##maf version=1 scoring=roast.v3.3 a score=169548.000000 s hg38.chr2_KI270769v1_alt 0 22 + 120616 GCACTTTCTTTCAAACCCTCTG s panTro5.chr2A 3437375 22 + 111504155 GCACTTTCTTTCAAACCCTCTG i panTro5.chr2A N 0 C 0 s panPan2.chr2A 3324153 22 + 114371477 GCACTTTCTTTCAAACCCTCTG i panPan2.chr2A N 0 C 0 s gorGor5.CYUI01015435v1 197512 22 + 637652 GCACTTTCTTTCAAACCCTCTG i gorGor5.CYUI01015435v1 N 0 C 0 s nomLeu3.chr19 2997206 22 + 81552678 GCACTTTCTTTCAAACCCTCTG i nomLeu3.chr19 N 0 C 0 s rheMac8.chr13 3255080 22 + 108979918 GCACTGTCTTTCAAACCCTCTG i rheMac8.chr13 N 0 C 0 s macFas5.chr13 4968313 22 - 111193037 GCACTGTCTTTCAAACCCTCTG i macFas5.chr13 N 0 C 0 s macNem1.NW_012011978v1 3362542 22 + 3644372 GCACTGTCTTTCAAACCCTCTG i macNem1.NW_012011978v1 N 0 C 0 s cerAty1.NW_012000820v1 3316232 22 - 10304083 GCACTGTCTTTCAAACCCTCTG i cerAty1.NW_012000820v1 N 0 C 0 s chlSab2.chr14 3400516 22 - 107702431 GCACTGTCTTTCAAACCCTCTG i chlSab2.chr14 N 0 C 0 s manLeu1.NW_012104432v1 920970 22 + 1565135 GCACTGTCTTTCAAACCCTCTG i manLeu1.NW_012104432v1 N 0 C 0 s colAng1.NW_012118821v1 3306877 22 - 13651311 GCACTTTCTTTCAAACCCTCTG i colAng1.NW_012118821v1 N 0 I 1 s calJac3.chr14 3391915 22 - 108792865 GCACTTCCTTGTAAACCCCCTG i calJac3.chr14 N 0 C 0 s aotNan1.NW_018507213v1 1870093 22 - 1938448 GCACTTTCTTGCAAACCCCCTG i aotNan1.NW_018507213v1 N 0 C 0 a score=13437.000000 s hg38.chr2_KI270769v1_alt 22 8 + 120616 TTGCTTGC s panTro5.chr2A 3437397 8 + 111504155 TTGCTTGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3324175 8 + 114371477 TTGCTTGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 197534 8 + 637652 TTGCTTGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2997228 8 + 81552678 TTGCTTGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3255102 5 + 108979918 ATGCT--- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4968335 5 - 111193037 ATGCT--- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3362564 5 + 3644372 ATGCT--- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3316254 5 - 10304083 ATGCT--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3400538 5 - 107702431 ATGCT--- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 920992 5 + 1565135 ATGCT--- i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3391937 8 - 108792865 TTGCTTGC i calJac3.chr14 C 0 C 0 s aotNan1.NW_018507213v1 1870115 8 - 1938448 TTGCTTGC i aotNan1.NW_018507213v1 C 0 C 0 e colAng1.NW_012118821v1 3306899 1 - 13651311 I a score=2865.000000 s hg38.chr2_KI270769v1_alt 30 2 + 120616 CT s panTro5.chr2A 3437405 2 + 111504155 CT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3324183 2 + 114371477 CT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 197542 2 + 637652 CT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2997236 2 + 81552678 CT i nomLeu3.chr19 C 0 C 0 s cebCap1.NW_016107454v1 541006 2 + 5243153 CT i cebCap1.NW_016107454v1 N 0 C 0 e aotNan1.NW_018507213v1 1870123 0 - 1938448 C e calJac3.chr14 3391945 0 - 108792865 C e colAng1.NW_012118821v1 3306899 1 - 13651311 I e manLeu1.NW_012104432v1 920997 0 + 1565135 C e chlSab2.chr14 3400543 0 - 107702431 C e cerAty1.NW_012000820v1 3316259 0 - 10304083 C e macNem1.NW_012011978v1 3362569 0 + 3644372 C e macFas5.chr13 4968340 0 - 111193037 C e rheMac8.chr13 3255107 0 + 108979918 C a score=1804138.000000 s hg38.chr2_KI270769v1_alt 32 211 + 120616 TGCCGTTTGCTTCTCCCTCTGACTGTAACTCAGAGGAAATCTGAAGGTTGCCACAGGAAAGACTTAACCTATTGCTTCCCAACTGGGTGCTGCAGTCCAACGGTCTTAGGTACATTTGGAAAGGGGGAGAGGTGTTTCACTTTGGTTGACAAAAGGGCTGGGGTGAGCATATGACATTTAGTGAGTAGGGCTAAGAGTACTCAGTACCTTG s panTro5.chr2A 3437407 211 + 111504155 TGCCGTTTGCTTCTCCCTCTGACTGTAACTCCGAGGAAATCTGAAGGTTGCCACAGGAAAGACTTAACCTATTGCTTCCCAACTGGGTGCTGCAGTCCAACGGTCTTAGGTACATTTGGAAAGGGGCAGAGGTGTTTCACTTTGGTTGACAAAAGGGCTGGGGTGAGCATATGACATTTAGTGAGTAGGGCTAAGAGTACTCAGTACCTTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3324185 211 + 114371477 TGCCGTTTGCTTCTCCCTCTGACTGTAACTCAGAGGAAATCTGAAGGTTGCCACAGGAAAGACTTAACCTATTGCTTCCCAACTGGGTGCTGCAGTCCAACGGTCTTAGGTACATTTGGAAAGGGGCAGAGGTGTTTCACTTTGGTTGACAAAAGGGCTGGGGTGAGCATATGACATTTAGTGAGTAGGGCTAAGAGTACTCAGTACCTTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 197544 211 + 637652 TGCCATTTGCTTCTCCCTCTGACTGTAACTCAGAGGAAATCTGAAGGTTGCCACAGGAAAGACTTAACCTTTTGCTTCCCAACTGGGTGCTGCAGTCCAAGGGTCTTAGGTACATTTGGAAAGGGGCAGAGGTGTTTCACTTTGGTTGACAAAAGGGCTGGGGTGAGCATATGACATTTAGTGAGTAGAGCTAAGAGTACTCAGTACCTTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2997238 211 + 81552678 TGCCGTTTGCTTCTCCCTCTGACTGTAACTCAGAGGAAATCTGAAGGCTGCCACAGGAAAGACTTAATCTATTGCTTCCCAACTGGGTGCTGGAGTCCAAGGGTCTTAGGTACATTTGGAAAGGGGCAGAGGTGTTTCACTTTGGTTGACAAAAGGGCTGGGGTGAGCATATGACACTTAGTGAGTAGGGCTAAGAGTACTCAGTACCTTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3255107 211 + 108979918 CGCCGTTTCCTTCTCCCTCTGACTGTAACTCAGAGGAAATCTGAAGGCTGCCACAGGAAAGACTTAACCTATTGCTTCCGAACTGGGTGCTGGAGTCCAAGGGTCTTAGGTACATTTGGAAATGGGCAGGGGTGTTTCACTTTGGTTGACAAAAGGGCTGGGGTGAGCATATGACATTTTGTGAGTAGGGCTAAGAGTACTGAATACCTTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4968340 211 - 111193037 CGCCGTTTCCTTCTCCCTCTGACTGTAACTCAGAGGAAATCTGAAGGCTGCCACAGGAAAGACTTAACCTATTGCTTCCGAACTGGGTGCTGGAGTCCAAGGGTCTTAGGTACATTTGGAAATGGGCAGAGGTGTTTCACTTTGGTTGACAAAAGGGCTGGGGTGAGCATATGACATTTTGTGAGTAGGGCTAAGAGTACTGAATACCTTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3362569 211 + 3644372 CGCCGTTTCCTTCTCCCTCTGACTGTAACTCAGAGGAAATCTGAAGGCTGCCACAGGAAAGACTTAACCTATTGCTTCCGAACTGGGTGCTGGAGTCCAAGGGTCTTAGGTACATTTGGAAATGGGCAGAGGTGTTTCACTTTGGTTGACAAAAGGGCTGGGGTGAGCATATGACATTTTGTGAGTAGGGCTAAGAGTACTGAATACCTTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3316259 211 - 10304083 CGCCGTTTCCTTCTCCCTCTGACTGTAACTCAGAGGAAATCTGAAGACTGCCACAGGAAAGACTTAACCTATTGCTTCCGAACTGGGTGCTGGAGTCCAAGGGTCTTAGGTACATTTGGAAATGGGCAGAGGTGTTTCACTTTGGTTGACAAAAGGGCTGGGGTGAGCATATGACATTTCGTGAGTAGGGCTAAGAGTACTGAATACCTTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3400543 211 - 107702431 TGCCATTTCCTTCTCCCTCTGACTGTAACTCAGAAGAAATCTGAAGGCTGCCACAGGAAAGACTTAACCTATTGCTTCCGAACTGGGTGCTGGAGTCCAAGGGTCTTAGGTACATTTGGAAATGGGCAGAGGTGTTTCACTTTGGTTGACAAAAGGGCTGGGGTGAGCATATGACATGTCGTGAGTAGGGCTAAGAGTACTGAATACCTTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 920997 211 + 1565135 CGCCGTTTCCTTCTCCCTCTGACTGTAACTCAGAGGAAATCTGAAGGCTGCCACAGGAAAGACTTAACCTATTGCTTCCGAACTGGGTGCTGGAGCCCAAGGGTCTTAGGTACATTTGGAAATGGGCAGAGGTGTTTCACTTTGGTTGACAGAAGGGCTAGGGTGAGCATATGACATTTTGTGAGTAGGGCTAAGAGTACTGAATACCTTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3306900 211 - 13651311 TGCCATTTCCTTCTCCCTCTGACTGTAACTCAGAGGAAATCTGAAGGCTGCCACAGGAAAGACTTAACCTATTGCTTCCGAACTGGGTGCTGGAGTCCAAGGGTCTTAGGTACATTTAGAAATGGGCAGAGGTGTTTCACTTTGGTTGACAAAAGGGCTGGGGTGAGCATATGACATTTAGTGAGTAGGGCTAAGAGTACTAAATACCTTG i colAng1.NW_012118821v1 I 1 C 0 s calJac3.chr14 3391945 208 - 108792865 ---TGTTTGCTTCTCCCTCTGACTGTAACTCACGGGAAATCTGAAGGCTGCCACAAGAAAGACTTAACCCATTGTTTCCCAACTGGGTGCTGGGATCCAGGGGTCTTAGGTGCATTTGGAGATATGCAGAGGTGTTTTACTTTGGTTGACAAAGGGGATGGGGTGCACATATGATGTTGAGTGGGTGGGGCCAAGAGTACTGAAAGCCTTG i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 541008 211 + 5243153 TGCTGTTTGCTTCTCCCTCTGACTGTAACTCAGAGGAAATCTGAAGGCTGCCACAAGAAAGACTTAACCCATTGTTTCCCAACTGGGTGCTGGGGTCCAGGGGTCTTAGGTGCATTTGGAAATGTGCAGAGGTGTTTTACTTTGGTTGACAAAGGGGATGGGGTGAGCATATGATGTTGAGTGGGTGGGGCCAAGAGTACTGAAAACCTTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1870123 182 - 1938448 ---TGTTTGCTTCTCCCTCTGACTGTAACTCAGAGGAAATCTGAAGACTGCCACAAGAAAGACTTACCCCATTGTTTCCCAACTGGGTGCTGGGGTCCA-GGGCCTTAGGTGCATCTGGAGATGTGCAGAGGTGTTTTACTTTGGTTGACAAAGGGGATGGGGTGAGCATATGATGTTGAGTGGGT------------------------- i aotNan1.NW_018507213v1 C 0 C 0 a score=450556.000000 s hg38.chr2_KI270769v1_alt 243 46 + 120616 CAGCGAGCTCAAAGCTTTCAAGGAATGGAAAACACCTGTTCCTCaa s panTro5.chr2A 3437618 46 + 111504155 CAGCGAGCTCAAAGCTTTCAAGGAATGGAAAACACCTGTTCCTCaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3324396 46 + 114371477 CAGCGAGCTCAAAGCTTTCAAGGAATGGAAAACACCTGTTCCTCaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 197755 46 + 637652 CAGCGAGCTCAAAGCTTTCAAGGAATGGAAAACACCTGTTCCTCaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2997449 46 + 81552678 CAACGAGCTCAAAGCTTTCAAGGAATGGAAAACACCTGTTCCTCAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3255318 46 + 108979918 CAGCAAGCTCAAAGCTTTCAAGGAATGGAAAGCACCTGTTCCTTAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4968551 46 - 111193037 CAGCAAGCTCAAAGCTTTCAAGGAATGGAAAGCACCTGTTCCTTAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3362780 46 + 3644372 CAGCAAGCTCGAAGCTTTCAAGGAATGGAAAGCACCTGTTCCTTAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3316470 46 - 10304083 CAGCAAGCTCAAAGCTTTCAAGGAATGGAAAGCACTTGTTCTTTAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3400754 46 - 107702431 CGGCAAGCTCAAAGCTTTCAAGGAATGGAAAGCACGTGTTCCTTAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 921208 46 + 1565135 CAGCAAGCTCAAAGCTTTCAAGGAATGGAAAGCACCTGTTCCTTAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3307111 46 - 13651311 CAGCAAGCTCAAAGCTTTCAAGGAATGGAAAGCACCTGTTCCCTAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3392153 46 - 108792865 CAGAGAGCTCAAAGCTTGCAAGGAATGGAAAGCACCTGTTCCTCAA i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 541219 46 + 5243153 CAGCGAGCTCAAAGCTTGCAAGGAATGGAAAGCACCTGTTCCTCAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1870305 40 - 1938448 ------GCTCAAAGCTTGCAAGGAATGGAAAGCACCTGTTCCTCAG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2480597 46 + 5252280 CATTGAGCTCAAAGCTTCCAAGGAGTAGGAAGTACCTGTTCCTCAA i otoGar3.GL873658 N 0 C 0 a score=2663588.000000 s hg38.chr2_KI270769v1_alt 289 294 + 120616 aaaagcttaaaggtctctggtcctgtccagtttctccttttatgatgaggaaa--cagatccgaatgacttgtgtgttcaccagcaagCCTGCCATGTCCCAGGCATCCTCTCTCCT---GAC--ACAAAGGAAGGTGTAATGCCTACCCGCCAGCCCAGACCAGGACAGACGGCCTAGACAAGGGAAGGCAGACCTGCAAATGGATAATTTCAGTGTCC--TGTGGCTCAGTAGAGATCCAGGCAGAGTCCCATGGGCGTGTttaccctagataatgcagccacaacactgcagagccagtg s panTro5.chr2A 3437664 296 + 111504155 aaaagcttaaaggtctctggtcctgtccagtttctccttttatgatgaggaaa--cagaTCCGAATGACTTGTGTGTTCACCGGCAAGCCTGCCATGTCC-AGGCATCCTCTCTCCTCCTGAC--ACAAAGGAGGGTGTAATGCCTACCCGCCAGCCCAGACCAGGACAGACGGCCTAGACAAGGGAAGGGAGACCTGTAAATGGATAATTTCAGTGTCC--TGTGGCTCAGTAGAGATCCAGGCAGAGTCCCATGGGCGTGTTTACCCTAGATAATGCAGCCACAACACTGCAGAGCCAGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3324442 296 + 114371477 aaaagcttaaaggtctctggtcctgtccagtttctccttttatgatgaggaaa--cagaTCCGAATGACTTGTGTGTTCACCGGCAAGCCTGCCATGTCC-AGGCATCCTCTCTCCTCCTGAC--ACAAAGGAGGGTGTAATGCCTACCCGCCAGCCCAGACCAGGACAGACGGCCTAGACAAGGGAAGGGAGACCTGTAAATGGATAATTTCAGTGTCC--TGTGGCTCAGTAGAGATCCAGGCAGAGTCCCATGGGCGTGTTTACCCTAGATAATGCAGCCACAACACTGCAGAGCCAGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 197801 297 + 637652 aaaagcttaaaggtctctggtcctgtccagtttctccttttatgatgaggaaa--cagatccgaatgacttgtgtgttcaccagcaagCCTGCCATGTCCCAGGCATCCTCTCTCCTCCTGAC--ACAAAGGAGAGTGTAATGCCTACCCGCCAGCCCAGACCAGGACAGACGGCCTAGACAAGGGAAGGCAGACCTGCAAATGGATAATTTCAGTGTCC--TGTGGCTCAGTAGAGATCCAGGCAGAGTCCCATGGGCGTGTTTACCCTAGATAATGCAGCCACAACACTGCAGAGCCAGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2997495 297 + 81552678 Aaaagctgaaaggtctctgatccagtccagtttctccttttatgatgaggaaa--cagatccgaatgacttgtgcattcaccagccagCCTGCCATGTCCCAGGCATCCTCTCTCCTCATGAC--ACAAAGGAGGGTGTGATGCCCACCCGCCAGCCCAGACCAGGACAGATGGCCTAGACAAGGGAAGGCAGACCTGCAAATGGATAATTTCGGTGCCC--TGTGGCTCAGTAGAGGTCCGGGCAGATTCCCATGGACGTGTTTACCCTAGATAATGCAGCCACTACACTGCAGGGCCAGTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3255364 297 + 108979918 Aaaagctgaaaggtctctgattcagtccagtttctccttttatgatgaggaaa--cagatccgaatgacttgtgcgttcaccagcaagCCTGCCATGTCCCAGACATCCTCTCTCCTCGTGAC--ACAAAGGAGGGCGTGGTGCCCATCCGCCAGCCCAGACCAGGACAGATGGCCTAGACAAGGGAAGGCAGACCTGCAAATGGATAATTTCAGTGCAC--TGTGGCTCAGTAGAGGTCCAGGCAGATTCCCATGGGCGTGTtcaccctaggtaatgcagccagtacactgcagagccagtg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4968597 297 - 111193037 AAAAGCTGAAAGGTCTCTGATTCAGTCCAGTTTCTCCTTTTATGATGAGGAAA--CAGATCCGAATGACTTGTGCGTTCACCAGCAAGCCTGCCATGTCCCAGACATCCTCTCTCCTCGTGAC--ACAAAGGAGGGCGTGGTGCCCATCCGCCAGCCCAGACCAGGACAGATGGCCTAGACAAGGGAAGGCAGACCTGCAAATGGATAATTTCAGTGCAC--TGTGGCTCAGTAGAGGTCCAGGCAGATTCCCATGGGCGTGTtcaccctaggtaatgcagccagtacactgcagagccagtg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3362826 297 + 3644372 Aaaagctgaaaggtctctgattcagtccagtttctccttttatgatgaggaaa--cagatccgaatgacttgtgcgttcaccagcaagCCTGCCATGTCCCAGACATCCTCTCTCCTCGTGAC--ACAAAGGAGGGCGTGGTGCCCATCCGCCAGCCCAGACCAGGACAGATGGCCTAGACAAGGGAAGGCAGACCTGCAAATGGATAATTTCAGTGCAC--TGTGGCTCAGTAGAGGTCCAGGCAGATTCCCATGGGCGTGTtcaccctaggtaatgcagccagtacactgcagagccagtg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3316516 297 - 10304083 Aaaagctgaaaggtctctgattcagtccagtttctccttttatgatgaggaaa--cagatccgaatgacttgtgcgttcaccagcaagCCTGCCATGTCCCAGACATCCTCTCTCCTCGTGAC--ACAAAGGAGGGCGTGGTGCCCATCCGCCAGCCCAGACCAGGACGGATGGCCTAGACAAGGGAAGGCAGACCTGCAAATGGATAATTTCAGTGCAC--TGTGGCTCAGTAgaggtccaggcagattcccatgggcgtgttcaccctaggtaatgcagccagtacactgcagagccagtg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3400800 297 - 107702431 AAAAACTGAAAGGTCTCTGATTCAGTCCAGTTTCTCCTTTTATGATGAGGAAA--CAGATCCGAATGACTTGTGCGTTCACCAGCAAGCCTGCCATGTCCCAGACATCCTCTCTCCTCGTGAC--ACAAAGGAGGGCGTGGTGCCCATCCGCCAGCCCAGACCAGGACAGATGGCCTAGACAAGGGAAGGCAGACCTGCAAATGGATAATTTCAGTGCAC--TGTGGCTCAGCAGAGGTCCAGGCAGATTCCCATGGGCATGTtcaccctaggtaatgcagccagtacactgcagagccagtg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 921254 297 + 1565135 Aaaagctgaaaggtctctgattcagtccagtttctccttttatgatgaggaaa--cagatccgaatgacttgtgcgttcaccagcaagCCTGCCATGTCCCAGACATCCTCTCTCCTCGTGAC--ACACAGGAGGGCGTGGTGCCCATCCGCCAGCCCAGACCAGGACGGATGGCCTAGACAAGGGAAGGCAGACCTGCAAATGGATAATTTCAGTGCAC--TGTGGCTCAGTAGAGGTCCAGGCAGATTCCCATGGGCGTGTtcaccctaggtaatgcagccagtacactgcagagccagtg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3307157 296 - 13651311 AAAAGCTGAAAGGTCTCTGATCCAGT-CAGTTTCTCCTTTTATGATGAGGAAG--CAGATCCGAATGACTTGTGCGTTCACCAGCAAGCCTGCCATGTCCCAGACATCCTCTCTCCTCGTGAC--ACAAAGGAGGGCGTGGTGCCCACCCACCAGCACAGACCAGGACAGATGGCCTAGACAAGGGAAGGCAGACCTGCAAATGGATGATTTCAGTGCAC--TGTGGCTCAGTAGAGATCCAGGCAGATTCCCATGGGCGTGTttaccctaggtaatgcagccagtacactgcagagccagtg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3392199 291 - 108792865 AAAAGCTGAACGGTCTCTG-TCCAGTCCAGTTTCTCCTC---TGATGATGAAA--CAGATCCGAATGACTTGTGTGTTCACCAGCAAACCTGCAGTGTCCCAGGTATCCACTTTCCTCGTGAA--ACAGAGGCAGGCGTGATACCCACCCGCCAGCCCAGACCAGGACAGATGGCCTAGACAAGAGACAGCAGACCTGCAGGTGGATAATTACAGTGCCC--TGTGGCTCAGAGGACGT-CAGGCCAATTCCCATGGGCGTGTTTA-GTGAGGGAATGCAGCCAGTGCACTGCAGAGCCGGTG i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 541265 294 + 5243153 AAAAGCTGAGCGGTCTCTG-TCCAGTCCAGTTTCTCCTTTTATGATGAGGAAT--CAGATCCGAATGACTCGTGTGTTCACCAGCAAACCTGCAGTGTCCCAGGCATCCACTTTCCTCGTGAC--ACAGAGGCGGGCGTGATACCCACCTGCCAGCCCAGACCAGGACGGATGGCCTAGACAAGAGAAGGCAGATTTGCAGGTGGATAATT-CAGTGCCC--TGTGGCTCGGAGGACGT-CAGGCTGATTCCCATGGGCGTGTttacccaagggaacgcagccagtgcactgcggagccagtg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1870345 292 - 1938448 AAGAGCCGAGCGGTCTCTG-TCCAGGCCAGTTTCTCCTT---TTATGATGAAA--CAGATCTGAACAACTTGTGTGTTCACCAGCAAACCTGCAGTGTCCCAGGCATCCACTTTCCTCATGAC--ACAGAGGCGGGAGTGATACCCACCCGCCAGCTCAGACCAGGACGGATGACCTAGACAAGAGAAGGCAGACCTGCAGGTGGATAATGACAGTGCCC--TGTGGCTCAGAGGATGT-CAGGCCGATTCCCATGGGTGTGTttacctgagggaatgcagccagtgcactgcagagccagtg i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2480643 246 + 5252280 AGGTG----AAAGTCTCTGATCCAGTCCAGTTTCCCCTTTTAGGATGAGGAAAGTGAGATTAGAGTGCTTTGTGCATTCAACTATAAGCCAGCTGTGTCCCC-ATATCCACCCTGCTGGTAA---------------------------CGCCAGCCCAGACCCAGACGGATGGCCTAGGT-GGGGAAGGCAG-------------TAGGTGTGGCCCCCCGTGCGGCTCAGCAGGGTCACA--------CCCCTGGGCGCGTTCACCCAGGCTGATGCAGC--GCGCGCTGCAGAGCCCGC- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 491243 282 + 2232271 AAAAGGTTAAAGATTTCTGATCCAGTTCAGTTCCTCATTTTATG-TTAGGAAA--C---------TGATTTGTGcattcatcaatgagcctgctatatgccgaatattcactatcctaggtactagcaattcaaagaataggacatagcctgtgtctcggagc---acttataccctcgtctagggaaaatagtcttataaatggatagttataacaaaa--tgtgctgtaatagaggtaagagcagatttccatg--TATGTTTA-TGAAGGAAATGCTACTAGTAAGTGGCAAAGCCATG- i dasNov3.JH580157 N 0 C 0 a score=1347742.000000 s hg38.chr2_KI270769v1_alt 583 126 + 120616 ccagaacacaggtcctctttgccttagttctggcctctttG-----TC-----TTATGTTGTATTTCTCCCTACCATAGAAAATGACTAATTGTATTTCTCTCAGAAGGATCTCTGTTTAAGTCAAAGAACTAGAa s panTro5.chr2A 3437960 126 + 111504155 CCAGAACACAGGTTCTCTTTGCCTTAGTTCTGGCCTCTTTG-----TC-----TTATGTTGTATTTCTCCCTACCATAGAAAATGACTAATTGTATTTCTCTCAGAAGGATCTCTGTTTAAGTCAAAGAACTAGAa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3324738 126 + 114371477 CCAGAACACAGGTTCTCTTTGCCTTAGTTCTGGCCTCTTTG-----TC-----TTATGTTGTATTTCTCCCTACCATAGAAAATGACTAATTGTATTTCTCTCAGAAGGATCTCTGTTTAAGTCAAAGAACTAGAa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 198098 126 + 637652 CCAGAACACAGGTTCTCTTTGCCTTAGTTCTGGCCTCTTTG-----TC-----TTATGTTGTATTTCTCCCTACCATAGAAAATGACTAATTGTATTTCTCTCAGAAGGATCTCTGTTTAAGTCAAAGAACTAGAa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2997792 126 + 81552678 CCAGAACACAGGTCCTGTTTGCCTTCGTTCTGACCTCTTTG-----TC-----TTATGTTATATTTCTCCCTACCATAGAAAATGACTAATTGTATTTCTCTCGGAAGGATTTCTGTTTAAGTTAAAGAGCTAGAa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3255661 126 + 108979918 ccagaacgcaggtcctgtttgccttagttctggcctctttG-----TC-----TTATGTTGTAGTTCTCTCTACCATAGAAAATGACTAATTATATTTCTCTCAGAAAGATTTCTGTTTAAATCAAAGAACTAGAa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4968894 126 - 111193037 ccagaacgcaggtcctgtttgccttagttctggcctctttG-----TC-----TTATGTTGTAGTTCTCTCTACCATAGAAAATGACTAATTATATTTCTCTCAGAAAGATTTCTGTTTAAATCAAAGAACTAGAa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3363123 126 + 3644372 ccagaacacgggtcctgtttgccttagttctggcctctttG-----TC-----TTATGTTGTAGTTCTCTCTACCATAGAAAATGACTAATTATATTTCTCTCAGAAAGATTTCTGTTTAAATCAAAGAACTAGAa i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3316813 126 - 10304083 ccagaacacaggtcctgtttgccttagttctggcctctttg-----TC-----TTATGTTGTATTTCTCTCTACCATAGAAAATGACTAATTATATTTCTCTCAGAAAGATTTCTGTTTAAATCAAAGAACTAGAa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3401097 126 - 107702431 ccagaacacaggtcctgtttgccttagttctggcctctttG-----TC-----TTATGTTGTATTTCTCTCTACCATAGAAAATGACTAATTATATTTCTCTCAGAAAGATTTATGTTTAAATCAAAGAACTAGAa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 921551 126 + 1565135 ccagaacacaggtcctgtttgccttagttctggcctctttG-----TC-----TTATGTTGTATTTCTCTCTACCATAGAAAATGACTAATTATATTTCTCTCAGAAAGATTTCTGTTTAAATCAAAGAACTAGAa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3307453 126 - 13651311 ccagaacacaggtcctgtttgccttagttctggcctctttG-----TC-----TTATGTTGTGTTTCTCCCTACCGTAGAAAATGACTAATTCTATTTCTCTCAGAAAGATTTCTGTTTAAATCAAAGAACTAGAa i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3392490 125 - 108792865 CCAGAATGCAGGGCCTGTGTGCCTTAGTTCTGGGCTCTTTG-----TC-----CTGTGTTGTATTTCTCCCTACCATGGAAAATGACTAACTGTA-TTCTCTCAGAAAGACTTCTGTTTAAGTCAGAGAACTAAAa i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 541559 125 + 5243153 ccagaatgcagggcctgtttgcctgagtgctgggctctttg-----tc-----ctgcgctgtattTCTCCCTACCGTAGAAAATGACTAATTGTA-TTCTCTCAGAAAGACTTCTGTTTAAGTCAAAGAACTAGAa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1870637 125 - 1938448 ccagaatgcagggcctgtttgccttagttctgggctctttG-----TC-----CTGTGTTGTGTTTCTCCCTACCATAGAAAATGACTAATTGTA-TTCTCTCAGAAAGACTTCTGTTTAAGTCAAACAACTAGAa i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 909573 130 + 1238772 ccagaactcgggtcctgtttgtcttggttctgggttctttgtcttata-----ttatgttgtATTTCTGTCTACCATAT-CAATGACTAATTGTGTTTTTCTCAGAAAGATTTGTATGTAAGCCAAAGAACTAGAA i proCoq1.NW_012151163v1 N 0 C 0 s otoGar3.GL873658 2480889 109 + 5252280 CTGGAGCTCAGGTGCTGCCGGTCTCG--------------------TG-----TTACGTTGTGTTTCTGTCTGCCATGT-CAGTGGCTCCTGGTG-TTTTCCCAGGAAGATTTGTAGGCAAGACAAAGAGCTAGAA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 491525 130 + 2232271 CCAGCACTCAGGACCTGTGTGCTTTGGTTCTGGGCTCTTTT-----TCTTCTATTGTGTTGTATTTGGGCCTACCATAT-AAATGACTAATTGTGCTTATCTCAGAAAGATTTACATTTAAGCCAAAGAACTAGAA i dasNov3.JH580157 C 0 C 0 a score=1675903.000000 s hg38.chr2_KI270769v1_alt 709 162 + 120616 a-cagcactaattatcagggaaatgcaaatcaaaatcacaatgagat-----atcatggctgtta-----------accgaaaactctggagacagcaagagttggtgagggtgtggagaaaggg--acccttgtgcactgttggtgggaatgtaaattaatacagccattatggaaaaca s panTro5.chr2A 3438086 162 + 111504155 a-cagcactaattatcagggaaatgcaaatcaaaatcacaatgagat-----atcatgactgtta-----------actgaaaactctggagacagcaagagttggtgagggtgtggagaaaggg--acccttgtgcactgttggtgggaatgtaaattaatacagccattatggaaaaca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3324864 162 + 114371477 a-cagcactaattatcagggaaatgcaaatcaaaatcacaatgagat-----atcatgactgtta-----------actgaaaactctggagacagcaagagttggtgagggtgtggagaaaggg--acccttgtgcactgttggtgggaatgtaaattaatacagccattatggaaaaca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 198224 162 + 637652 a-cagcactaattatcagggaaatgcaaatcaaaatcacaatgagat-----atcatggctgtta-----------actgaaaactctggagacagcaagagttggtgagggtgtggagaaaggg--acccttgtgcactgttggtgggaatgtaaattaatacagccattatggaaaaca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2997918 162 + 81552678 a-cagcactaattatcagtgaaatgcaagtcaaaatcacaatgagat-----atcacggctgtta-----------accaaaaactctggagacagcaagagttggtgagggtgtggagaaagag--acccttgtacactgttggtgggaatgtaaattaatacagccattttggaaaaca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3255787 162 + 108979918 a-cagcgctaattatcagggaaatgcaaatcaaaaccacaatgagat-----atcatggctatta-----------accaaaaactctggagacagcaagagttggtgagggtgtagggaaaggg--acccctgtacactgttggttggaatgtgaattaatacagccattatggaaaaca i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4969020 162 - 111193037 a-cagcgctaattatcagggaaatgcaaatcaaaaccacaatgagat-----atcatggctatta-----------accaaaaactctggagacagcaagagttggtgagggtgtggggaaaggg--acccctgtacactgttggttggaatgtgaattaatacagccattatggaaaaca i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3363249 162 + 3644372 a-cagcgctaattatcagggaaatgcaaatcaaaaccacaatgagat-----atcatggctctta-----------accaaaaactctggagacagcaagagttggtgagggtgtggggaaaggg--acccctgtacactgttggttggaatgtgaattaatacagccattatggaaaaca