactgaggcgggaggatcacttgagcct-aggaggcagaggttgcagtgagccgaggttgcac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165816 110 - 13098629 aattagctggg--tgtgctggcttgtgcctgtag----tcccagctactccagagactgaggcgggaggatcacttgagcct-agtaggcagaggttgcagtgagccaaggttgcac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125665 110 - 4483953 aattagctggg--tgtgctggcttgtgcctgtag----tcctagctactccagagactgaggcgggaggatcacttgagcct-aggaggcagaggttgcagtgagccgaggttgcac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755621 110 + 33263144 aattagctggg--tgtgctggcttgtgcctgtag----tcccagctactccagagactgaggcgggaggatcacttgagcct-aggaggcagaggttgcagtgagccgaggttgcac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036625 110 - 14338769 aattagctggg--tgtgctggcttgtgcctgtag----tcctagctactccagagactgaggcaggaggatcacttgagcct-aggaggcagaggttgcagtgagccgaggttgcac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975306 110 + 1946073 aattagctggg--tgtgctggcttgtgcctgtag----tcccagctactccagagactgaggcgggaggatcacttgagcct-gggaggcagaggttgcagtgagtcgaggttgcac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001846 115 - 2117846 aattagctggg--tatgctggcttgtgcctgtagctctctctagctactccagaggctgaggtatgaggatcacttgagcctggggaggcagaggatgcagtaagctgaggttacat i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8913675 113 - 16357246 aattagctaggtatatgctggcttgtgcctatag----tcccagctactccagaggctgaggtatgaggatcacttgagcctggggaggcagaggatgcagtgagaccaggttgcat i saiBol1.JH378157 M 367 C 0 s cebCap1.NW_016107750v1 1397192 111 - 1807191 aattagttggg--tatattggcttgtgcctgtag----tcccagctactccagaggctaaggtatgaggattacttgagcctggggaggcagaggatgcagtgagacgaggctgcat i cebCap1.NW_016107750v1 I 1 C 0 s aotNan1.NW_018512389v1 27731 111 - 704494 aattagctggg--taagctggcttgtgcctgtag----ttccagctactccagaggctgaggtatgaggatcacttgagcctggggaggcagaggatgcagtgagccgaggatgcat i aotNan1.NW_018512389v1 I 16 C 0 s mm10.chr15 82861041 57 + 104043685 ---TATCTGGC--TTC-----CCTGTGTATATAC----AAACTGCCCCTCCC----------CGGGAGGGT------------GGGGGACTGA------------------------ i mm10.chr15 C 0 C 0 e dasNov3.JH570235 126068 0 + 1056298 C e canFam3.chr10 46142805 0 - 69331447 C e otoGar3.GL873526 36335007 835 - 42659167 I e proCoq1.NW_012136747v1 5130667 97 - 6317780 I e micMur3.chr7 5768763 113 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=387295.000000 s hg38.chr22_GL383582v2_alt 133350 62 + 162811 gctactacactccagcctgggtgcta-cagtaagacc-tgtccc----agtaaataaataaaTAATTG s panTro5.chr22 28913242 62 + 37823149 gctactacactccagcctgggtgcta-cagtaagacc-tgtccc----aataaataaataaaTAATTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187792 62 + 50109623 gctactacactccagcctgggtgcta-cagtaagacc-tgtccc----aataaataaataaaTAATTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210637 62 + 4464012 gctactacactccagcctgggtggta-gagtaagacc-tgtccc----aataaataaataaaTAATTG i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322595 62 + 92844088 cctactgcactccagcctgggtacta-gagcaagact-tatctc----aataaataaataaacaaaTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87668959 62 - 96509753 cctactgtactccagcctgggtacta-gagcaagact-tatctc----aataaataaataaacaaaTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165926 58 - 13098629 gctactgcactccagcctgggtacta-gagcaagact-tatctc--------aataaataaacaaaTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125775 62 - 4483953 gctactgcactccagcctgggtacta-gagcaagact-tatctc----aataaataaataaacaaaTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755731 63 + 33263144 gctactgcactccagcctgggtactaggagcaagact-tatctc----aataaataaataaacaaaTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036735 62 - 14338769 gctactgcactccagcctgggtacta-gagcaagact-tatctc----aataaataaataaacaaaTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975416 66 + 1946073 gctactgcactccagcctggatacta-gagtaagact-tgtctcaataaataaataaataaacaaaTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2001961 63 - 2117846 gccactgcactccagcctgggtgcta-gagcaagaccctgtctc----aataaaTTACTTAATAAATG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913788 63 - 16357246 gtcactgcactccagcctgggtgcta-gagaaagactctgtctc----aataaaTTACTTAATAAATG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397303 63 - 1807191 gccactgcactccagcctgggtgcta-gagcaagaccctgtctc----aataaaTTACTTAATAAATG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 27842 63 - 704494 gccactgcactgcagcctgggtgcta-gagcaagaccctgtctc----aataaaTTACTTAATAAATG i aotNan1.NW_018512389v1 C 0 C 0 s mm10.chr15 82861098 21 + 104043685 ------------------------TC-ATTTATGACA-TGTTCT----AA-----------------G i mm10.chr15 C 0 C 0 s dasNov3.JH570235 126068 7 + 1056298 gctacca------------------------------------------------------------- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46142805 0 - 69331447 C e otoGar3.GL873526 36335007 835 - 42659167 I e proCoq1.NW_012136747v1 5130667 97 - 6317780 I e micMur3.chr7 5768763 113 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=197484.000000 s hg38.chr22_GL383582v2_alt 133412 28 + 162811 CCATTTATTTAGCAA----TCTATATATGT---------TA s panTro5.chr22 28913304 37 + 37823149 CCATTTATATAGCAA----TCTATATATAGCAATCTATATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187854 28 + 50109623 CCATTTATTTAGCAA----TCTATATATGT---------TA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210699 28 + 4464012 CCATTTATTTAGCCA----TCTATATATGT---------TA i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322657 28 + 92844088 CCATTTATTAAGCAA----TCTATATATGT---------CA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669021 28 - 96509753 CCATTTATTAAGCAA----TCTATATATGT---------CA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7165984 28 - 13098629 CCATTTATTAAGCAA----TCTATATATGT---------CA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125837 28 - 4483953 CCATTTATTAAGCAA----TCTATATATGT---------CA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755794 28 + 33263144 CCATTTATTAAGCAA----TCTATATATGT---------CA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036797 28 - 14338769 CCATTTATTAAGCAA----TCTATATATGT---------CA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975482 28 + 1946073 CCATTTATTAAGCAA----TCTATATATGT---------CA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002024 28 - 2117846 GCATTTATTTATTTA----TCTATATATGC---------CA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913851 24 - 16357246 GC----ATTTATTTA----TCTATATACGC---------CA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397366 28 - 1807191 GCatttatttattta----tctatatatGC---------CA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 27905 28 - 704494 GCatttatttattta----tctatatatGC---------CA i aotNan1.NW_018512389v1 C 0 C 0 s mm10.chr15 82861119 18 + 104043685 TCATT--------------TCTAGACATGT---------TG i mm10.chr15 C 0 C 0 s canFam3.chr10 46142805 19 - 69331447 CCATTTATTC-------------TACGTGT---------CA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126075 29 + 1056298 ---tttatttagcaacttctttctacatgt---------ca i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36335007 835 - 42659167 I e proCoq1.NW_012136747v1 5130667 97 - 6317780 I e micMur3.chr7 5768763 113 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=555899.000000 s hg38.chr22_GL383582v2_alt 133440 76 + 162811 GTCACTGTGTGGTTTTACCTGTAACTCAATTAATGAATGAGGGGGAAA-A-------ATTAATGTAATTTTTTCCAAAAGTCCA s panTro5.chr22 28913341 76 + 37823149 GTCACTGTGTGGTTTTACCTGTAACTCAATTAATGAATGAGGGGGAAA-A-------TTTTATGTAATTTTTTCCAAAAGTCCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187882 76 + 50109623 GTCACTGTGTGGTTTTACCTGTAACTCAATTAATGAATGAGGGGGAAA-A-------TTTTATGTAATTTTTTCCAAAAGTCCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210727 76 + 4464012 GTCACTGTGTGGTTTTACCTGTAACTCAATTAATGAATGAGGGGGAAA-A-------ATTTATGTAATTTTTTCCAAAAGTCCA i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322685 75 + 92844088 GTCACTGTGTGGTTTTACCTGTATCTCAATTAATGAATGAGGGGGAAA-A--------TTTATGTAATTTTTTCCAAAAGTCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669049 75 - 96509753 GTCACTGTGTGGTTTTACCTGTATCTCAATTAATGAATGAGGGGGGAA-A--------TTTATGTAATTTTTTCCAAAAGTCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166012 75 - 13098629 GTCACTGTGTGGTTTTACCTGTATCTCAATTAATGAATGAGGGGGGAA-A--------TTTATGTAATTTTTTCCAAAAGTCCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125865 75 - 4483953 GTCACTATGTGGTTTTACCTGTATCTCAATTAATGAATGAGGGGGGAA-A--------TTTACGTAATTTTTTCCAAAAGTCCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755822 75 + 33263144 GTCACTGTGTGGTTTTACCTGTATCTCAATTAATGAATGAGGGGGGAA-G--------TTTATGTAATTTTTCCCAAAAGTCCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036825 75 - 14338769 GTCACTGTGTGGTTTTACCTGTATCTCAATTAATGAATGAGGGGGGAA-A--------TTTACGTAATTTTTTCCAAAAGTCCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975510 75 + 1946073 GTCACTGTGTGGTTTTACCTGTATCTCAATTAATGAATGAGGGGGAAA-A--------TTTATGTAATTTTTTCCAAAAGTCCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002052 61 - 2117846 GTCACTGTGTGGTTTTACCTGTATCTCAATTAATCAATGAGGGGGGAA-A------AACTTACGTAAT---------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913875 62 - 16357246 GTCACTGTGTGGTTTTACTTGTATCTCAATTAATCAATGAGGAGGGAA-A------AACTTATATAATG--------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397394 65 - 1807191 GTCACTGTGTGGTTTTACCTGTATCTCAATTAATCAATGAGGGAGGAA-A------AACTTATATAATAATT------------ i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 27933 62 - 704494 GTCACTGTGTGGTTTTACTTGTATCTCAATTAATCAATGAGGGAGGAAGA------AACTTATATAAT---------------- i aotNan1.NW_018512389v1 C 0 C 0 s canFam3.chr10 46142824 64 - 69331447 TGCGCTGTATGGCTTTACGGGTATTTTAACtcacagatgaggaaacaa-aaaacataaattgtgt------------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126104 63 + 1056298 ggtactatgtggttttacatatatctcaacttctgaaagagaaaacaa-accagacaaattatg-------------------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82861137 0 + 104043685 C e otoGar3.GL873526 36335007 835 - 42659167 I e proCoq1.NW_012136747v1 5130667 97 - 6317780 I e micMur3.chr7 5768763 113 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=449386.000000 s hg38.chr22_GL383582v2_alt 133516 33 + 162811 AATTTTCCAAAAGTCACTCCTCTAGGACAAGTT s panTro5.chr22 28913417 33 + 37823149 AATTTTCCAAAAGTCACTCCTCTAGGATAAGTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187958 33 + 50109623 AATTTTCCAAAAGTCACTCCTCTAGGACAAGTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210803 33 + 4464012 AATTTTCCAAAAGTCACTCCTCTAGGACAAGTT i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322760 33 + 92844088 AATTTTCCAAAAGTCACTCCTCTAGGACAAGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669124 33 - 96509753 AATTTTCCAAAAGTCACTCCTCTAGGACAAGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166087 33 - 13098629 AATTTTCCAAAAGTCACTCCTCTAGGACAAGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125940 33 - 4483953 AATTTTCCAAAAGTCACTCCTCTAGGACAAGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755897 33 + 33263144 AATTTTCCAAAAGTCACTCCTCTAGGACAAGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036900 33 - 14338769 AATTTTCCAAAAGTCACTCCTCTAGGACAAGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975585 33 + 1946073 AATTTTCCAAAAGTCACTCCTCTAGGACAAGTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002113 32 - 2117846 -TTTTTCTAAAAGTCACTCCTCTAGGACAAGTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913937 32 - 16357246 -TTTTCCCAAAAGTCACTCCTCTAGGACAAGTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397459 32 - 1807191 -TTTTCCCAAAAGTCACTCCTCTAGGACAAGTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 27995 32 - 704494 -TTTTTCCAAAAGTCACTCCTCTAGGACAAGCT i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5768876 33 + 108171978 AATTTTCCAAAAGTCACTCTTCTAGGACAAGTT i micMur3.chr7 I 113 C 0 s proCoq1.NW_012136747v1 5130764 33 - 6317780 AATTTTCTAAAAGTCACTCTTCTAGGACAAATT i proCoq1.NW_012136747v1 I 97 C 0 s canFam3.chr10 46142888 33 - 69331447 aatttgccgaaagtcgctcttccaggataaact i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126167 33 + 1056298 gacttgccaaaagttactcttctaggacatgat i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82861137 0 + 104043685 C e otoGar3.GL873526 36335007 835 - 42659167 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=127492.000000 s hg38.chr22_GL383582v2_alt 133549 8 + 162811 GGAGCTGA s panTro5.chr22 28913450 8 + 37823149 GGAGCTGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187991 8 + 50109623 GGAGCTGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210836 8 + 4464012 GGAGCTGA i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322793 8 + 92844088 GGAGCTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669157 8 - 96509753 GGAGCTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166120 8 - 13098629 GGAGCTGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125973 8 - 4483953 GGAGCTGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755930 8 + 33263144 GGAGCTGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036933 8 - 14338769 GGAGCTGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975618 8 + 1946073 GGAGCTGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002145 8 - 2117846 GCAGCTGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913969 8 - 16357246 GCAGCTGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397491 8 - 1807191 GCAGCTGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28027 8 - 704494 GCAGCTGA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5768909 8 + 108171978 GGAGCTGA i micMur3.chr7 C 0 I 604 s proCoq1.NW_012136747v1 5130797 8 - 6317780 AGAGCTGA i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82861137 8 + 104043685 GGAGTTGA i mm10.chr15 C 0 C 0 s canFam3.chr10 46142921 8 - 69331447 ggagctga i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126200 8 + 1056298 ggagctga i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36335007 835 - 42659167 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=10785.000000 s hg38.chr22_GL383582v2_alt 133557 1 + 162811 C s panTro5.chr22 28913458 1 + 37823149 C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41187999 1 + 50109623 C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210844 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322801 1 + 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669165 1 - 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166128 1 - 13098629 C i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125981 1 - 4483953 C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755938 1 + 33263144 C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036941 1 - 14338769 C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975626 1 + 1946073 C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002153 1 - 2117846 C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913977 1 - 16357246 C i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397499 1 - 1807191 C i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28035 1 - 704494 C i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5130805 1 - 6317780 C i proCoq1.NW_012136747v1 C 0 I 115 s mm10.chr15 82861145 1 + 104043685 T i mm10.chr15 C 0 C 0 s canFam3.chr10 46142929 1 - 69331447 t i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126208 1 + 1056298 t i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36335007 835 - 42659167 I e micMur3.chr7 5768917 604 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=77876.000000 s hg38.chr22_GL383582v2_alt 133558 7 + 162811 ATTCTGT s panTro5.chr22 28913459 7 + 37823149 ATTCTGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188000 7 + 50109623 ATTCTGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210845 7 + 4464012 ATTCTGT i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322802 7 + 92844088 ATTCTGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669166 7 - 96509753 ATTCTGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166129 7 - 13098629 ATTCTGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125982 7 - 4483953 ATTCTGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755939 7 + 33263144 ATTCTGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036942 7 - 14338769 ATTCTGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975627 7 + 1946073 ATTCTGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002154 7 - 2117846 TTTCTGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913978 7 - 16357246 ATTCTCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397500 7 - 1807191 ATTCTGT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28036 7 - 704494 ATTCTGT i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5130921 7 - 6317780 ATTCTGT i proCoq1.NW_012136747v1 I 115 C 0 s mm10.chr15 82861146 7 + 104043685 ACACTTT i mm10.chr15 C 0 C 0 s canFam3.chr10 46142930 7 - 69331447 cttctat i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126209 5 + 1056298 attct-- i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36335007 835 - 42659167 I e micMur3.chr7 5768917 604 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=1128714.000000 s hg38.chr22_GL383582v2_alt 133565 102 + 162811 AACTCCAATTCTT-CTGATTCTAGAGCCCATAACCCTTT-CTTTCACTGTACCACAAAATTAGGCAAGGAAGATCCAAATGCATATTTTTGAAAATCCTGACAC s panTro5.chr22 28913466 102 + 37823149 AACTCCAATTCTT-TTGATTCTAGAGCCCATAACCCTTT-CTTTCACTGTACCACAACATTAGGCAAGGAAAATCCAAATGCATATTTTTGAAAATCCTGACAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188007 102 + 50109623 AACTCCAATTCTT-TTGATTCTAGAGCCCATAACCCTTT-CTTTCACTGTACCACAACATTAGGCAAGGAAAATCCAAATGCATATTTTTGAAAATCCTGACAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210852 102 + 4464012 AACTCCAATTCTT-TTGATTCTAGAGCCCATAACCCTTT-CTTTCACTGTACCACAAAATTAGGCAAGGAAGATCCAAATGCATATTTTTGAAAATCCTGACAC i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322809 102 + 92844088 AACTCCAACTCTT-TTGATTCTAGAGCCCATAACCCTTT-CTTTCACTGTACCACAAAATTAGGCAAGGAGGACCCAAATCCGTATTTTTGAAAATCCTGACAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669173 102 - 96509753 AACTCCAACTCTT-TTGATTCTAGAGCCCATAACCCTTT-CTTTCACTGTACCACAAAATTAGGCAAGGAGGACCCAAATCCGTATTTTTGAAAATCCTGACAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166136 102 - 13098629 AACTCCAACTCTT-TTGATTCTAGAGCCCATAACCCTTT-CTTTCACTGTACCACAGAATTAGGCAAGGAGGACCCAAATCCCTATTTTTGAAAATCCTGACAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4125989 102 - 4483953 AACTCCAACTCTT-TTGATTCTAGAGCCCATAACCCTTT-CTTTCACTGTACCACAAAATTAGGCAAGGAGGACCCAAATCTGTATTTTTGAAAATCCTGACAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24755946 102 + 33263144 AACTCCAACTCTT-TTGATTCTAGAGCCCATAACCCTTT-CTTTCACTGTACCACAAAATTAGGCAAGGAGGACCCAAATCTGTATTTTTGAAAATCCTGACAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14036949 102 - 14338769 AACTCCAACTCTT-TTGATTCTAGAGCCCATAACCCTTT-CTTTCACTGTACCACAAAATTAGGCAAGGAGGACCCAAATCCATATTTTTGAAAATCCTGACAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975634 102 + 1946073 AACTCCAACTCTT-TTGATTCTAGAGCCCATAACCCTTT-CTTTCACTGTACCACAAAATTAGGCAAAGAGGACCCAAATCCGTATTTCTGAAAATCCTGACAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002161 86 - 2117846 AACTCCAATTCTT-TTGATTCTAGAGCCCATAACC-----CTTTCACTGTACCACAA-ATTAGG-----------CAAATCCATGTTTTTGAAAATCCTGATAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8913985 90 - 16357246 AACTCCAATTCTT-TTGATTCTAGAGCCCCTAATCCTTT-CTTTCACTATACCACAA-ATTAGG-----------CAAATCCATGTTTTTGAAAATCCTGACAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397507 90 - 1807191 AACTTCAATTCCT-TTGATTCTAGAGCCCATAACCCTTT-CTTTCACTGTACCACAA-ATTAGG-----------CAAATCCATGTTTTTGAAAATCCTGACAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28043 90 - 704494 AACTCCAATTCTT-TTGATTCTAGAGCCTATAACCCTTT-CTTTCACTGTACCACAA-ATCAGG-----------CAAATCCATGTTTTTGAAAATCCTGACAC i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5130928 102 - 6317780 AATTCTAATTCTT-CTGACTCTAAAACCCATGATCATTTCCCTTCACTGCACCACAA-ATTGAGCAAGGAGCACCTAAATCCATGTTTCTGAAAATCCTGACAC i proCoq1.NW_012136747v1 C 0 I 284 s otoGar3.GL873526 36335842 101 - 42659167 ACTCTTAATTCTT-TTGACTCCCAAACACATGATCCTTT-CCTTTACTGTCCCACAA-AATGAGCAAGAAACACCGAAATCCATGATTTTGAAAATTCTGAAAC i otoGar3.GL873526 I 835 C 0 s mm10.chr15 82861153 92 + 104043685 AACT-CAATTTTT-----TTCTAAAATTCATGATC-----CTTTTACTATACCATAT-GTTAAGCAAGAGCCATCCAAGTACATTTGGTTTTCCTTTTTGACAA i mm10.chr15 C 0 C 0 s canFam3.chr10 46142937 86 - 69331447 aactc-----------aattctaaagctcatg-----tt-cttccactgcaccacAA-ATTTAGCAAGGAGCACCCAAATCCAGGTTTTTAAAAATCCTGACAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126214 100 + 1056298 aactaaaattttttttcattctaaagcccatagtccttt-ctctctctgtaccacac--ATGAACAAGAAGCACCCTAATCCATGTTTTTT-AAATCCTGACCA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5768917 604 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=2533984.000000 s hg38.chr22_GL383582v2_alt 133667 249 + 162811 ACACTTGGGTCAGATCTCTAATAACTGTAGCTATC----AAT---TATTGCCATGCCTCACACATGTGACACA--CTATCAGGTGCTTTACACAAATGTTAATGCATTTCAT--CCTTACCATGATCTAAGAAATGTTAGTAATC-CTTTTTGTAAATGGAGACTC--AGA-AGTTA-AACAAGCAA-AATATTCATGGTAAACAATGAGATAAGATATATAATATGCCCACTGCAAAACCCAGTCTGTATTTCC-------------------CAATCTG---TGAC s panTro5.chr22 28913568 249 + 37823149 ACACTTGGGTCAGATTTCTAATAACTGTAGCTATC----AAT---TATTGCCATGCCTCACACATGTGACACA--CTATCAGGTGCTTTACACAAATGTTAATGCATTTCGT--CCTTACCATGATCTAAGAAATGTTAGTAATC-CTTTTTGTAAATGGAGACTC--AGA-AGTTA-AACAAGCAA-AATATTCATGGTAAACAATGAGATAAGATATATAATATGCCCACTGCAAAACCCAGTCTGTATTTCC-------------------CAATGTG---TGAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188109 249 + 50109623 ACACTTGGGTCAGATCTCTAATAACTGTAGCTATC----AAT---TATTGCCATGCCTCACACATGTGACACA--CTATCAGGTGCTTTACACAAATGTTAATGCATTTCAT--CCTTACCATGATCTAAGAAATGTTAGTAATC-CTTTTTGTAAATGGAGACTC--AGA-AGTTA-AACAAGCAA-AATATTCATGGTAAACAATGAGATAAAATATATAATATGCCCACTGCAAAACCCAGTCTGTATTTCC-------------------CAATCTG---TGAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3210954 248 + 4464012 ACACTTGGGTCAGATCTCTAATAACTGTAGCTATC----AAT---TATTG-CATGCCTCACACATGTGACACA--TTATCAGGTGCTTTACACAAATGTTAATGCATTTCAT--CCTCACCATGATCTAAGAAATGTTAGTAATC-CTTTTTGTAAATGGAGACTC--AGA-AGTTA-AACAAGCAA-AATATTCATGGTAAACAATGAGATAAGATGTATAATATGCCCACTGCAAAACCCAGTCTGTATTTCC-------------------CAATCTG---TGAC i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84322911 254 + 92844088 ACATTTGGGTCAGATCTCTAATAACTGTGGCTATCACTTAGt---tactg-catgcctaacacatgtgacacactctaccaggtgctttacacaaacgttaatgcatttcat--tctcaccacgatctaagaaatgttagtagtc-cttttcataaatggagactc--aga-agtta-aataaGCAA-AAGACTCATGGTAAACAATGAGGTAAGATATATAATATGCCCACTGCAAAACCCAGTCTGTATTTCC-------------------CAATCTG---TGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669275 254 - 96509753 ACATTTGGGTCAGATCTCTAATAACTGTGGCTATCACTTAGT---TACTG-CATGCCTAACACATGTGACACACTCTACCAGGTGCTTTACACAAACGTTAATGCATTTCAT--TCTCACCACGATCTAAGAAATGTTAGTAGTC-CTTTTCATAAATGGAGACTC--AGA-AGTTA-AATAAGCAA-AAGACTCATGGTAAACAATGAGGTAAGATATATAATATGCCCACTGCAAAACCCAGTCTGTATTTCC-------------------CAATCTG---TGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166238 254 - 13098629 ACATTTGGGTCAGATCTCTAATAACTGTGGCTATCACTTAGt---tactg-catgcctaacacatgtgacacactctaccaggtgctttacacaaacgttaatgcatttcat--tctcaccacgatctaagaaatgttagtagtc-cttttcataaatggagactc--aga-agtta-aataaGCAA-AAGACTCATGGTAAACAATGAGGTAAGATATATAATATGCCCACTGCAAAACCCAGTCTGTATTTCC-------------------CAATCTG---TGAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126091 254 - 4483953 ACATTTGGGTCAGATCTCTAATAACTGTGGCTATCACTTAGt---tactg-catgcctaacacatgtgacatactctaccaggtgctttacacaaacattaatgcatttcat--tctcaccacgatctaagaaatgttagtagtc-cttttcataaacggagactc--aga-agtta-aataaGCAA-AAGACTCATGGTAAACAATGAGGTAAGATATATAATATGCCCACTGCAAAACCCAGTCTGTATTTCC-------------------CAATCTG---TGAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756048 254 + 33263144 ACATTTGGGTCAGATCTCTAATAACTGTGGCTATCACTTAGT---TACTG-CATGCCTAACACATGTGACACACTCTACCAGGTGCTTTACACAAACGTTAATGCATTTCAT--TCTCACCACGATCTAAGAAATGTTAGTAGTC-CTTTTCATAAATGGAGACTC--AGA-AGTTA-AATAAGCAA-AAGACTCATGGTAAACAATGAGGTAAGATATATAATATGCCCACTGCAAAACCCAGTCTGTATTTCC-------------------CAATCTG---TGAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037051 254 - 14338769 ACATTTGGGTCAGATCTCTAATAACTGTGGCTATCACTTAGt---tactg-catgcctaacacatgtgacatactctaccaggtgctttacacaaacgttaatgcatttcat--tctcaccacgatctaagaaatgttagtagtc-cttttcataaatggagactc--aga-agtta-aataaGCAA-AAGACTCATGGTAAACAATGAGGTGAGATACATAATATGCCCACTGCAAAACTCAGTCTGTATTTCC-------------------CAATCTG---TGAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975736 254 + 1946073 ACATTTGGGTCAGATCTCTAATAACTGTGGCTATCACTTAGt---tattg-catgcctaacacatgtgacacactctaccaggtgctttacacaaacgttaatgcatttcat--tctcaccacgatctaagaaatgttagtagtc-cttttcataaatggagactc--aga-agtta-aataaGCAA-AAGACTCATGGTAAACAATGAGGTAAGATATATAATATGCCCACTGCAAAACCCAGTCTGTATTTCC-------------------CAATCTG---TGAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002247 252 - 2117846 ACATTTGGGTCAGATCTCTAAAAACTGTGGCTATCCCTTAGT---TACTG-CATGCCTAACACATATGACACACTTTACCAGCTGCTTTGCACAAATGTTAATGCATTTCAT--CCTCACCATGATCTAAGAAATGTTAGTAGTC-CTTTTTGTAAGTGGAGACTC--AAA-AGTTA-AACAAGCAA-AATCTTCATGGTAAACAATGAGGTAAGTTATATA--ATGCCCACTGCAAAACTCAGTTGGTATTTCC-------------------CAATCTG---TGAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914075 252 - 16357246 ACAATTGGGTCAGATCTCTAATAATTGTGGCTATCCCTCAGT---TATTG-CATGCCTAACACATGTGACACACTTTACCAGCTGCTTTGCACAAATGTTAATGCATTTCAT--TCTCACCATGATCTAAGAAATGTTAGTAGGC-CTTTTTGTAAGTGGAGACTC--AAA-AGTTA-AACAAGCAA-AATCTTCATGGTAAACGATGAGGTAAGTTATATA--ATGCCCACTGCAAAACCCAGTTGTTATTTCC-------------------CAATCTG---TGAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397597 252 - 1807191 ACATATGGGTCAGATCTCTAATAACTGTGGCTATCCCTCAGT---TATTA-CATGCCTAACATATGTGACACACTTTACCAGCTGCTTTGCACAAATGTTAATGCATTTCAT--CCTCACCATGATCTAAGAAATGTTAGTAGTC-CTTTTTGTAAGTGGAGACTC--AAA-AGTTA-AACAAGCAA-AATCTTCATGGTAAACAATGAGGTAAGTTATAGA--ATGCCCACTGCAAAACCCAGTTGGTATTTCC-------------------CAATCTG---TGAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28133 252 - 704494 ACATTTGGGTTAGATCTCTAATAACTGTGGCTATCCCTCAGT---TGCTG-CATGCCTAACACATGTGACACACTTTACCAGCTGCTTGGCACAAATGTTAATGCATTTCAT--CCTCACCATGATCTAAGAAATGTTAGCAGTC-CTTTTTGTAAGTGGAGACTC--AAA-AGTTA-AACAAGCAA-AATCTTCATGGTAAACAATGAGGTAAGTTATATA--ATGCCCACTGCAAAACCCAGTTGGTATTTCC-------------------CAATCTG---TGAG i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36335943 267 - 42659167 ----TTGCATCAGACCTTT---AACTGTAGTTATTGCTTATTTACTACTG-CATGCCTAAGACAAgccacatactcta-caggtgctttacaaaaatgttaatgtgtttaat--cttcaccatgacctaagaagtgttggtactc-cttttcataaatggagactcagaga-aatta-aatgaGCAA-CACACTTACAGTAAACAAAGAGGGGGAATATGAA--ATGCCCACC-CCAGACCTAGTCTATACTTTCAGCAAAAGTCTTTCTTGAACCAGCAG---CAAC i otoGar3.GL873526 C 0 I 21 s mm10.chr15 82861245 240 + 104043685 TAATTTGAGTAGTGTCTAAATTAATAATGGCTGTT-CTTATT---TGTTG-CATGCT--ACACATG---------CTACCAGGTACTTTACATAGATGTTAACAGTCTCTCT--CCTTACTATAATCTA--CAATGTTAGTATTCACCTTTTATAAACCAAGGCTT--AGA-AGTTA-ATTAATAAATCATGTGCCTCATAGAC----AGACAGAATAAGAA--ATGTCCACTCCAGAATCCAG-CTACACTTCTGACAA--------------AAGTCTC---TGCC i mm10.chr15 C 0 I 16 s canFam3.chr10 46143023 245 - 69331447 ACACCTGTGTCAGGTTTATGATGCCGACAGCCCTctcctatt---tactg-tgtgtctaatacaggccctgcgctgtgccaggcactttacataaacattgatgtagttcat--cctcaTCA--------------TTATTGCTC-CTTTCTGTAAACTGAGGCTC--AGG-GAACATAACAAGCAA-AACATTCGTAGAAAACA--GAGGTGAGATATGGA--ATGCCCACCCCCAACCCCCATTTGTACTCCTGGCAG--------------AAGCCTGCCTTGAC i canFam3.chr10 C 0 I 20 s dasNov3.JH570235 126314 205 + 1056298 ATACTTGGGTCAGATCT---ATAACTGTAGCTCTTATTTACT---TACAA---------------------------------TGCTTTACCCAGATGTTAATCTATTTAATTATCTCACCATTTCTTA----GTATTAACACTC-CTTTTTGTAAACTGAAGCTC--AGAGAAATT-AACAAGCAC-GGCATTTACAGTAAAGAGAGAGGTGGGATTTGTATATTGCCCACCCCAGAACCCAGTCTATACTT----------------------------------- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5131030 284 - 6317780 I e micMur3.chr7 5768917 604 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=335273.000000 s hg38.chr22_GL383582v2_alt 133916 45 + 162811 ATTG----------GGAAGCATTTTAGAAAGGAATCTTGAGGAATCTTGCTAGAA s panTro5.chr22 28913817 45 + 37823149 ATTG----------GGAAGCATTTTAGAAAGGGATCTTGAGGAATCTTGCTAGAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188358 45 + 50109623 ATTG----------GGAAGCATTTTAGAAAGGAATCTTGAGGAATCTTGCTAGAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211202 45 + 4464012 ATTG----------GGAAGCATTTTAGAAAGGAATCTTGAGGAATCTTGCTAGAA i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323165 45 + 92844088 ATTG----------GGAAGCATTTTAGAACGGAATCTTGAGGAATCTTGCTAGAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669529 45 - 96509753 ATTG----------GGAAGCATTTTAGAACAGAATCTTGAGGAATCTTGCTAGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166492 45 - 13098629 ATTG----------GGAAGCATTTTAGAACGGAATCTTGAGGAATCTTGCTAGAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126345 45 - 4483953 ATTG----------GGAAGCATTTTAGAACGGAATCTTGAGGAATCTAGCTAGAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756302 45 + 33263144 ATTG----------GGAAGCATTTTAGAAAGGAATCTTGAGGAATCTTGCTAGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037305 45 - 14338769 ATTG----------GGAAGCATTTTAGAACGGAATCTTGAGGAATCTTGCTAGAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 975990 45 + 1946073 ATTG----------GGAAGCATTTTAGAAAGGAATCTTGAGGAATCTTGCTAAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002499 45 - 2117846 CTTG----------GGAAGCATTTTAGAAGAGAATCTTGACGAATCTTGCTAGAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914327 19 - 16357246 CTTG----------GGAAGCA--------------------------TGCTAGAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397849 19 - 1807191 CTTT----------GGAAGCA--------------------------TGCTAGAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28385 19 - 704494 CTTG----------GGAAGCA--------------------------TGCTAGAA i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5131314 42 - 6317780 ATTG----------GGAAGCATTTTAGAAAGGAATCTTGAAG---TTTGCTAGAA i proCoq1.NW_012136747v1 I 284 C 0 s otoGar3.GL873526 36336231 37 - 42659167 ACCA----------GGAAGCAT----GAAAAGAATCTTGAAG---TTTGCTA-AA i otoGar3.GL873526 I 21 C 0 s mm10.chr15 82861501 50 + 104043685 ATTGATCTATTCATAAAAGCA-CTAAGAAAGAAATCTTCAAG---GCTGCCA-AG i mm10.chr15 I 16 C 0 s canFam3.chr10 46143288 42 - 69331447 ATTG----------GGAAGCATTTTAAAAAGAAACCTTCAAA---TTTGCTAGAA i canFam3.chr10 I 20 C 0 s dasNov3.JH570235 126519 20 + 1056298 -----------------------------------TTGCAGAAGTCTTCCTTGAA i dasNov3.JH570235 C 0 I 70 e micMur3.chr7 5768917 604 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=546729.000000 s hg38.chr22_GL383582v2_alt 133961 63 + 162811 TTTAGTTGACTGCTTGTACCTAG--ATATATCTGTAACACCTGTATCGTTTGTTT--TGTGTATGTG s panTro5.chr22 28913862 61 + 37823149 TTTAGTTGACTGCTTATACCTAG--ATATATCTATAACACCTGTATCGTTTGTTT----TGTATGTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188403 61 + 50109623 TTTAGTTGACTGCTTGTACCTAG--ATATATCTGTAACACCTGTATCGTTTGTTT----TGTATGTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211247 63 + 4464012 TTTAGTTGACTGCTTGTACCTAG--ATATATCTATAACACCTGTATCGTTTGTTT--TGTGTATGTG i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323210 63 + 92844088 ATTAGTTGACTGCTTGTACCTAG--ATATATCTATAGTACCTGTATCATTTGATT--TGTGTGTGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669574 63 - 96509753 ATTAGTTGACTGCTTGTACCTAG--ATATATCTATAGTACCTGTATCATTTGATT--TGTGTGTGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166537 63 - 13098629 ATTAGTTGACTGCTTGTACCTAG--ATATATCTATAGTACCTGTATCATTTGATT--TGTGTGTGTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126390 63 - 4483953 ATTAGTTGACTGCTTGTACCTAG--ATATATCTATAGTACCTGTATCATTTGATT--TGTGTGTGTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756347 63 + 33263144 ATTAGTTGACTGCTTGTACCTAG--ATATATCTATAGTACCTGTACCATTTGATT--TGTGTGTGTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037350 63 - 14338769 ATTAGTTGACTGCTTGTACCTAG--ATATATCTATAGTACCTGTATCATTTGATT--TGTGTGTGTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976035 65 + 1946073 ATTAGTTGACTGCTTGTACCTAG--ATATATCTATAATACCTGTATCATTTGATTTGTGTGTGTGTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002544 58 - 2117846 GCT-GTTGACTGCTTGCATCTAT--GTATATCTACAATACCTGTATCATCTGTTT--TA----TGTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914346 62 - 16357246 GTT-GTTGACTGCTTACACCCAC--ATATATCTGTAATACCTGTGTCATCTGTTT--TATGTGTGTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397868 62 - 1807191 GTT-GTTGACTGCTTGCACCTAC--ATATATCTACAATACCTGTATCATCTCTTT--TATGTGTGTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28404 62 - 704494 CTT-GTTGACTGCTTGCACCTACATATATATCTATAATACCTGTATCA--TGTTT--TATGTGTGTG i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5131356 54 - 6317780 TTGAGTTGACTGCTTGTACCTGG--ATATAT---------GTGAATCATTTGTTT--TACGTGTACA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36336268 54 - 42659167 CTGAGTTGACTGCTTATACCTGA--ATAGAT---------CCGAATCATTTATTT--CACATGTGCA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82861551 54 + 104043685 TTGAGCTGTCACCTTAAACATGG--ATGTA---------CCTGTATCATCTTTTT--CATGTACATA i mm10.chr15 C 0 C 0 s canFam3.chr10 46143330 54 - 69331447 TTGAGTTCACTATTTATATCTGG--ATACA---------CCCATGTTATTTGCTT--GAGGTATGTA i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 126539 70 + 1056298 I e micMur3.chr7 5768917 604 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=1403871.000000 s hg38.chr22_GL383582v2_alt 134024 106 + 162811 CAAATGTGGGATCTTCCTAAGTGTATCAA----GCATAAAGATCTGCTCAGTGAC-----TTAATATT-TCATACTCTATGTCCTGTTTGCACATGGGCAGAGCCTATATTTTTCT s panTro5.chr22 28913923 106 + 37823149 CAAATGTGGGATCTTCCTAAGTGTATCAA----GCATAAAGATCTGCTCAGTGAC-----TTAATATT-TCATACTCTATGTCCTGTTTGCACATGGGCAGAGCCTATATTTTTCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188464 106 + 50109623 CAAATGTGGGATCTTCCTAAGTGTATCAA----GCATAAAGATCTGCTCAGTGAC-----TTAATATT-TCATACTCTATGTCCTGTTTGCACATGGGCAGAGCCTATATTTTTCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211310 106 + 4464012 CAAATGTGGGATCTTCCTAAGTGTATCAA----GCATAAAGATCTGCTCAGTGAC-----TTAATATT-TCATACTCTATGTCCTGTTTGCACATGGGCAGAGCCTATATTTTTCT i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323273 106 + 92844088 CAAATGTGGGATCGTCCTAAGTGCATCAA----GCATAAAGATCTGCTCAGTGAC-----TTAATATT-TCATACTCTATGTCCTGTTTGCACATGGGCAGAGCCTATATTTTTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669637 106 - 96509753 CAAATGTGGGATCGTCCTAAGTGCATCAA----GCATAAAGATCTGCTCAGTGAC-----TTAATATT-TCATACTCTATGTCCTGTTTGCACATGGGCAGAGCCTATATTTTTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166600 106 - 13098629 CAAATGTGGGATCATCCTAAGTGCATCAA----GCATAAAGATCTGCTCAGTGAC-----TTAATATT-TCATACTCTATGTCCTGTTTGCACATGGGCAGAGCCTATATTTTTCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126453 106 - 4483953 CAAATGTGGGATCGTCCTAAGTGCATCAA----GCATAAAGATCTGCTCAGTGAC-----TTAATATT-TCATACTCTATGTCCTGTTTGCACATGGGCAAAGCCTATATTTTTCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756410 106 + 33263144 CAAATGTGGGATCGTCCTAAGTGCATCAA----GCATAAAGATCTGCTCAGTGAC-----TTAATATT-TCATACTCTATGTCCTGTTTGCACATAGGCAGAGCCTATATTTTTCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037413 106 - 14338769 CAAATGTGGGACCGTCCTAAGTGCATCAA----GCATAAAGATCTGCTCAGTGAC-----TTAATATT-TCATACTCTATGTCCTGTTTGCACATGGGCAAAGCCTATATTTTTCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976100 106 + 1946073 CAAATGTGGGATCGTCCTAAGTGCATCAA----GCATAAAGATCTGCTCAGTGAC-----TTAATATT-TCATACTCTACGTCCTGTTTGCATATGGGCATAGCCTATATTTTTCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002602 106 - 2117846 CAAATATGGGATCTTCCTAAGCGTATCAG----GCATAAAGATCTGCTCGATGAC-----TTAGTATT-TCATATTCTATGTCCTGTTTGCACATGGGCAGAACCTATATTTTCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914408 105 - 16357246 CAAATGTGGGATCTTCCTAAGCATA-CAG----GCATAAAGATCTGCTCAATGAC-----TTAGTATT-TCATATTCTATGTCCTGTTTGCACATGGGCAGAGCCTACATTTTCCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1397930 106 - 1807191 CAAATGTGGGATCTTCCTAAGTGTATCAG----GCATAAAGATCTGCTCAATGAG-----TTAGTATT-TCATATTCTATGTCCTGTTTGCACATGGGCAGAGCCTATATTTTCCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28466 106 - 704494 CAAATGGGGGATCTTCCTAAGCGTATCAG----GCATAAAGATCTGCTCAATGAC-----TTAGTATT-TCATATTCTATGTCCTGTTTGCACATGGGCAGAGCCTATATTTTCCT i aotNan1.NW_018512389v1 C 0 I 1 s micMur3.chr7 5769521 111 + 108171978 CAAATGTGGGATCTTCCTAAGTATATCAG----GCACATAGATTGGCCCAGTGACCTGATTTGATATT-TCATATTCTATGTCCTGTTTACACATGGACAGAGCCTAGATTTTTCT i micMur3.chr7 I 604 C 0 s proCoq1.NW_012136747v1 5131410 106 - 6317780 CAAATGCGGGATCTTCCTAAGCATATCAG----GCACACAGATCGGCCCAGTGAC-----TTGATATT-TCATATTCTATGTCCTGTTTACACATGGTCAGAGCCTAGATTTTTCT i proCoq1.NW_012136747v1 C 0 I 122 s otoGar3.GL873526 36336322 111 - 42659167 CAAATGTGGGATGTTCCTGAATATACTGC----ACACAAAGACCTGCCCAGTGACTTCATTTGACATT-TCGTATTGTATGTCCTGTTTGCACATGGGCAAAATGTAGATTTTTCT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82861605 94 + 104043685 TAAATT-------------AGCAGACTGG----GCATGTGTACCTGTCCACTGAC-TAGTTTGGTTTTATCCTATTCTGCATCCAGTTTGCTCCT----AGAATCTAGCATGTCTT i mm10.chr15 C 0 C 0 s canFam3.chr10 46143384 110 - 69331447 CGAACACGGGCTCTTCCTAAGTTCATCAATTGGGCTCAAAGACTTGCCCAGTAAC-----TTGATATT-TCAAATTCTAAGTTGTGTTTGCAGAGGTGCAGAGTCTAGATTTTTCT i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 126539 70 + 1056298 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=28611.000000 s hg38.chr22_GL383582v2_alt 134130 2 + 162811 CA s panTro5.chr22 28914029 2 + 37823149 CA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188570 2 + 50109623 CA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211416 2 + 4464012 CA i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323379 2 + 92844088 CA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669743 2 - 96509753 CA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166706 2 - 13098629 CA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126559 2 - 4483953 CA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756516 2 + 33263144 CA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037519 2 - 14338769 CA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976206 2 + 1946073 CA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002708 2 - 2117846 CA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914513 2 - 16357246 CA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398036 2 - 1807191 CA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28573 2 - 704494 CA i aotNan1.NW_018512389v1 I 1 C 0 s micMur3.chr7 5769632 2 + 108171978 CA i micMur3.chr7 C 0 I 327 s otoGar3.GL873526 36336433 2 - 42659167 GA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82861699 2 + 104043685 CA i mm10.chr15 C 0 C 0 s canFam3.chr10 46143494 2 - 69331447 CA i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 126539 70 + 1056298 I e proCoq1.NW_012136747v1 5131516 122 - 6317780 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=748599.000000 s hg38.chr22_GL383582v2_alt 134132 83 + 162811 GTGGCTAAAAGTTATCTTAG---TGTAA-TAGGACTTCAGAATAAAATGAAGTGT--AATGAAGGTGCT-------GGCTTCCTCCCTGAC---TTGGG s panTro5.chr22 28914031 83 + 37823149 GTGGCTAAAAGTTATCTTAG---TGTAA-TAGGACTTCAGAATAAAATAAAGTGT--AATGAAGGTGCT-------GGCTTCCTCCCTGAC---TTGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188572 83 + 50109623 GTGGCTAAAAGTTATCTTAG---TGTAA-TAGGACTTCAGAATAAAATGAAGTGT--AATGAAGGTGCT-------GGCTTCCTCCCTGAC---TTGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211418 83 + 4464012 GTGGCTAAAAGTTATCTTAG---TGTAA-TAGGACTTCAGAATAAAATGAAGTGT--AATGAAGGTGCT-------GGCTTCCTCCCTGAC---TTGGG i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323381 83 + 92844088 GTGGCTAAAAGTTATCTTAG---TGTAA-TAGGACTTCAGAAAAAGATGAAGTGT--AATGAAGGTGCT-------GGCTTTCTCCCTGAC---TTGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669745 83 - 96509753 GTGGCTAAAAGTTATCTTAG---TGTAA-TAGGACTTCAGAAAAAGATGAAGTGT--AATGAAGGTGCT-------GGCTTTCTCCCTGAC---TTGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166708 83 - 13098629 GTGGCTAAAAGTTATCTTAG---TGTAA-TAGGACTTCAGAATAAGATGAGGTGT--AATGAAGGTGCT-------GGCTTTCTCCCTGAC---TTGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126561 83 - 4483953 GTGGCTAAAAGTTATCTTAG---TGTAA-TAGGACTTCAGAATAAGATGAAGTGT--AATGAAGGTGCT-------GGCTTTCTCCCTGAC---TTTGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756518 82 + 33263144 GTGGCTAAAAGTTATCTTAG---TGTAA-TAGGACTTCAGAATAAGATGAAGTGT--AATGAAGGTGCT-------GGCTTTCTCCCTGAC---TTGG- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037521 83 - 14338769 GTGGCTAAAAGTTATCTTAG---TGTAA-TAGGACTTCAGAATAAGATGAAGTGT--AATGAAGGTGCT-------GGCTTTCTCCCTGAC---TTGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976208 83 + 1946073 GTGGCTAAAAGTTATCTTAC---TGTAA-TAGGACTTCAGAATAAGATTAAGTAT--AATGAAGGTGCT-------GGCTTTCTCCCTGAC---TTGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002710 86 - 2117846 GTGGCTAAAAGTTACCTCAGTATTATAA-TAGGCCTTCAGAATAACAGCAAGTAT--AATGAATGGGCT-------GGCTTCCTCCCTGAC---TTGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914515 81 - 16357246 GTGGCT--AAGTTACCTTGG---TATAA-TAGGCCTTCAGAATAAGAGGAAGTGT--AATGAACGTGCT-------GGCTTCCTCCCTGAC---TTGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398038 83 - 1807191 GTGGCTAAAAGTTACCTTAG---TATAA-TAGGCCTTCAGAATAAGAGGAAGTGT--AATGAACGTGCT-------GGCTTCCTCCCTGAC---TTGGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28575 83 - 704494 GTGGCTAAAAGTTACCTTAG---TATAA-TAGGCCTTCAGAATAAGAGGAAGTAT--AATGAACATGCT-------GGCTTCCTCCCTGAC---TTGGG i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36336435 66 - 42659167 -------------------G---TATAATTAGGCCTTTAAACTAAGGGGATGTGC----TGAGGGTTCT-------GGCCTGTTCCGTGACTGTTTGGG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82861701 71 + 104043685 -------GGACTGACCTCAG---GACAACTAGTGCT---------GATG----GC--ACTGGTAGCGCTCTGGCAAGGGTAGCGCTCTGGC---AAGGG i mm10.chr15 C 0 C 0 s canFam3.chr10 46143496 84 - 69331447 GTGACTGATAG--ATTTTGG---TACAAGTAGGCCTTTAGAATAAGATGAGGTGTTCACAGTACTTGTT-------GACTGGCTCCCTGGC---TGAGC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 126539 70 + 1056298 I e proCoq1.NW_012136747v1 5131516 122 - 6317780 I e micMur3.chr7 5769634 327 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=427639.000000 s hg38.chr22_GL383582v2_alt 134215 46 + 162811 AGATCAGAA------GAGTCT--GAAAGCAAC-----------------TCAGAATTCGCAAGTCAGTTCC s panTro5.chr22 28914114 46 + 37823149 AGATCAGAA------GAGTCT--GAAAGCAAC-----------------TCAGAATTCGCAAGTCAGTTCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188655 46 + 50109623 AGATCAGAA------GAGTCT--GAAAGCAAC-----------------TCAGAATTCGCAAGTCAGTTCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211501 46 + 4464012 AGATCAGAA------GAGTCT--GAAAGCAAC-----------------TCAGAATTCGCAAGTCAGTTCC i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323464 46 + 92844088 AGATCAGAA------GAGTCT--GAAAGCAAC-----------------TCAGAATTCGCAAGTCAGTTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669828 46 - 96509753 AGATCAGAA------GAGTCT--GAAAGCAAC-----------------TCAGAATTCGCAAGTCAGTTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166791 46 - 13098629 AGATCAGAA------GAGTCT--GAAAGCAAC-----------------TCAGAATTCGCAAGTCAGTTCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126644 46 - 4483953 AGATCAGAA------GAGTCT--GAAAGCAAC-----------------TCAGAATTCGCAAGTCAGTTCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756600 45 + 33263144 -GATCAGAA------GAGTCT--GAAAGCAAC-----------------TCAGAATTCGCAAGTCAGTTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037604 46 - 14338769 AGATCAGAA------GAGTCT--GAAAGCAAC-----------------TCAGAATTCGCAAGTCAGTTCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976291 46 + 1946073 AGATCAGAA------GAGTCT--GAAAGCAAC-----------------TCAGAATTCGCAAGTCAGTTCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002796 45 - 2117846 AGGCCAGAA-------AGTCT--GAAAGAAAC-----------------TCAGAATTTGCAAGTCAGTTCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914596 45 - 16357246 AGGCCAAAA-------AGTCT--GAAAGAAAC-----------------TCAGAATTTGCAAGTCAGTTCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398121 45 - 1807191 AGGCCAGAA-------AGTCT--GAAAGAAAC-----------------TCAGAATCTGCAAGTCAATTCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28658 45 - 704494 AGGCCAGAA-------AGTCT--GAAAGAAAC-----------------TCAGAATTTGCAAGTCAGTTCC i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36336501 65 - 42659167 AGTCCAGAA----TGGAGCCT--GAAATCAACGTAAGGAATCAACTCCATCAGGATTCACAAGACAGTTCA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82861772 67 + 104043685 AATCCCAAA--AAGGGACTCT--GAAAACATCTTAAGGAACCAAGTCATTCAGAGCTCACAAGCTTTTTCG i mm10.chr15 C 0 C 0 s canFam3.chr10 46143580 50 - 69331447 AGCCCAGAATTCTAGGAGCTTAAGGAACCAAC-----------------TCAGAATTTCCAAGTCAG---- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126609 26 + 1056298 ------------------------AGATCAGT-----------------AAAAAATTCCCAAGTCAG---- i dasNov3.JH570235 I 70 C 0 e proCoq1.NW_012136747v1 5131516 122 - 6317780 I e micMur3.chr7 5769634 327 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=38441.000000 s hg38.chr22_GL383582v2_alt 134261 3 + 162811 TTG s panTro5.chr22 28914160 3 + 37823149 TTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188701 3 + 50109623 TTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211547 3 + 4464012 TTG i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323510 3 + 92844088 TTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669874 3 - 96509753 TTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166837 3 - 13098629 TTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126690 3 - 4483953 TTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756645 3 + 33263144 TTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037650 3 - 14338769 TTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976337 3 + 1946073 TTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002841 3 - 2117846 TTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914641 3 - 16357246 TTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398166 3 - 1807191 TTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28703 3 - 704494 TTG i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5131638 3 - 6317780 TTG i proCoq1.NW_012136747v1 I 122 C 0 s otoGar3.GL873526 36336566 3 - 42659167 CTG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82861839 3 + 104043685 TTA i mm10.chr15 C 0 C 0 s canFam3.chr10 46143630 3 - 69331447 TCA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126635 3 + 1056298 TCA i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5769634 327 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=543898.000000 s hg38.chr22_GL383582v2_alt 134264 40 + 162811 TCTAGAAGGAAAGAAACCCACAAG-AATGCTGCATATCTAA s panTro5.chr22 28914163 40 + 37823149 TCTAGAAGAAAAGAAACCCACAAG-AATGCTGCATATCTAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188704 40 + 50109623 TCTAGAAGAAAAGAAACCCACAAG-AATGCTGCATATCTAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211550 40 + 4464012 TCTAGAAGAAAAGAAACCCACAAG-AATGCTGCATATCTAA i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323513 36 + 92844088 TCTAGAGGAAAAGAA----ACAAG-AATGCTGCATATCTAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669877 40 - 96509753 TCTAGAGGAAAAGAAACACACAAG-AATGCTGCATATCTAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166840 40 - 13098629 TCTAGAGGAAAAGAAACACACAAG-AATGCTGCATATCTAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126693 40 - 4483953 TCTAGAGGAAAAGAAACACACAAG-AATGCTGCATATCTAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756648 40 + 33263144 TCTAGAGGAAAAGAAACACACAAG-AATGCTGCATATCTAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037653 40 - 14338769 TCTAGAGGAAAAGAAACACACAAG-AATGCTGCATATCTAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976340 40 + 1946073 TCTAGAGGGAAAGAAACACACAAG-AATGCTGCATATCTGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002844 41 - 2117846 TCTAGAGAAAAGGAAATCCTCAAGAAATGCTGCATATCTAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914644 41 - 16357246 TCTAGAGAAAAAGAAATCCTCAAGAAATGCTGCATATCTAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398169 41 - 1807191 TCTAGAGAAAAAGAAATCCTCAAGAAATGCTACGTATCTAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28706 41 - 704494 TCTAGAGAAAAAGAAATCCTCAAGAAATGCTGCATATCTAA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5769961 40 + 108171978 TCTAGAGGAAAAGAAACCCACCAG-AATGCTGCAGATCTAA i micMur3.chr7 I 327 I 47 s proCoq1.NW_012136747v1 5131641 40 - 6317780 TCTAGAGGAAAAGAAACCCACCAG-AATGCTGCAGATCTAA i proCoq1.NW_012136747v1 C 0 I 126 s otoGar3.GL873526 36336569 30 - 42659167 TCT------AAAGAAACCCACCAG-AATGCTGTAGAT---- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82861842 40 + 104043685 TCTTGGGAAAAAGAAATCTACTAG-AATACTGCAGGTGTAA i mm10.chr15 C 0 C 0 s canFam3.chr10 46143633 40 - 69331447 TCCTGAGGAAAAGAAACTCACCAG-AGTGCTACAGATCTAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126638 40 + 1056298 TCTAGAAGAAAAGAAGCCCACCAG-AACAATACAGATCTAA i dasNov3.JH570235 C 0 C 0 e nomLeu3.chr7b 106705101 0 - 115148730 C a score=427329.000000 s hg38.chr22_GL383582v2_alt 134304 47 + 162811 AAAGATTG---CT----------------------TTCTGGGTGTCAAAAC-----TCATA--TTAGCCATGTAA----GCCA--- s panTro5.chr22 28914203 47 + 37823149 AAAGATTG---CT----------------------TTCTGGGTGTCAAAAC-----TCATA--TTAGGCATGTAA----GCCA--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188744 47 + 50109623 AAAGATTG---CT----------------------TTCTGGGTGTCAAAAC-----TCATA--TTAGCCATGTAA----GCCA--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211590 47 + 4464012 AAAGATTG---CT----------------------TTCTGGGTGTCAAAAC-----TCATA--TTAGCCATGTAA----GCTA--- i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323549 47 + 92844088 AAAGATTG---CT----------------------TTCTGGGTGGCAAAAC-----TCGTA--TTAGCCATGTAA----ACTA--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669917 47 - 96509753 AAAGATTG---CC----------------------TTCTGGGTGGCAAAAC-----TCGTA--TTAGCCATGTAA----ACTA--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166880 47 - 13098629 AAAGATTG---CT----------------------TTCTGGGTGGCAAAAC-----TCGTA--TTAGCCATGTAA----ACTA--- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126733 47 - 4483953 AAAGATTG---CT----------------------TTCTGGGTGTCAAAAC-----TCGTA--TTAGCCATGTAA----ACTA--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756688 47 + 33263144 AAAGATTG---CT----------------------TTCTGGGTGTCAAAAC-----TCATA--TTAGCCATGTAA----ACTA--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037693 47 - 14338769 AAAGATTG---CT----------------------TTCTGGGTGTCAAAAC-----TCGTA--TTAGCCATGTAA----ACTA--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976380 47 + 1946073 AAAGATTG---CT----------------------TTCTGGGTGTCAAAAC-----TCGTA--TTAGCCATGTAA----ACTA--- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002885 47 - 2117846 GAAGATTG---CT----------------------TTCTGGGTGTCAAAAC-----TCCTA--TTAGCCATGTAA----GCTA--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914685 49 - 16357246 GAAGATTG---CT----------------------TTCTGGATGTCAAAAC-----TCCTATTTTAGCCATGTAA----GCTA--- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398210 47 - 1807191 GAAGATTG---CT----------------------TTCTGGATGTCAAAAC-----TCCTA--TTAGCCATGTAA----GCTA--- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28747 47 - 704494 GAAGATTG---CT----------------------TTCTGGTTGTCAAAAC-----TCCTA--TTAGCCATGTAA----GCTA--- i aotNan1.NW_018512389v1 C 0 C 0 s mm10.chr15 82861882 36 + 104043685 AAAAATTGGCTCT----------------------TCCAGAG---------------------TCGGCCACAAAA----GCTG--- i mm10.chr15 C 0 I 3 s canFam3.chr10 46143673 52 - 69331447 AAATTTTG---CT----------------------CTCTGGGGGTACAGACATGTGTTATA--TTAGTCATATAA----ACTT--- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126678 81 + 1056298 CAAGTATG---CTCAAATAAGACTAAAAGCCACTGCTCTGAATGCCAAAATCTGTATTATA--TTAGCCACATAATAATACTATTA i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36336599 0 - 42659167 C e proCoq1.NW_012136747v1 5131681 126 - 6317780 I e micMur3.chr7 5770001 47 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=571343.000000 s hg38.chr22_GL383582v2_alt 134351 47 + 162811 -TAAAAAATATCCACCTTGAATCATGACC-AAATACATGCAGGCAAAAA s panTro5.chr22 28914250 47 + 37823149 -TAAAAAATATCCACCTTGAATCATGACC-AAATACATGCAGGCAAAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188791 47 + 50109623 -TAAAAAATATCCACCTTGAATCATGACC-AAATACATGCAGGCAAAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211637 47 + 4464012 -TTAAAAATATCCACCTTGAATCATGATC-AAATACATGCAGGCAAAAA i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323596 47 + 92844088 -TAGAAAATATCCACCTTCAATCATGATC-AAATACATGCAGGCAAAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87669964 47 - 96509753 -TAGAAAATATCCACCTTCAATCATGATC-AAATACATGCAGGCAAAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166927 47 - 13098629 -TAGAAAATATCCACCTTCAATCATGATC-AAATACATGCAGGCAAAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126780 47 - 4483953 -TAGAAAATATCCACCTTCAATCATGATC-AAATACATGCAGGCAAAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756735 47 + 33263144 -CAGAAAATATCCACCTTCAATCATGATC-AAATACATGCAGGCAAAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037740 47 - 14338769 -TAGAAAATATCCACCTTCAATCATGATC-AAATACATGCAGGCAAAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976427 47 + 1946073 -CAGAAAATATCCATCTTCAATCATGATC-AAATATATGCAGGCAAAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002932 47 - 2117846 -TAAAAAATATCCACCTTCAATCATGATC-AAATATATGCAGGCAAAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914734 47 - 16357246 -TAaaaaatatccaccttcaatcatgatc-aaatatatgcaggcaaaaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398257 47 - 1807191 -TAAGAAAAATCCACCTTCAATCATGATC-AAATATATGCAAGCAAAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28794 47 - 704494 -TAAAAAATATCCACTTTCAATCATGATC-AAATATATGCAGGCAAAAA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5770048 47 + 108171978 -TAAGAAATATCCACCTTCAACCATGATC-AAATATATGCAGGGAAAAA i micMur3.chr7 I 47 I 35 s otoGar3.GL873526 36336599 17 - 42659167 --------------------------------GTACATGCATGGAAAAC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82861921 47 + 104043685 -GGAAAAAAATCTATCTGCAAACATGATG-AAATATTTGCAGGCCTCAA i mm10.chr15 I 3 C 0 s canFam3.chr10 46143725 48 - 69331447 -TAaaaaatattcaccttcaaccatgatcaaaattaatgctggcaaaaa i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126759 47 + 1056298 AAaaaaaaattctaccttcact-atgatc-aagtatgtgcaggcaaaaa i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5131681 126 - 6317780 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=260922.000000 s hg38.chr22_GL383582v2_alt 134398 25 + 162811 CTA--GGGGGATAAATTTGTAACTATT s panTro5.chr22 28914297 25 + 37823149 CTA--GGGGGATAAATTTGTAACTATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188838 25 + 50109623 CTA--GGGGGATAAATTTGTAACTATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211684 27 + 4464012 CTAGGGGGGGATAAATTTGTAACTATT i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323643 25 + 92844088 CTG--GGGGGATAAATTTGTAACTATT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670011 25 - 96509753 CTG--GGGGGATAAATTTGTAACTATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166974 25 - 13098629 CTG--GGGGGATAAATTTGTAACTATT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126827 25 - 4483953 CTG--GGGGGATAAATTTGTAACTATT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756782 25 + 33263144 CTG--GGGGGATAAATTTGTAACTATT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037787 25 - 14338769 CTG--GGGGGATAAATTTGTAACTATT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976474 25 + 1946073 CTG--GGGGGATAAATTTGTAACTATT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2002979 25 - 2117846 CAG--AGGTCATAAATTTGTAATTATT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914781 25 - 16357246 cgg--agagcataaatttgtaactatt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398304 25 - 1807191 CGG--AGAGCATAAATTTGTAACTATT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28841 25 - 704494 CGG--AGGGCATAAATTTGTAACTATT i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36336616 24 - 42659167 GTG--AGAGCACAAATTT-TAACTACT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82861968 25 + 104043685 AAG--AAGGCACTAATCTACAGCTATT i mm10.chr15 C 0 C 0 s canFam3.chr10 46143773 25 - 69331447 cga--gaggcacaaatttacagctatc i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126806 25 + 1056298 gtg--ggggcataactttattgctatt i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5131681 126 - 6317780 I e micMur3.chr7 5770095 35 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=10424.000000 s hg38.chr22_GL383582v2_alt 134423 1 + 162811 A s panTro5.chr22 28914322 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188863 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211711 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323668 1 + 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670036 1 - 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7166999 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126852 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756807 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037812 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976499 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003004 1 - 2117846 G i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1398329 1 - 1807191 A i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36336640 1 - 42659167 A i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82861993 1 + 104043685 A i mm10.chr15 C 0 I 1 s canFam3.chr10 46143798 1 - 69331447 a i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 126831 1 + 1056298 a i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 28866 0 - 704494 C e proCoq1.NW_012136747v1 5131681 126 - 6317780 I e micMur3.chr7 5770095 35 + 108171978 I e saiBol1.JH378157 8914806 0 - 16357246 C e nomLeu3.chr7b 106705101 0 - 115148730 C a score=50513.000000 s hg38.chr22_GL383582v2_alt 134424 7 + 162811 CATTTCC s panTro5.chr22 28914323 7 + 37823149 CATTTCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188864 7 + 50109623 CATTTCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211712 7 + 4464012 CATTTCC i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323669 7 + 92844088 CACTTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670037 7 - 96509753 CACTTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167000 7 - 13098629 CACTTCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126853 7 - 4483953 CACTTCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756808 7 + 33263144 CATTTCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037813 7 - 14338769 CACTTTC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976500 7 + 1946073 CATTTCC i colAng1.NW_012115588v1 C 0 C 0 s cebCap1.NW_016107750v1 1398330 7 - 1807191 AATTTCC i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36336641 7 - 42659167 AATTTCC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82861995 7 + 104043685 AAAATCC i mm10.chr15 I 1 C 0 s canFam3.chr10 46143799 6 - 69331447 -attttt i canFam3.chr10 C 0 I 1402 s dasNov3.JH570235 126832 7 + 1056298 cattttc i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 28866 0 - 704494 C e proCoq1.NW_012136747v1 5131681 126 - 6317780 I e micMur3.chr7 5770095 35 + 108171978 I e saiBol1.JH378157 8914806 0 - 16357246 C e calJac3.chrUn_GL286373 2003005 0 - 2117846 C e nomLeu3.chr7b 106705101 0 - 115148730 C a score=-47734.000000 s hg38.chr22_GL383582v2_alt 134431 3 + 162811 T--------------------------------------------------------------------------------------------gg s panTro5.chr22 28914330 3 + 37823149 T--------------------------------------------------------------------------------------------gg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188871 3 + 50109623 T--------------------------------------------------------------------------------------------gg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211719 3 + 4464012 T--------------------------------------------------------------------------------------------gg i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323676 3 + 92844088 T--------------------------------------------------------------------------------------------gg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670044 3 - 96509753 T--------------------------------------------------------------------------------------------gg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167007 3 - 13098629 T--------------------------------------------------------------------------------------------gg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126860 3 - 4483953 T--------------------------------------------------------------------------------------------gg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756815 3 + 33263144 T--------------------------------------------------------------------------------------------gg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037820 3 - 14338769 T--------------------------------------------------------------------------------------------gg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976507 3 + 1946073 T--------------------------------------------------------------------------------------------gg i colAng1.NW_012115588v1 C 0 C 0 s cebCap1.NW_016107750v1 1398337 20 - 1807191 TAAAAAATTTAAAAGAT---------------------------------------------------------------------------GAg i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36336648 3 - 42659167 C--------------------------------------------------------------------------------------------AA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82862002 95 + 104043685 CAAataaatagatagatagatagatagatagatagatagatagatagatagatagatagatagataagtaaataaataTAAAAATAAAAATAAag i mm10.chr15 C 0 C 0 s dasNov3.JH570235 126839 3 + 1056298 --------------------------------------------------------------------------------------------caa i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 28866 0 - 704494 C e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5131681 126 - 6317780 I e micMur3.chr7 5770095 35 + 108171978 I e saiBol1.JH378157 8914806 0 - 16357246 C e calJac3.chrUn_GL286373 2003005 0 - 2117846 C e nomLeu3.chr7b 106705101 0 - 115148730 C a score=1422202.000000 s hg38.chr22_GL383582v2_alt 134434 281 + 162811 ccaggcgcagtggctcacgcctgtaataccagcactttgggaggccgaggtgggcggataacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatac------------------aaaaaaatt------agtcgggcgtggtggtaggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctggg-aggcagagattgcagt-----gagatcgcacca---------ctgcactccagcctgggcaaca--agcgagactctgtctcaaaaaaa s panTro5.chr22 28914333 281 + 37823149 ccgggcgcggcggctcacgcctgtaataccagcactttgggaggccgaggtgggtggataacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctgctaaaaatac------------------aaaaaaatt------agtcgggtgtggtagtaggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctggg-aggcagagattgcagt-----gagatcgcacca---------ctgcactccagcctgggcaaca--agcgagactctgtctcaaaaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41188874 280 + 50109623 ccgggcgcggtggctcacgcctgtaataccagcactttgggaggccgaggtgggcggataacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctattaaaaatac-------------------aaaaattt------agtcgggcgtggtggtaggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctggg-aggcagagattgcagt-----gagatcgcacca---------ctgcactccagcctgggcaaca--agcgagactctgtctcaaaaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3211722 282 + 4464012 ccgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggataacgaggtcaggagattgagaccatcctggctaacagagtgaaaccccgtctctattaaaaatac-----------------aaaaaaaatt------agtcgggcgtggtggtaggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctggg-aggcagagattgcagt-----cagatcgcacca---------ctgcactccagcctgagcaaca--agtgagactctgtctcaaaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323679 284 + 92844088 ccaggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatac------------------aaaaaaatt------agccaggcgtggtggtgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccagg-aggcagagcttgcagtaagccaagatcgcacca---------ctgcactccagcctgggtgaca-gagcgagactc---ctctcaaaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670047 284 - 96509753 ccaggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatac------------------aaaaaaatt------agccaggcgtggtggtgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccagg-aggcagagcttgcagtaagccgagatcgcacca---------ctgcactccagcctgggtgaca-gagcgagactc---ctctcaaaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167010 284 - 13098629 ccaggcatggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcggatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatac------------------aaaaaaatt------agccaggcgtggtggtgggcacctgtagtcccagctacttgggaggctgaggcaggagaatggcatgaacccagg-aggcagagcttgcagtaagccgagatcgcacca---------ctgcactccagcctgggtgaca-gagcgagactc---ctctcaaaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4126863 284 - 4483953 ccaggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaacccagtctctactaaaaatac------------------aaaaaaatt------agccaggcgtgggggtgggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcatgaacccagg-aggcagagcttgcagtgagccgagatcgcacca---------ctgcactccagcctgggtgaca-gagcgagactc---ctctcaaaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24756818 285 + 33263144 ccaggcgtggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccaccctggctaacacagtgaaaccccgtctctactaaaaatac------------------aaaaaaatt------agccaggcgtggtggtgggcacctgaagtcccagctactcgggaggctgaggcaggagaatggcatgaacccaggtaggcagagcttgcagtgagccgagatcgcacca---------ctgcactccagcctgggtgaca-gagcgagactc---gtctcaaaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14037823 284 - 14338769 ccaggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggtgggcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccctgtctctactaaaaatac------------------aaaaaaatt------agccaggcgtgggggtgggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcatgaacccagg-aggcagagcttgcagtgagccgagatcgcacca---------ctgcactccagcctgggtgaca-gagcgagactc---ctctcaaaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976510 284 + 1946073 ctaggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatac------------------aaaaaaatt------agccaagcgtggtggtgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtaaacccggg-aggcagagcttgcagtgagctgagatcgcacga---------ctgcactccagcctgggtgaca-gagcgagactc---gtctcaaaaa i colAng1.NW_012115588v1 C 0 C 0 s cebCap1.NW_016107750v1 1398357 288 - 1807191 ccaggcacagtggctcaagcctgtaatcccagcactttgggaggccaaggcgggtggatcacgaggtcaagagatcgagaccatcctggtcaacatggtgaaaccccgtctctactaaaaatac------------------aaaaacatt------agctgggcatggtggcgcgtgcctgtaatcccagctactcaggaggttggggcaggagaattgcctgaacccagg-aggcggaggttgcggtgagccgatatcgcgcca---------ttgcactctagcctgggtaacaagagtgaaactccgtctcaaaaaaa i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36336651 49 - 42659167 ---------------------------------AATTTAAGAGAC-----------GAT-ATCCCATCTGAAGACTGAA------CTGG-----------------------TACCAAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82862097 292 + 104043685 ccaggtatggtggtatactcctgtcatcacaacaa-ctggaaggctgaagaaggagggtcataaatttgaagtcacggtaagaaactggactacatagggaaaccccatctc----aaaaaCCCCACCCAACTTTTTCCCCCAAAAAAATTTAAGGGagccaggcatggtgacacacaactttaatctgagaacccaaggaggtaga---attaaaaaggcatatgtctgag-agttagagac-----------cagcctgctccatataccaagtttcaggccagtcaaagctaca-taatgagaccATATT--------- i mm10.chr15 C 0 C 0 e aotNan1.NW_018512389v1 28866 0 - 704494 C e dasNov3.JH570235 126842 0 + 1056298 C e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5131681 126 - 6317780 I e micMur3.chr7 5770095 35 + 108171978 I e saiBol1.JH378157 8914806 0 - 16357246 C e calJac3.chrUn_GL286373 2003005 0 - 2117846 C e nomLeu3.chr7b 106705101 0 - 115148730 C a score=9555.000000 s hg38.chr22_GL383582v2_alt 134715 1 + 162811 a s panTro5.chr22 28914614 1 + 37823149 a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189154 1 + 50109623 a i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212004 1 + 4464012 a i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323963 1 + 92844088 a i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670331 1 - 96509753 a i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167294 1 - 13098629 a i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127147 1 - 4483953 a i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757103 1 + 33263144 a i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038107 1 - 14338769 a i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976794 1 + 1946073 a i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8914806 1 - 16357246 a i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398645 1 - 1807191 a i cebCap1.NW_016107750v1 C 0 I 3 s aotNan1.NW_018512389v1 28866 1 - 704494 A i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36336700 1 - 42659167 A i otoGar3.GL873526 C 0 I 1 e mm10.chr15 82862389 0 + 104043685 C e dasNov3.JH570235 126842 0 + 1056298 C e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5131681 126 - 6317780 I e micMur3.chr7 5770095 35 + 108171978 I e calJac3.chrUn_GL286373 2003005 0 - 2117846 C e nomLeu3.chr7b 106705101 0 - 115148730 C a score=18630.000000 s hg38.chr22_GL383582v2_alt 134716 2 + 162811 aa s panTro5.chr22 28914615 2 + 37823149 aa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189155 2 + 50109623 aa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212005 2 + 4464012 aa i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323964 2 + 92844088 aa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670332 2 - 96509753 aa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167295 2 - 13098629 aa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127148 2 - 4483953 aa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757104 2 + 33263144 aa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038108 2 - 14338769 aa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976795 2 + 1946073 aT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003005 2 - 2117846 AA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914807 2 - 16357246 aa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398649 2 - 1807191 aa i cebCap1.NW_016107750v1 I 3 C 0 s aotNan1.NW_018512389v1 28867 2 - 704494 AA i aotNan1.NW_018512389v1 C 0 C 0 s mm10.chr15 82862389 2 + 104043685 AA i mm10.chr15 C 0 C 0 e dasNov3.JH570235 126842 0 + 1056298 C e canFam3.chr10 46143805 1402 - 69331447 I e otoGar3.GL873526 36336701 1 - 42659167 I e proCoq1.NW_012136747v1 5131681 126 - 6317780 I e micMur3.chr7 5770095 35 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=47505.000000 s hg38.chr22_GL383582v2_alt 134718 6 + 162811 TTTCCT s panTro5.chr22 28914617 6 + 37823149 TTTCCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189157 6 + 50109623 TTTCCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212007 6 + 4464012 TTTCCT i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323966 6 + 92844088 TTTCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670334 6 - 96509753 TTTCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167297 6 - 13098629 TTTCCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127150 6 - 4483953 TTTCCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757106 6 + 33263144 TTTCCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038110 6 - 14338769 TTTCCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976797 6 + 1946073 TTTCCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003007 6 - 2117846 TTTCCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914809 6 - 16357246 tttcct i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512389v1 28869 6 - 704494 TTTTCT i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5131807 6 - 6317780 TTTCCA i proCoq1.NW_012136747v1 I 126 C 0 s mm10.chr15 82862391 1 + 104043685 --T--- i mm10.chr15 C 0 C 0 e dasNov3.JH570235 126842 0 + 1056298 C e canFam3.chr10 46143805 1402 - 69331447 I e otoGar3.GL873526 36336701 1 - 42659167 I e micMur3.chr7 5770095 35 + 108171978 I e cebCap1.NW_016107750v1 1398651 0 - 1807191 C e nomLeu3.chr7b 106705101 0 - 115148730 C a score=668526.000000 s hg38.chr22_GL383582v2_alt 134724 53 + 162811 AAAAAATTTAAAAGATGATATCCCATCTGGTTAG-GTTAGGCTAAAGCTGGTAC s panTro5.chr22 28914623 53 + 37823149 AAAAAATTTAAAAGATGATATCCCATCTGGTTAG-GTTAGGCTAAAGCTGGTAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189163 53 + 50109623 AAAAAATTTAAAAGATGATATCCCATCTGGTTAC-GTTAGGCTAAAGCTGGTAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212013 53 + 4464012 AAAAAATCTAAAAGATGATATCCCATCTGGTTAG-GTTAGGCTAAAGCTGGTAC i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84323972 53 + 92844088 AAAAAATTTAAAAGATGATATCCCTTCTGGTTAG-GTTAGGCTACAGCTGGTAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670340 53 - 96509753 AAAAAATTTAAAAGATGATATCCCTTCTGGTTAG-GTTAGGCTACAGCTGGTAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167303 53 - 13098629 AAAAAATTTAAAAGATGATATCCCTTCTGGTTAG-GTTAGGCTACAGCTGGTAC i macNem1.NW_012012688v1 C 0 I 40 s cerAty1.NW_011999588v1 4127156 53 - 4483953 AAAAAATTTAAAAGATGATATCCCTTCTGGTTAG-GTTAGGCTACAGCTGGTAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757112 46 + 33263144 A-------TAAAAGATGATATCCCTTCAGGTTAG-GTTAGGCTACAGCTGGTAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038116 53 - 14338769 AAAAAATTTAAAAGATGATATCCCTTCTGGTTAG-GTTAGGCTACAGCTGGTAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976803 53 + 1946073 AAAAAATTTAAAAGATGATATCCCTTCTGGTTAG-GTTAGGCTACAGCTGGTAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003013 53 - 2117846 AAAAAATTTAAAAGATGATATCCCATCTGGTTAG-GTTAGGCTGAAGCTGGTAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914815 53 - 16357246 aaaaaatttaaaagatgatatcccatctggttag-gttaggctgaaggtggtac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398651 53 - 1807191 aaaaaTTTTAAAAGATGATATCCCATCTGGTTAG-GTTAGGCTGAAGGTGGTAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28875 53 - 704494 AAAAAATTTAAAAGATGATATCCCATCTGGTTAG-GTTAGGCTGAAGCTGGTAC i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5770130 53 + 108171978 AAAAGATTTAAGAGATGATATCCTATCTGGTGAG-GTTAGGCTCAAGCTGGTAT i micMur3.chr7 I 35 C 0 s proCoq1.NW_012136747v1 5131813 53 - 6317780 AAAAAATTTAAGAGATGATATCCTACCTAGTGAG-GTTAGGCTCAAGCTGTTAT i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82862392 52 + 104043685 -AACAACTTAAGAGACCATATCCCATCTGGTGAA-CTTAGGCTGAGGGTGGTAC i mm10.chr15 C 0 C 0 s dasNov3.JH570235 126842 54 + 1056298 aaaaaatttaagagataatattccatctggggggagtcagggtaaagttggtac i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46143805 1402 - 69331447 I e otoGar3.GL873526 36336701 1 - 42659167 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=-32921.000000 s hg38.chr22_GL383582v2_alt 134777 14 + 162811 aaaaaaaaaaaaaa s panTro5.chr22 28914676 7 + 37823149 -------aaaaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189216 4 + 50109623 ----------AAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212066 6 + 4464012 --------aaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84324025 5 + 92844088 ---------GGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670393 5 - 96509753 ---------GGGGG i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4127209 5 - 4483953 ---------GGGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757158 5 + 33263144 ---------AGGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038169 5 - 14338769 ---------GGGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 976856 5 + 1946073 ---------GGGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003066 3 - 2117846 -----------GAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8914868 3 - 16357246 -----------AAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398704 3 - 1807191 -----------AAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 28928 3 - 704494 -----------AAA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5770183 5 + 108171978 ---------GAAAA i micMur3.chr7 C 0 I 31 s proCoq1.NW_012136747v1 5131866 5 - 6317780 ---------GAAAA i proCoq1.NW_012136747v1 C 0 I 9 s mm10.chr15 82862444 1 + 104043685 -------------A i mm10.chr15 C 0 I 1 s dasNov3.JH570235 126896 3 + 1056298 -----------aaa i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46143805 1402 - 69331447 I e otoGar3.GL873526 36336701 1 - 42659167 I e macNem1.NW_012012688v1 7167356 40 - 13098629 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=219780.000000 s hg38.chr22_GL383582v2_alt 134791 33 + 162811 a---aaaaaaaaaaGCACCATAAATGATTATGACTC s panTro5.chr22 28914683 33 + 37823149 a---aaaaaaaaaaGCACCATAAATGATTATGACTC i panTro5.chr22 C 0 I 2 s panPan2.chr22 41189220 33 + 50109623 A---AAAAAAAAAAGCACCATAAATGATTATGACTC i panPan2.chr22 C 0 I 2 s gorGor5.CYUI01015375v1 3212072 33 + 4464012 a---aaaaaaaaaaGCAGCATAAATGATTATGACTC i gorGor5.CYUI01015375v1 C 0 I 2 s rheMac8.chr10 84324030 36 + 92844088 TAAAAAAAAAAAGCGCAGCATAAATGCTTATGACTC i rheMac8.chr10 C 0 I 2 s macFas5.chr10 87670398 35 - 96509753 T-AAAAAAAAAAGCGCAGCAGAAATGCTTATGACTC i macFas5.chr10 C 0 I 2 s cerAty1.NW_011999588v1 4127214 33 - 4483953 G---AAAAAAAAGCGCAGCATAAATGCTTATGACTC i cerAty1.NW_011999588v1 C 0 I 2 s chlSab2.chr19 24757163 33 + 33263144 G---AAAAAAAAGCGCAGCATAAATGCTTATGACTC i chlSab2.chr19 C 0 I 2 s manLeu1.NW_012102031v1 14038174 33 - 14338769 G---AAAAAAAAGCGCAGCATAAATGCTTATGACTC i manLeu1.NW_012102031v1 C 0 I 2 s colAng1.NW_012115588v1 976861 33 + 1946073 G---GAAAAAAAGCACAGCATAAATGATTATGACTC i colAng1.NW_012115588v1 C 0 I 2 s calJac3.chrUn_GL286373 2003069 33 - 2117846 A---AGTAACAAAAGCAGCAAAAAGGATGATAACTC i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8914871 33 - 16357246 A---AATAACAAAAGCTGCAAAAAGGATTATGACTG i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1398707 33 - 1807191 A---AATAACAAAAGCAGCAAAAAGGAGTATGACTC i cebCap1.NW_016107750v1 C 0 I 1 s aotNan1.NW_018512389v1 28931 30 - 704494 A---AAT---AAAAGCAGCAAAAAGGATTATGACTC i aotNan1.NW_018512389v1 C 0 I 1 s proCoq1.NW_012136747v1 5131880 21 - 6317780 ---------------CAGCATAAATGATCATGATTC i proCoq1.NW_012136747v1 I 9 I 1 s otoGar3.GL873526 36336702 33 - 42659167 ---AAAAAAAAAAGGCAGCATAAATTATCTTGACTC i otoGar3.GL873526 I 1 I 1 s mm10.chr15 82862446 33 + 104043685 ---ACATAACAAAAGCAGCAAACATTCTTACAATTC i mm10.chr15 I 1 C 0 s dasNov3.JH570235 126899 33 + 1056298 ---caataacaaaagcagcataaagcattacaacac i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46143805 1402 - 69331447 I e micMur3.chr7 5770188 31 + 108171978 I e macNem1.NW_012012688v1 7167356 40 - 13098629 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=969397.000000 s hg38.chr22_GL383582v2_alt 134824 105 + 162811 -TTGGAAAAGAAAACTGGTAAT-AAAAC-------------------------------------AGtcaaccaaacaa--aaaaac---------------aaaataccaacatattcactccagtaatatgtattagaagaaaaaactggca------acaacct s panTro5.chr22 28914718 105 + 37823149 -TTGGAAAAGAAAACTGGTAAT-AAAAC-------------------------------------AGtcaaccaaacaa--aaaaac---------------aaaataccaacatattcactccagtaatatgtattagaagaaaaaactggca------acaacct i panTro5.chr22 I 2 C 0 s panPan2.chr22 41189255 105 + 50109623 -TTGGAAAAGAAAACTGGTAAT-AAAAC-------------------------------------AGtcaaccaaacaa--aaaaac---------------aaaataccaacatattcactccagtaatatgtattagaagaaaaaactggca------acaacct i panPan2.chr22 I 2 C 0 s gorGor5.CYUI01015375v1 3212107 105 + 4464012 -TTGGAAAAGAAAACTGGTAAT-AAAAC-------------------------------------AGtcaaccaaacaa--aaaaac---------------aaaataccaacatatgcactccagtaatatgtattagaagaaaaaactggca------acaacct i gorGor5.CYUI01015375v1 I 2 C 0 s rheMac8.chr10 84324068 115 + 92844088 -TTGGAAAAGAAAACTGGTAAT-AAAAC-------------------------------------AATCAACCaaacaa--ccaaac--aaacaaac---aaaaaataccaacatattcactccagtaatacgtattagaagaaaaaactggca------acaacct i rheMac8.chr10 I 2 I 9 s macFas5.chr10 87670435 115 - 96509753 -TTGGAAAAGAAAACTGGTAAT-Aaaac-------------------------------------aatcaaccaaacaa--ccaacc--aaacaaac---aaaaaaTaccaacatattcactccagtaatacgtattagaagaaaaaactggca------acaacct i macFas5.chr10 I 2 I 9 s macNem1.NW_012012688v1 7167396 115 - 13098629 -TTGGAAAAGAAAACTGGTAAT-Aaaac-------------------------------------aatcaaccaaacaa--acaacc--aaccaaac---aaaaaaTaccaacatgttcactccagtaatacgtattagaagaaaaaactggca------acaacct i macNem1.NW_012012688v1 I 40 I 9 s cerAty1.NW_011999588v1 4127249 115 - 4483953 -TTGGAAAAGAAAACTGGTAAT-Aaaac-------------------------------------aatcaaccaaacaa--acaacc--aaccaaac---aaaaaaTaccaacatattcactccagtaatacgtattagaagaaaaaactggca------acaacct i cerAty1.NW_011999588v1 I 2 I 9 s chlSab2.chr19 24757198 115 + 33263144 -TTGGAAAAGAAAACTGGTAAT-Aaaac-------------------------------------aatcaaccaaccaa--ccaacc--aaccaaac---aaaaaataccaacaTATTCACTCCAGTAATACGTATTAGAAGAAAAAACTGGCA------ACAACCT i chlSab2.chr19 I 2 I 221 s manLeu1.NW_012102031v1 14038209 115 - 14338769 -TTGGAAAAGAAAACTGGTAAT-Aaaac-------------------------------------aatcaaccaaacaa--ccaacc--aaccaaac---aaAAAATaccaacatattcactccagtaatacgtattagaagaaaaaactggca------acaacct i manLeu1.NW_012102031v1 I 2 I 9 s colAng1.NW_012115588v1 976896 111 + 1946073 -TTGGAAAAGAAAACTGGTAAT-AAAAC-------------------------------------AATCAACCAAAcaa--aaaa----aaaaaaac-----aaaataccaacatattcactccagtaatacgtattagaagaaaaaactggca------acaacct i colAng1.NW_012115588v1 I 2 I 9 s calJac3.chrUn_GL286373 2003103 102 - 2117846 -TTGGAAAAGAAAGCTGGTAAT-AAA---------------------------------------AATCAACCAAACAA--AAAAC----------------AAAATACCAACATATTCACCCCAGCAATACGTATTAGAAGAAAAAACTGGCA------ACAATCT i calJac3.chrUn_GL286373 I 1 I 4 s saiBol1.JH378157 8914905 103 - 16357246 -TTGGAAAAGAAAACCGGTAATAAAA---------------------------------------AATCAACCaaacaa--aaaaa----------------aaaataccaacatattcaccccagcaatacatattagaagaaaaaactggca------acaatct i saiBol1.JH378157 I 1 I 3 s cebCap1.NW_016107750v1 1398741 97 - 1807191 -TTGGAAAAGAAAACTGGTAAT-TAA---------------------------------------AATCAACCAAACaa--aaaac----------------aaaataccaagatatt-----cagcaatacgtattagaggaaaaaactggca------acaatct i cebCap1.NW_016107750v1 I 1 I 4 s aotNan1.NW_018512389v1 28962 103 - 704494 -TTGGAAAAGAAAACTGGTAAT-AAA---------------------------------------AATCAACCAAACAA--AAAACA---------------AAAATaccaacatattcaccctagcaatacgtattagaagaaaaaactggca------acaatct i aotNan1.NW_018512389v1 I 1 I 4 s micMur3.chr7 5770219 106 + 108171978 -TTGGAAAAGCAAATTGGTAAT-AAAAT---------------------------------CTCAAACCAACCAACCAACCAAAAC----------------AAAATATCAATAAATTCACTTCAGTGAAATCTATGAGAAGGAAAAACTG---------TCAATC- i micMur3.chr7 I 31 C 0 s proCoq1.NW_012136747v1 5131902 115 - 6317780 -TTGGAAAAGCAAATTGGTAAT-AAAAT---------------------------------CTCAaaacaaccaaccaaacaaaac----------------aaaataccaacaaattcactccagtgatatctattagaaggaaaaactggcaataatctcaatc- i proCoq1.NW_012136747v1 I 1 C 0 s otoGar3.GL873526 36336736 104 - 42659167 -TTGCAAAAGTAAATTG---AT-AAAAT---------------------------------CCCAAAACAACCAAATGA--AAAAC----------------AAAATACCAACAAATTTACTTCAGTGATA---ATTAGAAGAAAAAATCGGCAATC---TCAAAC- i otoGar3.GL873526 I 1 C 0 s mm10.chr15 82862479 45 + 104043685 --TAAAGATATAAATTGGTAAT-TTAAA--------------------------------------------------A--------------------------------------TTGTTCCTGCAGGATCTGT------------------------------- i mm10.chr15 C 0 C 0 s dasNov3.JH570235 126932 156 + 1056298 ttcagaaaatcaatttggtaat-aaaaatattcatatcatttgatgcagtattttagttacttgaactttatcataagg--aaaactcaaaactaaccaaaaaaagtactaagatatttactccagtggtatatat--gaggaaaaaagtggca------acaacct i dasNov3.JH570235 C 0 I 11 e canFam3.chr10 46143805 1402 - 69331447 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=914848.000000 s hg38.chr22_GL383582v2_alt 134929 77 + 162811 atttgaaaattgattaaacaaattatggtatatccactcaaagaaatagtacataatcattttaaacaattgcaaag s panTro5.chr22 28914823 77 + 37823149 atttgaaaattgattaaacaaattatggtatatccactcaaagaaatagtacataatcattttaaacaattgcaaag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189360 77 + 50109623 atttgaaaattgattaaacaaattatggtatatccactcaaagaaatagtacataatcattttaaacaattgcaaag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212212 77 + 4464012 atttgaaaattgattaaacaatttatggtatatccactcaaagaaatagtacataatcattttaaacaattgcaaag i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84324192 75 + 92844088 atttgaaaattggttaagcaaattatggtatatccactcaaagaaatagtacataatca--ataaacaattgcaaag i rheMac8.chr10 I 9 C 0 s macFas5.chr10 87670559 75 - 96509753 atttgaaaattggttaagcaaattatggtatatccactcaaagaaatagtacataatca--ataaacaattgcaaag i macFas5.chr10 I 9 C 0 s macNem1.NW_012012688v1 7167520 75 - 13098629 atttgaaaattggttaagcaaattatggtatatccactcaaagaaatagtacataatca--ataaacaattgcaaag i macNem1.NW_012012688v1 I 9 C 0 s cerAty1.NW_011999588v1 4127373 75 - 4483953 atttgaaaattggttaagcaaattacggtatatccactcaaagaaatagtacataatca--ataaacaattgcaaag i cerAty1.NW_011999588v1 I 9 C 0 s chlSab2.chr19 24757534 75 + 33263144 ATTTGAAAATtggttaagcaaattatggtatatccactcaaagaaatagtacataatca--ataaacaattgcaaag i chlSab2.chr19 I 221 C 0 s manLeu1.NW_012102031v1 14038333 75 - 14338769 atttgaaaattggttaagcaaattatggtatatccactcaaagaaatagtacataatca--ataaacaattgcaaag i manLeu1.NW_012102031v1 I 9 C 0 s colAng1.NW_012115588v1 977016 75 + 1946073 atttgaaaattggttaagcaaattatggtatatccactcaaagaaatagtacataatca--ataaacaattgcaaag i colAng1.NW_012115588v1 I 9 C 0 s calJac3.chrUn_GL286373 2003209 73 - 2117846 ATTTCAAAACTGATTAAGCAAATTATGGTATATCCACTCAAGGAAATA----ATAATCATTATAAAGAATTGCAAAA i calJac3.chrUn_GL286373 I 4 C 0 s saiBol1.JH378157 8915011 73 - 16357246 atttcaaaattgattaagcacattatggtatatccactcaaagaaata----ataatcattataaataattgcaaag i saiBol1.JH378157 I 3 C 0 s cebCap1.NW_016107750v1 1398842 73 - 1807191 atttcaaaattgattaggcaaattatggtatatccactcaaagaaata----ataattattataaataattgcaaag i cebCap1.NW_016107750v1 I 4 C 0 s aotNan1.NW_018512389v1 29069 73 - 704494 atttcaaaattgattaagcaaattatggtatattcactcaaagaaata----ataatcattataaataattgcaaag i aotNan1.NW_018512389v1 I 4 C 0 s micMur3.chr7 5770325 76 + 108171978 ACTTgaaaa-tgattaaacaaattacggtatatccactcaaagagatagtacataatcactaaaaatgattgcaaag i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5132017 76 - 6317780 acttgaaaa-tgattacgcaaattatggtatatccactcaaagaaatagtacataatcactaaaaataattgcaaag i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36336840 70 - 42659167 ACT-------tgattaagcaaattatggcctatccactcaaagaaatagcacataatcattaaaaataatTGCAAAG i otoGar3.GL873526 C 0 I 144 s mm10.chr15 82862524 44 + 104043685 ----------------AGCAAATTATGGTATACCT-------TACACAGTGCATAATCA----------TTGTGAAG i mm10.chr15 C 0 C 0 s dasNov3.JH570235 127099 75 + 1056298 atttgaaaa-tgatt-ggcaaactttggtatagccactccatgaaatagtacacagttattaacagtaaatgcaaag i dasNov3.JH570235 I 11 C 0 e canFam3.chr10 46143805 1402 - 69331447 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=216547.000000 s hg38.chr22_GL383582v2_alt 135006 18 + 162811 actctagcaccatagaaa s panTro5.chr22 28914900 18 + 37823149 actctagcaccatggaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189437 18 + 50109623 actctagcaccatggaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212289 18 + 4464012 actctagcaccatggaaa i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84324267 18 + 92844088 attctagcaccatggaac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670634 18 - 96509753 attctagcaccatggaac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167595 18 - 13098629 attctagcaccatggaac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127448 18 - 4483953 attctagcaccatggaac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757609 18 + 33263144 attctagcaccatggaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038408 18 - 14338769 attctagcaccatggaac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 977091 18 + 1946073 attctagcaccatggaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003282 18 - 2117846 ACTCTAGCATCATAAAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8915084 18 - 16357246 actctagcatcataaaaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398915 18 - 1807191 actctagcgtcataaaag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29142 18 - 704494 actctagcatcataaaaa i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5770401 18 + 108171978 attcttgcaccatggaaa i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5132093 18 - 6317780 attcttgcaccatggaaa i proCoq1.NW_012136747v1 C 0 I 30 s otoGar3.GL873526 36337054 18 - 42659167 ATCCTTGCTCTATGAAAA i otoGar3.GL873526 I 144 I 6 s mm10.chr15 82862568 14 + 104043685 ATTCTAGCCACATG---- i mm10.chr15 C 0 C 0 s dasNov3.JH570235 127174 18 + 1056298 attgtagcaccatggaaa i dasNov3.JH570235 C 0 I 6 e canFam3.chr10 46143805 1402 - 69331447 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=27846.000000 s hg38.chr22_GL383582v2_alt 135024 2 + 162811 at s panTro5.chr22 28914918 2 + 37823149 at i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189455 2 + 50109623 at i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212307 2 + 4464012 at i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84324285 2 + 92844088 at i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670652 2 - 96509753 at i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167613 2 - 13098629 at i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127466 2 - 4483953 at i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757627 2 + 33263144 at i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038426 2 - 14338769 at i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 977109 2 + 1946073 at i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003300 2 - 2117846 AT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8915102 2 - 16357246 at i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398933 2 - 1807191 at i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29160 2 - 704494 at i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5770419 2 + 108171978 at i micMur3.chr7 C 0 I 248 s otoGar3.GL873526 36337078 2 - 42659167 AT i otoGar3.GL873526 I 6 C 0 s dasNov3.JH570235 127198 2 + 1056298 at i dasNov3.JH570235 I 6 C 0 e mm10.chr15 82862582 0 + 104043685 C e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5132111 30 - 6317780 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=257589.000000 s hg38.chr22_GL383582v2_alt 135026 28 + 162811 tacgtagtatcagatgaaaagagcagct s panTro5.chr22 28914920 28 + 37823149 tacgtagtatcagatgaaaagagcagct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189457 28 + 50109623 tacgtagtatcagatgaaaagagcagct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212309 28 + 4464012 tacgtagtatcagatgaaaagagcagct i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84324287 28 + 92844088 tacgtagtatcacatgaaaagagcagct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670654 28 - 96509753 tacgtagtatcacatgaaaagagcagct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167615 28 - 13098629 tacgtagtatcacatgaaaagagcagct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127468 28 - 4483953 tacgtagtatcacatgaaaagagcagct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757629 28 + 33263144 tacatagtatcacatgaaaagagcagct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038428 28 - 14338769 tacgtagtatcacatgaaaagagcagct i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 977111 28 + 1946073 tacatagtatcacatgaaaagagcagct i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003302 28 - 2117846 TTCATAGTACCAGATGAAAAGAACAGCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8915104 28 - 16357246 tatgtagtatccgatgaaaagaacagct i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398935 28 - 1807191 tatgtagtatcagatgaaaagaacagct i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29162 28 - 704494 tatgtagtatcagatgaaaagaacagct i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36337080 24 - 42659167 TATATAACATCAAAT----ACAGCAGCC i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 127200 24 + 1056298 tatgtatagtcagatgg--agaacag-- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862582 0 + 104043685 C e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5132111 30 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=908643.000000 s hg38.chr22_GL383582v2_alt 135054 79 + 162811 cacgtaaacttatacctgt----gctatgattataac--------t--atctgaaaatgaggcattcatttagtcccaggccaaagggaataa s panTro5.chr22 28914948 79 + 37823149 cacgtaaacttatacctgt----gctatgattataac--------t--atctgaaaatgaggcattcatttagtcccaggccaaagggaataa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189485 79 + 50109623 cacgtaaacttatacctgt----gctatgattataac--------t--atctgaaaatgaggcattcatttattcccaggccaaagggaataa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212337 79 + 4464012 catgtaaacttatacctgt----gctatgattataac--------t--atctgaaaatgaggcattcatttagtcccaggccaaagggaataa i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84324315 79 + 92844088 cacataaactcatacctgt----gctatgattataac--------t--atctgaaaatgaggcattcatttagtcccaggccaaagggaataa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670682 79 - 96509753 cacataaactcatacctgt----gctatgattataac--------t--atctgaaaatgaggcattcatttagtcccaggccaaagggaataa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167643 79 - 13098629 cacataaactcatacctgt----gctatgattataac--------t--atctgaaaatcaggcattcatttagtcccaggccaaagggaataa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127496 79 - 4483953 cacataaactcatacctgt----gctatgattataac--------t--atctgaaaatgaggcattcatttagtcccaggcaaaagggaataa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757657 79 + 33263144 cacataaactcatacctgt----gctatgattataac--------t--atctgaaaatgaggcattcatttagtcccaggccaaagggaataa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038456 79 - 14338769 cacataaactcatacctgt----gctatgattataac--------c--atctgaaaatgaggcattcatttagtcccaggccaaagggaataa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 977139 79 + 1946073 cacataaactcatacctgt----gctatgattataac--------t--atctgaaaatgaggcattcatttagtcccaagccaaaggaaataa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003330 78 - 2117846 CACATCAACTCACACCTGT----GCAATGATTATAAC--------C--ATCTG-AAATGAGGCATTCATTTAGTCCCAGGACAAAGGGAACAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8915132 86 - 16357246 cacatcaactcatacctgt----gctatgattataacttatgctat--aagtg-aaatgaggcattcacttagtcccaggacaaaggaaacaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1398963 78 - 1807191 cacatcaactcatacctgt----gctatgattataat--------c--atctg-aaatgaggcattcacttagtcccaggccaaagggaacaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29190 78 - 704494 cacatcaactcatacctgt----gctatgattataac--------c--atctg-aaatgaggcattcatttagtcccaagccaaagggaacaa i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5132141 79 - 6317780 catataaacttatacctgt----gctatgattaaaac--------t--atcttgaaacaaggcattcatttagtcctgggccaaagggaataa i proCoq1.NW_012136747v1 I 30 I 152 s otoGar3.GL873526 36337104 79 - 42659167 --TATAAACTCATACCAGCGAGAGTTGAGGCTTCAAC--------T--CTCTTGAAAC-AGGCATTCATTTAGTCCTGGGCTGAA-GGAATAA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82862582 71 + 104043685 -----AAATACATACTTGT----GCTATGG-----AC--------TGCATATAAAAATTGGACATTCTTATAGATGGAGGACAAAGGAAATGA i mm10.chr15 C 0 I 1 s dasNov3.JH570235 127224 78 + 1056298 caaatagactcattcctgt----gctatgattctaac--------t--atctagaaattag-cattcattttgtccaaggccaaagggaagag i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46143805 1402 - 69331447 I e micMur3.chr7 5770421 248 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=219968.000000 s hg38.chr22_GL383582v2_alt 135133 26 + 162811 tggagaaaaaaggaaaacttctggac s panTro5.chr22 28915027 26 + 37823149 tggagaaaaatggaaaacttctggac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189564 26 + 50109623 tggagaaaaatggaaaacttctggac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212416 26 + 4464012 tggagaaaaatggaaaacttctggac i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84324394 26 + 92844088 tggagaaaaatggaaaACTTCTGGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670761 26 - 96509753 tggagaaaaatggaaaACTTCTGGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167722 26 - 13098629 tggagaaaaatggaaaACTTCTGGAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127575 26 - 4483953 tggagaaaaatggaaaACTTCTGGAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757736 26 + 33263144 tggagaaaaatggaaaACTTCTGGAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038535 26 - 14338769 tggagaaaaatggaaaACTTCTGGAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 977218 26 + 1946073 tggagaaaaatggaaaACTTCTGGAC i colAng1.NW_012115588v1 C 0 I 492 s calJac3.chrUn_GL286373 2003408 25 - 2117846 TGG-GGAAAACAGAAATCTTCTGGAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8915218 25 - 16357246 tgg-ggaaaacggaaatcttctggac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399041 22 - 1807191 tgg-ggagaacggaaa---cctggac i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29268 25 - 704494 tgg-ggaaaacggaaaccttctggac i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36337183 25 - 42659167 CAAAGAAAAAT-GAAACTTTTTTGAC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82862654 23 + 104043685 TG--GAAAAATGAAAACCTTTTGAT- i mm10.chr15 I 1 C 0 s dasNov3.JH570235 127302 25 + 1056298 taaggaaaaattaaaaacttttgat- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=153049.000000 s hg38.chr22_GL383582v2_alt 135159 19 + 162811 tatccaagatggcagtgtt s panTro5.chr22 28915053 19 + 37823149 tatccaaggtggcagcgtt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189590 19 + 50109623 tatccaaggtggcagcgtt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212442 19 + 4464012 tatccaaggtggcagcatt i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84324420 19 + 92844088 CATCCAAGGGGGCAGCATT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670787 19 - 96509753 CATCCAAGGGGGCAGCATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167748 19 - 13098629 CATCCAAGGGGGCAGCATT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127601 19 - 4483953 CATCCAAGGGGGCAGCATT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757762 19 + 33263144 CATCCAAGGGGGCAGCATT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038561 19 - 14338769 CACCCAAGGGGGCAGCATT i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2003433 19 - 2117846 TACCCAAAGTGGCAGAATT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8915243 19 - 16357246 tacccaaagtggcagaact i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399063 19 - 1807191 tacccaaagtggcagaatt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29293 19 - 704494 cactcaaagtggcagaatt i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36337208 19 - 42659167 TATCCACTGTGGCAAGATG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82862677 19 + 104043685 GATCTACAGTGGCAGGATT i mm10.chr15 C 0 I 10835 s dasNov3.JH570235 127327 19 + 1056298 tatccatggagtcaggatt i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e colAng1.NW_012115588v1 977244 492 + 1946073 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=55883.000000 s hg38.chr22_GL383582v2_alt 135178 7 + 162811 gtggaag s panTro5.chr22 28915072 7 + 37823149 gtggaag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189609 7 + 50109623 gtggaag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212461 7 + 4464012 gtggaag i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84324439 7 + 92844088 GTGAAAG i rheMac8.chr10 C 0 I 10 s macFas5.chr10 87670806 7 - 96509753 GTGAAAG i macFas5.chr10 C 0 I 1 s macNem1.NW_012012688v1 7167767 7 - 13098629 GTGAAAG i macNem1.NW_012012688v1 C 0 I 1 s cerAty1.NW_011999588v1 4127620 7 - 4483953 GTGAAAG i cerAty1.NW_011999588v1 C 0 I 1 s chlSab2.chr19 24757781 7 + 33263144 GTGGAAG i chlSab2.chr19 C 0 I 1 s manLeu1.NW_012102031v1 14038580 7 - 14338769 GTGAAAG i manLeu1.NW_012102031v1 C 0 I 1 s calJac3.chrUn_GL286373 2003452 7 - 2117846 GTGGAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8915262 7 - 16357246 gtggagc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399082 7 - 1807191 gtagaag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29312 7 - 704494 gtggaag i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36337227 7 - 42659167 GTAAATG i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 127346 7 + 1056298 gtgaatg i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e colAng1.NW_012115588v1 977244 492 + 1946073 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=26961.000000 s hg38.chr22_GL383582v2_alt 135185 8 + 162811 tatttttt s panTro5.chr22 28915079 8 + 37823149 tatttttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189616 8 + 50109623 tatttttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212468 8 + 4464012 tatttttt i gorGor5.CYUI01015375v1 C 0 I 1 s macFas5.chr10 87670814 7 - 96509753 TGTTGTT- i macFas5.chr10 I 1 C 0 s macNem1.NW_012012688v1 7167775 7 - 13098629 TGTTGTT- i macNem1.NW_012012688v1 I 1 C 0 s cerAty1.NW_011999588v1 4127628 7 - 4483953 TGTTGTT- i cerAty1.NW_011999588v1 I 1 I 7 s chlSab2.chr19 24757789 7 + 33263144 TGTTttt- i chlSab2.chr19 I 1 C 0 s manLeu1.NW_012102031v1 14038588 7 - 14338769 TGTTGTT- i manLeu1.NW_012102031v1 I 1 C 0 s calJac3.chrUn_GL286373 2003459 8 - 2117846 TATTTTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8915269 8 - 16357246 tatttttt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399089 8 - 1807191 tatttttt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29319 8 - 704494 tatttttt i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36337234 7 - 42659167 TATTTCT- i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 127353 7 + 1056298 tattttc- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e colAng1.NW_012115588v1 977244 492 + 1946073 I e rheMac8.chr10 84324446 10 + 92844088 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=58992.000000 s hg38.chr22_GL383582v2_alt 135193 45 + 162811 ccccttttcatttctatttacattaatttttgtgt------aggaaataaT s panTro5.chr22 28915087 45 + 37823149 ccccttttcatttctatttacattaatttttgtgt------aggaaataaT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189624 45 + 50109623 ccccttttCATTTCTATTTACATTAATTTTTGCGT------AGGAAATAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212477 45 + 4464012 ccccttttcatttctatttacattaatttttgtgt------aggaaataaT i gorGor5.CYUI01015375v1 I 1 C 0 s macFas5.chr10 87670821 2 - 96509753 ---------------------------------Gt---------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167782 8 - 13098629 ---------------------------------Gtttttgg---------- i macNem1.NW_012012688v1 C 0 C 0 s chlSab2.chr19 24757796 9 + 33263144 --------------------------tttttctgt---------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038595 8 - 14338769 --------------------------Gtttt-tgt---------------- i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2003467 42 - 2117846 -CCCTTTTCATT--TGTTTACATTACTTTTTGTGT------AGGAAATAAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8915277 42 - 16357246 -cccttttcatt--tgtttaCATTACTTTTTGTGT------AGGAAATAAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399097 42 - 1807191 -cccttttCATT--TGTTTACATTACTTTTTGTGT------AGGAAATAAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29327 42 - 704494 -cccttttCATT--TGTTTACATTACTTTTTGTGT------AGGAAATAAT i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36337241 44 - 42659167 -CCCTTTTCACTTCTATTTACATTAATGTTTGTGT------AGAGATTCAT i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 127360 41 + 1056298 ccccttctCATTCCTATTTATA----TGCTTGTGT------AGAGaataat i dasNov3.JH570235 C 0 I 36 e mm10.chr15 82862696 10835 + 104043685 I e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e colAng1.NW_012115588v1 977244 492 + 1946073 I e cerAty1.NW_011999588v1 4127635 7 - 4483953 I e rheMac8.chr10 84324446 10 + 92844088 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=10476.000000 s hg38.chr22_GL383582v2_alt 135238 3 + 162811 CAC s panTro5.chr22 28915132 3 + 37823149 CAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189669 3 + 50109623 CAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212522 3 + 4464012 CAC i gorGor5.CYUI01015375v1 C 0 C 0 s calJac3.chrUn_GL286373 2003509 3 - 2117846 CAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8915319 3 - 16357246 CAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399139 3 - 1807191 CAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29369 3 - 704494 CAC i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36337285 3 - 42659167 CAC i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 127401 36 + 1056298 I e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e colAng1.NW_012115588v1 977244 492 + 1946073 I e manLeu1.NW_012102031v1 14038603 0 - 14338769 C e chlSab2.chr19 24757805 0 + 33263144 C e cerAty1.NW_011999588v1 4127635 7 - 4483953 I e macNem1.NW_012012688v1 7167790 0 - 13098629 C e macFas5.chr10 87670823 0 - 96509753 C e rheMac8.chr10 84324446 10 + 92844088 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=5096.000000 s hg38.chr22_GL383582v2_alt 135241 2 + 162811 tt s panPan2.chr22 41189672 2 + 50109623 tt i panPan2.chr22 C 0 C 0 s rheMac8.chr10 84324456 2 + 92844088 tt i rheMac8.chr10 I 10 C 0 s macFas5.chr10 87670823 2 - 96509753 tt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167790 2 - 13098629 tt i macNem1.NW_012012688v1 C 0 C 0 s chlSab2.chr19 24757805 2 + 33263144 tt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038603 2 - 14338769 tt i manLeu1.NW_012102031v1 C 0 C 0 s otoGar3.GL873526 36337288 2 - 42659167 TT i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 29372 0 - 704494 C e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 127401 36 + 1056298 I e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e cebCap1.NW_016107750v1 1399142 0 - 1807191 C e saiBol1.JH378157 8915322 0 - 16357246 C e calJac3.chrUn_GL286373 2003512 0 - 2117846 C e colAng1.NW_012115588v1 977244 492 + 1946073 I e cerAty1.NW_011999588v1 4127635 7 - 4483953 I e nomLeu3.chr7b 106705101 0 - 115148730 C e gorGor5.CYUI01015375v1 3212525 0 + 4464012 C e panTro5.chr22 28915135 0 + 37823149 C a score=3276.000000 s hg38.chr22_GL383582v2_alt 135243 1 + 162811 t s panPan2.chr22 41189674 1 + 50109623 t i panPan2.chr22 C 0 C 0 s rheMac8.chr10 84324458 1 + 92844088 t i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670825 1 - 96509753 t i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167792 1 - 13098629 t i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127642 1 - 4483953 t i cerAty1.NW_011999588v1 I 7 C 0 s chlSab2.chr19 24757807 1 + 33263144 t i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038605 1 - 14338769 t i manLeu1.NW_012102031v1 C 0 C 0 s otoGar3.GL873526 36337290 1 - 42659167 T i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 29372 0 - 704494 C e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 127401 36 + 1056298 I e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e cebCap1.NW_016107750v1 1399142 0 - 1807191 C e saiBol1.JH378157 8915322 0 - 16357246 C e calJac3.chrUn_GL286373 2003512 0 - 2117846 C e colAng1.NW_012115588v1 977244 492 + 1946073 I e nomLeu3.chr7b 106705101 0 - 115148730 C e gorGor5.CYUI01015375v1 3212525 0 + 4464012 C e panTro5.chr22 28915135 0 + 37823149 C a score=333720.000000 s hg38.chr22_GL383582v2_alt 135244 63 + 162811 tttttttttttttttgagacagagtcttacactg-cact---gctggagtgcagtggtgcaatcttg s panTro5.chr22 28915135 60 + 37823149 ---ttttttttttttgagacagagtcttgcactg-cact---gctggagtgcagtggtgcaatcttg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189675 63 + 50109623 tttttttttttttttgagacagagtcttgcactg-cact---gctggagtgcagtggtgcaatcttg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212525 61 + 4464012 --tttttttttttttgagacagagtcttgcactg-cact---gctggagtgcagtggtgcaatcttg i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84324459 67 + 92844088 tggttttttttttttgagacagagtatcactctgtcacccaggctggtgtgcagtgctgcaatctca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670826 67 - 96509753 tggttttttttttttgagacagagtatcactctgtcacccaggctggtgtgcagtgctgcaatctca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167793 67 - 13098629 tggttttttttttttgagacagagtatcactctgtcacccaggctggtgtgcagtgctgcaatctca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127643 67 - 4483953 ttttgttttttttttgagacagagtatcactctgtcacccaggctggtgtgcagtgcagcaatctca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757808 67 + 33263144 tttgtttttttttttgagacagagtatcactctgtcacccaggctggtgtgcagtgctgcaatctca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038606 64 - 14338769 t---gttttttttttgagacagagtatcactctgtcacccaggctggtgtgcagtgctgcaatctca i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2003512 63 - 2117846 --tttttggttctttgagac--agtctcaccctgtcacccaggctggagtgcagtggcacgatctcg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8915322 63 - 16357246 --tttttggttttttcaaac--agtctcaccctgtcacccaggctggagcacagtggcgcgatcttg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399142 63 - 1807191 --tttttggttttttaagac--agtctcaccctgtcaccgaggctggagcgcagtagcctgatcttg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29372 63 - 704494 --tttttggttttttgagac--agtctcaccctgtcacccaggctggagtgcagtggcacgatctcg i aotNan1.NW_018512389v1 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 127401 36 + 1056298 I e canFam3.chr10 46143805 1402 - 69331447 I e otoGar3.GL873526 36337291 0 - 42659167 C e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e colAng1.NW_012115588v1 977244 492 + 1946073 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=325112.000000 s hg38.chr22_GL383582v2_alt 135307 34 + 162811 gctcactgtagcctctgcctcccaggttcaagca s panTro5.chr22 28915195 34 + 37823149 gctcactgtagcctctgcctcccaggttcaagca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189738 34 + 50109623 gctcactgtagcctctgcctcccaggctcaagca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212586 34 + 4464012 gctcactgtagcctctgcctcccaggttcaagca i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84324526 34 + 92844088 gctcactgtagcctctgcctcccaggttcaagca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670893 34 - 96509753 gctcactgtagcctctgcctcccaggttcaagca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167860 34 - 13098629 gctcactgtagcctctgcctcccaggttcaagca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127710 34 - 4483953 gctcactgtagcctctgcctcccaggttcaagca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757875 34 + 33263144 gctcactgtagcctctgcctcccaggttcaagca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038670 34 - 14338769 gctcactgtagcctctgcctcccaggttcaagca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 977736 34 + 1946073 gctcactgtagcctctgcctcccaggttcaagca i colAng1.NW_012115588v1 I 492 C 0 s calJac3.chrUn_GL286373 2003575 34 - 2117846 gctcactgcagcctctgccttccaggtttaagca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8915385 34 - 16357246 gctcactgcagcctctgccttccaggtttaagca i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399205 34 - 1807191 gctcactgcagcctctgccttccaggtttaagca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29435 34 - 704494 gctcactgcagcctctgccttccaggtttaagca i aotNan1.NW_018512389v1 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 127401 36 + 1056298 I e canFam3.chr10 46143805 1402 - 69331447 I e otoGar3.GL873526 36337291 0 - 42659167 C e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e nomLeu3.chr7b 106705101 0 - 115148730 C a score=1725244.000000 s hg38.chr22_GL383582v2_alt 135341 175 + 162811 attctcctgcctcagcctcccaagtagctgagattacaggtgcctgccaccacgtccggctaatttttgtat-ttttagtagagacagcatttcgccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgcgattacagg s panTro5.chr22 28915229 175 + 37823149 attctcctgcctcagcctcccaagtagctgagattacaggtgcctgccaccacgtccagctaatttttgtat-ttttagtagagacagcatttcgccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgggattacagg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189772 175 + 50109623 attctcctgcctcagcctcccaagtagctgagattacaggtgcctgccaccacctccggctaatttttgtat-ttttagtagagacagcatttcgccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgggattacagg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212620 175 + 4464012 attctcctgcctcagcctcccaagtagctgagattacaggtgcctgccaccacgtctggctaatttttgtat-ttttagtagagacagcatttcgccatattggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgggattatagg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705101 175 - 115148730 attcttctgcctcagcctcccaagtagctgagattacaggtacctgccaccacgcccagctaatttttgtat-ttttagtagagatagcatttcgccatgttggccaggctggtcttgaactcctgacctcaagtgagccacctgtcttggcttcccaaagtgctgggattacagg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84324560 175 + 92844088 attctcctgcctcagcctcccaaggagctgagactacaggcgcccgccaccacacctggctcatttttttat-ttttattagagatagcattttgccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgggattaccgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87670927 175 - 96509753 attctcctgcctcagcctcccaaggagctgagactacaggcgcccgccaccacacctggctcatttttttat-ttttattagagatagcattttgccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgggattaccgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7167894 175 - 13098629 attctcctgcctcagcctcccaaggagctgagactacaggcgcccgccaccacacctggctcatttttttat-ttttattagagatagcattttgccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgggattaccgg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127744 175 - 4483953 attctcctgcctcagcctcccaaagagctgagactacaggcgcctgccaccacacctggctcattttttaat-ttttattagagatagcattttgccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgggattaccgc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24757909 175 + 33263144 attctcctgcctcagcctcccaaggagctgagactacaggcgcccgccaccacacctggctcatttttaaat-ttttattagagatagcattttgccacgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgggattaccag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038704 175 - 14338769 attctcctgcctcagcctcccaaggagctgagactacaggcgcccgccaccacacctggctcatttttttat-ttttattagagatagcattttgccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgggattaccgg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 977770 175 + 1946073 attctcctgcctcagcctcccaaggagctgagactacaggcgcctgccaccacacctggctcattcttgtat-ttttattagagatagcattttgccgtgttggccaggctggtcttgaactcctgacctcaagcgatccacctgtcttggcttcccaaagtgctgggattaccgg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003609 175 - 2117846 attttcctgcctcagcctcccaagtagctgggattacaggcgcgtgccaccatgcctggctaatttttgtac-ttttggtagagacagcattttgccatgttggccaggctagtcttgaactcttgacttcaagtgatccacctgtctgggcctcccaaagttctgggattacagg i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8915419 174 - 16357246 atgctcctgcctcagcctcccaagtagttgggattacaggcacgtgccaccacgcctggctaatttttgtac-ttttggtagagacagcatttcgttatgttggcc-gactggtcttgaactcctgacttcaagtgatccacctgtctgggcctcccaaagttctgggattacagg i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1399239 176 - 1807191 attctcctgcctcagcctcccaagtagcagggattacaggcacatgccaccacgcctggctaatttttatactttttggtagaaacagcatttcgtcatgttggccagagtggtcttgaactcctgacttcaagtgatccacctgtctgggcctcccaaagttctgggattacagg i cebCap1.NW_016107750v1 C 0 I 35 s aotNan1.NW_018512389v1 29469 175 - 704494 attctcctgcctcagcctcccaagtagctgggattacaggcgtgtgccactatgcctggttaatttttgtac-ttttggtagagacagcatttcgccatgttggccaggctggtcttgaactcctgacttcaagtgatccacctgtctgggcctcccaaagttctgggattacagg i aotNan1.NW_018512389v1 C 0 I 35 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 127401 36 + 1056298 I e canFam3.chr10 46143805 1402 - 69331447 I e otoGar3.GL873526 36337291 0 - 42659167 C e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I a score=120922.000000 s hg38.chr22_GL383582v2_alt 135516 20 + 162811 gtgagccacagtgctcagcc s panTro5.chr22 28915404 20 + 37823149 gtgagccacagtgctcagcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189947 20 + 50109623 gtgagccacagtgctcagcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212795 20 + 4464012 gtgagccacagtgctcagcc i gorGor5.CYUI01015375v1 C 0 I 1 s nomLeu3.chr7b 106705276 20 - 115148730 gtgaggcacagtgctcggcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84324735 20 + 92844088 gtgagccacagcacttggcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671102 20 - 96509753 gtgagccacagcacttggcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168069 20 - 13098629 gtaagccacagcacttggcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127919 20 - 4483953 gtgagccacagcacttggcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758084 20 + 33263144 gtgagccacagcacttggcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038879 20 - 14338769 gtgagccacagcacttggcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 977945 20 + 1946073 gtgagccacagtacttggcc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003785 20 - 2117846 atgaaccacagagtctggcc i calJac3.chrUn_GL286373 I 1 I 14 s saiBol1.JH378157 8915594 18 - 16357246 acgaac--caGAGTCTGACC i saiBol1.JH378157 I 1 I 14 e aotNan1.NW_018512389v1 29644 35 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 127401 36 + 1056298 I e canFam3.chr10 46143805 1402 - 69331447 I e otoGar3.GL873526 36337291 0 - 42659167 C e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e cebCap1.NW_016107750v1 1399415 35 - 1807191 I a score=208264.000000 s hg38.chr22_GL383582v2_alt 135536 21 + 162811 AAAATGTCATTAACCTCATTT s panTro5.chr22 28915424 21 + 37823149 AAAATGTCATTAACCTCATTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189967 21 + 50109623 AAAATGTCATTAACCTCATTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212816 21 + 4464012 AAAATGTCATTAACCTCATTT i gorGor5.CYUI01015375v1 I 1 C 0 s nomLeu3.chr7b 106705296 21 - 115148730 AAAATGTCATTAACCTCATTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84324755 21 + 92844088 AAAATGTCATTAACCTCATTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671122 21 - 96509753 AAAATGTCATTAACCTCATTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168089 21 - 13098629 AAAATGTCATTAACCTCATTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127939 21 - 4483953 AAAATGTCATTAACCTCATTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758104 21 + 33263144 AAAATGTCATTAACCTCATTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038899 21 - 14338769 AAAATGTCATTAACCTCATTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 977965 21 + 1946073 AAAATGTCATTAACCTCATTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003819 21 - 2117846 AAACTGTCATTAACCTAATTT i calJac3.chrUn_GL286373 I 14 C 0 s saiBol1.JH378157 8915626 16 - 16357246 AAAATGTCAATAACTT----- i saiBol1.JH378157 I 14 C 0 s cebCap1.NW_016107750v1 1399450 21 - 1807191 AAAATGTCATTAACCTCATTT i cebCap1.NW_016107750v1 I 35 C 0 s aotNan1.NW_018512389v1 29679 21 - 704494 AAAATGTCATTAACCTCATTT i aotNan1.NW_018512389v1 I 35 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 127401 36 + 1056298 I e canFam3.chr10 46143805 1402 - 69331447 I e otoGar3.GL873526 36337291 0 - 42659167 C e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I a score=51131.000000 s hg38.chr22_GL383582v2_alt 135557 17 + 162811 AAAAATTACAACCCTTA s nomLeu3.chr7b 106705317 17 - 115148730 AAAAATTACAACCCTTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84324776 17 + 92844088 TAAAATTACAACCCTTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671143 17 - 96509753 TAAAATTACAACCCTTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168110 17 - 13098629 AAAAATTACAACCCTTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127960 17 - 4483953 AAAAATTACAACCCTTA i cerAty1.NW_011999588v1 C 0 C 0 s manLeu1.NW_012102031v1 14038920 17 - 14338769 AAAAATTACAACCCTTA i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2003840 17 - 2117846 AAAAATGACAACCCTTA i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1399471 17 - 1807191 AAAAATGACAACCCTTA i cebCap1.NW_016107750v1 C 0 I 24 e aotNan1.NW_018512389v1 29700 0 - 704494 C e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 127401 36 + 1056298 I e canFam3.chr10 46143805 1402 - 69331447 I e otoGar3.GL873526 36337291 0 - 42659167 C e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e saiBol1.JH378157 8915642 0 - 16357246 C e colAng1.NW_012115588v1 977986 0 + 1946073 C e chlSab2.chr19 24758125 0 + 33263144 C e gorGor5.CYUI01015375v1 3212837 0 + 4464012 C e panPan2.chr22 41189988 0 + 50109623 C e panTro5.chr22 28915445 0 + 37823149 C a score=23286.000000 s hg38.chr22_GL383582v2_alt 135574 305 + 162811 ggccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgaca-gagcgagactccgtctcaaaaaaaaaaaaaaaaa s saiBol1.JH378157 8915642 298 - 16357246 -gccgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaagagatcgagaccatcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggcatggtggcacgtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgcggtgagccgagatcgcgccattgcactcca-------gcctgggtaacaagagcgaaactccgtctcaaaaaaaaaaaaaaaaa i saiBol1.JH378157 C 0 I 25 e aotNan1.NW_018512389v1 29700 0 - 704494 C e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 127401 36 + 1056298 I e canFam3.chr10 46143805 1402 - 69331447 I e otoGar3.GL873526 36337291 0 - 42659167 C e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e cebCap1.NW_016107750v1 1399488 24 - 1807191 I e calJac3.chrUn_GL286373 2003857 0 - 2117846 C e colAng1.NW_012115588v1 977986 0 + 1946073 C e manLeu1.NW_012102031v1 14038937 0 - 14338769 C e chlSab2.chr19 24758125 0 + 33263144 C e cerAty1.NW_011999588v1 4127977 0 - 4483953 C e macNem1.NW_012012688v1 7168127 0 - 13098629 C e macFas5.chr10 87671160 0 - 96509753 C e rheMac8.chr10 84324793 0 + 92844088 C e nomLeu3.chr7b 106705334 0 - 115148730 C e gorGor5.CYUI01015375v1 3212837 0 + 4464012 C e panPan2.chr22 41189988 0 + 50109623 C e panTro5.chr22 28915445 0 + 37823149 C a score=3276.000000 s hg38.chr22_GL383582v2_alt 135879 1 + 162811 a s panTro5.chr22 28915445 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189988 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212837 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s chlSab2.chr19 24758125 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 977986 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8915965 1 - 16357246 A i saiBol1.JH378157 I 25 C 0 s aotNan1.NW_018512389v1 29700 1 - 704494 A i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36337291 1 - 42659167 A i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 127401 36 + 1056298 I e canFam3.chr10 46143805 1402 - 69331447 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e cebCap1.NW_016107750v1 1399488 24 - 1807191 I e calJac3.chrUn_GL286373 2003857 0 - 2117846 C e manLeu1.NW_012102031v1 14038937 0 - 14338769 C e cerAty1.NW_011999588v1 4127977 0 - 4483953 C e macNem1.NW_012012688v1 7168127 0 - 13098629 C e macFas5.chr10 87671160 0 - 96509753 C e rheMac8.chr10 84324793 0 + 92844088 C e nomLeu3.chr7b 106705334 0 - 115148730 C a score=19373.000000 s hg38.chr22_GL383582v2_alt 135880 6 + 162811 aaaaTT s panTro5.chr22 28915446 6 + 37823149 AAAATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189989 6 + 50109623 AAAATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212838 6 + 4464012 AAAATT i gorGor5.CYUI01015375v1 C 0 C 0 s chlSab2.chr19 24758126 6 + 33263144 AAAATT i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 977987 6 + 1946073 AAAATT i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8915966 6 - 16357246 AAAATG i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512389v1 29701 6 - 704494 AAAATG i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36337292 6 - 42659167 AAAATT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46145207 6 - 69331447 aaaaat i canFam3.chr10 I 1402 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 127401 36 + 1056298 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e cebCap1.NW_016107750v1 1399488 24 - 1807191 I e calJac3.chrUn_GL286373 2003857 0 - 2117846 C e manLeu1.NW_012102031v1 14038937 0 - 14338769 C e cerAty1.NW_011999588v1 4127977 0 - 4483953 C e macNem1.NW_012012688v1 7168127 0 - 13098629 C e macFas5.chr10 87671160 0 - 96509753 C e rheMac8.chr10 84324793 0 + 92844088 C e nomLeu3.chr7b 106705334 0 - 115148730 C a score=36151.000000 s hg38.chr22_GL383582v2_alt 135886 10 + 162811 ACAACCCTTG s panTro5.chr22 28915452 10 + 37823149 ACAACCCTTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41189995 10 + 50109623 ACAACCCTTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212844 10 + 4464012 ACAACCCTTG i gorGor5.CYUI01015375v1 C 0 C 0 s chlSab2.chr19 24758132 10 + 33263144 ACAACCCTTA i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 977993 10 + 1946073 ACAACCCTTA i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8915972 10 - 16357246 ACAACCCTTA i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512389v1 29707 10 - 704494 ACAACCCTTA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36337298 10 - 42659167 ATATCCTTTA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46145213 10 - 69331447 tCACCCCTCA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 127437 10 + 1056298 aCACCTCTTA i dasNov3.JH570235 I 36 C 0 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e cebCap1.NW_016107750v1 1399488 24 - 1807191 I e calJac3.chrUn_GL286373 2003857 0 - 2117846 C e manLeu1.NW_012102031v1 14038937 0 - 14338769 C e cerAty1.NW_011999588v1 4127977 0 - 4483953 C e macNem1.NW_012012688v1 7168127 0 - 13098629 C e macFas5.chr10 87671160 0 - 96509753 C e rheMac8.chr10 84324793 0 + 92844088 C e nomLeu3.chr7b 106705334 0 - 115148730 C a score=180910.000000 s hg38.chr22_GL383582v2_alt 135896 21 + 162811 AACTA-TCTCAACAGTATCAGA s panTro5.chr22 28915462 21 + 37823149 AACTA-TCTCAACAGTATCGGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190005 21 + 50109623 AACTA-TCTCAACAGTATCAGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212854 21 + 4464012 AACTA-TCTCAACAGTATCAGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705334 21 - 115148730 CACTA-TCTCAACAGTATCAGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84324793 21 + 92844088 CACTA-TCTCAACAGTATCAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671160 21 - 96509753 CACTA-TCTCAACAGTATCAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168127 21 - 13098629 CACTA-TCTCAACAGTATCAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127977 22 - 4483953 CACTATTCTCAACAGTATCAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758142 21 + 33263144 CACTA-TCTCAACAGTATCAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038937 21 - 14338769 CACTA-TCTCAACAGTATCAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978003 21 + 1946073 CACTA-TCTCAACAGTATCAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003857 22 - 2117846 CACTATTCTCAACATTACCTTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8915982 22 - 16357246 CACTATTCTCAACAGTATCTTA i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512389v1 29717 22 - 704494 CACTATTCTCAACAGTATCTTA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36337308 21 - 42659167 CACCA-GCTCAACAGTATCTTT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46145223 21 - 69331447 CACTA-TTTCAAAAATATCTCT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 127447 15 + 1056298 TACCA-TTTCAAAAAA------ i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e micMur3.chr7 5770421 248 + 108171978 I e cebCap1.NW_016107750v1 1399488 24 - 1807191 I a score=27855.000000 s hg38.chr22_GL383582v2_alt 135917 3 + 162811 GCT-- s panTro5.chr22 28915483 3 + 37823149 GCT-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190026 3 + 50109623 GCT-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212875 3 + 4464012 GCT-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705355 3 - 115148730 GCT-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84324814 3 + 92844088 GCT-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671181 3 - 96509753 GCT-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168148 3 - 13098629 GCT-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4127999 3 - 4483953 GCT-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758163 3 + 33263144 GCT-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038958 3 - 14338769 GCT-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978024 3 + 1946073 GCT-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003879 3 - 2117846 GCT-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916004 2 - 16357246 -CC-- i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512389v1 29739 3 - 704494 GCT-- i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5770669 3 + 108171978 GCT-- i micMur3.chr7 I 248 C 0 s otoGar3.GL873526 36337329 3 - 42659167 GTC-- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46145244 3 - 69331447 GCT-- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 127462 3 + 1056298 --TAT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I e cebCap1.NW_016107750v1 1399488 24 - 1807191 I a score=12907.000000 s hg38.chr22_GL383582v2_alt 135920 1 + 162811 T s panTro5.chr22 28915486 1 + 37823149 T i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190029 1 + 50109623 T i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212878 1 + 4464012 T i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705358 1 - 115148730 T i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84324817 1 + 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671184 1 - 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168151 1 - 13098629 T i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128002 1 - 4483953 T i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758166 1 + 33263144 T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038961 1 - 14338769 T i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978027 1 + 1946073 T i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003882 1 - 2117846 T i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916006 1 - 16357246 T i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399512 1 - 1807191 T i cebCap1.NW_016107750v1 I 24 C 0 s aotNan1.NW_018512389v1 29742 1 - 704494 T i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5770672 1 + 108171978 T i micMur3.chr7 C 0 C 0 s otoGar3.GL873526 36337332 1 - 42659167 C i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46145247 1 - 69331447 C i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 127465 1 + 1056298 T i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5132220 152 - 6317780 I a score=713834.000000 s hg38.chr22_GL383582v2_alt 135921 42 + 162811 TATCTGTTC--CTACTGACAGCAAAGTGCTGCTCTGCCCAAGGG s panTro5.chr22 28915487 42 + 37823149 TATCTGTTC--CTACTGACAGCAAAGTGCTGCTCTGCCCAAGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190030 42 + 50109623 TATCTGTTC--CTACTGACAGCAAAGTGCTGCTCTGCCCAAGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212879 42 + 4464012 TATCTGTTC--CTACTGACAGCAAAGTGCTGCTCTGCCCAAGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705359 42 - 115148730 TATCTGTTC--CCACTGACAGCAAAGTGCTCCTCTGCCCAAGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84324818 42 + 92844088 TATCTGTTC--CCACTGACAGCAAAGTGCTGCTCTGCCCAAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671185 