i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3316939 162 - 10304083 a-cagcgctaattatcagggaaatgcaaatcaaaaccacaatgagat-----atcatggctatta-----------accgaaaactctggagacagcaagagttggtgagggtgtggggaaaggg--acccctgtacactgttggttggaatgtgaattaatacagccattatggaaaaca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3401223 162 - 107702431 a-cagcgctaattatcagggaaatgcaaatcaaaaccacaatgagat-----atcatggctatta-----------accaaaaactctggagacagcaagagttggtgagggtgtggagaaaggg--acccctgtacactgttggttggaatgtgaattagtacagccattatggaaaaca i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 921677 162 + 1565135 a-cagcgctaattatcagggaaatgcaaatcaaaaccacaatgagat-----atcatggctatta-----------accaaaaactctggagacagcaagagttggtgagggtatggagaaaggg--acccctgtacactgttggttggaatgtgaattaatacagccattatggaaaaca i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3307579 162 - 13651311 a-cagcactaattatcagggaaatgcaaatcaaaaccacaatgagat-----atcatggctatta-----------accaaaaactctggagacagcaagagttggtgagggtgtggagaaaggg--acccctgtgcactgttggttggaatgtgaattaatacagccgttatggaaaaca i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3392615 159 - 108792865 a-caccactaatcatcagggaaatgcaaatcagaaccacaatgagat-----gtcacgactgtta-----------accaaaacctctggaaacagcaagagt---tgagggtgtagagaaaggg--acccttgtacactgttgctgggaatgtaaattcatacagccattatggaaaaca i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 541684 162 + 5243153 a-caccactaatcatcagggaaatgcaaatcagaaccacaatgagat-----atcatgactgtta-----------accgaaaactctggaaacagcaagagttgatgagggtgtagaaaaaggg--acccttgtacacagttggtgggaatgtaaattcatacagccattatagaaaaca i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1870762 162 - 1938448 a-caccactgatcatcagagaaatgcaaatcagaaccacaatgagat-----atcatgactgtta-----------accaaaaactctggaaacagcaagagttgatgacggtgtagagaaaggg--gcccttgtacactgttggtgggaatgtagattcatacagccattatggaaaaca i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 909703 181 + 1238772 GTcaccactaattattagggaaatgcaaatcaaagccacaacgaaatattacatcttgcctgttaggatggctgttgtcaaaaacacaagaggtagcaagtgttggtgaggatgtagagaaaggggaacccttgtactctgttggtgggaatgtagattagtacagccattatggaaaaca i proCoq1.NW_012151163v1 C 0 I 588 s otoGar3.GL873658 2480998 177 + 5252280 GTcaccaccaactatcagggagatgcgaatcgaaaccacaa-gagataccacatcatgcccgttaggagggctgttgtcaaaaccccaagagatagctagtgtcggtgagggtgcagagaggagggaa-cgttgcaccc--ttggtgggaatgtagactagtacagtcgttacggaagaca i otoGar3.GL873658 C 0 C 0 e dasNov3.JH580157 491655 0 + 2232271 C a score=2974919.000000 s hg38.chr2_KI270769v1_alt 871 357 + 120616 t---ggaggtgcccgaaaaagttaaaaatggagctaccatatgatctaacag-tcccccattctgggtatgtatccaaaggaattgaaatcgggatctcagagagatgcctgcgct-ccatgctcactgcagaattat--acagtagcccagatagggaatcaacctaagtgcctatcgacaggtgagaggacagagaaaatttggtatgtagtggctcacgcccataatcccaacttctcaggaggctgaggcaggaggctcacttgagccatggtgttcaaagctgcaatgagctatgatggcaccactgcactccagcatggataacagagtaagacctgtctctttttaaaaaaaaaaat s panTro5.chr2A 3438248 360 + 111504155 ttatggaggtgcccgaaaaagttaaaaatagagctaccatatgatctaacag-tcccccattctgggtatgtatccaaaggaattgaaatcgagatctcagagagatgcctgcgct-ccatgctcactgcagaattat--acagtagcccagatagggaatcaacctaagtgcctatcgacaggtgagaggacagagaaaatttggtatgtagtggctcatgcccataatcccaacttctcaggaggctgaggcaggaggctcacttgagccatggtgttcaaagctgcaatgagctatgattgcaccactgcactccagcatggataacagagtaagacctgtctctttaaaaaaaaaaaaaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3325026 359 + 114371477 ttgtggaggtgcccgaaaaagttaaaaatagagctaccatatgatctaacag-tcccccattctgggtatgtatccaaaggaattgaaatcgagatctcagagagatgcctgcgct-ccatgctcactgcagaattat--acagtagcccagatagggaatcaacctaagtgcctatcgacaggtgagaggacagagaaaatttggtatgtagtggctcacgtccataatcccaacttctcaggaggctgaggcaggaggctcacttgagccatggtgttcaaagctgcaatgagctatgattgcaccactgcactccagcatggataacagagtaagacctgtctcttt-aaaaaaaaaaaat i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 198386 359 + 637652 ttatggaggtgcccgaaaaagttaaaaatagagctaccatatgatctaacag-tcccccattctgggtatgtatccaaaggaattgaaatcgggatctcagagagatgcctgcgct-ccatgctcactgcagaattat--acagtagcccagatagggaatcaacctaagtgcatatcgacaggtgagaggacagagaaaatttggtatgtagtggctcacgcccataat-ccaacttctcaggaggctgaggcaggaggctcacttgagccatggtgttcaaagctgcaatgagctatgatggcaccactgcactccagcatggataacagagtaagacctgtctcttttttaaaaaaaaaat i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2998080 361 + 81552678 taaaggaggtgccctaaaaagttaaaaatagagctaccatatgatctaacag-tcccccattctgggtatgtatccaaaggaattgagatcaggatctcagagagatgcctgtgct-ccatgctcactgcagaattattcacagtagcccagatagggaatcaacctaagtacccatcgacaggtgagaggacagagaaaatttggtatgtagtggctcgcgcccataatcccaacttctcaggaggctgaggcaggaggatcacttgagccatggtgttcaaagccgcaatgagctatgattgcaccactgcactccagcatgaataacagagtaagacctgtctcttt-aaaaaaaaaaaat i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3255949 352 + 108979918 ttatggaggtgccctaaaaagttaaaaatagagctgccatatgatctaacag-tcccccattctgggtatgtatccaaaggaattaaaatcaggatctcagagagatgcctgcgct-ctatgttcactgcagaattcttcacagtagcccagatagggaatcaacctaagcgcccatcgacaggtgagaggacagag--aatgtggtatatagtggcttgcgcccataatcccaacttctcaggaggctgaggcaggaggatcacttgagccatagtgttcaaagctgcaatgagctgtgattgcaccactgcactccagcgtggataacagagtaagacctgtctct---taa-----aaaat i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4969182 357 - 111193037 ttatggaggtgccctaaaaagttaaaaatagagctgccatatgatctaacag-tcccccattctgggtatgtatccaaaggaattgaaatcaggatctcagagagatgcctgcgct-ctatgttcactgcagaattcttcacagtagcccagatagggaatcaacctaagcgcccatcgacaggtgagaggacagag--aatgtggtatatagtggcttgcgcccataatcccaacttctcaggaggctgaggcaggaggatcacttgagccatagtgttcaaagctgcaatgagctgtgattgcaccactgcactccagcgtggataacagagtaagacctgtctct---taaaaaataaaat i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3363411 352 + 3644372 ttatggaggtgccctaaaaagttaaaaatagagctgccatatgatctaacag-tcccccattctgggtatgtatccaaaggaattgaaatcaggatctcagagagatgcctgcgct-ctatgttcactgcagaattcttcacagtagcccagatagggaatcaacctaagcgcccatcgacaggtgagaggacagag--aatgtggtatatagtggcttgcgcccataatcccaacttctcaggaggctgaggcaggaggatcacttgagccatagtgttcaaagctgcaatgagctgtgattgcaccactgcactccagcgtggataacagagtaagacctgtctct---taa-----aaaat i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3317101 357 - 10304083 ttatggaggtgccctaaaaagttaaaaatagagctgccatatgatctaacag-tcccccattctgggtatgtatccaaagaaattgaaatcaggatctcagagagacgcctgcgct-ctatgttcactgcagaattcttcacagtagcccagatagggaatcaacctaagcgcccatcgataggtgagaagacagag--aatgtggtatatagtggctcgcgcccataatcccaacttctcaggaggctgaggcaggaggatcacttgagccatagtgttcaaagctgcaatgagctgtgattgcaccactgcactcccgcgtggatagcagagtaagacctgtctct---taaaaaataaaat i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3401385 352 - 107702431 ttatggaggtgccctaaaaagttaaaaatagagctgccatatgatctaacag-tcccccattctgggtatgtatccaaaggaattgaaatcaggatctcagagagatgcctgcact-ctatgttcactgcagaattcttcacagtagcccagatagggaatcaacctaagcgcccatcgacaggtgagaggacagag--aatgtggtatatagtggctcgcgcccataatcccaacttctcaggaggctgaggcaggaggatcacttgagccatggtgttcaaagctgcaatgagctgtgattgcaccactgcactccagcgtggataacagagtaagacctgtctct---taa-----aaaat i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 921839 352 + 1565135 ttatggaggtgccctaaaaagttaaaaatagagctgccatatgatctaacag-tcccccattctgggtatgtatccaaaggaattgaaatcaggatctcagagagatgcctgcgct-ctatgttcactgcagaattcttcacagtagcccagatagggaatcaacctaagcgcccatcgacaggtgagagaacagag--aatgtggtatataCtggctcgcacccataatcccaacttctcaggaggctgaggcaggaggatcacttgagccatagtgttcaaagctgcaatgagctgtgattgcaccactgcactccagcgtggataacagagtaagacctgtctct---taa-----aaaat i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3307741 357 - 13651311 ttatggaggtgcccgaaaaagttaaaaatagagctgccatatgatctaacag-tcccccattctgggtatgtatccaaaggaattgaaatcaggatctcagagagatgcctgtgct-ctatgttcattgcagaattcttcacagtagcccagatagggaatcaacctaagcgcccatcgacaggtgagaggacagag--aatgtggtatatagtggctcgcgcccataatcccaacttcttaggaggctgaggctggaggatcacttgagccatggtattcaaagctgcaatgagctatgattgcaccactgcactccagcgtggataacagagtaagacctgtctct---taaaaaataaaaT i colAng1.NW_012118821v1 C 0 I 25 s calJac3.chr14 3392774 360 - 108792865 ttatggaggtgtccaaaaaagttaaaaatagaactaccatatgatctaatagcccccccgttctgggtatgtatccataggaatcaaaatcaggatgtcagagagatgcctgcactcctgcgttcactgcagaattattcagagtagtccagacagggaatcaacctaagtgcccttcgacagctgagaggacaaagaaaat---gtatatagcggctcacacccataatccc-acttctcaggaggctgaggtgggagaatcactggagccacggcattcaaagctgcagtgagctatgatcgcaccaccgcgctcaagcatgggccacagagtgagacctgtctctttaaaaagaaaaaaac i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 541846 363 + 5243153 ttatggaggtgcccaaaaaagttaaaaatagaactgccatatgatctcacag-ccccccgttctgggtatgtatccaaaggaatcgatatcgggatgtcagagagatgcctgcacccctgcgttcactgcagaattattcacagtagtccagataggtaatcaacctaagtgcccttcagtagctgagaagacaaagaaaatgtggtatatagcagctcacacccatcatcccaacttctcaggaagctgaggcaggtggatcactggagccatagtgttcaaagctgcagtgagctgtgattgcaccactgcactcaagcatgggtcacagagtgagacatgtctctttaaaaacaaaaaaaa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1870924 362 - 1938448 ttatggaggtgcccaaagaaattgaaaatagaactaccatatgatctaacag-ccccccgttctgggtatgtatccaaaggagtcgaaatcaggatgtgagagagatgcctgcactcctgcg-tcactgcagaattactcacagtagtccagatagggaatcaacctaagtgcccttcgacagctgagaggacaaagaaaatgtggcacatagcggctcacacccataatcccaacttctcaggaggctgaggcaggaggatcaccggagccatggtgttcaaagctgcagtgagctgtgattgcaccactgcactcaagcatgggtcacagagtgagacctgtctctttaaaaacaaaaaaaa i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2481175 170 + 5252280 --acggaga-gcttcacaaagttaaaaacagaattgccatatgatccagcca-tccccccttctggatatgtatccagaagagttgaaagcaggatctcagagaga--------ct-c----------------------acagtcgccaagctaga-aggcaaccagagcagccgtc-------------actgaa-------------------------------------------cgaggggcggaggcgtg-----------------------------------------------------tgcac------------------------------------------------- i otoGar3.GL873658 C 0 C 0 e proCoq1.NW_012151163v1 909884 588 + 1238772 I e dasNov3.JH580157 491655 0 + 2232271 C a score=7353.000000 s hg38.chr2_KI270769v1_alt 1228 5 + 120616 gtttt s panTro5.chr2A 3438608 5 + 111504155 gtttt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3325385 5 + 114371477 gtttt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 198745 5 + 637652 gtttt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2998441 5 + 81552678 gtttt i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3393134 4 - 108792865 a-ttt i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 542209 5 + 5243153 aTTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1871286 5 - 1938448 atttt i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 909884 588 + 1238772 I e dasNov3.JH580157 491655 0 + 2232271 C e otoGar3.GL873658 2481345 0 + 5252280 C e colAng1.NW_012118821v1 3308098 25 - 13651311 I e manLeu1.NW_012104432v1 922191 0 + 1565135 C e chlSab2.chr14 3401737 0 - 107702431 C e cerAty1.NW_012000820v1 3317458 0 - 10304083 C e macNem1.NW_012011978v1 3363763 0 + 3644372 C e macFas5.chr13 4969539 0 - 111193037 C e rheMac8.chr13 3256301 0 + 108979918 C a score=3186872.000000 s hg38.chr2_KI270769v1_alt 1233 371 + 120616 taaagaaaag----------aaaatatacacaatggaattctatttagtccttaaaaaacaaggggaaaccttgccatttgtgactatatgcatgcacctggtggacattaggttaagtgaaataagccagacacaaaatgatgaataccacgtgatctcatttacatgtggaatctacagaagtcagactcatagaagctggggcctgggggtgtgaggggcatg----gggagatgttactcaaagggtacagagcttcatttatgcaagaagaaggaatgctggggatggaatgtacatttaacatggtgactatagttagtaatactgcgttgtttacttgaaatttgatgagagcagattttaagtgtc--ctcaccaccct s panTro5.chr2A 3438613 371 + 111504155 taaagaaaag----------aaaatatacacaatggaattctatttagtccttaaaaaacaaggggaaaccttgccatttgtgactatatgcatgcacctggtggacattaggttaagtgaaataagccagacacaaaatgatgaataccacgtgatctcatttacatgtggaatctacagaagtcagactcacagaagctggggcctgggggtgtgaggggcatg----gggagatgttactcaaagggtacagagcttcatttatgcaagaggaaggaatgctggggatggaatgtatatttaacatggtgactatagttagtaatactgcgttgtttacttgaaatttgacgagagcagattttaagtgtc--ctcaccaccct i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3325390 371 + 114371477 taaagaaaag----------aaaatatacacaatggaattctatttagtccttaaaaaacaaggggaaaccttgccatttgtgactatatgcatgcacctggtggacattaggttaagtgaaataagccagacacaaaatgatgaataccacgtgatctcatttacatgtggaatctacagaagtcagactcacagaagctggggcctgggggtgtgaggggcatg----gggagatgttactcaaagggtacagagcttcatttatgcaagaggaaggaatgctggggatggaatgtatatttaacatggtgactatagttagcaatactgcgttgtttacttgaaatttgacgagagcagattttaagtgtc--ctcaccaccct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 198750 366 + 637652 taaagaaaag----------aaaatatacacaatgga-----atttagtccttaaaaaacaagggtaaaccttgccatttgtaactatatgcatgcacctggtggacattaggttaagtgaaataagccagacacaaaatgatgaataccacgtgatctgatttacatgtggaatctacagaagtcagactcatagaagctggggcctgggggtgtgaggggcatg----gggagatgttactcaaagggtacagagcttcatttatgcaagaggaaggaatgctggggatggaatgtacatttaacgtggtgactatagttagtaatactgcgttgtttacttgaaatttgatgagagcagattttaagtgtc--ctcaccaccct i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2998446 371 + 81552678 taaagaaaag----------aaaatatacacaatggaattctatttagtccttaaaagacaaggggaaaccttgccatttgtgactatctgcatgcacctggtggacattaggttaaatgaattaagccagacacaaaatgatgaataccacgtgatctcatttacatgtggaatctacagaagtcagactcatagaagctggggcctgggggtgtgaggggcatg----gggagatgttactcaaagggtacagagcttcatttatgcaagaggaaggaatgctggggatggaatgtacatttaacatggtgactatagttagtaatactgcattgtttacttgaaatttgatgagagcagattttaagtgtc--ctcaccacccg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3256301 367 + 108979918 ------aaag----------aaaatatacacaatgaaattctatttagtccttaaaaaacaaggggaaaccttgccatttgtgactctatgcatgcacctggtggacattaggttaagtgaaataagccagacacaagatgatgaataccacatgatctcatttacatgtggaatctacaaaagtcggactcatagaagctggggcctgggagtgtgaggggcatg----gggagatgttactcaaagggtacagagcttcatttatgcaagaggaaggagtgctggggatggaatgtacatttagcatggtgactgtagttagtaatactgcagtgtttacttgaaatttgatgagagcagatttcaagtgtccgctcaccaccct i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4969539 367 - 111193037 ------aaag----------aaaatatacacaatgaaattctatttagtccttaaaaaacaaggggaaaccttgccatttgtgactctatgcatgcacctggtggacattaggttaagtgaaataagccagacacaagatgatgaataccacatgatctcatttacatgtggaatctacaaaagtcggactcatagaagctggggcctgggagtgtgaggggcatg----gggagatgttactcaaagggtacagagcttcatttatgcaagaggaaggagtgctggggatggaatgtacatttagcatggtgactgtagttagtaatactgcagtgtttacttgaaatttgatgagagcagatttcaagtgtccgctcaccaccct i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3363763 367 + 3644372 ------aaag----------aaaatatacacaatgaaattctatttagtccttaaaaaacaaggggaaaccttgccatttgtgactctatgcatgcacctggtggacattaggttaagtgaaataagccggacacaagatgatgaataccacatgatctcatttacatgtggaatctacaaaagtcggactcatagaagctggggcctgggagtgtgaggggcatg----gggagatgttactcaaagggtacggagcttcatttatgcaagaggaaggagtgctggggatggaatgtacatttagcatggtgactgtagttagtaatactgcagtgtttacttgaaatttgatgagagcagatttcaagtgtccgctcaccaccct i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3317458 370 - 10304083 ---aaaaaag----------aaaatatacacaatgaaattctatttagtccttaaaaaacaaggggaaaccttgccatttgtgactctatgcatgcacctggtggacattaggttaagtgaaataagccagacacaagatgatgaataccaggtgatctcatttacatgtggaatctacaaaagtcggactcatagaagctggggcctgggagtgtgaggggcatg----gggagatgttactcaaagggtacagagcttcatttatgcaagaggaaggagtgctggggatggaatgtacatttagcatggtgactgtagttagtaatactgcaatgtttacttgaaatttgatgagagcagatttcaagtgtccgctcatcaccct i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3401737 367 - 107702431 ------aaag----------aaaatatacacaatggaattctatttagtccttaaaaaacaaggggaaaccttgccatttgtgactctgtgcatgcacctggtggacattaggttaagtgaaataagccagacacaagatgatgaataccacgtgatctcatttacatgtggaatctacagaagtcggactcatagaagctggggcctgggagtgtgaggggcatg----gggagatgttactcaaagggtacagagcttcatttatgcaagaggaaggagtgctggggatggaatgtacatttagcatggtgactgtagttagtaatactgcagtgtttacttgaaattttatgagagcagatttcaagtgtccactcaccaccct i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 922191 377 + 1565135 ------aaaataaaataaacaaaatatacacaatgaaattctatttagtccttaaaaaacaaggggaaaccttgccatttgtgactctatgcatgcacctggtggacattaggttaagtgaaataagccagacacaagatgatgaataccacgtgatctcatttacatgtggaatctacaaaagtcggactcatagaagctggggcctgggagtgtgaggggcatg----gggagatgttactcaaagggtacagagcttcatttatgcaagaggaaggagtgctggggatggaatgtacatttagcatggtgactgtagttagtaatactgcagtgtttacttgaaatttgatgagagcagatttcaagtgtccgctcaccaccct i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3308123 373 - 13651311 taaagaaaag----------aaaatatgcacaatgaaattctatttagtccttgaaaaacaaggggaaaccttgccatttgtgactatatgcatgtacctggtggacattaggttaagtgaaataagccagacacaaaatgatgaataccacgtgatctcatttacatgtggaatctacagaagtcgaactcatagaagctggggcctgggagtgtgaggggcatg----gggagatgttactcaaagggtagagagctccatttatgcaagaggaaggagtgctggggatggaatgtacatttagcatggtgactgtagttagtaatactgcattgtttacttgaaatttgatgagagcagatttcaagtgtccgctcgccaccct i colAng1.NW_012118821v1 I 25 C 0 s calJac3.chr14 3393138 351 - 108792865 -----taaag----------aaaaga---------gaaTTCtgtttagtcctt---aaacaaggggagaccttgccatctgtgactgtgtgcatgaacctagtagacattaggttaagtgaaataaaccagaccaaaaatgttgaataccacgtgatcacacttacatggggaatctacaaaagtcaaacttgtggaagctggggctccagggtatgaggggcgtg----gggagatgttact--cagggtgcagagcttcatttatgcaggaggaaggagtgctggggacggaacgtacatatagcacggtgactgtagttagtaacatcgaattgttcacctgcaatgtgatgagagcaggttttaagtgtc--ctcaccaccc- i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 542214 353 + 5243153 -----TAAAG----------GAAAGA---------gaattctatttagtcctt---aaacaaggggaaaccttgccatctgtgactatgtgcatgaacctagtagacgttaggttaagtgaaataagccagacacgaaacgatgaatgccacgtgatcacacttatatgcagaatctacaaaagtcaaactcatagaagctggggctccggagtgtgaggggcatg----gggagatgttactgagagggtacagagcttcatttatgcaggaggaaggagtgctggggacggggcgtacatatagcacagtaactgtagttagtaacaccg-attgtttacctgaaatgtgatgagcgcaagttttaagtgtc--ctcaccacccc i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1871291 349 - 1938448 -----ttaag----------aaaaaa---------gaaTTCtatttaatcctt-------aagaggaaaccttgccatttgtgactacgtgcatgaacctagtagacattaggttaactgaaataagccagacacaaaatgatgaataccacgtgatcacacttacatgtggactctacaaaagtcaaactcatagaagctggggctccggggtatgaggggcacg----gggagatgttactgagagggtacagagcttcagttatgcaggaggaaggtgtgctgggg-cagaacacacagagagcacagtgactgtagttagtaacaccccatcggttacctgacgtgtgatgagagcaggttttaagtgtc--ctcaccacccc i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2481345 326 + 5252280 --------------------------------gtggaatactgtgcagctcacaagga-----gggaagtcctgccatttgtgacagcatggctgagcctagctggccttgtgtcaa-tgaaataaaccagatccaaaaggacaaata-catgt-atttcacttatatgtgaaatctaataaagtcaaactcacagaagct-gggtgaggggttgtgatgggagaggaatgggagatgttggtcagggggcacaaaggttcattcctgcaagaggagtgaattctggggatctaacttac----agcaccgtgattatagtcagtgacactgcgtcgtttccttgagatttcaggagagtgtgcttcctgc---------------- i otoGar3.GL873658 C 0 C 0 e proCoq1.NW_012151163v1 909884 588 + 1238772 I e dasNov3.JH580157 491655 0 + 2232271 C a score=1891060.000000 s hg38.chr2_KI270769v1_alt 1604 212 + 120616 --cacacat-atacacacacacaca--gtaactatgggtagtgacggttgtgttaattatttcgactttggaattcagtacacaatgtctatttataacaaatgatcatat---ataccttgaatatatataatttgtatttgtcaactaAATATTCTAAAATTTAAAAA-------TA---TGCCTTTTCTATTTACCCACATT--TAAAAAAAAAAAAAAA-GAACTGGAA s panTro5.chr2A 3438984 217 + 111504155 --cacacat-atacacacacaca----gtaactatgggtagtaacggttgtgttaattattttgactttggaattcagtacacaatgtttacttataacaaatgatcatgttgtataccttgaatatatataatttgtatttgtcaactaaatatcctaaaatttaaaaa-------TAAAATGCCTTTTCTATGTACCCACATT--TaaaaaaaaaaaaaaaagaaCTGGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3325761 213 + 114371477 --cacacat-atacacacacaca----gtaactatgggtagtaacggttgtgttaattattttgactttggaattcagtacacaatgtctacttataacaaatgatcatgttgtataccttgaatatatataatttgtatttgtcaactaaatatcctaaaatttaaaaa-------TAAAATGCCTTTTCTATGTACCCACATT--TAAAAAAAAAAAA----GAACTGGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 199116 214 + 637652 --cacacat-atacacacacaca----gtaactatgggtagtgacagttgtgttaattatttcgactttggaattcagtatacaatgtctacttataacaaatgatcatgttgtataccttgaatatatataatttgtatttgtcaactaAATATTCTAAAATTTAAAAA-------TAAAATGCCTTTTCTATTTACCCACATT--TAAAAAAAAAAAAA---GAACTGGAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2998817 205 + 81552678 --tacacat-atacacacacact----gtaactatgggtagtgatggttgtgttaattattttgactttgggattcagtacacagtgtctacttacaacaaatgatcatgttgtataccttgaatatatata------atttctCAACTAAATACTGTAAAATTTAAAAA-------TAAAATGCCTTTTCTATTTACCCACATT--TAAAAAAAAAA------AAACTGGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3256668 217 + 108979918 --cacacat-gtacacacacaca----gtaactatgggtagtgacggttgtgttaattatttgga-tttggaattcagtacacaatgtctccttataacaaatgatcatgttgtatatcttgaatatatataatttgtatttgtcaactaAATATTCTAAAATTTAAAAA-------TAAAATGCCTTTTCTATTTACCCACATT-AAAAAAAAAAAAGAAGAAGAACTGGAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4969906 217 - 111193037 --cacacat-gtacacacacaca----gtaactatgggtagtgacggttgtgttaattatttgga-tttggaattcagtacacaacgtctccttataacaaatgatcatgttgtataccttgaatatatataatttgtatttgtcaactaAATATTCTAAAATTTAAAAA-------TAAAATGCCTTTTCTATTTACCCACATT-AAAAAAAAAAAAGAAGAAGAACTGGAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3364130 218 + 3644372 --cacgcat-gtacacacacaca----gtaactatgggtagtgacggttgtgttaattatttgga-tttggaattcagtacacaacgtctccttataacaaatgatcatgttgtataccttgaatatatataatttgtatttgtcaactaAATATTCTAAAATTTAAAAA-------TAAAATGCCTTTTCTATTTACCCACATTAAAAAAAAAAAAAGAAGAAGAACTGGAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3317828 213 - 10304083 --cacacat-gt--acacacaca----gtaactatgggtagtgacggttgtgttaattatttgga-tttggaattcagtacacaacgtctccttataacaaatgatcatgttgtgtaccttgaatatatataatttgtatttgtcaactaAATATTCTAAAATTTATAAA-------TAAAATGCCTTTTCTATTTACCCACATT---AAAAAAAAAAGAAGAAGAACTGGAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3402104 212 - 107702431 --cacacat-gt--acacacaca----gtaactatgggtagtgatggttgtgttaattatttgga-tttggaattcagtacacaacgtctccttataacaaatgatcatgttgtataccttgaatatatataatttgtatttgtcaactaAATATTCTAAAATTTAAAAA-------TAAAATGCCTTTTCTATTTACCCACATT--TAAAAAAAAA--AAAAAGAACTGGAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 922568 216 + 1565135 --cacacat-gtacacacacaca----gtaactatgggtagtgacggttgtgttaattatttgga-tttggaattcagtacacaacgtctccttataacaaatgatcatgttgtgtaccttgaatatatataatttgtatttgtcaactaAATATTCTAAAATTTAAAAA-------TAAAATGCCTTTTCTATTTACCCACATT--AAAAAAAAAAAGAAGAAGAACTGGAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3308496 202 - 13651311 --cacacat-atacacatacaca----gtaactatgggtagtgacggttgtgttaattattttga-tttggaactcagtacacaatgtctacttataacaaatgatcatgttgtataccttgaatatatataatttgtatttgtcaactaAATATTCTAAA-----------------AGAATGCCTTTTCTATTTACCCACATT------AAAAAAAAAAAAAGAACTGGAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3393489 218 - 108792865 ----cacac-acacacacacacaaatggtaactatgggtagtgactgttgtgttaactattttcactctggaattcagtacacagtgtctactt-----aaatggtcatgttatataccttgaatatatatcatttgcatttgtcaactgaatattctaaaacttaaaaaTAAAATCTAAAATGCCTTTTCTATTTACCCATGTT-----AAAAAAAAAAAAAAGAACTGGAA i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 542567 230 + 5243153 --cacacat-atacacacacacaaatggtaactatgagtagtgactgttgtgttcattattttcactctggaattcagtatatagtgtctacttatatcaaatgatcatgttatataccttgaatatatatcatttgtatttgtcaactGAATATTCTAAAATTTAAAAATAAAATGTAAAATGCCTTTTCTATTTACCCATGTTaaaaaaaaaaaaaaaaaaagaaCTAGAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1871640 228 - 1938448 --cacacgtaatacacacacacacacggtaactatggatagtgactgttgtgttaattattttcactctggaattcagtacacagcgtctacttatatcaaatgatcatgttatataccttgaatatatatcatttatatttgtcaactGAATATTCTAGAATTTAAAAATAAAATGTAAAATGCCTTTTCTATTTACCCATGTT---aaaaaaaaaaaaaaaaaaCCTGGAA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 910472 209 + 1238772 cacacacac-acacacacacaca----gtaagtatgggtggtgatggttgtgttaat----tggactgtggaattcagtacacaatgcatgcttatatcgaatgactgtgttgtacaccttgaatatagacagttttgatttgtcagttaAGTGTTCCAAAATTAAAGA--------TAAAATGCCTTTTCTATTTATCCACACT--TAAAAAAAAAAAG-----AACTAGAA i proCoq1.NW_012151163v1 I 588 C 0 s otoGar3.GL873658 2481671 188 + 5252280 --cacacac-agacac-cgcaca----gtaactaagg--ggcgaatgttgtgtagac-----------tggaattcagtgccctgcgtatgcttgtatcagatggccgtgccgtaccccttgaatagagacaattttga-ttgtcaattaaatatctcaaagtta-------------aaaaTACCTTTTCTGTTTATCCACACC--TTTAAAAACATAG--------TAGGA i otoGar3.GL873658 C 0 C 0 e dasNov3.JH580157 491655 0 + 2232271 C a score=432944.000000 s hg38.chr2_KI270769v1_alt 1816 41 + 120616 ATCAAATGGCTTAACTTTAGTGTTCCATAAAGAGTGAGTAG s panTro5.chr2A 3439201 41 + 111504155 ATCAAATGGCTTAACTTTAGCGTTCCATAAAGAATGAGTAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3325974 41 + 114371477 ATCAAATGGCTTAACTTTAGCGTTCCATAAAGAATGAGTAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 199330 41 + 637652 ATCAAATGGCTTAActttagtgttccataaagaatgagtag i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2999022 41 + 81552678 ATCAAATGGCTTAATTttagtgttccgtaaagaatgagtag i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3256885 41 + 108979918 GTCAAATGGCTTCATTTTAGTGTTCTATAAAGAATGAGTAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4970123 41 - 111193037 GTCAAATGGCTTCATTTTAGTGTTCTATAAAGAATGAGTAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3364348 41 + 3644372 GTCAAATGGCTTCATTTTAGTGTTCTATAAAGAATGAGTAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3318041 41 - 10304083 GTCAAATGGCTTCATTTTAGTGTTCTATAAAGAATGAGTAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3402316 41 - 107702431 GTCAAATGGCTTAATTTTAGTGTTCTATAAAGAATGAGTAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 922784 41 + 1565135 GTCAAATGGCTTCATTTTAGTGTTCTATAAAGAATGAGTAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3308698 41 - 13651311 GTCAAATGGCTTAATTTTAGTGTTCTATAAAGAATGAGTAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3393707 41 - 108792865 ATCAAATGGCCGAATTTTAGTCTTCCATAGAGAATGAGTAG i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 542797 41 + 5243153 ATCAAATGGCTGAATTTTAGTCTTCCATAGAGGATGAGTAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1871868 41 - 1938448 ATCAAATGGCCGAATTTTAGTCTTCCATAGAGAATGAGTAG i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 910681 41 + 1238772 ATCAAATAGCTTAATTTTAGGGTTCCATAAAGAGTAAGTAG i proCoq1.NW_012151163v1 C 0 I 1433 s otoGar3.GL873658 2481859 33 + 5252280 ATCAAATAAATTAATTGT--------ATAAAGAGTAAGCAG i otoGar3.GL873658 C 0 I 17 s dasNov3.JH580157 491655 41 + 2232271 ATCAAATAGCTTGATTTTAGGCATCAGTATAGAGTAAAGAG i dasNov3.JH580157 C 0 C 0 a score=46586.000000 s hg38.chr2_KI270769v1_alt 1857 10 + 120616 --------------CTCAGTCTTC-- s panTro5.chr2A 3439242 10 + 111504155 --------------CTGAGTCTTC-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3326015 10 + 114371477 --------------CTGAGTCTTC-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 199371 10 + 637652 --------------ctgagtcttc-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2999063 10 + 81552678 --------------ctgagtcttc-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3256926 10 + 108979918 --------------CTAAGTCTCC-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4970164 10 - 111193037 --------------CTAAGTCTCC-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3364389 10 + 3644372 --------------CTAAGTCTCC-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3318082 10 - 10304083 --------------CTAAGTCTCC-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3402357 10 - 107702431 --------------CTAAGTCTCC-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 922825 10 + 1565135 --------------CTAAGTCTCC-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3308739 10 - 13651311 --------------CTAAGTCTCC-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3393748 10 - 108792865 --------------CGGCGCCTTC-- i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 542838 8 + 5243153 --------------CGGAGCCT---- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1871909 10 - 1938448 --------------CGGAGCCTTC-- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2481909 10 + 5252280 --------------CAAAGAACTT-- i otoGar3.GL873658 I 17 I 2 s dasNov3.JH580157 491696 26 + 2232271 AGTGTTTGGGGGAGCAAAGAGCCCTT i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 910722 1433 + 1238772 I a score=1511568.000000 s hg38.chr2_KI270769v1_alt 1867 135 + 120616 TCCAGGGTCCCAGAAGTTGCCTGATACGTAGACATATCCCTGATCAGTATGTGAGCTtaggaa-gagccttgaattagaagaattggtttcaaattgttggtttgccaataacctgtgtaacctaaggg-aattcat s panTro5.chr2A 3439252 135 + 111504155 TCCAGGGTCCCAGAAGTTGCCTGATACGTAGACATATCCCTGATCAGTATGtgagcttagaaa-gagccttgaattagaagaattggtttcaaattgttgctttgccaataacctgtgtaacctaaggg-aatttat i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3326025 135 + 114371477 TCCAGGGTCCCAGAAGTTGCCTGATACGTAGACATATCCCTGATCAGTATGtgagcttagaaa-gagccttgaattagaagaattggtttcaaattgttgctttgccaataacctgtgtaacctaaggg-aatttat i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 199381 135 + 637652 tccagggtccCAGAAGTTGCCTGATACGTAGACATATCCCTGATcagtatgtgagcttaggaa-gagccttgaattagaagaattggtttcaaattgttgctttgccaataacctgtgtaacctaaggg-aattcat i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2999073 135 + 81552678 tccagggtccCAGAAGTTGCCTGATATATGGACATATCCCTGATCAGTATGTGAGCTTaggaa-gagctttgaattagaagaattggtttcaaattgttgctttgccaataacctgtgtaacctaaggg-aattcat i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3256936 135 + 108979918 TCCAGGGTCCCAGAAGTTGCCTGATACGTAGACATATCCCTGATCAGTATGTGAACTtagaaa-gagtcttgaattggaagaattggtttcaaattgttgctttgccaataacctgtgtaacgtaaggg-aattcat i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4970174 135 - 111193037 TCCAGGGTCCCAGAAGTTGCCTGATACGTAGACATATCCCTGATCAGTATGTGAACTtagaaa-gagtcttgaattggaagaattggtttcaaattgttgttttgccaataacctgtgtaacgtaaggg-aattcat i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3364399 135 + 3644372 TCCAGGGTCCCAGAAGTTGCCTGATACGTAGACATATCCCTGATCAGTATGTGAACTtagaaa-gagtcttgaattggaagaattggtttcaaattgttgctttgccaataacctgtgtaacgtaaggg-aattcat i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3318092 135 - 10304083 TCCAGGGTCCCAGAAGTTGCCTGATACGTACACATATCCCTGATCAGTATGTGAACTtaggaa-gagtcttgaattggaagaattggtttcaaattgttgctttgccaataacctgtgtaacgtaaggg-aattcat i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3402367 135 - 107702431 TCCAGGGTCCCAGAAGTTGCCTGATACGTAGACATATCCCTGGTcagtgtgtgaacttaggaa-gagtcttgaattggaagaattggtttcaaattgttgctttgccaataacctgtgtaacgtaaggg-aattcat i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 922835 135 + 1565135 TCCAGGGTCCCAGAAGTTGCCTGATACGTAGACATATCCCTGATCAGTATGTGAACTtaggaa-gagtcttgaattggaagaattggtttcagattgttgctttgccaataacctgtgtaacgtaaggg-aattcat i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3308749 135 - 13651311 TCCAGGGTCCCAGAAGTTGCCTGATACATGGACATATCCCTGATCAGTATGTGAACTtaggaa-aagccttgaattagaagaattggtttcaaattgttgctttgccaataacctgtgtaacgtaaggg-aattcat i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3393758 136 - 108792865 TCCAGGGTCCCAGAAGTTGCCTGATGCATGGACATATCCCTGATCAGTACGTGAACTtaggaa-gagccttgaatgagaagaactggtttgaaattgttgctttgccaataacctgtgtaacctaagggttattcat i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 542846 114 + 5243153 ---------------------TGATGCATGGACATATACCCGATCAGTACGTGAACTtaggaa-gagccttgaattagaagaactggtttcaaattgttgctttgccaataacctgtgtaacctaaggg-ggttcat i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1871919 135 - 1938448 TCCAGGGTCCTGGAAGTTGCCTGATGCATGGACATATCCCTGATCAGTACGTGAACTtaggaa-gagccttgaattagaagaattggtttcaaattgttgctttgccaataacctgtgtaacctaaggg-gattcat i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 912155 136 + 1238772 TCCAGGGCCCCAGAAATTGCCTGATATGTAGACATTCTTCTGTTCAATACGTGAACATACAAAGAAACcttgaattaggataactggttccaaattcttgctttgtcaataacctgtgtaacccagggg-aattcat i proCoq1.NW_012151163v1 I 1433 I 529 s otoGar3.GL873658 2481921 131 + 5252280 TCAGGGGTCCCAGAAATTGCCTGAGGTGTAGACATTCTTGTGACTAGTCTGaaaacata-----gaatcttgaatcaggatgatggttttcaaattctttgtttgccagtaacctccgtaacctcaggg-aattcat i otoGar3.GL873658 I 2 C 0 s dasNov3.JH580157 491722 131 + 2232271 TCCCATGCCCCAGAAATTGCCTG----TTAGACATTTCCCTGATcagtctatgcacatggaaa-gaattttgaattaggaaatttaatttcagattcttcttttaccggtatcctgagtgacctaggga-aagtcat i dasNov3.JH580157 C 0 C 0 a score=4020766.000000 s hg38.chr2_KI270769v1_alt 2002 443 + 120616 tgaacatctgtggctctattttcttctctgtaaaatgaaaggtttTGGTAAGTCTGTCAGTTACGCTGT-AGGTTCAGC--TGCATTAACAAAGAAAGCCAAAGGTATGGTGGCTGGAAT---AGGATACATGTTTATTTCCAGGTGGTAGAACACTTTGGAGATATGTGG----GCCAGCACTGTGGATTGACTCTACCTTCCTCAACCAA-GTCCAGGAAGCTTTTT--CCCATTGCTGTCttccagccatctggaa-gagggagagg--ctggagagc--------tctgcagtattccttttatgatacgtcatctggaagacagt--------gt---gtccactcacatcccactacctagggtttagtcacttggccacaccaagatgcaaggaaggctgaaa---at--agtctttaggtaggcgaccatgtgctcaggcaaaacc--aaagttctgttactagaagaaggggaggg s panTro5.chr2A 3439387 443 + 111504155 tgaacatctgtggctctattttcttctctgtaaaatgaaaggtttTGGTAAGTCtgtcagttaggctgt-aggttcagc--tgcattaacaaagaaagccaaaggtatggtggctggaat---aggatacatgtttatttccaggtggtagaacactttggagatatgtgg----gccagcactgtggattgactctaccttcgtcaACCAA-GTCCAGGAAGCTTTTT--CCCATTGCTGTCttccagccatctggaa-gagggagagg--ctggagagc--------tctgcagtattccttttatgatacgtcatctggaagacagt--------gt---gtccactcacatcccactacctagggtttagtcacttggccacaccaagatgcaaggaaggctgaaa---at--agtctttaggtaggcgaccatgtgctcaggcaaaacc--gaagttctgttactagaagaaggggaggg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3326160 443 + 114371477 tgaacatctgtggctctattttcttctctgtaaaatgaaaggtttTGGTAAGTCtgtcagttaggctgt-aggttcagc--tgcattaacaaagaaagccaaaggtatggtggctggaat---aggatacatgtttatttccaggtggtagaacactttggagatatgtgg----gccagcactgtggattgactctaccttcgtcaACCAA-GTCCAGGAAGCTTTTT--CCCATTGCTGTCttccagccatctggaa-gagggagagg--ctggagagc--------tctgcagtattccttttatgatacgtcatctggaagacagt--------gt---gtccactcacatcccactacctagggtttagtcacttggccacaccaagatgcaaggaaggctgaaa---at--agtctttaggtaggcgaccatgtgctcaggcaaaacc--gaagttctgttactagaagaaggggaggg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 199516 443 + 637652 tgaacatctgtggctctattttcttctctgtaaaatgaaaggtttTGGTAAGTCtgtcagttaggctgt-aggttcagc--tgcattaacaaagaaagccaaaggtatggtggctcaaat---aggatacatgtttatttcCAGGTGGTAGGACACTTTGGAGATATGTGG----GCCAGCACTGTGGATTGACTCTACCTTCCTCAACCAA-GTCCAGGAAGCTTTTT--CCCATTGCTGTCttccagccatctggaa-gagagagagg--ctggagagc--------tctgcagtattccttttatgatacgtcatctggaagacagt--------gt---gtccactcccatcccactacctagggtttagtcacttggccacaccaagatgcaaggaaggcggaaa---at--agtctttaggtaggcgaccatgtgctcaggcaaaacc--gaagttctgttactagaagaaggggaggg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2999208 443 + 81552678 tgaacatctgtggctctattttcttctctgtaaaatgaaaggtttTGGTAAGTCtgtcagttaggctgt-aggctcagc--tgcattaacaaagaaagccaaaggtatggtggctggaat---agaatacatctttatttccaggtggtagaacactttggagatatgtcg----gccagcgctgtggattgactctaccttcctcagCCAA-GTCCAGGAAGCTTTTT--CCCATTGCTGTCttccagccatctggaa-gagggagagg--ctggagagc--------tctgcagtagtccttttacgatacatcatctggaagacagt--------gt---gtccactcacatcccactacctagggtttagtcacttggccacaccaagatgcaaggaaggctgaaa---at--agtctttaggtaggcggccatgtgctcaggcaaaact--gaagttcagttactagaagaaggggaggg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3257071 441 + 108979918 tgaacatctgtggctctattttcttctctgtaaaatgAAAGGTTTTGGTAAGTCTGTCAGTCAGGCTGT-AGGCTCAGC--TGCATTAACAAAGCAAGGCAAAGGTACGGTGGCTGGAAT---GGGATCCCTGTTTATTTCAGGGTGGTGGAACACTTTGGAGATA--TGA----ACTAGCCCTGTGGATTGGCTCCACCTTCCTCAACCAA-GTCCAGGAAGCGTTTT--CCCATTGCTGTCttccagctatcgggaa-gagggaaagg--ctggagagc--------tctgcagtattccttttacgatgcgtcatctggaagacaat--------gt---gtccactcgcatcccactgcctaggatttagtcacttggccacaccaagctgcaagaaaggctgaaa---at--agtctttaggtaaggggtcatgttcccaggcaaaacc--gaagttctgttactagaagaaggggaggg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4970309 441 - 111193037 tgaacatctgtggctctattttcttctctgtaaaatgAAAGGTTTTGGTAAGTCTGTCAGTCAGGCTGT-AGGCTCAGC--TGCATTAACAAAGCAAGGCAAAGGTACGGTGGCTGGAAT---GGGATCCCTGTTTATTTCAGGGTGGTGGAACACTTTGGAGATA--TGA----ACTAGCCCTGTGGATTGGCTCCACCTTCCTCAACCAA-GTCCAGGAAGCGTTTT--CCCATTGCTGTCttccagctatcgggaa-gagggaaagg--ctggagagc--------tctgcagtattccttttacgatgcgtcatctggaagacaat--------gt---gtccactcacatcccactgcctaggatttagtcacttggccacaccaagctgcaagaaaggctgaaa---at--agtctttaggtaaggggtcatgttcccaggcaaaacc--gaagttctgttactagaagaaggggaggg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3364534 441 + 3644372 tgaacatctgtggctctattttcttctctgtaaaatgAAAGGTTTTGGTAAGTCTGTCAGTCAGGCTGT-AGGCTCAGC--TGCATTAACAAAGCAAGGCAAAGGTACGGTGGCTGGAAT---GGGATCCCTGTTTATTTCAGGGTGGTGGAACACTTTGGAGATA--TGA----ACTAGCCCTGTGGATTGGCTCCACCTTCCTCAACCAA-GTCCAGGAAGCGTTTT--CCCATTGCTGTCttccagctatctggaa-gagggaaagg--ctggagagc--------tctgcagtattccttttacgatgcgtcatctgaaagacaat--------gt---gtccactcacatcccactgcctaggatttagtcacttggccacaccaagctgcaagaaaggctgaaa---at--agtctttaggtaagggatcatgttcccaggcaaaacc--gaagttctgttactagaagaaggggaggg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3318227 441 - 10304083 tgaacatctgtggctctattttcttctctgtaaaatgaaaggtttTGGTAAGTCTGTCAGTCAGGCTGT-AGGCTCAGC--TGCATTAACAAAGCAAGGCAAAGGTACGGTGACTGGAAT---GGGATCCCTGTTTATTTCAGGGTGGTGGAACACTTTGGAGATA--CGA----ACCAGCGCTGTAGATTGGCTCCACCTTCCTCAACCAA-GTCCAGGAAGCGTTTT--CCCATTGCTGTCttccagctatctggaa-gagggaaagg--ctggagagc--------tctgcagtgttccttttacgatgcgtcatctggaagacaat--------gt---gtccactcacatcccactgcctagggtttagtcacttggccacaccaagctgcaagaaaggctgaaa---at--agtctttaggtaaggggtcatgtgcccaggcaaaacc--gaagttctgttactagaagacggggaggg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3402502 443 - 107702431 tgaacatctgtggctctattttcttctctgtaaaatgAAAGGTTTTGGTAAGTCTGTCAGTCAGGCTGT-AGGCTCAGC--TGCATTAACAAAGCAAGGCAAAGGTACGGTGGCTGGAAT---GGGATCCCTGTTTATTTCAGGGTGGTGGAACACTTTGGAGATATGTGA----GCCAGCGCTGTGGATTGGCTCCACCTTCCTCAACCAA-GTCTAGGAAGCGTTTT--CCCATTGCTGTCttccagctatctggaa-gagggagagg--ctggagagc--------tctgtagtattccttttacgatgcatcatctggaagacagt--------gt---gtccactcacatcccactgcctagggtttagtcacttggccacaccaagctgcaagaaaggctgaaa---at--agtctttaggtaaggggtcatgtgcccaggcaaaacc--gaagttctgttactagaagaaggggaggg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 922970 441 + 1565135 tgaacatctgtggctctattttcttctctgtaaaatgaaaggtttTGGTAAGTCTGTCAGTCAGGCTGT-AGGCTCAGC--TGCATTAACAAAGCAAGGCAAAGGTACGGTGGCTGGAAT---GGGATCCCTGTTTATTTCAGGGTGGTGGAACACTCTGGAGATA--CGA----ACCAGCGCTGTAGATTGGCGCCACCTTCCTCAACCAA-GTCCAGGAAGCGTTTT--CCCATTGCTGTCttccagctatctggaa-gagggaaagg--ctggagagc--------tctgcagtattccttttacgatgcgtcatctggaagacagt--------gt---gtccactcacatcccactgcctagggtttagtcacttggccacaccaagctgcaagaaaggctgaaa---at--agtctttaggtaaggggtcatgtgcccaggcaaaacc--gaagttctgttactagaagaaggggaggg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3308884 439 - 13651311 tgaacatttgtggctccattttcttctctgtaaagtgaaaggtttTGGTAAGTCTGTCAGTCAGGCTGT-AGGCTCAGC--TGCATTAACAAAGCAAGGCAAAGGTACGGTGGCTGGAAT---AGGATCCATGTTTATTTCAGGGTGGTGGAACACTTTGGAGATATGTGA----GCCAGCGCTGTGGATTGG-TCCACCTTCCTCAACCAA-GTCCAGGAAGCGTTTT--CCCATTGCTGTCTTCCAGCTATCTGGAA-GAGGGAGAGG--CTGGAGAGC--------TCTGCAGTATTCCTTTTACCATGCATCATCTGGAAAACAGT--------GT---Gtccactcacatcccactgcctagggtttagtcacttggccacaccaagctgcaagaaaggctggaa---at--agtctttgggtaaggggttatatgcccaggcaaaact--gaagtcctgttactagaa---ggggaggg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3393894 441 - 108792865 tgaa------tggctctattttcttatctgtaaaatggAAGGTTTTGGTGAGTCTGTCAC-----CTGT-ATGCTAAGC--TGCATTAACAGAGAAAGCCAGAGATCCGGTGGCTGGAAT---AGGGTACAGGTTTATTTCTGGGTGGTAGAATGCT-TGGAGATCTGTGG----ACCCGTGCTGTGGATTGACACCACCTTCCTCAACCAA-GTCCGGGAAG-GTTTT--GCCATTGCTATCTTCTAGCCATCAGGAAGGAGGGAGAGG--CTGGAAATCTCTGGGGTTCTGGAGAGTTCCTTTCACCATGCATTAcctggaagacagt--------gt---gtccgttcacatcccgctgcctaggctttagtcacctggccacaccaacatgcaaggaaggctggaa---gtagagtctttaggtaggcggccatgtgcccaggcaaaacc--gaagttctgttactagaagaaggggaggg i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 542960 450 + 5243153 tgaacatctgtggctctattttcttatctgtaaaatggAAGGTTTTGGTGAGTCTGTCACTTAGGCTGT-GCGCTAAGC--TGCACTAACAAAGAAGGCCAGAGGTCCACTGGCTGGAGT---AGGGTACAGGTTTATTTCCGGGTGGTAGAACAC--TGGAGATCTGTGG----ACCCATGCTGTGGG-TGAGTCCACCTTCCTCAACCAA-GTCCAGGAAG-TTTTT--GCCATTGCTATCTTCCAGCCGTCTGGAAGGAGGGAGAGG--CTGGAGAGCTCTGGGGTTCTGGAGTGTTCCTTTCACCATGCGTTATCTGGAAGACAGT--------GT---Gtccgttcacatcccgctgcctagggtatagtcacctgcccacaccaagatgcaaggaaggctggaa---gtagagtctttaggtaggcggccatgtgcccaggcaaaacc--gaagttctgttactagaagaaggggaggg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1872054 451 - 1938448 tgaacatctgtggctctattttcttatctgtaaaatggAAGGTTTTGGTGAGTCTGTCACTTAGGCTGT-ACGCTAAGC--TTCACTAACAAAGAAAGCCAGAGGTCTGGTGGCTGGAGT---AGGGTACAGGTTTATTTCCGGGTGGTAGAACATTCTGGAGATCTGTGG----ACCCATGCTGTGGGTTGACTCCACCTTCCTCAACCAA-GTCCAGGAAG-TTTTT--GCCGTTGCTATCTTCCAGCCATCTGGAAGGACGGAGAGG--CTGGAAAGCTCTGGGGTTCTGGAGTGTTCCTTTCACCATGCGTTATCTGGAAGacagc--------at---gtccgttcacattccgctgcctag--cgtagtcacctggccacaccaagatgcaagggaggctggaa---gtagagtctttaggtaggtggccatgtgcccaggcaaaacc--gaagttctgttactagaagaaggggaggg i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2482052 421 + 5252280 tgaacatctgtggcctaggtttcttctctgtaaaatgaaggggtttgaTG----TGTTGGTCAGAATGTGGGGATCGGCTTTGTACTAATAAGGAAAGGCCGAGGCCTG--GGCTGGAGCCGGGGAGGCACCGTTTCCCTGCGGGTGGTGG------CCAGCGGTG--TGC----GGCCGGCCTGCAGCAGGTCTGCTCCT----------A-GGCCAGGGAGTGTCTC--CC---------CTTCTTCTCATGAGGAG-GAGGGAAAGA--CTGGGGAGC--------ACAGCAGTGTTCCTTCTGCAGTGCTTCCCGTGAGCGACGGA--------GTGTGGTGtgctcacatcccttgacccagaatttagtcacttggccacgctgagccacaaagaaggcaggaa---gt--agtttatggctagtcagccatgtgcccgggcaaaagtgggaagtttggttcctgaaagaaggggagag i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 491853 434 + 2232271 tcaatagctctagtttagttttcttatctgtaaaatgaatgactttgatgagtctgtc--taaggATGT-AGGCTAACC--TTCATGAACAAAGAAAGCCAAA-ATGAAATGGCTGAAAG---AGTATAGTAGTTTATTTCCCTATGG-ATAACAATGCAGAGGTCTGTGGGACAGACAGGGCCGTAGATTGGTTCCGGCATCCTGAACAAATGTCAAAGAAGCTTTTCTACCTGTTGCCATCTCCTAGCCATCAGGAA-GAGGGAATGGGCCAGGGGAGC--------T-AGCAGTA----------------TCAcctggaagtggctcatgtttcat---atccactcacatcctgtttgccaaaagttagtcatttgaccacaccaagctgcaaaagaggcaggaaaatat--agtctttagctaggccgccatgtcccca--------c--tcagttctattattaaaagaagaaaagag i dasNov3.JH580157 C 0 I 9680 e proCoq1.NW_012151163v1 912291 529 + 1238772 I a score=10035.000000 s hg38.chr2_KI270769v1_alt 2445 1 + 120616 c s panTro5.chr2A 3439830 1 + 111504155 c i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3326603 1 + 114371477 c i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 199959 1 + 637652 c i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2999651 1 + 81552678 c i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3257512 1 + 108979918 c i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4970750 1 - 111193037 c i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3364975 1 + 3644372 c i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3318668 1 - 10304083 c i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3402945 1 - 107702431 c i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 923411 1 + 1565135 c i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3309323 1 - 13651311 t i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3394335 1 - 108792865 c i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 543410 1 + 5243153 c i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1872505 1 - 1938448 c i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2482473 1 + 5252280 c i otoGar3.GL873658 C 0 I 119 e proCoq1.NW_012151163v1 912291 529 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I a score=711333.000000 s hg38.chr2_KI270769v1_alt 2446 82 + 120616 cgggcatggtggctcacacctgtaatcccagcactttgggagtccgaggtgggtggatcatgaggtcaggagatcgagacca s panTro5.chr2A 3439831 82 + 111504155 cgggcatggtggctcacacctgtaatcccagcactttgggggtccgaggtgggtggatcacgaggtcaggagatcgagacca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3326604 82 + 114371477 cgggcatggtggctcacacctgtaatcccagcactttgggggtccgaggtgggtggatcacgaggtcaggagatcgagacca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 199960 82 + 637652 cgggcatggtggctcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacgaggtcaggggatcgagacca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2999652 82 + 81552678 tggtcacggtggctcacacctgtaattccagcactttgggaggccgaggtgggtggatcacgaggtcaggagatcgagacca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3257513 82 + 108979918 caggctcggtggctcacacctgtaatcccagcactttgggaggccgaagcgggcggatcacgaggtcaggagatcgagacca i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4970751 82 - 111193037 caggctcggtggctcacacctgtaatcccagcactttgggaggccgaagcgggcggatcacgaggtcaggagatcgagacca i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3364976 82 + 3644372 caggctcggtggctcacacctgtaatcccagcactttgggaggccgaagcgggcggatcacgaggtcaggagatcgagacca i macNem1.NW_012011978v1 C 0 I 2979 s cerAty1.NW_012000820v1 3318669 82 - 10304083 caggctcggtggctcacacctgtaatcccagcactttgggaggccgaagcgggcggatcgcgaggtcaggagatcgagacca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3402946 