42 - 96509753 TATCTGTTC--CCACTGACAGCAAAGTGCTGCTCTGCCCAAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168152 42 - 13098629 TATCTGTTC--CCACTGACAGCAAAGTGCTGCTCTGCCCAAGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128003 42 - 4483953 TATCTGTTC--CCACTGACAGCAAAGTGCTGCCCTGCCCAAGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758167 42 + 33263144 TATCTGTTC--CCACTGACAGCAAAGTGCTGCTCTGCCCAAGTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14038962 42 - 14338769 TATCTGTTC--CCACTGACAGCAAAGTGCTGCTCTGCCCAAGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978028 42 + 1946073 TATCTGTTC--CCACTGACAGCAAAGTGCTGCTCTGCCCAAGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003883 42 - 2117846 TATCTGTTC--CCACTGACAGCAAACTGCTGCTCTGCCCAAGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916007 42 - 16357246 TATCTGTTC--CCACTGACAGCAAACTGCTGCTCTGCCCAAGAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399513 42 - 1807191 TATCTGTTC--CCACTGACAGCAAACTGCTGCTCTGCCCAAGGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29743 42 - 704494 TATCTGTTC--CCACTGACAGCAAACTGCTGCTCTGCCCAAGGG i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5770673 42 + 108171978 TATCTGTTT--CTACTGAGAGTAAAGTGCTGCTCTGCCCAAGGG i micMur3.chr7 C 0 I 59 s proCoq1.NW_012136747v1 5132372 42 - 6317780 TATCTGTTC--CTACTGAGAGTAAAGTGCTGCTTTGCCCAAGGG i proCoq1.NW_012136747v1 I 152 I 2 s otoGar3.GL873526 36337333 42 - 42659167 TATCTGTTC--CTACTGAGAATAAAGTGCTGTGCTGCCCAAGGG i otoGar3.GL873526 C 0 I 2 s canFam3.chr10 46145248 42 - 69331447 TATTTGCTC--TGACTGACAGCAAAGCACTTCCCTGCCCATGGG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 127466 42 + 1056298 --TTTATTCTGCTGCTGACAGCAAAGTGCTTTCCTGCCCAAGGG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I a score=575459.000000 s hg38.chr22_GL383582v2_alt 135963 47 + 162811 AAAGAAATAGAGGCACAGGGGACCCCACAAG-TCAG----AAGCAGGAGGGA s panTro5.chr22 28915529 47 + 37823149 AAAGAAATAGAGGCACAGGGGACCCCACAAG-TCAG----AAGCAGGAGGGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190072 47 + 50109623 AAAGAAATAGAGGCACAGGGGACCCCACAAG-TCAG----AAGCAGGAGGGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212921 47 + 4464012 AAAGAAATAGAGGCACAGGGGATCCCACAAG-TCAG----AAGCAGGAGGGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705401 47 - 115148730 AAAGAAATAGAGGCACAGGGGACCCCACAAA-TCAG----AAGCAGGAGGGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84324860 47 + 92844088 AAAGAAAGAGAGGCACAGGGGACCCCACAAG-TCAG----AAGCAGGAGGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671227 47 - 96509753 AAAGAAAGAGAGGCACAGGGGACCCCACAAG-TCAG----AAGCAGGAGGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168194 47 - 13098629 AAAGAAATAGAGGCACAGGGGACCCCACAAG-TCAG----AAGCAGGAGGGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128045 47 - 4483953 AAAGAAATAGAGGCACAGGGGACCCCACAAG-TCAG----AAGCAGGAGGGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758209 47 + 33263144 AAAGAAATAGAGGCACAGGGGACCCCACAAG-TCAG----AAGCAGGAGGGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14039004 47 - 14338769 AAAGAAATAGAGGCACAGGGGACCCCACAAG-TCAG----AAGCAGGAGGGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978070 46 + 1946073 AAAGAAATAGAGGCACAGGGGACCCCACAAG-TCAG-----AGCAGGAGGGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003925 49 - 2117846 AAAAAAATAGAGGCAC--GGGATCCCACAAG-TCAGACAGAAGCAGGAGGGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916049 49 - 16357246 AAAAAAATAGAGGCAC--AGGATCCCACAAG-TCAGACAGAAGCAGGAGGGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399555 49 - 1807191 AAAAAAATAGAGGCAC--AGGATCCCACAAG-TCAGACAGAGGCAGGGGGGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29785 49 - 704494 AAAAAAATAGAGGCAC--GGGATCCCACAAG-TCAGACAGAAGCAGGAGGGA i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5132416 48 - 6317780 GAAGAAAGGGAGGCACAGGAAACCCCACAGGCCCAG----AGGCAGGAGGCA i proCoq1.NW_012136747v1 I 2 I 1 s otoGar3.GL873526 36337377 48 - 42659167 GAAAAAAAGGAGGCATAGAAAACCCCAGAAGCCCAG----AGACACATGGAA i otoGar3.GL873526 I 2 I 1 s canFam3.chr10 46145290 47 - 69331447 GTAGAAAGGCAGGCACAAGAGACCCCACAAG-TCCA----GAGCAGGTTGGA i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 127508 47 + 1056298 GAGGAAAGGGAGGCATCAGAGACCCCGCAAG-CCCA----GGGAAAGTCAGA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e micMur3.chr7 5770715 59 + 108171978 I a score=2837482.000000 s hg38.chr22_GL383582v2_alt 136010 215 + 162811 -AGGGAGGAGCCTGCCAGACAGGACCTCTACTTCAGGAAACCTGGTGCCAATGCCACACACAGGGTTGTTGGACACCACAGTGCCCAGG-CAAGTGTGCACAC-AGGGTCACTAGCTC--AAAATTATTTTTTGAGAATCAGGCCTAAAGTCAGCTGAATTCCAACCCACAGTCGGCAGGCCTATTATTAGGCATAATTTCA---AACAGCCAAGAGGCTGCA s panTro5.chr22 28915576 215 + 37823149 -AGGGAGGAGCCTGCCAGACAGGACCTCTACTTCAGGAAACCTGGTGCCAATGCCACACACAGGGTTGTTGGACACCACAGTGCCCAGG-CAAGTGTGCACAC-AGGGTCACTAGCTC--AAAATTATTTTTTGAGAATCAGGCCTAAAGTCAGCTGAATTCCAACCCACAGTGGGCAGGCCTATTATTAGGCATAATTTCA---AACAGCCAAGAGGCTGTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190119 215 + 50109623 -AGGGAGGAGCCTGCCAGACAGGACCTCTACTTCAGGAAACCTGGTGCCAATGCCACACACAGGGTTGTTGGACACCACAGTGCCCAGG-CAAGTGTGCACAC-AGGGTCACTAGCTC--AAAATTATTTTTTGAGAATCAGGCCTAAAGTCAGGTGAATTCCAACCCACAGTGGGCAGGCCTATTATTAGGCATAATTTCA---AACAGCCAAGAGGCTGTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3212968 215 + 4464012 -AGGGAGGAGCTTGCCAGACAGGACCTCTACTTCAGGAAACCTGGTGCCAATGCCACACACAGGGTTGTTGGACACCACAGTGCCCAGG-CAAGTGTGCACAC-AGGGTCACTAGCTC--AAAATTATTTTTTGAGAATCAGGCCTAAAGTCAGCTGAACTCCAACCCACAGTGGGCAGGCCTATTATTAGGCATAATTTCA---AACAGCCAAGAGGCTGTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705448 214 - 115148730 -AGGGAGGAGCTTGCCAGACAGGACCTCTACTTCAGGAAACCTGGTGCCAATGCCACACACAGGGTTGCTGGACACCACAGTGCCCAGG-CAAGTGTGCACAC-AGAATCACTAGCTC--AACATTATTTTTC-AGAATCAGGCCTAAAGTCAGCTGAATTCCATCCTACAGTGGGCAGGCCTATTATTAGGCATAATCTCA---AACAGCCAAGAGGCTGTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84324907 216 + 92844088 -AGGGAGGAGCTTGCCAGACATGACCTCTACTTCAGGAAGCCTGGTGCCAATGCCACACACAGGGTTGTTGGACACCACAGTGCCCAGG-CAAGTGTGCACAC-AGAATCACTAGCTCAAAAAGTTATTTTTC-AGAATCAGGCCTAAAGTCAGCTGAATTCCATCCCACAATGGGCAGGCCTATTATTAGACATAATCTAA---AACAGCCAAGAGGCTGTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671274 216 - 96509753 -AGGGAGGAGCTTGCCAGACATGACCTCTACTTCAGGAAGCCTGGTGCCAATGCCACACACAGGGTTGTTGGACACCACAGTGCCCAGG-CAAGTGTGCACAC-AGAATCACTAGCTCAAAAAGTTACTTTTC-AGAATCAGGCCTAAAGTCAGCTGAATTCCATCCCACAATGGGCAGGCCTATTATTAGACATAATCTAA---AACAGCCAAGAGGCTGTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168241 216 - 13098629 -AGGGAGGAGCTTGCCAGACATGACCTCTACTTCAGGAAGCCTGGTGCCAATGCCACACACAGGGTTGTTGGACACCACAGTGCCCAGG-CAAGTGTGCACAC-AGAATCACTAGCTCAAAAAGTTATTTTTC-AGAATCAGGCCTAAAGTCAGCTGAATTCCATCCCACAATGGGCAGGCCTATTATTAGACATAATCTAA---AACAGCCAAGAGGCTGTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128092 216 - 4483953 -AGGGAGGAGCTTGCCAGACATGACCTCTACTTCAGGAAGCCTGGTGCCAATGCCACACACAGGGTTGTTGGACACCACAGTGCCCAGG-CAACTGTGCACAC-AGAATCACTAGCTCAAAAAGTTATTTTTC-AGAATCAGGCCTAAAGTCAGCTGAATTCCATCCCACAATGGGCAGGCCTATTATTAGACATAATCTAA---AACAGCCAAGACGCTGTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758256 214 + 33263144 -AGGGAGGAGCTTGCCAGACATGACCTGTACTTCAGGAAGCCTGGTGCCAATGCCACACACAGGGTTGTTGGACACCACAGTGCCCAGG-CAAGTGTGCACAC-AGAATCACTAGCTC--AAAGTTATTTTTC-AGAATCAGGCCTAAAGTCAGCTGAATTTCATCCCACAATGGGCAGGCCTATTATTAGACATAATCTAA---AACAGCCAAGAGGCTGTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14039051 216 - 14338769 -AGGGAGGAGCTTGCCAGACATGACCTCTACTTCAGGAAGCCTGGTGCCAATGCCACACACAGGGTTGTTGGACACCACAGTGCCCAGG-CAAGTGTGCACAC-AGAATCACTAGCTCAAAAAGTTATTTTTC-AGAATCAGGCCTAAAGTCAGCTGAATTCCATCCCACAATGGGCAGGCCTATTATTAGACATAATCTAA---AACAGCCAAGACGCTGTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978116 214 + 1946073 -AGGGAGGAGCTTGCCAGACATGACCTCTACTTCAGGAAGCCTGGTGCCAATGCCACACACAGGGTTGTTGGACACCACAGTGCCCAGG-CAAGTGTGCACAC-AGAATCACTAGCTC--AAAGTTATTTTTC-AGAATCAGGCCTAAAGTCAGCTGAATTCCATCCCACAATGGGCAGGCCTATTATTAGACATAATCTAA---AACAGCCAAGAGGCTGTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2003974 198 - 2117846 -AGGGAGGAGACTGCCAGACAGAACCTCACCATTAGGAAACCTGGCGCCAATGCT---------------GGACACCATGGTGCCC-AG-CAAGTGTGCACAC-AAAATCACTGGCTC--CAAGTTATTTTTC-AGAATGAGGCCTAAAAACAGCTGAATTCCATCCCACAGTGGGCAAGTCTATTATTAGACATAATCTCA---AAGAGCCAAGAGGTTGCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916098 199 - 16357246 -AGGGAGGAGACTGCCAGACAGGACCTCACCATTAGGAAACCTGGCACCAATGCC---------------GGACACCATGGTGCCCTGG-CAAGTGTGCACAC-AAAATCACTGGCTC--CAAGTTATTTTTC-AGAATCAGGCCTAAAAACAGCTGAATTCCATCCCACAGTGGGCAAGCCTATTATTAGACATAATCTCA---AAGAGCCAAGAGGTTGCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399604 199 - 1807191 -AGGGAGGAGACTGCCAGACAGGGCCTCACCATTAGGAAACCTGGCACCAATGCT---------------GGACACCATGGTGCCCAGG-TAAGTGTGCACAC-AAAATCACTGGCTC--CAAGTTATTTTTC-AGAATCGGGCCTAAAAACAGCTGAATTCCATCCCACAGTGGGCAAGTCTATTATTAGACATAATCTCA---AAGAGCCAAGAGGCTGCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 29834 199 - 704494 -AGGGAAGAGACTGCCAGACAGGAACTCACCATTAGGAAACCTGGCGCCAATGCC---------------GGACACCATGGTGCCCAGG-CAAGTGTGCACAC-AAAGTCACTGGCTC--CAAGTTCTTTTTC-AGAATCAGGCCTAAAAACAGCTGAATTCCATCCCACAGTGGGCAAGTCTATTATTAGACATAATCTCA---AAGAGCCAAGAGGTTGCA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5770774 213 + 108171978 -AGGGAAGAACTTGCCAGACAGAACCTCTGCTCCAGGAAACCTGGAGCCAACACCATGCA-GAGAATATTGGATGCCAGGGTGCCCAAG-CAAGTGTACATAC-AGTATCATTGGCTC--AGAGCTATTTTTC-AGAATCAGGCTTAAAACCAGCTGAATTCCACCCCAAGACAAGTAGGCCTATTTTTAGACATAATCTCA---AACAGTCAAGACGCTGCA i micMur3.chr7 I 59 I 95 s proCoq1.NW_012136747v1 5132465 211 - 6317780 -AGGGAAGAACCTGCCAGACAGAACTTCTGCTCCAGGAAACCTGGAGCCAACACCACGC---AGAATACTGGATGCCAGGGTGCCCCAG-CAAGTGTACATAC-AGAATCACTGGCTC--AGAGATATTTTTC-AGAATCAGGCCTAAAACCAGCTGAATTCCACCCCACAGAGGGCAAGCCTATTTTTAGACATAATCTCA---AACAGCCAAGATGCTGCA i proCoq1.NW_012136747v1 I 1 C 0 s otoGar3.GL873526 36337426 181 - 42659167 -AGGGAAGAACTTGCCAGACAGAATCTCTGCTCTAGGAAACCTGGATCTAACACCATAC---AGCATGCTGGACACCAGGTTGCCCAAA-CAAGTGTACACAG-AGTTACACT--TTC--AGAGTTATTTCTC-AGAATCAGGCTTAAAGC------AGCTCGACTCCACAGTGAGCAAGCCTATTTCTAG----------------CATTCAA--------- i otoGar3.GL873526 I 1 C 0 s canFam3.chr10 46145338 212 - 69331447 -AGACAGGCGCTTGCCAGGCTGAATCTCTGCTCCAGGAAACCTGGCGCCAATACCAAGCA--TGCACCTCAGACGCTGTGGTGCCCAAG-CAAGTGTACATGCAAAAATAACCAGCTC--TGAGCTATTTTTC-AGAATCAGGCCTAAAAACAGCTGAATTCCACTCCACAGTGGGCAGGTCTATTTTTAGACATAATCTCT---AACAGCCACGAGGTTGT- i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 127555 207 + 1056298 GGAGGAAGAACTTGCCAGGGAGAAG-TGTGCTGCAGAAAACCTGGAGCCAAGACCTGGCACACGCCTC--AGGCACTCTGGTGCCCAAGATGACTGTGCACGT-GCAATAATGGACTC--TGAACTATTTTTC-AGAATTGGGCCTAAAAACAGCTGAATTCCACTCCATAATGGGCAGGTCTATTTTTCGACACTCTCTCAGTCAATGGCCAC--------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I a score=1045665.000000 s hg38.chr22_GL383582v2_alt 136225 98 + 162811 A-GCATCCTATATCTACCACATGCTTCTGTAACTCTGCAAGGAGATGCTATAAATCTGCTCCT-GAGCAGACCAAAGGCACCTGGGCCCTATCCTGG---------------------CCC s panTro5.chr22 28915791 99 + 37823149 AAGCATCCTATATCCACCACATGCTTCTGTAACTCTGCAAGGAGATGCTATAAATCTGCTCCT-GAGCAGACCAAAGGCACCTGGGCCCTATCCTGG---------------------CCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190334 98 + 50109623 A-GCATCCTATATCCACCACATGCTTCTGTAACTCTGCAAGGAGATGCCATAAATCTGCTCCT-GAGCAGACCAAAGGCACCTGGGCCCTATCCTGG---------------------CCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3213183 98 + 4464012 A-GCATCCTATATCCACCACATGCTTCTGTAACTCTGCAAGGAGATGCTATAAATCTGCTTCT-GAGCAGACCAAAGGCACCTGGGCCCTATCCTTG---------------------CCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705662 96 - 115148730 A-GCATCC--TATCCACCACATGCTTCTGTAACTCTGCAAGGAGATGCCATAAATCTGCTCCT-GAGCAGACCAAAGGCACCTGGGCCCTATCCTGG---------------------CCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84325123 96 + 92844088 A-GCATCC--TATCCATCACATGCTTCTATAACTGTGCAAGGAGATGCCATAAATCTGCTCCT-GAGCAGACCAAAGGCACCTGGGCCCTATCCTGG---------------------CCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671490 96 - 96509753 A-GCATCC--TATCCATCACATGCTTCTATAACTGTGCAAGGAGATGCCGTAAATCTGCTCCT-GAGCAGACCAAAGGCACCTGGGCCCTATCCTGG---------------------CCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168457 96 - 13098629 A-GCATCC--TATCCATCACATGCTTCTATAACTGTGCAAGGAGATGCCGTAAATCTGCTCCT-GAGCAGACCAAAGGCGCCTGGGCCCTATCCTGG---------------------CCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128308 96 - 4483953 A-GCATCC--TATCCATCACATGCTTCTATAACTGTGCAAGGAGATGCCGTAAATCTGCTCCT-GAGCAGACCAAAGGCACCTGGGCCCTATCCTGG---------------------CCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758470 96 + 33263144 A-GCATCC--TATCCATCACATGTTTCTATAACTGTACAAGGAGATGCCGTAAATCTGCTCCT-GAGCAGACCAAAGGCACCTGGGCCCTATCCTGG---------------------CCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14039267 96 - 14338769 A-GCATCC--TATCCATCACATGCTTCTGTAACTGTGCAAGGAGATGCCGTAAATCTGCTCCT-GAGCAGACCAAAGGCACCTGGGCCCTATCCTGG---------------------CCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978330 117 + 1946073 A-GCATCC--TATCCATCACATGTTTCTGTAACTCTGCAAGGAGATGCCATAAATCTGCTCCT-GAGCAGACCAAAGGCACCTGGGCCCTATCCTGGCcccactcccactcccccactccc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2004172 95 - 2117846 A-GTATCC--TATCCATCACATACT-CTGCAACTCTGCATGGACATGCCATAAATCTGCTCCT-GAACAGACCAAAGGCAACTGGGCCCTATGGTAA---------------------CCT i calJac3.chrUn_GL286373 C 0 I 2 s saiBol1.JH378157 8916297 95 - 16357246 A-GTAT-C--TATCCATCACATGCTACTGCAACTCTGCATGGAGATGCCATAAATCTGCTCCT-GAACAGACCAAAGACACCTGGGCCGTATGGTAA---------------------CCT i saiBol1.JH378157 C 0 I 2 s cebCap1.NW_016107750v1 1399803 86 - 1807191 A-GTATCC--TATCCATCACATGCTACTGCAACTCTGCATGGAGATGCCATAAATCTGCTCCT-GAATAGACCAAAGGTACCTGGGC-------------------------------CCT i cebCap1.NW_016107750v1 C 0 I 2 s aotNan1.NW_018512389v1 30033 96 - 704494 A-GTATCC--TATCCATCACATGCTACTGCAACTCTGCATGGAGATGCCATAAATCTGCTCCT-GAACAGACCAAAGGCACCTGGGCCCTATGGTAA---------------------CCT i aotNan1.NW_018512389v1 C 0 I 24 s proCoq1.NW_012136747v1 5132676 88 - 6317780 --GCATCC--AATCAACTGAATGCTTCTCTAACTCTGCATGGA-AGGCCATAAATCTGCTCCTGGACCAGACCAAAGGAGTCTGGGCCCCACT---------------------------- i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36337607 78 - 42659167 ------------TTGATGGCATGCTTCTGTAA--CTGCATGGA-GTGCCATAAATTTGCTCCTGGATCAGACCAAAGGAGTCTGGGCCCCATT---------------------------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46145550 82 - 69331447 A-GCATCC--TATCAACTGTATGCTTCTGTAAC--TGCACAGAAACGGCATAAATTTGCTCCT-GGCTAGGCCAAAAGAGGCTGGGTC--------------------------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 127762 84 + 1056298 A-GAATCC--TATCAACTGCATATTTCTGTAACTC--CACTGAAGTGCCATTAATTTGTTCCA-GGACAG-------GAGCCACAGCCCCATCCTGG------------------------ i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e micMur3.chr7 5770987 95 + 108171978 I a score=109656.000000 s hg38.chr22_GL383582v2_alt 136323 14 + 162811 CACCCCCACTCCAT s panTro5.chr22 28915890 14 + 37823149 CACCCCCACTCCAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190432 14 + 50109623 CACCCCCACTCCAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3213281 14 + 4464012 CACCCCCACTCCAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705758 14 - 115148730 CACCCCTACTCCAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84325219 14 + 92844088 CACCCCCATTCCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671586 14 - 96509753 CACCCCCATTCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168553 14 - 13098629 CACCCCCATTCCAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128404 14 - 4483953 CACCCCCATTCCAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758566 14 + 33263144 CACCCCCACTCCAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14039363 14 - 14338769 CACCCCCACTCCAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978447 14 + 1946073 caccctcactccAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2004269 14 - 2117846 GGTAACCACTCCAT i calJac3.chrUn_GL286373 I 2 C 0 s saiBol1.JH378157 8916394 14 - 16357246 GGTAACCACTCCAT i saiBol1.JH378157 I 2 C 0 s cebCap1.NW_016107750v1 1399891 14 - 1807191 GGTAACCACTCCAT i cebCap1.NW_016107750v1 I 2 C 0 s proCoq1.NW_012136747v1 5132764 9 - 6317780 -----CCACTTGAT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36337685 10 - 42659167 ----CCCACTCAAT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46145632 14 - 69331447 CATTCCCACTTGAT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 127846 10 + 1056298 --CCCCCAGACC-- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 30129 24 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e micMur3.chr7 5770987 95 + 108171978 I a score=100708.000000 s hg38.chr22_GL383582v2_alt 136337 10 + 162811 GGCTATCTGT s panTro5.chr22 28915904 10 + 37823149 GGCTATCTGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190446 10 + 50109623 GGCTATCTGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3213295 10 + 4464012 GGCTATCTGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705772 10 - 115148730 GGCTATCTGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84325233 10 + 92844088 GGCTACCTGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671600 10 - 96509753 GGCTACCTGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168567 10 - 13098629 GGCTACCTGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128418 10 - 4483953 GGCTACCTGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758580 10 + 33263144 GGCTACCTGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14039377 10 - 14338769 GGCTACCTGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978461 10 + 1946073 GGCTACCTGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2004283 8 - 2117846 GGTTACCT-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916408 8 - 16357246 GGTTACCT-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399905 8 - 1807191 GGTTATCT-- i cebCap1.NW_016107750v1 C 0 C 0 s micMur3.chr7 5771082 10 + 108171978 GGCTACCTGT i micMur3.chr7 I 95 C 0 s proCoq1.NW_012136747v1 5132773 10 - 6317780 GGCTACCTGT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36337695 10 - 42659167 GACTACCAGT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46145646 10 - 69331447 AGCTACCTGT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 127856 4 + 1056298 --CTGC---- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 30129 24 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I a score=1497952.000000 s hg38.chr22_GL383582v2_alt 136347 98 + 162811 CTTATTTTCAC-AGGGGCATCCCAAGATCACTTCAGATGACCACATATG-----TG---AGCAGGATGGCCAAACAGTTCC---CAAAAAGGGGGCAGGAGAAGGGTGGG s panTro5.chr22 28915914 98 + 37823149 CTTATTTTCAC-AGGGGCATCCCAAGATCACTTCAGATGACCACATATG-----TG---AGCAGGATGGCCAAACAGTTCC---CAAAAAGGGGGCAGGAGAAGGGTGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190456 98 + 50109623 CTTATTTTCAC-AGGGGCATCCCAAGATCACTTCAGATGACCACATATG-----TG---AGCAGGATGGCCAAACAGTTCC---CAAAAAGGGGGCAGGAGAAGGGTGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3213305 98 + 4464012 CTTATTTTCAC-AGGGGCATCCCAAGATCACTTCAGATGACCACATATG-----TG---AGCAGGATGGCCAAACAGTTCC---CAAAAAGGGGGCAGGAGAAGGGTGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705782 98 - 115148730 CTTATTTTCAC-AGGGGCATCCCAAGATCACTTCAGATGACCACATATG-----TG---AGCAGGATGGCCAAATAGTTCC---CAAAACGGGAGCAGGAGGAGGGTGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84325243 101 + 92844088 CTTATTTTCAC-AGGGGCATCCCAAGATCACTTCAGATTACCACATATG-----TG---AGCAGGATGGCCAAACAGCTCCCCGCAGAAAGGAGGCAGAAGAAGGGTGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671610 98 - 96509753 CTTATTTTCAC-AGGGGCATCCCAAGATCACTTCAGATTACCACATATG-----TG---AGCAGGATGGCCAAACAGCTCCCCGCAGAAAGGAGGC---AGAAGGGTGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168577 101 - 13098629 CTTATTTTCAC-AGGGGCATCCCAAGATCACTTCAGATTACCACATATG-----TG---AGCAGGATGGCCAAACAGCTCCCCGCAGAAAGGAGGCAGAAGAAGGGTGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128428 101 - 4483953 CTTATTTTCAC-AGGGGCATCCCAAGATCACTTCAGATTACCACATATG-----TG---AGCAGGATGGCCAAACAGCTCCCCGCAGAAAGGAGGCAGAAGAAGGGTGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758590 101 + 33263144 CTTATTTTCAC-AGGGGCATCCCAAGATCACTTCAGATTACCACATATG-----TG---AGCAGGATGGCCAAACAGCTCCCCGCAGAAAGGAGGCAGAAGAAGGGTGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14039387 101 - 14338769 CTTATTTTCAC-AGGGGCATCCCAAGATCACTTCAGATTACCACATATG-----TG---AGCAGGATGGCCAAACAGCTCCCCGCAGAAAGGAGGCAGAAGAAGGGTGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978471 101 + 1946073 CTTATTTTCAC-AGGGGCATCCCAAGATCACTTCAGATTACCACATATG-----TG---AGCAGGATGGCCAAACAGCTCCCTGCAGAAAGGAGGCAGAAGAAGGGTGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2004291 98 - 2117846 CTTCCTTTCGC-AGGGGCATCCCAAGATCACTTCAGATGACCACATATG-----TG---AGTAAGATGGCCAAACAGTTCC---CAGAAAGGAGGCAGGAGAAGGGTGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916416 98 - 16357246 CTTCCTTTCAC-AGGGGCATCCCAAGATCACTTCAGATAACCACATATG-----TG---AGTTGGATGGCCAAACAGTTCC---CAGAAAGGAGGCAGAAGAAGGGTGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1399913 98 - 1807191 CTTCCTTTCAC-AGGGGCATCCCAAGATCACTTCAGATGACCACATATG-----TG---AGTAGGATGGCCAAACAGTTCC---CAGAAAGAAGGCAGAAGAAGGGTAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 30153 97 - 704494 CTTCCTTTCAC-AGGGGCATCCCAAG-TCACTTCAGATGACCACATATG-----TG---AGCAGGATGGCCAAACAGTTCC---CAGAAAGGAGGCAGGAGAAGGGTGGG i aotNan1.NW_018512389v1 I 24 C 0 s micMur3.chr7 5771092 98 + 108171978 CTTATATTCAT-ATGGACATCCCAAGATCACTTCAGATGACCTCATCTG-----TG---ATCAAGAAGGCCACATAGTTTC---CAAAAAGTGGGCAGGAGAAGGGTGGG i micMur3.chr7 C 0 I 153 s proCoq1.NW_012136747v1 5132783 98 - 6317780 CTTATATTCAC-AGGGACATCCCAAGATCACTTCAGATGACCTCATCTG-----TG---ATCAGGAAGGCCAAATAGTTTC---CGAAAAGTGGGCAGGAGAAGAGTGGG i proCoq1.NW_012136747v1 C 0 I 44 s otoGar3.GL873526 36337705 95 - 42659167 CTTATAGTCAC-AGGGACATCCCAACATCACTTCAGATGACCTCATCTG-----TG---AGC---AAGGCCAAACAGTTTC---CAAAAGGGGGTCAGGAGAAGGGTGGG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46145656 100 - 69331447 --CATATTCATAAGGGGCGTCCCAAGATCAATTTAGATGACCACATCTGATCTCTG---GGCAAGATGGCCA-ACAGTTCT---TGGAAAAGGGGCTGGAGCAGGGTGA- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 127860 101 + 1056298 CCTAGATTCAC-AGGGGTATCCCAACATCACCCTGGATGACCACATCTG-----TGAGAAGCAGGATGGCCAAACAGTTCT---CAGAAAGGGAGCAGGAGAAGTATAGG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I a score=319050.000000 s hg38.chr22_GL383582v2_alt 136445 41 + 162811 AGCAG-GACATCTCTGGGGCTAGCTAGAGGCT-CCTGTGGGAT s panTro5.chr22 28916012 40 + 37823149 AGCAG-GACATCTCTGGGGCTAGCTAGAG-CT-CCTGTGGGAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190554 40 + 50109623 AGCAG-GACATCTCTGGGGCTAGCTAGAG-CT-CCTGTGGGAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3213403 40 + 4464012 AGCAG-GACATCTCTGGGGCTAGCTAGAG-CT-CCTGTGGGAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705880 40 - 115148730 AGCAG-GGCATCTCTGGGGCTACTTAGAG-CT-CCTGTGGAAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84325344 36 + 92844088 AGCAGTGGCATCTCTGGG-----CTAGAG-TT-CCTGTGGGAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671708 36 - 96509753 AGCAGTGGCATCTCTGGG-----CTAGAG-TT-CCTGTGGGAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168678 36 - 13098629 AGCAGTGGCATCTCTGGG-----CTAGAG-TT-CCTGTGGGAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128529 36 - 4483953 AGCAGTGGCATCTCTGGG-----CTAGAG-TT-CCTGTGGGAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758691 36 + 33263144 AGCAGTGGCATCTCTGGG-----CTAGAG-TT-CCTGTGGGAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14039488 36 - 14338769 AGCAGTGGCATCTCTGGG-----CTAGAG-TT-CCTGTGGGAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978572 36 + 1946073 AGCAGTGGCATCTCTGGG-----CTAGAG-TT-CCTGCGGAAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2004389 38 - 2117846 AGCAGTGGCACCTCTGGGGTTAGCTAGAA-----CTATGGAAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916514 41 - 16357246 AACAGTGGCACCTCTGGGGTTAGCTAGAG-CT-CCTGTGGAAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1400011 41 - 1807191 AGCAGTGGCACCTCTGGGGTCAGCTAGAG-CT-CCTGTGGAAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 30250 41 - 704494 AGCAGTGGCACCTCTGGGGTTAGCTAGAG-GT-CCTGTGGAAT i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36337800 37 - 42659167 GCCAGTGGCATCTCTGGG-GTAGCTGGGG-----CTGTGACAG i otoGar3.GL873526 C 0 I 2 s canFam3.chr10 46145756 27 - 69331447 ---------------AGGGCTAGCTGGGG-TTCCCTGCAGGTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 127961 39 + 1056298 ACCAGTGGTGTCTTGGGG--CAGCTGAGG-CT-CCTGGGATTT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5132881 44 - 6317780 I e micMur3.chr7 5771190 153 + 108171978 I a score=1269943.000000 s hg38.chr22_GL383582v2_alt 136486 107 + 162811 TTTCTTAAATGCTGAGCGTAGGGGCTTCT-GAGATGTCATTGAA--TATATT----------TTTTC-ATTCAAAGGTTGTATTAATACATAATTTCTAAACCTTCAGAGGCAAAAG-------GG----AG s panTro5.chr22 28916052 107 + 37823149 TTTCTTAAATGCTGAGCGTAGGGGCTTCT-GAGATGTCATTGAA--TATATT----------TTTTC-ATTTAAAGGTTGTATTAATACATAATTTCTAAACCTTCAGAGGCAAAAG-------GG----AA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190594 107 + 50109623 TTTCTTAAATGCTGAGCGTAGGGGCTTCT-GAGATGTCATTGAA--TATATT----------TTTTC-ATTTAAAGGTTGTATTAATACATAATTTCTAAACCTTCAGAGGCAAAAG-------GG----AA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3213443 107 + 4464012 TTTCTTAAATGCTGAGCATAGGGGCTTCT-GAGATGTCATTGAA--TATATT----------TTTTC-ATTTAAAGGTTGTATTAATACATAATTTCTAAACCTTCGGAGGCAAAAG-------GG----AA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106705920 107 - 115148730 TTTCTTAAATGCTGAGTGCAGGGGCTTCT-GAGATGTCATTGAA--TATATT----------TTTTC-ATTTAAAGGTTGTATTAATACATAATTTCTAAACCTTCAGAGGCAAAAG-------GG----AA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84325380 107 + 92844088 TTTCTTAAATGCTGAGCACAGGGGCTCCT-GAGATGTCACTGAA--TTTATT----------CTTTC-ATTTAAAGGTTATATTAATACATAATTTCTAAACCTTCAGAGGCAAAAG-------GG----AA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671744 107 - 96509753 TTTCTTAAATGCTGAGCACAGGGGCTCCT-GAGATGTCACTGAA--TTTATT----------CTTTC-ATTTAAAGGTTGTATTAATACATAATTTCTAAACCTTCAGGGGCAAAAG-------GG----AA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168714 107 - 13098629 TTTCTTAAATGCTGAGCACAGGGGCTTCT-GAGATGTCACTGAA--TTTATT----------CTTTC-ATTTAAAGGTTGTATTAATACATAATTTCTAAACCTTCAGAGGCAAAAG-------GG----AA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128565 107 - 4483953 TTTCTTAAATGCTGAGCACAGGGGCTTCT-GAGATGTCACTGAA--TTTATT----------CTTTC-ATTTAAAGGTTGTATTAATACATAATTTCTAAACCTTCAGAGGCAAAAG-------GG----AA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758727 107 + 33263144 TTTCTTAAATGCTGAGCACAGGGGCTTCT-GAGATGTCACTGAA--TTTATT----------CTTTC-ATTTAAAGGTTGTATTAATACCTAATTTCTAAACCTTCAGAGGCAAAAG-------GG----AA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14039524 111 - 14338769 TTTCTTAAATGCTGAGCACAGGGGCTTCT-GAGATGTCACTGAA--TTTATT----------CTTTC-ATTTAAAGGTTGTATTAATACATAATTTCTAAACCTTCAGAGGCAAAAG-------GGAAGTAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978608 107 + 1946073 TTTCTTAAATGCTGAGCACAGGGGCTTCT-GAGATGTCACTGAA--TTTATT----------TTTTC-ATTTAAAGGTTGTATTAATACATAATTTCTAAACCTTCAGAGGCAAAAG-------GG----AA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2004427 106 - 2117846 TTTCTATAATGTTGAACCTAGGGGCTTCT-GAGATGTCACTGAA--TATATT----------TTTTT-ATTTAAC-ATTGTATGAATGCATAATTTCTAAACCTTCAGAGGCAAAAG-------GG----AA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916555 107 - 16357246 TTTCTTAAATGCTGAGCCTAGCGGCCTCT-GAGATGTCATTGAA--TGTATT----------TTTTTAATTTAAC-ATTGTATAAATACATGATTTCTAAACCTTCTGAGGCAAAAG-------GG----AA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1400052 106 - 1807191 TTTCTTAAATGCTGAGCCTAGGGGCTTCT-GAGATGTCACTGAA--TGTATT----------TTTTT-ATTTAAC-ATTGTATGAATACATAATTTCTAAACCTTCAGAGGCAAAAG-------GG----AA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 30291 106 - 704494 TTTCTTAAATGCTGAGCCTAGGGGCTTCT-GAGATGTCAGTGAA--TATATT----------TTTTT-ATTTAAC-ATCGTATGAATACATAATTTCTAAACCTTCGGAGGCAAAAG-------GG----AA i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5132925 113 - 6317780 TTTCTTAACTATGGAGCTTAAGGGCTTTT-GAGATGTCATTGAA--TATTTT----------TTCTC-ACTTAAAGGGTGTATGAATACATAATTTCTAAACCTTAA-AGACAAAAGGATCACAGA----AA i proCoq1.NW_012136747v1 I 44 C 0 s otoGar3.GL873526 36337839 96 - 42659167 TTTCTTAACT-----GCT---GCACCTTT-GGGATGTCATGGAA--TATTAT----------TTCTT-ACCCAAAGCA---------ACATAATTTCTAAACTTTCA-AGACAAAAGAATCACAGG----AA i otoGar3.GL873526 I 2 C 0 s canFam3.chr10 46145783 123 - 69331447 TTTCCTAACTGTTGAGCCTGAAGGCTTTTAAAGATGTTATTGCA--TCCCCCC--CACCCCATCCCC-ATTTAAAAGTTGTATGAGTACATAATTTCTAAATCTTCCCAGAGAAAAGGATCACAGA----AA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 128000 117 + 1056298 TTCCCTA---------TCTAAGGGATTTT-GAGATGTCAAAAAAACGGTATTCCTCATTTAATTCTC-ATTTAAAGGTTGTCTGAGTAAGTAATTTCTAAATCTTCACAGGCAGAAGGATCAGAGA----AA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e micMur3.chr7 5771190 153 + 108171978 I a score=462066.000000 s hg38.chr22_GL383582v2_alt 136593 32 + 162811 GTAATTAGTGTTGCCACTT-ATAGGC-TAAAAGG s panTro5.chr22 28916159 32 + 37823149 GTAATTAGTGTTGCCACTT-ATAGGC-TAAAAGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190701 32 + 50109623 GTAATTAGTGTTGCCACTT-ATAGGC-TAAAAGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3213550 32 + 4464012 GTAATTAGTGTTGCCACTT-ATAGGC-TAAAAGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106706027 32 - 115148730 GTAATCAGTGTTGCCACTT-ACAGGC-TAAAAGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84325487 32 + 92844088 GTAATCAGTGTTGCCACTT-ATAGCC-TAAATGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671851 32 - 96509753 GTAATCAGTGTTGCCACTT-ATAGCC-TAAATGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168821 32 - 13098629 GTAATCAGTGTTGCCACTT-ATAGCC-TAAATGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128672 32 - 4483953 GTAATCAGTGTTGCCACTT-AGAGCC-TAAATGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758834 32 + 33263144 GTAATCAGTGTTGCCACTT-ATAGCC-TAAAAGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14039635 32 - 14338769 GTAATCAGTGTTGCCACTT-ATAGCC-TAAATGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978715 32 + 1946073 GTAATCAGTGTTGCCACTT-ATAGCC-TAAAAGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2004533 32 - 2117846 GTAATCAGTCTTGCCATTT-ACAGGC-TAAAAGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916662 32 - 16357246 GTAATCAGTGTTGCCACTT-ACAGGC-TAAAAGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1400158 32 - 1807191 GTAATCAGTGTTGCCACTT-ACAGGC-TAAAAGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 30397 32 - 704494 GTAATCAGTGTTGCGACTT-ACAGGC-TAAAAGG i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5771343 32 + 108171978 GTAATTAGTGCTGCCAATT-ATAGGC-AAGAAGG i micMur3.chr7 I 153 C 0 s proCoq1.NW_012136747v1 5133038 32 - 6317780 GTAATTAGTGTTGCCACTT-ATAGGC-AAAAAGG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36337935 34 - 42659167 GTAATTAGTGTTGCTACTTAAGAGGCAAAAAAGG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46145906 31 - 69331447 GCAATTAGTGTTGCTATTT-ACAGGA-AAAAAG- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 128117 32 + 1056298 TTAATTAGTGTTGCTTCTT-TTAGTT-CAAGAAG i dasNov3.JH570235 C 0 I 6679 e mm10.chr15 82862696 10835 + 104043685 I a score=216779.000000 s hg38.chr22_GL383582v2_alt 136625 16 + 162811 ATGTTCCATTTTATAA s panTro5.chr22 28916191 16 + 37823149 ATGTTCCATTTTATAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190733 16 + 50109623 ATGTTCCATTTTATAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3213582 16 + 4464012 ATGTTCCATTTTATAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106706059 16 - 115148730 ATGTTCCATTTTATAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84325519 16 + 92844088 ATGTTCCATTTTATCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671883 16 - 96509753 ATGTTCCATTTTATCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168853 16 - 13098629 ATGTTCCATTTTATCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128704 16 - 4483953 ATGTTCCATTTTATCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758866 16 + 33263144 ATGTTCCATTTTATCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14039667 16 - 14338769 ATGTTCCATTTTATCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978747 16 + 1946073 ATGCTCTATTTTATCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2004565 16 - 2117846 ATGTTTCATTTTATAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916694 16 - 16357246 ATGTTTCATTTTATAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1400190 16 - 1807191 ATGTTTCATTTTATAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 30429 16 - 704494 ATGTTTCATTttataa i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5771375 15 + 108171978 ATGTT-CATTTTATAA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5133070 15 - 6317780 GTGTT-CATTTTATAA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36337969 15 - 42659167 GTGTT-CATTTTATAA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46145937 15 - 69331447 -TGTTTCATTTTATAA i canFam3.chr10 C 0 I 3549 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I a score=307408.000000 s hg38.chr22_GL383582v2_alt 136641 21 + 162811 TTCATTCaaatataattttga s panTro5.chr22 28916207 21 + 37823149 TTCATTCAAATATAATTTTGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190749 21 + 50109623 TTCATTCAAATATAATTTTGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3213598 21 + 4464012 TTCATTCAAATATAATTTTGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106706075 21 - 115148730 TTCATTCAAATATAATTTTGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84325535 21 + 92844088 TTCATTCAAATACAATTCTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671899 21 - 96509753 TTCattcaaatacaattctga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168869 21 - 13098629 TTCATTCAAATACAATTCTGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128720 21 - 4483953 TTCATTCAAATACAATTCTGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758882 21 + 33263144 TTCATTCAAATACAATTCTGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14039683 21 - 14338769 TTCATTCAAATACAATTCTGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978763 21 + 1946073 TTCATTCAAATACAATTCTGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2004581 21 - 2117846 TTCATTCAAATATAATTCTGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916710 21 - 16357246 TTCATTCAAATATAATTCTGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1400206 21 - 1807191 GTCattcaaatataattctga i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 30445 21 - 704494 ttcattcaaatataattctga i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5771390 21 + 108171978 TTCATTCAAATATAATTTTGA i micMur3.chr7 C 0 I 4685 s proCoq1.NW_012136747v1 5133085 21 - 6317780 TTCATTCAAATATAATTTTGA i proCoq1.NW_012136747v1 C 0 I 3954 s otoGar3.GL873526 36337984 21 - 42659167 TTCATTCAAATATAATTTTGA i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e canFam3.chr10 46145952 3549 - 69331447 I a score=815014.000000 s hg38.chr22_GL383582v2_alt 136662 87 + 162811 ggccgggcctggtggctcaagcctgtaatcccagcacttcggaaggctgaggcaggcagatcacacctgaggtcagaagttcaagac s panTro5.chr22 28916228 87 + 37823149 ggccgggcctggtggctcaagcctgtaatcccagcacttcggaaggctgaggcaggcagatcacacctgaggtcagaagttcaagac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190770 87 + 50109623 ggccgggcctggtggctcaagcctgtaatcccagcacttcggaaggctgaggcaggcagatcacacctgaggtcagaagttcaagac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3213619 87 + 4464012 ggccgggcctggtggctcaagcctgtaatcccagcacttcggaaggctgaggcaggcagatcacacctgaggtcagaagttcaagac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106706096 85 - 115148730 ggccaggcctggtggctcaagcctgtaatcccagcactttggaaggctgaggcaggcagat--cacctgaggtcaggagttcaagac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84325556 85 + 92844088 ggccaggtctggtggctcacgtctgtaatcccagcactttggaaggctgaggcaggcagat--cacctgaggtcaggagttcaagac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87671920 85 - 96509753 ggccaggtctggtggctcacgtctgtaatcccagcactttggaaggctgaggcaggcagat--cacctgaggtcaggagttcaagac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168890 85 - 13098629 ggccaggtctggtggctcacgtctgtaatcccagcactttggaaggctgaggcaggcagat--cacctgaggtcaggagttcaagac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128741 85 - 4483953 ggccaggtctggtggctcacgtctgtaatcccagcactttggaaggctgaggcaggcagat--cacctgaggtcaggagttcaagac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758903 85 + 33263144 ggccaggtctggtggctcacgtctgtaatcccagcactttggaaggctgaggcaggcagat--cacctgaggtcaggagttcaagac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14039704 85 - 14338769 ggccaggtctggtggctcacgtctgtaatcccagcactttggaaggctgaggcaggcagat--cacctgaggtcaggagttcaagac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978784 85 + 1946073 ggccgggtctggtggctcacgtctgtaatcccagcactttggaaggctgaggcaggcagat--cacctgaggtcaggagttcaagac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2004602 85 - 2117846 ggccgggtgtggtgtctcacacctgtaatcccagcactttgggaggccaaggcaggtagat--cacctgagatcaagaattcaagac i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916731 85 - 16357246 ggccgggcatggtgtctcacgcctgtaatcccagcactttgggaggacaaggcaggcagat--cacctgaggtcaggaattcaagac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1400227 85 - 1807191 ggccgggcgtggtgtctcactcctgtaatcccagcacttagggaggacaaggcaggcagat--cacctgaggtcaggaattcaagac i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 30466 85 - 704494 ggccaggtgtggtgtctcatgcctgtaatcccagcactttgggagggcaaggcaggcagat--cacctgaggtcaggaattcaagac i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36338005 15 - 42659167 ----------------------------------------------------------------------ATTCA--AATTCAAGAC i otoGar3.GL873526 C 0 I 30 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e canFam3.chr10 46145952 3549 - 69331447 I e proCoq1.NW_012136747v1 5133106 3954 - 6317780 I e micMur3.chr7 5771411 4685 + 108171978 I a score=2560683.000000 s hg38.chr22_GL383582v2_alt 136749 280 + 162811 cagcctggccaacatggtgaaatgctgtctctactaaaaatacaaaaactggccacatacggtggcggaaacctataatcccagctactcaggaggctgtggcaggagaatcgcttgaacacaggaggtggaggttgcagtgagccaagatcacgccactgaactcca-tccagcgtgggtgacagagtgagattctgtctcttaaaaagaaataataataaaacaaacaaatacaattctgaattaaaattcaaaagatatcaatgaccaatccaaagca s panTro5.chr22 28916315 280 + 37823149 cagcctggccaacatggtgaaatgctgtctctactaaaaatacaaaaactggccacatacggtggcggaaacctgtaatcccagctactcaggaggctgtggcaggagaatcgcttgaacacaggaggtggaggttgcagtgagccaagatcacgccactgaactcca-tccagcctgggtgacagagtgagattctgtctcttaaaaagaaataataataaaacaaacaaaTACAATTCTGAATTAAAATTCAAAAGATATCAATGACCAAACCAAAGTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41190857 280 + 50109623 cagcctggccaacatggtgaaatgctgtctctactaaaaatacaaaaactggccatatacggtggcggaaacctgtaatcccagctactcaggaggctgtggcaggagaatcgcttgaacacaggaggtggaggttgcagtgagccaagatcacgccactgaactcca-tccagcctgggtgacagagtgagattctgtctcttaaaaagaaataataataaaacaaacaaaTACAATTCTGAATTAAAATTCAAAAGATATCAATGACCAATCCAAAGTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3213706 280 + 4464012 cagcctggccaacaaggtgaaatgctgtctctactaaaaatacaaaaactagccacatacggtggcggaaacctgtaatcccagctactcaggaggctgtggcaggagaatcgcttgaacacaggaggtggaggttgcagtgagccaagatcacgcctctgaactcca-tccagcctgggtgacagagtgagattctgtctcttaaaaagaaataataataaaacaaacaaaTATAATTCTGAATTAAAATTCAAAAGATATCAATGACCAATCCAAAGTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106706181 281 - 115148730 cagcctggccaacatggtgaaatgctgtctctactaaaaatacaaaaactagccacgtgtggtggcggaaacctgtaatcccagctacttaggaggctgtggcaggagaatcacttgaacacaggaggtggaggctgcagtgagccaagatcacgccactgaactccattccagcctgggtgacagagtgagattctgtctcttaaaaagaaataataataaaacaaacaaaTATAATTCTGAATTAAAATTCAAAagatatcaatgaccaatccaaagta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84325641 265 + 92844088 cagcctggccaacatgatgaaatgctgtctctactaaaaatacaaaaactagccacgtgtagtggcagacacctgtaatcccagctactcaggaggctgtggcaggagaatcacttgaacacaggaggtggaagttgcattaagccaagatcacgccactgaa----a-tccagcctgggtgacagagtgagactctgtctcttaaaaag----aata-------aaacaaaTATAATTCTGAATTAAAATTCAAAAGATATCAATGACCAATCCAAAGTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87672005 265 - 96509753 cagcctggccaacatgatgaaatgctgtctctactaaaaatacaaaaactagccacgtgtagtggcggacacctgtaatcccagctactcaggaggctgtggcaggagaatcacttgaacacaggaggtggaagttgcattaagccaagatcacgccactgaa----a-tccagcctgggtgacagagtgagactctgtctcttaaaaag----aata-------aaacaaatataattctgaattaaaattcaaaAGATATCAATGACCAATCCAAAGTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7168975 265 - 13098629 cagcctggccaacatgatgaaatgctgtctctactaaaaatacaaaaactagccacgtgtagtggcggacacctgtaatcccagctactcaggaggctgtggcaggagaatcacttgaacacaggaggtggaagttgcattaagccaagatcacgccactgaa----a-tccagcctgggtgacagagtgagactctgtctcttaaaaag----aata-------aaacaaaCATAATTCTGAATTAAAATTCAAAAGATATCAATGACCAATCCAAAGTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4128826 263 - 4483953 cagcctggccaacatgatgaaatgctgtctctactaaaaatacaaaaactagccacgtgtagtggcggacacctgtaatcccagctactcaggaggctgtggcaggagaatcacttgaacacaggaggtggaagttgcattgagccaagatcacgccactgaa----a-tccagcgtgggtgacagagtgagactctgtctcttaaaaag----aata-------aaacaaaTATAATTCTGAATTAAAATTCAAA--ATATCAATGACCAATCCAAAGTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24758988 269 + 33263144 ccgcctggccaacatgatgaaatgctgtctctactaaaaatacaaaaactagccacgtgtagtggcggacacctgtaatcccagctactcaggaggctgtggcaggagaatcacttgaacacaggaggtggaagtcgcactgagccaagatcacactactgaa----a-tccagcctgggtgacagagtgagactctgtctcttaaaaagaaataata-------aaacaaaTATAATTCTGAATTAAAATTCAAAAGATATCAATGACCAATCCAAAGTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14039789 263 - 14338769 cagcctggccaacatgatgaaatgctgtctctactaaaaatacaaaaactagccacgtgtagtggtggacacctgtaatcccagctactcaggaggctgtggcaggagaatcacttgaacacaggaggtggaagttgcattgagccaagatcacgccactgaa----a-tccagcctgggtgacagagtgagactctgtctcttaaaaag----aata-------aaacaaaTATAATTCTGAATTAAAATTCAAA--ATATCAATGACCAATCCAAAGTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 978869 269 + 1946073 cagcctggtcgacgtgatgaaatgcggtctctactaaaaatacaaaaactagccacgtgtagtggcagacacctgtaattccagctactcaggaggctgtggcaggagaatcacttgaacacaggaggtggaagttgcattgagccaagatcacaccactgaa----a-tccagcctgggtgacagagtgagactatgtctcttaaaaataaataata-------aaaCATATATAATTCTGAATTAAAATTCAAAAGATATCAATGACCAATCCAAAGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2004687 269 - 2117846 cagcctggccaacatggtgaaacgctgtttctactaaaaatacagaaattagccaggcatggtggcggacacctgtagtcccagctactcaggaggctatggcaggagaatcacttgaacctgtgaggtggaggttgcagtgagacaagaccacactaccaaa----c-tccagcctgggtgacagagtgagactctgtctctaaaaaagaaataata-------aaacaaaTATAATTCTGAATTAAAATTCAAAAGATATTAATGACCAACCCAAAGTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8916816 262 - 16357246 cagcctggc---catggtgaaacgctgtcgctactaaaaatacagaaattagccaggcatggtggcagacacctgtaatcccagctactcaggaggctatggcaggagaatcacttgaacctgtgaggtggaggttgcattgagtcaagaccacaacactgaa----c-tccagcctgggtgacagagtgagactctgtctctaaaaaagaaataata-----------aaaTATAATTCTGAATTAAAATTCAAAAGATGTCAACGACCAATCCAAAGTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1400312 263 - 1807191 cagcctggccaaaatggtgaaacgctgtctctactaaaaatacagaaattagccaggcatggtggcagacacctgtaatcccagctactcaggaggctgtggcaggagaatcacttgaacctgtgaggtggaggttgcagtgagtcaagaccacaccaccaaa----c-tccagcctgggtgacagagtgaga------ctttaaaaaagaaataata-------aaacaaatataattctgaattaaaattcaaaAGACATCAATGACCAATCCAAAGTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 30551 267 - 704494 cagcctggccaacatggtgaaacactgt--ctactaaaaattcagaaattagccaggcatggtggcagacacctgtaatcccagctactcagaaggctatggcaggagaatcacttgaacctgtgaggtggaggttgcagtgagtcaagaccacaccactgaa----c-tccagcctggatgacagagtgagactctgtctctacaaaagaaataata-------aaacaaatataattctgaattaaaattcaaaAGATATCAATGACCAATCCAAAGTA i aotNan1.NW_018512389v1 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e canFam3.chr10 46145952 3549 - 69331447 I e otoGar3.GL873526 36338020 30 - 42659167 I e proCoq1.NW_012136747v1 5133106 3954 - 6317780 I e micMur3.chr7 5771411 4685 + 108171978 I a score=2018631.000000 s hg38.chr22_GL383582v2_alt 137029 205 + 162811 gaagtgggcaaaagctat---atgaaaattagagacttcactgaacaacccaaaaaagctcaaaacaaaaggaaagaaacaaactagcagaacaaatggta----tagctagataaaaagggctagtattgtaaagacgttaagtctccacatattagtttataaaattctaatag-gttccagtc-aaaatctcaataggATATTAAAAAATA s panTro5.chr22 28916595 205 + 37823149 GAAGTGGGCAAAAGCTAT---ATGAAAATTAGACACTTCACTGAACAACCCAAAAAAGCTCAAAACAAAAGGAAAGAAACAAACTAGCAGAACAAATGGTA----TAGCTGCATAAAAAGGGCTAGTATTGTAAAGACGTTAAGTCTCCACATATTAGTTTATAAAATTCTAATAG-GTTCCAGTC-AAAATCTCAATAGGGTATTAAAAAATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41191137 205 + 50109623 GAAGTGGGCAAAAGCTAT---ATGAAAATTAGAGACTTCACTGAACAACCCAAAAAAGCTCAAAACAAAAGGAAAGAAACAAACTAGCAGAACAAACGGTA----TAGCTACATAAAAAGGGCTagtattgtaaagacgttaagtctccacatattagtttataaaattctaatag-gttccagtc-aaaatctcaataggGTATTAAAAAAGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3213986 205 + 4464012 CAAGTGAGCAAAAGCTAT---ATGAAAATTAGAGACTTCACTGAACAACCCAAAAAAGCTCAAAACAAAAGGAAAGAAACAAACTAGCAGAACAAATGGTA----TAGCTAGATAAAAAGGGCTAGTATTGTAAAGACATTAAGTCTCCACATATTAGTTTATAAAATTCTAATAG-GTTCCAGTC-AAAATCTCAATAGGGTATTAAAAAATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106706462 205 - 115148730 caagtgggcaaaagctat---atgaaaattagagacttcactgaacaacccaaaaaagctcaaaacaaaatgaaagaaacaaactagcagaacaaatggta----tagctagataaaaagggctagtattataaagacgttaagtctccacatattagtttataaaactctaatag-gttccagtc-aaaatctcaatagggtattAAAAAATA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84325906 204 + 92844088 GAAGTGGGCAAAAGCTAT---ATGAAAATTAGAGACTTTACTGAACAACCCAAAAAAGCTCAAAACAAAATGAAAGAAACAAACTAGCAGAACAAACAGTA----TAGCTAGATAAAAATGGCTAGTATTATAAAGAGGTTAAGTCTCCACATATTAGTTTATAAAATTCTAATAG-GTTCCAGTC-AAAATCTCAATAGCGTATTAAAAAAG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87672270 204 - 96509753 GAAGTGGGCAAAAGCTAT---ATGAAAATTAGAGACTTTACTGAACAACCCAAAAAAGCTCAAAACAAAATGAAAGAAACAAACTAGCAGAACAAACAGTA----TAGCTAGATAAAAAGGGCTAGTATTATAAAGAGGTTAAGTCTCCACATATTAGTTTATAAAATTCTAATAG-GTTCCAGTC-AAAATCTCAATAGCGTATTAAAAAAG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7169240 204 - 13098629 GAAGTGGGCAAAAGCTAT---ATGAAAATTAGAGACTTTACTGAACAACCCAAAAAAGCTCAAAACAAAATGAAAGAAACAAACTAGCAGAACAAACAGTA----TAGCTAGATAAAAAGGGCTAGTATTATAAAGAGGTTAAGTCTCCACATATTAGTTTATAAAATTCTAATAG-GTTCCAGTC-AAAATCTCAATAGCGTATTAAAAAAG- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4129089 204 - 4483953 GAAGTGGGCAAAAGCTAT---ATGAAAATTAGAGACTTTACTGAACAACCCAAAAAAGCTCAAAACAAAATGAAAGAAACAAACTAGCAGAACAAACAGTA----TAGCTAGATAAAAAGGGCTAGTATTATAAAGAGGTTAAGTCTCCACATATTAGTTTATAAAATTCTAATAG-GTTCCAGTC-AAAATCTCAATAGCGTATTTAAAAAG- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24759257 204 + 33263144 GAAGTGGGCAAAAGCTAT---ATGAAAATTAGAGACTTTGCTGAACAACCCAAAAAAGCTCAAAACAAAATGAAAGAAACAAACTAGCAGAACAAACAGTA----TAGCtagataaaaagggctagtattataaagaggttaagtctccacatattagtttataaaattctaataa-gttccagtc-aaaatctcaataggGTATTAAAAAAG- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14040052 204 - 14338769 GAAGTGGGCAAAAGCTAT---ATGAAAATTAGAGACTTTACTGAACAACCCAAAAAAGCTCAAAACAAAATGAAAGAAACAAACTAGCAGAACAAACAGTA----TAGCTAGATAAAAAGGGCTAGTATTATAAAGAGGTTAAGTCTCCACATATTAGTTTATAAAATTCTAATAG-GTTCCAGTC-AAAATCTCAATAGCGTATTAAAAAAG- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 979138 204 + 1946073 GAAGTGGGCAAAAGCTAT---ATGAAAATTAGAGACTTTACTGAACAACCCAAAAAAGCTCATAACAAAATGAAAGAAACAAACTAGCAGAACAAACAGTA----TAGCTAGATAAAAAGGGCTAGTATTATAAAGAGGTTAAGTCTCCACATATTAGTTTATAAAATTCTAATAG-GTTCCAGTC-AAAATCTCAATAGGGTATTAAAAAAG- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2004956 205 - 2117846 GAAGTGGGCAAAAGCTGTATAATGAAAATTAAAGACTTTCCT-AACAATCCAAAAAAGCTCAAAACAAAATGAAACAAACAAACTAACAGAACAAACAGTA----TA-CTAGATAAAAAGGACTAGTATTATAAAGATGTTAAGTCCCCATATA--AGTTTATAAAATTCTAACAGAGTCCCAGTCAAAAATCTCAATCGGGTATTAAAAAAT- i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8917078 193 - 16357246 GAAGTGGGCAAAAGCTGTATCATGAAAATTAAAGACTTTT-------------AAAAGCTCAAAACAAAATGAAAGAAACAAACTAGCAGAACAAACAGTA----TA-CTAGATAAAATGGACTAGTATTGTACAGATGTTAAGTCTCCATATA--AGTTTATAAAATTCTAACAGGGTCCCATTCAAAAATCACAATCAAGtattaaaaaat- i saiBol1.JH378157 C 0 I 456 s cebCap1.NW_016107750v1 1400575 206 - 1807191 GAAGTGGGCAAAAGCTGTATCATGAAAATTAAAGACTTTACTAAACAGCACAAAAAAGCTCAAAACAAAATGAAAGAAACAAACTAGCAGAACAAACAGTA----TA-CTAGATAAAAAGGACTAGTATTACAAAGATGTTAAGTCTCCATATA--AGTTTATAAAATTCTAACAGGGTCCCAGTCAAAAATCTCAATCAGGTATTAAAAAAT- i cebCap1.NW_016107750v1 C 0 I 1 s aotNan1.NW_018512389v1 30818 206 - 704494 GAAGTGGGCAAAAGCGGTATCATGAAAATTAAAGACTTTCCTAAACAACCCAAAAAAGCTCAAAACAAAATGAAAGAAACAAACTAGCAGAACAAACAGTA----TA-CTAGATAAAAAGGACTAGTATTATAAAGATGTTAAGTCTCCATAAA--AGTTTATAAAATTCTCAAAGTGTCCCAGTCAAAAATCTCAATCGGGTATTAAAAAAT- i aotNan1.NW_018512389v1 C 0 I 1 s otoGar3.GL873526 36338050 204 - 42659167 GAAGTGGGCAAAAGCTCTATGATGAAAACTTTAAACTTTACCGATGGACCT--GAGATTTCAAAACAGAAT-----AAATACACCAGAACAACACACAGTACTTCTGGTTTATTAACAAAGGCCAGTATTACAAAGAGGGTAAGTCTCCACATACTAG-TTATAAAACTCTGATAGCATTCCAGTC-AAAATCTTGACAGGACATTAAAAAAA- i otoGar3.GL873526 I 30 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e canFam3.chr10 46145952 3549 - 69331447 I e proCoq1.NW_012136747v1 5133106 3954 - 6317780 I e micMur3.chr7 5771411 4685 + 108171978 I a score=42630.000000 s hg38.chr22_GL383582v2_alt 137234 7 + 162811 ATTTTTA s panTro5.chr22 28916800 7 + 37823149 ATTTTTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41191342 7 + 50109623 ATTTTTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3214191 7 + 4464012 ATTTTTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106706667 7 - 115148730 ATTTTTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84326110 5 + 92844088 --TTTTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87672474 5 - 96509753 --TTTTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7169444 5 - 13098629 --TTTTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4129293 5 - 4483953 --GTTTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24759461 5 + 33263144 --TTTTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14040256 5 - 14338769 --TTTTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 979342 5 + 1946073 --TTTTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2005162 7 - 2117846 TTTTTTA i calJac3.chrUn_GL286373 I 1 C 0 s cebCap1.NW_016107750v1 1400782 7 - 1807191 TTTTTTA i cebCap1.NW_016107750v1 I 1 C 0 s aotNan1.NW_018512389v1 31025 7 - 704494 TTTTTTA i aotNan1.NW_018512389v1 I 1 C 0 s otoGar3.GL873526 36338254 6 - 42659167 Attttt- i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e canFam3.chr10 46145952 3549 - 69331447 I e proCoq1.NW_012136747v1 5133106 3954 - 6317780 I e micMur3.chr7 5771411 4685 + 108171978 I e saiBol1.JH378157 8917271 456 - 16357246 I a score=1045876.000000 s hg38.chr22_GL383582v2_alt 137241 126 + 162811 Agactgggcgtggtggctcacgcctgtaa--tcccagcactttgagaggccaaggcaggcagaacacacgaggccaggag-ttcaagaccagcctggccattacagtgaaaccccgtctctactaaaaa s panTro5.chr22 28916807 126 + 37823149 Agactgggcgtggtggctcacgcctgtaa--tcccagcactttgagaggccaaggcaggcagaacacacgaggccaggag-ttcgagaccagcctggccattacagtgaaaccctgtctctactaaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41191349 126 + 50109623 Agactgggcgtggtggctcacgcctgtaa--tcccagcactttgagaggccaaggcaggcagaacacacgaggccaggag-ttcgagaccagcctggccattacagtgaaaccccgtctccactaaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3214198 126 + 4464012 Agactgggcatggtggctcacgcctgtaa--tcccagcactttgagagaccaaggcaggcagatcacatgaggccaggag-ttcgagaccagcctggccattatagtgaaaccccgtctctactaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106706674 128 - 115148730 Agactgggcgtggtggctcacccctgtaatctcccagcactttgagaggccaagccaggcagatcacatgaggccaggag-ttcaagaccagcctggccattatggtgaaaccccgtctctactaaaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84326115 127 + 92844088 Agactgggtgtggtggctcacgcctgtaa--tcccagcactttgaggcgccaaggcaggcagatcacatgaggccaagagttttaagaccagcctggccattatggcgaaacccggtctctattaaaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87672479 127 - 96509753 Agactgggtgtggtggctcacgcctgtaa--tcccagcactttgaggcgccaaggcaggcagatcacatgaggccaagagttttaagaccagcctggccattatggcgaaaccccgtctctattaaaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7169449 127 - 13098629 Agactgggtgtggtggctcacgcctgtaa--tcccagcactttgaggcgccaaggcaggcagatcacatgaggccaagagttttaagaccagcctggccattatggcgaaacccggtctctattaaaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4129298 126 - 4483953 Agactgggtgtggtggctcacgcctgtaa--tcccagcactttgaggcgccaaggcaggcagatcacatgaggccaagaa-tttaagaccagcctggccattatagcgaaacctggtctctattaaaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24759466 126 + 33263144 Agactgggtgtggtggctcacgcctgtaa--tcccagcactttgaggcgccaaggcaggcagatcacatgaggccaagag-tttaagaccagcctggccattatggcgaaacccggtctctattaaaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14040261 126 - 14338769 Agactgggtgtggtggctcacgcctgtaa--tcccagcactttgaggcgccaaggcaggcagatcacatgaggccaagag-tttaagaccagcctggtcattatggcgaaacccggtctctattaaaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 979347 126 + 1946073 Agactgggtgtggtggctcacgcctgtaa--tctcagcactttgagaggccgaggcaggtagatcacatgaggccaagag-ttcaagaccagcctggccattatggcgaaacccggtctctattaaaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2005169 125 - 2117846 AGACT-ggcatggtggctaaaacctgtaa--tcccagcactttgagaggccgaagcaggtagatcacatgaagccaggag-ttcaagaccagcctggccaatagagcaaaaccccgtctctactaaaaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8917727 123 - 16357246 ggccg-ggcacagtgattaacatctgtaa--tcctagcactctgggtggccgaggcaggcggatcaca--aggtcaagcg-atcaagactatcctggccaacatggtgaaaccctgtctctactaaaac i saiBol1.JH378157 I 456 C 0 s cebCap1.NW_016107750v1 1400789 114 - 1807191 AGACT-ggcatggtggctcacacctgtaa-------------tgagaggcagaagcaggcagatcacatgaagccaggag-ttcaagaccagcctggccaatagagcaaaaccccatctctactaaaaa i cebCap1.NW_016107750v1 C 0 I 134 s aotNan1.NW_018512389v1 31032 127 - 704494 AGACT-ggcatggtggctcacacccgtaatatcccaatactttgagaggctgaagcaggcagattacatgaagccaggag-ttcaagaccagcctggccaatagagcaaaaccccatatctactaaaaa i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36338260 20 - 42659167 ---------------------------------------------------------------------------------tttg----------------------gaaattccttc------aaata i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e canFam3.chr10 46145952 3549 - 69331447 I e proCoq1.NW_012136747v1 5133106 3954 - 6317780 I e micMur3.chr7 5771411 4685 + 108171978 I a score=107846.000000 s hg38.chr22_GL383582v2_alt 137367 11 + 162811 --tac-aaaaatta s panTro5.chr22 28916933 11 + 37823149 --tac-aaaaatta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41191475 11 + 50109623 --tac-aaaaatta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3214324 12 + 4464012 --tacaaaaaatta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106706802 11 - 115148730 --tac-aaaaatta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84326242 11 + 92844088 --tac-aaaaatta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87672606 11 - 96509753 --tac-aaaaatta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7169576 11 - 13098629 --tac-aaaaatta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4129424 11 - 4483953 --tac-aaaaatta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24759592 11 + 33263144 --tac-aaaaatta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14040387 11 - 14338769 --tac-aaaaatta i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 979473 11 + 1946073 --tac-aaaaatta i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2005294 11 - 2117846 --tag-aaaaatta i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8917850 11 - 16357246 --tac-aaaaatta i saiBol1.JH378157 C 0 I 4 s cebCap1.NW_016107750v1 1401037 11 - 1807191 --tac-aaaaatta i cebCap1.NW_016107750v1 I 134 I 4 s aotNan1.NW_018512389v1 31159 11 - 704494 --tag-aaaaatta i aotNan1.NW_018512389v1 C 0 I 1347 s otoGar3.GL873526 36338280 11 - 42659167 tatag-aaaagt-- i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e canFam3.chr10 46145952 3549 - 69331447 I e proCoq1.NW_012136747v1 5133106 3954 - 6317780 I e micMur3.chr7 5771411 4685 + 108171978 I a score=404159.000000 s hg38.chr22_GL383582v2_alt 137378 63 + 162811 gctgggcatggtggcacatgcccgtaatcctagctactcgagt-ggctgaggca-caagaatcac s panTro5.chr22 28916944 63 + 37823149 gctgggcatggtggcacatgcccgtaatcctagctactcgagt-ggctgaggca-caagaatcac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41191486 64 + 50109623 gctgggcatggtggcacatgcccgtaatcctagctactcgagt-ggctgaggcaccaagaatcac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3214336 63 + 4464012 gctgggcatggtggcacatgcccataatcctagctactcgagt-ggctgaggca-caagaatcac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106706813 63 - 115148730 gctggggatggtggcgcacgcctgtaatcctagctactcaagt-ggctgaggca-caagaatcac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84326253 63 + 92844088 gcggggcatggtggtgcacgcctgtaattccagctactcgggt-ggctgaggca-caagaatcac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87672617 63 - 96509753 gcggggcatggtggtgcacgcctgtaattccagctactcgggt-ggctgaggca-caagaatcac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7169587 63 - 13098629 gcggggcatggtggtgcacgcctgtaattccagctactcgggt-ggctgaggca-caagaatcac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4129435 63 - 4483953 gcggggcatggtggtgcacgcctgtaattccagctactcgggt-ggctgaggca-caagaatcac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24759603 63 + 33263144 gcggggcatggtggtgcacgcctgtaatcccagctactcaggt-ggctgaggca-caagaatcac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14040398 63 - 14338769 gcggggcatggtggtgcatgcctgtaattccagctactcgggt-ggctgaggca-caagaatcac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 979484 52 + 1946073 gcggggcatggtggtgcacgcctgtaatcccagctactcgggt-ggc------------aatcac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2005306 63 - 2117846 gccaggcgcagcgattaacatctgtaatcctagc-actctgggtggccgaggca-ggcggatcac i calJac3.chrUn_GL286373 I 1 I 415 s saiBol1.JH378157 8917865 63 - 16357246 gctatgcacggtggcatgtgccagtagtctcagctactctgga-ggctgaggca-ggagaatcaa i saiBol1.JH378157 I 4 C 0 s cebCap1.NW_016107750v1 1401052 63 - 1807191 ggcatgcatggtggcatgtgccagtagtctcagctactctgga-ggctgaggca-ggagaatcaa i cebCap1.NW_016107750v1 I 4 C 0 s otoGar3.GL873526 36338291 22 - 42659167 gcagg-----------------catagtccaaagtactc-------------------------- i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 31170 1347 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e canFam3.chr10 46145952 3549 - 69331447 I e proCoq1.NW_012136747v1 5133106 3954 - 6317780 I e micMur3.chr7 5771411 4685 + 108171978 I a score=738269.000000 s hg38.chr22_GL383582v2_alt 137441 127 + 162811 ttgaactctgga------ggctgcagtgagctaagatcgttccattg----cactccagcctgggagacagagcaacagcctctctc-aaaaaaa----aatagtaattttaaat----tacttcaaatgtacagaaaagtgcaaa s panTro5.chr22 28917007 127 + 37823149 ttgaactctgga------ggctgcagtgagctaagatcgttccattg----cactccagcctgggagacagagcaacagcctctctc-aaaaaaa----aataataattttaaat----tacttcaaatgtacagaaaagtgcaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41191550 127 + 50109623 ttgaactctgga------ggctgcagtgagctaagatcgttccattg----cactccagcctgggagacagagcaacagcctctctc-aaaaaaa----aataataattttaaat----tacttcaaatgtacagaaaagtgcaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3214399 131 + 4464012 ttgaactctgga------ggctgcagtgagctaagatcgttccattg----cactccagcctgggagacagagcaacagcctctctc-aaaaaaaaaaTAATAATAattttaaat----tacttcaaatgtacagaaaagtgcaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106706876 127 - 115148730 ttgaactctgga------ggctgcagtgagctaagatggtgccactg----cactccagcctgggagacagagcaagagcctctctc-aaaaaaa----taaaataattttaaat----tacttcaaatgtacagaaaagtgcaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84326316 124 + 92844088 ttgaaccctgga------gactgcagtgagctaagatcatgccactg----cactccagcctgggagagagagcaagagcctctctc-aaaaaaa------TAATGA-tttaaat----tatttcaaatgtacagaaaagtacaag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87672680 124 - 96509753 ttgaaccctgga------gactgcagtgagctaagatcatgccactg----cactccagcctgggagagagaacaagagcctctctc-aaaaaaa------taatga-tttaaat----tatttcaaatgtacagaaaagtacaag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7169650 124 - 13098629 ttgaaccctgga------gactgcagtgagctaagatcatgccactg----cactccagcctgggagagagagcaagagcctctctc-aaaaaaa------TAATGA-tttaaat----tatttcaaatgtacagaaaagtgcaag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4129498 124 - 4483953 ttgaaccctgga------gactgcagtgagctaagatcatgccactg----cactccagcctgggagagagagcaagagcctctctc-aaaaaaa------TAATGA-tttaaat----tatttcaaatatacagaaaagtgcaat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24759666 124 + 33263144 ttgaaccctgga------gactgcagtgagctaagatcatgccactg----cactccagccttggagagagagcaagagcctctctc-aaaaaaa------taatga-tttaaat----tatttcaaatgtacagaaaagtgcaag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14040461 124 - 14338769 ttgaaccctgga------gactgcagtgagctaagatcatgccactg----cactccagcctgggagagagagcaagagcctctcta-aaaaaaa------TAATGA-tttaaat----tatttcaaatatacagaaaagtgcaat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 979536 129 + 1946073 ttgaaccctgga------gactgcagtgagctaagatcatgccactacactcactccagcttgggagacagagcaagagcctctctcaaaaaaaa------TAATGA-tttaaat----tatttcaaatgtacagaaaagtgcaag i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8917928 126 - 16357246 ttaaaccctggaggtagaggccgcagtgagccaaaatcgcgccaccg----cactctagcctgggagacagagcaagaccctgcctc-gaaaata-----------a----aaataataaatttcaaatgtacagaaaagggcaag i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1401115 122 - 1807191 ttaaaccctggaggtaggggctgcagtgagccgagatcacgccactg----cactctagcctgggagacagagcaagaccctgcctc-aaaaata-----------a----aaat----aatttcaaatgtacagaaaagtgcaag i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36338313 5 - 42659167 -----------------------------------------------------------------agaca---------------------------------------------------------------------------- i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 31170 1347 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e canFam3.chr10 46145952 3549 - 69331447 I e proCoq1.NW_012136747v1 5133106 3954 - 6317780 I e micMur3.chr7 5771411 4685 + 108171978 I e calJac3.chrUn_GL286373 2005369 415 - 2117846 I a score=3594873.000000 s hg38.chr22_GL383582v2_alt 137568 385 + 162811 aatagttcaaagggctcacataccctctttcaacgagattct-ccaactga---t-gctttacctcatttgctccattatcttttcctgaccc-ctttgagagcaggctgaaggcatgaagc--tccattgttgctcaatactctagtgcgttatttccaaaaacaaggacattctcctccataaccagcatacaa-gcctccacatcaggaaatcaacactgat--actacactctcaatccaatccatagaccccatttgaattttgtcagctgtcccaacaatgtc----tttcctttctagtccaggagtctaccccagagctacatctcaccagtgtcaatcaatctggaatagttcccttttctcttcctgacttccatgtccctgccagagta s panTro5.chr22 28917134 385 + 37823149 aatagttcaaagagctcacataccctctttcaacgagattct-ccaactga---t-gctttacatcatttgctccattatcttttcctgaccc-ctttgagagcaggctgaaggcatgaagc--tccattgttgctcaatactctagtgcgttatttccaaaaacaaggacattctcctccataaccagcatacaa-gcctccacatcaggaaatcaacactgat--actacactctcaatccaatccatagaccccatttgaattttgtcagctgtcccaacaatgtc----tttcctttctagtccaggagtctaccccagagctacatctcaccagtgtcaatcaatctggaatagttcccttttctcttcctgacttctatgtccctgccagagta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41191677 385 + 50109623 aatagttcaaagggctcacataccctctttcaacgagattct-ccaactga---t-gctttacatcatttgctccattatcttttcctgaccc-ctttgagagcaggctgaaggcatgaagc--tccattgttgctcaatactctagtgcgttatttccaaaaacaaggacattctcctccataaccagcatacaa-gcctccacatcaggaaatcaacactaat--actacactctcaatccaatccatagaccccatttgaattttgtcagctgtcccaacaatgtc----tttcctttctagtccaggagtctaccccagagctacatctcaccagtgtcaatcaatctggaatagttcccttttctcttcttgacttccatgtccctgccagagta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3214530 386 + 4464012 aatagttcaaagggctcacataccctc-ttcaacgagattct-ccaactga---t-gctttacatcatttgctccattatcttttcctgaccc-gtttgagagtaggctgaaggcatgaagc--tccattgttgctcaatactctagtgcgttatttccaaaaacaaggacattctcctccataaccagcatataa-gcctccacatcaggaaatcaacactgat--actacactctcaatccaatccatagaccccatttgaattttgtcagctgtcccaacaatgtc--tttttcctttctagtccaggagtctaccccagagctacatctcaccagtgtcaatcaatctggaatagttcccttttctcttcctgacttccatgtccctgccagagta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106707003 386 - 115148730 aatagttcaaagggctcacataccctc-ttcaacgagattct-ccaactga---t-gctttacatcatttgctccattatctttttctggccc-ctttgagagcaggctgaaggcatgaagt--cccattgttgctcaatactctactgcgttatttccaaaaacaaggacattctcctccataaccagcatacaa-gcctccacatcaggaaatcaacactgat--actacactctcaatccaatccatagaccccatttgaattttgtcagctgtcccaacaatgtc--tttttcctttctggtccaggagtctaccccagagctacatctcaccagtgtcaatcaatctagaatagctcccttttctcttcctgacttccatgtccctgccagagta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84326440 388 + 92844088 aatagttcaaagggctcacatatcctc-ttcagcgagattct-ccaactga---t-gttttacatcatttgctccgttatcttttcctgaccc-ctttgagagcaggttgaaggtatgaagc--cccactgttgctcaatactgtagtgcgttatttcaaaaaacaagaacattctcctctataactagcatacaa-gtctccacattaggaaatcaacactgat--actacactctcaatccaatccacagaccccatttgaattttgtcaactgtcccaacaatgtctctttttcctttctggtccaggagtctaccccagagctacatctcaccagtgtcaatcagtctggaatagttcccttttctcttcctgacttccatgtccctgccagagta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87672804 388 - 96509753 aatagttcaaagggctcacataccctc-ttcagcgagattct-ccaactga---t-gttttacatcatttgctccgttatcttttcctgaccc-ctttgagagcaggttgaaggtatgaagc--cccactgttgctcaatactgtagtgcgttatttcaaaaaacaaggacattctcctctataactagcatacaa-gtctccacattaggaaatcaacactgat--actacactctcaatccaatccacagaccccatttgaattttgtcaactgtcccaacaatgtctctttttcctttctggtccaggagtctaccccagagctacatctcaccagtgtcaatcagtctggaatagttcccttttctcttcctgacttccatgtccctgccagagta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7169774 388 - 13098629 aatagttcaaagggctcacataccctc-ctcagcgagattct-ccaactga---t-gttttacatcatttgctccgttatcttttcctgaccc-ctttgagagcaggttgaaggtatgaagc--cccactgttgctcaatactgtagtgcgttatttcaaaaaacaaggacattctcctctataactagcatacaa-gcctccacattaggaaatcaacactgat--actacactctcaatccaatccacagaccccatttgaattttgtcaactgtcccaacaatgtctctttttcctttctggtccaggagtctaccccagagctacatctcaccagtgtcaatcagtctggaatagttcccttttctcttcctgacttccatgtccctgccagagta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4129622 388 - 4483953 aatagttcaaagggctcacttaccctt-ttcagcgagattct-ccaactga---t-gttttacatcatttgctccgttatcttttcctgaccc-ctttgagagcaggttgaaggtatgaagc--cccactgttgctcaatactctagtgcgttgtttcaaaaaacaaggacattctcctctataactagcatacaa-gcctccacattaggaaatcaacactgac--acaacactctcaatccaatccacagaccccatttgaattttgtcaactgtctcaacaatgtctctttttcctttccggtccaggagtctaccccagagctacatctcaccagtgtcaatcaatctggaatagttcccttttctcttcctgacttccatgtccctgccagagta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24759790 388 + 33263144 aatagttcaaagggctcacataccctc-ttcagcgagattct-ccaactga---t-gttttacatcatttgctccgttatcttttcctgaccc-ctttgagagcaggttgaatgtatgaagc--cccactgttgctcaatactctagtgcgttatttcaaaaaacaaggacattctcctctataactagcatacaa-gcctccacattaggaaatcaacactgat--actacactctcaatccaatccacagatcccatttgaattctgtcaactgtcccaacaatgtctctttttcctttctggtccaggagtctaccccagagctacatcttaccagtgtcaatcaatctggaatagttcccttttctcttcctgacttccatgtccctgccagagta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14040585 388 - 14338769 aatagttcaaagggctcacataccctt-ttcagcgagattct-ccaactga---t-gttttacataatttgctccattatcttttcctgaccc-gtttgagagcaggttgaaggtatgaagc--cccactgttgctcaatactctagtgcgttgtttcaaaaaacaaggacattctcctctataactagcatacaa-gcctccacattaggaaatcaacactgat--acaacactctcaatccaatccacagaccccatttgaattttgtcaactgtcccaacaatgtctctttttcctttccggtccaggagtctaccccagagctacatctcaccagtgtcaatcaatctggaatagttctcttttctcttcctgacttccatgtccctgccagagta i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 979665 388 + 1946073 actagttcaaagggctcatataccctc-ttcagcgagattct-ccaactga---t-gttttacatcatttgctctgttatcttttcccaaccc-ctttgagagcaggttgaaggcatgaagc--cccactgttgctcaatactctagtgcgttatttccaaaaacaaggatattctcctccataactagcatacaa-gcctccacatcaggaaatcaacactaat--actacattctcaatccaatccacagaccccatttgaattttctcaactgtcccaacaatgtctctttttcctttctggtccaggagtctaccccagagctacatctcaccagtgtcaatcaatctggaatagttcccttttctcttcctgacttccatgtccctgccagagta i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2005784 392 - 2117846 agtagttcaaagtgctcacacaccctc-ttcaatgagactctcccaactga---tagttttacatcatttgctccattaccttttcctgaccc-ctttgagagcaggctaaagacatgaagcctcctattgtcgctcaatactttagtgagttatttccaaaaacaaggacactcttctccataagcagcatacaa-gcctccacatcaggacatcaacactgat--actagagtctcaacccaatccacagactccatttgaattctgtcaactgtctcaacaatgtctctttttcctttctggtctaggagtacagcccagagctatgtctccccagtgtcaatcaatctggaatagttcccttttctcttcctgacttccatgtccctgccagagta i calJac3.chrUn_GL286373 I 415 I 1 s saiBol1.JH378157 8918054 394 - 16357246 aatagttcaaagtgctcacacgtcctc-ttcaatgagactctcccaactga---tggttttacatcatttgttccattaccttttcctgaccc-ctttgagagcaggctaaagacatgaagcctcccattgttgctcaatacttcaatgacttatttccaaaaacaaggacactcttctccataaccagcatacaa-gtctccacatcaggaaatcaacactgattaactacagtctcaacccaatccacagaccccatttgaattttgtcaactgtctcaacaatgtctctttttcctttctggtctatgagtctagtccagagttatgtctccccagtgtcaatcaatctggaatagttcccttttctcttcctgacttccatatccctgctggagta i saiBol1.JH378157 C 0 I 1 s cebCap1.NW_016107750v1 1401237 379 - 1807191 aatagttcaaagtgctcacacatcctc-ttcaatgagactctcccaactga---tggttttatatcatttgctccattaccttttcctgaccc-ctttgagagcagactaaagacataaagcctcccattgtcgctcaatacttcagtgagttacttccaaaaacaaggacactcttctccataaccagcatataa-gcctccacatcaggaaatcaacactgat--actacagtctcaacc-------------ccatttgaattttatcgactgtctcaacaatgtctctttttcctttctggtctaggagtctagcccagagctatgtctcctcagtgtcaatcaatctggaatagttcccttttctcttcctgatttccatgtccctgccggaata i cebCap1.NW_016107750v1 C 0 I 1 s otoGar3.GL873526 36338318 363 - 42659167 ----------------------tccct-ttcaacaaaattcc-ccaaatgacact-gttgtatatgatttattccattaccttttcctggcttaaactgataacaagatgaagaaa-ggagc--ctcactgtccctaaattcttcagtgaa-tatttctaaaaacaaggacatgttcctagataaccagcacacaacgtctgcacatccagaaatcaacactgat--actataccatcaatctaatccgcagacctcatttgaattttgtcaactgccccaacaatgtc--ccttttccttatggtccaggatcccatccagga---atgtttcaccaaagtctgtcaatctggaagagttcctcagtct-ttcctgacttccatgcccctgccagagta i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 31170 1347 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e canFam3.chr10 46145952 3549 - 69331447 I e proCoq1.NW_012136747v1 5133106 3954 - 6317780 I e micMur3.chr7 5771411 4685 + 108171978 I a score=1827662.000000 s hg38.chr22_GL383582v2_alt 137953 186 + 162811 aagtcttttcattttgcaggataaccctcaatctga------tctgtatttcctcgtgaccggactcaggtcatgcttccttagcggcaataccagacacatggtgctgtattcttcccaggacattgcataagaagaagactgatggcaacccatcccactactgctgat----atttacCACATtcacctggtc s panTro5.chr22 28917519 186 + 37823149 cagtcttttcattttgcaggataaccctcaatctga------tctgtatttcctcatgaccggactcaggtcatgcttccttagcggcaataccagacacatggtgctgtgttcttcccaggacattgcataagaagaagactgatggcaacccatcccactactgctgat----atttacCATATtcacctggtc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41192062 186 + 50109623 cagtcttttcattttgcaggataaccctcaatctga------tctgtatttcctcatgaccggactcaggtcatgcttccttagcggcaataccagacacatggtgctgtgttcttcccaggacattgcataagaagaagactgatggcaacccatcccactactgctgat----atttacCATATtcacctggtc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3214916 186 + 4464012 cagtcttttcattttgcaggataaccctcaatctga------tctgtatttcctcatgaccggactcaggtcatgcttccttagtggtaataccagacacatggtgctgtgttcttcccaggacattgcataagaagaagactgatggcaacccatcccactactgctgat----atttacCATATtcacctggtc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106707389 186 - 115148730 cagtcttttcattttgcaggataaccctcaatctga------tctgtatttcttcatgaccagactcaggtcatgcttccttagcggcaataccagacacatggtgccgtgttcttcccaggacattgcataagaagaagactgatggcaacccatcccactactgctgat----atttaccATATtcacctggtc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84326828 183 + 92844088 cagtcttttcattttgcaagatgaccctcaatctga------tctgtatttcctcaggaccagactcaggtcatgcttccttagtggcaataccagacacatggtgctgtgttcttcccagggcattgcat---cagaagacagatggcaacccagcccactactgctgat----atttaccATATtcacctgatc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87673192 183 - 96509753 cagtcttttcattttgcaagatgaccctcaatctga------tctgtatttcctcaggaccagactcaggtcatgcttccttagtggcaataccagacacatggtgctgtgttcttcccagggcattgcat---cagaagacagatggcaacccagcccactactgctgat----atttacCATATtcacctgatc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7170162 183 - 13098629 cagtcttttcattttgcaagatgaccctcaatctga------tctgtatttcctcaggaccagactcaggtcatgcttccttagtggcaataccagacacatggtgctgtgttcttcccagggcattgcat---cagaagacagatggcaacccagcccactactgctgat----atttaccATATtcacctgatc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4130010 183 - 4483953 cagtcttttcattttgcaagatgaccctcaatctga------tctgtatttcctcaggaccagactcaggtcatgcttccttagtggcaataccagacacatggtgctgtgttcttcccagggcattgcat---cagaagacagatggcaacccagcccactactgctgat----atttacCATATtcacctgatc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24760178 183 + 33263144 cagtcttttcattttgcaagatgaccctcaatctga------tctgtatttcctcaggaccagactcaggtcatgcttccttagtggcaataccagacacatggtgctgtgttcttcccagggcattgcat---cagaagacaaatggcaacccagcccactactgctgat----atttacCATATtcacctgatc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14040973 183 - 14338769 cagtcttttcattttgcaagatgaccctcaatctga------tctgtatttcctcaggaccagactcaggtcatgcttccttagtggcaataccagacacatggtgctgtgttcttcccagggcattgcat---cagaagacagatggcaacccagcccactactgctgat----atttacCATATtcacctgatc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 980053 183 + 1946073 tagtcttttcattttgcaagatgaccctcaatctga------tctgtatttcctcaggaccagactcaggtcatgcttccttagtggcaataccagacacatggtgctgtgttcttcccagggcattgcat---cagaagattgatggcaacccagcccactactgctgat----atttacCATATtcacctgatc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2006177 180 - 2117846 ga--cttttcattttgcaggatgaccttcaatctca------tctgtatttcctcatgaccaaattctggtcatgctttctcagcagcaataccagacacacagtggtgtgttcttcccagtgcaatgcatcagaagacgactgatggcaattcctcccacag----tgat----gtttacCATATtcacctggtc i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8918449 182 - 16357246 aagtcttttcattttgcagaatgaccttcaatctga------tcagtatttcctcatgaccagactcagatcatgctttcttaatagcaataccagacacacagtggtgtgttcttcccagtgcaatgcatcagaagaagaccgatggcaactcatcccacag----tgat----gtttacCATATtcacctggtc i saiBol1.JH378157 I 1 C 0 s cebCap1.NW_016107750v1 1401617 182 - 1807191 aaatcttttcattttgcaggatgaccttcaatctga------tctgtatttcctcatgaccagactcaggtcatgctttcttagcagcaataccagacacacagtggtgtgttcttcccagtgcaatgcatcagaagaagaccgatggcaactcatcccacag----tgat----gtttacCATATtcacctggtc i cebCap1.NW_016107750v1 I 1 C 0 s aotNan1.NW_018512389v1 32517 179 - 704494 aagtcttttcattttgcaggatgaccttcaatctga------tctgtatttcctcatgaccagactcagatcaagctttcttagcagcagtaccagacacacagtggtgtgttcttcccagtgcaatgcatcagaa---gactgatggcaactcatctcacag----tgat----gtttacCATATtcacctggtc i aotNan1.NW_018512389v1 I 1347 C 0 s otoGar3.GL873526 36338681 180 - 42659167 cagtcttg--attttgtgggatgaccctgggtctgagtctagtctacgcttcctcacaaccagactccagtcatg-ttctctgggagcaactgcagacacacagtgctgcgctccccacagtgcaccgcac------------aatggagaccca-cctgccattgaggataaccattaactatattcatctggtc i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e canFam3.chr10 46145952 3549 - 69331447 I e proCoq1.NW_012136747v1 5133106 3954 - 6317780 I e micMur3.chr7 5771411 4685 + 108171978 I a score=24361.000000 s hg38.chr22_GL383582v2_alt 138139 2 + 162811 aa s panTro5.chr22 28917705 2 + 37823149 aa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41192248 2 + 50109623 aa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3215102 2 + 4464012 aa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106707575 2 - 115148730 aa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84327011 2 + 92844088 aa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87673375 2 - 96509753 aa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7170345 2 - 13098629 aa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4130193 2 - 4483953 aa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24760361 2 + 33263144 aa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14041156 2 - 14338769 aa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 980236 2 + 1946073 aa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2006357 2 - 2117846 aa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8918631 2 - 16357246 aa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1401799 2 - 1807191 aa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 32696 2 - 704494 ca i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5137060 2 - 6317780 aa i proCoq1.NW_012136747v1 I 3954 C 0 s otoGar3.GL873526 36338861 2 - 42659167 aa i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e canFam3.chr10 46145952 3549 - 69331447 I e micMur3.chr7 5771411 4685 + 108171978 I a score=23847.000000 s hg38.chr22_GL383582v2_alt 138141 2 + 162811 gc s panTro5.chr22 28917707 2 + 37823149 gc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41192250 2 + 50109623 gc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3215104 2 + 4464012 gc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106707577 2 - 115148730 gc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84327013 2 + 92844088 gt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87673377 2 - 96509753 gt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7170347 2 - 13098629 gt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4130195 2 - 4483953 gt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24760363 2 + 33263144 gt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14041158 2 - 14338769 gt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 980238 2 + 1946073 gc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2006359 2 - 2117846 gc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8918633 2 - 16357246 gc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1401801 2 - 1807191 gc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 32698 2 - 704494 gc i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5137062 2 - 6317780 gc i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36338863 2 - 42659167 gc i otoGar3.GL873526 C 0 I 3606 s canFam3.chr10 46149501 2 - 69331447 GC i canFam3.chr10 I 3549 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e micMur3.chr7 5771411 4685 + 108171978 I a score=3581185.000000 s hg38.chr22_GL383582v2_alt 138143 300 + 162811 ttattagagat----gtagtgtctc-aggccccacagacctacaggatcagattctgcatgttaacaaggtcactagcaagtcacacatatgttac-tgtttgtgaagtacCAGTGAAAGGTCTTATAAAAAGTAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaaactatagagtggcatgatctggtttcagttcttaaatggctcctctggctgttttgtggaaaacagaccaggggaggggcaaggacag----agcagggaattagttag---------tt-ggtagtctggtt s panTro5.chr22 28917709 300 + 37823149 ttattagagat----gtagtgtctc-aggccccacagacctacaggatcagattctgcatgttaacaaggtcactagcaagtcaaacatatgttac-tgtttgtgaagtacCAGTGAAAGGTCTTATAAAAAGTAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaaactatggagtggcatgatctggtttcagttcttaaatggctcctctggctgttttgtggaaaacagaccaggggaggggcaaggacag----agcagggaattagttag---------tt-ggtagtctggtt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41192252 300 + 50109623 ttattagagat----gtagtgtctc-aggccccacagacctacaggatcagattctgcatgttaacaaggtcactagcaagtcacacatatgttac-tgtttgtgaagtacCAGTGAAAGGTCTTATAAAAAGTAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaaactatagagtggcatgatctggtttcagttcttaaatggctcctctggctgttttgtggaaaacagaccaggggaggggcaaggacag----agcagggaattagttag---------tt-ggtagtctggtt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3215106 300 + 4464012 ttattagagat----gtagtgtctc-aggccccacagacctacaggatcagattctgcatgttaacaaggtcactagcaagtcacacatatgttac-tgtttgtgaagtacCAGTGAAAGGTCTTATAAAAAGTAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaaactatagagtggcatgatctggtttcagttcttaaatggctcctctggctgttttgtggaaaacagaccaggggacgggcaaggacag----agcagggaattagttag---------tt-ggtagtctggtt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106707579 296 - 115148730 ttattagagat----gcagtgtctc-aggccccacagacctacaggatcagattctgcatgttaacaaggtcactagcaagtcacacatatgttac-tgtttgtgaagtacCAGTGAAAGGTCTTATAAAAAGTAACAGCCACATGGGGAAGTTCGGATTTTattagaagcccttggagggttttaagctatagagtggcatgatctggtttcagtttttaaatggctcctctggctgttttgtggaaaacagaccaggggaggcgcaaggacag----agcggggaa----ttag---------tt-ggtagtctggtt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84327015 296 + 92844088 ttattagagat----atagtgtctcaaggccccacagacctacaagatcagattctgcatgttaacaaggtcactagcaagtcacacacatgttgc-tgtttgagaagtaTCAGTGAAAGGTCTTATAAAAAGAAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaagctatagagtggcatgatctggtttcagttctcaaatggctcctttggctgttttgtggaaagcagaac-ggggaggggcaaggacag----agcagggag----ttag---------tt-ggtagtctggtt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87673379 296 - 96509753 ttattagagat----atagtgtctcaaggccccacagacctacaagatcagattctgcatgttaacaaggtcactagcaagtcacacacatgttgc-tgtttgagaagtaTCAGTGAAAGGTCTTATAAAAAGAAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaagctatagagtggcatgatctggtttcagttctcaaatggctcctttggctgttttgtggaaagcagaac-ggggaggggcaaggacag----agcagggag----ttag---------tt-ggtagtctggtt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7170349 296 - 13098629 ttattagagat----atagtgtctcaaggccccacagacctacaagatcagattctgcatgttaacaaggtcactagcaagtcacacacatgttgc-tgtttgagaagtaTCAGTGAAAGGTCTTATAAAAAGAAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaagctatagagtggcatgatctggtttcagttctcaaatggctcctttggctgttttgtggaaagcagaac-agggaggggcaaggacag----agcagggag----ttag---------ct-ggtagtctggtt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4130197 296 - 4483953 ttattagagat----atagtgtctcaaggccccacagacctacaagatcagattctgcatgttaacaaggtcactagcaagtcacacacatgttgc-tgtttgagaagtaTCAGTGAAAGGTCTTATAAAAAGTAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaagctatagagtggcatgatctggtttcagttctcaaagggctccttcggctgttctgtggaaagcagaac-ggggaggggcaaggacag----agcagggag----ttag---------ct-ggtagtctggtt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24760365 290 + 33263144 ttattagcgat----atagtgtcttaaggccccacagacctacagga------tctgcatgttaacaaggtcactagcaagtcacacacatgttgc-tgtttgagaagtaTCAGTGAAAGGTCTTATAAAAAGTAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaagctatagagtggcatgatctggtttcagttctcaaatggctcctttggctgttttgtggaaagcagaac-ggggaggggcaaggacag----agcagggag----ttag---------tt-ggtagtctggtt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14041160 295 - 14338769 ttattagagat----atagtgtctcaaggccccacagacctacaagatcagattctgcatgttaacaaggtcactagcaagtcacacacatgttgc-tgtttgagaagcaTCAGTGAAAGGTCTTATAAAAAGTAAGAGCCACATGGGG-ATTTCAGATTTTattagaagcctttggagggttttaagctatagagtggcatgatctggtttcagttctcaaacggctcctttggctgttttgtggaaagcagaac-ggggaggggcaaggacag----agcagggag----ttag---------tt-ggtagtctggtt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 980240 295 + 1946073 ttattagagat----gtagtgtctcaaggccccacagacctacaggatcagattctgcatgttaacaaggtcactagcaagtcacacacatgttgc-tgtttgagaagtaTCAGTGAAAGGTCTTATAAAAAGTAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaagc-atagagtgacatgatctggtttcagttctcaaatggctcctctggctgttttgtggaaagcaggac-agggaggggcaaggacag----aacagggag----ttag---------tt-ggtagtctggtt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2006361 295 - 2117846 ttattagagacgtaggtagtgtctt-aggccccacagacctacagaatcagattctgcatgttaacaaggtcaccagcaagtcacaca----ttac-tgttcatgaagtacCAGTGAAAGGTCTTACGAAAAGTGAGAACCACA-GGGGAAGTTTAAATTTTattagaagcctttggagggttttaagctatagagtggcatgctctggtttcagttctcaaatagttcctctggctgttttgtgggaaacagaccaggggagagccaaggacag----agc----agttagttag---------ct-ggtagtctggtt i calJac3.chrUn_GL286373 C 0 I 311 s saiBol1.JH378157 8918635 296 - 16357246 ttattagagat----gtagtgtctg-aggccccacagacctacagcatcagattctgcacattaacaaggtcactagCAAGTCACACA--TTTTAC-TGTTCATGAAGTACCAGTGAAAGGTCTTATGAAAAGTAAGAGCCACA-GGGGAAGTTTAAATTTTattagaagcctttggaaggttttaagctacagagtggcatgatctggtttcagttctcaaatagttcctctggctgttttgtgggaaacagacc-ggggagcaccaaggacag----agcaaagagtgagttag---------ct-ggtagtctggtt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1401803 297 - 1807191 ttattagagat----gtagtatctc-aggccccacagacctacaggatcagattctgcacgttaacaaggtcactagcaagtcacaca--tgttac-tgttcgtgaagtacCAGTGAAAGGTCTTATGAAAATTAAGAGCCACA-GGGGAAGTTTAAATTTTattagaagcgtttggagggttttaagccatagagtggcatgctctggtttcagttctcaaatagttcctctggctgttttgtgggaaaccgaccaggggagagccaaggacag----agcagggagtgagttag---------ct-ggtagtctggtt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 32700 297 - 704494 ttattagagat----gtaatgtctc-aggccccacagacctacaggatcagattctgcacgttaacaaggtcactagcaagtcacaca--tgttac-tgttcgtgaagtacCAGTGAAAGGTCTTATGAAAAGTGAGAGCCACA-AGGGAAGTTTAAATTTTattagaagcctttggagggttttaagctatagagtggcatgctctggtttcagttctcaaatagttcctctggctgttttgtggcaaacagactaggggagagccaaggacag----agcagggagtgagttag---------ct-ggtcgtctggta i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5137064 294 - 6317780 tcattagagat----gcagagtctc-aggccccaaggacccacagaagcagattccacatgttaacaaggtcaccagcaagtcacacatatggtac-tgtttgaaaagtaTCGGtgaaaggccttgtaaaagttaagggccaca-tgggaagtttggattttattagaagcctttggagggttttgagc--cagagcggcatgctctggtttcagttctcaaatggctgctctggctgttttgtagaaaacagactctgggcagaacagggagtg----agtggagag----ctat---------tttggtagtctgggt i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36342471 298 - 42659167 tcattagagat----acacaatctt-aggccctgaggactcacagaatcagattccacatgttaacaaggtcaccagcaagtcacacatatggtac-tgtttgagaagtattgGtgaaaggccttgtaaaagttaagggccaca-tgggaagtttggattttatgagaagcctttggagggttttgagg--cagagtggcatgctctggttttagttctcaaacagctgctctggctgttttgtggaaaacagactaaggggagagcagggagtgacttagtggaaag----ctat---------ttaagtagttggggt i otoGar3.GL873526 I 3606 C 0 s canFam3.chr10 46149503 295 - 69331447 TCGCTGGAGGT----GCAGAGCTT--GGTCTCCAAGGGTCTAGACAATCAGTATCTGCATG-TAATGAGCTCC----CGAAGCATGTGCACGCTACAGGTTTGAAAAATACTGGCGAaggaccttgtaa---------gtcatg-taagaattttggattttattagaaggctttagagagttttgagctaaagagtgacatgctctggtttcaattctcgagtggccactctgattgttctgtggaaaacagactttgggaggggccagggcaga---agtagggagttagttaagaagctatttt-agtcatctgggt i canFam3.chr10 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e micMur3.chr7 5771411 4685 + 108171978 I a score=401572.000000 s hg38.chr22_GL383582v2_alt 138443 31 + 162811 aagggacgtt---ggctgcatgggtgaatgtggt s panTro5.chr22 28918009 31 + 37823149 aagggatgtt---ggctgcatgggtgaatgtggt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41192552 31 + 50109623 aagggatgtt---ggctgcatgggtgaatgtgtt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3215406 31 + 4464012 aagggatgtt---ggctgcatgggtgaatgtggt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106707875 31 - 115148730 aagggatgtt---ggctgcatgggtgaatgtggt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84327311 31 + 92844088 aagggatatt---ggctgcatgggtgaatgtggt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87673675 31 - 96509753 aagggatatt---ggctgcatgggtgaatgtggt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7170645 31 - 13098629 aagggatatt---ggctgcatgggtgaatgtggt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4130493 31 - 4483953 aagggatatt---ggctgcataggtgaatgtggt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24760655 31 + 33263144 aagggatatt---ggctgcatgggtgaatgtggt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14041455 31 - 14338769 aagggatatt---ggctgcatgggtgaatgtggt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 980535 31 + 1946073 aacggatatc---ggctgcatgggtgaatgtggt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2006967 31 - 2117846 aaaggatgct---ggcttcatgggtggatgtggt i calJac3.chrUn_GL286373 I 311 C 0 s saiBol1.JH378157 8918931 31 - 16357246 gaaggatgct---gatttcatgggtgaatgtggt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1402100 31 - 1807191 aaaggatgct---ggtttcatgggtgactgtggt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 32997 31 - 704494 aaaggatgct---ggcttcatgggtgaatgtggt i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5137358 31 - 6317780 agaggatgtt---ggctgcatgtgtgaatggggt i proCoq1.NW_012136747v1 C 0 I 47 s otoGar3.GL873526 36342769 34 - 42659167 aagggatgctaccagccacatgggtgagtggggt i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46149798 31 - 69331447 aagggatgtt---ggctgcatagatgaatgtggt i canFam3.chr10 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e micMur3.chr7 5771411 4685 + 108171978 I a score=391753.000000 s hg38.chr22_GL383582v2_alt 138474 42 + 162811 gttgatggaggtagtgacacacagtcaa--aacggacacagtct s panTro5.chr22 28918040 42 + 37823149 gttgatggaggtagtgacacacggtcaa--aacggacaccgtct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41192583 42 + 50109623 gttgatggaggtagtgacacacggtcaa--aatggacacagtct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3215437 41 + 4464012 gttgatggaagtggtgacacac-gtcaa--aacggacaaagttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106707906 42 - 115148730 gttgatggaggtggtgacacatggtcaa--aacggacacagttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84327342 42 + 92844088 gttgatggaggtggtgacacatggtcaa--aaaagacacagttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87673706 42 - 96509753 gttgatggaggtggtgacacatggtcaa--aaaagacacagttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7170676 42 - 13098629 gttgatggaggtggtgacacatggtcaa--aaaagacacagttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4130524 42 - 4483953 gttgatggaggtggtgacacatggtcaa--aaaagacacagttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24760686 42 + 33263144 gttgatcgaggtggtgacacatggtcaa--aaaagacacagttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14041486 40 - 14338769 gttgatggaggtggtgacacatggtcaa--aaaag--acagttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 980566 42 + 1946073 gttgatggaggtggtgacacatggtcaa--aaaagacacagttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2006998 42 - 2117846 actgacagaggtggtaatacatggtcat--aaaggacacaattt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8918962 42 - 16357246 attgacagaggtggtgatacatggtcat--aaaggacacaattt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1402131 34 - 1807191 attgacagaggtggtgatacatggtcAT--AAAGGA-------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 33028 42 - 704494 attgacggaggaggtgatacatggtcat--aaaggacacaattt i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36342803 31 - 42659167 ------------gttaacgtgtggtcaa-tcaaggacacatttt i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46149829 44 - 69331447 gttgatggaggtggtgatatgtggtcaaataaaggacatatttt i canFam3.chr10 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e proCoq1.NW_012136747v1 5137389 47 - 6317780 I e micMur3.chr7 5771411 4685 + 108171978 I a score=2884213.000000 s hg38.chr22_GL383582v2_alt 138516 247 + 162811 gaagtcagagccaacagaaattgctaac--------------ggatcagaagtggacatgagagTCATAACAACAATGATAAACAGCAGCagccaac----actagttaaacacaagccatgtgccagccactgctccatgtctttt-caggtgaaaattcattcaactgtcacaataatcccc----agagg----tacaagtgacaaccccactttattcaaatgaagacaacatggtagagagaggttgtgtagctgcccaaggcctcaGA---------------------- s panTro5.chr22 28918082 247 + 37823149 gaagtcagagccaacagaaattgctaac--------------ggatcagaagtggacatgagagTCATAACAACAATGATAAACAGCAGCagccaac----actagttaaacacaagccatgtgccagccactgctccatgtctttt-caggtgaaaattcattcaactgtcacaataatccca----agagg----tacaagtgacaaccccactttattcaaatgaagacaacatggtagagagaggttgtgtagctgcccaaggcctcaGA---------------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41192625 247 + 50109623 gaagtcagacccaacagaaattgctaac--------------ggatcagaagtggacatgagagTCATAACAACAATGATAAACAGCAGCagccaac----actagttaaacacaagccatgtgccagccactgctccatgtctttt-caggtgaaaattcattcaactgtcacaataatccca----agagg----tacaagtgacaaccccactttattcaaatgaagacaacatggtagagagaggttgtgtagctgcccaaggcctcaGA---------------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3215478 246 + 4464012 gaagtcagagccaacagaaattgctaac--------------ggatcagaagtggacatgagagCCATAACAAC-ATGATAAACAGCAGCagccaac----actagttaaacacaagccatgtgccagccactgctccatgtctttt-caggtgaaaattcattcaactgtcacaataatccca----agagg----tacaagtgacaaccccactttattcaaatgaagacaacatggtagagagaggttgtgtagctgcccaaggcctcaGA---------------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106707948 244 - 115148730 gaagttagagccaacagaaattgctaat--------------ggatcagaagtggacatgagagCCATAACAACAATGATAAACAGCAGCagccaac----actagttaaacacaagccatgtgccagccactgctccatgtctttt-caggtgaaaattcattcaactgtcacaataatccca----agagg----tacaagtcacaacc---ctttattcaaatgaagacaacatggtagagagaggttgtgtagctgcccaaggCGTCAGA---------------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84327384 244 + 92844088 gaagttagagccaacaaaaattgctaat--------------gaatcagaagtggacatgagagCCAT---CACAATGATAAACATCAGCagccaac----actagttaaacacaagccatgtgccaggaactgctccatgtctttt-caggtgaaaagtcattcaactgtcacaataatccca----agagg----tacaggtgacaacaccactttattcaaatgaagacaacatggtagagacaggtagtgtagctgcccaaggcctcaGA---------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87673748 244 - 96509753 gaagttagagccaacaaaaattgctaat--------------gaatcagaagtggacatgagagCCAT---CACAATGATAAACATCAGCagccaac----actagttaaacacaagccatgtgccaggaactgctccatgtctttt-caggtgaaaagtcattcaactgtcacaataatccca----agagg----tacaggtgacaacaccactttattcaaatgaagacaacatggtagagacaggtagtgtagctgcccaaggcctcaGA---------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7170718 244 - 13098629 gaagttagagccaacaaaaattgctaat--------------gaatcagaagtggacatgagagCCAT---CACAATGATAAACATCAGCagccaac----actagttaaacacaagccatgtgccaggaactgctccatgtctttt-caggtgaaaagtcattcaactgtcacaataatccca----agagg----tacaggtgacaacaccactttattcaaatgaagacaacatggtagagacaggtagtgtagctgcccaaggcctcaGA---------------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4130566 241 - 4483953 gaagttaaagccaacaaaaattgctaat--------------gaatcagaagtggacatgagagCCAT---CACAATGATAAACATCAGCagccaac----actagttaaacacaagccatgtgccaggaactgctccatgtctttt-caggtgaaaagtcattcaactgtcacaataatccca----agagg----tacaggtgacaa---cactttattcaaatgaagacaacatggtagagacaggtagtgtagctgcccaaggcctcaGA---------------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24760728 244 + 33263144 gaagttagagccaacaaaaattgctaat--------------gaatcagaagtggacatgagagCCAT---CACAATGATAAACAGCAGCagccaac----actagttaaacacaagccatgtgccaggaactgctccatgtctttt-caggtgaaaagtcattcaactgtcacaataatccca----agagg----tacaggtgacaacaccactttattcaaatgaagacaacatggtagagacaggtagtgtagctgcccaaggcctcaGA---------------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14041526 244 - 14338769 gaagttagagccgacaaaaattgctaat--------------gaatcagaagtggacatgagagCCAT---CACAATGATAAACATCAGCagccaac----actagttaaacacaagccatgtgccaggaactgctccatgtctttt-caggtgaaaagtcattcaactgtcacaataatccca----agagg----tacacgtgacaacaccactttattcaaatgaagacaacatggtagagacaggtagtgtagctgcccaaggcctcaGA---------------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 980608 247 + 1946073 gaagttagagccaacaaaaattgctaat--------------gaatcagaagtggacatgagagCCATAACAACAATGATAAACAGCAGCagccaac----actagttaaacacaagccatgtgccaggaaccgctccatgtctttt-cagatgaaaactcattcaactgtcacaataatccca----agagg----tacaggtgacaaccccactttattcaaatgaagacaacatggtagagacaggtagtatagctgcccaaggcctcaGA---------------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2007040 247 - 2117846 gaagtcagagaaaacagaaattgctaat--------------agacgagaggtggacatgagagCCACAATAACAATGATAAACAGCAGCagccaac----actagttaaacacaagccctgtgccagccactgctccatgtctttt-caggtgaaaattcattgaactgtcacaatcattcta----agagg----tacagctgacaaccccactttattcaaataaagacaacatggtagagagaggtttagtagctgcccaaggcctcaGG---------------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8919004 247 - 16357246 gaagtcagagcaaacagaaattgctaac--------------ggaccagaagtggacatgagagCCACAATAACAATGATAAACAGCAGCAGCCAAT----GCTAGTTAAATACAAGCCCtgtgccagccactgctccacgtctttt-caggtgaaaattcattcaactgtcacaatcattcta----agagg----tacagctgacaacctcactttattcaaatgaagacaacatggtagagagaggtttaatagctgcccaaggtctcaGG---------------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1402165 196 - 1807191 -----------------------------------------------------------------CACAGTAACAATGATAAACAGCAGCAGCCAAT----GCTAGTTAAACACAAGCCCtgtgccagccactgctccacgtctttt-caggtaaaaattcattcaactgtcacaatcattcta----agatg----tacagctgacaaccccactttattcaaatgaagacaacatggtagagagaggtttagtagctgcctaaggcctcaGG---------------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 33070 245 - 704494 gaagtcagagcaaat--aaattgctaac--------------ggacctgaagtggacatgagagCCACAATAACAATGATAAACAGCAGCagccaac----actagttaaacacaagccctgtgccagccactgctccatgtctttt-caggtgaaaattcattcaacggtcacaatcattcta----agagg----tacagctgacaaccccactctattcaaacgaagacaacatggtagagaaaggcttagtagctgcccaaggcctcaGG---------------------- i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5137436 256 - 6317780 gaagttaaagccaacataaattgctaat--------------ggatcagaagtggatgtgaTGGACACAAAAATTATGACAAACAGTAGCAGTCAACCCTAACTAGCtgagcaccagccacgtgccagtcaccactccatgtctgttactggtagaaattcattcaatcttcacagtaatccca----tgaggtagacagagttgacaactccactttattaaaatggagacaatgaggcagagagcagtttagtaattgtccaaggcctcaaa---------------------- i proCoq1.NW_012136747v1 I 47 I 100 s otoGar3.GL873526 36342834 270 - 42659167 gcagtgagaaccagtgtgaactgctAGTCAGGGGCAGATCAAAGATCAGAAGTAGACACGAGGGACACAAAAACAGTAACAAACAGCAGCAGCCAACACTAACTAGCTGAGTACCGGCCACATGCCAGTTACCCTCCACTGTCTGttacaggtggaaattcatttggtattcacagtactccca----tgagggagatacagctgataacccaactttattaaaatggagacaatgaagcagagagcaattgagttgctgcccaaggcctcaaa---------------------- i otoGar3.GL873526 C 0 I 13 s canFam3.chr10 46149873 274 - 69331447 gaagttggagccaaaggaaattgctaat--------------ggatcagcagtggatgtgagggaCACAACAATGAGGCCAAACAGCAGCagccaac----actagctgaacaccagccacctgccagccactgttctacatcctctacaggtaaaaatccagtcaatcttcacaatggtcccaccaggaagg----tacagccaacaactccactttattcaaatgaagataatgaggcagggagaggtttagtaaatgcctaaggcctccaagcttgtcatacagcagcctggg i canFam3.chr10 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e micMur3.chr7 5771411 4685 + 108171978 I a score=930294.000000 s hg38.chr22_GL383582v2_alt 138763 89 + 162811 TCTGAGCTTAGGCAGTGA-CTGGGGAGCTTGTACT-CCATTCACCATCCCTTACAGAACAACTGCAAACACTG-CACCATTtgtgaagagga s panTro5.chr22 28918329 88 + 37823149 TCTGAGCTTAGGCAGTGA-CTGGGGAGCTTGTACT-CCAT-CACCATCCCTTACAGAACAACTGCAAACACTG-CACCATTtgtgaagagga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41192872 88 + 50109623 TCTGAGGTTAGGCAGTGA-CTGGGGAGCGTGTACT-CCAT-CACCATCCCTTACAGAACAACTGCAAACACTG-CACCATTtgtgaagagga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3215724 88 + 4464012 TCTGAGCTTAGGCAGTGA-CTGGGGAGCTTGTACT-CCAT-CACCATCCCTTACAGAACAACTGCAAACATTG-CACCATTtgtgaagagga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106708192 89 - 115148730 TCTGAGCTTAAGCAGTGA-CTGGGGAGCTTGTACTCCCAT-CACCATTCCTTACAgaacaactgcaaacatgg-caccatttatgaagagga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84327628 85 + 92844088 TCTGAGCTTAGGCAGTGG-CTGGGCAGCTTGTACT-TCAT-CACCATCCCTTACAG---AACTGCAAACATGG-CACCGTTTATGAAGAGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87673992 85 - 96509753 TCTGAGCTTAGGCAGTGG-CTGGGCAGCTTGTACT-TCAT-CACCATCCCTTACAG---AACTGCAAACATGG-CACCGTTTATGAAGAGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7170962 85 - 13098629 TCTGAGCTTAGGCAGTGG-CTGGGCAGCTTGTACT-TCAT-CAACATCCCTTACAG---AACTGCAAACATGG-CACCGTTTATGAAGAGGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4130807 85 - 4483953 TCTGAGCTTAGGCAGTGG-CTGGGCAGCTTGTACT-TCAT-CACCATCCCTTACAG---AACTGCAAACATGG-CACCGTTTATGAAGAGGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24760972 88 + 33263144 TCTGAGCTTAGGCAGTGG-CTGGGCAGCTTGTACT-TCAT-CACCATCCCTTACAGAACAACTGCAAACATGG-CACCGTTTATGAAGAGGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14041770 85 - 14338769 TCTGAGCTTAGGCAGTGG-CTGGGCAGCTTGTACT-TCAT-CACCATCCCTTACAG---AACTGCAAACATGG-CACCGTTTATGAAGAGGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 980855 88 + 1946073 TCTGAGCTTAGGCAGTGG-CTGGGGAGCTTGTACT-TCAT-CACCATCCCTTACAgaacaactgcaaacatgg-caccatttatgaagagga i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2007287 88 - 2117846 TCTGAGCTTAGGCAGCGG-CTTGGGAGCTTGTACT-CCAC-CAGCATCCCTTACAGAGTAACTGCAAACATGG-CACCATTTATGAAGAGGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8919251 88 - 16357246 TCTGAGCTTAGGCATCGG-TTTGGGAGCTTGTACT-CCAC-CACCATCCCTTACAgagtaactggaaacatgg-caccatttatgaagagga i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1402361 88 - 1807191 TCTGAGCTTGGGCAGCGG-CTTGGGAGCTTGTACT-CCAC-CACCATCCCTTACAGAGTAACTGCGAACATGG-CACCATTTATGAAGAGGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 33315 88 - 704494 TCTGAGCTTAGGCAGCGG-CTTGGGAGCTTGTACT-CCAC-CACCACCCCTTACAGAGTAACTGCAAACACGG-CACCATTTATGAAGAGGA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36343117 88 - 42659167 tctgaggccaggcagGGGTCTTAGGAGCTCACACT-CTAG-CACCATCCCTTATGGAGCAACTGAGAACAGGGCCACCACCTGTGAAGAG-- i otoGar3.GL873526 I 13 C 0 s canFam3.chr10 46150147 88 - 69331447 tctgagcccaagcagtgggctccggagccagtact-ccag-tactgtcctccactgagccactgggaaccgag-caccgtgtatgagaggg- i canFam3.chr10 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e proCoq1.NW_012136747v1 5137692 100 - 6317780 I e micMur3.chr7 5771411 4685 + 108171978 I a score=83083.000000 s hg38.chr22_GL383582v2_alt 138852 10 + 162811 acg-aggc---tgg------------- s panTro5.chr22 28918417 10 + 37823149 acg-aggc---tgg------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41192960 10 + 50109623 aca-aggc---tgg------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3215812 10 + 4464012 acg-aggc---tgg------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106708281 13 - 115148730 atg-aggctggtgg------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84327713 10 + 92844088 ATG-AGAC---TGG------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87674077 10 - 96509753 ATG-AGAC---TGG------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7171047 10 - 13098629 ATG-AGAC---TGG------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4130892 10 - 4483953 ATG-AGAC---TGG------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24761060 10 + 33263144 ATG-AAAC---TGG------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14041855 10 - 14338769 ATG-AGAC---TGG------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 980943 11 + 1946073 atgaagac---tgg------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2007375 10 - 2117846 ATG-AGGC---TGG------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8919339 10 - 16357246 atg-aggc---tgg------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1402449 10 - 1807191 ATG-AGGC---TAG------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 33403 10 - 704494 ATG-AGGC---TGG------------- i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5137792 10 - 6317780 ATG-ACGA---TGG------------- i proCoq1.NW_012136747v1 I 100 C 0 s otoGar3.GL873526 36343205 10 - 42659167 ATG-ACAA---CAG------------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46150235 23 - 69331447 atg-aggt---caggaatgggacaggt i canFam3.chr10 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 128149 6679 + 1056298 I e micMur3.chr7 5771411 4685 + 108171978 I a score=1189539.000000 s hg38.chr22_GL383582v2_alt 138862 103 + 162811 taaagggaatcaagagtgctttg-c-caaacatg-gcaacac-gcgattcccattgcacatccacatggaaacagcaggg----agacagcca-----atgcgacaggatctccaa s panTro5.chr22 28918427 103 + 37823149 taaagggaatcaagagtgctttg-c-caaacatg-gcaacac-gcgattcccattgcacatccacatggaaacagcaggg----agacagcca-----atgcgacaggatctccaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41192970 103 + 50109623 taaagggaatcaagagtgctttg-c-caaacatg-gcaacac-gcgattcccattgcacatccacatggaaacagcaggg----agacagcca-----atgcgacaggatctccaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3215822 103 + 4464012 taaagggaatcaagagtgctttg-c-caaacatg-gcaacac-gcgattcccattgcacatccacatggaaacagcaggg----agacagcca-----atgcgacaggatctccaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106708294 104 - 115148730 taaagggaattaagagtgctttgcc-caaacagg-gcaacat-gcgattcccactgcacgtccacatggaaacagcaggg----agacagcta-----atgcgacaggatctccaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84327723 103 + 92844088 TAACgggaatcaagagtgctttg-c-caaacatg-gcaacac-gcaattcccattgcacgtccacatggaaatggcaggg----agacagcta-----atgcgacgggatctccga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87674087 103 - 96509753 TAACgggaatcaagagtgctttg-c-caaacatg-gcaacac-gcaattcccattgcacgtccacatggaaatggcaggg----agacagcta-----atgcgacaggatctccga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7171057 103 - 13098629 TAACgggaatcaagagtgctttg-c-caaacatg-gcaacac-gcaattcccattgcacgtccacatggaaatggcaggg----agacagcta-----atgcgacaggatctccga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4130902 102 - 4483953 TAATgggaatcaagagtgctttg-c-c-aacatg-gcaacac-gcaattcccattgcacgtccacatggaaatggcaggg----agacagcta-----atgcgacaggatctccga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24761070 103 + 33263144 Tagcgggaatcaagagtgctttg-c-caaacatg-gcaacac-gcaattcccattgcacgtccacatggaaatggcaggg----agacagcta-----atgtgacaggatctccga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14041865 102 - 14338769 TAACgggaatcaagagtgctttg-c-c-aacatg-gcaacac-gcaattcccattgcacgtccacatggaaatggcaggg----agacagcta-----atgcgacaggatctccga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 980954 103 + 1946073 taatgggaatcaagagtgctttg-t-caaacatg-gcaacac-acgattcccattgcacgtccacatggaaatggcaggg----agacagcta-----atgcgacaggatctccga i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2007385 107 - 2117846 TAAAGGGAATCAAGAGTGCTTTG-C-CAAACACA-GCAACAC-GCAATTTCCACTGCacgtccacatggtaacggcagggagacagacagcta-----gtgtgactagttcaccaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8919349 103 - 16357246 taaagggaatcaagagtgctttg-c-caaacaca-gcaacac-gcaatttccactgcacgtccacatggaaatggcaggg----agagagcta-----gtgtgactagatcaccaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1402459 103 - 1807191 TAAAGGGAATCAAGAGTGCTTTG-C-CAAACACG-GCAACAC-GCAATTTCCACTGCacgcccacatggaaacggcagag----agacagcta-----gtgtgactggatcaccaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 33413 103 - 704494 TAAAGGGAATCAAGAGTGCTTTG-C-CAAACACG-GCAACAC-GCAATTTCCACTGCacgtccacatggtaacggcagga----agacagcta-----gtgtgactggatcaccaa i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5137802 104 - 6317780 TAAAGGGAATGGAGAGTgttttg-c-cagacatgctaaatct-gagatgcctactgcacatccaggtggagacgtcaggt----agacagcta-----gcgtgactggatgtcagg i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36343215 94 - 42659167 GAAGGGGAATGGAGAGCGCTTTG-Cttagacatgctccatct-gagaggcccactagacatccaagtagagatgt------------cagcta-----gcatgactggatctg--- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46150258 103 - 69331447 tgaagggaatgaggagtgctctg-c-tggacagg-ttaactctgagattcctagcggacacccaagtggagatgtcaggc----agatagctg-----gcatgtctggttctcaa- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 134828 109 + 1056298 taaaaaAAAAAAAAAGTGACATG-C-TGGACCCA-GGAGCttggagattcctactggacatccaagtggaaatgccaggt----aaacagctggcaacatgtttcaaagtctcagg i dasNov3.JH570235 I 6679 C 0 e mm10.chr15 82862696 10835 + 104043685 I e micMur3.chr7 5771411 4685 + 108171978 I a score=4226922.000000 s hg38.chr22_GL383582v2_alt 138965 295 + 162811 ggaaaggtggag-tagagataaaaatgggaaggtcattagcacagaggtagtatttaaagccaacagagtagatgagatcacccagagCA-gtttttcaaactgcaggctgtgaaatcaatttagtgggtcatgaacagcactt--aaaaaa------aaaat---gaaatagagcagaatg-gaaaataacagag-tcc-acggctc--------atgaagtataagaaccgttttgtgaaacttttgttt-ctgt----t----gtgtctgtgtgCACAAGACGGTGTA--GTGTGTTTGTACTTGTCCGGCATTTGGTATGGCTGAA s panTro5.chr22 28918530 294 + 37823149 ggaaaggtgggg-tagagataaaaatgggaaggtcattagcacagaggtagtatttaaagccaacagagtagatgagatcacccagagCA-gtttttcaaacggcaggctgtgaaatcaatttagtgggtcatgaacagcactt--aaaaaa------aaa-t---gaaatagagcagaatg-gaaaataacagag-tcc-acggctc--------atgaagtataagaaccgttttgtgaaacttttgttt-ctgt----t----gtgtctgtgtgCACAAGACGGTGCA--GTGTGTTTGTACTTGTCCGGCATTTGGTATGGCTGAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41193073 294 + 50109623 ggaaaggtgggg-tagagataaaaatgggaaggtcattagcacagaggtagtatttaaagccaacagagtagatgagatcacccagagCA-gtttttcaaactgcaggctgtgaaatcaatttagtgggtcatgaacagcactt--aaaaaa------aaa-t---gaaatagagcagaatg-gaaaataacagag-tcc-acggctc--------ataaagtataagaaccgttttgtgaaacttttgttt-ctgt----t----gtgtctgtgtgtaCAAGACGGTGTA--GTGTGTTTGTACTTGTCCGGCATTTGGTATGGCTGAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3215925 293 + 4464012 ggaaaggtgggg-tagagataaaaatgggaaggtcattagcacagaggtaatatttaaagccaacagagtagatgagatcacccagagCA-gtttttcaaactgcaggctgtgaaatcaatttagtgggtcatgaacagcactt--aaaaaa------aa--t---gaaatagagcagaatg-gaaaataacagag-tcc-acggctc--------atgaagtataagaaccgttttgtgaaacttttgttt-ctgt----t----gtgtctgtgtgCACAAGACGGTGTA--GTGTGTTTGTACTTGTCCAGCATTTGGTATGGCTGAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106708398 295 - 115148730 ggaaaggtgggg-tagagataaaaatgggaaggtcattagcacagaggtagtatttaaagccaacagagtagatgagatcacccagagCA-gtttttcaaactgcaggctgtgaaatcaatttagtgggtcatgaacagcactt--aaaaaa------aaa-t---gaaatagagcagaatg-gaaaataacagag-tcc-acggctc--------atgaagtataagaaccgttttgtgaaacttttttttcctgt----t----gtgtctgtgtgCACAAGACAGTGTA--GTGTGTTTGTACTTGTCCGGCATTTGGTATGGCTGAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84327826 292 + 92844088 ggaaaggtgggg-tagggataaaaacgggaaggtcattagcacagaggtagtacctaaagccaacag-gtagataagctcacccagagCA-gtttttcaaactgcaggctgtgaaatcaatttagtgggtcatgaatagcactt--aaaaaa----------t---gaaatagagcagaatg-gaaaataacagca-tcc-atggctc--------atgaagcataagaaccgttttgtgaaacttttgttt-ctgt----t----gtgtctgtgtgcataAGACAGTGTAGTGTGTGTTTGTACTTGGCTGGTATCTGGTATGGCTGAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87674190 292 - 96509753 ggaaaggtgggg-tagggataaaaacgggaaggtcattagcacagaggtagtacctaaagccaacag-gcagatgagctcacccagagCA-gtttttcaaactgcaggctgtgaaatcaatttagtgggtcatgaatagcactt--aaaaaa----------t---gaaatagagcagaatg-gaaaataacagca-tcc-atggctc--------atgaagcataagaaccgttttgtgaaacttttgttt-ctgt----t----gtgtctgtgtgcataAGACAGTGTAGTGTGTGTTTGTACTTGGCTGGTATCTGGTATGGCTGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7171160 292 - 13098629 ggaaaggtgggg-tagggataaaaacgggaaggtcattagcacagaggtagtacctaaagccaacag-gtagatgagctcacccagagCA-gtttttcaaactgcaggctgtgaaatcaatttagtgggtcatgaatagcactt--aaaaaa----------t---gaaatagagcagaatg-gaaaataacagca-tcc-atggctc--------atgaagcataagaaccgttttgggaaacttttgttt-ctgt----t----gtgtctgtgtgcataAGACAGTGTAGTGTGTGTTTGTACTTGGCTGGTATCTGGTATGGCTGAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131004 290 - 4483953 ggaaaggtgggg-tagggataaaaacgggaaggtcattagcacagaggtagtacttaaagccaacag-gtagatgagctcacccagagCA-gtttttcaaactgcaggctgtgaaatcaatttagtgggtcatgaatagcactt--aaaaaa----------t---gaaatagagcagaatg-gaaaataacagcg-tcc-atggctc--------atgaagcataagaactgttttgtgaaacttttgttt-ctgt----t----gtgtctgtgtgcataAGACAGTGTA--GTGTGTTTGTACTTGGCTGGTATCTGGTATGCCTGAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24761173 290 + 33263144 ggaaaggtgggg-tagggataaaaacgggaaggtcattagcacagaggtagtacttaaagccaacag-gtagatgagctcaccCAAAGCA-gtttttcaaactgcaggctgtgaaatcaatttagtgggtcatgaatagcactt--aaaaaa----------t---gaaatagagcagaatg-gaaaataacagcg-tcc-atggctc--------atgaagcataagaaccgttttgtgaaacttttgttt-ctgt----t----gtgtctgtgtgCACAAGACGGTGTA--GTGTGTTTGTACTTGGCTGGTATCTGGTATAGCTGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14041967 290 - 14338769 ggaaaggtgggg-tagggataaaaacgggaaggtcattagcacagaggtagtacttaaagccaacag-gtagatgagctcacccagagCA-gtttttcaaactgcaggctgtgaaatcaatttagtgggtcatgaatagcactt--aaaaaa----------t---gaaatagagcagaatg-gaaaataatagcg-tcc-atggctc--------atgaagcataagaactgttttgtgaaacttttgttt-ctgt----t----gtgtctgtgtgcataAGACAGTGTA--GTGTGTTTGTACTTGGCTGGTATCTGGTATGGCTGAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981057 293 + 1946073 ggaaacgtgggg-tagggataaaaacgggaaggtcattagcacagaggtagtacttaaagccaacagagtaaatgagctcacccagagCA-gtttttcaaactgcaggctgtgaaatcaatttagtgggtcatgaatagcacttaaaaaaaa----------t---gaaatagagcagaatg-gaaaataacagcg-tcc-atggctc--------atgaagcgtaagaaccgttttgtgaaacttttgttt-ctgt----t----gtgtctgtgtgCACAAGACGGTGTA--GGGTGTTTGTACTTGGCTTGTATCTGGTATGGCTGAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2007492 299 - 2117846 gcaaaggtgggg-tagagataaaaatgggaaggtcattagcacagaggtagtattttaagccaaaagagtagatgagatcacccagAACA-gtttttcaaactgcaggctgtgaaatcaatttagtgggtcaggaacagcactt-aaaaaaaataaataaa-t---aaaatagagcagaatg-gaaaataagag---tcc-atggctc--------atgaagtgtaagaactgttttgtgaaatttttgttt-ctgc----t----gtgtctgtgtgtgCAAGATGGCGTA--GTGTGTTTGTACTTGACTGGCATTTGGTATGGCTGAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8919452 305 - 16357246 gcaaaggtgggg-tagagataaaaatgggaaggtcattagctcagaggtaatattttaagtcaacagagtagatgagatcacccagAaga-gtttttcaaactgtaggctgtgaaatcaatttagtgggtcacgaacagcattt--aaaaagataaacaaa-t---aaaatagagcagaatg-aaaaataacagagtccc-atggctc--------atgaagtgtaagaactgttttgtgaaatttttgttt-ctgttgtgt----gtgtgtgtgtgtgCAAGATGGCATA--GTGTGTCTGTACTTGACTGGCATTTGGTATGGCTGGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1402562 296 - 1807191 gcaaaggtgggg-tagagataaaaatgggaaggtcattagtacagaggtagtattttaagccaacagagtagatgagatcacccagAACA-gtttttcaaactacaggctgtgaaatcaatttagtgggtcatgaa-agcactt--aaaaaaataaataaa-t---aaaaaagagcagaatg-gaaaataacagag-tcc-atggctc--------atgaagtgtaagaactgttgtgtgaaatttttgtttGTTGT----------TCTGCGTGTGCGCAAGATGGCGTA----GTGTTTGTACTTGACTGGCATTTGGTATGGCTGGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 33516 302 - 704494 gcaaaggtgggg-tagagataaaaatgggaaggtcattagcacagaggtagtattttaagtcaacagagtagatgagatgacccagAACA-gtttttcaaactgcaggctatgaaatcaatttagtgggtcacgaacagcactt--aaataaataaataaa-t---aaaatagagcagaatgaaaaaataacaagagtcc-atggctc--------atgaagtgtacgaactgttttgtgaaatttttgttt-ctgt----t----gtgtctgtctgtgCAAGATAGTGTA--GTGTGTTTGAACTTGACTGGCATTTGGTATGGCTGAC i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5776096 305 + 108171978 ggaaaggtggag-tggagataaaaaagggaaggtcattagcaaagagatagtatttaaagccagaagtgtaaacgagatcactcagagCA-Ctttttcaaactgcaggctatgaaatcaatttagtgggtcatgaacagcactt--aaaaaa--aaaaaaa-a---aagaaagagtaaaatg-gaaaataacagag-tcc-atggctcatagtaagatgaaatataagaactgttttacaaaatttttgttt-cagt----t----ttgtctgtgtgcatatgctggtgta--atgtgtTTGTACTAGGCTGGCATTT-GTATGGTTGAA i micMur3.chr7 I 4685 C 0 s proCoq1.NW_012136747v1 5137906 305 - 6317780 ggaaaggtgggg-tggagataaaaaagggaaggtcatcagcaaagagatagtatttaaagccaaaggaggaaataagatcactcagACCA-Ctttgtcaaactgcaggctatgaaatcaatttagtgggtcatgaatagcactt--aaaaaa--aaaaaaa-a---gaaatagagcagaatg-gaaaataacagag-tcc-atggctcatagtaagatgaaatataagaactgttttacaaaatttttgttt-cagt----t----gtgtctgtgtgcatatgCTGGTATA--ATGTGTTTGTACTAGGCTGGCACTA-GTATGGTTGAA i proCoq1.NW_012136747v1 C 0 I 50 s otoGar3.GL873526 36343309 309 - 42659167 ggaaaggtagag-tggagat-agaatgggaaggtcgttagcaaagagatagtatttaaagccaaaggagcagatgagatcaccCTGAGcagttttttcaaactgcaggctgtgaaatcaatttagtgggtcatgaacagcactt--aaaaaa--aaaaaaa-aaatgaaatagagcagaatg-gaaaataacaaag-tcc-atggctcatagtaagatgaaatataagaactgtttcatgaaattttcattt-cagt----t----gtgtctgtgtgcataCGCTGGTGTA--ATGTGTTTGTACTAGGCTAGCATTTGGTAGGGTAGAA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46150361 305 - 69331447 ggaaaggtggggatggagatataaatggtaaggtcaccagtacaaagatagtatttaaagccaaaggagtgggtgagatcatccagagCA-gtttttcaaactgaaggttgtgaaatcaatttagtgggtcatgaacagcactt--aaaaaa---aaaaaa-a---aaaatagaacagaatg-gaaaataacagag-tcctgtggccc------agagtaagatgaagaagtgtgttgtggaactcttgttt-cagctgtgt----gtgtCCATGTGCACAAGTGAGTGCA--GGGTGTGTATACCAGGTTGGCATTTGGTTTGGTAAAA i canFam3.chr10 C 0 I 28 s dasNov3.JH570235 134937 294 + 1056298 ggtagtggggga-aagaagtatcgattggaaggtcatcagcacagaggtagtatttaaagccacagaagtggatgagatcaccCACAACA--TGTTAAAATCTGCAgattgtaaaatcaatttagtgggtcatgaacagcactt--aaaaaa--------a-a---aaaatgaaacagaatc-gaaaat---agag-tgc-atcagtcacagtaagacaaagtgtaagacttgctttgtgaaacttttgttt-caTC----TGTGAGTGACTGTGTGT-CAAGTAAGTGAA-------TGTGACCTGGGCTAGCATTTGATATAGTCAAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I a score=52883.000000 s hg38.chr22_GL383582v2_alt 139260 5 + 162811 CAAAA s panTro5.chr22 28918824 5 + 37823149 AAAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41193367 5 + 50109623 AAAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216218 4 + 4464012 -AAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106708693 4 - 115148730 -AAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328118 4 + 92844088 -AAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87674482 4 - 96509753 -AAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7171452 4 - 13098629 -AAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131294 4 - 4483953 -AAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24761463 4 + 33263144 -AAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042257 4 - 14338769 -AAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981350 4 + 1946073 -AAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2007791 4 - 2117846 -AAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8919757 4 - 16357246 -AAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1402858 4 - 1807191 -AAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 33818 4 - 704494 -AAAA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5776401 4 + 108171978 -CAAA i micMur3.chr7 C 0 I 35 s otoGar3.GL873526 36343618 2 - 42659167 ---AA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46150694 5 - 69331447 AAAAA i canFam3.chr10 I 28 C 0 s dasNov3.JH570235 135231 4 + 1056298 -AAAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5138211 50 - 6317780 I a score=549820.000000 s hg38.chr22_GL383582v2_alt 139265 49 + 162811 AGATTTAAAAC---CA----CTGGTCTAGAGGCT--AACTTGGAGTgactgatccctg s panTro5.chr22 28918829 49 + 37823149 AGATTTAAAAC---CA----CTGGTCTAGAGGCT--AACTTGGAGTgactgatccctg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41193372 49 + 50109623 AGATTTAAAAC---CA----CTGGTCTAGAGGCT--AACTTGGAGTgactgatccctg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216222 49 + 4464012 AGATTTAAAAC---CA----CTGGTCTAGAGGTT--AACTTGGAGTgactgattcctg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106708697 49 - 115148730 AGATTTAAAAC---CA----CTCATCTAGAGGTT--AACTTGGAGTgactgatccctg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328122 49 + 92844088 AGATTTAAAAC---CA----CTGGTCTAGAGGTT--AACTTGGAGTgactgatccctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87674486 49 - 96509753 AGATTTAAAAC---CA----CTGGTCTAGAGGTT--AACTTGGAGTgactgatccctg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7171456 49 - 13098629 AGATTTAAAAC---CA----CTGGTCTAGAGGTT--AACTTGGAGTGACTGATCCCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131298 49 - 4483953 AGATTTAAAAC---CA----CTGGTCTAGAGGTT--AACTTGGAGTGACTGATCCCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24761467 49 + 33263144 AGATTTAAAAC---CA----CTGGTCTAGAGGTT--AACTTGGAGTGACTGATCCCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042261 49 - 14338769 AGATTTAAAAC---CA----CTGGTCTAGAGGTT--AACTTGGAGTGACTGATCCCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981354 49 + 1946073 AGATTTAAAAC---CA----CTGGTCTAGAGGTT--AACTTGGAGTgactgattcctg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2007795 49 - 2117846 AGATCTAAAAC---CA----TTGGTCCAGAGACT--AAGTTGGAGTAACTGATCCCTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8919761 49 - 16357246 ATATCTAAAAC---CA----CTGGTCCAGAGTCT--AAGTTGGAGTAactgatccctg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1402862 49 - 1807191 AGATCTAAAAT---CA----CTGGTCCagagact--aagttggagtaactgattcctg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 33822 49 - 704494 AGATCTAAAAC---CA----TTGATCCagagact--aagttggagtaactgatccctg i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36343620 51 - 42659167 AAGTTTAAAGT---TACAGGCTGGTCTAGGGATT--AAGTGTaag--actgaccccta i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46150699 50 - 69331447 AGGTTTAAGCCACACA----CAGGTTCAGGGATTCCATATAGGAG----CGATCTCTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 135235 47 + 1056298 ACTTTTAAAAC---AA----CTGGCTTAGGGAAT--AAAT--GCATAATTTATccctg i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5138211 50 - 6317780 I e micMur3.chr7 5776405 35 + 108171978 I a score=166.000000 s hg38.chr22_GL383582v2_alt 139314 1 + 162811 c s panTro5.chr22 28918878 1 + 37823149 c i panTro5.chr22 C 0 C 0 s panPan2.chr22 41193421 1 + 50109623 c i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216271 1 + 4464012 c i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106708746 1 - 115148730 c i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328171 1 + 92844088 a i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87674535 1 - 96509753 a i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7171505 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131347 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24761516 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042310 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981403 1 + 1946073 a i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2007844 1 - 2117846 A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8919810 1 - 16357246 a i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1402911 1 - 1807191 a i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 33871 1 - 704494 a i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5776440 1 + 108171978 a i micMur3.chr7 I 35 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 135282 0 + 1056298 C e canFam3.chr10 46150749 0 - 69331447 C e otoGar3.GL873526 36343671 0 - 42659167 C e proCoq1.NW_012136747v1 5138211 50 - 6317780 I a score=851648.000000 s hg38.chr22_GL383582v2_alt 139315 62 + 162811 aatcactctatcatttag--aaggtggagaagagg-aaaagaagccagaaaagg-agagt-----gaagaa s panTro5.chr22 28918879 62 + 37823149 aatcactctatcatttag--aaggtggagaagagg-aaaagaagccagaaaagg-agagt-----gaagaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41193422 62 + 50109623 aatcactctatcatttag--aaggtggagaagagg-aaaagaagccagaaaagg-agagt-----gaagaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216272 62 + 4464012 aatcactctatcatttag--aaggtggagaagagg-aaaagaagccagaaaagg-agagt-----gaagaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106708747 63 - 115148730 aatcactctaccatttag--aagacggagaagagg-aaaagaagccagaaaaggaagagt-----gaagaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328172 60 + 92844088 aatca--ctagcatttag--aagttggaaaagagg-aaaagaagccagaaaagg-agagt-----gaagaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87674536 60 - 96509753 aatca--ctagcatttag--aagttggaaaagagg-aaaagaagccagaaaagg-agagt-----gaagaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7171506 60 - 13098629 AATCA--CTAGCATTTAG--AAGTTGGAaaagagg-aaaagaagccagaaaagg-agagt-----gaagaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131348 62 - 4483953 AATCA--CTAGCATTTagaaaagaaggaaaagagg-aaaagaagccagaaaaga-agagt-----gaagaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24761517 60 + 33263144 AATCA--CTAGCATTTAG--AAGTTGGAaaagagg-aaaagaagccagaaaagg-agagt-----gaagaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042311 61 - 14338769 AATCA--CTAGCATTTAG--AAGTTGGAAAAGAGGAAAAAGAAGCCAGAAAAGG-AGAGT-----GAAGGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981404 62 + 1946073 aatcactctagcatttag--aagttggagaagagg-aaaagaagccagaaaagg-agagt-----gaagaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2007845 62 - 2117846 AATCACTCTAGCACTTAG--AAGTTAGGAAAAAGG-AAAATAAGCCAGAAAAGG-AGAGT-----AAAGAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8919811 62 - 16357246 aatcactctagcacttag--aatttgggaaaaagg-aaaagcagccagaaaagg-agagt-----aaagaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1402912 62 - 1807191 aatcactctagcacttag--aagttgggaaaaagg-aaaagaagccagaaaagg-agagt-----aaagaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 33872 62 - 704494 aatcactctagcacttag--aagttgggaaaaagg-aaaagaagccagaaaagg-agagt-----aaagaa i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5776441 62 + 108171978 aatcactccaacatttag--agattgggaaagagg-aaaagaagccagaaaatg-agaat-----gaagaa i micMur3.chr7 C 0 I 60 s proCoq1.NW_012136747v1 5138261 62 - 6317780 aatcacgccaacatttag--agattgggaaaaaag-aaaagaagccagaaaatg-agaat-----gaagaa i proCoq1.NW_012136747v1 I 50 I 7 s otoGar3.GL873526 36343671 58 - 42659167 aatcactccaaca-tcag--aggttgggaaagatg-ga---aagccaaaaaatg-agagt-----gaagtt i otoGar3.GL873526 C 0 I 2 s canFam3.chr10 46150749 57 - 69331447 AATCACTCCAGCATTTAG--AGATTGCAAAAGAGG-AAAAGCAGCTAGAGAAGG-AG---------AAGA- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 135282 67 + 1056298 aatccctccaacacttag--aggttgggagagagg-aaaaggaggcagaaaagg-agagtggaaggaagaa i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I a score=587582.000000 s hg38.chr22_GL383582v2_alt 139377 65 + 162811 gt-----------aggaaggaggaaaGGCAGT----GGGGGGGTC------CCAAGCAAATGTGACATGTTGGACATCCAACGTGC s panTro5.chr22 28918941 65 + 37823149 gt-----------aggaaggaggaaaGGCAGT----GGGGGGGTC------CCAAGCAAATGTGACATGTTGGACATCCAACGTGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41193484 69 + 50109623 gt-----------aggaaggaggaaaggcagtgggggggggggtc------ccaagcaaatgtgacatgttggacatccaaCGTGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216334 65 + 4464012 at-----------aggaaggaggaaaGGCAGT----GGGGGGGTC------CCAAGCAAACGTGACATGTTGGACATCCAACGTGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106708810 63 - 115148730 ac-----------aggaaggaggaaaggcagt-----ggggggtc------ccaagcaaatgtgaCATGTTGGACATCCAACGTG- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328232 64 + 92844088 ac-----------aggaaggaggaaaggcagt-----gaggagcc------ccaagcaaatgtgacatgttggaCATTCAACGTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87674596 64 - 96509753 ac-----------aggaaggaggaaaggcagt-----gaggagcc------ccaagcaaatgtgacatgttggaCATTCAACGTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7171566 64 - 13098629 ac-----------aggaaggaggaaagGCAGT-----GGGGAGCC------CCAAGCAAATGTGACATGTTGGACATTCAACGTGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131410 64 - 4483953 ac-----------aggaaggaggaaagGCAGT-----GGGGAGCC------CCAAGCAAATGTGACATGTTGGACATTCAACGTGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24761577 64 + 33263144 ac-----------aggaaggaggaaagGCAGC-----GGGGAGCC------CCAAGCAAATGTGACATGTTGGACATTCAACGTGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042372 64 - 14338769 AC-----------AGGAAGGAGGAAAGGCAGT-----GGGGAGCC------CCAAGCAAATGTGACATGTTGGACATTCAACGTGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981466 64 + 1946073 ac-----------aggaaggaggaaaggcagt-----gcggagcc------ccaagcaaatgtgaCATGTTGGACATCCAACGTGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2007907 67 - 2117846 ATTGC-------GAGGAAGGAGGAAAGGCAGT-----GTGGAG-C------CCAAGCAAATGTGACATGTTGGACATCTGACGTGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8919873 67 - 16357246 actgc-------gaggaaggaggaaaggcagt-----gtggag-c------ccGAGCAAATGTGACATGTTGGACATCTGATGTGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1402974 67 - 1807191 actgc-------gaggaaggaggaaaggcagt-----gtggag-c------ccaagcaaatgtgaCACGTTGGACATCTGACATGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 33934 67 - 704494 actgc-------gagaaaggaggaaaggcagt-----gtggag-c------ccaagcaaatgtgaCATGTTGGACATGTGACGTGC i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5138330 54 - 6317780 ----t-------gaggaaggaagaaaggcagt-----atggggccttagagccgagtgaaTGTGACATGC---------------- i proCoq1.NW_012136747v1 I 7 C 0 s otoGar3.GL873526 36343731 54 - 42659167 ----t-------gaggaaggaggaaaagtagt-----gtggggccttagagctgcgtgaaTGTGACACGC---------------- i otoGar3.GL873526 I 2 C 0 s canFam3.chr10 46150806 43 - 69331447 GC-----------AGTTAAGGGGAAAAGTAGC-----TAGTAGAG------ATGAGAGAAAGGGC--------------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 135349 78 + 1056298 ---gcagcaagagaggaaggagagaaggcaag-----tggggtccctagtgccgaatgaGTGTGATCTGCTGGACAGCAGACAGGC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e micMur3.chr7 5776503 60 + 108171978 I a score=847667.000000 s hg38.chr22_GL383582v2_alt 139442 75 + 162811 TGGTGAGAGTCATGCAGTATGATCACAGCAGAGATGTCCATAATTA-----TGGAATGGCAAGGTAAGCACACA--GCTGTG s panTro5.chr22 28919006 75 + 37823149 TGGTGAGAGTCATGCAGTATGATCACAGCAGAGATGTCCATAATTA-----TGGAATGGCAAGGTAAGCACACA--GCTGTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41193553 75 + 50109623 TGGTGAGAGTCATGCAGTATGATCACAGCAGAGATGTCCATAATTA-----TGGAATGGCAAGGTAAGCACACA--GCTGTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216399 75 + 4464012 TGGTGAGAGTCATGCAGTATGATCACAGCAGAGATGTCCATAATTA-----TGGAATGGCAAGGTAAGCACACA--GCTGTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106708873 71 - 115148730 ----GTGAGTCATGCAGTATGACCACAACAGAGATGTCCAAAATTA-----TGGAATGGCAAGGTAAGCACACA--GCTGTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328296 69 + 92844088 TAGT--GAGTCATGCAGTATG---ACAACAGAGATGTCCATAATTA-----TGGAATGGCAAGGTAAGCACACA--GCAGT- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87674660 70 - 96509753 TAGT--GAGTCATGCAGTATG---ACAACAGAGATGTCCATAATTA-----TGGAATGGCAAGGTAAGCACACA--GCAGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7171630 70 - 13098629 TAGT--GAGTCATGCAGTATG---ACAACAGAGATGTCCATAATTA-----TGGAATGGCAAGGTAAGCACACA--GCAGTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131474 70 - 4483953 TAGT--GAGTCATGCAGTATG---ACAACAGAGATGTCCATAATTA-----TGGAATGGCAAGGTAAGCACACA--GCAGTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24761641 70 + 33263144 TAGT--GAGTCATGCAGTATG---ACAACAGAGATGTCCATAATTA-----TGGAATCGCAAGGTAAGCACACA--GCAGTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042436 70 - 14338769 TAGT--GAGTCATGCAGTATG---ACAACAGAGATGTCCATAATTA-----TGGAATGGCAAGGTAAGCACACA--GCAGTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981530 70 + 1946073 TGGT--GAGTCATGCAGTATG---ACAACAGAGATGTCCATAATTA-----TGGAATGGCAAGGTAAGCACACA--GCAGTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2007974 75 - 2117846 TGACGAGAGTCATGCAGTATGGCCACAAAAGAGATGTTCGTAATTA-----TGTAATGGCAAGGTAAGCACACA--GCTGTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8919940 75 - 16357246 TGGCGAGAGTCATGCAGTATGGCCACAAAAGAGATGTCCATAATTA-----TGGAATGGCAAGGTAAACACACA--GCTGTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403041 73 - 1807191 TGGC--GAGTCATGCAGTATGGCCACAAAAGAGATGTCCATAATTA-----TGGAATGGCAAGGTAAGCACACA--GCTGTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34001 75 - 704494 TGGCGAGAGTCATGCAGTATGGCCACAAAAGAGATGTCCATAATTA-----TGGAATGACAAGGTAAGCACACA--GCTGTG i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5776563 69 + 108171978 TGGTGAGAGTCATGCAGCATGACCACAAGAGAGCTGTACGTAATTA-----TGGGATGGC-----AAGCACATA--GCT-TC i micMur3.chr7 I 60 C 0 s proCoq1.NW_012136747v1 5138384 69 - 6317780 TGGTGAGAGTCATGCAGCATGACCACAAGAGAGCTGTACGTAATTA-----TGGGATGGC-----AAGCACACA--GCT-TG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36343785 75 - 42659167 TGGTGAGAATCATGCAGTATGACCACAAGAGAGCTGTACGTAATTA-----TGGAATGGCAAGGTAAGCACACA--GCTGTG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46150849 79 - 69331447 TGGGGAGGGTCATGTGGTGAT---CCCAAACAGGTGTACAGAAGCAACTCTGGGACCAGGGAGGTAAACACACACTGCTATG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 135427 15 + 1056298 --------------------------------------------------------TGGGGAGA---------A--GCTGTG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I a score=1750639.000000 s hg38.chr22_GL383582v2_alt 139517 132 + 162811 GGAGCAGAGGGGC-------------------ACCTAACCTGTTTAA---------AC-TTAGCACAGAATAAAAAAGGGAAGGAGAGAGGTGATATTAGGATTTTATTTGAGATC-TAAGTTTAAGGG---AACGGCAGGATATCCAGTCTGTAACTTCCA-TAA s panTro5.chr22 28919081 132 + 37823149 GGAGCAGAGGGGC-------------------AAGTAACCTGTTTAA---------AC-TTAGCACAGAATAAAAAAGGGAAGGAGAGAGGTGATATTAGGATTTTATTTGAGATC-TAAGTTTAAGGG---AACGGCAGGATATCCAGTCTGTAACTTCCA-TAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41193628 132 + 50109623 GGAGCAGAGGGGC-------------------AAGTAACCTGTTTAA---------AC-TTAGCACAGAATTAAAAAGGGAAGGAGAGAGGTGATATTAGGATTTTATTTGAGATC-TCAGTTTAAGGG---AACGGCAGGATATCCAGTCTGTAACTTCCA-TAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216474 132 + 4464012 GGAGCAGAGGGGC-------------------AAGTAACCTGTTTAA---------AC-TCAGCACAGAATAAAAAAAGGAAGGAGAGAGGTGATATTAGGATTTTATTTGAGATC-TAAGTTTAAGGC---AACGGCAGGATATCCAGTCTGTAACTTCCA-TAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106708944 132 - 115148730 GGAGCAGAGGGGC-------------------AGGTAACCTGTTTAA---------AC-TTAGCACAGAATAAACAAGGGAAGGAGAGAGGTGATACTAGGATTTTATTTGAGATC-TAAGTTTAAAGG---AACGGCAGGATATCCAGTCTGTAACTTCCA-TAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328365 129 + 92844088 GGAGCAGAGGGGT-------------------GAGTGACCTGTTTAA---------AC-TTAGCGCAGAATAAAAAAGGGAAGGAGAGAGGTGATATTAGGAT----TTTGAGATC-TAAGTTTAAGGG---AACAGCAGGATATCCAGTCTGTAACTGCCATTAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87674730 129 - 96509753 GGAGCAGAGGGGT-------------------GAGTGACCTGTTTAA---------AC-TTAGCGCAGAATAAAAAAGGGAAGGAGAGAGGTGATATTAGGAT----TTTGAGATC-TAAGTTTAAGGG---AACAGCAGGATATCCAGTCTGTAACTGCCATTAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7171700 128 - 13098629 GGAGCAGAGGGGT-------------------GAGTGACCTGTTTAA---------AC-TTAGCGCAGAATAAAAAAGGGAAGGAGAGAGGTGATATTAGGAT----TTTGAGATC-TAAGTTTAAGGA---AACAGCAGGATATCCAGTCTGTAACTGCCA-TAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131544 128 - 4483953 GGAGCAGAGGGGT-------------------GAGTGACCTGTTTAA---------AC-TTAGCGCAGAATAAAAAAGGGAAGGAGAGAGGTGATATTAGGAT----TTTGAGATC-TAAGTTTAAGGG---AACAGCAGGATATCCAGTCTGTAACTGCCA-TAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24761711 132 + 33263144 GGAGCAGAGGGGT-------------------GAGTGACCTGTTTAA---------AC-TTAGCACAGAATAAAAAAGGGAAGGAGAGAGGTGATATTAGGATTTTATTTGAGATC-TAAGTTTAAGGG---AATAGCAGGATATCCAGTCTGTAACTGCTA-TAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042506 128 - 14338769 GGAGCAGAGGGGT-------------------GAGTGACCTGTTTAA---------AC-TTAGCGCAGAATAAAAAAGGGAAGGAGAGAGGTGATATTAGGAT----TTTGAGATC-TAAGTTTAAGGG---AACAGCAGGATATCCAGTCTGTAACTGCCA-TAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981600 133 + 1946073 GAAGCAGAGGGGT-------------------GAGTGACCTGTTTAA---------ACATTAGCACAGAATAAAAAAGGGAAGGAGAGAGGTGATATTAGGATTTTATTTGAGATC-TAAGTTTAAGGG---AACAGCAGGATATCCAGTCTGTAACTTCCA-TAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008049 131 - 2117846 GGAGCATGGGGGC-------------------AAGTGACCTGTTTAA---------GC-TTAGCACAGAATAAAAAAGGGAAGAAGAAAGGTGATATTAGGAT----TTTGAGATC-TAGGTTTAAGGGAACAACAGCAGGATATCCAGTCTGTAACTTCCA-TAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920015 128 - 16357246 GGAGCAGAGGGGC-------------------AAGTGACATGTTTAA---------GC-TTAGCACAGAATAAAAAAGGGAGGGAGAAAGGTGATATTAGGAT----TTCGAGATC-TAGGTTTAAGGG---AACAGCAGGATATCCAGTCTGTAACTTCCA-TAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403114 128 - 1807191 GGAGCAGAGGGGC-------------------AAGTGACCTGTTTAA---------GC-TTAGCAGAGAATAAAAAAGGGAGGGAGAAAGGTGATATTAGGAT----TTCGAGATC-TAGGTTTAAGGG---AACAGCAGGATATCCAGTCTGTAACTTCCA-TAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34076 128 - 704494 GGAGCAGAGGGGC-------------------AAGTGACCTGTTTAA---------GC-TTAGCACAGAATAAAAAAGAGAGGGAGAAAGGTGATACTAGGAT----TTCGAGATC-TAGGTTTAAGGG---AACAGCAGCATATCCAGTCTGTAACTTCCA-TAA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5776632 132 + 108171978 AGAGCAGTGGGGA-------------------GGGTGACCTGTTTAA---------AT-TGAGCACAGAATGAAAAGGAGAAGGAGAAAGCTGAGATTAGGATTTTAATTTAGACC-TAAGTTTGAGGG---GGCAGCAGAATATCCTGTCTGTAACTTACA-TAA i micMur3.chr7 C 0 I 162 s proCoq1.NW_012136747v1 5138453 132 - 6317780 GGAGCAGTGGGGA-------------------GGGTGACCTGTTTAA---------AT-TGAGCACAGAGTGAAAAGGGGAAGGAGAAAGCTGAGATTAGGATTTTAATTTAGACC-TAGGTTTGAGGG---GGCAGCAGGATATCCAGTCTGCAACTTACA-TAA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36343860 129 - 42659167 GGAGCAGTAGGGA-------------------GGGTGACCTGTTTAA---------GC-TGAGCACAAAATAGAAAGAGGAAAGAG--AGCTGAAATTAGGATTTTATTTTAGACC-TAGGTTTGA-GG---GGCAGCAGGATATCCAGTCTGTAACTTACA-CAA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46150928 159 - 69331447 GGAGCAAGGGGGTCGGGGTGGGGGGTGGAGAGAGGTGACCTCTTGAAGGCCCGATGGC-TGAGAGCAGAATCAAA--GGGACAGTGGAGAGACAGACTAGGATTTTATTTTAAACCTTGAGTTTGAGGG---GGCAGCAGGATATCCAGTCTGTAATTTCCA-CAA i canFam3.chr10 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 135442 0 + 1056298 C a score=5502.000000 s hg38.chr22_GL383582v2_alt 139649 1 + 162811 A s panTro5.chr22 28919213 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41193760 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216606 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709076 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328494 1 + 92844088 G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87674859 1 - 96509753 G i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7171828 1 - 13098629 G i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131672 1 - 4483953 G i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24761843 1 + 33263144 G i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042634 1 - 14338769 G i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981733 1 + 1946073 G i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008180 1 - 2117846 A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920143 1 - 16357246 A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403242 1 - 1807191 A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34204 1 - 704494 A i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5138585 1 - 6317780 A i proCoq1.NW_012136747v1 C 0 I 166 s otoGar3.GL873526 36343989 1 - 42659167 A i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46151087 1 - 69331447 A i canFam3.chr10 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 135442 0 + 1056298 C e micMur3.chr7 5776764 162 + 108171978 I a score=113611.000000 s hg38.chr22_GL383582v2_alt 139650 9 + 162811 CAGCAAATA s panTro5.chr22 28919214 9 + 37823149 CAGCAAATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41193761 9 + 50109623 CAGCAAATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216607 9 + 4464012 CAGCAAATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709077 9 - 115148730 CAGCAAATA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328495 9 + 92844088 CAGCAAATA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87674860 9 - 96509753 CAGCAAATA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7171829 9 - 13098629 CAGCAAATA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131673 9 - 4483953 CAGCAAATA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24761844 9 + 33263144 CAGCAAATA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042635 9 - 14338769 CAGCAAATA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981734 9 + 1946073 CAACAAATA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008181 9 - 2117846 CAGCAAATA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920144 9 - 16357246 CAGCAAACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403243 9 - 1807191 CAGCAAACA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34205 9 - 704494 CAGCAAATA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36343990 9 - 42659167 TAGTAAATA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46151088 9 - 69331447 GAGCAAACA i canFam3.chr10 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 135442 0 + 1056298 C e proCoq1.NW_012136747v1 5138586 166 - 6317780 I e micMur3.chr7 5776764 162 + 108171978 I a score=1841688.000000 s hg38.chr22_GL383582v2_alt 139659 195 + 162811 TCCAATCATTCTTTTA---TTGTTGTTTTtaagcatctactatgt-gctgggctgtttactagacctgggaaaataacTAGGACACTGTT-CTATCCTGAAAAGCCTCAAA--CTGCAAGAGAGTAA---CGCAGGTACAGTACAGTGAAGAGAGAGGGTCAGAAGATAGGGTGCGTAACAACAGGTTTGTTGAAGGCCACGGCA s panTro5.chr22 28919223 195 + 37823149 TCCAATCATTCTTTTA---TTGTTGTTTTtaagcatctactatgt-gctgggctgtttactagacctgggaaaataacTAGGACACTGTT-CTATCCTGAAAAGCCTCAAA--CTGCAAGAGAGTAA---CGCAGGTACAGTACAGTGAAGAGAGAGGGTCAGAAGATAGGGTGTGTAACAACAGGTTTGTTGAAGGCCACGGCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41193770 195 + 50109623 TCCAATCATTCTTTTA---TTGTTGTTTTtaagcatctactatgt-gctgggctgtttactagacctgggaaaataacTAGGACACTGTT-CTATCCTGAAAAGCCTCAAA--CTGCAAGAGAGTAA---CGCAGGTACAGTACAGTGAAGAGAGAGGGTCAGAAGATAGGGTGTGTAACAACAGGTTTGTTGAAGGCCACGGCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216616 195 + 4464012 TCCAATCATTCTTTTA---TTGTTGTTTTTAAGCATATACTATGT-GCTGGGCTGTTTACTAGACCTGGGAAAATAACTAGGACACTGTT-CTATCCTGAAAAGCCTCAAA--CTGCAAGAGAGTAA---CGCAGGTGCAGTACAGTGAAGAGAGAGGGTCAGAAGATAGGGTGTGTAACAACAGGTTTGTTGAAGGCCACGGCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709086 193 - 115148730 TCCAGTCATTCTTTTATTGTTGTTGttttcaagcatctactatgt-gctgggctgtttactagacctgggaaaataactaggacactgtt-ctatcctgaaaagcctcaAA--CTGCAAAAGAATAA---CACAGTTGCAGTACAGTGA--AGAGAGGGTCAGAAGACAGGGTGTGT---AACAGGTTTGTTGAAGGCCACGGCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328504 187 + 92844088 TCCAATCATTCTTTTATTGTTGTTGTTTTTAAGCATCTACTATGG-GCTGGGCTGTTTACTAGACCTGGGAAGATAACTAGGACACTGTT-CTATCCTGAAAAGCCTCAAA--CTGCAAGAGAACAA-----CAGCTGCAGTACAGTGA--AGAAAGGCTCAGAAGATAGG----GT---AACAGGTTTGTTGAAGGCCATGGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87674869 187 - 96509753 TCCAATCATTCTTTTATTGTTGTTGTTTTTAAGCATCTACTATGG-GCTGGGCTGTTTACTAGACCTGGGAAGATAACTAGGACACTGTT-CTATCCTGAAAAGCCTCAAA--CTGCAAGAGAACAA-----CAGCTGCAGTACAGTGA--AGAAAGGCTCAGAAGATAGG----GT---AACAGGTTTGTTGAAGGCCATGGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7171838 185 - 13098629 TCCAATCATTCTTTTATTGTTGTTGTTTTTAAGCATCTACTATGG-GCTGGGCTGTTTACTAGACCTGGGAAGATAACTAGGACACTGTT-CTATCCTGAAAAGCCTCAAA--CTTCA--AGAACAA-----CAGCTGCAGTACAGTGA--AGAAAGGCTCAGAAGATAGG----GT---AACAGGTTTGTTGAAGGCCATGGCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131682 187 - 4483953 TCCAATCATTCTTTTATTGTTGTTGTTTTTAAGCATCTACTATGG-GCTGGGCTGTTTACTAGACCTGGGAAGATAACTAGGACACTGTT-CTATCCTGAAAAGCCTCAAA--CTGCAAGAGAACAA-----CAGCTGCAGTACAGTGA--AGAAAGGCTCAGAAGATAGG----GT---AACAGGTTTGTTGAAGGCCATGGCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24761853 191 + 33263144 TCCAATTATTCTTTTATTGTTGTTGTTTTTAAGCATCTACTATGG-GCTGGGCTGTTTACTAGACCTGGGAAGATAACTAGGACACTGTT-CTATCCTGAAAAGCCTCAAA--CTGCAAGAGAACAA-----CAGCTGCAGTACAGTGA--AGAAAGGCTCAGAAGACAGAGTGTGT---AACAGGTTTGTTGAAGGCCATGGCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042644 184 - 14338769 TCCAATCATTCTTTTATTGTTGTTGTTTTTAAGCATCTACTATGG-GCTGGGCTGTTTACTAGACCTGGGAAGATAACTAGGACACTGTT-CTATCCTGAAAAGCCTCAAA--CTGCAAGAG---AA-----CAGCTGCAGTACAGTGA--AGAAAGGCTCAGAAGATAGG----GT---AACAGGTTTGTTGAAGGCCATGGCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981743 191 + 1946073 TCCAATCATTCTTTTACTGGTGTTGTTTTTAAGCATCTACTATAT-GCTGCGCTGTTTACTAGACCCGGGAAGATAACTAGGACACTGTT-CTATCCTGAAAAGCCTCAAA--CTGCAAGAGAACAA-----CAGCTGCAGAACAGTGA--AGAAAGGCTCAGAAGATAGGGTGTGT---AACAGGTTTGTTGAAGGCCATGGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008190 194 - 2117846 ACCAATCATTCTTTTC-TACTGTTGCTTTtaagcatctactatgt-gctgggctgtttactagacctgggaaaataacTGGGACACTGTT-CTATCCTGAAAAGCCTCAAACCCTACAAGAGAATAA---CACAACTGCAGTACAGTGA--AGAAAGGGTCAGAAAACAGAGTGTGT---AACAGGTTTGCTGAAGGCCATGGCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920153 195 - 16357246 TCCAATCATTCTTTTC-TACTGTTGCTTTTAAGCATCTACTATGT-GCTGGGCTGTTTAATGGACCTGGGAAAATAACTGGGACACTGTT-CTATCCTGAAAAGCCTCAAACCCTACAAGAGAATAA---CATAACTGCAGTACAGTGA--AGAAAGGGTCAGAAGACAGAGTGTGT--CAACCGGCGTGTTGAAGGCCATGGCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403252 195 - 1807191 TCCAATCATTCTTTTC-TACTGTTGCTTTtaagcatctactatgt-gctgggctgtttactggacctgggaaaataacTGGGACACTGTT-CTATCCTGAAAAGCCTCAAACCCTACAAGAGAGTAA---CACAACTGCAGTACAGTGA--AGAAAGGGTCAGAAGACAGTGTGTGT--TAACAGGTTTGTTGAAGGCCATGGCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34214 195 - 704494 TCCAATCATTCTTTTC-TACTGTTGCTTTtaagcatctactatgt-gctgggctgtttactagacctgggaaaataacTGGGACACTGTT-CTATCCTGAAAAGCCTCAAACCCTACAAGAGAATAA---CACAACTACAGTGCAGTGA--AGCAAGGGTCAGAAGACAGAGTGTGT--TAACAGGTTTGTCGAAGGCCATGGCA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36343999 143 - 42659167 GCCAATCATTTGATTT--------TTTTTTTAGCATTTACTATATAGCTGGGCCCTTT-CTAAGCCTGGGAAAATGAC----ACACTGTT-GTGTCCTGAAAAGGCTCACATTCTCCTAGAAA---------------------AGTGC--AG----------------------GT---AACAGGTTTGGAGAGGGCCCTGGCC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46151097 164 - 69331447 CCCAGTTGTTCGATTt---------ttctttagtatccactatgt-gctgggcc-ctcaccaggcctgggaacaca---tggac-------------------gactaaga--cTGTGGAAGAGAAGGAAGACAACTGCAGTGCAGTGA--GATCGGGGCCACGGGGCAGAGCGTGT---AACAGGATTGGCGA-GGCCGCTGCA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 135442 131 + 1056298 ----------------------------------------------------TCCTTTACTAGGCCCTGGACGAT------gacactgttcctgccctgaaaaggctcaca--ctctagaagagaag----acaactgtaatacagTGA--CAGCAGGGCCC-----CAGACTGGGT---AACAGGTGTGGGGAGGACACGAGTA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5138586 166 - 6317780 I e micMur3.chr7 5776764 162 + 108171978 I a score=30685.000000 s hg38.chr22_GL383582v2_alt 139854 2 + 162811 AT s panTro5.chr22 28919418 2 + 37823149 AT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41193965 2 + 50109623 AT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216811 2 + 4464012 AT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709279 2 - 115148730 AT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328691 2 + 92844088 AT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87675056 2 - 96509753 AT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172023 2 - 13098629 AT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131869 2 - 4483953 AT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762044 2 + 33263144 AT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042828 2 - 14338769 AT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981934 2 + 1946073 AT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008384 2 - 2117846 AT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920348 2 - 16357246 AT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403447 2 - 1807191 AT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34409 2 - 704494 AT i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5776926 2 + 108171978 AT i micMur3.chr7 I 162 C 0 s otoGar3.GL873526 36344142 2 - 42659167 AT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46151261 2 - 69331447 AG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 135573 2 + 1056298 AT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5138586 166 - 6317780 I a score=837001.000000 s hg38.chr22_GL383582v2_alt 139856 59 + 162811 TTTCCTTTCCAACCATACTGCTCACTATTGGC-----CAAACCCACCACTCC---ACACAGACCATG s panTro5.chr22 28919420 59 + 37823149 TTTCCTTTCCAACCATACTGTTCACTATTGGC-----CAAACCCACCACTCC---ACACAGACCATG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41193967 59 + 50109623 TTTCCTTTCCAACCATACTGTTCACTATTGGC-----CAAACCCACCACTCC---ACACAGACCATG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216813 59 + 4464012 TTTCCTTTCCAACCATACTGCTCACTATTGGC-----CAAACCCACCACTCC---ACACAGACCATG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709281 59 - 115148730 TTTCCTTTCCAACCATACTGCTCACTATTGGC-----CAAACCCACCACTCC---ACATAGACCATG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328693 61 + 92844088 TTTCCTTTGCAACCATACTGTTCACTATTGGCCAA-TCAAACCCATCACTCC---ACACAG--CATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87675058 61 - 96509753 TTTCCTTTGCAACCATACTGTTCACTATTGGCCAA-TCAAACCCATCACTCC---ACACAG--CATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172025 63 - 13098629 TTTCCTTTGCAACCATACTGTTCACTATTGGCCAA-TCAAACCCATCACTCC---ACACAGACCATG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131871 63 - 4483953 TTTCCTTTGCAACCATACTGTTCACTACTGGCCAA-TCAAACCCATCACTCC---ACACAGACCATG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762046 63 + 33263144 TTTCCTTTGCAACCATACTGTTCACTATTGGCCAA-TCAAACCCATCACTCC---ACACAGACCATG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042830 63 - 14338769 TTTCCTTTGCAACCATACTGTTCACTATTGGCCAA-TCAAACCCATCACTCC---ACACAGACCATG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981936 63 + 1946073 TTTCCTTTGCAACCATATTGTTCACTATTGGCCAA-CCAAACCCATCACTCC---ACACAGACCATG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008386 63 - 2117846 TTTCCTTTCCAACCATACTGCTCATTATTGGCCAA-CCAAATCCACCACTCT---ACACAGATCGTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920350 63 - 16357246 TTTCCTTTCCAACCATACTGCTCATTATTGGCCAA-CCAAATCCACCACTCC---ACACAGATTGTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403449 63 - 1807191 TTTCCTTTCCAACCATACTGCTCATTATTGGCCAA-CCAAATCCACCACTCC---ACACAGATTGTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34411 63 - 704494 TTTCCTTTCCAAGCATACTGCTCATTTTTGGCCAA-CCAAATCCACCACTCC---ATACAGATCGTG i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5776928 64 + 108171978 TTTTCTTTCCAACCGTACTGCTCATTACTGGCCAACCCAAACCCACCTCTCC---ATACAGACCATG i micMur3.chr7 C 0 I 59 s proCoq1.NW_012136747v1 5138752 64 - 6317780 TTTTCTTTCCAACCATACTGCTCACTACTGGCCAACCCAAACCCACCTCTCC---ATACAGACCATG i proCoq1.NW_012136747v1 I 166 I 36 s otoGar3.GL873526 36344144 67 - 42659167 TTTTCTTTCCAATCATATTGCTCACCACTGGCCAACCCAAACCCATCTCTCCATTATACACAGCATA i otoGar3.GL873526 C 0 I 13 s canFam3.chr10 46151263 63 - 69331447 TTTCCTTTCCAACCATACTGCTCACTACTGCTCAACCCACATCCACTACTCT---G-GCAGACCATG i canFam3.chr10 C 0 I 13 s dasNov3.JH570235 135575 62 + 1056298 CTTCCTTTCCTACAACATTGCCCAA-ATTTGCCAACTCAAGCTCACCATTC----ATCCAGACTGTG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I a score=297852.000000 s hg38.chr22_GL383582v2_alt 139915 24 + 162811 -------------CGCTCCGACCTCTTGATTTGTGCT s panTro5.chr22 28919479 24 + 37823149 -------------CGCTCCGACCTCTTGATTTGTGCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194026 24 + 50109623 -------------CGCTCCGACCTCTTGATTTGTGCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216872 24 + 4464012 -------------CGCTCCGACCTCTTGATTTGTGCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709340 24 - 115148730 -------------CGCTCTGACCTCTTGATTTGTGCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328754 24 + 92844088 -------------CACTCCGACCTCTTGATTTGTGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87675119 24 - 96509753 -------------CACTCCGACCTCTTGATTTGTGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172088 24 - 13098629 -------------CACTCCGACCTCTTGATTTGTGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131934 24 - 4483953 -------------CACTCCGACCTCTTGATTTGTGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762109 24 + 33263144 -------------CACTCCGACCTCTTGATTTGCGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042893 24 - 14338769 -------------CACTCTGACCTCTTGATTTGTGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 981999 24 + 1946073 -------------CACTCCGACCTCTTGATTTGTGCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008449 24 - 2117846 -------------CCCTCTGACCTCTTGATTCGTGCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920413 24 - 16357246 -------------CCCTCCGACCTCTTGATTCGTGCT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403512 24 - 1807191 -------------CTCTCTGACCTCTTGGTTCGTGCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34474 24 - 704494 -------------CCCTCCGACCTCTTGATTCATGCT i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36344224 24 - 42659167 -------------CACCCTTACCTCTGGCCTTGTCCT i otoGar3.GL873526 I 13 C 0 s canFam3.chr10 46151339 24 - 69331447 -------------GACTCCTACCTCATGACTTGTGCT i canFam3.chr10 I 13 C 0 s dasNov3.JH570235 135637 37 + 1056298 TACTGAACACCTGCATCCCGACATCTTGACTTGTGCT i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5138816 36 - 6317780 I e micMur3.chr7 5776992 59 + 108171978 I a score=292034.000000 s hg38.chr22_GL383582v2_alt 139939 22 + 162811 TGGCCTCTCCCCAAAACACTTT s panTro5.chr22 28919503 22 + 37823149 TGGCCTCTCCCCAAAAcacttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194050 22 + 50109623 TGGCCTCTCCCCAAAAcacttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216896 22 + 4464012 TGGCCTCTCCCCAAAAcacttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709364 22 - 115148730 TGGCCTCTCCCCAAAACATTTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328778 22 + 92844088 TGGTCTCTCCCCAAAAcacttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87675143 22 - 96509753 TGGTCTCTCCCCAGAACACTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172112 22 - 13098629 TGGTCTCTCCCCAAAAcacttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131958 22 - 4483953 TGGTCTCTCCCCAAAAcacttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762133 22 + 33263144 TGGTCTCTCCCCAAAACACTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042917 22 - 14338769 TGGTCTCTCCCCAAAACACTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 982023 22 + 1946073 TGGCCTCTCCCCAAAAcacttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008473 22 - 2117846 TGGCCTCTCCCCAAAATACTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920437 22 - 16357246 TGGCCTCTCCCCAAAATACTTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403536 22 - 1807191 TGACCTCTCCCCAAAATAGTTt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34498 22 - 704494 TGGCCTCTCCCCAAAATActtt i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5138852 22 - 6317780 TGGCCCCTCCCAAAAATGTTTC i proCoq1.NW_012136747v1 I 36 C 0 s otoGar3.GL873526 36344248 22 - 42659167 TGGTCCCTCCCAAAAATGTTTC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46151363 22 - 69331447 TTGCTCCTCCCAAAAATGTTTC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 135674 21 + 1056298 ATGCCCCTCCCAAAAAGTTTT- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e micMur3.chr7 5776992 59 + 108171978 I a score=1310058.000000 s hg38.chr22_GL383582v2_alt 139961 90 + 162811 CCAAATCTGAGTCATTCCTCAAGG--------CC--------ATTTGGCTTCCTCACTGAAGGCTTCAGGAAAACGGCTCAGCTTGGTGATCTTGCCTTCCCCAAA s panTro5.chr22 28919525 90 + 37823149 ccaaatctgagtcattcctcaagg--------cc--------atttggcttcctcactgaaggcttcaggaaaacggctcagcttggtgatcttgccttccccaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194072 90 + 50109623 ccaaatctgagtcattcctcaagg--------cc--------atttggcttcctcactgaaggcttcaggaaaacggctcagcttggtgatcttgccttccccaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3216918 90 + 4464012 ccaaatctgagtcattcttcaagg--------cc--------acttggcttcctcactgaaggcttcaggaaaacggctcagcttggtgatcttgccttccccaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709386 90 - 115148730 CCAAATCTGAGTCATTCCTCAAGG--------CC--------ACTTGGCTTCCTCACTGAAGCCTTCAGGAAAACGGCTCAGCTTGGTGATCTTGCCTTCCCCAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328800 90 + 92844088 ccaaatctgagtcattcctcaagg--------cc--------acttggtttcctcactgaagccttcagcaaaactgctcagcttggtgatcttgccttccccaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87675165 90 - 96509753 CCAAATCTGAGTCATTCCTCAAGG--------CC--------ACTTGGTTTCCTCACTGAAGCCTTCAGCAAAACTGCTCAGCTTGGTGATCTTGCCTTCCCCAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172134 90 - 13098629 ccaaatctgagtcattcctcaagg--------cc--------acttggtttcctcactgaagccttcaggaaaactgctcagcttggtgatcttgccttccccaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4131980 90 - 4483953 ccaaatctgagtcattcctcaagg--------cc--------acttggtttcctcactgaagccttcaggaaaactgctcagcttggtgatcttgccttccccaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762155 90 + 33263144 CCAAATCTGAGTCATTCCTCAAGG--------CC--------ACTTGGTTTCCTCACTGAAGCCTTCAGGAAAACTGCTCAGCTTGGTGATCTTGCCTTCCCCAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14042939 72 - 14338769 CCAAATCTGAGTCATTCCTCAAGG--------CC--------ACTTGGTTTCCTC------------------ACTGCTCAGCTTGGTGATCTTGCCTTCCCCAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 982045 90 + 1946073 ccaaatctgagtcattcctcaagg--------cc--------acttggcttcctcactgaagccttcaagaaaactgctcagcttggtgatcttgccttccccaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008495 90 - 2117846 CCAACTCTGAGTCATTCCTCAAGG--------CC--------ATTTGGCTTCCTCACTGAAGCTTTCAGGAAAACTGCTCGGCTTGGTGATCTTGCCTTCCCCAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920459 90 - 16357246 CCAAATCTGAGTCATTCCTCAAGG--------TC--------ATTTGGCTTCCTCACTGAAGCTTTCAGGAAAACCGCTCAGCTTGGTGATCATGCCTTCCCCAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403558 90 - 1807191 ccaaatctgagtcattcctcaagg--------cc--------atttggcttcctcactgaagctttcaggaaaactgctcagcttggtgatcatgccttccccaaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34520 90 - 704494 tcaaatctgagtcattcctcaagg--------cc--------atttggcttccttactgaagctttcaggaaaactgctcagcttggtgatcttgccttacccaaa i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5777051 89 + 108171978 CCAAATCTGAGTCATTCTTCAAGG--------CC--------ATTTGGCCTCCTCAATGAAGCCTCCAG-GAAACTGCTCAACTTGATGATTGTGCCTTCCCTAAA i micMur3.chr7 I 59 I 2605 s proCoq1.NW_012136747v1 5138874 89 - 6317780 CCAAATCTGAGTCATTCTTCAAGG--------CC--------ATTTGGCCTCCTCACTGAAGCCTCCAG-GAAACTGCTCAGCTTGGTGATCTTGCCTTCCCTAAA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36344270 62 - 42659167 CCAAAGCTGAG------------------------------------------TCACTGAAGCCTCCA--GAAACTGCTCAGTTTGGTAATCTTGCCTTCCCCTGA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46151385 94 - 69331447 CCAAATTGGAGTCATTCTTCAAGGCCTGGCTCCC--------ATCTGACCTCTTCACAGAAGCCTTCAAGAAA--CGCTCAGATCCGTGATCTTGTCCTTCCTG-- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 135695 97 + 1056298 CCTAATCTGCATCATTCCTCAAAG--------TCTGGCTCATATCTGGCCTCCTCCGTGAAGCTTCCATGAAAGC-ACTGAGCTCAGTGAGCTTGCCTTCCCCAAA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I a score=5780.000000 s hg38.chr22_GL383582v2_alt 140051 1 + 162811 -C s panTro5.chr22 28919615 1 + 37823149 -c i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194162 1 + 50109623 -c i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3217008 1 + 4464012 -c i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709476 1 - 115148730 -C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328890 1 + 92844088 -c i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87675255 1 - 96509753 -C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172224 1 - 13098629 -c i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4132070 1 - 4483953 -c i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762245 1 + 33263144 -C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14043011 1 - 14338769 -C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 982135 1 + 1946073 -c i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008585 1 - 2117846 -C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920549 1 - 16357246 -C i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403648 1 - 1807191 -c i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34610 1 - 704494 -c i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5138963 1 - 6317780 -C i proCoq1.NW_012136747v1 C 0 I 250 s dasNov3.JH570235 135792 1 + 1056298 G- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e canFam3.chr10 46151479 0 - 69331447 C e otoGar3.GL873526 36344332 0 - 42659167 C e micMur3.chr7 5777140 2605 + 108171978 I a score=2737625.000000 s hg38.chr22_GL383582v2_alt 140052 250 + 162811 AGCTACAGCACTTCTTGTCCATACA-----------CC-----ATTACCTGGT----G-----------GCTGTGTCCTTATTTCCCCACTTGGTATGAATGCCTTATCTCCCCAGCTGAGCCATGTATTGTTGAAGGCATGTAACA-----AACATGTCTC-ACATCTACAA-GGTCCTCAAACAGCAGCCAAGCAAACACTTG-TTGCTC--TGCTACTAGACTT--CCCTCCAATCCAGCTTGCA---TTTCAGCA-TCTT-ACTGAA--AAAGATCTGATTAATTCACCCC-----CTATT s panTro5.chr22 28919616 250 + 37823149 agctacagcacttcttgtccatacA-----------CC-----ATTACCTGGT----G-----------GCTGTGTCCTTATTTCCCCACTTGGTATGAATGCCTTATCTCCCCAGCTGAGCCATGTATTGTTGAAGGCATGTAACA-----AACATGTCTC-ACATCTACAA-GGTCCTCAAACAGCAGCCAAGCAAACACTTG-TTGCTC--TGCTACTAGACTT--CCCTCCAATCCAGCTTGCA---TTTCAGCA-TCTT-ACTGAA--AAAGATCTGATTAATTCACCCC-----CTATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194163 250 + 50109623 agctacagcacttcttgtccatacA-----------CC-----ATTACCTGGT----G-----------GCTGTGTCCTTATTTCCCCACTTGGTATGAATGCCTTATCTCCCCAGCTGAGCCATGTATTGTTGAAGGCATGTAACA-----AACATGTCTC-ACATCTACAA-GGTCCTCAAACAGCAGCCAAGCAAACACTTG-TTGCTC--TGCTACTAGACTT--CCCTCCAATCCAGCTTGCA---TTTCAGCA-TCTT-ACTGAA--AAAGATCTGATTAATTCACCCC-----CTATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3217009 250 + 4464012 agctacagcacttcttgtccatacA-----------CC-----ATTACCTGGT----G-----------GCTGTGTCCTTATTTCCCCACTTGATGTGAATGCCTTATCTCCCCAGCTGAGCCATGTATTGTTGAAGGCATGTAACA-----AACATGTCTC-ACATCTACAA-GGTCCTCAAACAGCAGCCAAGCAAACACTTG-TTGCTC--TGCTACTAGACTT--CCCTCCAATCCAGCTTGCA---TTTCAGCA-TCTT-ACTGAA--AAAGATCTGATTAATTCACCCC-----CTATT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709477 250 - 115148730 AGCTACAGCACTTCTTGTCCAAACA-----------CC-----ATTACCTGGT----G-----------GCTGTGTCCTTATTTCCCTACTTGGTATGAATGCCTTATCTCCCCTGCTGAGCCATATATTGTTGAAGGCATGTAACA-----AACATGTCTC-ACATCTACAA-GGTCCTCAAACAGCAGCCAAGCAAACACTTG-TTGGTC--TGCTATTAGACTT--CCCTCCAATCCAACTTGCA---TTTCAGCA-TCTC-AATGAA--AAAGATCTGATCAATTCACCCC-----CTATT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84328891 252 + 92844088 agctacagcacttcttgtccatacA-----------CC-----ATTACCTGCT----G-----------GCTATGTCCTTATTTCTACACTTGGTATGAATGCCTCATCTCCCCAGCTGAGCCATATATTGTTGAAGTCATGTAACA-----GATATGTCTC-ACATCTACAA-GGTCCTCGAACAGCAGCCAAGCAAACACTTG-TTGCTC--TGCTACTAGACTTCCCCCTCCAGTCCAACTTGCA---CTTCAGCA-TCTT-CCTGAA--AAAGATCTGATTAATTCACCCC-----CTATT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87675256 252 - 96509753 AGCTACAGCACTTCTTGTCCATACA-----------CC-----ATTACCTGCT----G-----------GCTATGTCCTTATTTCTACACTTGGTATGAATGCCTCATCTCCCCAGCTGAGCCATATATTGTTGAAGTCATGTAACA-----GATATGTCTC-ACATCTACAA-GGTCCTCGAACAGCAGCCAAGCAAACACTTG-TTGCTC--TGCTACTAGACTTCCCCCTCCAGTCCAACTTGCA---CTTCAGCA-TCTT-CCTGAA--AAAGATCTGATTAATTCACCCC-----CTATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172225 253 - 13098629 agctacagcacttcttgtccatacA-----------CC-----ATTACCTGCA----G-----------GCTATGTCCTTATTTCTACACTTGGTATGAATGCCTCATCTCCCCAGCTGAGCCATATATTGTTGAAGTCATGTAACA-----GATATGTCTC-ACATCTACAA-GGTCCTCGAACAGCAGCCAAGCAAACACTTG-TTGCTC--TGCTACTAGACTTCCCCCTCCAATCCAACTTGCA---CTTCAGCA-TCTTCCCTGAA--AAAGATCTGATTAATTCACCCC-----CTATT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4132071 252 - 4483953 agctacagcacttcttgtccatacA-----------CC-----ATTACCTGGT----G-----------GCTATGTCCTTATTTCCACACTTGGTATGAATGCCTCATCTCCCCAGCTGAGCCACATATTGTTGAAGTCATGTAACA-----AATATGTCTC-ACATCTACAA-GGTCCTCGAACAGCAGCCAAGCAAACACTTG-TTGCTC--TGCTACTAGACTTCCCCCTCCAATCCAACTTGCA---CTTCAGCA-TCTT-CCTGAA--AAAGATCTGATTAATTCACCCC-----CTATT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762246 263 + 33263144 AGCTACAGCACTTCTTGTCCATACAGCACTTCTTGTCC-----ATTACCTGGT----G-----------GCTATGTCCTTATTTCCACACTTGGTATGAATGCCTCATCTCCCCATCTGAGCCATATATTGTTGAAGTCATGTAACA-----AATATGTCTC-ACATCTACAA-GGTCCTCAAACAGCAGCCACGCAAACACTTG-TTGCTC--TGCTACTAGACTTCCCCCTCCAATCCAACTTGCA---CTTCAGCA-TCTT-CCTGAA--AAAGATCTGATTAATTCACCCC-----CTATT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14043012 252 - 14338769 AGCTACAGCACTTCTTGTCCATACA-----------CC-----ATTACCTGGT----G-----------GCTATGTCCTTATTTCCACACTTGGTATGAATGCCTCATCTCCCCAGCTGAGCCATATATTGTTGAAGTCATGTAACA-----AATATGTCTC-ACATCTACAA-GGTCCTCGAACAGCAGCCAAGCAAACACTTG-TTGCTC--TGCTACTAGACTTCCCCCTCCAATCCAACTTGCA---CTTCAGCA-TCTT-CCTGAA--AAAGATCTGATTAATTCAGCCC-----CTATT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 982136 252 + 1946073 agctacagcacttcttgtccatacA-----------CC-----ATTACCTGGT----G-----------GCTATGTCTTTATTTCCACACTTGGTATGAATGCCTCATCTCCCCAGCTGAGCCATATATTGTTGAAGGCATGTAACA-----AATACGTCTC-ACATCTACAA-AGTCCTCCAACAGCAGCCAAGCAAACACTTG-TTGCTC--TGCTACTAGACTTCCCCCTCCAATCCAACTTGCA---CTTCAGCA-TCTT-CCTGAA--AAAGATCTGATTAATTCACCCA-----CTATT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008586 251 - 2117846 AGCTACAGCACTTCTCATCTATACA-----------CC-----ATTACCTGGT----G-----------GCTGTGTCCTTATTTCCCTATTTACT---AATGCTTTTTCTCCCCAGCTGAGCCATACATTGTTGAAGGCATGTAATA-----AACATGTCTC-ACATCTACAA-GGTCCTCGAACAGCAGCCAGGCAAACACTTG-TTGCTC--TGCTACTACACTT--CCCTCCAATACAACTTACA---TTTCAGCA-TCTT-ACTGAA--AAAGATGTGATTAATTCACCCC-CTGGCTATT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920550 250 - 16357246 AGCTACAGCACTTCTCGTCCATATA-----------CC-----ATTACCTGGT----G-----------GCTGTGTCCTTATTTCCCTATTTACT---AATGCCTTTTCTCATGAGCTGAGCCATACATAGTTGAAGGCATGTAACA-----AACATGTCTC-ACATCTACAA-GATCCTAGAACACCTGCCAGGCAAACAC-TG-TTGCTC--TGCTACTACACTT--CTCTCCAATCCACCTTGCA---TTTCAGCA-TCTT-ACTGAA--AAAGATGTGATTAATTCACTCC-CTGGCTATT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403649 250 - 1807191 agctacagcacttctcgtccatacA-----------CC-----ATTACCTGGT----G-----------GCTGTGTCCTTATTTCCCTATTTACT---TATGTCTTTTCTCCCCAGCTGAGCCATACATTGTTGAAGGCACGTAACA-----AACATGTCTC-ATATCTACAA-GATCCTCGAACAGCAGCCAGGCAAACAC-TG-TTGCTC--TGCTACTACACTT--CCCTCCAATCCAACTTGCA---TTTCAGCA-TCTT-ACTGAA--AAAGATGTGATTAATTCACCCC-CTGGCTATT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34611 248 - 704494 agctacagcacttcttgtccatacA-----------CC-----ATCACCTGGT----G-----------GCTGTGTCCTGATTTCCCTATTTACT---AATGCCTTTTCTCCCCAGCTGAGCCATACATTGTTGAAGGCATGTAACA-----AACATGTCTC-ACATCTACAA-GGTCCTCAAACAGCAGCCAGGCAAACACTTG-TTGCTC--TG---CTACACTT--CCCTCCAATCCAACTTGCA---TTTCAGCA-TCTT-ACTGAA--AAAGATGTGATTAATTCACCCC-CTGGCTATT i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36344332 251 - 42659167 ----ACAGCATTTCTCGTCTACACA-----------CCTATCTGTTTCCTGGTCCCCT-----------GCCTTGTCCTTACTTTCCTACTCCATATGAATGTCTCATTTCCCCAACTAGGGCATACA---ATGAAGGC--TCAACA-----AACATGTCTTAACATTTACAA-GGCCCTCTAATAGTAGT----CAAATACTTGTTTGCCC--TGCTGTAAGACTT--ATCTCCTAT-CAACTTACA---TTTTAGCA-TTTA-ACTGAA--ACCAGTCTGATATATACAACCCCCTGACCAC- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46151479 239 - 69331447 ---------ATTTCTTCTCCACACA-----------CC-----ACTCTCCTGT----GCTTGGT-CCCTGCCTTGTCTTTACTTCCCTCCCACATGTGAGTCCCTCATTTCTCCAACTAGGACACACA-TGTTGAAGGTATGTAACA-----AACGTGTCTG-ACATCGACCA-GGCACTCTAACAGT-------CAAATACCTG-CTTCCCCATACTACAGGACTT-------CGATCCAACTTACA---TTTCAGCACTGTT-ACCGAA--ATGAGTCCAATCAAGTCACTTC------GAT- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 135793 259 + 1056298 AGTTACAGGATTTGTTGTCCACACC-----------CC-----ACTATATGGT----GTCCAGTCCCCTGCCTTGTCCTTATTCCTCTATTTCATGTGAATGCCTTATCTCCCCAA---------------TCAAAAGTATGTGACATAACTGAGATGCCTG-ATACCTCCTATGGCTCCTTAACAATTGGAATGCAAATACTTT-GCGTTCC-TGCTTCAAGACTT--CCCTCTAATCCAACTCATAGGCTTCCAGCATTCTT-ACTGAAGCAGAGGTCCCATCAAGTCATCTT-----CTGAC i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5138964 250 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I a score=532208.000000 s hg38.chr22_GL383582v2_alt 140302 37 + 162811 TTAAAACCTTCACTGGCTCCCAATTATTAGTACAGCA- s panTro5.chr22 28919866 37 + 37823149 TTAAAACCTTCACTGGCTCCCAATTATTAGTACAGCA- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194413 37 + 50109623 TTAAAACCTTCACTGGCTCCCAATTATTAGTACAGCA- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3217259 37 + 4464012 TTAAAACCTTCACTGGCTCCCAATTATTAGTACAGCA- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709727 37 - 115148730 TTAAAAACTTCACTGGCTCCCAATTATTAGCATAGCA- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84329143 37 + 92844088 TTAAAACCTTCACCGGCTCCCAATTATTAGTATAGCA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87675508 37 - 96509753 TTAAAACCTTCACCGGCTCCCAATTATTAGTATAGCA- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172478 37 - 13098629 TTAAAACCTTCACCGGCTCCCAATTATTAGTATAGCA- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4132323 37 - 4483953 TTAAAACCTTCACCGGCTCCCAATTATTAGTATAGCA- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762509 37 + 33263144 TTAAAACCTTCACTGGCTCCCAATTATTAGTATAGCA- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14043264 37 - 14338769 TTAAAACCTTCACCGGCTCCCAATTATTAGTATAGCA- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 982388 37 + 1946073 TTAAAAACTTCACTGGCTCCCAATTATTAGTATAGCA- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008837 37 - 2117846 TTAAAACCTCCACTGGCTCCCAGTTATTAGTATAGCA- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920800 37 - 16357246 TTAAAACCTTCACTGGCTCCCAGTTATTAGTACAGCA- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403899 37 - 1807191 TTAAAACCTTCACTGGCTCCCAGTTATTAGTATAGCA- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34859 37 - 704494 TTAAAACCTTCACTGGCTCCCAGTTATTAGTATAGCA- i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5139214 37 - 6317780 TTAAAACTGTCACTGGCTCCTAATTATTAGCACAGCA- i proCoq1.NW_012136747v1 I 250 I 1591 s otoGar3.GL873526 36344583 35 - 42659167 TTAAAACCATCACTGGCTCCTAATTATTAGTACAA--- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46151718 36 - 69331447 CTAAAACCTTCCCTGGCTCCTAATTATTAAT-CGGCA- i canFam3.chr10 C 0 I 2 s dasNov3.JH570235 136052 38 + 1056298 TTAAAGCTTTCCCTGGCTCCTAATTATCCATACGACTA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e micMur3.chr7 5777140 2605 + 108171978 I a score=1086362.000000 s hg38.chr22_GL383582v2_alt 140339 86 + 162811 CATGCAGA---------CTTGTCTTCCAGGTGTACCACACAGCTTT-C----CCTTCCCTGCCTC-----CCAAACACCTTAAAGTTGAAGCAACAGCAATAAAA s panTro5.chr22 28919903 86 + 37823149 CATGCAGA---------CTTGTCTTCCAGGTGTACCACACAGCTTT-C----CCTTCCCTGCCTC-----CCAAACACCTTAAAGTTGAAGCAACAGCAATAAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194450 86 + 50109623 CATGCAGA---------CTTGTCTTCCAGGTGTACCACACAGCTTT-C----CCTTCCCTGCCTC-----CCAAACACCTTAAAGTTGAAGCAACAGCAATAAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3217296 86 + 4464012 CATACAGA---------CTTGTCTTCCAGGTGTACCACACAGCTTT-C----CCTTCCCTGCCTC-----CCAAACACCTTAAAGTTGAAGCAACAGCAATAAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709764 87 - 115148730 CATGCAGA---------CTTGTCTTCCAGGTGTGCCACACAGCTTTCC----CCTTCCCTGCCTC-----CCAAACACCTTAAAGTTGAAGTAACAGCAATAAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84329180 87 + 92844088 CATGCAGA---------CTTGTCTTCCAGGTGTGCCACACAGCTTTCC----CGTTCCCTGCCTC-----CCAAACACCTTAAAGTTGAAGCAACGGCAATAAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87675545 87 - 96509753 CATGCAGA---------CTTGTCTTCCAGGTGTGCCACACAGCTTTCC----CGTTCCCTGCCTC-----CCAAACACCTTAAAGTTGAAGCAACAGCAATAAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172515 87 - 13098629 CATGCAGA---------CTTGTCTTCCAGGTGTGCCACACAGCTTTCC----CGTTCCCTGCCTC-----CCAAACACCTTAAAGTTGAAGCAACAGCAATAAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4132360 87 - 4483953 CATGCAGA---------CTTGTCTTCCAGGTGTGCCACACAGCTTTGC----CGTTCCCTGCCTC-----CCAAACACCTTAAAGTTGAAGCAACAGCAATAAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762546 87 + 33263144 CATGCAGA---------CTTGTCTTCCAGGTGTGCCACACAGCTTTCC----CATTCCCTGCCTC-----CCAAACACCTTAAAGTTGAAGCAACAGCAATAAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14043301 87 - 14338769 CATGCAGA---------CTTGTCTTCCAGGTGTGCCACACAGTTTTCC----CGTTCCCTGCCTC-----CCAAACACCTTAAAGTTGaagcaacagcaataaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 982425 87 + 1946073 CATGCAGA---------CTTGTCTTCCAGGTGTGCCACACAGCTTTCC----CCTTCCCTGCCTC-----CCAAACACCTTAAAGTTGAAGcaacagcaataaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008874 87 - 2117846 CATGCAGA---------CTTGTCTTCCAGGTGAGCCACGCAGCTTTCC----CCTTCCCTGCCTC-----CCAAACACCTTAAAGTTGAGGCAACAGCAATAAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920837 87 - 16357246 CATGCAGA---------CTTGTCTTCCAGGTGAGCCACGCAGCTTTCC----CCTTCCCTGCTTC-----CCAAACACCTTAAAGTTGAGGCAACAGCAATAAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1403936 87 - 1807191 CATGCAGA---------CTTGTCTTCCAGGTGAGCCACGCAGCTTTCC----CCTTCCCTGCCTC-----CCAAACACCTTAAAGTTGAGGCAACAGCAATAAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34896 87 - 704494 CATACAGA---------CTTGTCTTCCAGGTGAGCCATGCAGCTTTCC----CCTTCCCTGCCTC-----CCAAACACCTTAAAGTTGAGGCAACAGCAATAAAA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36344618 95 - 42659167 CATGCAGACTGCTCAACCTTGTTTCCCAGGCATGCCACACAGTCTTCC----CTTCCCCTACCTT-----CCAAACACTCTGAAGCTGAGGCAATGACAATCAA- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46151756 96 - 69331447 CATACAGC----CCAGTCTCATCCTACAGGCGTGCCACACAGCCTGCC----TTGTCCCTGCCTCGCACACCGAACATCCTAAC-CTGGAACAGTGGCAATCAAA i canFam3.chr10 I 2 C 0 s dasNov3.JH570235 136090 100 + 1056298 CGGGGAGATAGCTCAGTCTCATCCCTGAGCCATGCCACACTGCCTTCCCTTTCTTTCCCTGCCTC-----CCAAACACCCTAAGGCTGGAGAAATGGCATCAAAA i dasNov3.JH570235 C 0 I 205 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I a score=282033.000000 s hg38.chr22_GL383582v2_alt 140425 25 + 162811 ATagtcacgtgctacataacacatt s panTro5.chr22 28919989 25 + 37823149 ATagtcacgtgctacataacgcatt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194536 25 + 50109623 ATagtcacgtgctacataacgcatt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3217382 25 + 4464012 ATagtcacgtgctacgtaacacatt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709851 25 - 115148730 ATagtcacgtgctacataacgcatt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84329267 25 + 92844088 Acagtcacgtgctacataacgcatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87675632 25 - 96509753 Acagtcacgtgctacataacgcatt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172602 25 - 13098629 Acagtcacgtgctacataacgcatt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4132447 25 - 4483953 Acagtcacgtgctacataacacatt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762633 23 + 33263144 --agtcacgtgctacataacgcatt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14043388 25 - 14338769 acagtcacgtgctacataacacatt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 982512 25 + 1946073 acagtcacgtgctacataacgcatt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008961 25 - 2117846 Acagtcacatgctacataaagcatt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920924 25 - 16357246 Acagtcacgtactacgtaacacatt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1404023 25 - 1807191 Acagtcacgtactacataacgcatt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 34983 25 - 704494 Acagtcacgtgctacataacgcatt i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36344713 23 - 42659167 --agtcacacactgcataacacctt i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46151852 24 - 69331447 ACAAATACAGG-TATATAcctcatt i canFam3.chr10 C 0 I 2781 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I a score=540371.000000 s hg38.chr22_GL383582v2_alt 140450 53 + 162811 tctgtcaacaat-gaccacgtacacaatggtggtcccatc-agagtacaatggag s panTro5.chr22 28920014 53 + 37823149 tctgtcaacaat-gaccacgtacacaatggtggtcccatc-agagtacaatggag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194561 53 + 50109623 tctgtcaacaat-gaccacgtacacaatggtggtcccatc-agagtacaatggag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3217407 53 + 4464012 tctgtcaacaat-gaccacgtacacaatggtggtcccatc-agagtacaatggag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709876 53 - 115148730 tctgtcaacaac-gataacgtacacaatggtggtcccatc-agagtacaacggag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84329292 53 + 92844088 tctgtcaacaat-gaccacgtacacaatagtggtcccatc-agagtacaacggag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87675657 53 - 96509753 tctgtcaacaat-gaccacgtacacaatagtggtcccatc-agagtacaacggag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172627 53 - 13098629 tctgtcaacaat-gaccacgtacacaatagtggtcccatc-agagtacaacggag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4132472 53 - 4483953 tctgtcaacaat-gaccacgtacacaatagtggtcccatc-agagtacaacggag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762656 53 + 33263144 tctgtcaacaat-gaccacgtacacaatactggtcccatc-agagtacaacggag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14043413 53 - 14338769 tctgtcaacaat-gaccacgtacacaatagtggtcccatc-agagtacaacggag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 982537 53 + 1946073 tctgtcaacaat-gaccacgtacacaatagtggtcccatc-agagtacaacggag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2008986 54 - 2117846 tctgtcaatgag-aaccacatacacaacggtggtgccgttaagagtacaatggag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8920949 54 - 16357246 tctgtcaacgac-gaccacatacacaacggtggtcccattaagagtacaatggag i saiBol1.JH378157 C 0 I 1662 s cebCap1.NW_016107750v1 1404048 54 - 1807191 tctgtcaacgat-gaccacatacacgacggtggtcccattaagagtacaatggag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 35008 54 - 704494 tctgtcaaccac-gaccacatacacaacggtggtaccattaagagtacaatggag i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36344736 54 - 42659167 tcggttaactatggagtaaatacacaatggcagtcccata-acattataatggca i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I a score=1291267.000000 s hg38.chr22_GL383582v2_alt 140503 144 + 162811 ctgaaaaactcctattgcctggtgatgctgta-gctgtcataatgcaacatattacctccttgtttatggtcatgcaagtgtaaaccta-atatactgccagtggtataaaagcatagcacatacaactatgt--acagtacataata s panTro5.chr22 28920067 144 + 37823149 ctgaaaaattcctattgcctggtgatgctgta-gctgtcataatgcaacgtattacctccttgtttatggtcatgcaagtgtaaaccta-atatactgccagtggtataaaagcatagcacatacaactatgt--acagtatgtaata i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194614 144 + 50109623 ctgaaaaattcctattgcctggtgatgctgta-gctgtcataatgcaacgtattacctccttgtttatggtcatgcaagtgtaaaccta-atatactgccagtggtataaaagcatagcacatacaactatgc--acagtacgtaata i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3217460 144 + 4464012 ctgaaaaattcctattgcctggtgatgctgta-gctgtcataatgcaacgtattacctccttgtttatggtcatgcaagtgtaaaccta-atatactgccagtggtataaaagcatagcacatacaactatgt--acagtacatcata i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106709929 144 - 115148730 ctgaaaaattcctatcgcctggtgatgctgta-gctgtcataatgcaatgtattacctccttgtttatggtgatgcaagtgtaaaccta-atatactgccagtggtataaaagcacagcacatacaactacgt--acagtacataata i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84329345 144 + 92844088 ctgaaaaattcccatcgcctggtgacgttgta-gctgtcataaagcaatgtattacctccttgtttatggtgatgcaggtataaaccta-ctatactgtcagtggtagaaaagcatagcacatacaactatgt--acagtatataata i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87675710 144 - 96509753 ctgaaaaattcccatcgcctggtgacgttgta-gctgtcacaaagcaatgtattacctccttgtttatggtgatgcaggtataaaccta-ctatactgtcagtggtagaaaagcatagcacatacaactatgt--acagtatataata i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172680 144 - 13098629 ctgaaaaattcccatcgcctggtgacgttgta-gctgtcataacgcaatgtattacctccttgtttatggtgatgcaggtataaaccta-ctatactgtcagtggtagaaaagcatagcacatacaactatgt--acagtatataata i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4132525 144 - 4483953 ctgaaaaattcccatcgcctggtgacgttgta-gctgtcataactcaatgtattacctccttgtttatggtgatgcaggtataaaccta-ctatactgtcagtggtagaaaagcatagcacatacaactatgt--acagtatataata i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762709 144 + 33263144 ctgaaaaattcccatcgcctggtgacgttgta-gctgtcataacgcaatgtattacctccttgtttatgatgatgcaggtataaaccta-ctatactgtcagtggtagaaaagcatagcacatacaactatgt--acagtatataata i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14043466 144 - 14338769 ctgaaaaattcccatcgcctggtgacgttgta-gctgtcataacgcaatgtattacctccttgtttatggtgatgcaggtataaaccta-ctatactgtcagtggtagaaaagcatagcacatacaactatgt--acagtatataata i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 982590 145 + 1946073 ctgaaaaattcccatcgcctggtgacgttgtactctgtcataatgcaatgtattacctccttgtttatggtgatgcaggtataaaccta-ctatactgtcagtggtataaaagcatagcacatacaactatgt--acagtatataata i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2009040 142 - 2117846 ctgaaaaatttctactgcccggtgactttgta-gctatcataatgcaatgtattacctccttgtttactgtgatgcagctgtaaaccta-ctatactgccagtggtat-aaagcacagcacatacaacta-gt--acagtacttaata i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1404102 142 - 1807191 ctgaaaaatttctattgcctggtgactttgta-gctatcataatgcaatgtattacctccttgtttattgtgatgcaggtataaaccta-ctatactgccagtgatat-aaagcatagcatatacaacta-gt--acagtacttaata i cebCap1.NW_016107750v1 C 0 I 2162 s aotNan1.NW_018512389v1 35062 138 - 704494 ctgaaaaatttctattgcccggtgactttgta-gctatcataatgcaatgtattacctccttgtttattgtgatgcaggtgtaaaccta-ctatactgccagtgacat-aaagcatagcacatacaacta-gt--acagtactt---- i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36344790 146 - 42659167 cagaagaattcctatcacctggtaacttccca-aatgttataatgtaacacatcactgccatgtttgtggtgatgctggtgtaaacaaacccatgctgccagtggtataaaagtata-cacatgcaactatgtacacagtacattatg i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e saiBol1.JH378157 8921003 1662 - 16357246 I a score=923245.000000 s hg38.chr22_GL383582v2_alt 140647 119 + 162811 cttgaaaataaactatgttactggtttacatatcctatgta------------------gaattctatg-ttatgtatactatgtattctacttataaaaa-tagttaactaaagctgg-------gtgtgggagcatgtgcctat s panTro5.chr22 28920211 119 + 37823149 cttgaaaataaactatgttactggtttacatatcctatgta------------------gaattctatg-ttatgtatactatgtattctacttataaaaa-tagttaactaaagctgg-------gtgtgggagcatgtgcctat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194758 119 + 50109623 cttgaaaataaactatgttactggtttacatatcctatgta------------------gaattctatg-ttatgtatactatgtattctacttataaaaa-tagttaactaaagctgg-------gtgtgggagcatgtgcctat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3217604 118 + 4464012 cttgaaaataaactatgttactggtttacatatcctatgta------------------gaattctatg-ttatgtatactatgtattctacttataaaaa-tagttaactaaagctgg-------gtgt-ggagcatgtgccttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106710073 119 - 115148730 ctcgaaaataaactatgttactggtttacatatcctatgta------------------gaattctatg-ttatggatactatatattctacttataaaaa-cagttaactaaagctgg-------gtgtgggagcatgtgcctgt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84329489 120 + 92844088 cttgataataaactatgttactggtttacatatcctatgtg------------------taattctata-ttatgtatactatgtattctacttataaaaattaagtaactacagctgg-------gtgtgggagcatgtgcctgt i rheMac8.chr10 C 0 I 642 s macFas5.chr10 87675854 120 - 96509753 cttgataataaactatgttactggtttacatatcctatgtg------------------taattctata-ttatgtatactatgtattctacttataaaaattaagtaactacagctgg-------gtgtgggagcatgtgcctgt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172824 120 - 13098629 cttgataataaactatgttactggtttacatatcctatgtg------------------taattctata-ttatgtatactatgtatcctacttataaaaattaagtAACTACAgctgg-------gtgtgggagcatgtgcctgt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4132669 120 - 4483953 cttgataataaactatgttactggtttacatatcctatgtg------------------taattctata-ttatgtatactatgtattctacttataaaaattaagtaactacagctgg-------gtgtgggagcatgtgcctgt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762853 120 + 33263144 cttgataataaactatgttactggtttacatatcctatgtg------------------taattctata-ttatgtatactatgtattctacttataaaaattaagtaactacagctgg-------gtgtgagagcatgtgcctgt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14043610 120 - 14338769 cttgataataaactatgttactggtttacatatgctgtgtg------------------taattctata-ttatgtatactatgtattctacttataaaaattaagtaactacagctgg-------gtgtgggagcatgtgcctgt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 982735 120 + 1946073 cttgataataaactatgttactggtttacatatcctatgtg------------------gaattctatg-ttatgtatactatgtattctacttataaaaattaagtaactagagctgg-------gtgtgggagcatgtgcctgt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2009182 116 - 2117846 ctt---aataaatcatgttactggtttaagtatcccatctg------------------gaattctatg-ttgtgtatactatgcattctacttataaaac-tagttaactaaaactgg-------atgtgggagcatgtgcctgt i calJac3.chrUn_GL286373 C 0 C 0 s aotNan1.NW_018512389v1 35200 113 - 704494 ------aataaatcatgttaccggtttacgtatcctatgtg------------------gaattctatg-ttgtgcatactatgcattctacttataaaaa-tagttaactaaaactgg-------atgtgggagcatgtgcctgt i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36344936 143 - 42659167 cttgataataaactatgttactagtttgtgtattctatgtagtctacatggatttatatgaattcaatgtttatgtatgctatatattctacttataagaa-aaattaactgaagctggcatagtagcg-ggtagggtgtgccta- i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I a score=422.000000 s hg38.chr22_GL383582v2_alt 140766 1 + 162811 a s panTro5.chr22 28920330 1 + 37823149 a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194877 1 + 50109623 a i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3217722 1 + 4464012 a i gorGor5.CYUI01015375v1 C 0 C 0 s otoGar3.GL873526 36345079 1 - 42659167 g i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 35313 0 - 704494 C e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I e calJac3.chrUn_GL286373 2009298 0 - 2117846 C e colAng1.NW_012115588v1 982855 0 + 1946073 C e manLeu1.NW_012102031v1 14043730 0 - 14338769 C e chlSab2.chr19 24762973 0 + 33263144 C e cerAty1.NW_011999588v1 4132789 0 - 4483953 C e macNem1.NW_012012688v1 7172944 0 - 13098629 C e macFas5.chr10 87675974 0 - 96509753 C e rheMac8.chr10 84329609 642 + 92844088 I e nomLeu3.chr7b 106710192 0 - 115148730 C a score=49595.000000 s hg38.chr22_GL383582v2_alt 140767 6 + 162811 agtcct s panTro5.chr22 28920331 6 + 37823149 agtcct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194878 6 + 50109623 agtcct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3217723 6 + 4464012 agtcct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106710192 6 - 115148730 agtcct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84330251 6 + 92844088 agtccc i rheMac8.chr10 I 642 C 0 s macFas5.chr10 87675974 6 - 96509753 agtcct i macFas5.chr10 C 0 I 643 s macNem1.NW_012012688v1 7172944 6 - 13098629 agtcct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4132789 6 - 4483953 agtcct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762973 6 + 33263144 agtcct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14043730 6 - 14338769 agtcct i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 982855 6 + 1946073 agtcct i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2009298 6 - 2117846 attcct i calJac3.chrUn_GL286373 C 0 C 0 s aotNan1.NW_018512389v1 35313 6 - 704494 attcct i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36345080 6 - 42659167 agttcc i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I a score=96139.000000 s hg38.chr22_GL383582v2_alt 140773 11 + 162811 agctactcagg s panTro5.chr22 28920337 11 + 37823149 agctactcagg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194884 11 + 50109623 agctactcagg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3217729 11 + 4464012 agctactcagt i gorGor5.CYUI01015375v1 C 0 I 315 s nomLeu3.chr7b 106710198 11 - 115148730 agctactcagg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84330257 11 + 92844088 agctactcggg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87676623 11 - 96509753 agctactcggg i macFas5.chr10 I 643 C 0 s macNem1.NW_012012688v1 7172950 11 - 13098629 ggctactcagg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4132795 11 - 4483953 ggctactcagg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762979 11 + 33263144 ggctactcagg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14043736 11 - 14338769 ggctactcagg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 982861 11 + 1946073 ggctactcagg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2009304 11 - 2117846 ggctactcagg i calJac3.chrUn_GL286373 C 0 C 0 s aotNan1.NW_018512389v1 35319 11 - 704494 ggctactcagg i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36345086 11 - 42659167 agctacttagg i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I a score=47195.000000 s hg38.chr22_GL383582v2_alt 140784 5 + 162811 aggct s panTro5.chr22 28920348 5 + 37823149 aggct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194895 5 + 50109623 aggct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3218055 5 + 4464012 aggct i gorGor5.CYUI01015375v1 I 315 C 0 s nomLeu3.chr7b 106710209 5 - 115148730 aggct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84330268 5 + 92844088 aggct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87676634 5 - 96509753 aggct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172961 5 - 13098629 aggct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4132806 5 - 4483953 aggct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24762990 5 + 33263144 aggct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14043747 5 - 14338769 aggct i manLeu1.NW_012102031v1 C 0 I 322 s colAng1.NW_012115588v1 982872 5 + 1946073 aggct i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2009315 5 - 2117846 aagct i calJac3.chrUn_GL286373 C 0 C 0 s aotNan1.NW_018512389v1 35330 5 - 704494 aagct i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36345097 5 - 42659167 aggct i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I a score=10500.000000 s hg38.chr22_GL383582v2_alt 140789 1 + 162811 g s panTro5.chr22 28920353 1 + 37823149 g i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194900 1 + 50109623 g i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3218060 1 + 4464012 g i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106710214 1 - 115148730 g i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84330273 1 + 92844088 g i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87676639 1 - 96509753 g i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7172966 1 - 13098629 g i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4132811 1 - 4483953 g i cerAty1.NW_011999588v1 C 0 I 322 s chlSab2.chr19 24762995 1 + 33263144 g i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14044074 1 - 14338769 g i manLeu1.NW_012102031v1 I 322 C 0 s colAng1.NW_012115588v1 982877 1 + 1946073 g i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2009320 1 - 2117846 g i calJac3.chrUn_GL286373 C 0 C 0 s aotNan1.NW_018512389v1 35335 1 - 704494 g i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36345102 1 - 42659167 g i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I a score=40912.000000 s hg38.chr22_GL383582v2_alt 140790 6 + 162811 aggca-g- s panTro5.chr22 28920354 6 + 37823149 aggca-g- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194901 6 + 50109623 aggca-g- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3218061 6 + 4464012 aggca-g- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106710215 7 - 115148730 aggcagg- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84330274 6 + 92844088 aggca-g- i rheMac8.chr10 C 0 I 1 s macFas5.chr10 87676640 6 - 96509753 aggca-g- i macFas5.chr10 C 0 I 1 s macNem1.NW_012012688v1 7172967 6 - 13098629 agaca-g- i macNem1.NW_012012688v1 C 0 I 2155 s cerAty1.NW_011999588v1 4133134 6 - 4483953 aggca-a- i cerAty1.NW_011999588v1 I 322 C 0 s chlSab2.chr19 24762996 6 + 33263144 agaca-g- i chlSab2.chr19 C 0 I 323 s manLeu1.NW_012102031v1 14044075 6 - 14338769 aggca-a- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 982878 6 + 1946073 agaca-g- i colAng1.NW_012115588v1 C 0 I 321 s calJac3.chrUn_GL286373 2009321 6 - 2117846 aggca-g- i calJac3.chrUn_GL286373 C 0 I 1 s aotNan1.NW_018512389v1 35336 6 - 704494 aggca-g- i aotNan1.NW_018512389v1 C 0 I 1989 s otoGar3.GL873526 36345103 7 - 42659167 aggca-gg i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I a score=116789.000000 s hg38.chr22_GL383582v2_alt 140796 29 + 162811 agaatcgcttgaacctgggaggtggaggt s panTro5.chr22 28920360 29 + 37823149 agaatcgctggaacctgggaggtggaggt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194907 29 + 50109623 agaatcgctggaacctgggaggtggaggt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3218067 29 + 4464012 agaatcacttgaacctgggaggtggaggt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106710222 27 - 115148730 aagatctcttgagcccaggacttcaag-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84330281 29 + 92844088 agaatggcgtgaacccaggaggcggagct i rheMac8.chr10 I 1 C 0 s macFas5.chr10 87676647 29 - 96509753 agaatggcgtgaacccaggaggcggagct i macFas5.chr10 I 1 C 0 s cerAty1.NW_011999588v1 4133140 29 - 4483953 agaattgcttgaacctgggaggtggagtt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24763325 29 + 33263144 agaattgcttgaacctgggaggtggagtt i chlSab2.chr19 I 323 C 0 s manLeu1.NW_012102031v1 14044081 29 - 14338769 agaattgcttgaacctgggaggtggagtt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 983205 29 + 1946073 agaatcgcttgaacctgggaagtggagtt i colAng1.NW_012115588v1 I 321 C 0 s calJac3.chrUn_GL286373 2009328 27 - 2117846 aagatttcctgcaccctagaattcaag-- i calJac3.chrUn_GL286373 I 1 C 0 s otoGar3.GL873526 36345110 29 - 42659167 aggatcatctgagcccaggagtttgagat i otoGar3.GL873526 C 0 I 504 e aotNan1.NW_018512389v1 35342 1989 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I e macNem1.NW_012012688v1 7172973 2155 - 13098629 I a score=245824.000000 s hg38.chr22_GL383582v2_alt 140825 76 + 162811 tgcagtgagccgagatcatgccactgcactccagtctgggcgacagagagagact--gtctcaaaaaaaaaaaccaaa s panTro5.chr22 28920389 74 + 37823149 tgcaatgagccgagatcatgccactgcactccagtctgggtgacggagagagact--gtctcaaaaaaaaa--ccaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41194936 76 + 50109623 tgcagtgagccgagatcatgccactgcactccagtctgggcgacagagagagact--gtctacaaaaaaaaaaccaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3218096 74 + 4464012 tgcagtgaaccgagatcatgccactgcactccagtctgggcgacagagagagact--gtctcaaaaaaaaa--ccaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106710249 41 - 115148730 -----------------------------tctagcctgggcaacatggcaagacc-aatctcaaaaaataa------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84330310 71 + 92844088 tgcagtgagctgagatccggccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaa------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87676676 71 - 96509753 tgcagtgagctgagatccggccactgcactccagcctgggcgacagagcaagactccgtctcaaaaaaaaa------- i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4133169 75 - 4483953 tgcagtgagctgaggtcatgctactgcactccagtctgggcgacacagagagact--gtctcaaaaaaaaa-cccaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24763354 70 + 33263144 tgcagtgagctgagatcatgccactgcactccagtctgcgcgacac----agact--gtctcaaaaaaaac--ccaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14044110 74 - 14338769 tgcagtgagctgagatcatgccactgcactccagtctgggcgacacagagagact--gtctcaaaaaaaac--ccaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 983234 75 + 1946073 tgcagtgagccgagatggtgccactgcactccagtctgggtgacacagagagact--gtcttaaaaaaaaa-cccaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2009355 46 - 2117846 -----------------------------tctagcctgggtaacatggcaagac---atctcaaaaaaataaataaaa i calJac3.chrUn_GL286373 C 0 I 1903 e aotNan1.NW_018512389v1 35342 1989 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36345139 504 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I e macNem1.NW_012012688v1 7172973 2155 - 13098629 I a score=67118.000000 s hg38.chr22_GL383582v2_alt 140901 22 + 162811 gcaaacaaacaa---aaga--cactgt s panTro5.chr22 28920463 22 + 37823149 gcaaacaaacaa---aaga--cactgt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41195012 22 + 50109623 gcaaacaaacaa---aaga--cactgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3218170 22 + 4464012 gcaaacaaacaa---aaga--cactgt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106710290 20 - 115148730 ----ataaataa---aaagttcactgt i nomLeu3.chr7b C 0 I 823 s rheMac8.chr10 84330381 24 + 92844088 -aaaaaaaaaaaaggaaga--cactgt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87676747 24 - 96509753 -aaaaaaaaaaaaggaaga--cactgt i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4133244 25 - 4483953 gcaaacaaacataagaaga--cactgt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24763424 25 + 33263144 gcaaacaaacataagaaga--cactgt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14044184 25 - 14338769 gcaaacaaacataagaaga--cactgt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 983309 22 + 1946073 gcaaacaaacat---aaga--cactgt i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512389v1 35342 1989 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36345139 504 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I e calJac3.chrUn_GL286373 2009401 1903 - 2117846 I e macNem1.NW_012012688v1 7172973 2155 - 13098629 I a score=619218.000000 s hg38.chr22_GL383582v2_alt 140923 166 + 162811 tatcataggagatgatagctccatgtgtgttactgaccctaaagaccttccagtgggccaagatgtgaagctggaagacagtgatattgattattctgaccctgtgtaggtttaggctaatgcatgtgtttgtgtcttagtttttaacaaaag-tgtttaaaaagtg s panTro5.chr22 28920485 166 + 37823149 tatcataggagatgatagctccatgtgtgttactgaccctaaagaccttccagtgggccaagatgtgaagctggaagacagtgatattaattattctgaccctgtgtaggtttaggctaatgcatgtgtttgtgtcttcgtttttaacaaaag-tgtttaaaaagtg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41195034 166 + 50109623 tatcataggagatgatagctccatgtgtgttactgaccctaaagaccttccagtgggccaagatgtgaagctggaagacagtgatattaattattctgaccctgtgtaggtttaggctaatgcatgtgtttgtgtcttagtttttaacaaaag-tgtttaaaaagtg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3218192 166 + 4464012 tatcataggagatgatagctccatgtgtgttactgaccctaaagaccttccagtgggccaagatgtgaagctggaagacagtgatattgattattctgaccctgtgtaggtttaggctaatgcatgtgtttatgtcttagttttcaacaaaag-tgtttaaaaagtg i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84330405 158 + 92844088 tatcataggagatgacagctccatgtgtgttactgaccctaaagacctcccagtgggccaagatgtaaagctggaagacagtgatactgattattctggccctgtacaggtttaggctaatgcatgtatttgtgtcttagtttttaacaaaag-tgttt-------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87676771 158 - 96509753 tatcataggggatgacagctccatgtgtgttactgaccctaaagacctcccagtgggccaagatgtaaagctggaagacagtgatactgattattctggccctgtacaggtttaggctaatgcatgtgtttgtgtcttagtttttaacaaaag-tgttt-------- i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4133269 158 - 4483953 tatcataggggatgacagctccatgtgtgttactgaccctaaagacctcccagtgggccaagatgtaaagctggaagacagtgatactgattattctggccctgtacaggtttaggctaatgcatatgtttgtgtcttagtttttaacaaaag-tgttt-------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24763449 158 + 33263144 tatcataggggatgacagctccatgtgtgttactgaccctaaagacctcccagtgggccaagatgtgaagctggaagacagtgatactgattattctggccctgtacaggtttaggctaatgcatgtgcttgtgtcttagtttttaacaaaag-tgttt-------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14044209 158 - 14338769 tatcataggggatgacagctccatgtgtgttactgaccctaaagacctcccagtgggccaagatgtaaagctggaagacagtgatactgattattctggccctgtacaggtttaggctaatgcatgtgtttgtgtcttagtttttaacaaaag-tgttt-------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 983331 159 + 1946073 tatcataggggatgacagcttcatgtgtgttactgaccctaaagatctcccagtgggccaagatgtgaagctggaagacagtgatactgattattctgaccctgtacaggtttaggctaatgcatgtgtttgtgtcttagcttgtaacaaaagttgttt-------- i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512389v1 35342 1989 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36345139 504 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I e calJac3.chrUn_GL286373 2009401 1903 - 2117846 I e macNem1.NW_012012688v1 7172973 2155 - 13098629 I e nomLeu3.chr7b 106710310 823 - 115148730 I a score=2643115.000000 s hg38.chr22_GL383582v2_alt 141089 658 + 162811 aaaaaataaaaaataaaaaatatttaaata---tggctcggtgaggtggctcacgtctgtaatcccagtac-tttggaaggccaaggtgggtggatcacatggggtctggaattccagaccagcctggccaacacggtgaaaccccgtctctact--aaa---a---aaaacacaaaaattagccaggtgtaatggcgtgtgcctgtagtaccaactacttgggaggctaaggcaggagaatcgcttgaactcgcgacatggaggctgcagtgagctgagaccgcaccattccactccaacctgggcgacacagcaagactctgtctcaaataatgat-aataaatagaaaaaaaagctt-----ataaagtggctaggcctggtggctcacacctacaattccagaacttttgggaggcagaggagaaaggattgcttgatgccaggagtttgag---------------------------------accagcctgggcaacatagcatgactc---------------------------------------------------cagctctataaaaact-aaaaaaacgtagccaagcacggtggtatgcacctgtagtcctagctactcaggaggcttaagtgaggg-ttgcttgagcccaggagtttgaggttacagggagctatgactgtgccactgcactccagcctggaacagagtaagaccttatctctaagagtaattaataataatcat-----a s panTro5.chr22 28920651 658 + 37823149 aaaaaataaaaaataaaaaatatttaaata---tggctcggtgaggtggctcacatctgtaatcccagtac-tttggaaggccaaggtgggtggatcacatggggtcaggaattccagaccagcctggccaacacggtgaaaccccgtctctact--aaa---a---aaaacacaaaaattagccaggtgtgatggcgtgtgcctgtagtaccaactacttgggaggctaaggcaggagaatcgcttgaactcgcgacatggaggctgcagtgagctgagaccgcaccattccactccaacctgggcgacacagcaagactctgtctcaaataatgat-aataaatagaaaaaaaagctt-----ataaagtggctaggcctggtggctcacacctacaattccagaacttttaggaggcagaggagaaaggattgcttgatgccaggagtttgag---------------------------------accagcctgggcaacacagcatgactc---------------------------------------------------cagctctataaaaact-aaaaaaacgtagccaagcacggtggtatgcacctgtagtcctagctactcaggaggcttaagtgaggg-ttgcttgagcccaggagtttgaggttacagggagctatgactgtgccactgcactccagcctggaacagagtaagaccttatctttaagagtaattaataataatcat-----a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41195200 658 + 50109623 aaaaaataaaaaat-aaaaatatttaaata---tggctcggtgaggtggctcacgtctgtaattccagtac-tttggaaggccaaggtgggtggatcacatggggtcaggaattccggaccagcctggccaacacggtgaaaccccgtctctacttaaaa---a---aaaacacaaaaattagccaggtgtgatggcgtgtgcctgtagtaccaactacttgggaggctaaggcaggagaatcgcttgaactcgcgacatggaggctgcagtgagctgagaccgcaccattccactccaacctgggcgacacagcaagactctgtctcaaataatgat-aataaatagaaaaaaaagctt-----ataaagtggctaggcctggtggctcacacctacaattccagaacttttaggaggcagaggagaaaggattgcttgatgccaggagtttgag---------------------------------accagcctgggcaacataccatgactc---------------------------------------------------cagctctataaaaact-aaaaaaacgtagccaagcacggtggtatgcacctgtagtcctagctactcaggaggcttaagtgaggg-ttgcttgagcccaggagtttgaggttacagggagctatgactgtgccactgcactccagcctggaacagagtaagaccttatctctaagagtaattaataataatcat------ i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3218358 663 + 4464012 aaaaaataaaaaatgaaaaatatttaaata---tgggtcagtgcggtggctcacatctgtaatcccagtac-tttggaaggccaaggtgggtggatcacacagggtcaggaattccagaccagcctggccaacacggtgaaaccccgtctctact--aaa---a---aaaccacaaaaattagccaggtgtgatggagtgtgcctgtagtaccaactacttgggagcctaaggcaggagaatcgcttgaactcgagacatggaggctgcagtgagctgagaccgcaccattccactccaacctgggcaacacagcaagactctgtctcaaataatgat-aataaatagaaaaaaaagctt-----ataaagtggctaggcctggtggctcacacctacaattccagaacttttgggaggcaaaggagaaaggattgcttgatgccaggagtttgag---------------------------------accagcctgggcaacatagcatgactc---------------------------------------------------cagctctataaaaactaaaaaaaacatagccaagcacagtggtatgcacctgtagtcctagctactcaggaggcttaagtgaggg-ttgcttgag-ccaggagtttgaggttacagggagctatgactgtgccactgcactccagcctggaacagagtaagaccttatctctaagagtaattaataataatcataaaaga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106711133 696 - 115148730 aataaatagaaaaaaaaagcttatagaataaagtggctaggcctggtggctcacacctacaattgcagaacttttgggaggcagaggagaaaggattgcttgatgctaggagtttgagaccagcctgggcaacgcagcatgactccagctctaca--caaacta---aaaaaacatagccaggccgggcgcggtggctcacgcttgtaatcccagcactttcagaggccgaggcgggcagatcac--gaggtcaagagatcgagac-------------------------------------------cacggtgaaaccccgtcgctactaa--------aaatacaaaaaaa------------aaattagccgggcgtggtggcgggcacctgtagtcccagctactcggagaggctgaggcaggagaatggcgtgaacccgggaggcggagtttgcacagtgagccgagattgcgccactgcactccagcctgggcgacagagcgagactttgtttaaaaaaaaaaaaaaaaaaaaaaaaaaacaaaaaaaacaaaacaaaacaaaacaacaacaacaaaaaaaaacgtagccaagcatggtggcatgcacctgtagtcctagctactcaggaggctgaagtgaggg-ttgcttgagtccagcagtttgaggttacagggagctatgactgcaccactgcactccagcctggaacagagtaagactttatctctaaaagtaattaataatcatcataaaaga i nomLeu3.chr7b I 823 C 0 s rheMac8.chr10 84330563 655 + 92844088 taaaaataaaaaataa------tttaaata---tggctgggtgcggtggctcatgtctataatcccagtac-tttgggaggccgaggtgggtggatcacctgaggtcaggagttccagaacagcctggccaatatggtgaaactccgtctctact--aaa---aaacaaaatacaaaaattagccaggtgtgatggcgtgtgcctgtagtaccagctactcaggaggctaaggcaggagaatcgcttgagcccacgacatggaggctgcagtgagctgagatcacaccattccactctagcctgggcgacacagcaagactctgtctcatataataat-aataaatagaaaaaa--gcttatagaataaagtggctaggcctggtggctcacacctacaattccagaaattttgggaggcagaggagaaaggactgcttgatgccagaagtttgag---------------------------------accagcctgggcaatgcagcatgattc---------------------------------------------------cagctccacaaaaaat-aaaacaacgtagccaagcatggtggcatgcacctgtagtc----ctactcaggaggctgaagtgaggg-ttgcttgagcccaggagtttgaggtcacagggagctatgactgtaccactgcactccagcctggaacagagtgagaccttatctctaagag----taacaacaatcataaaaga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87676929 655 - 96509753 taaaaataaaaaataa------tttaaata---tggctgggtgcggtggctcatgtctataatcccagtac-tttgggaggccgaggtgggtggatcacctgaggtcaggagttccagaacagcctggccaatatggtgaaactccgtctctact--aaa---aaacaaaatacaaaaattagccaggtgtgatggcgtgtgcctgtagtaccagctactcaggaggctaaggcaggagaatcgcttgagcccacgacatggaggctgcagtgagctgagatcacaccattccactctagcctgggcgacacagcaagactctgtctcatataataat-aataaatagaaaaaa--gcttatagaataaagtggctaggcctggtggctcacacctacaattccagaaattttgggaggcagaggagaaaggactgcttgatgccagaagtttgag---------------------------------accagcctgggcaatgcagcatgattc---------------------------------------------------cagctccacaaaaaat-aaaacaacgtagccaagcatggtggcatgcacctgtagtc----ctactcaggaggctgaagtgaggg-ttgcttgagcccaggagtttgaggtcacagggagctatgactgtaccactgcactccagcctggaacagagtgagaccttatctctaagag----taacaacaatcataaaaga i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4133427 656 - 4483953 aaaaaataaaaaataa------tttaaata---tggctgggtgtggtggctcatgtctataatcccagtac-tttgggaggccgaggtgggtggatcacatgaggtcaggagttccagaacagcctggccaatatggtgaaactccgtcgctact--aaa---aaacaaaataaaaaaattagccaggtgtgatggcgtgtgcctgtagtaccagctactcaggaggctaaggcaggagaatcgcttgagcccacgacatggaggctgcagtgagccgagatcacaccattccactccagcctggacgacacagcaagactctgtctcatataataat-aataaatagaaaaaa--gcttatagaataaagtggctaggcctggtggctcacacctacaattccagaacttttgggaggcagaggagaaaggactgcttgatgccagaagtttgag---------------------------------accagcctgggcaatgcagcatgattc---------------------------------------------------cagctccacaaaaaat-aaaacaacgtagccaagcatggtggcatgcacctgtagtc----ctactcaggaggctgaagtgagggtttgcttgagcccaggagtttgaggtcacagggagctatgactgtaccactgcactccagcctggaacagagtgagaccttatctctaagag----taacaacaatcataaaaga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24763607 655 + 33263144 aaaaaataaaaaataa------tttaaata---tggctgggtgtggtggctcatgtctataatcccagtac-tttgggaggctgaggtgggtggatcacctgaggtcaggagttccagaacagcctggccaatatggtgaaactccgtctctact--aaa---aaacaaaatacaaaaattagccaggtgtgatggcgtgtgcctgtagtaccagctactcaggaggctaaggcaggagaatcgcttgaacccacgacatggaggctgcagtgagccgagatcacaccactccactccagcctgggcgacacagcaagactctgtctcatataataat-aataaatagaaaaaa--gcttatagaataaagtggctaggcctggtggctcacacctacaattccagaacttttgggaggcagaggagaaaggactgcttgatgccaggagtttgag---------------------------------accagcctgggcaatgcagcatgattc---------------------------------------------------cagctccacaaaaaat-aaaaaaacgtagccaagcatggtggcatgcacctgtagtc----ctactcaggaggctgaagtgaggg-ttgcttgagcccaggagtttgaggtcacagggagctatgactgtaccactgcactccagcctggaacagagtgagaccttatctctaagag----taacaacaatcataaaaga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14044367 655 - 14338769 aaaaaataaaaaataa------tttaaata---tggctgggtgcggtggctcatgtctataatcccactac-tttgggaggccgaagtgggtggatcacatgaggtcaggagttctagaacagcctggccaatatggtgaaactccgtctctact--aaa---aaacaaaataaaaaaattagccaggtgtgatggcgtgtgcctgtagtaccagctactcaggaggctaaggcaggagaatcgcttgagcccacgacatggaggctgcagtgagccgagatcacaccattccactccagcctgggcgacacagcaagactctgtctcatataataat-aataaatagaaaaaa--gcgtatagaataaagtggctaggcctggtggctcacacctacaattccagaacttttgggaggcagaggagaaaggactgcttgatgccagaagtttgag---------------------------------accagcctgggcaatgcagcatgattc---------------------------------------------------cagctccacaaaaaat-aaaacaacgtagccaagcatggtggcatgcacctgtagtc----ctactcaggaggctgaagtgaggg-ttgcttgagcccaggagtttgaggtcacagggagctatgactgtaccactgcactccagcctggaacagagtgagaccttatctctaagag----taacaacaatcataaaaga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 983490 655 + 1946073 aaaaaataaaaaataa------tttaaata---tggctgagtgcggtggctcatgtctataatcccagtac-tttgggaggccaaggtgggtggatcacctgaggtcaggagttccagaacagcctggccaatatggtaaaatcccgtctctact--aaa---aaacaaaatacaaaaattagccaggtatgatggcgtgtgcctgtagtaccagctactcaggaggctaaggcaggagaatcgcttgaacccacaacatggaggctgtagtgagctgagatcacaccattccactccagcctgggcgacacagcaagactctgtctcatataataataaaaaaatagaaaaaa--gcttatagaataaagtggttaggcctggtggctcatatctacaattccagaacttttgggaggcagaggagaaaggactgcttgatgccaggagtttgag---------------------------------acaagcctgggcaatgtagcatgattc---------------------------------------------------cagctccacaaaaaat-aaaaaaacatagccaagcatggtggcatgcacctgtagtc----ctactcaggaggctgaagtgaggg-ttgcttgagcccaggagtttgaggtcacagggagctatgactgtaccactgcactccagcctggaacagagtgagaccttatctctaagag----taataacaatcataaaag- i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512389v1 35342 1989 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36345139 504 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I e calJac3.chrUn_GL286373 2009401 1903 - 2117846 I e macNem1.NW_012012688v1 7172973 2155 - 13098629 I a score=656829.000000 s hg38.chr22_GL383582v2_alt 141747 140 + 162811 aaaaagtttatagaataacacaatgac-agaaaatatttttgaacagctgcacaatgtatttgtggtttaagctaagtgttattac--aagagtcaaaaggtt-acaaa-tttt---taaagtttttaaagt--aaaaaagttacagtaa s panTro5.chr22 28921309 131 + 37823149 aaaaagtttatagaataacacaatgac-agaaaatatttttgaacagctgcacaatgtatttgtggcttaagctaagtattattac--aagagtcaaaaggtt-acaaa-tttt---taaagt-----------aaaaaagttacaataa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41195858 139 + 50109623 aaaaagtttatagaataacacaatgac-agaaaatatttttgaacagctgcacaatgtatttgtggcttaagctaagtattattac--aagagtcaaaaggtt-acaaa-tttt---taaagtttttaaag---taaaaagttacaataa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3219021 139 + 4464012 aaaaggtttatagaataacacaatgac---aaaatatttttgaacagctgcacaatgtatttgtggtttaagctaagtgttattac--aagagtcaaaaggtt-acaaattttt---taaagtttttaaagt--aaaaaagttacagtaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106711829 143 - 115148730 aaaaagtttatagaataacacaatgac-agaaaatatttttgaacagctgcacaatgtgtttgtggtttaagctaagtgttattac--aagagtcaaaaggtt-acaaa-ttttttataaagtttttaaagt--aaaaaagttacagtaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84331218 139 + 92844088 aaaaagtttatagaataacacaaagct---aaaatatttttgaacagttgcacaatgtgtttgtggtttaagctaagtgttattac--aagagtcaaaaagtt-aaaaaatttt---taaagtttttaaagt--aaaaaagttacagtaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87677584 139 - 96509753 aaaaagtttatagaataacacaaagct---aaaatatttttgaacagttgcacaatgtgtttgtggtttaagctaagtgttattac--aagagtcaaaaagtt-aaaaaatttt---taaagtttttaaagt--aaaaaagttacagtaa i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4134083 139 - 4483953 aaaaagtttatagaataacacaaagct---aaaatatttttgaacagttgcacaatgtgtttgtggtttaagctaagtgttattac--aagagtcaaaacgtt-aaaaaatttt---taaagtttttaaagt--aaaaaagttacagtaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24764262 140 + 33263144 aaaaagtttatagaataacacaaagat---aaaatatttctgaactgctgcacaatgtgtttgtggtttaagctaagtgttactac--aagagtcaaaacgttaaaaaaatttt---taaagtttttaaagt--aaaacagttacagtaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14045022 139 - 14338769 aaaaagtttatagaataacacaaagct---aaaatatttttgaacagttgcacaatgtgtttgtggtttaagctaagtgttattac--aagagtcaaaacgtt-aaaaaatttt---taaagtttttaaagt--aaaaaagttacagtaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 984145 136 + 1946073 -aaaagtttatagaatagcacaaagac---aaaatatttttgaacagctgcacaatgcgtttgtggtttaagctaagtgttattcc--aagagtcaaaacgtt-aaaaaaattt---taaagtttttaaagt--aaa--agttacagtaa i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36345643 146 - 42659167 aaaaagcttctagaagaataggatataaaaaaaatatttttgtacagctgtataatctttttgtggtttaagataagtgttattacaaaagagtcaaaaattt-aaaaaagcaa---aaaagtttacaaagttaaaaaaagttacagtaa i otoGar3.GL873526 I 504 I 30 e aotNan1.NW_018512389v1 35342 1989 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I e calJac3.chrUn_GL286373 2009401 1903 - 2117846 I e macNem1.NW_012012688v1 7172973 2155 - 13098629 I a score=124363.000000 s hg38.chr22_GL383582v2_alt 141887 35 + 162811 tctggccagggactggtggctcatgcctgtaatcc s panTro5.chr22 28921440 35 + 37823149 tctggccgggcaccggtggctcatgcctgtaatcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41195997 35 + 50109623 tctggccgggcaccggtggctcatgcctgtaatcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3219160 35 + 4464012 tctggctgggcaccggtggctcatgcctgtaatcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106711972 35 - 115148730 tctggccgggcaccagtggctcacgcctgtaatcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84331357 32 + 92844088 tctggccgggcgc-ggtggctcacgcctgtaa--t i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87677723 32 - 96509753 tctggccaggcgc-ggtggctcacgcctgtaa--t i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4134222 32 - 4483953 tctggccaggcgc-ggtgactcacgcctgtaa--t i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24764402 32 + 33263144 tctggccgggcgt-ggtggctcacacctgtaa--t i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14045161 32 - 14338769 tctggccgggcgc-ggtggctcacgcctgtaa--t i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 984281 34 + 1946073 tctggccgggcac-ggtggctcacgcctgtaatct i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512389v1 35342 1989 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36345789 30 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I e calJac3.chrUn_GL286373 2009401 1903 - 2117846 I e macNem1.NW_012012688v1 7172973 2155 - 13098629 I a score=956627.000000 s hg38.chr22_GL383582v2_alt 141922 207 + 162811 cagcattttgagaggcccaggcgggtggatcacaaggtcagcagatcaagaccatcctggctaatacggtgaaaccccgtctctactaaaaatac-aaaaaattagccaggtgtggtggcgggc----acctg--tagtcccagctactcgagaggctgaggcagaagaatgacgtgaacccgggaggcggagcttgcagtgagccaagatcaa s panTro5.chr22 28921475 207 + 37823149 cagcattttgagaggcccaggcgggtggatcacaaggtcagcagatcaagaccatcctggctaatacggtgaaaccccgtctctactaaaaatac-aaaaaattagccaggtgtggtggcgggc----acctg--tagtcccagctactcgggaggctgaggcagaagaatgacgtgaacccgggaggcggagcttgcagtgagccgagatcaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196032 207 + 50109623 cagcattttgagaggcccaggcgggtggatcacaaggtcagcagatcaagaccatcctggctaatacggtgaaaccccgtctctactaaaaatac-aaaaaattagccaggtgtggtggcgggc----acctg--tagtcccagctactcgggaggctgaggcagaagaatgacgtgaacccgggaggcggagcttgcagtgagccgagatcaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3219195 208 + 4464012 cagcattttgagaggcccaggcgggtggatcacaaggtcagcagatcaagaccaccctggctaatacggtgaaaccccatctctactaaaaatacaaaaaaattagccaggtgtggtagcgggc----acctg--tagtcccagctactcgggaggctgaggcagaagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712007 207 - 115148730 cagcattttgagaggccgaggcgggtggatcacaaggtcagcagatcaagaccatcctggctaatacggtgaaacaccgtctctactaaaaatac-aaaaaattagccaggtgtggtggcgggc----gcctg--tagtcccagctactcaggagactgaggcagaagaatggggtgaacctgggaggcggagcttgcagtgagccgagatcaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84331389 207 + 92844088 caacactttgagaggccgaggcaggtggatcacaaggtcaggagatcgagaccatcctggctaatatggtgaaaccctgtctctactaaaaacac-aaaaaattagccaggcgtggtggtgggc----gcctg--tagtccaagctacttgggaggctgaggcaggagactggtatgaacccgggaggtggagcttgtagtgagccaagattgc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87677755 207 - 96509753 caacactttgagaggccgaggcaggtggatcacaaggtcaggagatcgagaccatcctggctaatatggtgaaaccctgtctctactaaaaacac-aaaaaattagccaggcgtggtggtgggc----gcctg--tagtccaagctacttgggaggctgaggcaggagactggtatgaacccgggaggtggagcttgtagtgagccaagattgc i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4134254 207 - 4483953 caacactttgagaggccgaggcaggtggatcacaaggtcaggagatcgagaccatcctggctaatatggtgaaaccctgtctctactaaaaacac-aaaaaattagccaggcgtggtggtgggc----gcctg--tagtccaagctacttgggaggctgaggcaggagactggtatgaacccaggaggtggagcttgtagtgagccaagattgt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24764434 205 + 33263144 caacactttgagaggccgaggcaggtggatcacaaggtcaggagatcgagaccatcctggctaatatggtgaaacc--gtctctactaaaaacac-aaaaaattagccaggcgtggtgatgggc----gcctg--tagtccaagctacttaggaggctgaggcaggagactggtatgaacccgggaggtggagcttgtagtgagccaagattgc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14045193 207 - 14338769 caacactttgagaggccgaggcaggtggatcacaaggtcaggagatcgagaccatcctggctaatatggtgaaaccctgtctctactaaaaacat-aaaaaattagccaggcgtggtggtgggc----gcctg--tagtccaagctacttgggaggctgaggcaggagactggtatgaacccaggaggtggagcttgtagtgagccaagattgc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 984315 207 + 1946073 caacactttgagaggccgaggcaggtggatcacaaggtcaggagatcgagaccatcctggctaatatggtgaaactctgtctctactaaaaatac-aaaaaattagccaggcgtggtggcgggc----acctg--tagtccaagctacttgggaggctgaggcaggagaatggtataaacccgggaggtggagcttgtagtgagccaagattgc i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36345819 153 - 42659167 -aaaaatttaaataggctcggcgcctgtagcacag----------------------tggtta-------------cggtgccagccacatacac-caagac--------------tggtgggttcaaacctggccggggccagctacctgggaggctgaggcaagaaaatcacttgagcccaagagtttgcagttgctgtgat---------- i otoGar3.GL873526 I 30 C 0 e aotNan1.NW_018512389v1 35342 1989 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e saiBol1.JH378157 8921003 1662 - 16357246 I e calJac3.chrUn_GL286373 2009401 1903 - 2117846 I e macNem1.NW_012012688v1 7172973 2155 - 13098629 I a score=212487.000000 s hg38.chr22_GL383582v2_alt 142129 46 + 162811 gccaccgcactccagcctgggcgaca-gagagagac---tccgtctcaaa s panTro5.chr22 28921682 46 + 37823149 gccaccgcactccagcctgggcaaca-gagagagac---tccgtctcaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196239 46 + 50109623 gccaccgcactccagcctgggcgaca-gagagagac---tccgtctcaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3219403 46 + 4464012 gccaccgcactccagcctgggcgaca-gagagagac---tctgtctcaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712214 46 - 115148730 gccaccgcattccagcctgggcgaca-gagcgagac---tctgtctcaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84331596 45 + 92844088 gccactgcactccagcctgggcaaca-----gagactcgtccgtctcaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87677962 45 - 96509753 gccactgcactccagcctgggcaaca-----gagactcgtccgtctcaaa i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4134461 45 - 4483953 gccactgcactccagcctgagcaaca-----aagactcgtctgtctcaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24764639 49 + 33263144 accactgcactccagcctgggcgaca-gagcaagactcgtccgtctcaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14045400 40 - 14338769 accactgcactccagcctgagcaa-------gagactcatccgtctc--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 984522 49 + 1946073 gccactgcactccagcctaggcgaca-gagcaagattcgtccgtctcaaa i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8922665 47 - 16357246 gccattgcactccagcctgggtaacaagagcgaaac---tccgtctcaaa i saiBol1.JH378157 I 1662 C 0 s otoGar3.GL873526 36345972 46 - 42659167 gccatggcactctaccaagggcgacg-tagtatgac---actgtctcaga i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 35342 1989 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e calJac3.chrUn_GL286373 2009401 1903 - 2117846 I e macNem1.NW_012012688v1 7172973 2155 - 13098629 I a score=6552.000000 s hg38.chr22_GL383582v2_alt 142175 2 + 162811 aa s panTro5.chr22 28921728 2 + 37823149 aa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196285 2 + 50109623 aa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3219449 2 + 4464012 aa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712260 2 - 115148730 aa i nomLeu3.chr7b C 0 C 0 s macNem1.NW_012012688v1 7175128 2 - 13098629 aa i macNem1.NW_012012688v1 I 2155 C 0 s chlSab2.chr19 24764688 2 + 33263144 aa i chlSab2.chr19 C 0 C 0 s saiBol1.JH378157 8922712 2 - 16357246 aa i saiBol1.JH378157 C 0 C 0 s otoGar3.GL873526 36346018 2 - 42659167 aa i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 35342 1989 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I e calJac3.chrUn_GL286373 2009401 1903 - 2117846 I e colAng1.NW_012115588v1 984571 0 + 1946073 C e manLeu1.NW_012102031v1 14045440 0 - 14338769 C e cerAty1.NW_011999588v1 4134506 0 - 4483953 C e macFas5.chr10 87678007 0 - 96509753 C e rheMac8.chr10 84331641 0 + 92844088 C a score=35948.000000 s hg38.chr22_GL383582v2_alt 142177 5 + 162811 aaaaa s panTro5.chr22 28921730 5 + 37823149 aaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196287 5 + 50109623 aaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3219451 5 + 4464012 aaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712262 5 - 115148730 aaaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84331641 5 + 92844088 aaaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87678007 5 - 96509753 aaaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7175130 5 - 13098629 aaaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4134506 4 - 4483953 -aaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24764690 5 + 33263144 aaaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14045440 5 - 14338769 aaaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 984571 3 + 1946073 --aaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2011304 5 - 2117846 aaagt i calJac3.chrUn_GL286373 I 1903 C 0 s saiBol1.JH378157 8922714 4 - 16357246 -aaaa i saiBol1.JH378157 C 0 C 0 s otoGar3.GL873526 36346020 5 - 42659167 aaaaa i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 35342 1989 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1404244 2162 - 1807191 I a score=593612.000000 s hg38.chr22_GL383582v2_alt 142182 79 + 162811 aaaaaa----------------gtt-acagt-aatctaaggttaataatatcaaaacaagaaaactttaaaa---------aataaatttagtgtagtccaaatgt s panTro5.chr22 28921735 81 + 37823149 aaaaaa--------------aagtt-acagt-aatctaaggttaataatatcaaaacaagaaaactttaaaa---------aataaatttagtgtagtccaaatgt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196292 86 + 50109623 aaaaaa----------aaaaaagttaacagt-aatctaaggttaataatatcaaaacaagaaaactttaaaa---------aataaatttagtgtagtccaaatgt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3219456 86 + 4464012 aaaaaa----------aaaaaagct-acagtaaatctaaggttaataatatcaaaacaagaaaacttaaaaa---------aataaatttagtgtagtccaaatgt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712267 95 - 115148730 gaaagaaaaaagaaagaaaaaaagt-acagt-aatctaaggttaataatatcaaaacaagaaaacttttaaa---------aataaatttagtgtagcccaaatgt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84331646 79 + 92844088 aaaata----------------gtt-acagt-aatctaaggttaataatactgaaacaagaaaacttttaaa---------cataaatttagtgtagcccaaatgt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87678012 79 - 96509753 aaaaaa----------------gtt-acagt-aatctaaggttaataatactgaaacaagaaaacttttaaa---------cataaatttagtgtagcccaaatgt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7175135 79 - 13098629 aaaaaa----------------gtt-acagt-aatctaaggttaataatactgaaacaagaaaacttttaaa---------cataaatttagtgaagcccaaatgt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4134510 79 - 4483953 aaaaaa----------------gtt-acagt-aatctaaggttaataatactgaaacaagaaaacttttaaa---------cataaatttagtgtagcccaaatgt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24764695 79 + 33263144 aaaaaa----------------gtt-acagt-aatctaaggttaataatactgaaacaagaaaacttttaaa---------cataaatttagtgtagcccaaatgt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14045445 79 - 14338769 aaaaaa----------------gtt-acagt-aatctaaggttaataataccgaaacaagaaaacttttaaa---------cataaatttagtgtagcccaaatgt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 984574 76 + 1946073 aaaaaa----------------ctt-acagt-aatctaaggttaataatattgaaac---aaaacttttaaa---------cataaatttagtgtagcccaaatgt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2011309 76 - 2117846 aaaaaa----------------gtt-acagt-aatctaaggt---taatactgaaacaaggaaacttttaaa---------aataaatttagtgtagcctaaatgt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8922718 77 - 16357246 aaacaa----------------gtt---tat-aaaataagg------atacaataacagaaaatattttgaacagctgcacaatatgtc---tgtggtttaagtat i saiBol1.JH378157 C 0 I 88 s cebCap1.NW_016107750v1 1406406 75 - 1807191 aaaaaa----------------gtt-acagt-aatctgaagt---taatactgaaacaaggaaacttttaaa---------aataaatttagtgtag-ctaaatgt i cebCap1.NW_016107750v1 I 2162 C 0 s aotNan1.NW_018512389v1 37331 76 - 704494 aaaaaa----------------gtt-acagt-aatctaaggt---taatactgaaacaaggaaacttttaaa---------aataaatttagtgtagcctaaatgc i aotNan1.NW_018512389v1 I 1989 C 0 s otoGar3.GL873526 36346025 37 - 42659167 ---------------------------------------------------------aaaaaaaattt---a---------aataaatttagtgcagcctaagtgt i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I a score=380670.000000 s hg38.chr22_GL383582v2_alt 142261 50 + 162811 acagtg-tttatac-atctacagtagtgtgcagtaacgtcctgggcctttac s panTro5.chr22 28921816 50 + 37823149 gcagtg-tttatac-atctacagtagtgtgcagtaacgtcctgggcctttac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196378 50 + 50109623 acagtg-tttatac-atctacagtagtgtgcagtaacgtcctgggcctttac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3219542 50 + 4464012 acagtg-tttatac-atctacagtagtgtgcagtaacgtcctgggcctttac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712362 50 - 115148730 acagtg-tttatac-atctacagcagtatgcagtaacgtcctgggccttcac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84331725 51 + 92844088 acagtg-ttgatacaacctacagtagtgtagagtaacatcctgggccttcac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87678091 51 - 96509753 acagtg-ttgatacaacctacagtagtgtacagtaacatcctgggccttcac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7175214 51 - 13098629 acagtg-ttgatacaacctacagtagtgtacagtaacatcctgggccttcac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4134589 51 - 4483953 acagtg-tttatacaacctacagtagtgtacagtaacatcctgggccttcac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24764774 51 + 33263144 acagtg-tttatacaacctacagtagtgtacagtaacatcctgggccttcac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14045524 51 - 14338769 acagtg-tttatacaacctacagtagtgtacagtaacatcctgggccttcac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 984650 51 + 1946073 acagtg-tttatacaacctacagtagtgtacagtaacatcctgggccttcac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2011385 43 - 2117846 acagtg-----tac-atct---gtagtgtacagtaatgtcctaggccatcat i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1406481 50 - 1807191 acaatg-ttaataa-atctacggtagtgtacagtaatgtcctaggccatcat i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 37407 50 - 704494 atagtg-ttaataa-atctatggtagtgtacagtaatgtcctaggccatcat i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36346062 49 - 42659167 atagtattttaaaaagtccacagtcgt---tagtaatgtcatactcactcac i otoGar3.GL873526 C 0 I 77 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e saiBol1.JH378157 8922795 88 - 16357246 I a score=177427.000000 s hg38.chr22_GL383582v2_alt 142311 36 + 162811 cttcattcaccattcactcactgactcacccagaac s panTro5.chr22 28921866 36 + 37823149 cttcattcaccattcactcactgactcacccagaac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196428 36 + 50109623 cttcattcaccattcactcactgactcacccagaac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3219592 36 + 4464012 cttcattcactattcactcactgactcacccagaac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712412 36 - 115148730 tttcactcaccattcactcactgactcaccaagagc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84331776 25 + 92844088 -----------attcactcaccgactcacccagagc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87678142 25 - 96509753 -----------attcactcaccgactcacccagagc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7175265 25 - 13098629 -----------attcactcaccgactcacccagagc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4134640 25 - 4483953 -----------attcactcaccgactcacccagagc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24764825 21 + 33263144 -----------attcactcaccgact----cagagc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14045575 25 - 14338769 -----------attcactcaccgactcacccagagc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 984701 25 + 1946073 -----------attcactcaccgactcacccagagc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2011428 30 - 2117846 --tcactcaccactccctcact----cacccacagc i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1406531 32 - 1807191 --tcactcaccactccctcactga--cacccacagc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 37457 34 - 704494 --tcactcactactccctcactgactcacccacagc i aotNan1.NW_018512389v1 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346111 77 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e saiBol1.JH378157 8922795 88 - 16357246 I a score=52323.000000 s hg38.chr22_GL383582v2_alt 142347 9 + 162811 aacttc-ctt s panTro5.chr22 28921902 9 + 37823149 aacttc-cgt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196464 9 + 50109623 aacttc-ctt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3219628 9 + 4464012 aacttc-ctt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712448 9 - 115148730 aacttc-ctt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84331801 9 + 92844088 aacttc-ctt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87678167 9 - 96509753 aacttc-ctt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7175290 9 - 13098629 aacttc-ctt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4134665 9 - 4483953 aacttc-ctt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24764846 9 + 33263144 aacttc-ctt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14045600 9 - 14338769 aacttc-ctt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 984726 9 + 1946073 aacttc-ctt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2011458 6 - 2117846 aac----ttc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8922883 8 - 16357246 aactt--ttc i saiBol1.JH378157 I 88 C 0 s cebCap1.NW_016107750v1 1406563 10 - 1807191 aacttccttc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 37491 6 - 704494 aac----ttc i aotNan1.NW_018512389v1 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346111 77 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I a score=3671537.000000 s hg38.chr22_GL383582v2_alt 142356 377 + 162811 atcttttataccttatttttactgtaccttctctatgtttagacatatgcagatacatacttac----cactcttttacaatctcctacagcattcagtacag--taacatgcggtacaggtttgtatcctaggagcaataggctataccacatagcctagatgggcagtcggctacacccaggctagg-----tgtgtgtaagtacatcctaagatgttagaacaacgacaaaaatcactcaatgatgcacttctta-gaaatattct-gttgttaactgaggcatgattgTACCAAAAC-AAAAAAAAAACAACGTACCACCAG---CACCAAAGGTG-CCAGAGATGAAAATTAGAAAGACGACTGATATTCATTCAACTGCTGACAACAGA s panTro5.chr22 28921911 378 + 37823149 atcttttataccttatttttactgtaccttctctatgtttagacatatgcagatacataaatactta-cattcttttacaatctcctacagcattcagtacag--taacatgcggtacaggtttgtatcctaggagcaataggctataccacatagcctagatgggcagtcggctacacccaggctacg-----tgtgtgtaagtacatcctaagatgttagaacaacgacaaaaatcactcaatgatgcacttctta-gaaatatt----ttgttaactgaggcatgattgTACCAAAAC-AAAAAAAAAACAACGTACCACCAG---CACCAAAGGTGAGCAGAGATGAAAATTAGAAAGACGACTGATATTCATTCAACTGCTGACAACAGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196473 383 + 50109623 atcttttataccttatttttactgtaccttctctatgtttagacatatgcagatacataaatacttaccattcttttacaatctcctacagcattcagtacag--taacatgcggtacaggtttgtatcctaggagcaataggctataccacatagcctagatgggcagtcggctacacccaggctagg-----tgtgtgtaagtacatcctaagatgttagaacaacgacaaaaatcactcaatgatgcacttctta-gaaatattct-gttgttaactgaggcatgattgTACCAAAACAAAAAAAAAAACAACATACCACCAG---CACCAAAGGTGCGCAGAGATGAAAATTAGAAAGACGACTGATATTCATTCAACTGCTGACAACAGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3219637 380 + 4464012 atcttttataccttatttttactgtaccttctctatgtttagacatatgcagatacataaatacttaccattcttttacaatcgcctatagcattcagtacag--taacatgcggtacaggtttgtatcccaggagcaataggctataccacacagcctagatgggcagtcggctacacccaggctagg-----tgtgtgtaagtacatcctaagatgttacaacaacgacaaaaatcactcaatgatgcacttctta-gaaatattct-gttgttaactgaggcattattgTACCAAAAC-AAAACAAAA--AATGTACCACCAG---CACCAAAGGTGCACAGAGATGAAAATTAGAAAGACGACTGATATTCATTCAAGTGCTGACAACAGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712457 380 - 115148730 atcttttataccttattttcactgtaccttctctatgtttagatatatgcagatacataaatacttaccattctttcacaattgcctacagcattcagtacag--taacatgcggtacaggtttgtagcctaggagcaataggctataccacatagcctagatgggcagtcggctacatccaggctagg-----tgtgtgtaagtacatcctaagatgttagaaaaatgacaaaaatcactcaatgacgtgcttctta-gaaatattct-gttgttaactgaggcatgattgTACCAAAACAAAACAAAAAACAACGTACCACCAG---CACCAAAGGTGCGCAGAGATGAAAATTAAAAA---GACTGATATTCATTGAACTGCTGACAACAGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84331810 383 + 92844088 atcttttatatcttatttttactgtaccttctctatgtttagatatatgcagatacataaatacttaccattcttttacaatcgcctacagcattcagtacag--taacatgcggtacaggtttgtagcctaggagcaataggctatactacatagcctagatgtgcagttggctacacccaggctaga-----tgcgtgtaagtacatcctaagatgttagaccaatgacaaaaatcactcaatgatgtacttctta-gatatatt----ctcttaactgaggcatgattgCACCACAACAAAACAAAAAACAACCTACCACCAGCACCACCAAAGGTGCGTAGAGATGAAAATTAAAAAGACGACTGATATTCATTGAACTGCTGACAACAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87678176 383 - 96509753 atcttttatatcttatttttactgtaccttctctatgtttagatatatgcagatacataaatacttaccattcttttacaatcgcctacagcattcagtacag--taacatgcggtacaggtttgtagcctaggagcaataggctatactacatagcctagatgtgcagttggctacacccaggctaga-----tgcgtgtaagtacatcctaagatgttagaccaatgacaaaaatcactcaatgatgtacttctta-gatatatt----ctgttaactgaggcatgattgCACCACAACAAAACAAAAAACAACCTACCACCAGCACCACCAAAGGTGCGTAGAGATGAAAATTAAAAAGACGACTGATATTCATTGAACTGCTGACAACAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7175299 381 - 13098629 atcttttatatcttatttttactgtaccttctc--tgtttagatatatgcagatacataaatacttaccattcttttacaatcgcctacagcattcagtacag--taacatgcggtacaggtttgtagcctaggagcaataggctatactacatagcctagatgtgcagttggctacacccaggctaga-----tgcgtgtaagtacatcctaagatgttagaccaatgacaaaaatcactcagtgatgtacttctta-gatatatt----ctgttaactgaggcatgattgCACCACAACAAAACAAAAAACAACCTACCACCAGCACCACCAAAGGTGCGTAGAGATGAAAATTAAAAAGACGACTGATATTCATTGAACTGCTGACAACAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4134674 383 - 4483953 atcttttataccttatttttactgtaccttctctatgtttagatatatgcagatacataaatacttaccattcttttacaatcgcctacagcattcagtacag--taacatgcggtacaggtttgtagcctaggagcaataggctatactacatagcctagatgtgcagttggctacacccaggctagg-----tgcctgtaagtacatcctaagatgttagaccaatgacaaaaatcactcaatgatgtacttctta-gatatatt----ctgttaactgaggcatgattgCACCAAAACAAATCAAAAAACAACCTACCACCAGCACCACCAAAGGTGCGTAGAGATGAAAATTAAAAAGACGACTGATATTCATTGAACTGCTGACAACAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24764855 383 + 33263144 atcttttataccttatttttactgtaccttctctatgtttagatatatgtagatacataaatacttaccattcttttacaaccgcctacagcattcagtacag--taacatgcggtacaggtttgtagcctaggagcaataggctataccacatagcctagatgtgcagttggctacacccaggctagg-----tgcgtgtaagtacatcctaagatgttggaccgatgacaaaaatcactcaatgatgtacttctta-gaaatact----ctgttaactgaggcatgattgCACCAAAACAAAACAAAAAACAACCTACCACCAGCACCACCAAAGGTGCGTAGAGATGAAAATTAAAAAGACGACTGATATTCATTGAACTGCTGACAACAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14045609 383 - 14338769 atcttttataccttatttttactgtaccttctctatgtttagatatatgcagacacataaatacttaccattcttttacaatcgcctacagcattcagtacag--taacatgcggtacaggtttgtagcctaggagcaataggctatactacatagcctagatgtgcagttggctacacccaggctagg-----tgcatgtaagtacatcctaagatgttagaccaatgacaaaaatcactcaatgatgtacttctta-gatatatt----ctgttaactgaggcatgattgcaccaaaacaaaacaaaaaacaaCCTACCACCAGCACCACCAAAGGTGCGTAGAGATGAAAATTAAAAAGACGACTGATATTCATTGAACTGCTGACAACAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 984735 383 + 1946073 atcttttataccttatttttactgtaccttctctatgtttagatatatgcggatacataaatacttaccattcttttacaatcgcctacagcattcagtacag--taacatgcagtacaggtttgcagcctaggagcaacaggctatactacatagcctagatgtgcagttggctacacccaggctagg-----tgtgtgtaagtacatcctaagatgttagaccaatgacaaaaatcactcaatgatgtacttctta-gaaatatt----ctgttaactaaggcatgattgcaccaaaacaaaacaaaaaacaacctaccaccagcaccaccaAAGGTGCACAGAGATGAAAATTAAAAAGACGACTGATATTCATTGAACTGCTGACAACAGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2011464 390 - 2117846 atctttcataccttatttttactgtacctttcctatgtttagatatattcagacacatatacacctaccattgtgttacaattgcctatagcatttgatacagtttaacatgtggtacaggtttgtagcctaacaacaaaaggctatacggcatagcctaagtgagcagttggctac-gccaggctaggttaggtgtgtctaagtacatcctaagatgttcaaacaatgacaaaaatcactcaatgatgcacttcttacaacatattct-gttgttaactgaggcatgattgTACCAAAACAAAACAAAAAACAACCTACCACCAGTACCACCCAAGGTGTGCAGAGATGAATTAAAGAGA---GACTGATATTCGTTGAACTGCTGACAACAGA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8922891 391 - 16357246 atcttttatatcttatttttactgcacctttcctatgtttagatatattcagatacatatatacctaccattgtgttacagtcgcctacagcatttgatacagtttaacatgtggcacaggtttgtagtctaggaacaaaaggctatactgcatagcctaggtgtgcagttggctacagccaggctaggttaggtgtgtctaagcacatcctaagatgcttgaacaatgacaaaaatcactcagtgatgcacttcttacaacatattct-gttgttaactgaggcatgattgTACCAGAATAAAACAAAAAACAACCTACCACCAGTACCACCAAAGGTGTGCAGAAATGAAAATTTACTA---GACTCATATTTGTTGAACTGCTGACAACTGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1406573 388 - 1807191 atcttttataccttatttttactgtacctttcctatgtttacatacattcagatacatatatacctaccattgtgttacaatcgcctacagcatttgatacagtttaacatgtggtacaggtttgtagcctaggaacaaaaggctacactgcatagcctacatgtgcagttggctacagccaggctaggttaggtgtgtctaagtacatcctaagatgcttgaataatgacaaaaatcactcagtgatgcacttcttacaacatattct-gttgttaactgaggcatgattgTACCAAAACAAAACAAAA---AACCTACCACCAGTACCACCAAAGGTGTGCAGAGATGAAAATTAAAAA---GACTGATATTCGTTGAACTGCTGACAACAGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 37497 391 - 704494 atcttttataccttatttttactgtacctttcctatgtttagatatattcagatacatatatacctaccattgtgttacaattgcctacagcatttgatacagtttaacatgtggtacaggtttgtagcctaggaacaaaaggctatactgcatagcctaggtgtgcagctggctacagccaggctaggttagatgtgtttaagtacattctaagatgttcaaacaatgacaaaaatcactcaatgatgcatttcttacaacatattct-gttgttaactgaggcatgattgTACCAAAACAAAACAAAAAACCACCTACCACCAGTACCACCAAAGGTGTGCAGGGATGAAAATTAAAGA---GACTGATAGTCGTTGAACTGCTGACAACAGA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36346188 340 - 42659167 atcttttatatagtatttttacggtgccttttttatgtttaggtatctttggacacacaaatac----cattgtgttataagtgcctacagctttcagcagac--taacatgctatataggtttatagcctaaaagca--------------acagcctaggtatgtagtacgctatgt----actact-----tacgggtaagtccaccataagacatttcaacaatgatgaaactgtct-aacaatacatttctcagaacacatcctccttgctTATAAAGGCGAGACTAAACCAAAATAAATAAATAAATA------------------------TGCATAGAGATGAAAGTAAAAAAGA-GATCAATATTCATTAATCTATTGACACCAGA i otoGar3.GL873526 I 77 I 10 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I a score=277074.000000 s hg38.chr22_GL383582v2_alt 142733 30 + 162811 TGTTTTGGGGGTGGGATTACAGGGCATAGT s panTro5.chr22 28922289 30 + 37823149 TGTTTTGGGGGTGGGATTACAGGGCACAGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196856 30 + 50109623 TGTTTTGGGGGTGAGATTACAGGGCACAGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220017 30 + 4464012 TGTTTTGGGGGTGGGATTACAGGGCATAGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712837 30 - 115148730 TGTTTTGGGGGTGGGATTACAGGGTATAGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84332193 30 + 92844088 TGTTTTGGGGGTGGGATTACAGGTCATAGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87678559 30 - 96509753 TGTTTTGGGGGTGGGATTACAGGTCATAGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7175680 30 - 13098629 TGTTTTGGGGGTGGGATTACAGGTCATAGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4135057 30 - 4483953 TGTTTTGGGGGTGGGATTACAGGTCATAGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24765238 30 + 33263144 TGTTTTGGGGGTGGGATTACAGGTCATAGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14045992 30 - 14338769 TGTTTTGGGGGTGGGATTACAGGTCATAGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 985118 30 + 1946073 TGTTTTGGGGGTGGGATTACAGGTCACAGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2011854 30 - 2117846 TGTTTTGTGGGTGGGACTACAGGGAATAGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8923282 30 - 16357246 TGTTTTGCCAGTGGGACTACCAGGAATAGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1406961 30 - 1807191 TGTTTTGCCGGTAGGACTACAGGGGATAGT i cebCap1.NW_016107750v1 C 0 I 55 s aotNan1.NW_018512389v1 37888 30 - 704494 TGTTTTGTGGGTAGGACTACAGGGGATAGT i aotNan1.NW_018512389v1 C 0 I 10 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I a score=-4349.000000 s hg38.chr22_GL383582v2_alt 142763 1 + 162811 -C s panTro5.chr22 28922319 1 + 37823149 -C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196886 1 + 50109623 -C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220047 1 + 4464012 -C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712867 1 - 115148730 -C i nomLeu3.chr7b C 0 I 2 s rheMac8.chr10 84332223 1 + 92844088 -C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87678589 1 - 96509753 -C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7175710 1 - 13098629 -C i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4135087 1 - 4483953 -C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24765268 1 + 33263144 -C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14046022 1 - 14338769 -C i manLeu1.NW_012102031v1 C 0 I 13 s colAng1.NW_012115588v1 985148 1 + 1946073 -C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2011884 1 - 2117846 A- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8923312 1 - 16357246 A- i saiBol1.JH378157 C 0 C 0 e aotNan1.NW_018512389v1 37918 10 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1406991 55 - 1807191 I a score=31931.000000 s hg38.chr22_GL383582v2_alt 142764 6 + 162811 ATCTTT s panTro5.chr22 28922320 6 + 37823149 ATCTTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196887 6 + 50109623 ATCTTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220048 6 + 4464012 ATCTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712870 6 - 115148730 ATCTTC i nomLeu3.chr7b I 2 C 0 s rheMac8.chr10 84332224 6 + 92844088 ACCTTT i rheMac8.chr10 C 0 I 7 s macFas5.chr10 87678590 6 - 96509753 ACCTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7175711 6 - 13098629 ACCTTT i macNem1.NW_012012688v1 C 0 I 7 s cerAty1.NW_011999588v1 4135088 6 - 4483953 ACCTTT i cerAty1.NW_011999588v1 C 0 I 7 s chlSab2.chr19 24765269 6 + 33263144 ACCTTT i chlSab2.chr19 C 0 I 7 s colAng1.NW_012115588v1 985149 6 + 1946073 ACCTTT i colAng1.NW_012115588v1 C 0 I 7 s calJac3.chrUn_GL286373 2011885 6 - 2117846 ATGTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8923313 6 - 16357246 ACATTT i saiBol1.JH378157 C 0 C 0 e aotNan1.NW_018512389v1 37918 10 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1406991 55 - 1807191 I e manLeu1.NW_012102031v1 14046023 13 - 14338769 I a score=13374.000000 s hg38.chr22_GL383582v2_alt 142770 7 + 162811 CAGCAAC s panTro5.chr22 28922326 7 + 37823149 CAGCAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196893 7 + 50109623 CAGCAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220054 7 + 4464012 CAGCAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712876 7 - 115148730 CAGAAAC i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87678596 7 - 96509753 TAGAAAC i macFas5.chr10 C 0 C 0 s calJac3.chrUn_GL286373 2011891 7 - 2117846 TAGAAAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8923319 7 - 16357246 TAGAAAC i saiBol1.JH378157 C 0 C 0 e aotNan1.NW_018512389v1 37918 10 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1406991 55 - 1807191 I e colAng1.NW_012115588v1 985155 7 + 1946073 I e manLeu1.NW_012102031v1 14046023 13 - 14338769 I e chlSab2.chr19 24765275 7 + 33263144 I e cerAty1.NW_011999588v1 4135094 7 - 4483953 I e macNem1.NW_012012688v1 7175717 7 - 13098629 I e rheMac8.chr10 84332230 7 + 92844088 I a score=19235.000000 s hg38.chr22_GL383582v2_alt 142777 13 + 162811 TAGTTCGATCggc s panTro5.chr22 28922333 13 + 37823149 TAGTTCGATCggc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196900 13 + 50109623 TAGTTCGATCggc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220061 13 + 4464012 TAGTTCGATCggc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712883 13 - 115148730 TCGTTTGATCggc i nomLeu3.chr7b C 0 C 0 s calJac3.chrUn_GL286373 2011898 13 - 2117846 TAGTTTGACCAAC i calJac3.chrUn_GL286373 C 0 I 28 s saiBol1.JH378157 8923326 13 - 16357246 TAGTTTGACTGAC i saiBol1.JH378157 C 0 I 28 e aotNan1.NW_018512389v1 37918 10 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1406991 55 - 1807191 I e colAng1.NW_012115588v1 985155 7 + 1946073 I e manLeu1.NW_012102031v1 14046023 13 - 14338769 I e chlSab2.chr19 24765275 7 + 33263144 I e cerAty1.NW_011999588v1 4135094 7 - 4483953 I e macNem1.NW_012012688v1 7175717 7 - 13098629 I e macFas5.chr10 87678603 0 - 96509753 C e rheMac8.chr10 84332230 7 + 92844088 I a score=218549.000000 s hg38.chr22_GL383582v2_alt 142790 272 + 162811 cgggcgcagtggctcacgcccgtaatcccagcactttgggaggtcgaggcgggcggatcacgaggtcaggagatcgagaccatcctgtctaacacggtgaaaccccatctctact-aaaaaaaatacaaaaaaattagcacggcgtggtggcgggcacctgtggtcccagc--------------------------------aacccgggaggcggagcttgcagtgagcctagatcgtgccactgcgctccagcctgggcaacagagcaagactccgtctccaaaaagaaaa--aaaaaaaaaaa s panTro5.chr22 28922346 271 + 37823149 caggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcgcaaggtcaggagatcgagaccatcctgtctaacacggtgaaaccccatctctact-aaaaaaaatacaaaaaaattagcacggcgtggtggcgggcacctgtggtcccagc--------------------------------aacccgggaggcagagcttgcagtgagcctagatcgtgccactgcgctccagcctgggcaacagagcaagactccgtctccaaaaagaaaa--aaaaaaaaaa- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41196913 272 + 50109623 caggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcaggagatcgagaccatcctgtctaacacggtgaaaccccatctctactaaaaaaaaatacaaaaaaattagcacggcgtggtggcgggcgcctgtggtcccagc--------------------------------aacccgggaggcagagcttgcagtgagcctagatcgtgccaccgcgctccagcctgggcaacagagcaagactccatctccaaaaagaaaa--aaaaaaaaaa- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220074 304 + 4464012 cgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgagttcaggagatcgagaccatcctgtctaacacggtgaaaccccatctctactaaaaaaaaatacaaaaaaattagcacggcgtggtggcgggcgcctgtggtcccagcaacccgggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgcagtgagccaagatcgtgccactgcactccagcctgggcaacagagcaagactccgtctccaaaaagaaaa--gaaaaaaaaa- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106712896 302 - 115148730 cgggcacagtggcttacgtctgtaatcc---cactttgggaggccgagacaggcgcatcacgaggtcgggagatcgagaccatcctgtctaacatggtgaaaccctgtctctact-aaaaaaaatgcaaaaaaattaccatggcgtggtggcgggcgcctgtggtcccagcaacccgggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtctaccaagatggcgccactgagctccagcctgggcaacacaacattattgcgtctccaaaaagaaaactaaaaaaataa- i nomLeu3.chr7b C 0 C 0 e aotNan1.NW_018512389v1 37918 10 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1406991 55 - 1807191 I e saiBol1.JH378157 8923339 28 - 16357246 I e calJac3.chrUn_GL286373 2011911 28 - 2117846 I e colAng1.NW_012115588v1 985155 7 + 1946073 I e manLeu1.NW_012102031v1 14046023 13 - 14338769 I e chlSab2.chr19 24765275 7 + 33263144 I e cerAty1.NW_011999588v1 4135094 7 - 4483953 I e macNem1.NW_012012688v1 7175717 7 - 13098629 I e macFas5.chr10 87678603 0 - 96509753 C e rheMac8.chr10 84332230 7 + 92844088 I a score=1057.000000 s hg38.chr22_GL383582v2_alt 143062 5 + 162811 aaaCT s panTro5.chr22 28922617 2 + 37823149 ---CT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197185 3 + 50109623 --aCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220378 3 + 4464012 --aCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713198 3 - 115148730 --aaT i nomLeu3.chr7b C 0 C 0 s aotNan1.NW_018512389v1 37928 5 - 704494 AAACT i aotNan1.NW_018512389v1 I 10 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1406991 55 - 1807191 I e saiBol1.JH378157 8923339 28 - 16357246 I e calJac3.chrUn_GL286373 2011911 28 - 2117846 I e colAng1.NW_012115588v1 985155 7 + 1946073 I e manLeu1.NW_012102031v1 14046023 13 - 14338769 I e chlSab2.chr19 24765275 7 + 33263144 I e cerAty1.NW_011999588v1 4135094 7 - 4483953 I e macNem1.NW_012012688v1 7175717 7 - 13098629 I e macFas5.chr10 87678603 0 - 96509753 C e rheMac8.chr10 84332230 7 + 92844088 I a score=185601.000000 s hg38.chr22_GL383582v2_alt 143067 30 + 162811 AGTTTGACCAACATGCTAATTTTAAAAC---AA s panTro5.chr22 28922619 30 + 37823149 AGTTTGACCAACATGCTAATTTTAAAAC---AA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197188 27 + 50109623 AG-TTGACCAACATGCTAATTT--AAAC---AA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220381 30 + 4464012 AGTTTGACCAACATGCTAATTTTAAAAC---AA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713201 33 - 115148730 AATTTGACCAACATGTTAATTTTAAAACAATAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84332237 30 + 92844088 AGTTTGACCAACACGTTAATTTTAAAAC---AA i rheMac8.chr10 I 7 C 0 s macFas5.chr10 87678603 30 - 96509753 AGTTTGACCAACACGTTAATTTTAAAAC---AA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7175724 30 - 13098629 AGTTTGACCAACACGTTAATTTTAAAAC---AA i macNem1.NW_012012688v1 I 7 C 0 s cerAty1.NW_011999588v1 4135101 30 - 4483953 AGTTTGACCAACACGTTAATTTTAAAAC---AA i cerAty1.NW_011999588v1 I 7 C 0 s chlSab2.chr19 24765282 30 + 33263144 AGTTTGACCAACACGTTAATTTTAAAAC---AA i chlSab2.chr19 I 7 C 0 s manLeu1.NW_012102031v1 14046036 30 - 14338769 AGTTTGATCAACACGTTAATTTTAAAAC---AA i manLeu1.NW_012102031v1 I 13 C 0 s colAng1.NW_012115588v1 985162 30 + 1946073 AGTTTGACCAACACGTTAATTTTAAAAC---AA i colAng1.NW_012115588v1 I 7 I 14 s aotNan1.NW_018512389v1 37933 30 - 704494 AGTTTGACCAACATGTTAATTTTAAAAC---AA i aotNan1.NW_018512389v1 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1406991 55 - 1807191 I e saiBol1.JH378157 8923339 28 - 16357246 I e calJac3.chrUn_GL286373 2011911 28 - 2117846 I a score=1365.000000 s hg38.chr22_GL383582v2_alt 143097 1 + 162811 A s panTro5.chr22 28922649 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197215 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220411 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713234 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s aotNan1.NW_018512389v1 37963 1 - 704494 A i aotNan1.NW_018512389v1 C 0 I 9 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1406991 55 - 1807191 I e saiBol1.JH378157 8923339 28 - 16357246 I e calJac3.chrUn_GL286373 2011911 28 - 2117846 I e colAng1.NW_012115588v1 985192 14 + 1946073 I e manLeu1.NW_012102031v1 14046066 0 - 14338769 C e chlSab2.chr19 24765312 0 + 33263144 C e cerAty1.NW_011999588v1 4135131 0 - 4483953 C e macNem1.NW_012012688v1 7175754 0 - 13098629 C e macFas5.chr10 87678633 0 - 96509753 C e rheMac8.chr10 84332267 0 + 92844088 C a score=56821.000000 s hg38.chr22_GL383582v2_alt 143098 18 + 162811 TAAAATTTAAAAGAAAAC s panTro5.chr22 28922650 18 + 37823149 TAAAATTTAAAAGAAAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197216 18 + 50109623 TAAAATTTAAAAGAAAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220412 18 + 4464012 TAAAATTTAAAAGAAAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713235 17 - 115148730 TATAATTTATAATAAAA- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84332267 17 + 92844088 -GAAATAAAAAAGAAAAC i rheMac8.chr10 C 0 I 2 s macFas5.chr10 87678633 17 - 96509753 -GAAATAAAAAAGAAAAC i macFas5.chr10 C 0 I 2 s macNem1.NW_012012688v1 7175754 17 - 13098629 -GAAATAAAAAAGAAAAC i macNem1.NW_012012688v1 C 0 I 2 s cerAty1.NW_011999588v1 4135131 17 - 4483953 -GAAATAAAAAAGAAAAC i cerAty1.NW_011999588v1 C 0 I 2 s chlSab2.chr19 24765312 17 + 33263144 -GAAATAAAAAAGAAAAC i chlSab2.chr19 C 0 I 2 s manLeu1.NW_012102031v1 14046066 17 - 14338769 -GAAATAAAAAAGAAAAC i manLeu1.NW_012102031v1 C 0 I 2 e aotNan1.NW_018512389v1 37964 9 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1406991 55 - 1807191 I e saiBol1.JH378157 8923339 28 - 16357246 I e calJac3.chrUn_GL286373 2011911 28 - 2117846 I e colAng1.NW_012115588v1 985192 14 + 1946073 I a score=296455.000000 s hg38.chr22_GL383582v2_alt 143116 57 + 162811 aa----taattgcaactacttttattgagtgtttaaattatgtgcaatgcaatattttttg s panTro5.chr22 28922668 61 + 37823149 AAACaataattgcaactacttttattgagtgtttaaattatgtgctatgcaatattttttg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197234 61 + 50109623 AAACaataattgcaactacttttattgagtgtttaaattatgtgctatgcaatattttttg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220430 61 + 4464012 AAACaataattgcaactacttttattgagtgtttaaattatgtgcaatgcaatattttttg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713252 57 - 115148730 ----AATCATTGCAACTACTTTTATTGAGTGTTTAAATTATGTGCAATGAAGTATTTTTTG i nomLeu3.chr7b C 0 M 100 s rheMac8.chr10 84332286 55 + 92844088 ----aataactgcaactacttttattgagtgtttaaattatgtgcaaagcagtattttt-- i rheMac8.chr10 I 2 C 0 s macFas5.chr10 87678652 55 - 96509753 ----aataactgcaactacttttattgagtgtttaaattatgtgcaaagcagtattttt-- i macFas5.chr10 I 2 C 0 s macNem1.NW_012012688v1 7175773 55 - 13098629 ----aataactgcaactacttttattgagtgtttaaattatgtgcaaagcagtattttt-- i macNem1.NW_012012688v1 I 2 C 0 s cerAty1.NW_011999588v1 4135150 57 - 4483953 ----aataactgcaactacttttattgagtgtttaaattatgtgcaaagcagtattttttg i cerAty1.NW_011999588v1 I 2 C 0 s chlSab2.chr19 24765331 57 + 33263144 ----aataactgcaactacttttattgagtgtttaaattatgtgcaaagcagtattttttg i chlSab2.chr19 I 2 C 0 s manLeu1.NW_012102031v1 14046085 57 - 14338769 ----aataactgcaactacttttattgagtgtttaaattatgtgcaaagcagtattttttg i manLeu1.NW_012102031v1 I 2 C 0 s colAng1.NW_012115588v1 985206 57 + 1946073 ----aataactgcaactacttttattgagtgtttaaattatgtgcaacgcagtatttttgg i colAng1.NW_012115588v1 I 14 C 0 e aotNan1.NW_018512389v1 37964 9 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1406991 55 - 1807191 I e saiBol1.JH378157 8923339 28 - 16357246 I e calJac3.chrUn_GL286373 2011911 28 - 2117846 I a score=423317.000000 s hg38.chr22_GL383582v2_alt 143173 96 + 162811 tttgttttgagacagagtctccctctgtcgtccaggctggagtgcactggtgcaatctcggctcagtgcaacctctgcctccctggttcaagcaat s panTro5.chr22 28922729 96 + 37823149 tttgttttgagacagagtctccctctgttgtccacgctggagtgcagtggtgcaatctcggctcagtgcaacctctgcctccctggttcaagcaat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197295 94 + 50109623 tttgttttgagac--agtctccctctgtcgtccaggctggagtgcagtggtgcaatctcggctcagtgcaacctctgcctccctggttcaagcaat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220491 96 + 4464012 tttgttttgagacagagtctccctctgtcgtccaggctggagtgcagtggtgcaatctcggctcagtgcaacctctgcctccctggttcaagcaat i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84332341 94 + 92844088 tttgttttgaaac--agtctccctctgttgtccaggtcggagcgcagtggtgcaatctcggctcaccgcaacccctgcctccggggttcaagcgat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87678707 94 - 96509753 tttgttttgaaac--agtctccctctgttgtccaggtcggagctcagtggtgcaatctcggctcaccgcaacccctgcctccggggttcaagcgat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7175828 94 - 13098629 tttgttttgaaac--agtctccctctgttgtccaggtcggagcgcagtggtgcaatctcggctcaccgcaacccctgcctccggggttcaagcgat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4135207 96 - 4483953 tttgttttgaaacagagtctccctctgttgtccaggtcggagcgcaatggtgcaatctcggctcaccgcaacccctgcctctggggttcaagcgat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24765388 96 + 33263144 tttgttttgaaacagagtctccctctgttgtccaggtcggagcgcagtggtgcagtctcggctcaccgcaacccctgcctccagggttcaagcgat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14046142 96 - 14338769 tttgttttgaaacagagtctccctctgttgtccaggtcggagcgcagtggtgcaatctcggctcaccgcaacccctgcctctggggttcaagcgat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 985263 94 + 1946073 tttgttttgaaac--agtctccctctgttgttcaggccggaatgcagtggtgcaatctcggctcaccgcaacccctgcctctggggttcaagcgat i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512389v1 37964 9 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1406991 55 - 1807191 I e saiBol1.JH378157 8923339 28 - 16357246 I e calJac3.chrUn_GL286373 2011911 28 - 2117846 I e nomLeu3.chr7b 106713309 100 - 115148730 M a score=29458.000000 s hg38.chr22_GL383582v2_alt 143269 5 + 162811 tctcc s panTro5.chr22 28922825 5 + 37823149 tctcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197389 5 + 50109623 tctcc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220587 5 + 4464012 tctcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713409 5 - 115148730 tctca i nomLeu3.chr7b M 100 C 0 s rheMac8.chr10 84332435 5 + 92844088 tctcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87678801 5 - 96509753 tctcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7175922 5 - 13098629 tctcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4135303 5 - 4483953 tctcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24765484 5 + 33263144 tctcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14046238 5 - 14338769 tctcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 985357 5 + 1946073 tctcc i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512389v1 37964 9 - 704494 I e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I e cebCap1.NW_016107750v1 1406991 55 - 1807191 I e saiBol1.JH378157 8923339 28 - 16357246 I e calJac3.chrUn_GL286373 2011911 28 - 2117846 I a score=1677659.000000 s hg38.chr22_GL383582v2_alt 143274 184 + 162811 tgcctcagtctcccaagtagctgagattacaggcttgtgccacaatacccggctaatttttgtatttttagtagaggcgaggttttaaccatgttggccagactggtctcggactcctgacctgaagtcatccacctgcctcggcctcccaaagtgctaggattacaggtgtgagccatcacac s panTro5.chr22 28922830 184 + 37823149 tgcctcagtctcccaagtagctgagattacaggcttgtgccacaatacccggctaatttttgtatttttagtagaggcgaggttttaaccatgttggccagactggtctcgaactcctgacctcaagtcatccacctgcctcggcctcccaaagtgctaggattacaggtgtgagccatcacac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197394 184 + 50109623 tgcctcagtctcccaagtagctgagattacaggcttgtgccacaatacccggctaatttttgtatttttagtagaggcgaggttttaaccatgttggccagactggtctcgaactcctgacctcaagtcatccacctgcctcggcctcccaaagtgctaggattacaggtgtgagccatcacac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220592 184 + 4464012 tgcctcagtctcccaagtagctgagattacaggcttgtgccacaatacccggctaatttttgtatttttagtagaggcgaggttttcaccatgttggccagactggtcttgaactcctgacctcaagtcatccacctgcctcagcctcccaaagtgctaggattacaggtgtgagccatcacac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713414 184 - 115148730 tgcctcagtctcccaagtagctgagattacaggcttgtgccacaatacccggctaatttttgtatttttagtagaggcgaggttttcaccatgttggccagactggtctcgaactcctgacttcaagtgatccacctgcctcggcctcccaaagtgctagaattacaggtgtgagccatcacac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84332440 183 + 92844088 tgcctcagtctcccgagcagctgggattacaggcgtttgccacaacacccggctaatttttgtatttttagtcgagacgagg-tttcaccacgttggccagactggtctcgaattcctgacctcaagtgatccatctgccttggcctcccaaagtgctagggttacaggtgtgagccactgcac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87678806 183 - 96509753 tgcctcagtctcccgagcagctgggattacaggcgtttgccacaacacccggctaatttttgtatttttagtcgagacgagg-tttcaccacgttggccagactggtctcgaattcctgacctcaagtgatccatctgcctcggcctcccaaagtgctagggttacaggtgtgagccactgcac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7175927 183 - 13098629 tgcctcagtctcccgagcagctaggattacaggcgtttgccacaacacccggctaatttttgtatttttagtagagacgagg-tttcaccacgttggccagactggtctcgaattcctgacctcaagtgatccatctgcctcggcctcccaaagtgctagggttacaggtgtgagccactgcac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4135308 183 - 4483953 tgcctcagtctcccgagcagctgggattacaggcgtttgccacaacacctggctaatttttgtatttttagtagagacgagg-tttcaccacgttggccagactggtctcgaattcctgacctcaagtgatccatctgcctcggcctcccaaagtgctagggttacaggtgtgagccactgcac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24765489 182 + 33263144 tgcctcagtctcccaagcagctgggattacaggcgtttgccacagcacccggctaatttttgtatttttagtagagatgagg-tttcaccacgttggccagactggtcttgaattcctaacctcaagtgatccatctgcctcggcct-ccaaagtgctagggttacaggtgtgagccactgcac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14046243 183 - 14338769 tgcctcagtctcccgagcagctgggattacaggcgtttgccacaacacctggctaatttttgtatttttagtagagacaagg-tttcaccacgttggccagactggtctcgaattcctgacctcaagtgatccatctgcctcggcctcccaaagtgctagggttacaggtgtgagccactgcac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 985362 183 + 1946073 tgcctcagtctcctgagcagctggaattacaggcgtttgccataacacccggctaatttttgtatctttagtagagacgagg-tttcaccacgttggccagactggtctcaaattcctgacctcaagtgatccatctgccttggcctcccgaagtgctaggattacaggtgtgcgccattgcac i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2011939 175 - 2117846 tgcctcagcctcccaagtagctgggattacaggcatgtgccaccacgcccagctaa-ttttgtatttttaatagagatgggg-tttcaccaggttggccaggctggtcttgaactcctgacctcaagtgatctacctgccttggtctcccaaagtgctaggattacCAGCCTG-------GCAC i calJac3.chrUn_GL286373 I 28 C 0 s saiBol1.JH378157 8923367 175 - 16357246 tgcctcagcctcccaagtagctgggattacaggcatgtgccaccatgcccagctaa-ttttgtatttttagtagagatgggg-tttcaccaggttggccaggctggtcttgaactcctgacctcacgtgatccacctgcctcagtctcccaaagtgctaggattaccggcctg-------GTAC i saiBol1.JH378157 I 28 C 0 s cebCap1.NW_016107750v1 1407046 175 - 1807191 tgcctcagcctcccaagtagctgggattacaggcatgtgccaccaggcccagctaa-tttagtatttttagtagagatgggg-tttcaccaggttggccaggctggtcttgaactcctgacctcaagtgatccacctgcctcagtctcccaaagtgctaggattacCAGCCTG-------GCAC i cebCap1.NW_016107750v1 I 55 C 0 s aotNan1.NW_018512389v1 37973 175 - 704494 tgcctcagcctcccaagtagctgggattacgggcatgcgccaccacgcccagctaa-ttctgtatttttagtagagatgggg-tttcaccaggttggccaggctggtcttgaactcctgacctcaagtgatccacctgccttggtctcccaaagtgctaggattaccggcctg-------GCAC i aotNan1.NW_018512389v1 I 9 C 0 e mm10.chr15 82862696 10835 + 104043685 I e dasNov3.JH570235 136190 205 + 1056298 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I a score=215606.000000 s hg38.chr22_GL383582v2_alt 143458 23 + 162811 ccagctgcaatgcaatatattat s panTro5.chr22 28923014 23 + 37823149 ccagctgcaatgcaatatattat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197578 23 + 50109623 ccagctgcaatgcaatatattat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220776 23 + 4464012 ccagctgcaatgcaatatattat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713598 23 - 115148730 ccAACTGCAATGCAatatattat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84332623 23 + 92844088 ccagttgcaatgcaatatattat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87678989 23 - 96509753 ccagttgcaatgcaatatattat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176110 23 - 13098629 ccagttgcaatgcaatatattat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4135491 23 - 4483953 ccagttgcaatgcaatatattac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24765671 23 + 33263144 ccagttgcaatgcaatatattat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14046426 23 - 14338769 ccagttgcaatgcaatatattac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 985545 23 + 1946073 ccagctgcaatgcaatatattat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012114 23 - 2117846 CCAGCAGCAAAGGAAAATattat i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8923542 23 - 16357246 CCAGCAGCAAAGGAAAATATTAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1407221 23 - 1807191 CCAGCAGCAAAGGAAAATATTAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 38148 23 - 704494 CCAGCAGCAAAGGAAAATATTAT i aotNan1.NW_018512389v1 C 0 C 0 s dasNov3.JH570235 136395 23 + 1056298 ctagatgctggacaatatataac i dasNov3.JH570235 I 205 C 0 e mm10.chr15 82862696 10835 + 104043685 I e canFam3.chr10 46151876 2781 - 69331447 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I a score=1563930.000000 s hg38.chr22_GL383582v2_alt 143481 143 + 162811 agtctcatttaatcttaac---tctattatgcagtaactagccat--tctgcagatgaggaaacaaaggctcagaaagttt-agtaactctcataaggttatacagccagtcagtgaggaagacaggctggg-a-------------ctaacaaggaatgtgc s panTro5.chr22 28923037 143 + 37823149 agtctcatttaatcttaac---tctattatgcagtaactagccat--tctgcagatgaggaaacaaaggctcagaaagttt-agtaactctcataaggttatacagccagtcagtgaggaagacaggctggg-a-------------ctaataaggaatgtgc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197601 143 + 50109623 agcctcatttaatcttaac---tctattatgcagtaactagccat--tctgcagatgaggaaacaaaggctcagaaagttt-agtaactctcataaggttatacagccagtcagtgaggaagacaggctggg-a-------------ctaataaggaatgtgc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220799 143 + 4464012 agtctcatttaatcttaac---tctattatgcagtaactagccat--tctgcagatgaggaaacaaaggctcagaaagttt-agtaactctcataaggttatacagtcagtcagtgaggaagacaggctggg-a-------------ctaataaggaatgtgc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713621 141 - 115148730 agtctcattttatcttaa-----ctattatgcagtaactagccat--tctgcagatgaggaaacaaaggctcagaaagttt-agtaactctcataaggttatacagccagtcagtgaagaagacaggctggg-a-------------ctaataaggaatgtgc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84332646 144 + 92844088 agtctcatttaatcttaac---tctatgatgtagtaactagtcat--tacacagatgaggaaacaaaggctcagagagtttaagtaactctcataaggttatacagccagtcagtgaagaagacaggTTGGG-A-------------CTAATAAGGAATGTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679012 144 - 96509753 agtctcatttaatcttaac---tctatgatgtagtaactagtcat--tacacagatgaggaaacaaaggctcagagagtttaagtaactctcataaggttatacagccagtcagtgaagaagacaggttggg-a-------------ctaataaggaatgtgc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176133 144 - 13098629 agtctcatttaatcttaac---tctatgatgtagtaactagtcat--tacacagatgaggaaacaaaggctcagagagtttaagtaactctcataaggttatacagccagtcagtgaagaagacaggTTGGG-A-------------CTAATAAGGAATGTGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4135514 