82 - 107702431 caggctcggtggctcacacctgtaatcccagcactttgggaggccgaagcgggcggatcacgaggtcaggagatcgagacca i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 923412 82 + 1565135 caggctcggtggctcacacctgtaatcccagcactttgggaggccgaagcgggcggatcgcgaggtcaggagatcgagacca i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3309324 82 - 13651311 caggcttggtggctcacacctgtaatcccagcactttgggaagccgaagtgggtggatcacgaggtcaggagatcgagacca i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3394336 82 - 108792865 caggcacagtggctcacacctgtaatcccaacactttgggaggccaaggagggcagatcatgaggtcaggagttggagacca i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 543411 82 + 5243153 caggcacagtggctcacacatgtaatcccagcactttgggaggccaaggagggcagatcacgaggtcaggagttggagacca i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1872506 82 - 1938448 caggcacagtaactcacacctgtaatcccagcactttgggaggccaaggagggcagatcacgaggtcaggagttggagacaa i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912291 529 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I a score=1304863.000000 s hg38.chr2_KI270769v1_alt 2528 181 + 120616 ccctggctaacacggtgaaaccccatctctactaaaaatacaaaaaacagccggacgtggtggtgcacgcctgtagtcccagctacttgcgaggctgaggcaggagaatcacgtgaacccaggaagcagaggttgcagtgagctgagattgcaccattgcattccagcctgcgcaacagag s panTro5.chr2A 3439913 181 + 111504155 ccctggctaacacggtgaaaccccgtctgtactaaaaatacaaaaaatggccggacgtggtggtgcacgcctatagtcccagctacttgggaggctgaggcaggagaatcacgtgaacccgggaagcagaggttgcagtgagctgagatcgcgccattgcattccagcctgcgcaacagag i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3326686 181 + 114371477 ccctggctaacacggtgaaaccccgtctgtactaaaaatacaaaaaatggccggacgtggtggtgcacgcctatagtcccagctacttgggaggctgaggcaggagaatcacgtgaacccgggaagcagaggttgcagtgagctgagatcgcgccattgcattccagcctgcgcaacagag i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 200042 181 + 637652 ccctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaatagccggacgtggtggtgcacgcctgtagtcccagctacttgggaggctgaggcaggagaatcacgtgaacccaggaagcagaggttgcagtgagctgagatcgcgccattgcattccagcctgcacaacagag i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2999734 178 + 81552678 tcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaatagccggatgtggtggtgcacgcctgtagtcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaagcagaggttgcagtgagctgagatcgcaccattgcattccagcctgcgcaaca--- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3257595 181 + 108979918 tcctggttagcatggtgaaaccccatctctagtaaaaatacaaaaaatagccaagcgtggtggtgcacgtttgcagtcccagctacttgggaggctaaggcaggagaatcacttgaacccaggaagcagaggtggcagtgagctgagatcacaccattgcattccagcctgggcaactttg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4970833 181 - 111193037 tcctggttagcatggtgaaaccccatctctagtaaaaatacaaaaaatagccaggcgtggtggtgcacgtttgcagtcccagctacttgggaggctaaggcaggagaatcacttgaacccaggaagcagaggtggcagtgagctgagatcacaccattgcattccagcctgggcaactttg i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3318751 181 - 10304083 tcctggttagcatggtgaaaccccatctctactaaaaatacaaaaaatagccaggcgtggtggtgcacgtttgcagtcccagctacttgggaggctaaggcaggagaatcacttgaacccaggaagcagaggtggcagtgagctgagatcgcaccattgcattccagcctgggcaactttg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3403028 181 - 107702431 tcctggttagcatggtgaaaccccatctctactaaaaatacaaaaaatagccaggtgtggtggtgcacgtttgcagtcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaagcagaggtggcagtgagctgagatggcaccattgcattccagcctgggcaactttg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 923494 181 + 1565135 tcctggttagcatggtgaaaccccatctctactaaaaatacaaaaaatagccaggcgtggtggtgcacgtttgcagtcccagctacttgggaggctaaggcaggagaatcacttgaacccaggaagcagaggtggcagtgagctgagatcgcaccattgcattccagcctgggcaactttg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3309406 181 - 13651311 tcctggttaacatggtgaaaccccatctttactaaaaatacaaaaaatagccggacgtggtggtgcacacttgcagtcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaagcagaggtggcagtgagctgagatcgcaccattgcattccagcctgggcaacTTTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3394418 181 - 108792865 gcctggccaacatggtgaaatcccgtctcaactaaaaatacaaaaattagccaaatgtagtggtgtgcacctatagtcccagctacttgggaagctgaggcaggaaaatcacttgaaccccggaagcagaggttgcagtgagctgagattgtgccatcacaatccagcctgggcaacagag i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 543493 181 + 5243153 gcctggccaacatggtgaaatcccgtctcaactaaaaatacaaaaattagccaaatgtggtggcgtacgcctgtagtcccagctacttgggaggctgaggcaagaaaatcacttgaacccaggaagcagaggttgcagtgagctgaaattgtgccatcacaatccagcctgggcaacagag i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1872588 181 - 1938448 gcctggccaacatggtgaaatcctgtttcaactaaaaatacaaaaattagccaaatgtggtggcgtacgcctatagtcccagctacttgggaggctgaggcaggaaaatcacttgaactgaggaagcagaggttgcagtgagctgagactgtgccatcacagtccagcctgggcaacagag i aotNan1.NW_018507213v1 C 0 I 313 e proCoq1.NW_012151163v1 912291 529 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=7546.000000 s hg38.chr2_KI270769v1_alt 2709 2 + 120616 ca s panTro5.chr2A 3440094 2 + 111504155 ca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3326867 2 + 114371477 ca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 200223 2 + 637652 ca i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3257776 2 + 108979918 ca i rheMac8.chr13 C 0 I 14 s macFas5.chr13 4971014 2 - 111193037 ca i macFas5.chr13 C 0 I 14 s cerAty1.NW_012000820v1 3318932 2 - 10304083 ca i cerAty1.NW_012000820v1 C 0 I 14 s chlSab2.chr14 3403209 2 - 107702431 ca i chlSab2.chr14 C 0 I 14 s manLeu1.NW_012104432v1 923675 2 + 1565135 ca i manLeu1.NW_012104432v1 C 0 I 429 s colAng1.NW_012118821v1 3309587 2 - 13651311 CA i colAng1.NW_012118821v1 C 0 I 14 s calJac3.chr14 3394599 2 - 108792865 tg i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 543674 2 + 5243153 tg i cebCap1.NW_016107454v1 C 0 C 0 e proCoq1.NW_012151163v1 912291 529 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e aotNan1.NW_018507213v1 1872769 313 - 1938448 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I e nomLeu3.chr19 2999912 0 + 81552678 C a score=79020.000000 s hg38.chr2_KI270769v1_alt 2711 34 + 120616 gcactttgtctgaggt--taaaaa-----aaaaaa------------------g--------ggg-gg s panTro5.chr2A 3440096 31 + 111504155 gcactttg----aggt--taaaaa-----aaaaaa------------------a-------aggg-gg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3326869 29 + 114371477 gcactttg----aggt--taaaaa-----aaaaaa------------------a---------ag-gg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 200225 42 + 637652 gcactttgtctgaggt--taaaaa-----aaaaaa------------------GGTGGGGGGGGG-GG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2999912 32 + 81552678 --actttgtctgaggt--taaaaa-----aaaaag------------------g--------ggg-gg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3257792 41 + 108979918 acactttgtctaaagt--aaaaaa-----aaaaaa------------------a--gaagaagaaGGG i rheMac8.chr13 I 14 C 0 s macFas5.chr13 4971030 41 - 111193037 acactttgtctaaagt--aaaaaa-----aaaaaa------------------a--gaagaagaaGGG i macFas5.chr13 I 14 C 0 s cerAty1.NW_012000820v1 3318948 40 - 10304083 acactttgtctaaagt--aaaaaa-----aaaaaa------------------a--aaagaagaa-GG i cerAty1.NW_012000820v1 I 14 C 0 s chlSab2.chr14 3403225 44 - 107702431 acactttgtctaaagt--aaaaaa-----aaaaaa--------------aaaaa--gaagaagaa-gg i chlSab2.chr14 I 14 C 0 s manLeu1.NW_012104432v1 924106 38 + 1565135 acactttgtctaaagt--aaaaaa-----aaaaaa----------------------aagaagaa-GG i manLeu1.NW_012104432v1 I 429 C 0 s colAng1.NW_012118821v1 3309603 58 - 13651311 ACACTTTGTCTAAAGT--AAAAAA-----AAAAAaagaagaagaagaagaagaa--gaagaagaa-gG i colAng1.NW_012118821v1 I 14 C 0 s calJac3.chr14 3394601 34 - 108792865 ggactccgtctaaagt--aaaaaaTTTTTAAAAAG------------------A-------------- i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 543676 36 + 5243153 ggactccatctaaaataaaaaaaaaTTTTAGAAAG------------------A-------------- i cebCap1.NW_016107454v1 C 0 C 0 e proCoq1.NW_012151163v1 912291 529 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e aotNan1.NW_018507213v1 1872769 313 - 1938448 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=468872.000000 s hg38.chr2_KI270769v1_alt 2745 65 + 120616 ggagatcagagattggtg---gatggctgagagtctcctccaGTGAGTCCTTCCAGCACCAAAAGTCT s panTro5.chr2A 3440127 65 + 111504155 ggagatcagagattggtg---gatggctgagagtctcctccaGTGAGTCCTTCCAGCACCAAAAGTCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3326898 65 + 114371477 ggagatcagagattggtg---gatggctgagagtctcctccaGTGAGTCCTTCCAGCACCAAAAGTCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 200267 65 + 637652 GGAGATCAGAGATTGGTG---GATGGCTGAGAGTCTCCTCCAGTGAGTCTTTCCAGCACCAAAAGTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 2999944 65 + 81552678 ggagatcagagattggtg---gatggctgagagtctcctccaGTGAGTCCTTCCAGCACCAAAAGTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3257833 68 + 108979918 GGAGATCAAAGATTGGTGGATGATGGCTGAGAGTCTCCTCCAGTGAGTCCTTCCAGCACCAAAAATCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4971071 68 - 111193037 GGAGATCAAAGATTGGTGGATGATGGCTGAGAGTCTCCTCCAGTGAGTCCTTCCAGCACCAAAAATCT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3318988 68 - 10304083 GGAGATCAAAGATTGGTGGATGATGGCTGAGAGTCTCCTCCAGTGAGTCCTTCCAGCACCAAAAATCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3403269 65 - 107702431 ggagatcaaagattggtg---gatggctgagagtctcctccaGTGAGTCCTTCCAGCACCAAAAATCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 924144 68 + 1565135 GGAGATCAAAGATTGGTGGATGATGGCTGAGAGTCTCCTCCAGTGAGTCCTTCCAGCACCAAAAATCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3309661 65 - 13651311 GGAGATCAGAGATTGGTG---GATGGCTGAGAGTCTCCTCCAGTGAGTCCTTCCAGCACCAAAAATCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3394635 63 - 108792865 GGAGATCAGAGA-TGGTG---GATGGCTGAGAGTCTCCTCCCATGAGTCC-TCCGGCACCAAAGTCTC i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 543712 63 + 5243153 GGAGATCAGAGA-TGGTG---GATGGCTGAGAGTCT-CTCCAGTGAGTCCTTCCGTAACCAAAGTCTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1873082 64 - 1938448 GGAGATCAGAGA-TGGTG---GATGGCTGAGAGTCTCCTCCAGTGAGTCCTTCCAGCACCAAAGTCTC i aotNan1.NW_018507213v1 I 313 C 0 e proCoq1.NW_012151163v1 912291 529 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=770472.000000 s hg38.chr2_KI270769v1_alt 2810 98 + 120616 TGAATCTGGAATCCATAATTACTGCCAGCCTTGAGCCTTTGCTGATAACTGAATTCCCACTGCTGCGTATG-TAAGAATTATCCAgcttgtaagtaggt s panTro5.chr2A 3440192 98 + 111504155 TGAATCTGGAATCCATAATTACTGCCAGCCTTGAGCCTTTGCTGATAACTGAATTCCCACTGCTGCGTATG-TAAGAATTATCCAGCTTGTAAGTAGGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3326963 98 + 114371477 TGAATCTGGAATCCATAATTACTGCCAGCCTTGAGCCTTTGCTGATAACTGAATTCCCACTGCTGCGTATG-TAAGAATTATCCAgcttgtaagtaggt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 200332 98 + 637652 TGAATCTGGAATCCATAATTACTGCCAGCCTTGAGCCTTTGCTGATAACTGAATTCCCACTGCTGTGTATG-TAAGAATTATCCAGCTTGTAAGTAGGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3000009 98 + 81552678 TGAATCTGGAATCCATAGTTACTGCCAGCCTTGAGCCTTTGCTGATAACTAAATTCCCACTGCTGTGTATA-TAAGAATTATCCAgcttgtaagtagtt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3257901 98 + 108979918 TGAATCTAGAATCCATAATTACTGCCAGCCTTGAGCCTTTGCTGTTAACTAAATTCCCACTGCTGCATATA-TAAGAATTATCCAGGTTGTAAGTACGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4971139 98 - 111193037 TGAATCTAGAATCCATAATTACTGCCAGCCTTGAGCCTTTGCTGTTAACTAAATTCCCACTGCTGCATATA-TAAGAATTATCCAGGTTGTAAGTACGT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3319056 98 - 10304083 TGAATCTAGAATCCATAATTACTGCCAGCCTTGAGCCTTTGCTGTTAACTAAATTCCCACTGCTGCATATG-TAAGAATTATCCAGGTTGTAAGTACGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3403334 98 - 107702431 TGAATCTAGAATCCGTAATTACTGCCAGCCTTGAGCCTTTGCTGTTAACTAAATTCCCACTGCTGCATATA-TAAGAATTATCCAGGTTGTAAGTACGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 924212 98 + 1565135 TGAATCTAGAATCCATAATTACTGCCAGCCTTGAGCCTTTGCTGTTAACTAAATTCCCACTGCTGCATATG-TAAGAATTATCCAGGTTGTAAGTACGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3309726 98 - 13651311 TGAATCTAGAATCCGTAATTACTGCCAGCCTTGAGCCTTTGCTATTAACTGAATTCCCACTGCTGAGTATA-TAAGAATTATCCAGCTTGTAAGTATGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3394698 94 - 108792865 TAAATCTGGAATCCATAATTACTGCCAGTCTTCAGCCATTGCTGAT-----AATTCCCATTGCTGTGTGTGTTAACAATTATCCAGCTTGTAAGTAGGT i calJac3.chr14 C 0 I 317 s cebCap1.NW_016107454v1 543775 94 + 5243153 TGAATCTGGAATCCATAATTACTGCCAGCCTTGAGCCATTGCTGAT-----AATTCCCACTGCTGTGTATATTAACAATTATCCAGCTTGTAAGTAGGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1873146 94 - 1938448 TGAATCTGGAATCCGTAATTACTGCCAGCCTTGAGCCATCGCTGAT-----AATTCCCACTGCTCTGTATATTAACAATTATCCAGCTTGTAAGTAGGT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 912820 96 + 1238772 TGAATCTGCAATCCATAATTACAGCCAGCTTTGAATCATTACTGGCAGCTAAA--CCCCCTGCTACATATA-CAGGAATTATCTAgcttgtaagtaggt i proCoq1.NW_012151163v1 I 529 C 0 e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=21285.000000 s hg38.chr2_KI270769v1_alt 2908 3 + 120616 tcg s panTro5.chr2A 3440290 3 + 111504155 TCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327061 3 + 114371477 tcg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 200430 3 + 637652 TCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3000107 3 + 81552678 tcg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3257999 3 + 108979918 TCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4971237 3 - 111193037 TCA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3319154 3 - 10304083 TCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3403432 3 - 107702431 TCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 924310 3 + 1565135 TCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3309824 3 - 13651311 TCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3395109 3 - 108792865 TCA i calJac3.chr14 I 317 C 0 s cebCap1.NW_016107454v1 543869 3 + 5243153 TCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1873240 3 - 1938448 TCA i aotNan1.NW_018507213v1 C 0 I 284 s proCoq1.NW_012151163v1 912916 3 + 1238772 tcc i proCoq1.NW_012151163v1 C 0 C 0 e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=111254.000000 s hg38.chr2_KI270769v1_alt 2911 13 + 120616 aaacccattttct s panTro5.chr2A 3440293 13 + 111504155 AAACCCATTTTCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327064 13 + 114371477 aaacccattttct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 200433 13 + 637652 AAACCCATTTTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3000110 13 + 81552678 aaacccattttct i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258002 13 + 108979918 AAACCCATTTTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4971240 13 - 111193037 AAACCCATTTTCT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3319157 12 - 10304083 AAACCCATTTTC- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3403435 13 - 107702431 AAACCCATTTTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 924313 13 + 1565135 AAACCCATTTTCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3309827 13 - 13651311 AAACTCATTTTCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3395112 13 - 108792865 AAATCCATTTTCT i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 543872 13 + 5243153 AAATCCATGttct i cebCap1.NW_016107454v1 C 0 I 1510 s aotNan1.NW_018507213v1 1873527 13 - 1938448 AAATCCATTTTCT i aotNan1.NW_018507213v1 I 284 C 0 s proCoq1.NW_012151163v1 912919 13 + 1238772 aaacccattttct i proCoq1.NW_012151163v1 C 0 C 0 e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=359919.000000 s hg38.chr2_KI270769v1_alt 2924 49 + 120616 agtaaattatgttataaatcgtaggggagtttttagaataaaccacaaa s panTro5.chr2A 3440306 49 + 111504155 AGTAAATTATGTTATAAATCGTAGGGGAGTTTTTAGAATAAACCACAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327077 49 + 114371477 agtaaattatgttataaatcgtaggggagtttttagaataaaccacaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 200446 49 + 637652 AGTCAATTATGTTATAAATCGTAGGGGAGTTTTTAGAATAAACCACAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3000123 49 + 81552678 agtaaattatgttataaatcgtaggtgagtttttagaataaaccacaaa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258015 49 + 108979918 AGTAAATTATGTTATAAATCGTAGGTGACTTTTTAGAATAAAGCACAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4971253 49 - 111193037 AGTAAATTATGTTATAAATCGTAGGTGAGTTTTTAGAATAAAGCACAAA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3319169 42 - 10304083 -------TATGTTACAAATCGTAGGTGAGTTTTTAGAATAAAGCACAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3403448 49 - 107702431 AGTAAATTATGTTGTAAATCGTAGGTGAGTTTTTAGAATAAAGCACAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 924326 49 + 1565135 AGTAAATTATGTTACAAATCGTAGGTGAGTTTTTAGAATAAAGCACAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3309840 49 - 13651311 AGTAAATTATATTATAAATTGTAGGTGAGTTTTTAGAATAAACCACAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3395125 49 - 108792865 AGTAAATTATGTTATAAATCGTAGGTGAGTTTTTAGAATAAACCACAAA i calJac3.chr14 C 0 C 0 s aotNan1.NW_018507213v1 1873540 49 - 1938448 AGTAAATTATGTTGTAAATCGTAGGTGAGTTTTTAGAATAAACCACAAA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 912932 49 + 1238772 agtaaattattttataaattgtaggtaggtttttagactaagccacaaa i proCoq1.NW_012151163v1 C 0 I 3193 e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e cebCap1.NW_016107454v1 543885 1510 + 5243153 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=4300543.000000 s hg38.chr2_KI270769v1_alt 2973 729 + 120616 -gggctctctaGGTGGAACTTATTATAAAGAGATAATGTTGTATATTCTGTC-TCTCACACACACACTCAC----ACTCTATCCTGTTATTAGTAATTTAGCAAAATAA---TGTTGGGAAAGCatatttgagtacagtcttttttgtggatatattttcgtttctcttgggtaaaaacttaatagtatactttctggggcttacgataaatgtgcatttagctctataagaaatagaacagtttccaaagtgggcacagtatttcatgtttccgtcagcagcgtat----gagagttccaattattttgtatccatggtatagtcaacttttttcgatttttgcatttctctgatgactgaggttatatagactacttgatacaaaggatctcatgtattaatcctttg---atatgtagacggtttgtatatctttatagagcatctcttcaaacgttttctccatctttcaaacttcggatgtttgtcttattgttactgtgttttaagaattctgtaaatatcctggttggaaatgagc--tatcatacacaatagatgtgttgcaat-ttttttttttttt-----------actattctatgtcttgtttttgcaatttcttaggtgtcttttgaagggcagaaattttaattttgGGGtgcaggtatactagctacagattctcgcagcttttattagtttcaaaattattacttt--tttttttttttt----ttttt-----gagacagaatcttgctctg s panTro5.chr2A 3440355 726 + 111504155 -GGGCTCTCTAGGTGGAACTTATTATAAAGAGATAATGT---ATATTCTGTC-TCTCACACACACACTCAC----ACTCTATCCTGTTATTAGTAATTTAGCAAAATAAGAATGTTGGGAAAGCatatttgagtacagtcttttgtgtggatatattttcgtttctcttgggtaaaaacttaatagtatactttctggggcttacgataaatgtgcatttagctctataagaaatagaacagtttccaaagtgggcacagtatttcatgtttccgtcagcaacgtat----gagagttccaa-------atatccatgatatagtcaacttttttagatttttgcatttctctgatgactgaggttatataggctacttgatacaaaggatctcatatattaatcctttg---atatgtagacgatttgtatatctttataaagtatctcttcaaatgttttctccatctttcaaactttggatgtttgtcttattgttactgtgttttaagaattctgtaaatatcctggttggaaatgagc--tatcatacacaatagatgtgttgcaat-tttttttttttt------------actattctgtgccttgtttttgcaatttcttaggtgtcttttgaagggcagaaattttaattttgGGGtgcaggtgtactagctacagattgttgcagcttttattagtttcaaaattattacttt--tttttttttttt----ttttttttttgagacagactcttgctctg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327126 713 + 114371477 -gggctctctaGGTGGAACTTATTATAAAGAGATAATGTTGTATATTCTGTC-TCTCACACACACACTCAC----ACTCTATCCTGTTATTAGTAATTTAGCAAAATAAGAATGTTGAGAAAGCatatttgagtacagtcttttgtgtggatatattttcgtttctcttgggtaaaaacttaatagtatactttctggggcttacgataaatgtgcatttagctctataagaaatagaacagtttccaaagtgggcacagtatttcatgtttccgtcagcaacgtat----gagagttccaa-------atatccatgatatagtcaacttttttagatttttgcatttctctgatgactgaggttatataggctacttgatacaaaggatgtcatatattaatcctttg---atatgtagatgatttgtatatctttataaagtatctcttcaaatgttttctccatctttcaaactttggatgtttgtcttattgttactgtgttttaagaattctgtaaatatcctggttggaaatgagc--tatcatacacaatagatgtgttgcaat-ttttttttttttt-----------actattctgtgccttgtttttgcaatttcttaggtgtcttttgaagggcagaaattttaattttgGGGtgcaggtgtactagctacagattgtcgcagcttttattagtttcaaaattattacttt--ttttt---------------------gagacagaatcttgctctg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 200495 729 + 637652 -GGGCTCTTTAGGTGGAACTTATTATAAAGAGATAATGTTGTATATTCTGTC-TCTCACACACACACTCAC----ACTCTATCCTGTTAATAGTAATTTAGCAAAATAAGAATGTTGGGAAAGCatatttgagtacagtcttttttgtggatatatttttgtttctcttgggtaaaaacttaatagtatactttctggggcttatgataaatgtgcatttagctctataagaaatagaacagtttccaaagtgggcacagtatttcatgtttccgtcagcaacgtat----gagagttccaattattttatatccatggtatagtcaacttttttcgatttttgcatttctctgatgactgaggttatataggctacttgatacgaaggatctcatatattaatcctttg---atatgtagacgatttgtatatctttataaagtatctcttcaaatgttttctccatctttcaaactttggatgtttgtcttattgttactgtgttttaagaattctgtaaatatcctggttggaaatgagc--tatcatacacaatagatgtgttgcaat-tttttttttt--------------actattctgtgccttgtttttgcaatttcttaggtgtcttttgaagggcagaaattttaattttgGGGtgcaggtgtactagctacagattctcgcagcttttattagtttcaaaattattacttt--tttttttttttt----ttttt-----gagacagaatcttgctctg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3000172 738 + 81552678 -ggactctctaGGTGGAACTTACTATAGAGAGATAATGTTGTATATTCTGTCAACTCACACACACACTCAC----ACTCTATCCTGTTATTAGTAATTTAGCAAAATAAGAATGTTGGGAAAGCatatttgagtacagtcttttgtgtggatatatttttgtttctcttgggtaaaaacttagtagtatacttgctggggcttatgataaatgtgcatttagctctataagaaatggaacagtttccagagtgggcgcaatatttcacattttcatcagcaacatat----gagagttccaattattttatatccatggtatagtcaactttttttgatttttgcatttctctgatgactgaggttgtatagactacttgatacataggatctgatatattaatcctttg---atatatagtctatttgtatatctttataaagtatctcttcaaatgttttctccatctttcaaactttggatgtttgtcttattgtcactgtgttttaagaattctgtaaatatcctggttggaaatgagc--tatcatacacaatagatgtgttgcaat-tttttttttttttttttttttttaactgttctatgccttgtttttgcattttcttaggtgtcttttgaagggcagaaactttaattttggggtgcaggtgtactagctacagattctctcagcttttattagtttcaaaattactacttt--ttttttttttt---------------gagacagaatcttgctgtg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258064 738 + 108979918 -GGGCTCTCTAGGTGGAACTTATTATAGAGAGAGAATGTTGTATATTCTGTC-TCTCACACACACACTCACACATACTCTCTCCTGGTGTTAGTAATTTAGC-AAATGAGAATGTTGGGAAAGCGTATTTGAGCACagtcgtttgtgtggatatattttcgtttctcttgggtaaaaacttactagcatactttctggggtttatgataagtgtgcatttcgttctataagaaatagaacagtttccaaagtgggcacactatttcacatttccatcagcagcccat----gagagttccaattcttttatatccatggtatcatcaacttttttcgatttttgcatttctctgatgactgaggttaaacaggctacttgatacgtaggatctgacctattaatcctttgattatatataggctatttgtatatctttataaagtatctcttcagatgttttctccatccttcagactgtggatatttgtcttattgttactgtgttttaagagttctgtaaatatcctagttggaaatgagc--tatcatacaccatagatgtgtttcaaattttttttttt--------------actattctgtgccttgtttttgcattttcttaggtatcttttgaagggcagaaattttaatttt-gGgtgcaggtgtactagctacagattcttgcagcttttattgatttcaaaattattacatc--tttttttttttt----tttttttc--gaggcagaatcttgctctg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4971302 734 - 111193037 -GGGCTCTCTAGGTGGAACTTATTATAGAGAGAGAATGTTGTATATTCTGTC-TCTCACACACACACTCACACATACTCTCTCCTGGTGTTAGTAATTTAGC-AAATGAGAATGTTGGGAAAGCGTatttgagcacagtcgtttgtgtggatatattttcgtttctcttgggtaaaaacttactagcatactttctggggtttatgataagtgtgcatttcgttctataagaaatagaacagtttccaaagtgggcacactatttcacatttccatcagcagcccat----gagagttccaattcttttatatccatggtatcatcaacttttttcgatttttgcatttctctgatgactgaggttaaacaggctacttgatacgtaggatctgacctattaatcctttg---atatataggctatttgtatatctttataaagtatctcttcagatgttttctccatccttcagactgtggatatttgtcttattgttactgtgttttaagagttctgtaaatatcctagttggaaatgagc--tatcatacaccatagatgtgtttcaaa-tttttttttt--------------actattctgtgccttgtttttgcattttcttaggtatcttttgaagggcagaaattttaatttt-gGgtgcaggtgtactagctacagattcttgcagcttttattgatttcaaaattattacatc--tttttttttttt----tttttttc--gaggcagaatcttgctctg i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3319211 734 - 10304083 -GTGCTCTCTAGGTGGAACTTATTATAGAGAGAGAATGTTGTATATTCTGTC-TCTCACACACACACTCACACATACTCTCTCCTGGTGTTAGTAATTTAGC-AAATGAGAATGTTGGGAAAGCatatttgagcacagtcgtttgtgtggatatattttcgtttctcttgggtaaaaacttactagcatactttctggggtttatgataagtatgcatttcgttctataagaaatagaacagtttccaaagtgggcacactatttcacatttccatcagcagcccat----gagagttccaattattttatatccatggtataatcaacttttttcgatttttgcatttctctgatgactgaggttatacaggctacttgatacgtaggatctgatctattaatcctttg---atatataggctatttgtatatctttataaagtatctcttcagatgttttctccatccttcagactgtggatatttgtcttattgttactgtgttttaagagttctgtaaatatcctagttggaaatgagc--tgtcatacaccatagatgtatttcaaa-tatttttttt--------------actattctgtgccttgtttttgcattttcttaggtatcttttgaagggcagaaattttaatttt-GGGTGCAGGTGTACTAGCTACAGATTCTTGCAGCTTTTATTGATTTCAAAATTATTACAtctttttttttttttt----tttttttt--gagacagaatc--gctctg i cerAty1.NW_012000820v1 C 0 I 70 s chlSab2.chr14 3403497 729 - 107702431 -GGGCTCTCTAGGTGGAACTTATTATGGAGAGATAATGTTGTATATTCTGT-------CACACACACTCACACATACTGTCTCCTGTTGTTAGTAATTTAGCAAAACGAGAATGTTGGGGAAGCatatttgagcaccgtcttttgtgtggacatattttcgtttctcttgggtagaaacttacaagcgaactttctggggtttatgataaatgtgcatttcattctataagaaatagaacagtttccaaactgggcacactatttcacatttccatcagcagcccat----gagagttccaattattttatatccacggtataatcaac-tttttcgatttttgcatttctctgatgactgaggttatacaggctacttgatacataggatctgacctattaatcctttg---atatataggctatttgtatatctttgtaaagtatctcttcagatgttttctccatccttcagactttggatatttgtcttattgttactgtgttttaagagttctgtaaatatcctagttggaaatgagctgtgtcatacaccatagatgtatttcaaa-tatttttttt--------------actattctgtgccttgtttttgcattttcttaggtatcttttgaagggcagaaattttaattttGGGGTGCAGGTGTACTAGCTACAGATTCTTGCAGCTTTTATTGATTTCAAAATTATTACAtt--cttttttttttt----tttttgt----agacagaatcttgctctg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 924375 731 + 1565135 -GTGCTCTCTAGGTGGAACTTATTATAGAGAGAGAATGTTGTATATTCTGTC-TCTCACACACACACTCACACATACTCTCTCCTGGTGTTAGTAATTTAGC-AAATGAGAATGTTGGGAAAGCatatttgagcacagtcgtttgtgtggatatattttcgtttctcttgggtaaaaacttactagcatactttctggggtttatgataagtatgcatttcattctataagaaatagaacagtttccaaagtgggcacactatttcacatttccatcagcagcgcat----gagagttccaattattttatatccatggtataatcaacttttttcaatttttgcatttctctgatgactgaggttatacaggctacttgatacgtaggatctgatctattaatcctttg---atatataggctatttgtatatctttataaagtatctcttcagatgttttctccatccttcagac--tggatatttgtcttattgttactgtgttttaagagttctgtaaatatcctagttggaaatgagc--tgtcatacaccatagatgtatttcaaa-tatttttttt--------------actattctgtgccttgtttttgcattttcttaggtatcttttgaagggcagaaattttaatttt-GGGTGCAGGTGTACTAGCTACAGATTCTTGCAGCTTTTATTGATTTCAAAATTATTACAtc--tttttttttttt----ttttttt---gagacagaatcttgctctg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3309889 732 - 13651311 GGGGCTCTCTAGGTGGAGCTTATTACGGAGAGAGAAAGTTGTATATTCTGTC-TCTCACACACACACTCACACATACTCTCTCCTGTTATTAGTAATTTAGCAAAATGAGAATGTTGGGGAAGCatatttgagcacagtcttttgtgtggacagattttcgtttctcttgggtaaaaacttactagcatactttctggggtttatgataagtgtgcatttcgttctataagaaatagaacagtttccaaagtgggcacactatttcacatttccatcagcagcatat----gagagtttcagttgttttatatccatggtatagtcaactttttttgatgtttgcatttctctgatgactgaggttatacaggctacttgatacataggatctgatatattaatcctttg---atatataggctatttgtgtatctttataaagtatctcttcagatgttttctccatccttcagactttggatatttgtcttattgttactgtgttttaagagttctgtacatatcctagttggaaatgagc--tgtcatatactacagaagtgtttcaaa-tatgtgtttt--------------actattctgtgccttgtttttgcattttcttaggtatcttttgaagggcagaaattttaattttGGGGTGCAGGTGTACTAGCTACAGATTCTTGCAGCTTTTATTAATTTCAAAATTATTACATC--tttttttttttt----ttt-------gagacagagtcttgctctg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3395174 720 - 108792865 -GGACTATCTAGGTGAAACTTATTATATAGAGATAATGTTGTATATTCTGTC---TTACACATACACTTCT----Tctctctcctgttcttagtaatttagc-aaataagaatgttaggaaagcatagtcgagtacagtcttttgtgtggacatatttttgtttctcttgtgtaaaaa----------tactttctgggttttatgataaatgtgtgtttagctctataagaaatacaacaatttccaaagtgagtacattatttcacatttccgtcagcagcgtatgagagagagttccagttatcttatatccacggcatagtcaac-tttttcgatttttgcatttctctgatgactgaggttatacaggctacttgatatatacgatctgatgtattaatccctta---atatataggctacttgtatatgtttataaagcatctcttcaaatgttttctccatctttcaaactttggatatttgtcttactgtta-tgtgttttaagagttctgtaagtatcctggttgggagtgagc--tattttacacaacagatgtgttgcaaa-tatttttt----------------actattctgtgctttgtttttgcatttt-gtaggtgtcttctgaagggcagaaattttcattttggggtgcaggtgtactagctacagattctcacatcatttattagtttcaaaattattacatc--ttttttttttttttaatttttg----gagacagagtcttgctctg i calJac3.chr14 C 0 C 0 s aotNan1.NW_018507213v1 1873589 715 - 1938448 -GACCTATCTAGGTGGAACTTATTATATAGAGATAATGTTGTATATTCTGTC---TCACACATACACTTCT----TCTCTCTCCTGTTATTAGTAATTTAGCAAaataagaatgttaggaaagtatattcaagtacagtcttttgtgtggacatatttttgtttctcttgcgtaaaaa----------tattttctgggttttatgataaacgtgcgtttagctctataagaaatacaacaattttcaaagtgggtacattatttcacatttccgtcagcagcatat--gagagagttccagttattttatatccgcggcgtagtcaat-tttttcaatttttgcatttccctgatgactgaggttatacaggctacttgatatataggatctgatgtattaatccttta---atatataggctacttgtatatgtttataaagtatctgttcaaatgttttctccatctttcaaactttggatatttgtcttattgttactgtgttttaagagttctgtaagtatcctggttggaagtgagc--tatcctacacaacaga-gtgttgcaaa-tatttttt----------------actattctgtgccttgtttttgaatttt-gtaggtgtcttttgaagagcagaaattttcattttgGGGTGCAGGTGTACTGGCTACAGATTCTCACATTGTTTATTAGTTTCAAAATTATTACATC--tttttttttttt----tttttg----gagacagagtctttctctg i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e cebCap1.NW_016107454v1 543885 1510 + 5243153 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=117931.000000 s hg38.chr2_KI270769v1_alt 3702 23 + 120616 tcgcccaggctggagta-cagttt s panTro5.chr2A 3441081 23 + 111504155 tcgcccaggctggagta-cagttt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327839 23 + 114371477 tcgcccaggctggagta-cagttt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 201224 23 + 637652 tcgcccaggctggagta-cagttt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3000910 23 + 81552678 gcgcccaggctggagta-cagttt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258802 23 + 108979918 tctcccaggctggagta-cagttt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4972036 23 - 111193037 tctcccaggctggagta-cagttt i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3404226 23 - 107702431 tcgcccaggctggagta-cagttt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 925106 23 + 1565135 tctcccaggctggagta-cagttt i manLeu1.NW_012104432v1 C 0 I 370 s colAng1.NW_012118821v1 3310621 23 - 13651311 tcgcccaggctggagta-cagttt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3395894 24 - 108792865 tcacctaggctggagtgccagtgg i calJac3.chr14 C 0 C 0 s aotNan1.NW_018507213v1 1874304 23 - 1938448 tcacctaggctggagtg-cagtgg i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e cebCap1.NW_016107454v1 543885 1510 + 5243153 I e cerAty1.NW_012000820v1 3319945 70 - 10304083 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=113467.000000 s hg38.chr2_KI270769v1_alt 3725 26 + 120616 cacaatcacagctcactgcaacctcc s panTro5.chr2A 3441104 26 + 111504155 cacaatcacagctcactgcaacctct i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327862 26 + 114371477 cacaatcacagctcactgcaacctct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 201247 26 + 637652 cacaatcacagctcactgcaacctcc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3000933 26 + 81552678 cacgatcacagctcactgcaacctcc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258825 26 + 108979918 tgcaatcacagctcactgtaacctcc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4972059 26 - 111193037 tgcaatcacagctcactgtaacctcc i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3404249 26 - 107702431 tgcaatcacagctcactgcaacctcc i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3310644 26 - 13651311 tgcaatcacagctcactgcaacctcc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3395918 26 - 108792865 cgcaatctcagctcactgcaacctct i calJac3.chr14 C 0 C 0 s aotNan1.NW_018507213v1 1874327 26 - 1938448 cgcaatcttggttcactgaaacctcc i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e cebCap1.NW_016107454v1 543885 1510 + 5243153 I e manLeu1.NW_012104432v1 925129 370 + 1565135 I e cerAty1.NW_012000820v1 3319945 70 - 10304083 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=129523.000000 s hg38.chr2_KI270769v1_alt 3751 26 + 120616 gcctc----------ccaggtttaagtgattctcat s panTro5.chr2A 3441130 26 + 111504155 gcctc----------ccaggtttaagtgattctcat i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327888 26 + 114371477 gcctc----------ccaggtttaagtgattctcat i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 201273 26 + 637652 gcctc----------ccaggtttaagtgattctcat i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3000959 26 + 81552678 gcctc----------ccaagtttaagtgattctcat i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258851 26 + 108979918 tcctc----------ccaggtttaagtgattctcat i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4972085 26 - 111193037 tcctc----------ccaggtttaagtgattctcat i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3320015 36 - 10304083 ccctcccgaagcgctccaggtttaagtgattttcat i cerAty1.NW_012000820v1 I 70 C 0 s chlSab2.chr14 3404275 26 - 107702431 tcctc----------ccaggtttaagtgattctcat i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3310670 26 - 13651311 tcctc----------ccaggtttaagtgattctcat i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3395944 26 - 108792865 gcctc----------ccagatttaagcaattcttat i calJac3.chr14 C 0 C 0 s aotNan1.NW_018507213v1 1874353 26 - 1938448 acccc----------ccgggttcaagcaattctcct i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e cebCap1.NW_016107454v1 543885 1510 + 5243153 I e manLeu1.NW_012104432v1 925129 370 + 1565135 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=278594.000000 s hg38.chr2_KI270769v1_alt 3777 48 + 120616 gcctcaccctccagagtagctgggactacaggcacg--caccaccacgcc s panTro5.chr2A 3441156 48 + 111504155 gcctcaccctccagagtagctgggactacaggcacg--caccaccatgcc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327914 48 + 114371477 gcctcaccctccagagtagctgggactacaggcacg--caccaccacgcc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 201299 48 + 637652 gcctcaccctccagagtagctgagactacaggcacg--caccaccacgcc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3000985 48 + 81552678 gcctcaccctccaaagtagctgggactacaggcacg--caccaccacacc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258877 48 + 108979918 gcctcagcctccaaagtagctgggactacaggcatg--caccaccacacc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4972111 48 - 111193037 gcctcagcctccaaagtagctgggactacaggcatg--caccaccacacc i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3320051 49 - 10304083 gcctcagcctcccaagtagctgggaataca-gcatggccaccacCACCAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3404301 48 - 107702431 gcctcagcctccaaagtagctgggactacaggcatg--caccaccacacc i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3310696 48 - 13651311 gcctcagcctccaaagtagctgggactacaggcatg--caccaccacgcc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3395970 48 - 108792865 gcctcagcctccaaagtaactgagactacaggcatg--caccaccatgcc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3059606 48 - 7082604 gcctcagccttccaaagtgctgggattacaggtatg--aaccactgagct i saiBol1.JH378218 N 0 C 0 s aotNan1.NW_018507213v1 1874379 48 - 1938448 gcctcagcctcctgagtagctgggactacagacgcg--tgccaccacgcc i aotNan1.NW_018507213v1 C 0 I 140 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e cebCap1.NW_016107454v1 543885 1510 + 5243153 I e manLeu1.NW_012104432v1 925129 370 + 1565135 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=18492.000000 s hg38.chr2_KI270769v1_alt 3825 8 + 120616 cagctaat s panTro5.chr2A 3441204 8 + 111504155 cagctaat i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327962 8 + 114371477 cagcttaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 201347 8 + 637652 cagctaat i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3001033 8 + 81552678 cagctaat i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258925 8 + 108979918 cagctaat i rheMac8.chr13 C 0 I 4 s macFas5.chr13 4972159 8 - 111193037 cagctaat i macFas5.chr13 C 0 I 4 s cerAty1.NW_012000820v1 3320100 4 - 10304083 CAGC---- i cerAty1.NW_012000820v1 C 0 I 4 s chlSab2.chr14 3404349 4 - 107702431 cagc---- i chlSab2.chr14 C 0 I 4 s colAng1.NW_012118821v1 3310744 8 - 13651311 cagctaat i colAng1.NW_012118821v1 C 0 I 191 s calJac3.chr14 3396018 8 - 108792865 cagcttat i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3059654 8 - 7082604 tggccCCC i saiBol1.JH378218 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e cebCap1.NW_016107454v1 543885 1510 + 5243153 I e aotNan1.NW_018507213v1 1874427 140 - 1938448 I e manLeu1.NW_012104432v1 925129 370 + 1565135 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=3785.000000 s hg38.chr2_KI270769v1_alt 3833 1 + 120616 t s panTro5.chr2A 3441212 1 + 111504155 t i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327970 1 + 114371477 t i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 201355 1 + 637652 t i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3001041 1 + 81552678 t i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258937 1 + 108979918 t i rheMac8.chr13 I 4 C 0 s macFas5.chr13 4972171 1 - 111193037 t i macFas5.chr13 I 4 C 0 s cerAty1.NW_012000820v1 3320108 1 - 10304083 t i cerAty1.NW_012000820v1 I 4 C 0 s chlSab2.chr14 3404357 1 - 107702431 t i chlSab2.chr14 I 4 C 0 s calJac3.chr14 3396026 1 - 108792865 t i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3059662 1 - 7082604 C i saiBol1.JH378218 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e cebCap1.NW_016107454v1 543885 1510 + 5243153 I e aotNan1.NW_018507213v1 1874427 140 - 1938448 I e colAng1.NW_012118821v1 3310752 191 - 13651311 I e manLeu1.NW_012104432v1 925129 370 + 1565135 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=4664.000000 s hg38.chr2_KI270769v1_alt 3834 1 + 120616 t s panTro5.chr2A 3441213 1 + 111504155 t i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327971 1 + 114371477 t i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 201356 1 + 637652 t i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3001042 1 + 81552678 t i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258938 1 + 108979918 t i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4972172 1 - 111193037 t i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3320109 1 - 10304083 t i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3404358 1 - 107702431 t i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3396027 1 - 108792865 t i calJac3.chr14 C 0 I 298 s saiBol1.JH378218 3059663 1 - 7082604 C i saiBol1.JH378218 C 0 I 2 s aotNan1.NW_018507213v1 1874567 1 - 1938448 t i aotNan1.NW_018507213v1 I 140 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e cebCap1.NW_016107454v1 543885 1510 + 5243153 I e colAng1.NW_012118821v1 3310752 191 - 13651311 I e manLeu1.NW_012104432v1 925129 370 + 1565135 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=42933.000000 s hg38.chr2_KI270769v1_alt 3835 8 + 120616 tttttttt s panTro5.chr2A 3441214 8 + 111504155 tttttttt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327972 8 + 114371477 tttttttt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 201357 8 + 637652 tttttttt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3001043 8 + 81552678 tttctttt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258939 8 + 108979918 tttttttt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4972173 8 - 111193037 tttttttt i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3320110 8 - 10304083 tttttttt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3404359 8 - 107702431 tttttttt i chlSab2.chr14 C 0 I 127 s calJac3.chr14 3396326 8 - 108792865 Cttttttt i calJac3.chr14 I 298 C 0 s saiBol1.JH378218 3059666 8 - 7082604 CCtttttt i saiBol1.JH378218 I 2 C 0 s aotNan1.NW_018507213v1 1874568 8 - 1938448 tttttttt i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e cebCap1.NW_016107454v1 543885 1510 + 5243153 I e colAng1.NW_012118821v1 3310752 191 - 13651311 I e manLeu1.NW_012104432v1 925129 370 + 1565135 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=13693.000000 s hg38.chr2_KI270769v1_alt 3843 8 + 120616 ttttcttg s panTro5.chr2A 3441222 6 + 111504155 tt--cttg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327980 3 + 114371477 ct-----g i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 201365 7 + 637652 tt-ccttg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3001051 8 + 81552678 tttcgttg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258947 8 + 108979918 tttttttg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4972181 8 - 111193037 tttttttg i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3320118 8 - 10304083 tttttttg i cerAty1.NW_012000820v1 C 0 C 0 s calJac3.chr14 3396334 8 - 108792865 tttttttg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3059674 8 - 7082604 tttttttg i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1874576 8 - 1938448 tttttttg i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e cebCap1.NW_016107454v1 543885 1510 + 5243153 I e colAng1.NW_012118821v1 3310752 191 - 13651311 I e manLeu1.NW_012104432v1 925129 370 + 1565135 I e chlSab2.chr14 3404367 127 - 107702431 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=8968.000000 s hg38.chr2_KI270769v1_alt 3851 6 + 120616 agacac-- s panTro5.chr2A 3441228 6 + 111504155 agacac-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327983 6 + 114371477 agacac-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 201372 6 + 637652 agacac-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3001059 6 + 81552678 agacac-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258955 6 + 108979918 agacgt-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4972189 6 - 111193037 agacgt-- i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3320126 6 - 10304083 agacat-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3404494 6 - 107702431 agagat-- i chlSab2.chr14 I 127 C 0 s calJac3.chr14 3396342 6 - 108792865 --acatgg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3059682 6 - 7082604 --acatgg i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1874584 6 - 1938448 --acatgg i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e cebCap1.NW_016107454v1 543885 1510 + 5243153 I e colAng1.NW_012118821v1 3310752 191 - 13651311 I e manLeu1.NW_012104432v1 925129 370 + 1565135 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=753455.000000 s hg38.chr2_KI270769v1_alt 3857 125 + 120616 agtctcactctgtcactcaggctggagtgcagtggca--caatctcagc-tcactccaacctccacctcccaggctcaagcaattcccctgcctcag--cctcctgagtagctgggattataggcat-gtg s panTro5.chr2A 3441234 125 + 111504155 agtctcactctgtcactcaggctggagtgcagtggca--caatctcagc-tcactccaacctccacctcccaggctcaagcaattcccctgcctcag--cctcctgagtagctgggattataggcat-gtg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3327989 125 + 114371477 agtctcactctgtcactcaggctggagtgcagtggca--caatctcagc-tcactccaacctccacctcccaggctcaagcaattcccctgcctcag--cctcctgagtagctgggattataggcat-gtg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 201378 125 + 637652 agtctcactctgtcactcaggctggagtgcagtggca--caatctcagc-tcactccaacctccacctcccaggctcaagcagttcccctgcctcag--cctcctgagtagctgggattataggcat-gtg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3001065 125 + 81552678 agtctcactctgtcactcaggctggagtgcagtggca--caatctcagc-tcactccagcctccacctcccaggctcaagcaattcccctgcctcag--cctcctgactagctgggattataggcat-gtg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3258961 125 + 108979918 agtctcactctgtcatttaggctggagtgcagtgaca--caatcttggc-tcactccaacctccgcctcccaggctcaagcaattcccctgcctcag--cctcctgagtagctgggattatagacat-gcg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4972195 125 - 111193037 agtctcactctgtcatttaggctggagtgcagtgaca--caatcttggc-tcactccaacctccgcctcccaggctcaagcaattcccctgcctcag--cctcctgagtagctgggattatagacat-gcg i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3320132 130 - 10304083 atctcagctcggtccattcagcaggagtgca-tgacagccaatctcggcttcccttcacctcccgcctcccaggcgcagccaattaccctgcctccagccctcctgagtagctggaattatagacatggca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3404500 125 - 107702431 agtctcactctgtcattcaggctggagtgcagtgaca--aaatctcggc-tcactccaacctccgcctcccaggctcaagcaattcccctgcctcag--cctcctgagtagctgggattatagacat-gcg i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3396348 125 - 108792865 agccttgctctgttactcaggctggagtacagtgaca--caatctcagc-tcactgcaacctctgcctcccaagctcaagcaatccccctgcctcag--cctcctaagtagctgggattataggtgt-gca i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3059688 125 - 7082604 agtcttgctctgttactcaggctggagtacagtgaca--caatctcagc-tcactgcaacctctgcctcccaagctcaagcaattcccctgcctcag--cctcctaagtagctgggattataggtgt-gca i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 545395 125 + 5243153 