144 - 4483953 agtctcatttaatcttaac---tctatgatgtagtaactagtcat--tacacagatgaggaaacaaaggctcagagagtttaagtaactctcataaggttatacagccagtcagtgaagaagacaggTTGGG-A-------------CTAATAAGGAATGTGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24765694 144 + 33263144 agtctcatttaatcttaac---tctatgatgtagtaactagtcat--tacacagatgaggaaacaaaggctcagagagtttaagtaactctcataaggttatacagccagtcagtgaagacgacaggttggg-a-------------ctaATAAGGAATGTGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14046449 144 - 14338769 agtctcatttaatcttaac---tctatgatgtagtaactagtcat--tacacagatgaggaaacaaaggttcagagagtttaagtaactctcataaggttatacagccagtcagtgaagaagacaggTTGGG-A-------------CTAATAAGGAATGTGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 985568 141 + 1946073 agtctcattaaatctgaac---tctatgatgtagtaactagtcat--tacgcagatgaggaaacaaaggcacagagagtt----taactctcataaggttatacagccagtcagtgaagaagacaggttgggaa-------------cTAATAAGGAATGTGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012137 140 - 2117846 agcctcatttaatcttacc---tctatgatgtagtaactagccaacctctgcagatgaggaaac--aggctcagaaagttt-agtaactcttgtaaggttatacagccagtcagtgaa---gacaggctggg-a-------------ctaatacagtatgtgc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8923565 145 - 16357246 AGCctcatttaatcttacc---tctatgatgtagtaactagccatcctctgcagatgaggaaacagaggctcagaaaattt-agtaactctcgtaaggttatacagccagtcagtgaagacgacaggctggt-a-------------ctaatacagtatgtgc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1407244 145 - 1807191 AGCctcatttaatcttacc---tctatgatggagtaactagccatcctctgcagatgaggaaacagaggctcagaaagttc-attaactctcgtaaggttatacagccagtcagtgaagaagacaggctggg-a-------------ctaatacagtatgtgc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 38171 145 - 704494 AGCctcatttaatcttacc---tctatgatgtagtaaacagccatcctctgcagatgaggaaacagaggctcagaaagttt-actaactctcgtaaggttatacagccagtcagtgaagaagacaggctggg-a-------------ctaatacagtatgtgc i aotNan1.NW_018512389v1 C 0 C 0 s canFam3.chr10 46154657 156 - 69331447 agtctcatataatcttaacaaatctgcgatgtagttattagccat--tctgcagaatgggaaactgaggctcagaaagctg----aattctcacaaggttacacagctggtcagtgaagaagaaatgctgag-atttaagaccaggtctaataaagaatgtgc i canFam3.chr10 I 2781 I 1 s dasNov3.JH570235 136418 160 + 1056298 aatcttatttaatcttaacaactctatgatgtggttaggagtcgt--tctgtagaagagggaaatgaagcttagaaagtttaaataactctcacaaggttacagagctagtcaatgaagaagaaaagctgtg-atttaagcccaggtctgatgaagactgcgc i dasNov3.JH570235 C 0 I 6 e mm10.chr15 82862696 10835 + 104043685 I e otoGar3.GL873526 36346528 10 - 42659167 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I a score=1093708.000000 s hg38.chr22_GL383582v2_alt 143624 103 + 162811 cctaacttc--taCTGTTCTTAGCAATGTTCTGTGTAT-TCCCAGCACACCCAGCAGGCAC------CTTCTGCACCTTTTCGTTTGTTCAGCCTGGTCCTTCTGCGTGAAT s panTro5.chr22 28923180 103 + 37823149 cctaacttc--taCTGTTCTTAGCAATGTTCTGTGTAT-TCCCAGCACACCCAGCAGGCAC------CTTCTGCACCTTTTCCTTTGTTCAGCCTGGTCCTTCTGCGTGAAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197744 103 + 50109623 cctaacttc--taCTGTTCTTAGCAATGTTCTGTGTAT-TCCCAGCACACCCAGCAGGCAC------CTTCTGCACCTTTTCCTTTGTTCAGCCTGGTCCTTCTGCGTGAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3220942 103 + 4464012 cctaacttc--taCTGTTCTTAGCAATGTTCTGTGTAT-TCCCAGCACACCCAGCAGGCAC------CTTCTGCACCTTTTCCTTTGTTCAGCCTGGTCCTTCTGCGTGAAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713762 103 - 115148730 cctaacttc--tactgctcttagcAATGTTCTGtgtat-tcccagcacacccagcagggac------cttctgcaccttttcctttgttcagcctggtccttctgcctgaat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84332790 101 + 92844088 CCTAATTTC--TACCGTTCTTAGCGATGT--TGTGTAT-TCCCAGAACACCCAGCAGGCAC------CTTTTGCATCTTTTCTTTTGTTCAGCCTGGTCCTTCTGCCTGAAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679156 101 - 96509753 cctaatttc--taccgttctTAGCGATGT--TGtgtat-tcccagaacacccagcaggcac------cttttgcatcttttcttttgttcagcctggtccttctgcctgaat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176277 101 - 13098629 CCTAATTTC--TACCGTTCTTAGCGATGT--TGTGTAT-TCCCAGAACACCCAGCAGGCAC------CTTTTGCATCTTTTCTTTTGTTCAGCCTGGTCCTTCTGCCTGAAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4135658 101 - 4483953 CCTAATTTC--TACCATTCTTAGCGATGT--TGTGTAT-TCCCAGAACACCCAGCAGGCAC------CTTTTGCATCTTTTCCTTTGTTCAGCCTGGTCCTTCTGCCTGAAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24765838 101 + 33263144 CCTAATTTC--TACCATTCTTAGCGATGT--TGTGTAT-TCCCAGAACACCCAGCAGGCAC------CTTTTGCATCTTTTCCTTTGTTCAGCCTGGTCCTTCTGCCTGAAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14046593 101 - 14338769 CCTAATTTC--TACCATTCTTAGCGATGT--TGTGTAT-TCCCAGAACACCCAGCAGGCAC------CTTTTGCATCTTTTCCTTTGTTCAGCCTGGTCCTTCTGCCTGAAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 985709 101 + 1946073 CCTAATTTC--TACCGTTCTTAGCGATAT--TGTGTAT-TCCCAGAACACCCAGCAGGCAC------CTTTTACATCTTTTCCTTTGTTCAGCCTGGTCCTTTTGCCTGAAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012277 102 - 2117846 cctaacttc--TACCATTCTTAGCAATGTTCTGTGTGTGCCCTGGCAGGCCCAGTACGCAC------CTTTCGCATCTTTTCC-TTGTACAGCTCG-TCTTTCTGCCTGAAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8923710 103 - 16357246 cctaacttc--taccatactTAGCAATGTTCTGTGTATGCCCCGGCACACCCAGCATGCAC------CTTTCGCATCTTTTCCTTTGTACAGCTCG-TCTTTCTGCCTGAAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1407389 101 - 1807191 cctcacttc--taCCATTCTTAGCAACGTTCTGTGTATGCCCCGGCATGCCCAGCACGCAC------CTCTCATATCTTTTCCTTTGTACAGCTCG---TTTCAGCCTGAAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 38316 103 - 704494 cctaacttc--tactgttcttagcAATGTTCTGTGTATGCCCCGGCACATCCAGCACGCAC------CTTTCGCATCTTTTCCTTTGTACAGCTCG-TCTTTCTGCCTGAAT i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36346538 110 - 42659167 CCTAACCCC--TACTACTCTTAGTATCGTTGTATGTATTGATCAGCACACCCGGCACACACACAAATCTTCTGCCACCATTCCTATGTATGAGTTGGTCCTTCTATCTGAAT i otoGar3.GL873526 I 10 C 0 s canFam3.chr10 46154814 104 - 69331447 ctttATCCC--TCCTGTTCTTAGTCATGTTCTGTGTATTCCCCAGCGCCCCCTGCATACAC------CTTCTGCAGGCTTTCCTTTATTCTAGCTGGTTCTTCTGCCTGAGT i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 136584 105 + 1056298 cttaacctccacactgttctAAGGAAAGTTCTGTGTAT-CCCCAGTGCACCCTGTATGCAC------CTTTCGCTGAGTTTTCTTTGTGCTAGCTGGTCATTTTACATGAAT i dasNov3.JH570235 I 6 C 0 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I e micMur3.chr7 5777140 2605 + 108171978 I a score=53466.000000 s hg38.chr22_GL383582v2_alt 143727 4 + 162811 AATA--- s panTro5.chr22 28923283 4 + 37823149 AATA--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197847 4 + 50109623 AATA--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221045 4 + 4464012 AATA--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713865 4 - 115148730 aata--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84332891 4 + 92844088 AATA--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679257 4 - 96509753 aata--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176378 4 - 13098629 AATA--- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4135759 4 - 4483953 AATA--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24765939 4 + 33263144 AATA--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14046694 4 - 14338769 AATA--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 985810 4 + 1946073 AATA--- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012379 4 - 2117846 AATA--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8923813 4 - 16357246 AATA--- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1407490 4 - 1807191 AATA--- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 38419 4 - 704494 AATA--- i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5779745 4 + 108171978 AATA--- i micMur3.chr7 I 2605 C 0 s otoGar3.GL873526 36346648 4 - 42659167 ATTA--- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46154918 4 - 69331447 AATA--- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 136689 7 + 1056298 AATGTTA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82862696 10835 + 104043685 I e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I a score=28803.000000 s hg38.chr22_GL383582v2_alt 143731 2 + 162811 CC s panTro5.chr22 28923287 2 + 37823149 CC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197851 2 + 50109623 CC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221049 2 + 4464012 CC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713869 2 - 115148730 cc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84332895 2 + 92844088 CC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679261 2 - 96509753 cc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176382 2 - 13098629 CC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4135763 2 - 4483953 CC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24765943 2 + 33263144 CC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14046698 2 - 14338769 CC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 985814 2 + 1946073 CC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012383 2 - 2117846 CC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8923817 2 - 16357246 CC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1407494 2 - 1807191 CC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 38423 2 - 704494 CC i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5779749 2 + 108171978 TC i micMur3.chr7 C 0 C 0 s mm10.chr15 82873531 2 + 104043685 cc i mm10.chr15 I 10835 C 0 s canFam3.chr10 46154922 2 - 69331447 TT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 136696 2 + 1056298 TC i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36346652 0 - 42659167 C e proCoq1.NW_012136747v1 5139251 1591 - 6317780 I a score=530928.000000 s hg38.chr22_GL383582v2_alt 143733 32 + 162811 AGCTTTGCTGACATACCACTCACCTTTCAAGT- s panTro5.chr22 28923289 32 + 37823149 AGCTTTGCTGACATACCACTCACCTTTCAAGT- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197853 32 + 50109623 AGCTTTGCTGACATACCACTCACCTTTCAAGT- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221051 32 + 4464012 AGCTTTGCTGACATACCACTCACCTTTCAAGT- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713871 32 - 115148730 agctttgctgacataccagtcacctttcaagt- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84332897 32 + 92844088 AGCTTTGCTGACATACCACTCACCTGTCAAGT- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679263 32 - 96509753 agctttgctgacataccactcacctgtcaagt- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176384 32 - 13098629 AGCTTTGCTGACATACCACTCACCTGTCAAGT- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4135765 32 - 4483953 AGCTTTGCTGACATACTACTCACCTGTCAAGT- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24765945 32 + 33263144 AGCTTTGCTGACATACCACTCACCTGTCAAGT- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14046700 32 - 14338769 AGCTTTGCTGACATACCACTCACCTGTCAAGT- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 985816 32 + 1946073 AGCTTTGCTGACATACCACTCACCTGTCAAGT- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012385 32 - 2117846 AGCTTTGCTGATATATCACTCACCTTTCAAGT- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8923819 32 - 16357246 AGCTTTGCTTACATACCACTCACCTTTCAAGT- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1407496 32 - 1807191 AGCTTTGCTGACATACCACTCACCTTTCAAGT- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 38425 32 - 704494 AGCTTTGCTGACATACCACTCACCTTTCAAGT- i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5779751 32 + 108171978 AGCTTTGCTGACATACCACTTATCTTTCAAGT- i micMur3.chr7 C 0 I 140 s proCoq1.NW_012136747v1 5140842 32 - 6317780 AGCTTTGCTGACATACCACTCGTCTTTCAAGT- i proCoq1.NW_012136747v1 I 1591 C 0 s otoGar3.GL873526 36346652 31 - 42659167 -GCTTTGGGGACATACTTCTCACTTTTAAAGT- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82873533 32 + 104043685 atctcaccagccccACCATTTACTTTCAAAAT- i mm10.chr15 C 0 C 0 s canFam3.chr10 46154924 32 - 69331447 AGTTTTGCTGACATACCACTCACCTTTAAAGT- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 136698 32 + 1056298 AGCCTTGCTGAC-TCCCACTTACCCTTTAAAGG i dasNov3.JH570235 C 0 C 0 a score=1947748.000000 s hg38.chr22_GL383582v2_alt 143765 145 + 162811 CCAGTGCAAATCGCACTTTTCCCTTAACACCTTCCTAGAACACAAGCCATGATAAGCATTACC--AG-AGTTATCTACCCTTCTATTT-CCCCCACAGCGTGGGACC-TTAGTTCTCTTACTGCCACGCACAGAGCAAGCAATC-GAACAC s panTro5.chr22 28923321 145 + 37823149 CCAGTGCAAATTCCACTTTTCCCTTAACACCTTCCTAGAACACAAACCATGATAAGCATTACC--AG-AGTTATCTACCCTTCTATTT-CCCCCACAGCGTGGGACC-TTAGTTCTCTTACTGCCACGCACAGAGCAAGCAATC-GAACAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41197885 145 + 50109623 CCAGTGCAAATTCCACTTTTCCCTTAACACCTTCCTAGAACACAAACCATGATAAGCATTACC--AG-AGTTATCTACCCTTCTATTT-CCCCCACAGCGTGGGACC-TTAGTTCTCTTACTGCCACGCACAGAGCAAGCAATC-GAACAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221083 146 + 4464012 CTAGTGCAAATTCCACTTTTCCCTTAACACCTTCCTAGAACACAAACCATGATAAGCATTACC--AG-AGTTATCTACCCTTCAATTTCCCCCCACAGTGTGGGACC-TTAGTTCTCCTACTGCCACGCACAGAGCAAGCATTC-GAACAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106713903 145 - 115148730 ccagtgcaaattccacttttccctcaacaccttccttgaACACAAACCATGATGAGCATTACC--AG-AGTCATCTACCCTTCTATTT-TCCCCACAGTGTGGGACC-TTAGTTCTCCTACTGCCACGCACAGAGCAAGCATTC-AAACAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84332929 145 + 92844088 CCAGTGCAAATCCCACTTTTCCCTTAACACCTTCCTAGAACACAAACCATGATAAGCATTACC--AG-AGTTATCTACCCTTCTATTT-CCTCCACAGCGTGGGACC-TTAGTTCTCCTACTGCCACGTACAGAGCAAGCATTC-AAACAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679295 145 - 96509753 ccagtgcaaatcccacttttcccttaacaccttcctagaACACAAACCATGATAAGCATTACC--AG-AGTTATCTACCCTTCTATTT-CCTCCACAGCGTGGGACC-TTAGTTCTCCTACTGCCACGTACAGAGCAAGCATTC-AAACAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176416 145 - 13098629 CCAGTGCAAATCCCACTTTTCCCTTAACACCTTCCTAGAACACAAACCACGATAAGCATTACC--AG-AGTTATCTACCCTTCTATTT-CCTCCACAGCGTGGGACC-TTAGTTCTCCTACTGCCACGTACAGAGCAAGCATTC-AAACAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4135797 145 - 4483953 CCAGTGCAAATCCCACTTTTCCCTTAACATCTTCCTAGAACACAAACCATGATAAGCATTACC--AG-AGTTATCTACCCTTCTATTT-CCCCCACAGCGTGGGACC-TTAGTTCTCCTACTGCCACGTACAGAGCAAGCATTC-AAACAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24765977 145 + 33263144 CCAGTGCAAATCCCACTTTTCCCTTAACACCTTCCTAGAACACAAACCATGACAAGCATTACC--AG-AGTTATCTACCCTTCTATTT-CCCCCACAGCGTGGGACC-TTAGTTCTCCTACTGCCACGTACACAGCAAGCATTC-AAACAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14046732 145 - 14338769 CCAGTGCAAATCCCACTTTTCCCTTAACATCTTCCTAGAACACAAACCATGATAAGCATTACC--AG-AGTTATCTACCCTTCTATTT-CCCCCACAGCGTGAGACC-TTAGTTCTCCTACTGCCACGTACAGAGCAAGCATTC-AAACAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 985848 145 + 1946073 CCAGTGCAAATCCCACTTTTCCCTTAACACCTTCCTAGAACACAAACCATGATAAGCATTACC--AG-AGTTATCTACCCTTCTATTT-CCCCCACAGCGTGGGACC-TTAGTTCTCCTACTGCCACGTACAGAGCAAGCATTC-AAACAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012417 121 - 2117846 CCAGTGCAAATCCCACTTTTCCTTTACCACCTTCCTAGAACACAAACCATGATCAGCATGACC--AG-AGTTATCTACCTTTCCAT--------------------------TTCTCCTACTGCCACGCACATAGCAAGCATTG-GAACAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8923851 145 - 16357246 CCAGTGCAAATCCCACTTTTCCCTTAACACCTTCCTAGAACACAGACCATGATCAGCATGACC--AG-AGTTATCTACCTTTCTATTT-CTCCTACAGTATGGGACC-TTGGTTCTCCTACTACCACGCACACAGCAAGCATTG-GAACAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1407528 145 - 1807191 CCAGTGCAAGTCCCACTTTTCCCTTAACACCTTCTTAGAACGCAAACCATGATCAGCATGACC--AG-AGTTATCTACCTTTCTATTT-CTCCTACAGCACAGGACC-TTAGTTTTCCTACTGCCACGCACATAGCAAGCATTG-GAACAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 38457 141 - 704494 CCAGTGCAAATCCCACTTTTCCCTTAACACCTTCCTAATACACAAACCATGATCAGCATGACC--AG-AGTTATCTACCT----ATTT-CTCCTACAACATGGGACC-TTAGTTCTCCTACTGCCACGCACATAGCAAGCATTG-GAACAC i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5140874 146 - 6317780 CCAGTGC-AATCCCGCATTTTCCCTAATATCTCCCTGTAGCACAAACCATGGTCAGCATTATC-AAG-AGTTACTGACCCTTTGATTT-CCACCACAGCGTGGGGCC-TTGGTTCTCCTACTGCCATGTACGCAGCAAACATTCAAAACAC i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36346683 144 - 42659167 CCAATGCAAACCCCACATCTTCCCTAACATCTCCCTACATCA-AAAACATGCTCAACATTATC--AG-AGTTACTGATGTTCCTATTT-TCCCCCCAGTGTGGGACC-TTGGTTCTCTTCCTGCCACATACACAGCAGGCATTC-AAATGC i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82873565 143 + 104043685 CCCACAGAAAT----CTCTGACATCAACACCTACCTAGAGCATAAGTCATACACAGCACTGTA--AGAAGTTATTTTCCCCTTAACTT-TCTCCGCAGTGTAGAACCTTTGGTTCTCCTAAGACTGAGCACAGAGCATGCATTC-AAATAC i mm10.chr15 C 0 C 0 s canFam3.chr10 46154956 146 - 69331447 CTAGTGCAAATTCTACTTTCCCCCTAACTCCTCCCTATGGCACATACCATGGTCAGCATTATCTGAG-AGCTATTTACCC-TCTATTT-CCCCAGCAGCTTGGGACC-TTGGCTTGCCTACTGCCATGCACACAGCAAGCATTC-AAATGC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 136730 133 + 1056298 CCAGAGCAAATCCCACTTTCCCCCCAAATCCTGTCCAGAGCACATACCACAGGCAGTATTATC--TA-GGTTATTTTCCATTCCATTT-CC-------CGAAGGCTA-GGGGTTCCCCTACTGCCACACA-----CAAATATGA-GAATGT i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5779783 140 + 108171978 I a score=2943800.000000 s hg38.chr22_GL383582v2_alt 143910 194 + 162811 TGGGTGAATTAAGTTGACAATATAAATTCTCTTTCTGACAAATGTAAAGGTAACAGATGAAGACCAAAAGTTTT--------------------------------------------------------AATCTGTGAGGAAAATTAAT-----------ACCAAG-AAAGGGTTTCCATAAT---CCCTACCTGCATTCTCTGC----TCTGAACCTCACCTCTCACTGAGGCATAAGGAAAGGCAGGT----TAATTTTCAC-CTCTTCCA s panTro5.chr22 28923466 194 + 37823149 TGGGTGAATTAAGTTGACAATATAAATTCTCTTTCTGACAAATGTAAAGGTAACAGATGAAGACCAAAAGTTTT--------------------------------------------------------AATCTGTGAGGAAAATTAAT-----------ACCAAG-AAAGGGTTTCCATAAT---CCCTACCTGCATTCTCTGC----TCTGAACCTCACCTCTCACTGAGGCGTAAGGAAAGGCAGGT----TAATTTTCAC-CTCTTCCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198030 194 + 50109623 TGGGTGAATTAAGTTGACAATATAAATTCTCTTTCTGACAAATGTAAAGGTAACAGATGAAGACCAAAAGTTTT--------------------------------------------------------AATCTGTGAGGAAAATTAAT-----------ACCAAG-AAAGGGTTTCCATAAT---CCCTACCTGCATTCTCTGC----TCTGAACCTCACCTCTCACTGAGGCGTAAGGAAAGGCAGGT----TAATTTTCAC-CTCTTCCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221229 194 + 4464012 TGGGTGAATTAAGTTGACAATATAAATTCTCTTTCTGACAAATGTAAAGGTAACAGATGAAGACCAAAAGTTTT--------------------------------------------------------AATCTGTGAGGAAAATTAAT-----------ACCAAG-AAAGGGTTTCCATAAT---CCCTACCTGCATTCTCTGC----TCTGAACCTTACCTCTCACTGAGGTGTAAGGAAAGGCAGGT----TAATTTTCAC-CTATTCCA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106714048 190 - 115148730 TGGGTGAATTAAGTTGACAATATAAATTC----TCTGACAAATGTAAAGATAACAGATGAGGACCAAAAGTTTT--------------------------------------------------------AATCTGTGAGGGAAATTAAT-----------ACCAAG-AAAGGGTTTCCATAAT---CCCTACCCTCATTCTCTGC----TCTGAACCTCACCTCTCATTGAGGCATAAGGAAACGCAGGT----TAATTTTCAC-CTCTTCCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84333074 194 + 92844088 TGGGTGAATTAAGCTGACAATATAAATTCTCTTTCCGACAAACATAAAGGTAACAGATGAAGACCAAAAATTTT--------------------------------------------------------AATCTGTGAAGAAAATGAAT-----------ATCAAG-AAAGGGTTTCCATAAT---CCCTCCCCTCATTCTCTGC----TCTGAACCTCACCTCTCACTGAAGCATAAGGAAAGACAGGT----TAATTTTCAC-CTCTTCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679440 194 - 96509753 TGGGTGAATTAAGCTGACAATATAAATTCTCTTTCCGACAAACATAAAGGTAACAGATGAAGACCAAAAATTTT--------------------------------------------------------AATCTGTGAAGAAAATGAAT-----------ATCAAG-AAAGGGTTTCCATAAT---CCCTCCCCTCATTCTCTGC----TCTGAACCTCACCTCTCACTGAAGCATAAGGAAAGACAGGT----TAATTTTCAC-CTCTTCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176561 194 - 13098629 TGGGTGAATTAAGCTGACAATATAAATTCTCTTTCCGACAAACATAAAGGTAACAGATGAAGACCAAAAATTTT--------------------------------------------------------AATCTGTGAAGAAAATGAAT-----------ATCAAG-AAAGGGTTTCCATAAT---CCCTCCCCTCATTCTCTGC----TCTGAACCTCACCTCTCACTGAAGCATAAGGAAAGACAGGT----TAATTTTCAC-CTCTTCCA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4135942 193 - 4483953 TGGGTGAATTAAGCTGACAATATAAATTCTCTTTCCGACAAACATAAAGGTAACAGATGAAGACCAAAAATTTT--------------------------------------------------------AATCTGTGAAGAAAATGAGT-----------ATCAAG-AAAGGGTTTCCATAAT---CCCTCCCCTCA-TCTCTGC----TCTGAACCTCACCTCTCACTGAAGCATAAGGAAAGACAGGT----TAATTTTCAC-CTCTTCCA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24766122 194 + 33263144 TGGGTAAATTAAGTTGACAATATAAATTCTCTTTCCAACAAACATAAAGGTAACAGATGAAGACCAAAAATTTT--------------------------------------------------------AATCTGTGAAGAAAATGAAT-----------ATCAAG-AAAGGGTTTCCATAAT---CCCTCCCCTCATTCTCTGC----TCTGAACCTCACCTCTCACTGAAGCATAAGGAAAGACAGGT----TAATTTTCAC-CTCTTCCA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14046877 193 - 14338769 TGGGTGAATTAAGCTGACAATATAAATTCTCTTTCCGACAAACATAAAGGTAACAGATGAAGACCAAAAATTTT--------------------------------------------------------AATCTGTGAAGAAAATGAAT-----------ATCAAG-AAAGGGTTTCCATAAT---CCCTCCCCTCA-TCTCTGC----TCTGAACCTCACCTCTCACTGAAGCATAAGGAAAGACAGGT----TAATTTTCAC-CTCTTCCA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 985993 194 + 1946073 TGGGTGCATTAAGTTGACAATATAAATTCTCTTTCTGACAAACATAAAGGTAACAGATGAAGACCAAAAATTTT--------------------------------------------------------AATCTGTGAAGAAAATTAAT-----------ATCAAG-AAAGGGTTTCCATAAT---CCCTCCCCTCATTCTCTGC----TCTGAATCTCACCTCTCACTGAAGCATAAGGAAAGGCAGGT----TAATTTTCAC-CTCTTCCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012538 198 - 2117846 TGGGTGAAGTAAGTTGACAACATAAATTCTCTTTCTGACAAACGTAAAGGTAACAGATGAAGACCAAAAGTTTT--------------------------------------------------------AATCTGTGAGGAATATTCAT-----------ACCAAG-AAAGGGTTTCCATAAT---CCCTCCCCTCATTCTCTGCTCTGTCTGAACCTCACCATTCATTGAAGCATAAAGAGAGGCAGAT----TAATTTTCAC-CTCTTCCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8923996 194 - 16357246 TGGGTGAATTAAGTTCACAACATAAATTCTCTTTCTGACAAACTCAAAGGTAACAGATGAAGACCAAAAGTTTT--------------------------------------------------------AATCCGTGAGGAATATTAAT-----------ACCAAG-AAAGGGTTTCCATAAT---CCCTCCCCTCATTCTCTGC----TCTGAACCTCACCATTCATTGAAGCATAAGGAAAGGCAGAT----TAATTTTCAC-CTCTTCCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1407673 194 - 1807191 TGGGTGAATTAAGTTGACAACATAAATTCTCTTTCTAACAAACGTAAAGGTAACAGATGAAGACCAAAAGTTTT--------------------------------------------------------AATCTGTGAGGAATATTAAT-----------ACCAGG-AAAGGGTTTCCACAAT---CCCTCCCCTCATTCTCTGC----TCTGAACCTCACCATTCATTGAAGCATAAGGTGAGGCAGAT----TAATTTTCAC-CTCTTCCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 38598 194 - 704494 TGGGTGAATTAAGTTGACAACATAAATGCTCTTTCTGACAAACGTAAAGGTAACAGATGAAGACCAAAAGTTTT--------------------------------------------------------AATCTGTGAGGAGTATTAAT-----------ACCAAG-AAAGAGTTTCCATAAT---CCCTCCCCTCATTCTCTGC----TCTGAAACTCACCATTCATTGAAGCATAAGGAGAGGCAGAT----TAATTTTCAC-CTCTTCCA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5779923 197 + 108171978 TGGATGAATGAGGTTGACAACATAAATTCTCCTTCTGACAAAAGTCAAGAAAACAGATGAAGACCAAAAGTTTT--------------------------------------------------------CATTTATGAGAGAAATCCAT-----------ACCAAG-AAAGGGTTTCTATAATCCCTCCCCCCCTCATTCTCTGC----TTTGAACCTTGCCTCTCTTTAAAGCATAAGGAGAGGCAAAT----TAATTTTCAC-CTTTTCCA i micMur3.chr7 I 140 I 544 s proCoq1.NW_012136747v1 5141020 197 - 6317780 TGGATGAATGAGGTTGACAATATAAATTCTCCTTCTGACAAAAGTAAAGAAAACAGATGAAGACCAAAAGTTTT--------------------------------------------------------CATTTGTGAGGGAAATTCAT-----------ACCAAG-AAAGGGTTTCTATAAT-CCTTCCCCCCTCATTCTCTGC----TTTGAACGTTGCCTTTCATTAAAGCATAAGGAGAGGCAAGT----TAATTTTCACTCTCTTCCA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36346827 190 - 42659167 CGGATGAATGAGGTTGACAACATCAATT---CTTCAGACAAAAGTAAAGACAACAGATGAGAACCAAAAGTTTT--------------------------------------------------------CATCTGTGAGGAAAATTGAT-----------ACCAAGAAAAGGGTCTCTGTAAT---TCTTCCCTTCACTCTCTGC----TTTGAACCTCACCTTTCATTAAA-CAC-AGGAGAGGCAGGC----TAAACTTCAT-CTTTTCCA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82873708 253 + 104043685 TGG------TAATCTGGCAGTACAATCCATCTTTTTTATAAAAACAAAGCTCACATGTGAAGGCCAACATTTTTAGAATGGGGATGTAACTTAGTAAGCACAAAACAAACAAACAAACTAGTTTTACTTCAATCTATAAGAGAAACTAACAGGGAAAAAAAAAAAAA-AAAAGGTTTCTAT------CCCTGCCTCCAATCTCTGC----TTTGAACGTCTGAACT--TTGAAGTATAAGGAGAAGCGGGTTGGATATTTTTAAC-CTTATCT- i mm10.chr15 C 0 C 0 s canFam3.chr10 46155102 192 - 69331447 TGGGTGAATCAGGCTGACAATATCAATTCTCTTTCTGACAAAAGTAAAGA-AACAGATGGAGACCAAAAGTTTT--------------------------------------------------------CATCTGTGAGGGAAGTTAAT-----------CCTGAG-AACAGGTTTCTATAAT---CCCT-CCTTCACTCCCTGC----TTTGAGCCTCACCTCTAGCTGAAGCATAAGGAGAGGACGAT----TGATCTACAC-TTTTTCTA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 136863 167 + 1056298 TAGGTAAATTAAGTGGCAAATATAAATTGTTCTTCTGACAAAATAAAAGATAACAGGTGGAGACTCAAAGTTTT--------------------------------------------------------AATCT--------------------------ATGAGG-AAAGA--------------TTCTCCCCTTGGTCCCTGC----TTTGAGCCTCACATCTCATTGAAGCCTGA-GAGCAGCAAGC----TAATCTTCAC-CTCTTCCA i dasNov3.JH570235 C 0 C 0 a score=95405.000000 s hg38.chr22_GL383582v2_alt 144104 7 + 162811 AAAAGTG s panTro5.chr22 28923660 7 + 37823149 AAAAGTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198224 7 + 50109623 AAAAGTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221423 7 + 4464012 AAAAGTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106714238 7 - 115148730 AAAAGTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84333268 7 + 92844088 AAAAGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679634 7 - 96509753 AAAAGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176755 7 - 13098629 AAAAGTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136135 7 - 4483953 AAAAGTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24766316 7 + 33263144 AAAAGTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047070 7 - 14338769 AAAAGTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986187 7 + 1946073 AAAAGTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012736 7 - 2117846 CAAAGTG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924190 7 - 16357246 CAAAGTG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1407867 7 - 1807191 CAAAGTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 38792 7 - 704494 CAAAGTG i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5141217 7 - 6317780 CAAAGTG i proCoq1.NW_012136747v1 C 0 I 217 s otoGar3.GL873526 36347017 7 - 42659167 CAAAGTG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82873961 7 + 104043685 ACAAGGA i mm10.chr15 C 0 C 0 s canFam3.chr10 46155294 7 - 69331447 CGAAGTC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 137030 7 + 1056298 CCAAGTG i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5780120 544 + 108171978 I a score=780678.000000 s hg38.chr22_GL383582v2_alt 144111 62 + 162811 GCTTTACATAATAAATC-----CCACTTCTGAAGAATAAAAGCTACC---TAACTT-----------GTTATTAAAAATGT s panTro5.chr22 28923667 62 + 37823149 GCTTTACATAATAAATC-----CCACTTCTGAAGAATAAAAGCTACC---TAACTT-----------GTTATTAAAAATGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198231 62 + 50109623 GCTTTACATAATAAATC-----CCACTTCTGAAGAATAAAAGCTACC---TAACTT-----------GTTATTAAAAATGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221430 62 + 4464012 GCTTTACATAATAAATT-----CCACTTCTGAGGAATAAAAGCTACC---TAACTT-----------GTTATTAAAAATGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106714245 60 - 115148730 GCTTTACATAATAAATC-----CCACTTCTGAAGAAT--AAGCTACC---TAACTT-----------GTTATTAAAAATGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84333275 62 + 92844088 GCTTTACATAATAAATC-----CCACTTCTGAAGAATAAAAACTACC---TAACTT-----------GTTATTAAAAATGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679641 62 - 96509753 GCTTTACATAATAAATC-----CCACTTCTGAAGAATAAAAACTACC---TAACTT-----------GTTATTAAAAATGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176762 59 - 13098629 GCTTTAC---ATAAATC-----CCACTTCTGAAGAATAAAAACTACC---TAACTT-----------GTTATTAAAAATGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136142 62 - 4483953 GCTTTACATAATAAATC-----TCACTTCTGAAGAATAAAAACTACC---TAACTT-----------GTTATTAAAAATGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24766323 62 + 33263144 GCTTTACATAATAAATC-----TCACTTCTGAAGAATAAAAACTACC---TAACTT-----------GTTATTAAAAATGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047077 62 - 14338769 GCTTTACATAATAAATC-----TCACTTCTGAAGAATAAAAACTACC---TAACTT-----------GTTATTAAAAATGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986194 62 + 1946073 GCTTTACATAATAAATC-----CCACTTCTGAAGAATAAAAACTACC---TAACTT-----------GTTATTAAAAATGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012743 62 - 2117846 GCTTTACCTAATAAATC-----CCACTTCTGAAGAATAAAAGCTACC---AAACTT-----------GTTATTAAAAATGT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924197 62 - 16357246 GCTTTACATAATAAATC-----CCACTTCTGAAGAATAAAAGCTACC---TAACTT-----------GTTATTAAAAATGT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1407874 62 - 1807191 GCTTTACATAATAAATC-----CCACTTCTGAAGAATAAAAGCTACC---TAACTT-----------GTTAATAAAAATGt i cebCap1.NW_016107750v1 C 0 I 59 s aotNan1.NW_018512389v1 38799 62 - 704494 GCTTTATATAATAAATC-----CCACTTCCGAAGAATAAAAGCTACC---TAACTT-----------GTTATTAAAAATGT i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347024 63 - 42659167 GCTGAACATAACACATC----ACCACTTCCGATAAATAAAAATGATT---TAACTT-----------GCTATTAAAAATGT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82873968 64 + 104043685 ACTAAATGTAATAAATAGGTCACCACTT--GATAGGTAAAAACTGCT---TTACTT-----------ACTATT-AAAATGT i mm10.chr15 C 0 C 0 s canFam3.chr10 46155301 76 - 69331447 GCTGAACACAACAGTTA-----CTACTTCTGATAAATTAAAACTAACAAATAACATAAATCACAAGGGTTTTTAAAAGGTT i canFam3.chr10 C 0 I 4 s dasNov3.JH570235 137037 63 + 1056298 GCTGGGCAGAACAGATC----ACCACCTCTGATGTCTGAAAGTTGCT---TAATTT-----------ATTGCTGAAAGTGT i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5141224 217 - 6317780 I e micMur3.chr7 5780120 544 + 108171978 I a score=151314.000000 s hg38.chr22_GL383582v2_alt 144173 20 + 162811 AAGCAATG--AGAAT----------------------------------AAAAAGG--------------- s panTro5.chr22 28923729 20 + 37823149 AAGCAATG--AGAAT----------------------------------AAAAAGG--------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198293 20 + 50109623 AAGCAATG--AGAAT----------------------------------AAAAAGG--------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221492 20 + 4464012 AAGCAATG--AGAAT----------------------------------AAAAAGG--------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106714305 19 - 115148730 AAGCAATG--AGAAT-----------------------------------AAAAGG--------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84333337 20 + 92844088 AAGCAATG--AGAAT----------------------------------AAAAAGG--------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679703 20 - 96509753 AAGCAATG--AGAAT----------------------------------AAAAAGG--------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176821 20 - 13098629 AAGCAATG--AGAAT----------------------------------AAAAAGG--------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136204 20 - 4483953 AAGCAATG--AGAAT----------------------------------AAAAAGG--------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24766385 20 + 33263144 AAGCAATG--AGAAT----------------------------------AAAAAGG--------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047139 20 - 14338769 AAGCAATG--AGAAT----------------------------------AAAAAGG--------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986256 20 + 1946073 AAGCAATG--AGAAT----------------------------------AAAAAGG--------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012805 20 - 2117846 AAATAATG--AGAAT----------------------------------TAAAAGT--------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924259 20 - 16357246 AAATAATG--AGAAT----------------------------------AAAAAGT--------------- i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512389v1 38861 20 - 704494 AAATAATG--AGAAT----------------------------------AAAAAGT--------------- i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347087 16 - 42659167 ---AAATG--TGATC----------------------------------AAAAGG---------------- i otoGar3.GL873526 C 0 I 8 s mm10.chr15 82874032 22 + 104043685 AAATAATGCCAAACA----------------------------------AAAAAGG--------------- i mm10.chr15 C 0 I 15 s canFam3.chr10 46155381 53 - 69331447 AGGTTCTG--AAAATTTGGTACCTTTTTCCAAAGGCTCTGACCTTTGAAAGAAAG---------------- i canFam3.chr10 I 4 I 26 s dasNov3.JH570235 137100 31 + 1056298 ----AGTG--AGAAT----------------------------------CGAAGAGTTGGAAAAAAAACAA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5141224 217 - 6317780 I e micMur3.chr7 5780120 544 + 108171978 I e cebCap1.NW_016107750v1 1407936 59 - 1807191 I a score=245739.000000 s hg38.chr22_GL383582v2_alt 144193 39 + 162811 TTTCTT--TAGAG----TTTTTAAAAT----TACTTT-----CAATG---------------------------------------------------------------------------------CCTCTAG s panTro5.chr22 28923749 39 + 37823149 TTTCTT--TAGAG----TTTTTAAAAT----TACTTT-----CAATG---------------------------------------------------------------------------------CCTCTAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198313 39 + 50109623 TTTCTT--TAGAG----TTTTTAAAAT----TACTTT-----CAATG---------------------------------------------------------------------------------CCTCTAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221512 40 + 4464012 TTTCTT--TAGAG---TTTTTTAAAAT----TACTTT-----CAATG---------------------------------------------------------------------------------CCTCTAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106714324 39 - 115148730 TTTCTT--TAGAG----TTTTAAAAAT----TACTTT-----CAATG---------------------------------------------------------------------------------CCTCTAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84333357 39 + 92844088 TTTCTT--TAGAG----TTTTTTAAAT----TACTTT-----CAATG---------------------------------------------------------------------------------CCTCTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679723 39 - 96509753 TTTCTT--TAGAG----TTTTTTAAAT----TACTTT-----CAATG---------------------------------------------------------------------------------CCTCTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176841 39 - 13098629 TTTCTT--TAGAG----TTTTTTAAAT----TACTTT-----CAATG---------------------------------------------------------------------------------CCTCTGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136224 41 - 4483953 TTTCTTAATAGAG----TTTTTTAAAT----TACTTT-----CAATG---------------------------------------------------------------------------------CCTCTGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24766405 3 + 33263144 TTT------------------------------------------------------------------------------------------------------------------------------------ i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047159 39 - 14338769 TTTCTT--TAGAG----TTTTTTAAAT----TACTTT-----CAATG---------------------------------------------------------------------------------CCTCTGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986276 39 + 1946073 TTTCTT--TAGAG----TTTTTAAAAT----TACTTT-----CAATG---------------------------------------------------------------------------------CCTCTGA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012825 33 - 2117846 TTTCTT--TAAAG----TTTTTAAAAT----TACTTT-----CAAAG---------------------------------------------------------------------------------C------ i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924279 37 - 16357246 TTTCTT--TAAAG----TTTTTAAAAT----TACTTT-----CAAAG---------------------------------------------------------------------------------C--CTGA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1407995 37 - 1807191 TCCCTT--TAAAG----TTTTTAAAAT----TACTTT-----CAAAG---------------------------------------------------------------------------------C--CTGA i cebCap1.NW_016107750v1 I 59 C 0 s aotNan1.NW_018512389v1 38881 37 - 704494 TTTCTT--TAAAG----TTTTTAAAAT----TACTTT-----CAAAG---------------------------------------------------------------------------------C--CTGA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347111 44 - 42659167 TTTTAA--AAGAG----TATTGAAAAT----TACTTTCTTTCCAATG---------------------------------------------------------------------------------CCTCTAA i otoGar3.GL873526 I 8 C 0 s mm10.chr15 82874069 42 + 104043685 TTTCCT--TAAAAGGGCTTTTGAAAAT----TACTTT-----CCA-G---------------------------------------------------------------------------------AGGCTGA i mm10.chr15 I 15 C 0 s canFam3.chr10 46155460 120 - 69331447 tttttt--ttAAG----ATTTTTAAAT----TTCTTT-----Tagggagagaaagagcaagctgagcagggagtttgatgcaggactcgatcccaggacccaggatcatgacctgagtcaaaggcagacatttga i canFam3.chr10 I 26 I 19 s dasNov3.JH570235 137131 43 + 1056298 GTTTTA--AAGAG----TTTTAAAAATTAGCTACATC-----CAAAG---------------------------------------------------------------------------------GTTCTGA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5141224 217 - 6317780 I e micMur3.chr7 5780120 544 + 108171978 I a score=308316.000000 s hg38.chr22_GL383582v2_alt 144232 32 + 162811 CCCTT--GAAAGAAAGCAC---TT----AAGTTTAGTACAA s panTro5.chr22 28923788 32 + 37823149 CCCTT--GAAATAAAGCAC---TT----AAGTTTAGTACAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198352 32 + 50109623 CCCTT--GAAAGAAAGCAC---TT----AAGTTTAGTACAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221552 32 + 4464012 CCCTT--GAAAGAAAGCAC---TT----AAGTTTAGTACAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106714363 32 - 115148730 CCCTT--GAAAGAAAGCAC---TT----AAGTTTAGTACAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84333396 32 + 92844088 CCCTT--GAAAGAAAGCAC---TT----AAGTTTAGTACAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679762 32 - 96509753 CCCTT--GAAAGAAAGCAC---TT----AAGTTTAGTACAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176880 27 - 13098629 CCCTT--GAAAGAAAGCAC------------TTTAGTACAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136265 32 - 4483953 CCCTT--GAAAGAAAGCAC---TT----AAGTTTAGTACAA i cerAty1.NW_011999588v1 C 0 C 0 s manLeu1.NW_012102031v1 14047198 32 - 14338769 CCCTT--GAAAGAAAGCAC---TT----AAGTTTAGTACAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986315 32 + 1946073 CCCTT--GAAAGAAAGCAC---TT----AAGTTTAGTACAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012858 17 - 2117846 -----------------AC---TT----AATTATAATACAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924316 28 - 16357246 CCCCT--G----AAAGTAC---TT----AATTATAATACAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408032 28 - 1807191 CCCCT--G----AAAGCAC---TT----AATTATAATACAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 38918 28 - 704494 CCCTT--G----AAAGCAC---TT----AATTATAATACAA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5780664 32 + 108171978 CCCTT--GAAAGAAAGCAC---TT----AACTTTAGTACAA i micMur3.chr7 I 544 I 146 s otoGar3.GL873526 36347155 32 - 42659167 TACTT--GAAAGAAAGCAC---TT----AAATCTAGCACAA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82874111 32 + 104043685 CCATT--AAAAGCAAGCTT---CT----ACATGTAGTTCAA i mm10.chr15 C 0 C 0 s canFam3.chr10 46155599 35 - 69331447 acccc--AAAAGAAAGCACTTTTT----AAGTTCAGCATAA i canFam3.chr10 I 19 C 0 s dasNov3.JH570235 137174 38 + 1056298 CCCTCAGGAAAAAGAGCAC---TTTTTAAGGTTTATTATGA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5141224 217 - 6317780 I e chlSab2.chr19 24766408 0 + 33263144 C a score=599552.000000 s hg38.chr22_GL383582v2_alt 144264 56 + 162811 ACAAAATGTAAAAACATGAAAACTTACTTTCCCTAT-ACATAAACATGGAGACACAA s panTro5.chr22 28923820 56 + 37823149 ACAAAATGTAAAAACATGAAAACTTACTTTCCATAT-ACATAAACATGGAGACACAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198384 56 + 50109623 ACAAAATGTAAAAACATGAAAACTTACTTTCCATAT-ACATAAACATGGAGACACAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221584 56 + 4464012 ACAAAATGTAAAAACATGAAAACTTACTTTCCATAT-ACATAAACATGGAGACACAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106714395 56 - 115148730 ACAAAATGTAAAAACATGAAAAGTTACTTTCCATAT-ACATAAACATGGAGACACAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84333428 57 + 92844088 ACGAAATGCAAAAACATGCAAAGTTACTTTCCATATAACATAAACATGGAGACACAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679794 57 - 96509753 ACGAAATGCAAAAACATGCAAAGTTACTTTCCATATAACATAAACATGGAGACACAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176907 56 - 13098629 ACGAAATGCAAAAACATGCAAAGTTACTTTCCATAT-ACATAAACATGGAGACACAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136297 56 - 4483953 ACGAAATGCAAAAACATGCAAAGTTACTTTCCATAT-ACATAAACATGGAGACACAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24766408 30 + 33263144 --------------------------CTTTCCATAT-ACATAAACATGGAGACACAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047230 56 - 14338769 ACGAAATGCAAAAACATGCAAAGTTACTTTCCATAT-ACATAAACATGGAGACACAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986347 56 + 1946073 ACGAAATGCAAAAACATGCAAGGTTACTTTCCATAT-ACATAAACATGGAGACACAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012875 56 - 2117846 ACAACATGTAAAAATACTAAAAGTTATTTTCCATAT-ACATAAACATGGAGACACAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924344 56 - 16357246 ACAACATGTAAAAATACTAGAAGTTACTTTCCAAAT-ACATAAACATAGAGACACAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408060 56 - 1807191 ACAACATGTAAAAATACTAAAAGTTATTTTCCATAT-ACATAAACATGGAGACACAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 38946 56 - 704494 ACAACATGTAAAAATACTAAAAGTTATTTCCCATAT-ACATAAACATGGAGACACAG i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347187 53 - 42659167 -TGAAATGTAAAAATACT--AAGTTACTTTGTATGT-ACATAAACACAGAGATACAG i otoGar3.GL873526 C 0 I 2 s mm10.chr15 82874143 39 + 104043685 -CAAAATATAAAAACACTAAGAGCTA-----CATGT------------GGGACACTA i mm10.chr15 C 0 C 0 s canFam3.chr10 46155634 48 - 69331447 -AGAAATGCAAAAA-ATATTAAACGATCTCACATAT-ACATA------GAGACACAT i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 137212 55 + 1056298 -AGAAATGTAAATACACTAAGACATACTTTACATAC-ACATAAACATGGAGACACAG i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5141224 217 - 6317780 I e micMur3.chr7 5780696 146 + 108171978 I a score=469920.000000 s hg38.chr22_GL383582v2_alt 144320 32 + 162811 AACCAGTGAAACAGACACGTTTAAAATTCAAA s panTro5.chr22 28923876 32 + 37823149 AACCAGTGAAACAGACACGTTTAAAATTCAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198440 32 + 50109623 AACCAGTGAAACAGACACGTTTAAAATTCAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221640 32 + 4464012 AACCAGTGAAACAGACGCGTTTAAAATTCAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106714451 32 - 115148730 AACCAGTGAAACAGACACGTTTAAAATTCAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84333485 31 + 92844088 AACCAGTGAAACAGACACATTT-AAATTCAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679851 31 - 96509753 AACCAGTGAAACAGACACATTT-AAATTCAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7176963 31 - 13098629 AACCAGTGAAACAGACACATTT-AAATTCAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136353 31 - 4483953 AACCAGTGGAACAGACACATTT-AAATTCAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24766438 31 + 33263144 AACCAGTGAAACAGACACATTT-AAATTCAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047286 31 - 14338769 AACCAGTGAAACAGACACATTT-AAATTCAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986403 31 + 1946073 AACCAGTGAAACAGAGACATTT-AAATTCAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2012931 32 - 2117846 AACCTGTGAAACAGACACATTTAAAATTCAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924400 32 - 16357246 AACCTGGGAAACAGATACATTTAAAATTCAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408116 32 - 1807191 AACCTGTGAAACAGACACATTTAAAATTCAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39002 32 - 704494 AACCTGTGAAACAGACACTTTTAAAATTCAAA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5780842 32 + 108171978 AACCAGTGAAACAGACATGTTCAAAATTCAAA i micMur3.chr7 I 146 C 0 s proCoq1.NW_012136747v1 5141441 32 - 6317780 AACCAGTGAAACAGACATGTTTAAAATTCAAA i proCoq1.NW_012136747v1 I 217 I 192 s otoGar3.GL873526 36347242 32 - 42659167 AACCAGTGAAACAGACATGTTTTAAATCCAAA i otoGar3.GL873526 I 2 C 0 s mm10.chr15 82874182 17 + 104043685 ---------------GATGTTTAGGACTCAAA i mm10.chr15 C 0 C 0 s canFam3.chr10 46155683 32 - 69331447 AGCTACTGAACCAGATGTGTTTAAAATGCAAA i canFam3.chr10 I 1 I 20 s dasNov3.JH570235 137267 32 + 1056298 AGTCAGCAGATCAGACATGCTTAAAATGCAAA i dasNov3.JH570235 C 0 C 0 a score=113751.000000 s hg38.chr22_GL383582v2_alt 144352 8 + 162811 ATGCTC-TT s panTro5.chr22 28923908 8 + 37823149 ATGCTC-TT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198472 8 + 50109623 ATGCTC-TT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221672 8 + 4464012 ATGCTC-TT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106714483 8 - 115148730 ATGCTC-TT i nomLeu3.chr7b C 0 I 3 s rheMac8.chr10 84333516 8 + 92844088 ATGCTC-TT i rheMac8.chr10 C 0 I 3 s macFas5.chr10 87679882 8 - 96509753 ATGCTC-TT i macFas5.chr10 C 0 I 3 s macNem1.NW_012012688v1 7176994 8 - 13098629 ATGCTC-TT i macNem1.NW_012012688v1 C 0 I 3 s cerAty1.NW_011999588v1 4136384 8 - 4483953 ATGCTC-TT i cerAty1.NW_011999588v1 C 0 I 3 s chlSab2.chr19 24766469 8 + 33263144 ATGCTC-TT i chlSab2.chr19 C 0 I 3 s manLeu1.NW_012102031v1 14047317 8 - 14338769 ATGCTC-GT i manLeu1.NW_012102031v1 C 0 I 3 s colAng1.NW_012115588v1 986434 8 + 1946073 ATGCTC-TT i colAng1.NW_012115588v1 C 0 I 3 s calJac3.chrUn_GL286373 2012963 8 - 2117846 ATGCTC-TT i calJac3.chrUn_GL286373 C 0 I 3 s saiBol1.JH378157 8924432 8 - 16357246 ATGCTC-TT i saiBol1.JH378157 C 0 I 3 s cebCap1.NW_016107750v1 1408148 8 - 1807191 ATGCTC-TT i cebCap1.NW_016107750v1 C 0 I 3 s aotNan1.NW_018512389v1 39034 8 - 704494 ATGCTC-TT i aotNan1.NW_018512389v1 C 0 I 3 s micMur3.chr7 5780874 9 + 108171978 GAGCTCTTT i micMur3.chr7 C 0 I 7 s otoGar3.GL873526 36347274 8 - 42659167 AAGCTC-TT i otoGar3.GL873526 C 0 I 7 s mm10.chr15 82874199 8 + 104043685 AAGCTC-TT i mm10.chr15 C 0 I 2 s canFam3.chr10 46155735 8 - 69331447 AAGGTC-TT i canFam3.chr10 I 20 I 9 s dasNov3.JH570235 137299 8 + 1056298 CAGGTC-Tt i dasNov3.JH570235 C 0 I 217 e proCoq1.NW_012136747v1 5141473 192 - 6317780 I a score=695305.000000 s hg38.chr22_GL383582v2_alt 144360 46 + 162811 AACTGACCAC-ATCCTAATTTACGAGCAGAAGTCGAGTCCAAACAAA s panTro5.chr22 28923916 46 + 37823149 AACTGACCAC-ATCCTAATTTACGAGCAGAAGTCGAGTCCAAACAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198480 46 + 50109623 AACTGACCAC-ATCCTAATTTACGAGCAGAAGTCGAGTCCAAACAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221680 46 + 4464012 AACTGACCAC-ATCCTAATTTACGAGCAGAAGTCGAGTCCAAACAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106714494 43 - 115148730 AACTGACCGC-ATCTGAATTTATGAGCAGAAGTCGAGTCCAAAC--- i nomLeu3.chr7b I 3 C 0 s rheMac8.chr10 84333527 46 + 92844088 AACTGACCAC-ATCTGAATTTATGAGCAGAAGTTGAGTCCAAACAAA i rheMac8.chr10 I 3 C 0 s macFas5.chr10 87679893 46 - 96509753 AACTGACCAC-ATCTGAATTTATGAGCAGAAGTTGAGTCCAAACAAA i macFas5.chr10 I 3 C 0 s macNem1.NW_012012688v1 7177005 46 - 13098629 AACTGACCAC-ATCTGAATTTATGAGCAGAAGTTGAGTCCAAACAAA i macNem1.NW_012012688v1 I 3 C 0 s cerAty1.NW_011999588v1 4136395 46 - 4483953 AACTGACCAC-ATCTGAATTTATGAGCAGAAGTTGAGTCCAAACAAA i cerAty1.NW_011999588v1 I 3 C 0 s chlSab2.chr19 24766480 46 + 33263144 AACTGACCAC-ATCTGAATTTATGAGCAGAAGTTGAGTCCAAACAAA i chlSab2.chr19 I 3 C 0 s manLeu1.NW_012102031v1 14047328 46 - 14338769 AACTGACCAC-ATCTGAATTTATGAGCAGAAGTTGAGTCCAAACAAA i manLeu1.NW_012102031v1 I 3 C 0 s colAng1.NW_012115588v1 986445 46 + 1946073 AACTGACCAC-AGCTGAATTTATGAGCAGAAGTTGAGTCCAAACAAA i colAng1.NW_012115588v1 I 3 C 0 s calJac3.chrUn_GL286373 2012974 46 - 2117846 AACTGACCAC-ATCTGAATTTATGAGCAGAAGTTGAGTCCAAACAAA i calJac3.chrUn_GL286373 I 3 C 0 s saiBol1.JH378157 8924443 46 - 16357246 AACTGACCAC-ATCTGAATTTATGAGCAGAAGTTGAGTCCAAACAAA i saiBol1.JH378157 I 3 C 0 s cebCap1.NW_016107750v1 1408159 46 - 1807191 AACTGACCAC-ATCTGAATTTATGAGCAGAAGTTGAGTCCAAACAAA i cebCap1.NW_016107750v1 I 3 C 0 s aotNan1.NW_018512389v1 39045 46 - 704494 AACTGACCAC-ATCTGAATTTATGAGCAGAAGTTGAGTCCAAACAAA i aotNan1.NW_018512389v1 I 3 C 0 s micMur3.chr7 5780890 43 + 108171978 AACTGACCAC-ATTTGAATTTATGAG---AAGTTGAATCAAAACAAA i micMur3.chr7 I 7 I 1 s otoGar3.GL873526 36347289 46 - 42659167 AACTGACCAT-ATCCGAATTTATGAGTAAAAGTTGAATCAAAACAAA i otoGar3.GL873526 I 7 I 43 s mm10.chr15 82874209 42 + 104043685 AACACTATAC-ATCTGAATTTATGGT---GAGGTAAACCCAAACAA- i mm10.chr15 I 2 C 0 s canFam3.chr10 46155752 46 - 69331447 AACTGACCAC-ATCTGAAATTATGAATAGTAGCTGAGTCCAAACAAA i canFam3.chr10 I 9 I 1 s dasNov3.JH570235 137524 47 + 1056298 AACTGACCACAATTTGCACTTATAAGCAGACATTGAGTTGAAACAAA i dasNov3.JH570235 I 217 I 1 e proCoq1.NW_012136747v1 5141473 192 - 6317780 I a score=4011142.000000 s hg38.chr22_GL383582v2_alt 144406 229 + 162811 AACACACTGT-AAAACAAAAGTGCTG-GC-TAACAACCTTAGAAAGAAAATATAGGAGGGGACAAACAGATTTTAATGTGTCCTTGGCCTTCCTGAGCAAAGCAATGAGAAATGCAGTCAACCAAAGCATTTAGACTTG-ATTTTACTGGACGTACCAACACCATAG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTTTAGTCCCCTCCAGATAAAA s panTro5.chr22 28923962 229 + 37823149 AACACACTTC-AAAACAAAAGTGCTG-GC-TAACAACCTTAGAAAGAAAATATAGGAGGGAACAAACAGATTTTAATGTGTCCTTGGCCTTCCTGAGCAAAGCAATGAGAAATGCAGTCAACCAAAGCATTTAGACTTG-ATTTTACTGGAGGTACCAACACCATAG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTTTAGTCCCCTCCAGATAAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198526 229 + 50109623 AACACACTGC-AAAACAAAAGTGCTG-GC-TAACAACCTTAGAAAGAAAATATAGGAGGGGACAAACAGATTTTAATGTGTCTTTGGCCTTCCTGAGCAAAGCAATGAGAAATGCAGTCAACCAAAGCATTTAGACTTG-ATTTTACTGGAGGTACCAACACCATAG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTTTAGTCCCCTCCAGATAAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221726 229 + 4464012 AACACACTGT-AAAACAAAAGTGCTG-GC-TAACAACCTTAGAAAGAAAATATAGGAGGGGACAAACAGATTTTAATGTGTCCTTGGCCTTCCTGAGCAAAGCAATGAGAAATGCAGTCAACCAAAGCATTTAGACTTG-ATTTTACTGGAGGTACCAACACCATAG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTTTAGTCCCCTCCAGACAAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106714537 229 - 115148730 AACACACTGT-AAAACAAAAGTGCTG-GC-TAACAACCTTAGAAAGAAAGTATACGAGGGGACAAACAGGTCTTAATGCGTCCTTGGCCTTCCTGAGCAAAGCAATGAGAAATACAGTCAACCAAAGCATTTAGTCTTG-ATTTTACTGGAGGTACCAACACCATTG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTTTAGTCCCCTCCAGATAAAA i nomLeu3.chr7b C 0 I 309 s rheMac8.chr10 84333573 226 + 92844088 AACACACTGT-AAAACAAAAGTGCTG-GC-TAACAACCTTAGAAAGGA---AAAGGAGGGGACACACAGATTTCAACGCGTCCTTGGCCTTCCTGAGCAAAACAATGAGAAATGCAGTCAACCAAAGCATTTAGACTTG-ATTTTACTGGAGATACCAACACCATAG------GTCAACCTGTCAAATGAAGCAAAAAGCAAAACCGAGTTCTATGGGTTTAGTCCCCTACAGATAAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87679939 226 - 96509753 AACACACTGT-AAAACAAAAGTGCTG-GC-TAACAACCTTAGAAAGGA---AAAGGAGGGGACACACAGATTTCAACGCGTCCTTGGCCTTCCTGAGCAAAACAATGAGAAATGCAGTCAACCAAAGCATTTAGACTTG-ATTTTACTGGAGATACCAACACCATAG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTTTAGTCCCCTACAGATAAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177051 229 - 13098629 AACACACTGT-AAAACAAAAGTGCTG-GC-TAACAACCTTAGAAAGGAAATAAAGGAGGGGACACACAGATTTCAACGCGTCCTTGGCCTTCCTGAGCAAAACAATGAGAAATGCAGTCAACCAAAGCATTTAGACTTG-ATTTTACTGGAGATACCAACACCATAG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTTTAGTCCCCTACAGATAAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136441 229 - 4483953 AACACACTGT-AAAACAAAAGTGCTG-AC-TAACAACCTTAGAAAGGAAATATAGGAGGGGACAAACAGATTTTAACGCGTCCTTGGCCTTCCTGAGCAAAACAATGAGAAATGCAGTCAACCAAAGCATTTAGACTTG-ATTTTACTGGAGATACCAACACCATAG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTTTAGTCCCCTACAGATAAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24766526 229 + 33263144 AACACACTGT-AAAACAAAAGTGCTG-GC-TAACAACCTTAGAAAGGAAATATAGGAGGGGACAAACAGATTTTAACGCGTCCTTGGCCTTCCTGAGCAAAACAATGAGAAATGCAGTCAACCAAAGCATTTAGACTTG-ATTTTACTGGAGATACCAACACCATAG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTTTAGTCCCCTACAGATAAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047374 229 - 14338769 AACACACTGT-AAAACAAAAGTGTTG-GC-TAACAACCTTAGAAAGGAAATATAGGAGGGGACAAACAGATTTTAACGCGTCCTTGGCCTTCCTGAGCAAAACAATGAGAAATGCAGTCAACCAAAGCATTTAGACTTG-ATTTTACTGGAGATACCAACACCATAG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTTTAGTCCCCTACAGATAAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986491 229 + 1946073 AACACACTGT-AAAACAAAAGTGCTG-GC-TAACAACCTTAGAAAGGAAATACAGGAGGGGACAAACAGATTTTAACACGTCCTTGGCCTTCCTGATCAAAACAATGAGAAATGCAGTCAACCAAAGCATTTAGACTTG-ATTTTACTGGAGATACCAACACCATAG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTTTAGTCCCCTACAAATAAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013020 229 - 2117846 AACACACTGT-AAAACAAAAGTGCTG-GC-TAACAACCTTAGAAAGGAAATATAGGATAGGACAAACAGATTTTAATGCGTCCTTGGCCTTCCTGAGCAAAGCAAGGAGAAATGCAGTCAACCAAAGTACTTAGACTTG-GTTTTACTGGAGGTATCAACACCCTAG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTATAGTCCCCTCCAGATAAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924489 229 - 16357246 AACACACTGT-AAAATAGAAGTGCTG-GC-TAACAACCTTAGAAAGGAAATATAGGATGGGACAAACAGATTTTAATGCGTCCTTGGCCTTCCTGAGCAAAGCAATGAGAAATGCAGTCAACCAAAGCACTTAGACTTG-GTTTTACTGGAAGTATCAACACCATAG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTACAGTCCCCTCCAGATAAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408205 229 - 1807191 AACACACCGT-AAAACAAAAGTGCTG-GC-TAACAACCTTTGAAAGGAAATATAGGATGGGACAAACAGATTTTAATGCGTCCTTGGCCTTCCTGAGCAAAGCAATGAGAAATGCAGTCAACCAAAGCACTTAGACTTG-GTTTTACTGGAGGTATCAACACCATAG------GTCAACCTGTCAACTGAAGCAAAAAGCAGAACCGAGTTCTATGGGTATAGTCCTCTCCAGATAAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39091 225 - 704494 AACACACTGT-AAAACAAAAGT-----GC-TAACAACCTTAGAAAGGAAATATAGGATGGGACAAACAGACTTTAATGCGTCCTTGGCCTTCCTGAGCAAAGCAATGAGAAATGCAGTCAACCAAAGCACTTAGACTTG-GTTTTACTGGAGGTATCAACACCATAG------GTCAACCTGTCAAATGAAGCAAAAAGCAGAACCGAGTTCTATGGGTATAGACCCCTCCAGATAAAA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5780934 228 + 108171978 AACATACTAT-AAAACAAAAGTGCAG-GC--AACAACCTTAAAAAGGAAATACATGATGGGACAAACACATTTTAATGCGTCCTTGGCCTTCTTGGGCAAAGCAATGAGAAAAGCAGTCAACCAAAGCATTTAGACTTG-ATTTTATTGGAAGTACCAACATCATAG------GTCAACCTGTCAAATGAAGCAAAAGGCAGAACTGAGTTCTATGGGTACAGTCCACTTCAGATAAAA i micMur3.chr7 I 1 C 0 s proCoq1.NW_012136747v1 5141665 228 - 6317780 AACATACTGT-GAAACAAAAGTTCAG-GC--AACAACCTTAAAAAGGAAATACAGGATGGGACAAACACATTTTAATGCGTCCTTGGCCTTCTTGGGCAAAGCAATGAGAAAAGCAGTCAACCAAAGCATTTAGACTTG-ATTTTATTGGAAGTACCAACATCATAG------GTCAACCTGTCAAATGAAGCAAAAGGCAGAACTGAGTTCTATGGGTACAGTCCACTTCAGATAAAA i proCoq1.NW_012136747v1 I 192 C 0 s otoGar3.GL873526 36347378 222 - 42659167 AACACACTAT-AAAACAAAACTGCTG-GC-TAACAACCTTAAAAAGGAAATATAGGATGGGACAAACAGATTTTAATGCATCCTTGGCCTTCTTGGGCAAAGCAATGAGAAATGAAGTCAACCAAAGCATTTGGACTTG-ATTTTACTGGAAGTACCAACATGATAG------GTCAACCTGTCAAATGAAGCAAAAGGTAGAA-------CTATGGGTAGAGCCCACTCCAGATAAAA i otoGar3.GL873526 I 43 C 0 s mm10.chr15 82874251 235 + 104043685 --CACACTGTAAAAACAACAGTGCCA-GC-TGACAATTTCAGAAAAGAAATGTAAGATAGGACAAATAGACTTTAATGTGTCTCTGGCCTTTCTGAACAAACCAATGAGAAAAATAGTCAATCAAAGCATGCCTACTTGTATTTTATTGAAAGTGCCAAAGTCATAGCTCATAGTAATAATATCAAATGAAACAAACAACAGAACTAAGTTCTTGGAGTCTAGTCCACTCCAGATAAAA i mm10.chr15 C 0 C 0 s canFam3.chr10 46155799 225 - 69331447 AACACATAAT--AGACAAAAGTACTACTC-CAACAATCTTAGAAAGTAAATACAGGATGGGAC----AGATTTTAATGTGTCCTTGGCCTGCTTGGGCAAAGCAATGAGAAATGCACTCAACCAGAGCATTAAGACTTG-ATTTTACTTGAGGTACCAACACCATAG------GTCAACCTATCAAATGAAGCAAAAGGCTGGATTGAGTTCTATGGGTACAGTCGACTCCAGATAAAA i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 137572 225 + 1056298 ACCACACTGT-AAAATGAAAGCACTG-ACCCAACAACTTTAAAAAAGAA--ATAGGGTGGGACACACAGATTTTAACATGTCCTTGGCCT---TGGCCAAAGCAGTGAGAAATGCAGTAACCAAACCCATTTAGATCTG-ATTTTATGGGAAGTACCAACACCATAG------GTCAACCTGTCAAATGAAGTGGAAGGCTGAACTGAGTTCTACAGGTAGAGTCCACTACAGATAAAA i dasNov3.JH570235 I 1 C 0 a score=3000834.000000 s hg38.chr22_GL383582v2_alt 144635 182 + 162811 GCCAATGAACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAA-TA----------TTGTCTGGACGATTAATTCCTGTGAAATGAACACAGGAGTTAGGAGGAGCGGAGG-TGAGTCAACACACTCTAC-ACTTC-C--ACGGTTGCCTCAAACTCACCACAATTCCAAAATA--------- s panTro5.chr22 28924191 182 + 37823149 GCCAATGAACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAA-TA----------TTGTCTGGACCATTAATTCCTGTGAAATGAACACAGGAGTTAGGAGGAGCGGAGG-TGAGTCAACACACTCTAC-ACTTC-C--ACGGTTGCCTCAAACTCACCACAATTCCAAAATA--------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198755 182 + 50109623 GCCAATGAACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAA-TA----------TTGTCTGGACCATTAATTCCTGTGAAATGAACACAGGAGTTAGGAGGAGCGGAGG-TGAGTCAACACACTCTAC-ACTTC-C--ACAGTTGCCTCAAACTCACCACAATTCCAAAATA--------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3221955 182 + 4464012 GCCAATGGACCTCTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAA-TA----------TTGTCTGGACGATTAATTCCTGTGAAATGAACACAGGAGTTAGGAGGAGCGGAGG-TGAGTCAACACACTCTAC-ACTTC-C--ACGGTTGCCTCAAACTCACCACAATTCCAAAATA--------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715075 182 - 115148730 GCCAGTGGACCTTTTTACAGTTTATGGGGTCTTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAA-TA----------TTGTCTGGACGATTAATTCCTGTGAAATGAACACAGGAGTTAGGAGGAGCGGAGG-TGAGTCAACACACTCTAC-ACTTC-C--GCTGTTGCCTCACACTCACCACAATTCCAAAATA--------- i nomLeu3.chr7b I 309 C 0 s rheMac8.chr10 84333799 182 + 92844088 GCCAATGGACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAA-TA----------TTGTCTGGACGATTAACTCCTGTGAAATGAACATAGGAGTTAGGAGGAGCAGAGG-TGAGTCAACACACTCTAC-ACTTC-C--ACGGTTGCCTCAAACTCATCACAATTCCAAAATA--------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680165 182 - 96509753 GCCAATGGACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAA-TA----------TTGTCTGGACGATTAACTCCTGTGAAATGAACATAGGAGTTAGGAGGAGCAGAGG-TGAGTCAACACACTCTAC-ACTTC-C--ACGGTTGCCTCAAACTCATCACAATTCCAAAATA--------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177280 182 - 13098629 GCCAATGGACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAA-TA----------TTGTCTGGACGATTAACTCCTGTGAAATGAACATAGGAGTTAGGAGGAGCAGAGG-TGAGTCAACACACTCTAC-ACTTC-C--ACGGTTGCCTCAAACTCATCACAATTCCAAAATA--------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136670 183 - 4483953 GCCAATGGACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGATTGCAGGCATGGGAGGAA-TA----------TTGTCTGGACGATTAACTCCTGTGAAATGAACATAGGAGTTAGGAGGAGCAGAGG-TGAGTCAACACACTCTAC-ACTTC-C--ACGGTTGCCTCCAACTCATCACAATTCCAAAATA--------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24766755 182 + 33263144 GCCAATGGACCTTTTTACAGTTTATGGAGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAA-TA----------TTGTCTGGATGATTAACTCCTGTGAAATGAACATAGGAGTTAGGAGGAGCAGAGG-TGAGTCAACACACTCTAC-ACTTC-C--ACGGTTGCCTCAAACTCACCACAATTCCAAAATA--------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047603 183 - 14338769 GCCAATGGACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGATTGCAGGCATGGGAGGAA-TA----------TTGTCTGGACGATTAACTCCTGTGAAATGAACATAGGAGTTAGGAGGAGCAGAGG-TGAGTCAACACACTCTAC-ACTTC-C--ACGGTTGCCTCAAACTCATCACAATTCCAAAATA--------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986720 182 + 1946073 GCCAATGGACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAA-TA----------TTGTCTGGACGATTAACTCCTGTGAAATGAACACAGGAGTTAGGAGGAGCAGAGG-TGAGTCAACACACTCTAC-ACTTT-C--ACGGTTGCCTCAAACTCATCACAATTCCAAAATA--------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013249 181 - 2117846 GCCAATGGACCTTTTTACAGCTTATGGGGTCCTCTCCGCATGGCTGGGGA-TGCAGGCATGAGAGGAA-TG----------TTGTCTGGGCGATTAACTCCTGTGAAATGAGCATAGGAGTTAGGAGAAGCGGAGG-CGACTCCACACACACTGC-ACTTT-C--ATGGTTTCCTCCAACTCACCACAACTCC-AAATA--------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924718 181 - 16357246 GCCAATGGACCTTTTTACAGTTTATGGGGTCCTCCCCGTATGGCTGGGGA-TGCAGGCATGAGAGGAA-TA----------TTGTCTGGGTGATTAATTCCTGTGAAATGAGCACAGGAGTTAGTGGAAACAGAGG-TGAGTCCACACACACTGC-ACTTT-C--ATGGCTGCCTCCAACTCACCACAATTCC-AAATA--------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408434 182 - 1807191 GCCAATGGACCTTTTTACAGTTTATGGGGTCCTCTCCGTATGGCTGGGGA-TGCAGGCATGAGAGGAA-TA----------TTGACTGGGTGATTAATTCCTGTGGAATGAGCACAGGAGTTAGGAGAAGCGGAGGTTGAGTCCACACACACTGC-ACTTT-C--ACGGTTGCCTCCAACTCACCACAATTCC-AAATA--------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39316 181 - 704494 GCCAATGGACCTTTTTACAGTTTATGGGGTCCTCTCCGTATGGCTGGGGA-TGCAGGCATGAGAGGAA-TG----------CTGTCTGGGTGATTAATTCCTGTGAAATAAGCATAGGAGTTAGAAGAAGCAGAGG-TGAGTTCACACACTCTGC-TCTTT-C--ATGGTTGCCTCCAACTCACCACAATTCC-AAATA--------- i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5781162 181 + 108171978 GCCAATGGACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGAAGGAA-TA----------TTGTCTGGACGATTAAATCCTGTGAAATGAACATAAGAGTCAGGAAGATTGGAGG-TGAGTTG--ACACT-TAC-AATGT-CCACTTGTTGCCTCAAACTCACCACAATTCCAAAATA--------- i micMur3.chr7 C 0 I 42 s proCoq1.NW_012136747v1 5141893 181 - 6317780 GCCAATGGACCTTTTTACAGTTTAT-GGGTCCTCTCCGTATGGCTGGGGA-TGCAGGCATGGGAGGAA-TA----------TTGTCTGGACGATTACATCCTGTGAAATGAACATAGGAGTTAGGAAGATTGGAGG-TGAGTTG--ACACTCTAC-AATGT-CCACTTGTTGCCTCCAACTCACCACAATTCCAAAATA--------- i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36347600 171 - 42659167 GCCAATGGACCTTTTTACAATTTATGGGGTCCTCTCTGTATGGCTGAGGA-TGCAGGCATGAGACGAA-TA----------TTGTCTGGACGATTAATTCCTGTGAAATGAACACAGGAGCTAGGAAGAGCAGAGG-TGAGGTG--ACACTCTAC-TAC------TTTGTTGCCTCAAACTTACTACAATTCC--------------- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82874486 182 + 104043685 GCCAATGAACCTTTTTACAGTTTA-------CTCTCCATATAGCTGAGAA-TGGAAGCATGGGGGGGG-GGGGGGGTACACCTATATGGATGATTAAGTCCTGTAAAACAAAGATAGAAGCTGAGAAAAGTAGAGG-TGAGTAG--ATGGTTGCA-AATTC-C--ACTGTTGCCACAAAGCCGCCACAACTCCAAAAC---------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46156024 169 - 69331447 GCCAATGGACCTTTTTACAG-TTATGGGGTCCTCTCCGTATGGCTGGGGA-TGCAGGCATGGGAGGAA-TA----------TTGTCTGGATGATTAATTCCTGTGGAA-GAGCACAAGAG------------GAGC-TGAGCTGACACACTCCAC-AATTTGC--ACTGTTGCCTCAAATTTACCACAACTCCAAAATC--------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 137797 193 + 1056298 GTCAATGGACCTTTTTACAGTTTATGGGGTCCTCTCCTTATGGCTGGGGA-TGCAGGCATGGGAGGAATTA----------TTGTCTGGATGATTAATTCCTGTGAAGTGAGCATAGGAGGCAGAAGGAACAGAAG-CGAGTTAAGACATTCTACAACTTT-C--ATGGCTGCCTCAAATTTACCACAGTCTCCAAACTGAATACTTA i dasNov3.JH570235 C 0 C 0 a score=17100.000000 s hg38.chr22_GL383582v2_alt 144817 1 + 162811 C s panTro5.chr22 28924373 1 + 37823149 C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198937 1 + 50109623 C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222137 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715257 1 - 115148730 C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84333981 1 + 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680347 1 - 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177462 1 - 13098629 C i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136853 1 - 4483953 C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24766937 1 + 33263144 C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047786 1 - 14338769 C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986902 1 + 1946073 C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013430 1 - 2117846 C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924899 1 - 16357246 C i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408616 1 - 1807191 C i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39497 1 - 704494 C i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5142074 1 - 6317780 C i proCoq1.NW_012136747v1 C 0 I 38 s canFam3.chr10 46156193 1 - 69331447 C i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 137990 1 + 1056298 C i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82874668 0 + 104043685 C e otoGar3.GL873526 36347771 0 - 42659167 C e micMur3.chr7 5781343 42 + 108171978 I a score=313229.000000 s hg38.chr22_GL383582v2_alt 144818 33 + 162811 CAAGAAACAATGTGCTAGTTCTTGC-TTTTTTT--A s panTro5.chr22 28924374 33 + 37823149 CAAGAAACAATGTGCTAGTTCTTGC-TTTTTTT--A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198938 33 + 50109623 CAAGAAACAATGTGCTAGTTCTTGC-TTTTTTT--A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222138 33 + 4464012 CAAGAAACAATGTGCTAGTTCTTGC-TTTTTTT--A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715258 34 - 115148730 CAAGAAATAATGTGCTAGTTCTTGCTTTTTTTT--A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84333982 33 + 92844088 CAAGAAATGATGTGCTAGTTCTTGC-TTTTTTT--A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680348 33 - 96509753 CAAGAAATGATGTGCTAGTTCTTGC-TTTTTTT--A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177463 33 - 13098629 CAAGAAATGATGTGCTAGTTCTTGC-TTTTTTT--A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136854 33 - 4483953 CAAGAAATGATGTGCTAATTCTTGC-TTTTTTT--A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24766938 33 + 33263144 CAAGAAATGATGTGCTAGTTCTTGC-TTTTTTT--T i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047787 33 - 14338769 CAAGAAATGATGTGCTAGTTCTTGC-TTTTTTT--A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986903 33 + 1946073 CAAGAAATGATGTGCTAGTTCTTGC-TTTTTTT--A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013431 32 - 2117846 CAAGAAACAATGTACTAGTACTTG--GTTTTTT--A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924900 32 - 16357246 TAAGAAACAATGTACTAGTACTTG--GTTTTTT--A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408617 32 - 1807191 CAAGAAACAATGTACTAGTACTTG--GTTTTTT--A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39498 32 - 704494 AAAGAAACACTGTACTAGTACTTG--GTTTTTT--A i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347771 30 - 42659167 ----AAACAACATACTGGTTCTAG--TTCTTTTGAA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82874668 28 + 104043685 -----AATATATTATTAGCTCTCGC-CTATTTT--A i mm10.chr15 C 0 I 436 s canFam3.chr10 46156194 25 - 69331447 TGAGAAACA--GTGTTAGTTCTTGT-CA-------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 137991 33 + 1056298 TGACAAGCAGTGTGTTACTTCTAGT-TCTTGTT--A i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5142075 38 - 6317780 I e micMur3.chr7 5781343 42 + 108171978 I a score=56160.000000 s hg38.chr22_GL383582v2_alt 144851 7 + 162811 AGTGTCC-- s panTro5.chr22 28924407 7 + 37823149 AGTGTCC-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198971 7 + 50109623 AGTGTCC-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222171 7 + 4464012 AGTGTCC-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715292 7 - 115148730 AGTGTCC-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334015 7 + 92844088 AATGTCA-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680381 7 - 96509753 AATGTCA-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177496 7 - 13098629 AATGTCA-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136887 7 - 4483953 AATGTCA-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24766971 7 + 33263144 AATGTCA-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047820 7 - 14338769 AATGTCA-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986936 7 + 1946073 AATGTCC-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013463 7 - 2117846 AATTTCC-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924932 7 - 16357246 AATGTCC-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408649 7 - 1807191 AATGTCC-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39530 7 - 704494 AATGTCC-- i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347801 7 - 42659167 AACATCT-- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46156219 7 - 69331447 AATGCAT-- i canFam3.chr10 C 0 I 2 s dasNov3.JH570235 138024 9 + 1056298 AATGCATCG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82874696 436 + 104043685 I e proCoq1.NW_012136747v1 5142075 38 - 6317780 I e micMur3.chr7 5781343 42 + 108171978 I a score=561803.000000 s hg38.chr22_GL383582v2_alt 144858 41 + 162811 ATAAGCTAAAAG-TCCTTCTGAAG---AT---TGAGCGTCCCACTTAA s panTro5.chr22 28924414 41 + 37823149 ATAATCTAAAAG-TCCTTCTGAAG---AT---TGAGCGTCCCACTTAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41198978 41 + 50109623 ATAAGCTAAAAG-TCCTTCTGAAG---AT---TGAGCGTCCCACTTAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222178 41 + 4464012 ATAAGCTAAAAG-TCCTTCTGAAG---AT---TGAGCGTCCCACTTAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715299 41 - 115148730 ATAAGCTAAAAG-TCCTTCTGAAG---AT---TGAGCGTCCCACTTAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334022 40 + 92844088 ATAAGCT-AAAG-TCCTTCTGAAG---AC---TGAGCTTCTCACTTAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680388 40 - 96509753 ATAAGCT-AAAG-TCCTTCTGAAG---AC---TGAGCTTCTCACTTAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177503 40 - 13098629 ATAAGCT-AAAG-TCCTTCTGAAG---AC---TGAGCTTCTCACTTAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136894 40 - 4483953 ATAAGCT-AAAG-TCCTTCTGAAG---AC---TGAGCTTCTCACTTAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24766978 40 + 33263144 ATAAGCT-AAAG-TCCTTCTGAAG---AC---TGAGCTTCTCACTTAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047827 40 - 14338769 ATAAGCT-AAAG-TCCTTCTGAAG---AC---TGAGCTTCTCACTTAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986943 41 + 1946073 ATAAGCTAAAAG-TCCTTCTGAAG---AT---TGAGCTTCTCACTTAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013470 41 - 2117846 GTAAGCTAAACG-TCCTTCTGAAG---AT---TTAGCTTCCCACTTAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924939 41 - 16357246 ATAAGCTAAACA-TCCTTCTGAAG---AT---TGAGGTTCCCACTTAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408656 41 - 1807191 ATAAGCTAAACA-TCCTTCTGAAG---AT---TGAGCTTCCCACTTAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39537 41 - 704494 ATAAGCTAAACG-TCCTTCTGAAG---AT---TTAGCTTCCCACTTAA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5781385 41 + 108171978 ATAAGCTAAATG-TCCTTCTAAAG---AC---TGAGCTTCCCACTTAA i micMur3.chr7 I 42 C 0 s proCoq1.NW_012136747v1 5142113 41 - 6317780 ATAAGCTAAACA-TCCTTCTAAAG---AT---TGAGCTTCCCACATAA i proCoq1.NW_012136747v1 I 38 C 0 s otoGar3.GL873526 36347808 41 - 42659167 ATAAGCTAAATG-TCCTTCTAAAA---AC---TGAGCTTCTCggctcg i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46156228 39 - 69331447 ACAAGTA------TCCTTCTAAAG---ATTACTGAGCTTCCCACTTAA i canFam3.chr10 I 2 C 0 s dasNov3.JH570235 138033 45 + 1056298 AGAATTTAAGCGTTCCTTCTTAAGGTTAC---TGAGTTTACTACTTAA i dasNov3.JH570235 C 0 I 10 e mm10.chr15 82874696 436 + 104043685 I a score=4602.000000 s hg38.chr22_GL383582v2_alt 144899 2 + 162811 AA- s panTro5.chr22 28924455 2 + 37823149 AA- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199019 2 + 50109623 AA- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222219 2 + 4464012 AA- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715340 2 - 115148730 AA- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334062 2 + 92844088 CA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680428 2 - 96509753 CA- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177543 2 - 13098629 CA- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136934 2 - 4483953 CA- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767018 2 + 33263144 CA- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047867 2 - 14338769 CA- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986984 2 + 1946073 CA- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013511 2 - 2117846 AA- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924980 2 - 16357246 AA- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408697 2 - 1807191 AA- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39578 2 - 704494 AA- i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5781426 2 + 108171978 aa- i micMur3.chr7 C 0 I 86 s proCoq1.NW_012136747v1 5142154 2 - 6317780 AA- i proCoq1.NW_012136747v1 C 0 I 86 s otoGar3.GL873526 36347849 2 - 42659167 gc- i otoGar3.GL873526 C 0 I 7 s mm10.chr15 82875132 2 + 104043685 AA- i mm10.chr15 I 436 C 0 s canFam3.chr10 46156267 2 - 69331447 AA- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 138088 2 + 1056298 -AC i dasNov3.JH570235 I 10 C 0 a score=21165.000000 s hg38.chr22_GL383582v2_alt 144901 2 + 162811 GC s panTro5.chr22 28924457 2 + 37823149 GC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199021 2 + 50109623 GC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222221 2 + 4464012 GC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715342 2 - 115148730 GC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334064 2 + 92844088 GT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680430 2 - 96509753 GT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177545 2 - 13098629 GT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136936 2 - 4483953 GT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767020 2 + 33263144 GT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047869 2 - 14338769 GT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986986 2 + 1946073 GC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013513 2 - 2117846 GC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924982 2 - 16357246 GC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408699 2 - 1807191 GC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39580 2 - 704494 GC i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347858 2 - 42659167 gc i otoGar3.GL873526 I 7 C 0 s mm10.chr15 82875134 2 + 104043685 GT i mm10.chr15 C 0 C 0 s canFam3.chr10 46156269 2 - 69331447 AC i canFam3.chr10 C 0 I 197 s dasNov3.JH570235 138090 2 + 1056298 AC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5142156 86 - 6317780 I e micMur3.chr7 5781428 86 + 108171978 I a score=599043.000000 s hg38.chr22_GL383582v2_alt 144903 58 + 162811 CCAAACCAAAA----------------------AATAGTTTGCAGGATTATTTCAAATATATTAAAAACATCAAAATGCT-- s panTro5.chr22 28924459 58 + 37823149 CCAAACCAAAA----------------------AATAGTTTGCAGGATTATTTCAAATATATTAAAAACATCAAAATGCT-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199023 58 + 50109623 CCAAACCAAAA----------------------AATAGTTTGCAGGATTATTTCAAATATATTAAAAACATCAAAATGCT-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222223 58 + 4464012 CCAAACCAAAA----------------------AATAGTTTGCAGGATTATTTCAAATATATTAAAAACATCAAAATGCT-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715344 58 - 115148730 CCAAACCAAAA----------------------AATAGTTTGCAGGATTATTTCAAATATATTGAAAACATCAAAATGCT-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334066 58 + 92844088 CCAAACGAATA----------------------AATACTTTGCAGGATTATTTCAAATATATTACAAACATCAAAATGCT-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680432 58 - 96509753 CCAAACGAATA----------------------AATACTTTGCAGGATTATTTCAAATATATTACAAACATCAAAATGCT-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177547 58 - 13098629 CCAAACGAATA----------------------AATACTTTGCAGGATTATTTCAAATATATTACAAACATCAAAATGCT-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136938 58 - 4483953 CCAAACGAATA----------------------AATACTTTGCAGGATTATTTCAAATATATTACAAACATCAAAATGCT-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767022 58 + 33263144 CCAAACGAATA----------------------AATACTTTGCAGGATTATTTCAAATATATTACAAACATCAAAATGCT-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047871 58 - 14338769 CCAAACGAATA----------------------AATACTTTGCAGAATTATTTCAAATATATTACAAACATCAAAATGCT-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 986988 58 + 1946073 CCAAACCAATA----------------------AATACTTTGCAGGATTATTTCAAATATATTACAAACATCAAAATGCT-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013515 58 - 2117846 CCAAACCAATA----------------------TATACTTTGAAGAATTATTTCAAATATATTACAAACATCAAAATGCT-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8924984 58 - 16357246 TGAAACCAATA----------------------TATACTTTGAAGGATTATTTCAAATATATTACAAACATCAAAATGCT-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408701 58 - 1807191 CCAAACCAATA----------------------TATACTTAGAAGGATTATTTCAAATATATTACAAACATCAAAATGCT-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39582 58 - 704494 CCAAACCAATA----------------------CATACTTTGAAGGATTATTTCAAATATATTACAAACATCAAAATGCT-- i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347860 18 - 42659167 tcaagcg--------------------------------------------------------------gctaaggcgcc-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82875136 57 + 104043685 CTACACCTAGA----------------------ACTAGTTCAAAGAATTATTAAAAACATATCAGAAATACAAAACTCC--- i mm10.chr15 C 0 C 0 s canFam3.chr10 46156468 58 - 69331447 CCACACCTATA----------------------AATAGCTCAGAGGATTGTTTCAAACACTCTACAAACTTCAAAACTCC-- i canFam3.chr10 I 197 C 0 s dasNov3.JH570235 138092 82 + 1056298 CCACACCCAAAAATCAGAGAAGTCCATACCTGTAATAGGTCAAAGGACTGTTTCAATAATGTTTTGAATTTCAGAACTCAAA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5142156 86 - 6317780 I e micMur3.chr7 5781428 86 + 108171978 I a score=401314.000000 s hg38.chr22_GL383582v2_alt 144961 34 + 162811 AACT-CCAAACTAAGGTGAAATAG---TTACAT----CTAAG s panTro5.chr22 28924517 34 + 37823149 AACT-CCAAACTAAGGTGAAATAG---TTACAT----CTAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199081 34 + 50109623 AACT-CCAAACTAAGGTGAAATAG---TTACAT----CTAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222281 34 + 4464012 AACT-CCAAACTAAGGTGAAATAG---TTACAT----CTAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715402 34 - 115148730 AACT-CCAAACTAAGGTGAAATAG---TTACAT----CTCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334124 37 + 92844088 AACT-CCAAACTAAGATGAAATAGTTATTACCT----TTAAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680490 37 - 96509753 AACT-CCAAACTAAGATGAAATAGTTATTACCT----TTAAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177605 37 - 13098629 AACT-CCAAACTAAGATGAAATAGTTATTACCT----TTAAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4136996 37 - 4483953 AACT-CCAAACTAAGATGAAATAGTTATTACCT----TTAAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767080 37 + 33263144 AACT-CCAAACTAAGATGAAATAGTTATTACCT----TTAAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047929 37 - 14338769 AACT-CCAAACTAAGATGAAACAGTTATTACCT----TTAAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987046 37 + 1946073 AACT-CCAAACTAAGATGAAATAGTTATTACCT----TTAAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013573 34 - 2117846 AACT-CCAAACTAAGGCAAAATAA---TTACCT----CTAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925042 34 - 16357246 AACT-CCAAACTAAGGCAAAATAA---TTACCT----CTAAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408759 34 - 1807191 AACA-CCAAACTAAGGCAAAATAA---TTACCT----CTAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39640 34 - 704494 AACT-CCAAACTAAGGCAAAATAA---TTACCT----CTAAG i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5781514 34 + 108171978 AACT-CTAAACTAAGAAGAAATAG---TCACCT----CTAAG i micMur3.chr7 I 86 C 0 s proCoq1.NW_012136747v1 5142242 34 - 6317780 AACT-CCAAACTAAGGAGAAATAG---TCACCT----CTACG i proCoq1.NW_012136747v1 I 86 C 0 s otoGar3.GL873526 36347878 17 - 42659167 ----------------------ag---ccacatacacctaag i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82875193 34 + 104043685 AACT-TCAAATTAAGAAGAAGAAA---TCGTCT----CTTTG i mm10.chr15 C 0 I 3 s canFam3.chr10 46156526 37 - 69331447 AACTCCCAAACTAAACTAGACTTA-GAACATCT----CTAAG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 138174 34 + 1056298 AACT-CCAAACTAAAGAGAAATGG---TTACCT----GTAAG i dasNov3.JH570235 C 0 C 0 a score=525727.000000 s hg38.chr22_GL383582v2_alt 144995 33 + 162811 TATCC-AAGAAGAGCATCAAG-AATTAGCAAATTA s panTro5.chr22 28924551 33 + 37823149 TATCC-AAGAAGAGCATCAAG-AATTAGCAAATTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199115 33 + 50109623 TATCC-AAGAAGAGCATCAAG-AATTAGCAAATTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222315 33 + 4464012 TATCC-AAGAAGAGCATCAAG-AATTAGCAAATTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715436 33 - 115148730 TATCC-AAGAAGAGCATCAAG-AATTAGCAAATTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334161 33 + 92844088 TATTC-AAGAAGAGCATTAAG-AATTAGCAAATTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680527 33 - 96509753 TATTC-AAGAAGAGCATTAAG-AATTAGCAAATTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177642 33 - 13098629 TATTC-AAGAAGAGCATTAAG-AATTAGCAAATTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137033 33 - 4483953 TATTC-AAGAAGAGCATTAAG-AATTAGCAAATTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767117 33 + 33263144 TATTC-AAGAAAAGCATTAAG-AATTAGCAAATTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047966 33 - 14338769 TATTC-AAGAAGAGCATTAAG-AATTAGCAAATTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987083 33 + 1946073 TATTC-AAGAAGAGCATCAAG-AATTAGCAAATTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013607 33 - 2117846 TATCC-AAGAAGAGCATCAAG-AATTAGCAAATTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925076 31 - 16357246 TATCC-AAGAAGAGCATCA---AATTAGCAAATTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408793 33 - 1807191 TATCC-AAGAAGAGCATCAAG-AATTAGCAAATTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39674 33 - 704494 TATCC-AAGAAGAGCATCAAG-AATTAGCAAATTA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5781548 33 + 108171978 TATCC-AAGAAGAGCATCAAG-AATTTGCAAATTA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5142276 33 - 6317780 TATCC-AAGAAGAGAATCAAG-AATTAGCAAATTA i proCoq1.NW_012136747v1 C 0 C 0 s mm10.chr15 82875230 32 + 104043685 TGTTC-AAGAAGGGCACCAAC-AATTGGCAAGTT- i mm10.chr15 I 3 C 0 s canFam3.chr10 46156563 34 - 69331447 TCTCT-AGGAAGTGCTTTAAGAAATTAGCAAATTG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 138208 34 + 1056298 CATCCAAAAAAGAGCATCAAG-AATTATCAAATTA i dasNov3.JH570235 C 0 I 388 e otoGar3.GL873526 36347895 0 - 42659167 C a score=13365.000000 s hg38.chr22_GL383582v2_alt 145028 1 + 162811 A s panTro5.chr22 28924584 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199148 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222348 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715469 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334194 1 + 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680560 1 - 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177675 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137066 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767150 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14047999 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987116 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013640 1 - 2117846 A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925107 1 - 16357246 A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408826 1 - 1807191 A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39707 1 - 704494 A i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5781581 1 + 108171978 A i micMur3.chr7 C 0 I 502 s proCoq1.NW_012136747v1 5142309 1 - 6317780 A i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46156597 1 - 69331447 G i canFam3.chr10 C 0 C 0 e mm10.chr15 82875262 0 + 104043685 C e dasNov3.JH570235 138242 388 + 1056298 I e otoGar3.GL873526 36347895 0 - 42659167 C a score=147608.000000 s hg38.chr22_GL383582v2_alt 145029 13 + 162811 --TTTAGGGTCAGAA s panTro5.chr22 28924585 13 + 37823149 --TTTAGGGTCAGAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199149 13 + 50109623 --TTTAGGGTCAGAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222349 13 + 4464012 --TTTAGGGTCAGAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715470 13 - 115148730 --TTTAGGGTCAGAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334195 13 + 92844088 --TTCAGGGTCAGAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680561 13 - 96509753 --TTCAGGGTCAGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177676 13 - 13098629 --TTCAGGGTCAGAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137067 13 - 4483953 --TTCAGGGTCAGAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767151 13 + 33263144 --TTCAGGGTCAGAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14048000 13 - 14338769 --TTCAGGGTCAGAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987117 13 + 1946073 --TACAGGGTCAGAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013641 13 - 2117846 --TTCAGGGTCAGAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925108 13 - 16357246 --TTCAGGGTCAAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408827 13 - 1807191 --TTCAGGGTCAGAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39708 13 - 704494 --TTCAAGGTCAGAA i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5142310 13 - 6317780 --TTTGGAGTCAGAA i proCoq1.NW_012136747v1 C 0 I 121 s canFam3.chr10 46156598 15 - 69331447 GGTATGcagtcagtt i canFam3.chr10 C 0 C 0 e mm10.chr15 82875262 0 + 104043685 C e dasNov3.JH570235 138242 388 + 1056298 I e otoGar3.GL873526 36347895 0 - 42659167 C e micMur3.chr7 5781582 502 + 108171978 I a score=345001.000000 s hg38.chr22_GL383582v2_alt 145042 57 + 162811 AACCTAA-TAATTAGGGTCAGAAGAACA---------------------AAAAGATCATTTCGGTAGCATAAGA-----------------ACTTT s panTro5.chr22 28924598 58 + 37823149 AACCTAATTAATTAGGGTCAGAAGAACA---------------------AAAAGATCATTTCGGTAGCATAAGA-----------------ACTTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199162 58 + 50109623 AACCTAATTAATTAGGGTCAGAAGAACA---------------------AAAAGATCATTTCGGTAGCATAAGA-----------------ACTTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222362 44 + 4464012 AACCTTA--------------AAGAACA---------------------AAAAGATCATTTCGGTAGCATGAGA-----------------ACTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715483 45 - 115148730 AACCTTA-------------AAGAAACA---------------------AAAAGATTATTTCAGTAGCATAAGA-----------------ACTTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334208 45 + 92844088 AACCTTA-------------AAGAAACA---------------------AAAAGATCATTTCAGTAACATAAGA-----------------ACTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680574 45 - 96509753 AACCTTA-------------AAGAAACA---------------------AAAAGATCATTTCAGTAACATAAGA-----------------ACTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177689 45 - 13098629 AACCTTA-------------AAGAAACA---------------------AAAAGATCATTTCAGTAACATAAGA-----------------ACTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137080 45 - 4483953 AACCTTA-------------AAGAAACA---------------------AAAAGATCATTTCAGTAACATAAGA-----------------ACTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767164 45 + 33263144 AACCTTA-------------AAGAAACA---------------------AAAAGATCATTTCAGTAACATAAGA-----------------ACTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14048013 45 - 14338769 AACCTTA-------------AAGAAACA---------------------AAAAGATCATTTCAGTAACATAAGA-----------------ACTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987130 45 + 1946073 AACCTTA-------------AAGAAACA---------------------AAAAGATCATTTTAGTAGCATAAGA-----------------ACTTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013654 45 - 2117846 AACCTTA-------------AAGAAACA---------------------AAAGGATCATTTTATTAGCATAAGA-----------------ACTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925121 41 - 16357246 AACCTT-----------------AAACA---------------------AAAAGATCCTTTTAGTAGCACAGGA-----------------ACTTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408840 45 - 1807191 AACATTA-------------AAGAAACA---------------------AAAAGATCATTTTAGTAGCATAAGA-----------------ACTTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39721 45 - 704494 AACCTTA-------------AAGAAACA---------------------AAAAGATCATTTTAGTAGCATAAGA-----------------ACTTT i aotNan1.NW_018512389v1 C 0 C 0 s mm10.chr15 82875262 30 + 104043685 --------------------GGAGAGTA---------------------AAGAGATAA-TTAAGCAGCAAGA------------------------ i mm10.chr15 C 0 C 0 s canFam3.chr10 46156613 73 - 69331447 -----------------------aagcagtggactcttggtttcggctcaggtcatgatcttagggtcctgagattgaaccccaaagtcatgctct i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 138242 388 + 1056298 I e otoGar3.GL873526 36347895 0 - 42659167 C e proCoq1.NW_012136747v1 5142323 121 - 6317780 I e micMur3.chr7 5781582 502 + 108171978 I a score=186885.000000 s hg38.chr22_GL383582v2_alt 145099 18 + 162811 GTgccgggtgcagtggct s panTro5.chr22 28924656 18 + 37823149 GTgccgggtgcagtggct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199220 18 + 50109623 GTgccgggtgcagtggct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222406 18 + 4464012 GTgccgggtgcagtggct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715528 18 - 115148730 GTAccgggtgcagtggct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334253 18 + 92844088 GTgccgggtgcggtggct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680619 18 - 96509753 GTgccgggtgcggtggct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177734 18 - 13098629 GTgccgggtgcggtggct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137125 18 - 4483953 GTgccgggtgcggtggct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767209 18 + 33263144 GTgccgggtgcggtggct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14048058 18 - 14338769 GTgccgggtgcggtggct i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987175 18 + 1946073 GCgccgggtgcggtggct i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013699 18 - 2117846 GTgccaggtgtggtggct i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925162 18 - 16357246 GTgccaggtgtggtggct i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408885 18 - 1807191 GTgccaggtgtggtggct i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39766 18 - 704494 GTgccaggtgtggtggct i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347895 12 - 42659167 gtggcgggttcg------ i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82875292 4 + 104043685 -TGCT------------- i mm10.chr15 C 0 C 0 s canFam3.chr10 46156686 18 - 69331447 gtgctcagcgtggagtct i canFam3.chr10 C 0 I 112 e dasNov3.JH570235 138242 388 + 1056298 I e proCoq1.NW_012136747v1 5142323 121 - 6317780 I e micMur3.chr7 5781582 502 + 108171978 I a score=907851.000000 s hg38.chr22_GL383582v2_alt 145117 98 + 162811 cacgcctgtaaatcccagaacttttggagggcagggcaggcggatcacgaggtcaggagttcaagacaagcctggccaacatggtgaaaccccacctc s panTro5.chr22 28924674 98 + 37823149 cacgcctgtaaatcccagaacttttggagggcagggcaggcggatcacgaggtcaggagttcaagacaagcctggccaacatggtgaaaccccacctc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199238 98 + 50109623 cacgcctgtaaatcccagaacttttggagggcagggcaggtggatcacgaggtcaggagttcaagacaagcctggccaacatggtgaaaccccacctc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222424 98 + 4464012 cacgcctgtaaatcccagaacttttggagggcagggcaggcggatcacgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccacctc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715546 98 - 115148730 cacgcctgtaaatcccagaacttttggagggcagggcaggcggatcacgaggtcaggggttcaagaccagcctggccaacatggtgaaaccccacctc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334271 97 + 92844088 catgcctgt-aatcccagaacttttgtaggccagggcaggtggatcacgaggtcaggagttcaagaccagcctggccaataaggtgaaactccatctc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680637 97 - 96509753 cacgcctgt-aatcccagaacttttgtaggccagggcaggcggatcacgaggtcaggagttcaagaccagcctggccaataaggtgaaactccatctc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177752 97 - 13098629 cacgcctgt-aatcccagaacttttgtaggccagggcaggcgaatcacgaggtcaggagttcaagaccagcctggccaataaggtgaaactccatctc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137143 97 - 4483953 cacgcctgt-aatcccagaacttttgtaggccagggcaggcggatcacgaggtcaggagttcaagaccagcctggccaataaggtgaaactccatctc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767227 97 + 33263144 cacgcctgt-aatcccagaacttttgtaggccagggcaggcggatcacaaggtcaggagttcaagaccagcctggccaataaggtgaaactccatctc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14048076 97 - 14338769 cacgcctgt-aatcccagaacttttgtaggccagggcaggcggatcacgaggtcaggagttcaagaccagcctggccaataaggtgaaactccatctc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987193 97 + 1946073 cacgcctgt-aatcccagaacttttgtaggccagggcagggggatcacgaggtcaggagttcaagaccagcctggccaataaggtgaaactccatctc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013717 97 - 2117846 catgcctgt-aatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggagtttgagaccagcctggccaatatgatgaaaccccgtctc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925180 95 - 16357246 catgcctgt-aatcccagcactttgggaggctgaggtgggcagatcacgaggtcaggagtttgagaccagcctggccaatatgatgaaaccctg--tc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1408903 97 - 1807191 cttgcctgt-aatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggagtttgagaccagcctggccaatatgatgaaaccctgtctc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39784 97 - 704494 catgcctgt-aatcccagcactttgggaggctgaggagggcagatcacgaggtcaggagttcgagaccagcctggccaatatgatgaaacctggtctc i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347907 44 - 42659167 ----------aatccc----------cagcccaggcccgccaaacaacaatg-------------------atggc--------tgcaacc------- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82875296 80 + 104043685 ----------GGtcccagca-ttccagaagcagaggcaggtggatcccta-------agttggaggccagtcaggacggcacaaagaaaccctgtctc i mm10.chr15 C 0 I 428 e dasNov3.JH570235 138242 388 + 1056298 I e canFam3.chr10 46156704 112 - 69331447 I e proCoq1.NW_012136747v1 5142323 121 - 6317780 I e micMur3.chr7 5781582 502 + 108171978 I a score=271593.000000 s hg38.chr22_GL383582v2_alt 145215 33 + 162811 tactaaaaaaaatacaagaattagccaggcata s panTro5.chr22 28924772 33 + 37823149 tactaaaaaaaatacaagaattagccaggcata i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199336 33 + 50109623 tactaaaaaaaatacaagaattagccaggcata i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222522 33 + 4464012 tactaaaaaaaatacaagaattagccaggcata i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715644 33 - 115148730 tactaaaaaaaatacaagaattagccaggcata i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334368 31 + 92844088 tact--aaaaaatacaagaattagccaagcata i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680734 31 - 96509753 tact--aaaaaatacaagaattagccaagcata i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7177849 31 - 13098629 tact--aaaaaatacaagaattagccaagcata i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137240 31 - 4483953 tact--aaaaaatacaagaattagccaagcata i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767324 31 + 33263144 tact--aaaaaatacaagaattagccaagcata i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14048173 31 - 14338769 tact--aaaaaatacaagaattagccaaacata i manLeu1.NW_012102031v1 C 0 I 308 s colAng1.NW_012115588v1 987290 31 + 1946073 tact--aaaaaatacaagaattagccaagcata i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013814 31 - 2117846 tact--aaaaaacacaaaaattgtctgggcatg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925275 31 - 16357246 tatt--aagaaacacaaaaattgtctgggcatg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409000 31 - 1807191 tact--aaaaaacacaaaaattgtccgggcatg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39881 31 - 704494 tact--aaaaaacacaaaaattgtccgggcatg i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347951 18 - 42659167 ------aaaaaa---------tggccaggcgtt i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82875376 428 + 104043685 I e dasNov3.JH570235 138242 388 + 1056298 I e canFam3.chr10 46156704 112 - 69331447 I e proCoq1.NW_012136747v1 5142323 121 - 6317780 I e micMur3.chr7 5781582 502 + 108171978 I a score=65121.000000 s hg38.chr22_GL383582v2_alt 145248 6 + 162811 gtggcg s panTro5.chr22 28924805 6 + 37823149 gtggcg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199369 6 + 50109623 gtggcg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222555 6 + 4464012 gtggcg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715677 6 - 115148730 gtggtg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334399 6 + 92844088 gtggcg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87680765 6 - 96509753 gtggcg i macFas5.chr10 C 0 I 295 s macNem1.NW_012012688v1 7177880 6 - 13098629 gtggca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137271 6 - 4483953 gtggct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767355 6 + 33263144 gtggcg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14048512 6 - 14338769 gtggct i manLeu1.NW_012102031v1 I 308 C 0 s colAng1.NW_012115588v1 987321 6 + 1946073 gtggcg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013845 6 - 2117846 gtggca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925306 6 - 16357246 gtggca i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409031 6 - 1807191 gtggca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39912 6 - 704494 gtggca i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347969 6 - 42659167 gtggcg i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82875376 428 + 104043685 I e dasNov3.JH570235 138242 388 + 1056298 I e canFam3.chr10 46156704 112 - 69331447 I e proCoq1.NW_012136747v1 5142323 121 - 6317780 I e micMur3.chr7 5781582 502 + 108171978 I a score=157845.000000 s hg38.chr22_GL383582v2_alt 145254 18 + 162811 catgcctgtagtcccaca s panTro5.chr22 28924811 18 + 37823149 catgcctgtagtcccaca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199375 18 + 50109623 catgcctgtagtcccaca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222561 18 + 4464012 catgcctgtagtcccaca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715683 18 - 115148730 catgcctgtagtcccaca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334405 18 + 92844088 catgcctgtcgccccaga i rheMac8.chr10 C 0 I 295 s macFas5.chr10 87681066 18 - 96509753 catgcctgtaatcccagc i macFas5.chr10 I 295 C 0 s macNem1.NW_012012688v1 7177886 18 - 13098629 catgcctgtcgccccaga i macNem1.NW_012012688v1 C 0 I 296 s cerAty1.NW_011999588v1 4137277 18 - 4483953 catgcctgtcgccccaga i cerAty1.NW_011999588v1 C 0 I 295 s chlSab2.chr19 24767361 18 + 33263144 catgcctgtcgccccaga i chlSab2.chr19 C 0 I 298 s manLeu1.NW_012102031v1 14048518 18 - 14338769 catgcctgtaatcccagc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987327 18 + 1946073 catgcctgtcgccccaga i colAng1.NW_012115588v1 C 0 I 296 s calJac3.chrUn_GL286373 2013851 18 - 2117846 cgtgtctatagtcccagc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925312 18 - 16357246 tgcacctgtagtcccagc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409037 18 - 1807191 cacgcctgtagtcccagc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39918 18 - 704494 tgcgcctgtagtcccagc i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347975 18 - 42659167 ggcgcctgtagtcccagc i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82875376 428 + 104043685 I e dasNov3.JH570235 138242 388 + 1056298 I e canFam3.chr10 46156704 112 - 69331447 I e proCoq1.NW_012136747v1 5142323 121 - 6317780 I e micMur3.chr7 5781582 502 + 108171978 I a score=828136.000000 s hg38.chr22_GL383582v2_alt 145272 94 + 162811 tactcgggaggc-tgaggcaggagaattgcttgagcccaggagacagaagttgcagtgagccgagatcgtgccactgcactccagtctggccaac s panTro5.chr22 28924829 94 + 37823149 tactcgggaggc-tgaggcaggagaattgcttgagcccaggagacagaagttgcagtgagccgagatcctgccactgcactccagtctggccaac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199393 94 + 50109623 tactcgggaggc-tgaggcaggagaattgcttgagcccaggagacagaagttgcagtgagccgagatcgtgccactgcactccagtctggccaac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222579 94 + 4464012 tactcgggaggc-tgaggcaggagaattgcgtgagcccaggagacagaagttgcagtgagccgagatcgtgccactgcactccagtctggccaac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715701 93 - 115148730 tactcgggaggc-tgaggcaggagaattgcttgagcccgggagacagaggttgcagtgagccgagatcgtgccactgcactccagcctgg-cgac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334718 95 + 92844088 tacttgggaggcttgaggcagaagaattgctcgagtccgggagacagaggttgcagtgagttgagatcgtgccactacactccagcctggccaac i rheMac8.chr10 I 295 C 0 s macFas5.chr10 87681084 95 - 96509753 tacttgggaggcttgaggcagaagaattgctcgagtccgggagacagaggttgcagtgagttgagatcgtgccactgcactccagcctggccaac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7178200 95 - 13098629 tacttgggaggcttgaggcagaagaattgctcgagtccgggagacagaggttgcagtgagttgagatcgtgccactgcactccagcctggccaac i macNem1.NW_012012688v1 I 296 C 0 s cerAty1.NW_011999588v1 4137590 95 - 4483953 tacttgggaggcttgaggcaggagaattgctcgagtccgggagacagaggttgcagtgagttgagatcgtgccactgcactccagcctggccaac i cerAty1.NW_011999588v1 I 295 C 0 s chlSab2.chr19 24767677 94 + 33263144 tacttgggaggc-tgaggcaggagaattgcttgagtccgggagacagaggttgcagtgagtcgagatcgtgccactgcactccagcctggccaac i chlSab2.chr19 I 298 C 0 s manLeu1.NW_012102031v1 14048536 95 - 14338769 tacttgggaggcttgaggcaggagaattgctcgagtccgggagacagaggttgcagtgagttgagatcgtgccactgcactccagcctggccaac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987641 94 + 1946073 tacttgggaggc-tgaggcaggagaattgctcgagtccgggagacagaggttgcagtgagccgagatcgtgccactgcactccagcctggccaac i colAng1.NW_012115588v1 I 296 C 0 s calJac3.chrUn_GL286373 2013869 78 - 2117846 tactcgggaggc-tgaggca----------------ccgggaggcagaggttgcagtgagccaagattgtgccactgatctccagcctgggcaac i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925330 78 - 16357246 tactcgggaagc-tgaggca----------------tcgggaggcagaggttgcagtgagccaagattgtgccactcacctccagcctgggcaac i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409055 78 - 1807191 tactcgtgaggc-tgaggca----------------ttggagggcagaggttgcagtgagccaagattgtgccactgacctccagcctgggcaac i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 39936 64 - 704494 tacttgggagtc-c------------------------------cagaggttgcagtgagccaagactgtgccactgacctccagcctgggcaac i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36347993 90 - 42659167 tacttgggaggc-tgaggcaggagactcgcttgagcccaggagctggaggttgctgtgagc----gtgatgccatggcactctacccagggggat i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82875376 428 + 104043685 I e dasNov3.JH570235 138242 388 + 1056298 I e canFam3.chr10 46156704 112 - 69331447 I e proCoq1.NW_012136747v1 5142323 121 - 6317780 I e micMur3.chr7 5781582 502 + 108171978 I a score=21833.000000 s hg38.chr22_GL383582v2_alt 145366 2 + 162811 ag s panTro5.chr22 28924923 2 + 37823149 ag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199487 2 + 50109623 ag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222673 2 + 4464012 ag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715794 2 - 115148730 ag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334813 2 + 92844088 ag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681179 2 - 96509753 ag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7178295 2 - 13098629 ag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137685 2 - 4483953 ag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767771 2 + 33263144 ag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14048631 2 - 14338769 ag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987735 2 + 1946073 ag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013947 2 - 2117846 aa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925408 2 - 16357246 aa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409133 2 - 1807191 aa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 40000 2 - 704494 aa i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36348083 2 - 42659167 ag i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46156816 2 - 69331447 AG i canFam3.chr10 I 112 C 0 e mm10.chr15 82875376 428 + 104043685 I e dasNov3.JH570235 138242 388 + 1056298 I e proCoq1.NW_012136747v1 5142323 121 - 6317780 I e micMur3.chr7 5781582 502 + 108171978 I a score=114040.000000 s hg38.chr22_GL383582v2_alt 145368 12 + 162811 aatgagactctg s panTro5.chr22 28924925 12 + 37823149 aatgagactctg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199489 12 + 50109623 aatgagactcta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222675 12 + 4464012 aatgacactctg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715796 12 - 115148730 ggtgacactctg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334815 12 + 92844088 agtgagactctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681181 12 - 96509753 agtgagactctg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7178297 12 - 13098629 agtgagactctg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137687 12 - 4483953 agtgagactctg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767773 12 + 33263144 agtgagactctg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14048633 12 - 14338769 agtgagactctg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987737 12 + 1946073 agtgagactctg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013949 12 - 2117846 agtgagactcag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925410 12 - 16357246 agtgagactcag i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409135 12 - 1807191 agtgagactcag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 40002 12 - 704494 agtgagactcag i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36348085 12 - 42659167 cttgaggctctg i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82875804 12 + 104043685 aataataatata i mm10.chr15 I 428 C 0 s canFam3.chr10 46156818 12 - 69331447 GATTGGAGGATT i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 138242 388 + 1056298 I e proCoq1.NW_012136747v1 5142323 121 - 6317780 I e micMur3.chr7 5781582 502 + 108171978 I a score=28564.000000 s hg38.chr22_GL383582v2_alt 145380 14 + 162811 tctc---------------------aaaaaaaaaa s panTro5.chr22 28924937 15 + 37823149 tctc--------------------aaaaaaaaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199501 10 + 50109623 tct-------------------------acaaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222687 24 + 4464012 tctc-----------aaaaaaaaaaaaaaaaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715808 30 - 115148730 tctcaaa-----aaaaaaaaaaaaaaaaaaaaaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334827 35 + 92844088 tctcaggaaaaaaaaaaaaaaaaaaaaaaaaaaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681193 35 - 96509753 tctcaggaaaaaaaaaaaaaaaaaaaaaaaaaaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7178309 18 - 13098629 tctcagg-----------------aaaaaaaaaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137699 15 - 4483953 tctcagg--------------------aaaaaaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767785 18 + 33263144 tctcagg-----------------aaaaaaaaaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14048645 17 - 14338769 tctcagg------------------ggaaaaaaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987749 16 + 1946073 tctcgga-------------------aaaaaaaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013961 12 - 2117846 cctc-----------------------aaaaaaaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925422 16 - 16357246 cctcaaa-------------------aaaaaaaaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409147 12 - 1807191 ccta-----------------------aaaaaaaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 40014 9 - 704494 cctc--------------------------aaaaa i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36348097 14 - 42659167 tct---------------------aaaaaaaaaaa i otoGar3.GL873526 C 0 I 124 s mm10.chr15 82875816 14 + 104043685 attt---------------------aaaaaataaa i mm10.chr15 C 0 I 5 s canFam3.chr10 46156830 14 - 69331447 TTT---------------------AAGAAATAAAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 138630 14 + 1056298 ---------------------ttttaaaaaAAAAA i dasNov3.JH570235 I 388 C 0 e proCoq1.NW_012136747v1 5142323 121 - 6317780 I e micMur3.chr7 5781582 502 + 108171978 I a score=465011.000000 s hg38.chr22_GL383582v2_alt 145394 53 + 162811 -------------------------------------aaaaaaa---------------------------------------------------------------------------------------------agaaCTTTGTAAATGTCTGT-------CGCTCTAGACCTTATTTTA--------------------------GGGTGCA------------------------- s panTro5.chr22 28924952 53 + 37823149 -------------------------------------aaaaaaa---------------------------------------------------------------------------------------------agaaCTTTGTAAATGTCTGT-------CGCTCTAGACCTTATTTTA--------------------------GGGTGCA------------------------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199511 53 + 50109623 -------------------------------------aaaaaaa---------------------------------------------------------------------------------------------agaaCTCTGTAAATGTCTGT-------CGCTCTAGACCTTATTTTA--------------------------GGGTGCA------------------------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222711 53 + 4464012 -------------------------------------aaaaaaa---------------------------------------------------------------------------------------------aGAACTTTGTAAATGTCTGT-------AGCTCTAGACCTTATTTTA--------------------------GGGTGCA------------------------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715838 53 - 115148730 -------------------------------------acaaaaa---------------------------------------------------------------------------------------------aCAACTTTGTAAATGTCTGT-------AGCTCTAGACCTTATTTTA--------------------------GGGTGCA------------------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334862 53 + 92844088 -------------------------------------aaaaaaa---------------------------------------------------------------------------------------------aaaaCTTTGTAAATGTCTGT-------AGCTCTAGACCTTATTTTA--------------------------GGGTACA------------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681228 53 - 96509753 -------------------------------------aaaaaaa---------------------------------------------------------------------------------------------aGAACTTTGTAAATGTCTGT-------AGCTCTAGACCTTATTTTA--------------------------GGGTACA------------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7178327 53 - 13098629 -------------------------------------aaaaaaa---------------------------------------------------------------------------------------------agaaCTTTGTAAATGTCTGT-------AGCTCTAGACCTTATTTTA--------------------------GGGTACA------------------------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137714 53 - 4483953 -------------------------------------aaaaaaa---------------------------------------------------------------------------------------------agaaCTTTGTAAATGTCTGT-------AGCTCTAGACCTTATTTTA--------------------------GGGTACA------------------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767803 53 + 33263144 -------------------------------------aaaaaaa---------------------------------------------------------------------------------------------aaaaCTTCGTAAATGTCTGT-------AGCTCTAGACCTTATTTTA--------------------------GGGTACA------------------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14048662 53 - 14338769 -------------------------------------aaaaaaa---------------------------------------------------------------------------------------------agaaCTTTGTAAATGTCTGT-------AGCTCTAGACCTTATTTTA--------------------------GGGTACA------------------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987765 53 + 1946073 -------------------------------------aaaaaaa---------------------------------------------------------------------------------------------agaaCTTTGTAAATATCTGT-------AGTCCTAGACCTTATTTTA--------------------------GGGTACA------------------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2013973 53 - 2117846 -------------------------------------aaagaaC---------------------------------------------------------------------------------------------AGAACTTTGACATTGTCCGT-------AGCTCTAGACCTTATGTTA--------------------------GGGTGCA------------------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925438 53 - 16357246 -------------------------------------aaagaaC---------------------------------------------------------------------------------------------AGAACTTGGTAATTGTCCAT-------AGCTCTAGACCTTATTTTA--------------------------GGGTGCA------------------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409159 52 - 1807191 -------------------------------------aaGGAAC----------------------------------------------------------------------------------------------GAACTTTGTAATTGTCCGT-------AGCTCTAGACCTTATTTTA--------------------------GGGTGCT------------------------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 40023 53 - 704494 -------------------------------------aaagaaC---------------------------------------------------------------------------------------------AGAACTTTGTAATTGTCCGT-------AGCTCTAGACCTTATTTTA--------------------------GGGTGCA------------------------- i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36348235 172 - 42659167 -------------------------------------AGAAAAAGTCACCTATCCAAGAAGAGCACCAGACTTAGTAAATTAACTTGGAGTCAGAAGGTCTTAAGGGAACAAAATGGCAGATTGTTTCAGCAGTGTAAGATCTTTATGAATGGCCTT-------AGCTTTAGACTCTATTTTAGGTTCTCATTTCATCTCATTAAAGGGGGGGGCA------------------------- i otoGar3.GL873526 I 124 I 8 s mm10.chr15 82875835 65 + 104043685 -------------------------------------AAATAAA---------------------------------------------------------------------------------TGCAGCAGCATAAGATCTGCACAAATGCTGCA-------ATTTCTAGATCCTAGTTTA--------------------------GATTCTC------------------------- i mm10.chr15 I 5 C 0 s canFam3.chr10 46156844 66 - 69331447 -------------------------------------AGATAAT--------------------------------------------------------------------------------TTTCAGTACCCTAAGATCTTTGTGAATGGCTTT-------AGCTCTAGACTGCATTTCA--------------------------GATTTTC------------------------- i canFam3.chr10 C 0 I 22 s dasNov3.JH570235 138644 149 + 1056298 AGAATTATCAAAATACTTGGGGTTCTTAGAATATCCTAAAGGAA------------------------------------------------------------------CAAAAAGGCAGATCTTTCAGCCTAATAAGATCTCTGTGAATGGCTTTGATATAAAGCTCCAGACCCTCCTTTA--------------------------AGTTCTCATTTCatttaattaaaaaaaaaaaa i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5142323 121 - 6317780 I e micMur3.chr7 5781582 502 + 108171978 I a score=632382.000000 s hg38.chr22_GL383582v2_alt 145447 49 + 162811 AGCCATAACTA---TGATAAGGAGGGTGCCATGTA-TAAATGTAACAGACACT s panTro5.chr22 28925005 49 + 37823149 AGCCATAACTA---TTATAAGGAGGGTGCCATGTA-TAAATATAACAGACACT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199564 49 + 50109623 AGCCATAACTA---TTATAAGGAGGGTGCCATGTA-TAAATATAACAGACACT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222764 49 + 4464012 AGCCATAACTA---TGATAAGGAGGGTGCCATGTA-TAAATATAACAGACACT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715891 50 - 115148730 AGCCATAACTA---TGTTAAGGAGGGTGCCATGTATTAAATATAACAGACACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334915 49 + 92844088 AGCCATAACTA---TAATAAGGAGGGTGTCATGTA-TAAATATAACAGACACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681281 49 - 96509753 AGCCATAACTA---TAATAAGGAGGGTGTCATGTA-TAAATATAACAGACACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7178380 49 - 13098629 AGCCATAACTA---TAATAAGGAGGGTGTCATGTA-TAAATATAACAGACACC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137767 49 - 4483953 AGCCATAACTA---TAATAAGGAGGGTGTCATGTA-TAAATATAACAGACACC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767856 49 + 33263144 AGCCATAACTA---TAATAAGGAGTGTGTCATGTA-TAAATATAACAGACACC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14048715 49 - 14338769 AGCCATAACTA---TAATAAGGAGGGTGTCATGTA-TAAATATAACAGACACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987818 49 + 1946073 AGCCATAACTA---TAATAACGAGGGTGCCATGTA-TAAATATAACAGACACC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014026 49 - 2117846 AGCCGTAACTG---TAATCAGGAGGGTGCCATGTA-TAAATACAACAGATACT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925491 49 - 16357246 AGCTGTAACTG---TAATCAGGAGGGTGCCATGAA-TAAATATAACAGATACT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409211 49 - 1807191 AGCTGTAACTG---TAATCAGGAGGGTGCCATGTA-TAAATATAACAGATACT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 40076 49 - 704494 AGCCGTAACTG---TAATCAGGAGGGTGCCATGTA-TAAATGTAACAGATACT i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5142444 49 - 6317780 AGCCATAACTG---TAACAAGAAGGGTGGCATGTA-AAAATATAACAGACACA i proCoq1.NW_012136747v1 I 121 C 0 s otoGar3.GL873526 36348415 42 - 42659167 AGCCATGACTG------CGAGGAGGGTGCCATGTA-TAAACATGACACT---- i otoGar3.GL873526 I 8 C 0 s mm10.chr15 82875900 48 + 104043685 --GTATTACTAAGGGAAAAAGGCAGGAGGAATG---TAAATGTAGTAGACAAA i mm10.chr15 C 0 C 0 s canFam3.chr10 46156932 49 - 69331447 GATGGGGATTA---TAGTAACAAGGATGCCAAGTA-CACATATAACAGGCACT i canFam3.chr10 I 22 I 2 s dasNov3.JH570235 138793 48 + 1056298 aGGCA-AACTG---TAACAAGAAGAGTGTCAAGTG-TAAATATAACAGACACT i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5781582 502 + 108171978 I a score=1181827.000000 s hg38.chr22_GL383582v2_alt 145496 100 + 162811 GAGACAAAAG--------------------------------------------------------------------------------AAAACTACTCC----TGACAGCAGTTT--------------------------------------------------------------------------------------------GCTG-------TCTTTCCCAAGAGATTTGAGGAACAGTAACCATAAA-ACTTT----CCTCCTCCCTTCTCAACTGGGG s panTro5.chr22 28925054 100 + 37823149 GAGACAAAAG--------------------------------------------------------------------------------AAAACTACTCC----TGACAGCAGTTT--------------------------------------------------------------------------------------------GCTG-------TCTTTCCCAAGAGATTTGAGGAACAGTAACCATAAA-ACCTT----CCTCCTCCCTTCTCAACTGGGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199613 100 + 50109623 GAGACAAAAG--------------------------------------------------------------------------------AAAACTACTCC----TGACAGCAGTTT--------------------------------------------------------------------------------------------GCTG-------TGTTTCCCAAGAGATTTGAGGAACAGTAACCATAAA-ACCTT----CCTCCTCCCTTCTCAACTGGGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222813 100 + 4464012 GAGACAAAAG--------------------------------------------------------------------------------AAAACTACTCC----TGACAGCAGTTT--------------------------------------------------------------------------------------------GCCG-------TCTTTCCCAAGAGATTTGAGGAACAGTAACCATAAA-ACTTT----CCTCCTCCCTTCTCAACTGGGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106715941 100 - 115148730 GAGACAAAAG--------------------------------------------------------------------------------AAAACTACTCC----TGACAGCGGTTT--------------------------------------------------------------------------------------------GCCA-------TCTTTCCCAAGAGATTTGAGGGACAGTAACCATTAA-ACTTT----CCTCTTCCCTTCTCAACTGGGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84334964 94 + 92844088 GAGACAAAAG--------------------------------------------------------------------------------AAAACCACTCC----TGACAGCAGTTT--------------------------------------------------------------------------------------------GCCA-------TCTTTTCCAAGAGATTTG------AGTAACCATTAA-ACCTT----CCTCCTCCTTTCTCAATTGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681330 94 - 96509753 GAGACAAAAG--------------------------------------------------------------------------------AAAACCACTCC----TGACAGCAGTTT--------------------------------------------------------------------------------------------GCCA-------TCTTTTCCAAGAGATTTG------AGTAACCATTAA-ACCTT----CCTCCTCCTTTCTCAGTTGGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7178429 94 - 13098629 GAGACAAAAG--------------------------------------------------------------------------------AAAACCACTCC----TGACAGCAGTTT--------------------------------------------------------------------------------------------GCCA-------TCTTTTCCAAGAGATTTG------AGTAACCATTAA-ACCTT----CCTCCTCCTTGCTCAATTGGGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4137816 94 - 4483953 GAGACAAAAG--------------------------------------------------------------------------------AAAACCACTCC----TGACAGCAGTTT--------------------------------------------------------------------------------------------GCCA-------TCTTTTCCAAGAGATTTG------AGTAACCATTAA-ACCTT----CCTCCTCCTTTCTCAATTGGGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24767905 85 + 33263144 AAGACAAAAG--------------------------------------------------------------------------------AAAACCACTCC----TGACAGCAGTTT--------------------------------------------------------------------------------------------GCCA-------TCT---------GATTTG------AGTAACCATTAA-ACCTT----CCTCCTCCTTTCTCAATTGGGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14048764 94 - 14338769 GAGACAAAAG--------------------------------------------------------------------------------AAAACCACTCC----TGACAGCAGTTT--------------------------------------------------------------------------------------------GCCA-------TCTTTTCCAAGAGATTTG------AGTAACCATTAA-ACCTT----CCTCCTCCTTTCTCAATTGGGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 987867 94 + 1946073 GAGACAAAAG--------------------------------------------------------------------------------AAAACTACTCC----TGACATCAGTTT--------------------------------------------------------------------------------------------GCCA-------TCTTTTCCAAGAGATTTC------AGTAACCATTAA-ACCTT----CCTCCTCCTTTCTCAATTGGGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014075 94 - 2117846 GAGACAAAAG--------------------------------------------------------------------------------AAAACTACTCC----T---AACAGTTT--------------------------------------------------------------------------------------------GCCA-------TCTTTCCCAAGAGATTTAAGG---AATAATCATAAA-ATCTT----CCTCCTCCTTTCTCAAATGGGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925540 97 - 16357246 GAGACAAAAG--------------------------------------------------------------------------------AAAACTACTCC----TGACAACAGTTT--------------------------------------------------------------------------------------------GCCC-------TCTTTCCCAAGAGATTTAAGG---AATAACCATAAA-ATCTT----CCTCCTCCTTTCTCAAATGGGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409260 97 - 1807191 GAGACAAAAG--------------------------------------------------------------------------------AAAACTATTCC----TGACAACAGTTT--------------------------------------------------------------------------------------------GCCC-------TCTTTCCCAAGAGATTTAAGG---AATAACCATAAA-ATCTA----CCTCCTCCTTTCTCAAATGGGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 40125 97 - 704494 GAGACAAAAG--------------------------------------------------------------------------------AAAACTACTCC----TGACAACAGTTT--------------------------------------------------------------------------------------------GCCA-------TCTTTCCCAAGAGATTTGAAG---AATAACCATAAA-ATCGT----CCTCCGCCTTTCTCAAATGGGG i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5782084 100 + 108171978 GAGACAAAAG--------------------------------------------------------------------------------AAAACTACTCC----TGACCACTATCT--------------------------------------------------------------------------------------------CCTG-------TCTTTCCCAAGAGATTTGAGGAGCAATAACCATAAA-ACCCT----CCTTATCCCTCCTCAACTAGGG i micMur3.chr7 I 502 I 54 s proCoq1.NW_012136747v1 5142493 104 - 6317780 GAGACAAAAG--------------------------------------------------------------------------------AAAATTACTCC----TGACCACTGTCT--------------------------------------------------------------------------------------------CTTG-------TCTTTCCCAAGAGATTTGAGGAGCAATAACCATAAA-ACCCTCCTCCCTCATTCCTCCTCCACTGGGA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36348457 98 - 42659167 GAGACAAAAG--------------------------------------------------------------------------------AAAATTACTTC----TGACCATTGTCT----------------------------------------------------------------------------------------------TG-------TCTTTCACAAGAGATCTGAGGAGCAGTAACTTTAAA-ACCCT----CCTTCCGCCTCCTCAACTGGCG i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82875948 95 + 104043685 GAAATAAAGA--------------------------------------------------------------------------------AAA---ACTCC----TGATAACTGTTTT------------------------------------------------------------------------------------------AGCTT-------TCTTTCTCCAGAGGTCTGAGGAGCAGTGAGCATAAA-ACCTA----GCATCCC----CTCAACTGGTG i mm10.chr15 C 0 C 0 s canFam3.chr10 46156983 86 - 69331447 GAGACAAAAG--------------------------------------------------------------------------------AAA-CTACTCC----CGGCAACTGTTT--------------------------------------------------------------------------------------------GC---------TCTTTCCCAAGAGATCTGAGAAACAAAAGCCATAAA-ACTCT----C----------CTTGACTGGG- i canFam3.chr10 I 2 C 0 s dasNov3.JH570235 138841 284 + 1056298 GTGACAAAAGTGTTAGCAGTCTTTCCAAttttttaaggaggtacctggaatgtacctcatatatagaggcaggcactcaactgctgagcaacacccactccccaatgagagctgcttttttttcatttgtctgttttgtttgtttctaggaggtactgggcattgaaccagggaccttgtatatgggaagcaggcattcaaccacttgagctacatctgctccccTCCCAAATATATTAGGAGCAATAATCACTAACACCCT----CTTCCTTCCTCCTCAATTAGGG i dasNov3.JH570235 C 0 C 0 a score=247588.000000 s hg38.chr22_GL383582v2_alt 145596 18 + 162811 ACTTCTCTGATGTAATAT-- s panTro5.chr22 28925154 18 + 37823149 ACTTCTCTGATGTAATAT-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199713 18 + 50109623 ACTTCTCTGATGTAATAT-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222913 18 + 4464012 ACTTCTCTGATGTAATAT-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716041 18 - 115148730 ACTTCTCTGATGTAATAT-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335058 18 + 92844088 ACTTCTCTGATGTAATAT-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681424 18 - 96509753 ACTTCTCTGATGTAATAT-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7178523 18 - 13098629 ACTTCTCTGATGTAATAT-- i macNem1.NW_012012688v1 C 0 I 83 s cerAty1.NW_011999588v1 4137910 18 - 4483953 ACTTCTCTGATGTAATAT-- i cerAty1.NW_011999588v1 C 0 I 30 s chlSab2.chr19 24767990 18 + 33263144 ACTTCTCTGATGTAATAT-- i chlSab2.chr19 C 0 I 30 s manLeu1.NW_012102031v1 14048858 18 - 14338769 ACTTCTCTGATGTAATAT-- i manLeu1.NW_012102031v1 C 0 I 30 s colAng1.NW_012115588v1 987961 18 + 1946073 ACTTCTCTGATGTAATAT-- i colAng1.NW_012115588v1 C 0 I 30 s calJac3.chrUn_GL286373 2014169 18 - 2117846 ACTTCTCTGATGTAATGT-- i calJac3.chrUn_GL286373 C 0 I 2 s saiBol1.JH378157 8925637 18 - 16357246 ACTTCTCTGATGTAATGT-- i saiBol1.JH378157 C 0 I 2 s cebCap1.NW_016107750v1 1409357 18 - 1807191 ACTTCTTTGATGTAATGT-- i cebCap1.NW_016107750v1 C 0 I 2 s aotNan1.NW_018512389v1 40222 18 - 704494 ACTTCTCTGATGTAATGT-- i aotNan1.NW_018512389v1 C 0 I 2 s proCoq1.NW_012136747v1 5142597 18 - 6317780 GCTCCTTTGATGTAATAT-- i proCoq1.NW_012136747v1 C 0 I 5 s otoGar3.GL873526 36348555 18 - 42659167 GCTCCTTCAATGTGATAC-- i otoGar3.GL873526 C 0 I 3 s mm10.chr15 82876043 18 + 104043685 AGTCCTCTGATGTGATGA-- i mm10.chr15 C 0 I 6 s canFam3.chr10 46157069 18 - 69331447 CCTCCTTCAATGGACAGT-- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 139125 20 + 1056298 CCTCAATTGATATACTGTAT i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5782184 54 + 108171978 I a score=-6353.000000 s hg38.chr22_GL383582v2_alt 145614 14 + 162811 CAGG-----------------------------------------------------GAGAA-----------------------------------------------------GAACA s panTro5.chr22 28925172 14 + 37823149 CAGG-----------------------------------------------------GAGAA-----------------------------------------------------GAACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199731 14 + 50109623 CAGG-----------------------------------------------------GAGAA-----------------------------------------------------GAACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222931 14 + 4464012 CAGG-----------------------------------------------------GAGAA-----------------------------------------------------GAACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716059 14 - 115148730 CAGG-----------------------------------------------------GAGAA-----------------------------------------------------GAACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335076 14 + 92844088 CAGG-----------------------------------------------------GGGAA-----------------------------------------------------GAACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681442 14 - 96509753 CAGG-----------------------------------------------------GAGAA-----------------------------------------------------GAACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7178624 14 - 13098629 CAGG-----------------------------------------------------GAGAA-----------------------------------------------------GAACA i macNem1.NW_012012688v1 I 83 C 0 s cerAty1.NW_011999588v1 4137958 67 - 4483953 CAAGTGGTGCACACCAGGGAGCATACCAGGGAGAAGAACACCAGGGTGCACACCAGGGAGAA-----------------------------------------------------GAACA i cerAty1.NW_011999588v1 I 30 C 0 s chlSab2.chr19 24768038 67 + 33263144 CAAGTGGTGCACACCAGGGAGCATACCAGGGAGAAAAACACCAGGGTGCACACCAGGGAGAA-----------------------------------------------------GAACA i chlSab2.chr19 I 30 C 0 s manLeu1.NW_012102031v1 14048906 67 - 14338769 CAAGTGGTGCACACCAGGGAGCATACCAGGGAGAAGAACACCAGGGTGCACACCAGGGAGAA-----------------------------------------------------GAACA i manLeu1.NW_012102031v1 I 30 C 0 s colAng1.NW_012115588v1 988009 67 + 1946073 CAAC-----------------------------------------------------TGGTACACACCAGGGAGCATACCAGGGAGAAGAACACCAGGGTGCACACCAGGGAGAAGAACA i colAng1.NW_012115588v1 I 30 C 0 s calJac3.chrUn_GL286373 2014189 11 - 2117846 AAGG-----------------------------------------------------G---A-----------------------------------------------------GAACA i calJac3.chrUn_GL286373 I 2 C 0 s saiBol1.JH378157 8925657 14 - 16357246 CAGG-----------------------------------------------------GAGAA-----------------------------------------------------GAACA i saiBol1.JH378157 I 2 C 0 s cebCap1.NW_016107750v1 1409377 14 - 1807191 CAGG-----------------------------------------------------GAGAA-----------------------------------------------------GAACA i cebCap1.NW_016107750v1 I 2 C 0 s aotNan1.NW_018512389v1 40242 14 - 704494 CAGG-----------------------------------------------------AAGAA-----------------------------------------------------GAACA i aotNan1.NW_018512389v1 I 2 C 0 s otoGar3.GL873526 36348576 14 - 42659167 AGGG-----------------------------------------------------AAGAA-----------------------------------------------------GGGTG i otoGar3.GL873526 I 3 C 0 s mm10.chr15 82876067 12 + 104043685 GAGG-----------------------------------------------------AACCA-----------------------------------------------------AAA-- i mm10.chr15 I 6 C 0 s canFam3.chr10 46157087 14 - 69331447 -----------------------------------------------------ATTGGAAAA-----------------------------------------------------AAAGA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 139145 11 + 1056298 TAGA-----------------------------------------------------GTGAA-----------------------------------------------------GA--- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5142615 5 - 6317780 I e micMur3.chr7 5782184 54 + 108171978 I a score=281988.000000 s hg38.chr22_GL383582v2_alt 145628 30 + 162811 AGGGAACATTGGGTATCAACTGGTGC------ACAC- s panTro5.chr22 28925186 30 + 37823149 AGGGAACACTGGGTATCAACTGGTGC------ACAC- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199745 30 + 50109623 AGGGAACACTGGGTATCAACTGGTGC------ACAC- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222945 30 + 4464012 AGGGAACATTGGGTATCAACTGGTGC------ACAC- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716073 30 - 115148730 AGGGAACATTGGGTATCAACTGGTGC------ACAC- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335090 30 + 92844088 AGGGAACATTGGGTATCAACTGGTGC------ACAC- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681456 30 - 96509753 AGGGAACATTGGGTATCAACTGGTGC------ACAC- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7178638 30 - 13098629 AGGGAACATTGGGTATCAACTGGTGC------ACAC- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138025 30 - 4483953 AGGGAACATTGGGTATCAACTGGTGC------ACAC- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768105 30 + 33263144 AGGGAACATTGGGTATCAACTGGTGC------ACAC- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14048973 30 - 14338769 AGGGAACATTGGGTATCAACTGGTGC------ACAC- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988076 30 + 1946073 AGGGAACACTGGGTATCAACTGGTGC------ACAC- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014200 29 - 2117846 CGTT-ACCCTGGGTATCAACTAGCGC------ACAC- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925671 29 - 16357246 AGTT-ACCCTGGGTATCAACCAGTGC------ACAC- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409391 29 - 1807191 AGTT-ACCCTGGGTATCAACCAGCAC------ACAC- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 40256 29 - 704494 AGTT-ACCCTGGGTATCAACCAGCAC------ACAC- i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5142620 28 - 6317780 AGGGACTACTGGGTACCAAAAAGTAC------AT--- i proCoq1.NW_012136747v1 I 5 I 2 s otoGar3.GL873526 36348590 27 - 42659167 AGGGACTACTGGGTACCAGCCAGT-C------GT--- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82876079 26 + 104043685 ----------GGGTAGAAGTTGGTACTATTAGACAT- i mm10.chr15 C 0 I 2 s canFam3.chr10 46157101 30 - 69331447 GCAAAAGCCTGGGCTCCAGTCAGTAC------ACAA- i canFam3.chr10 C 0 I 9 s dasNov3.JH570235 139156 31 + 1056298 GGGGAAGACGCGGCAACAACCAGTAC------ACAGT i dasNov3.JH570235 C 0 C 0 e micMur3.chr7 5782184 54 + 108171978 I a score=4321282.000000 s hg38.chr22_GL383582v2_alt 145658 292 + 162811 CA-T-CTCTCTCCTGAAGTGACAGAAAGAACATTG---AGTAGTACTATCTTACCTAGAGTCAAACTAAATGACTTGAACAAAGAGACCAAG-AAAAACATGTTT----AGAAAATC--------ATCTAGAAATAGGATTTTATTTTAGTAAGCGAAGTGAACAAAAAATACAATTTTA-TTTGTACA---TACAATTGCTTCCACTATTAAATTTGTTTTCTATTGATTCTTCTGGGTCATCTGTtggaaaaa---gtactacatttagaattaagaaa-------tctaaatacttcctag------tcttgccacttgttctgtga s panTro5.chr22 28925216 292 + 37823149 CA-T-CTCTCTCCTGAAGTGACAGAAAGAATATTG---AGTAGTACTATCTTACCTAGAGTCAAGCTAAATGACTTGAACAAAGAGACCAAG-AAAAACATGTTT----AGAAAATC--------ATCTAGACAGAGGATTTTATTTTAGTAAGCAAAGTGAACAAAAAATACAATTTTA-TTTGTACA---TACAATTGCTTCCACTATTAAATTTGTTTTCTATTGATTCTCCTGGGTCATCTGTtggaaaaa---gtactacatttagaattaagaaa-------tctaaatacttcctag------tcttgccacttgttctgtga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41199775 292 + 50109623 CA-T-CTCTCTCCTGAAGTGACAGAAAGAACATTG---AGTAGTACTATCTTACCTAGAGTCAAACTAAATGACTTGAACAAAGAGACCAAG-AAAAACATGTTT----AGAAAATC--------ATCTAGACATAGGATTTTATTTTAGTAAGCAAAGTGAACAAAAAATACAATTTTA-TTTGTACA---TACAATTGCTTCCACTATTAAATTTGTTTTCTATTGATTCTCCTGGGTCATCTGTtggaaaaa---gtactacatttagaattaagaaa-------tctaaatacttcctag------tcttgccacttgttctgtga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3222975 293 + 4464012 CA-T-CTCTCTCCTGAAGTGACAGAAAGAACATTG---AGTAGTACTATCTTACCTAGAGTCAAACTAAATGACTTGAACAAAGAGACCAAGAAAAAACATGTTT----AGAAAATC--------ATCTAGAAATAGGATTTTATTTTAGTAAGCAAAGTGAACAAAAAATACAATTTTA-TTTGTACA---TACAATTGCTTCCACTATTAAATTTGTTTTCTATTGATTCTCCTGGGTCATCTGTtggaaaaa---gtactacatttagaattaagaaa-------tctaaatacttcctag------tcttgccacttgttctgtga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716103 293 - 115148730 CATT-CTCTCTCCTAAAGTGACAGAAAGAACACTG---AGTAGTACTATCTTACCTAGAGTCAAACTAAATGACTTGAAGAAAGAGACCAAG-AAAAACATGTTT----AGAAAATC--------ATCTAGAAATAGGATTTTATTTTAGTAAACAAAGTGAACAAAAAATACAATTTTA-TTTGTAGC---TACAATTGCTTCCACTATTAAATGTGTTTTCTATTGATTCTCCTGGGTCATCTGTtggaaaaa---gtactacatttagaattaggaaa-------tctaaatacttcctag------ttttgccatttgttctgtga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335120 295 + 92844088 CA-G-CTCTCTCCTGAAGAGACAGAAAGAACATTG---AGTAGTACTGTCGTACCTAGAGACAAACTAAATGACTTGAAGAAAGAGACCAAG-AAAAACATGTTT----AGAAAATC--------ATCCAGAAATAGGATTTTATTTTAGTAAGCAAAGTGAACAAAAAATACAATTTTA-TTTTAGCAATCTACAATTGCTTCCACTATTAAATTTATTTTCTATTGATTCTCCTGGGTCACCTGTtggaaaaa---gtactacattcagaattaggaaa-------tctaaatacttcctag------ttttgccacttgttctgtga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681486 295 - 96509753 CA-G-CTCTCTCCTGAAGAGACAGAAAGAACATTG---AGTAGTACTGTCGTACCTAGAGACAAACTAAATGACTTGAAGAAAGAGACCAAG-AAAAACATGTTT----AGAAAATC--------ATCCAGAAATAGGATTTTATTTTAGTAAGCAAAGTGAACAAAAAATACAATTTTA-TTTTAGCAATCTACAATTGCTTCCACTATTAAATTTATTTTCTATTGATTCTCCTGGGTCACCTGTtggaaaaa---gtactacattcagaattaggaaa-------tctaaatacttcctag------ttttgccacttgttctgtga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7178668 295 - 13098629 CA-T-CTCTCTCCTGAAGAGACAGAAAGAACATTG---AGTAGTACTGTCGTACCTAGAGACAAACTAAATGACTTGAAGAAAGAGACCAAG-AAAAACATGTTT----AGAAAATC--------ATCCAGAAATAGGATTTTATTTTAGTAAGCAAAGTGAACAAAAAATACAATTTTA-TTTTAGCAATCTACAATTGCTTCCACTATTAAATTTATTTTCTATTGATTCTCCTGGGTCACCTGTtggaaaaa---gtactacattcagaattaggaaa-------tctaaatacttcctag------ttttgccacttgttctgtga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138055 294 - 4483953 CA-T-CTCTCTCCTGAAGAGACAGAAAGAACATTG---AGTAGTACTGTCGTACCTAGAGACAAACTAAATGACTTGAAGAAAGAGACCAAG-AAAAACATGTTT----AGAAAATC--------ATCCAGAAATAGGATTTTATTTTAGTAAGCAAAGTGAACAAAAAATACAATTTTA-TTTTAGCAATCTACAATTGCTTCCACTATTAAATTTATTTTCTATTGATTCTCCTGGGTCACCTGTtggaaaaa---gtactacattcagaattaggaaa-------tctaaatacttcc-ag------ttttgccacttgttctgtga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768135 295 + 33263144 CA-T-CTCTCTCCTGAAGAGACAGAAAGAACATTG---AGTAGTACTGTCGTACCTAGAGACAAACTAAATGACTTGAAGAAAGAGACCAAG-AAAAACATGTTT----AGAAAATC--------ATCCAGAAATAGGATTTTATTTTAGTAAGCAAAGTGAACAAAAAATATAATTTTA-TTTTAGCAATCTACAATTGCTTCCACTATTAAATTTATTTTCTATTGATTCTCCTGGGTCACCTGTtggaaaaa---gtactacattcagaattaggaaa-------tctaaatacttcctag------ttttgccacttattctgtga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049003 295 - 14338769 CA-T-CTCTCTCCTGAAGAGACAGAAAGAACATTG---AGTAGTACTGTCGTACCTAGAGACAAACTAAATGACTTGAAGAAAGAGACCAAG-AAAAACATGTTT----AGAAAATC--------ATCCAGAAATAGGATTTTATTTTAGTAAGTAAAGTGAACAAAAAATACAATTTTA-TTTTAGCAATCTACAATTGCTTCCACTATTAAATTTATTTTCTATTGATTCTCCTGGGTCACCTGTtggaaaaa---gtactacattcagaattaggaaa-------tctaaatacttcctag------ttttgccacttgttctgtga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988106 293 + 1946073 CA-T-CTCTCTCCTGAAGAGACAGAA--AACATTG---AGTAGTACTGTCTTACCTAGAGACAAACTAAATGACTTGAAGAAAGAGACCAAG-AAAAACATGTTT----AGAAAATC--------ATCTAGAAATAGGATTTTATTTTAGTAAGCAAAGTGAACAAAAAATACAATTTTA-TTTTAGCAACCTACAATTGCTTCCACTATTAAATTTGTTTTCTACTGATCCTCCTGGGTCACCTGTtggaaaaa---gtactacattcagaattaggaaa-------tctaaatacttcctag------ttttgccacttgttctgtga i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014229 296 - 2117846 CA-T-TTCTGTCCTGAAACGACAGAAAGAACATTGAGTAGTAGTACTGTCTTACCTAGAGTTAAAC-AAATGACTTGAAGGAAGAGACCAAG-AAAAATATGTTT----AGAAAATC--------ATGTAGAAATAGGATTTTATTTTAGTAAGCAAAGTAAAAAAAAAATACAATTTTA-TTTTGGCAAGTTACAATTGCTTCCATGATTAAATTTGTTTTCTATTGATTCT-CTGGGTCATGTGTtagaaaaa---gtactatacttagaattaggaaa-------tctaaatacttcttag------ttttgccatttgttctgtga i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925700 297 - 16357246 CA-T-TTCTGTCCTGAAATGACAGAAAGAACATTGAGTAGTAGTACTGTCTTACCTAGAGTCAAAC-AAATGACTTGAAGGAAGAGACCAAG-AAAAGTATGTTT----AGAAAATC--------ATCTAGAAATAGGATTTTATTTTAGCAAGCAAAGTGAACAAAAAATACAGTTTTA-TTTTGGCAAGTTACAATTGCTTCCATGATCAAATTTGTTTTCTATTGATTCTCCTGGGTCATGTGTtggaaaaa---gtactatacttagaattgggaaa-------tctaaatacttcctag------ttttgccatttgttctgtga i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409420 297 - 1807191 CA-T-TTCTGTCCTGAAATGACAGCAAGAACATTGAGTAGTAGTACTGTCTTACCGAGAGTCAAAC-AAATGACTTGAAGGAAGAGACCAAG-AAAAATATGTTT----AGAAAATC--------ATCTAGAAATAGGATTTTATTTTAGTAAGCAAAGTGAACAAAAAATACAATTTTA-TTTTGGCAAGTTACAATTGCTTCCATGATTAAATTTGTTTTCTATTGATTCTCCTGGGTCATGTGTtggaaaaa---gtactatacttagaattaggtaa-------tctaaatacttcctag------ttttgccatttgttctgtga i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 40285 297 - 704494 CA-T-TTCTGTCCTGAAATGACAGAAAGAACATTGAGTAGTAGTACTGTCTTACCTAGAGTCAAAC-AAATGACTTGAAGGAAGAGACCAAG-AAAAATATGTTT----AGAAAATC--------ATCTAGAAATAGGATTTTATTTTAGTAAGCAAAGTGAACAAAAAATACAATTTTA-TTTTGGCAAGTTACAATTGCTTCCATGATTAAATTTGCTTTCTATTGATTCTCCTGGGTCATGTGTtggaaaaa---gtactatacttagaattaggaaa-------tctaaatacttcctag------ttttgccatttgttctgtga i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5782238 298 + 108171978 CA-T-CTCTCTCCTTAAGGGACAGAAAGACAA-TG---GGCATTCCTGTCTTGCCTACAGTCAAACTAAATGACATGAAGAAAAAGACCAAG-AAAAGTATGTTT----AAAAAATC--------ATCTAGAAATAGAATTTTATTTTAGTAAGCAAAATGAGC-AAAAATACAATTTTA-TTTTAGCACAGTACAATTGCTTCCCCTATTAAGCTTGTTTTCTATTGATTCTCCTGGgtgattcattggaaaaa----tactgtatttagaatcaggaaaac-taagtttaaatacttactag------ttttaccacttgttctgtga i micMur3.chr7 I 54 C 0 s proCoq1.NW_012136747v1 5142650 298 - 6317780 CA-T-CTCTCTTCTTAAGAGACAGAAAGATCA-TG---GGCATTCCTGTCTTGCCTACAGTCAAACTAAATGACATGAAGAAAGAGACCAAG-AAAAACATGTTT----AAAAAATC--------ATCTAGAAATAGAATTTTATTTTAGTAAGCAAAATGAAC-AAAAATACAATTTTA-TTTTAGCACGGTACAATTGCTTCCCCTATTAAGCTTGTTTTCTATTGATTCTCCTGGgtgattcattggaaaag----tactgtatttagaatcagtaaacc-taagtttaaatacttaatag------tttcatcacttcttctgtga i proCoq1.NW_012136747v1 I 2 C 0 s otoGar3.GL873526 36348617 258 - 42659167 AA-T-ATCTCTCTTTAAGGTACAGGAAGAAAA-TG---AGCACTGCTTTTTTGCCTA----CAAACTAAATAGCATGAAGACAGACACCCCC-CAAAAAATGTTT----AAAAAATC--------ATCTAGAAATAG------------------------------------AATTTTA-TTTTAACACAGTATAACTGCTTCCCCTATTAAGCTTGTTTTCTATTGATTCTCCTGGgtgatgcattggaaaaatacttactacatttagaatcaggaaacc-taagtttaaatac----tag------ttttgccacatattcc-tga i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82876107 298 + 104043685 CA-TACTAGTGTCTATGTTGGGACAAAGAATGGTT---AGCACTACTAT--TACCTACAGTCAAAATAA--------AATGAAGAAGTCaaa-aaaa-----ttt----ttaaagttttttttaagtctagaaatataattatattttaGTAATCAAAGTAA---GAAAACATACTTTTATTTTTAGCAAGGTACAACTATGTCC-CTACTAAGC-TGTTTGGTATTGATTCTTCTGAATAATACATTGAAGAAA---GTACTATATTTAGAAACAAGGAAACTTAAGTTTAAACACTTCCTAGgtttttttttgtttgtttttctgtta i mm10.chr15 I 2 I 282 s canFam3.chr10 46157140 295 - 69331447 CA-T-CTCTTCACTTACAGGATTGCAAGACCATCA---AGCACTGCTTT----CCTGTGGACAAACTAAATGTTTTAGAGAAAGACACCAAG-AAAAACATATTT----AAAAAATC--------ATCTGAAAATAGAATTTTATTTCAGCAGGCAAAATGAGC-AAAAATACAACTTTA-TTTTAGCAAGGTACAATTGCTTTCCCTATTAAACTTGTTTTCAATAGATTCTCCTAAGCCAtgcattggaaaaa----cactatatttagaatcagtaaa-cttatatttaaatacttgccag------ttttgccacctgttctgtga i canFam3.chr10 I 9 C 0 s dasNov3.JH570235 139187 301 + 1056298 CA-T-CTTTCTCCTTGTGGGACAGGGAGGGCATCA---CACATTTCC-TCTTACCCAGTGTTGAGCTAGATAACCTGAAGAACAAGACTAAG-AAAAACATGCTTTAAAAAAAAATC--------ATATGGAAATGTAATTTTATTTTAGCAATCAAAATGAAC-AAAAATACTATTTTA-TTTTAGCATGGTACAATTGTTTCCCCTATTAAACTTGTTTCCTATTGATTCTCCTGGgtgataccctggaaaaa--aatattatatttagaatcaggaaa-cctaaatttaaatactaac-ag------ttttgccagttgttctgt-- i dasNov3.JH570235 C 0 C 0 a score=2871238.000000 s hg38.chr22_GL383582v2_alt 145950 195 + 162811 cttgggcaagttatttaacccatatgtctcacattcttcacctgcaaaagtgg-agttaacctaccttgccaccacacggg-aatgtCCCACAG-TAAGTCTGCAAACAGCTAAGTACCATATAAATCAAAATTATCACTGTTAGAATTACCACCCTCTTTCCCTCTCTCAGGTAAAAACTTGAACCAATAATAAAAT s panTro5.chr22 28925508 195 + 37823149 cctgggcaagttatttaacccatatgtctcacattcttcacctgcaaaagtgg-agttaacctaccttgccaccacacagg-aatgtCCCACAA-TAAGTCTGCAAACAGCTAAGTACCATATAAATCAAAATTATCACTGTTAGAATTACCACCCTCTTTCCCTCTCTCAGGTAAAAACTTGAACCAATAATAAAAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200067 195 + 50109623 cctgggcaagttatttaacccatatgtctcacattcttcacctgcaaaagtgg-agttaacctaccttgccaccacacagg-aatgtCCCACAA-TAAGTCTGCAAACAGCTAAGTACCATATAAATCAAAATTATCACTGTTAGAATTACCACCCTCTTTCCCTCTCTCAGGTAAAAACTTGAACCAATAATAAAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223268 195 + 4464012 cttgggcaagttatttaacccatatgtctcacattcttcacctgcaaaagtgg-agttaacctaccttgccaccacacagg-aatgtCCCACAA-TAAGTCTGCAAACAGCTAAGTACCATATAAATCAAAATTATCACTGTTAGAATTACCACCCTCTTTCTCTCTCTCAGGTAAAAACTTGAACCAATAATAAAAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716396 195 - 115148730 cttgggcaagttatttaacccacatgtctcacattcttcatctgcaaaagtgg-agttaacctaccttgccaccgcacagg-aatgtCCCACAA-TAAGTCTGCAAACAGATAAGTACCATATAAATTAAAATCATCACTATTAGAATTACTGCCCTCTTTCCCTCTCTCAGGTAAAAACTTGAACCAATAATAAAAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335415 195 + 92844088 cttgggcaagttatttaacccatatgtctcacattcttcatctgcaaaaatgg-agttaacctaccttgccaccgtacagA-AATATCTCACAA-TAAGTCTGCAAACAGTTAAGTACCATGTAAATTAAAATTACCACTGTTAATATTACCACCCTCATTCCCTCTCTCAGGTAAAAACTTGAACCAATCATAAAAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681781 195 - 96509753 cttgggcaagttatttaacccatatgtctcacattcttcatctgcaaaaatgg-agttaacctaccttgccaccatacagA-AATATCTCACAA-TAAGTCTGCAAACAGTTAAGTACCATGTAAATTAAAATTACCACTGTTAATATTACCACCCTCATTCCCTCTCTCAGGTAAAAACTTGAACCAATCATAAAAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7178963 195 - 13098629 cttgggcaagttatttaacccatatgtctcacattcttcatctgcaaaaatgg-agttaacctaccttgccaccgtacagA-AATATCTCACAA-TAAGTCTGCAAACAGTTAAGTACCATGTAAATTAAAATTATCACTGTTAATATTACCACCCTCATTCCCTCTCTCAGGTAAAAACTTGAACCAATCATAAAAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138349 195 - 4483953 cttgggcaagttatttaacccatatgtctcacattcttcatctgcaaaaatgg-agttaacctaccttgccaccatacagA-AATATCTCACAA-TAAGTCTGCAAACAGTTAAGTACCATGTAAATTAAAATTATCACTGTTAATATTACCACCCTCATTCCCTCTCTCAGGTAAAAACTTGAACCAATCATAAAAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768430 195 + 33263144 cttgggcaagttatttaacccatatgtctcacattcttcatctgcaaaaatgg-agttaacctaccttgccaccgtacagA-AATATATCACAA-TAAGTCTGCAAACAGCTAAGTACCATGTAAATTAAAATTATCACTGTTAGAATTAGCACCCTCATTCCTTCTCTCAGGTAAAAACTTGAACCAATCATAAAAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049298 195 - 14338769 cttgggcaagttatttaacccatatgtctcacattcttcatctgcaaaaatgg-agttaacctaccttgccaccgtacagA-AATATCTCACAA-TAAGTCTGCAAACAGTTAAGTACCATGTAAATTAAAATTATCACTGTTAATATTACCACCCTCATTCCCTCTCTCAGGTAAAAACTTGAACCAATCATAAAAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988399 195 + 1946073 cttgggcaagttatttaacccatatgtttcacattcttcatctgcaaaaatgg-agttaacctaccttgccaccgtacaga-aatgtCTCACAA-TAAGTCTGCAAACAGCTAAGTATCATGTAAATTAAAATTATCACTGTTAGAATTACCGCCCTCATTCCCTCTCTCAGGTAAAAACTTGAACCAATCATAAAAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014525 194 - 2117846 cttgggcaagttatttaacccat--gtctcacattcttcatctgcaaaaatgg-agttaacctaccttgccacctcacagg-aatgtCCCACAATTAAGTTTGCTAACAGCTAAGTATCATATAAATTAAAATTATCACTGTTAGTATTACCACCCTCATTCCCTCTCTCACGTAAAAACTTGAACCAATAATAAAAC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8925997 193 - 16357246 cttgggcaagttatttaatccac--gtctcacattcttcatctgcaaaaatgg-agttaacctactttgccacctcacagg-aatgtCCCACAA-TAAGTTTGCTAACAGCTAAGTATCATATAAATTAAAATTATCACTGTTAGCATTACCACCCTCCTTCCCTCTCTCACGTAAAAACTTGAACCAATAATAAAAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409717 193 - 1807191 cttgggcaagttatttaacccac--gtctcacattcttcatctgcaaaaatgg-agttaacctaccttgccacctcacagg-aatgtCCCACAA-TAAGTTTGCTAACAGCTAAGTATCATATAAATTAAAATTATCACTGTTAGTATTACCACCTTCCTTCCCTCTCTCATGTAAAAACTTGAACCAATAATAAAAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 40582 193 - 704494 cttgggcaagttatttaacccac--gtctcacattcttcatctgcaaaaatgg-agttaacctaccttgccacctcacagg-aatgtCCCACAA-TAAGTTTGCTAACAGCTAAGTATCATATAAATTAAAATTATCACTGTTTGTATTACCACCCTCTTTCCCTCTCTAACGTAAAAACTTGAACCAATAATAAAAC i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5782536 191 + 108171978 cttaggcaagtcacttaaaacacacgtcccactttcctcatttgcaaaaatgt-agtta----accttgccacctcacaggAAATGTCCCATGA-TAAATTTGTAAAGTGCTAAGTA-CAGATAAATTAAAATTATCATTATTAATATTACCACCCTCTTTCCCTTTCCCAGGTAAAAATTTGAACCAATGACAAAAT i micMur3.chr7 C 0 I 71 s proCoq1.NW_012136747v1 5142948 190 - 6317780 cttaggcaagtcatttaaaacacatgtcccactttcctcatttgcaaaaatgg-agtta----accttgccacctcacagg-aatgtcccatga-taaatttgtaaactgctaagta-tgtataaattaaaattatcattattAATATTACCACCCTCTTTCCCTCTCCCAGGTAAAAATTTTAACCAATGACAAAAT i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36348875 180 - 42659167 cttaagcaagtcattt-aaccctaagtctcactttcctcatttg-aaaaatgg-agttaatctaccttgccacctcatagg-AATGGCCC---A-CAAATTTGTCGACTGCTAAGTA-CATATAAATT---------ATTATTAACATTACCACCCTCTTTCCTTTTCCCAGGTAAAAAACTGAACCAAAGACAAAAT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46157435 194 - 69331447 cttgggcaagttatttaacccgcaagtcccactttactcatctgcaaaaatggcagttaacctac-ttattgcctcacagg-aatgttccatga-taaatgtgtaaactgctaagtacCCCATAAATTAAAATGATCATTATTAGTATTACCATCCCCTCTGAATTTCTCAGGTAAATG-TTGAACCCATGAAAAAAC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 139488 182 + 1056298 cttgggcaagttatttaacctaaaaaacccacttccctcatttgcaaaaatgg-agttaacttaccttgccacctcacaga-aatgttCCACGA-TAAATCTGTAAACTGGTAAGTACCAAATAATTGAAAATTATCATTAGTAGTATTACCATCCTC--TCCCCGTCTCAGGTGTAAGTCTGAACC----------- i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82876405 282 + 104043685 I a score=169371.000000 s hg38.chr22_GL383582v2_alt 146145 12 + 162811 AAGTAAAAGACA s panTro5.chr22 28925703 12 + 37823149 AAGTAAAAGACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200262 12 + 50109623 AAGTAAAAGACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223463 12 + 4464012 AAGTAAAAGACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716591 12 - 115148730 AAGCAAAAGACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335610 12 + 92844088 AGGTAAAAGACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681976 12 - 96509753 AGGTAAAAGACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179158 12 - 13098629 AGGTAAAAGACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138544 12 - 4483953 AGGTAAAAGACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768625 12 + 33263144 AGGTAAAAGACA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049493 12 - 14338769 AGGTAAAAGACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988594 12 + 1946073 AGGTAAAAGACA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014719 12 - 2117846 AGGCAAAAGACA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926190 12 - 16357246 AGGCAAAAGACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409910 12 - 1807191 AGGCAAAAGACA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 40775 12 - 704494 AGGCAAAAGACA i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5143138 12 - 6317780 AGGCGAAAGACA i proCoq1.NW_012136747v1 C 0 I 60 s otoGar3.GL873526 36349055 12 - 42659167 AGGCAAAAGACA i otoGar3.GL873526 C 0 I 45 s canFam3.chr10 46157629 12 - 69331447 AGGCAAAAGACA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 139670 6 + 1056298 ------AAGTTG i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82876405 282 + 104043685 I e micMur3.chr7 5782727 71 + 108171978 I a score=89409.000000 s hg38.chr22_GL383582v2_alt 146157 7 + 162811 ccagaca s panTro5.chr22 28925715 7 + 37823149 ccagaca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200274 7 + 50109623 ccagaca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223475 7 + 4464012 ccagaca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716603 7 - 115148730 ccagaca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335622 7 + 92844088 ccagaca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681988 7 - 96509753 ccagaca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179170 7 - 13098629 ccagaca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138556 7 - 4483953 ccagaca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768637 7 + 33263144 ccagaca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049505 7 - 14338769 ccagaca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988606 7 + 1946073 ccagaca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014731 7 - 2117846 ccagaca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926202 7 - 16357246 Tcagaca i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409922 7 - 1807191 ccagaca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 40787 7 - 704494 ctggaca i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36349112 7 - 42659167 ACAGACA i otoGar3.GL873526 I 45 I 107 s dasNov3.JH570235 139676 7 + 1056298 CAAGACA i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82876405 282 + 104043685 I e canFam3.chr10 46157641 0 - 69331447 C e proCoq1.NW_012136747v1 5143150 60 - 6317780 I e micMur3.chr7 5782727 71 + 108171978 I a score=1522785.000000 s hg38.chr22_GL383582v2_alt 146164 181 + 162811 tggtggctcacgcctataatcccagcactttggg-----aggccgaggcaggcagatcacttgaggtcaggagttcaagatcagcctggccaacatggtgaaaccctgtctctaccaaaaatacaaaaattagctgggcatggtggcaggcacctgtaatcc------------------------gagaatcacttgcttgtacaccca s panTro5.chr22 28925722 179 + 37823149 tggtggctcacgcctataatcccagcactttggg-----aggccgaggcaggcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctttaccaaaaatacaaaaattagctgggcatggtggcaggcacctgtaatcc------------------------gagaatcacttgcttgt--accca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200281 179 + 50109623 tggtggctcacgcctataatcccagcactttggg-----aggccgaggcaggcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaactctgtctctaccaaaaatacaaaaattagctgggcatggtggcaggcacctgtaatcc------------------------gagaatcacttgcttgt--accca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223482 178 + 4464012 tggtggctcacgcctataatcccagcactttggg-----aggccgaggcaggcagatcacttgaggtcaggagttcaagaccagcctggccaatatggtgaaaccctgtctctactaaaaatac-aaaattaggtgggcatggtggcaggcacctgtaatcc------------------------gagaatcacttgcttgt--accct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716610 177 - 115148730 tggtggctcacgcctgtaatcccagcactttggg-----aggccgaggcaggcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaacc--gtctctactaaaaatacaaaaattaactgggcatggtggcaagcacctgtaatcc------------------------gagaatcacttgcttgt--accca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335629 184 + 92844088 cggtggctcatgcctgtaatcccagcattttgtaagcccaggctgaggtgggcagatcacttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccctgcctctactaaaaatacaaaaattagctaggcatggtggcagtcacctgtaatcc------------------------aagaatcacttgcttgt--accta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87681995 184 - 96509753 cggtggctcacgtctgtaatcccagcattttgtaagcccaggctgaggtgggcagatcacttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccctgcctctactaaaaatacaaaaattagctaggcatggtggcagtcacctgtaatcc------------------------aagaatcacttgcttgt--accta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179177 184 - 13098629 cggtggctcacgcctgtaatcccagcattttgtaagcccaggctgaggtgggcagatcacttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccctgcctctactaaaaatacaaaaattagctaggcatggtggcagtcacctgtaatcc------------------------aagaatcacttgcttgt--accta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138563 184 - 4483953 cggtggctcacgcctgtaatcccagcattttgtaagcccaggctgaggtgggcagatcacttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccctgcctctactaaaaatacaaaaattagctaggcatggtggcagtcacctgtaatcc------------------------aagaatcacttgcttgt--accta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768644 184 + 33263144 cggtggctcacgcctgtaatcccagcattttgtaagcccaggctgaggtgggcagatcacttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccctgcctctactaaaaatacaaaaattagctaggcatggtggcagtcacctgcaatcc------------------------aagaatcacttgcttgt--accta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049512 184 - 14338769 cggtggctcacgcctgtaatcccagcattttgtaagcccaggctgaggtgggcagatcacttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccctgcctctactaaaaatacaaaaattagctaggcatggtggcagtcacctgtaatcc------------------------aagaatcacttgcttgt--accta i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988613 179 + 1946073 cggtggctcacgcctgtaatcccagcattttggg-----aggctgaggtgggcagatcacttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccctgcctctactaaaaatacaaaaattagctgggcatggtggcagtcacctgtaatcc------------------------aagaatcacttgcttgt--accta i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014738 140 - 2117846 cggtggctcatgtctgcaatcctagcaccttggg-----aggctaaggtgggcagatcacttgaggtcaggagttcaaaaccagcctggccaacatggtgaaaccct-----------------------------------gtggcaggaacctgtcatct------------------------ga----caattgcttgt--acccg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926209 175 - 16357246 cggtggctcacgcctgcaatcctggcactttggg-----aggctaagctgggcagatcacttgaggtcaggagttcaaaaccagcctggccaacatggtgaaatcctgtatctactaaaaatataaaaattagctgagcatggtggcaggaacctgtaatct------------------------ga----caactgcttgt--actca i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1409929 175 - 1807191 cagtggctcatgcctgcaatcttagcactttggg-----aggctgagctgggcagatcatttgaggtcaggagttcaaaaccagcctgaccaacatggtgaaatcctgtatctactaaaaatataaaaatcagctgagcatggtggcaggaacccgtaatct------------------------ga----caactgcttgt--accca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 40794 175 - 704494 cggtggctcacgcctgcaatcctagcactttggg-----aggctaaggtgggcagatcacttgaggtcaggagttcaaaaccagcctggccaacatggtgaaaccctgtatctactaaaaatataaaaattagctgggcatggtggcaggaacctgtaatct------------------------ga----caattgcttgt--accca i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36349226 184 - 42659167 tggtggctcatgcctctaatactagcactctggg-----aagccaagtcgggtgggctgcctgagctcatgagtttgagactagttgagcaaa---agtgagaccctgtctct------------aaaaatagtctggtgttgtagtgggcacctgtagtcccacctactcaggaggttgaagcaagagaatca----cctga--accca i otoGar3.GL873526 I 107 C 0 s canFam3.chr10 46157641 29 - 69331447 ----------------------------------------------------------------------------------------AGCAACAAGG------------------AAAAAAACTAGAA-------------GAGGCA-------------------------------------------------------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 139683 52 + 1056298 ----------------------------------------------------------------------------------------AGCAACAAGGAGAAAACTTG----------------GAAGTTGGGCTGGACAAAGAAACATACCCTCA------------------------------------------------------ i dasNov3.JH570235 C 0 C 0 e mm10.chr15 82876405 282 + 104043685 I e proCoq1.NW_012136747v1 5143150 60 - 6317780 I e micMur3.chr7 5782727 71 + 108171978 I a score=272896.000000 s hg38.chr22_GL383582v2_alt 146345 26 + 162811 ggaagcagaggttgcagtgagccgag s panTro5.chr22 28925901 26 + 37823149 ggaagcagaggttgcagtgagccgag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200460 26 + 50109623 ggaagcagaggttgcagtgagccgag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223660 26 + 4464012 ggaagcagaggttgcagtgagccgag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716787 26 - 115148730 gtaggcagaggttgcagtgagccgag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335813 26 + 92844088 ggaggcagagcttgcagtgagccgag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682179 26 - 96509753 ggaggcagagcttgcagtgagccgag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179361 26 - 13098629 ggaggcagagcttgcagtgagccgag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138747 26 - 4483953 ggaggcagagcttgcagtgagccgag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768828 26 + 33263144 ggaggcagagcttgcagtgagccgag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049696 26 - 14338769 ggaggcagagcttgcagtgagccgag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988792 26 + 1946073 ggacgcagagcttgcagtgagctgag i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014878 26 - 2117846 gcaggcagaggttacagtgagccgag i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926384 26 - 16357246 ggaggcagaggttacagtgagccgag i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1410104 26 - 1807191 ggaggcagaagttacagtgagccgag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 40969 26 - 704494 ggaggcagaagttacagtgagccgag i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36349410 26 - 42659167 agagtttgagtatgctgtgagctgtg i otoGar3.GL873526 C 0 C 0 e mm10.chr15 82876405 282 + 104043685 I e dasNov3.JH570235 139735 0 + 1056298 C e canFam3.chr10 46157670 0 - 69331447 C e proCoq1.NW_012136747v1 5143150 60 - 6317780 I e micMur3.chr7 5782727 71 + 108171978 I a score=146124.000000 s hg38.chr22_GL383582v2_alt 146371 23 + 162811 atctcaccactgcac-actc--ca----gc s panTro5.chr22 28925927 23 + 37823149 atctcaccactgcac-actc--ca----gc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200486 23 + 50109623 atctcaccactgcac-actc--ca----gc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223686 23 + 4464012 atctcaccactgcac-actc--ca----gc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716813 23 - 115148730 atctcaccactgcac-actc--ca----gc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335839 23 + 92844088 atttcaacactgcac-actc--ca----gc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682205 23 - 96509753 atttcaacactgcac-actc--ca----gc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179387 23 - 13098629 atttcaacactgcac-actc--ca----gc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138773 23 - 4483953 atttcaacactgcac-actc--ca----gc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768854 23 + 33263144 atttcaacactgcac-acac--ca----gc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049722 23 - 14338769 atttcaacactgcac-actc--ca----gc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988818 23 + 1946073 atttcaacactgcac-actc--ca----gc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014904 21 - 2117846 atcacaccactgcac-actc--ca------ i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926410 21 - 16357246 atcacaccactgcac-actc--ca------ i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1410130 23 - 1807191 atcacacaactgcac-actc--cagc---- i cebCap1.NW_016107750v1 C 0 I 352 s aotNan1.NW_018512389v1 40995 24 - 704494 atcacaccattgcacgactc--ca--gc-- i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36349436 20 - 42659167 at---actatggcac-tcta--ct----ga i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82876687 22 + 104043685 ATCACAGTACCCCAC-ATTCATC------- i mm10.chr15 I 282 I 10 s canFam3.chr10 46157670 5 - 69331447 -------------------C--CA----GC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 139735 0 + 1056298 C e proCoq1.NW_012136747v1 5143150 60 - 6317780 I e micMur3.chr7 5782727 71 + 108171978 I a score=82754.000000 s hg38.chr22_GL383582v2_alt 146394 43 + 162811 ctggg--tgac--agtgagattccacttcaaaaaaac--aaacaaaaac s panTro5.chr22 28925950 35 + 37823149 ctagg--tg----agtgagattccacttcaaaaaaac--------aaac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200509 37 + 50109623 ctagg--tgac--agtgagattccacttcaaaaaaac--------aaac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223709 43 + 4464012 ctggg--tgac--agtgagattccacttcaaaaaaac--aaacaaaaac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716836 36 - 115148730 ctggg--tgac--agtgagattccacttcaaaacaa---------aaac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335862 25 + 92844088 ctggg--caac--agtgagattccacctc-------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682228 25 - 96509753 ctggg--caac--agtgagattccacctc-------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179410 32 - 13098629 ctggg--caac--agtgagattccacctcaaaaa-------------aa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138796 22 - 4483953 ctggg-----c--agtgagattccacctc-------------------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768877 44 + 33263144 ctggg--caac--agtgagattccacctcaaaaaaaac-aaaaaaacaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049745 29 - 14338769 ctggg--caac--agtgagattccacctcaa----------------aa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988841 26 + 1946073 ctggg--tgac--agtaagattccacctc-------------------c i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014925 28 - 2117846 --ggg--cgac--agtgagattccatctcaaaaa--------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926431 28 - 16357246 --gcg--caac--agtgagattccgtctccaaaa--------------- i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512389v1 41019 26 - 704494 ----g--cgac--agtgagattccatctcaaaaa--------------- i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36349456 43 - 42659167 --gag--caacaaagtgagattctgtctcaaaaaagaagaaagaggc-- i otoGar3.GL873526 C 0 T 444 s mm10.chr15 82876719 33 + 104043685 CTGAGATCAAC--TTCTAAACCAATCTTCAGAAAT-------------- i mm10.chr15 I 10 I 1 s canFam3.chr10 46157675 7 - 69331447 -------TGTC--AGT--------------------------------- i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 139735 0 + 1056298 C e proCoq1.NW_012136747v1 5143150 60 - 6317780 I e micMur3.chr7 5782727 71 + 108171978 I e cebCap1.NW_016107750v1 1410153 352 - 1807191 I a score=29961.000000 s hg38.chr22_GL383582v2_alt 146437 5 + 162811 aaa-aa s panTro5.chr22 28925985 5 + 37823149 aaa-aa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200546 5 + 50109623 aaa-aa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223752 5 + 4464012 aaa-aa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716872 5 - 115148730 aaa-aa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335887 3 + 92844088 --a-aa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682253 3 - 96509753 --a-aa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179442 5 - 13098629 aaa-aa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138818 5 - 4483953 aaa-aa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768921 5 + 33263144 aaa-aa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049774 5 - 14338769 aaa-aa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988867 5 + 1946073 aaa-aa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014953 6 - 2117846 aaacaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926459 5 - 16357246 aag-aa i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512389v1 41045 5 - 704494 aaa-aa i aotNan1.NW_018512389v1 C 0 I 335 s mm10.chr15 82876753 4 + 104043685 AGA-A- i mm10.chr15 I 1 C 0 e dasNov3.JH570235 139735 0 + 1056298 C e canFam3.chr10 46157682 0 - 69331447 C e otoGar3.GL873526 36349499 444 - 42659167 T e proCoq1.NW_012136747v1 5143150 60 - 6317780 I e micMur3.chr7 5782727 71 + 108171978 I e cebCap1.NW_016107750v1 1410153 352 - 1807191 I a score=15885.000000 s hg38.chr22_GL383582v2_alt 146442 5 + 162811 c---aaaa-- s panTro5.chr22 28925990 5 + 37823149 c---aaaa-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200551 5 + 50109623 c---aaaa-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223757 5 + 4464012 c---aaaa-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716877 8 - 115148730 caaaaaaa-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335890 5 + 92844088 a---aaaa-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682256 5 - 96509753 a---aaaa-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179447 5 - 13098629 a---aaaa-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138823 5 - 4483953 a---aaaa-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768926 5 + 33263144 c---aaaa-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049779 5 - 14338769 a---aaaa-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988872 5 + 1946073 a---aaaa-- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014959 4 - 2117846 ----aaaa-- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926464 4 - 16357246 ----aaaa-- i saiBol1.JH378157 C 0 C 0 s mm10.chr15 82876757 5 + 104043685 A---GAAA-- i mm10.chr15 C 0 C 0 s canFam3.chr10 46157682 5 - 69331447 -----CAACC i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512389v1 41050 335 - 704494 I e dasNov3.JH570235 139735 0 + 1056298 C e otoGar3.GL873526 36349499 444 - 42659167 T e proCoq1.NW_012136747v1 5143150 60 - 6317780 I e micMur3.chr7 5782727 71 + 108171978 I e cebCap1.NW_016107750v1 1410153 352 - 1807191 I a score=256881.000000 s hg38.chr22_GL383582v2_alt 146447 42 + 162811 aaacaaGTAAAAGACAACAAGGAAAAAA-ATGG-AAAAGAG----GTT s panTro5.chr22 28925995 42 + 37823149 aaaCAAGTAAAAGATAACAAGGAAAAAA-ATGG-AAAAGAG----GTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200556 42 + 50109623 aaaCAAGTAAAAGATAACAAGGAAAAAA-ATGG-AAAAGAG----GTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223762 41 + 4464012 aaacaaGTAAAAGACAACAAGG-AAAAA-ATGG-AAAAGAG----GTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716885 45 - 115148730 aaacaagtaaaagacaacaaga-aaaaa-aTGG-AAAAGAGGTTAGTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335895 47 + 92844088 aaacaagtaaaagacaataaGGAAAAAA-ATGGAAAAAGAGGTTAGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682261 47 - 96509753 aaacaagtaaaagacaataaGGAAAAAA-ATGGAAAAAGAGGTTAGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179452 47 - 13098629 aaacaagtaaaaGACAATAAGGAAAAAA-ATGGAAAAAGAGGTTAGCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138828 47 - 4483953 aaacaagtaaaaGACAATAAGGAAAAAA-ATGGAAAAAGAGGTTAGCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768931 47 + 33263144 aaacaaGTAAAAGACAATAAGGAAAAAA-ATGGAAAAAGAGGTTAGCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049784 47 - 14338769 aaacaagtaaaaGACAATAAGGAAAAAA-ATGGAAAAAGAGGTTAGCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988877 47 + 1946073 aaacaagtaaaaGACAATAAGGAAAAAA-ATGGAAAAAGAGGTTAGCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2014963 38 - 2117846 aaaaaGGTAAAATACAACATG--AAAAA-AATG-AAAA------AGCT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926468 44 - 16357246 aaaaaGGTAAAATACAACATT--AAAAA-ATAA-AAAAGAAGTTAGCT i saiBol1.JH378157 C 0 C 0 s otoGar3.GL873526 36349055 48 - 42659167 AGGCAAAAGACAAGCAACAAGAAAAAAACCTGGGGAAAAAGACTGGTT i otoGar3.GL873526 T 444 C 0 s mm10.chr15 82876762 42 + 104043685 AAAAAAGAGATAAGCAACAAG----AAA-ACAG-AAAACAGATTAGCC i mm10.chr15 C 0 C 0 s canFam3.chr10 46157687 20 - 69331447 AAACAAATGAAATACAACGG---------------------------- i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512389v1 41050 335 - 704494 I e dasNov3.JH570235 139735 0 + 1056298 C e proCoq1.NW_012136747v1 5143150 60 - 6317780 I e micMur3.chr7 5782727 71 + 108171978 I e cebCap1.NW_016107750v1 1410153 352 - 1807191 I a score=85473.000000 s hg38.chr22_GL383582v2_alt 146489 13 + 162811 AT----CAAACA--------AACAA s panTro5.chr22 28926037 13 + 37823149 AT----CAAACA--------AACAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200598 13 + 50109623 AT----CAAACA--------AACAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223803 13 + 4464012 AT----CAAACA--------AACAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716930 13 - 115148730 AT----CAAACA--------AACAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335942 13 + 92844088 AT----CAAACA--------AACAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682308 13 - 96509753 AT----CAAACA--------AACAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179499 13 - 13098629 AT----CAAACA--------AACAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138875 16 - 4483953 AT----CAAATA-----AACAACAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768978 16 + 33263144 AT----CAAACA-----AACAACAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049831 12 - 14338769 AT--------CA-----AACAACAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988924 16 + 1946073 AT----CAAACA-----AACAACAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015001 16 - 2117846 AT----CAAACA-----AACAAAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926512 16 - 16357246 AA----CAAACA-----AAAAACAA i saiBol1.JH378157 C 0 C 0 s otoGar3.GL873526 36349103 25 - 42659167 GTGAGTCAAACAGACAAAACAACAA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82876804 13 + 104043685 AC----AAATCA--------AACAA i mm10.chr15 C 0 I 1 s dasNov3.JH570235 139735 13 + 1056298 AT----CAAACC--------AACAA i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 41050 335 - 704494 I e canFam3.chr10 46157707 0 - 69331447 C e proCoq1.NW_012136747v1 5143150 60 - 6317780 I e micMur3.chr7 5782727 71 + 108171978 I e cebCap1.NW_016107750v1 1410153 352 - 1807191 I a score=137254.000000 s hg38.chr22_GL383582v2_alt 146502 10 + 162811 AATAAACCCT s panTro5.chr22 28926050 10 + 37823149 AATAAACCCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200611 10 + 50109623 AATAAACCCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223816 10 + 4464012 AATAAACCCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716943 10 - 115148730 AATAAACCCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335955 10 + 92844088 AATAAATCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682321 10 - 96509753 AATAAATCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179512 10 - 13098629 AATAAACCCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138891 10 - 4483953 AATAAACCCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24768994 10 + 33263144 AATAAACCCT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049843 10 - 14338769 AATAAACCCT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988940 10 + 1946073 AATAAACCCT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015017 10 - 2117846 AACAAACGTT i calJac3.chrUn_GL286373 C 0 I 247 s saiBol1.JH378157 8926528 10 - 16357246 AATAAACCTT i saiBol1.JH378157 C 0 C 0 s micMur3.chr7 5782798 10 + 108171978 AATAAACCCT i micMur3.chr7 I 71 C 0 s proCoq1.NW_012136747v1 5143210 10 - 6317780 aataaaccct i proCoq1.NW_012136747v1 I 60 C 0 s otoGar3.GL873526 36349128 10 - 42659167 AATAAACCCT i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82876818 10 + 104043685 AGCCAACCCT i mm10.chr15 I 1 C 0 s canFam3.chr10 46157707 7 - 69331447 ---AAACCCT i canFam3.chr10 C 0 I 3 s dasNov3.JH570235 139748 10 + 1056298 AATGACACCT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 41050 335 - 704494 I e cebCap1.NW_016107750v1 1410153 352 - 1807191 I a score=71896.000000 s hg38.chr22_GL383582v2_alt 146512 6 + 162811 AAAAAA s panTro5.chr22 28926060 6 + 37823149 AAAAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200621 6 + 50109623 AAAAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223826 6 + 4464012 AAAAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716953 6 - 115148730 AAAAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335965 6 + 92844088 AAAAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682331 6 - 96509753 AAAAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179522 6 - 13098629 AAAAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138901 6 - 4483953 AAAAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769004 6 + 33263144 AAAAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049853 6 - 14338769 AAAAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988950 6 + 1946073 AAAAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015274 6 - 2117846 aaaaGC i calJac3.chrUn_GL286373 I 247 C 0 s saiBol1.JH378157 8926538 5 - 16357246 -AAAAA i saiBol1.JH378157 C 0 C 0 s micMur3.chr7 5782808 6 + 108171978 AAAAAA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5143220 6 - 6317780 aaaaaa i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36349138 4 - 42659167 AAAA-- i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82876828 5 + 104043685 AAGAA- i mm10.chr15 C 0 C 0 s canFam3.chr10 46157717 6 - 69331447 AAAAAA i canFam3.chr10 I 3 C 0 s dasNov3.JH570235 139758 6 + 1056298 AAAAAA i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 41050 335 - 704494 I e cebCap1.NW_016107750v1 1410153 352 - 1807191 I a score=20385.000000 s hg38.chr22_GL383582v2_alt 146518 2 + 162811 -CA s panTro5.chr22 28926066 2 + 37823149 -CA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200627 2 + 50109623 -CA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223832 2 + 4464012 -CA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716959 2 - 115148730 -CA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335971 2 + 92844088 -CA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682337 2 - 96509753 -CA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179528 2 - 13098629 -CA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138907 2 - 4483953 -CA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769010 2 + 33263144 -CA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049859 2 - 14338769 -CA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988956 2 + 1946073 -CA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015280 2 - 2117846 -CA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926543 2 - 16357246 -CA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1410505 2 - 1807191 -CA i cebCap1.NW_016107750v1 I 352 C 0 s micMur3.chr7 5782814 2 + 108171978 -CA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5143226 2 - 6317780 -ca i proCoq1.NW_012136747v1 C 0 C 0 s canFam3.chr10 46157723 2 - 69331447 -CA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 139764 2 + 1056298 TT- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 41050 335 - 704494 I e mm10.chr15 82876833 0 + 104043685 C e otoGar3.GL873526 36349142 0 - 42659167 C a score=102089.000000 s hg38.chr22_GL383582v2_alt 146520 7 + 162811 CAATAAA s panTro5.chr22 28926068 7 + 37823149 CAATAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200629 7 + 50109623 CAATAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223834 7 + 4464012 CAATAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716961 7 - 115148730 CAATAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335973 7 + 92844088 CAATAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682339 7 - 96509753 CAATAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179530 7 - 13098629 CAATAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138909 7 - 4483953 CAATAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769012 7 + 33263144 CAATAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049861 7 - 14338769 CAATAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988958 4 + 1946073 C---AAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015282 7 - 2117846 CAATAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926545 7 - 16357246 CAATAAA i saiBol1.JH378157 C 0 I 248 s cebCap1.NW_016107750v1 1410507 7 - 1807191 CAATAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 41385 7 - 704494 CAATTAA i aotNan1.NW_018512389v1 I 335 C 0 s micMur3.chr7 5782816 7 + 108171978 CAATAAA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5143228 7 - 6317780 caaTAAG i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36349142 6 - 42659167 -AATAAA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82876833 7 + 104043685 CAACTTA i mm10.chr15 C 0 C 0 s canFam3.chr10 46157725 7 - 69331447 AAACAAA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 139766 7 + 1056298 AAATAAA i dasNov3.JH570235 C 0 C 0 a score=42172.000000 s hg38.chr22_GL383582v2_alt 146527 3 + 162811 TAA s panTro5.chr22 28926075 3 + 37823149 TAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200636 3 + 50109623 TAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223841 3 + 4464012 TAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716968 3 - 115148730 TAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335980 3 + 92844088 TAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682346 3 - 96509753 TAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179537 3 - 13098629 TAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138916 3 - 4483953 TAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769019 3 + 33263144 TAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049868 3 - 14338769 TAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988962 3 + 1946073 TAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015289 3 - 2117846 TAA i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1410514 3 - 1807191 TAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 41392 3 - 704494 TAA i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5782823 3 + 108171978 TAA i micMur3.chr7 C 0 C 0 s proCoq1.NW_012136747v1 5143235 3 - 6317780 TAA i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36349148 3 - 42659167 TAA i otoGar3.GL873526 C 0 C 0 s mm10.chr15 82876840 3 + 104043685 TAG i mm10.chr15 C 0 C 0 s canFam3.chr10 46157732 2 - 69331447 -AA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 139773 2 + 1056298 TA- i dasNov3.JH570235 C 0 C 0 e saiBol1.JH378157 8926552 248 - 16357246 I a score=805805.000000 s hg38.chr22_GL383582v2_alt 146530 62 + 162811 CTAC--TGATTGGTGTA-ACAGCACTCTGTGACAGGTAA-TTTT--TGTCATTCTCGAGTTAGGAAAG s panTro5.chr22 28926078 62 + 37823149 CTAC--TGATTGGTGTA-ACAGCACTCTGTGACAGGTAA-TTTT--TGTCATTCTCGAGTTAGGAAAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200639 62 + 50109623 CTAC--TGATTGGTGTA-ACAGCACTCTGTGACAGGTAA-TTTT--TGTCATTCTCGAGTTAGGAAAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223844 62 + 4464012 CTAC--TGATTGGTGTA-ACAGCACTCTGTGACAGGTAA-TTTT--TGTCATTCTCGAGTTAGGAAAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106716971 62 - 115148730 CTAC--CAATTGGTGTA-ACAGCACTCTGTGACAGCTAA-TTTT--TGTCATTCTCGAATTAGGAAAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84335983 62 + 92844088 CTAC--TGATTGGTGTA-ACAGCACTCTGTGACAGGTAA-TTTT--TATCATTCTCTAATTAGGAAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682349 62 - 96509753 CTAC--TGATTGGTGTA-ACAGCACTCTGTGACAGGTAA-TTTT--TATCATTCTCTAATTAGGAAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179540 62 - 13098629 CTAC--TGATTGGTGTA-ACAGCACTCTGTGACAGGTAA-TTTT--TGTCATTCTCTAATTAGGAAAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138919 62 - 4483953 CTAC--TGATTGGTGTA-ACAGCACTCTGTGACAGGTAA-TTTT--TGTCATTCTCTAATTAGGAAAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769022 62 + 33263144 CTAC--TGATTGGTGTA-ACAGCACTCTGTGACAGGTAA-TTTT--TGTCATTCTCTAATTAGGAAAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049871 62 - 14338769 CTAC--TGATTGGTGTA-ACAGCACTCTGTGACAGGTAA-TTTT--TGTCATTCTCTAATTAGGAAAG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 988965 62 + 1946073 CTAC--GGATTGGTGTA-ACAGCACTCTGTGACAGGTAA-TTTT--TGTCATTCTCTAATTAGGAAAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015292 62 - 2117846 CTAC--TGACTGGTGTC-ACAGCACTCTGTGACAGGTAATTTTT--TGTCATTCT-TAATTGAGAAAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926800 59 - 16357246 CTAC--TGACTGGTGTC-ACAGCACTC--TGACAAGTAA-TTTT--TGTCATTCT-TAATTAGGAAAG i saiBol1.JH378157 I 248 C 0 s cebCap1.NW_016107750v1 1410517 61 - 1807191 CTAC--TGACTGGTGTC-ACAGCACTCTGTGACAGGTAA-TTTT--TGTCATTCT-TAATTAGGAAAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 41395 61 - 704494 CCAC--TGACTGATGTC-ACAGAGCTCTGTGACAGGTAA-TTTT--TGTCATTCT-TAATTAGGAAAG i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5782826 58 + 108171978 CTAC--TGATTGGTAG---AACCATTCTGTGACAGGTAA-CTTTTATGTCATTCTCTAA----GAAAG i micMur3.chr7 C 0 I 1 s proCoq1.NW_012136747v1 5143238 58 - 6317780 CTAC--TGATTGGTAG---AAGCACTCTGTGACAGGTAA-CTTTTATGTTATTTTCTAA----GAAAG i proCoq1.NW_012136747v1 C 0 I 1 s otoGar3.GL873526 36349151 60 - 42659167 CTAC--TGTTTGGTGGA-AAACCACTCTGTGACAGGTAA-CCTTTATGTCATTCTCTAA----GAAAG i otoGar3.GL873526 C 0 I 606 s mm10.chr15 82876843 52 + 104043685 --------------CAA-AGACTACTCAGCAGCAGTTAA-TTTCCACATCACTGTCTAATGAGGAAAG i mm10.chr15 C 0 I 6 s canFam3.chr10 46157734 66 - 69331447 CTGCTATGACTGATAGA-AAACCACTCTGTGACAGCTAA-TTCCTATGTCATTCTCTAATTAAGAAAG i canFam3.chr10 C 0 I 1 s dasNov3.JH570235 139775 60 + 1056298 CTAC---GATTGAAGGATAAACCTTTGTGTGATAGTTAA-TTTCTACATCATTCTCTAA----GAAAA i dasNov3.JH570235 C 0 C 0 a score=4556.000000 s hg38.chr22_GL383582v2_alt 146592 1 + 162811 -A s panTro5.chr22 28926140 1 + 37823149 -A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200701 1 + 50109623 -A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223906 1 + 4464012 -A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106717033 1 - 115148730 -A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84336045 1 + 92844088 -A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682411 1 - 96509753 -A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179602 1 - 13098629 -A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138981 1 - 4483953 -A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769084 1 + 33263144 -A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049933 1 - 14338769 -A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 989027 1 + 1946073 -A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015354 1 - 2117846 -A i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926859 1 - 16357246 -A i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1410578 1 - 1807191 -A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 41456 1 - 704494 -A i aotNan1.NW_018512389v1 C 0 C 0 s mm10.chr15 82876901 1 + 104043685 -A i mm10.chr15 I 6 C 0 s dasNov3.JH570235 139835 1 + 1056298 C- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46157800 1 - 69331447 I e otoGar3.GL873526 36349211 606 - 42659167 I e proCoq1.NW_012136747v1 5143296 1 - 6317780 I e micMur3.chr7 5782884 1 + 108171978 I a score=3996252.000000 s hg38.chr22_GL383582v2_alt 146593 269 + 162811 TCCCAC-ACCCTGGGATCTACA-GTCCATTCATAGAAAT----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAATGAAGAATGCCGACGGAGCGCATTCTTAATCTATATGGCAAGAACTACAAGCCACAGGACCAAT-CCCCA-CCCTCCCCACAGAGGGACAGTGGCCTGAC--AGTT-GGAG-CTCTACTTGGAGGC--AGATGGCCTCTA----AAGTGC----AAGAGTTTTCCCTTCTTCCCTGAC-CACTGGCATGCA--ATTAGCAAACACCCTAAC s panTro5.chr22 28926141 269 + 37823149 TCCCAC-ACCCTGGGATCTACA-GTCCATTCAAAGAAAT----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAATGAAGAATGCCGACGGAGCGCATTCTTAATCTATATGGCAAGAACTATAAGCCACAAGACCAAT-CCCCA-CCTTCCCCACAGAGGGACAGTGGCCTGAC--AGTT-GGAG-CTCTACTTGGAGGC--AGATAGCCTCTA----AAGTGC----AAGAGTTTTCCCTTCTTCCCTGAC-CACTGGCATGCA--ATTAGCAAACACCCTAAC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200702 269 + 50109623 TCCCAC-ACCCTGGGATCTACA-GTCCATTCAAAGAAAT----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAATGAAGAATGCCGACGGAGCGCATTCTTAATCTATATGGCAAGAACTATAAGCCACAAGACCAAT-CCCCA-CCTTCCCCACAGAGGGACAGTGGCCTGAC--AGTT-GGAG-CTCTACTTGGAGGC--AGATAGCCTCTA----AAGTGC----AAGAGTTTTCCCTTCTTCCCTGAC-CACTGGCATGCA--ATTAGCAAACACCCTAAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3223907 269 + 4464012 TCCCAC-ACCCTGGGATCTACA-GTCCATTCATAGAAAT----CACAGCAGGGTTAAATCCTCATCAGTC-CT-CTAATTCACAATGAAGAATGCCGACAGAGCGCATTCTTAATCTATATGGCAAGAACTATAAGCCACAAGACCAAT-CCCCA-CCCTCCCCACAAAGGGACAGTGGCCTGAC--AGTT-GGAG-CTCTACTTGGAGGC--AGATGGCCTCTA----AAGTGC----AAGAGTTTTCCTTTGTTCCCTGAC-CACTGGCAAGCA--ATTAGCAAACACCCTAAC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106717034 269 - 115148730 TCCCAC-ACCCTGGGATCTACA-GTCCATTCACAGAAAT----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAATGAAGAATGCCGACAGAGCGCATTCTTAATCTATATGGCAAGAACTATAAGCCACAAGACCAAT-CCCCA-CCCTCCCCACAGAGGGACAGTGGCCTTAC--AGTT-GGAG-CTCTACTTGGAGGC--AGATGGCCTCTA----AAGTGC----AAGAGTTTTCCCTCCTTCCCTGAC-CACTGGCATGCA--ATTAGCAAACACCCTAAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84336046 266 + 92844088 TCCCAC-ACCCTGGAATCTACA-GTCCATTCATAGAAAT----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAACGAAGAATGCCGACGGAGCGCATTCTTACTCTATATGACAAGAACTACAAGCCACAAGACCAAT-CCCCA-CCCTCCCCACAGAGGGACAGTGGCCTGAC--AGTT-GGAG-CTCTACTTGGAAGC--AGACGACCTCTA----AAGTGC----AAGTTTTCTCCCTCCTTCCCTGAC-CTCTGGCATGAA--ATTAGCA---ACCCTAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682412 266 - 96509753 TCCCAC-ACCCTGGAATCTACA-GTCCATTCATAGAAAT----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAACGAAGAATGCCGACGGAGCACATTCTTACTCTATATGACAAGAACTACAAGCCACAAGACCAAT-CCCCA-CCCTCCCCACAGAGGGACAGTGGCCTGAC--AGTT-GGAG-CTCTACTTGGAAGC--AGACGACCTCTA----AAGTGC----AAGTTTTCTCCCTCCTTCCCTGAC-CTCTGGCATGAA--ATTAGCA---ACCCTAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179603 266 - 13098629 TCCCAC-ACCCTGGAATCTACA-GTCCATTCATAGAAAT----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAACGAAGAATGCTGACGGAGCGCATTCTTACTCTATATGGCAAGAACTACAAGCCACAAGACCAAT-CCCCA-CCCTCCCCACAGAGGGACAGTGGCCTGAC--AGTT-GGAG-CTCTACTTGGAAGC--AGACGACCTCTA----AAGTGC----AAGTTTTCTCCCTCCTTCCCTGAC-CTCTGGCATGAA--ATTAGCA---ACCCTAAC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4138982 266 - 4483953 TCCCAC-ACCCTGGAATCTACA-GTCAATTCATAGAAAT----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAACGAAAAACGCCGACGGAGCGCATTCTTACTCTATATGGCAAGAACTACAAGCCACAAGACCAAT-CCCCA-CCCTCCCCACAGAGGGACAGTGGCCTGAC--AGTT-GGAG-CTCTACTTGGAAGC--AGACGGCCTCTA----AAGTGC----AAGTTTTCTCCCTCCTTCCCTGAC-CTCTGGCATGAA--ATTAGCA---ACCCTAAC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769085 269 + 33263144 TCCCAC-ACCCTGGAATCTACA-GTCCATTAACAGAAAT----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAACGAAGAATGCCGACGGAGCGCATTCTTACTCTATATGGCAAGAACTACAAGCCACAAGACCAAT-CCCCA-CCCTCCCCACAGAGGGACAGTGGCCTGAC--AGTT-GGAG-CTCTACTTGGAAGC--AGACCGCCTCTA----AAGTGC----AAGTTTTCTCCCTCCTTCCCTGAC-CTCTGGCATGAA--ATTAGCAAACACCCTAAC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14049934 267 - 14338769 TCCCAC-ACCCTGGAATCTACAGGTCCATTCATAGAAAT----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAACGAAGAATGCCGACGGAGCGCATTCTTACTCTATGTGGCAAGAACTACAAGCCACAAGATCAAT-CCCCA-CCCTCCCCACAGAGGGACAGTGGCCTGAC--AGTT-GGAG-CTCTACTTGGAAGC--AGACGGCCTCTA----AAGTGC----AAGTTTTCTCCCTCCTTCCCTGAT-CTCTGGCATGAA--ATTAGCA---ACCCTAAC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 989028 269 + 1946073 TCCCAC-ACCCTGGGATCTATA-GTCCATTCATAGAAAT----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAACGAAGAATGCCGACGGAGCGCATTCTTACTCTATATGGCAAGAACTACAAGCCACAAGACCAAT-CCCCA-CCCTCCCCACAGAGGGACAGTGGCCTGAC--AGTT-GGAG-CTCTACTTGGAAGC--AGAAGGCCTCTA----AAGTGC----AAGTTTTCTCCCTCCTTCCCTGAC-CTCTGGCATGAA--ATTAGCAAACACCCTAAC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015355 267 - 2117846 TCCCAC-GCCTTGGGATCTACA-GTCCATTCATAGAAAG----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAGAGAAGAATGCCGACAGAGCACATTCTTACTGTACATGGCAAAAACTATAAGCCACAAGGCCAATCCCCCA-CCCTCCCCACAGAGGGACAGTGGCCTGAC--AGTTGGGAG-CCCTACTTGGCGGC--AGATGACCTCTT----AAGTAC----AAGAGTTTTTCTTCCTTCACTGAC-CACTGGCATGAA--ATTAGCAAACGCC----C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8926860 269 - 16357246 TCCTGT-ACCTTGGGATCTACG-GTCCATTCATAGAAAG----CACAGCAGGGTTAAATCCTCATCAATC----CTGATTCACAAAGAAGAATGCCGACGGAGCACATTCTTACTGTACATGGCAAGAACTATAAGCCACAAGACCAATCCCCCA-CCCTCCCCACAGAGGGACAGTGGCCTGAT--AGTTGGGAG-CCCTACTTGGTGGC--AGATGACCTCTG----AAGTAC----AAGAGTTTTTCTTCCTTCACTGAC-CACTGACATGAA--ATTAGCAAACACCCTAAC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1410579 271 - 1807191 TCCCAC-ACCTTGGGATCTACA-GTCCATTGATAGAAAA----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAAAGAAGAATGCCAACGGAGCACATTCTTACTGTACATAGCAAGAACTAGAAGCCACAAGACCAATCCCCCA-CCCTCCCCACAGAGGGACAGTGGCCTGAC--ATTTGGGAG-CCCTACTTGATGGC--AGATGACCTCTA----AAGTAC----AAGAGTTCTTCTTCCTTCACTGAC-CACTGGCATGAA--ATTAGCAAACACCCTAAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 41457 267 - 704494 TCCCAC-ACCTCGGGATCTACA-GTCCATTCATAGAAAG----CACAGCAGGGTTAAATCCTCATCAATC-CT-CTAATTCACAAAGAAGAATGCCGACGGAGCACATTCTTACTGTACATGGCAAAAACTATAAGCCACAAGACCAATCCCCCA-CCCTCCCCAGAGAGGGACAGTGGCCTGAC--AGTTGGGAG-CCCTACTTGGCGGC--AGATGACCTCTA----AAGTAC----AAGAGTTTTTCTTCCTTCACTGAC-CACTGGCATGAA--AGTAGCAAACACC----C i aotNan1.NW_018512389v1 C 0 C 0 s micMur3.chr7 5782885 264 + 108171978 TTACAC-ACACTGGGATCTACA-GCCCATTCATAAAAAT----CACAGCAGAGTTAAATCCTCATTAATC-CT-CTAATTCACATTCAAGAATGCCAGGAGAGCACATTCTTATTCTACATGGCAAG-------AACCACAAGACCAAT-CCCTC-CCCTCCCCACTGAGGGACCACTGCCTGAC--TGCT-GGAG-CCCCACTTGGAGGC--AGACAGCCTCTA----AAGTGC----AAAAGTTCCTCTTCCTTCCCTGGC-CACTAGCATAAATAATTAGCAAACACTCTAAC i micMur3.chr7 I 1 N 0 s proCoq1.NW_012136747v1 5143297 264 - 6317780 TTACAC-ACCCTGGGATCTATA-GCCCATTCATAAAAAT----CACAGCAGCGTTAAATCCTCATTAATC-CT-CTAATTCACAATCAAGAATGCCAAGAGAGCACATTCTTATTCTACATGGCAAG-------CGCCACAAGACCAAT-CCTCA-CCCACCCCACAGAGGGACCACCGCCTGAC--TGGT-GGAG-GCCCACTTGGAGGC--AGACAGACTCTA----AAGTGC----AAGAGTTTCTCTTCCTTCACCGAC-CGCTAGCATGAATTATTAGCAAACACCCTAAC i proCoq1.NW_012136747v1 I 1 C 0 s otoGar3.GL873526 36349817 250 - 42659167 TTACAT-ACTCTGGGACCTA-----CCATTCATAAAAAGCACACACAGCAGGGTTAAATCTTCATCAATC-CT-CTAATTCACAATTAAGAATGCCAAGAGAGCACATTCTTATTCTACCTGGCAAG-------AGCCACAAGCCCAAT-CTCCA-CCTTCCCCACAGAGGGACAGTGGCCTCAC--TGTT-GGGGAGCCTACTTGGAGGC--AGACAG-----------------------AGTTTCCCTTCCTTCCCTGAC-CACTGGCATGAATAATTAATAAACACCCTAAC i otoGar3.GL873526 I 606 C 0 s mm10.chr15 82876902 255 + 104043685 TCCCACTATCCTGGGCTCTACA-GTCTATTCATAAAAAC------------------ATCCTCAACATCCTCT-CTAATT--CAGTCAAGAATGCAAAGGG-----CCTCTCACATCACACTGTAGTGACCGAAAGCCACATGCCTAGT-TGCTA-CACTTCCTAACCAGGAACACT-GCCTGCC--TTTC-CCAA-CCCGGCTTAGAGGTAGAGACAACCTCTCAAGTAAGTGC----AAGAATCTTTCTTTCTTACCTAAT-CACTGGCATAAA--GCTAGTAAACACCTGAGC i mm10.chr15 C 0 I 1 s canFam3.chr10 46157801 271 - 69331447 TCCCAC-ACCCGGGGATCTACA-GTCCATTCATAAAAAT----CACAGCAGAGTTAAATCCTCACCAGTC-CTCCTAATTCACAATCAA-AATGCCAACAGAGCACATTCTTACTCCATA-GGCAAGAGCCAC-AGCCACAGGACCAAC-CCCTACCCCTTCCCACTGAGGGACAGTGGCCTGAC--TGTT-GGAG-ACCCACTGGGAGGT--AGCTGGTCCCTG----CAGCGCTGGAGAGAGTATCTCTTCCTTCCCTGACACACTGGCATGAA--ATTAGCAAACACC--AAC i canFam3.chr10 I 1 C 0 s dasNov3.JH570235 139836 268 + 1056298 TCCCAT-GTCCTGGGATCTACA-GCCCATTCATAAAAAT----CACAGCAGGGTTAAATCTTCATCTCTT-CTTCTAAGTCACAATCAAGAATACCAATGG-GCACAGTCTTAGTCTATCTAG--AGAGCTGCAAACTAGAAGACCACT-TTCCA-CCCTCCCTACCTAGGGACTGTGGACTGATTATGTC-AGAG-AACCACTCAGAGGC--AGCAGGCCTCTA----AATTGCAG--AAGAGTGTATCTTCTTTCCCTGAT-GA-TGGCACAAA--ATTAGCAAATATC--AAC i dasNov3.JH570235 C 0 C 0 a score=333133.000000 s hg38.chr22_GL383582v2_alt 146862 22 + 162811 CCCAGTCATTCTGA---------------AATAAGCC s panTro5.chr22 28926410 22 + 37823149 CCCAGTCATTCTGA---------------AATAAGCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200971 22 + 50109623 CCCAGTGATTCTGA---------------AATAAGCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3224176 22 + 4464012 CCCAGTCATTCTGA---------------AATAAACC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106717303 22 - 115148730 CCCAGTCATTCTGA---------------AATAAGCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84336312 22 + 92844088 CCCAGTCATTCTGA---------------AATAAGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682678 22 - 96509753 CCCAGTCATTCTGA---------------AATAAGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179869 22 - 13098629 CCCAGTCATTCTGA---------------AATAAGCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4139248 22 - 4483953 CCCAGTCATTCTGA---------------AATAAGCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769354 22 + 33263144 CCCAGTCATTCTGA---------------AATAAGCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14050201 22 - 14338769 CCCAGTCATTCTGA---------------AATAAGCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 989297 22 + 1946073 CCCAGTCATTCTGA---------------AATAAGCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015622 22 - 2117846 CTCAGTCATTCTGA---------------AATAAACC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8927129 22 - 16357246 CTCAGTCATTCTGA---------------AATAAACC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1410850 22 - 1807191 CTCAGTCATTCTGA---------------AATAAACC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 41724 22 - 704494 CTCAGTCATTCTGA---------------AATAAACC i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5143561 22 - 6317780 CTCAGTCATTCTGA---------------AGTAAGCC i proCoq1.NW_012136747v1 C 0 I 2142 s otoGar3.GL873526 36350067 22 - 42659167 CTCAGTTATTCTGA---------------AATAAGTC i otoGar3.GL873526 C 0 I 3 s mm10.chr15 82877158 37 + 104043685 TCAAGTCATTCTAAATATGTCCAGAGAGCAAAAAGCT i mm10.chr15 I 1 C 0 s canFam3.chr10 46158072 22 - 69331447 TTCAGTGATTCTGA---------------AATAAGCC i canFam3.chr10 C 0 I 18 s dasNov3.JH570235 140104 23 + 1056298 TTTGGTTCTTCTGAG--------------GATGAATC i dasNov3.JH570235 C 0 C 0 a score=798993.000000 s hg38.chr22_GL383582v2_alt 146884 72 + 162811 AATGGAGAG------------------------TC--ACCTGCAATCCTAAATTTTGAAAAT-AAAAA----------AGTCAAAGAGACACAAACATTCTATGAAAAA s panTro5.chr22 28926432 72 + 37823149 AATGGAGAG------------------------TC--ACCTGCAATCCTAAATTTTGAAAAT-AAAAA----------AGTCAAAGAGACACAAACATTCTATGAAAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41200993 72 + 50109623 AATGGAGAG------------------------TC--ACCTGCAATCCTAAATTTTGAAAAT-AAAAA----------AGTCAAAGAGACACAAACATTCTATGAAAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3224198 72 + 4464012 AATGGAGAG------------------------TC--ACCTGCAATCCTAAATTTTGAAAAT-AAAAA----------AGTCAAAGAGACACAAACATTCTATGAAAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106717325 71 - 115148730 AATGGAGAG------------------------TC--ACCTGCAATCCTGAATTTTCAAAATAAAAAA----------AGTC--AGAGACACAAACATTCTATGAAAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84336334 72 + 92844088 AATGGAGAG------------------------TC--ACCTGCAATCCTAAATTTTGAAAAC-AAAAC----------AGTCAAAGAGACACAAACATTCTATGAAAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682700 72 - 96509753 AATGGAGAG------------------------TC--ACCTGCAATCCTAAATTTTGAAAAC-AAAAC----------AGTCAAAGAGACACAAACATTCTATGAAAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179891 72 - 13098629 AATGGAGAG------------------------TC--ACCTGCAATCCTAAATTTTGAAAAC-AAAAC----------AGTCAAAGAGACACAAACATTCTATGAAAAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4139270 72 - 4483953 AATGGAGAG------------------------TC--ACCTGCAATCCTAAATTTTGAAAAC-AAAAC----------AGTCAAAGAGACACAAACATTCTATGAAAAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769376 72 + 33263144 AATGGAGAG------------------------TC--ACCTGCAATCCTAAATTTTGAAAAC-AAAAC----------AGTTAAAGAGACACAAACATTCTATGAAAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14050223 72 - 14338769 AATGGAGAG------------------------TC--ACCTGCAATCCTAAATTTTGAAAAC-AAAAC----------AGTCAAAGAGACACAAACATTCTATGAAAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 989319 72 + 1946073 AATGGAGAG------------------------TC--ACCTGCAATCCTAAATTTTGAAAAT-AAAAC----------AGTCAAAGAGACGCAAACATTCTATGAAAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015644 72 - 2117846 CATGGAGAG------------------------TC--ACCTGCAACCCTAAATTTTGAAAAT-AAAAA----------AGCCAAAGAGACACAAAAATGCTATGAAAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8927151 72 - 16357246 CATGGAGAG------------------------TC--ACTTGCAATCCTAAATTTTGAAAAT-AAAAA----------AGCCAAAGAGACACAAACATGCTATGAAAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1410872 70 - 1807191 CATGGAGAG------------------------TC--ACCTGCAATCCTAAATTTTGAAAAT-AAAAA----------AGCC--AGAGACACAAACATGCTATGAAAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 41746 72 - 704494 CATGGAGAG------------------------TC--ACCTGCAATCCTAAATTTTGAAAAT-AAAAA----------AGCCAAAGAGACACAAACATGCTATGAAAAA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36350092 101 - 42659167 AAAGAAGGGGTATCTAATAATGAGAGGATATCATC--ACCTGCAACCctaaa-----aaaat-aatgatcatctgtgccttcagtgagtcataatctgtttgtggaggg i otoGar3.GL873526 I 3 C 0 s mm10.chr15 82877195 68 + 104043685 AACAAAAAG------------------------GTAAAACCACACTAGCTAAAGCTGAAAGT-AAGAA----------A-CCAAAAAGCT-----TACTTTATGAAAAA i mm10.chr15 C 0 N 0 s canFam3.chr10 46158112 75 - 69331447 GATGAGAAG------------------GCATCATT--GCTTGCAACTTCAAGTTTTAACAAT-AAA------------AGCCAAAG-GACATAAATGTTTCCTGAAACA i canFam3.chr10 I 18 C 0 s dasNov3.JH570235 140127 72 + 1056298 -ACAGAGAT------------------------TA-GGTGTGCAATTCCAAATTTTAAAAAC-AAAAG----------AGCCAAAATGCCACAAATATTTCCTGAAAAA i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I a score=28971.000000 s hg38.chr22_GL383582v2_alt 146956 2 + 162811 TC s panTro5.chr22 28926504 2 + 37823149 TC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41201065 2 + 50109623 TC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3224270 2 + 4464012 TC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106717396 2 - 115148730 TC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84336406 2 + 92844088 TC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682772 2 - 96509753 TC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179963 2 - 13098629 TC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4139342 2 - 4483953 TC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769448 2 + 33263144 TC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14050295 2 - 14338769 TC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 989391 2 + 1946073 TC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015716 2 - 2117846 TC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8927223 2 - 16357246 TC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1410942 2 - 1807191 TC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 41818 2 - 704494 TC i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36350193 2 - 42659167 tc i otoGar3.GL873526 C 0 I 240 s canFam3.chr10 46158187 2 - 69331447 TC i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 140199 2 + 1056298 GC i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I a score=40885.000000 s hg38.chr22_GL383582v2_alt 146958 3 + 162811 AGC s panTro5.chr22 28926506 3 + 37823149 AGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41201067 3 + 50109623 AGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3224272 3 + 4464012 AGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106717398 3 - 115148730 AGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84336408 3 + 92844088 AGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682774 3 - 96509753 AGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179965 3 - 13098629 AGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4139344 3 - 4483953 AGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769450 3 + 33263144 AGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14050297 3 - 14338769 AGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 989393 3 + 1946073 AGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015718 3 - 2117846 AGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8927225 3 - 16357246 AGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1410944 3 - 1807191 AGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 41820 3 - 704494 AGC i aotNan1.NW_018512389v1 C 0 C 0 s canFam3.chr10 46158189 3 - 69331447 AGA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 140201 3 + 1056298 AGC i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36350195 240 - 42659167 I e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I a score=30614.000000 s hg38.chr22_GL383582v2_alt 146961 3 + 162811 CAc s panTro5.chr22 28926509 3 + 37823149 CAc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41201070 3 + 50109623 CAc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3224275 3 + 4464012 CAc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106717401 3 - 115148730 CAc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84336411 3 + 92844088 CAc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682777 3 - 96509753 CAc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179968 3 - 13098629 CAc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4139347 3 - 4483953 CAc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769453 3 + 33263144 CAc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14050300 3 - 14338769 CAc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 989396 3 + 1946073 CAc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015721 3 - 2117846 CAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8927228 3 - 16357246 CAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1410947 3 - 1807191 CAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 41823 3 - 704494 CAT i aotNan1.NW_018512389v1 C 0 C 0 s canFam3.chr10 46158192 3 - 69331447 TAC i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 140204 0 + 1056298 C e otoGar3.GL873526 36350195 240 - 42659167 I e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I a score=3204867.000000 s hg38.chr22_GL383582v2_alt 146964 346 + 162811 aagcataacattgcaggtattgtgggtctggttccagaccgtggcaataaagcgagtcacacaaattttctggttttccagcacatattaacttttatatgtgtacgctatacttcagtctactaagtgtgaaatggtattatgtctaaaagacaatgttcataccttaatttaaaaaatactttatcgtt-aaaaaatgctaacaatcatctgagccttcagggagtcctaatctttttgctgacggagggtcttgcctccatgttgatggctgctgactaattagggtggtggttgctgaa-ggctgaggtggctgtggcaaatttcttcaaataacacacccatg s panTro5.chr22 28926512 346 + 37823149 aagcataacattgcaggtattgtgggtttggttccagaccgcggcaataaagctagtcacacaaattttctggttttccagcacatattaacttttatatgtgtacactatacttcagtctactaagtgtgaaatggtattatgtctaaaagacaatgttcataccttaatttaaaaaatactttatcatt-aaaaaatgctaacaatcatctgagccttcagggagtcctaatctttttgctgatggagggtcttgcctccatgttgatggctgctgactaattagggtggtggttgctgaa-ggctgaggtggctgtggcaaatttcttcaaataacacaaccatg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41201073 346 + 50109623 aagcataacattgcaggtattgtgggtttggttccagaccgcggcaataaagctagtcacacaaattttctggttttccagcacatattaacttttatatgtgtacactatacttcagtctactaagtgtgaaatggtactatgtctaaaagacaatgttcataccttaatttaaaaaatactttatcgtt-aaaaaatgctaacaatcatctgagccttcagggagtcctaatctttttgctgatggagggtcttgcctccatgttgatggctgctgactaattagggtggtggttgctgaa-ggctgaggtggctgtggcaaatttcttcaaataacacaaccatg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3224278 337 + 4464012 aagcataacattgc---------gggtttggttccagaccgcggcaataaagcgagtcacacaaattttctggttttccagcacatattaacttttctatgtgtacactatacttcagtctactaagtgtgaaatggtattatgtctaaaagacaatgttcataccttaatttaaaaaatactttatcgtt-aaaaaatgctaacaatcatctgagccttcagggagtcctaatctttttgctgatggagggtcttgcctccatgttgatggctgctaactaattagggtggtggttgctgaa-ggctgaggtggctgtggcaaatttcttcaaataacacaaccatg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106717404 346 - 115148730 aagcataacattgcaggtattgtgggtttggttccagaccatggcaataaagcgagtcacacaaattttctggttttctagcacatattaacttttatatgtgtacactacacttcagtctactaagtgtgaaatggtattgtgtctaaaagacaatgtacctaccttaatttaaaaaatactttattgtt-aaaaaatgctaacagtcatctgaaccttcagggagtccttatctttttgctggtggagggtctcgcctccatgttgatggctgttgactaattagggtggtggctgctgaa-ggctgaggtggctgtggcaaattttttcaaataacacaacaatg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84336414 341 + 92844088 aagcataacattgcaggtattgtgggtttggttctagaccatggcaatgaagcgagtcacacaaattttctggttttccagcacatattaacttttatatgtttacactatacttcagtctac----tgtgaaatggcattatgtctaaaagacaatgtatataccttaatttaaaaaatactttattgtt-aaaaaatgctaacaatcatctcagccttcagggagtcctaatctttttgctgatagagggtcttgcctctatgttgatggctgctgactaattagggtggtggttgctgaa-ggctgaggtggctgtggc-aatttcttcaaataacacaacaatg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87682780 341 - 96509753 aagcataacattgcaggtattgtgggtttggttctagaccatggcaatgaagcgagtcacacaaattttctggttttccagcacatattaacttttatatgtttacactatacttcagtctac----tgtgaaatggcattatgtctaaaagacaatgtacataccttaatttaaaaaatactttattgtt-aaaaaatgctaacaatcatctcagccttcagggagtcctaatctttttgctgatagagggtcttgcctctatgttgatggctgctgactaattagggtggtggttgctgaa-ggctgaggtggctgtggc-aatttcttcaaataacacaacaatg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7179971 341 - 13098629 aagcataacattgcaggtattgtgggtttggttctagaccatggcaatgaagctagtcacacaaattttctggttttccagcacatattaacttttatatgtttacactatactttagtctac----tgtgaaatggcattatatctaaaagacaatgtacataccttaatttaaaaaatactttattgtt-aaaaaatgctaacaatcatctcagccttcagggaatcctaatctttttgctgatagagggtcttgcctctatgttgatggctgctgactaattagggtggtggttgctgaa-ggctgaggtggctgtggc-aatttcttcaaataacacaacaatg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4139350 341 - 4483953 aagcataacattgcaggtattgtgggtttggttctagaccatggcaatgaagcgagtcacacaaattttctggttttccagcacatattaacttttatatgtttacactatacttcagtctac----tgtgaaatggcattatgtctaaaagacaatgtacataccttaatttaaaaaatactttattgtt-aaaaaatgctaacaatcatctcagccttcagggagtcctaatctttttgctgatagagggtcttgcctctatgttgatggctgctgactaattagggtggtggttgctgaa-ggctgaggtggctgtggc-aatttcttcaaataacacaacaatg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769456 333 + 33263144 aagcataacactgcaggtattgtgggtttggttctagaccatggcaatgaagcgagtcacacaaattttctggttttccagcacatattaacttttatatgtttacacta-----cagtctac----tgtgaaatggcattatgtctaaaagacaatgtacgtaccttaatttaaaaaatactttattgtt-aaaaaatgctaccaatcatctcagccttcagggagtcctaatctttttgccgatagagggtcttgcctctatgttgatggctgctgac----tagggtggtggttgctgaagggctgaggtggctgtggc-aatttcttcaaataacacaacaatg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14050303 341 - 14338769 aagcataacattgcaggtattgtgggtttggttctagaccatggcaatgaagcgagtcacacaaattttctggttttccagcacatattaacttttatatgtttacactatacttcagtctac----tgtgaaatggcattatgtctaaaagacaatgtacataccttaatttaaaaaatactttattgtt-aaaaaatgctaacaatcatctcagccttcagggagtcctaatctttttgctgatagagggtcttgcctctatgttgatggctgctgactaattagggtggtggttgctgaa-ggctgaggtggctgtggc-aatttcttcaaataacacaacaatg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 989399 338 + 1946073 aagcataacattgcaggtattgtgggtttggttccagaccatggcaataaagcgagtcacacacattttctggttttccagcacatattaacttttataggtttacactatacttcagtctac----tgtgaaatggc---atgtctaaaagacaatgtacataacttaatttaaaaaatactttattgtt-aaaaaatgctaacaatcatctcagccttcagggagtcctaatctttttgctgatagagggtcttgcctctatgttgatggctgctgactaattagggtggtggttgctgaa-ggctgaggtggctgtggc-aatttcttcaaataacacaacaatg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2015724 329 - 2117846 aagcataaccttgcaagtattgtgggtttggttccagaccatcgcaatgcagcaagtcacacacattttctggttttccagtgcatgttaacttttatatgtttatacta----------tactaagtgtgaaatggcattatgtct-aaagacaacatacataacttaattttaaaaatactttattgtt-aaaaaatgctaacaatcatctgagccttcacagagtactaatctttttgctggtaga-agttatgcctccat-ttgatagctgctgactaattaaggtggtggttgctgaa-ggctgaggtggctgtggc-aatgtcttcaaataac---acaatg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8927231 326 - 16357246 aagcatagccttgcaggtattgtgggtttggttccagaccatcgcaatacagcaagtcacacaaattttctggttttccagtgcatatcaacttttatatgtttatacta----------tactaagtgtgaaatggcattatgtctaaaagacaacgtacataccttaatttaaaaaatact---ttgtt-aaaaaatgctaacaatcatctaagccttcagagagtactaatctttttgctggtaga-ggttatgcctccat-ttgatagct----actaattaaggtggtggttactgaa-ggctgaggtggctgtggc-aatttctccaaataacacaacaatg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1410950 334 - 1807191 aagcataaccttgcaggtattgtgggtttggttccagaccatcgcaatacagcaagtcacacaaattttctggttttccagtgcatatcaacttttatatgtttatacta----------tactaagtgtgaaatgtcattatgtctaaaagacaatgtacataccttaatttaaaaaattctttattgttaaaaaaatgctaataatcacctaagccttcagggagtactaatctttttgctggtaga-ggttatgccctcat-ttgatagctgataactaattagggtggtggttgccgaa-ggctgaggtggctgtggc-aatttcttcaaataacacaacaatg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 41826 328 - 704494 aagcataaccttgcaggtattgtgggtttggttccagactatcgcaatacagcaagtcacacaaatttcctggttttccagtgcatattaacttttatatgtt-----ta----------tactaagtgtgaaatggcattatgtctaaaagacaacttacataccttaatttaaaatatactttattgtt-aaaaaatgctaacaatcatctgagccttcagggagtactaatctttttgctggtaga-ggttatgcctccat-ttgatagctgctgactaattagggtgggggttgctgaa-ggctgaggtggctgtggc-aatttcttcaaacaatacaacaatg i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e otoGar3.GL873526 36350195 240 - 42659167 I e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I a score=1067451.000000 s hg38.chr22_GL383582v2_alt 147310 119 + 162811 aagtctgacgcatcg--actggc----tcttccttttctaagagat--ttttctatagcatgccaaactgtttgatagcattttacccacagtggaacttctttcaaaactgcagtcagttctcttc s panTro5.chr22 28926858 119 + 37823149 aagtctgacgcatcg--actggc----tcttccttttctaagagat--ttttctatagcatgccaaactgtttgatagcattttacccacagtagaacttctttcaaaactgcagtcagttctcttc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41201419 119 + 50109623 aagtctgatgcatcg--actggc----tcttccttttctaagagat--ttttctatagcatgccaaactgtttgatagcattttacccacagtagaacttctttcaaaactgcagtcagttctcttc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3224615 119 + 4464012 aagtctgatgcatcg--actggc----tcttccttttctaagagat--ttttctatagcatgccaaactgtttgatagcattttacccacagtagaacttctttcaaaactgcagtcagttctcttc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106717750 119 - 115148730 aagtctgatgcatca--actggc----tcttcctttcagaagagat--ttttctatagcatgccaaactgtttgatagcattttacgcacagtagaacttctttcaaaattgcagtcagttctcttc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84336755 121 + 92844088 aagtctgatgtatgg--actggc----tcttcctttcataaaagattcttttctatagcatgccaaactgtttgatagcattttacccacagtagaacttctttcaaaattgcagtcagttctcttc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87683121 121 - 96509753 aagtctgatgtatgg--actggc----tcttcctttcataaaagattcttttctatagcatgccaaactgtttgatagcattttacccacagtagaacttctttcaaaattgcagtcagttctcttc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7180312 121 - 13098629 aagtctgatgtatgg--actggc----tcttcctttcagaaaagattcttctctatagcatgccaaactgtttgatagcattttacccacagtagaacttctttcaaaattgcagtcagttctcttc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4139691 121 - 4483953 aagtctgatgcatgg--actggc----tcttcctttcataaaagattcttttctatagcatgccaaactgtttgatagcattttacccacagcagaacttctttcaaaattgcagtcagttctcttc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769789 121 + 33263144 aagtctgatgcatgg--accggc----tcttcctttcataaaagattcttttctatagcatgccaaactgtttgttagcattttacccacagtagaacttctttcaaaattgcagtcagttctcttc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14050644 118 - 14338769 aagtctgatgcatgg--actggc----tcttcctttcataaaagattcttttctatagcatgccaaactgtttgatagcattttacccacagcagaa---ctttcaaaattgcagtcagttctcttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 989737 121 + 1946073 aagtctgatgcatgg--actggc----tcttcctttcataaaatattattttctatagcatgccaaactgtttgatagcattttacccacagcagaacttctttcaaaattgcagtcagttctcttc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2016053 112 - 2117846 aag--tgctacatag--acttg---------cctttcgtaagagat--gtttctacagcataccatgctgcctgatagcattttgcccaaggtagaacttctttcataattggagtcagttctctca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8927557 112 - 16357246 aag--tgctacatag--actgg---------cctttcataagaggt--ttttctatagcatgccacgctgcctgatagcattttgcccaaagcagaacttctttcataattggagtcagttctctcc i saiBol1.JH378157 C 0 I 6763 s cebCap1.NW_016107750v1 1411284 112 - 1807191 aag--tgctatacag--actgg---------cctttcgtaagagat--ttttctatagcatgccacgctgcctgatagcattttgcccaaggtggaacttctttcataattggagtcagttctctca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 42154 112 - 704494 aag--tgccacatag--actgg---------actttcgtaagagat--gtttctatagcatgccacactgcctgatagcattttgcccaaggtagaacttctttcattattggagtcagttctctca i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36350435 123 - 42659167 aagtgtgaagaactgtacctggccAAGttttcctttcttgaaagat--ttttccgtagcatgtgatgttg--tgatgaccttttacccacagtagaacttctttcaaaactggagttaattctctca i otoGar3.GL873526 I 240 C 0 e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I a score=4258292.000000 s hg38.chr22_GL383582v2_alt 147429 465 + 162811 aaccccgccactgcttaatcaactacgtttatgtaatattctaaatctttcattggcatttcaacaatgttcacag-catcttcatcaggagtagattccatctcaataaatcactttctttgctcatccataagcagcaactcctcatctgttcaagttttatcatgagattacagcaatccagtcacatctccaggctccacttttaattcgagttctcttgctatttctaccacatctgcagt--tcctgcctccactgaagtcctgaaccc--ctcaaagtcatccat--gagggctggaatcatc----ttccaaac-tcctgttcatg------tactgacctcctcccatgaatcacaaatgttcttaatggcatttagaatggtaaatcctttccgaaagg-ttttcaattcactctgcccagacccactagaggaattattatgtatagcagcta-gagccttatgaaacatattt s panTro5.chr22 28926977 465 + 37823149 aaccccgccactgcttaatcaactacgtttatgtaatattctaaatctttcattggcatttcaacaatgttcacag-catcttcatcaggagtagattccatctcaataaatcactttctttgctcatccataagaagcaactcctcatctgttcaagttttatcatgagattacagcaatccagtcacatcttcaggctccacttttaattcgagttctcttgctatttctaccacatctgcagt--tcctgcgtccactgaagtcctgaaccc--ctcaaagtcatccat--gagggctggaatcatc----ttccaaac-tcctgttcatg------tactgacctcctcccatgaatcacaaatgttcttaatggcatttagaatggtaaatcctttcccaaagg-ttttcaattcactctgcccagacccactacaggaattattatgtatagcagcta-gagccttatgaaacatattt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41201538 465 + 50109623 aaccccgccactgcttaatcaactacgtttatgtaatattctaaatctttcattggcatttcaacaatgttcacag-catcttcatcaggagtagattccatctcaataaatcactttctttgctcatccataagaagcaactcctcatctgttcaagttttatcatgagattacagcaatccagtcacatcttcaggctccacttttaattcgagttctcttgctatttctaccacatctgcagt--tcctgcctccactgaagtcctgaaccc--ctcaaagtcatccat--gagggctggaatcatc----ttccaaac-tcctgttcatg------tactgacctcctcccatgaatcacaaatgttcttaatggcatttagaatggtaaatcctttcccaaagg-ttttcaattcactctgcccagacccactagaggaattattatgtatagcagcta-gagccttatgaaacatattt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3224734 465 + 4464012 aaccccgccactgcttaatcaactacgtttatgtaatattctaaatctttcattggcatttcaacaatgttcacag-catcttcatcaggagtagattccatctcaataaatcactttctttgctcatccataagaagcaactcctcttctgttcaagttttatcatgagattacagcaatccagtcacatcttcaggctccacttttaattcgagttctcttgctatttctaccacatctgcagt--tcctgcctccactgaagtcctgaaccc--ctcgaagtcatccat--gagggctggaatcatc----ttccacac-tcctgttcatg------tactgacctcctcccatgaatcacaaatgttcttaatggcatttagtatggtaaatcctttctgaaagg-ttttcaattcactctgcccagacccactagaggaattattatgtatagcagcta-gagccttatgaaacatattt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106717869 468 - 115148730 aaccccgccactgcttaatcaactacatttatgtaatattctaaatctttcattggcatttcaacaatgttcacag-catcttcatcaggagtagattccatctcaataaatcactttctttgctcatccataagaagcaact-ctcatctgttcaagttttatcgtgagattacagcaatccagttacatcttcaggctccacttttaattcgagttctcttgctatttctaccacatctgcagt--tcctgcctccactgaagtcctgaaccc--ctcaaagtcatccat--gaggactggaatcatcatcttccaaaac-ttctgttcatg------tactgacctcctcccatgaatcacaaatgttcttaatggcatttagaatggtaaatcctttccaaaagg-ttttcaattcactctgcccagacccactagaggaattattatgtatagcaccta-gagccttatgaaacatattt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84336876 462 + 92844088 aaccctgccactgctttatcaactacgtttatgtaacattctaaatccttcattggcatttcaacaatgttcacag-catcttcaccaggagtagattccatctcaataaatca----ctttggtcatccataagaagcaactcctcatctgttcaagttttatcatgaggttacagcaatccagtcacatcttcaggctccactcttaattcgagttctcttgctatttctaccacatctccagttctcctgcctccactaaagtcctgaaccc--ctcaaagttattcgt--gagggctggaatcatc----ttccaaacttccagttcatg------tactgacctcctcccatg--ttcttaatgttcttaatggcatttagaatggtaaatcctttccaaaagg-ttttcaattcattctgcccagaccccctaaaggaattattatgtagagcagcca-cagccttatgaaacatattt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87683242 462 - 96509753 aaccctgccactgctttatcaactacgtttatgtaacattctaaatccttcattggcatttcaacaatgttcacag-catcttcaccaggagtagattccatctcaataaatca----ctttggtcatccataagaagcaactcctcatctgttcaagttttatcatgaggttacagcaatccagtcacatcttcaggctccactcttaattcgagttctcttgctatttctaccacatctccagttctcctgcctccactaaagtcctgaaccc--ctcaaagttattcgt--gagggctggaatcatc----ttccaaacttccagttcatg------tactgacctcctcccatg--ttcttaatgttcttaatggcatttagaatggtaaatcctttccaaaagg-ttttcaattcattctgcccagaccccctaaaggaattattatgtagagcagcca-cagccttatgaaacatattt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7180433 460 - 13098629 aaccctgccactgctttatcaactacgtttatgtaacattctaaatccttcattggcatttcaacaatgttcacag-catcttcaccaggagtagattccatctcaataaatca----ctttggtcatccataagaagcaactcctcatctgttcaagttttatcatgaggttacagcaatccagtcacatcttcaggctccactcttaattcgagttctcttgctatttctaccacatctccagt--tcctgcctccactaaagtcctgaaccc--ctcaaagttattcgt--gagggctggaatcatc----ttccaaacttccagttcatg------tactgacctcctcccatg--ttcttaatgttcttaatggcatttagaatggtaaatcctttccaaaagg-ttttcaattcattctgcccagaacccctaaaggaattattatgtagagcagcca-cagccttacgaaacatattt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4139812 459 - 4483953 aactctgccactgctttatcaactacatttatgtaacattctaaatccttcattggcatgtcaacaatgttcacag-catcttcaccaggagtagattccatctcaataaatca----ctttggtcatccataagaagcaactcctcatctgttcaagttttatcatgaggttacagcaatccagtcacatcttcaggctccactcttaattcgagttctcttgctatttctaccacatctccagt--tcctgcctccactaaagtcctgaaccc--ctcaaagttattcgt--gagggctggaatcatc----ttccaaac-tcctgttcatg------tactgacctcctcccatg--ttcttaatgttcttaatggcatttagaatggtaaatcctttccaaaagg-ttttcaattcattctgcccagaccccctaaaggaattattatgtagagcaacca-cagccttatgaaacatattt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24769910 461 + 33263144 aaccctgccactgctttatcaactacatttatgtaacattctaaatctttcattggcatttcaacaatgttcacag-catcttcaccaggagtagattccatctcaataaatca----ctttggtcatccataagaagcaactcctcatctgttcaagttttatcatgaggttacagcaatccagtcacatcttcaggctccactcttaattcgagttctcttgctatttctaccacatctccagt--tcctgcctccactaaagtcctgaaccc--ctcaaagttatttgt--gagggctggaatcatc----ttccaaac-tcctgttcatg------tactgacctcctcccatgaatcacaaatgttcttaatggcatttagaatggtaaatcctttccaaaagg-ttttcaattcattctgcccagaccccctaaaggaattattatgtagagcagcca-cagccttatgaaacatattt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14050762 459 - 14338769 aactctgccactgctttatcaactacatttatgtaacattctaaatccttcattggcatttcaacaatgttcacag-catcttcaccaggagtagattctatctcaataaatca----ctttggtcatccataagaagcaactcctcatctgttcaagttttatcatgaggttacagcaatccagtcacatcttcaggctccactcttaattcgagttctcttgctatttctaccacatctccagt--tcctgcctccactaaagtcctgaaccc--ctcaaagttatttgt--gagggctggaatcatc----ttccaaac-tcctgttcatg------tactgacctcctcccatg--ttcttaatgttcttaatggcatttagaatggtaaatcctttccaaaagg-ttttcaattcattctgcccagaccccctaaaggaattattatgtagagcagcca-cagccttatgaaacatattt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 989858 461 + 1946073 aaccctgccactgctttatcaactacgtttatgtaacattctaaatccttcactggcatttcaacaatgttcactg-catcttcaccaggagtagattccatctcaataaatca----ctttggtcatccataagaagcaactcctcatttgtccaagttttatcatgagattacagcaatccagtcacatctccaggctccactattaattcgagttctcttgctatttctagcacatctccagt--tcccgcctccactaaagtcctgaaccc--ctcaaagttattcgt--gagggctagaatcatc----ttccaaac-tcctgttcatg------tactgacctcctcccatgaatcacaaatgttcttaatggcatttagaatggtaaatcctttccaaaccg-ttttcaattcattctgcccagaccccctaaaggaattattacgtagagcagcca-cagccttatgaaacaaattt i colAng1.NW_012115588v1 C 0 I 3377 s calJac3.chrUn_GL286373 2016165 459 - 2117846 aaccctcccgctgctttatcaactatgtttatgtaatattctaaatccttcattggcatttcaacagtgttcacag-catcttcatcaggaatagattccatctcaataaatcaccttctttgctcatccataagaagcaactcctcatctgttcaagttttatc---agattaccacaatccagtcacatcttcaggctctactttt-----gagttttcttgctatgtctaccacatctgcatt--tcctgcctacactcaagtcttgaacccctctcaaagtcatccag--gagggctggaatcgtcttc-ttccaaac-tcctgttc-tg------tactgacctcctcccatgaatcacagatgttcttaacggcatttagaatggtaaatcctttccaaaaggtttttcaactcactctgtccagacccactaggggaattatc---tacagtagctg-gagacttatgaaatatattt i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1411396 463 - 1807191 aaccctgccactgctttatcaactacgttcatgtaatattctaaatccttcattggcatttcaacaatgttcacagccatcttcaccaggagtagattctatctcaataaatcgccttctttgctcatccataagaagcaattcctcatctgttcaagttttatcgtgagattacagcaatccagtcacatcttcaggctctactttt-----gagtttttttgctatgtctaccacatctgaatt--tcctgcctacattcaagtcttgaacacctctcaaagtcatccag--gagggctggaatcatcttc-ttccaaac-tcctgttcttg------tactgacctcctcccatgaatcacaaatattcttaatggcatttagaatggtaaatcctttccaaaagg-ttttcaactcactctgtccagacccactaggggaattatc---tatagcagctg-gagccttatgaagtatatat i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 42266 462 - 704494 aaccctgccactgctttatcaactacgtttatgtaatattctaaatccttcactggcatttcaacaatgttcacag-tatcttcaccgggagtagattccatctcaataaatcaccttctttgcttatccataagaagcaactcctcatctgttcaagttttatcctgagattacagcaatccagtcacatcttcaggctccactttt-----gagttttcttgctatgtctaccacatctgcatt--tcctgcctacactcaagtcttgagcccctctcaaagtcatccag--gaggcctggaatcatcctc-ttccaaac-tcctgttcttg------tactgatctcctcccatgaatcacaaatgttcttagtggtatttcgaatggtaaatcctttccaaaagg-ttttcaattcactctgtccagacccagtaggggaattatc---tatagcagctg-gagccttatgaaatatattt i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36350558 472 - 42659167 aactttgccactgctttatcaattcagtttatataatgttctaaatcctttattgtcatttcaacaatgctcacag-tatctttgctaggagtagatgccatgtcaagaaaccagtttctctgctcatccataacagacaacccctcatctattcaagttttatcatgagattgcaggagtttggtcacatcttcagactccatttcctattctggttctcttgcta---cagtaacatctgtagg--tattgactacactgaaccctttaatc---ctcaaagtcctccacgagagggttagaatcaacctc-ttccaaac-tcatgttaatgttaatattttgacttcctcccatgaatcatgaatgttcttaatggcatttagaatgatgaatcctttcc-agaga-ttttcaatttactttgcccagatccacttaaggaatcactatctatggcaactataagcctcatgaaaggcattt i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=44806.000000 s hg38.chr22_GL383582v2_alt 147894 8 + 162811 ctta---aata s panTro5.chr22 28927442 8 + 37823149 ctta---aata i panTro5.chr22 C 0 C 0 s panPan2.chr22 41202003 8 + 50109623 ctta---aata i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3225199 8 + 4464012 ctta---aata i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106718337 8 - 115148730 ctta---aata i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84337338 11 + 92844088 cttaaataata i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87683704 11 - 96509753 cttaaataata i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7180893 11 - 13098629 cttaaataata i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4140271 11 - 4483953 cttaaataata i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24770371 11 + 33263144 cttaaataata i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14051221 11 - 14338769 cttaaataata i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2016624 11 - 2117846 tttaaataata i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1411859 11 - 1807191 tttaaataata i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 42728 11 - 704494 tttaagtaata i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36351030 8 - 42659167 ctttagta--- i otoGar3.GL873526 C 0 I 290 e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 990319 3377 + 1946073 I a score=7303784.000000 s hg38.chr22_GL383582v2_alt 147902 931 + 162811 agacttgaaaatcaaaatgattccttgatccaggggctgcagaatagatgttgt-----------------------------------------------gttagcaagcatgaaaacaacatttatctccttatacatttccatcagagctcttaggtgaccaggt---atactgtcaa---gaagta---atattctgaaagaaatcttt--tgagtagtaggtctcaacagtggccttaaaatattcattaaaccattctgtaaacagatgtgctgtcatctaggttttgttgatccactgac-agagcacaggcagagtagatttagcataa-atttatgggccctagaattattagaatggtaaatgagcactggcatcaacctaaattcaccagctacaccagctcctaat--aacagtcagcctgtcttttgaagccaggcactgacttctcc---taattatggaagtcctagatggcatctt-ttctgacataagg----------ct-acac-tgaatatctg----ttcaatatagccaccttcatcagtga--tcttggctacatcttctagataacttgctgcagcttctacattagcact---tgcttcaacttgcattttaatgtt---acagagatggttt-----caagaactttaggaaccaatctgtgctagcttcaaacttcacttctgcagcttcttacttttttcagccttcacagaagtg-aaaagag-------aaagtcttgctctgggattaggctctggcttaagggaatgttgcggctggtt-gattttccatctgagtcactaaaac-ttt-tccatatcagcaata-agctgtttcgttttcttctcattcatgtgttcactggagttgtacttttaactttcttcaagaaccttttct-tgcattcataacttggc--cacgtttggtgcaataggcctagtattcagcctatcttggcttttgacatgccttcctcactaaac--catcatttctagcttctgatttaaa s panTro5.chr22 28927450 931 + 37823149 agacttgaaaatcaaaatgattccttgatccaggggctacagaatagatgttgt-----------------------------------------------gttagcaagcatgaaaacaacatttatctccttatacatttccatcagagctcttaggtgaccaggt---atactgtcaa---gaagta---atattctgaaagaaatcttt--tgagtagtaggtctcaacagtggccttaaaatattcattaaaccattctgtaaacagatgtgctgtcatctaggttttgttgatccactgac-agagcacaggcagagtagatttagcataa-atttatgggccctagaattattagaatggtaaatgagcaccggcatcaacctaaattcaccagctacaccagctcctaat--aacagtcagcctgtcttttgaagccaggcactgacttctcc---taattatggaagt-ctagatggcatctt-ttctgacataagg----------ct-acac-tgaatatctg----ttcaatatagccaccttcatcagtga--tcttggctacatcttctagataacttgctgcagcttctacattagcact---tgcttcaacttgcattttaacgtt---acagagatggttt-----caagaacttcaggaaccaatctgtgctagcttcaaacttcacttctgcagcttcttacttttttcagccttcacagaagtg-aaaagac-------aaagtcttgctccgggattaggctctggcttaagggaatgttgcggctggat-gattttccatctgagtcactaaaac-tttatccatatcagcaata-agctgtttcgttttcttctcattcatgtgttcactggagttgtacttttaattttcttcaagaaccttttct-tgcattcataacttggc--cacgtttggtgcaataggcctagtattcagcctatcttggcttttgacacgccttcctcactaaac--aatcatttctagcttctgatttaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41202011 931 + 50109623 agacttgaaaatcaaaatgattccttgatccaggggctacagaatagatgttgt-----------------------------------------------gttagcaagcatgaaaacaacatttatctccttatacatttccatcagagctcttaggtgaccaggt---atactgtcaa---gaagta---atattctgaaagaaatcttt--tgagtagtaggtctcaacagtggccttaaaatattcattaaaccattctgtaaacagatgtgctgtcatctaggttttgttgatccactgac-agagcacaggcagagtagatttagcataa-atttatgggccctagaattattagaatggtaaatgagcactggcatcaacctaaattcaccagctacaccagctcctaat--aacagtcagcctgtcttttgaagccaggcactgacttctcc---taattatggaagt-ctagatggcatctt-ttctgacataagg----------ct-acac-tgaatatctg----ttcaatatagccaccttcatcagtga--tcttggctacatcttctagataacttgctgcagcttctacattagcact---tgcttcaacttgcattttaacgtt---acagagatggttt-----caagaacttcgggaaccaatctgtgctagcttcaaacttcacttctgcagcttcttacttttttcagccttcacagaagtg-aaaagac-------aaagtcttgctctgggattaggctctggcttaagggaatgttgcggctggtt-gattttccatctgagtcactaaaac-tttatccatatcagcaata-agctgtttcgttttcttctcattcatgtgttcactggagttgtacttttaattttcttcaagaaccttttct-tgcattcataacttggc--cacgtttggtgcaataggcctagtattcagcctatcttggcttttgacatgccttcctcactaaac--aatcatttctagcttctgatttaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3225207 929 + 4464012 agacttgaaaatcaaaatgattccttgatccaggggctgcagaatagatgttgt-----------------------------------------------gttagcaagcatgaa---aacatttatctccttatacatttccatcagagctcttaggtgaccaggt---atactgtcaa---gaagta---atattctgaaagaaatcttt--tgagtagtaggtctcaacagtggccttaaaatattcactaaaccattctgtaaacagatgtgctgtcatctaggttttgttgatccactgac-agagcataggcagagtagatttagcataa-atttatgggccctagaattattagaatggtaaatgagcactggcatcaacctaaattcaccagctacaccagctcctaat--aacagtcagcctgtcttttgaagccaggcactgacttctcc---taattatggaagtcctagatggcatctt-ttctgacataagg----------ct-acac-tgaatatctg----ttcaatatagccaccttcatcagtga--tcttggctacatcttctagataacttgctgcagcttctacattagcact---tgcttcaacttgcattttaatgtt---acagagatggttt-----caagaacttcaggaaccaatctgtgctagcttcaaacttcacttctgcagcttcttacttttttcagccttcacagaagtg-aaaagag-------aaagtcttgctctgggattaggctctggcttaagggaatgttgcggctggtt-gattttccatctgagtcactaaaac-tttatccatatcagcaata-agctgtttcgttttcttctcattcatgtgttcactggagttgtacttttaattttcttcaagaaccttttct-tgcattcataacttggc--cacatttggtgcaacaggcctagtattcagcctatcttggcttttgacatgccttcctcactaaac--aatcatttctagcttctgatttaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106718345 941 - 115148730 agacttgaaagtcaaaatgattcctggatccaggggctgcagaatagatgctgt-----------------------------------------------gttagcaagcatgaaaacaacatttatctccttgtacatttccatcagagctcttaggtgaccaggt---gcactgtcaa---gaagta---atattttgaaagaaatcttttctgagtagtagatctcaacagtggccttaaaatattcattaaaccatgctat--acagatgtgctgtcatctaggttttgttgatccactgac-agagcacaggcagagtagatttagcataa-atttatgggccctagaattattagaatggtaaatgagcaccggcatcaacctaaattcaccagctacaccagctcctaat--aacagtcagcctgtcttttgaagccaggcactgatttatcc---taattatgcaagtcctaaatggcatcttcttctgacataagg----------ct-acac-tgaatatctg----ttcaatatagccaccttcatcagtaa--tcttggctacatcttctagataacttgctgcagcttctacattagcacttgctgcttcaacttgcattttaatgtt---acagagatggctt-----caagaacttcaggaatcaatctgtgctagcttcgaacttcacttctgcagcttcttacctttttcagccttcacagaagtg-aaaagag-----ttaaattcttgctctgggattatgctctggcttaagggaatgttgtggctggttggattttctatgtgggtcactaaaac-tttgtccatatcagcaata-agctgtttcgttttcttctcattcatgtgttcactggagttgtacttttaattttcttcaagaaccttttct-tgcattcataacttggctacatgtttggtacaagaggcctagtattcagcctatcctggcttttgacatgccttcctcactaaac--aatcatttctagcttctgatttaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84337349 946 + 92844088 agacttgaaagtcaaaatgactccttgatccaggggctgcagaatagatgttat-----------------------------------------------gttagcaagcatgcaaacaaaattaatctccttgtacatttccatcagagttcttaggtgaccaggt---gcactgtcaa---gaagta---atattttgaaataaatcttttctgagtagtaggtctcaacaatggccttaaaatattcattacaccatgctgtaaacagatgcgctgtcatctaggttttgttgatccactgac-agagcacaggcagagtagatttaatataa-atttatgggccctagaattactggaatggtaaatgagcaccggcatcaacctaaattcaccagctataccagcttctaat-caagagtcagcctgtcttttgaaactaggcattgacttctcc---taactatggaagtcctagatggcatcttcttctgacataagg----------ctgacataagagtatctg----ttcaatatagccaccttcatcagtga--tcttggctacatcttctatataacttgctgcagcttgtacattagcacttgctgcttcgacttgcattttaatgtt---atagagagggcat-----caagaacttcaggaaccaatctgtgctggcttcaaactttccttctgcagcttcttacctctttcagccttcacagaagtgaaaaagag-----ttaaagtcttgctctgggattaggctctggcttaagggaatattgtggctagttggattttccatctgggtcactaaaac-tttatccatatcagcaata-agttgtttcattttcttctcattcatgtgttcactggagtcatattttcaattttcttcaagaacctttcct-tgcattcacaacttggctatgtgtttggtgcaagaggcctagtatacagcctctcttggcttctgacatgccttcctcactaagc--aatcatttatagcttctgattt-aa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87683715 946 - 96509753 agacttgaaagtcaaaatgactccttgatccaggggctgcagaatagatgttgt-----------------------------------------------gttagcaagcatgcaaacaaaattaatctccttgtacatttccatcagagttcttaggtgaccaggt---gcactgtcaa---gaagta---atattttgaaagaaatcttttctgagtagtaggtctcaacaatggccttaaaatattcattacaccatgctgtaaacagatgcgctgtcatctaggttttgttgatccactgac-agagcacaggcagagtagatttaatataa-atttatgggccctagaattactggaatggtaaatgagcaccggcatcaacctaaattcaccagctataccagcttctaat-caagagtcagcctgtcttttgaaaccaggcgttgacttctcc---taactatggaagtcctagatggcatcttcttctgacataagg----------ctgacataagagtatctg----ttcaatatagccaccttcatcagtga--tcttggctacatcttctatataacttgctgcagcttgtacattagcacttgctgcttcgacttgcattttaatgtt---atagagagggcat-----caagaacttcaggaaccaatctgtgctggcttcaaactttccttctgcagcttcttacctctttcagccttcacagaagtgaaaaagag-----ttaaagtcttgctctgggattaggctctggcttaagggaatattgtggctagttggattttccatctgggtcactaaaac-tttatccatatcagcaata-agttgtttcattttcttctcattcatgtgttcactggagtcatattttcaattttcttcaagaacctttcct-tgcattcacaacttggctatgtgtttggtgcaagaggcctagtattcagcctcccttggcttctgacatgccttcctcactaagc--aatcatttatagcttctgattt-aa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7180904 946 - 13098629 agacttgaaagtcaaaatgactccttgatccaggggctgcagaatagatgttgt-----------------------------------------------gttagcaagcatgcaaacaaaattaatctccttgtacatttccatcagagttcttaggtgaccagat---gcactgtcaa---gaagta---acattttgaaagaaatcttttctgagtagtaggtctcaacaatggccttaaaatattcattacaccatgctgtaaacagatgcgctgtcatctaggttttgttgatccactgac-agagcacaggcagagtagatttaatataa-atttatgggccctagaattactggaatggtaaatgagcaccggcatcaacctaaattcaccagctataccagcttctaat-caagagtcagcctgtcttttgaaaccaggcattgacttctcc---taactatggaagtcctagatggcatcatcttctgacataagg----------ctgacataagaatatctg----ttcaatatagccaccttcatcagtga--tcttggctacatcttctatataacttgctgcagcttgtacattagcacttgctgcttcgacttgcattttaatgtt---atagagagggcat-----caagaacttcaggaaccaatctgtgctggcttcaaactttccttctgcagcttcttacctctttcagccttcacagaagtgaaaaagag-----ttaaagtcttgctctgggattaggctctggcttaagggaatattgtggctagttggattttccatctgggtcactaaaac-tttatccatatcagcaata-agttgtttcattttcttctcattcatgtgttcactggagtcatattttcaattttcttcaagaacctttcct-tgcattcacaacttggctatgtgtttggtgcaagaggcctagtattcagcctctcttggcttctgacatgccttcctcactaagc--aatcatttatagcttctgattt-aa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4140282 946 - 4483953 agacttgaaagtcaaaatgactccttgatccaggggctgcagaatagatgttgt-----------------------------------------------gttagcaagcatgcaaacaaaattaatctccttgtacatttccatcagagttcttaggtgaccaggt---gcactgtcaa---gaagta---atattttgaaagaaatcttttctgagtagtaggtctcaacagtggccttaaaatattcattacaccatgctgtaaacagatgcgctgtcatctaggttttgttgatccactgac-agagcacaggcagagtagatttagcataa-atttatgggccctagaattactggaatggtaaatgagcaccagcatcaacctaaattcaccagctataccagcttctaat-caagagtcagcctgtcttttgaagccaggcattgacttctcc---taactatagaagtcctagatggcatcttcttctgacataagg----------ctgacataagaatatctg----ttcaatatagccaccttcaccagtga--tcttggctacatcttctatataacttgctgcagcttgtacattaacacttgctgcctcgacttgcattttaatgtt---atagagagggcat-----caagaacttcaggaaccaatctgtgctggcttcaaactttccttctgcagcttcttacctctttcagccttcacagaagtgaaaaagag-----ttaaagtcttgctctgggattaggctctggcttaagggaatattgtggctagttggattttccatctgggtcactaaaac-tttatccatatcagcaata-agttgtttcattttcttctcattcatgtgttcactggagtcatattttcaattttcttcaagaacctttcct-tgcattcacaacttggctatgtgtttggtgcaagaggcctagtattcagcctctcttggcttctgacttgccttcctcactaagc--aatcatttatagcttctgattt-aa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24770382 943 + 33263144 agacttgaaagtcaaaatgactccttgatccaggggctgcagaatagatgttgt-----------------------------------------------gttagtaagcatgcaaacaaaattaatctccttgtacatttccatcagagttcttaggtgaccaggt---gcactgtcaa---gaagta---atattttgaaagaaatcctttctgagtagtaggtctcaacagtggccttaaaatattcattacaccatgctgtaaacagatgcgctgtcatctaggttttgttgatccactgac-agagcacaggcagagtagatttagcataa-atttatgggccctagaattactggaatggtaaatgagcactggcatcaacctaaattcaccagctataccagcttctaat-caagagtcagcctgtcttttgaagccaggcattgacttctcc---taactatggaagtcctagatggca---tcttctgacataagg----------ctgacataagaatatctg----ttcaatatagccaccttcatcagtga--tcttggctacatcttctatataacttgctgcagcttgtacattagcacttgctgcttcgacttgcattttaatgtt---atagagagggctt-----caagaacttcaggaaccaatctgtgctggcttcaaactttccttctgcagcttcttacctctttcagccttcacagaagtgaaaaagag-----ttaaagtcttgctctgggattaggctctggcttaagtggatattgtggctagttcgattttccatctgggtcactaaaac-tttatccgtatcagcaata-agttgtttcattttcttctcattcatgtgttcactggagtcatattttcaattttcttcaagaacctttcct-tgcattcacaacttggctatgtgtttggtgcaagaggcctagtattcagcctctcttggcttctgacatgccttcctcactaagc--aatcatttatagcttctgattt-aa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14051232 946 - 14338769 agacttgaaagtcaaaatgactccttgatccaggggctgcagaatagatgttgt-----------------------------------------------gttagcaagcatgcaaacaaaattaatctccttgtacatttccatcagagttcttaggtgaccaggt---acactgtcaa---gaagta---atattttgaaagaaatcttttccgagtagtaggtctcaacagtggccttaaaatattcattacaccatgctgtaaacagatgcgctgtcatctaggttttgttgatccactgac-agagcacaggcagagtagatttagcataa-atttatgggccctagaattactggaatggtaaatgagcaccggcatcaacctaaattcaccagctataccagcttctaat-caagagtcagcctgtcttttgaagccaggcattgacttctcc---taactatggaagtcctagatggcatcttcttctgacataagg----------ctgacataagaatatctg----ttcaatatagccaccttcatcagtga--tcttggctacatcttctatataacttgctgcagcttgtacattagcacttgttgcttcgacttgcattttaatgtt---atagagagggcat-----caagaacttcaggaaccaatctgtgctggcttcaaactttccttctgcagcttcttacctctttcagccttcacagaagtgaaaaagag-----ttaaagtcttgctctgggattaggctctggcttaagggaatattgtggctagctggattttccatctgggtcactaaaac-tttatccatatcagcaata-agttgtttcattttcttctcattcatgtgttcactggagtcatattttcaattttcttcaagaacctttcct-tgcattcacaacttggctatgtgtttggtgcaagaggcctagtattcagcctctcttggcttctgacatgccttcctcactaagc--aatcatttatagcttctgattt-aa i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2016635 946 - 2117846 aaacttgaaagtcaaaatgattccttgatccaggggctgcagaatagatgttgt-----------------------------------------------gttatcaagtatgaaaccaccactaatctccttgtacatatccatcagag---tcaggtgaccagatgtagcactgtcaatacggaata---atattttgaaagatacctaatctgagtagtaggtctcaacagtgggcttaaaatattcattaaaccatgctgtaaacagatgtactttcgtctaggttttgctgatccactgag-agagcataggcagagtagatttaatataa-atctgtgggtcctagaatttttttgtaggtaaatgagcactgtcatcaacttaaagtcacaagctgcattagctcctaataagagagtcagtctgtcttttgaagccaggcatccacttttcc---taactatgaaagtcctagatggcatcttcttctgacctaagg----------tt-acat-tgacagtatg----tttaatacagccaccttcatcagtga--tcttggctacatcttctgggtaacttgctgcagcttctgcattagcagttgctgcttcgacttgcactttaatgttaaaaaagagatggctt-----caagaacttcatgaaccaatctgtgctagcttcaaactttacttctgcagcttcttaactctttcagccttcacagaagtg-aaaagag-----ttaaagtcttgctct-ggattaggctctggcttaagggaatgttgtggctggttttattttccatctgggtcactaaaac-tttatctgtaacagcaaca-agctgtttcgttttctt---attcatgtcctcactggagtcgtacttttaattttctttaagaacctttcct-tgcattcataacttggctacgtgtttggggcaaaaggcctagttttcagcctatcttggtttttgacatgtcttcctcactaaac--aatcatttcgagcttctgattt-aa i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1411870 950 - 1807191 agacttgaaagtcaaaatgattccctgatccaggggctgcagaatagatgttgt-----------------------------------------------gttagcaagtatgaaatcaccactaatctccttgtacatttccatcagagctcttaggtgaccagatgtagcactgtcaatacggagca---atattttgaaacatatctaatctgagtagtcggtctcaacagtgggcttaaaatattcattaaaccatgctgtaaacagatgtgctgtcatctaggttttgttgatccactgaa-agagcacaggcagaatagatttaacataa-atttatgggccctaaaattttttgtatggtaaatgagcactgtcatcaacttaaattcacaagctgcaccagctcctaataagagagtcagtctgtattttgaagccagacatccacttttcc---taactatgaaagtcctagatggcatcttcttctgacctaagg----------tt-acac-taacaatctg----tttaatacagccaccttcatcagtga--tcttggctacatcttctgggttacttgctgcagcttctacattagcagttgctgtttcaacttgcactttaatgttaaaaaagagatggctt-----caagaacttcatgaaccaatctgtgctagcttcaaactttacttctgcaacttattacctttttcagccttcacagaagag-aaaagag-----tgaaagtcttgctct-ggattaggctctggcttaagggaatgttgtggctggttttattttccatctgggtcactaaaacttttatctgtaacagcaata-agctgtttcgttttctt---attcatgtgctcactggagttgtacttttaattttcttcaagaacctttcct-tgcatttataacttggctacatgtttggtgcaaaaggcctagttttcagcctatcttggctttcgacatgtcttcctcactaaac--aatcatttcgagcttctgattt-aa i cebCap1.NW_016107750v1 C 0 I 213 s aotNan1.NW_018512389v1 42739 951 - 704494 agacttgaaagtcaaaatgattccttgatccaggggctgcagaatagatgttgt-----------------------------------------------gttagcaagtatgaaaccaccactaat---tttgtatatttccatcacagctcttaggtgaccagatgtagcactgtcaatagggagta---atattttgaaagatacctaatctaagtagtaggtctcaacagtgggcttaaaatattcattaaaccatgctataaacagatgtgctgtcatctaggttttgttgatccactgag-agagcacaggcagagtagatttaacataa-atttatgggtcctagaattttttgtatggtaaatgagcactgttatcaacttaaattcacaagctgcaccagctcctaataaaagagtcagtctgtcttttgaagccaggcatccactttccc---taactatgaaagtcctagatggcatcttcttctgacctaagg----------tt-acac-tgacaatctg----tttaatatagccaccttcatcagtga--tcttggctacatcttctgggtaacttgctgcagcttctgcattagcagttgctgcttcaacttgcactttaatgttaaaaaagagatggctt-----caagaacttcatgaaccaatctgtgctagcttcaaactttacttctgcagcttcttacctctttcagccttcacagaagtg-aagagagttaaattaaagtcttgctct-ggattaggctctggcttaagggaatgttgtggctggttttattttccatctgggtcactaaaac-tttatctgtaacagcaata-agctgtttcgttttctt---attcatgtgctcactggagttgtacttttaattttcttcaagaacctttcct-tgcattcataactttgctatgtgtttggtgcaaaaggtctagttttcagcctatcttggcttttgacatgtcttcctcactaaac--aatcatttcgagcttctgattt-aa i aotNan1.NW_018512389v1 C 0 I 213 s otoGar3.GL873526 36351328 984 - 42659167 agacttgaaaactgacaggactccttgatccatgggcttcaaaacagatgctgttaaaaaaaaaaaaaagaaaagaaaagaaaagaaaagaaaaaagatgctgtattaggcatgcaaaaaacattaaactctttgtacatttccatcagcgtgctttggtgatcagaa---gcattgtcaatgaggagtaatgatattttgaaaggaatctt---tgagcagtaggtttcaacactggacttaaaatattcagtaaaccatgctataaa--------ctatcatccaggctttcctgttccattgataaaagcacaagcagagtagatctgatgtgatttttaagggccctaagatctgggggatggcaagtgagcactgacttc-accttaagtcaccaggtgcattagtccctaacaagaaagtcaacctgtcctttgaagcaaggtactgacttctttctatagctac--aagtcaaagatggcaccttcttccaatagaaagaaccatttcaccatcac-tgaaaatctgctgtttagttgtagccaccttcatagctagcttcttagctagatcttctggataatt-----------------------ttgctgcttcacttcatacttttatgtt---atgaaaatggattctttccttaactttcataagctaatctgtgctagcttctaacttttcttctacagctttct-caccactcagtcttcacataattg-aagccag-----ttaaggccttattct-ggattagggtatggcttacgggaatgctgtg----gtttgatcttccatccagaccacttaaac-tttgtccacagcagcaatgcagctgttttgctttcttatcattcatgtgttcactggagtggtacttttaattccctttaagaactcttcctgtgcattcacaacttggtta-ataactggtataagaggcctaacttttgacgtacttcagcttttgacatgcctttctcccgaagcttaatcatttctagcttctgattt-aa i otoGar3.GL873526 I 290 C 0 e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 990319 3377 + 1946073 I a score=85761.000000 s hg38.chr22_GL383582v2_alt 148833 13 + 162811 agtgagagatgtg s panTro5.chr22 28928381 13 + 37823149 agtgagagatgtg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41202942 13 + 50109623 agtgagagatgtg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3226136 13 + 4464012 agtgagagacgtg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106719286 13 - 115148730 agtgagagatgtg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84338295 13 + 92844088 agtgagagatgtg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87684661 13 - 96509753 agtgagagatgtg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7181850 13 - 13098629 agtgagagatgtg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4141228 13 - 4483953 agtgagagatgtg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24771325 13 + 33263144 agtgagagatgtg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14052178 13 - 14338769 agtgagagatgtg i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2017581 13 - 2117846 agttggagatgtg i calJac3.chrUn_GL286373 C 0 C 0 s otoGar3.GL873526 36352312 13 - 42659167 agtaagagacttg i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 43690 213 - 704494 I e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e cebCap1.NW_016107750v1 1412820 213 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 990319 3377 + 1946073 I a score=1075426.000000 s hg38.chr22_GL383582v2_alt 148846 220 + 162811 caattcttcctgtcacttgaacatttaat-ggtcatgatcaggttattaactgacctaacttcaatactgttgtgtctg--------aggtaacagagagacctgag--gaggtggtgagatggggggacacccagttggcagcagtctgaacacacatctatacacaacatgtatatattaagttcgccgtcttatatgggagtgctttgtggcgctccaaaacaattac s panTro5.chr22 28928394 220 + 37823149 caattcttcctttcacttgaacatttaat-ggtcacgatcaggttattaactgacctaacttcaatactgttgtgtctg--------aggtaacagagagacctgag--gaggtggtgagatgggggaacgcccagttggcagcagtctgaacacacatctatacacaacatgtatatattaagttcgccgtcttatatgggagtgctttgtggcgctccaaaacaattac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41202955 220 + 50109623 caattcttcctttcacttgaacatttaat-ggtcacgatcaggttattaactgacctaacttcaatactgttgtgtctg--------aggtaacagagagacctgag--gaggtggtgagatgggggaacgcccagttggcagcagtctgaacacacatctatacacaacatgtatatattaagttcgccgtcttatatgggagtgctttgtggcgctccaaaacaattac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3226149 220 + 4464012 caattcttcctttcacttgaacatttaat-ggtcacaatcaggttattaactgacctaacttcaatactgttgtgtctg--------aggtaacagagagacctgag--gaggtggtgagatgggggaacacccaattggcagcagtctgaacacacatctatacacaacatgtatatattaagttcgccgtcttatatgggagtgctttgtggcgctccaaaacaattac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106719299 218 - 115148730 taattcttcctttcacttgaacacttaat-ggtcacgatcaggttattaactgacctaacttcaatactgttgtgtccg--------aggtaac--agagacctgag--gaggtggtgagatggaggaacacccagttggcagcagtctgaacacacatctatacacaacatgtataaatcaagttcgccgtcttatatgggagtgctttgtggcgctccaaaacaattac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84338308 219 + 92844088 caattcttcctttcacttgaacacttaat-gaccacggtcaggttattaactgacctaacttcaataccgttgtgttca--------aaggaagagagagacccgag--gagatgatgagatgggggaacacccggttggcagcagtctgaacacacatctatacacaacatgtacagattaagttcaccatcttatatgggagtgc-ttgtggtgcttcaaaacaattac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87684674 220 - 96509753 caattcttcctttcacttgaacacttaat-gaccacggtcaggttattaactgacctaacttcaataccgttgtgttca--------aaggaagagagagacccgag--gagatgatgagatgggggaacacccggttggcagcagtctgaacacacatctatacacaacatgtacagattaagttcaccgtcttatatgggagtgctttgcggtgcttcaaaacaattac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7181863 220 - 13098629 caattcttcctttcacttgaacacttaat-gaccaccgtcaggttattaactgacctaacttcaataccgttgtgttca--------aaggaagagagagatccgag--gagatgatgagatgggggaacacccggttggcagcagtctgaacacacatctatacacaacatgtacagattaagttcaccgtcttatatgggagtgctttgtggtgcttcaaaacaattac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4141241 220 - 4483953 caattcttcctttcacttgaacacttaat-gaccacggtcaggttattaactgacctaacttcaataccattgtgttcg--------aaggaagagacagacccgag--gagaagatgagatgggggaacacccggttggcagcagtctgaacacacatctatacacaacatgtacagattaagttcgccgtcttatatgagagtgctttgtggtgcttcaaaacaattac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24771338 220 + 33263144 taattcttcctttcacttgaacacttaat-gaccacggtcaggttattaactgacctaacttcaataccgttgtgttca--------aaggaagagagagacccgag--gagaagatgagatgggagaacacccggttggcagcagtctgaacacacatctatacacaacatgtacagattaagttcgccgtcttatatgggagtgctttgtagtgcttcaaaacaattac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14052191 220 - 14338769 caattcttcctttcacttgaacacttaat-gaccacggtcaggttattaactgacctaacttcaataccattgtgttca--------aaggaagagagagacccgag--gagaagatgagatgggggaacacccggttggcagcagtctgaacacacatctatacacaacatgtacagattaagttcgccatcttatatgagagtgctttgtggtgcttcgaaacaattac i manLeu1.NW_012102031v1 C 0 C 0 s otoGar3.GL873526 36352325 213 - 42659167 tgacccttcctttcaatggaacacttaagaggccactg-cag--tcttaattggcttgatttcaacattattgtgttgaacaacaatagggaatagacaggacccagtagagaaagagagacagggaacagtacaat--ataacagtcagaacacacat--------aacct-----taatcagttcactatcttaggtagatgtggtttgtggcaccccaaaacaattac i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 43690 213 - 704494 I e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e cebCap1.NW_016107750v1 1412820 213 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2017594 0 - 2117846 C e colAng1.NW_012115588v1 990319 3377 + 1946073 I a score=50337.000000 s hg38.chr22_GL383582v2_alt 149066 13 + 162811 aaaagtaacatca s panTro5.chr22 28928614 13 + 37823149 aaaagtaacatca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41203175 13 + 50109623 aaaagtaacatca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3226369 13 + 4464012 aaaagtaacatca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106719517 13 - 115148730 aaaagtaacatca i nomLeu3.chr7b C 0 C 0 s macNem1.NW_012012688v1 7182083 13 - 13098629 aaaagtaacatca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4141461 13 - 4483953 aaaagtaacatca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24771558 13 + 33263144 aaaagtaacatca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14052411 13 - 14338769 aaaagtaacatca i manLeu1.NW_012102031v1 C 0 I 3219 s otoGar3.GL873526 36352538 12 - 42659167 -aagttaacatca i otoGar3.GL873526 C 0 I 132 e aotNan1.NW_018512389v1 43690 213 - 704494 I e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e cebCap1.NW_016107750v1 1412820 213 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2017594 0 - 2117846 C e colAng1.NW_012115588v1 990319 3377 + 1946073 I e macFas5.chr10 87684894 0 - 96509753 C e rheMac8.chr10 84338527 0 + 92844088 C a score=304461.000000 s hg38.chr22_GL383582v2_alt 149079 288 + 162811 ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggat--catgaggtcaggagattgagaccaacctg-gctaacacggtgaaaccctgtctctactaaaaatacaaaaaaattagccaggtgtgatggcgggcacctgtagtcccagctactcgggaggctgacgcagga--gaatggcgtgaacgcggcaggcagagcttgcagtgagccgaaatcgcaccactgcactccagcctgggcgacagagcgagactccatctcaaaaaa s panTro5.chr22 28928627 288 + 37823149 gcccggacgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgtgtggat--catgaagtcaggagattgagaccaacctg-gctaacacggtgaaaccctgtctctactaaaaatacaaaaaaattagccaggtgtgatggcgggcacctgtagtcccagctactcgggaggctgaggcagga--gaatggcgtgaacgcggcaggcagagcttgcagtgagccgaaattgcaccactgcactccagcctgggcgacagagcgagactccatctcaaaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41203188 288 + 50109623 GCccggacgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgtgtggat--catgaagtcaggagattgagaccaacctg-gctaacacggtgaaaccctgtctctactaaaaatacaaaaaaattagccaggtgtgatggcgggcacctgtagtcccagctactcgggaggctgaggcagga--gaatggcgtgaacgcggcaggcagagcttgcagtgagccaaaattgcaccactgcactccagcctgggcgacagagcgagactccatctcaaaaaa i panPan2.chr22 C 0 M 531 s gorGor5.CYUI01015375v1 3226382 288 + 4464012 ggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggat--catgaggtcaggagattgagaccaacctg-gctaacacggtgaaaccctgtctctactaagaatacaaaaaaattagccaggtgtgatggtgggcacctgcagtcccagctactcggaaggctgaggcagga--gaatggcgtgaacgcggcaggcagagctcgcagtgagccgaaattgcaccactgcactccagcctgggcgacagagcgagactccatctcaaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106719530 288 - 115148730 ggccgggcgcggtagctcatgcctgtaatcccagcactttgggaggccgaggtgggcggat--catgaggtcaggagatcgagaccaaccta-gctaacacggtgaagccccgtctctactaaaaacacaaaaaaattagccgggtgtgatggcaggcgcctgtagtcccagctactcaggaggctgagtaagga--gaatggcgtgaacccaggaggcggagcttgcagtgagctgaaattgcgccactgcactccagcttgggcgacagagcgagactccatctcaaagaa i nomLeu3.chr7b C 0 C 0 s otoGar3.GL873526 36352682 266 - 42659167 ggccaagcacagtggctcaaacctgtaatcctggcattctgggaggccaaggcaggtggattgcctgagctca-gagtttgagaccagcctgagctag---agcgagaccctacctctaacaa--------------tagccaggcgttgtggcaggaacctatagtcccagctacttggaaggctgaggtaagaagggatcacttgagcccaagagtttgaggttgctatgagctacaa---cgccagatcactctaccgagggtgacaaaga------ctacctcaaaaaa i otoGar3.GL873526 I 132 C 0 e aotNan1.NW_018512389v1 43690 213 - 704494 I e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e cebCap1.NW_016107750v1 1412820 213 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2017594 0 - 2117846 C e colAng1.NW_012115588v1 990319 3377 + 1946073 I e manLeu1.NW_012102031v1 14052424 3219 - 14338769 I e chlSab2.chr19 24771571 0 + 33263144 C e cerAty1.NW_011999588v1 4141474 0 - 4483953 C e macNem1.NW_012012688v1 7182096 0 - 13098629 C e macFas5.chr10 87684894 0 - 96509753 C e rheMac8.chr10 84338527 0 + 92844088 C a score=4595.000000 s hg38.chr22_GL383582v2_alt 149367 7 + 162811 gaaaaaa s panTro5.chr22 28928915 7 + 37823149 gaaaaaa i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3226670 6 + 4464012 -gaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106719818 6 - 115148730 -gaaaaa i nomLeu3.chr7b C 0 C 0 s otoGar3.GL873526 36352948 7 - 42659167 aaaaaaa i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 43690 213 - 704494 I e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e cebCap1.NW_016107750v1 1412820 213 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2017594 0 - 2117846 C e colAng1.NW_012115588v1 990319 3377 + 1946073 I e manLeu1.NW_012102031v1 14052424 3219 - 14338769 I e chlSab2.chr19 24771571 0 + 33263144 C e cerAty1.NW_011999588v1 4141474 0 - 4483953 C e macNem1.NW_012012688v1 7182096 0 - 13098629 C e macFas5.chr10 87684894 0 - 96509753 C e rheMac8.chr10 84338527 0 + 92844088 C e panPan2.chr22 41203476 531 + 50109623 M a score=23153.000000 s hg38.chr22_GL383582v2_alt 149374 13 + 162811 aaaagtaacatcg s panTro5.chr22 28928922 13 + 37823149 aaaagtaacatcg i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3226676 13 + 4464012 aaaagtaacatcg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106719824 13 - 115148730 aaaagtaacatcg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84338527 13 + 92844088 aaaagtaacatca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87684894 13 - 96509753 aaaagtaacatca i macFas5.chr10 C 0 C 0 s manLeu1.NW_012102031v1 14055643 13 - 14338769 aaaagtaacatca i manLeu1.NW_012102031v1 I 3219 C 0 s otoGar3.GL873526 36352955 10 - 42659167 aaaaaaaAAA--- i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 43690 213 - 704494 I e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e cebCap1.NW_016107750v1 1412820 213 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2017594 0 - 2117846 C e colAng1.NW_012115588v1 990319 3377 + 1946073 I e chlSab2.chr19 24771571 0 + 33263144 C e cerAty1.NW_011999588v1 4141474 0 - 4483953 C e macNem1.NW_012012688v1 7182096 0 - 13098629 C e panPan2.chr22 41203476 531 + 50109623 M a score=1486232.000000 s hg38.chr22_GL383582v2_alt 149387 383 + 162811 atgatcactgatcacagatcttcatgacag---ataacaatt--ttaaaagtttaaggctgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaagcgggtggatcatctgagaacagga-gttcgagaccagcctagccaatacggagaaaccccgtctctactaaaaatacaaaattagcagggcgtgatggcgcatgcctgtaatcccagctactcgggaggctaaggcaggagaatcacttgaaccccggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagtgaaaatctctctcaga---aaaaaaaaaaaaagtttaaaatattcaggccaggtgtggtggctcat s panTro5.chr22 28928935 380 + 37823149 atgatcactgatcacagatcttcatgacag---ataacaatt--ttaaaagtttaaggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaagcgggtggatcgtctgagatcagga-gttcgagaccagcctagccaatacagagaaaccccgtctctaccaaaaatacaaaattagcagggcgtgatggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaaccccggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagcgaaaatctctctcag------agaaaaaaaaagtttaaaatattcgggccaggtgtggtggctcat i panTro5.