agtctcgctctgttactcagactggagtacagtgaca--cagtctcgac-tcactgcaacctctgcctcccaagctcaagcaattctcctgcctcag--cctcctaagtagctgggattataggtgt-gca i cebCap1.NW_016107454v1 I 1510 C 0 s aotNan1.NW_018507213v1 1874590 125 - 1938448 agtctcgctctgttactcaggctggagtacagcgaca--caatcttggc-tcactgcaacctccacctcccaagctcaagcaattcccctgcctcag--cctcctaagtagctgggattataggtgt-gca i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e colAng1.NW_012118821v1 3310752 191 - 13651311 I e manLeu1.NW_012104432v1 925129 370 + 1565135 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=273594.000000 s hg38.chr2_KI270769v1_alt 3982 48 + 120616 ccacg--acacccagctaatttttgtaattttagtagacacgtggttttg s panTro5.chr2A 3441359 48 + 111504155 ccacg--acacccagctaatttttgtaattttagtagacacgtggtttca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3328114 48 + 114371477 ccacg--acacccagctaatttttgtaattttagtagacacgtggtttca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 201503 48 + 637652 ccacg--acacccagctaatttttgtaattttagtagacacatggtttcg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3001190 48 + 81552678 ccaca--acacccagctaatttttgtaattttagtagacatgtggtttcg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3259086 47 + 108979918 ccacc--acacccagctaatttttgtaattttagtagacagg-ggtttcg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4972320 47 - 111193037 ccacc--acacccagctaatttttgtaattttagtagacagg-ggtttcg i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3320262 49 - 10304083 ccacccaccacccagctaaatttttgtattttagtagaccag-ggtttcg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3404625 47 - 107702431 ccacc--acacccaactaatttttgtaattttagtagacagg-ggtttcg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 925499 47 + 1565135 ccacc--acacccagctaatttttgtaattttagtagacagg-ggtttcg i manLeu1.NW_012104432v1 I 370 C 0 s calJac3.chr14 3396473 48 - 108792865 ctacc--acacccagctaatttttatattaataatagataccaggttttg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3059813 48 - 7082604 ctacc--acacccggctaatttttatattaacagtagacacaaggttttg i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 545520 48 + 5243153 ctacc--acatccagctaatttttatattgatagtagacacaaggttttg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1874715 48 - 1938448 ctacc--acacccagctaatttttgtattaatattagacacaaggttttt i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e colAng1.NW_012118821v1 3310752 191 - 13651311 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=4217364.000000 s hg38.chr2_KI270769v1_alt 4030 522 + 120616 cc-atgttggtcag-gctggtctcaat---ctcctgacatcaagtgatctgctcacctcagcttcccaaagtgc-tggaatgacaggagt-gagccaccacgcctggcta-gttcttgtatttttagtagaga--cagggcttcac---cacattggccaggctggtcttgaactcatgacctcaagtgatctgcccaccttggcctcccaaagtgctgggattacaggcatgagccaccatgcccagcctcatcttcgttattaaagtttatttttgccaaatatacaacatatttacagtatgtagaattctaggttgacagg-t-ttttttttttttctttttagaccttgtaagatgccatcccactgtc--ttttgacttgcatagtttctgatgagaagtctgtagtaattcttatcctcgctcctctgtacctaat-tgtatatttttcctctgggtgcttttatga-tttatccctggtttttcagcagtttggttctgatgtactttcacatgggatttatgtttattttgc s panTro5.chr2A 3441407 519 + 111504155 cc-atgttggtcag-gctggtctcaat---ctcctgacatcaagtgatctgctcacctcagcttcccaaagtgc-tggaatgacaggagt-gagccaccacgcctggcta-gttcttgtatttttagtaaaga--caggacttcac---cacattggccaggctggtcttgaactcatgacctcaagtgatctgcccaccttggcctcccaaagtgctgggattacaggcatgagccaccatgcccagcctcatcttcgttattaaagtttatttttgccaaatatacaacatatttacagtatgtagaattctaggttgacagg-t-ttttttttt---ctttttagaccttgtaagatgccatcccactgtc--ttttgacttgcatagtttctgatgagaagtctgtagtaattcttatccttgctcctctgtacctaat-tgtatgtttttcctctgggtgcttttacga-tttatccctggtttttcagcagtttggttctgatgtaccttcacatgggatttatgtttatcttgc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3328162 519 + 114371477 cc-atgttggtcag-gctggtctcaat---ctcctgacatcaagtgatctgctcacctcagcttcccaaagtgc-tggaatgacaggagt-gagccaccacgcctggcta-gttcttgtatttttagtaaaga--caggacttcac---cacattggccaggctggtcttgaactcatgacctcaagtgatctgcccaccttggcctcccaaagtgctgggattacaggcatgagccaccatgcccagcctcatcttcgttattaaagtttatttttgccaaatatacaacatatttacagtatgtagaattctaggttgacagg-t-ttttttttt---ctttttagaccttgtaagatgccatcccactgtc--ttttgacttgcatagtttctgatgagaagtctgtagtaattcttatccttgctcctctgtacctaat-tgtatgtttttcctctgggtgcttttacga-tttatccctggtttttcagcagtttggttctgatgtaccttcacatgggatttatgtttatcttgc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 201551 520 + 637652 cc-atgttggtcag-gctggtctcaat---ctcctgacatcaagtgatctgctcacctcagcttcccaaagtgc-tggaatgataggagt-gagccaccacgcctggcta-gttcttgtatttttagtagaga--cagggcttcac---cacattggccaggctggtcttgagctcataacctcaagtgatctgcccaccttggcctcccaaagtgctgggattacaggcatgagccaccatgcccagcctcatcttcattattaaagtttatttttgccaaatatacaacatatttacagtatgtagaattctaggttgacagg-t-ttttttttt--tctttttagaccttgtaagatgccatcccactgtc--ttttgacttgcatagtttctgatgagaagtctgtagtaattcttatccttgctcctctgtacctaat-tgtatatttttcctctgggtgcttttacaa-tttatccgtggtttttcagcagtttggttctgatgtaccttcacatgggatttatgtttatcttgc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3001238 518 + 81552678 cc-atgttggtcag-gctggtcttaaa---ctcctgacatcaagtgatccgctcacctcagcttcccaaagtgc-tggaatgacaggagt-gagccactgcacctggcca-gttcttgtatttttagtagaga--cagggcttcac---cacattgcccaggctggtcttgaactcgtgaccttaagtgatctgcccactttagcctcccaaagtgccaggattacaggcatgagccaccatgcccagcctcatcttcgttattaaaggttatttttgccaaatatacaacatgtttaca-tatgtagaattctaggttgacagg-t-ttttttttt---ctttttagaccttgtaagatgccatcccactgtc--ttttgacttgcatagtttctgatgagaagtctgtagtaattcttgtccttgctcctctgtacctaat-tgaatattttttctctgggtgcttttacga-tttatccctggtttttcagcagtttggttgtgatgtaccttcacatgggatttatgtttatcttgc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3259133 520 + 108979918 cc-atgttggtcag-gctggtctcaaa---ctcctgatgtcaagtgatccgctcacctcagcttcccaaagtgc-tggaatgacaggagttgagccactgcgcctggcca-gttcttgtatttttagtagaga--cagggcctcac---catgttggccaggctggtcttgaactcatggcctcaagtgatctgcctgccttggcctcccaaagtgctaggattacaggcatgagccaccatgctcagcctcatcttcattattaaagcttattttcgctgaatatacaacatgtttacagtatgtagaattctaggttagcagg---ttttttttt---ctttttagagcttgtaagatgccatcccactgtc--ttttgacttgcatagtttctgatgagaagtctgtagtgattcttatccttgctcttctatgcctaat-tgcatatttttcctctaggtgcttttacgattttatccctggtttttcagcagtttggttctgacgtaccttcacgtgggatttatgtttctcttgc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4972367 520 - 111193037 cc-atgttggtcag-gctggtctcaaa---ctcctgatgtcaagtgatccgctcacctcagcttcccaaagtgc-tggaatgataggagttgagccactgcgcctggcca-gttcttgtatttttagtagaga--cagggcctcac---catgttggccaggctggtcttgaactcatggcctcaagtgatctgcctgccttggcctcccaaagtgctaggattacaggcatgagccaccatgctcagcctcatcttcattattaaagcttattttcgctgaatatacaacatgtttacagtatgtagaattctaggttagcagg---ttttttttt---ctttttagagcttgtaagatgccatcccactgtc--ttttgacttgcatagtttctgatgagaagtctgtagtgattcttatccttgctcttctatgcctaat-tgcatatttttcctctaggtgcttttacgattttatccctggtttttcagcagtttggttctgacgtaccttcacgtgggatttatgtttctcttgc i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3320311 532 - 10304083 ccaatgttggtcagtgctggtctccaaagctccctgatgtc-agtgatccgctcacctcagcttcccaaagtgcttggaatgacaggagtagccccactgcgcctggcAGTTttcttgtatttttagtagagacccagggcctcaaacgcatgttggccaggctggtcttgaactcatggcctcaagtgatctgcctgccttggcctcccaaagtgctaggattacaggcatgagccaccatgctcagcctcatcttcattattaaagcttatttttgctgaatatacaacatgtttacagtgtgtagaattctaggttagcaggtt-ttttttttt---ctttttagaccttgtaagatgccatcccac-atg--ttttgacttgcatagtttctgatgagaattctgtagtgattcttatccttgctcttctgtgcctaat-tgcatatttttcctctaggtgcttttacgattttatccctggtttttcagcagtttggttctgatgtaccttcacatgggatttatgtttatcttgc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3404672 520 - 107702431 cc-atgttggtcag-gctggtctcaaa---ctcctgatgtcaagtgatccgctcacctcagcttcccaaagtgc-tggaatgacaggagt-gagccactgcgcctggccA-Gttcttgtatttttagtagaga--cagggcctcac---catgttggcctggctggtcttgaactcatggcctcaagtgatctgcctgccttggcctcccacagtgctaggattacaggcatgagccaccatgctcagcctcatcttcattattaaagcttatttttgctgaatatacaacatgtttacagtatgtagaattctaggttagcagg-t-ttttttttt---ctttttagaccttgtaagatgccatcccactgtc--ttttgacctgcatagtttctgatgagaagtctgtagtaattcttatccttgctcttctgtgcctaat-tgcatatttttcctctaggtgcttttacgattttatccctggtttttcagcagtttggttctgacgtaccttcacatgggatttatgtttatcttgc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 925546 515 + 1565135 cc-atgttggtcag-gctggtctcaaa---ctcctgaTGtcaagtgatccgctcacctcagcttcccaaagtgc-tggaatgacaggagt-gagccactgcgcctggcca-gttcttgtatttttagtagaga--cagggcctcac---catgttggccaggctggtcttgaacgcatggcctcaagtgatctgcctgccttggcctcccaaagtgctaggattacaggcatgagccaccatgctcagcctcatcttcattattaaagcttattttcgctgaatat---acatgtttacagtatgtagaattctgggttagcagg-t-ttttttttt---ctttttagagcttgtaagatgccatcccactgtc--ttttgacttgcatagtttctgatgagaagtc--tagtaattcttatccttgctcttctgtgcctaat-tgcatatttttcctctaggtgcttttacgattttatccctggtttttcagcagtttggttctgacgtaccttcacgtgggatttatgtttctcttgc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3310943 519 - 13651311 cc-atgttggccag-gctggtcttgaa---ctcatggcctcaagtgatctgcctgccttggcctcccaaagtgc-tggaatgacaggagt-gagccactgcgcctggcca-gttcttgtatttgtagtagaga--cagggcctcac---catgttggccaggctggtcttgaactcatggcctcaagtgatctgcctgccttggcctcccaaagtgctgggattacaggcatgagccaccatgctcagcctcatcttcattattaaagcttatttttgctgaatctacaacatgtttacagtatgtagaattctagattagcagg---gtttttttt---ctttttagaccttgtaagatgccatcccactgtc--ttttgacttgcatagtttctgatgagaagtctgtagtaattcttatccttgctcttctgtgcctaat-tgcgtatttttcctctaggtgcttttacgattttatccctggtttatcggcagtttggttctgacgtaccttcacatgggatttatgtttatcttgc i colAng1.NW_012118821v1 I 191 C 0 s calJac3.chr14 3396521 519 - 108792865 cc-atgttggtcag-gctggtcttgaa---ctccttacctctagtgagccacttgcctcaaattcccacagtgc-tgggattacagaagt-gagccaccatgcctggcca-gtttttgtatttttggtagaga--cgggg-ttcac---catgttggccaagatggtcttgaactcatggcctcaagtgatctgcccaccttggcctcccaaagtgctgggattacaggtatgagccaccattcctggccttgttttcatttttaaagtttatttttgccaaacacacaacatgtttatagtatctagaattctaggttgacagg-c-tttttattt---ccatttagaccttgtaagatgccatcccactgtc--ttttgacttgcatagtttctgatgggtagtctgtagtaattcttatccttgctcttctgtacctaatggggatatttgttctctgggtggttttaagg-tttatccctggtttttcagccgtttggttcccatgtaccttcacacgggatttatgtttatcttgc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3059861 523 - 7082604 cc-atgttggtcat-gctggtcttgaa---ctccttacctctagtgagccgctcgcctctaattcccacagtgc-tgtaattacaggagt-aagccaccgtgcctggcca-gtttttgtatttttggtagaga--cggggattcac---catgttggccaagatggtcttgaactcatggcctcaagtgatctgcccaccttggccttccaaagtgctgggattacaggcatgagccatcattcctcgccTTGTcttcatttttaaagtttatttttgccaaatacacaacatgtttatagtatctagaattctaggttgatagg-cttttttattt---ctttttagaccttgtaagatgccatcccactgtcaattttgacttgcatagtttctgacaggaagtctgtagtaattcttatccttgctcttctgtacctaatgggtacatttgttctctgggtggttttaagg-tttatccctggcttttcagcagcttggttcctgtgtaccttcacacgggatttatgtttatctcgc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 545568 517 + 5243153 cc-atgttggtcag-gctggtcttgaa---cgccttacctctagtgagctgcttgcctcaaattcccacagtgc-tggaattataggagt-gagccaccgtgcctggcca-gtttttgtgtttttggtagaga--cggggattcac---catgtaggccaagatggcctcaaactcatggcctcaagtgatctgcccaccttggccttccaaagtgctgggattacaggcatgagccaccattcctggccTTGTcttcatttttaaagtttatttttgccaaatat---acatgtttatagtatctagaattctaggttgacagg-c-tttttattt---ctttttagaccttgtaagatgccatcccactgtc--ttttgacttgtatattttctgatgggaagtctgtagtaattcttatccttgctcttctgtatctagtgggtatatttgttctctgggtggttttaagg-cttatccctgttttttcagcagtctggttcccaagtactttcacacgggatttatgtttatcttgc i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1874763 519 - 1938448 cc-atgttggtcag-gctggtcttgaa---ctccttacctctagtgagccgcttgcct-gaattcccacagtgc-tggaattacaggagt-gagccaccatgcctggccA-Gtttttgtatttttggtagaga--caggggttcac---catgtcagtcaagatggtctcgaactcatggcctcaagtgatctgcccaccttggcctcccaaagtgctgggattgcaggcatgagccgtcattcctggccTTGTGTTCATTTTCAAAGTTTATTTTTGCCAAATGCACAACATGTTTATAGTatctagaattctaggttgacagg-c-cttttattt---ccttttagaccttggaagatgccatcccactgtc--ttttgacttgcatagtttctgatgggaagtctgtagtaattcttatccttgctcttctgtacctaatgggtatatttgttctctaggtggttttaagg-tttatccctggtttttcagcagtttggttcccatgtaccttcacacgggatttatgtttagcttgc i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e macNem1.NW_012011978v1 3365058 2979 + 3644372 I a score=7931237.000000 s hg38.chr2_KI270769v1_alt 4552 893 + 120616 tcggcattcattggctgttttggatctgagactttatcatttttgtcaatttggggaaatttggggtcattatttcttcaggtattttctg-tg--tttt-ttctctctcctacttctggaaact-ccaggtatacctactgcttcatattgccacagaagctactgaggatctgtttttg----tgtttttattttgcagtcttt--ctctctgtggttaagtttagaatttctactgctgtccttaagttcacttatcttttcttcagactttttagtttgcagctaatcctattcagtgacttttccatgttttttacctctggaatttttatttggttctttttcgtatcatttttctt---ttatcattttcaagctttactttaaactcttgagaacatttat-aagaggcaccttaaagttgtcttctgagctgggtgtggtggcatgtgcccatagtcacagctactcaggaggctgaggcaggagaatcactggagcccaggagtgtgaggccagtctgggcaacataggcctcttt-aaag--aaaaaaaaa--ggaaagaaagaaaag-aaaagaa-aagttcttatctgaaagttccattatctatgtaatatctgcatctatttttatgtactttttctcttagttacgggacacatgttttacatgtc--------------------------------tagtaattttttattagaaggtggacattgtggatttcaggt---tgtgtgtctagctttttcatcttcctttgaaaagacttgccctttattctgacaagcaagtaacttatttacagatttagtttcatgtttgtttttagactttttagaatgactttagagcagtAGCTTCTACTTTTGGGTGACCTTTCTGAAGTCTGTACTGAATTCCCCTTCTGTTCAGTGAGAGCACT s panTro5.chr2A 3441926 896 + 111504155 tcggcattcattggctgttttggatctgagactttatcatttttgtcaatttggggaaatttggggtcattatttcttcaggtattttctg-tg--tttt-ttctctctcctacttctggaaact-ccaagtatacatactgcttcatattgccacagaagctactgaggatctgtttttg----tgtttttattttgccgtctttttctctctgtggttaagtttagaatttctactgctgtccttaagttcacttatcttttcttcagactttttagtttgcagctaatcctattcagtgacttttccatgttttttatctctggaatttttatttggttctttttcatatcatttttctt---ttatcattttcaagctttactttaaactcttgagaacatttat-aagaggcaccttaaagttgtcttctgagccaggtatggtggcatgtgcccatagtcacagctactcaggaggctgaggcaggagaatcactggagcccaggagtgtgaggccagtctgggcaacacaggcctcttt-aaag--aaaaaaaaa-aggaaagaaagaaaag-aaaaaaa-aagtccttatctgaaagttccattatctatgtaatatctgcatctatttttatgtactttttctcttagttacgggacacatgttttacatgtc--------------------------------tagtaattttttattagaaggtggacattgtggatttcaggt---tgtgtgtctagctttttcatcttcctttgaaaagacttgccctttattctgacaagcaagtaacttatttacagatttagtttcatgtttgtttttaggctttttagaatgactttagagcagtAGCTTCTACTTTTGGGTGACCTTTCTGAAGTCTATACTGAATTCCCCTTCTGTTCAGTGAGAGCACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3328681 895 + 114371477 tcggcattcattggctgttttggatctgagactttatcatttttgtcaatttggggaaatttggggtcattatttcttcaggtattttctg-tg--tttt-ttctctctcctacttctggaaact-ccaagtatacatactgcttcatattgccacagaagctactgaggatctgtttttg----tgtttttattttgccgtctttttctctctgtggttaagtttagaatttctactgctgtccttaagttcacttatcttttcttcagactttttagtttgcagctaatcctattcagtgacttttccatgttttttatctctggaatttttatttggttctttttcgtatcatttttctt---ttatcattttcaagctttactttaaactcttgagaacatttat-aagaggcaccttaaagttgtcttctgagccaggtatggtggcatgtgcccatagtcacagctactcaggaggctgaggcaggagaatcactggagcccaggagtgtgaggccagtctgggcaacacaggcctcttt-aaag--aaaaaaaaa--ggaaagaaagaaaag-aaaaaaa-aagtccttatctgaaagttccattatctatgtaatatctgcatctatttttatgtactttttctcttagttacgggacacatgttttacatgtc--------------------------------tagtaattttttattagaaggtggacattgtggatttcaggt---tgtgtgtctagctttttcatcttcctttgaaaagacttgccctttattctgacaagcaagtaacttatttacagatttagtttcatgtttgtttttaggctttttagaatgactttagagcagtAGCTTCTACTTTTGGGTGACCTTTCTGAAGTCTATACTGAATTCCCCTTCTGTTCAGTGAGAGCACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 202071 896 + 637652 tcggcattcattggctgttttggatctgagactttatcatttttgtcaatttggggatatttggggtcattatttcttcaggtattttctg-tg--tttt-ttctctctcctacttctggaaact-ccaagtatacatactgcctcatattgccacagaagctactgaggatctgtttttg----tgtttttattttgcagtctttttctctctgtggttaagtttagaatttctactgctgtccttaagttcacttatcttttcttcagactttttagtttgcagctaatcctattcagtgacttttccatgttttttatctctggaatttttatttggttcttttttgtatcatttttctt---ttatcattttcaagctttactttaaactcttgagaacatttat-aagaggcaccttaaagttgtcttctgagccaggtgtggtggcatgtgcccatagtcacagctactcaggaggctgaggcaggagaatcactggagcccaggagtgtgaggccagtctgggcaacataggcctcttt-aaag--aaaaaaaaa--ggaaagaaggaaaagaaaaaaaa-aagttcttatctgaaagttccattatctatgtaatatctgcatctatttttatgtactttttctcttagttacgggacacatgttttacatgtc--------------------------------tagtaattttttattagaaggtggacattgtggatttcaggt---tgtgtgtctagctttttcatcttcctttgaaaagacttgccctttattctgacaagcaagtaacttatttacagatttagtttcatgtttgtttttaggctttttagaatgacttcagagcagtAGCTTCTACTTTTGGGTGACCTTTCTGAAGTCTATACTGAATTCCCCTTCTGTTCAGTGAGAGCACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3001756 876 + 81552678 tcggcattca---------ttggatctgagactttatcatttttgtcaatttggggaaatttggggtcattatttcttcaggtattttttg-tg--tttt-ttctctctcctacttccggaaact-ccaagtatatatactgcttaatattgccacagaagttactgaggatctgtttttgttactgtttttatttttcagtctttttctctttgtggttaagtttagaatttctgttgctgtccgtaagttcacttatcttttcttcagactttttagtttgcagctaatcctattcattgacttttccgtgttttttatctctggaatttttatttggttcttttttgtatcatttttctt---ttatcattttcaagctttactttaaactcttgagaacatttataaagaggcaccttaaagttgtcttcggagctgggtgtggtggcatgtgcccgtagtcacagttactcaggaggctgaggcaggagaatcactggagcccaggagtttgaggccagtctgggcaacataggcctcttt-aa---------------aaaaagaaagaaaag---agaaa-aagttcttatccgaaagttccattatctatgtaatatctgcatctatttttatgtactttttctcttagttacaggacac--gttttacatgtc--------------------------------tagtgattttttattagaaggtggacattgtggatttcaggt---tttgtgtctacctttttcatcttcctttgaaaagacttgccctttattctgacaagcaagtaacttatttacagatttagtttcatgtttgtttttaggctttttagAATGACTTTTGAGTAGTAGCTACTACTTTTGGGTGACCTTTCTAAAGTCTATACTGAATGCCCCTTCTGTTCAGTGAGAGCACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3259653 888 + 108979918 tcggcattcgttgaccgtcttggatctgagagtttatcatttttgtcaatttggggaaatttttggtcattatttcttcaggtattttttg-tg--tttt-ttctctttcctacttctggaacctcccaagtatacatactgcttaatattgccacagaagttactgaggatctgtttttgttattgtttttattttccagtctttttctctttgtgggtaagtttagaatttctattgctctccttaagttcactcatcttttcttctgactttttcgtttgcagctaatcctat----tgacttttccgtgttttttatctctggaatttttatgtggttcttctttgtatcatttttcttttcttatcatttttaagctttactttaagctcttgagaacatttat-aagagacaccttaaagttcttttctgagctgggtgtggtggcatgtgcctgtagtcacagccactcaggaggctgaggcaggagaatcactggagcccagaagtttgaggccagcctgggcaacataggcctcttt-aaaa--aaaaaaaaaaaagaaagaaataaaag-aaaacaa-aagttcttatttgaaagttccattatctatgtaatatctggatctatttttatatactt------ttagttatgggacacatgttttacatgtc--------------------------------tagtaattttttattagaaag-------tgtggatttcaggt---tgtatgtctggctttttcatcttcctttgaaaagacttgtcctttattctgacaagcaagtaacttatttACAGGTTTAGTTTCAAGTTTGTTTTTAGGCTTTTTAGAATGACTTTAGAGTAGTAGCTTCTACTTTTGGGTGACCTTTCTGAAGTCTATACTGAATGCCCCTTCTGTTCAGTGACAGCACT i rheMac8.chr13 C 0 I 220 s macFas5.chr13 4972887 888 - 111193037 tcggcattcgttgaccatcttggatctgagagtttatcatttttgtcaatttggggaaatttttggtcattatttcttcaggtattttttg-tg--tttt-ttctctttcctacttctggaacctcccaagtatacatactgcttaatattgccacagaagttactgaggatctgtttttgttattgtttttattttccagtctttttctctttgtggttaagtttagaatttctattgctctccttaagttcactcatcttttcttctgactttttcgtttgcagctaatcctat----tgacttttccgtgttttttatctctggaatttttatgtggttcttctttgtatcatttttcttttcttatcattttcaagctttactttaagctcttgagaacatttat-aagagacaccttaaagttcttttctgagctgggtgtggtggcgtgtgcctgtagtcacagccactcaggagtctgaggcaggagaatcactggagcccagaagtttgaggccagcctgggcaacataggcctcttt-aaaa--aaaaaaaaaaaaGAAAGAAATAAAAG-AAAAAAA-AAGTTCTTATTTGAAAGTTCCATTATCTATGTAATATCTGGATCTATTTTTATATACTT------TTAGTTACGGGACACATGTtttacatgtc--------------------------------tagtaattttttattagaaag-------tgtggatttcaggt---tgtatgtctggctttttcatcttcctttgaaaagacttgtcctttattctgacaagcaagtaacttatttacaggtttagtttcaagtttgtttttaggctttttagaatgactttagagtagtAGCTTCTACTTTTGGGTGACCTTTCTGAAGTCTATACTGAATGCCCCTTCTGTTCAGTGACAGCACT i macFas5.chr13 C 0 I 10 s macNem1.NW_012011978v1 3368037 884 + 3644372 tcggcattcgttgaccatcttggatctgagagtttatcatttttgtcaatttggggaaatttttggtcattatttcttcaggtattttttg-tg--tttt-ttctctttcctacttctggaacctcccaagtatacatactgcttaatattgccacagaagttactgaggatctgtttttgttattgtttttattttccagtctttttctctttgtggttaagtttagaatttctattgctctccttaagttcactcatcttttcttctgactttttagtttgcagctaatcctat----tgacttttccgtgttttttatctctggaatttttatgtggttcttctttgtatcatttttcttttcttatcattttcaagctttactttaagctcttgagaacatttat-aagagacaccttaaagttcttttctgagctgggtgtggtggtgtgtgcctgtagtcacagccactcaggaggctgaggcaggagaatcactggagcccagaagtttgaggccagcctgggcaacataggcctcttt-aaaa--aaaaaaaaaaaagaaag----aaaag-aaaaaaa-aagttcttatttgaaagatccattatctatgtaatatctggatctatttttatatactt------ttagttacgggacacatgttttacatgtc--------------------------------tagtaattttttattagaaag-------tgtggatttcaggt---tgtatgtctggctttttcatcttcctttgaaaagacttgtcctttattctgacaagcaagtaacttatttacaggtttagtttcaagtttgtttttaggctttttagaatgactttagagtagtAGCTTCTACTTTTGGGTGACCTTTCTGAAGTCTATACTGAATGCCCCTTCTGTTCAGTGACAGCACT i macNem1.NW_012011978v1 I 2979 I 6 s cerAty1.NW_012000820v1 3320843 887 - 10304083 tcggcattcgttgaccatcttggatctgagagtttatcatttttgtcaatttggggaaatttttggtcattatttcttcagatattttttg-tg--tttt-ttctctttcctacttctggaacct-ccaagtatacatactgcttaatattgccacagaagttactgaggatctgtttttgttattgtttttattttccagtctctttctctttgtggttaagtttaaaatttctattgctgtccttaagttcactcatcttttcttgtgactttttagtttgcagctaatcctat----tgacttttccgtgttttttatctctggaatttttatgtggttcttctttgtatcatttttcttttcttatcattttcaag-----ctttaagctcttgagaacatttat-aagagacaccttaaagttcttttctgagccgggtgtggtggcgtgtacctgtagtcacagccactcaggaggctgaggcaggagaatcactggagcccagaagtttgaggccagcctgggcaacataggcctctttaaaaa--aaaaaaaaaaaagaaagaaagaaaga-aaaaaaa-aagttcttatttgaaagttccattatctatgtaatatctggatctatttttatgtactttttctcttagttacagg--acatgttttacatgtc--------------------------------tagtaattttttattagaagg-------tgtggatttcaggt---tgtatgtctggctttttcatcttcctttgaaaagacttgtcctttattctgacaagcaagtaacttatttacaggtttagtttcaagtttgtttttaggctttttagAATGACTTTAGACTAGTAGCTTCTACTTTTGGGTGACCTTTCTGAAGTCTATACTGAATGCCCCTTCTGTTCGGTGACAGCACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3405192 889 - 107702431 tcggcattcgttgaccatcttggatctgagagtttatcatttttgtcaatttggggaaatttttggtcattatttcttcaggtattttttg-tg--tttt-ttctctttcctacttctggaacct-ccaagtatacatactgcttaatattgccacagaagttactgaggatctgtttttgttattgtttttattttccagtctttttctctttgtggttaagtttagaatttctattgctgtccttaagttcactcatcttttcttctgactttttagtttgcagctaatcctat----tgacttttccgtgtcttttatctctggaatttttatgtggttcttctttgtatcatttttcttttcttatcattttcaagctttacttaaagctcttgagaatatttat-aagagacaccttaaagttcttttctgagctgggtgtggtggcgtgtacctgtagtcacagccactcaggaggctgaggcaggagaatcactggagcccagaagtttgaggccagcctgggcaacataggcctcttt-aaaa--aaaaaaaaaaaGAAATAAA--TAAAA-GAAAAAA-AAGTTCTTATTTGAAAGTTCCATTATCTATGTAATATCTGGATCTATTTTTAGGTACTTTTTTTCTTAGTTACAGG--ACATGTtttacatgtc--------------------------------tagtaattttttattagaagg-------tgtggatttcaggt---tgtatgcctggctttttcatcttcctttgaaaagacttgtcctttattctgacaagcaagtaacttatttacaggtttagtttcaagtttgtttttaggctttttagaatgactttagagtagtAGCTTCTACTTTTGGGTGACCTTTCTGAAGTCTATAGTGAATGCCCCTTTTGTTCAGTGACAGCACT