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3226689 378 + 4464012 atgatgactgatcacagatcttcatgacag---ataacaatt--ttaaaagtttaaggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaagc-ggtggatcatctgagatcagga-gttcgagaccagcctagccaatagggagaaaccccatctctactaaaaatacaaaattagcagggcgtggtggcgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaaccccggaggcggagattgcagtgagccaaaatcatgccattgcactccagcctggggaacaagagcgaaaatctctctcag-------aaaaaaaaaagtttaaaatattcgggccaggtgtggtggctcat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106719837 380 - 115148730 acgatcactgatcacagattttcatgacag---gtaacaatt--ttaaaagtttaaggatgagcgcggtggctcacgcctataatcccagcactttgggaggccgaagtgggtggattgtctgaggtcagga-gtttgagaccagcctggccaatacagagaaaccccatctctactaaaaatacaaaattagcagggcgtggtggcgcacgcctggaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcggagaatgcagtgagccaaaatcgcaccattgcactccagcctggggaacaagagcgaaaatctatctcag------aaaaaaaaaaagtttaaaatatgcgggccagctgtggtggctcac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84338540 383 + 92844088 atgatcactgattatagatcttcgtgacagataataacaatt--ttaaaagtttaaggctgggcgcggtgactcacgcctgtaatcccagcactttgggaggccaaggcgggtggattgcctgaggtcagga-gttcgagaccagcctggccaatacagagaaaccccgtctctactaaaaatacaaaattagcagggcgtggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaa-ccaggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagcgaaaatttatctcagg---aaaaaaaaaaaaaattt--aatattcgggccaggtgtggtggctcac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87684907 383 - 96509753 atgatcactgattatagatcttcgtgacagataataacaatt--ttaaaagtttaaggctgggcgctgtgactcatgcctgtaatcccagcactttgggaggccaaggcgggtggattgcctgaggtcagga-gttcgagaccagcctggccaatacagagaaaccccgtctctactaaaaatacaaaattagcagggcgtggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaa-ccaggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagcgaaaatttatctcagg---aaaaaaaaaaaaaattt--aatattcgggccaggtgtggtggctcac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7182096 383 - 13098629 atgatcactgattatagatcttcgtgacagataataacaatt--ttaaaagtttaaggctgggcgcggtgactcacgcctgtaatcccagcactttgggaggccaaggcgggtggattgcctgaggtcagga-gttcgagaccagcctggccaatacagagaaaccccgtctctactaaaaatacaaaattagcagggcgtggtggtacatgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaa-ccaggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagcgaaaatttatctcagg---aaaaaaaaaaaaaattt--aatattcgggccaggtgtggtggctcac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4141474 386 - 4483953 atgatcactgattatagatcttcatgacagataataacaatt--ttaaaagtttaaggctgggcgcggtggctcacgcctgtaatcccagcaatttgggaggccaaggcgggtggactgcctgaggtcagga-gttcgagaccagcctggccaatacagagaaaccccgtctctactaaaaatacaaaattagcagggcatggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaa-ccaggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagggaaaatttatctcaggaaaaaaaaaaaaaaaaattt--aatattcaggccaggtgtggtggctcac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24771571 382 + 33263144 atgatcactgatcatagatcttcatgacagataataacaatt--ttaaaagtttaaggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggagggtggattgcctgaggtcagaa-gttcaagaccagcctggccaatacagagaaaccccgtctctactaaaaatacaaaattagcagggcgtggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaa-ccaggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagcgaaaatttatctcagg----aaaaaaaaattttttt--aatattcgggccaggtgtggtggctcat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14055656 384 - 14338769 atgatcactgattatagatcttcatgacagataataacaatt--ttaaaagtttaaggctgggcgcggtggctcacgcctgtaatcccagcaatttgggaggccaaggcgggtggattgcctgaggtcagga-gttcgagaccagcctggccaatacagagaaaccccgtctctactaaaaatacaaaattagcagggcatggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaa-ccaggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagggaaaatttatctcagg--aaaaaaaaaaaaaaattt--aatattcaggccaggtgtggtggctcac i manLeu1.NW_012102031v1 C 0 C 0 s otoGar3.GL873526 36352965 322 - 42659167 ATTGCCAC-----ACAAATCTT---------------TAATTTGTTTGAAGAAAAAggcttggc------------gcctgtag-ctcagcagctagggtgccagccacatata------ctggggctggcaggcttgcacctggcctaggc-ctaccaaacaacacc----caacaaaaaa--------tagctgggtattgtggcatgggcctgtaatcccaacaaccagggaggctgaggcaagagaactgcttgaacccaagagtttgaggatgccataagctatgat---gccccggcattctagagagagtgacaa-agtgagactctgtcttaat---taaaaaaaaaaaaGGTg-----------gccaggtaaggctgttcat i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 43690 213 - 704494 I e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e cebCap1.NW_016107750v1 1412820 213 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2017594 0 - 2117846 C e colAng1.NW_012115588v1 990319 3377 + 1946073 I e panPan2.chr22 41203476 531 + 50109623 M a score=523450.000000 s hg38.chr22_GL383582v2_alt 149770 98 + 162811 gcctgtaat-cccagcactttgggaggctgaggcaggcagatcacttcaggttaggagttccagaccagtctggccaacacagtgaaaccccacctcta s panTro5.chr22 28929315 98 + 37823149 gcctgtaat-cccagcactttgggaggctgaggcaggcagatcacttcaggttaggagttccagaccagtctggccaacacagtgaaaccccacctcta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204007 99 + 50109623 gcctgtaatccccagcactttgggaggctgaggcaggcagatcacttcaggttaggagttccagaccagtctggccaacacagtgaaaccccacctcta i panPan2.chr22 M 531 C 0 s gorGor5.CYUI01015375v1 3227067 98 + 4464012 gcctgtaat-cccagcactttgggaggctgaggcaggcagatcacttcaggttaggagttccagaccagtctggccaacacagtgaaaccccacctcta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106720217 98 - 115148730 gcctgtaat-cccagcattttgggaggctgaggcaggcagatcacttcaggttaggagttccagaccagtctggccaacacggtgaaaccccacctcta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84338923 98 + 92844088 gcctgtaat-cccagcactttgggaggccgagacaggcagatcacttcaggtcaggagttccagaccagtctggccaacatggtgaaattccacctcta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87685290 98 - 96509753 gcctgtaat-cccagcactttgggaggccgagacaggcagatcacttcaggtcaggagttccagaccagtctggccaacatggtgaaattccacctcta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7182479 98 - 13098629 gcctgtaat-cccagcactttgggaggccgagacaggcagatcacttcaggtcaggagttccagaccagtctggccaacatggtgaaattccacctcta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4141860 98 - 4483953 gcctgtaat-cccagcactttgggaggccgagacaggcagatgactccaggtcaggagttccagaccagtctgtctaacatggtgaaattccacctcta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24771953 98 + 33263144 gcctgtaat-cccagcactttgggaggccgagacaggcagatcacttcaggtcaggagttccagaccagtctggccaacatggtgaaattccacctcta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14056040 98 - 14338769 gcctgtaat-cccagcactttgggaggccgagacaggcagatgactccaggtcaggagttccagaccagtctggccaacatggtgaaattccacctcta i manLeu1.NW_012102031v1 C 0 C 0 s otoGar3.GL873526 36353287 98 - 42659167 gtctttaat-cctagcactttaggaggccaatgtgggaggactgcttgaggccaggagtttgagatcagcctgagaaacagagcaagactttgtctcta i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 43690 213 - 704494 I e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e cebCap1.NW_016107750v1 1412820 213 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2017594 0 - 2117846 C e colAng1.NW_012115588v1 990319 3377 + 1946073 I a score=738970.000000 s hg38.chr22_GL383582v2_alt 149868 147 + 162811 ctaaaaata-----aaaatattagccgggcatggtggtgcacacctgtaatcccagctactcac-gaggctgagg-gggagaatcgctagaacccaggaggtggaggttgtagtgagccgaga--tggcgccacttc-actccagtgcagctctggg s panTro5.chr22 28929413 147 + 37823149 ctaaaaata-----aaaatattagccgggcatggtggtgcacacctgtaatcccagctactcac-gaggctgagg-gggagaatcgctagaacccaggaggtggagattgtagtgagccgaga--tggcgccacttc-actccagtgcagctctggg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204106 147 + 50109623 ctaaaaata-----aaaatattagccgggcatggtggtgcacacctgtaatcccagctactcac-gaggctgagg-gggagaatcgctagaacccaggaggtggaggttgtagtgagccgaga--tggcgccacttc-actccagtgcagctctggg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227165 147 + 4464012 ctaaaaata-----aaaatattagccaggcatggtggcgcacacctgtaatcccagctactcac-gaggctgagg-gggagaatcaccagaacccaggaggtggaggttgtagtgagccaaga--tggcgccacttc-actccagtgcagctctggg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106720315 148 - 115148730 ctaaaaata-----aaaatattagccaggcgtggtggcacacacctgtaatcccagctactcag-gaggctgagg-gggagaatcgctggaatccaggtggtggaggttgtagtgagccgaga--tggcgccactgcaactccagtgcagctctggg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339021 145 + 92844088 ctaaaaaaa----caaaagattagccgggcatggtggcgcacgcctgtaatcccagctactcagagaggccgagg-aggagaatcgctggaacccagaaggcggacgttatagtgagctgagatgtggcgccactgc-actccag------cctggg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87685388 145 - 96509753 ctaaaaaaa----caaaagattagccgggcatggtggcgcacgcctgtaatcccagctactcagagaggccgagg-aggagaatcgctggaacccagaaggcggacgttatagtgagctgagatgtggcgccactgc-actccag------cctggg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7182577 145 - 13098629 ctaaaaaaa----caaaagatgagccgggcatggtggcgcacgcctgtaatcccagctactcagagaggccgagg-aggagaatcgctggaacccagaaggcggacgttatagtgagctgagatgtggcgccactgc-actccag------cctggg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4141958 143 - 4483953 ctaaaaata----caaaagattagccgggcatggtggcgcacgcctgtaatcccagctactcagagaggccaagg-aggagaatcgctggaacccagaaggcggacgttatagtgagctgaga--tggcgccactgc-actccag------cctggg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24772051 143 + 33263144 ctaaaaata----cagaagattagccgggcatggtggcgcacgcctgtaattccagctactcagagaggccgagg-aggagaatcgctggaacccagaaggcggacgttatagtgagctgaga--tggcgccactgc-actccag------cctggg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14056138 143 - 14338769 ctaaaaata----caaaagattagccgggcatggtggcgcacgcctgtaatcccagctactcagagaggccgagg-aggagaatcgctggaacccagaaggcggacgttatagtgagctgaga--tggcgccactgc-actccag------cctggg i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2017594 139 - 2117846 ctaaataca--------aaattagccaagcgtggtggtacatgcctataatcccagctactcgg-gaagctgaggtaagagaatcacctgaacccaggaggtggaggtttcagtgagttgaga--ttgcaccactgc-actccag------cgtggg i calJac3.chrUn_GL286373 C 0 I 1 s otoGar3.GL873526 36353385 151 - 42659167 caaaaaaaaaaaaaaaaaaaatagctggttgcagtgacatgcaccattagtcctagctacttga-gagactgaggcagaaggattgcttgagcccaggagttcacggttgcagtgagctatga--tgaaaccactga-accccTGTGAAGTGCTG-- i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 43690 213 - 704494 I e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e cebCap1.NW_016107750v1 1412820 213 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 990319 3377 + 1946073 I a score=258051.000000 s hg38.chr22_GL383582v2_alt 150015 56 + 162811 agacagagcgagactccgactc-aaaaataaataaaataaaat----------------------------gaataaaatgttta s panTro5.chr22 28929560 56 + 37823149 agacagagcgagactccgactc-aaaaataaataaaataaaat----------------------------aaataaaatgttta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204253 56 + 50109623 agacagagcgagactccgactc-aaaaataaataaaataaaat----------------------------aaataaaaTgttta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227312 56 + 4464012 agacagagcgagactccgactc-aaaaataaataaaataaaat----------------------------aaataaaatgttta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106720463 51 - 115148730 agacagaacgagactccgactc-aaaaataaataaaata---------------------------------aacaaaatgttta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339166 84 + 92844088 agacagagtgagactccgactc-aaaaataaataaaattaaattaaattaaattaaattaaaattaaaattaaataaaatgttta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87685533 84 - 96509753 agacagagtgagactccgactc-aaaaataaataaaataaaattaaattaaattaaattaaaattaaaataaaataaaatgttta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7182722 84 - 13098629 agacagagtgagactccgactc-aaaaataaataaaataaaataaaattaaattaaattaaaattaaaataaaataaaatgttta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142101 84 - 4483953 agacagagtgagactccgactc-aaaaataaataaaattaaattaaattaaattaaataaaaataaaaataaaataaaatgttta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24772194 83 + 33263144 agaaagagtgagactctgactc-aaaaataaataaaataaaataaaataaaattaaatt-aaattaaaattaaataaaatgttta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14056281 80 - 14338769 agacagagtgagactccgactcaaaaaataaataaaataaaattaaattaaataa-----aaataaaaataaaataaaatgttta i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 993696 55 + 1946073 aGACAGAGCGAGACTCCGCCTC-AAAa--aaataaaat---------------------------aaaataaaataaaatgttta i colAng1.NW_012115588v1 I 3377 C 0 s calJac3.chrUn_GL286373 2017734 56 - 2117846 aacaagagcgaaactccatctc-aaaa--------aattaatt--------------------cgttaattaattagaaagttta i calJac3.chrUn_GL286373 I 1 I 4 s otoGar3.GL873526 36353536 25 - 42659167 --------------------------------TAAGATGAGAT----------------------------ATACCTGATTTCCA i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 43690 213 - 704494 I e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e cebCap1.NW_016107750v1 1412820 213 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=218961.000000 s hg38.chr22_GL383582v2_alt 150071 23 + 162811 aaatattgggagaattaccaaaa s panTro5.chr22 28929616 23 + 37823149 aaatattgggagaattaccaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204309 23 + 50109623 aaatattgggagaattaccaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227368 23 + 4464012 aaatattgggagaattaccaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106720514 23 - 115148730 aaatattgggagaattaccaaag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339250 23 + 92844088 aaatattgggagaattaccaaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87685617 23 - 96509753 aaatattgggagaattaccaaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7182806 23 - 13098629 aaatattgggagaattaccaaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142185 23 - 4483953 aaatattgggagaattaccaaac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24772277 23 + 33263144 aaatattgggagaattgccaaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14056361 23 - 14338769 aaatattgggagaattaccaaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 993751 23 + 1946073 aaatattgggagaattaccaaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2017794 23 - 2117846 aaatattgggagaattaccaaaa i calJac3.chrUn_GL286373 I 4 C 0 s cebCap1.NW_016107750v1 1413033 23 - 1807191 aaatattggcagaattaccaaaa i cebCap1.NW_016107750v1 I 213 C 0 s aotNan1.NW_018512389v1 43903 23 - 704494 aaatattgggagaattaccaaaa i aotNan1.NW_018512389v1 I 213 C 0 s otoGar3.GL873526 36353561 23 - 42659167 AAATTTCTAGGTGATAATaataa i otoGar3.GL873526 C 0 I 208 e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=1357161.000000 s hg38.chr22_GL383582v2_alt 150094 168 + 162811 tgtggcacaaagacacaaagtgagcacatgctgttg-aaaaattggcaccaacagacttagacttgctcaatgcagggttgcaataaaccttcaatttataaaac-aaaaaaatcccacaatatctgtgaagtacaataaagtagaatgcaataaaatgaggtatccctg s panTro5.chr22 28929639 168 + 37823149 tgtggcacaaagacacaaagtgagcacatgctgttg-aaaaattggcaccaacagacttagacttgctcaatgcagggttgtcataaaccttcaatttataaaac-aaaaaaatcccacaatatctgtgaagtacaataaagtagaatgcaataaaatgaggtatccctg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204332 168 + 50109623 tgtggcacaaagacacaaagtgagcacatgctgttg-aaaaattggcaccaacagacttagacttgctcaatgcagggttgtcataaaccttcaatttataaaac-aaaaaaatcccacaatatctgtgaagtacaataaagtagaatgcaataaaatgaggtatccctg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227391 169 + 4464012 tgtgacacgaaaacacaaagtgagcacatgctgttgaaaaaattggcaccaacagacttagacttgctcaatgcagggttgtcacaaaccttcaatttataaaac-aaaaaaatcccacaatatctgtgaagtacaataaagtagaatgcaataaaatgaggtatccctg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106720537 168 - 115148730 tgtgacaaaaagacacaaagtgaacacatgctgttg-aaaaattggcaccaacagactcagacttgctcaatgcagggttgccataaaccttcgatttataaaac-aaaaaaatcccacaatatctgtgaagtacaataaagtagaatgcaataaaatgaggtatccctg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339273 167 + 92844088 tgtgacataaag--acaaagcgagcacatgctgttg-aaaaattggcaccaacagaattagacttgatcaaggcacggttgccataaatcttcaatttataaaacgaaaaaaatcccaaaatatctgtaaagtataataaagtagaacgcaataaaatgaggtatccctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87685640 167 - 96509753 tgtgacataaag--acaaagcgagcacatgctgttg-aaaaattggcaccaacagaattagacttgatcaaggcacggttgccataaatcttcaatttataaaacgaaaaaaatcccaaaatatctgtaaagtataataaagtagaacgcaataaaatgaggtatccctg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7182829 167 - 13098629 tgtgacataaag--acaaagcgagcacatgctgttg-aaaaattggcaccaacagaattagacttgatcaaggcacggttgccataaatcttcaatttataaaacgaaaaaaatcccaaaatatctgtaaagtataataaagtagaacacaataaaatgaggtatccctg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142208 167 - 4483953 tgtgacataaag--acaaagtgagcacatgctgttg-aaaaattggcaccaacagaattagacttgatcaaggcacggttgccataaatcttcaatttataaaacgaaaaaaatcccacaatatctgtaaagtacaataaagtagaacgcaataaaatgaggtatccctg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24772300 167 + 33263144 tgtgacataaag--acaaagtgagcacctgctgttg-aaaaattggcaccaacagaattagacttgatcaaggcagggttgccataaatcttcaatctataaaacgaaaaaaatcccacaatatctgtaaagtacaataaagtagaatgcagtaaaatgaggtatccctg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14056384 167 - 14338769 tgtgacataaag--acaaagtgagcacatgctgttg-aaaaattggcaccaacagaattagacttgatcaaggcacggttgccataaatcttcaatttataaaacgaaaaaaatcccacaatatctgtaaagtacaataaagtagaacgcaataaaatgaggtatccctg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 993774 167 + 1946073 tgtgacataaag--acaaagtgagcacatgctgttg-aaaaactggcaccaacagaattagacttgatcaaggcagggttgccataaatcttcaatttataaaacgaaaaaaatcccacaatatctgtaaagtacaataaagtagaatgcaataaaatgaggtacccctg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2017817 164 - 2117846 tatgacacaaagacacaaagcaagcatatgctgttg-gaaacttggcacctctacagttagacttgctcaatgcagagttgccataaaccttcaatttataaaac--aaaaaaccccacaatacctgcgaagtacaataaagtagaatgcaataaa---atgtatgcttA i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1413056 167 - 1807191 tatgacactaagacacaaagggagcatatgctgttg-gaaacttggcacctctagagttagacttgctcaatgcagggttgccataaaccttcaatttataaaac--aaaaaatcccacaatatctgtgaagtacaataaagtggaatgcaataaaatgatgtatgcctA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 43926 167 - 704494 tatgacacaaagacacaaagcgagcatatgctgttg-gaaacttggcacctctagagttagacttgctcaatgcagggttgccataaaccttcaatttataaaac--aaaaaatcccacagtatctgtgaagtacaataaagtagaatgcaataaaatgatgtatgcctA i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 140204 0 + 1056298 C e canFam3.chr10 46158195 0 - 69331447 C e otoGar3.GL873526 36353584 208 - 42659167 I e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=30930.000000 s hg38.chr22_GL383582v2_alt 150262 3 + 162811 TAT s panTro5.chr22 28929807 3 + 37823149 TAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204500 3 + 50109623 TAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227560 3 + 4464012 TAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106720705 3 - 115148730 TAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339440 3 + 92844088 TAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87685807 3 - 96509753 TAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7182996 3 - 13098629 TAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142375 3 - 4483953 TAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24772467 3 + 33263144 TAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14056551 3 - 14338769 TAT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 993941 3 + 1946073 TAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2017981 3 - 2117846 TAT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1413223 3 - 1807191 TAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 44093 3 - 704494 TAT i aotNan1.NW_018512389v1 C 0 C 0 s dasNov3.JH570235 140204 3 + 1056298 TGT i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46158195 0 - 69331447 C e otoGar3.GL873526 36353584 208 - 42659167 I e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=647996.000000 s hg38.chr22_GL383582v2_alt 150265 70 + 162811 TTCCAAA-GCTTCTAGGTGGTAATaataatagctaaaatttatctaatc---------attactg-------------------------taagtctg-gcaatgt---------- s panTro5.chr22 28929810 70 + 37823149 TTCCAAA-GCTTCTAGGTGGTAATaataatagctaaaatttatctaatg---------attactg-------------------------taagtctg-gcaatgt---------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204503 70 + 50109623 TTCCAAA-GCTTCTAGGTGGTAATaataatagctaaaatttatctaatg---------attactg-------------------------taagtctg-gcaatgt---------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227563 70 + 4464012 TTCCAAA-GCTTCTAGGTGGTAATaataatagctaaaatttatctaatg---------attactg-------------------------taagtctg-gcaatgt---------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106720708 70 - 115148730 TTCCAAA-GCTTCTAGGTGGTAATaataatagctaaaatttatctaatg---------attactg-------------------------taagtctg-gcaatgt---------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339443 69 + 92844088 TTCCAAA-GCTTCTAGGTGGTAATaacaatagctaaaatttatctaatg---------attact--------------------------taagtctg-gcaatgt---------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87685810 69 - 96509753 TTCCAAA-GCTTCTAGGTGGTAATaacaatagctaaaatttatctaatg---------attact--------------------------taagtctg-gcaatgt---------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7182999 69 - 13098629 TTCCAAA-GCTTCTAGGTGGTAATaacaatagctaaaatttatctaatg---------attact--------------------------taagtctg-gcaatgt---------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142378 69 - 4483953 TTCCAAA-GCTTCTAGGTGGTAATaacaatagctaaaatttatctaatg---------attact--------------------------taagtctg-gtaatgt---------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24772470 69 + 33263144 TTCCAAA-GCTTCTAGGTGGTAATaacaatagctaaaatttatctaatg---------attact--------------------------taagtctg-gcaatgt---------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14056554 69 - 14338769 TTCCAAA-GCTTCTAGGTGGTAATaacaatagctaaaatttatctaatg---------attact--------------------------taagtctg-gtaatgt---------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 993944 69 + 1946073 TTCCAAA-GCTTCTAGGTGGTAATaataatagctaaaatttatctaatg---------attact--------------------------aaagtctg-gcaatgt---------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2017984 71 - 2117846 TTCCAAAGGCTTCTAGATGGTAACGataatagctaaaatttatctaatg---------gttacta-------------------------taagtctg-gcaacgc---------- i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1413226 71 - 1807191 TTCCAAAGGCTTCTAGGTGGTAACGCtaatagctaaaatttatctaatg---------gttacta-------------------------taagtctg-gcaacat---------- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 44096 71 - 704494 TTCCAAAGGCTTCTAGGTGGTAATGataacagctaaaatttatctaatg---------gttatta-------------------------taagtctg-gcaatgt---------- i aotNan1.NW_018512389v1 C 0 C 0 s canFam3.chr10 46158195 67 - 69331447 TATCAAA-TTTTCTAGATGGTTat---aataggtaaactttatctagtg---------attactg-------------------------tgaaacag-gcaatat---------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 140207 109 + 1056298 TTCCAGA-TTTTCTA------AATGACAATAGCCAAAATGTACCTAGTGTTTATGAGAATTACTAATCAAATACATTAAATCAACTGCCTTAAATGTGTGCAAtgtcaggcaacat i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36353584 208 - 42659167 I e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=54995.000000 s hg38.chr22_GL383582v2_alt 150335 4 + 162811 tcta s panTro5.chr22 28929880 4 + 37823149 tcta i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204573 4 + 50109623 tcta i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227633 4 + 4464012 tcta i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106720778 4 - 115148730 tcta i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339512 4 + 92844088 tcta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87685879 4 - 96509753 tcta i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7183068 4 - 13098629 tcta i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142447 4 - 4483953 tcta i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24772539 4 + 33263144 tcta i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14056623 4 - 14338769 tcta i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 994013 4 + 1946073 tcta i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2018055 4 - 2117846 tcta i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1413297 4 - 1807191 tcta i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 44167 4 - 704494 tcta i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36353792 4 - 42659167 tcta i otoGar3.GL873526 I 208 C 0 s canFam3.chr10 46158262 4 - 69331447 ccta i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 140316 4 + 1056298 tcta i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5143583 2142 - 6317780 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=1790368.000000 s hg38.chr22_GL383582v2_alt 150339 156 + 162811 aaagct---tt--agttatgaactaatttaactggcacagccac-cc-acgaggtaggtacaattatta-tttccattttctagac-aacgaaacagaggc--agaat-----agtca-----tttgcttgacgtcacattgcaaacaaggggcagagctgggattcaaaaatcagg s panTro5.chr22 28929884 156 + 37823149 aaagct---tt--agttatgaactaatttaactggcacagccac-cc-acgagggaggtacaattatta-tttccattttctagac-aacgaaacagaggc--agaat-----agtca-----tttgcttgacgtcacattgcaaacaaggggcagagctgggattcaaaaatcagg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204577 156 + 50109623 aaagct---tt--agttatgaactaatttaactggcacagccac-cc-acgaggtaggtacaattatta-tttccattttctagac-aacgaaacagaggc--agaat-----agtca-----tttgcttgacatcacattgcaaacaaggggcagagctgggattcaaaaatcagg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227637 156 + 4464012 aaagct---tt--agttatgaactaatttaactggcacagccac-cc-acgaggtaggtacaattatta-tttccattttctagac-aacgaaacagaggc--agaat-----agtca-----tttgcttgacgtcacattgcaaacaaggggcagagctgggattcaaaaatcagg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106720782 156 - 115148730 aaagct---tt--agttatgaactaatttaactggcacaaccac-cc-acgaggtaggtacaattatta-tttccattttctagac-aacgaaacagaggc--agaat-----agtta-----tttgcttgaggtcacattgcaaacaagtggcagagctaggattcaaaaatcagg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339516 158 + 92844088 aaagct---tt--agttatgaactaatttaactggcacaaccac-cc-atgaggtaggtacaattattattttccattttctagacaaaaaaaagacaggc--agaat-----agtta-----tttgcttgaggtcacattgcaaacaagtggcagacctgggattcaaaaatcagg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87685883 157 - 96509753 aaagct---tt--agttatgaactaatttaactggcacaaccac-cc-atgaggtaggtacaattattattttccattttctagac-aaaaaaagacaggc--agaat-----agtta-----tttgcttgaggtcacattgcaaacaagtggcagacctgggattcaaaaatcagg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7183072 157 - 13098629 aaagct---tt--agttatgaactaatttaactggcacaaccac-cc-acgaggtaggtacaattattattttccattttctagac-aaaaaaagacaggc--agaat-----agtta-----tttgcttgaggtcacattgcaaacaagtggcagacctgggattcaaaaatcagg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142451 155 - 4483953 aaagct---tt--agttatgaactaatttaactggcacaaccac-cc-acgaggtaggtacaattattattttccattttctagac-aaaaaaacacaggc--agaat-----agtta-----tttgctt--ggtcacattgcaaacaagtggcagagctgggattcaaaaatcagg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24772543 158 + 33263144 aaagct---tt--agttatgaactaatttaactggcacaaccac-cc-acgaggtaggtacaattattattttccattttctagac-aaaaaaagagaggc--agaat-----agtta----ttttgcttgaggtcacattgcaaacaagtggcagagctgggattcaaaaatcagg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14056627 155 - 14338769 aaagct---tt--agttatgaactaatttaactggcacaaccac-cc-acgaggtaggtacaattattattttccattttctagac-aaaaaaagacaggc--agaat-----agtta-----tttgctt--ggtcacattgcaaacaagtggcagagctgggattcaaaaatcagg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 994017 156 + 1946073 aaagct---tt--agttatgaactaatttaactggcacaaccac-cc-acgaggtaggtacaattatta-tttccattttctagac-aaaaaaacagaggc--agaat-----agtta-----tttgcttgaggtcacattgcaaacaagtggcagagctgggattcaaaaatcagg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2018059 156 - 2117846 aaagct---tt--agtgatgaactaatttaactagcacgaccac-cc-ataaggtaggtacaattatta-tttccattttctagac-aatgaaacagagta--agaat-----agtta-----tttgcttgaggtcacactgcaaaaatgtggcagagctgggattcaaaaatcagg i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1413301 156 - 1807191 aaagct---tt--agtgatgaactaatttaactggcacgaccac-cc-ataaggtaggtacaattatta-tttccattttctagac-aatgaaacagaggc--agaat-----agtta-----tttgcttgaggtcacactgcaaaaaagtggcagagctgggattcaaaaatcagg i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 44171 156 - 704494 aaagct---tt--agtgatgaactaatttaactggcacgaccac-cc-ataaggtaggtacaattatta-tttccattttctagac-aatgaaacagaggc--agaat-----agtta-----tttgcttgaggtcacactgcaaaaaagtggcaaagctgggattcaaaaatcaga i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5145725 158 - 6317780 aaaGCT---TT--AGTtatgaactaatctaactggtgcaaacacttc-acgaggtaagtacaattatta-tttccattttctagac-gaggaaacagaggcaaagaat-----agttaagttattcgcttaaggccacactgcaaataagcaagagagctgggattcaaaa------ i proCoq1.NW_012136747v1 I 2142 C 0 s otoGar3.GL873526 36353796 156 - 42659167 aaaaccaaaaT--AGCtgtaaactaatttaattggcataaatactcc-ataaggtaagtataattagta-ttcccatattccagac-aaggaaatagaggtaaagaat-----agttaagttattcacttaaggtcacgatgcaaataagtgagagagctaggacc----------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46158266 152 - 69331447 aaagtg---tt--catcattaactaatttaattagcacaaccac-------aggtaagtacaattaata-tttccatttt-taggc-aagaaaacaaaggcacagaaa-----agtta-----cttgattggtatcatactactaatacgtggtagagctgggatccaaaagttaag i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 140320 157 + 1056298 aaagct---ttacaattattaa-----ttaactg--ataatcac-ccaatgaggtaagtacaagtactg-tttcaattttctagac-aagaaaacaggtac--agcacaggtaagtta-----cttccttaaggttacaatgtcaataagtagcacagctctaattaaaaaatcaga i dasNov3.JH570235 C 0 I 158 e saiBol1.JH378157 8927669 6763 - 16357246 I a score=162345.000000 s hg38.chr22_GL383582v2_alt 150495 16 + 162811 cgactggctgcagaga s panTro5.chr22 28930040 16 + 37823149 cgactggctgcagaga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204733 16 + 50109623 cgactggctgcagaga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227793 16 + 4464012 cgactggctgcagaga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106720938 16 - 115148730 caactggctgcagaga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339674 16 + 92844088 ggactggctgcagaga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87686040 16 - 96509753 ggactggctgcagaga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7183229 16 - 13098629 ggactggctgcagaga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142606 16 - 4483953 ggactggctgcagaga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24772701 16 + 33263144 ggactggctacagaga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14056782 16 - 14338769 ggactggctgcagaga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 994173 16 + 1946073 ggactggctgcagaga i colAng1.NW_012115588v1 C 0 I 3 s calJac3.chrUn_GL286373 2018215 16 - 2117846 tgaccagctgcaaaga i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1413457 16 - 1807191 tgaccagctgcaaaga i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 44327 16 - 704494 tgacccgctgcaaaga i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5145883 15 - 6317780 -agctggctgcaaaga i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36353952 15 - 42659167 -agctggctgcaaagg i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46158418 9 - 69331447 tagttggct------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 140635 16 + 1056298 CAGGTAGCTGTGGAGA i dasNov3.JH570235 I 158 C 0 e saiBol1.JH378157 8927669 6763 - 16357246 I a score=95914.000000 s hg38.chr22_GL383582v2_alt 150511 10 + 162811 tcatgctct---A s panTro5.chr22 28930056 10 + 37823149 tcatgctct---A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204749 10 + 50109623 tcatgctct---A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227809 10 + 4464012 tcgtgctct---A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106720954 10 - 115148730 tcatgctct---A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339690 10 + 92844088 ccacactct---A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87686056 10 - 96509753 ccacactct---A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7183245 10 - 13098629 ccacactct---A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142622 10 - 4483953 ccacactct---A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24772717 10 + 33263144 ccacactct---A i chlSab2.chr19 C 0 I 308 s manLeu1.NW_012102031v1 14056798 10 - 14338769 ccacactct---A i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2018231 10 - 2117846 ccatgctct---A i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1413473 10 - 1807191 ccatgctct---A i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 44343 10 - 704494 ccatgctct---A i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5145898 10 - 6317780 ccatgctct---A i proCoq1.NW_012136747v1 C 0 C 0 s otoGar3.GL873526 36353967 13 - 42659167 ccatgctctGACA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46158427 7 - 69331447 ---tgctct---a i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 140651 10 + 1056298 CCATGCACA---A i dasNov3.JH570235 C 0 C 0 e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 994189 3 + 1946073 I a score=649404.000000 s hg38.chr22_GL383582v2_alt 150521 65 + 162811 GATA---------GTGAGTCTTAAAGCACCCACCAACCAATACCACCTGG-TTTACCCAAACAATTCAGGCATCT s panTro5.chr22 28930066 65 + 37823149 GATA---------GTGAGTCTTAAAGCACCCACCAACCAATACCACCCGG-TTTACCCAAACAATTCAGGCATCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204759 65 + 50109623 GATA---------GTGAGTCTTAAAGCACCCACCAACCAATACCACCCGG-TTTACCCAAACAATTCAGGCATCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227819 65 + 4464012 GATA---------GTGAGTCTTAAAGCACCCACCAACCAACACCACCCGG-TTTACCCAAACAATTCAGGCATCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106720964 65 - 115148730 GATA---------GTGAGTCTTAAAGCACCCACCAACCAACACCACCTGG-TTTACCCAAACAATTCAGGCATCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339700 65 + 92844088 GATA---------GTGAATCGTAAAGCACCCATCAACCAACACCACATGG-TTTACCTGAACAATTCAGGCATCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87686066 65 - 96509753 GATA---------GTGAATCGTAAAGCACCCATCAACCAACACCACATGG-TTTACCTGAACAATTCAGGCATCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7183255 65 - 13098629 GATA---------GTGAATCGTAAAGCACCCATCAACCAACACCACATGG-TTTACCTGAACAATTCAGGCATCT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142632 65 - 4483953 GATA---------GTGAATCTTAACGCACCCATCAACCAATACCACATGG-TTTACCTGAACAATTCAGGCATCT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24773035 65 + 33263144 GATA---------GTGAATCTTAAAGCACCCATCAACCAACACCACATGG-TTTACCTGAACAATTCAGGCATCT i chlSab2.chr19 I 308 C 0 s manLeu1.NW_012102031v1 14056808 65 - 14338769 GATA---------GTGAATCTTAAAGCACCCATCAACCAATACCACATGG-TTTACCTGAACAATTCAGGCATCT i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2018241 65 - 2117846 GACA---------GTGAACCTTAAAGCATCTACCAACTAACACCACGTGG-TTTACCCAACCAATTCAGGCATCT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1413483 65 - 1807191 GATA---------GTGAACCTTAAAGCACCCACCAACTAACACCACATGG-TTTACCCAATCAATTCAGGCATCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 44353 65 - 704494 GATA---------GTGAACCTTAAAGCACCCACCAACTAACACCACATGG-TTTACCCAACCAATTCAGGCATCT i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5145908 66 - 6317780 GACA---------GTGAATCTCGGAGCATCTGCCAACCAACACCACGTGGTTTTACCCAACCAGTTCAGCCATCT i proCoq1.NW_012136747v1 C 0 I 43 s otoGar3.GL873526 36353980 65 - 42659167 GACA---------GTGAATCTAGAAGGACCTGCCAACCAACACTACATGG-GTTACCCAACCAAGGCAGCCATCT i otoGar3.GL873526 C 0 I 1 s canFam3.chr10 46158434 74 - 69331447 gaTACGGTTTCTTGGGTTTCTTGAAGCGCCCTCCAACAAACACTACATGG-GCTACCCAACCAGTTCTGCCATCT i canFam3.chr10 C 0 I 5 s dasNov3.JH570235 140661 55 + 1056298 GCTA---------CTGATTCTTGAAGAATCCTTCAACTGACATTATTTGC-TTTGTGCTACCACT---------- i dasNov3.JH570235 C 0 C 0 e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 994189 3 + 1946073 I a score=299161.000000 s hg38.chr22_GL383582v2_alt 150586 43 + 162811 TAAC--AGTGTCA--CACAGAGACATAAACAATAATACAGTATAATA s panTro5.chr22 28930131 43 + 37823149 TAAC--AGTGTCA--CACAGAGACATAAACAATAATACAGTATAATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204824 43 + 50109623 TAAC--AGTGTCA--CACAGAGACATAAACAATAATACAGTATAATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227884 43 + 4464012 TAAC--AGTGTCA--CACAGAGACATAAACAATAATACAGTATAATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106721029 43 - 115148730 TAAC--AGTGTCA--CACAGAGACATAAACAATAATACAGTGTAACA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339765 40 + 92844088 TAAC--AGTGTCA--CACAGAGACATAAACAATAATACAGT---ATA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87686131 40 - 96509753 TAAC--AGTGTCA--CACAGAGACATAAACAATAATACAGT---ATA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7183320 40 - 13098629 TAAC--AGTGTCA--CACAGAGACATAAACAATAATACAGT---ATA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142697 40 - 4483953 TAAC--AGTGTCA--CACAGAGACATAAACAATAATATAGT---ATA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24773100 40 + 33263144 TAAC--AGTGTCA--CACAGAGACATAAACAATAATACAGT---ATA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14056873 40 - 14338769 TAAC--AGTGTCA--CACAGAGACATTAACAATAATATAGT---ATA i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2018306 40 - 2117846 TAAC--AGTGTCA--CACAGAGATATAAACAATAATATAGT---AAC i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1413548 40 - 1807191 TAAC--AGTGTCA--CACGGAGACATAAGCAGTAATATAGT---AAC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 44418 40 - 704494 TAAC--AGTGTCA--CACAGAGACATAAACAATAATATAGT---AAC i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36354046 40 - 42659167 TTACTGAGTGTTA--CAGAGAGTCGCAAG--AGAATATAGT---GTA i otoGar3.GL873526 I 1 C 0 s canFam3.chr10 46158513 42 - 69331447 TCACTCAGCGTCA--CAGTGACATGTAAACAAGACCAGAGT---GTA i canFam3.chr10 I 5 C 0 s dasNov3.JH570235 140716 32 + 1056298 -----TAGT-TCAGTCACTGAAACATAAAT-ATACTGTA-------- i dasNov3.JH570235 C 0 C 0 e proCoq1.NW_012136747v1 5145974 43 - 6317780 I e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 994189 3 + 1946073 I a score=667564.000000 s hg38.chr22_GL383582v2_alt 150629 60 + 162811 GTATCACTCACCATATGGTCACTTGTTT---CAAGGTTAATGTTAGAA-TAACATGA-----GTCCATG s panTro5.chr22 28930174 60 + 37823149 GTATCACTCACCATATGGTCACTTGTTT---CAAGGTTAATGTTAGAA-TAGCATGA-----GTCCATG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204867 60 + 50109623 GTATCACTCACCATATGGTCACTTGTTT---CAAGGTTAATGTTAGAA-TAGCATGA-----GTCCATG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227927 60 + 4464012 GTATCACTCACCATATGGTCACTTGTTT---CAAGGTTAATGTCAGAA-TAACATGA-----GTCCATG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106721072 61 - 115148730 GTATCTCTCACCATATGGTCACTTGTTT---CAAGGTTAATGTTAGAATTAACATGA-----GTCCATG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339805 60 + 92844088 GTATCTCTCACTGTTCGGTCACTTGTTT---CAAGGTTAATGTTAGAA-TAATATGA-----GTCCATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87686171 60 - 96509753 GTATCTCTCACTGTTCGGTCACTTGTTT---CAAGGTTAATGTTAGAA-TAACATGA-----GTCCATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7183360 60 - 13098629 GTATCTCTCACTGTTCGGTCACTTGTTT---CAAGGTTAATGTTAGAA-TAACATGA-----GTCCATG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142737 60 - 4483953 GTATCTCTCACTGTTCGGTCACTTGTTT---CAAGGTTAATGTTAGAA-TCACATGA-----GTCCATG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24773140 60 + 33263144 GTATCTCTCACTGTTCGGTCACTTGTTT---CAAGGTTAATGTTAGAA-TAACATGA-----GTCCATG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14056913 60 - 14338769 GTATCTCTCACTGTTCGGTCACTTGTTT---CCAGGTTAATGTTAGAA-TAACATGA-----GTCCATG i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2018346 60 - 2117846 ATGTCTCTCATCGTATTGTCACTTGTTT---CAAGGTTAATGTTAGAA-TAACATGA-----GTTCGTG i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1413588 60 - 1807191 ACATCTCTCACCGTATTGTCACTTGTTT---CAAGGTTAATGTTAGAA-TAGCATGA-----GTTCATG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 44458 60 - 704494 ACATCTCTCACTGTATTGTCACTTGTTT---CAAGGTTAATGTCAGAA-TATCACGA-----GTTCATG i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5146017 63 - 6317780 GTACCTCTCACCCTATGGTTACTTGTTTCAACAAGGTTAAGGTTAGAA-TAGCATGA-----GTCCATG i proCoq1.NW_012136747v1 I 43 C 0 s otoGar3.GL873526 36354086 60 - 42659167 GTATCTCTCACCTTATGGTCATTTGTTT---CAAGGTTAATGTTAGAA-AGACATGA-----GTCCATG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46158555 60 - 69331447 GTGTCTCTCACCTTACGGTCACTTGTTT---CCAGGTGAATGTCAGGA-TAACATGC-----ACTCATG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 140748 65 + 1056298 GTATCTCCCAACTTATAGTCACTTGTTT---CAAGGTTAATGTTAAAA-TAACTTgaccattatccatg i dasNov3.JH570235 C 0 I 188 e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 994189 3 + 1946073 I a score=1802554.000000 s hg38.chr22_GL383582v2_alt 150689 195 + 162811 AAAATAAGACCTTGTTTTCTGTTTACAGTAAT-ACAGACTAAATAA-----CT-GCACAAAAAACTGGATACAATATATAT----A--CATCTTTCCAAAAGTAACAA--------AAATCTAACAAGATAGTGAGATATTACCAAATTAATATCCTGAAAAAGATGGAAATCCAAAGAAAGAGGCAAGACCTGGGGGC----------ATTTGTTGATTTGCCAG s panTro5.chr22 28930234 195 + 37823149 AAAATAAGACCTTGTTTTCTGTTTACAGTAAT-ACAGACTAAATAA-----CT-GCACAAAAAACTGGATACAATATATAT----A--CATCTTTCCAAAAGTAACAA--------AAATCTAACAAGATAGTGAGATATTACCAAATTAATATCCTGAAAAAGATGGAAATCCAAAGAAAGAGGCAAGACCTGAGGGC----------ATTTGTTGATTTGCCAG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41204927 195 + 50109623 AAAATAAGACCTTGTTTTCTGTTTACAGTAAT-ACAGACTAAATAA-----CT-GCACAAAAAACTGGATACAATATATAT----A--CATCTTTCCAAAAGTAACAA--------AAATCTAACAAGATAGTGAGATATTACCAAATTAATATCCTGAAAAAGATGGAAATCCAAAGAAAGAGGCAAGACCTGGGGGC----------ATTTGTTGATTTGCCAG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3227987 195 + 4464012 AAAGTAAGACCTTGTTTTCTGTTTACAGTAAT-ACAGACTAAATAA-----CT-GCACAAAAAACTGGATACAATATATAT----A--CATCTTTCCAAAAGTAACAA--------AAATCTAACAAGATAGTGAGATATTACCAAATTAATATCCTGAAAAAGATGGAAATCCAAAGAAAGAGGCAAAACCTGGGGGC----------ATTTGTTGATTTGCCAG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106721133 199 - 115148730 AAAATAAGACCTTGTTTTCTGTTTACAGTAAT-ATGGACTAAGTAA-----CT-GGACAAAAAACTGGATACAATATATATACACA--CATCTTTCCAAAAGTAACAA--------AAATCTAACAAGATAGTGAGATATTATCAGATTAATATCCTGAAAAAGATGGAAATCCAAAGAAAGAGGCAAGACCTGGGGGC----------ATTTGTTGATTTGCCAG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84339865 190 + 92844088 AAAATAAGATCTTGTTTT--GTTTGCAGTAAT-ATGGACTAAATAA-----TT-GGACAAAAAACTGGATATAATATAT------A--CATATTTCTAAAAGTAACAA--------AAATCTAACAAGATAGTGAGGTATTACCAAATTAATATCCTGAAAAGGATGGAAATCCAAAGAAAGAGGCAAGACCTG-GGGC----------ATCTGTTGATTTGCCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87686231 190 - 96509753 AAAATAAGATCTTGTTTT--GTTTGCAGTAAT-ATGGACTAAATAA-----TT-GGACAAAAAACTGGATATAATATAT------A--CATATTTCTAAAAGTAACAA--------AAATCTAACAAGACAGTGAGGTATTACCAAATTAATATCCTGAAAAGGATGGAAATCCAAAGAAAGAGGCAAGACCTG-GGGC----------ATCTGTTGATTTGCCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7183420 190 - 13098629 AAAATAAGATCTTGTTTT--GTTTGCAGTAAT-ATGGACTAAATAA-----TT-GGACAAAAAACTGGATATAATATAT------A--CATATTTCTAAAAGTAACAA--------AAATCTAACAAGATAGTGAGGTATTACCAAATTAATATCCTGAAAAGGATGGAAATCCAAAGAAAGAGGCAAGACCTG-GGGC----------ATCTGTTGATTTGCCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142797 192 - 4483953 AAAATAAGATCTTGTTTTCCGTTTGCACTAAT-ATGGACTAAATAA-----TT-GGACAAAAAACTGGATATAATATAC------A--CATATTTCTAAAAGTAACAA--------AAATCTAACAAGATAGTGAGGTATTACCAAATTAATATCCTGAAAAGGATGGAAATCCAAAGAAAGAGGCAAGACCTG-GGGC----------ATCTGTTGATTTGCCAG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24773200 190 + 33263144 AAAAT-AGATTTTGTTTTCTGTTTGCAGTAAT-ATGGACTAAATAA-----TT-GGACAAAAAACTGGATATAATATAT------A--CATCTTTCTAAAAGTAAC-A--------AAATCTAACAAGATAGTGAGGTATTACCAAATTAATATCCTGAAAAGGATGGAAATCCAAAGAAAGAGGCAAGACCTG-GGGC----------ATCTGTTGATTTGCCAG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14056973 192 - 14338769 AAAATAAGATCTTGTTTTCCGTTTGCACTAAT-ATGGACTAAATAA-----TT-GGACAAAAAACTGGATATAATATAT------A--CATATTTCTAAAAGTAACAA--------AAATCTAACAAGATAGTGAGGTATTACCAAATTAATATCCTGAAAAGGATGGAAATCCAAAGAAAGAGGCAAGACCTG-GGGC----------ATCTGTTGATTTGCCAG i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2018406 180 - 2117846 AAAATAAGATGTTATTTTCTGTTTGCAGTAAT-ATGTAGTAAATAA-----TG-TGAC-AAAAATTAGATGCAATATATAT----A--CATCTTTCTAAGAGTAACAA--------AAATCTAACAAGATAATGAGGTATTACCAAATT--------------AATGAAAATACAAAGAAAGAGGCAAGACCTGGGGGC----------ATTTCTTGATTTGCCAG i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1413648 189 - 1807191 AAAATAAGATCTCATTTTCTGTTTACAGTAAC-ATGTACTAAATAA-----TC-TGAC-AAAAATTAGATGTAATATATAT----A--AATCTTTCTAAGAGTAACAA--------AAATCTAACAAGATAATGAGGTATTACCAAATTAAAATCCAGGTAA-AATGAAAATACAAAGAAAGAGGCAAGACCTGGGGAC----------A----TTGATTTGCCAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 44518 194 - 704494 AAAATAAGATCTCATTTTCTGTTTGCAGTAAT-ATGTACTAAATAA-----TT-TGACAAAAAATTAGATGCAATATATAT----A--CATCTTTCTAAGAGTAACAA--------AAATCTAACAAGATAATGAGGTATTACCAAATTAATATCCAGGTAA-AATGAAAATCCAAAGAAAGAGGCAAGACCTGGGGGC----------ATTTGTTGATTTGCCAG i aotNan1.NW_018512389v1 C 0 C 0 s proCoq1.NW_012136747v1 5146080 191 - 6317780 AAAATACGATCTCATTTT--GTTTCCAATAAT-ATGAACTAAATAA-----TT-TGACAAAAAAATGAATAAAATATAC------A--TGTCTTTTTAAAAGTAACAA--------AAAGCTAACAAGATAGTGAAGTATTACCTAATTAATATCCTGGAAAGAATGGAAATCCAAAGAAAGAGGCAAGACCAGGGGGT----------ATTTGTTGATTTGCCAG i proCoq1.NW_012136747v1 C 0 N 0 s otoGar3.GL873526 36354146 197 - 42659167 -AAATAAGATCTCATTTT--GCTTCCAATAAT-ATGACCTAAATAA-----TC-TGACAAAAAGCTCAATAAAATACAT------ATTTATCCTTTTAACAGTAAAAACACCCCCCAAAACTAATAAGATGGTGAGGTATCACCAAGGTAATATACTGAAAAGAATGGGAATCCAAAGTAAGAGGCAAGAGCAGGGG------------AACATTTGATGTGCCA- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46158615 192 - 69331447 AAAATAAGGTCTCATTTTCTGCATCCAAAAATGATGGACCAAATAACAATGTG-ACACAAAAAACAAGGTAACATACATAT----G--TATTTTTC-AAAAGAAACAA--------AAAATTAACAGGATACGGAGGAATTAC---GTTACTATCCTGGAAAGAACAGAAATCCAAAGTAA----CAAGACCTG-GGGC----------AACTGCTGATCTGCCTG i canFam3.chr10 C 0 I 8 s dasNov3.JH570235 141001 203 + 1056298 GAAATAAGAACTCATGTTCTGCTTCCAAAAATGATGGATAAAGAAA-----TTCAGAGgaaaagctagatgaaatacaaac----a--attttgcttaaaagcaacaa--------aaagctgatgagattgcaaggaattattaagttgatatcctgaaaaaaatggggctccaaagt----ggtgagacctgaaggcctgccctagggtttgctaatctgtaag i dasNov3.JH570235 I 188 C 0 e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 994189 3 + 1946073 I a score=1695345.000000 s hg38.chr22_GL383582v2_alt 150884 202 + 162811 --------TGGAGGCCCAG-AAAGTGCCTGGCTCACTCCAAGGCCTTGC-ACAGGAGATAACTTATAACTCATAACTCAGTAACGCGCTCCTCa-ccc--------c---agcgaacctgtgaactgaggccccatagggctgcatcctaggagtaagactgaagtagaagtaaataagccctcccatggact--cagcttcaaaccatctggatagtccataaaa s panTro5.chr22 28930429 202 + 37823149 --------TGGAGGCCCAG-AAAGTGCCTGGCTCACTCCAAGGCCTTGC-ATAGGAGATAACTTATAACTCATAACTCAGTAACGCGCTCCTCA-CCC--------C---AGCGAACCTGTGAACAgaggccccatagggctgcatcctaggagtaagactgaagtagaagtaaataagccctcccatggact--cagcttcaaaccatctggatagtccataaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41205122 202 + 50109623 --------TGGAGGCCCAG-AAAGTGCCTGGCTCACTCCAAGGCCTTGC-ATAGGAGATAACTTATAACTCATAACTCAGTAACGCGCTCCTCA-CCC--------C---AGCGAACCTGTGAACAgaggccccatagggctgcatcctaggagtaagactgaagtagaagtaaataagccctcccatggact--cagcttcaaaccatctggatagtccataaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3228182 202 + 4464012 --------TGGAGGCCCAG-AAAGTGCCTGGCTCACTCCAAGGCCTTGC-ATAGGAGATAACTTATAACTTGTAACTCAGTAACGTGCTCCTCa-ccc--------c---agcgagcctgtgaactgaggccccatagggctgcatcctaggagtaagactgaagtagaagtaaataagccctcccatggact--cagcttcaaaccatctggatagtccataaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106721332 202 - 115148730 --------TGGAGGCCCAG-AAAGTGCCTGGCTCACTCCAAGGTCTTGC-ATAGGAGATAACTTATAACTCGTAACTCAGTAACGTGCTCCTCa-ccc--------c---agcgaacctgtgaactgaggccccatagggctgcatcctaggagtaagactgaagtagaagtaaataagccctcccatggact--cagcttcaaaccatctggatagtccataaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84340055 205 + 92844088 --------TGGAGGCCCAG-AAAGTGTCTGGCTCACTCCAAGGCCTTGC-ATAGGAGATAACTCATAACTCATAACTCAGTAACATGCTCCTCACCCC--------C---AGCAAACCTGTGAACtgaagccccaaagggctgtatcctaggagtaagattgaaatagaagtaaatcagtcctcccatggactcacagtttcaaaccatccggatagtccagaaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87686421 205 - 96509753 --------TGGAGGCCCAG-AAAGTGTCTGGCTCACTCCAAGGCCTTGC-ATAGGAGATAACTCATAACTCGTAACTCAGTAACGTGCTCCTCACCCC--------C---AGCAAACCTGTGAACtgaagccccaaagggctgtatcctaggagtaagattgaaatagaagtaaatcagtcctcccatggactcacagtttcaaaccatctGGATAGTCCAGAAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7183610 203 - 13098629 --------TGGAGGCCCAG-AAAGTGTCTGGCTCACTCCAAGGCCTTGC-ATAGGAGGTAACTCATAACTCGTAACTCAGTAACGTGCTCCTCGCCCC--------C---AGCGAACCTGTGAACtgaagccccaaagggctgtatcctaggagtaagattgaaatagaagtaaatcagtcctcccatggact--cagtttcaaaccatctggatagtccagaaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4142989 203 - 4483953 --------TGGAGGCCCAG-AAAGTGTCTGGCTCACTCCAAGGCCTTGC-ATAGGAGATAACTCATAACTCATAACTCAGTAACGTGCTCCTCACCCC--------C---AGCGAACCTGTGAACTAAAGccccaaagggctgtatcctaggagtaagattgaaatagaagtaaatcagtcctcccatggact--cagcttcaaaccatctggatagtccagaaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24773390 203 + 33263144 --------TGGAGGCCCAG-ACAGTGTCTGGCTCACTCCAAGGCCTTGC-ATAGGAGATAACTCATAACTCATAACTCAGTAACGTGCTCCTCACCCC--------C---AGCGAACCTGTGAACtgaagccccgaagggctgtatcctaggagtaagattgaaatagaagtaaatcagtcctcccatggact--cagcttcaaaccatctGGATAGTCCAGAAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14057165 203 - 14338769 --------TGGAGGCCCAG-AAAGTGTCTGGCTCACTCCAAGGCCTTGC-ATAGGAGATAACTCATAACTCATAACTCAGTAACGTGCTCCTCACCCC--------C---AGCGAACCTGTGAACTAAAGccccaaagggctgtatcctaggagtaagattgaaatagaagtaaatcagtcctcccatggact--cagcttcaaaccatctggatagtccagaaaa i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2018586 203 - 2117846 --------TGGAGATCCAG-GAAGGGTCCAGCTCTCTCCAAGGCCCTGC-AAAGGAGGTAACTTACAACCCATAACTCAGTAATGTGCTCCCCAgccc--------c---agcaaacctgtgaactgaggccccaatgggctgcatcctaagagtaagaatgaagtagaagtaaatcagcccttccacagact--cagcttcaaatcatctggatagttcagaaaa i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1413837 205 - 1807191 --------TGGAGATCCAG-GAAAGGTCCAGCTCTCTCCAAGGCCTTGC-AAAGGAGGTAACTTACAACCCATAACTCAGTGACGTGCTCCCCACCACCCCCCCCGC---AGCAAACCTGTGAACtgaggccccaaagggctgcatcctaagagtaagaat------gaagtaaatcagcctttccacagact--cagcttcaaatcatctagatagttcagaaaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 44712 203 - 704494 --------TGGAGATTCAG-GAAGGGTCCAGCTCTCTCCAAGGCCCTGC-AAAGGAGGTAACTGACAACCCATAACTCAGTAACGTGCTCCCCACccc--------c---agcaaacctgtgaactgagaccccaaagggctgcatcctaagagtaagaataaagtagaagtaaatcagcccttccacagact--cagcttcaaatcatctggatagttcagaaaa i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36354343 151 - 42659167 ---------GGTGGACGAG---------------------AGGCCTAGC-ATAGGGAG----------------ACTCAGCAACTTGTCT-----TCC--------C---AA-AAACCTGTGAACTGAAGTcccaaagggctgcatcctaggagtaagaatgaactggaagtaatt---------catggact--cagtttcaaataatctggatagtccccaaaa i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46158815 191 - 69331447 --------AAGAAGCCCAGTGACACGGCTGGCCC-TTCCAGTGCCCTGC-ACAGGAAG-------------ATACTCTGTTAGCTGCCCCCTCACCCC--------CCCAACCAAATCAGTAGAttggggccctaca-ggcagcagcctaggagtaagagtgaaatggacagaagtcagccttcgcatgggtt--cagcttcaaa-aacctggttagtccagaaaa i canFam3.chr10 I 8 C 0 s dasNov3.JH570235 141204 180 + 1056298 aggtgggtaagaggtccag-tggctgTCTGGCAGCCCCCAGGGACCTACAAAAGGAGATACTTGGTAACTT--------------TGCT------CTC--------C---TCCAAGTCCACTGACTGGGGTCCTAAAGAGCTGCCTCTGAGCAGTAAGGAT-AAATGGAAG-----------TCCCATAGACT--TAGCTTCGTATCTTCTGGATAGTCCAGAAAA i dasNov3.JH570235 C 0 C 0 e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 994189 3 + 1946073 I a score=513271.000000 s hg38.chr22_GL383582v2_alt 151086 88 + 162811 aact---caaatcttcaac-------------ttttttttttttctgagacagagtcttgctctgtcccccccaggctggagtgcagtggcgccatctcagttc s panTro5.chr22 28930631 85 + 37823149 aact---caaatcttcaac--------------tttttttttttctgagacagagtcttgctctgt--cccccaggctggagtgcagtggcgccatctcagttc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41205324 85 + 50109623 aact---caaatcttcaac--------------tttttttttttctgagacagagtcttgctctgt--cccccaggctggagtgcagtggcgccatctcagttc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3228384 87 + 4464012 aact---caaatcttcaact------------ttttttttttttctgagacagagtcttgctctgt--cccccaggctggagtgcagtggcgccatctcagttc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106721534 86 - 115148730 aact---caaatcttcaac-------------tttttttttttcctgagacacagtcttgctctgt--cccccaggctggagtgcagtggcgccatctcagttc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84340260 99 + 92844088 aact---caaatcttcaactcttttttttttttttttttttgccctgagatggagtcttgctctgt--cccccaggctggagtgcagtggcgccatctcagttc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87686626 99 - 96509753 AACT---CAAATCTTCAACTCttttttttttttttttttttttcctgagatggagtcttgctctgt--cccccaggctggagtgcagtggcgccatctcagttc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7183813 97 - 13098629 aact---caaatcttcaactc--ttttttttttttttttttttcctgagatggagtcttgctctgt--cccccaggctggagtgcagtggcgccatctcagttc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4143192 85 - 4483953 aact---caaatcttcaactt--------------ttttttttcctgagatggagtcttgctctgt--cccccaggctggagtgcagtggcgccatctcagttc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24773593 93 + 33263144 AACT---CAAATCTTCAACTC------tttttttttttttttccctgagatggagtcttgctctgt--cccccaggctggagtgcagtggcgccatctcagttc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14057368 87 - 14338769 aact---caaatcttcaactc------tttttttttt------cctgagatggagtcttgctctgt--cccccaggctggagtgcagtggcgccatctcagttc i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2018789 90 - 2117846 acct---caaatcttcaac---------ttgtgtttatttatttatgagacggagtctcactctgt--tgcccagtctggagtacagtggcacattctcagttc i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1414042 90 - 1807191 acct---caattcttcaac---------ttgtatttatttatttatgagacgaagtctcactctgt--tgcccagtctggagtgcagtgatgcgttttcagttc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 44915 90 - 704494 acct---caaatcttcaac---------ttgtatttatttatttatgagatggagtctcactctgt--tgcccagtctggagtgcagtggcgcgttctcagttc i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36354494 42 - 42659167 aaccccacaaatcttcaac----------------------------------------------t------tagattaaagtg----------atctcggttt i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 141384 38 + 1056298 -------------------------------------------TCTAAAG------------------CCCTCATTTTGGATtaaagtg-----atcctggttt i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46159006 0 - 69331447 C e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 994189 3 + 1946073 I a score=546537.000000 s hg38.chr22_GL383582v2_alt 151174 76 + 162811 act-gcgacctccgcctcccgggttcatacgactctcctgcctcagcctcccaagtagctgggattacaagcacccg s panTro5.chr22 28930716 76 + 37823149 act-gcgacctccgcctcccgggttcatacgactctcctgcctcagcctcccaagtagctgggattacaagcacccg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41205409 76 + 50109623 act-gcgacctccgcctcccgggttcatacgactctcctgcctcagcctcccaagtagctgggattacaagcacccg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3228471 76 + 4464012 act-gcgacctcggcctcccgggttcatacgactctcctgcctcagcctcccaagcagctgggattacaggcacccg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106721620 76 - 115148730 act-gcgacctccgcctcctgggttcacacgactctcctgcctcagcctcccaagtagctgggattacaggcacccg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84340359 76 + 92844088 act-gcgacctccgcctcccgggtttgtacaattctcctgcctcagcctccaaagtagctgggattacaggcaccca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87686725 76 - 96509753 act-gcgacctccgcctcccgggtttgtacaattctcctgcctcagcctccaaagtagctgggattacaggcaccca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7183910 76 - 13098629 act-gcgacctccgcctcccgggtttgtacaattctcctgcctcagcctccaaagtagctgggattacaggcaccca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4143277 76 - 4483953 act-gcgacctccgcctcccgggtttgtacaattctcctgcctcagcctccaaagtagctgggattacaggcaccca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24773686 76 + 33263144 act-gcgacctccgcctcccgggtttgtacaattctcctgcctcagcctccaaagtagctgggattacaggcaccca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14057455 76 - 14338769 act-gcgacctccgcctccggggtttgtacaattctcctgcctcagcctccaaagtagctgggattacaggcaccca i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2018879 75 - 2117846 act-gcgacctccgtctcccggtttcatataattctcctgcctcaccctcccaagtagctgggattacaggcacct- i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1414132 75 - 1807191 act-gcaacctccgtctcccggtttcatataattctcctgcctcaccctcccaagtagctgggattacaggtacct- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 45005 75 - 704494 act-gtgacctccgtctcccggtttcatataattctcctgcctcaccctcccaagtagctgggattacaggcacct- i aotNan1.NW_018512389v1 C 0 C 0 s dasNov3.JH570235 141422 34 + 1056298 gctagtgccctcagacacctgga---------------------------aaaagcaaCTG---------------- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46159006 0 - 69331447 C e otoGar3.GL873526 36354536 0 - 42659167 C e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 994189 3 + 1946073 I a score=480162.000000 s hg38.chr22_GL383582v2_alt 151250 66 + 162811 ccatcacgcccggctaatttctgtatttttagtaaggagggggtttcaccatgttggccaggctgg s panTro5.chr22 28930792 66 + 37823149 ccatcacgcccgcctaatttctgtatttttagtaaggagggggtttcaccatgttggccaggctag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41205485 66 + 50109623 ccatcacgcccgcctaatttctgtatttttagtaaggagggggtttcaccatgttggccaggctag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3228547 66 + 4464012 ccatcacgcccggctaatttctgtatttttagtaaggagggggtttcaccatgttggccaggctgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106721696 66 - 115148730 ccatcatgcccggctaatttttgtatttttagtaaggagggggtttcaccatgttggccaggctgg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84340435 66 + 92844088 ccatcacgcctggctaatttttgtatttttagtaaggagggggtttcaccatgtcggccagggtgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87686801 66 - 96509753 ccatcacgcctggctaatttttgtatttttagtaaggagggggtttcaccatgtcggccagggtgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7183986 66 - 13098629 ccatcacgcctggctaatttttgtatttttagtaaggagggggtttcaccatgtcggccagggtgg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4143353 66 - 4483953 ccatcatgcctggctaatttttgtatttttagtaaggaggggatttcaccatgtcggccagggtgg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24773762 66 + 33263144 ccatcatgcctggctaatttttgtatttttagtaaggagggggtttcaccatatcggccagggtgg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14057531 66 - 14338769 ccatcatgcctggctaatttttgtatttttagtaaggaggggatttcaccatgtcggccagggtgg i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2018954 63 - 2117846 ---tcatgccaggctaatttttgtatttttagtagagatagggtttcaccatgttggtcaggctgc i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1414207 63 - 1807191 ---tcatgccaggctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggctga i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 45080 63 - 704494 ---tcatgccaggctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggctga i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 141456 0 + 1056298 C e canFam3.chr10 46159006 0 - 69331447 C e otoGar3.GL873526 36354536 0 - 42659167 C e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 994189 3 + 1946073 I a score=689703.000000 s hg38.chr22_GL383582v2_alt 151316 99 + 162811 tctcgaactcctgacctcagctgatctgcctgcctcagtctcccaaagtgctctgggattacaggccttagccagcgcgcctgggcttcaacttgtatt s panTro5.chr22 28930858 99 + 37823149 tctcgaactcctgacctcagctgatctgcctgcctcagtctcccaaagtgctctgggattacaggccttagccaccgcgcctgggcttcaacttgtatt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41205551 99 + 50109623 tctcgaactcctgacctcagctgatctgcctgcctcagtctcccaaagtgctctgggattacaggccttagccaccgcgcctgggcttcaacttgtatt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3228613 99 + 4464012 tctcgaactcctgacctcagctgatctgcctgcctcagtctcccaaagtgctctgggattacaggccttagccaccgtgcctgggcttcaacttgtatt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106721762 99 - 115148730 tctcgaactcctgacctcaggtgatctgcctgcctcagtctcccaaagcgctctgggattacaggccttagccaccacgcctgggcttcaacttgtatt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84340501 98 + 92844088 tctcgaactcctgacctcaggtgttctgcctgcctctgtctcccaaagtgctc-gggattacaggtgttagccaccgcgcctgggcttcaacttgtatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87686867 99 - 96509753 tctcgaactcctgacctcaggtgttctgcctgcctctgtctcccaaagtgctctgggattacaggtgttagccaccgcgcctggGCTTCAACTTGTATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7184052 99 - 13098629 tctcgaactcctgacctcaggtgttctgcctgcctctatctcccaaagtgctctgggattacaggtgttagccaccgcgcctgggcttcaacttgtatt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4143419 99 - 4483953 tctcgaactcctgacctcaggtgttctgcctgcctctgtctcccaaagtgctctgggattacaggtgttagccaccacgcctgggcttcaacttgtatt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24773828 99 + 33263144 tctcgaactcctgacctcaggtgttctgcctgcctctgtctcccaaagtgctctgggattacaggtgttagccaccacgcctggGCTTCAACTTGTATT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14057597 99 - 14338769 tctcgaactcctgacctcaggtgttctgcctgcctctgtctcccaaagtgctctgggattacaggtgttagccaccgcgcctgggcttcaacttgtatt i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2019017 96 - 2117846 tcttgaactcctgacctcag-caatctgcccgccttggcctcccaaagtgct--gggattataggcattagccaccatgcttggctttcaacttgtatt i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1414270 96 - 1807191 tcttaaactcctgacctcag-cgatctgcctgccttggcctcccaaagtgct--gggattataggcgtgagccaccatgcttggcctttaacttgtatt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 45143 96 - 704494 tcttgaactcctgacctcag-cgatctgcctgccttggcctcccaaagtgct--gggattataggtgtgaaccaccatgcttggccttcaacttgtatt i aotNan1.NW_018512389v1 C 0 C 0 s canFam3.chr10 46159006 22 - 69331447 tctcaaactc-----------------------------------------------------------------------------tcgacttggatt i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 141456 0 + 1056298 C e otoGar3.GL873526 36354536 0 - 42659167 C e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 994189 3 + 1946073 I a score=114682.000000 s hg38.chr22_GL383582v2_alt 151415 16 + 162811 aaaatgatcctcgttg s panTro5.chr22 28930957 16 + 37823149 aaaatgatcctcgttg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41205650 16 + 50109623 aaaatgatcctcgttg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3228712 16 + 4464012 aaaatgatcctcgttg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106721861 16 - 115148730 aaaatgatcctcgttg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84340599 16 + 92844088 aaaatgatccttattg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87686966 16 - 96509753 AAAATGATCCTTATTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7184151 16 - 13098629 aaaatgatccttattg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4143518 16 - 4483953 aaaatgatccttattg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24773927 16 + 33263144 AAAATGACCCTTATTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14057696 16 - 14338769 aaaatgatccttattg i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2019113 16 - 2117846 aaaatgatcctgttct i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1414366 16 - 1807191 aaaatgatcctgttct i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 45239 16 - 704494 aaaatgatcctgctct i aotNan1.NW_018512389v1 C 0 C 0 s canFam3.chr10 46159028 16 - 69331447 aacgtgatcctagttt i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 141456 11 + 1056298 AAAATCATCCT----- i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36354536 0 - 42659167 C e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 994189 3 + 1946073 I a score=1026800.000000 s hg38.chr22_GL383582v2_alt 151431 111 + 162811 gctagtgccgtcagtcacctggaaaaag-------acatc-------------a-cacccaaagcctctaattatttctataaacaatttttc-aaataccatgtccagcacacaaaca--tatga----acaaagtac s panTro5.chr22 28930973 111 + 37823149 gccagtgccgtcagtcacctggaaaaag-------acatc-------------a-cacccaaagcctctaattatttctataaacaatttttc-aaataccatgtccagcacacaaaca--tatga----acaaagtac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41205666 111 + 50109623 gccagtgctgtcagtcacctggaaaaag-------acatc-------------a-cacccaaagcctctaattatttctataaacaatttttc-aaataccatgtccagcacacaaaca--tatga----acaaagtac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3228728 111 + 4464012 gctagtgctgtcagtcacctggaaaaag-------acatc-------------a-cacccaaagcctctaattatttctataaacaatttttc-aaataccatgtccagcacacaaaca--tatga----acaaagtac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106721877 107 - 115148730 gctagtgccgtcagtcacctggaaaaag-------acatc-------------a-cacgcaaagcctc----tatttctataaacaatttttc-aaataccatgtccagcacacaaaca--tatga----acaaagtac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84340615 111 + 92844088 gctagtgcggtcagtcacctggaaaaag-------acatc-------------a-cactcaaagcctctaattatttctataaacaatttttc-aaataccatatctagcacacaaaca--tatga----acaaagtac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87686982 111 - 96509753 GCTAGTGCGGTCAGTCACctggaaaaag-------acatc-------------a-cactcaaagcctctaattatttctataaacaatttttc-aaataccatatctagcacacaaaca--tatga----acaaagtac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7184167 107 - 13098629 gctagtgcggtcagtcacctggaaaaag-------acatc-------------a-cactcaaagcctc----tatttctataaacaatttttc-aaataccatatctagcacacaaaca--tatga----acaaagtac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4143534 107 - 4483953 gctagtgcggtcagtcacctggaaaaag-------acatc-------------a-cactcaaagcctc----tatttctataaacaatttttc-aaataccatatctagcacacaaaca--tatga----acaaagtac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24773943 111 + 33263144 GCTAGTGCGGTCAGTCACctggaaaaag-------acatc-------------a-cactcaaagcctctaattatttctataaacaatttttc-aaataccatatctagcacacaaaca--tatga----acaaagtac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14057712 107 - 14338769 gctagtgcggtcagtcacctggaaaaag-------acatc-------------a-cactcaaagcctc----tatttctataaacaatttttc-aaataccatatctagcacacaaaca--tatga----acaaagtac i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2019129 110 - 2117846 gctagtgccgttagtcacctggaaaaag-------acatc-------------a-cacccaaagtctctaatt-tttccataaagaagttttc-aagtaccacatccagcacacaaaca--tatga----acaaagtac i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1414382 110 - 1807191 gctagtgccgtcagtcacctggaaaaag-------acgtc-------------a-cacccaaagtctctaatt-tttccataaagaagttttc-aagtaccacatccaacacacaaata--tatga----acaaagtac i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 45255 110 - 704494 gctagtgccgttagtcacctggaaaaag-------acatc-------------a-cacccaaagtctctaatt-tttccataaagaagttttc-aagtaccatgcctagcacacaaaca--tatga----acaaagtac i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36354536 112 - 42659167 gctagtgctctccggcacctggaaacgg-------acatc-------------atcacccaaagcttc----tatttctataaataatgtttc-aaatgccatgtctagcacagaaata--tatgaatagataaaacac i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46159044 133 - 69331447 gctagtcccctcaggcacctggaaaaagcaaataaaaatccattttggaaaaga-catcgaaggcctctaattatttctataaataatgtttc-aaataccatgtccagcacacaaacaagaatag----acaaaacac i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 141467 86 + 1056298 -------------------TGGAAAAAG-------ACACC-------------ATCACCCAGGGCCTATAATTACTTCTATAAATAATATTTCAAAATACCATGTTCAGTACACAgaca--gaaaa----g-------- i dasNov3.JH570235 C 0 C 0 e saiBol1.JH378157 8927669 6763 - 16357246 I e colAng1.NW_012115588v1 994189 3 + 1946073 I a score=2432994.000000 s hg38.chr22_GL383582v2_alt 151542 246 + 162811 catgagtaagaaccatgagaggcagttatagatccaaaggaactccaaatactggagatatca---ggagactataaaagaattatatttagtatgttctaggaaataaaag-cgaagtttgaaaaatttagcagggaacaggaatccataaaaaacaatgtagcagacttgaaaagaatcacaactgaaaaatacag-taagatattggtaagaactatccattgagtta-----ttaaattaaaagcagattaa s panTro5.chr22 28931084 246 + 37823149 catgagtaagaaccatgagaggcagttatagatccaaaggaactccaaatactggagatatca---ggagactataaaagaattatatttagtatgttctaggaaataaaag-cgaagtttgaaaaatttagcagggaacaggaatccataaaaaacaatgtagcagacttgaaaaaaatcacaactgaaaaatacag-taagatattggtaagaactatccattgagtta-----ttaaattaaaagcagattaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41205777 246 + 50109623 catgagtaagaaccatgagaggcagttatagatccaaagtaactccaaatactggagatatca---ggagactataaaagaattatatttagtatgttctaggaaataaaag-cgaagtttgaaaaatttagcagggaacaggaatccataaaaaacaatgtagcagacttgaaaaaaatcacaactgaaaaatacag-taagatattggtaagaactatccattgagtta-----ttaaattaaaagcagattaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3228839 246 + 4464012 catgagtaagaaccatgagaggcagttatagatccaaaggaactccaaatactggagatatca---ggagactataaaagaattatatttagtatgttctaggaaataaaaa-cgaagtttgaaaaatttagcagggaacaggaatccataaaaaacaatgtagcagacttgaaaagaatcacaactgaaaaatacag-taagatattagtaagaactatccattgagtta-----ttaaattaaaagcagattaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106721984 241 - 115148730 catgagtaagaaccttgagaggcagttataaatccaaaggaactccaaatactggagatatcg---ggagctgataaaaagactatatttagtatgttctaggaaataaaag-tgaagtttgaaaaatttagcagggaacaggaatccataaaaaacaacgtagccgacttg-----aatcacaactgaaaaatacag-taagatattggtaagaactatccattgagtta-----ttaagttaaaagcagattaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84340726 242 + 92844088 catgagtaagaaccacgagaggcagttatagatccaaaggaactccaaa-actggagatatca---ggcgactataaaagaactatatttagtatgttccaggaaataaaag-tgaagtttgaaaaatttagcaggcaacaggaattcat---aaacaatgtagcagatttaaaaagaatcacaacagaaaaatacag-taagatattggtaagaactatccattgagtta-----ttaaattaaaagcagactaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87687093 242 - 96509753 catgagtaagaaccacgagaggcagttacagatccaaaggaactccaaa-actggagatatca---ggcgactataaaagaactatatttagtatgttccaggaaataaaag-tgaagtttgaaaaatttagcaggcaacaggaattcat---aaacaatgtagcagatttaaaaagaatcacaacagaaaaatacag-taagatattggtaagaactatccattgagtta-----ttaaattaaaagcagactaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7184274 244 - 13098629 catgagtaagaaccacgagaggcagtt-ttgatccaaaggaactccaaa-actggagatagca---ggcgactataaaagaactatatttagtatgttccaggaaataaaag-tgaagtttgaaaaatttagcaggcaacaggaattcataaaaaacaatgtagcagatttaaaaagaatcacaacagaaaaatacag-taagatattggtaagaactatccattgagtta-----ttaaattaaaagcagactaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4143641 245 - 4483953 catgagtaagaaccacgagaggcagttatagatccaaaggaactccaaa-actggagatatca---ggcgactataaaagaactatatttagtatgttccaggaaataaaag-tgaagtttgaaaaatttagcaggcaacaggaattcataaaaaacaatgtagcagatttaaaaagaatcacaacagaaaaatacag-taagatattggtaagaactatccattgagtta-----ttaaattaaaagcagactaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24774054 245 + 33263144 catgagtaagaaccacgagaggcagttatagatccaaaggaactccaaa-actggagatatca---ggcgactataaaagaactatatttagtatgttccaggaaataaaag-tgaagtttgaaaaatttagcaggcaacaggaattcatgaaaaacaatgtagcagatttaaaaagaatcacaacagaaaaatacag-taagatattggtaagaactatccattgagtta-----ttaaattaaaagcagactga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14057819 245 - 14338769 catgagtaagaaccacgagaggcagttatagatccaaaggaactccaaa-actggagatatca---ggcgactataaaagaactatatttagtatgttccaggaaataaaag-tgaagtttgaaaaatttagcaggcaacaggaattcataaaaaacaatgtagcagatttaaaaagaatcacaacagaaaaatacag-taagatattggtaagaactatccattgagtta-----ttaaattaaaagcagactaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 994192 232 + 1946073 CATGAGTAAGAACCATGAGAGGCAGTTatagatccaaaggaactccaaa-actggagataac----------------agaactatatttagtatgttccaggaaataaatg-tgaagtttgaaaaatttagcaggcaacaggaattcataaaaaacaatgtagcagatttaaaaagaatcacaacagaaaaacacag-taagatattggtaagaactatccattgagtta-----ttaaattaaaagcagactac i colAng1.NW_012115588v1 I 3 C 0 s calJac3.chrUn_GL286373 2019239 242 - 2117846 tatgagaaagaaccatga---acagtcagagatccaaaggaactccaaatactggagatatca---ggagactaaaaaacaacta-atttattaagttccaggaaataaaag-caatgtttgaaaaatttaagagggaaaagaaatctataaaaaa-----cagcagatttgaaaagaatcacaattgaaaaatacag-taagatatgggtaagaactatccattgagttattactttaaattaaaagcagattaa i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1414492 243 - 1807191 aatgagaaagaaccatga---gcagttatagatccaaaggaactccaaatactggagatatca---ggagactaaaaaacaactatatttattaagttctaggaaataagag-caatgtttgaaaaatttaacagggaacaggaatctataaaaaa------aaaagatttgaaaaaaatcacaattggaaaatacagttaagatatgggtaagaactatccattgagttattaatttaaattaaaagcagattaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 45365 243 - 704494 tatgagaaagaaccatga---gcagttatagatccaaaggaactccaaatactggagatatca---ggagactaaaaaacaactatatttattaagttctaggaaataaaag-caatgtttgaaaaatttaacagggaataggaatccataaaaaacaa--cagcagatttgaaaagaatcacaattgaaaaatacag-taagatatgggtaagaactatccattgagttattaatttaaattaaa---agattaa i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36354648 234 - 42659167 catgagtaagaaccgtcatatatagtcaaagatcctaaggaattccagctattgaaattatca------gattataaaaaatgtatatttactatgttct-ggaaaaaaaag-ccatgcttgaaaaatttagcaggaaatcggaatctacataaagaaacataatagatttgaaaagaaccaaagcttaaaaatataa-ta-------------aaccctacactgagctcataatttaaattacaaccaaattag i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46159177 234 - 69331447 ----tgtaagaaccatcaaaaacagtcacagacccaaagggactccagataatggaattgaca---gaagattataaaacaactatatttact--gttttagaaaataaaagccaaagcttaaaaaatttagcagagaacaggaatccataaaaagcaatgtagcagattttaaaagaaccaaaactgaaaaatacaa-taagc------------ccattcaccgagttcttaattccaactaaacacagattag i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 141553 240 + 1056298 catgaggaagaaccaacataaatggtcacagacccaaagtgactccagatactgggattatcagaaggagattataaaacaactatatttactgtgttttaggagatacaag-tcaaacttgaaaaattcagcagggaacagtaatccttaagaaatta--caagaatttgaaaaagaaccaaaactgaaaaacataa-taa------------atccatccactgagttattaattttgattaaatgcagactaa i dasNov3.JH570235 C 0 I 42 e saiBol1.JH378157 8927669 6763 - 16357246 I a score=16074.000000 s hg38.chr22_GL383582v2_alt 151788 2 + 162811 tc s panTro5.chr22 28931330 2 + 37823149 tc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206023 2 + 50109623 tc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229085 2 + 4464012 tt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106722225 2 - 115148730 tc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84340968 2 + 92844088 tc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87687335 2 - 96509753 tc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7184518 2 - 13098629 tc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4143886 2 - 4483953 tc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24774299 2 + 33263144 tc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058064 2 - 14338769 tc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 994424 2 + 1946073 tc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2019481 2 - 2117846 ct i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1414735 2 - 1807191 tt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 45608 2 - 704494 tt i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36354882 2 - 42659167 tt i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46159411 2 - 69331447 tc i canFam3.chr10 C 0 I 52 e dasNov3.JH570235 141793 42 + 1056298 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=134958.000000 s hg38.chr22_GL383582v2_alt 151790 18 + 162811 ggct-ggcgcggtggctca s panTro5.chr22 28931332 18 + 37823149 ggct-ggcatggtggctca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206025 18 + 50109623 ggct-ggcatggtggctca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229087 19 + 4464012 ggctgggcgtggtggctca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106722227 19 - 115148730 agctgggtgtggtgggtca i nomLeu3.chr7b C 0 I 43 s rheMac8.chr10 84340970 19 + 92844088 ggctgggcgtggtggctca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87687337 19 - 96509753 ggctcggcgtggtggctca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7184520 19 - 13098629 ggctgggcgtggtggctca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4143888 19 - 4483953 ggctgggcgtggtggctca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24774301 19 + 33263144 ggctgggcgtggtggctca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058066 19 - 14338769 ggctgggcgtggtggctca i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 994426 19 + 1946073 ggctgggcgtggtggctca i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2019483 19 - 2117846 ggctgggtgtggtggctca i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1414737 19 - 1807191 ggccgggtgtggtggctca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 45610 19 - 704494 ggcctggtgtggtggctca i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36354884 3 - 42659167 aaa---------------- i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 141793 42 + 1056298 I e canFam3.chr10 46159413 52 - 69331447 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=278969.000000 s hg38.chr22_GL383582v2_alt 151808 39 + 162811 tacttgtaattccagcactttgggaggctggggcaggtg s panTro5.chr22 28931350 39 + 37823149 tacttgtaattccagcactttgggaggctggggcaggtg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206043 39 + 50109623 tacttgtaattccagcactttgggaggctggggcaggtg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229106 39 + 4464012 tacttgtaattccagcactttgggaggctggggcaggtg i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84340989 39 + 92844088 tacttgtaattccagcactttggaaggttgaggcaggtg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87687356 39 - 96509753 tacttttaattccagcactttggaaggttgaggcaggtg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7184539 39 - 13098629 tacttgtaattccagcactttggaaggttgaggcaggtg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4143907 39 - 4483953 tacttgtgattccagcactttggaaggttgaggcaggtg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24774320 39 + 33263144 tacttgtaattccagcactttggaaagttgaggcaggtg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058085 39 - 14338769 tacttgtaattccagcactttggaaggttgaggcaggtg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 994445 39 + 1946073 tacttgtaattccagcactttggaaggttgaggcaggtg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2019502 39 - 2117846 cacctgtaatcccagcactttgggaggctgacacaagag i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1414756 39 - 1807191 cacctgtaatcccagcactttgggaggctgacacaggag i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 45629 39 - 704494 cacctgtaatcccagcactttgggaggccgacacaggag i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36354887 18 - 42659167 ---------------------gagagatttggttaagtg i otoGar3.GL873526 C 0 I 243 e dasNov3.JH570235 141793 42 + 1056298 I e canFam3.chr10 46159413 52 - 69331447 I e saiBol1.JH378157 8927669 6763 - 16357246 I e nomLeu3.chr7b 106722246 43 - 115148730 I a score=35581.000000 s hg38.chr22_GL383582v2_alt 151847 4 + 162811 gctc s panTro5.chr22 28931389 4 + 37823149 gctc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206082 4 + 50109623 gctc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229145 4 + 4464012 gctc i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84341028 4 + 92844088 gctc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87687395 4 - 96509753 gctc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7184578 4 - 13098629 gctc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4143946 4 - 4483953 gctc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24774359 4 + 33263144 gctc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058124 4 - 14338769 gctc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 994484 4 + 1946073 gctc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2019541 4 - 2117846 gctc i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1414795 4 - 1807191 gctc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 45668 4 - 704494 gctc i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 141793 42 + 1056298 I e canFam3.chr10 46159413 52 - 69331447 I e otoGar3.GL873526 36354905 243 - 42659167 I e saiBol1.JH378157 8927669 6763 - 16357246 I e nomLeu3.chr7b 106722246 43 - 115148730 I a score=1468362.000000 s hg38.chr22_GL383582v2_alt 151851 182 + 162811 acttgaggccaggagttgaagaccagcttggccatcatggtgaaactccatctctact-aaaagtacaaaaattggccaggtgtaggggcacacacctgtggtcccagctactcgagaggttaaggcacaagaactgcttgaacccaggaggcagagggtgcagtgagagccaagatcgtgcc s panTro5.chr22 28931393 182 + 37823149 acttgaggccaggagttcaagaccagcttggccatcatggtgaaactccatctctact-aaaagtacaaaaattggccgggtgtaggggcacacacctgtggtcccagctactcgagaggttaaggcacaagaactgcttgaacccgggaggcagagggtgcagtgagagccaagatcgtgct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206086 182 + 50109623 acttgaggccaggagttcaagaccagcttggccatcatggtgaaactccatctctact-aaaagtacaaaaattggctgggtgtaggggcacacacctgtggtcccagctactcgagaggttaaggcacaagaactgcttgaacccgggaggcagagggtgcagtgagagccaagatcgtgct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229149 182 + 4464012 acttgaggccaggagttcaagaccagcttggccatcatggtgaaactccacctctact-aaaagtacaaaaattggccgggtgtaggggcacacacctgtggtcccagctactcgagaggctaaggcacaagaactgcttgaacccgggaggcggagggtgcagtgagagccaagatcgtgcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106722289 182 - 115148730 attctaggccaggagttcaagaccagcttggccatcatggtgaaactccatctatact-aaaagcacaaaaattggccgggtggaggggcacacacctgtggtcccagctactcgagaggctaaggcacaagaactgcttgaacccgggaggcggagggtgcagtgacagccaagatcgtgcc i nomLeu3.chr7b I 43 C 0 s rheMac8.chr10 84341032 178 + 92844088 atttgaggccaggagttcaagaccagcctggtcatcacggtca----tcatctctact-aaaagtacaaaaattggccagatgtggtagcacacacctatggtcccagctacttgagaggctaaggcacaagaactgcttgaaccaaggaggtggagggtgcagtgagagccaagatcatgcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87687399 178 - 96509753 acttgaggccaggagttcaagaccagcctggtcatcacggtca----tcatctctact-aaaagtacaaaaattggccagatgtggtagcacacacctatggtcccagctacttgagaggctaaggcacaagaactgcttgaaccaaggaggtggagggtgcagtgagagccaagatcatgcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7184582 178 - 13098629 acttgaggccaggagttcaagaccagcctggtcatcacggtca----tcatctctact-aaaagtacaaaaattggccaggtgtggtagcacacacctatggtcccagctacttgagaggctaaggcacaagaactgcttgaaccaaggaggtggagggtgcagtgagagccaagatcatgcc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4143950 178 - 4483953 acttgaggccaggagttcaagaccagcctggtcatcatggtga----tcatctctact-aaaagtacaaaaattggccaggtgtggtagcacacacctatggtcccagctacttgagaggctaaggtacaagaactgcttgagccaaggaggtggagggtgcagtgagagccaagatcatgcc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24774363 177 + 33263144 acttgaggccaggagttcaagaccagcctggtcat-atggtca----tcatctctact-aaaagtacaaaaattggccaggtgtggtagcacacacctatggtcccagctactcgagaggctaaggcacaagaactgcttgaaccaaggaggtggagggtgtagtgagagccaagatcatgcc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058128 178 - 14338769 acttgaggccaggagttcaagaccagcctggtcatcatggtga----tcatctctact-aaaagtacaaaaattggccaggtgtggtagcatacacctatggtcccagctacttgagaggctaacgtacaagaactgcttgagccaaggaggtggagggtgcagtgagagccaagatcatgcc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 994488 178 + 1946073 acttgaggccaggagttcaagaccagcctggtcatcatggtca----ccatctctact-aaaagtacaaaaattggccaggtgtggtagcacacacctatggtcccagctactcgagaggctaaggcacaagaactgcttgaaccaaggaggtggagggtgcagtgagagccaagatcatgcc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2019545 181 - 2117846 acttgaggccagcagttcaagaccagcctagccatcctgatgaaaccccatctctactaaaaaatacaaaaattggccaggtgtgggggtacacgtctgtggtcccagctactcgagaggctgaggcacaagaattgcttgcaaccaggaggtggaggttgcagtg--agccaagatcatgcc i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1414799 181 - 1807191 acttgaggccagtagttcaagaccagcctggccatcctgatgaaacctcatctctactaaaaaatacaaaaattggccaggtgtgggagtacatgtctgcagtcccagctactcgagaggctgaggcacaagaattacttgcaaccgggaggtggaggttgtagtg--agccaagatcatgcc i cebCap1.NW_016107750v1 C 0 I 675 s aotNan1.NW_018512389v1 45672 181 - 704494 acttgaggccagcagttcaagaccagcctggccatcctgatgaaaccccgtctctactaaaaaatacaaaaattggccaggcgtgggggtacacatctgtggtcccagctactcgagaggctgtggcacaaaaattgcttgcaacagggaggtggaggttgcagtg--agccaagatcatgcc i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 141793 42 + 1056298 I e canFam3.chr10 46159413 52 - 69331447 I e otoGar3.GL873526 36354905 243 - 42659167 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=1020891.000000 s hg38.chr22_GL383582v2_alt 152033 153 + 162811 actgcactgcaccccagcctgggcgaaagagtgagactcttgtctc------------aaaaaaacgcagattagtcaaagagaagactgattaact-gaaaacaggtcaaagtaatctacccagaatgaaaaatagaaaag--aaaaaaaacacttgtaatggatgc s panTro5.chr22 28931575 153 + 37823149 actgcactgcaccccagcctgggcgaaagagtgagactcttgtctc------------aaaaaaacgcagattagtcaaagagaagactgattaact-gaaaacaggtcaaagtaatctacccagaatgaaaaatagaaaag--aaaaaaaacacttgtaatggatgc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206268 152 + 50109623 actgcactgcaccccagcctgggcgaaagagtgagactcttgtctc------------aaaaaaacgcagattagtcaaagagaagactgattaact-gaaaacaggtcaaagtaatctacccagaatgaaaaatagaaaag---aaaaaaacacttgtaatggatgc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229331 155 + 4464012 actgcactgcaccccagcctgggcgaaagagtgagactcttgtctc------------aaaaaaacgcagattagtcaaagagaagactgattaact-gaaaacaggtcaaagtaatctacccagaatgaaaaatagaaaagaaaaaaaaaacacttgtaatggatgc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106722471 154 - 115148730 actgcactgcaccccagcctgggcgcaagagtgagactcttgtctc------------aaaaaaacgcagattagtcaaagagaagactgattaact-gaaaacaggtcaaagtaatctatctagaatgaaaaatagaaaag-aaaaaaaaacacttgtaatggatgc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84341210 153 + 92844088 actgcactgcactccagcctgggggaaagagtgagactcttgtctc-------aaaaaaaaaaaaagcagattggtcaaagagaa----gattaatt-gaagacaggtcaaagtaatctacacggaatgaaaaatagaaaag---aaaaaaacacttgtaatggatgc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87687577 153 - 96509753 actgcactgcactccagcctgggggaaagagtgagactcttgtctc-------aaaaaaaaaaaaagcagattggtcaaagagaa----gattaatt-gaagacaggtcaaagtaatctacacggaatgaaaaatagaaaag---aaaaaaacacttgtaatggatgc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7184760 153 - 13098629 actgcactgcactccagcctgggggaaagagtgagactcttgtctc-------aaaaaaaaaaaaagcagattggtcaaagagag----gattaatt-gaagacaggtcaaagtaatctacacggaatgaaaaatagaaaag---aaaaaaacacttgtaatggatgc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144128 152 - 4483953 actgcactgcactccagcctgggggaaagagtgagactcttgtctt--------aaaaaaaaaaaagcagattggtcaaagagaa----gattaatt-gaagacaggtcaaagtaatctacacggaatgaaaaacagaaaag---aaaaaaacacttgtaatggatgc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24774540 153 + 33263144 actgcactgcactccagcctgggggaaagagtgagactcttgtctc------aaaaaaaaaaaaaagcagattggtcaaagagaa----gattaatt-gaagacagttcaaagtaatctacacggaatgaaaaacagaaaag----aaaaaccacttgtaatggatgc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058306 154 - 14338769 actgcactgcactccagcctgggggaaagagtgagactcttgtctc------aaaaaaaaaaaaaagcagattggtcaaagagaa----gattaatt-gaagacaggtcaaagtaatctacacggaatgaaaaacagaaaag---aaaaaaacacttgtaatggatgc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 994666 153 + 1946073 cctgcactgcactctagcctgggggaaagagtgagactcttgtctc-------aaaaaaaaaaaaagcagattggtcaaagagaa----gattaatt-gaagacaggtcaaagtaatctacacggaataaaaaacagaaaag---aaaacaacacttgtaatggatgc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2019726 152 - 2117846 -----acttcactctagcctggacgacagagtaagactcttgtc-----aaaaaaaaaaaaaaaaagcagattagtcaaagagaa----gattaattggaagacacgccaaaataacctacccagaatgaagaacagaaaag--aaaaacaaaacttgtaatggatac i calJac3.chrUn_GL286373 C 0 C 0 s aotNan1.NW_018512389v1 45853 158 - 704494 -----acttcacttcagcctggatgacagagtgagacccttttctttaaaaaaaaaaaaaaaaaaatcagattagtcaaagagaa----gattaattggaagacatgccaaagtaacctacccagaatgaagaacagaaaag-aaaaaacaaaacttgtaatggatac i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 141793 42 + 1056298 I e canFam3.chr10 46159413 52 - 69331447 I e otoGar3.GL873526 36354905 243 - 42659167 I e cebCap1.NW_016107750v1 1414980 675 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=26740.000000 s hg38.chr22_GL383582v2_alt 152186 3 + 162811 cat s panTro5.chr22 28931728 3 + 37823149 cat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206420 3 + 50109623 cat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229486 3 + 4464012 cat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106722625 3 - 115148730 cat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84341363 3 + 92844088 cat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87687730 3 - 96509753 cat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7184913 3 - 13098629 cat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144280 3 - 4483953 cat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24774693 3 + 33263144 cat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058460 3 - 14338769 cat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 994819 3 + 1946073 cat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2019878 3 - 2117846 cat i calJac3.chrUn_GL286373 C 0 C 0 s aotNan1.NW_018512389v1 46011 3 - 704494 cat i aotNan1.NW_018512389v1 C 0 I 521 s otoGar3.GL873526 36355148 3 - 42659167 cct i otoGar3.GL873526 I 243 C 0 e dasNov3.JH570235 141793 42 + 1056298 I e canFam3.chr10 46159413 52 - 69331447 I e cebCap1.NW_016107750v1 1414980 675 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=28983.000000 s hg38.chr22_GL383582v2_alt 152189 4 + 162811 ttaa s panTro5.chr22 28931731 4 + 37823149 ttaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206423 4 + 50109623 ttaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229489 4 + 4464012 ttaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106722628 4 - 115148730 ttaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84341366 4 + 92844088 ttaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87687733 4 - 96509753 ttaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7184916 4 - 13098629 ttaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144283 4 - 4483953 ttaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24774696 4 + 33263144 ttaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058463 4 - 14338769 ttaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 994822 4 + 1946073 ttaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2019881 3 - 2117846 -taa i calJac3.chrUn_GL286373 C 0 I 495 s otoGar3.GL873526 36355151 4 - 42659167 ataa i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 46014 521 - 704494 I e dasNov3.JH570235 141793 42 + 1056298 I e canFam3.chr10 46159413 52 - 69331447 I e cebCap1.NW_016107750v1 1414980 675 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=1471913.000000 s hg38.chr22_GL383582v2_alt 152193 254 + 162811 tcccagcactttaggagg-cttaggcgggcagatcaggaagtcaggagatcgagaccatcctggctaacacagtgaaaccccgtgtctactaaaaatacaaaaaattagccaggcgtggtaataagtgcctgtaagtcccagctactcgggaggccgaggcagaagaatcacttgaacccaggaggcggaggttgcagtgagccgaaatcgcaccaccgcactccagcctgggcgacagagcgagacttcgcctc s panTro5.chr22 28931735 254 + 37823149 tcccagcactttaggagg-cttaggcgggcagatcaggaagtcaggagatcgagaccatcctggctaacacagtgaaaccccgtgtctactaaaaatacaaaaaattagccaggcgtggtaataagtgcctgtaagtcccagctattcgggaggccgaggcagaagaatcacttgaacccaggaggcggaggttgcagtgagccgaaatcgcaccactgcactccagcctgggtgacagagcgagacttcgtctc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206427 254 + 50109623 tcccagcactttaggagg-cttaggcgggcagatcaggaagtcaggagatcgagaccatcctggctaacacagtgaaaccccgtgtctactaaaaatacaaaaaattagccaggcgtggtaataagtgtctgtaagtcccagctattcgggaggccgaggcagaagaatcacttgaacccaggaggcggaggttgcagtgagccgaaatcgcaccactgcactccagcctgggtgacagagcgagacttcgtctc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229493 254 + 4464012 tcccagcactttaggagg-cttaggcgggcagatcaggaggtcaggagatcaaggccatcctggctaacacagtgaaaccccatgtctactaaaaatacaaaaaattagccaggcgtggtaatacgtgcctgtaagtcccagctactcgggaggccgaggtagaagaatcacttgaacccaggaggcggaggttgcagtgagccgaaatcgcaccactgcactccagcctgggcgacagagcgagactttgtctc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106722632 253 - 115148730 tcccagcactttaggagg-cttaggcaggcagatcaggaggtcaggagatcgagaccatgctgggtaacacagtgaaaccccgtgtctactaaaaatacaaaaaattagccaggcgtggtgatacgtgcctgt-agtcccagctactcgggaggccgaggcagaagaatcacttgaacccaggaggcggaggttgcagtgagccgaaatcgcaccactgcactccagcctgggcgacagagagagacttcgtctc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84341370 254 + 92844088 tcccagcactttaggaggatttaggcaggcagatcaggaggtcaggagatcgagaccatcttggctaacacggtgaaaccctgtgtctacttaaaacacaaaaaattagccaggtgtagtgatgcatgcctgt-agttccagttacttgggaggctgaggcaggagaatcgcttgaacctgggaggcggcagttgcagtgagccgagatctcaccactgcgctccagcctggatgacagagtgagaatctgtctc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87687737 254 - 96509753 tcccagcactttaggaggatttaggcaggcagatcaggaggtcaggagatcgagaccatcttggctaacacggtgaaaccctgtgtctacttaaaacgcaaaaaattagccaggtgtggtgatgcatgcctgt-agttccagttacttgggaggctgaggcaggagaatcgcttgaacctgggaggcggcagttgcagtgagccgagatctcaccactgcgctccagcctggatgacagagtgagaatctgtctc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7184920 251 - 13098629 tcccagcacttt---aggatttaggcaggcagatcaggaggtcaggagatcgagaccatcttggctaacacggtgaaaccctgtgtctacttaaaacgcaaaaaattagccaggtgtggtgatgcatgcctgt-agttccagttacttgggaggctgaggcaggagaatcgcttgaacctgggaggcggcagttgcagtgagccgagatctcaccactgcgctccagcctggatgacagagtgagaatctgtctc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144287 253 - 4483953 tcccagcactttaggaggatttaggcaggcagatcaggaggtcaggagatcgagaccatcttggctaacacggtgaaaccctgtgtctccttaaaacgcaaaaaattagccaggtgtggtgatgcatgcctgt-agttccagttacttgggaggctgaggcaggagaatcgcttgaacctgggaggcggcagttgcagtgagccgagatctcaccactgcgctccagcctggatgacag-gtgagaatctgtctc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24774700 254 + 33263144 tcccagcactttaggaggatttaggcaggcagatcaggaggtcaggagatcgagaccatcttggctaacacggtgaaaccctgtgtctacttaaaatgcaaaaaattagccaggtgtggtgatgcatgcctgt-agttccagttacttgggaggctgaggcaggagaatcgcttgaacctgggaggcggcggttgcagtgagccgagatctcaccactgcgctccagcctggatgacagagtgagaatctgtctc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058467 254 - 14338769 tcccagcactttaggaggatttaggcaggcagatcaggaggtcaggagatcgagaccatcttggctaacacggtgaaaccctgtgtctacttaaaacgcaaaaaattagccaggtgtggtgatgcatgcctgt-agttccagttacttgggaggctgaggcaggagaatcgcttgaacctgggaggcggcagttgcagtgagccgagatctcaccactgcgctccagcctggatgacagagtgagaatctgtctc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 994826 254 + 1946073 tcccagcactttaggaggacttaggcaggcagatcaggaggtcaggagatcgacaccatcttggctaacacggtgaaaccctgtgtctactcaaaatgcaaataattagccaggtgtggtgatgcgtgcctgt-agttccagttatttgggaggctgaggcaggagaatcgcgtgaacctgggaggcagcagttgcagtgagccgagatcgcaccactacactccagcctggatgacagagtgagaatccatctc i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36355155 231 - 42659167 ctctagcactttgggagc----------------ctgaagccaaggagttcaagatcgtcctgagcaacacagtgagacacagtctctac-aaaaaagaaaaaacctagctgggtgcagtggtacatgcctgt-agtcacagttacctgagaggctgaagcaggaggactggttgagcccaggagttcaaggttgctatgagctatgattacaacactgcattctagcccaggcaacag------cccctatctc i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 46014 521 - 704494 I e dasNov3.JH570235 141793 42 + 1056298 I e canFam3.chr10 46159413 52 - 69331447 I e cebCap1.NW_016107750v1 1414980 675 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2019884 495 - 2117846 I a score=4095.000000 s hg38.chr22_GL383582v2_alt 152447 1 + 162811 a s panPan2.chr22 41206681 1 + 50109623 a i panPan2.chr22 C 0 C 0 s rheMac8.chr10 84341624 1 + 92844088 a i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87687991 1 - 96509753 a i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185171 1 - 13098629 a i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144540 1 - 4483953 a i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24774954 1 + 33263144 a i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 995080 1 + 1946073 a i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36355386 1 - 42659167 a i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46159465 1 - 69331447 a i canFam3.chr10 I 52 C 0 e aotNan1.NW_018512389v1 46014 521 - 704494 I e dasNov3.JH570235 141793 42 + 1056298 I e cebCap1.NW_016107750v1 1414980 675 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2019884 495 - 2117846 I e manLeu1.NW_012102031v1 14058721 0 - 14338769 C e nomLeu3.chr7b 106722885 0 - 115148730 C e gorGor5.CYUI01015375v1 3229747 0 + 4464012 C e panTro5.chr22 28931989 0 + 37823149 C a score=68854.000000 s hg38.chr22_GL383582v2_alt 152448 24 + 162811 aaaaaaaaaaaaaaaaa----aaa------------------acag s panTro5.chr22 28931989 22 + 37823149 --aaaaaaaaaaaaaaa----aaa------------------tcag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206682 24 + 50109623 aaaaaaaaaaaaaaaaa----aaa------------------tcag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229747 18 + 4464012 ------aaaaaaaaaaa----aaa------------------tcag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106722885 15 - 115148730 ---------aaaaaaag----aaa------------------tcac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84341625 44 + 92844088 aaaaaaaaaaaaaaaaaaaaagaa--gaagaagaaaaagaaatcac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87687992 28 - 96509753 aaaaaaaaaaaaaaaaaaaagaaa------------------tcac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185172 46 - 13098629 aaaaaaaaaaaaaaaaaaaaggaagagaagaataaaaaaatcccac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144541 42 - 4483953 aaaaaaaaaagaagaagaa--gaa--gaagaagaaaaagaaatcac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24774955 40 + 33263144 aaaaaaaaaaaaaagaa----gaa--gaagaagaaaaagaaatcac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058721 39 - 14338769 -aaaaaaaaaaaaagaa----gaa--gaagaagaaaaagaaatcac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995081 40 + 1946073 aaaaaaaaaaaaaagaa----aaa--gaagaagaaaaagaaatcac i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36355387 24 - 42659167 gaaaaaggggaaggaaa----aaG------------------GCAG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46159466 24 - 69331447 aaaaatgaaaagggcaa----aaa------------------atac i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 141835 24 + 1056298 aatgaagaaaaggataa----aag------------------gtac i dasNov3.JH570235 I 42 C 0 e aotNan1.NW_018512389v1 46014 521 - 704494 I e cebCap1.NW_016107750v1 1414980 675 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2019884 495 - 2117846 I a score=668213.000000 s hg38.chr22_GL383582v2_alt 152472 108 + 162811 aaaagaaagg----gtgactac------------------aaggttgaatgtatccctgtatgggtgga-ctcttagaatgagaagggaatggaggcaaggcagtaagtgaggagaagtattgggaatttt s panTro5.chr22 28932011 108 + 37823149 aaaagaaagg----gtgactac------------------aaggttgaatgtatccctgtatgggtgga-ctcttagaatgagaagggaatggaggcaaggcagtaagtgaggagaagtattgggaatttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206706 108 + 50109623 aaaagaaagg----gtgactac------------------aaggttgaatgtatccctgtatgggtgga-ctcttagaatgagaagggaatggaggcaaggcagtaagtgaggagaagtattgggaatttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229765 108 + 4464012 aaaagaaagg----gtgactac------------------aaggttgaatgtatccctgtatgggtgga-ctctcagaatgagaagggaatggaggcaaggcaataagtgaggagaagtattgggaatttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106722900 108 - 115148730 aaaagaaagg----gtgactac------------------aaggttgaacatatccttgtatggttgga-ctcttagaatgagaagggaatggaggcaaggcgataagtgaggagaagtattgggaatttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84341669 108 + 92844088 aaaagaaagg----gtgactaa------------------aaggttgaacatatccctgtatggttgga-ctcttagaatgagaagggaatgaaggcaaggcagtaagtgaggagaattactgggaatttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688020 108 - 96509753 aaaagaaagg----gtgactaa------------------aaggttgaacatatccctgtatggttgga-ctcttagaatgagaagggaatgaaggcaaggcagtaagtgaggagaattactgggaatttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185218 107 - 13098629 aaaagaaa-g----gtgactaa------------------aaggttgaacatatccctgtatggttggacctcttagaa-gagaagggaatgaaggcaaggcagtaagtgaggagaattactgggaatttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144583 108 - 4483953 aaaagaaagg----gtgactaa------------------aaggttgaacatatccctgtatggttgga-ctcttagaatgagaagggaatacaggcaaggcagtaagtgaggagaattactgggaatttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24774995 108 + 33263144 aaaagaaagg----gtgactaa------------------aaggttgaacatatccctgtatggttgga-ctcttagaatgagaagggaatgcaggcaaggcagtaagtgaggagaattactaggaatttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058760 108 - 14338769 aaaagaaagg----gtgactaa------------------aaggttgaacatatccctgtatggttgga-ctcttagaatgagaagggaatgcaggcaaggcagtaagtgaggagaattactgggaatttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995121 108 + 1946073 aaaagaaagg----gtgactaa------------------aaggttgaacatatccctgtatggctgga-ctcttagaatgagaagggaatgcaggcaaggcaataagtgaggagaattactgggaatttt i colAng1.NW_012115588v1 C 0 C 0 s canFam3.chr10 46159490 124 - 69331447 aggagaaaggttaagtgacaaa--aaaaggacacaaagagaaggtctaacacatccatgaa--actgga-gtcttggaattagaa-agaacgagggcaaagcaatatggga-aagaactgctgggaattct i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 141859 113 + 1056298 agaagagagg----gtaaatgacaaaaatggcacagtaacaaggagtaacatat--gtacataactgga-gtctcagaa-----------tggtggtaaggcaatatatgaagagaactgctagaaattct i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 46014 521 - 704494 I e otoGar3.GL873526 36355411 0 - 42659167 C e cebCap1.NW_016107750v1 1414980 675 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2019884 495 - 2117846 I a score=252311.000000 s hg38.chr22_GL383582v2_alt 152580 50 + 162811 ccagaacaaata-agagatatca--ccaaaga-atcaagaatcttggtg-aatac s panTro5.chr22 28932119 50 + 37823149 ccagaacaaata-agagatatca--ccaaaga-atcaagaatcttggtg-aatac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206814 50 + 50109623 ccagaacaaata-agagatatca--ccaaaga-atcaagaatcttggtg-aatac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229873 48 + 4464012 ccagaacaaata---agatatca--ccaaaga-atcaagaatcttggtg-aatac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723008 50 - 115148730 ccagaacaaata-agagatatca--ccaaaga-atcaagaatcttggtg-aatac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84341777 50 + 92844088 ccagaacaaata-agagatacca--ccaaaga-ttcaagaatcttagtg-aatac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688128 50 - 96509753 ccagaacaaata-agagatacca--ccaaaga-ttcaagaatcttagtg-aatac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185325 51 - 13098629 ccagaacaaata-agaaa-acca--ccaaagatttcaagaaTCTTAGTGAAATAC i macNem1.NW_012012688v1 C 0 I 1 s cerAty1.NW_011999588v1 4144691 50 - 4483953 ccagaacaaata-agagatacca--ccaaaga-ttcaagaatcttagtg-aatac i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24775103 47 + 33263144 ccagaacaaata-agagat---a--ccaaaga-ttcaagaatcttagtg-aatac i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058868 50 - 14338769 ccagaacaaata-cgagatacca--ccaaaga-ttcaagaatcttagtg-aatac i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995229 50 + 1946073 ccagaacaaata-agagatacca--ccaaaga-ttcaagaatcttagtg-aatac i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36355411 9 - 42659167 CCTGAACAC---------------------------------------------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46159614 38 - 69331447 ccagaacagcga-agagacacca-gccacaca-ctcgagaa-------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 141972 53 + 1056298 ccagaacagataaagagatatcaagtcacaga-ttcaagaagcttgaca-aaTAT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 46014 521 - 704494 I e cebCap1.NW_016107750v1 1414980 675 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2019884 495 - 2117846 I a score=80910.000000 s hg38.chr22_GL383582v2_alt 152630 11 + 162811 aaaacagATGG s panTro5.chr22 28932169 11 + 37823149 aaaacagATGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206864 11 + 50109623 aaaacagATGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229921 11 + 4464012 aaaacagATGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723058 11 - 115148730 aaaacagATGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84341827 11 + 92844088 aaaacagATGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688178 11 - 96509753 aaaacagATGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185377 11 - 13098629 AAAACAGATGG i macNem1.NW_012012688v1 I 1 C 0 s cerAty1.NW_011999588v1 4144741 11 - 4483953 aaaacagATGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24775150 11 + 33263144 aaaacagATGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058918 11 - 14338769 aaaacagATGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995279 11 + 1946073 aaaacagATGG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2020379 11 - 2117846 aaaCCATATCA i calJac3.chrUn_GL286373 I 495 C 0 s otoGar3.GL873526 36355420 11 - 42659167 AAAGTAAGTGA i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 142025 11 + 1056298 AAAATCAGTGA i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 46014 521 - 704494 I e canFam3.chr10 46159652 0 - 69331447 C e cebCap1.NW_016107750v1 1414980 675 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=407525.000000 s hg38.chr22_GL383582v2_alt 152641 42 + 162811 T-CTCTATTA-TCTAGAATGTC-TTCCAAAAATAACATGAACCTG s panTro5.chr22 28932180 42 + 37823149 T-CTCTATTA-TCTAGAATGTC-TTCCAAAAATAACATGAACCTG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206875 42 + 50109623 T-CTCTATTA-TCTAGAATGTC-TTCCAAAAATAACATGAACCTG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229932 42 + 4464012 T-CTCTATTA-TCTAGAATGTC-TTCCAAAAATAACATGAACCTG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723069 42 - 115148730 T-CTCTATTA-TCTAGAATGTC-TTCCAAAAATAACATGAACCTG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84341838 42 + 92844088 T-CTCTATTA-CCTAGAAGGTC-TTCCAAAAATAACATGAACCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688189 42 - 96509753 T-CTCTATTA-CCTAGAAGGTC-TTCCAAAAATAACATGAACCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185388 43 - 13098629 TCCTCTATTACCCTAGAAGGTC-TTCC-AAAATAACATGAACCTG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144752 42 - 4483953 T-CTCTATTA-CCTAGAAGGTC-TTCCAAAAATAACATGAACCTG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24775161 42 + 33263144 T-CTCTATTA-CCTAGAAGGTT-TTCCAAAAATAACATGAACCTG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058929 42 - 14338769 T-CTCTATTA-CCTAGAAGGTC-TTCCAAAAATAACATGAACCTG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995290 42 + 1946073 T-CTCTATTA-CCTAGAATGTC-TTCCAAAAATAACATGAACCTG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2020390 42 - 2117846 T-CTCTATTA-TCTAGAATATC-CTCCAAAACTGACATGAACCTC i calJac3.chrUn_GL286373 C 0 I 1 s cebCap1.NW_016107750v1 1415655 42 - 1807191 T-CTCTATTA-TCTAGAATATC-TTCCAAAACTGACATGAACCTG i cebCap1.NW_016107750v1 I 675 I 1 s aotNan1.NW_018512389v1 46535 42 - 704494 T-CTCTATTA-TCTAGAATATC-TTCCAAAACTGACATGAACCTG i aotNan1.NW_018512389v1 I 521 I 47 s otoGar3.GL873526 36355431 40 - 42659167 ---TCTCTCT-TCTAGAATGTC-TTCTAAAAATGCCATGAACCTA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46159652 33 - 69331447 ---------g-tccAGAACGTC-TTCTAAAAATGGCACGAACCA- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 142036 44 + 1056298 -CCTTTATCATCCTAGAATGACTTTCTAAAAGTGATATGACCTTT i dasNov3.JH570235 C 0 C 0 e saiBol1.JH378157 8927669 6763 - 16357246 I a score=247672.000000 s hg38.chr22_GL383582v2_alt 152683 49 + 162811 TTCT--GTAAGT----ATAGTACCACCA--CAA----TTAAA----TATCTATTGTGGTCATATT s panTro5.chr22 28932222 49 + 37823149 TCCT--GTAAGT----ATAGTACCACCA--CAA----TTAAA----TATCTATTGTGGTCATATT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206917 49 + 50109623 TCCT--GTAAGT----ATAGTACCACCA--CAA----TTAAA----TATCTATTGTGGTCATATT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3229974 49 + 4464012 TTCT--GTAAGT----ATAGTACCACCA--CAA----TTAAA----TATCTATTGTGGTCATATT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723111 49 - 115148730 TTCT--GTTAGT----ATAGTACCACCA--CAG----TTAAA----TGTCTATTGTGGTCATACT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84341880 42 + 92844088 TTCT--CTCAGT----AC-------CCA--CAG----TTAAA----TATCTACTGTGGTCCTACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688231 42 - 96509753 TTCT--CTCAGT----AC-------CCA--CAG----TTAAA----TATCTACTGTGGTCCTACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185431 47 - 13098629 TTCTCCCTCAGTACCCAC-------CCA--CAG----TTAAA----TATCTACTGT-GTCCTACT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144794 42 - 4483953 TTCT--CTCAGT----AC-------CCA--CAG----TTAAA----TATCTACTGTGGTCCTACT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24775203 42 + 33263144 TTCT--CTCAGT----AC-------CCA--CAG----TTAAA----TATCTATTGTGGTCCTACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14058971 42 - 14338769 TTCT--CTCAGT----AC-------CCA--CAG----TTAAA----TATCTACTGTGGTCCTACT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995332 42 + 1946073 TTCT--CTCAGT----AC-------CCA--CAG----TTAAA----TATCTACTGTGGTCCTACT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2020433 44 - 2117846 TTCT---TTAGT----A--------CCA--CAG----TTAAACAATTATCTACGGTGGTCCTCTA i calJac3.chrUn_GL286373 I 1 I 2 s cebCap1.NW_016107750v1 1415698 44 - 1807191 TTCT---TTAGT----A--------CCA--CAG----TTAAACAATTATCTACTGTGGTCCTCTA i cebCap1.NW_016107750v1 I 1 I 2 s otoGar3.GL873526 36355471 47 - 42659167 TTCT--GTAAAT----ACAATA---TCAGTTAA----TTAAACAAATATCTATTGTGATC----- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46159685 54 - 69331447 CTCT--CTAAGC----ATAGTG---CCA--CAGCTCATTAAACAAGTCTCCACTGAGGTCCTACT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 142080 46 + 1056298 TTAT--TTAAGT----ATAGTG---CTA--CAG----TTAAT----TAAACATTGGCGTGATATC i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 46577 47 - 704494 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=12376.000000 s hg38.chr22_GL383582v2_alt 152732 1 + 162811 A s panTro5.chr22 28932271 1 + 37823149 A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206966 1 + 50109623 A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3230023 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723160 1 - 115148730 A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84341922 1 + 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688273 1 - 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185478 1 - 13098629 A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144836 1 - 4483953 A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24775245 1 + 33263144 A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14059013 1 - 14338769 A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995374 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2020479 1 - 2117846 A i calJac3.chrUn_GL286373 I 2 C 0 s cebCap1.NW_016107750v1 1415744 1 - 1807191 A i cebCap1.NW_016107750v1 I 2 C 0 s aotNan1.NW_018512389v1 46624 1 - 704494 A i aotNan1.NW_018512389v1 I 47 C 0 s canFam3.chr10 46159739 1 - 69331447 A i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 142126 1 + 1056298 A i dasNov3.JH570235 C 0 I 22635 e otoGar3.GL873526 36355518 0 - 42659167 C e saiBol1.JH378157 8927669 6763 - 16357246 I a score=894389.000000 s hg38.chr22_GL383582v2_alt 152733 105 + 162811 GGGGTTATCATAGGGTATACTATATA--GACGAACTT-ACAACACTCTCAGCACGTGAGGAGCT-CAAAGTCAAGGATTTAGAAGAGGTATTTTCAACTGTGAAGATCT s panTro5.chr22 28932272 105 + 37823149 GGGGTTATCATAGGGTATACTATATA--GACGAACTT-ATAACACTCTCAGCACGTGAGGAGCT-CAAAGTCAAGGATTTAGAAGAGGTATTTTCAACTGTAAAGATCT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41206967 105 + 50109623 GGGGTTATCATAGGGTATACTATATA--GACGAACTT-ATAACACTCTCAGCACGTGAGGAGCT-CAAAGTCAAGGATTTAGAAGAGGTATTTTCAACTGCAAAGATCT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3230024 105 + 4464012 GGGGTTATCATAGGGTATACTATATA--GACAAACTT-ATAACACTCTCAGCACGTGAGGAGCT-CAAAGTCAAGGATTTAGAAGAGGTATTTTCAACTGTAAAGATCT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723161 105 - 115148730 GGGGTTATCATAGGGTATACTATATA--GACAAACTT-ATAACATTCTCGGCACGTGAGGAGCT-CAAGGTCAAGGATTTACAAGAGGTATTTTCAACTGTAAAGATCT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84341923 105 + 92844088 GGGGTTATCACAGGGTATACTATATA--GACAAACTT-ATAACACTCTCAGTGTGTGAGGAACT-CAAAGTCAAGGATTTAGGAGAGGTATTTTCAACTGTAAAGATTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688274 105 - 96509753 GGGGTTATCACAGGGTATACTATATA--GACAAACTT-ATAACACTCTCAGTGTGTGAGGAACT-CAAAGTCAAGGATTTAGGAGAGGTATTTTCAACTGTAAAGATTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185479 107 - 13098629 GGGGTTATCACAGGGTATACTATATAGTGACAAACTTGATAAC-CTCTCAGTGTGTGAGGAACTCCAAAGTCAAGGATTTAGGAGAGGTATTTTC-ACTGTAAAGATTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144837 105 - 4483953 GGGGTTATCACAGGGTACACTATATA--GACAAACTT-ATAACACTCTCAGTGTGTGAGGAACT-CAAAGTCAAGGATTTAGAAGAGGTATTTTCAACTGTAAAGATTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24775246 105 + 33263144 GGGGTTATCACAGGGTATACTATATA--GACAAACTT-ATAACACTCTCAGTGTGTGAGGAACT-CAAAGTCAAGGATTTAGAAGAGGTATTTTCAACTGTAAAGATTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14059014 105 - 14338769 GGGGTTATCACAGGGTATACTATATA--GACAAACTT-ATAACACTCTCAGTGTGTGAGGAACT-CAAAGTCAAGGATTTAGAAGAGGTATTTTCAACTGTAAAGATTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995375 105 + 1946073 GGGGTTATCACAGGGTATACTATATA--GACAAACTT-ATAACACTCTGAGCATGTGAGGAACT-CAAAGTCAAGGATTTAGAAGAGGTATTTTCAACTGTAAAGATTT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2020480 102 - 2117846 GGGGTTATCATAGGCTATACTATACG--GGCAAACTT-ACAACACTCTCAGC--GTGAGGAGCT-CAACGTCAAAGATTT-TAAGAGGTATGTTCGACTGTAAACATCT i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1415745 103 - 1807191 GGGGTTATCATAGGCTATACTA-ATA--GGCAAACTT-ATAACATTCTCAGCGTGTGAGGAGCT-CAATGTCAAAGATTT-TAAGAGGTATGTTCAACTGTAAACATCT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 46625 104 - 704494 GGGGTTATCATAGGCTATACTACATA--GACAAACTT-ATAACACTCTCAGCGTGTGCGGAGCT-CAACGTCAAAGATTT-TAAGAGGTATGTTCAACTGTAAACATCT i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36355518 61 - 42659167 ----------------CTACTCTGTA--GACAAATTT-ATAATGCTGCCAGCATATGAGAAGTT-CAAAGTCAAGTACTTA---------------------------- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46159740 89 - 69331447 GGGG--------------AATATAAA--GGCAAAGCG-GGGAC--TCCCAGCATGTGAGGAGTT-CAAAGTTGAGCACTTAGAAGACAGCTGTTAAATCATAATCATCT i canFam3.chr10 C 0 I 5157 e dasNov3.JH570235 142127 22635 + 1056298 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=64550.000000 s hg38.chr22_GL383582v2_alt 152838 7 + 162811 -CTCTACC s panTro5.chr22 28932377 7 + 37823149 -CTCTACC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41207072 7 + 50109623 -CTCTACC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3230129 7 + 4464012 -CTCTACC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723266 7 - 115148730 -CTCTACC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84342028 7 + 92844088 -CCCTACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688379 7 - 96509753 -CCCTACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185586 8 - 13098629 CCCctacc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144942 7 - 4483953 -CCCTACC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24775351 7 + 33263144 -CCCTACC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14059119 7 - 14338769 -CCCTACC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995480 7 + 1946073 -CCCTACC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2020582 7 - 2117846 -CCCTACC i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1415848 7 - 1807191 -CCCTACC i cebCap1.NW_016107750v1 C 0 I 4505 s aotNan1.NW_018512389v1 46729 7 - 704494 -CCCTACC i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e otoGar3.GL873526 36355579 0 - 42659167 C e saiBol1.JH378157 8927669 6763 - 16357246 I a score=9100.000000 s hg38.chr22_GL383582v2_alt 152845 1 + 162811 C s panTro5.chr22 28932384 1 + 37823149 C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41207079 1 + 50109623 C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3230136 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723273 1 - 115148730 C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84342035 1 + 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688386 1 - 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185594 1 - 13098629 c i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144949 1 - 4483953 C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24775358 1 + 33263144 C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14059126 1 - 14338769 C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995487 1 + 1946073 C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2020589 1 - 2117846 C i calJac3.chrUn_GL286373 C 0 I 5413 s aotNan1.NW_018512389v1 46736 1 - 704494 C i aotNan1.NW_018512389v1 C 0 I 5483 e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e otoGar3.GL873526 36355579 0 - 42659167 C e cebCap1.NW_016107750v1 1415855 4505 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=287793.000000 s hg38.chr22_GL383582v2_alt 152846 57 + 162811 ggccaggcgaggtggctc-acacctataat-cccagcactttgggaggctgaggcacg-c-- s panTro5.chr22 28932385 57 + 37823149 ggccaggcaaggtggctc-acacctataat-cccagcactttgggaggctgaggcacg-c-- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41207080 57 + 50109623 ggccaggcaaggtggctc-acacctataat-cccagcactttgggaggctgaggcacg-c-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3230137 57 + 4464012 ggccaggcaaggtggctc-acacctataat-ctcagcactttgtgaggctgaggcagg-c-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723274 57 - 115148730 ggccaggcgaggtggctc-acgcctataat-cccagcactttgggaggctgaggcagg-c-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84342036 57 + 92844088 Agccagggaaggtggctc-acgcctataat-cccagcactttgggaggccaaggtagg-c-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688387 57 - 96509753 Agccagggaaggtggctc-acgcctataat-cccagcactttgggaggccaaggtagg-c-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185595 59 - 13098629 agccagggaagtgctctc-acgcctataatccccagcactttggaggcccaaggtaggcc-- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4144950 57 - 4483953 Agccagggaaggtggctc-acgcctataat-cccagcactttgggaggccaaggtagg-c-- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24775359 57 + 33263144 Agtcaggcaaggtggctc-acgcctacaat-cccagcactttgggaggccaaggcagg-c-- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14059127 57 - 14338769 Agccagggaaggtggctc-acgcctataat-cccagcactttgggaggccaaggtagg-c-- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995488 57 + 1946073 Agccaggcaaggtggctc-acgcctataat-cccagcactttgggaggccaaggcagg-c-- i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36355579 36 - 42659167 -------------ggctcggcgcctatagc-tcaacc---------ggctaaggc--g-cca i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e cebCap1.NW_016107750v1 1415855 4505 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2020590 5413 - 2117846 I a score=1466665.000000 s hg38.chr22_GL383582v2_alt 152903 234 + 162811 ----ggatcacctgaggtcaggagttcaag--accagcctggccaacatggtg-aaaccccat-ctctactaaaaatacaaaact-tgg--ccaagggtggtggtgggcacctgtaatcccagctacacgggagactgaggc-aggagaatcacttgaacccaggaggcagaggttgcagtgagtggagatcgcaccactgc-acttcagcttgggtgacagagcaagactctgtctc----aaaaaaa---------------------ga s panTro5.chr22 28932442 234 + 37823149 ----ggatcacctgaggtcaggagttcaag--accagcctcgccaacatggtg-aaaccccat-ctgtactaaaaatacaaaact-tgg--ccaagggtggtggtgggcacctgtaatcccagctacacgggagactgaggc-aggagaatcacttgaacccaggaggcagaggttgcagtgagtggagattgcaccactgc-acttcagcttgggtgacagagcaagactctgtctc----aaaaaaa---------------------ga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41207137 234 + 50109623 ----ggatcacctgaggtcaggagttcaag--accagcctcgccaacatggtg-aaaccccat-ctgtactaaaaatacaaaact-tgg--ccaagggtggtggtgggcacctgtaatcccagctacacgggagactgaggc-aggagaatcacttgaacccaggaggcagaggttgcagtgagtggagattgcaccactgc-acttcagcttgggtgacagagcaagactctgtctc----aaaaaaa---------------------ga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3230194 231 + 4464012 ----agatcacctgaggtcaggagttcaag--accagcctggccaacatggtg-aaaccccat-ctctactaaaaatacaaaact-tgg--ccaagggtggtggtgggcacctgtaatcccagctacacgggagactgaggc-aggagaatcacttgaacccaggaggcagaggttgcagtgagt-gagatcgcaccactgc-acttcagcttgggtgacagagcaaga--ctgtctc----aaaaaaa---------------------ga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723331 249 - 115148730 ----ggatcacctgaggtcaggagttcaag--atcagcctggccaacatggtg-aaacccca------aataaaaatacaaaact-tgg--ccaagggtggtggtgggcacctgtaatcccagctacacgggagactgaggc-agaagaatcacttgaacccaggaggcggaggttgcagtgagtggagattgcaccactgc-acttcagcttaggtgacagagcgagactctgtctt----caaaaaaaaaaaaaaaaaa-aaaagaagaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84342093 249 + 92844088 ----ggatcatctgaggtaaggagttcaag--accagcctggccaacatggtg-aaactccat-ctctactaaaaatacaaaact-tgg--ccaagagtggtggggggtgcctgtaatcccagctacgtgggcaactgaggc-aggagaatcacttgaacccaggaggcggaggttgcagtgagtggcgattgtaccactgc-acttcagactggatgacagagcaagactctatctc----aaaaaaaaaagaaagaaagaaa------aa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688444 248 - 96509753 ----ggatcatctgaggtaaggagttcaag--accagcctggccaacatggtg-aaactccat-ctctactaaaaatacaaaact-tgg--ccaagagtggtggtgggtgcctgtaatcccagctacgtgggcaactgaggc-aggagaatcacttgaacccaggaggcggaggttgcagtgagtggcgattgtaccactgc-acttcagactggatgacagagcaagactctatctc----aaaaaaaaaagaaagaaag-aa------aa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185654 254 - 13098629 ----ggatcatctgaggtaaggagttcaag--accagcctgg-caacatggtgaaaactccatcctctactaaaaatacaaaactgtggccccaagagtggtggtgggtgcctgtaatcccagctacgtgggcaactgaggcaaggagaatcacttgaaccaggaggccggaggttgcagtgagtggcgattgtaccactgcaacttcagactggatgacagagcaagacctaatctc----caaaaaaaaaaaaaagaaa-ga------aa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4145007 246 - 4483953 ----ggatcatctgaggtaaggagttcaag--accagcctggccaacatggtg-aaactccat-ctctactaaaaatacaaaact-tgg--ccaagagtggtggtgggtgcctgtaatcccagctacgtgggcaactgaggc-aggagaatcacttgaacccaggaggcggaagttgcagtgagtggtgattgtaccactgc-acttcagaatggatgacagagcaagactctgactc----aaaaaaaaaaaaaa--aag-aa------aa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24775416 250 + 33263144 ----ggatcatctgaggtaaggagtttaag--accagcctggccaacatggtg-aaactccat-ctctactaaaaatacaaaact-tgg--ccaagagtggtggtgggtgcctgtaatcccagctacgtgggcaactgaggc-aggagaatcacttgaacccaggaggtggaggttgcagtgagtggcgattgtaccactgc-acttcagactggatgacagagcaaga--ctgtctcaaaaaaaaaaaaaaaaaaaaaag-aa------aa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14059184 249 - 14338769 ----ggatcatctgaggtaaggagttcaag--accagcctggccaacatggtg-aaactccat-ctctactaaaaatacaaaact-tgg--ccaagagtggtggtgggtgcctgtaatcccagctacgtgggcaactgaggc-aggagaatcacttgaacccaggaggcggaggttgcagtgagtggcgattataccactgc-acttcagaatggatgacagagcaagactctgtctc---aaaaaaaaaaaaaaagaaag-aa------aa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995545 243 + 1946073 ----ggatcatctgaggtaaggagttcaag--agcagcgtggccaacatggtg-aaactctat-ctctactaaaaatacaaaact-tgg--ccaagagtggtggtgggtgcttgtaatcccagctatgcgggcaactgaggc-aggagaatcacttgaacccaggaggcggaggttgcagcgagtggagactgtaccactgc-acttcagactggatgacagagcaagactctgtctc----aaaagaaaaaaaaa------ga------aa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2026003 235 - 2117846 ----ggatcacttgaacccaaaagtgtgag--accatcctggccaacatggtg-aaatcccat-ctcaactaaaactacaaaaat-tag--ccgagagtggtggcaggtacctgcaatcccagctacacgggagactgaggc-aggagaatcacttgaacctaggaggcagaggttgcagtgagctgagatcatgccactgc-acttcagcctgggtgacagagtaagactctgtctc----caaaaaaaaa-------------------- i calJac3.chrUn_GL286373 I 5413 C 0 s otoGar3.GL873526 36355615 229 - 42659167 gccatgtacacctaaggtggcgggttcgaatccccagcccgg---acccgcca-aa---caac-gacggctgcaaccaaaaaa---tag--ccgggcgttgtggcgggcgcctgtggtcccagctacttgggaggctgaggc-aggagactcgcttgagcccaggagttggaggttgctgtgagctgtaat---gccacggc-actctacccagggggacagcttgaggctctgtctc----aaaaaaaaa--------------------- i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e cebCap1.NW_016107750v1 1415855 4505 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=183788.000000 s hg38.chr22_GL383582v2_alt 153137 24 + 162811 aaaaagacatgcaggaacc-ttaaa s panTro5.chr22 28932676 24 + 37823149 aaaaagacatgcaggaacc-ttaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41207371 24 + 50109623 aaaaagacatgcaggaacc-ttaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3230425 24 + 4464012 aaaaagacatgcaggaacc-ttaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723580 24 - 115148730 aaaaagacatgcaggaacc-ttaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84342342 24 + 92844088 aaaaagacatggaggaacc-ttaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688692 24 - 96509753 aaaaagacatggaggaacc-ttaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185908 25 - 13098629 aaaaagacatggaggaacctttaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4145253 24 - 4483953 aaaaagacatggaggaacc-ttaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24775666 24 + 33263144 aaaaagacctggaggaacc-ctaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14059433 24 - 14338769 aaaaagacatggaggaacc-ttaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995788 24 + 1946073 aaaaagacatggaggaacc-ttaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2026238 24 - 2117846 aaaaagacattaaggaacc-ttaaa i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1420360 24 - 1807191 aaaaagacattaaggaatc-ttaaa i cebCap1.NW_016107750v1 I 4505 C 0 s otoGar3.GL873526 36355844 24 - 42659167 aaaaaaaaaGTCAAGTACT-TAGAA i otoGar3.GL873526 C 0 I 208 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=1868124.000000 s hg38.chr22_GL383582v2_alt 153161 284 + 162811 tgattattgctaa-gtgaaag-acatgaatctgaag--------tggctacatgactttagctatataatattctggaaaacaccaaactgtaaagtcagtaggaagatcaatgatta-ccaaggatccaagggaag-agggggaaggatgaatacggagagagtacaggtgactcctggg-atagtgaaacaattctgtataatactg------tatt-agcagatg-taagacattatgcatttgtccaaacccacagaatatacaacaaagaatgaactcAAGTCAGT-TGCTGTGGCTAGCA- s panTro5.chr22 28932700 284 + 37823149 tgattattgctaa-gtgaaag-acatgaatctgaaa--------tggctacatgactttagctatataatattctggaaaacaccaaactgtaaagtcagtaggaagatcaatgatta-ccaaggatccaagggaag-agggggaaggatgaatacggagagagtacaggtgactcctggg-atagtgaaacaattctgtataatactg------tatt-agcagatg-taagacattatgcatttgtcaaaacccacagaatatacaacaaagaatgaactcAAGTCAGT-TGCTGTGGCTAGCA- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41207395 284 + 50109623 tgattattgctaa-gtgaaag-acatgaatctgaaa--------tggctacatgactttagctatataatattctggaaaacaccaaactgtaaagtcagtaggaagatcaatgatta-ccaaggatccaagggaag-agggggaaggatgaatacggagagagtacaggtgactcctggg-atagtgaaacaattctgtataatactg------tatt-agcagatg-taagacattatgcatttgtcaaaacccacagaatatacaacaaagaatgaactcAAGTCAGT-TGCTGTGGCTAGCA- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3230449 284 + 4464012 tgattattgctaa-gtgaaag-acatgaatctgaag--------tggctccatgactttagctatataatattctggaaaacaccaaactgtcaagtcagtaggaagatcaatgatta-ccaaggatccaagggaag-agggggaaggatgaatacggagagagtacaggtgactcctggg-atagtgaaacaattctgtataatactg------tatt-agcagatg-taagacattatgcatttgtcaaaacccacagaatatacaacaaagaatgaactcAAGTCAGT-TGCTGTGGCTAGCA- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723604 288 - 115148730 tgattattgctaa-gttaaag-acatgaatctgaag--------tggctacatgactttagctatataatattctggaaaacgtgggtgtgtaaag-aattaagaatattga-ggtca-cccctgatgattcgtgcc-agggggaaggatgattgtgaggagagtacgggtgacccctggg-atagaggaaataatctgtataatactgtgttaatatt-agcaaacc-taagacattatacatttgtcaaaacctacggaacgtagaaaaaataatgaaGTCAAGTCAGT-TGCTGTGACTATCA- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84342366 278 + 92844088 tgattattgttaa-gtgaaag-acatgaatctgaag--------cagctacgtgactt------tataatattctggaaaatgcaaaactgtgaagtccgtaggaagatcaatgatta-ccaaggatccaagggaag-agcgggaaggatgaatacggggagaacacaggtgactcctggg-ataatgaaactattctgtataacactg------tatt-agcaaatg-caagacattatacatttgtcaaaacctacagaacatacaatgaagaatgaactctagtCAGT-CGCTGTGGCTAGCA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688716 278 - 96509753 tgattattgttaa-gtgaaag-acatgaatctgaag--------cagctacgtgactt------tataatattctggaaaatgcaaaactgtgaagtccgtaggaagatcaatgatta-ccaaggatccaagggaag-agcgggaaggatgaatacggggagagcacaggtgactcctggg-ataatgaaactattctgtataacactg------tatt-agcaaatg-caagacattatacatttgtcaaaacctacagaacatacaatgaagaatgaactctagtCAGT-CGCTGTGGCTAGCA- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7185933 285 - 13098629 tgattattgttaacgtgaaagaacatgaatctgaag--------cagctatgtgactt------aataatattctggaaaatgcaaaactgtgaagtccgtaggaagatcaatgattacccaaggatccaagggaagcagcgggaaggatgaatacgggaagagcacaggtgactcctgggaataatgaaactattctgtataacactg------tattcagcagatgccaagacattataca-ttgtc-aaacctacagaacatacaatgaagaatgaactctagtCAGTCCGCTGTGGCTAGCAG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4145277 278 - 4483953 tgattattgctaa-gtgaaag-acatgaatctgaag--------cagctacatgactt------tataatattctggaaaacgcaaaactgtgaagtccttaggaagatcaacgatta-ccaaggatccaagggaag-agcgggaaggatgaatacggggagagcacaggtgactcctggg-ataatgaaactattctgtataacactg------tatt-agcagatg-caagacattatacatttgtcaaaacctacagaacatacaatgaagaatgaactcAAGTCAGT-CGCTGTGGCTAGCA- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24775690 278 + 33263144 tgattattgctaa-gtgaaag-acatgaatctgaag--------cagctacatgactt------tataatattctggaaaacgcaaaagtgtgaagtccgtaggaagatcaatgatta-ccaaggatccaagggaag-agcgggaaggatgaatacggggagagcacaggtgactcctggg-ataatgaaactattctgtataacactg------tatt-agcagatg-caagacattatacatttgtcaaaacctacagaacatacaatgaagaatgaactcAGGTCAGT-CGCTGTGGCTAGCA- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14059457 278 - 14338769 tgattattgctaa-gtgaaag-acatgaatctgaag--------cagctacgtgactt------tataatattctggaaaacgcaaaactgtgaagtccgtaggaagatcaatgatta-ccaaggatccaagggaag-agcgggaaggatgaatacggggagagcacaggtgactcctggg-ataatgaaactattctgtataacactg------tatt-agcagatg-caagacattatacatttgtcaaaacctacagaacatacaatgaagaatgaactcAAGTCAGT-CGCTGTGGCTAGCA- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 995812 278 + 1946073 tgattattgctaa-gtgaaag-acatgaatctgaag--------cagctacatgactt------tataatattctggaaaacgcaaaactgtgaagtccgcaggaagatcaatgatta-ccaacgatccaagggaag-agcaggaaggatgaatatggggagagcacaggtgactcccggg-ataatggaactattctgtataatactg------tatt-agcagatt-caagacattatacatttgtcaaaacctacagaatatacaatgaagaatgaactcAAGTTAGT-TGCTGTGGCTAGCA- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2026262 291 - 2117846 tacttactgctaa-gtgaaag-acatgaatctgaagagggtacatgactacatgacttcagctatataatattttggaaaaagcaaaactgtagagtcagtaggaagatcaatgatta-ccaaagatct-agggaag-agcaggaaggatgaatagggggagagcacaggtgactcctggg-attgtgaaactattctgtataatactg------taac-agcagatg-taagacattatgcatttgtcaaaacccatggaatgcacaaaaaagaatgaactcAGATCAGG-TGCTGTGGTCAGCA- i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1420384 286 - 1807191 tgcttattgctaa-gtgaaag-acatgaatctgaagacggtacatgactacatgacttcagttatataatattttggaaaaagcaaaactgtagagtcagtaggaagatcaatgatta-caaaggatcc-agggaag-agcgggaagg----atatggggatagcacaggtgactcctggg-atagtgaaactattctgtataatactg------taat-agcag-tg-caagacattatgcatttatcaaaacccatggaatgtacaacaaagaacgaactcAGATCAGG-CACTGTGGCTAGCA- i cebCap1.NW_016107750v1 C 0 C 0 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e otoGar3.GL873526 36355868 208 - 42659167 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=268961.000000 s hg38.chr22_GL383582v2_alt 153445 33 + 162811 CCTGTAATCtcacctg--agtcc--------agcagctcaagg s panTro5.chr22 28932984 33 + 37823149 CCTGTAATCtcacctg--agtcc--------agcagctcaaga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41207679 33 + 50109623 CCTGTAATCtcacctg--agtcc--------agcagctcaaga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3230733 33 + 4464012 CCTGTAATCtcacctg--agtcc--------agcagctcaagg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723892 33 - 115148730 CCTGTAATCtcacctg--agtcc--------agcaactcaagg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84342644 33 + 92844088 CCTGTAATCtcacctg--agccc--------aggagctcaagg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87688994 33 - 96509753 CCTGTAATCtcacctg--agccc--------aggagctcaagg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7186218 33 - 13098629 CCTGTAATCtcacctg--agccc--------aggagctcaagg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4145555 33 - 4483953 CCTGTAATCtcacctg--agccc--------aggagctcaagg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24775968 32 + 33263144 CCTGTAATCtcacctg--agccc--------aggagctc-agg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14059735 33 - 14338769 CCTGTAATCtcacctg--agccc--------aggagctcaagg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 996090 33 + 1946073 CCTGTAATCtcacctg--agccc--------aggagctcaagg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2026553 33 - 2117846 CCTGTAATCtcacctg--aaccc--------aggagctcaaag i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1420670 33 - 1807191 CCTGTAATCtcacctg--aaccc--------aggagctcaagg i cebCap1.NW_016107750v1 C 0 C 0 s otoGar3.GL873526 36356076 43 - 42659167 CCAACAATCTCATCTGAAAGTCCTTGGCGTAAGAAACTCAAAG i otoGar3.GL873526 I 208 I 36 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=383367.000000 s hg38.chr22_GL383582v2_alt 153478 58 + 162811 ttactgcgagctatgattgtaccactgcactggctggcagagcaagacactgtctcaa s panTro5.chr22 28933017 57 + 37823149 ttactgcgagctatgattgtaccactgcactggctggcagagcaagacactgtctc-a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41207712 56 + 50109623 ttactgcgagctatgattgtaccactgcactggctggcagagcaagacactgtctc-- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3230766 56 + 4464012 ttactgcgagctatgattgtaccactgcactggctggcagagcaagacactgtctc-- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723925 58 - 115148730 ttactgcgagctatgattgcaccactgcactggctggcagagcaagatgctgtctcca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84342677 58 + 92844088 ttactgtgagctatgattgcactactgcactggctgacagagcaacatgctgtctctt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87689027 58 - 96509753 ttactgtgagctatgattgcactactgcactggctgacagagcaacatgctgtctctt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7186251 56 - 13098629 ttactgtgagctatgattgcactactgcactggctgacagagcaacatgc--tctctT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4145588 58 - 4483953 ttactgtgagctatgattgcactactgcactggctgacagagcaacatgctgtctctt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24776000 58 + 33263144 ttactgtgaactatgattgcactactgcactggctgacagagcaacatgctgtctctt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14059768 58 - 14338769 ttactgtgagctatgattgcactactgcactggctgacagagcaacatgctgtctctt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 996123 58 + 1946073 ttactgtgagctatgattgcaccactgcactggccaacagagcaacatgctgtctctt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2026586 54 - 2117846 ttactgtgagctctgactgcactactgca----ctgacagaacaagacgctatcactt i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1420703 58 - 1807191 ttactgtgagctctgactgcactaccgcagtggctgacagaacaagacgctgtctctt i cebCap1.NW_016107750v1 C 0 C 0 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e otoGar3.GL873526 36356119 36 - 42659167 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=-48660.000000 s hg38.chr22_GL383582v2_alt 153536 12 + 162811 a--------aaaaaaaaaaa- s panTro5.chr22 28933074 12 + 37823149 a--------aaaaaaaaaaa- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41207768 2 + 50109623 ------------------aa- i panPan2.chr22 C 0 C 0 s nomLeu3.chr7b 106723983 12 - 115148730 a--------aaaaaaaaaaa- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84342735 3 + 92844088 t----------------tt-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87689085 4 - 96509753 t----------------tta- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7186307 20 - 13098629 Taaaaaaaaaaaaaaaacaa- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4145646 2 - 4483953 t------------------a- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24776058 1 + 33263144 t-------------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14059826 1 - 14338769 t-------------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 996181 1 + 1946073 t-------------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2026640 6 - 2117846 a--------aaaaa------- i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1420761 12 - 1807191 a--------aaaaaaaaaaa- i cebCap1.NW_016107750v1 C 0 I 227 s otoGar3.GL873526 36356155 12 - 42659167 ---------AAGGGATTTAAA i otoGar3.GL873526 I 36 C 0 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e saiBol1.JH378157 8927669 6763 - 16357246 I e gorGor5.CYUI01015375v1 3230822 0 + 4464012 C a score=441480.000000 s hg38.chr22_GL383582v2_alt 153548 75 + 162811 aaaaaaaaaaa--------------------aaaaaaaaaagtcagg-catgatgg-ctcacgcctgtaatcccag--cactttgggaggctgaggtgg-------- s panTro5.chr22 28933086 75 + 37823149 aaaaaaaaaaa--------------------aaaaaaaaaagtcagg-catgatgg-ctcacgcctgtaatcccag--cactttgggaggctgaggtgg-------- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41207770 75 + 50109623 aaacaaaaaaa--------------------aaaaaaaaaagtcagg-catgatgg-ctcacgcctgtaatcccag--cactttgggaggctgaggtgg-------- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3230822 74 + 4464012 -aaaaaaaaaa--------------------aaaaaaaaaagtcagg-catggtgg-ctcacgcctgtaatcccag--cactttgggaggctgaggtgg-------- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106723995 95 - 115148730 aaaaaaaaaaaaaaccaacaacaacaacaacaaaaaaaaCggtcaag-catggtgg-ctcacgcctataatctcag--cactttgggaggctgagctgg-------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84342738 71 + 92844088 ----ttaaaaa--------------------aaaaaaaaaggtcagt-catggtga-ctcacgcctgtaatgccag--cactttgggaggctgagatgg-------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87689089 75 - 96509753 aaaaaaaaaaa--------------------aaaaaaaaaggtcagt-catggtga-ctcacgcctgtaatgccag--cactttgggaggctgagatgg-------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7186327 79 - 13098629 aaaaaaaaaaa--------------------aaaaaaaaaGGTCAGTCCATggtgacctcacgcctgtaatgcccagccactttgggagcctgagatgg-------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4145648 75 - 4483953 aaaaaaaaaaa--------------------aaaaaaaaaggtcagg-catggtga-ctcatgcctgtaatgccag--cactttgggaggctgagatgg-------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24776059 72 + 33263144 ---aaaaaaaa--------------------aaaaaaaaaagtcagg-catagtga-ctcacgcctgtaatgtcag--cactttcggaggctgagatgg-------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14059827 71 - 14338769 ----aaaaaaa--------------------aaaaaaaaaggtcagg-catggtga-ctcatgcctgtaatgccag--cactttgggaggctgagatgg-------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 996182 74 + 1946073 -aaaaaaaaaa--------------------aaaaaaaaaggtcagg-tatggtga-ctcatgcctgtaatcccag--tactttgggaggctgagatgg-------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2026646 73 - 2117846 aaaaaaaaaaa--------------------aaaaaacaaaGTTggg-cgtggtgc-ctcatccc--taatactag--cactttgggaggttgaggtgg-------- i calJac3.chrUn_GL286373 C 0 I 1 s otoGar3.GL873526 36356167 83 - 42659167 GTAAATAAATA--------------------AATAAATCTAgccagg-cgtggtgc-ttcatatctataatcctag--cactttggggagccaagacaggaaggagg i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e cebCap1.NW_016107750v1 1420773 227 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I a score=1326188.000000 s hg38.chr22_GL383582v2_alt 153623 231 + 162811 actgatca-cttgacgtcagaaatttgagaccagcctggccaacacgg-tgaaaccctgtctctactaaaaatataaaaattag-caggcatggtggtg-ggt--gcctgtaatcccagctactcagaaggctgaggcaggagaatcgcttgaaccctggaggt-ggaggttgcagtgagctgagatcacaccactgcactc--cagcctgggcaacagagcaagactccctctcaaaaa s panTro5.chr22 28933161 231 + 37823149 actgatca-cttgacgtcagaaatttgagaccagcctggccaacacga-tgaaaccctgtctctactaaaaatataaaaattag-caggcatggtggtg-ggt--gcctgtaatcccagctactcagaaggctgaggcaggagaatcgcttgaaccctggaggt-ggaggttgcagtgagctgagatcacaccactgcactc--cagcctgggcaacagagcaaaactccctctcaaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41207845 231 + 50109623 actgatca-cttgacgtcagaaatttgagaccagcctggccaacacaa-tgaaaccctgtctctactaaaaatataaaaattag-caggcatggtggtg-ggt--gcctgtaatcccagctactcagaaggctgaggcaggagaatcgcttgaaccctggaggt-ggaggttgcagtgagctgagatcacaccactgcactc--cagcctgggcaacagagcaaaactccctctcaaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3230896 232 + 4464012 actgatca-cttgacgtcagaaatttgagaccagcctggccaacacgg-tgaaaccctgtctctactaaaaatataaaaattagccaggcatggtggtg-ggt--gcctgtaatcccagctactcagaaggctgaggcaggagaatcgcttgaaccctggaggt-ggaggttgcagtgagctgagatcacaccactgcactc--cagcctgggtgacagagcaagactccctctcaaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106724090 232 - 115148730 actgatca-cttgatgtcaggagtttgagaccagcctggccaacacgg-caaaactctgtctctactaaaaatacaaaaatgagccgagcatggtggtg-ggt--gcctgtaatcccagctactcagaaggctgaggcaggagaatcacttgaaccctggaggt-ggaggttgcagtgagctgagatcataccactgcactc--cagcctgggcgacagagcaagactccctctcaaaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84342809 233 + 92844088 atggatca-cctgaggtcaggagttcgaaaccaacctggccaacatga-tgaaaccccatctctactaaaaatacaaaaattagccgggcatggtggtg-gat--gcctgtaatcccagctactcagaagggtgaaccaggagaatcgcttgaaccctggagatgggaggttgcagtgagctaagatcatactactgcactc--cagcctgggcgacagaacaagacgctgtctcaaaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87689164 233 - 96509753 atggatca-cctgaggtcaggagttcgaaaccaacctggccaacatga-tgaaaccccatctctactaaaaatacaaaaattagccgggcatggtggtg-gat--gcctgtaatcccagctactcagaagggtgaaccaggagaatcgcttgaaccctggagatgggaggttgcagtgagctaagatcatactactgcactc--cagcctgggcgacagaacaagacgctgtctcaaaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7186406 236 - 13098629 atggatcaccctgaggtcaggagttcgaaaccaacctggccaacatga-tgaaaccccatctctactaaaaatac-caaattagccgggcatgcaggtgtgattggcctgtaatcccagctactcagaagggtgaaccaggagaatcgcttgaaccctggagatgggaggttgcagtgagctaagatcatactactgcactc--cagcctgggcgacagaacaagacgctgtctcaaaaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4145723 233 - 4483953 atggatca-cctgaggtcaggagttcgaaaccaacctggccaacatga-tgaaaccccatctctactaaaaatacaaaaattagccgcgcatggtggtg-ggt--gcctgtaatcccagctactcagaagggtgaagcaggagaatcgcttgaaccctggagatgggaggttgcagtgagctaagatcatactactgcactc--cagcctgggcgacagaacaagacactgtctcaaaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24776131 233 + 33263144 atggatca-cctgaggtcaggagttcgaaaccaacctggccaacatga-tgaaaccccatctctactaaaaatacaaaaattagctgggcatggtggtg-ggt--gcctgtaatcccagctactcagaagggtgaagcaggagaattgcttgaaccctggagatgggaggttgcagtgagctgagatcacactactgcactc--cagcctgggcgacagagcaagaggctgtctcaaaaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14059898 233 - 14338769 atggatca-cctgaggtcaggagttcgaaaccaacctggccaacatga-tgaaaccccatctctactaaaaatacaaaaattagccgggcatggtggtg-ggt--gcctgtaatcccagctactcagaagggtgaagcaggagaatcgcttgaaccctggagatgggaggttgcagtgagctaagatcatactactgcactc--cagcctgcgcgacagaacaagacgctgtctcaaaaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 996256 232 + 1946073 atggatca-cctgaggtcaggagttcgaaaccaacctggccaatatgg-tgaaaccccatctctactaaaaatacaaaaattagccgggcatggtggtg-ggt--gcctgtaatcccagctactcggaagggtaaggcaggagaatcacttgaaccctggagatgggaggttgcagtgagctgagatcacactactgcactc--cagcctgggcggcagagcaagacgcc-tctcaaaaa i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36356250 224 - 42659167 ----actg-cttgagatcagtagttcgagactagtctg---aacatgagcaaggtcctgtttctgcaaaaatgagaaaaactagccagccatggtgata-tga--acctgcagtcctagctgtctgacaggctggggcagga----cacttgagcctgggggtt-tgaggtcgcaaggaggtatgatgatgccactgtattctatagccagagtgacagagtgagaccctgtctcaaaaa i otoGar3.GL873526 C 0 I 3724 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e cebCap1.NW_016107750v1 1420773 227 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2026719 1 - 2117846 I a score=492486.000000 s hg38.chr22_GL383582v2_alt 153854 101 + 162811 caaacaaaaaaaGGTCAaatatgaactggactggagttaataataaaatatcaatactgtatatcaagtgtagcaaatgcaccacactaatatgagatatt s panTro5.chr22 28933392 101 + 37823149 caaacaaaaaaaGGTCAaatatgaactggacttgagttaataataaaatatcaatactgtatatcaagtgtagcaaatgcaccacactaatatgagatatt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41208076 96 + 50109623 caaacaaaaaaaGGTCAaatatgaactggacttgagttagtaataaaatatcaatacggtatatcaagtgtagcaaatgcaccacac-----tgagatatt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3231128 101 + 4464012 caaacaaaaaaaGGTCAaatatgaactggacttgagttaataataaaatatcaatactgtatatcaagtgtagcaaatgcatcacactaatatgagatatt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106724322 96 - 115148730 caaacaaaaaaaGGTCAaatatgaactggacttgagttaataataaagtatcaatactgtagatcaagtgtagcaaatgcaccacac-----taatatatt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84343042 89 + 92844088 caaacaaaaa-aGGTCAAATATGAACTGAACTTG-----------AAgtatcaatattgtatatcaagtgtagcaaatgcaccacactaatatgatacatt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87689397 89 - 96509753 caaacaaaaa-aGGTCAAATATGAACTGAACTTG-----------AAgtatcaatattgtatatcaagtgtagcaaatgcaccacactaatatgatacatt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7186642 89 - 13098629 caaacaaaaa-aGGTCAAATATGAACTGAACTTG-----------AAgtatcaatattgtatatcaagtgtagcaaatgcaccacactaatatgatacatt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4145956 100 - 4483953 caaacaaaaa-aGGTCAaatatgaactgaacttgagttaataataaagtatcaatattgtatatcaagtgtagcaaatgcaccacactaatatgatacatt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24776364 100 + 33263144 caaacaaaaa-aGGTCAaatatgaactgaacttgagttaataataaagtatcaatattgtacatcaagtgtagcaaatgcaccacactaatatgatacatt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14060131 100 - 14338769 caaacaaaaa-aGGTCAaatatgaactgaacttgagttaataataaagtatcaatattgtgtatcaagtgtagcaaatgcaccacactaatatgatacatt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 996488 101 + 1946073 caaacaaaaaTAGGTCAaatatgaactggacttgagttaataataaagcatcaatattgtatatcaagtgtagcaaatgcaccacactaatatgatacatt i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e otoGar3.GL873526 36356474 3724 - 42659167 I e cebCap1.NW_016107750v1 1420773 227 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2026719 1 - 2117846 I a score=313516.000000 s hg38.chr22_GL383582v2_alt 153955 53 + 162811 agtaatagtggaacctatggttggattgag--ggagggtaaacaggaactctctt s panTro5.chr22 28933493 53 + 37823149 agtaatagtggaacctatggttggattgag--ggagggtaaacaggaactctcac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41208172 53 + 50109623 agtaatagtggaacctatggttggattgag--ggagggtaaacaggaactctctc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3231229 53 + 4464012 agtaatagtggaacctacggttggattgag--ggagggtaaacaggaactctctt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106724418 53 - 115148730 agtaatagtggaacctatggttggattgag--ggagggtaaacagaaactctctt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84343131 53 + 92844088 agtaatagtggaaactatggccggattgag--ggagggtaaacaggaactctctt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87689486 53 - 96509753 agtaatagtggaaactatggccggattgag--ggagggtaaacaggaactctctt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7186731 53 - 13098629 agtaatagtggaaactatggccggattgag--ggagggtaaacaggaactctctt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4146056 53 - 4483953 agtaatagtggaaactatggccggattgag--ggagggtaaacaggaactctctt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24776464 53 + 33263144 agtaatagtggaaactacagccggattgag--ggagggtaaacaggaactctctt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14060231 53 - 14338769 agtaatagtggaaacgatggccggattgag--ggagggtaaacaggaactctctt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 996589 53 + 1946073 agtaataatggaaactatggccggcttgcg--ggagggtaaacaggaactctctt i colAng1.NW_012115588v1 C 0 I 1618 s otoGar3.GL873526 36360198 52 - 42659167 aattataggggatactatggctgggattagcagaggaataaataggaactgt--- i otoGar3.GL873526 I 3724 C 0 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e cebCap1.NW_016107750v1 1420773 227 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2026719 1 - 2117846 I a score=99935.000000 s hg38.chr22_GL383582v2_alt 154008 17 + 162811 attgctcattttttctg s panTro5.chr22 28933546 17 + 37823149 attgctcattttttctg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41208225 17 + 50109623 attgctcattttttctg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3231282 17 + 4464012 attgctcattttttctg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106724471 17 - 115148730 attgctcattttttctg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84343184 17 + 92844088 attgctcattttttctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87689539 17 - 96509753 attgctcattttttctg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7186784 17 - 13098629 attgctcattttttctg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4146109 17 - 4483953 attgctcattttttctg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24776517 17 + 33263144 attgctcattttttctg i chlSab2.chr19 C 0 I 16 s manLeu1.NW_012102031v1 14060284 17 - 14338769 attgctcattttttctg i manLeu1.NW_012102031v1 C 0 C 0 s otoGar3.GL873526 36360250 17 - 42659167 acttctcattttttcta i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e cebCap1.NW_016107750v1 1420773 227 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2026719 1 - 2117846 I e colAng1.NW_012115588v1 996642 1618 + 1946073 I a score=70740.000000 s hg38.chr22_GL383582v2_alt 154025 14 + 162811 taaacctaaaactg s panTro5.chr22 28933563 14 + 37823149 taaacctaaaactg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41208242 14 + 50109623 taaacctaaaactg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3231299 14 + 4464012 taaacctaaaactg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106724488 14 - 115148730 taaacctaaaactg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84343201 14 + 92844088 taaacctaaaactg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87689556 14 - 96509753 taaacctaaaactg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7186801 14 - 13098629 taaacctaaaactg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4146126 14 - 4483953 taaacctaaaactg i cerAty1.NW_011999588v1 C 0 C 0 s manLeu1.NW_012102031v1 14060301 14 - 14338769 taaacctaaaactg i manLeu1.NW_012102031v1 C 0 C 0 s otoGar3.GL873526 36360267 14 - 42659167 taaatctaaaactg i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e cebCap1.NW_016107750v1 1420773 227 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2026719 1 - 2117846 I e colAng1.NW_012115588v1 996642 1618 + 1946073 I e chlSab2.chr19 24776534 16 + 33263144 I a score=967296.000000 s hg38.chr22_GL383582v2_alt 154039 187 + 162811 ctctaagcaataaagtctactaacatttctcttaaaaaGTtaatgtatcaggaaaaatgaaccacaatgacacagcacttcatacccataggtatggctataggaaagaaaacaaaaaattacaagtgttggtgatgatgtggagagactggaaccctcacatattgctggt----------------------------------gggggccaggcacac s panTro5.chr22 28933577 187 + 37823149 ctctaagcaataaagtctactaacatttctcttaaaaaGTTAATGTATCAGGAAAAACGaaccacaatgacacagcacttcatacccagcaggatggctgtaggaaagaaaccaaaaaattacaagtgttggtgatgatgtggagagactggaaccctcacatattgctggt----------------------------------gggggccagggacac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41208256 187 + 50109623 ctctaagcaataaagtctactaacatttctcttaaaaaGTTAatgtatcaggaaaaacgaaccacaatgacacagcacttcatacccagcaggatggctataggaaagaaaccaaaaaattaccaatgttggtgatgatgtggagagactggaaccctcacatattgctggt----------------------------------gggGGCCAGGCACAC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3231313 186 + 4464012 ctctaagaaataaagtctactaacatttctcttaaaaaGTTAATGTATCAGGAAAAACaaaccacaatgacacagcacttcatacccagtaggatggctataggaaagaaaacaaaaaattacaagtgttggtgatgatgtggagagattggaaccctcacatattgctggt-----------------------------------gggaccaggcacac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106724502 187 - 115148730 ctctaagaaataaagtctactaacatttttcttaaaaaGTtaatgtatcaggaaaaacaaaccacaatgagatagcacttcatacccagtaggatggctataggaaggaaaacaaaaaattacaagtgttggtgatgatgtggagagactgggaccctcacatattgctggt----------------------------------aggGGCCAGGCACAC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84343215 186 + 92844088 ctctaagaaataaagtctactaacatttttcttaaaaaGTTCATGTATCAGGAAAAACaaaccacaatgagacagcacttcatacccagtaggatggctataggaaggaaaacaaaaaattacaagtgttggtgatgatatggagagattggaaccctcacatattgctggt-----------------------------------ggggccaggcacag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87689570 186 - 96509753 ctctaagaaataaagtctactaacatttttcttaaaaaGTTCATGTATCAGGAAAAACaaaccacaatgagacagcacttcatacccagtaggatggctataggaaggaaaacaaaaaattacaagtgttggtgatgatatggagagattggaaccctcacatattgctggt-----------------------------------ggggccaggcacag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7186815 186 - 13098629 ctctaagaaataaagtctactaacatttttcttaaaaaGTTCATGTATCAGGAAAAACaaaccacaatgagacagcacttcatacccagtaggattgctataggaaggaaaacaaaaaattacaagtgttggtgatgatatggagagattggaaccctcacatattgctggt-----------------------------------ggggccaggcacag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4146140 186 - 4483953 ctctaagaaataaactctactaacatttttcttaaaaaGTTCATGTATCAGGAAAAACaaaccacaatgagacagcacttcatacccagtaggatggctataggaaggaaaacaaaaaattacaagtgttggtgatgatatggagagattggaaccctcacatattgctggt-----------------------------------ggggccaggcacag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24776550 186 + 33263144 ctctaagaaataaagtctactaacatttttcttaaaaaGTTCATGTATCAGGAAAAACaaaccacaatgagacagcacttcatacccagtaggatggctataggaaggaaaacaaaaaattacaagtgttggtgatgatatggagagattggaaccctcacatattgctggt-----------------------------------ggggccaggcacag i chlSab2.chr19 I 16 C 0 s manLeu1.NW_012102031v1 14060315 186 - 14338769 ctctaagaaataaagtctactaacatttttcttaaaaaGTTCATGTATCAGGAAAAACaaaccacaatgagacagcacttcatacccagtaggatggctataggaaggaaaacaaaaaattacaagtgttggtgatgatatggaaagactggaaccctcacatattgctggt-----------------------------------ggggccaggcacag i manLeu1.NW_012102031v1 C 0 C 0 s otoGar3.GL873526 36360281 213 - 42659167 ctctaagaaattaagtctattaattttttt-----aaaGTTAATATATTAGAAAAAa-gaactacaa-gagataccacatcatactcactaggaaggctataataaagaaaat-aaaaatcacatgagtcggtgaggatgtgaagaaactggaaccctcatatattgctagttatgaaagaatataaggctcagcgcctgtgtctcaagcgccagccacat i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e cebCap1.NW_016107750v1 1420773 227 - 1807191 I e saiBol1.JH378157 8927669 6763 - 16357246 I e calJac3.chrUn_GL286373 2026719 1 - 2117846 I e colAng1.NW_012115588v1 996642 1618 + 1946073 I a score=1042683.000000 s hg38.chr22_GL383582v2_alt 154226 176 + 162811 tggatcacttgaagccaggagttaggagaccagcctggccaaccatggtgagaccctgtctata---aaaatacaaaaattagacaggtatggtggcacatacctgtaatcccagctatttgggaggctgaagcaagagaatcactcgagcccagtg-agtgaagcctgtagtgatccac s panTro5.chr22 28933764 176 + 37823149 tggatcacttgaagccaggagttaggagaccagcctggccaaccatggtgagaccctgtctcta---aaaatacaaaaattagacaggtatggtggcacataccagtaatcccagctatttgggaggctgaggcaagagaatcactcgagcccagtg-agtgaagcctgtagtgatccat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41208443 176 + 50109623 Tggatcacttgaagccaggagttaggagaccagcctggccaaccatggtgagaccctgtctcta---aaaatacaaaaattagacaggtatggtggcacataccagtaatcccagctatttgggaggctgaggcaagagaatcactcaagcccagtg-agtaaagcctgtagtgatccat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3231499 176 + 4464012 tggatcacttgaagccaggagttaggagaccagcctggccaaccatggtgagaccctgtctcta---aaaatacaaaaattagacaggtatggtggcacatacctgtaatcccagctatttgggaggctgaggcaagagaatcactcgagcccagtg-agtgaagcctgtagtgatccac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106724689 175 - 115148730 Tggatcacttgaagccaggagttaggagaccagcctggccaa-catggtgagaccctgtctcta---aaaatacaaaaattagacaggcttggtggcacacacctgtagtcccagctatttgggaggctgaggcaagagaattgctcaagcccagtg-agtgaagcctgtagtgatccac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84343401 175 + 92844088 cggatcacttgaagccaggagttaccagaccagcctggccaa-catggtgaaaccttgttccta---aaaatacaaaaattagccaggcatggtggtacacacctgtaatcccagctatttgggaggctgaggcacgagaaacgccggagctcagtg-agtgaagcctgtagtgatccac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87689756 175 - 96509753 cggatcacttgaagccaggagttaccagaccagcctggccaa-catggtgaaaccttgttccta---aaaatacaaaaattagccaggcatggtggtacacacctgtaatcccagctattcgggaggctgaggcacgagaaacgccagagctcagtg-agtgaagcctgtagtgatccac i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7187001 175 - 13098629 cggatcacttgaagccaggagttaccagaccagcctggccaa-catggtgaaaccttgttccta---aaaatacaaaaattagccaggcatggtggtacacacctgtaatcccagctattcgggaggctgaggcacgagaaacgccggagctcagtg-agtgaagcctgtagtgatccac i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4146326 175 - 4483953 tggatcacttgaagccaggagttacgagaccagcctggccaa-catggtgaaaccttgttccta---aaaatacaaaaattagccaggcatggtggtacacacctgtaatcccagctattcgggaggctgaggcacgagaaacgccggagctcagtg-agtgaagcctgtagtgatccgc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24776736 175 + 33263144 tggatcacttgaagccaggagttaccagaccagcctggccaa-catggtgaaaccttgttccta---aaaatacaaaaattagccaggcatggtggtacacacctgtaatcccagctattcgggaggctgaggcacgagaaacgcctgagctcagtg-agtgaagcctgtagtgatccgc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14060501 175 - 14338769 tggatcacttgaagccaggagttacgagaccagcctggccaa-catggtgaaaccttgttccta---aaaatacaaaaattagccaggcatggtggtacacacctgtaatcccagctattcgggaggctgaggcacgagaaacgccggagctcagtg-agtgaagcctgtagtgatccgc i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2026720 172 - 2117846 tggatcacttgaggtcaag-------agaccagcctggccaa-catagcaaaacccagactctactgaaaatacaaaaattagctgggcatggttgcatatgcctgtagtccccactactcaggagactgaggtgggagagttgctcaagcctggggaagcggcggttgtagcgagctga i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8934432 172 - 16357246 tggatcacttgaggtcgag-------agaccagcgtggccaa-catggcaaaacccagtctctactaaaaatacaaaaattagcttggcatggtggcatatgcctgtagttcccactactcgggagactgaggtaggagagtcgctcaagcccagggaagtggaggttgcagtgagccga i saiBol1.JH378157 I 6763 C 0 s otoGar3.GL873526 36360494 166 - 42659167 ----acacctaaggt-ggcaggtttgaatctagcccgggccgccaaacaacaatgatggctgca---a----ccagaaaatagccgggcgttgtggcaggcgcctgt-gtcccagctacttgggaggctgaggcaggagacttgcttgagcccagga-gttggaggttgctgtgagctgt i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e cebCap1.NW_016107750v1 1420773 227 - 1807191 I e colAng1.NW_012115588v1 996642 1618 + 1946073 I a score=37632.000000 s hg38.chr22_GL383582v2_alt 154402 5 + 162811 gatca s panTro5.chr22 28933940 5 + 37823149 gatca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41208619 5 + 50109623 gatca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3231675 5 + 4464012 gatca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106724864 5 - 115148730 gatca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84343576 5 + 92844088 gatca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87689931 5 - 96509753 gatca i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7187176 5 - 13098629 gatca i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4146501 5 - 4483953 gatca i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24776911 5 + 33263144 gatca i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14060676 5 - 14338769 gatca i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2026892 5 - 2117846 gatcg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8934604 5 - 16357246 gatcg i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1421000 5 - 1807191 gatca i cebCap1.NW_016107750v1 I 227 C 0 s otoGar3.GL873526 36360660 3 - 42659167 gat-- i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 46737 5483 - 704494 I e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e colAng1.NW_012115588v1 996642 1618 + 1946073 I a score=2032651.000000 s hg38.chr22_GL383582v2_alt 154407 223 + 162811 tgccactgccctccagcctgggccacaCAtgg----------------------------gaatataaaa-tattcagccactgtgaaaaagtctggtggttcttcaaaaagttgaatacagaatta-cacgatccagcaactccattcctaggtatatactcaaaataagtgaaaacaggtatccaaacaaatagatatacacacatgttc-atagcagcactattcaaaatagccaaaaggtggaaacaacc--- s panTro5.chr22 28933945 223 + 37823149 tgccactgcactccagcctgggccacacatgg----------------------------gaatataaaa-tattcagccactgtgaaaaagtctggtggttcttcaaaaagttgaatacagaatta-cacgatccagcaactccattcctaggtatatactcaaaataagtgaaaacaggtatccaaacaaatagatatacacacatgttc-atagcagcactattcaaaatagccaaaaggtggaaacaacc--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41208624 223 + 50109623 tgccactgcactccagcctgggccacaCACgg----------------------------gaatataaaa-tattcagccactgtgaaaaagtctggtggttcttcaaaaagttgaatacagaacta-cacgatccagcaactccattcctaggtatatactcaaaataagtgaaaacaggtatccaaacaaatagatatacacacatgttc-acagcagcactattcaaaatagccaaaaggtggaaacaacc--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3231680 223 + 4464012 cgccactgcactccagcctaggccacacatgg----------------------------gaatataaaa-tattcagccactgtgaaaaagtctggtggttcttcaaaaagttgaatacagaatta-cacgatccagcaactccattcctaggtatatactcaaaataagcgaaaacaggtatccaaacaaatagatatacacacatgttc-atagcagcactattcaaaatagccaaaaggtggaaacaacc--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106724869 214 - 115148730 cgccactgcactccagcctgggccac--------------------------------------ataaaa-tatccagccactgtgaaaaagtctggtggttcttcaaaaagttgaatacagaattaccatgatccagcaactccactcctaggtatatactcaaaataagtgaaaacaggtatccaaacaaacagatatacacacatgttc-ataacagcactattcaaaatagccaaaaggtggaaacaact--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84343581 224 + 92844088 cgccactgcactccagcctgggccacgcgtgg----------------------------gaatataaaa-tattcagccactgtgaaaaagtctggtggttcttcaaaaagttgaatacaaaattaccatgatccagcaattccactcctaggtagatactcaaagtaagtgaaaacaggtatccaaacaaatagatatacacacatgttc-atagcagcactattaaaaatagccaaaacatggaaacaact--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87689936 224 - 96509753 cgccactgcactccagcctgggccacgcgtgg----------------------------gaatataaaa-tattcagccactgtgaaaaagtctggtggttcttcaaaaagttgaatacaaaattaccatgatccagcaattccactcctaggtagatactcaaagtaagtgaaaacaggtatccaaacaaatagatatacacacatgttc-atagcagcactattaaaaatagccaaaacatggaaacaact--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7187181 224 - 13098629 cgccactgcactccagcctgggccacgcgtgg----------------------------gaatataaaa-tattcagccactgtgaaaaagtctggtggttcttcaaaaagttgaataaagaattaccatgatccagcaattccactcctaggtagatactcaaagtaagtgaaaacaggtatccaaacaaatagatatacacacatgttc-atagcagcactattaaaaatagccaaaagatggaaacaact--- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4146506 224 - 4483953 cgccactgcactccagcctgggctacgcgtgg----------------------------gaatataaaa-tattcagccactgtgaaaaagtctggtggttcttcaaaaagttgaatacagaattaccatgatccagcaattccactcctaggtagatactcaaagtaagtgaaaacaggtatccaaacaaatagatatacacacatgttc-atagcagcactattaaaaatagccaaaagatggaaacaact--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24776916 222 + 33263144 cgccactgcactccagcctgggccacacgtgg----------------------------gaatataaaa-tattcagccactgtg--aaagtctggtggttcttcaaaaagttgaatacagaattatcatgatccagcaattccactcctaggaagatactcaaagtaagtgaaaacaggtatccaaacaaatagatacacacacatgttc-atagcagcactattaaaaatagccaaaagatggaaacaact--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14060681 224 - 14338769 cgccactgcactccagcctgggccacgcgtgg----------------------------gaatataaaa-cattcagccactgtgaaaaagtctgatggttcttcaaaaagttgaatacagaattaccatgatccagcaattccactcctaggtagatactcaaagtaagtgaaaacaggtatccaaacaaatagatatacacacatgttc-atagcagcactattaaaaatagccaaaagatggaaacaact--- i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2026897 223 - 2117846 caccactgcactccaacatgggcaacaggtgg----------------------------gaagagaaaa-tattcagccactgtgaaaaagtgtggtggttcttcaaaaagttgaatacagaattgccacgatccaacaattccactcctaggtatatactcaaaataagtgaaaacaggtatctaaacaaatagatgcaaacgcatttt--atagcagtgctatacataatagccaaaaggggtaaacaacc--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8934609 225 - 16357246 cgccactgcactccaacctgggcaacaggtgg----------------------------gaatagaaaa-tattcagccactgtgaaaaagtctggtggttcttcaaaaagttgaatacagaattgctgcgatccagcaattccactcctaggtatatactcaaaataagtgaaaacaggtatctaaacaaatagatgcacacgcatgtttaatagcagcactatacaaaacagccaaaaggcaaaaacaacc--- i saiBol1.JH378157 C 0 I 79 s cebCap1.NW_016107750v1 1421005 222 - 1807191 cgccactgcactccaacctgggcaacaggtgg----------------------------gaatagaaaa-tattcagccactgtgaaaaagtctggtggttcttcaaaaagttgaatacagaattgccacgatccagcaactccactcctaggtatatactcaaaataagtgaaaacaggtatctaaacaaatagatgcacacacgttt---atagcagcactatacaaaacagccaaaaggcagaaacaacc--- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 52220 224 - 704494 tgccactgcacttcaacctgggcaacaggcgg----------------------------gaACAGaaaa-tattcagccactgtgaaaaagtctggtggttcttcaaaaagttgaatacggaatttccacgatccagcaattccactcctaggtatatacttaaaataagtgaaaacagggatctaaacaaatagatgcacacacatgttt-atagcagcactatacaaaatagccaaaaggcagaaacaacc--- i aotNan1.NW_018512389v1 I 5483 C 0 s otoGar3.GL873526 36360663 245 - 42659167 -gccacagcactctacccagggggacagcttgaggctctgtctcaaaaagaaaaaaaaaagaatataaaattattca------ctgagaaagtctggtggttcctcagtaagttgaatatagaactgtgacgactaagtaattctactcctaggtatatacccaaaataaatgaaaacaggtatttaaacaaatacatgtaca--catgttt-atagtagcactattcaatatagccaaaaggtgaaa--aaccatc i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e colAng1.NW_012115588v1 996642 1618 + 1946073 I a score=369956.000000 s hg38.chr22_GL383582v2_alt 154630 62 + 162811 gaaatgtccatcaacagatgaacggatgaacagattgtggtatatacat-aaaactgagtat-g s panTro5.chr22 28934168 62 + 37823149 gaaatgtccatcaacagatgaacggatgaacagattgtggtatatacat-aaaactgaatat-t i panTro5.chr22 C 0 C 0 s panPan2.chr22 41208847 62 + 50109623 gaaatgtccatcaacagatgaacggatgaacagattgtggtatatacat-aaaactgaatat-t i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3231903 62 + 4464012 gaaatgtccatcaacagatgaacggatgaacagattgtggtatatacat-aaaactgaatat-t i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106725083 63 - 115148730 gaaatgtccatcagcagatgaacggatgaacagattgtggtatatacataaaaactgaatat-t i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84343805 58 + 92844088 gaaatgtccatcaacagatgaacggatgaacacatggtggtgtatacat-aaaactgag----- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87690160 58 - 96509753 gaaatgtccatcaacagatgaacggatgaacacatggtggtgtatacat-aaaactgag----- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7187405 58 - 13098629 gaaatgtccatcaacagatgaacggatgaacacatggtggtatatacat-aaaactgag----- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4146730 62 - 4483953 gaaatgtccatcaacagatgaacggatgaacagatggtggtgtatacat-aaaactgagtat-t i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24777138 62 + 33263144 gaaatgtccatcaacagatgaacggatgaacagatggtggtgtatacat-aaaactgagtat-t i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14060905 62 - 14338769 gaaatgtccatcaacagatgaacagatgaacagatggtggtgtatacat-aaaactgagtat-t i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2027120 60 - 2117846 caaatgtccatccacagatgaacaaataaacagattatggtatatatat-acacacaacaa--- i calJac3.chrUn_GL286373 C 0 C 0 s cebCap1.NW_016107750v1 1421227 62 - 1807191 caaatgtccatccacagatgaacggataaacagattatagagtgtgtgt-gtgtgtgtgtgtg- i cebCap1.NW_016107750v1 C 0 I 24 s aotNan1.NW_018512389v1 52444 61 - 704494 caaatgtccatccacagaagaacagataaacagattatggtatatgtat-acacacaacaat-- i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36360908 57 - 42659167 taaatgtccaccaacagatga----atggacatactgtgatatacacac-acactggaatat-- i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e saiBol1.JH378157 8934834 79 - 16357246 I e colAng1.NW_012115588v1 996642 1618 + 1946073 I a score=2143691.000000 s hg38.chr22_GL383582v2_alt 154692 233 + 162811 tattcagccatgaaaaggaatgaagtactcatacacaatacaatgtagataaatctcaaaacactacgcgctaagtgaaagaagtcagacatgaaaggtca--catattgtacgattccatcta-atgaaatatccaaaagaagtaaatctaaaaacacaaagcagatcggtggttgcaaaggactggcagaag-agggcaaggg-gagtaactgcttaatgggtagcaggtttactt s panTro5.chr22 28934230 233 + 37823149 tattcagccatgaaaaagaatgaagtactcatacacaatacaatgtagatcaatctcaaaacactatgcactaagtgaaagaagtcagacatgaaaggtca--catattgtacgattccatcta-atgaaatatccaaaagaagtaaatctaaaaacagaaagcagattggtggttgcaaaggactggcagaag-agggcaaggg-gagtaactgcctaatgggtagcaggtttactt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41208909 233 + 50109623 tattcagccatgaaaaggaatgaagtactcatacacaatacgatgtagataaatctcaaaacactatgcactaagtgaaagaagtcagacatgaaaggtca--catattgtacgattccatcta-atgaaatatccaaaagaagtaaatctaaaaacagaaagcagattggtggttgcaaaggactggcagaag-agggcaaggg-gagtaactgcttaatgggtagcaggtttactt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3231965 233 + 4464012 tattcagccatgaaaaggaatgaagtactcatacacaatacaatgtagataaatctcaaaacactacgcactaagtgaaagaagtcagacatgaaaggtca--catattgtacgattccatcta-atgaaatatccaaaagaagtaaatctaaaaacagaaagcagattggtggttgcaaaggactggcagaag-agggcaaggg-gagtaactgcttaatgggtagcaggtttactt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106725146 233 - 115148730 tattcagccatgaaaaggaatgaagtgctcatacacaatacgatgtagataaatctcaaaacactacgcacgaagtgaaataagtcggacatgaaaggtca--catattgcacaattccatcta-atgaaatatccaaaataagtaaatctaaagacagaaagcagattggtggttgcaaaggactgggagaag-agggcaaggg-gtgtaactgcttaataggtagcagttttattt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84343863 233 + 92844088 tatccagccatgaagaggaatgaagtactcatacacaatacaatgtagataaatctcaaaacactatgtactaagtgaaagaagccagacatgaaaagtca--tatattgtacgattccatcta-atgaaatatccaaagtaagtaaatctaaagacagaaagcagattggtagttgcaaaggactgggagaag-ggagcaaggg-gagtaactgcttaatgggtaccaagtttattt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87690218 233 - 96509753 tatccagccatgaagaggaatgaagtactcatacacaatacaatgtagataaatctcaaaacactatgtactaagtgaaagaagccagacatgaaaagtca--tatattgtacgattccatcta-atgaaatatccaaagtaagtaaatctaaagacagaaagcagattggtagttgcaaaggactgggagaag-ggagcaaggg-gagtaactgcttaatgggtaccaagtttattt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7187463 233 - 13098629 tatccagccatgaagaggaatgaagtactcatacacaatacaatgtagataaatctcaaaacactatgtactaagtgaaagaagccagacatgaaaagtca--tatattgtacgattccatcta-atgaaatatccaaagtaagtaaatctaaagacagaaagcagattggtagttgcaaaggactgggagaag-ggagcaaggg-gagtaactgcttaatgggtaccaagtttattt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4146792 233 - 4483953 tatccagccatgaagaggaatgaagtactcatacacaatacaatgtagataaatctcaaaacactatgtactaagtgaaagaagccagacatgaaaagtca--tatattgtatgattccatcta-atgaaatatccaaagtaagtaaatctaaagacagaaagcagattggtagttgcaaaggactgggagaag-ggagcaaggg-gagtaactgcttaatgggtaccaagtttattt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24777200 229 + 33263144 tatccagccatgaagaggaatgaagtactcatacacaatacaatgtagataaatctcaaaacactatgtcctaagtgaaagaaggcagacatgaaaagtca--tatattgtacgattccatcta-atgaaatatcca----aagtaaatctaaagacagaaagcagactggtagttgcaaaggactgggagaag-ggagcaaggg-gagtaactgcttaatgggtaccaagtttattt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14060967 233 - 14338769 tatccagccatgaagaggaatgaagtactcatacacaatacaatgtagataaatctcaaaacactatgtactaagtgaaagaagccagacatgaaaagtca--tatattgtacgattccatcta-atgaaatatccaaagtaagtaaatctaaagacagaaagcagattggtagttgcaaaggactgggagaag-ggagcaaagg-gagtaactgcttaatgggtaccaagtttattt i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2027180 235 - 2117846 tattcggccataaaaaggaacgaagtactcatacacaatacaatgtagattaatctcaaaacactacacattaagtgaaagaagccagacatgaaaggtca--catattctatgattccatctatatgtaacatccaaagtaagcaagtctagagacagaaggcagattggtggttccaaggggctgggagaagcggggcaaggt-gaacagcagcttaatggatactaggtttattt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8934913 233 - 16357246 tattcggccataaaaaggaatgaagtactcatacacaatacaatgtagattaatctcaaagcactatgcactaagtgaaagaagccagacatgaaaggtca--catattc--tgattccatctatatgtaatatccaaagtaagcaagtctagagacagaaagcagattggtggttccaaggagctgggagaaggggggcaaggg-gaataactgcttaatgggtactaggtttattt i saiBol1.JH378157 I 79 C 0 s cebCap1.NW_016107750v1 1421313 235 - 1807191 tattcggccataaaaaggaatgaagtacgcatacacaatacaatgtagattaatctcaaaacactaagcactaagtgaaagaagccagacatgaaaggtca--catattctatgattccatctatatgtaataaccaaagtaagcaagtctagagacagaaagcagattggtggttccaaggggctgggagaaggggggcaagga-gaataacagcttaatgggtactaggtttattt i cebCap1.NW_016107750v1 I 24 C 0 s aotNan1.NW_018512389v1 52505 234 - 704494 -aatcggccataaaaaggaatgaagtactcatacacaatacaatgtagattaatctcaaaatactatgcactaaatgaaagaagccagacatgaaaggtca--catattctatgattccatctatatgtaatatccaaagtaagcaagtctaaagacagaaagcagattggtggttccaaggggctgggagaaggagggcaaggg-gaataacagcttaatgggtactaggtttattt i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36360965 235 - 42659167 tattcagccataaaaaggaataaagtattcacacacattaaaatggagatagacctcaaaacaccctg--ctaaatgaaagaagccagacaggaaaagtcatgtgtgttgtatgattccatttacatgtaatatctaaaataagtaaatccacagacagaaagcaaaacagtggatgccaggggctgggagaag-gggggaaggacgaacaactgcttactgggtaccaggtttattt i otoGar3.GL873526 C 0 I 141 e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e colAng1.NW_012115588v1 996642 1618 + 1946073 I a score=568624.000000 s hg38.chr22_GL383582v2_alt 154925 70 + 162811 tgggactagatacaggttgttatgggtgcacacattgtgaatgcagcaaacgccactcgagtgttcgctt s panTro5.chr22 28934463 70 + 37823149 tgggactagatacaggttgttatgggtgcacacattgtgaatgcagcaaacgccactcgagtgttcactt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41209142 70 + 50109623 tgggactagatacaggttgttatgggtgcacacattgtgaatgcagcaaacgccacttgagtgttcgctt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3232198 70 + 4464012 tgggactagatacaggttgttatgggtgcacacattgtgaatgcagcaaatgccactcgagtgttcgctt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106725379 70 - 115148730 tgggactagatacaggttgtcatgggtgcacacattgtgaatgcagtaaatgccactcaagtgttcactt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84344096 70 + 92844088 tgggactagatacaggtcgtcatgggtgcacacattgtgaatgtagtaaatgccactcaagtgttccctt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87690451 70 - 96509753 tgggactagatacaggtcgtcatgggtgcacacattgtgaatgtagtaaatgccactcaagtgttccctt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7187696 70 - 13098629 tgggactagatacaggttgtcatgggtgcacacattgtgaatgtagtaaatgccactcaagtgttccctt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4147025 70 - 4483953 tgggactagatacaggtcgtcatgggtgcacacattatgaatgtagtaaatgccactcaagtgttccctt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24777429 70 + 33263144 tgggactagatacaggtcgtcatgggtgcacacattgtgaatgtagtaaatgccactcaagtgttccctt i chlSab2.chr19 C 0 I 338 s manLeu1.NW_012102031v1 14061200 70 - 14338769 tgggactagatacaggtcgtcatgggtgcacacattgtgaatgtagtaaatgccactcaagtgttccctt i manLeu1.NW_012102031v1 C 0 C 0 s calJac3.chrUn_GL286373 2027415 67 - 2117846 tgggactagatatag---gtcatgagtgtacacattgtgaatgcagtaaatgccactcaactgttcattt i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8935146 67 - 16357246 tgggactagatacag---gtcatgagtgtaaacattgtgaatgcagtaaatgccactcaactgttcattt i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1421548 67 - 1807191 tgggactagacatag---gtcatgagggtacgcattgtgaatgcagtaaatgccactcaactgttcattt i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 52739 67 - 704494 tgggactagatacag---gtcatgagtgtacacgctgtaaatgcagtaaatgccactcaactgttcattt i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e otoGar3.GL873526 36361200 141 - 42659167 I e colAng1.NW_012115588v1 996642 1618 + 1946073 I a score=54188.000000 s hg38.chr22_GL383582v2_alt 154995 7 + 162811 aaaaatg s panTro5.chr22 28934533 7 + 37823149 aaaaatg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41209212 7 + 50109623 aaaaatg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3232268 7 + 4464012 aaaaatg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106725449 7 - 115148730 aaaaatg i nomLeu3.chr7b C 0 I 299 s rheMac8.chr10 84344166 7 + 92844088 aaaaatg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87690521 7 - 96509753 aaaaatg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7187766 7 - 13098629 aaaaatg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4147095 7 - 4483953 aaaaatg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24777837 7 + 33263144 aaaaaTG i chlSab2.chr19 I 338 C 0 s manLeu1.NW_012102031v1 14061270 7 - 14338769 aaaaatg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 998260 7 + 1946073 aaaaata i colAng1.NW_012115588v1 I 1618 C 0 s calJac3.chrUn_GL286373 2027482 7 - 2117846 aaaaatg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8935213 5 - 16357246 aaaaa-- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1421615 5 - 1807191 aaaaa-- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 52806 7 - 704494 aaatatg i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e otoGar3.GL873526 36361200 141 - 42659167 I a score=3058453.000000 s hg38.chr22_GL383582v2_alt 155002 320 + 162811 attaattttgtcacgtgaatttcatatcaatttaaaaaaATCTggctgggcgcagtggctcacacctgtaatcccaacactttgggaggctgaggc-aggaggatcacttgagttcaggagttcaagaccagcctggacaacatggcgaaaccccatctctac---------------aaaaaaaaataccaaaatcagctgggcatggtggtgcgcacctgtaatcctagctactggggt-ggttgaggcacaagatttgcttcagcctgggaggcggagattgcagtgagccgtgatcatgccactgcactccagcctgggcaacagagccggat s panTro5.chr22 28934540 319 + 37823149 attaattttgtcacatgaatttcatatcaatttaaaaaaATCTggctgggcgcagtggctcacacctgtaatcccaacactttgggaggctgaggc-aggaggatcacttgagttcaggagttcaagaccagcctggacaacatggcgaaaccccatctctac----------------aaaaaaaataccaaaatcagctgggcatggtggtgcgcacctgtaatcctagctactggggt-ggttgaggcacaagatttgcttcagcctgggaggcggagattgcagtgagccgtgatcatgccactgcactccagcctgggcaacagagtcggat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41209219 319 + 50109623 attaattttgtcacgtgaatttcatatcaatttaaaaaaATCTggctgggcgcagtggctcacacctgtaatcccaacactttgggaggctgaggc-aggaggatcacttgagttcaggagttcaagaccagcctggacaacatggcgaaaccccatctctac----------------aaaaaaaataccaaaatcagctgggcatggtggtgcgcacctgtaatcctagctactggggt-ggttgaggcacaagatttgcttcagcctgggaggcggagattgcagtgagccgtgatcatgccactgcactccagcctgggcaacagagccggat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3232275 320 + 4464012 attaattttgtcacgtgaatttcatatcaatttaaaaaaATCTggctgggcgcagtggctcacacctgtaatcccaacactttgggaggctgaggc-aggaggatcacttgagttcaggagttcaagaccagcctggacaacatggcgaaaccccatctctac----------------aaaaaaaataccaaaatcagctgggcatggtggtgcgcacctgtaatcctagctactggggtgggctgaggcacaagatttgcttcagcctgggaggcagagattgcagtgagctgtgatcatgccactgcactccagcctgggcaacagagccggat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106725755 335 - 115148730 aatcattttgtcacgtgaatttcatatcaatttaaaaaaATCTggctgggcgcagtggctcacacctgtaatcccaacactttgggaggctgaggc-aggaggaccacttgagttcaggagttcaagaccagccctggacttttggtgaacccccatctctaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattagctgggcatggtggtgcacacctgtaatcccagctattggggt-ggttgaggcacaagattcgcttcagcctgggaggcggagattgcagtgagccgtgatcatgccactgcactccagcctgggcaacagagctggat i nomLeu3.chr7b I 299 C 0 s rheMac8.chr10 84344173 317 + 92844088 attaattttgtcacgtgaatttcatatcaatt-aaaaaaaTCTggctgggcgcagtggctcacacctgtaatcccaacactttgggaggctgaggc-aggaggatcacttgagttcaggagttcaagaccagcgtgggcaacatggcaaaaccccatctctac-----------------aaaaaagtaccaaaattaactgggcatggtggtgcgcacctgtaatcccagctactggggt-ggatgaggcacaagattcgcttcagcctgggaggcggagattgcagtgagtcgtgatcacaccactgcacttcagcctgggcaacagagccagat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87690528 317 - 96509753 attaattttgtcacgtgaatttcatatcaatt-aaaaaaaTCTggctgggcgcagtggctcacacctgtaatcccaacactttgggaggctgaggc-aggaggatcacttgagttcaggagttcaagaccagcgtgggcaacatggcaaaaccccatctctac-----------------aaaaaagtaccaaaattaactgggcatggtggtgcgcacctgtaatcccagctactggggt-ggatgaggcacaagattcgcttcagcctgggaggcggagattgcagtgagacgtgatcataccactgcacttcagcctaggcaacagagccagat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7187773 317 - 13098629 attaattttgtcacgtgaatttcatatcaatt-aaaaaaaTCTggctgggcgcagtggctcacacctgtaatcccaacactttgggaggctgaggc-aggaggatcacttgagttcaggagttcaagaccagcgtgggcaacatggcaaaaccccatctctac-----------------aaaaaagtaccaaaattaactgggcatggtggtgcgcacctgtaatcccagctactggggt-ggatgaggcacaagattcgcttcagcctgggaggtggagattgcagtgagacgtgatcacaccactgcacttcagcctgggcaacagagccagat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4147102 317 - 4483953 attaattttgtcacgtgaatttcatatcaatt-taaaaaaTCTggctgggcgcagtggctcacacctgtaatcccaacactttgggaggctgaggc-aggaggatcacttgagttcaggagttcaagaccagcgtgggcaacatggcaaaatcccatctctac-----------------aaaaaagtaccaaaattaactgggcatggtggtgcacacctgtaatcccagctactggggt-ggatgaggcacaagattcgcttcagcctgggaggcggagattgcagtgagacgtgatcacaccactgcacttcagcctgggcaacagagccagat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24777844 318 + 33263144 ATTAATTTTGTCACGTGAATTTCATATCAATTAAAAAAAATCTggctgggcacagtggctcacacctgtaatcccaacactttgggaggctgaggc-aggaggatcactcgagttcaggagttcaagaccagcgtgggcaacatggcaaaaccccgtttctac-----------------aaaaaagtaccaaaattaactgggcatggtggtgcacacctgtaaccccagctactggggt-ggatgaggcacaagattcgcttcagcctgggaggcggagattgcagtgagacgtgatcataccactatacttcagcctgggcaacagagccagat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14061277 317 - 14338769 attaattttgtcacgtgaatttcatatcaatt-taaaaaaTCTggctgggcgcagtggctcacacctgtaatcccaacactttgggaggctgaggc-aggaggatcacttgagttcaggagttcaagaccagcgtgggcaacatggcaaaaccccatctctac-----------------aaaaaagtaccaaaattaactgggcatggtggtgcacacctgtaatcccagctactggggt-ggatgaggcacaagattcgcttcagcctgggaggcagagattgcagtgagacgtgatcacaccactgcacttcagcctgggcaacagagccagat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 998267 318 + 1946073 attaattttgtcacgtgaatttcatatcaattaaaaaaaATCTggctgggcgcagtggctcacacctgtaatcccaacactttgggaagctgaggc-aggaggatcacttgagttcaggagttcaagaccagcccgggcaatatggcaaaaccccgtatctac-----------------aaaaaagtaccaaaagtaactggacatggtggtgagcacctgtaatcccagctactggggt-ggatgaggcacaagattcgcttcagcctgggaggtggagattgcagtgagacgtgatcacaccactgcacttcagcctgggcaacagagccagat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2027489 324 - 2117846 attaattttgtcacatgaatttcatatcaattaaaaaaaATCTggccgaatacagtggctcatgcctgtaatccaagtactttgggaggctgtgttcaggaggatcgcttgagttcaggagttcaagaccagcccgggcagcacggtgaaactccatctctac------------aaaaaaaaaaaccaccaaaattagctgggtgtggtggcacacacctgtaatcccagctactggggt-tgctgaggcacaagatttgcttcagcctggaaagcagaagttacagtgagctgtgatcatgccactgctctctagcccaggtgacagagccagac i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8935218 313 - 16357246 --taatttagtcatgtgaatttcgtatcaattaaaaaaaatctggccaaatacaatggctcacgcctgtaatccaagcactttgggaggctgtgtt-gggaggatcgcttgagttcaggagttcaagaccagcctaggcagcatggtgaaactccatctctac----------------aaaaaaaccaccaaaattagctgggtgtggtggcgcacacctgtaatcccagctactggggt-tgttgaggcacaagatttgcttcggcctgggaggcagaagttgcagtgagctgtgatcatgccactgcactccagcctaggtgacagagtc---- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1421620 317 - 1807191 --taattttgtcacgtgaatttcatatcaattaaaaaaaATCTggccaaatacagtggctcacacctgtaatccaagcactttgggagactgtgtc-aggaggatcacttgagttcaggagttcaagaccagcctaggcagcatggcgaaactccatctctac----------------aaaaaaaccaccaaaattagctgggtgtggtggcgcacacctgtaatcccagctactggggt-tgttgaggcacaagatttgcttcagcctgggaggcagaagttacagcgagctgtgatcatgccactgcactccagcctaggtgacagagctagac i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 52813 319 - 704494 attaattttgtcacgtgaatttcatatcaattaaaaaaaATCTGGGCAAATAcagtggctcatgcctataatccaagcactttgggaggctgtgtc-aggaggaccgcttgagttcaggagttcaagaccagcctgggcagcatggcgaaactctatctctac----------------aaaaaaaccaccaaaattagctgggtgtggtggcgcacacctgtaatcccagctactggggt-tgttgaggcacaagatttgcttcagcctgggaggcagaagttgcagtgagctgcgatcatgccactgcactccagcctaggtgacagagccagac i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 142127 22635 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e otoGar3.GL873526 36361200 141 - 42659167 I a score=26816.000000 s hg38.chr22_GL383582v2_alt 155322 16 + 162811 cctgtctcag----aagaga s panTro5.chr22 28934859 16 + 37823149 cctgtctcag----aagaga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41209538 16 + 50109623 cctgtctcag----aagaga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3232595 16 + 4464012 cctgtctcag----aaaaga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726090 10 - 115148730 cctgtctcag---------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84344490 10 + 92844088 actgtctcag---------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87690845 10 - 96509753 actgtctcag---------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188090 10 - 13098629 actgtctcag---------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4147419 10 - 4483953 actgtctcag---------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24778162 10 + 33263144 actgtctcag---------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14061594 10 - 14338769 actgtctcag---------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 998585 10 + 1946073 actgtctaag---------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2027813 20 - 2117846 tctgtcacaggaaaaaaaaa i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8935531 10 - 16357246 ----------tagaggaaga i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1421937 20 - 1807191 tctgtcacaggggaaaaaaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53132 18 - 704494 actgtcacag--gaaaaaaa i aotNan1.NW_018512389v1 C 0 C 0 s dasNov3.JH570235 164762 16 + 1056298 CCTTGTTCAA----ATGACG i dasNov3.JH570235 I 22635 C 0 e canFam3.chr10 46159829 5157 - 69331447 I e otoGar3.GL873526 36361200 141 - 42659167 I a score=760464.000000 s hg38.chr22_GL383582v2_alt 155338 99 + 162811 aaaagaaaaagaaaaaaaaTCTCTA-----AAAAGGTG----TAACTG---AGAAGAACCTAGGACATGCAAGAGCAAGTAATT--------CATTACATAGTCTTCCCCTTTAGTTAT s panTro5.chr22 28934875 99 + 37823149 aaaagaaaaagaaaaaaaaTCTCTA-----AAAAGGTG----TAACTG---AGAAGAACCTAGGACATGCAAGAGCAAGTAATT--------CATTACATAGTCTTCCCCTTTAGTTAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41209554 99 + 50109623 aaaagaaaaagaaaaaaaaTCTCTA-----AAAAGGTG----TAACTG---AGAAGAACCTAGGACATGCAAGAGCAAGTAATT--------CATTACATAGTCTTCCCCTTTAGTTAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3232611 98 + 4464012 aaaagaaaaagaaaaaaaaTCTCTA-----AAAAGGTG----TAACTG---AGAAGAACCTAGGACATGCAAGAGCAAGTAATT--------CATTACATAGTC-TCCCCTTTAGTTAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726100 99 - 115148730 aaaagaaaaagaaaaaaaaTCTCTA-----AAAAGGTG----TAACTG---AGAAGAACCTAGGACATGCAAGAGCAAGTAATT--------CATTACATAGTCTTCCCCTTTACTTAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84344500 87 + 92844088 aaaagaaaaaaaa-----aTATCTA-----AAAAGGTA----TAACTG---AGAAGAACCTAGGACATGCAAGAGTGAGTAATT--------CATTACATAGTCTTCCCCTT------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87690855 87 - 96509753 aaaagaaaaaaaa-----aTATCTA-----AAAAGGTA----TAACTG---AGAAGAACCTAGGACATGCAAGAGTGAGTAATT--------CATTACATAGTCTTCCCCTT------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188100 87 - 13098629 aaaagaaaaaaaa-----aTATCTA-----AAAAGGTA----TAACTG---AGAAGAACCTAGGACATGCAAGAGTGAGTAATT--------CATTACATAGTCTTCCCCTT------- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4147429 90 - 4483953 aaaagaaaaaaaa--aaTATATCTA-----AAAAGGTA----TAACTG---AGAAGAACCTAGGACATGCAAGAGTGAGTAATT--------CATTACATAGTCTTCCCCTT------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24778172 85 + 33263144 aaaaaaaacaa-------aTATCTA-----AAAAGGTG----TAACTG---AGAAGAACCCAGGACATGCAAGAGTGAGTAATT--------CATTACATAGTCTTCCCCTT------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14061604 90 - 14338769 aaaagaaaaaaaa--TATATATCTA-----AAAAGGTA----TAACTG---AGAAGAACCTAGGACATGCAAGAGTGAGTAATT--------CATTACATAGTCTTCCCCTT------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 998595 89 + 1946073 aaaaaaaaa---------aTATCT------AAAAGGTG----TAACCG---AGAAGAACCTAGGACATGCAAGAGTGAGTAATT--------CATTACATAGTCTTCCCCTTTAGTTAT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2027833 92 - 2117846 aaaaaaaggaaaagaaaaATCTTTT------AAAGGTC----TAATTG---AGA------TAGGACATGCAAGAGTAAGTAATT--------CATGACACAGCCTTCCCCTTTAGTCAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8935541 89 - 16357246 aaaaaaaggaaaagaaaaaTCTTTT-----AAAAGGTC--------TG---AGA------TAGGACATGCAAGAGTAAGTAATT--------CATGACACAGCCTTCCCCTTTAGTCAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1421957 89 - 1807191 aaaaaaaggaaaagaaaaATCTTTT-----AAAAGGTC--------TG---AGA------TAGGACATGCAAGAGTAAGTAATT--------CATGACACAGCCTTCCCCTTTAGTCAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53150 93 - 704494 aaaaaaaggaaaagaaaaaTCTTTT-----AAAAGGTC----TAAGTG---AGA------TAGGACATACCAGAGTAAGTAATT--------CATGACATAGCCTTCTCCTTTAGTCAT i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36361341 99 - 42659167 ataataataataaaaaaaatCTCCC-----AAAAGGTTATCTTAATCA---AGAAGAACCTAGGACTCCTGAGAGTAAGCGATT------------ACTTGGTTTCCTTCTTTAGCTAT i otoGar3.GL873526 I 141 C 0 s dasNov3.JH570235 164778 115 + 1056298 AGGATAAAAGAGGCCCAAATTCCCATATGAAGGAGGTA----TTCCTGCCTAGAAGAATCCAGGACACCCAAGAGTGAATAATTACATTACCAATAACTTGGTATTACCCTTTACTCAT i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46159829 5157 - 69331447 I a score=45901.000000 s hg38.chr22_GL383582v2_alt 155437 11 + 162811 CTCCCTTACTC s panTro5.chr22 28934974 11 + 37823149 CTCCCTTACTC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41209653 11 + 50109623 CTCCCTTACTC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3232709 11 + 4464012 CTCTCTTACTC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726199 11 - 115148730 CTCCCTTATTC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84344587 2 + 92844088 ---------TC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87690942 2 - 96509753 ---------TC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188187 2 - 13098629 ---------TC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4147519 2 - 4483953 ---------TC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24778257 2 + 33263144 ---------TC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14061694 2 - 14338769 ---------TC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 998684 11 + 1946073 CTCCCTGACTC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2027925 11 - 2117846 CTCCCTTACTC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8935630 11 - 16357246 CTCCCTTACTC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422046 11 - 1807191 CTCCCTTACTC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53243 11 - 704494 CTCCCTTACTC i aotNan1.NW_018512389v1 C 0 C 0 s dasNov3.JH570235 164893 11 + 1056298 CTCCTTAACCC i dasNov3.JH570235 C 0 I 283 e canFam3.chr10 46159829 5157 - 69331447 I e otoGar3.GL873526 36361440 0 - 42659167 C a score=1522494.000000 s hg38.chr22_GL383582v2_alt 155448 170 + 162811 CT-TTTTTTCTCTTTgtagctggga--ctaca---------------------------ggcatgcaccactatgcccggcta-tttttaattttgtagagacgaggtctcactatgctgcccag----------------------------------------------gctggtctccaacacctgggttcaagtgatcctcccacctagcatcccattgtaggcgtcaactactgtgtccagc s panTro5.chr22 28934985 170 + 37823149 CT-TTTTTTCTCTTTgtagctggga--ctaca---------------------------ggcatgcaccactatgcccggcta-tttttaattttgtagagacgaggtctcactatgctgcccag----------------------------------------------gctggtctccaacacctgggttcaagtgatcctcccacctagcatcccattgtaggcgtcaactactgtgtccagc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41209664 169 + 50109623 C--TTTTTTCTCTTTgtagctggga--ctaca---------------------------ggcatgcaccactatgcccggcta-tttttaattttgtagagacgaggtctcactatgctgcccag----------------------------------------------gctggtctccaacacctgggttcaagtgatcctcccacctagcatcccattgtaggcgtcaactactgtgtccagc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3232720 170 + 4464012 CT-TTTTTTCTCTTTgtagctggaa--ctaca---------------------------ggcatgcaccactatgcccggcta-tttttaattttgtcgagacgaggtctcactatgctgcccag----------------------------------------------gctggtctccaacacctgggttcaagtgatcctcccacctagcgtcccattgtaggcgtcaactactgtgtccagc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726210 199 - 115148730 CT-TTTTTTCTCTTTGTAGCTGGGACGCTACACTTATTCCTTTTTTTCTCTTTgtagctgagacgcaccactatgcccagcta-tttttaattttgtagagtcaaggtatcactatgctgcccag----------------------------------------------gctggtctccaacacctgggttccagtgatcctcccacctagcatcccattgtagatgtcaactactgtgtccagc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84344589 218 + 92844088 CTCTTCTTCCTCTTTgtagctggga--ctaca---------------------------ggcacgcaccactatgaccggctattttttaattttgtagagacaaggtctcactatgctgcccacgctgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatgttggccaggctggtctccaacacctgggttcaagtgatcctcccacctagcctcccactgtaggcgtgaaccactgtgtccagc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87690944 172 - 96509753 CTCTTCTTCCTCTTTgtagctggga--ctaca---------------------------ggcacgcaccactatgactggctattttttaattttgtagagacaaggtctcactatgctgcccac----------------------------------------------gctggtctccaacacctgggttcaagtgagcctcccacctagcctcccactgtaggcgtgaaccactgtgtccagc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188189 172 - 13098629 CTCTTCTTCCTCTTTgtagctggga--ctaca---------------------------ggcacgcaccactatgaccggctattttttaattttgtagagacaaggtctcactatgctgcccac----------------------------------------------gctggtctccaacacctgggttcaagtgatcctcccacctagcctcccactgtaggcgtgaaccactgtgtccagc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4147521 172 - 4483953 CTCCTCTTCCTCTTTgtagctggga--ctaca---------------------------ggtacgcaccactatgaccggctattttttaattttgtagagacaaggtctcactatgctgcccag----------------------------------------------gctggtctccaacacctgggttcaagtgatcctcccacctagcctcccactgtaggcgtgaaccactgtgtccagc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24778259 172 + 33263144 CTCCTCTTCCTCTTTgtagctggga--ctaca---------------------------ggcacgcaccactatgaccggctattttttaattttgtagagacaaggtctcactatgctgcccag----------------------------------------------gctggtctccaacacctgggttcaagtgatcctcccacctagcctcccaccgtaggcgtgaaccactgtgtccagc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14061696 172 - 14338769 CTCTTCTTCCTCTTTgtagctggga--ctaca---------------------------ggcacgcaccactatgaccggctattttttaattttgtagatacaaggtctcactatgctgcccag----------------------------------------------gctggtctccaacacctgggttcaagtgatcctcccacctagcctcccactgtaggcgtgaaccactgtgtccagc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 998695 172 + 1946073 CTCTTTTTCCTCTTTgtagctggga--ctaca---------------------------ggcacgcaccactactcccggctattttttaattttgtagagacaaggtctcactatgctgcccag----------------------------------------------gctggtctccaacacctgggttcaagtgatcctcccacctagcctcccattgtaggcgtgaaccactgtgtccagc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2027936 170 - 2117846 CT-TTTTATCTCTTagtagctggaa--ctaca---------------------------ggcgcataccactatgcctggcta-tttttactttcgtagagacgaggtctcactatgctgcccag----------------------------------------------aatggtctccaacacctgtgctcaagtgatcttcccatctagcctccgattataggcttgaaccactgttcccagA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8935641 170 - 16357246 CT-TTTTATCTCTTTgtagctggaa--ctaca---------------------------ggcgcataccactgtgcctggtta-tttttacttttgtagagacgagatctcactatgctgcccag----------------------------------------------gatgatctccaacacctgcgttcaagtgatcttcccatctagcctcccactacgggtgttaaccactgttcccagA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422057 170 - 1807191 CT-TTTTATCTCTTTgtagctggaa--ctaca----------------------------gcgcataccactgtgcctggctattttttacttttgtagagacgagatctcactatgctgcccag----------------------------------------------gatggtctccaacacctgcgctcaagtgatcttcccatctagcctcccactataggcgtgaaccactgTTGCCAGA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53254 163 - 704494 CT-TTTTATCTCTTTgtagctggaa--ctaca---------------------------ggcgcataccactatgcctggcta-tttttacttttgtagagacgaggtctcactatgctgcccag----------------------------------------------gatggtctctaacacctacactcaagtgatcttcccatctagcctcccaTTATAGG-------CACTGTTCCCAGA i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 164904 283 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I e otoGar3.GL873526 36361440 0 - 42659167 C a score=19110.000000 s hg38.chr22_GL383582v2_alt 155618 2 + 162811 cT s panTro5.chr22 28935155 2 + 37823149 cT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41209833 2 + 50109623 cT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3232890 2 + 4464012 cT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726409 2 - 115148730 cT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84344807 2 + 92844088 cT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691116 2 - 96509753 cT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188361 2 - 13098629 cT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4147693 2 - 4483953 cT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24778431 2 + 33263144 cT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14061868 2 - 14338769 cT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 998867 2 + 1946073 cT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028106 2 - 2117846 TT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8935811 2 - 16357246 TT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422227 2 - 1807191 TT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53417 2 - 704494 TT i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36361440 2 - 42659167 CT i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 164904 283 + 1056298 I e canFam3.chr10 46159829 5157 - 69331447 I a score=309716.000000 s hg38.chr22_GL383582v2_alt 155620 39 + 162811 CCTTTACTCCT-GTCTCATTCCCATGGCTACTCATCT-CGG s panTro5.chr22 28935157 39 + 37823149 CCTTTACTCCT-GTCTCATTCCCATGGCTGCTCATCT-CGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41209835 39 + 50109623 CCTTTACTCCT-GTCTCATTCCCATGGCTACTCATCT-CGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3232892 39 + 4464012 CCTTTACTCCT-GTCTCATTCCCATGGCTACTCATCT-CGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726411 39 - 115148730 CCTTTACTCCT-ATCTCATTCCCATGGCTATTCATCT-CGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84344809 35 + 92844088 CCTTTACAC-----CTCATTCCCATGGCTATGCATCT-CGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691118 35 - 96509753 CCTTTACAC-----CTCATTCCCATGGCTATGCATCT-CGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188363 35 - 13098629 CCTTTACAC-----CTCATTCCCATGGCTATGCATCT-CGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4147695 35 - 4483953 CCTTTACAC-----CTCATTCCCATGGCGATGCATCT-CGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24778433 35 + 33263144 CCTTTACAC-----CTCATTCCCATGGCTATGCATCT-TGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14061870 35 - 14338769 CCTTTACAC-----CTCATTCCCATGGCGATGCATCT-CGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 998869 35 + 1946073 CCTTTACGC-----CTCATTCCCATGGCTATGCATCT-CAG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028108 39 - 2117846 TCTTTACTCCT-GTCTCATTCTCATGGCTATTCATCT-TGG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8935813 39 - 16357246 TCTTTACTCCT-GTCTCATTCCCATGGCTATTCATCT-CGG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422229 39 - 1807191 TCTTTACTCCT-GTCTCATTCCCATGGCTATTCATCT-TGG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53419 39 - 704494 TCTTTACTCCT-GTCTCATTCCCATGGCTATTCATCT-GGG i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36361442 39 - 42659167 CCCTTACAACTGGCTTCATTTGCATGACAGTGAAACT-TA- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46164986 40 - 69331447 CCATCAATCCT-GGCTCCCTCCCATGACTTTCGATCTCCAG i canFam3.chr10 I 5157 C 0 e dasNov3.JH570235 164904 283 + 1056298 I a score=318274.000000 s hg38.chr22_GL383582v2_alt 155659 30 + 162811 CCCTGCAAAAACATGAAACGTGGAAGAACA s panTro5.chr22 28935196 30 + 37823149 CCCTGCAAAAACATGAAACGTGGAAGAACA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41209874 30 + 50109623 CCCTGCAAAAACATGAAACGTGGAAGAACA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3232931 30 + 4464012 CCCTGCAAAAACATGAAACGTGGAAGAACA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726450 14 - 115148730 CCCTGCAAAAACAT---------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84344844 30 + 92844088 CCCTGCAAAAACATGAAACGTGGAAGAACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691153 30 - 96509753 CCCTGCAAAAACATGAAACGTGGAAGAACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188398 30 - 13098629 CCCTGCAAAAACATGAAACGTGGAAGAACA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4147730 30 - 4483953 CCCTGCAAAAACATGAAACGTGGAAGAACA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24778468 30 + 33263144 CCCTGCAAAAACATGAAACGTGGAAGAACT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14061905 30 - 14338769 CCCTGCAAAAACATGAAACGTGGAAGAACA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 998904 30 + 1946073 CCCTGCAAAAACATGAAACGTGGAAGAACA i colAng1.NW_012115588v1 C 0 I 36 s calJac3.chrUn_GL286373 2028147 30 - 2117846 CCCTGCAAAAAGATGAAATGTGGAAGAATA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8935852 30 - 16357246 CCCTGCAAAAACATGAAATGTGGAAGAACA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422268 30 - 1807191 CCCCGCAAAAACATGAAATGTGGAAGAACA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53458 30 - 704494 CCCTGCAAAAACATGAAATGTGGAAGAACA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36361481 21 - 42659167 -TCTGCAAACACGT--------GAAGAACA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46165026 23 - 69331447 CCCTGGGAAA-------CTGAGGAAATACT i canFam3.chr10 C 0 I 2 s dasNov3.JH570235 165187 30 + 1056298 CCCTGCAATCACTTGATGTCCTAAAGAACA i dasNov3.JH570235 I 283 C 0 a score=12380.000000 s hg38.chr22_GL383582v2_alt 155689 4 + 162811 AGAT s panTro5.chr22 28935226 4 + 37823149 AGAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41209904 4 + 50109623 AGAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3232961 4 + 4464012 AGAT i gorGor5.CYUI01015375v1 C 0 C 0 s rheMac8.chr10 84344874 3 + 92844088 -GAA i rheMac8.chr10 C 0 I 33 s macFas5.chr10 87691183 3 - 96509753 -GAC i macFas5.chr10 C 0 I 33 s macNem1.NW_012012688v1 7188428 3 - 13098629 -GAC i macNem1.NW_012012688v1 C 0 I 33 s cerAty1.NW_011999588v1 4147760 3 - 4483953 -GAC i cerAty1.NW_011999588v1 C 0 I 33 s chlSab2.chr19 24778498 3 + 33263144 -GAT i chlSab2.chr19 C 0 I 33 s manLeu1.NW_012102031v1 14061935 3 - 14338769 -GAC i manLeu1.NW_012102031v1 C 0 I 33 s calJac3.chrUn_GL286373 2028177 4 - 2117846 AGAG i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8935882 4 - 16357246 AGAG i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422298 4 - 1807191 AGAG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53488 4 - 704494 ACAG i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36361502 4 - 42659167 AGAT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46165051 2 - 69331447 --AT i canFam3.chr10 I 2 I 2 s dasNov3.JH570235 165217 4 + 1056298 AGCT i dasNov3.JH570235 C 0 C 0 e colAng1.NW_012115588v1 998934 36 + 1946073 I e nomLeu3.chr7b 106726464 0 - 115148730 C a score=1912171.000000 s hg38.chr22_GL383582v2_alt 155693 150 + 162811 GCTATCCGGGAGGTTTCTAACACTAAATTAAATATTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGAGTCCTAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATA---TTGTGATACCTTCTGCAATGCCCTTTTA s panTro5.chr22 28935230 153 + 37823149 GCTATCCGGGAGGTTTCTAACACTAAATTAAATACTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGAGTCCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCAATGCCCTTTTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41209908 153 + 50109623 GCTATCCGGGAGGTTTCTAACACTAAATTAAATACTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGAGTCCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCAATGCCCTTTTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3232965 153 + 4464012 GCTATCCGGGAGGTTTCTAACACTAAATTAAATATTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGAGTCCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCAATGCCCTTTTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726464 146 - 115148730 -------GGGAGGTTTCTAACACTAAATTAAATATTGTTTCTTTGAACACTGACCTACTTCTCCTTTAAGAACTGAGCCCAAGTACTAAAAACTAACCTTTCACCATCATCTTTCTAAAACATTCTTGTGATACCTTCTGCAATGCCCTTTTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84344910 153 + 92844088 GCTATCTGGGAGGTTTCTAACACTAAACTAAATATTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGCGTGCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCTACGCCCTTTGA i rheMac8.chr10 I 33 C 0 s macFas5.chr10 87691219 153 - 96509753 GCTATCTGGGAGGTTTCTAACACTAAACTAAATATTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGCGTGCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCTACGCCCTTTGA i macFas5.chr10 I 33 C 0 s macNem1.NW_012012688v1 7188464 153 - 13098629 GCTATCTGGGAGGTTTCTAACACTAAACTAAATATTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGCGTGCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCTACGCCCTTTGA i macNem1.NW_012012688v1 I 33 C 0 s cerAty1.NW_011999588v1 4147796 153 - 4483953 GCTATCTGGGAGGTTTCTAACACTAAACTAAATATTGTTTCTTTGAAAACTGACCTACTTCTCCCTTAAGAACTGCGTGCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCTACACCCTTTGA i cerAty1.NW_011999588v1 I 33 C 0 s chlSab2.chr19 24778534 153 + 33263144 GCTATCTGGGAGGTTTCCAACACTAAATTAAATATTGTTTATTTGAACACTGACCTAATTCTCCCTTAAGAACTGCATGCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCTACACCTTTTGA i chlSab2.chr19 I 33 C 0 s manLeu1.NW_012102031v1 14061971 153 - 14338769 GCTATCTGGGAGGTTTCTAACACTAAACTAAATATTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGCGTGCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCTACGCCCTTTGA i manLeu1.NW_012102031v1 I 33 C 0 s colAng1.NW_012115588v1 998970 153 + 1946073 GCTATCTGGGAGGTTTCTAACACTAAATTAAATATTGTTTCTTTGAACACTGACCTGCTTCTCCCTTAAGAACTGCGTGCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCTACGCCCTTTGA i colAng1.NW_012115588v1 I 36 C 0 s calJac3.chrUn_GL286373 2028181 152 - 2117846 CCTATCTGAGAAGTTTCTAATGCTAAATACAA-ACTGTTTCTTTGAACACTGACCTACTTCTCTCTTAAGAACTGAGTGCAAGTACTAAAAACTAACCTTTCACCACCATCTTCCTAAAATATTCTTGTGATACCTTCTGCAATTCCCTTTTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8935886 153 - 16357246 CCTATCTGGGAAGTTTCTAACGCTAAATTCAATATTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGAGTGCAAGTACTAAAAACTAACCTTTCACCACCATCTTCCAAAAATATTCTTGTGATACCTTCTGCAATGCCCTTTTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422302 153 - 1807191 CCTATCTGGGAAGTTTCTAATGCTAAATTCAATATTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGAGTGCAAGTACTAAAAACTAACCTTTCACCACCATCTTCCTAAAATACTCTTGTGATACCTTCTGCAATGCCCTTTTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53492 153 - 704494 CCTATCTGGGAAGTTTCTAAAGCTAAATTCAATATTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGAGTTTAAGTACTAAAAATTAACCTTTCACCACCATCTTCCTAAAATATTCTTGTGATACTTTCTGCAATGCCCTTTTA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36361506 150 - 42659167 GCTATATGG---ATTTCAAACACTAAATTCACCATTGTCTCTTTGAACATTGACCTACTTCTCCCTTAAGATCTGAGTGCAAATACTAAAAACTAACTTTTCACCATCGTCTCCCAAAAATATCCTTGTGATACTTTCTGAGATGCCCATTTA i otoGar3.GL873526 C 0 I 281 s canFam3.chr10 46165055 138 - 69331447 GCTAT---GTAAATTTCTAACACTAAATTCACAATTGTTT-----AATACCGACATACTTCTCCTGTAAGATCTG------AGCACTAAAAGCTAACCTTTCATCATCATCATCCTAAAATATCTTTG-GATATCTTCTGCAACGCACATTTA i canFam3.chr10 I 2 C 0 s dasNov3.JH570235 165221 133 + 1056298 GCTATATAGGCTTCTTTTAGCACT-------------------TTAACACGGACCT-CTTCTCCCTTAAGACCTGAGCTCAAATACAAAAAGCTAATCTTTCACTATCATTTTCCTAAAATATTCTTGCGATACCTTCTGCAATGCTCATTTA i dasNov3.JH570235 C 0 C 0 a score=1451798.000000 s hg38.chr22_GL383582v2_alt 155843 141 + 162811 AGGGGGTCAAGACAATTCATGTAT----TCA-CCCTAAGACAGCTTCCTCCAGCGCGATGTCAACCTTTCTGCCCACCTGCTCAGGA---CCTCAATTT------TGCTAAGATCACTAGCTCTTACT----AAGCTTTGGTAGAATTAACCAATGTTT s panTro5.chr22 28935383 141 + 37823149 AGGGGGTCAAGACAATTCATGTAT----TCA-CCCTAAGACAGCTTCCTCCAGCGCAATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCAATTT------TGCTAACATCACTAGCTCTTACT----AAGCTTTGGTAGAATTAACCAATGTTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210061 141 + 50109623 AGGGGGTCAAGACAATTCATGTAT----TCA-CCCTAAGACAGCTTCCTCCAGCGCGATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCAATTT------TGCTAAGATCACTAGCTCTTACT----AAGCTTTGGTAGAATTAACCAATGTTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233118 141 + 4464012 AGGGGGTCAAGACAATTCATGTAT----TCA-CCCTAAGACAGCTTCCTCCAGCGCGATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCAATTT------TGCTAAGATCACTAGCTCTTACT----AAGCTTTGGTAGAATTAACCAATGTTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726610 145 - 115148730 AGGGGGTCAAGACAATTCATGTATTCACTCA-CCCTAAGACAGCTTCCTCCAGCACGATGCCAACCTTTCTGCCCACCTGCTCAGTA---CCTTGATTT------TGCTAAGATCACTAGCTCTTACT----AAGCTGTGGTAGAATTAACCAATGTTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345063 141 + 92844088 AGGGCCTCAAGACAATTCATGTAT----TCA-CCCTAAGACAGGTTCCTCCAGTGTGATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCGATTT------TGCCAAGATCGCTAGCTCTCACT----AAGCTTTACTAGAATTAACCAATGTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691372 141 - 96509753 AGGGCCTCAAGACAATTCATGTAT----CCA-CCCTAAGACAGGTTCCTCCAGTGTGATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCGATTT------TGCCAAGATCGCTAGCTCTCACT----AAGCTTTACTAGAATTAACCAATGTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188617 141 - 13098629 AGGGCCTCAAGACAATTCATGTAT----TCA-CCCTAAGACAGGTTCCTCCAGTGTGATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCGATTT------TGCCAAGATCGCTAGCTCTCACT----AAGCTTTACTAGAATTAACCAATGTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4147949 137 - 4483953 AGGGCCTCAAGACAATTCATGTAT----TCA-CCCTA----AGGTTCCTCCAGTGTGATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCAATTT------TGCCAAGATCGCTAGCTCTCACT----AAGCTTTACTAGAATTAACCAATGTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24778687 141 + 33263144 AGGGCGTCAAGACAATTCACGTAT----TCA-CCCTAAGACAGGTTCCTCCAGTGTGATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCGATTT------TGCCAAGATCGCTAGCTCTCACT----AAGCTTTACTAGAATTAACCAATGTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062124 141 - 14338769 AGGGCCTCAAGACAATTCATGTAT----TCA-CCCTAAGACAGGTTCCTCCAGTGTGATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCAATTT------TGCCAAGATCGCTAGCTCTCACT----AAGCTTTACTAGAATTAACCAATGTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999123 132 + 1946073 AGGGGGTCAAGACAATTCATGTAT----TCA-CCCTAAGGCAGGTTCCTGCAGCATGATGCCAACCTTTCTACCCACCTGCTCAGGA---CCTCGATTT------TGCCAAGATCGCTAGCTCTCACT----AAGCTTTTCTAGAATTAA--------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028333 145 - 2117846 AGGGAGTGAAAACAATTCATGTAC----TGA-CCCTAAGACAGCTTCCTCCTGCATGATGCCAACCTTTCTGCTCACCTGCTCAAGA---CCTCAATTT------TGCTAAGATCACTAGCTCTTACTCTTAATGTGTTTCTAGAATTAACCAAGGTTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8936039 146 - 16357246 AGGGGGTGAAAACAATTCATGTAC----TGATCCCTAAGACAGCTTCCTCCTGCACAATGCCAACCTTTCTGCCCACCTGCTCAAGA---CCTCGATTT------TGCTAAGACCACTAGCTCTTACTCTTAATGCGTTTCTAGAATTAACCAAGGTTT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422455 145 - 1807191 AGGCGGTGAAAACAATTCATGTAC----TGA-CCCTAAGACAGCTTCCTCCTGCACGATGCCAACCTTTCTGCCCACCTGCTCAAGA---CCTCGATTT------TGCTAAGATCACTAGCTCTTACTCTTAATGCATTTCTAGAATTAACCAAGGTTT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53645 145 - 704494 AGGGGGTGAAAACAATTCACGTAC----TGA-CCCTAAGACAGCTTCCTCCTGCACAATGCCAACCTTTCTGCCCACCTGCTCAAGA---CCTCGATTT------CGCTAAGATGACTAGTCCTTACTCTTAACGTGTTTCTAGAATTAACAAAGGTTT i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36361937 151 - 42659167 agagagaCAGAACAGTTTGTGTCT----TGA-CCCCAAGACACCTTCCTTCTGCATAATGCCAACCTTTCTGCCTACCTACTCAGGA---CCTCACCTCACCTAGTAATAAGATCATGAGTTTGTATTCTTATCACTTTTCTTGAATTAACCGATGTTT i otoGar3.GL873526 I 281 C 0 s canFam3.chr10 46165193 118 - 69331447 ----------------------AT----TGG-CT--------GCTTCCCACAGTATGATGCCAACTTTTCTGCCCACCTTCTTGGGATGTCCTCCATCT------TGCTAAGGTCACTGGTTCTGACCCCAACCACTTCTCCAGAATCAACCATTGTTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 165354 101 + 1056298 AGGGGGACAGGATAATGGATGTCT----TAC-CCCTATCTCAGCCTCTTGCT-CGTGATGCCAACTCTAATACCCTTGAGTTCAGAA---CCTCCATTA------TGTTA------------CTTACT------------------------------- i dasNov3.JH570235 C 0 C 0 a score=290509.000000 s hg38.chr22_GL383582v2_alt 155984 25 + 162811 TCTAGCGCCTTTCCCTCTCTATGGC s panTro5.chr22 28935524 25 + 37823149 TCTAGCGCCTTTCCCTCTCTATGGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210202 25 + 50109623 TCTAGCGCCTTTCCCTCTCTATGGC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233259 25 + 4464012 TCTAGCGCCTTTCCCTCTCTATGGC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726755 25 - 115148730 TCTAGCACCTTTCCCTCTCTATGGC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345204 25 + 92844088 TCTAGAGCCTTTCCCTCTCTATGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691513 25 - 96509753 TCTAGAGCCTTTCCCTCTCTATGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188758 25 - 13098629 TCTAGAGCCTTTCCCTCTCTATGGC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148086 25 - 4483953 TCTACAGCCTTTCCCTCTCTATGGC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24778828 25 + 33263144 TCTAGAGCCTTTCCCTCTCTATGGC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062265 25 - 14338769 TCTAGAGCCTTTCCCTCTCTATGGC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999255 18 + 1946073 -------CCTTTCCCTCTCTATGGC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028478 25 - 2117846 ACTAGCACTTTTCCCTCTCTATGGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8936185 25 - 16357246 TCTAGCACTTTTCCCTCTCTATGGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422600 25 - 1807191 TCTAGCACTTTTCCCTCTCTATGGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53790 25 - 704494 TCTAGCACTTTTCCCTCTCTATGGC i aotNan1.NW_018512389v1 C 0 C 0 s canFam3.chr10 46165311 25 - 69331447 CCTAGGGCTTTCCCTTCTCtatggc i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 165455 23 + 1056298 --TGGTACCTTCCCTTCTTCATGGC i dasNov3.JH570235 C 0 C 0 e otoGar3.GL873526 36362088 0 - 42659167 C a score=25128.000000 s hg38.chr22_GL383582v2_alt 156009 3 + 162811 CAA s panTro5.chr22 28935549 3 + 37823149 CAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210227 3 + 50109623 CAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233284 3 + 4464012 CAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726780 3 - 115148730 CAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345229 3 + 92844088 CAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691538 3 - 96509753 CAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188783 3 - 13098629 CAA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148111 3 - 4483953 CAA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24778853 3 + 33263144 CAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062290 3 - 14338769 CAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999273 3 + 1946073 CAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028503 3 - 2117846 CTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8936210 3 - 16357246 Cta i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422625 3 - 1807191 CTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53815 3 - 704494 CTA i aotNan1.NW_018512389v1 C 0 C 0 s canFam3.chr10 46165336 3 - 69331447 taa i canFam3.chr10 C 0 C 0 e dasNov3.JH570235 165478 0 + 1056298 C e otoGar3.GL873526 36362088 0 - 42659167 C a score=1450708.000000 s hg38.chr22_GL383582v2_alt 156012 151 + 162811 TTTTATTTTTAAATTTTat-----ttatgtattttttggagagaaggtctcactacgttgcccagactggtctccaactcctcg-cctcaagcaatcctccc-acctcagcc-cctgaatagatggaattacaggcatgagccaccacagccagcTCTA s panTro5.chr22 28935552 151 + 37823149 TTTTATTTTTAAATTTTat-----ttatgtattttttggagagaaggtctcactacgttgcccagactggtctccaactcctcg-cctcaagcaatcctccc-acctcagcc-tctgaatagatggaattacaggcatgagccaccacagccagcTCTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210230 151 + 50109623 TTTTATTTTTAAATTTTat-----ttatgtattttttggagagaaggtctcactacgttgcccagactggtctccaactcctcg-cctcaagcaatcctccc-acctcagcc-tctgaatagatggaattacaggcatgagccaccacagccagcTCTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233287 151 + 4464012 TTTTATTTTTAAATTTTat-----ttatgtattttttggagagaaggtctcactacgttgcccagactggtctccaactcctcg-cctcaagcaatcctccc-acctcagcc-tctgaatagatggaattacaggcatgagccaccacagccagcTCTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726783 150 - 115148730 TTTTAtttttaaattttat-----ttatgtattttttggagaggaggtctcactacgttgcccagactggtctccaactcct-g-cctcaagcaatcctccc-acctcagcc-tctgaatagatggaattacaggcatgggccaccacagccagcTCTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345232 152 + 92844088 TTTTATTTTCAAATGTTAT-----TTATGTACtttttggagaggaggtctcactacgttgcccaggctggtctccaactcctcg-cctcaagcaatcctccc-acctcagccttctgaatagatggaattataggcatgagcccccacagccagcTCTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691541 152 - 96509753 TTTTATTTTCAAATGTTAT-----TTATGTACtttttggagaggaggtctcactacgttgcccaggctggtctccaactcctcg-cctcaagcaatcctccc-acctcagccttctgaatagatggaattacaggcatgagcccccacagccagcTCTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188786 152 - 13098629 TTTTATTTTCAAATGTTat-----ttatgtactttttggagaggaggtctcactacgttgcccaggctggtctccaactcctcg-cctcaagcaatcctccc-acctcagccttctgaatagatggaattacaggcatgagcccccacagccagcTCTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148114 152 - 4483953 TTTTATTTTCAAATGTTat-----ttatgtactttttggagaggaggtcccactacgttgcccaggctggtctccaactcctcg-cctcaagcaatcctctc-acctcagccttctgaatagatggaattacaggcatgagcccccacagccagcTCTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24778856 152 + 33263144 TTTTATTTTCAAATGTTAT-----TTATGTACGttttggagaggaggtctcactacgttgcccaggctggtctccaactcctcg-cctcaagcaatcctccc-accgcagccttctgaatagatggaattacaggcatgagcccccacagccagcTCTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062293 153 - 14338769 TTTTAATTTCAAATGTTat-----ttatgtactttttggagaggaggtctcactacgttgcccaggctggtctccaactcctcgccctcaagcaatcctctc-acctcagccttctgaatagatggaattacaggcatgagcccccacagccagcTCTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999276 141 + 1946073 TTTTATTTTCAAATGTTat-----ttatgtattttttgaa----------tactacgttgcccaggctggtcttcaactcctcg-tctcaa-caatcctccc-acctcagccttccgaatagatggaattacaggcatgagcccccacAGCTAGCTCTA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028506 150 - 2117846 TTTTATTTTTAAATTATAt-----ttatgt--tttttggagaggaggtctcactatgttgcccaggctggtctccaactcctcg-tctcaagcaatcctccc-acctcaaccttctgaatagctggaataacaggcatgagccaccagatccagcTCTT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8936213 156 - 16357246 ttttattttaaaattatatttatattatGt--tttttggagagaaggtctcactatgttgccccggctggtctccaactcctcg-cctcaagcaatcctcccaacctcaacctcctgaatagctggaattacaggcatgagccaccacatccagcTCTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422628 150 - 1807191 TTTTATTTTTAAATTATAt-----ttatgt--tttttggagaggaggtctcactatgttgcccaggctggtctcaaactccttg-cctcaagcaatcctccc-acctcagcctcctgaatagctggaattacaggcatgagccaccacaaccagcTCTG i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53818 150 - 704494 TTTTATTTTTAAATTATAt-----ttatgt--tttttggagaagaggtctcactatgttgcccaggctggtctccaactcctcg-cctcaagcaatcctccc-acctcagcctcctgaagagctgcaattacaggcatgagccaccacatccagcTCTA i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 165478 0 + 1056298 C e canFam3.chr10 46165339 0 - 69331447 C e otoGar3.GL873526 36362088 0 - 42659167 C a score=38006.000000 s hg38.chr22_GL383582v2_alt 156163 4 + 162811 TGGT s panTro5.chr22 28935703 4 + 37823149 TGGT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210381 4 + 50109623 TGGT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233438 4 + 4464012 TGGT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726933 4 - 115148730 TGGT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345384 4 + 92844088 TCGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691693 4 - 96509753 TGGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188938 4 - 13098629 TGGT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148266 4 - 4483953 TGGT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24779008 4 + 33263144 TGGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062446 4 - 14338769 TGGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999417 4 + 1946073 TGGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028656 4 - 2117846 TGGC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8936369 4 - 16357246 TGGC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422778 4 - 1807191 TGGC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53968 4 - 704494 TGGC i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36362088 4 - 42659167 TTGC i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 165478 0 + 1056298 C e canFam3.chr10 46165339 0 - 69331447 C a score=3513.000000 s hg38.chr22_GL383582v2_alt 156167 3 + 162811 CA-A s panTro5.chr22 28935707 3 + 37823149 CA-A i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210385 3 + 50109623 CA-A i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233442 3 + 4464012 CA-A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726937 3 - 115148730 CA-A i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345388 3 + 92844088 CA-A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691697 3 - 96509753 CA-A i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188942 3 - 13098629 CA-A i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148270 3 - 4483953 CA-A i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24779012 3 + 33263144 CA-A i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062450 3 - 14338769 CA-A i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999421 3 + 1946073 CA-A i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028660 4 - 2117846 GGTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8936373 4 - 16357246 TGTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422782 4 - 1807191 CGTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53972 4 - 704494 TGTA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36362092 3 - 42659167 TA-A i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 165478 3 + 1056298 CA-A i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46165339 0 - 69331447 C a score=2061442.000000 s hg38.chr22_GL383582v2_alt 156170 164 + 162811 ATT-----------TTTACAACGTAttatcaatgatctag-ttgtctgtttcccacacaatactgttgaacaccctgaggacaagtactaggactCATCCCCAAACTCTGAA---------AAA----TGGTGCTTCTC----AGTCGTTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC s panTro5.chr22 28935710 164 + 37823149 ATT-----------TTTACAAtgtattatcaatgatctag-ttgtctgtttcccacacaatactgttgaacaccctgaggacaagtactaggactcatccCCAAACTCTGAA---------AAA----TGGTGCTTCTC----AGTCGTTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210388 164 + 50109623 ATT-----------TTTACAAtgtattatcaatgatctag-ttgtctgtttcccacacaatactgttgaacaccctgaggacaagtactaggactcatccCCAAACTCTGAA---------AAA----TGGTGCTTCTC----AGTTGTTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233445 164 + 4464012 ATT-----------TTTACAAtgtattatcaatgatctag-ttgtctgtttcccacacaatactgttgaacaccctgaggacaagtactaggactcatccCCAAACTGTGAA---------AAA----TGGTGCTTCTC----AGTCGTTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106726940 164 - 115148730 ATT-----------TTTACAAtgtattatcaatgatctag-ctgtctgtttcccacacaatactgttgaacaccctgaggacaagtactaggactcatccCCAAACTCTGAA---------AAA----TGGTGCTTCTC----AGTCATTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345391 165 + 92844088 ATT-----------CTTACAAtgtattatcaatgatctagtttgtctgtttcccatacaacactgctgaacacgctgaggacaagtactaggactcatccCCAAACTCTGAA---------AAA----TGGTGCTTCTC----AGTTGTTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691700 165 - 96509753 ATT-----------CTTACAAtgtattatcaatgatctagtttgtctgtttcccatacaacactgctgaacacgctgaggacaagtactaggactcatccCCAAACTCTGAA---------AAA----TGGTGCTTCTC----AGTTGTTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7188945 165 - 13098629 ATT-----------CTTACAATGTATTATCAATGATCTAGTTTGTCTGTTTCCCATACAACACTGCTGAACACGCTGAGGACAAGTACTAGGACTCATCCCCAAACTCTGAA---------AAA----TGGTGCTTCTC----AGTTGTTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148273 161 - 4483953 ATT-----------CTTACAATGTATTATCAATGATCTAGTT----TGTTTCCCATACAACACTGCTGAACACGCTGAGGACAAGTACTTGGACTCATCCCCAAACTCTGAA---------AAA----TGGTGCTTCTC----AGTTGTTTCCCCATTTGGTTTCTTTTCTTCTACTCCAAAATACTAGACCC i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24779015 164 + 33263144 ATT-----------CTTACAATGTATTATCAAAGATCTAG-TTGTCTGTTTCTCATACAACACTGCTGAACACGCTGAGGACAAGTACTAGGACTCATCCCCAAACTCTGAA---------AAA----TGGTGCTTCTC----AGTTGTTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062453 165 - 14338769 ATT-----------CTTACAAtgtattatcaatgatctagtttgtctgtttcccatacaacactgctgaacacgctgaggacaagtactaggactcatccCCAAACTCTGAA---------AAA----TGGTGCTTCTC----AGTTGTTTCCTCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999424 164 + 1946073 ATT-----------TTTACAATGTATTATCAATGATCTAG-TTGTCTGTTTCCCATACAACACTGTTGAACACGCTGAGGACAAGTACTAGGACTCATCCCCAAACTCTGAA---------AAA----TGGTGCTTCTC----AGTTGTTTCCCTATTTGGTTTCTTTTCTTCTACTCTAAAACACTAGACCC i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028664 162 - 2117846 ATT-----------TTTACAATGTCGTATCAATGATCTAG-TTA--TGTTTCCTACACAATACTGTTGAACACCCTTAGGACAAGTACTAGGACTCATCCCCAAACTCTGAA---------AAA----TGGTGCTTCTC----AGTCGTTTTCCCATTTGGTTTCTGTTCTTCTACTCTAAAATGCTAGACCC i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8936377 164 - 16357246 ATT-----------TTTACAATGTAGTATCCATGATCTAG-TTATCTGTTTCCTACACAATACTGTTGAACACCCTTAGAATAAGTACTAGGACTCATCCCCAAACTCTGAA---------AAA----TGGTGCTTCTC----AGTCGTTTCCCCATTTGGTTTCTGTTCTTCTACTCTAAAATGCTAGACCC i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1422786 162 - 1807191 ATT-----------TTTACAATGTAGTATCAATGATCTAG-GTATCTGTCTCCTACACAGTACTCCTGAACACCCTTAGGACAAGTACTAGGACTCATCCCCAA--CCTGAA---------AAA----TGGTGCTTCTC----AGTCGTTTCCCCATTTGGTTTCTGTTCTTCTACTCTAAAATGCTAGACCC i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 53976 164 - 704494 ATT-----------TTTACAAtgtagtatcaatgatctag-ttatctgtttcctacacaatactgttgaacacccttaggacaagtactaggactcatccCCAAACTCTGAA---------AAA----TGGTACTTCTC----AGTCGTTTCCCCATTTGGTTTCTATTCTTCTACTCTAAAATGTTAGACCC i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36362095 179 - 42659167 ATTTTTCTCAAAAGTTTACACTGTATCATCACGTATCTAA-TTGTCTGTTTCCTGCACTATATGGCTGAACCAGCTGAGGGCAAGTACTGGCACTCATCCCTGAACTCTGAA---------AAG----TGATGTTCCTCACCTAGTCATTTCCCCATCTGGTTTTCTGTCTTCTATTCTAAAATGCTAGATCC i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46165339 170 - 69331447 att-----------ttcataacgtattaatactgttctaacatgtctgtttccctcactatactgttgaacaccctgagggcaagtcctggaactCATCTCAGAACTCTGAA---------AAATAATTGCTGCTCCTCATCTAGTCGTTTCTCCATCTGGCTTCCTGTGTTCTAC---AGAAGAGCAGACCG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 165481 176 + 1056298 ATT-----------TTTACAATGTATTATCATTGATATG--TCATTTGTTTCCCTCACTATACTGTGGCATACCCTGAAGACCAGTCCTGAGACTCATCTCTGAACTCTGAAAACTCAAATAAG----TGGTGCTTCTCACCTAGTTATCTTCTCATCTGGTTTCTTGTCTTCTACTCCAAAATGTTAGATCC i dasNov3.JH570235 C 0 C 0 a score=24792.000000 s hg38.chr22_GL383582v2_alt 156334 3 + 162811 AAT s panTro5.chr22 28935874 3 + 37823149 AAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210552 3 + 50109623 AAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233609 3 + 4464012 AAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727104 3 - 115148730 AAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345556 3 + 92844088 AAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691865 3 - 96509753 AAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7189110 3 - 13098629 AAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148434 3 - 4483953 AAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24779179 3 + 33263144 AAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062618 3 - 14338769 AAt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999588 3 + 1946073 AAT i colAng1.NW_012115588v1 C 0 C 0 s cebCap1.NW_016107750v1 1422948 3 - 1807191 aat i cebCap1.NW_016107750v1 C 0 I 184 s otoGar3.GL873526 36362274 3 - 42659167 ACT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46165509 3 - 69331447 ACT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 165657 3 + 1056298 ACT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C a score=70839.000000 s hg38.chr22_GL383582v2_alt 156337 29 + 162811 TTGCTTAAttctttttc-----ttttttc----------------ttttt s panTro5.chr22 28935877 29 + 37823149 TTGCTTAAttctttttc-----ttttttc----------------ttttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210555 29 + 50109623 TTGCTTAAttctttttc-----ttttttc----------------ttttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233612 31 + 4464012 ATGCTTAAttctttttc-----ttttttctt--------------ttttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727107 18 - 115148730 ATGCtt----------------ttttttt----------------ttttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345559 45 + 92844088 ATGCTTAATTCTTTTTC-----GTTtttttgtttgttttgttttgttttg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691868 41 - 96509753 ATGCTTAATTCTTTTTC-----Atttt----tttgttttgttttgttttg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7189113 45 - 13098629 ATGCTTAATTCTTTTTC-----GTTtttttgtttgttttgttttgttttg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148437 43 - 4483953 ATGCTTAATTCTTTTTC-----Gtttttttgtttgttttgttttg--ttg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24779182 40 + 33263144 ATGCTTAACTCTTTTTC-----Gtttttttg-----tttgttttgttttg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062621 45 - 14338769 atgcttaattctttttc-----gtttgtttgtttgttttgttttgttttg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999591 40 + 1946073 ATGCTTAATTCTTTTTC-----Gtttttttg-----tttgttttgttttg i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36362277 29 - 42659167 ATACTTGATTCTTTATC-----TATAGCT----------------TTTTT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46165512 2 - 69331447 -------AT----------------------------------------- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 165660 29 + 1056298 GTACTACATTCTTTACCTACAATTTTTTT--------------------- i dasNov3.JH570235 C 0 I 10 e aotNan1.NW_018512389v1 54140 0 - 704494 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C a score=29037.000000 s hg38.chr22_GL383582v2_alt 156366 5 + 162811 tttct s panTro5.chr22 28935906 5 + 37823149 tttct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210584 5 + 50109623 tttct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233643 5 + 4464012 tttct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727125 5 - 115148730 ttcct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345604 5 + 92844088 ttttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691909 5 - 96509753 ttttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7189158 5 - 13098629 ttttt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148480 5 - 4483953 ttttt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24779222 5 + 33263144 ttttt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062666 5 - 14338769 ttttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999631 5 + 1946073 ttttt i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36362306 5 - 42659167 TTTCT i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 165689 10 + 1056298 I e canFam3.chr10 46165514 0 - 69331447 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C a score=794002.000000 s hg38.chr22_GL383582v2_alt 156371 144 + 162811 gagat-ggagtctcactctgtcacccaggctggagtgcactggtgtgatcttggctcactgcaacctccacctaccaggttcaagtgattctcttacctcagcctccgtgtagctggcgttacagg---------cgcatgccaccacgcccag s panTro5.chr22 28935911 144 + 37823149 gagat-ggagtctcactctgtcacccaggctggagtgcactggtgtgatcttggctcactgcaacctccacctaccaggttcaagtgattctcttacctcagcctccgtgtagctggcgttacagg---------cgcatgccaccacgcccag i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210589 144 + 50109623 gagat-ggagtctcactctgtcacccacgctggagtgcactggtgtgatcttggctcactgcaacctccacctaccaggttcaagtgattctcttacctcagcctccgtgtagctggcgttacagg---------cgcatgccaccacgcccag i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233648 144 + 4464012 gagat-ggagtctcactctgtcacccaggctggagtgcactggtgtgatcttggctcactgcaacctccacctcccaggttcaagtgattctcttacctcagcctccgtgtagctggcgttacagg---------cgcatgccaccacgcccag i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727130 141 - 115148730 gagataagagt----ctctgtcacccaggctggagtgcactggcatgatcttggctcactgcaacctccacctcccaggttcaagtgattctcttacctcagcctccgtgtagctggcattacagg---------cgcatgctaccacgcccag i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345609 144 + 92844088 gagat-ggagtctcactctgtcacccaggctgatgggcactggcatgatcttggctcactgcaacctccacctcccaggttcaagcgattctcttacctcagcctccgtgtagctggcattacagg---------cacatgttaccacgcccag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87691914 144 - 96509753 gagat-ggagtctcactctgtcacccaggctgatgggcactggcatgatcttggctcactgcaacctccacctcccaggttcaagcgattctcttacctcagcctccgtgtagctggcattacagg---------cacatgttaccacgcccag i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7189163 144 - 13098629 gagat-ggagtctcactctgtcacccaggctgatgggcactggcatgatcttggctcactgcaacctccacctcccaggttcaagcgattctcttacctcagcctccgtgtagctggcattacagg---------cacatgttaccacgcccag i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148485 144 - 4483953 gagat-ggagtctcactctgtcacccaggctgatgggcactggcatgatcttggctcactgcaacctccacctcccaggttcaagcgattctcttacctcagcctccgtgcagctggcattacagg---------cacatgttaccacgcccag i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24779227 153 + 33263144 gagat-ggagtctcactctgtcacccaggctgatgggcactggcatgatcttggctcactgcaacctccacctcccaggttcaagtgattctcttacctcagcctccgtgtagctggcattacaggcacatgttacacatgttaccacgcccag i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062671 144 - 14338769 gagat-ggagtctcactctgtcacccaggctgatgggcactggcatgatcttggctcactgcaacctccacctcccaggttcaagcgattctcttacctcagcctccgtgtagctggcattacagg---------cacatgttaccacgcccag i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999636 144 + 1946073 gagat-ggagtctcactctgtcacccaggctgatgggcactggcatgatcttggctcactgcaacctccacctctcaggttcaggcgattctcttacctcagcctccgtgtagctggcattacagg---------cacatgttaccacgcccag i colAng1.NW_012115588v1 C 0 C 0 s canFam3.chr10 46165514 37 - 69331447 ---------------------------------------------------------ACTTCATTCTTTACCTATC--------------------CCTCGCCCTCC----------------------------------------TGCCCAA i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 165689 10 + 1056298 I e otoGar3.GL873526 36362311 0 - 42659167 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C a score=813045.000000 s hg38.chr22_GL383582v2_alt 156515 148 + 162811 ctaactttcgtatttttggtagagacagggtttcgccatgttggccaggctggtcttaaactctttacct--cacctcaagtgacccatccgcctcggcctcccaaagtgctggga-tacaggcatgagtcaccaggcctggccTCAATAT s panTro5.chr22 28936055 148 + 37823149 ctaactttcgtatttttggtagagacagggtttcgccatgttggccaggctggtcttaaactctttacct--cacctcaagtgacccacccgcctcggcctcccaaagtgctggga-tacaggcatgagtcaccaggcctggccTCAATAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210733 148 + 50109623 ctaactttcgtatttttggtagagacagggtttcgccatgttggccaggctggtcttaaactctttacct--cacctcaagtgacccacccgcctcggcctcccaaagtgctggga-tacaggcatgagtcagcaggcctggccTCAATAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233792 150 + 4464012 ctaactttcgtatttttggtagagacagggtttcgccatgttggccaggctggtcttgaactctttacctcacacctcaagtgacccacccgcctcggcctcccaaagtgctggga-tacaggcatgagtcaccaggcctggccTCAATAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727271 147 - 115148730 ctaactttcgtatttttagtagagacacggtttcgccatgttggccaggctggtcttgaactctttacct--cacctcaagtga-ccacccgctttggcctcccaaagtgctggga-tacaggcatgaatcaccaggcctggccTCAATAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345753 145 + 92844088 ctaactttcatatttttagtagagatgcggtttcgccatgttgaccaggctggtcttgaactcttt------tacttcaagtgactcacccgcctcggcctcccaaagtgctgggattacaggcatgagtcaccaggcctggccTCAATAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87692058 145 - 96509753 ctaactttcatatttttagtagagatgcggtttcgccatgttgaccaggctggtcttgaactcttt------tacttcaagtgactcacccgcctcggcctcccaaagtgctgggattacaggcatgagtcaccaggcctggccTCAATAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7189307 145 - 13098629 ctaactttcatatttttagtagagatgcggtttcgccatgttgaccaggctggtcttgaactcttt------tacttcaagtgactcacccgcctcggcctcccaaagtgctgggattacaggcatgagtcaccaggcctggccTCAATAT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148629 145 - 4483953 ctaactttcatatttttagtagagatggggtttcgccatgttgaccaggctggtcttgaactcttt------tacttcaagtgactcacccgcctcggcctcccaaagtgctgggattacaggcatgagtcaccaggcttggccTCAATAT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24779380 145 + 33263144 ctaactttcatatttttagtagagatggggtttcgccatgttgaccaggctggtcttgaactcttt------tacttcaagtgactcacccgcctcggcctcccaaagtgctgggattacaggcatgagtcaccaggtctggccTCAATAT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062815 145 - 14338769 ctaactttcatatttttagtagagatggggtttcgccatgttgaccaggctggtcttgaactcttt------tacttcaagtgactcacccgcctcggcctcccaaagtgctgggattacaggcatgagtcaccaggcctggcctcaatat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999780 145 + 1946073 ttaactttcatatttttagtagagatggggtttcgccatgttgaccaggctggtcttgaactcttt------tacctcaagtgacccacccgcctcggcctcccaaagtgctgggattacaggcatgagtcatcaggcctggccTCAATAT i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 165689 10 + 1056298 I e canFam3.chr10 46165551 0 - 69331447 C e otoGar3.GL873526 36362311 0 - 42659167 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C a score=167928.000000 s hg38.chr22_GL383582v2_alt 156663 32 + 162811 ACTTAATTCTTTACCTACATTGTTTCTCCTGG s panTro5.chr22 28936203 32 + 37823149 ACTTAATTCTTTACCTACATTGTTTCTCCTGG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210881 32 + 50109623 ACTTAATTCTTTACCTACATTGTTTCTCCTGG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233942 32 + 4464012 ACTTAATTCTTTACCTACATTGTTTCTCCTGG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727418 32 - 115148730 ACTTAATTCTTTACCTACATAGTTTCTCCCGG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345898 32 + 92844088 ACTTAATTCTTTACCTACATTGTTTTTCATGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87692203 32 - 96509753 ACTTAATTCTTTACCTACATTGTTTTTCATGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7189452 32 - 13098629 ACTTAATTCTTTACCTACATTGTTTTTCATGG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148774 32 - 4483953 ACTTAATTCTTTACCTACATTGTTTTTCATGG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24779525 32 + 33263144 ACTTAATTCTTTACCTACATTGTTTTTCATGG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062960 32 - 14338769 acttaattctttaCCTACATTGTTTTTCATGG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999925 32 + 1946073 ACTTAATTCTTTACCTACATTGTTTTTCATGG i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36362311 8 - 42659167 -------------------TGGTTTTT----- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46165551 11 - 69331447 ACTCAGCTTTT--------------------- i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 165689 10 + 1056298 I e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C a score=1212404.000000 s hg38.chr22_GL383582v2_alt 156695 183 + 162811 CTTCAAAAAGCTTCCTGACCACCAAA----ACTAATCCTTGGAAAAGGACAAGTCTTCCCTACACCAAAACTAAATACCA----TTG---TTTGCCTTTTTCTCGTACG--TGTTTTTCTCTACCTCTAAAATGATT----GCTTGTTCATGTGTTCAATGCACCGTAGAGGATACGGCAAGTGCCAATACCATAAT-CTT s panTro5.chr22 28936235 183 + 37823149 CTTCAAAAAGGTTCCTGACCACCAAA----ACTAATCCTTGGAAAAGGATAAGTCTTCCCTACACCAAAACTAAATACCA----TTG---TTTGCCTTTTTCTCGTACG--TGTTTTTCTCTACCTCTAAAATGATT----GCTTGTTCATGTGTTCAATGCACCGTAGAGGATACGGCAAGTGCCAATACCATAAT-CTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41210913 183 + 50109623 CTTCAAAAAGGTTCCTGACCACCAAA----ACTAATCCTTGGAAAAGGATAAGTCTTCCCTACACCAAAACTAAATACCA----TTG---TTTGCCTTTTTCTCGTACG--TGTTTTTCTCTACCTCTAAAATGATT----GCTTGTTCATGTGTTCAATGCACCGTAGAGGATACGGCAAGTGCCAATACCATAAT-CTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3233974 186 + 4464012 CTTCAAAAAGGTTCCTGACCACCAAA----ACTAATCCTTGGAAAAGGAGAAGACTTCCCTACACCAAAACTAAATACCA----TTGATTGTTGCCTTTTTCTCGTACT--TGTTTTTCTCTACCTCTAAAATGATT----GCTTGTTCATGTGTTCAATGCACTGTAGAGGATACGGCAAGTGCCAACACCATAAT-CTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727450 182 - 115148730 CTTCAAAAAGGTTCCCCACCACCAAA----ACTAATCCTTGGAAAAGGACAGGTCTTCCCTACACCAAAACTAAATATCA----TTG---TTTGACTTTTTTTCCTAC---TGTTTTTCTCTGCCTCTAAAATGATT----GTTTGTTCATGTGTTCAATGCACCGTAGAGGATACGGCAAGTACCAATACCATAAT-CTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84345930 184 + 92844088 CTTCAAAAAGGTTCCTAACCACCAAA----ACTAATCCTCGGCAAAGGACAAGTCTTCCCTACGCCAAAACGAAATACCAC---TTG---TTTGTCTTTTTTT-CTACA-TTGTTTTTCTCTACCTCTAAAATGATT----GTTTGTTCATGTGTTCAATGGACTGTAAAGGATATGGCAGCGGACAATACCATAAT-CTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87692235 184 - 96509753 CTTCAAAAAGGTTCCTAACCACCAAA----ACTAATCCTCGGCAAAGGACAAGTCTTCCCTACGCCAAAACGAAATACCAC---TTG---TTTGTCTTTTTTT-CTACA-TTGTTTTTCTCTACCTCTAAAATGATT----GTTTGTTCATGTGTTCAATGGACTGTAAAGGATATGGCAGCGGACAATACCATAAT-CTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7189484 184 - 13098629 CTTCAAAAAGGTTCCTAACCACCAAA----ACTAATCCTCGGCAAAGGACAAGTCTTCCCTACGCCAAAACGAAATACCAC---TTG---TTTGTCTTTTTTT-CTACA-TTGTTTTTCTCTACCTCTAAAATGATT----GTTTGTTCATGTGTTCAATGGACTGTAAAGGATATGGCAGCGGACAATACCATAAT-CTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148806 184 - 4483953 CTTCAAAAAGGTTCCTGACCACCAAA----ACTAATCCTCGGCAAAGGACAAGTCTTCCCTACGCCAAAACGAAATACCAT---TTG---TTTGTCTTTTTTT-CTACA-TTGTTTTTCTCTACCTCTAAAATGATT----GTTTGTTCATGTGTTCAATGGACTGTAAAGGATATGGCAGGGGACAATACCATAAT-CTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24779557 185 + 33263144 CTTCAAAAAGGTTCCTGACCACCAAA----ACTAATCCTTGGCAAAGGACAAGTCTTCCCTACGCCAAAACGAAATACCAC---TTG---TTTGTCTTTTTTTCCTACA-TTGTTTTTCTCTACCTCTAAAATGATT----GTTTGTTCATGTGTTCAATGGACTGTAAAGGATATGGCAGGGGACAATACCATAAT-CTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14062992 184 - 14338769 CTTCAAAAAGGTTCCTGACCACCAAA----ACTAATCCTCGGCAAAGGACAAGTCTTCCCTACGCCAAAACGAAATACCAC---TTG---TTTGTCTTTTTTT-CTACA-TTGTTTTTCTCTACCTCTAAAATGATT----GTTTGTTCATGTGTTCAATGGACTGTAAAGGATATGGCAGGGGACAATACCATAAT-CTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 999957 184 + 1946073 CTTCAAAAAGGTTCCTGACCACCAAA----ACTAATCCTCGGCAAAGGACAAGTCTTCCCTATGCCAAAATGAAATACCAC---TTG---TTTGTCTTTTTTTCCTACA--TGTTTTTCTCTACCTTTAAAATGACT----GTTTGTTCATGTGTTCAATGGACTGTAAAGGATACGGCAGGGGACAATACCATAAT-CTT i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36362319 188 - 42659167 CTTCAAAAAGGTTCCTGACCACTAAA----AC-AATCCCTGGCTAAGGATAAG-CCTCCCCATGTGAAAACTAGGTACCATTAATTT---TCTCTCTTATTTTTCTACATTTATTCTTCCTTACCTCAAAAGTTACTC---AGTTTTTTATGTGTTCAATGCACTGCAAGAAATACAAGGAATGATACTGCCATAAT-CCT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46165562 187 - 69331447 CTTCAAAAAGATTCCC--CCACCAAA----AC-AATCCTTGAACAAGGACAAGTCTTACCTGTGCCAAAACTAAATGCCA----TTA---ATTCTATCTTTTGTCTACCTTTGTTCTTCTCTACTTCAAAAACTATTCACAGTCTGCTCACATATTCAGTGCACCACAGAGAATATAAGGAGTGTTGACACTATAATCCTT i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 165699 191 + 1056298 CTTCAAAAAGGTTCCTGACCACCAACCAGTAC-AATCCCTGGTTAAGGGCAAGCCCTCCCTGTCTCCAAATCAAATACCA----TTAAT-TCTGTCTTTTTTTCTCCCT-TTGTTCTTCTCCACTTCAAAAAGTATTCA--GGGTGCACACATGTTTAATGCAATTGTACTGATACAAGGAGTGGAAACACAACAAT-TCT i dasNov3.JH570235 I 10 I 28 e aotNan1.NW_018512389v1 54140 0 - 704494 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C a score=270037.000000 s hg38.chr22_GL383582v2_alt 156878 41 + 162811 GCCCTCAGGGAGGACTGGGGAAGGAGGGCAAGAAC---------ACATTT s panTro5.chr22 28936418 41 + 37823149 GCCCTCAGGGAGGACTGGGGAAGGAGGGCAAGAAC---------ACATTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211096 41 + 50109623 GCCCTCAGGGAGGACTGGGGAAGGAGGGCAAGAAC---------ACATTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234160 41 + 4464012 GCCCTCAGGGAGGACTGGGGAAGGAGGGCAAGAAC---------ACATTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727632 24 - 115148730 GCCCTCAGGGAGGACTGGGGAAGG-------------------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84346114 41 + 92844088 GCCCTCAGGGAGGACTGCGGGAGGAGGGCAAGAAC---------ACGTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87692419 41 - 96509753 GCCCTCAGGGAGGACTGCGGGAGGAGGGCAAGAAC---------ACGTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7189668 41 - 13098629 GCCCTCAGGGAGGACTGCGGGAGGAGGGCAAGAAC---------ACGTTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4148990 41 - 4483953 GCCCTCAGGGAGGACTGCGGGAGGAGGGCAAGAAT---------ACGTTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24779742 41 + 33263144 GCCCTCAGGGAGGACTGCGGAAGGAGGGCAAGAAC---------ACGTTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14063176 41 - 14338769 GCCCTCAGGGAGGACTGCGGGAGGAGGGCAAGAAC---------ACGTTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1000141 50 + 1946073 GCCCTCAGGGAGGGCTGCGGAAGGAGGGCAAGAACACCTATTATACCTTT i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36362507 41 - 42659167 GCCCTCAAAGAGGACTGGAGAAGGAGGACAAGAAC---------ATGTTT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46165749 41 - 69331447 GCCTTCAAAGAGGACTGGGGAAGAAGGGCGAGAAC---------ACGTTC i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 165890 28 + 1056298 I e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C a score=1721907.000000 s hg38.chr22_GL383582v2_alt 156919 292 + 162811 AGAAAGGTATAATAggctg-----------ggcac-----ggtggctc-acgcctgtaatcccagcattttgggaggctgaggcaggcagatcac--------gaggtcaggagtttgagaccagcctggccaacatggtga-aacgccatctctaccaaaaatacaaaaattagccaggcgtggtggcgggtgcctgtaatcccagctacttgggaggctgatgcaggagaactgcttgaacctgggaagcaggggttgcagtgagccgagattgcgccactgcactccagcctgggggacagagcaagactctgtc s panTro5.chr22 28936459 300 + 37823149 AGAAAGGTATAATAggctg-----------ggcac-----ggtggctc-acgcctgtaatcccagcattttgggaggctgaggcaggcagatcacgaggtcaggaggtcaggagtttgagaccagcctggccaacatggtga-aacgccgtctctaccaaaaatacaaaaattagccaggcgtggtggcgggtgcctgtaatcccagctacttgggaggctgatgcaggagaattgcttgaacctgggaagcaggggttgcagtgagccgagattgcgccactgcactccagcctgggggacagagcaagactctgtc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211137 292 + 50109623 AGAAAGGTATAATAggctg-----------ggcac-----ggtggctc-acgcctgtaatcccagcattttgggaggctgaggcaggcagatcac--------gaggtcaggagtttgagaccagcctggccaacatggtga-aacgccgtctctaccaaaaatacaaaaattagccaggcatggtggcgggtgcctgtaatcccagctacttgggaggctgatgcaggagaattgcttgaacctgggaagcaggggttgcagtgagccgagattgcgccactgcactccagcctgggggacagagcaagactctgtc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234201 292 + 4464012 AGAAAGGTATAATAggctg-----------ggcac-----ggtggctc-acgcctgtaatcccagcattttgggaggctgaggcaggcggatcac--------gaggtcaggagtttgagaccagcctggccaacatggtga-aatgccgtctctaccaaaaatacaaaaattagccaggcttggtggcggatgcctataatcccagctacttgggaggctgatgcaggagaattgcttgaacctgggaagcaggggttgcagtgagccaagattgggccactgcactccagcctgggggacagagcaagactctgtc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727656 288 - 115148730 ----AGGTATAATAggccg-----------ggcac-----ggtggctc-atgcctgtaatcccagcattttgggaggttgaggcggacagatcac--------gagatcaggagtttgagaccagcctggccaacatggtga-aatactgtctctactaaaaatacaaaaattagccaggggtggtggtgggtgcctgtaatcccagctactcaggaggctgatgcaggagaatcgcttgaatttgggaggcaggggttgcagtgagccgagattgcgccactgcactccagcctgggggacagagcaagactccgtc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84346155 292 + 92844088 AGAAAGGTATAATAggccg-----------ggcac-----agtggctc-atgcctgtaatcccagcattttgggaggccgaggtgggcggatcac--------aaggtcaggagtttgagattagcctggccaacacggtga-aatctcgtctctactaaaaacacaaaaattagcacggcgtggtggcaggtgcctgtaataccagctactctggaggctgatgcaggagaatcacctgaacccgggaggcaggggttgcagtgagccaagactgcactactgcactccagcctgggggacagagcaagactccatc i rheMac8.chr10 C 0 I 11 s macFas5.chr10 87692460 292 - 96509753 AGAAAGGTATAATAggccg-----------ggcac-----agtggctc-atgcctgtaatcccagcattttgggaggccgaggtgggcggatcac--------aaggtcaggagtttgagattagcctggccaacacggtga-aatctcgtctctactaaaaacacaaaaattagcacggcgtggtggcaggtgcctgtaataccagctactctggaggttgatgcaggagaatcacctgaacccgggaggcaggggttgcagtgagccaagactgcactactgcactccagcctgggggacagagcaagactccatc i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7189709 292 - 13098629 AGAAAGGTATAATAggccg-----------ggcac-----agtggctc-atgcctgtaatcccagcattttgggaggccgaggtgggcggatcac--------aaggtcaggagtttgagattagcctggccaacacggtga-aatcccgtctctactaaaaacacaaaaattagcacggcgtggtggcaggtgcctgtaataccagctactctggaggctgatgcaagagaatcacctgaacccgggaggcaggggttgcagtgagccaagactgcactactgcactccagcctggggaacagagcaagactccatc i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4149031 292 - 4483953 AGAAAGGTGTAATAggccg-----------ggcgc-----agtggctc-atgcctgtaatcccagcattctgggaggccgaggtgggcggatcac--------aaggtcaggagtttgagattagcctggccaacaaggtga-aaccccgtctctactaaaaacacaaaaattagccaggcgtggtggcaggtgcctgtaataccagctactctagaggctgatgcaggagaatcacctgaacccgggaggcaggggttgcagtgagccaagactgcactactgcactccagcctgggggacagagcaagactccatc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24779783 295 + 33263144 AGAAAGGTATAATAggccg-----------ggcgc--ggtggtggctc-atgcctgtaatcccagcattttgggaggccgaggtgggcggatcac--------aaggtcaggagtttgagattagcctggccaacacggtga-aaccccgtctctactaaaaacacaaaaattagccaggcgtggtggcaggtgcctgtaataccagctactcgggaggctgatgcaggagaatcacctgaacctgggaggcaggggttgcagtgagccaagactgcactactgcactccagcctgggggacagagcacgactccatc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14063217 292 - 14338769 AGAAAGGTATAATAggccg-----------ggcgc-----agtggctc-atgcctgtaatcccagcattttgggaggccgaggtgggcggatcac--------aaggtcaggagtttgagattagcctggccaacacggtga-aaccccgtctctactaaaaacacaaaaattagccaggcgtggtggcaggtgcctgtaataccagctactctggaggctgatgcaggagaatcacctgaacccgggaggcaggggttgcagtgagccaagactgtactactgcactccagcctgggggacagagcaagactccatc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1000191 292 + 1946073 AGAAAGGTATAATAggccg-----------ggcgc-----ggtggctc-atgcctgtaatcccagcattttgggaggccgaggcgggcggatcac--------gaggtcaggagtttgagaccagcctggccaacatggtga-aacccagtctctactaaaaacacaacaattagccaggcatggtggcaggtgcctgtaatcccagctactcgggaggctgatgcaggagaatcgcctgaacctgggaggcaggggttgcagtgagccaagactgcactactgcactctagcctgggggacagagcaagactccatc i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36362548 303 - 42659167 AGAAAGGTGTTTTAAAAAGTGAAGATTAAAGGTACCCAAGGATggctcggcgcctgtggctcaagt---------ggctaaggc--gccagccacatacacctaaggtggcgggtttgaatccagcccgtcccgccaaacaacaatgatggctgcaataaaaaaaaaaaaa-tagccaggtgttgtggcgggcgcctgtggtcccagctacttgggaggctgaggcaggagactcgcttaagcccaggagctggaggttgctgtgagctgtgat---gccacagaactctacccagggggacagcttgaggctctgtc i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 165890 28 + 1056298 I e canFam3.chr10 46165790 0 - 69331447 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C a score=4664.000000 s hg38.chr22_GL383582v2_alt 157211 1 + 162811 t s panTro5.chr22 28936759 1 + 37823149 t i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211429 1 + 50109623 t i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234493 1 + 4464012 t i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727944 1 - 115148730 t i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87692752 1 - 96509753 t i macFas5.chr10 C 0 I 3 s macNem1.NW_012012688v1 7190001 1 - 13098629 t i macNem1.NW_012012688v1 C 0 I 4 s cerAty1.NW_011999588v1 4149323 1 - 4483953 t i cerAty1.NW_011999588v1 C 0 I 16 s chlSab2.chr19 24780078 1 + 33263144 t i chlSab2.chr19 C 0 I 3 s manLeu1.NW_012102031v1 14063509 1 - 14338769 t i manLeu1.NW_012102031v1 C 0 I 16 s colAng1.NW_012115588v1 1000483 1 + 1946073 t i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36362851 1 - 42659167 c i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 165890 28 + 1056298 I e canFam3.chr10 46165790 0 - 69331447 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C e rheMac8.chr10 84346447 11 + 92844088 I a score=5453.000000 s hg38.chr22_GL383582v2_alt 157212 27 + 162811 caaaaaatta------aaaaaaaaaaaaaaagg s panTro5.chr22 28936760 27 + 37823149 caaaaaatta------aaaaaaaaaaaaaaagg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211430 26 + 50109623 caaaaaatt-------aaaaaaaaaaaaaaagg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234494 26 + 4464012 caaaaaata-------aaaaaaaataaaaaagg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727945 25 - 115148730 caaaaaat--------aaaaaaataaaaaagga i nomLeu3.chr7b C 0 C 0 s macFas5.chr10 87692756 7 - 96509753 ----------------gggggaa---------- i macFas5.chr10 I 3 C 0 s macNem1.NW_012012688v1 7190006 7 - 13098629 ----------------gggggaa---------- i macNem1.NW_012012688v1 I 4 C 0 s chlSab2.chr19 24780082 17 + 33263144 ----------------gggggaataaaaaaaag i chlSab2.chr19 I 3 I 5 s colAng1.NW_012115588v1 1000484 20 + 1946073 -------tgc------agggaaaaaaagaaaaa i colAng1.NW_012115588v1 C 0 I 5 s otoGar3.GL873526 36362852 23 - 42659167 ---------cccccccaaaaaaaaaaaaaaaa- i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 165890 28 + 1056298 I e canFam3.chr10 46165790 0 - 69331447 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C e manLeu1.NW_012102031v1 14063510 16 - 14338769 I e cerAty1.NW_011999588v1 4149324 16 - 4483953 I e rheMac8.chr10 84346447 11 + 92844088 I a score=12905.000000 s hg38.chr22_GL383582v2_alt 157239 5 + 162811 aaaaa s panTro5.chr22 28936787 5 + 37823149 aaaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211456 5 + 50109623 aaaaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234520 5 + 4464012 aaaaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727970 5 - 115148730 aaaaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84346458 5 + 92844088 aaaaa i rheMac8.chr10 I 11 C 0 s macFas5.chr10 87692763 5 - 96509753 aaaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7190013 5 - 13098629 aaaaa i macNem1.NW_012012688v1 C 0 C 0 s chlSab2.chr19 24780104 2 + 33263144 ---aa i chlSab2.chr19 I 5 C 0 s colAng1.NW_012115588v1 1000509 1 + 1946073 ----A i colAng1.NW_012115588v1 I 5 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 165890 28 + 1056298 I e canFam3.chr10 46165790 0 - 69331447 C e otoGar3.GL873526 36362875 0 - 42659167 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C e manLeu1.NW_012102031v1 14063510 16 - 14338769 I e cerAty1.NW_011999588v1 4149324 16 - 4483953 I a score=5005.000000 s hg38.chr22_GL383582v2_alt 157244 1 + 162811 a s panTro5.chr22 28936792 1 + 37823149 a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211461 1 + 50109623 a i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234525 1 + 4464012 A i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727975 1 - 115148730 a i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84346463 1 + 92844088 a i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87692768 1 - 96509753 a i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7190018 1 - 13098629 a i macNem1.NW_012012688v1 C 0 C 0 s chlSab2.chr19 24780106 1 + 33263144 a i chlSab2.chr19 C 0 C 0 s colAng1.NW_012115588v1 1000510 1 + 1946073 A i colAng1.NW_012115588v1 C 0 C 0 s canFam3.chr10 46165790 1 - 69331447 A i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 165890 28 + 1056298 I e otoGar3.GL873526 36362875 0 - 42659167 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C e manLeu1.NW_012102031v1 14063510 16 - 14338769 I e cerAty1.NW_011999588v1 4149324 16 - 4483953 I a score=55835.000000 s hg38.chr22_GL383582v2_alt 157245 10 + 162811 GAAAGGTATA s panTro5.chr22 28936793 10 + 37823149 GAAAGGTATA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211462 10 + 50109623 GAAAGGTATA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234526 10 + 4464012 GAAAGGTATA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727976 10 - 115148730 GAAAGGTATA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84346464 10 + 92844088 gaaagggata i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87692769 10 - 96509753 gaaagggata i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7190019 10 - 13098629 gaaaGGGATA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4149340 10 - 4483953 gaaaGGGATA i cerAty1.NW_011999588v1 I 16 C 0 s chlSab2.chr19 24780107 10 + 33263144 gaaAGGGATA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14063526 10 - 14338769 gaaagggata i manLeu1.NW_012102031v1 I 16 C 0 s colAng1.NW_012115588v1 1000511 6 + 1946073 ----GGGATA i colAng1.NW_012115588v1 C 0 C 0 s canFam3.chr10 46165791 10 - 69331447 GAAGAGTATA i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 165890 28 + 1056298 I e otoGar3.GL873526 36362875 0 - 42659167 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C a score=651407.000000 s hg38.chr22_GL383582v2_alt 157255 109 + 162811 ATAAAAAGCAAAAAG-------CAAAGATTAACGGTGCAC-CAGAAAATTACAAAC-GT-CATGAAGGAAACATCCAGTTAAGGGAATGTT-----AGATTTCATGGAGAAAAGTAACATTTGA s panTro5.chr22 28936803 102 + 37823149 AT-------AAAAAG-------CAAAGATTAAAGGTGCAC-CAGAAAATTACAAAC-GT-CATGAAGGAAACATCCAGTTAAGGGAATGTT-----AGATTTCATGGAGAAAAGTAACACTTGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211472 109 + 50109623 ATAAAAAGCAAAAAG-------CAAAGATTAAAGGTGCAC-CAGAAAATTACAAAC-GT-CATGAAGGAAACATCCAGTTAAGGGAATGTT-----AGATTTCGTGGAGAAAAGTAACACTTGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234536 116 + 4464012 ATAAAAAGCAAAAAGCAAAAATCAAAGATTAAAGGTGCAC-CAGAAAATTACAAAC-AT-CATGAGGGAAACATCCAGTTAAGGGAATGTT-----AGATTTCATGGAGAAAAGTAACATTTGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106727986 109 - 115148730 ATAAAAAGCAAAAAA-------CAAAGATTAAAGGTGCAC-CAGAAAATTACAAAC-GT-CATGAAGGAAACATCCAGTTAAGGGAATGTT-----AAATTTCATGGAGAAAAGTAACATTTGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84346474 101 + 92844088 at-------aaaaag-------caaaGATTAAAGGTGCAC-CAGACAATTACAAAC-GT-CATGAAGGAAACATCCAGTTAAGGGAATGTT-----AGATTTCATGGAGGAAAAAAA-ATTTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87692779 101 - 96509753 at-------aaaaag-------caaaGATTAAAGGTGCAC-CAGACAATTACAAAC-GT-CATGAAGGAAACATCCAGTTAAGGGAATGTT-----AGATTTCATGGAGGAAAAAAA-ATTTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7190029 101 - 13098629 AT-------AAAAAG-------CAAAGATTAAAGGTGCAC-CAGACAATTACAAAC-GT-CATGAAGGAAACATCCAGTTAAGGGAATGTT-----AGATTTCATGGAGGAAAAAAA-ATTTGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4149350 101 - 4483953 AT-------AAAAAG-------CAAAGATTAAAGGTGCAC-CAGACAATTACAAAC-GT-CATGAAGGAAACATCCAGTTAAGGGAATGTT-----AGATTTCATGGAGGAAAAAAA-ATTTGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24780117 101 + 33263144 AT-------AAAAAG-------CAAAGATTAAAGGTGCAC-CAGACAATTACAAAC-GT-CATGAAGGAAACATCCAGTTAAGGGAATGTT-----AGATTTCATGGAGGAAAAAAA-ATTTGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14063536 101 - 14338769 at-------aaaaag-------caaaGATTAAAGGTGCAC-CAGACAATTACAAAC-GT-CATGAAGGAAACATCCAGTTAAGGGAATGTT-----AGATTTCATGGAGGAAAAAAA-ATTTGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1000517 102 + 1946073 AT-------AAAAAG-------CAAAGATTAAAGGTGCAC-CAGACAATTACAAAC-GT-CATGAAGGAAACATCCAGTTAAGGGAATGTT-----AGATTTCATGGAGGAAAAAAACATTTGA i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36362875 75 - 42659167 ----------------------------------GTACCC-AAGGATATTACAAACTGT-CACAAAATAAATA-CCAATTAATGGAATG----------TTTCATGAAGAAAG--AGCATTTAA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46165801 103 - 69331447 AT-------AAAAAG-------CAAAGATTAAATGTACACATAGAAAATTACAAAA-TTCCATGAGAGAAACACCCAGTTATGGGGATGTT-----AGGTTTCATGGAAGAAGGAGC-ATTTGA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 165918 109 + 1056298 --ATACAAAACAAAA-------TGAAGATTAAATGTAAAC-AAGAAAATTACAAAATGC-CATAAAACACCCACTTAAGTAAGAAAATGTTAGGCAAGGTTTCATAGAAGGAGC----ACTTGA i dasNov3.JH570235 I 28 I 1 e aotNan1.NW_018512389v1 54140 0 - 704494 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C a score=219500.000000 s hg38.chr22_GL383582v2_alt 157364 32 + 162811 GAAAGGCCTTGAAATATAACTATCTCAAAAGA s panTro5.chr22 28936905 32 + 37823149 GAAAGGCCTTGAAATATAACTATCTCAAAAGA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211581 32 + 50109623 GAAAGGCCTTGAAATATAACTATCTCAAAAGA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234652 32 + 4464012 GAAAGGCCTTGAAATATAACTATCTCAAAAGA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728095 32 - 115148730 GAAAGGCCTTGAAATATAAGTATCTCAAAAGA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84346575 32 + 92844088 GAAAGGCCTTGAAATATAATTGTCTCAAAAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87692880 32 - 96509753 GAAAGGCCTTGAAATATAATTGTCTCAAAAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7190130 32 - 13098629 GAAAGGCCTTGAAATATAATTGTCTCAAAAGA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4149451 32 - 4483953 GAAAGGCCTTGAAATATAATTGTCTCAAAAGA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24780218 32 + 33263144 GAAAGGCCTTGAAATATAATTGTCTCAAAAGA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14063637 32 - 14338769 GAAAGGCCTTGAAATATAATTGTCTCAAAAGA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1000619 32 + 1946073 GAAAGGCCTTGAAATATAATTGTCTCAAAAGA i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36362950 31 - 42659167 GAAAAG-CTTCAAAGATAATGATCTCAAAAGA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46165904 32 - 69331447 GAAATGCCTTGAAAGACTGAGATCTCCACATA i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 166027 1 + 1056298 I e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C a score=59037.000000 s hg38.chr22_GL383582v2_alt 157396 12 + 162811 TGGAGAACAggc s panTro5.chr22 28936937 12 + 37823149 TGGAGAACAGGC i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211613 12 + 50109623 TGGAGAACAggc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234684 12 + 4464012 TGGAGAACAggc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728127 12 - 115148730 TGGAGAACAggc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84346607 12 + 92844088 TGGAGAACTggc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87692912 12 - 96509753 TGGAGAACTggc i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4149483 12 - 4483953 TGGAGAATAATc i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24780250 12 + 33263144 TGGAGAACAggc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14063669 9 - 14338769 TGGAGAATA--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1000651 12 + 1946073 TGGAGAACAggc i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36362981 9 - 42659167 TGGAGAAAA--- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46165936 12 - 69331447 TGGAGAACAGGC i canFam3.chr10 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 166027 1 + 1056298 I e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C e macNem1.NW_012012688v1 7190162 0 - 13098629 C a score=20831.000000 s hg38.chr22_GL383582v2_alt 157408 12 + 162811 tgcacgcggtgg s panTro5.chr22 28936949 12 + 37823149 TGCAAgcggtgg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211625 12 + 50109623 tgcacgcggtgg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234696 12 + 4464012 tgcacgcggtgg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728139 12 - 115148730 tgcacgcggtgg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84346619 12 + 92844088 cgggcgcggtgg i rheMac8.chr10 C 0 I 305 s macFas5.chr10 87692924 12 - 96509753 cgggcgcggtgg i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4149495 1 - 4483953 t----------- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24780262 12 + 33263144 tgcatgcggtgg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14063678 2 - 14338769 ----------AT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1000663 12 + 1946073 tgcatgcagtgg i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 166027 1 + 1056298 I e canFam3.chr10 46165948 0 - 69331447 C e otoGar3.GL873526 36362990 0 - 42659167 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C e macNem1.NW_012012688v1 7190162 0 - 13098629 C a score=338906.000000 s hg38.chr22_GL383582v2_alt 157420 76 + 162811 ctcatacctgtgatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttagagaccagcct s panTro5.chr22 28936961 76 + 37823149 ctcatgcctgtgatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttagagaccagcct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211637 76 + 50109623 ctcatgcctgtgatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttagagaccagcct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234708 76 + 4464012 ctcatgactgtgatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttagagaccagcct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728151 76 - 115148730 ctcatgcctgtgatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttagagaccagcct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84346936 76 + 92844088 ctcatgcctgtgatcccagtactttgggaggccaaggtgggtggatcacctgaggtcaggagttagagacaagcct i rheMac8.chr10 I 305 C 0 s macFas5.chr10 87692936 74 - 96509753 ctcaagcctgtaatcccagcactttgggaggccgagatgggcggatcac--aaggtcaggagatcgagaccatcct i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4149496 74 - 4483953 --catgcctgtgatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttagagacaagcct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24780274 76 + 33263144 ctcatgcctgtgatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttagagacaagcct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14063680 76 - 14338769 ctcatgcctgtgatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttagagacaagcct i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1000675 76 + 1946073 ctcatgcctgtgatcccagcactttgggaggccaaggtaggtggatcacctgaggtgaggagttagagacaagcct i colAng1.NW_012115588v1 C 0 C 0 s otoGar3.GL873526 36362990 19 - 42659167 ---------------------------------GAAACAG------------------------AGAGCACAGCCC i otoGar3.GL873526 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 166027 1 + 1056298 I e canFam3.chr10 46165948 0 - 69331447 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C e macNem1.NW_012012688v1 7190162 0 - 13098629 C a score=144666.000000 s hg38.chr22_GL383582v2_alt 157496 32 + 162811 ggtcaacatggtgaaatcccatctctactaa-a s panTro5.chr22 28937037 32 + 37823149 ggtcaacatggtgaaatcccatctctattaa-a i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211713 32 + 50109623 ggtcaacatggtgaaatcccaactctattaa-a i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234784 32 + 4464012 ggtcaacatggtgaaatcccatctctactaa-a i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728227 32 - 115148730 gatcaacatggtgaaaccccatctctactaa-a i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84347012 32 + 92844088 ggccaacatggtgaaaccccatctctactaa-a i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87693010 33 - 96509753 ggctaacacggtgaaactccgtctctactaaga i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4149570 32 - 4483953 ggccaacatggtgaaaccccatctctactaa-a i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24780350 32 + 33263144 ggccaacatggtgaaaccccatctctactaa-a i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14063756 32 - 14338769 ggccaacatggtgaaaccccatctctactaa-a i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1000751 32 + 1946073 ggccaacatggtgaaaccccatctctactaa-a i colAng1.NW_012115588v1 C 0 C 0 e aotNan1.NW_018512389v1 54140 0 - 704494 C e dasNov3.JH570235 166027 1 + 1056298 I e canFam3.chr10 46165948 0 - 69331447 C e otoGar3.GL873526 36363009 0 - 42659167 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936541 0 - 16357246 C e calJac3.chrUn_GL286373 2028826 0 - 2117846 C e macNem1.NW_012012688v1 7190162 0 - 13098629 C a score=115757.000000 s hg38.chr22_GL383582v2_alt 157528 16 + 162811 aatataagaatttgct s panTro5.chr22 28937069 16 + 37823149 aatataagaatttgct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211745 16 + 50109623 aatataagaatttgct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234816 16 + 4464012 aatataagaatttgct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728259 16 - 115148730 aatgtaagaatttgct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84347044 16 + 92844088 aatacaagaatttgct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87693043 16 - 96509753 aatacaaaaaatagcc i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4149602 16 - 4483953 aatacaagaatttgct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24780382 16 + 33263144 aatacaagaatttgct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14063788 16 - 14338769 aatacaagaatttgct i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1000783 16 + 1946073 aatacaagaatttgct i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028826 16 - 2117846 aatacaaaaatttgct i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8936541 16 - 16357246 aatacaaaaatttgct i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512389v1 54140 16 - 704494 aatacaaaaatttgct i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 166027 1 + 1056298 I e canFam3.chr10 46165948 0 - 69331447 C e otoGar3.GL873526 36363009 0 - 42659167 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e macNem1.NW_012012688v1 7190162 0 - 13098629 C a score=807107.000000 s hg38.chr22_GL383582v2_alt 157544 107 + 162811 tggcgtggtggcaggcgcctgtaatcccagctactcaggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgcagtgagcc-----gagatggtgccactg s panTro5.chr22 28937085 107 + 37823149 tggcgtggtggcaggcgcctgtaatcccagctactcaggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgcagtgagcc-----gagatggtgccactg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211761 107 + 50109623 tggcgtggtggcgggcgcctgtaatcccagctactcaggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgcagtgagcc-----gagatggtgccactg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234832 107 + 4464012 tggcgtggtggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgcagtgagcc-----gagatggtgccactg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728275 107 - 115148730 tggcgtggtggcgggcgcctgtaatcccagctactcaggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgcagtgagcc-----gagatggtgccactg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84347060 112 + 92844088 tggtgtggtggcgggtgcctgtaaccccagctactcgggaggctgagacaggagaatggcatgaacccgggaggcagagcttgcagtgagccgagtggagattgtgccactg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87693059 106 - 96509753 gggcgaggtggc-agcgcctgtagtcccagctactcgggaggctgaggctggagaatggcgtgaacccgggaggcggagcttgcagtgagct-----gagatccggccactg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7190162 112 - 13098629 Tggtgtggtggcgggtgcctgtaaccccagctactcgggaggctgagacaggagaatggcatgaacccgggaggcagagcttgcagtgagccgagtggagattgtgccactg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4149618 112 - 4483953 tggtgtggtggcgggtacctgtaaccccagctacttgggaggctgagacaggagaatggcatgaacctgggaggcagagcttgcagtgagccgagtggagattgtgccactg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24780398 112 + 33263144 tggtgtggtggcgggtgcctgtaaccccagctactcgggaggctgagacaggagaatggcatgaacccgggaggcagagcttgcagtgagccgagtggagattgtgccactg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14063804 82 - 14338769 tggtgtggtggcgggtgcctataaccccagctactcgggaggctgagacaggagaatggcatgaacccgggaggcagagctt------------------------------ i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1000799 112 + 1946073 tggtgtggtggcgggtgcctgtaaccccagctactcaggaggctgagacaggagaatggcatgaacccgggaggcagagcttgcggagagccgagtggagattgtgccactg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028842 107 - 2117846 tggtctggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggtgaaggtttcggtgagcc-----gtgattgcaccaatc i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8936557 106 - 16357246 tggtctgttgtcacacgcctgtaatcccagctactc-ggaggctgaggcaggagaattgcctgaacccaggaggtggaggttttggtgagcc-----gtgatcgtgccatcg i saiBol1.JH378157 C 0 C 0 s aotNan1.NW_018512389v1 54156 107 - 704494 tggtctggtggcacgcgcctgtaatcccagctactcgggaggctgaggcagaagaattgcttgaacccaggaggtggagattttggtgagcc-----gtgatcgcgccatcg i aotNan1.NW_018512389v1 C 0 C 0 e dasNov3.JH570235 166027 1 + 1056298 I e canFam3.chr10 46165948 0 - 69331447 C e otoGar3.GL873526 36363009 0 - 42659167 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I a score=191146.000000 s hg38.chr22_GL383582v2_alt 157651 37 + 162811 cactccagcctgggtgata-----------------gagcgagactccatctc--a s panTro5.chr22 28937192 39 + 37823149 ccctccagcctgggtgata-----------------gagcgagactccatctcaaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211868 36 + 50109623 cactccagcctgggtgata-----------------gagcgagactccatctc--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234939 36 + 4464012 cactccagcctgggtgaca-----------------gagcgagactccatctc--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728382 36 - 115148730 cactccagcctgggtgaca-----------------gagcgagactccatctc--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84347172 36 + 92844088 cacgccagcctgggcaaca-----------------gagcgagactccatctc--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87693165 36 - 96509753 cactccagcctgggctaca-----------------gagcgagactccgtctc--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7190274 36 - 13098629 cacgccagcctgggcaaca-----------------gagcgagactccatctc--- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4149730 36 - 4483953 cactccagcctgggcaaca-----------------gagcgagactccacctc--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24780510 36 + 33263144 cactccagcctgggaaaca-----------------gagcgagactccaactc--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14063886 28 - 14338769 --------cctgggcaaca-----------------gagcgagactccacctc--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1000911 36 + 1946073 cactccagcctgggcaaca-----------------gagcgagactccatctc--- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028949 27 - 2117846 cactccagcctaggaaacg------------------agcaaaac----------- i calJac3.chrUn_GL286373 C 0 I 2 s saiBol1.JH378157 8936663 45 - 16357246 cactccagcctaggaagagcaaaaaaaaaaaatgaatagcaaaac----------- i saiBol1.JH378157 C 0 I 10 s aotNan1.NW_018512389v1 54263 37 - 704494 cactccagcctaggataca----------------agagcaaaactccacctc--- i aotNan1.NW_018512389v1 C 0 I 6 s otoGar3.GL873526 36363009 8 - 42659167 CACTCCTG------------------------------------------------ i otoGar3.GL873526 C 0 C 0 e dasNov3.JH570235 166027 1 + 1056298 I e canFam3.chr10 46165948 0 - 69331447 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I a score=2001.000000 s hg38.chr22_GL383582v2_alt 157688 5 + 162811 aaaaa s panTro5.chr22 28937231 5 + 37823149 aaaaa i panTro5.chr22 C 0 C 0 s nomLeu3.chr7b 106728418 4 - 115148730 -aaaa i nomLeu3.chr7b C 0 C 0 s dasNov3.JH570235 166028 5 + 1056298 AAAGA i dasNov3.JH570235 I 