i chlSab2.chr14 C 0 I 6 s manLeu1.NW_012104432v1 926061 888 + 1565135 tcggcattcgttgaccatcttggatctgagagtttatcatttttgtcaatttggggaaatttttggtcattatttcttcaggcattttttg-tg--tttt-ttctctttcctacttctggaacctcccaagtatacatactgcttagtattgccacagaagttactgaggatctgtttttgttattgtttttattttccagtctttttctctttgtggttaagtttagaatttctattgctgtccttaagttcactcatcttttcttctgactttttagtttgcaactaatgctattcagtgacttttccgtgttttttatctctggaatttttatgtggttcttctttgtatcatttttcttttcttatcattttcaagctttactttaagctcttgagaacatttat-aagagacaccttaaagttcttttctgagccgggtgtggtggcgtgtgcctgtagtcacagccactcaggaggctgaggcaggagaatcactggagcccagaagtttgaggccagtctgggcaacatagtcctcttt-aaaa--aaaaaaaaaagaaa--------gaaa-agaaaaa-aagttcttatttgaaagttccattatctatgtaatatctggatctatttttatgtactttttctcttagttacagg--acatgttttacatgtc--------------------------------tagtaattttttattagaaag-------tgtggatttcaggt---tgtgtgtctggctttttcatcttcctttgaaaagacttgtcctttattctgacaagcaagtaacttatttacaggtttagtttcatgtttgtttttaggctttttagaatgactttagagtagtAGCTTCTACCTTTAGGTGACCTTTCTGAAGTCTATTCTGAATGCCCCTTCTGTTCAGTGACAGCACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3311462 885 - 13651311 ttggcattcgttgaccatcttggatctgagagtttatcatttttgtcaatttggggaaatttttggtcattatttcttcaggtattttttgttt--tttt-ttctctttcctacttctggaacct-ccaagtatacatactgcttaatattgccacagaagttactgaggatctgtttttgttattgtttttattttccagtctttttctctttgtggttaagtttagaatttctattgctgtccttaagttcactcatcttttcttctgactttttagtttgcaactaatgctattcagtgacttttccgtgttttttatctctggaatttttatgtggttcttctttgtatcatttttcttttcttatcattttcaagctttactgtaagctcttgagaacatttgt-aagagaccccttaaagttctcttctgagccgggtgtgctggcacttgcctgtagtcacagccactcaggaggctgaggcaggagaatcactggagcgcagaagtttgaggccagcctgggcaacataggcctcttt-aaaa--aaaaagaaagaaagaaaga--aaaga-aaaaaaa-aag-------ttaaaagttccattatctgtgtaatatctggatctatttttatgtactttttctcttagttatgggacacatgttttacatgtc--------------------------------tagtaattttttattagaagg-------tgtggatttcaggt---tgtgtgtctagctttttcatcttcctttgaaaagacttgtcctttattctga----caagtaacttatttacagatttagtttcatgtctgtttttaggctttttagaATGACTTTAGAGTAGTAGCTTCTACTTTTGGGTGACCATTCTGAAGTCTAGACTGAATGCTCCTTCTGTTCGGTGACAGCACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3397040 865 - 108792865 tcaggattcattggccttcttggatgggtgagtttataattttggtcaatttggggaaatttttggtcattatttcttcagggtttttttg-tggtttttcctctctctcctgcttctggaaact-ctggg--tgcatactgcttgatattgccagagaagttcctgagcatctgtttgtgtcattgtctttgctttccagtgttttcctctttgtggctgagtttaggatttctgttgctgtccttatgttcactcaccttttcttctgactttttagtttgcggctaaccctgttcagtgactttttcatgttttttatctctggaatttttacttggttcttttttgtatcatttttcttttcttatcattttcaagctttactttaaactcttgaaaacgtttat-cagaggcaccatcaagttcttttctgaGCCAGGtgtagtg---------------c-cagctactcaggaggccaaggcag--gaatcactggagcctgggagctggaggccagcctgggcaacatcggtctctta-aaaa--------aaa------------gaaag-aaaacaa-aaGTTCTTATCTGAAAGTTTCATTAtctatgtgatatgtggacctgtgtttatgtgatttttctctcacttaggggacacatgttttgtatgtc--------------------------------tgaaaactttttattgaagggtggatgttgtggacgtcatgt---tgtgtgtctagctttttcatcttccttcaaaaagacttgccctttattctgat-agcaagtggcttatttgcagatttagtttcatatttgttttta--ctgtttagagtgcctttagagtagtagcttctactcttgagtagcctttctgaagtctctactgactggccc-tctgttcagtgagagcact i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3060384 920 - 7082604 ttgggattcattggccttcttggatctgtgagtttatcatttttgtcaatttggggaaattttgggtcattatttcctcaggttttttttg-ttgttttt-ctctctctcctacttctggaaacc-ccagg--tacatactgcttgatattgccaaagaagtgactgagtgtctgtttgtgttgttgtctttacttttcagtcttttcctctttgtggttaagtttagaatttctgttgctgtccttaagttcacttatcttttcttctgactttttagtttgcagctaatccttttcagtgactttttcatgttttttatcactggaatttttacttggttcttttttgtatcatttttcttttcttatcattttcaagctctactttaaactctcgagaacatttat-aatcgacaccttaaagttcttttctgagccaggtgtagtggcatatgcccgcagtc-cagctactcaggaggccggggcag--gaatccctgcatcccaggagttggaggctagcctgggcaacgtaggtctctta-aaaa---gagagaga------------gaaag-aaaacaagaagttcttatctgaaagtttcattatctatgtaatatgtggacctgtgtttatgtaatttttctcttactcatgggacacatgttttgtATGTCTTTTTATTAAAGGGTGGACATTTATTAAAGGGTGGACACCttttattaaagggtggacattgtggatgtcatgttgctgtgtgtctagcttttttatcttcctttgaaaagacttgccctttattctgat-agcaagtgatttatttacagatttagtttcatgtttgttttta--ctttttagagtgcctttagagtagtagcatctactcttgagtggcctttctgaagtctctactgaatgcctc-tctgttcagtgagagcatt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 546085 882 + 5243153 tcgggattcattggccttcttggatctgtgagtttatcatttttgtcaatttggggaaatttttggtcattatttcctcaggttttgtttg-ttgttttt-ctctctctcctacttctggaaact-cctgg--tacatactgcttgatattgccaaagaagttactgagcatctgtttgtgttattgtctttacttttcagtcttttcctctttgtggttaagtttagaatttctgttgctgtccttaagttcacttatcttttcttctgactttttagtttgcagctaatcctgttcagtgactttttcatgttttttatctctggaatgtttacttggttcttttttgtatcatttttcttttcttatcattttcaagctttactttaaactcttgacaacgtttat-aagagacaccttaaagttcttttctgaGCCAggtggcgta-----tgcccgcagtc-cagctactcaggaggccgaggcag--gaatcactggagcccaagaattggaggccagcctgggcaacataggtctctta-aaaaaaaaaaaaaaa------------gaaaG-AAAACAa-aagttcttatctgaaagtcccattatctatgtaatatgtggacctgtgtttatgtaatttttctcttacttatgggacacatgttttgtatgtc--------------------------------taataattttttattaaagggtggacattgtggatgtcatgt---tgtgtgtctagcttctttatcttccttcgaaaagacttgccctttattctgat-agcaagtgacttatttacagatttagtttcatgtttgttttta--cttttcagaGTGCCTTTAGCGTAGTAGCGTCCACTCTTGAGTGGCCTTTCTGAAGCCTCTACTGAATGCCCC-TCTGTTCAGTGAGAGCACT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1875282 875 - 1938448 ttgggattccttggccttcttggatctgtgagtttatcacttttgtcaatttggggaaatttttggtcattatttcttcagggtttttttg-ttgttttt-ttctctctcctgcttctggaaact-ccagg--tacatactgctcgatattgccaaagaagttcctgagcatctgtttgtgtta--------------cagccttttcctctttgtggttaagtttagaatttctgttgctgtccttaagttcacttgtcttttcttctgactttttagtttgcagctaatcctgttcagtgactttttcttgttttttatctctggaatttttacttggttcttttttgtatcatttttcttttcttatcattttcaagctctactctaaactcttgagaacgtttat-aagagacaccttaaagttcttttccgagcccggtgtagtggcatatgcctgcagtc-cagctactcaggaggccgaggcag--gaatcactggagcccaggagttggaggccagcctgggcaacataggtctctta-aaaa--aaagaaaaa------------gaaag-aaaacaaaaagttcttatctgaaagttccattatctatgtaatatgtggacctgtgtttatgtaatttttctcttacttatgagacacatgttttgtgtgtc--------------------------------taataattttttattaaagggtggacgttgtggatgtcatgttgttgtgtgtctagcttttttatcttccttcaaaaagacttgccctttattctgat-agcaagtgacttatttacagatttagtttcatgtttgttttta--ctttttagaGTGCCTTTAGAGTAGTAGCGTCTACTCTTGAGTGGCCTTTCTGAAGTCTCTAGTGAATGCCCC-TCTGTTCCGTGAGAGCACT i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I a score=-10881.000000 s hg38.chr2_KI270769v1_alt 5445 3 + 120616 AAA- s panTro5.chr2A 3442822 3 + 111504155 AAA- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3329576 3 + 114371477 AAA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 202967 3 + 637652 AAA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3002632 3 + 81552678 CCA- i nomLeu3.chr19 C 0 I 73 s macFas5.chr13 4973785 1 - 111193037 --A- i macFas5.chr13 I 10 I 65 s manLeu1.NW_012104432v1 926949 3 + 1565135 CCA- i manLeu1.NW_012104432v1 C 0 I 1 s calJac3.chr14 3397905 4 - 108792865 ctac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3061304 4 - 7082604 ctgc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 546967 4 + 5243153 CTAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1876157 4 - 1938448 CTAC i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e colAng1.NW_012118821v1 3312347 0 - 13651311 C e chlSab2.chr14 3406081 6 - 107702431 I e cerAty1.NW_012000820v1 3321730 0 - 10304083 C e macNem1.NW_012011978v1 3368921 6 + 3644372 I e rheMac8.chr13 3260541 220 + 108979918 I a score=11264.000000 s hg38.chr2_KI270769v1_alt 5448 2 + 120616 CA s panTro5.chr2A 3442825 2 + 111504155 CA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3329579 2 + 114371477 CA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 202970 2 + 637652 CA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3002708 2 + 81552678 CA i nomLeu3.chr19 I 73 C 0 s rheMac8.chr13 3260761 2 + 108979918 CA i rheMac8.chr13 I 220 C 0 s macFas5.chr13 4973851 2 - 111193037 CA i macFas5.chr13 I 65 C 0 s manLeu1.NW_012104432v1 926953 2 + 1565135 CG i manLeu1.NW_012104432v1 I 1 C 0 s calJac3.chr14 3397909 2 - 108792865 ca i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3061308 2 - 7082604 ca i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 546971 2 + 5243153 CA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1876161 2 - 1938448 CA i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e colAng1.NW_012118821v1 3312347 0 - 13651311 C e chlSab2.chr14 3406081 6 - 107702431 I e cerAty1.NW_012000820v1 3321730 0 - 10304083 C e macNem1.NW_012011978v1 3368921 6 + 3644372 I a score=240769.000000 s hg38.chr2_KI270769v1_alt 5450 50 + 120616 TGGCAGACCCACAGTCAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTG s panTro5.chr2A 3442827 50 + 111504155 TGGCAGACCCACAGTCAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3329581 50 + 114371477 TGGCAGACCCACAGTCAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 202972 50 + 637652 TGGCAGACCCACAGTCAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3002710 50 + 81552678 TGGCAGACCCACACTCAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3260763 50 + 108979918 TGGCAGACCCACACTCAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4973853 50 - 111193037 TGGCAGACCCACACTCAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3368927 50 + 3644372 TGGCAGACCCACACTCAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTG i macNem1.NW_012011978v1 I 6 T 56 s chlSab2.chr14 3406087 50 - 107702431 TGGCAGACCCACACTCAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTG i chlSab2.chr14 I 6 T 56 s manLeu1.NW_012104432v1 926955 50 + 1565135 TGGCAGATCCACACTCAGAACCTTTCAGCCCTGTGTGAGCTCTGGGCTTG i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3397911 19 - 108792865 tggcaggcccacactcagc------------------------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3061310 19 - 7082604 gggcagacccacactcagc------------------------------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 546973 22 + 5243153 TGGCAGGCCCACACTCAGCACC---------------------------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1876163 28 - 1938448 TGGCAGACCCACACTCAGCACCCTTCAG---------------------- i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I e colAng1.NW_012118821v1 3312347 0 - 13651311 C e cerAty1.NW_012000820v1 3321730 0 - 10304083 C a score=1540712.000000 s hg38.chr2_KI270769v1_alt 5500 207 + 120616 CCAGCTCACAGGACTCTGTCCATGGCAGACCCACACTCAACACCCCACAGCCCTGTGTGAGCTCTGGGCTTGTCAGCTCACAGCACCTCATCCTTTCCTGCCT-TCAGAGCTGCACTCTCTGCACATACAGCTG---AGTG-TCAGCAGTAAACTCAAGGGCTCCCACACAAACCCTTTCTCTGCTTAGCTCCCTCCTTTCTAGATCTCTGG s panTro5.chr2A 3442877 208 + 111504155 CCAGCTCACAGGACTCTGTCCATGGCAGACCCACACTCAACACCCCACAGCCCTGTGTGAGCTCTGGGCTTGTCAGCTCACAGCACCTCATCCTTTCCTGTCT-TCAGAGCTGCACTCTCTGCACATACAGCTG---AGTGATCAGCAGTAAACTCAAGGGCTCCCACACAAACCCTTTGTCTGCTTGGCTCCCTCCTTTCTAGATCTCTGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3329631 208 + 114371477 CCAGCTCACAGGACTCTGTCCATGGCAGACCCACACTCAACACCCCACAGCCCTGTGTGAGCTCTGGGCTTGTCAGCTCACAGCACCTCATCCTTTCCTGTCT-TCAGAGCTGCACTCTCTGCACATACAGCTG---AGTGATCAGCAGTAAACTCAAGGGCTCCCACACAAACCCTTTGTCTGCTTGGCTCCCTCCTTTCTAGATCTCTGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 203022 208 + 637652 CCAGCTCACAGGACCCTGTCCATGGCAGACCCACACTCAACACCCCACAGCCCTGTGTGAGCTCTGGGCTTGTCAGCTCACAGCACCCCATCCTTTCCTGTCT-TCAGAGCTGCACCCTCTGCACATACAGCTG---AGTGATCAGCAGTAAACTCAAGGGCTCCCACACAAACCCTTTCTCTGCTTAGCTCCCTCCTTTCTAGATCTCTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3002760 208 + 81552678 CCAACTCACAGCGCCCTGTCCATGGCAGACCCACACTCCACACCCCGCAGCCCTGTGTGAGCTCTGGGCTTGCCAGCTCACAGCACCCCATCCTTTCCTGTCT-TCAGAGCTGTACCCTCTGCACATACAGCTG---AGTGATCAGCAGTAAACTCAAGGGCTCCCACACAAATCCTTTTTCTGCTTAGCTCCCTCCTTTCTAGATCTCTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3260813 208 + 108979918 CCAGCTCACAGCGCCCCGTCCATGGCAGACCCACACTCAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTGCCAGCTCACAGCGCCCCGTCCTTTCCAGTCT-TCAGAGCTGCACCATCTGCACATATAGCTG---AGTGATCAGCAGTAAACTCAAGGGCTCCCACACAAACCCTTTCTCTGCTTAGCTCCTTCCTTTCTAGGTCTCTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4973903 208 - 111193037 CCAGCTCACAGCGCCCCGTCCATGGCAGACCCACACTCAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTGCCAGCTCACAGCGCCCCGTCCTTTCCAGTCT-TCAGAGCTGCACCATCTGCACATATAGCTG---AGTGATCAGCAGTAAACTCAAGGGCTCCCACACAAACCCTTTCTCTGCTTAGCTCCTTCCTTTCTAGGTCTCTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3368921 192 + 3644372 CCA----------------CCGTGGCAGACCCACACTCAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTGCCAGCTCACAGCGCCCCGTCCTTTCCAGTCT-TCAGAGCTGCACCATCTGCACATATAGCTG---AGTGATCAGCAGTAAACTCAAGGGCTCCCACACAAACCCTTTCTCTGCTTAGCTCCTTCCTTTCTAGGTCTCTGG i macNem1.NW_012011978v1 T 56 C 0 s cerAty1.NW_012000820v1 3321730 192 - 10304083 CCA----------------CCGTGGCAGATCCACACTCAGCACCTTTCAGCCCTGTGTGAGCTCTGGGCCTGCCAGCTCACAGCACCCCATCCTTTCCAGTCT-TCAGAGCTGCACCGTCTGCACATATAGCTG---AGTGATCAGCAGTAAACTCAAGGGCTCCCACAGAAACCCTTTCTCTGCTTAGCTCCCTCCTTTCTAGGTCTCTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3406081 192 - 107702431 CCA----------------CCGTGGCAGACCCACACTCAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTGCCAGCTCACAGCGCCCCGTCCTTTCCAGTCT-TCAGAGCTGCACCCTCTGCACATATAGCTG---AGTGATCAGCAGTAAACTCAAGGGCTCCCACACAAACCCTTTCTCTGCTTAGCTCCCTCCTTTCTAGGTCTCTGG i chlSab2.chr14 T 56 C 0 s manLeu1.NW_012104432v1 927005 208 + 1565135 CCAACTCACAGCGCCCCGTCCATGGCAGACCCACACTGAGCACCCTTCAGCCCTGTGTGAGCTCTGGGCTTGCCAGCTCACAGCGCCCCGTCCTTTCCAGTCT-TCAGAGCTGCACCCTCTGCACATATAGCTG---AGTGATCAGCAGTAAACTCAAGGGCTCCCACAGAAACCCTTTCTCTGCTTAGCTCCCTCCTTTCTAGGTCTCTGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3312347 192 - 13651311 CCA----------------CCGTGGCGGACCCACACTCAGCACCCCGCAGCCCTGTGTGAGCTCTGGGCTTGCCAGCTGACAGCGCCCCGTCCTTTCCAGTCT-TCAGAGCTGCACCCTCTGCACATATAGCTG---AGTGATCAGCAGTAAACTCAAGGGCTCCCACAGAAACCCTGTCTCTGCTTAGCTCCCTCTTGTCTAGGTCTCTGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3397930 167 - 108792865 -----------------------------------------gcccttcagccctgcgtgagctctgggcTGGCCAACTCCCAGCACCCCGTCCTTTCCAGACAGACAGAGCTGCGCCCTGCGCA-ATACAGCTGCTTAGTGATCGGCAGTGAACCCAAGG-CTCCCACGCAAACCCTTTGTCTGCTTAGCTCCCTCC-TTCCAGGTC-TCGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3061329 166 - 7082604 -----------------------------------------accc-tcagccctgcgtgagCTCT-GGCTGGCCAGCTCCCAGCGCCCTG-CCTTCCCAGTCCGTCAGAGCTGCACCCTGTGCGCATACAGCTGCTTAGTGATCGGCAGGGAACCCAGGG--GCTCACACAAACCCTTTCTCTGCTTAGCTCCCTCCTTTCCAGGTCTTTGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 546995 167 + 5243153 -------------------CTCAGCCCTGCGTGAGCTCTGGGCT--------------------------GGCCAGCTCCCAGCGCCCTGTCCTTTCCAGTCAGTCAGAGCTGCACCCTGTGCGCATACAGCTGCTTAGTGATGGGCAGTGAACCCAGGGGCTCCCACACAAACCCTTTCTCTGCTTAGCTCCCTCTTTTCCAGGTCTCTGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1876191 162 - 1938448 --------CCCTGCGTGAGCTCTG------------------------------------------GGCTGGCCAGCTCCCAGCACCCTGTCCTTTCTAGTCAGTCAGAGCTGCACCCTGTGCACATACAGCTGCTTAGTGATCGGCAGTGAACCCAAGGGCTCCCACACAAACCCTTTCTCTGCTTAGCTCCCTCCTTTCCAGGTCTCTGG i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482474 119 + 5252280 I a score=908405.000000 s hg38.chr2_KI270769v1_alt 5707 80 + 120616 ATATAAGAATTATCCAGTTTGTAAGTATGTTCCAAAACCATTTTCTAGTAAATTATGTTATAAATTGTAGCTGGGTTTTT s panTro5.chr2A 3443085 80 + 111504155 ATATAAGAATTATCCAGTTTGTAAGTATGTTCCAAAACCATTCTCTAGTAAATTATGTTATAAATTGTAGCTGGGTTTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3329839 80 + 114371477 ATATAAGAATTATCCAGTTTGTAAGTATGTTCCAAAACCATTCTCTAGTAAATTATGTTATAAATTGTAGCTGGGTTTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 203230 80 + 637652 ATATAAGAATTATCCAGTTTGTAAGTATGTTCCAAAACCATTTTCTAGTAAATTATGTTATAAATTGTAGCTGGGTTTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3002968 80 + 81552678 ATAGAAGAATTATCCAGTTTGTAAGTAGGTTCCAAAATCATTTTCTAGTAAATTATGTTATACATTGTAGCTGGGTTTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261021 80 + 108979918 ATATAAGAATTATCCAGTTTGTAAGTAGGTTCCAAAACCATTTTCTAGTATATTATGTTATAAATTGTAGCTGGGTTTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4974111 80 - 111193037 ATATAAGAATTATCCAGTTTGTAAGTAGGTTCCAAAACCATTTTCTAGTATATTATGTTATAAATTGTAGCTGGGTTTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3369113 80 + 3644372 ATATAAGAATTATCCAGTTCGTAAGTAGGTTCCAAAACCATTTTCTAGTATATTATGTTATAAATTGTAGCTGGGTTTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3321922 80 - 10304083 ATATAAGAATTATCCAGTTTGTAAGTAGGTTCCAAAACCATTTTTTAGTATATTATGTTATAAATTGTAGCTGGGTTTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3406273 80 - 107702431 ATATAAGAATTATCCAGTTTGTAAGTAGGTTCCAAAACCATTTTTTAGTAAATTATGTTATAAATTGTAGCTGGGTTTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 927213 80 + 1565135 ATATAAGAATTATCCAGTTTGTAAGTAGGTTCCAAAACCATTTTTTAGTAAATTATGTTATAAATTGTAGCTGGGTTTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3312539 80 - 13651311 ATATAAGAATTATCCAgtttgtaagtaggttccaaaaccattttctagtaaattatgttataaattgtagctgggttttt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398097 80 - 108792865 ATATAAGAATTACCCAGTTTGTAAGCAGGTTCCCAAAGCATTTTCCAGTAAATCATGTTATAAATTGTAGCTGGGTGTTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3061495 80 - 7082604 ATATGAGAATTATCCAGTTTGTAAGCAGGTTCCAAAGCCATTTTCTAGTAAATTATGTTATAAATTGTAGCAGGGTTTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 547162 80 + 5243153 ATATAAGAATTATCCAGTTTGTAAGCAGGTTCCAAAACCATTTTCTAGTAAATTATGTTATAAATTGTAGCGGGGTTTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1876353 80 - 1938448 ATATAAGAATTATCCAGTTTGTAAGTAGGTTCCAAAACCATTTTCTAGTAAATTATGTTATAAGTTGTAGCTGGGTTTTT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2482593 80 + 5252280 ATACAGGAATTACCCAACTTGTAAGCAGAGTCCAAACCCATTTTCTAGTAAACTATGTGATAAATTGTAGGTAGGTCttt i otoGar3.GL873658 I 119 I 2416 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I a score=966304.000000 s hg38.chr2_KI270769v1_alt 5787 120 + 120616 AGAATAAACCACAAAGGATTATGTAGGTGGAACTTATTATATAGAGATAA---TGTATATTCTTTCTGACACATACACTCTCACACTTTCTCTGTCTCCCATTGTTGTTAATAATTTAGCAAA s panTro5.chr2A 3443165 120 + 111504155 AGAATAAACCACAAAGGATTATGTAGGTGGAACTTATTATATAGAGATAA---TGTATATTCTTTCTGACACATACACTCTCACACTTTCTCTGTCTCCCATTGTTGTTAATAATTTAGCAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3329919 120 + 114371477 AGAATAAACCACAAAGGATTATGTAGGTGGAACTTATTATATAGAGATAA---TGTATATTCTTTCTGACACATACACTCTCACACTTTCTCTGTCTCCCATTGTTGTTAATAATTTAGCAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 203310 120 + 637652 AGAATAAACCACAAAGGATTATGTAGGTGGAACTTATTATATAGAGATAA---TGTATATTCTTTCTGACACATACACTCTCACACTTTCTCTGTCTCCCATTGTTGTTAATAATTTAGCAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003048 123 + 81552678 AGAATAAACCACAAAGAATTATGTAGGTGGAACTTATTATATAGAGATAATGTTGTATATTCCTTCTCACACATACACTCTCACACTTTCTCTGTCTCCCATTGTTGTTAATAGTTTAGCAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261101 115 + 108979918 AGAGTAAACCACAAAGGATTATGTAGGTGGAAC---TTATATAGAGATAATGTTGTATATTCTTTCTCACACATATACTGTCACACTTTCCCT-----CCATTGTTGCTAGTAATTTAGCAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4974191 115 - 111193037 AGAGTAAACCACAAAGGATTATGTAGGTGGAAC---TTATATAGAGATAATGTTGTATATTCTTTCTCACACATATACTGTCACACTTTCCCT-----CCATTGTTGCTAGTAATTTAGCAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3369193 115 + 3644372 AGAGTAAACCACAAAGGATTATGTAGGTGGAAC---TTATATAGAGATAATGTTGTATATTCTTTCTCACACATATACTGTCACACTTTCCCT-----CCATTGTTGCTAGTAATTTAGCAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322002 115 - 10304083 AGAGTAAACCACAAAGGATTATGTAGGTGGAAC---TTATATAGAGATAATGTTGTATATTCTTTCTCACACATATACTCTCACACTTTCCCT-----CCATTGTTGCTAGTAATTTAGCAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3406353 115 - 107702431 AGAGTAAACCACAAAGGGTTATGTAGGTGGAAC---TTATATAGAGATAATGTTGTATATTCTTTCTCACACATATACTCTCACACTTTCCCT-----CCATTGTTGCTAGTAATTTAGCAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 927293 109 + 1565135 AGAGTAAACCACAAAGGATTATGTAGGTGGAAC---TTATATAGAGATAATGTTGTATATTCTTTCTCACACATAT------ACACTTTCCCT-----CCATTGTTGCTAGTAATTTAGCAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3312619 115 - 13651311 agagtaaaccacaaaggattatgtaGGTGGAAC---TTATATAGAGATAATGTTGTCTATTCTTTCTCACACGTACACTCTCACACTTTTCCT-----CCATTGTTGCTAGTAATTTAGCAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398177 115 - 108792865 AGAATAAACCACAAAGGACTGCATAGGTGGGATTTGTTACACAGAGAGAA---CGCAGATTCTTTCTCACGCATACCCT-TCACACTTTCTCT----CCTGCTGTTGTTAGTAGTTTAGTAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3061575 116 - 7082604 ATAATAAACCACAAAGGACTACGTAGACGGAATTTATTATATAGAGAAAG---CGTATATTCTTTCTCACACATACACTCTTGCACTTTCTCA----CCTGTCGTTGTTAGTAATTTAGTAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 547242 116 + 5243153 AGAATAAACCACAAAGGACTGCATAGGTGGAATTTATTTTATAGAGAGAA---CGTCTATTCTTTCTCACACATACACTCTCACACTTTCTCG----CCTGTCGTTGTTAGTAATTTAGTAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1876433 116 - 1938448 AGAATAAACCACAAAGGACTGCATAGGTGGAATTTATTATATAGAGAGAA---TGTATATTCTTTCTCACACATACACTCTCACACTTCCTCA----CCTGTCGTTGTTAGTAATTGAGTCAA i aotNan1.NW_018507213v1 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2482673 2416 + 5252280 I a score=369127.000000 s hg38.chr2_KI270769v1_alt 5907 44 + 120616 ATAAGAATGTTGGGAAAGCATATTTGAGTACAGTCTCAAGCTCA s panTro5.chr2A 3443285 44 + 111504155 ATAAGAATGTTGGGAAAGCATATTTGAGTACAGTCTCAACCTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330039 44 + 114371477 ATAAGAATGTTGGGAAAGCATATTTGAGTACAGTCTCAACCTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 203430 44 + 637652 ATAAGAATGTTGGGAAAGCACATTTGAGTACAGTCTCAAGCTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003171 44 + 81552678 ATAAGAATGTTGGGAAAGCATATTTGAGTACAGTCTCAACCTCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261216 37 + 108979918 ATAAGAACGTTGGGAAAGCATATTTGGGTACAGTCTC------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4974306 37 - 111193037 ATAAGAATGTTGGGAAAGCATATTTGAGTACCGTCTC------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3369308 