1 C 0 e aotNan1.NW_018512389v1 54300 6 - 704494 I e canFam3.chr10 46165948 0 - 69331447 C e otoGar3.GL873526 36363017 0 - 42659167 C e cebCap1.NW_016107750v1 1422951 184 - 1807191 I e saiBol1.JH378157 8936708 10 - 16357246 I e calJac3.chrUn_GL286373 2028976 2 - 2117846 I e colAng1.NW_012115588v1 1000947 0 + 1946073 C e manLeu1.NW_012102031v1 14063914 0 - 14338769 C e chlSab2.chr19 24780546 0 + 33263144 C e cerAty1.NW_011999588v1 4149766 0 - 4483953 C e macNem1.NW_012012688v1 7190310 0 - 13098629 C e macFas5.chr10 87693201 0 - 96509753 C e rheMac8.chr10 84347208 0 + 92844088 C e gorGor5.CYUI01015375v1 3234975 0 + 4464012 C e panPan2.chr22 41211904 0 + 50109623 C a score=84758.000000 s hg38.chr22_GL383582v2_alt 157693 17 + 162811 ----aaaaaaaaaa----aaGATAA s panTro5.chr22 28937236 17 + 37823149 ----aaaaaaaaaa----aaGATAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211904 17 + 50109623 ----aaaaaaaaaa----aaGATAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234975 14 + 4464012 -------aaaaaaa----aagataa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728422 17 - 115148730 ----aaaataaaca----aaaaTAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84347208 16 + 92844088 -----aaaaaaaaa----aaaaaaa i rheMac8.chr10 C 0 I 10 s macFas5.chr10 87693201 16 - 96509753 -----aaaaaaaaa----aaaaaaa i macFas5.chr10 C 0 I 465 s macNem1.NW_012012688v1 7190310 16 - 13098629 -----aaaaaaaaa----aaaaaaa i macNem1.NW_012012688v1 C 0 I 1 s cerAty1.NW_011999588v1 4149766 16 - 4483953 -----aaaaaaaaa----aaaaaaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24780546 16 + 33263144 -----aaaaaaaaa----aaaaaaa i chlSab2.chr19 C 0 I 12 s manLeu1.NW_012102031v1 14063914 16 - 14338769 -----aaaaaaaaa----aaaaaaa i manLeu1.NW_012102031v1 C 0 I 2 s colAng1.NW_012115588v1 1000947 16 + 1946073 -----aaaaagaaa----aaaaaaa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028978 16 - 2117846 -----cacctcaaa----aaaaaaa i calJac3.chrUn_GL286373 I 2 I 1 s saiBol1.JH378157 8936718 16 - 16357246 -----aaaaaaaaa----aaaaaaa i saiBol1.JH378157 I 10 I 1 s cebCap1.NW_016107750v1 1423135 16 - 1807191 -----AAAAAAAAA----AAAAAGA i cebCap1.NW_016107750v1 I 184 I 1 s aotNan1.NW_018512389v1 54306 11 - 704494 ----------aaaa----aaaaaaa i aotNan1.NW_018512389v1 I 6 I 1 s dasNov3.JH570235 166033 22 + 1056298 ATCTGAAGAAGAGATTTCAAAA--- i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46165948 0 - 69331447 C e otoGar3.GL873526 36363017 0 - 42659167 C a score=153005.000000 s hg38.chr22_GL383582v2_alt 157710 14 + 162811 GATGGAGAACAGAA- s panTro5.chr22 28937253 14 + 37823149 GATGGAGAACAGAA- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211921 14 + 50109623 GATGGAGAACAGAA- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3234989 14 + 4464012 gatggagaacagaa- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728439 14 - 115148730 GATGGAGAACAGAA- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84347234 14 + 92844088 GATGGAGAACAGAA- i rheMac8.chr10 I 10 C 0 s macFas5.chr10 87693682 14 - 96509753 GATGGAGAACAGAA- i macFas5.chr10 I 465 C 0 s macNem1.NW_012012688v1 7190327 14 - 13098629 GATGGAGAACAGAA- i macNem1.NW_012012688v1 I 1 C 0 s cerAty1.NW_011999588v1 4149782 14 - 4483953 GATGGAGAGCAGAA- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24780574 14 + 33263144 gaTGGAGAACAGAA- i chlSab2.chr19 I 12 C 0 s manLeu1.NW_012102031v1 14063932 14 - 14338769 gaTGGAGAACAGAA- i manLeu1.NW_012102031v1 I 2 C 0 s colAng1.NW_012115588v1 1000963 14 + 1946073 gaTGGAGAACAGAA- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2028995 14 - 2117846 GATGGAGAACAGAA- i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8936735 14 - 16357246 GATGGCGAACAGAA- i saiBol1.JH378157 I 1 C 0 s cebCap1.NW_016107750v1 1423152 14 - 1807191 GATGGAGAACAGAA- i cebCap1.NW_016107750v1 I 1 C 0 s aotNan1.NW_018512389v1 54318 14 - 704494 CATGGAGAATAGAA- i aotNan1.NW_018512389v1 I 1 C 0 s dasNov3.JH570235 166055 15 + 1056298 GATGGAGAATGAGGA i dasNov3.JH570235 C 0 C 0 e canFam3.chr10 46165948 0 - 69331447 C e otoGar3.GL873526 36363017 0 - 42659167 C a score=1529915.000000 s hg38.chr22_GL383582v2_alt 157724 141 + 162811 AAGAGGACACGGACCCAGACCTGGAAATAAAGGCACCTCTGGGGACAC-CGAGCTGCAGCAGAGGATAC-----AACTGGGGAAACCAGGAGATGTGGTTAGAGAGGCAGGGCAGGGTCCTACCATGGAACCCTGAAGACCAAGGCA s panTro5.chr22 28937267 140 + 37823149 AAGA-GACACGGACCCAGACCTGGAAATAGAGGCACCTCTGGGGACAC-CGAGCTGCAGCAGAGGATAC-----AACTGGGGAAACCAGGAGATGTGGTTAGAGAGGCAGGGCAGGGTCCTACCATGGAACCCTGAAGACCAAGGCA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41211935 141 + 50109623 AAGAGGACACGGACCCAGACCTGGAAATAGAGGCACCTCTGGGGACAC-CGAGCTGCAGCAGAGGATAC-----AACTGGGGAAACCAGGAGATGTGGTTAGACAGGCAGGGCAGGGTCCTACCATGGAACCCTGAAGACCAAGGCA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3235003 141 + 4464012 aaGAGGACACGGACCCAGACCTGGAAATAGAGGTACCTCTGGGGACAC-CGAgctgcagcagaggatac-----aactggggaaaccaggagatgtggttagagaggcagggccgggtcctaccatggaaccctgaagaccaaggca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728453 141 - 115148730 AAGAGGACACGGACCCAGACCTGGAAATAGAGGCACCTCTGGGGACAC-CGAGCTGCAGCAGAGGATAC-----GAGTGGGGAAACCAGGAGATGGGGCTGGAGAGGCAGGGCAGGGTCCTACCATGGAACCCTGAAGACCAAGGCA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84347248 142 + 92844088 AAGAGGACACAGACCCAGACCTGGAAATAGAGGCACCTCT-GGGACAC-CAAGCTGCAGCAGAGAATAC---AAAAGTGGGGAAACCAGGAGATGGAGCTGAAGAGGCAGGGCAGGGTCCTACCGTGGAACCCTGAAGACCAAGGTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87693696 142 - 96509753 AAGAGGACACAGACCCAGACCTGGAAATAGAGGCACCTCT-GGGACAC-CAAGCTGCAGCAGAGAATAC---AAAAGTGGGGAAACCAGGAGATGGAGCTGAAGAGGCAGGGCAGGGTCCTACCGTGGAACCCTGAAGACCAAGGTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7190341 140 - 13098629 AAGAGGACACAGACCCAGACCTGGAAATAGAGGCACCTCT-GGGACAC-CAAGCTGCAGCAGAGAATAC-----AAGTGGGGAAACCAGGAGATGGAGCTGAAGAGGCAGGGCAGGGTCCTACCGTGGAACCCTGAAGACCAAGGTA i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4149796 140 - 4483953 AAGAGGACACAGACCCAGACCTGGAAACAGAGGCACCTCT-GGGACAC-CAAGCTGCAGCAGAGAATAC-----AAGTGGGGAAACCAGGAGATGGGGCTGGAGAGGCAGGGCAGGGTCCTACCGTGGAACCCTGAAGACCAAGCTA i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24780588 140 + 33263144 AAGAGGACACAGACCCAGACCTGAAAATAGAGGCACCTCT-GGGACAC-GAAGCTGCAGCAGAGAATAC-----AAGTGGGGAAACCAGGAGATGGGGCTGGAGAGGCAGGGCAGGGTCCTACCGTGGAACCCTGAAGACCAAGGTA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14063946 140 - 14338769 AAGAGGACCCAGACCCAGACCTGGAAATAGAGGCACCTCT-GGGACAC-CAAGCTGCAGCAGAGAATAC-----AAGTGGGGAAACCAGGAGATGGGGCTGGAGAGGCAGGGCAGGGTCCTACCGTGGAACCCTGAAGACCAAGCTA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1000977 140 + 1946073 AAGAGGACATACACCCAGACCTGGAAATAGAGGCACCTCT-GGGACAC-CAAGTTGCAGCAGAGAATAC-----AAGTGGGGAAACCAGGAGATGGGGCTGGAGAGGCAGGGAAGGGTCCTATCGTGGAACCCTGAAGACCAAGGCA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2029009 127 - 2117846 TAGAGAACA------------TGGAAAGAGAGATGCCTCT--GGGCAC-AGAGCTACAGTAGAAGATAC-----AAGTGGGTAAACTTGGAGATAGGGCTGGAGAGGCAGGGCAGGGTCCTACCGTGGAACCCTGAATACCAAGGCA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8936749 139 - 16357246 TAGAGGACATGGACCCAGGACTGGAAAGAGAGACACCTCT--GGGCAC-AGAGCTGCAGTAGAGGATAC-----AAGTGGGTGAACTTGGAGATAGGGCTGGAGAGGCAGGGCAGGGTCCTACGGTGGAACCCTGAATACCAAGGCA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1423166 139 - 1807191 TACAGGACATAGCCCCAGGCCTGGAAAAAGAGACACCTCT--GGGCAC-AGAGCTGCAGTAGAGGATAC-----AAGTGGGTAAACTTGGAGATAGGGCTGGAGAAGCAGGGCAGGGTCCTACCATGGAACCCTGAATACCAAGGCA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 54332 139 - 704494 TAGAGGACATGGACCCAGGCCTGGAAAGAGAGACGCCTCT--GGGCAC-AGAgctgcagtagaggatac-----aagtgggtaaacttggagatagggctggaaaggcagggcagggtcctaccgtggaACCCTGAATACCAAGGCA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36363017 117 - 42659167 ------------------------GAACTGAGACCTCTCTGGGGACAC-AGCTCTGCAGTGGAGGATAT-----GTGTGGGGAAACTGGGAGATGGGGCTGGAAAGGCAGGACAAGGTCCTGCTGTGGAACCCTGAATACCAAGGCA i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46165948 129 - 69331447 -AGAGGGCACGGTCACAGGCATGGGA------------CTGGGGACACAAAAGCCACAGGAGCGCACAC-----ATGCAGGGAAGCTGGGAGATGGGCCTGGAAAGGCAGGGGAGTGTCCTACTGTGGAACCCTGAACAACAAGGCA i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 166070 133 + 1056298 AAGAGAAAATGGATACATGCATGCAAGTG------------AGGACAC--AAGCTGAAATAGGTGATACATGACATGTAAGGAAACTGAGAGATAGGGCTGGAAAGAAAGGACACTTTCCTATGGTGGAATCCTGAACACGAGGGCA i dasNov3.JH570235 C 0 I 395 a score=3353855.000000 s hg38.chr22_GL383582v2_alt 157865 291 + 162811 AGG-TGTCTAAATTTAACTCAGTACACAAATGAAAAGGATACGACAAGAGCTACCTTTCAGAAGATTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAAGGTTACT--ATTCACGAA---GC--TACAA----GAGCTCAGGCAGGTCCAGCACCATGCTCATTTAAACCACTACCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTT-CCTCCGCATCTCTTCAAGACACCTCTCTTCAATTTCCTCACTTAAAATCACTAACTAGAAAGAAAA--- s panTro5.chr22 28937407 291 + 37823149 AGG-TGTCTAAATTTAACTCAGTACACATATGAAAAGGATACAACAAGAGCTACCTTTCAGAAGATTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAAGGTTACT--ATTCACGAA---GC--TACAA----GAGCTCAGGCAGGTCCAGCACCATGCTCATTCAAACCACTACCAATCTCTACT-TCCACA--AGCCCTGACCTGTCTCCTACTTGACTGGTT-CCTCCGCATCTCTTCAAGACACCTCTCTTCAATTTCCTCACTTAAAATCACTAACTAGAAAGGAAA--- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41212076 291 + 50109623 ACG-TGTCTAAATTTAACTCAGTACACAAATGAAAAGGATACAACAAGAGCTACCTTTCAGAAGATTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAAGGTTACT--ATTCACGAA---GC--TACAA----GAGCTCAGGCAGGTCCAGCACCATGCTCATTCAAACCACTACCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTT-CCTCTGCGTCTCTTCAAGACACCTCTCTTCAATTTCCTCACTTAAAATCACTAACTAGAAAGAAAA--- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3235144 293 + 4464012 agg-tgtctaaatttaactcagtacacaaatgaaaagGATACGACAAGAGCTACCTTTCAGAAGATTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAGGGTTACGTAATTCACGAA---GC--TACAA----GAGCTCAGGCAGGTCCAGCACCATGCTCATTCAAACCACTGCCAATCTCTACT-TCCACA--AGCTTTGACCCGTCTCCTACTTGACTGGTT-CCTCTGCATCTCTTCAAGACACCTCTCTTCAATTTCCTCACTTAAAATCACTAACTAGAAAGAAAA--- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728594 288 - 115148730 AGG-TGTCTAAATTTAACTCAGTACACAAATGAAAAGGATACGACAAGAGCTACCTTTC---AGATTTTCTGGCAGTAGTTGCAAAGACACGAGACCAGGGACTGGGGAAGAAGGGTTACT--ATTCATGAA---GC--TACAA----GAGCTCAGGCAGGTCCAGCACCATGCTCATTCAAACCACTGCCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTT-CCTCCGCATCTCTTCAAGACACCTCTCTTCAATTTCCTCACTTAAAATCGCTAACTAGAAAGAAAA--- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84347390 291 + 92844088 AGG-TGTCTAAATTTAATTCAGTCCATA-ATGAAAAGGATATGACAAGAGCTACCTTTCAGAAGACTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAGGGTTACT--ATTCACGAA---GC--TACAA----GAGCTCAGGCAGGTCCAGCACTATGCTCATTCAAACCACTGCCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTTCCCTCCACATCTCTTCAAGACACCTCTCTTCAATTCCCTCACTTAAAATCGCTGACTAGAAAGGACA--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87693838 291 - 96509753 AGG-TGTCTAAATTTAATTCAGTCCATA-ATGAAAAGGATATGACAAGAGCTACCTTTCAGAAGACTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAGGGTTACT--ATTCACGAA---GC--TACAA----GAGCTCAGGCAGGTCCAGCACTATGCTCATTCAAACCACTGCCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTTCCCTCCACATCTCTTCAAGACACCTCTCTTCAATTCCCTCACTTAAAATCGCTGACTAGAAAGGACA--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7190481 291 - 13098629 AGG-TGTCTAAATTTAATTCAGTACACA-ATGAAAAGGATATGACAAGAGCTACCTTTCAGAAGACTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAGGGTTACT--ATTCACGAA---GC--TACAA----GAGCTCAGGCAGGTCCAGCACTATGCTCATTCAAACCACTGCCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTTCCCTCCACATCTCTTCAAGACACCTCTCTTCAATTCCCTCACTTAAAATCGCTGACTAGAAAGGACA--- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4149936 291 - 4483953 AGG-TGTCTAAATTTAATTCAGTACACA-ATGAAAAGGATATGACAAGAGCTACCTTTCAGAAGACTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAGGGTTACT--ATTCACGAA---GC--TACAA----GAGCTCAGGCAGGTCCAGCACTATGCTCATTCAAACCACGGCCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTTCCCTCTACATCTCTTCAAGACACCTCTCTTCAATTCCCTCACTTAAAATCGCTGACTAGAAAGGACA--- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24780728 290 + 33263144 AGG-TGTCTAAATTTAATTCAGTACACA-AAGAAAAGGATATGACAAGAGCTACCTTTCAGAAGACTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAGGGTTACT--ATTCACGAA---GC--TACAA----GAGCTCAGGCACGTCCAGCACTATGCTCATTCAAACCACTGCCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTT-CCTCCACATCTCTTCAAGACACCTCTCTTCAATTCCCTCACTTAAAATCGCTGACTAGAAAGGACA--- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14064086 291 - 14338769 AGG-TGTCTAAATTTAATTCAGTACACA-ATGAAAAGGATATGACAAGAGCTACCTTTCAGAAGACTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAGGGTTACT--ATTCACGAA---GC--TACAA----GAGTTCAGGCAGGTCCAGCACTATGCTCATTCAAACCACTGCCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTTCCCTCTACATCTCTTCAAGACACCTCTCTTCAATTCCCTCACTTAAAATCACTGACTAGAAAGGACA--- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1001117 290 + 1946073 AGG-TGTCTAAATTTAATTCAGTACACA-ATGAAAAGGATATGACAAGAGCTACCTTTCAGAAGACTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTAGGGAAAAAGGGTTACT--ATCCACGAA---GC--TACAA----GAGCTCAGGCAGGTCCAGCACTATGCTCATTCAAACCACTGCCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTT-CCTCCACATCTCTTCAAGACACCTCTCTTCAATTCCCTCACTTAAAATTGCTGACTAGAAAGGACA--- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2029136 285 - 2117846 AGG-TATC-----ATAATTCAGTACACAAATGAGAAGGATATGATAAGAACTATCTTTCAGAAGATTTTCCAGCAGTAGTTGGGAAGACACTGGACCAGGGACTAGGAAAGAAGGGTTACT--ATTCATGAA---GC--TACAA----GAGCTCAGGCAGGTCCAGCACCACACTCATTCAAACCATTTCCAATCTCTACT-TCTACAACAGCCTTGACCTGTCTCCTACTTGACTGCTT-CCTCCATATC---TCAAGACACCTCTCTTCAATTCCCTCACTTAAAATCGCTGACCAGAAAGAAAA--- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8936888 284 - 16357246 AGG-TGTC-----ATAATTCAGTACACAAATGAGAAGGATATGACAAGAGCTATCTTTCAGAAGATTTTCCAGCAGTAGTTGGGAAGACACTGGACCAGGGACTAGGAAAGAAGGGTTACT--ATTCACGAA---GC--TACAA----GAGCTCAGGCAGGTCCAGCACCACGCTCATTC-AACCATTTCCAATCTCTACT-TCCACAACAGCCTTGACCTGTCTCTGACTTGACTGCTT-CATCCGTATC---TCAAGATACCTCTTTTCAATTCCCTCACTTAAAATCGCTGACTAGAAAGAAAG--- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1423305 284 - 1807191 AGG-TGTC-----ATAATTCAGTAC-CAAACGAGGAGGATATGACAAGAGCTATCTTTCAGAAGATTTTCCAGCAGTAGTTGGGAAGACACTGGACCAGGGACTAGGAAAGAAGAGTTACT--ATTCATGAA---GC--TACAA----GAGCTCAGGCAGGCCCAGCACCACACTCATTCAAACCATTTCCAATCTCTACT-TCCATAACAGCCTTGACTTGTCTCCTACTTGACTGCTT-CCTCCATATC---TCAAGACACCTCTCTTCAATTCCTTCACTTAAAATCGCTGACTAGAAAGAAAA--- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 54471 285 - 704494 AGG-TGTC-----ATAATTCAGTGAACAAACGAGAAGGATATGACAAGAGCTATCTTTCAGAAGATTTTCCAGCAGTAGTTGGGAAGACACTGGACCAGGGACTAGGAAAGAAGGGTTACT--ATTCATGAA---GC--TACAA----GAGCTCAGGCAGGTCCAGCACCATGCTCATTCAAACCATTTCCAATCTCTACT-TCCACAACAGCCTTGACCTGTCTCCTACTTGACTGCTT-CCTCCATATC---TCAAGACACCTCTCTTCAATTCCCTCACTTAAAATCGCTGACTAGAAAAAAAA--- i aotNan1.NW_018512389v1 C 0 I 128 s otoGar3.GL873526 36363134 277 - 42659167 AGGCTGTCAATACTTAATTCAGTACATAAATGGGAGTGATATGACAGGAG-TGTACTTTAGAAGGTTT--------TAGCTAAGAAGA-ACTAAATCAGGAAACAGTAAAGAAGGGTTACT--ACTCACAAG---GC--TCTAGTAACAAGTTCAGGGAGGGCTACCATCATCTTCATGC-AACCACTTTCAATCTCTATT-TCCACA--A--------CAGACTACTACTTAGCCAGTT-CCTTGGAATCTCCTCAAAGGATCTCTCTTTACTTTCCCTCATTCGAATTGCTGACTGGAAAGTAAA--- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46166077 284 - 69331447 AGG-CATCTACATTTAATTCAGTACACAACTGAGAGGGACATGACAAGAGCTGTATTTCAGAAGCTATCCTGGCAGTAGTT----AGAAACTGGACCAGGGACTGGGGAAGA---GTTATC--CTTCAGGAG---GCATGACAG----CAGCAGAAGCGGGTGTCCTACTTCCCTCATTCAAACTACTTCCCATCTCTAGTATCCACAACAGCCTT-----ATCTCCTACTCAGCTGCTT-CCTAGGCATCTTCTCAAGGGACCCCTCTTTGAACTCCTTTGCTTAAATCACTAACTAAAAAGGAAA--- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 166598 279 + 1056298 AGG-TGTCTATGTTTAACAGAGTACACAATCAAGACAGAT--GACGAGA------------AAGATTTTCTGGCAGTAGTTAGGAAGAGACTGAACCAGGGATTGGGAAAGAAGGATTACT--ATTCAAGACTATTC--CACAG----CAGCTCAGGCAGGCCTACCAC-ATGTTCAAACAAACCACTTCCAATCTCCACC-TCCACAAGGGCCATGACTTGTCACCTACTT-ATCGGTT-CCTCGGCATC---TCAAGGTACCTCTCTGCTGCTCCCTTGCCT-AAATCACTAATTAAAAAGAAAAATA i dasNov3.JH570235 I 395 C 0 a score=58310.000000 s hg38.chr22_GL383582v2_alt 158156 7 + 162811 AATTAAT- s panTro5.chr22 28937698 7 + 37823149 AATTAAT- i panTro5.chr22 C 0 C 0 s panPan2.chr22 41212367 7 + 50109623 AATTAAT- i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3235437 7 + 4464012 AATTAAT- i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728882 7 - 115148730 AATTAAT- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84347681 7 + 92844088 AATTAAT- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87694129 7 - 96509753 AATTAAT- i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7190772 7 - 13098629 AATTAAT- i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4150227 7 - 4483953 AATTAAT- i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24781018 7 + 33263144 AATTAAT- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14064377 7 - 14338769 AATTAAT- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1001407 7 + 1946073 AATTAAC- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2029421 7 - 2117846 AATTAAT- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8937172 7 - 16357246 AATTAAT- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1423589 7 - 1807191 AATTAAT- i cebCap1.NW_016107750v1 C 0 I 127 s otoGar3.GL873526 36363411 6 - 42659167 AACTCT-- i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46166361 6 - 69331447 -AATAAT- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 166877 7 + 1056298 -ATTCACT i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 54756 128 - 704494 I a score=22325.000000 s hg38.chr22_GL383582v2_alt 158163 2 + 162811 AG s panTro5.chr22 28937705 2 + 37823149 AG i panTro5.chr22 C 0 C 0 s panPan2.chr22 41212374 2 + 50109623 AG i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3235444 2 + 4464012 AG i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728889 2 - 115148730 AG i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84347688 2 + 92844088 AG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87694136 2 - 96509753 AG i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7190779 2 - 13098629 AG i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4150234 2 - 4483953 AG i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24781025 2 + 33263144 AG i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14064384 2 - 14338769 AG i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1001414 2 + 1946073 AG i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2029428 2 - 2117846 gg i calJac3.chrUn_GL286373 C 0 I 122 s saiBol1.JH378157 8937179 2 - 16357246 gg i saiBol1.JH378157 C 0 I 77 s otoGar3.GL873526 36363417 2 - 42659167 AG i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46166367 2 - 69331447 AG i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 166884 2 + 1056298 AG i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 54756 128 - 704494 I e cebCap1.NW_016107750v1 1423596 127 - 1807191 I a score=144282.000000 s hg38.chr22_GL383582v2_alt 158165 21 + 162811 TCTGTTCTACAGAA-GTGACTT s panTro5.chr22 28937707 21 + 37823149 TCTGTTCTACAGAA-GTGACTT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41212376 21 + 50109623 TCTGTTCTACAGAA-GTGACTT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3235446 21 + 4464012 TCTGTTCTACAGAA-GTGACTT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728891 21 - 115148730 TCTGTTCTACACAA-GCGATTT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84347690 21 + 92844088 TCTGTTCTAAAGAA-GTGATTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87694138 21 - 96509753 TCTGTTCTAAAGAA-GTGATTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7190781 21 - 13098629 TCTGTTCTAAAGAA-GTGATTT i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4150236 21 - 4483953 TCTGTTCTAAAGAA-GTGATTT i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24781027 21 + 33263144 TCTGTACTAAAGAA-GTGATTT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14064386 21 - 14338769 TCTGTTCTAAAGAA-GTGATTT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1001416 21 + 1946073 TCTGTTCTAAAGAA-GTGATTT i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8937258 22 - 16357246 cctgggcaagagagtgagactc i saiBol1.JH378157 I 77 I 14 s otoGar3.GL873526 36363419 21 - 42659167 TTTGTCCTACAAGA-GTGATTT i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46166369 20 - 69331447 TTTATCCTACAAAA-GTGATT- i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 166886 20 + 1056298 TTTACCCTACAAAT-GTGATT- i dasNov3.JH570235 C 0 C 0 e aotNan1.NW_018512389v1 54756 128 - 704494 I e cebCap1.NW_016107750v1 1423596 127 - 1807191 I e calJac3.chrUn_GL286373 2029430 122 - 2117846 I a score=1871031.000000 s hg38.chr22_GL383582v2_alt 158186 172 + 162811 AAAAAGTGAATATTGTAGACTGAT-ACAACCTTCT-GGTTCATAGCCTTTAcaacaaatatgttggctcctactgtgtgtcaggcactactctaggaaacatggatgcagacagggatggagtaggcaaagtttccatcccatggtg-cttac--atttt-gtgaaggaaacagat-----ac s panTro5.chr22 28937728 172 + 37823149 TTAAAGTGAATATTGTAGACTGAT-ACAACCTTCT-GGTTCACAGCCTTTAcaacaaatatgttggctcctactgtgtgccaggcactactctaggaaacatggatacagacagggatggagtaggcaaagtttccatcccatggtg-cttac--atttt-gtgaaggaaacagat-----ac i panTro5.chr22 C 0 C 0 s panPan2.chr22 41212397 172 + 50109623 TAAAAGTGAATATTGTAGACTGAT-ACAACCTTCT-GGTTCATAGCCTTTAcaacaaatatgttggctcctactgtgtgccagccactactctaggaaacatggatacagacagggatggagtaggcaaagtttccatcccatggtg-cttac--atttt-gtgaaggaaacagat-----ac i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3235467 172 + 4464012 AAAAAGTGAATATTGTGGACTGAT-ACAACCTTCT-GGTTCATAGCCTTTAcaacaaatatgttggctcctactgtgtgccaggcactactctaggaaacatggatgcagacagggatgaagtaggcaaagtttccatcccatggtg-cttac--atttt-gtgaaggaaacagat-----ac i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106728912 178 - 115148730 AAAAAGTGAATATTGTGGACTGAT-ATAACCTTCTGGGTTCACAGCCTTTAcaacaaatatgttggctcctactgtgtgccaggcactactctaggaaacatggatgcagacagagatggagtaggcaaagtttccatcccatgatg-cttac--atttt-gtgaaggaaacagatacaagac i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84347711 172 + 92844088 AAAAAGTGAATATTGTGGACTGAT-ATAACCTTCT-GGTTCACAGTTTTTAcaacaaatacgttggctcctaccgtgtgccaggctctactctaggaaacagggatgcagacagggatggagtaggccaagtttccattccatggtg-tttac--atttt-gtgaaggaaacagac-----aa i rheMac8.chr10 C 0 I 1 s macFas5.chr10 87694159 172 - 96509753 AAAAAGTGAATATTGTGGACTGAT-ATAACCTTCT-GGTTCACAGTTTTTAcaacaaatacgttggctcctaccgtgtgccaggctctactctaggaaacagggatgcagacagggatggagtaggccaagtttccattccatggtg-tttac--atttt-gtgaaggaaacagac-----aa i macFas5.chr10 C 0 I 1 s macNem1.NW_012012688v1 7190802 172 - 13098629 AAAAAGTGAATATTGTGGACTGAT-ATAACCTTCT-GGTTCACAGTTTTTAcaacaaatacgttggctcctaccgtgtgccaggctctactctaggaaacagggatgcagatagggatggagtaggccaagtttccattccatggtg-tttac--atttt-gtgaaggaaacagac-----aa i macNem1.NW_012012688v1 C 0 I 1 s cerAty1.NW_011999588v1 4150257 172 - 4483953 AAAAAGTGAATATTGTGGACTGAT-ATAACCTTCT-GGTTCACAGTTTTTAcaacaaatatgttggctcctaccgtgtgccaggctctactctaggaaacagggatgcagacagggatggagtaggccaagtttccattccatggtg-tttac--atttt-gtgaaggaaacagat-----aa i cerAty1.NW_011999588v1 C 0 I 1 s chlSab2.chr19 24781048 172 + 33263144 AAAAAGTGAATATTGTGGACTGAT-ATAACCTTCT-GGTTCACAGtttttacaacaaatatgttgcctcctaccgtgtgccaggctctactctaggaaacagggatgcagacagggatggagtaggccaagtttccattccatggtg-cttac--atttt-gtgaaggaaacaggt-----aa i chlSab2.chr19 C 0 I 1 s manLeu1.NW_012102031v1 14064407 172 - 14338769 AAAAAGTGAATATTGTGGACTGAT-ATAACCTTCT-GGTTCACAGtttttacaacaaatatgttggctcctaccgtgtgccaggctctactctaggaaacagggatgcagacagggatggagtaggccaagtttccattccatggtg-tttac--atttt-gtgaaggaaacagat-----aa i manLeu1.NW_012102031v1 C 0 I 1 s colAng1.NW_012115588v1 1001437 170 + 1946073 AAAAAGTGAATATTGTGGACTGAT-ATAACTTTCT-GGtt--cagtctttacaacaaatatgttggctcctaccgtgtgccaggctctactctaggaaacagggatgcagacacggatggagtaggccaagtttccattccatggtg-cttac--atttt-gtgaaggaaacagat-----aa i colAng1.NW_012115588v1 C 0 I 312 s calJac3.chrUn_GL286373 2029552 157 - 2117846 aaaaaGTGAATATTGTGGACTGAT-ATAACCTTCT-GGTTTATAGTCTTTAcaacacatatgttggcccctactgtgtgccaggctctactctctgaaac------------agggatggagaaggc--agtttccaacccatggtg-cttac--gtttt-g-ggaagaaacagat-----ga i calJac3.chrUn_GL286373 I 122 C 0 s saiBol1.JH378157 8937294 158 - 16357246 aaaaaGTGAATATTGTGGACTGAT-ACAACCTTCT-GGTTTATAGTCTTTacaacacatatgttggcccctactgtgtgccaggctctactctaggaaac------------agggatggagaaggc--agtttccatcccatggtg-cttac--atttt-gtgaaagaaacagat-----ga i saiBol1.JH378157 I 14 C 0 s cebCap1.NW_016107750v1 1423723 158 - 1807191 aaaaaGTGAATATTGTGGACTGAT-ACAACTTTCT-GGTTTATAGTCTTTAcaacacatatgttggtccctactgtgtgccaggctctactctaggaaac------------agggatggagaaggc--agtttccatcccatggtg-cttac--atttt-gtgaaagaaacagat-----ga i cebCap1.NW_016107750v1 I 127 C 0 s aotNan1.NW_018512389v1 54884 158 - 704494 aaaaaGTGAATATTGTGGACTGAT-ACAACCTTCT-AGTTTATAGTCTTTAcaacacatatgttggcccctactgtgtgccaggctctactctatgaaac------------agggatggagaaggc--agtttccatcccatggtg-cttac--atttt-gtgaaagaaacagat-----ga i aotNan1.NW_018512389v1 I 128 C 0 s otoGar3.GL873526 36363440 173 - 42659167 --AAAATGAATATTATGAACTGATAACAACCTTAT-GGTTCCTATTTGTTACAATTAACGTATCagctcctaccgtgtactaggttctactctagacaacaaggatgcaaactaggatgatgaaggcaaagtttctatcccatacag-cttactactgtt-gtggagaaaacagat-----aa i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46166389 166 - 69331447 -AAAAGCAGATCTTATGGACTGAT-AGAAC-TTAT-GGTATAGattctttacaacaaacatgtgagctctgactgtggaccatgtacagctctaggtaacagagatgc----aaaggtgaaggaggc--agtgtgtatcccacggagttttac--attttagtggaagaaagagat-----aa i canFam3.chr10 C 0 C 0 s dasNov3.JH570235 166906 141 + 1056298 -AAAAGGAAATTTTGGGAGTTGAT-ATAATTTTAT-GGTACATattctttacaacaaatatgtgagcaacaaatgtatgccgggcaccattctagggaacaggaatgc----aaaggtgaatgaggcaaaGTT---------------CT-----A-----GTGCAGG-AACAG--------- i dasNov3.JH570235 C 0 C 0 a score=5255522.000000 s hg38.chr22_GL383582v2_alt 158358 494 + 162811 aagac-------------------------aagactgtc--agataa-ttgctgtgaagg----gagaacagggc--tgagggagagagcacgtactcatg--tgggcgctgcctgggct-caggtgggcagggaaagcctGTCAGTGTGGGG----AGAAAGCAGCAGCCACATGGTGTACATTTTT----ACAAAGTATACATTTTACACTAAAAGGGAGAAa--caggttttgaagccacatagagttgcatgccagccctggctc-tatcactt--------ggtggctgaggaacc-----tcttccaaatgaa--tg-aatctctcttcagtctgtttctttatccccgttttacagataaaatactgactttattgggttattctgag---agaattaaataatgaatataaaa---cgtgcactgtgcctggtactgggtaagggatctgtaaatattaactACTGATTTACTACATCAGTGATTA-AATATACATAGAAATTATTTTGCTGCTATATCTAAACACTAG------ATTTAGCAAAAACTGTCTGCAATCAGTA s panTro5.chr22 28937900 494 + 37823149 aagac-------------------------aagactgtc--agataa-atgctgtgaagg----gagaacagggc--agagggagagagcacgtactcatg--tgggcgctgcctgggct-caggtgggcagggaaagcctGTCAGTGTGGGG----AGAAAGCAGCAGCCACATGGTGTACATTTTT----ACAAAGTATACATTTTACACTAAAAGGGAGAAa--caggttttgaagccacatagagctgcatgccagccctggctc-tatcactt--------ggtggctgaggaacc-----tcttccaaatgaa--tg-aatctctcttcagtctgtttctttatccccattttacagataaaatactgactttattgggttattctgag---agaattaaataatgaatataaaa---cgtgcactgtgcctggtactgggtaagggatctgtaaatattaactACTGATTTACTACATCAGTGATTA-AATATACATAGAAATTATTTTGCTGCTATATCTAAACACTAG------ATTTGGCAAGAACTGTCTGCAATCAGTA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41212569 494 + 50109623 aagac-------------------------aagactgtc--agataa-atgctgtgaagg----gagaacagggc--agagggagagagcacgtactcatg--tgggcgctgcctgggct-caggtgggcagggaaagcctGTCAGTGTGGGG----AGAAAGCAGCAGCCACATGGTGTACATTTTT----ACAAAGTATACATTTTACACTAAAAGGGAGAAa--caggttttgaagccacatagagctgcatgccagccctggctc-tatcactt--------ggtggctgaggaacc-----tcttccaaatgaa--tg-aatctctcttcagtctgtttctttatccccattttacagataaaatactgactttattgggttattctgag---agaattaaataatgaatataaaa---cgtgcactgtgcctggtattgggtaagggatctgtaaatattaactACTGATTTACTACATCAGTGATTA-AATATACATAGAAATTATTTTGCTGCTATATCTAAACACTAG------ATTTGGCAAAAACTGTCTGCAATCAGTA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3235639 493 + 4464012 aagac-------------------------aagactgtc--agataa-atgctgtgaagg----gagaacagggc--agagggagagagcacatactcatg--tgggtgctgcct-ggct-caggtgggcagggaaagcctGTCAGTGTGGGG----GGAAAGCAGCAGCCACATGGTGTACATTTTT----ACAAAGTATACATTTTACACTAAAAGGGAGAAa--caggttttgaagccacatagagctgcatgccagccctggctc-tatcactt--------ggtggctgaggaacc-----tcttccaaatgaa--tg-aatctctcttcagtctgtttctttatccccattttacagataaaatactgactttattgggctattctgag---agaattaaataatgaatataaaa---cgtgcactgtgcctggtactgggcaagggatctgtaaatattaactACTGATTTACTACATCAGTGATTA-AATATACATAGAAATTATTTTGCTGCTATATCTAAACACTAG------ATTTAGCAAAAACTGTCTGCAATCAGTA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106729090 485 - 115148730 aagac-------------------------aagactgtc--agataa-atgctgtgaagg----gagaacggggcagagagagagagagcacgtactcatg--tgggggctgcctgggct-caggtgggcagggaaggcctGTCAGCGTGGGG----AGAAAGCAGCAGCCACATGGTGTGCATTTTT----ACAAAGTATACATTTTACACTAAAAGGGAGAAa--caggttttgaagtcacatagagctgcctgccagccctggctc-tatcactt--------ggtggctgaggaact-----tcttccaaatgaa--cg-aatctctcttcagtctgtttctttatccccattttacagataaaatactgactttattgggttat--tgag---ag---------attaatatgaaa---tgtgcactgtgcctggtactgggtaagggatctgtaaatattaactACTGATTTACTAGATCAGTGATTA-AATATACACAGAAATTATTTTGCTGCTATATCTAAACACTAG------ATTTAGCAAAAACTGTCTGCAATCAGTA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84347884 479 + 92844088 aagac-------------------------aagactgtc--agataa-atgctgtgaagg-agagagaatggggc--agagggagagagcatgtactcatg--tgggggctgcgtgggct-caggtgggcagggaaggcctGTCAGTGTGGGG----AGAAAGCAGCAGCCACATGGTGTACATTTTC----ACAAAGCATACATTTtacattaaaatggagcaa--caggttttgaagccacatagagctgcatgatagccctggctc-tatcactt--------agtggctgagtaaac-----ttttccaaatgaa--tg-aatctctcttcagtctgtttctttatccccattttacagataaagtattgaccttattgggttattctgag---ataattaaataatgaatataaaa---agtgcaccgtgcctggtacttgg------------------taactactGATTTACTAGATCAGTGATTA-AATACACATAGAAATTATTTTGCTGCTGTATCTAAACACTAG------ATTTAGCAAAAACTGTCCGAAATCAGTA i rheMac8.chr10 I 1 C 0 s macFas5.chr10 87694332 479 - 96509753 aagac-------------------------aagactgtc--agataa-atgctgtgaagg-agagagaatggggc--agagggagagagcatgtactcatg--tgggggctgcgtgggct-caggtgggcagggaaggcctGTCAGTGTGGGG----AGAAAGCAGCAGCCACATGGTGTACATTTTC----ACAAAGCATACATTTtacattaaaatggagcaa--caggttttgaagccacatagagctgcatgatagccctggctc-tatcactt--------agtggctgagtaacc-----ttttccaaatgaa--tg-aatctctcttcagtctgtttctttatccccattttacagataaagtattgaccttattgggttattctgag---ataattaaataatgaatataaaa---agtgcactgtgcctggtacttgg------------------taactactGATTTACTAGATCAGTGATTA-AATACACATAGAAATTATTTTGCTGCTGTATCTAAACACTAG------ATTTAGCAAAAACTGTCCGAAATCAGTA i macFas5.chr10 I 1 C 0 s macNem1.NW_012012688v1 7190975 475 - 13098629 aagac-------------------------aagactgtc--agataa-atgctgtgaagg-agagagaatggggc--agagggagagagcatgtactcatg--tgggggctgcgtgggct-caggtgggcagggaaggcctGTCAGTGTGGGC----AGAAAGCAGCAGCCACATGGTGTACATTTTC----ACAAAGCATACATTTTACATTAAAATGgagcaa--caggttttgaagccacatagagctgcatgatagccctggctc-tatcactc--------agtggctgagtaacc-----ttttccaaatgaa--tg-aatctctcttcagtc----tctttatccccattttacagataaagtattgaccttattgggttattctgag---ataattaaataatgaatataaaa---agtgcactgtgcctggtacttgg------------------taaCTACTGATTTACTATATCAGTGATTA-AATACACATAGAAATTATTTTGCTGCTGTATCTAAACACTAG------ATTTAGCAAAAACTGTCCGAAATCAGTA i macNem1.NW_012012688v1 I 1 C 0 s cerAty1.NW_011999588v1 4150430 479 - 4483953 aagac-------------------------aagactgtc--agataa-atgctgtgaagg-agagagaatggggc--agagggagagagcacgtactcatg--tgggggctgcatgggct-caggtgggcagggaaggcctGTCAGTGTGGGG----AGAAAGCAGCAGCCACATGGTGTACATTTTC----ACAAAGCATACATTTTACATTAAAATGgagcaa--caggttttgaagccacatagagctgcatgatagccctggctc-tatcactt--------agtggctgagtaacc-----ttttccaaatgaa--tg-aatctctcttcagtctgtttctttatccccattttacagataaagtattgaccttattaggttattctgag---ataattaaataatgaatataaaa---agtgcactgtgcctggtacttgg------------------taaCTACTGATTTACTAGATCAGTGATTA-AATACACATAGAAATTATTTTGCTGCTGTATCTAAACACTAG------ATTTAGCAAAAACTGTCCGAAATCAGTA i cerAty1.NW_011999588v1 I 1 C 0 s chlSab2.chr19 24781221 479 + 33263144 aagac-------------------------aagactgtc--agataa-atgctgtgaagg-agagagaatggggc--agagggagagagcacgtactcatg--tgggggctgcctgggct-caggtgggcagggaaggcctGTCAGTGTGGGG----AGAAAGCAGCAGCCACATGGTATACATTTTC----ACAAAGCATACATTTtacattaaaatggagcaa--caggttttgaagccacatagagctgcatgatagccctggctc-tatcactt--------agtggctgagtaacc-----ttttccaaatgaa--tg-aatctctcttcagtctgtttctttatccccattttacagataaagtattgactttattgggttattctgag---ataattaaataatgaatataaaa---agtgcactgtgcctggtacttgg------------------taactactGATTTACTAGATCAGTGATTA-AATACACATAGAAATTACTTTGCTGCTGTATCTAAACACTAG------ATTTAGCAAAAACTGTCCGAAATCAGTA i chlSab2.chr19 I 1 C 0 s manLeu1.NW_012102031v1 14064580 479 - 14338769 aagac-------------------------aagactgtc--agataa-atgctgtgaagg-agagagaatggggc--agagggagagagcacgtactcatg--tgggggctgcgtgggct-caggtgggcagggaaggcctGTCAGTGTGGGG----AGAAAGCAGCAGCCACATGGTGTACATTTTC----ACAAAGCATACATTTtacattaaaatggagcaa--caggttttgaagccacatagagctgcatgatagccctggctc-tatcactt--------agtggctgagtaacc-----ttttccaaatgaa--tg-aatctctcttcagtttgtttctttatccccattttacagataaagtattgaccttattaggttattctgag---ataattaaataatgaatataaaa---agtgcactgtgcctggtacttgg------------------taactactGATTTACTAGATCAGTGATTA-AATACACATAGAAATTATTTTGCTGCTGTATCTAAACACTAG------ATTTAGCAAAAACTGTCCGAAATCAGTA i manLeu1.NW_012102031v1 I 1 C 0 s colAng1.NW_012115588v1 1001919 483 + 1946073 aagac-------------------------aagactgtc--agataa-atgctgtgaagg-acagagaatagggc--agagggagagagcacgtactcatg--tgggggctgcctgggct-caggtggacatggaaggcctGTCAGTGTGGAGAGAAAGAAAGCAGTAGCCACATGGTGTACATTTTC----ACAAAGCATACATTTtacattaaaagggagcaa--caggttttgaagccacatagagctgcatgatagccctggctc-tatcactt--------agtggctgagtaacc-----ttttccaaatgaa--tg-aatctctcttcagtctgtttctttatccccattttacagataaagtattgactttattgggttattctgag---agaattaaataatgaatataaaa---agtgcactgtgcctggtacTTGG------------------AAACTACTGATTTACTAGATCAGTGATTA-AATACACATAGAAATTATTTTGCTGCTATATCTAAACACTAG------ATTTAGCAAAAACTGTCTGAAATCAGTA i colAng1.NW_012115588v1 I 312 C 0 s calJac3.chrUn_GL286373 2029709 497 - 2117846 aagac-------------------------aacaatgtc--agataa-atgctatgaaaa-agaaagaatggggc--agaaggagagagcacgtacatatgagggggggctgcctgagct-caggtgggcaggggaggcctGTCGATGTGGGG----AGAAAGCAGGAGTCACATGGTATACATTTTT----ACAAAGTACACATTTTACATTAAAAGGGAGAAa--caggttttgaagccacacagagctgcatgccagccctggctc-tatcattt--------agtggttgagcgaca-----tcttccaaatgaa--tg-aatcttc-------atgtttctttatccccattttacagataaagtactgacactatttaatt-ctctcagaacagaatcaagtaatgagtatcaaatactgtgcactgtacctggtactggataagggatctgtacatattaactACTGATATACTAGATCAGTGATTA-AATACATATAGATGTTATTTTACTGCTATATCTAAACACTAG------ATTTAGCAAAAACTGTCTGAAATCAGTA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8937452 485 - 16357246 aagac-------------------------aacaatgtt--ggataa-atgctgtg-aaa-agaaagaatggggc--agagtgagagagcacatacatatga-ggggggctgcctgagct-caggtgggcaggggaggcctGTCAATGTGGGG----AGAAAGCAGTAGCCACATGGTATACATTTTT----ACAAAGTACACATTTTACATTAAAAGGGAGAAa--caggttttgaagccacacagagctgcatgccaaccctggctc-tatcactt--------agtggctgagcgaca-----tcttccaaatgaa--tg-aatctttgt----aatgtttctttatccccattttacagataaagtactgacactatttaatt-ctctcagaacagaatcaagtaatgaatatcaaatactgtgcactgtgcctggtactggataagggatctgtacatattaactACTGATATACTAGATCAGTGATTA-AATAC--ACAGACATTATTTTACTG-----------CACTAG------ATTTAGCAAAAACTGTCTGAAATCAGTA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1423881 496 - 1807191 aggac-------------------------aacaatgtc--agataa-atgctgtgaaaa-agaaagaatggggc--agagggacagagcacgtacatatga-ggggggctgcctgagct-caggtgggcaagggaggcctGTCAATGTGGGG----AGAAAGCAGTAGCCACATGGTATACATTTTT----ACAAAGTATACATTTTACATTAAAAgggaaaaa--caggttttgaagccacacacagctgcatgccagccctggctc-tatcatgc--------agtggctgagcgaca-----tcttccaaatgaa--tg-aatcttc-------atgtttctttatccccattttatagataaagtactgacactatttaatc-ctctcagaacagaatcaagtaatgaatatcaaatactgtgcactgtgcctggtactggataagggatctgtacatattaactactaatatACTAGATCAGTGATTA-AATACATATAGACATTATTTTACTCCTATATCTAAACACTAG------ATTTAACAAAAACTGTCTGAAATCAGTA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 55042 499 - 704494 aagac-------------------------aacaatgtc--agataa-atgctgtgaaaa-agaaagaatggggc--agagggagagagcatgtacatatgaaggggggctgcctgagct-caggtgggcaggggaggcctGTCAATGTGGGG----AGAAAGCAGTAGCCACATGGTATAC-TTTTT----ACAAAGTACACATTTtacattaaaagggagaca--caggttttgaagccacaaagagctgcatgccagccctggctc-tatcactt--------agtggctgagcgaca-----tcttccaaatgaa--tg-aatcttcat----aatgtttctctatccccattttacagataaagtactgacactatttaatt-ctctcagaacagaatcaagtaatgaatatcaaatactgtgcactgtgcctggtactggataagggatctgtacatattaactACTGATATACTAGATCAGTGATTA-AATACACAAAGACATTATTTTACTGCTATATCTAAACACTAG------ATTTAGCAAAAACTGTCTGAAATCAGTA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36363613 509 - 42659167 aagaccatatgagataaatgaaactgataaaagaccgtatgagacag-atgctattatga---agacagtgggac--agaggaagaggACGCGTGTGAACA--TGGAGACTGCCTGAACT-CAGGAGGG--------GCTT-----TCTGGGT----AGAAGGAAGCAGCCATGTGGTGTGCATTTTT----ATGATACACAT-TTTTATGTTAAAAAggaaaaa--cagattttggagccacacagagttgcattctagccctggctc-tatcactt--------agtgactgagtgaccacccaccttcccaaagaggctg-aatctctcttgaaactgtttatttatcctcattttataaataaggtattgattttataggctgatttgtag-----aattaaataatgaatgtaaat-actgtgcactgtgtctggtacactgtga-----ttatcaatgttagctATTGAT----TAGATCAGTGGTTA-ACTATACATACAAGTTACTTTGCTGCTATATCTAAAAACTAG---ATAATTTAGAATAAACTGTCTGAAATTggtg i otoGar3.GL873526 C 0 C 0 s canFam3.chr10 46166555 449 - 69331447 aagac-------------------------aatg-tgtc--agataa-atgctgtggaga------------gaa--agaggcagagagcatgtgtgtaca--tgggggctgcctgagca-t-ggtgggt---------------------gg----agaaggAAGCAGCCAGGGAGTGCGCATTTTT----ACAAGGTACACATTTTACATTAAAAGggagaaaaccaggctttggagccacaaagagctgggttcaagcctgggttc-tgtcacttaatgaatgaatggctgcgtgacc-----tcttgcaaataat--------ctctcttgaa------tctttatccccattttacagaaaaagtactgacttcataaagct-cactgtg---agaattaaataatgaatataaat--------actatgc-----gcttggtaaagcatatataaatgttagccat--------taGATTAGTGGCTT-AACATACACAGAAATTATTTTGCTGCTATATTTAAAAACTAGATAATAATTTGGCATAAGCTGTCTAAAACAAGTA i canFam3.chr10 C 0 N 0 s dasNov3.JH570235 167047 487 + 1056298 -AGAC-------------------------AAAAATGTC--AGATAATTTGTTGTGAAGGAAAAAAGAGTGGGGC--AG---GAGAGAGCATGTGTGCCTG--AGGAGGCTACCTGAGCCACCACTGGTC-------TCCCCTCCTTTCACAG----AGAGGGAAGCAATCACATGGCATGGGCTTTTTATAAAAAGGTATACATTTTACAttaaaa-gcaaaaa--caagctttggagcc----agagctgggttccagcactggctcttatcattt--------agtggctgagtgacc-----tctggcaaattac--tgaaatctctcttgaatctgtttttacagccacattttactgac----ctttagccccactttacccttttgag---tgaattaaataa--aataatagacactgtgatctgtgtctggcacttgatgagggatctatatatgataaata----ttTATTAAATCAATAGTTATAACACACCTAAAAATTATTACACAGTTAAACCTAAAAACTAG---ATAATTAAGCAAAATCTATCTGCAATAAATG i dasNov3.JH570235 C 0 C 0 a score=15300.000000 s hg38.chr22_GL383582v2_alt 158852 1 + 162811 C s panTro5.chr22 28938394 1 + 37823149 C i panTro5.chr22 C 0 C 0 s panPan2.chr22 41213063 1 + 50109623 C i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3236132 1 + 4464012 C i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106729575 1 - 115148730 C i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84348363 1 + 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87694811 1 - 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7191450 1 - 13098629 C i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4150909 1 - 4483953 C i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24781700 1 + 33263144 C i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14065059 1 - 14338769 C i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1002402 1 + 1946073 C i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2030206 1 - 2117846 C i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8937937 1 - 16357246 C i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1424377 1 - 1807191 C i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 55541 1 - 704494 C i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36364122 1 - 42659167 c i otoGar3.GL873526 C 0 C 0 s dasNov3.JH570235 167534 1 + 1056298 C i dasNov3.JH570235 C 0 N 0 a score=380624.000000 s hg38.chr22_GL383582v2_alt 158853 35 + 162811 CAAT-------------cataatcccaaatgccataatcctgaatgtt s panTro5.chr22 28938395 35 + 37823149 CAAT-------------cataatcccaaatgccataatcctgaatgtt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41213064 35 + 50109623 CAAT-------------cataatcccaaatgccataatcctgaatgtt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3236133 35 + 4464012 CAAT-------------cataatcccaaatgccataatcctgaatgtt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106729576 35 - 115148730 CAAT-------------cataatcccaaatgccgtaatcctgaatgtt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84348364 35 + 92844088 CAAT-------------cataatcccaaatgccataatcctcaatgtt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87694812 35 - 96509753 CAAT-------------cataatcccaaatgccataatcctcaatgtt i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7191451 35 - 13098629 CAAT-------------cataatcccaaatgccataatcctcaatgtt i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4150910 35 - 4483953 CAAT-------------cataatcccaaatgtcataatcctcaatgtt i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24781701 35 + 33263144 CAAT-------------cataatcccaaatgccataatcctcaatgtt i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14065060 35 - 14338769 CAAT-------------cataatcccaaatgtcataatcctcaatgtt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1002403 35 + 1946073 CAAT-------------cataatcccaaatgccataatcctcaacgtt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2030207 35 - 2117846 Cagt-------------cataatcccaaatgtcataatcctgaatttt i calJac3.chrUn_GL286373 C 0 I 51 s saiBol1.JH378157 8937938 35 - 16357246 Cagt-------------cataatcccaaatgccataatcctgaatgtt i saiBol1.JH378157 C 0 I 53 s cebCap1.NW_016107750v1 1424378 35 - 1807191 Cagt-------------cataatgccaaatgccataatcctgaatgtt i cebCap1.NW_016107750v1 C 0 I 973 s aotNan1.NW_018512389v1 55542 35 - 704494 Cagt-------------cataatcccaaatgtcataatcctgaatgtt i aotNan1.NW_018512389v1 C 0 I 49 s otoGar3.GL873526 36364123 48 - 42659167 caatcaatcccaaaagacacaatcctggatcccataattctaaatgtt i otoGar3.GL873526 C 0 C 0 a score=1597751.000000 s hg38.chr22_GL383582v2_alt 158888 175 + 162811 aaaatcccaaaagacta--------aagtct----------aaaaatccctaatgtttaaaa---------------ccacaaccccaaaagattaaaatcccaaatgatgaaatcccaaaagccgaattttggggcagggaatttgcatagttttggttgtacacaa--tagttacaccatgctaggt-ggaactatgaccttgctattg s panTro5.chr22 28938430 175 + 37823149 aaaatcccaaaagacta--------aagtct----------aaaaatccctaatgtttaaaa---------------ccacaaccccaaaagattaaaatcccaaatgatgaaatcccaaaagccgaattttggggcaggggatttgcatagttttggttgtacacaa--tagttacaccatgctaggt-ggaactatgaccttgctattg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41213099 175 + 50109623 aaaatcccaaaagacta--------aagtct----------aaaaatccctaatgtttaaaa---------------ccacaaccccaaaagattaaaatcccaaatgatgaaatcccaaaagccgaattttggggcaggggatttgcatagttttggttgtacacaa--tagttacaccatgctaggt-ggaactatgaccttgctattg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3236168 175 + 4464012 aaaatcccaaaagacta--------aagtct----------aaaaatccctaatgtttaaaa---------------ccacaaccccaaaagattaaaatcccaaatgatgaaatcccaaaagccgaattttggggcaggggatttgcatagttttggttgtacacaa--tagttacaccatgctaggt-ggaactatgaccttgctattg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106729611 175 - 115148730 aaaatctcaaaagacta--------aagtct----------aaaaatccctgatgtttaaaa---------------ccacaaccccaaaagattaaaatcccaaatgttgaaatcccaaaagccaaattttggggcaggggatttgcatagttttggttgtacacaa--cagttacaccatgctaggt-agaattatgaccttgctattg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84348399 175 + 92844088 aaaatcccaaaagacta--------aagtct----------aaaaatccctaatgtttaaaa---------------tcacaaccccaaaagattaaaatcccaaatgttgaaattccaaaagccaaattttggggcaggggatttgcatagttttggttgtacacaa--tagttacaccatgctaggt-ggaactatgaccttgctattg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87694847 175 - 96509753 aaaatcccaaaagacta--------aagtct----------aaaaatccctaatgtttaaaa---------------tcacaaccccaaaagattaaaatcccaaatgttgaaattccaaaagccaaattttggggcaggggatttgcatagttttggttgtacacaa--tagttacaccatgctaggt-ggaactatgaccttgctattg i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7191486 175 - 13098629 aaaatcccaaaagacta--------aagtct----------aaaaatccctaatgtttaaaa---------------tcacaaccccaaaagattaaaatcccaaatgttgaaattccaaaagccaaattttggggcaggggatttgcatagttttggttgtacacaa--tagttacactatgctaggt-ggaactatgaccttgctattg i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4150945 175 - 4483953 aaaatcccaaaagacta--------aagtct----------aaaaatccctaatgtttaaaa---------------tcacaaccccaaaagattaaaatcccaaatgttgaaattccaaaagccaaattttggggcaggggatttgcacagttttggttgtacacaa--tagttacaccatgctaggt-ggaactatgaccttgctattg i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24781736 175 + 33263144 aaaatcccaaaagacta--------aagtct----------aaaaatccctaatgtttaaaa---------------tcacaaccccaaaagattaaaatcccaaatgttgaaattccaaaagccaaactgtggggcaggggatttgcatagttttggttgtacacaa--tagttacaccatgctaggt-ggaactatgaccttgctattg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14065095 175 - 14338769 aaaatcccaaaagacta--------aagtct----------aaaaatccctaatgtttaaaa---------------tcacaaccccaaaagattaaaatcccaaatgttgaaattccaaaagccaaattttggggcaggggatttgcatagttttggttgtacacaa--tagttacaccatgctaggt-ggaactatgaccttgctattg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1002438 175 + 1946073 aaaatcccaaaagacta--------aagtct----------aaaaatccctaatgtttaaaa---------------tcacaaccccaaaagattaaaatcccaaatgttgaaattccaaaagccaaattttgggacaggggatttgcatagttttggttgtacacaa--tagttacaccatgctaggt-ggaactatgaccttgctattg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2030293 183 - 2117846 aaaattccaaaagactaaagcccctaagtct----------aaaaatccctaatggtgaaaa---------------tcacaaccccaaaagagtaaaatcccaactgctgaaatcccaaaaaccaaattttggaa-agagggtttgcagag-tttggttgtacacaatgtagttgcatcatcctaggt-ggaactatgaccttgctattg i calJac3.chrUn_GL286373 I 51 C 0 s saiBol1.JH378157 8938026 182 - 16357246 aaaatcccaaaagactaaagcccc-aagtct----------aaaaatccctaatgttgaaaa---------------ctgcaaccccaaaagagtaaaatcccaactgttgaaatcccaaaagccaaagtataggg-agggggtttgcatag-cttggttgtacacaatatagttgcgtcatcctgggt-gggactatgagcttgctattg i saiBol1.JH378157 I 53 I 1121 s aotNan1.NW_018512389v1 55626 181 - 704494 aaaattacaaaagactaaagcctctaagtct----------aaaaatccctaatgttg-aaa---------------tcacaaccccaaaagagtaaaatcccaactgctgaaatcccaaaagccaaattttgggg-aggggttttgcatag-tttggttgtacacaatatagttgcatcatcctaggt--gaactatgaccttgctattg i aotNan1.NW_018512389v1 I 49 C 0 s otoGar3.GL873526 36364171 202 - 42659167 aaaataccaaaggatca--------aaatcccttaaatctaaaaaatacctaaagtcaaaaatcctggaaaaaaaagtcacaattctgaaagattaaaatcccaaattctgaattcctgaaagccaaattccagga-aagggctttgtgtattttcacttgtatacaagacagctgcatcaacttaggcaaaaactataaccttattaatg i otoGar3.GL873526 C 0 C 0 e cebCap1.NW_016107750v1 1424413 973 - 1807191 I a score=4151406.000000 s hg38.chr22_GL383582v2_alt 159063 525 + 162811 tcattatctggaaattaagtatggtttaaggagatgcctatgggt--accaagttgccgagga-tagatttgtggacttaattttagctatcaacttgaca--g-------gaacacctagaaacctggtaaagcactgtgttgtgtg-tgtgtctgtgaggatgttttcagagattagtgtgcg-agtctgagtaggc----aaggaga---------gccc--------------------tctatgttggtgggtatcatccaatcagccaggagcccagggagtacacagaaggtgaattgct----gagagctagaacagacttttcttctgctgccttggacatcagaactccaggcttgccagcctttggactccaggacttaaccagtggccccct-----gaattctgaggctttttgaccttggaccgagagataacaccattagcttccctggttctgaggcctttggatttggactgaggtatgctactggcatcccagggtctcaagcctgcagatgatctgtcatgggacttctcagccaccattaatcatatgagccaattcccct s panTro5.chr22 28938605 525 + 37823149 tcattatctggaaattaagtatggtttaaggagatgcctatgggt--accaagttgccgagga-tagatttgtggacttaattttagctatcaacttgaca--g-------gaacacctagaaacctggtaaagcactgtgttgtgtg-tgtgtctgtgaggatgttttcagagattagtgtgcg-agtctgagtaggc----aaggaga---------gccc--------------------tctatgttggtgggtatcatccaatcagccaggagcccagggagtacacagaaggtgaattgct----gagagctgggacagacttttcttctgctgccttggacatcagaactccaggcttgccagcctttggactccaggacttaaccagtggccccct-----gaattctgaggctttttgaccttggaccgagagataacagcattagcttccctggttctgaggcctttggatttggactgaggtatgctactggcatcccagggtctcaagcctgcagatgatctgtcatgggatttctcagccaccattcattatatgagccaattcccct i panTro5.chr22 C 0 C 0 s panPan2.chr22 41213274 525 + 50109623 tcattatctggaaattaagtatggtttaaggagatgcccatgggt--accaagttgccgagga-tagatttgtggacttaattttagctatcaacttgaca--g-------gaacacctagaaacctggtaaagcactgtgttgtgtg-tgcgtctgtgaggatgttttcagagattagtgtgcg-agtctgagtaggc----aaggaga---------gccc--------------------tctatgttggtgggtatcatccaatcagccaggagcccagggagtacacagaaagtgaattgct----gagagctgggacagacttttcttctgctgccttggacatcagaactccaggcttgccagcctttggactccaggacttaaccagtggccccct-----gaattctgaggctttttgaccttggaccgagagataacagcattagcttccctggttctgaggcctttggatttggactgaggtatgctactggcatcccagggtctcaagcctgcagatgatctgtcatgggacttctcagccaccattaattatatgagccaattcccct i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3236343 525 + 4464012 tcattatttggaaattaagtatggtttaaggagatgcctatgggt--gccaagttgccgagga-tagatttgtggacttaattttagctatcaacttgaca--g-------gaacacctagaaacctggtaaagcactgtgttgtgtg-tgtgtctgtgaggatgttttcagagattagtgtgcg-agtctgagtaggc----gaggaga---------gccc--------------------tctatgttggtgggtatcatccaatcagccaggagcccagagagtacacagaaggtgaattgct----gagagctgggacagacttttcttctgctgccttggacatcagaactccaggcttgccagcctttggactccaggacttaaccagtggccccct-----gaattctgaggctttttgaccttggaccgagagataacaccattagcttccctggttctgaggcctttggatttggactgaggtatgctactggcatcccagggtctcaagcctgcagatgatctgtcatgggacttctcagccaccattaattatatgaggcaattcccct i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106729786 523 - 115148730 tcattatttggaaattaagtacggttgaaggagatgcctatgggtacaccaagttgccaagga-tagatttgtggacttaattttagctatcaacttgaca--g-------gaacacctagaaacctggtaaagcactgtgttgtgt-----gtctgtgaggatgttttcagagattagtgtgcg-agtctgagtaggc----aaggaaa---------gccc--------------------tctatgttggtgggtaccatccagtcagccaggagcccagagagtacacagaaggtgaattgct----gagagctgggacagacttttcttccactgccttggacatcagaactccaggcttgccagcctttggactccaggacttaaccagtggccccct-----gacttctgagactttttgaccttggaccaagagataacaccattagtttccctggttctgaggcctttggatttggactgaggtatgctactggcatcccagggtctcaagcctgcagacgatctgtcatgggacttctcagccaccattaattatatgagccaattcccct i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84348574 511 + 92844088 tcattatttggaaattaagtatggtttaaggagatgcctatgggt--accaagttgccaagga-tagatctgtggacttaattttagctatcaacttgacc----------gaacacctagaaacctggtaaagcactgtgtcgtgtg-t--gtctgtgagggtgtttccggagattagtgtgcgaagtctcagtaggc----aaggacg---------gccc--------------------tctatgttggtgggtaccatccaatcagccaggagcccagagagtacaaagaaggtgaattgct----gagagctgggacagacttttcttctgctgccttggacatcagaactccatgcttgccagcctttggactccaggacttaatcagtggccccct-----gggttctgaggctttttgaccttggaccgagagagaacatcattag-----------ctgaggcctttggatttgcactgaggtatgctactggcatcccagggtctcaagtctgcagatgatctgtcgtgggacttctcagccacca-taattatatgagccaattcccct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87695022 511 - 96509753 tcattatttggaaattaagtatggtttaaggagatgcctatgggt--accaagttgccaagga-tagatctgtggacttaattttagctatcaacttgacc----------gaacacctagaaacctggtaaagcactgtgtcgtgtg-t--gtctgtgagggtgtttccggagattagtgtgcgaagtctcagtaggc----aaggacg---------gccc--------------------tctatgttggtgggtaccatccaatcagccaggagcccagagagtacaaagaaggtgaattgct----gagagctgggacagacttttcttctgctgccttggacatcagaactccatgcttgccagcctttggactccaggacttaatcagtggccccct-----gggttctgaggctttttgaccttggaccgagagagaacaccattag-----------ctgaggcctttggatttgcactgaggtatgctactggcatcccagggtctcaagtctgcagatgatctgtcgtgggacttctcagccacca-taattatatgagccaattcccct i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7191661 511 - 13098629 tcattatttggaaattaagtatggtttaaggagatgcctatgggt--accaagttgccaagga-tagatctgtggacttaattttagctatcaacttgacc----------gaacacctagaaacctggtaaagcactgtgtcgtgtg-t--gtctgtgagggtgtttccggagattagtgtgcgaagtctcagtaggc----aaggacg---------gccc--------------------tctatgttggtgggtaccatccaatcagccaggagcccagagagtacaaagaaggtgaattgct----gagagctgggacagacttttcttctgctgccttggacatcagaactccatgcttgccagcctttggactccaggacttaatcagtggcaccct-----gggttctgaggctttttgaccttggaccgagagagaacaccattag-----------ctgaggcctttggatttgcactgaggtatgctactggcatcccagggtctcaagtctgcagatgatctgtcgtgggacttctcagccacca-taattatatgagccaattcccct i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4151120 511 - 4483953 tcattatttggaaattaagtatggtttaaggagatgcctatgggt--accaagttgccaagga-tagatctgtggacttaattttagctatcaacttgacc----------gaacacctagaaacctggtaaagcactgtgtcgtgtg-t--gtctgtgagggtgtttccggagattagtgtgcgaagtctcagtaggc----aaggacg---------gccc--------------------tctatgttggtgggtaccatccaatcagccaggagcccagagagtacaaagaaggtgaattgct----gagagctgggacagacttttcttctgctgccttggacatcagaactccatgcttgccagcctttggactccaggacttaatcagtggccccct-----gggttctgaggctttttgaccttggaccgagagagaacaccattag-----------ctgaggcctttggatttggactgaggtatgctactggcatcccagggtctcaagtctgcagatgatctgtcgtgggacttctcagccacca-taattatatgagccaattcccct i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24781911 511 + 33263144 tcattatttggaaattaagtatggtttaaggagatgcctatgggt--accaagttgccaagga-tagatctgtggacttaattttagctatcaacttgacc----------gaacacctagaaacctggtaaagcactgtgtcgtgtg-t--gtctgtgagggtgtttccggagattagtgtgcaaagcctcaggaggcaaggaaggacg---------gccc--------------------tctatgttggtgggtatcatccagtcagccaggagcccagagagtacaaagaaggtgaattact----gagagctgggacagacttttcttctgctgccttggacatcagaactccatgcttgccagcctttggactccaggacttaatcagtggccccct-----gggttctgaggctttttgaccttggact--gagagaacaccattag-----------ctgaggcctttggatttggactgaggtatgctactggcatcccagggtctcaagtctgcagatgatctgtcgtgggacttctcagccacca-taat--tatgagccaattcccct i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14065270 511 - 14338769 tcattatttggaaattaagtatggtttaaggagatgcctatgggt--accaagttgccaagga-tagatctgtggacttaattttagctatcaacttgacc----------gaacacctagaaacctggtaaagcactgtgtcgtgtg-t--gtctgtgagggtgtttccggagattagtgtgcgaagtctcagtaggc----aaggacg---------gccc--------------------tctatgttggtgggtaccatcccatcagccaggagcccagagagtacaaagaaggtgaattgct----gagagctgggacagacttttcttctgctgccttggacatcagaactccatgcttgccagcctttggactccaggacttaatcagtggccccct-----gggttctgaggctttttgaccttggaccgagagagaacaccattag-----------ctgaggcctttggatttggactgaggtatgctactggcatcccagggtctcaagtctgcagatgatctgttgtgggacttctcagccacca-taattatatgagccaattcccct i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1002613 511 + 1946073 tcattatttggaaattaagtatggtttaaggagatgcctatgggt--accaagttgccaagga-tagatctgtggactcaattttagctatcaacttgacc----------aaacacctagaaacttggtaaagcaccgtatcgtgtg-t--gtctgtgagggtgtttccggagattagtgtgcaaagtctcagtaggc----aaggagg---------gccc--------------------tctatgttggtgggtaccatccaatcagccaggagcccagagagtacacagagggtgaattgct----gagagctgggacagacttttcttctgctgccttggacatcagaactccatgcttgccagcctttggactccaggacttaaccagtgggcccct-----gggttctgaggctttttgaccttggaccgagagataacaccattag-----------ctgaggcctttggatttgaactgaggtatgctaccggcatcccagggtctcaagtctgcagatgatctgtcgtgggacttctcagccacca-taattatacaagccaattcccct i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2030476 543 - 2117846 ---ttatttggaaattaagtatggtttaaggagatgcctgtgggt--accaagttgccaaggg-cagatgcctggacttaactttaggtgtcaacttgact--ggaagaaggaacacctagaaacccggtgaagcactgcattgggta-t--gtctgtgcgggtgtttccggagattggtctgtg-ggtctgagtgggc----agggagg---------gcccacagcccaccaacattgagccctatgttggtgggctccatccaatcagccaggagtccagagagtacacaaaaggtgaattgctgtctgagagctgggacaggcttttcttctgctgccttggacatc-gaactccaggcttgccagcctttggactccaggacttaaccagtggccccct-----gggttctgaggctttttaaccttggactgagagataacgccattagcttccctggttctgaggcctttggattttt-----gttatactactagcatcccagggtctc-agcctgcagatgatctgttgtgggacttctcagccacca-taattacatgagccaattcccct i calJac3.chrUn_GL286373 C 0 C 0 s aotNan1.NW_018512389v1 55807 541 - 704494 ttgttatttggaaattaagtatggtttaaggagatgcctatgggc--acccagttgccgaggg-tagatctgcagacttaattttagttatcaacttgact--ggaagaaagaacacctggaaacctggtgaagcactgcgttgggtgtt--gtctgtgagggtgtttccagagatta----gtg-agtctgagtaggc----agggagg---------gcccatagcccaccaacatggagacctatgttggtgggcttcatccaatcagccaggagcccaaagagtacacagaaggtgaactgctgtccgagagctgagacagac--ttcttctgctgccttggacatc-gaactccaggcttgccagcctttggactccaggacttaaccagtggccccct-----gggttctgaggctttttaaccttagactgagagataacaccattagcttccctggttctgaggcctttggattttt-----gttacactactagcatcccagggtctc-agcctgcagatgatctgttgtgggacttctcagccacca-taattacatgagccaattcccct i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36364373 531 - 42659167 tctttatttggaatctaagtgtggtttaaggagat---tatggat--gctgggctgacaaggagtggatgtgtggatttaattttaggtgtcaactggattaag-------aaatgcctagaaagttggtagagcattattttgggtg-t--tcctgtaaggatatttccagagattagtgtgtg-agtctcagtggat----gaggtggggaagatctgccc--------------------tggatgctgatggacaccatccagttggctagagactaagagaaaacacaaagggtaaactggtccttgaaagatggaatagacttttaatctgctgccttggacatcagtactccaggcttgctaacctgtggacaccaggactta---agtagccccctcaccctggtcctgag-ccttctggcctcagaccaag-----acactattggcttccctcattctaaagcctttggacttggactgagccatgctactgacatcccagggtctccagcttgcagacagcctgtagtgggacttctcagcctcca-taattgtggaagtcattcccctt i otoGar3.GL873526 C 0 C 0 e cebCap1.NW_016107750v1 1424413 973 - 1807191 I e saiBol1.JH378157 8938208 1121 - 16357246 I a score=70902.000000 s hg38.chr22_GL383582v2_alt 159588 13 + 162811 aataaattccctc---------------------------------------------------------------------------------------- s panTro5.chr22 28939130 13 + 37823149 aataaattccctc---------------------------------------------------------------------------------------- i panTro5.chr22 C 0 I 2 s panPan2.chr22 41213799 13 + 50109623 aataaattccctc---------------------------------------------------------------------------------------- i panPan2.chr22 C 0 I 2 s gorGor5.CYUI01015375v1 3236868 13 + 4464012 aataaattccctc---------------------------------------------------------------------------------------- i gorGor5.CYUI01015375v1 C 0 I 2 s nomLeu3.chr7b 106730309 13 - 115148730 aataaattccctc---------------------------------------------------------------------------------------- i nomLeu3.chr7b C 0 I 2 s rheMac8.chr10 84349085 13 + 92844088 aataaattctctt---------------------------------------------------------------------------------------- i rheMac8.chr10 C 0 I 2 s macFas5.chr10 87695533 13 - 96509753 aataaattctctt---------------------------------------------------------------------------------------- i macFas5.chr10 C 0 I 2 s macNem1.NW_012012688v1 7192172 13 - 13098629 aataaattctctt---------------------------------------------------------------------------------------- i macNem1.NW_012012688v1 C 0 I 2 s cerAty1.NW_011999588v1 4151631 13 - 4483953 aataaattctctt---------------------------------------------------------------------------------------- i cerAty1.NW_011999588v1 C 0 I 2 s chlSab2.chr19 24782422 13 + 33263144 aataaattctctt---------------------------------------------------------------------------------------- i chlSab2.chr19 C 0 I 2 s manLeu1.NW_012102031v1 14065781 13 - 14338769 aataaattatctt---------------------------------------------------------------------------------------- i manLeu1.NW_012102031v1 C 0 I 2 s colAng1.NW_012115588v1 1003124 13 + 1946073 aataaattccctt---------------------------------------------------------------------------------------- i colAng1.NW_012115588v1 C 0 I 2 s calJac3.chrUn_GL286373 2031019 13 - 2117846 aataaattccctc---------------------------------------------------------------------------------------- i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8939329 13 - 16357246 aaaaaattgcctc---------------------------------------------------------------------------------------- i saiBol1.JH378157 I 1121 C 0 s aotNan1.NW_018512389v1 56348 13 - 704494 aataaattccctc---------------------------------------------------------------------------------------- i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36364904 101 - 42659167 aatagatccccttttatacaacggctgtctggcaagtatctagccactgttaatactgtttttcatattgcatggctggatactttccagacagccctcgt i otoGar3.GL873526 C 0 C 0 e cebCap1.NW_016107750v1 1424413 973 - 1807191 I a score=10424.000000 s hg38.chr22_GL383582v2_alt 159601 1 + 162811 a s panTro5.chr22 28939145 1 + 37823149 a i panTro5.chr22 I 2 C 0 s panPan2.chr22 41213814 1 + 50109623 a i panPan2.chr22 I 2 C 0 s gorGor5.CYUI01015375v1 3236883 1 + 4464012 a i gorGor5.CYUI01015375v1 I 2 C 0 s nomLeu3.chr7b 106730324 1 - 115148730 a i nomLeu3.chr7b I 2 C 0 s rheMac8.chr10 84349100 1 + 92844088 a i rheMac8.chr10 I 2 C 0 s macFas5.chr10 87695548 1 - 96509753 a i macFas5.chr10 I 2 C 0 s macNem1.NW_012012688v1 7192187 1 - 13098629 a i macNem1.NW_012012688v1 I 2 C 0 s cerAty1.NW_011999588v1 4151646 1 - 4483953 a i cerAty1.NW_011999588v1 I 2 C 0 s chlSab2.chr19 24782437 1 + 33263144 a i chlSab2.chr19 I 2 C 0 s manLeu1.NW_012102031v1 14065796 1 - 14338769 a i manLeu1.NW_012102031v1 I 2 C 0 s colAng1.NW_012115588v1 1003139 1 + 1946073 a i colAng1.NW_012115588v1 I 2 C 0 s calJac3.chrUn_GL286373 2031032 1 - 2117846 a i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8939342 1 - 16357246 a i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1425386 1 - 1807191 a i cebCap1.NW_016107750v1 I 973 C 0 s aotNan1.NW_018512389v1 56361 1 - 704494 a i aotNan1.NW_018512389v1 C 0 I 301 s otoGar3.GL873526 36365005 1 - 42659167 g i otoGar3.GL873526 C 0 C 0 a score=35176.000000 s hg38.chr22_GL383582v2_alt 159602 3 + 162811 tat s panTro5.chr22 28939146 3 + 37823149 tat i panTro5.chr22 C 0 C 0 s panPan2.chr22 41213815 3 + 50109623 tat i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3236884 3 + 4464012 tat i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106730325 3 - 115148730 tat i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84349101 3 + 92844088 tat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87695549 3 - 96509753 tat i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7192188 3 - 13098629 tat i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4151647 3 - 4483953 tat i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24782438 3 + 33263144 tat i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14065797 3 - 14338769 tat i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1003140 3 + 1946073 tat i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2031033 3 - 2117846 tat i calJac3.chrUn_GL286373 C 0 I 3142 s saiBol1.JH378157 8939343 3 - 16357246 cat i saiBol1.JH378157 C 0 I 2 s cebCap1.NW_016107750v1 1425387 3 - 1807191 tat i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 56663 3 - 704494 tat i aotNan1.NW_018512389v1 I 301 C 0 s otoGar3.GL873526 36365006 3 - 42659167 tat i otoGar3.GL873526 C 0 C 0 a score=1183611.000000 s hg38.chr22_GL383582v2_alt 159605 126 + 162811 ctatacacatatcctattggttctgtctccctagggaaccctgactaatgcagatttggtgttggggaagctgagtatcagttcttctt--------------------------------------actttattctttacagcacaattgaagagatctgtga s panTro5.chr22 28939149 126 + 37823149 ctatacacatatcctattggttctgtctccctagggaaccctgactaatacagatttggtgttggggaaactgagtatcatttcttctt--------------------------------------actttattctttacagcacaattgaagagatctgtga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41213818 126 + 50109623 ctatacacatatcctattggttctgtctccctagggaaccctgactaatacagatttggtgttggggaagctgagtatcatttcttctt--------------------------------------actttattctttacagcacaattgaagagatctgtga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3236887 126 + 4464012 ctatacacatatcctattggttctgtctccctagagaaccctgactaatacagatttggtgttggggaagctgagtatcattttttctt--------------------------------------actttattctttacagcacaattgaagagatctgtga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106730328 126 - 115148730 ctatacacatatcctattggttctgtctccctagagaaccctgactaatacagatttggtgttgggaaagctgagtatcatttcttctc--------------------------------------tctttattctttacagcacagttgaagagatctgtga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84349104 126 + 92844088 ctatacccatatcctactgattctgtcaccctagagacccctgactaatacagatttggtgttggggaagctgagtatcatttcttctt--------------------------------------attttattctttacagcacaattgaagagatctgtga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87695552 126 - 96509753 ctatacccatatcctactgattctgtcaccctagagacccctgactaatacagatttggtgttggggaagctgagtatcatttcttctt--------------------------------------actttattctttacagcacaattgaagagatctgtga i macFas5.chr10 C 0 C 0 s macNem1.NW_012012688v1 7192191 126 - 13098629 ctatacccatatcctactgattctgtcaccctagagacccctgactaatacagatttggtgttggggaagctgagtatcatttcttctt--------------------------------------actttattctttacagcacaattgaagagatctgtga i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4151650 126 - 4483953 ctatacccatatcctactgattctgtcaccctagagacccctgactaatacagatttggtgttggggaagctgagtatcatttcttctt--------------------------------------actttattctttacagcacaattgaagagatctgtga i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24782441 123 + 33263144 ctatacacatatcctactgattctgtcaccctagagacccctgactaatacagatttggtgttggggaagctgagt---atttcttctt--------------------------------------actttattctttacagcacaattgaagagatctgtga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14065800 126 - 14338769 ctatacccatatcctactgattctgtcaccctagagaccccggactaatacagatttggtgttggggaagctgagtatcatttcttctt--------------------------------------actttattctttacagcacaattgaagagatctgtga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1003143 126 + 1946073 ctatacacatatcctactggttctgtctccctagagacccctgactaatacagatttggtgttggggaagctgagtatcatttcttctt--------------------------------------actttattctttacagcacaattgaagagatctgtga i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8939348 126 - 16357246 ctatatacatatcctattggttctgtctccctagagaaccaagactaacacagatttggtgttgaggaagtagagtatcatttcctctt--------------------------------------actttattctttataacacaattgaagagatctgtga i saiBol1.JH378157 I 2 C 0 s cebCap1.NW_016107750v1 1425390 122 - 1807191 ctacatacatatcctattggttctgtctccctagagaaccttgactaatacagatttggtgttgaggaagtg----atcatttcttctt--------------------------------------actttattctttacaacacaattgaagagatctgtga i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 56666 126 - 704494 ctatatacatatcctatttgttctgtctccctagagaaccctgactaatacagatttggtgctgaggcagtggagtatcatttcttctt--------------------------------------acttttttctttataacacaattgaagggatctgtga i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36365009 163 - 42659167 ctatataaatatcctattggttctgtctctttggaaaaccctgactaacacagg-ttggtcctggagaaaccaagcatcgttctttcctgttctagtcatagctgggtgtggtggctcacatctgtaattctagtctttacaacacaatggaaaagatctgtga i otoGar3.GL873526 C 0 I 270 e calJac3.chrUn_GL286373 2031036 3142 - 2117846 I a score=8292350.000000 s hg38.chr22_GL383582v2_alt 159731 953 + 162811 aactcttccctcgcaaaaaggctctgataagtgtacacggctacttaatggcgaaagataaaagtttaaaagctaattatcactggtgctgcaaaagcagaa----------attgcaacggccaggcaataatcaggctttcaaatagacagtatatacttacaaaatttgtggatcacaaccactttgcaaataaaactggagcaagtgctttgaagatcgcagaagtgaaaatacaggc-aaaaaatacaagaaatctcccctgccaaattattcaatggtgtattatttctgctccttcacacatagtgccaatttgctatgc-tatatattttatcttcacatcatttctaatactggagatataaattgtgtagagacttttggagagttctaattaattctatgcattttttttttgcaaactgaactccacagaagtgcattatcacaacactgactt----catgtgtaagctctggctgtgttcatcaaaacgtagaAgccaggtgtggtggagcacctgtagtcagtcccggctactagggaggctgaggtaggaggatcac-ttgaggccaggagtttgaggctgaagtgcactatgatcatgcctgtgaatagtcactgcactccagcatgggcaacatagctagaagactatggtctc-tttaaaaaaaGTTGAAACTggccaggcacggtggctcacatctgtaatcccagcacttgtgaggccaaggcgggcagat--cacccaaggtcaggagttcgaggcca------gcctggccaatacggtgaaatcctgtctctacaaaaattaataatacaaaaattagccaggcgtggtggcggggcgcctgtaatcccagctacttggaaggctgaggcaggaaaatcgcctgaacccaggag---ac-aaaggttgcagtgagccgagaccacac-----cattgcacttcagcctcagcaacaacagtgaa s panTro5.chr22 28939275 948 + 37823149 aactcttccctcgcaaaaaggctctgataagtgtacacggctacttaatggcgaaagataaaagtttaaaagctaattatcactggtgctgcaaaagcagaa----------attgcaatggccaggcaataatcaggctttcaaatagacagtatatacttacaaaatttgtggatcacaaccactttgcaaataaaactggagcaagtgctttgaagatcgcagaagtgaaaatacaggc-aaaaaatacaagaaatctcccctgccaaattattcaatggtgtattatttctgctccttcacacatagtgccaatttgctatgc-tatatattttatcttcacatcatttctaatactggagatataaattgtgtagagacttttggagagttctaattaattctatgca-tttttttttgcaaactgaactccacagaagtgcattatcacaacactgactt----catgtgtaagctctggctgtgttcatcaaaacgtagaAgccaggtgtggtggagcacctgt----agtcccggctactagggaggctgaggtaggaggatcac-ttgaggccaggagtttgaggctgaagtgcactatgatcatgcctgtgaatagtcactgcactccagcatgggcaacatagctagaAGACTACGGTCTC-TTTtaaaaaagttgaaactggccaggcacggtggctcacatctgtaatcccagcacctgtgaggccaaggcgggcagat--cacccaaggtcaggagttcgaggcca------gcctggccaatacggtgaaatcctgtctctacaaaaattaataatacaaaaattagccaggcgtggtggcggggcgcctgtaatcccagctacttggaaggctgaggcaggaaaatcgcctgaacccaggag---ac-aaaggttgcagtgagccgagaccacac-----cactgcacttcagcctcagcaacaacagtgaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41213944 947 + 50109623 aactcttccctcgcaaaaaggctctgataagtgtacacggctacttaatggcgaaagataaaagtttaaaagctaattatcactggtgctgcaaaagcagaa----------attgcaatggccaggcaataatcaggctttcaaatagacagtatatacttacaaaatttgtggatcacaaccactttgcaaataaaactggagcaagtgctttgaagatcacagaagtgaaaatacaggc-aaaaaatacaagaaatctcccctgccaaattattcaatggtgtattatttctgctccttcacacatagtgccaatttgctatgc-tatatattttatcttcacatcatttctaatactggagatataaattgtgtagagacttttggagagttctaattaattctatgca--ttttttttgcaaactgaactccacagaagtgcattatcacaacactgactt----catgtgtaagctctggctgtgttcatcaaaacgtagaAgccaggtgtggtggagcacctgt----agtcccggctactagggaggctgaggtaggaggatcac-ttgaggccaggagtttgaggctgaagtgcactatgatcatgcctgtgaatagccactgcactccagcatgggcaacatagctagaagactacggtctc-tttaaaaaaaGTTGAAACTggccaggcacggtggctcacatctgtaatcccagcacctgtgaggccaaggcgggcagat--cacccaaggtcaggagttcgaggcca------gcctggccaatacggtgaaatcctgtctctacaaaaattaataatacaaaaattagccaggcgtggtggcggggcgcctgtaatcccagctacttggaaggctgaggcaggaaaatcgcctgaacccaggag---ac-aaaggttgcagtcagccgagaccacac-----cactgcacttcagcctcagcaacaacagtgaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3237013 942 + 4464012 aactcttccctcgcaaaaaggctctgataagtgtacacggctacttaatggcgaaagataaaagtttaaaagctaattatcactggtgctgcaaaagcagaa----------attgcaatggccaggcaataatcaggctttcaaatagacagtatatacttacaaaatttgtggatcacaaccactttgcaaataaaactggagcaagtgctttgaagatcgcagaagtgaaaatacaggc-aaaaaacacaagaaatctcccctgccaaattattcaatggtgtattatttctgctccttcacacacagtgccaatttgctatgc-tatatattttatcttcacatcatttctaatactggagatataaattgtgtagagacttttagagagttctaattaattctatgca-tttttttttgcaaactgaactccacagaagtgcattatcacaacactgactt----catgtgtaagctctggctgtgtacatcaaaacgtagaAgtcaggtgtggtggagcacctgt----agtcccggctactagggaggctgaggtaggaggatcac-ttgaggccaggagtttgaggctgaagtgcactatgatcatgcctgtgaatagtcactgcactccagcatgggcaacatagctagaagactacggtctc-tttaaaaaaaGTCGAAACTggccaggcacggtggctcacatctgtaatcccagcacctgtgaggccaaggcgggcagat--cacccaaggtcaggagttcgaggcca------gcctggccaatacggtgaaatcctgtctctac------tgaaaatacaaaaattagccaggcgtggtggcggggcgcctgtaatcccagctacttggaaggctgaggcaggaaaatcgcctgaacccaggag---ac-aaaggttgcagtgagccgagaccacac-----cattgcacttcagcctcagcaacaacagtgaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106730454 937 - 115148730 aactcttccctcgcaaaatggctctgttaagtgtacaaggctacttaacggcaaaagataaaagtttaaaagctaattatcattggtgctgcaaaagcagaa----------actgcaatggccaggcaataatcagactttcaaatagacagtatatacttataaaatttgtggatcacaaccactttgcaaataaaactgaagcaagtgttttgaagattgcagaagtgaaaatacaggc-aaaaaatacaagaaatctcccctgccaaattattcaatggtgtatgatttctgctccttcacacgtagtgccaatttgctatgc-tatatattttatcttcacatcatttctaatactggaggtataaattgtgtagagacttttagagatttctaattaattctatgc---ttttttttgcaaactgaactccacagaagtgcactatcacaacactgactt----catgtgtaagctctggctgtgtacataaaactgtggaagccaggtgtggtggagcacctgt----agtcctggctactagggaggctgaggtaggaggatcac-ttgaggccaggagtttgaggctgaagtgcactatgatcatgcctgtgaatagtcactgcactccagcatgggcaacatagct---agactacggtctg-tttaaaaaaaGTTGAAACTggccaggcacagtggctcacatctgtaatcccagcacctgtgaggccaaggcgggcagat--cacccaaggtcaggaattcgagacca------gcctagccaatacagtgaaatcctgtctctac------taaaaatacaaaaattagccaggcatggtggcggggcacctgtaatcccagctacttggaaggctaaagcaggaaaattgcctgaacccaggag---ac-aaaggttgcagtgagctgagaccgcgc-----cattgcactccagcctcggcaacaacggtgaa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84349230 932 + 92844088 aactgtttcctcgcaaaaaggctctggtaagtgtacaaagctacttaatggcgaaagataaaagtttaaaagctaattatcactggtgctgcaaaagcagaa----------attgcaatggccaggcaataatcagactttcaaatagacagtatatacttataaaatttgtggatcacaaccactttgcaaataaaactgtagcaagtgttttgaagatcgcagaagtgaaaacgcagac-aaaaaatacatgaaatctcctctgccaaattattcaatggtgtatgatttctgctccctcacatgtagtgccaattcgctatgc-----tattttatcttcacatcatttctaatactggaagtataaattgtgtagagac--ttagagagttctaattaattctatgca---tttttttgcaaactgaactccacaaaagtgcattatcataacactgactt----tgtgtgtaagcactggctgtgtacataaaaatgtggaAgccagttgtggtggagcacctgt----agtcccggctactagggaggctgaggtaggaggatcac-ttgaggccaggagtttgaggctgaagtgcactatgatcatgcctgtgaatagtcactgcactccagcatgggcaacatagct---agactacggtctc-ttcaaataaaaTTGAAACTggccaggcgtggtggctcacatctgtaaccccagcacctgtgaagccaaggtgggcagat--cacctgaggtcacgagtttgagacca------gcctggccaatatggtgaaactctgtctctac------taaaaatacaaaaattagccaggcgtggtggtggggcacctgtaatgccagctacttggaaggctgaggcaggaaaatctcctgaacccaggag---acaaaaggttgcagtgagccgagaccaggc-----cattatactccagccttggcaacaagagtgaa i rheMac8.chr10 C 0 I 278 s macFas5.chr10 87695678 931 - 96509753 aactgtttcctcgcaaaaaggctctggtaagtgtacaaagctacttaatggcgaaagataaaagtttaaaagctaattatcactggtgctgcaaaagcagaa----------attgcaatggccaggcaataatcagactttcaaatagacagtatatacttataaaatttgtggatcacaaccactttgcaaataaaactgtagcaagtgttttgaggatcgcagaagtgaaaacgcagac-aaaaaatacatgaaatctcctctgccaaattattcaatggtgtatgatttctgctccctcacatgtagtgccaattcgctatgc-----tattttatcttcacatcatttctaatactggaagtataaattgtgtagagac--ttagagagttctaattaattctatgca---tttttttgcaaactgaactccacaaaagtgcattatcataacactgactt----tgtgtgtaagcactggctgtgtacataaaaatgtggaAgccaggtgtggtggagcacctgt----agtcccggctactagggaggctgaggtaggaggatcac-ttgaggccaggagtttgaggctgaagtgcactatgatcatgcctgtgaatagtcactgcactccagcatgggcaacatagct---agactacggtctc-ttcaaataaaaTTGAAACTggccaggcgtggtggctcacatctgtaaccccagcacctgtgaagccaaggtgggcagat--cacctgaggtcacgagtttgagacca------gcctggccaatatggtgaaactctgtctctac------taaaaatacaaaaattagccaggcgtggtggtggggcacctgtaatcccagctacttggaaggctgaggcaggaaaatctcctgaacccaggag---ac-aaaggttgcagtgagccgagaccaggc-----cattatactccagccttggcaacaagagtgaa i macFas5.chr10 C 0 I 278 s macNem1.NW_012012688v1 7192317 931 - 13098629 aactgtttcctcgaaaaaaggctctggtaagtgtacaaagctacttaatggcgaaagataaaagtttaaaagctaattatcactggtgctgcaaaagcagaa----------attgcaatggccaggcaataatcagactttcaaatagacagtatatacttataaaatttgtggatcacaaccactttgcaaataaaactgtagcaagtgttttgaggatcgcagaagtgaaaacgcagac-aaaaaatacatgaaatctcctctgccaaattattcaatggtgtatgatttctgctccctcacatgtagtgccaattcgctatgc-----tattttatcttcacatcatttctaatactggaagtataaattgtgtagagac--ttagagagttctaattaattctatgca---tttttttgcaaactgaactccacaaaagtgcattatcataacactgactt----tgtgtgtaagcactggctgtgtacataaaaatgtggaAgccaggtgtggcggagcacctgt----agtcccggctactagggaggctgaggtaggaggatcac-ttgaggccaggagtttgaggctgaagtgcactatgatcatgcctgtgaatagtcactgcactccagcatgggcaacatagct---agactacggtctc-ttcaaataaaaTTGAAACTggccaggcgtggtggctcacatctgtaaccccagcacctgtgaagccaaggtgggcagat--cacctgaggtcacgagtttgagacca------gcctggccaatatggtgaaactctgtctctac------taaaaatacaaaaattagccaggcgtggtggtggggcacctgtaatcccagctacttggaaggctgaggcaggaaaatctcctgaacccaggag---ac-aaaggttgcagtgagccgagaccaggc-----cattatactccagccttggcaacaagagtgaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4151776 931 - 4483953 aactgctccctcgcaaaaaggctctgataagtgtacaaagctacttaatggcgaaagataaaagtttaaaagctaattatcactggtgctgcaaaagcagaa----------attgcaatggccaggcaataatcagactttcaaatagacagtatatacttataaaatttgtggatcacaaccactttgcaaataaaactgtagcaagtgttttgaggatcgcagaagtgaaaacgcagac-aaaaaatacatgaaatctcctctgccaaattattcaatggtgtatgatttctgctccttcacatgtagtgccaattcgctatgc-----tattttatcttcacatcatttctaatactggaagtataaattgtgtagagac--ttagagagttctaattaattctatgca---tttttttgcaaactgaactccacaaaagtacattatcataacactgactt----tgtgtgtaagcactggctgtgtACACaaaaatgtggaagccaggtgtggtggagcacctgt----agtcccggctactagggaggctgaggtaggaggatcac-ttgaggccaggagtttgaggctgaagtgaactatgatcatgcctgtgaatagtcactgcactccagcatgggcaacatagct---agactatggtctc-ttcaaataaaaTTGAAACTggccaggcgtggtggctcacatctgtaaccccagcacctgtgaagccaaggtgggcagat--cacctgaggtcacgagtttgagacca------gcctggccaatatggtgaaactcggtctctac------taaaaatacaaaaattagccaggcgtggtggtggggcacctgtaatcccagctacttggaaggctgaggcaggaaaatctcctgaacccaggag---ac-aaaggtggcagtgagccgagaccaggc-----cattatactccagccttggcaacaagagtgaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24782564 928 + 33263144 aactgttccctcgcaaaaaggctctgataagtgtacaaagctacttaatggcgaaagataaaggtttaaaagctaattatcactggtgctgcaaaagcagaa----------attgcaatggccaggcaataatcagactttcaaat----agtatacacttaaaaaatttgtggatcacaaccactttgcaaataaaactgtagcaagtgttttgaggatcgcagaagtgaaaatgcagac-aaaaaatacatgaaatctcctctgccaaattattcaatggtgtatgatttctgctccttcacatgtagtgccaattcgctatgc-----tattttgtcttcacatcatttctaatactagaagtataaattgtgtagagac--ttagagagttctaattaattctatgca--ttttttttgcaaactgaactccacaaaaatgcattatcataacactgactt----tgtgtgtaagcactggctgtgtacataaaaatgtggaagccaggtgtggtggagcacctgt----agtcctggctactagggaggctgaggtaggaggattac-ttgaggccagcagtttgaggctgaagtgcactatgatcatgcctgtgaatagtcactgcactccagcatgggcaacatagct---agactacggtctc-ttcaaataaaaTTGAAACTggccaggcgtggtggctcacatctgtaaccccagcacctgtgaagccaaggtgggcagat--cacccgaggtcacgagtttgagacca------gcctggccaatatggtgaaactctgtctctac------taaaaatacaaaaattagccaggcgtggtggtggggcacctgtaatcccagctacttggaaggctgaggcagcaaaatctcctgaacccaggag---ac-aaaggttgcagtgagccgagaccaggc-----cattatactccagccttggcaacaagagtgaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14065926 931 - 14338769 aactgctccctcgcaaaaaggctctgataagtgtacaaagctacttaatggcgaaagataaaagtttaaaagctaattatcactggtgctgcaaaagcagaa----------attgcaatggccaggcaataatcagactttcaaatagacagtatatacttacaaaatttgtggatcacaaccactttgcaaataaaactgtagcaagtgttttgaggaacgcagaagtgaaaacgcagac-aaaaaatacatgaaatctcctctgccaaattattcaatggtgtatgatttctgctccttcacatgtagtgccaattcgctatgc-----tattttatcttcacatcatttctaatactggaagtataaattgtgtagagac--ttagagagttctaattaattctatgca---tttttttgcaaactgaactccacaaaagtacattatcgtaacactgactt----tgtgtgtaagcactgGCTGTGtacataaaaatgtggaagccaggtgtggtggagcacctgt----agtcccggctactagggaggctgaggtaggaggatcac-ttgaggccaggagtttgaggctgaaatgaactatgatcatgcctgtgaatagtcactgcactccagcatgggcaacatagct---agactacggtctc-ttcaaataaaaTTGAAACTggccaggcgtggtggctcacatctgtaaccccagcacctgtgaagccaaggtgggcagat--cacctgaggtcacgagtttgagacca------gcctggccaatatggtgaaactcggtctctac------taaaaatacaaaaattagccaggcgtggtggtggggcacctgtaatcccagctacttggaaggctgaggcaggaaaatctcctgaacccaggag---ac-aaaggttgcagtgagctgagaccaggc-----cattatactccagccttggcaacaagagtgaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1003269 932 + 1946073 aactgtttcctcgcaaaaaggctctgataagtgtacaaagctacttaatggcaaaagataaaagtttaaaagctaattattactggtgctgcaaaagcagaa----------actgcaatggccaggcaataatcagactttcaaatagacagtatatacttataaaatttgtggatcacaaccactttgcaaataaaactgtagcaagtgttttgaggatcgcagaagtgaaaatgcagac-aaaaaatacatgaaatctcctctgccaaattattcaatggtgtatgatttctgctccttcacatgtagtgccaattcgctatgc-----cattttatcttcacatcatttctaatactggaagtataaattgtgtagagac--ttagagagttctaattaattctatgca--ttttttttgcaaactgaactccacaaaagtgcattatcacaacactgactt----tgtgtgtaagcactgGCTGTGtacataaaaatgtggaagccaggtgtggtggagcacctgt----agtcccggctactagggaggctgaggtaggaggatcac-ttgaggccaggagtttgaggctgaagtgcactatgatcatgcctgtgaatagtcactgcactccagcatgggcaacatagct---agactacggtctc-ttcaaataaaaTTGAAACTggccaggcgtggtggctcacgtctgtaaccccagcacctgtgaagccaaggcgggcagat--cacccgaggtcacgagttcgagacca------gcctggccaatatggtgaaactctgtctctac------taaaaatacaaaaattagccaggcgtggtggtggggcacctgtaatcccaactacttggaaggctgaggcaggaaaatctcctgaacccaggag---gc-aaaggttgcagtgacccgagaccaggc-----cattatactccagccttggcaacaagagtgaa i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8939474 907 - 16357246 aactgttccttcacaaaaaggctgtgataagtgtacaaggctacttaatggtgaaagataaaagtttcaaagctaattattactggtgctgcaaaagcagaaaactgctttcactgcaatggccaggcaataatcagattttcaaatggacagtatatacttctaaaatttgtggatcacaaccactttgcaaataaaagt---tcaagtgttttgaagatcacggaagtaaaaatgca-ac-aaaaaatgcaaataatctcccctgccaaattattcgatggtgtatgacttctgctctttcacacatggt---aatttgctatgc-tatatattttatcttcacatcatttctaatactggaggtataaattgtgtagagacttttagagagttctaattaattctatgca---ctttttggcaaactgaactccacagaagtgtattatcacaacactgactt----tgtgtgtaagcactgcctgtgtacatacaaatatggaagccaggtgtggtggagcatctgt----agtccctgctagtagggaggctgaggtaggaggatcac-ttgaggccaggagtatgaggctgaagtgcactatgaccatgccag-----------------------tggccaacatagcc---agactatcgtctcttttaaaaaaaGTTGAAACTggctgggcgtgctggctcacgcctatattcccagcactttcgaggccaaggaaggaggat--cacctgaggtcaagagttcaagacca------gcctggccaaca-ggtgaaa------tgctac------taaaaatacaaatattagctgggcatggtggt-gggcacctgtaatcccagttacttgggaggctgaggcaggagaatcatctgaacactggag---gg-ggaggttgcaatgagctgagattgcgc-----cacttcactccagcttgg---acaagaacaaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1425512 930 - 1807191 aactgttccttcacacaaaggctgtgataagtgcacaaggctacttaatggtgaaagataaaagtttaaaagctaattattattggtgctgcaaaagcagaaaactgctttcactgcaatggccaggcaataatcagactttcaaatggacagtatatacttataaaatttgtggatcacaatcactttgcaaataaaagttcctcaagtgttttgaagatcaaagaagtgaaaatgcagac-aaaaaatgcaagttatctcccctgccaaattatttgatggtgtatgacttctgctctttcacacatagtacaaatttgctatgc-tatgtattttatcttcacatcatttctaatactggaggtataaattgtgtagagacttttagagagttctaattaattctatgca---ctttttgacaaactgaactccacagaagtgcattatcacaatgctgactt----tgtgtataagcactgcctgtgtacatacaaatatggaagccaggtgtggtggagcatccac----agtccccgctagtagggaggctgaggtaggaggatcac-ttgaggccaggagtatgaggctgaagtgcactatgaccatgccagtgaatagtgactgcactctagcatggccaacatagct---agactatcgtctc-tttaaaaaaaGTTAAAACTggctgggcatggtggctcacgcctatattcccagcatttgcgaggccaaggagggagaat--cacctgaggtcaggagttcaagatca------gcctggccaaca-ggtgaaa------ctctac------taaaaatacaaatattagctgggcatggtggt-gggcacctgtaatcccagttacttgggaggctgagacaggagaatcgtctgaacgcttgag---gt-ggaggttgcaatgagctgagattgcgc-----cactgcactccagcctgg---acaaG------ i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 56792 945 - 704494 aactgttctttcacaaaaaggctgtggtaagtgtacagggctacttagtggtgaaagattaaagtttaaaagctaatcattactggtgctgcaaaagcagaaaactgctttcactgcaatggccaggcaataatcagactttcaaatgggcagtatctacttataaaattggtggatcacaaccactttgcaaataaaagttcatcaagtgttttgaagatcacagaagtgaaaatgcagacaaaaaaatccaagtaatctcccctgccaaattattcgatggtgtatgacttctgctctttcacacatagtaccaatttgctatgc-tatgtattttgtcttcacagcatttctaatacaggaggtataaattgtgcagagacttttagagagttctaattaattctatgca---ctttttggcaaactgaactccacagaagtgcattatcacaacactgactt----tgtgtgtaagcactggctgtgtacatacaaatatggaagccaggtgtggtggagcatccat----agtctctgctagtagggagactgaggtaggaggatcac-ttgaggccaggagtatgaggctgaagtgcactatgaccatgccagtgaatagtgactgcactctagcatggccaacatagct---agactatcgtctc-tttaaaaaaaGTTGAAACTggctgggcatggtggctcatgcctgtattcccagcacttgcgaggctaaggagggaggat--cacctgaggtcagcagttcaagacca------gcctggcgaata-ggtgaaa------ctctac------taaaaatacaaatattagctgggcatggtggt-gggcacccgtaatcccagttacctgggaggctgaggcaggagaatcgtctgaacgctggag---gc-ggaggttgcagtgagctgacattgcgccactgcactgcactccagcctggacaacaagaacaaa i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36365442 865 - 42659167 agtttttccctggcaagaaggctgtgataag-gtagaaagctatataatggcaaaaaataaaagtttaaaagctaactatcattggtactgcaaaagaagaaaagctctta-attgcaacagctgagcaataaccaggctttccaatggacagcatatacttagaaaacttgtacactacaaccattgtccaactacaacagccacagatgtttcaaagagcaaaacagtgataacacaggt-gaaaaatataagatacctctactgccaacttaatgaatggtgtgtgacttctgccccttcacacataatgccaattcactatgcctatctatttcaccacagcatcatttccaatactggtggtataaattgtgtaaagat--tcctagagttctaattcatttcatgca---tttttta--aaaatga---------aagcttattatcacaatgctgacttcatgcatgcataagcactgg--gcatatatgaaaacacA----------------------ctga----agtcccagctaccagagaggctaagtgggaaggaccactttgaggccaggagtttgaggct----------------------gtgaatagtcagtgcacttcagactggccaacacagtg---agacctccatctc-ttaaaaacaaa---aaaGTTGC---------Tgcttggcacctgtag-ctcagcagctagggcgcca-----gccatataacaccggaactggcaggtttgaatccagcccaggcctgcctaaca--atgaca----------ac------tgca---acaaaaaatagccaggcgtcgaggc-cagtgcctgtagtcccagctactttggaggctgaggcaagagaatcgcttaagcccaagagtttgc-tgaggttgctgtgagct---ataatgc-----tatggcactctacccaagacaatagc-ttgag i otoGar3.GL873526 I 270 C 0 e calJac3.chrUn_GL286373 2031036 3142 - 2117846 I a score=1705914.000000 s hg38.chr22_GL383582v2_alt 160684 207 + 162811 actccatctc-------aaaaaaaaaaaaaaaaaaaaaggtgaaccttc-------aatga---gatgtcctttttttata-ctgtttttgtgaaagataaaattcaacaatatctctgctcttcaggagactgcacacacag---tgatgacccatccttgtttttact--acctcatcaaaagacctagt-ttgtccatcatggtatttcagaggaccacagtt-ac-aaa s panTro5.chr22 28940223 203 + 37823149 actccatctc-------aaaaaaaaaaaaaaaaa-----gtgaaccttc-------aatga---gatgtcctttttttatatctgtttttgtgaaagataaaattcgacaatatctctgctcttcaggagactgcacatacag---tgatgacccatccttgtttttact--acctcatcaaaagacctagt-ttgtccatcatggtatttcagaggaccacagtt-ac-aaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41214891 194 + 50109623 actccatctc-------aaaaaaaaa-------------GTGAACCTTT-------AATga---gatgtcc-tttttaatatctgtttttgtgaaagataaaattcgacaatatctctgctcttcaggagactgcacatacag---tgatgacccatccttgtttttact--acctcatcaaaagacctagt-ttgtccatcatggtatttcagaggaccacagct-ac-aaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3237955 200 + 4464012 actccatctc-------aaaaaaaaaaaaaG--------GTGAACCTTC-------AATga---gatgtcctttttttatatctgtttttgtgaaagataaaattcgacaatatctctgctcttcaggagactgcacatacag---tgatgacccatccttgtttttact--atctcatcaaaagacctagt-ttgtccatcatggtatttcagaggaccacagtt-ac-aaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106731391 202 - 115148730 actccatctc-------aaaaaaaaaaaaag--------ttgaaccttc---aataaatga---gatgtcctttttctagatctgtttttgtgaaagataaaattcgacagtatctctgctcttcaagagactgcacatacag---tgatgacccatccttgtttttact--acctcatcaaaagatgtagt-ttgtccatcatggtatttcagaggaccacagtt-ac-a-- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84350440 222 + 92844088 actccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaagttgaaacttcctcagtaaacga---gatgtcctttttctatatctgcttttgtgaaagataaaattcgacaagatctctgctcttcaggctactgcacatatag---tgatgacccatcctggtttttact--acctcatcaaaagacctagt-ttgtccatcatggtatttcagaggaccacagtt-aa-aaa i rheMac8.chr10 I 278 C 0 s macFas5.chr10 87696887 222 - 96509753 actccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaagttgaaacttcctcagtaaacga---gatgtcctttttctatatctgcttttgtgaaagataaaattcgacaagatctctgctcttcaggctactgcacatatag---tgatgacccatcctggtttttact--acctcatcaaaagacctagt-ttgtccatcatggtatttcagaggaccacagtt-aa-aaa i macFas5.chr10 I 278 C 0 s macNem1.NW_012012688v1 7193248 214 - 13098629 actccgtctc---------aaaaaaaaaaaaaaaaaaagttgaaacttcctcagtaaacga---gatgtcctttttctatatctgcttttgtgaaagataaaattcgacaagatctctgctcttcaggctactgcacatatag---tgatgacccatcctggtttttact--acctcatcaaaaaacctagt-ttgtccatcatggtatttcagaggaccacagttaaa-aaa i macNem1.NW_012012688v1 C 0 C 0 s cerAty1.NW_011999588v1 4152707 215 - 4483953 actccgtctc-------aaaaaaaaaaaaaaaaaaaaagttgaaacttcctcagtaaacga---gatgtcctttttctatacctgcttttgtgaaagataaaattcgacaagatctctgctcttcaggctactgcacatatag---tgatgacccatcctggtttttact--acctcatcaaaagacctagt-ttgtccatcatggtatttcagaggaccacagtt-aa-aaa i cerAty1.NW_011999588v1 C 0 C 0 s chlSab2.chr19 24783492 211 + 33263144 actccgtctc-----------aaaaaaaaaaaaaaaaagttgaaacttcctcagtaaacga---gacgtcctttttctatatctgcttttgtgaaagataaaattcgacaagatctctgctcttcaggctactgcacatatag---tgatgacccatcctggtttttact--acctcatcaaaagacccagt-ttgtccatcatggtatttcagaggaccacagtt-aa-aaa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14066857 215 - 14338769 actccgtctc-------aaaaaaaaaaaaaaaaaaaaagttgaaacttcctcagtaaacga---gatgtcctttttctatacctgcttttgtgaaagataaaattcgacaagatctctgctcttcaggctactgcacatatag---tgatgacccatcctggtttttact--acctcatcaaaagacctagt-ttgtccatcatggtatttcagaggaccacagtt-aa-aaa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1004201 209 + 1946073 actccgtctg-------------aaaaaaaaaaaaaaagttgaaacttcctcagtaaacaa---gatgtcctttttctatatctgcttttgtgaaagataaaattcgacaagatctctgctcttcaggcgactgcacatatag---tgatgacccatcctggtttttact--acctcatcaaaagacctagt-ttgtccatcatagtatttcagaggatcacagtt-aa-aaa i colAng1.NW_012115588v1 C 0 C 0 s saiBol1.JH378157 8940381 221 - 16357246 actcaatcta--aaaaaaaaaagaaagaaagaaaaaaagctgaaacttcctcaataaatga---gatgtcctttttctacatctgcatttgtgaaagataaaattcgacaacatctctgctcctgaggcaactacacatgcag---tgatgacccatcctggtttttacc-gacctcatcaaaagacctagt-ttgtccatcatggtatttcagaggaccacagtt-ac-aaa i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1426442 174 - 1807191 ----------------------------------------------------aataaatga---gatgtcctttttcaacatctgcatttgtgaaagataaaattcgacaacatgtctgctcttgaggcgactacacatgcagtgatgatgacccatcctggtttttact-gacctcatcaaaagacctagt-ttgtccatcatggtatttcagaggaccacagtt-aa-aaa i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 57737 222 - 704494 actcaatctc--aaaaaaaaaaaaaaaaaaaaaaaaaagctgaaacttcctcaataaatga---aatgtcctttttctacatctgcatttgtgaaagataaaattcgacaacatctttgctcttgaggcgactacacatgcag---taatgacccatcctggtttttact-gacctcatcaaaagacctagt-ttgtccatcatggtatttcagacgaccacagtt-acaaaa i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36366307 211 - 42659167 actgtgtctc-----------cataaaaaaaaaaaaaagttgaaatttcctcaataaatgaagtaatgtctgttttgcacatctgcatttgtgaaagataaagtttgtcgag-tctctgcttcctggacgactgtatatgcag---tggtgacccattctagtttttaacagagctcatcaaaagtcttaacattatcca-----gtgtgtcaaatgatcacagtt-at-aga i otoGar3.GL873526 C 0 I 237 e calJac3.chrUn_GL286373 2031036 3142 - 2117846 I a score=5790283.000000 s hg38.chr22_GL383582v2_alt 160891 718 + 162811 atgtaacacccatgcaactacggttagtatactgagtgattaaacttgcaaaatacatttgttactattt-tattgtgtaaagtggtgtactaggctgttcctgcattgctatgaaggaat---------------acttaaaagaaaagagatttaattggcttacagttctgcaggctgtacaggaggcatagtggcacctgcttccaggaaggcctcaggaagcttccaatcatggcagaaggcaaagggggaacaggcacatcacatgatgaggactgagca--agagagagtgtgaggtgccacactt-ttaaaacagccagatctcgcgagaagtcgctcaccgtctcgaggacagcatcaaggggatggtactaaaccattcatgaaaaatccacccacataatccaatcacctcctaccagcctccacttccaatattggggattacaattcaacatgagatttgggcagggacacatatccaaactatattaagtggcctatgaagtgttgtcatgtttttgtttctcaaataaatcccctttaaaaaaggtaaataagtggttt----ttctgt-----ttg----------tttattgaagacaaagtcttgctctgttgcccagacagcgccatcacagctcactccaacctctgcctcccagacccaagagatcctccca-cctcagtctcccaagtagctggactataggtgcacgctagcttgctaatttttg----------ta-----ttttttt s panTro5.chr22 28940426 718 + 37823149 atgtaacacccatgcaactacggttagtatactgagtgattaaacttgcaaaatacatttgttactattt-tattgtgtaaagtggtgtactaggctgttcctgcattgctataaaggaat---------------acttaaatgaaaagagatttaattggcttacagttctgcaggctgtacaggaggcatagtggcacctgcttccaggaaggcctcaggaagcttccaatcatggcagaaggcaaagggggaacaggcacatcacatgatgaggactgagca--agagagagtgtgaggtcccacactt-ttaaaacagccagatctcacgagaagtcgctcactgtctcgaggacagcatcaaggggatggtactaaaccattcatgaaaaatccacccacataatccaatcacctcctaccagcctccacttccaatattggggattacaattcaacctgagatttgggcagggacacatatccaaactatattaagtggcctatgaagtgttgtcctgtttttgtttctcaaataaatcccctttaaaaaatgtaaataagtggttt----ttctgt-----ttg----------tttattgaagacaaagtcttgctctgttgcccagacagcgccatcacagctcactccaacctctgcctcccagacccaagagatcctccca-cctcagtctcccaagtagctggactataggtgcacgctagctggctaatttttg----------ta-----ttttttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41215085 718 + 50109623 atgtaacacccatgcaactacggttagtatactgagtgattaaacttgcaaaatacatttgttactattt-tattgtgtaaagtggtgtactaggctgttcctgcattgctataaaggaat---------------acttaaatgaaaagagatttaattggcttacagttctgcaggctgtacaggaggcatagtggcacctgcttccagtaaggcctcaggaagcttccaatcatggcagaaggcaaagggggaacaggcacatcacatgatgaggactgagca--agacagagtgtgaggtgccacactt-ttaaaacagccagatctcacgagaagtcgctcactgtctcgaggacagcatcaaggggatggtactaaaccattcatgaaaaatccacccacataatccaatcacctcctaccagcctccacttccaatattggggattacaattcaacctgagatttgggcagggacacatatccaaactatattaagtggcctatgaagtgttgtcctgtttttgtttctcaaataaatcccctttaaaaaacgtaaataagtggttt----ttctgt-----ttg----------tttattgaagacaaagtcttgctctgttgcccagacagcgccatcacagctcactccaacctctgcctcccagacccaagagatcctccca-cctcagtctcccaagtagctggactataggtgcacgctagcttgctaatttttg----------ta-----ttttttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3238155 717 + 4464012 atgtaacacccatgcaactacggttagtatactgagtgattaaacttgcaaaatacatttgttactattt-tattgtgtaaagtggtgtactaggctgttcctgcattgctataaaggaat---------------acttacaagaaaagagatttaattggcttacagttctgcaggctgtacaggaggcatagtggcatctgcttccaggaaggcctcaggaagcttccaatcatggcagaaggcaaagggggaacaggcacatcacaggatgaggactgagca--agagagagtgtgaggtgccacactt-ttaaaacagcca-atctcgcgagaagttgctcactgtctcgaggacagcatcaaggggatggtactaaaccattcatgaaaaatccacccacataatccaatcacctcctaccagcctccacttccaatattggggattacaattcaacatgagatttgggcagggacacatatccaaactatattaagtggcctatgaagtgttgtcatgtttttgtttctcaaataaatcccctttaaaaaacgtaagtaagtggttt----ttctgt-----ttg----------tttattgaagacaaagtctagctctgttgcccagacagcgccatcacagctcactccaacctctgcctcccagacccaagagatcctccca-cctcagtctcccaagtagctggactataggtgcaggctagcttgctaatttttg----------ta-----ttttttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106731593 721 - 115148730 ---taacacccatgcaactacggttagtatactgagtgattaaacttgcaaaatacatttgttactattt-tatcgtgtaaagtggtgtactaggctgttcctgcatcgctataaaggaat---------------acttacaagaaaagagatttaattggcttacagttctgcaggctgtacaggaggcacagtggcatctgcttccaggaaggcctcaggaagcttccaatcatggcagaaggcaaagggagaacaggcacatcacatgatgaggacggagca--agagaga--gtgaggtgccacactt-tt-aaacagccagatctcgcgagaagtcgctcgctgtctcaaggacagaatcaaggggatgatactaaaccattcatgaaaaatccacccacataatccaatcacctcctaccagcctccacttccaatattggggattacaattcaacatgagatttgggcagggacacatatccaaactatattaagtggcctatgaagtgttgccat-tttttgttcctcaaataaatcccctttaaaaaatgtaaataagtggttt----ttttgttgttgttg----------tttattgaagacaaagtcttgctctgttgcccaggcagcaccttcacagctcactacaacctccgcctcccagacccaagagatcctccca-cctcagtctcccaagtagctggactataggtgcatgctagcttgctaatttttg----------tatttttttttttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84350662 716 + 92844088 atgtaacacccatgcaactgttgttagtataccgagtcagtaaacttgcaaaatacatttgttactattt-catt----------gtgtactaggccattcctgcattgctataaaggaat---------------acttagaagaaaagagatttaattgtcttacagttctgcaggctgtacaggaggcatagtggtacctgcttcta-gaaggcctcaggaagcttccaatcatggcagaaggcaaagggggaacaggcatatcacatgatgaggacggagca--agagagagtgtgaggtgccacactt-tt-aaacagccagatctcgccagaagtggctcactgtctcaaggacagcatcaaggggatggtactaaaccattcatgaaaaatccacccacataatccaatcaccttctaccagcctccacttccaatattggggattacaattcaacatgagatttgggcagggaaacatatccaaactatattaagtggcctatgaagtgttgtcatgtttttgtttctcaaataaatccccctt-aaaaatgtaaataagtgtttt----gtctgt-----tttt------tgttttcttgaagacaaagtcttgctctgttgcctaggcaacgttatcacagctcacttcaacttctgcctcccagacccaagagatcctccca-cctcagtctcacaattaactggactacaggtgcatgctaccttgctaattttggggttttt---tt-----tttttgt i rheMac8.chr10 C 0 I 11 s macFas5.chr10 87697109 716 - 96509753 ATGTAGCacccatgcaactgttgttagtatactgagtcagtaaacttgcaaaatacatttgttactattt-catt----------gtgtactaggccattcctgcattgctacaaaggaat---------------acttagaagaaaagagatttaattgtcttacagttctgcaggctgtacaggaggcatagtggtacctgcttcta-gaaggcctcaggaagcttccaatcatggcagaaggcaaagggggaacaggcatatcacatgatgaggacggagca--agagagagtgtgaggtgccacactt-tt-aaacagccagatctcgccagaagtggctcactgtctcaaggacagcatcaaggggatggtactaaaccattcatgaaaaatccacccacataatccaatcaccttctaccagcctccacttccaatattggggattacaattcaacatgagatttgggcagggaaacatatccaaactatattaagtggcctatgaagtgttgtcatgtttttgtttctcaaataaatccccctt-aaaaatgtaaataagtgtttt----gtctgt-----tttt------tgttttcttgaagacaaagtcttgctctgttgcctaggcaatgttatcacagctcacttcaacttctgcctcccagacccaagagatcctccca-cctcagtctcacaagtaactcgactacaggtgcatgctaccttgctaattttggggggttt---tt-----tttttgt i macFas5.chr10 C 0 I 9 s macNem1.NW_012012688v1 7193462 701 - 13098629 atgtaacacccatgcaactgttgttagtatactgagtcagtaaacttgcaaaatacatttgttactattt-catt----------gtgtactaggccattactgcattgctataaaggaat---------------acttagaagaaaagagatttaattgtcttacagttctgcaggctgtacagaaggcatagtggtacctgcttcta-gaaggcctcaggaagcttccaatcatggcagaaggcaaagggggaacaggcatatcacatgatgaggacggagca--agagagagtgtgaggtgccacactt-tt-aaacagccagatctcgccagaagtggctcactgtctcaaggacagcatcaaggggatggtactaaaccattcatgaaaaatccacccacataatccaatcaccttctaccagcctccacttccaatattggggattacaattcaacatgagatttgggcagggaaacatatccaaactatattaagtggcctatgaagtgttgtcatgtttttgtttctcaaataaatccccctt-aaaaatgtaaataagtgtttt----gtctgt-----tttt------tgttttcttgaagacaaagtcttgctctgttgcctaggcaacgttatcacagctcacttcaacttctgcctcccagacccaagagatcctccca-cctcagtctcacaagtaactggactacaggtgcatgctaccTTGCTAA-----------------------ttttttt i macNem1.NW_012012688v1 C 0 N 0 s cerAty1.NW_011999588v1 4152922 717 - 4483953 atgtaacacccatgcaactgttgttagtatactgagtgagtaaacttgcaaaatacatttgttactattt-catt----------gtgtactaggccattcctgcattgctataaaggaat---------------acttagaagaaaagagatttaattgtcttacagttctgcaggctgtacaggaggcatagtggtacctgcttctaggaaggcctcaggaagcttccaatcatggcagaaggcaaagggggaacaggcatatcacatgatgaggacggagca--agagagagtgtgaggtgtcacactt-tt-aaacagccagatctcgccagaagtggctcactgtctcaaggacagcatcaaggggatggtactaaaccattcatgaaaaatccacccacataatccaatcaccttccaccagcctccacttccaatactggggattacaattcaacatgagatttgggcagggaaacatatccaaactatattaagtggcctatggagtgttgtcatgtttttgtttctcaaataaatccccctt-aaaaatgtaaataagtgtttt----gtctgt-----tttt------tgttttcttgaagacaaagtcttgctctgttgcctaggcaacattatcacagctcacttcaacttctgcctcccagacccaagagatcctccca-cctcagtctcacaagtaactggactacaggtacatgctaccttgctaatttttgtgggttt---tt-----ttttttt i cerAty1.NW_011999588v1 C 0 I 10 s chlSab2.chr19 24783703 698 + 33263144 atgtaacacccatgcaactgttgttagtatactgagtgagtaaacttgcaaaatacatttgttactattt-catt----------gtgtactaggccattcctgcattgctataaaggaat---------------acttagaagaaaagagatttaattgtcttacagttctgcaggctgtacaggaggcatagtggtacctgcttctaggaaggcctcaggaagcttacaatcatggcagaaggcaaagggggaacaggcatatcacatgatgaggatggagca----agagagtgtgaggtgccacactt-tt-aaacagccagatctcgccagaagtggctcactgtctcaaggacagcatcaaggggatggcactaaaccattcatgaaaaatccacccacataatccaatcaccttctaccagcctccacttccaatattggggattacaattcaacatgagatttgggcagggaaacatatccaaactatattaagtggcctatgaagtgttgtcatgtttttgtttctcaaataaatccccctt-aaaaatgtaaataagtgtttt----gtctgt-----tttt------tgctttcttgaagacaaagtcttgctctgttgcctaggcaacgttatcacagctcacttcaacttctgcctcccagacccaagagatcctccca-cctcagtctcacaagtaactggacta----------ctatcttgctaatgtttg----------ca-----ttttttt i chlSab2.chr19 C 0 I 9 s manLeu1.NW_012102031v1 14067072 720 - 14338769 atgtaacacccatgcaactgttgttagtatactgagtgagtaaacttgcaaaatacatttgttactattt-catt----------gtgtactaggccattcctgcattgctataaaggaat---------------acttagaagaaaagagatttaattgtcttacagttctgcaggctgtacaggaggcatagtggtacctgcttctaggaaggcctcaggaagcttccaatcatggcagaaggcaaagggggaacaggcatatcacatgatgaggacggagca--agagagagtgtgaggtgccacactt-tt-aaacagccagatctcgccagaagtggctcactgtctcaagcacagcatcaaggggatggtactaaaccattcatgaaaaatccacccacataatccaatcaccttctaccagcctccacttccaatattggggattacaattcaacatgagatttgggcagggaaacatatccaaactatattaagtggcctataaagtgttgtcatgtttttgtttctcaaataaatccccctt-aaaaatgtaaataagtgtttt----gtctgt-----tttt------tgttttcttgaagacaaagtcttgctctgctgcctaggcaacattatcacagctcacttcaacttctgcctcccagacccaagagatcctccca-cctcagtctcacgagtaactggactacaggtgcatgctaccttgctaatttttgtgggtttttttg-----ttgtttt i manLeu1.NW_012102031v1 C 0 I 9 s colAng1.NW_012115588v1 1004410 711 + 1946073 ATCTAacacccatgcaactgttgttagtatactgagtgagtaaacttgcaaaatacatttgttactattg-catt----------gtgtactaggccattcctgcattgctataaaggaat---------------acctggaacaaaagagatttaattgtcttacagttctgcaggctgtacaggaggcatagtggtatctgcttctaggaaggcctcaggaggcttccaatcatggcagaaggcaaagggggtacaggtataccacatgatgaggacggagca--agagagagtgtgaggtgccacactt-tt-aaacagccagatctcgccagaagtggctcactgtctcgaggacagcatcaaggggatggtactaaaccattcatgaaaaattcacccacataatccaatcacctcctaccagcctccacttccaatattggggattacaattcaacatgagatttgggcagggaaacatatccaaactatattaagtggcctatgaagtgttgtcatg-ttttgtttctcaaataaatccccctt-aaaaatgtaaataagtgtttttttggtttgt-----tttt------tgttttcttgacgac--agtcttgctctgttgtctaggcaacgttatcacagctcactccaacctctgcctcccagacccaagagatcctccca-cctcagtctcccaagtaactggactacaggtgcatgctaccttgctaatttttg----------tt-----gtttttt i colAng1.NW_012115588v1 C 0 I 13 s saiBol1.JH378157 8940602 737 - 16357246 atgttacacccatgcaactgttgttagaatactgagtgattatacttgcaaaacacatttgttactatttcaattgtataaagtggtatactagaccattcctgcattgttataaaggaatacctgagactgagtaacttacaagaaaagagatttaattggctcacagctctgcaggctgtaaaggaagcatagcagcatctgcttccaggaaggcctcaggaagcttccaaccatgacagaagacaaagggggtacagacatatcacataataaggacggagca--agagagagtgcgaggtgccagacat-tt-aaacagccagatctcaccagaagtcgctcaccatcttgaggacagcatcaa-gggatgctactaaaccattcacaaaaaatccacccccgtaattcaattacatcctaccagcctccacttccagtattggggattacaattcaacagtagatttcggcagggacacatatccaaactacattaagtggcctatgaagtgttgtcgtgtttttgtttctcaaataaatgtcctttaaaaaatt----taagtgtctt----ttcttt-----ttctttctttttttttttttgagacaaagtcttgttctgttgcccaggcagcaccatcacagttcactgcaacctccatctcccagactcaagagatcttctca-cctcagcctcccaagtaactggactacaggtgcatgctaccttgcttatttttg----------ta-----tttttt- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1426616 730 - 1807191 atgttacacccatgcaactgttgttagaatactgagtgattacacttgcaaaatacatttgttactattt-aattgtataaagtggtatactaggccattcctgcactgttataaaggaatacctgagactgagtaacttacaagaaaagggatttaattggctcacagctctgcaggctgtaaaggaagcatagccgcatctgcttctaggagggcctcaggaagcttccaatcatggcagaaggcaaagcgggtac------accacgtaatgaggacggagcaagagagagagtgcgaggtgccagacat-tt-aaacagccagatcttgccagaagtcgctcaccatcttgaggacagcatcaa-gggatggtactaaaccattcacaaaaaatccacccccataattcaattacatcctaccagcctccacttccaatattggggattacaattcaacagtagattttggcagggacacatatccaaactatattaagtgacctatgaagtgttgtcgtgtttttgtttctcaaataaatgtcctttaaaaaatttaagtaagtgtctt----ttcttt-----ttc-------tttttttttaaagacgaagtcttgctctgttgcccaggcagcgccatcacagttcactgcaacctccacctcccagactcaagagatcctctca-cctcagcctcccaagtagctggactacaggtgcatgctaccttgcttatttttg----------tat----tttttt- i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 57959 733 - 704494 atgttacacccacacaactgttgttagaatactgagtgattacacttgcaaaatacatttgttactattt-cattgtataaagtggtatactaggccattcctgcattgctataaaggaatacctgagactgagtaacttaaaaaacaagagatttaattggctcacaggtctgcaggctgtaaaggaatcatagcggcatctgcttctaggaaggcctcaggaagcttccaatcatggcagaaggcaaagggggtacagacacaacacgtaatgaggacagagcaagagagagagtgcgagatgccacacatata-aaacagccagatgtcgccagaagtcgctcaccatcttgaggacagcatcaa-gggatggtactaaaccattcacgaaaaatccacccccataattcaattacatcctaccagcctccacttccaattgtgaggattacaattcaacagtagatttgggcagggacacatatccaaactatattaagtggcctatgaagtgttgtcatgtttttgtttctcaaataaatgtcctttaaaaaatttaagtaagtgtctt----ttttt----------------tttttttttaaagacaaagtcttgctctgttgcccaggcagccccatcacagttcactgcaacctccacctcccagactcaagagatcatctcaccctcagcctcccaagtagctggactacaggtgcacactaccttgctaatttttg----------ta-----tttttt- i aotNan1.NW_018512389v1 C 0 C 0 e otoGar3.GL873526 36366518 237 - 42659167 I e calJac3.chrUn_GL286373 2031036 3142 - 2117846 I a score=3923458.000000 s hg38.chr22_GL383582v2_alt 161609 574 + 162811 gtagagacagggtttctccacgttgcccaggctgatcttgaactcctgggctcaagcaatctgcccaccttggcttcccaaaatactgagattacaggtgtgagactctgtacctggccaaacaagtgtcttttttttttttttttttttttttttttttgagacagaatctcactctgtcacccaggttggagtac--agtggcat-gatctcagctcactgcaacctccgcctcccatgttcaagtgattctcgtgcctcagcatcccgagtagcggggactacaggcacttgcaaccatgcctagataatttttatatttttagtagagacggggttttgccatgttggccaggctggtctcaaactcctga-gctcaagtgatctgcccacctaggcctctcaacatgct-gggattacaggag-tgagccaccgcacctggcccaaataagtattttttaaataatgttttaa--aattattttttccagaattatattgtttggatttcgatattttgggatttcagtatttgggattatggcatcaagaactgtgtctttTAggccaggcgcagt s panTro5.chr22 28941144 562 + 37823149 gtagagacagggtttctccacgttgcccaggctgatcttgaactcctgggctcaagcaatctgcccaccttggcttcccaaaatactgagattacaggtgtgagactctgtacctggccaaacaagtgtc-----------ttttttttttttttttttggagacagaatctcactctgtcacccaggttggagtac--agtggcat-gatctcagctcactgcaacctccgcctcccatgttcaagtgactctcgtgcctcagcatcccgagtagcggggactacaggcacatgcaaccatgcctagataatttttgtatttttagtagagacggggttttgccatgttggccaggctggtctcaaactcctga-gctcaagtgatctgcccacctaggcctctcaacatgct-gggattacaggag-tgagccaccgcacctggcccaaataagtattttttaaataatgttttaa--aatt-ttttttccagaattatattgtttggattttgatattttgggatttcagtatttgggattatggcatcaagaactgtgtctttTAggccaggcgcagt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41215803 565 + 50109623 gtagagacagggtttctccacgttgcccaggctgatcttgaactcctgggctcaagcaatctgcccaccttggcttcccaaaatactgagattacaggtgtgagactctgtacctggccaaacaagtgtc----------tttttttttttttttttttggagacagaatctcactctgtcacccaggttggagtac--agtggcat-gatctcagctcactgcaacctccgcctcccatgttcaagtgattctcgtgcctcagcatcccgagtagcggggactacaggcacatgcaaccatgcctagataatttttgtatttttagtagagacggggttttgccatgttggccaggctggtctcaaactcctgaggctcaagtgatctgcccacctaggcctctcaacatgct-gggattacaggag-tgagccaccgcacctggcccaaataagtattttttaaataatgttttaa--aattattttttccagaattatattgtttggattttgatattttgggatttcagtatttgggattatggcatcaagaactgtgtctttTAggccaggcgcagt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3238872 570 + 4464012 gtagagacagggtttctccacgttgcccaggctgatcttgaactcctgggctcaagcaatctgcccaccttggcttcccaaaatactgagattacaggtgtgagactctgtacctggccaaacaagtgtc----ttttttttttttttttttttttttttgagacagaatctcgctctgtcacccaggttggagcac--agtggcat-gatcccagctcactgcaacctccgcctcccatgttcaagtgattctcgtgcctcagcatcccgagtagcggggactacaggcacatgcaaccatgcctagataatttttgtatttttagtagagacggggttttgccatgttggccaggctggtctcaaactcctga-gctcaagtgatctgcccacctaggcctctcaacatgct-gggattacaggag-tgagccactgcacctggcccaaataagtattttttaaataatgttttaa--aattattttttccagaattatattgtttggatttcgatattttgggatttcagtatttgggattatggcatcaagaactgtgtctttTAggccaggcgcagt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106732314 567 - 115148730 gtagagacggggtttctccacgttgcccaggctgatcttgaactcctgggctcaagcaatctgcccaccttggcttctcaaaatactgagattacaggtatgagaccctgtacctggccAAACAAGtttg----ttttttttttttttttttttttttttgagacagaatctccctctgtcacccaggttggagtacagagtggcat-gatctcagctcactgcaacctccgcctcccatgttcaagtgattcttgtgcctcagcatcctgagtagcggggactatgggcacatgcaactatgcctggctaatttttgtatttttagtagagacagggttttgccatgttggccaggctggcctcaaactcctga-gctcaagtgatctgcccacctaggcctctcaacgtgct-gcgattacagggg-tgagccaccgcacctggcccaaataagaatcctttaaatatttttttaa--aattattttttccaga---atattttttggatttcgatattttgggatttcagtatttgggattatggcctcaagaac--tgtcttctaggccaggcgcagt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84351389 570 + 92844088 gtagagacagggtttctccatgttgcccaggctgatcttgaactcctgggctcaagcaatctgcccacctttgcttctcaaaatactgagattacaggtgtgagaccctgtacctggccaaacaaatgtc-------tttttttttttttttttttttttgagacagaatctcactctgtcacccaggctggagtac--agtggcatagatctcagttcactgcaacctctgcctcccatgttcaagtgattctcgcgcctcagcctcccgagtagtggggactacaggcacatgcaaccatgcctggctaatttttgtatttttagtagaaacggggttttgacatgttggccaggctggtatcaaacttctaa-cctcaagtgatctgcccacctaggctgcccaaagtgctggggattacaggtg-taagccaccatacctggcccaaataagtgtcttttaaataattttttttt-aattattttttccagaattacattttttggattttggtattttgagatttcagtatttgggattatggcatcaagaactgtgtctttTAggccaggcacagt i rheMac8.chr10 I 11 C 0 s macFas5.chr10 87697834 570 - 96509753 gtagagacagggtttctccatgttgcccaggctgatcttgaactcctgggctcaagcaatctgcccacctttgcttctcaaaatactgagattacaggtgtgagaccctgtacctggccAAACAAATGtt-------tttttttttttttttttttttttgagacagaatctcactctgtcacccaggctggagtac--agtggcatagatctcagttcactgcaacctctgcctcccatgttcaagtgattctcgcgcctcagcctcccaagtagtggggactacaggcacatgcaaccatgcctggctaatttttgtatttttagtagaaacggggttttgacatgttggccaggctggtctcaaacttctaa-cctcaagtgatctgcccacctaggccgcccaaagtgctggggattacaggtg-taagccaccatacctggcccaaataagtgtcttttaaataatttttttta-aattattttttccagaattacattttttggattttggtattttgagatttcagtatttgggattatggcatcaagaactgtgtcttttaggccaggcacagt i macFas5.chr10 I 9 C 0 s cerAty1.NW_011999588v1 4153649 567 - 4483953 gtagagacagggtttctccatgttgcccaggctgatcttgaactcctgggctcaagcaatctgcccacctttgcttcccaaaatactgagattacaggtgtgagaccctgtacctggccAAACAAGt-tc-------cttttttttttttttttttttttgagacagaatctca--ctgtcacccaggctggagtac--agtggcatagatctcagttcactgcaacctctgcctcccatgttcaagtgattctcgtgcctcagcctcccgagtagtggggactacaggcacatgcaaccatgcctggctaatttttgtatttttagtagaaacggggttttgacatgttggccaggctggtctcaaacttctaa-cctcaagtgatctgcccacctaggccgcccaaagtgctggggattacaggtg-tgagccaccgtacctggcccaaataagtgtcttttaaataattttttttt-aattattttttccagaattacattttttggattttggtattttgagatttcagtatttgggattatggcatcaagaactgtgtctttTAggccaggcgcagt i cerAty1.NW_011999588v1 I 10 C 0 s chlSab2.chr19 24784410 560 + 33263144 gtagagacagggtttctccatgttgcccaggctgatcttgaactcctgggctcaagcaatctgcccacctttgcttcccaaaatactgagattacaggtgtgagaccctgtacctggccAAACAAGGGtc----------------ttttttttttttttgagacagaatctca--ctgtcacccaggctggagtac--agtggcatagatctcagttcactgcaacctctgcctcccatgttcaagtgattctcgtgcctcagcctcccgagtagtggggactacaggcacatgcaaccatgcctggctaatttttgtatttttagtagaaacggggttttgacatgttggccaggctggtctcaaacttccaa-cctcaagtgatctgcccacctaggccgcccaaagtgctggggattacaagtg-tgagccaccgtacctggcccaaataagtgtcttttaaataatttttttttaaattattttttccagaattacattttttggattttggtattttgagatttcagtatttgggattacggcatcaagaactgtgtcttttaggccagacgcagt i chlSab2.chr19 I 9 C 0 s manLeu1.NW_012102031v1 14067801 564 - 14338769 gtagagacagggtttctccatgttgcccaggctgatcttgaactcctgggctcaagctatctgcccacctttgcttcccaaaatactgagattacaggtgtgagaccctgtacctggccAAACAAGTGtc-----------tttttttttttttttttttgagacagaatctca--ctgtcacccaggctggagtac--agtggcatagatctcagttcactgcaacctctgcctcccatgttcaactgattctcgtgcctcagcctcccgagtagtggggactacaggcacatgcaaccatgcctgactaatttttgtatttttagtagaaacggggttttgacatgttggccaggctggtctcaaacttctaa-cctcaagtgatctgcccacctaggccgcccaaagtgctggggattacaggtg-tgagccaccgtacctggcccaaataagtgtcttttaaataattttttttt-aattattttttccagaattacattttttggattttggtattttgagatttcagtatttgggattatggcatcaagaactgtgtctttTAggccaggcgcagt i manLeu1.NW_012102031v1 I 9 C 0 s colAng1.NW_012115588v1 1005134 554 + 1946073 gtagagacagggtttctccatgttgcccaggctgatcttgaactcctgggctcaagcaatctgcccacctttgcttcccaaaatacagagattacaggtgtgagaccctgtacctggccAAACAAGTGtc-------------------tttttttttttgagacagaatctcactctgtcacccaggctggagtac--agtggcatagacctcagttcactgcaacctctgcctcccatgttcaagtgattctcgtgcctcagcctcccgagtagtggggactacaggcacatgcaaccatgcctggttagtttttgtatttttagtagaaacggtgttttgacatgttggccaggctggtctcaaacttctaa-cctcaagtgatctgcccacctaggccgcccaaagtgct-cggattacaggtg-tgagccacggcacctggcccaaataagtgtcttttaaataatttttt----gattattttttccagaattacattttttggattttgatattttgagatttcagtatttgggattatggcatcaagaactgtgtctttTAggccaggcgcagt i colAng1.NW_012115588v1 I 13 C 0 s saiBol1.JH378157 8941339 538 - 16357246 gtagagacagggtttcaccatgttgcccaggctgatcttgaactcctgtgctcaagcaatctgcccatcttgacctcccaaaatactgagattacaggtgtgaaaccctgtgtctggcctaacaagtgtc----------------------ttttttgtgagacagtatcttgctctgtcgcccaggctggagtaa--agt----------tctgctcactgcaactcccacctcccacattcaagcaaatctcccacctcagcctcctaagtagcggggactacaggcataggccacaatgcccggctaatttttgtatttttagtagagatggggttttgccatgctggccaggctggtctcacactcttga-cctca----atctgcccacctaggcctcctaaagtgct-gggattacaggtg-tgagtcac-acgcctggcccaaataagtgtcttttaaataactttttaa--gattattttttccagaattgtatttttaggattttgatcttttgggatttcagcatttgggattatggaatcaagaactatgtctttcAggccaagcacaga i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1427346 539 - 1807191 gtagagacagggtttcaccatgttgcccaggctgaccttgaactcctgggctcaagcaatttgcccatcttggcctcccaaaatactgagattacaggtgtgaaaccctgtgtctggccaaacaagcgtc----------------------ttttttgtgagacagaatcttgctctgtcacccaggctaaagtaa--agt----------tctgctcactataacctccacctcctacattcaagcaaatctcccacctcagcctcccaagtagaggggactacaggcataggccacaatgcccggctaatttttatatttttagtagagatggggttttgccatgttggccaggctggtctcaaactcttga-cctca----atctgcccacctaggcctcccaaagtgcc-gggattacaggtgttgagtcac-gcacctggcccagataaatgtcttttaaataaatttttaa--gattattttttccagaattgtatttttaggattttgatcttttggcatttcagcatgtggaattatggcatcaagaactatgcctttcaggccgagcacaga i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 58692 536 - 704494 gtagagacagggtttcaccatgttgcccagactgatcttgaactcctgggctcaagcaatctgcccattttggcctcccaaaatactgagattacaggtgtgaaaccctgtgcctggcctaacaagtgtc----------------------ccttttgtgaaacagaatcttg--ctgtcgcccaggctggagtaa--agt----------tctgctcactgcaacctccacctcccacattcaagcaaatctcccacctcagccttccaagtagcggggactacaggcataggtcacaatgcctggctaatttttgtatttttagtagagatggggttttgccatgttggccaggctggtctcaaattcctga-cctca----atctgcccacctaggcctcccaaagtgct-gggattacaggtg-tgagtcac-gcacctggcccaaataagtgtcttttaaataattttttaa--gatcattttttccagaattatatttttaggattttgatcttttggtatttcagcatttgggattatggcatcaagaactgtgtctttcAggccgagcccaga i aotNan1.NW_018512389v1 C 0 C 0 e otoGar3.GL873526 36366518 237 - 42659167 I e calJac3.chrUn_GL286373 2031036 3142 - 2117846 I a score=41210.000000 s hg38.chr22_GL383582v2_alt 162183 5 + 162811 ggctc s panTro5.chr22 28941706 5 + 37823149 ggctc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41216368 5 + 50109623 ggctc i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3239442 4 + 4464012 gg-tc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106732881 5 - 115148730 ggctc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84351959 5 + 92844088 ggctc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87698404 5 - 96509753 ggctc i macFas5.chr10 C 0 C 0 s cerAty1.NW_011999588v1 4154216 5 - 4483953 ggctc i cerAty1.NW_011999588v1 C 0 N 0 s chlSab2.chr19 24784970 5 + 33263144 ggctc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14068365 5 - 14338769 ggctc i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1005688 5 + 1946073 ggctc i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2034178 5 - 2117846 ggctc i calJac3.chrUn_GL286373 I 3142 C 0 s saiBol1.JH378157 8941877 5 - 16357246 ggctc i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1427885 5 - 1807191 ggctc i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 59228 5 - 704494 gggtc i aotNan1.NW_018512389v1 C 0 C 0 e otoGar3.GL873526 36366518 237 - 42659167 I a score=260705.000000 s hg38.chr22_GL383582v2_alt 162188 32 + 162811 atgcctgtaatcccagcacttcgggaggctga s panTro5.chr22 28941711 32 + 37823149 atgcctgtaatcccagcacttcgggaggctga i panTro5.chr22 C 0 C 0 s panPan2.chr22 41216373 32 + 50109623 atgcctgtaatcccagcacttcgggaggctga i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3239446 32 + 4464012 atgtctgtaatcccagcacttcgggaggctga i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106732886 32 - 115148730 atgcctgtaatcccagcacttcgggaggctga i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84351964 32 + 92844088 atgcctgtaatcccagcacttcgggaggctga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87698409 32 - 96509753 atgcctgtaatcccagcacttcgggaggctga i macFas5.chr10 C 0 C 0 s chlSab2.chr19 24784975 32 + 33263144 gtgcctgtaatcccagcacttcgggaggctga i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14068370 32 - 14338769 gtgcctgtaatcccagcacttcgggaggctga i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1005693 32 + 1946073 atgcctgtaatgccagcacttcgggaagctga i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2034183 32 - 2117846 atgcctgtaatcccagcactttgggaggctga i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8941882 32 - 16357246 atgcctttaatcccagcactttgggaggctga i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1427890 32 - 1807191 atgcctgtaatcccagcactttgggaggctga i cebCap1.NW_016107750v1 C 0 I 9 s aotNan1.NW_018512389v1 59233 32 - 704494 atgcctgtaatcccagcactttggaaggctga i aotNan1.NW_018512389v1 C 0 C 0 e otoGar3.GL873526 36366518 237 - 42659167 I a score=64522.000000 s hg38.chr22_GL383582v2_alt 162220 74 + 162811 ggtgggcagatcacctgaggtcgggagtttgagaccagcctggccaacgtggcaaaacccTgccaaggtgggca s panTro5.chr22 28941743 74 + 37823149 ggtgggcagatcacctgaggtcaggagtttgagaccagcctggccaacgtggcaaaaccctgccaaggtgggca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41216405 74 + 50109623 ggtgggcagatcacctgaggtcaggagtttgagaccagcctggccaacgtggcaaaaccctgccaaggtgggca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3239478 74 + 4464012 ggtgggcagatcacctgaggtcaggagtttgagaccagcctggccaacgtggcgaaacccTgccaaggtgggca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106732918 59 - 115148730 ggtggggagatcacctgaggtcaggagtttgagaccagcctggccaacatggcgaaacc--------------- i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84351996 29 + 92844088 ggtgggcagatcacctgaggtcaggagtt--------------------------------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87698441 29 - 96509753 ggtgggcagatcacctgaggtcaggagtt--------------------------------------------- i macFas5.chr10 C 0 C 0 s chlSab2.chr19 24785007 29 + 33263144 ggtgggcagatcacctgaggtcaggagtt--------------------------------------------- i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14068402 29 - 14338769 ggtgggcagatcacctgaggtcaggagtt--------------------------------------------- i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1005725 29 + 1946073 gatgggcagatcacctgaggtcaggagtt--------------------------------------------- i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2034215 8 - 2117846 --t-----------------gtggggg----------------------------------------------- i calJac3.chrUn_GL286373 C 0 I 1 s saiBol1.JH378157 8941914 19 - 16357246 --ctgaca------cggggggtggggg----------------------------------------------- i saiBol1.JH378157 C 0 I 3 s aotNan1.NW_018512389v1 59265 8 - 704494 -------------------cgcggggg----------------------------------------------- i aotNan1.NW_018512389v1 C 0 I 1 e otoGar3.GL873526 36366518 237 - 42659167 I e cebCap1.NW_016107750v1 1427922 9 - 1807191 I a score=242709.000000 s hg38.chr22_GL383582v2_alt 162294 79 + 162811 gatcacctgaggtcaggagttcaagaccagcctgggcaacatggcgaaactctgtctctacctgtatttttttttgtaa s panTro5.chr22 28941817 78 + 37823149 gatcacctgaggtcaggagttcaagaccagcctgggcaacatggcgaaactctgtctctacctgta-ttttttttgtaa i panTro5.chr22 C 0 C 0 s panPan2.chr22 41216479 77 + 50109623 gatcacctgaggtcaggagttcaagatcagcctgggcaacatggcgaaactctgtctccacctgta--tttttttgtaa i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3239552 75 + 4464012 gatcacccgaggtcaggagttcaagaccagcctgggcaacatggcgaaa--ctgtctcta-ctgta-ttttttttgtaa i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106732977 13 - 115148730 ---------------------------------------------------ctgtctctac---------------taa i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84352025 43 + 92844088 ---------------------caagaccagcctggccaacatggcgaaaccctgtctctac---------------taa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87698470 43 - 96509753 ---------------------caagaccagcctggccaacatggcgaaaccctgtctctac---------------taa i macFas5.chr10 C 0 C 0 s chlSab2.chr19 24785036 43 + 33263144 ---------------------caagaccagcctggccaacatggcgaaaccctgtctctac---------------taa i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14068431 43 - 14338769 ---------------------caagaccagcctggccaacatggcgaaaccctgtctctac---------------taa i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1005754 43 + 1946073 ---------------------caagaccagcctggccaacatggcaaaaccctgtctctac---------------taa i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2034224 63 - 2117846 -atcacctgaggtcaggagttagggaccagcctggccaacatggggaaaccccgtctctac---------------taa i calJac3.chrUn_GL286373 I 1 C 0 s saiBol1.JH378157 8941936 64 - 16357246 aatcacctgaggtcaggagtttgagaccagcctggccaacatggggaaacgccgtctctac---------------taa i saiBol1.JH378157 I 3 C 0 s cebCap1.NW_016107750v1 1427931 64 - 1807191 gatcatctgaggtcaggagtttgagaccagcctggacaacatggggaaaccctgtctctac---------------taa i cebCap1.NW_016107750v1 I 9 C 0 s aotNan1.NW_018512389v1 59274 64 - 704494 gatcacctgaggtcaggagtttgagaacagcctggccaacatgaagaaaccctgtctctac---------------taa i aotNan1.NW_018512389v1 I 1 C 0 e otoGar3.GL873526 36366518 237 - 42659167 I a score=882962.000000 s hg38.chr22_GL383582v2_alt 162373 112 + 162811 aaatac-aa--aaaaattagccgggtgtggtggcacgcacctataatcccag---ctacttgggaggctcaggcaggagaatcacttgaacccaagagacagaggttgcagtgagccg s panTro5.chr22 28941895 112 + 37823149 aaatac-aa--aagaattagccaggtgtggtggcacgcacctataatcccag---ctacttgggaggctcgggcaggagaatcacttgaacccaagagacagaggttgcagtgagccg i panTro5.chr22 C 0 C 0 s panPan2.chr22 41216556 114 + 50109623 aaatac-aa--aa-aattagccaggtgtggtggcacgcacctataatcccagctactacttgggaggctcaggcaggagaatcacttgaacccaagagacagaggttgcagtgagccg i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3239627 112 + 4464012 aaatac-aa--aaaaattagccgggtgtggtggcacgcacctataatcccag---ctacttgggaggctcaggcaggagaatcacttgaacccaagagacagaggttgcagtgagccg i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106732990 112 - 115148730 aaatac-aa--aaaaattagccgggtgtggtggcacgcacctataatcccag---ctacttggtaggctcaggcaggagaatcacttgaacccaagagatggaggttgcagtgagccg i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84352068 113 + 92844088 aaatacaaa--aaaaaatagccacgtgtggtggcacgcacctataatcccag---ctactcaggaggctcaggcaggagaatcgcttgaacccaagagacggaggttgcagtgagccg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87698513 112 - 96509753 aaatac-aa--aaaaaatagccacgtgtggtggcacgcacctataatcccag---ctactcaggaggctcaggcaggagaatcgcttgaacccaagagacggaggttgcagtgagccg i macFas5.chr10 C 0 C 0 s chlSab2.chr19 24785079 112 + 33263144 aaatac-aa--aaaaaatagccatgtgtggtggcacgcacctataatctcag---ctactcaggaggctcaggcaggagaatcgcttgaacccgagagacggaggttgcagtgagccg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14068474 112 - 14338769 aaatac-aa--aaaaaatagccacgtgtggtggcacgcacctataatcccag---ctactcaggaggctcaggcaggagaatcgcttgaacccaagagacggaggttgcagggagccg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1005797 113 + 1946073 aaatacaaa--aaaaaatagctgcgtgtgggggcacgcacctataatcccag---ctactcaggaggctcaggcaggagaatcgcttgaacccaagagacggaggttgcagtgagccg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2034287 113 - 2117846 aaatacaaa--aaaaattagccaggcatggtggcacacacatgtaattccag---ctactagggaggctgaggtaggagaatcgcttgaatctgagagacagaggttgcagtgagcca i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8942000 112 - 16357246 aaatac-aa--aaaaattagccaggcatggtggcacacacatgtaattccag---ctactagggaggctgaggcaggagaatcgcttgaatctgagagacagaggttgcagtgagcca i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1427995 112 - 1807191 aaatac-aa--aaaaattagccaggcatagtggcacacacatgtaattccag---ctactagggaggctgaggcaggagaatcgcttgaatccgagagacagaggttgcagtgagcca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 59338 112 - 704494 aaatac-aa--aaaaattagccaggcatggtggcacacacatgtaattccag---ctactagggaggctgaggtaggagaatcgcttgaatctgagagacagaggttgcagtgagtca i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36366755 113 - 42659167 aactac-aaccaaaaaatagccaggcattgtggtgggtgcctgtagtcccag---ctacttgggaggctgagacaagagaatcacttaagccc-agagtttgaggttgctgtgagtta i otoGar3.GL873526 I 237 I 96 a score=274039.000000 s hg38.chr22_GL383582v2_alt 162485 42 + 162811 a----gcaccactgcactccagcctgggcgacagaacgaaagtcca s panTro5.chr22 28942007 46 + 37823149 agatcgcaccactgcactccagcctgggcgacagaacgaaagtcca i panTro5.chr22 C 0 C 0 s panPan2.chr22 41216670 46 + 50109623 agatcgcaccactgcactccagcctgggcgacagaacgaaagtcca i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3239739 45 + 4464012 agatcacaccactgcactccagcct-ggcgacagaacgaaagtcca i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106733102 46 - 115148730 agatcgcaccactgcactccagcctgggcaacagagcgaaagtcca i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84352181 46 + 92844088 agatcgcaccactgcactccagcctgggcaacagggcgaaagtctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87698625 46 - 96509753 agatcgcaccactgcactccagcctgggcaacagggcgaaagtctg i macFas5.chr10 C 0 C 0 s chlSab2.chr19 24785191 46 + 33263144 agatcgcaccactgcactccagcctgggcaacagggcgaaagtctg i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14068586 46 - 14338769 agatcgcaccactgcactccagcctgggcaacagggcgaaagtctg i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1005910 46 + 1946073 agatcgcaccactgcactccagcctgggcaacacagcgaaagtctg i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2034400 42 - 2117846 caatcacaccactgcactccaacctgggcgac----aggaactccg i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8942112 32 - 16357246 caatcacaccactgcactccaacctgggtgac-------------- i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1428107 46 - 1807191 cgatcataccactgcactccaacctgggtgacagagaggaactcca i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 59450 46 - 704494 cgatcacaccactgcactccaacctgggtgacagagaggaactccg i aotNan1.NW_018512389v1 C 0 C 0 e otoGar3.GL873526 36366868 96 - 42659167 I a score=964008.000000 s hg38.chr22_GL383582v2_alt 162527 154 + 162811 tctcaaaaaaa---------aaaagaaaaaaat-------aaaaaa------------------------------------aaGAACTGTCTCTTTCAGAATTATGGCCTAAACCCGTCTG-AAACAACTATTCAAGAAGTCTTTGGGAGAGCTAACACCTACAAACATAAACTTTGGTAATATTTTATAAAATATTC-TTAAAAAT s panTro5.chr22 28942053 152 + 37823149 tctcaaaaaaa---------aaaagaaaaaa---------aaaaaa------------------------------------aagaaCTGTCTCTTTCAGAATTATGGCCTAAACCCATCTG-AAACAACTATTCAAGAAGTCTTTGGGAGAGCTAACACCTACAAACATAAACTTCGGTAATATTTTATAAAATATTC-TTAAAAAT i panTro5.chr22 C 0 C 0 s panPan2.chr22 41216716 149 + 50109623 tctcaaaaaaa---------aaagaaaa------------aaaaaa------------------------------------aagaaCTGTCTCTTTCAGAATTATGGCCTAAACCCGTCTG-AAACAACTATTCAAGAAGTCTTTGGGAGAGCTAACACCTACAAACATAAACTTCGGTAATATTTTATAAAATATTC-TTAAAAAT i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3239784 137 + 4464012 tctcaaaa--------------------------------aaaaaa------------------------------------aagaaCTGTCT-TTTCAGAATTATGGCCTAAACCCGTCTG-AAACAACTATTCAAGAAGTCTTTGGGAGAGCTAACACCTACAAACATAAACTTCGGTAATATTTTATAAAATATTC-TTAAAAAT i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106733148 161 - 115148730 tctcaaaaaaa---------aaaagaaagaaagaaagaaaaaaaaa------------------------------------aagaactgtctctttcagaattatggcctaaacccATCTG-AAACAAATATTCAAGAAGTCTTTGGGAGAGCTAACATCTACAAACATAAACTTGGGTAATATTTTATAAAATATTC-TTAAAAAT i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84352227 154 + 92844088 tctcaaaaaaa---------gaaaaaagaaaa-g------aaaaaa------------------------------------aaGAACTGTTTATTTCAGAACTATGGCCTATACCCATCTG-AAACAAATATTCAAGAAATCTTTGGGAGAGCTAACATCTACAAACATAAACTTGGGTAATATTTTATAAAACACTC-TTAAAAGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87698671 155 - 96509753 tctcaaaaaaa---------gaaaaaagaaaagg------aaaaaa------------------------------------aaGAACTGTTTATTTCAGAACTATGGCCTATACCCATCTG-AAACAAATATTCAAGAAACCTTTGGGAGAGCTAACATCTACAAACATAAACTTGGGTAATATTTTATAAAACAGTC-TTAAAAGT i macFas5.chr10 C 0 C 0 s chlSab2.chr19 24785237 155 + 33263144 tctcaaaaaaa---------gaaaaaagaaaagg------aaaaaa------------------------------------aaGAACTGTTTATTTCAGAACGATGGCCTATACCCATCTG-AAACAAATATTCAAGAAACCTTTGGGAGAGCTAACATCTACAAACATAAACTTGGGTAATATTTTATAACACAGTC-TTAAAAGT i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14068632 154 - 14338769 tctc-aaaaaa---------gaaaaaagaaaagg------aaaaaa------------------------------------aagaACTGTTTATTTCAGAACTATGGCCTATACCCATCTG-AAACAAATATTCAAGAAACCTTTGGGAGAGCTAACATCTACAAACATAAACTTGGGTAATATTTTATAAAACAGTC-TTAAAAGT i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1005956 155 + 1946073 tctcaaaaaaa---------gaaaaaagaaaagg------aaaaaa------------------------------------aaGAACTGTTTCTTTCAGAACTATGGCCTATACCCATCTG-AAACAAATATTCAAGAAACCTTTGGGAGAGCTAATATCTACAAACATAAACTTGGGTAATATTTTATAAAACAGTC-TTAAAAGT i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2034442 141 - 2117846 tctcaa----a---------aaa-----------------aaaaaa------------------------------------aGCAACTTTGTCTTTCAGAATTATGGCCTAAATCCATCTA-AAACAAACACTCAAGGAATCTTTGGGAGAGCTAACTTCTACAAACATAAACTTGGGAAATACTTTATAAAATAGTCTTTAAAAAT i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8942144 125 - 16357246 ----------------------------------------------------------------------------------agCAACTTTGTCTTTCAGAATTATAGCCTAAATCCATCTG-AAACAAACACTCAAGAAATCTTTGGGAGAGCTAACATCTACAAACATACACTTGGGAAATACTTTATAAAATAGTCTTTAAAAAT i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1428153 145 - 1807191 tctcaaaacga---------aac-----------------aaaaaa------------------------------------agcaactttgtctttcagaattatggcctaaatccATCTG-AAACAAACACTCAAGAAATCTTTGGGAGAGCTAACATCTACAAACATAAACTTGGGAAATACTTTATAAAATAGTCTTTAAAAAT i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 59496 141 - 704494 tctcaa----a---------aaa-----------------aaaaaa------------------------------------GGCAACTTTGTCTTTCAGAATTATGGCCTAAATCCATCTG-AAACAAACACTCAAGAAATCTTTGGGAGAGCTAACATCTACAAACATAAACTTGGGAAATACTTTATAAAATAGTCTTTAAAAAT i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36366964 200 - 42659167 tctcaaataaatcatcttttaaaaatgcaaacag------atgaaatgtttttggtatttgtgtattagtgattatggcctcagggattgtgtctttcaggattatggccccaaacTATCTGAAAACGGATATTCAAGAAGATTCTGGGAGATGTACCACCTATGAACAGAAACCTGGG-AACACATTTTAATACGGCA-TTAAGAAT i otoGar3.GL873526 I 96 I 311 a score=284164.000000 s hg38.chr22_GL383582v2_alt 162681 31 + 162811 CACCTTTATCCACACACAAGACAGTTTTAAA s panTro5.chr22 28942205 31 + 37823149 CACCTTTATCCACACACAAGACAGTTTTAAA i panTro5.chr22 C 0 C 0 s panPan2.chr22 41216865 31 + 50109623 CACCTTTATCCACACACAAGACAGTTTTAAA i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3239921 31 + 4464012 CACCTTTATCCACACACAAGACAGTTTTAAA i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106733309 31 - 115148730 CACCTTTATCCACACACAAGACAGTTTTAAA i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84352381 31 + 92844088 CACCTTTATCCACACACAAGACAGTTTTAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87698826 31 - 96509753 CACCTTTATCCACACACAAGACAGTTTTAAA i macFas5.chr10 C 0 C 0 s chlSab2.chr19 24785392 31 + 33263144 TACCTTTATCCACACACAAGACAGTTTTAAA i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14068786 31 - 14338769 CACCTTTATCCACACACAAGACAGTTTTAAA i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1006111 31 + 1946073 CACCTTTATCCACACACAAGATAGTTTTAAA i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2034583 31 - 2117846 CACCTTTATCCACACATAAGACAGTTTTAAA i calJac3.chrUn_GL286373 C 0 C 0 s saiBol1.JH378157 8942269 31 - 16357246 CACCTTTATCCATGCATAAGACAGTTTTAAA i saiBol1.JH378157 C 0 C 0 s cebCap1.NW_016107750v1 1428298 31 - 1807191 CACCTTCATCCACACATAAGACAGTTTTAAA i cebCap1.NW_016107750v1 C 0 C 0 s aotNan1.NW_018512389v1 59637 31 - 704494 CACCTTTATCCACAAACAAGACAGTTTTAAA i aotNan1.NW_018512389v1 C 0 C 0 s otoGar3.GL873526 36367475 31 - 42659167 CACCTTTATCCACACATAAGACAGATCTAAA i otoGar3.GL873526 I 311 N 0 a score=48152.000000 s hg38.chr22_GL383582v2_alt 162712 6 + 162811 AGCttt s panTro5.chr22 28942236 6 + 37823149 AGCttt i panTro5.chr22 C 0 C 0 s panPan2.chr22 41216896 6 + 50109623 AGCttt i panPan2.chr22 C 0 C 0 s gorGor5.CYUI01015375v1 3239952 6 + 4464012 AGCttt i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106733340 6 - 115148730 AGCttt i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84352412 6 + 92844088 AGCttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 87698857 6 - 96509753 AGCttt i macFas5.chr10 C 0 C 0 s chlSab2.chr19 24785423 6 + 33263144 AGCttc i chlSab2.chr19 C 0 C 0 s manLeu1.NW_012102031v1 14068817 6 - 14338769 AGCttt i manLeu1.NW_012102031v1 C 0 C 0 s colAng1.NW_012115588v1 1006142 6 + 1946073 AGCttt i colAng1.NW_012115588v1 C 0 C 0 s calJac3.chrUn_GL286373 2034614 6 - 2117846 AGCTCT i calJac3.chrUn_GL286373 C 0 N 0 s saiBol1.JH378157 8942300 6 - 16357246 AGCttt i saiBol1.JH378157 C 0 N 0 s cebCap1.NW_016107750v1 1428329 6 - 1807191 AGCTTT i cebCap1.NW_016107750v1 C 0 N 0 s aotNan1.NW_018512389v1 59668 6 - 704494 AGCTTT i aotNan1.NW_018512389v1 C 0 N 0 a score=366145.000000 s hg38.chr22_GL383582v2_alt 162718 92 + 162811 ggagactgagtccagctctgtcgccaggctggagtgcagtggcac-atctcgactcactgcaacctccacctcccaggtttaagcgattctcc s panTro5.chr22 28942242 93 + 37823149 ggagactgagtccagctctgtcgccaggctggagtgcagtggcacgatctcgactcactgcaacctccacctcccaggtttaagtgattctcc i panTro5.chr22 C 0 C 0 s panPan2.chr22 41216902 93 + 50109623 ggagactgagtccagctctgtcgctaggctggaatgcagtggcacgatctcgactcactgcaacctccacctcccaggtttaagcgattctcc i panPan2.chr22 C 0 N 0 s gorGor5.CYUI01015375v1 3239958 93 + 4464012 ggagactgagtccagctctgtcgccaggctggagtgcagtggcacgatctcgactcactgcaacctccacctcccaggtttaagcgattctcc i gorGor5.CYUI01015375v1 C 0 C 0 s nomLeu3.chr7b 106733346 93 - 115148730 ggagagtgagtccggctctgtcgccaggctggagtacagtggcacaatcttgactcactgcaacctccacctcccaggtttaagcgattctcc i nomLeu3.chr7b C 0 C 0 s rheMac8.chr10 84352418 93 + 92844088 tgagactgagttcagctctgtcgccaggctggagtgcggcggcacgatctcgactcactgcaacctccaactcccaggtttaagtgattctcc i rheMac8.chr10 C 0 N 0 s macFas5.chr10 87698863 93 - 96509753 tgagactgagttcagctctgtcgccaggctggagtgcggcggcacgatctcgactcactgcaacctccaactcccaggtttaagtgattctcc i macFas5.chr10 C 0 N 0 s chlSab2.chr19 24785429 93 + 33263144 tgagactgagttcagctctgtcgccaggctggagtgcagcggcacgatctcgactcactgcaacctccaactcccaggtttaagtgattctcc i chlSab2.chr19 C 0 N 0 s manLeu1.NW_012102031v1 14068823 93 - 14338769 tgagactgagttcagctctgtcgccaggctggagtgcagcggcacgatctcgactcactgcaacctccaactcccaggtttaagtgattctcc i manLeu1.NW_012102031v1 C 0 N 0 s colAng1.NW_012115588v1 1006148 93 + 1946073 tgagactgagttcagctctgtcgccaggctggagtgcagcggcacaatctcgactcactgcaacctccaactcccaggtttaagcgattctcc i colAng1.NW_012115588v1 C 0 N 0 a score=600.000000 s hg38.chr22_GL383582v2_alt 162810 1 + 162811 C s panTro5.chr22 28942335 1 + 37823149 c i panTro5.chr22 C 0 N 0 s gorGor5.CYUI01015375v1 3240051 1 + 4464012 c i gorGor5.CYUI01015375v1 C 0 N 0 s nomLeu3.chr7b 106733439 1 - 115148730 c i nomLeu3.chr7b C 0 N 0