37 + 3644372 ATAAGAATGTTGGGAAAGCATATTTGAGTACAGTCTC------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322117 44 - 10304083 ATAAGAATGTTGGGAAAGCATATTTGAGTACAGTCTCAACCTCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3406468 44 - 107702431 ATAAGAATGTTGGGAAAGCATATTTGAGCACAGTCTCAACCTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 927402 44 + 1565135 ATAAGAATGTTGGGAAAGCATATTTGAGTACAGTCTCAACCACC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3312734 44 - 13651311 ATAAGAATGTTGGGAAAGCATATTTGAGTACAGTCTCAGCCTCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398292 37 - 108792865 AGAAGAATGTTGGGAAAGCGTATTTGAGCACAGCCTC------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3061691 37 - 7082604 ATAAGGATGTTGGGAAAGCGTATGTGAGTACAGTCTA------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 547358 37 + 5243153 ATAAGAATGTTGGGAAAGCATATTTGAGTACAGTCTC------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1876549 37 - 1938448 ATAAGAATGTTGGGAAAGTGTATTTGAGTACAGCCTC------- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2485089 38 + 5252280 atgagaatgt------gtcatagctcactgcaacctcaaactcc i otoGar3.GL873658 I 2416 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I a score=2030594.000000 s hg38.chr2_KI270769v1_alt 5951 232 + 120616 TCAGCCCACCCGCCTTAACCTCCTTGATGTCCCAAACCCTGCTTGGGATTCT-------------CCTCCTGCAATGTGGTCCAAAAAGTGCCA-----TTGGGTTCAAG-----------AGTTCAACTCATGT-TTTCCTTCTGTTGGGTCACAGTCCTTTGCTGTGTCTGAAGACAGTTGTTAGATTTCTTCTGAGCAATGTTGCAGTTGTTCAC-ATCAAGAC----AGTCCAGTCCCAGTTACCCTGAAATGGACAGAAGCA-- s panTro5.chr2A 3443329 232 + 111504155 TCAGCCCATCCGCCTTAACCTCCTTGACGTCCCAAACCCTGCTTGGGATTCT-------------CCTCCTGCAATGTGGTCCAAAAAGTGCCA-----TTGGGTTCAAG-----------AGTTCAACTCATGT-TTTCCTTCTGTCGGGTCACAGTCCTTTGCTGTGTCTGAAGACAGTTGTTAGATTTCTTCTGAGCAACGTTGCAGTTGTTCAC-ATCAAGAC----AGTCCAGTCCCAGTTACCCTGAAATGGACAGAAGCA-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330083 232 + 114371477 TCAGCCCATCCGCCTTAACCTCCTTGACGTCCCAAACCCTGCTTGGGATTCT-------------CCTCCTGCAATGTGGTCCAAAAAGTGCCA-----TTGGGTTCAAG-----------AGTTCAACTCATGT-TTTCCTTCTGTCGGGTCACAGTCCTTTGCTGTGTCTGAAGACAGTTGTTAGATTTCTTCTGAGCAATGTTGCAGTTGTTCAC-ATCAAGAC----AGTCCAGTCCCAGTTACCCTGAAATGGACAGAAGCA-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 203474 232 + 637652 TCAGCCCATCCGCCTTAACCTCCTTGATGTCCCAAACCCTGCTTGGGATTCT-------------CCTCCTGCAGCGTGGTCCAAAAAGTGCCA-----TTGGGTTCAAG-----------AGTTCAACTCATGT-TTtccttctgtcgggtcacagtcctttgctgtatctgaagacagttgttagatttcttctgagCAATGTTGCAGTTGTTCAC-ATCAAGAC----AATCCAGTCCCAGTTACCCTGAAATGGACAGAAGCA-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003215 232 + 81552678 TCAGCCCGTCCGCCTTAACCTCCTTGACGTCCCAAACCCTGCTTGGGATTCT-------------CCTCCTGCAGTGTGGTCCGAAAAGTGCCA-----TTGGGTTCAAG-----------AGTTCAACTCATGT-TTtcctcctgtcgggtcacagtcctttgctgtgtctgaagacagctgttagatttcttctaagCAATGTTGCAGTTGTTCAC-ATCAAGAC----AGTCCAGTCCCAGTTACCCTGAAATGGACAGAAGCA-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261253 213 + 108979918 ----------------AACCTCCTTGACATCCGAAGCCCTGCTTGGGATT----------------CTCCTGCAGTGTGGTCCAAAAAGTGCCA-----TTGGGTTCAAG-----------AGTTCAAGTCATGT-TTTCCTTCTCTCGGGTCACAGTCCTTTGCTGTGTGTGAAAACAGTTGTTAGATTTCCTCTGAGCAATATTGCAGTTGTTCAC-ATCAAGAC----AGTCCAGTCCCAGTTACCCTGAAATGGATAGAAGAA-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4974343 213 - 111193037 ----------------AACCTCCTTGACATCCGAAGCCCTGCTTGGGATT----------------CTCCTGCAGTGTGGTCCAAAAAGTGCCA-----TTGGGTTCAAG-----------AGTTCAAGTCATGT-TTTCCTTCTCTCTGGTCACAGTCCTTTGCTGTGTGTGAAAACAGTTGTTAGATTTCCTCTGAGCAATATTGCAGTTGTTCAC-ATCAAGAC----AGTCCAGTCCCAGTTACCCTGAAATGGATAGAAGAA-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3369345 213 + 3644372 ----------------AACCTCCTTGACATCCGAAGCCCTGCTTGGGATT----------------CTCCTGCAGTGTGGTCCAAAAAGTGCCA-----TTGGGTTCAAG-----------AGTTCAAGTCATGT-TTTCCTTCTCTCGGGTCACAGTCCTTTGCTGTGTGTGAAAACAGTTGTTAGATTTCCTCTGAGCAATATTGCAGTTGTTCAC-ATCAAGAC----AGTCCAGTCCCAGTTACCCTGAAATGGATAGAAGAA-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322161 229 - 10304083 TCAGCCCGTCCGCCTTAACCTCCTTGACATCCCAAGCCCTGCTTGGGATT----------------CTCCTGCAGTGTGGTCCAAAAAGTGCCA-----TTGGGTTCAAG-----------AGTTCAAGTCATGT-TTTCCTTCTCTCGGGTCACAGTCCTTTGCTGTGTGTGAAGACAGTTGTTAGATTTCCTCTGAGCAATATTGCAGTTGTTCAC-ATCAAGAC----AGTCCAGTCCCAGTTACCCTGAAATGGAGAGAAGAA-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3406512 229 - 107702431 TCAGCCTGTCCACCTTAACCTCCGTGACATCCCAAACCCTGCTTGGGATT----------------CTCCTGCGGTGTGGTCCAAAAAGTGCCA-----TTGGGTTCAAG-----------AGTTCAAGTCATGT-TTTCCTTCTCTCGGGTCACAGTCCTTTGCTGTGTGTGAAGACAGTTGTTAGATTTCCTCTGAGCAATATTGCAGTTGTTCAC-ATCAAGAC----AGTCCAGTCCCAGTTACCCTGAAATGGATAGAAGAA-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 927446 229 + 1565135 TCAGCCCGTCCACCTTAACCTCCTTGACATCCCAAACCCTGCTTGGGATT----------------CTCCTGCAGTGTGGTCCAAAAAGTGCCA-----TTGGGTTCAAG-----------AGTTCAAGTCATGT-TTtccttctctcgggtcacagtcctttgctgtgtgtgaagacagttattaggtttcctctgagCAATATTGTAGTTGTTCAC-ATCAAGAC----AGTCCAGTCCCAGTTACCCTGAAATGGAGAGAAGAA-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3312778 229 - 13651311 TCAGCCCGTCCACCTTAACCTCCTTGACATCCCAAACCCTGCGTGGGATT----------------CTCCTGCAATGTGGTCCAAACAGTGCCA-----TTGGGTTCAGG-----------AGTTCAAGTCATGT-TTTCCTTCTCTGGGGTCGCAGTCCTTTGCTGTGTGTGAAGACAGTTGTTAGATTTCCTCTGAGCAATGTTGCAGTTGTTCAC-CTCAAGAC----AGTCCAGTCCCAGTTACCCTGAAATGGATAGAAGAA-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398329 202 - 108792865 ----------------AACCTCCTTGGCGTCCCAA----------------C-------------CCTCCCGCGCAGTGGTCCAAACAGTGCCA-----TTGGGCTCAAG-----------GGCTCAA--CACGT-TTTCCTTCTGTCGGGTCACAGTCCTTTCCTGCGCCTGACGACGGTTGTTAGATTTATTGTGAGCAGTGCTGCAGCTGTTAAC-ATCAGGATGTTGAGTCCAGTCCCGCTTAGCCTGAAATGGACAGAGCAG-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3061728 219 - 7082604 ----------------AACCTCCTTGACTTCCCAAACCCTGCTTGGGAGTCT-------------CCTCCTGCACAGTGGTCCAAACAGTGCCA-----TTGGGTTCAAG-----------GGCTCAACTCATGT-TTTCCTTTTGTC-AGTCACAGTCCTGTCCTGTGTCTGAAGATGGTTGTTAGATTTATTCTGAGCAGTGCTGCAGGTGTTAAC-ATCAAGATGTTGAGTCTAGTCCCGCTTAGCCCGAAATGGACAGAGCAG-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 547395 214 + 5243153 ----------------AACCTCCTTGATGTCCCAAACCCTGCTTGGG-------------------CCCCCGCACAGTGGTCCAAACAGTGCCA-----TTGGGTTCAAG-----------GGCTCAACTCACGT-TTTCCTTCTGTC-AGTCACAGTCCTTTCCTGTGTCCGAAGACGGTTGTTAGATTTATTCTGAGCAGTGCCACAGGCGTTAACAATCAAGGTGTTGAGTCCAGTCCCGCTTAGCCCGAAATGGGCAGAGCAG-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1876586 220 - 1938448 ----------------AACCTCCTTGACGTCCCAAACCCTGCTGGGGATTCT-------------CCTCCCGCACAGTGGTCCGAACAGTGCTA-----TTGGGTTCAAG-----------GGCTCAACTCACAC-TTTCCTTCTGTCAGGTCACAGTCCTTTCCTGTGTCTGAAGACGGTTGTTAGATTTATTCTGAGCAGTGCTGCAGGCGTTAGC-ATCAAGGTGTTGAGTCCAGTCCCGCTTAGCCCGAAAAGGACAGATCAG-- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2485127 255 + 5252280 tgggctcagcc-----agtcctcctgttaccc--aggcgggtcttgaattcctagcctcaagtaacctcttgccttgtcctcccaa-agtgctaggatggcaggtgcgggccatgtgcccaaccTCAACTCATTT-TTCCCGTCTCTCAGATAACAGTCTTGT-CTGTGTCTGAAAACAGTTGTTAAA-TTCTGTTGTCCAGTGTGGTGGTTGTTCAG-AGTAGGACAGTGAGTCCAGGCCTCTGCTCTCAGAGACAGACACAAGCA-- i otoGar3.GL873658 C 0 I 814 s canFam3.chr17 2005022 208 + 64289059 tctgtctcctcacctcagcaagcttg-----ccacgctctgcttgggACT----------------CTTC-ACACTGTGCTCCAAA-TGTGCCT-----TTGAGTTCAAG-----------AGTTCAAGTCCTCTGTCCCCTTATCTCAGACCCCAGCCCTCTTCTGTGTCTGAACACAATCGCTTCATCCCTTTT-----------------CTCAC-ACTAGGAC----AGTCCAGTCTCAGTCACTCTGTAACAGACAGAAGCAGA i canFam3.chr17 N 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I a score=71713.000000 s hg38.chr2_KI270769v1_alt 6183 9 + 120616 AA-TTACTGC s panTro5.chr2A 3443561 9 + 111504155 AA-TTACTGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330315 9 + 114371477 AA-TTACTGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 203706 9 + 637652 AA-TTACTGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003447 9 + 81552678 AA-TTACTGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261466 9 + 108979918 AA-TTACTGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4974556 9 - 111193037 AA-TTACTGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3369558 9 + 3644372 AA-TTACTGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322390 9 - 10304083 AA-TTACTGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3406741 9 - 107702431 GA-TTACTGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 927675 9 + 1565135 AA-TTACTGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313007 9 - 13651311 AA-TTACTGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398531 10 - 108792865 AACTTCCTGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3061947 10 - 7082604 ACCTTCCTGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 547609 10 + 5243153 AACTTCCTGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1876806 10 - 1938448 AACTTCCTGC i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2005230 9 + 64289059 AG-TCACCGC i canFam3.chr17 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I e otoGar3.GL873658 2485382 814 + 5252280 I a score=56763.000000 s hg38.chr2_KI270769v1_alt 6192 5 + 120616 TGCT--T s panTro5.chr2A 3443570 5 + 111504155 TGCT--T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330324 5 + 114371477 TGCT--T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 203715 5 + 637652 TGCT--T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003456 5 + 81552678 TGCT--T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261475 5 + 108979918 TGCT--T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4974565 5 - 111193037 TGCT--T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3369567 5 + 3644372 TGCT--T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322399 5 - 10304083 TGCT--T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3406750 5 - 107702431 TGCT--T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 927684 5 + 1565135 TGCT--T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313016 5 - 13651311 TGCT--T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398541 5 - 108792865 TGCT--C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3061957 5 - 7082604 TGCT--T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 547619 5 + 5243153 TGCT--T i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1876816 5 - 1938448 TGCT--T i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2486196 5 + 5252280 tgca--t i otoGar3.GL873658 I 814 C 0 s canFam3.chr17 2005239 7 + 64289059 CGCTACT i canFam3.chr17 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e dasNov3.JH580157 492287 9680 + 2232271 I a score=72246.000000 s hg38.chr2_KI270769v1_alt 6197 6 + 120616 tttatt s panTro5.chr2A 3443575 6 + 111504155 tttatt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330329 6 + 114371477 tttatt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 203720 6 + 637652 tttatt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003461 6 + 81552678 tttatt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261480 6 + 108979918 tttatt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4974570 6 - 111193037 tttatt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3369572 6 + 3644372 tttatt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322404 6 - 10304083 tttatt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3406755 6 - 107702431 tttatt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 927689 6 + 1565135 tttatt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313021 6 - 13651311 tttatt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398546 6 - 108792865 ttcatc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3061962 6 - 7082604 Ctcatt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 547624 6 + 5243153 ttcatt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1876821 6 - 1938448 ttcatt i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2486201 6 + 5252280 ctcacc i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2005246 6 + 64289059 TTTGTT i canFam3.chr17 C 0 I 593 s dasNov3.JH580157 501967 6 + 2232271 tttatt i dasNov3.JH580157 I 9680 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I a score=1554242.000000 s hg38.chr2_KI270769v1_alt 6203 159 + 120616 cattcatcagttggtggacatt---tgggctgtttctaccttttggctgttgtgagtaatgctac-tgtgaacattcacaca--------------------------------------------------caggcgt--ttgtgtctatgtgttctcagtgatctgggatgtatagctaggtgtggacttgctggattctgtggtaactctgt-- s panTro5.chr2A 3443581 159 + 111504155 cattcatcagttggtggacatt---tgggctgtttctaccttttggctgttgtgagtaatgctac-tgtgaacattcacaca--------------------------------------------------caggcgt--ttgtgtctatgtgttctcagtgatctgggatgtatagctaggtgtggacttgctggattctgtggtaactctgt-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330335 159 + 114371477 cattcatcagttggtggacatt---tgggctgtttctaccttttggctgttgtgagtaatgctac-tgtgaacattcacaca--------------------------------------------------caggcgt--ttgtgtctatgtgttctcagtgatctgggatgtatagctaggtgtggacttgctggattctgtggtaactctgt-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 203726 159 + 637652 cattcgtcagttggtggacatt---tgggctgtttctgccttttggctgttgtgagtaatgctac-tgtgaacgttcacaca--------------------------------------------------caggcgt--ttgtgcctatgtgttctcagtgatctgggatgtatagctaggtgcggacttgctgggttctatggtaactctgt-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003467 159 + 81552678 cattcatcagttggtggacatt---tgggctttttctaccttttggctgttgtgagtaatgctac-tgtgaacattcacaca--------------------------------------------------caggcgc--ttgtgtctgtgtgttctcagcaatctgggatgtgtagctaggtgtggactcgctgggttctatggtaactctgt-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261486 158 + 108979918 cgttcatcagttggtggacatt---tgggctgtttctaccttttggctattgtcagtaatgctac-tgtgaacattcacaca--------------------------------------------------catgtgt--ttgtgtctgtgtgttctcagctatctgggatgtatagcttgggatggacttgctgg-ttctacggtaactctgt-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4974576 158 - 111193037 cgttcatcagttggtggacatt---tgggctgtttctaccttttggctattgtcagtaatgctac-tgtgaacattcacaca--------------------------------------------------catgtgt--ttgtgtctgtgtgttctcagctatctgggatgtatagcttgggatgaacttgctgg-ttctacggtaactctgt-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3369578 158 + 3644372 cgttcatcagttggtggacatt---tgggctgtttctaccttttggctattgtcagtaatgctac-tgtgaacattcacaca--------------------------------------------------catgtgt--ttgtgtctgtgtgttctcagctatctgggatgtatagcttgggatggacttgctgg-ttctacggtaactctgt-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322410 158 - 10304083 cgttcatcagttggtggacatt---tgggctgtttctaccttttggctattgtcagtaatgctac-tgtgaacattcacaca--------------------------------------------------catgtgt--ttgtgtctgtgtgttctcagctatctgggatgtatagcttgggatggacttgctgg-ttctacggtaactctgt-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3406761 158 - 107702431 cgttcatcagttggtggacatt---tgggctgtttctaccttttggctattgtcagtaatgctac-tgtgaacattcacaca--------------------------------------------------catgtgt--ttgtgtctgtgtgttctcagctatctgggatgtatagcttgggatggacttactgg-ttctacggtaactctgt-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 927695 208 + 1565135 cattcatcagttggtggacatt---tgggctgtttctaccttttggctattgtcagtaatgctac-tgtgaacattcacacatgtgtttgtgtctggctattgtcagtaatgctactgtgaacattcacacgcatgtgt--ttgtgtctgtgtgttctcagctatctgggatgtatagcttgggatggacttgctgg-ttctacggtaactctgt-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313027 158 - 13651311 cgttcatcagttggtggacatt---tgggctgtttctaccttttggctattgtcagtaacgctac-tgtgaacattcacaca--------------------------------------------------caagtgt--ttgtgtctgtgtgttctcagctgtctgggatgtatagctcaggatggacttgctgg-ttctgtggtaactctgt-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398552 158 - 108792865 cgtccgtcgctt-gcggatttt---tgggctgtttctaccttctggctggtgtgagggatgctac-catgaacactcacaca--------------------------------------------------caggtgt--ccgtgtctgcgtgtcctcggttacctgggctgtgcagctgggtgtggaactgctgggttccatggcaactctgt-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3061968 158 - 7082604 cgtccgtcggtt-gcagatatt---ggggctgtttctaccttttggctaatgtgaggagtgctgc-tgtgaacactcacaca--------------------------------------------------caggtgt--cggtgtctgcgtgtcctcagttacttgggatgtgtagctgggtgtggaactgctgggttccatggcaactccgt-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 547630 158 + 5243153 cgtccgtcggtt-gcggatatt---tgggctgtgtctaccttttggctagtgtgaggaatgctgt-cgtgaacactcacaca--------------------------------------------------caggcgt--gtgtgtctgcgtgtcctcacttacgtgggatgtgtagctaggtgcggacctgctgggttccgtggcagctccgt-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1876827 158 - 1938448 cctccgtcggtt-gtggatatt---tgggctctttctcccttttggctcgtgtgaggaatgctgc-tgtgaacactcacaca--------------------------------------------------caggtgt--ctgtatctgcgtgtcctcagttacctgggatgtgtagctaggtgtggagctgctgggttccatggcaactctgt-- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2486207 154 + 5252280 cgttcgtgctgtggtggacattggctggtcagcgtctcctctctg------ctgagcggtgctgc-tgt-aatgtccgtgtg--------------------------------------------------caggtttccccgtggacgtgtgttctcagctctcc-cgaggtacggct-gctgtggaactgctgg-ctgacaggtggctctgc-- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2005845 160 + 64289059 catttatcccttgatggacatt---tgatttatttctactttttggctgttgtgaatgatgctgcttatgaatattcacgaa--------------------------------------------------caagttt--ttgagtggtcaagtttccacttctcttgggtacatacctcagagtggaactcctgggttacatagcaactctgg-- i canFam3.chr17 I 593 I 213 s dasNov3.JH580157 501973 132 + 2232271 tattcatcagttggtggacatt---tcaattgtttccactttttgcctatt------aaagct-c-tatgaacattcatgta--------------------------------------------------caaattt--ct----------------------tttgggtatatgcataggagtggaattgctgagtcatatgattaatccatgt i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I a score=1017641.000000 s hg38.chr2_KI270769v1_alt 6362 104 + 120616 tcaacattttgaggccccgccagacagttttctaaaatggctattccatgttgactccccaccaatgatgtggtgtgtgagggttccagttgctccacatcctt s panTro5.chr2A 3443740 104 + 111504155 tcaacattttgaggccccgccagacagctttctaaaatggctattccatgttgactccccaccaatgatgtggtgtgtgagggttccagtttctccacatcctt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330494 104 + 114371477 tcaacattttgaggccccgccagacagctttctaaaatggctattccatgttgactccccaccaatgatgtggtgtgtgagggttccagtttctccacatcctt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 203885 104 + 637652 tcaacattttgaggccccgccagacagttttctaaaatggctgttccatgtcgactccccaccaatgatgtggtgtgtgagggttccagtttctccacatcctt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003626 104 + 81552678 tcaacattttgaggccccaccagacagtcttctaaaatggctcttccatgttgactccccaccaatgatgtggtgtgtgagggttccagtttctccgcaccctt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261644 103 + 108979918 tcaacattctgaggccccgccagactg-tttctagaatggctattccatgttgaatccccactgatgatgtgtcgtgtgagggttccagtttctccacatcctt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4974734 103 - 111193037 tcaacattctgaggtcccgccagactg-tttctagaatggctattccatgttgaatccccactgatgatgtgtcgtgtgagggttccagtttctccacatcctt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3369736 103 + 3644372 tcaacattctgaggccccgccagactg-tttctagaatggctattccatgttgaatccccactgatgatgtgtcgtgtgagggttccagtttctccacatcctt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322568 103 - 10304083 tcaacattctgaggccccgccagactg-tttctagaatggctattccatgttgaatccccactgatgatgtggcgcgtgagggttccagtttctccacatcctt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3406919 103 - 107702431 tcaacattctgaggccccgccagactg-tttctagaatggctgttccaagttgaatccccaccgatgatgtgtcgtgtgagggttccagtttctccacatcctt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 927903 103 + 1565135 tcaacattctgaggccccgccagactg-tttctagaatggctattccatgttgaatccccaccgatgatgtggcgcgtgagggttccagtttctccacatcctt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313185 103 - 13651311 tcaacattttgaggccccaccagactg-tttctaaaatggctattccatgttgaatccccaccgatgatgtggcgtgtgagggttcccgtttctccacatcctt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398710 104 - 108792865 ttaacatgctgaggaacccccagcctgttttctaaaacggctattccattttgaattctcaccaacgatgcgatgtgtgagggtgccagtctctccacttcctt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062126 104 - 7082604 ttaacatgctggggaaccaccagactgttttctaaaatggctattccgtttcaaattcccaccaatgatgcgatgcgtgagggtgccagtttctccacttcttt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 547788 104 + 5243153 ttaacatgctgaggaaccaccagactgttttctaaaatggccgttccattttgaattcccaccagtgatgcgatgcgtgagggtgccagtttctccacttcctT i cebCap1.NW_016107454v1 C 0 I 597 s aotNan1.NW_018507213v1 1876985 104 - 1938448 ttaacatgctgaggaaccaccagactgttttctaacatggctattccattttgaattcccaccagtgatgcgacgtgtgagggtgccagtttctccacctcctt i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2486361 81 + 5252280 tcagcgtt-tggggctccaccagacc-----------------ttccggtttacattccctccaaagag-----gtctgagggttccacttcctccaaatgctt i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 502105 99 + 2232271 ttgacatcttgggaaattgccacactgttttccaaagcagctgtattattttacattcccaccagaaat-----gtattagagttccaatttctccacatactT i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2006005 213 + 64289059 I e proCoq1.NW_012151163v1 912981 3193 + 1238772 I a score=37843.000000 s hg38.chr2_KI270769v1_alt 6466 4 + 120616 gagt s panTro5.chr2A 3443844 4 + 111504155 gagt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330598 4 + 114371477 gagt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 203989 4 + 637652 gagt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003730 4 + 81552678 gAGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261747 4 + 108979918 gAGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4974837 4 - 111193037 gagt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3369839 4 + 3644372 gagt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322671 4 - 10304083 cagt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407022 4 - 107702431 gagt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928006 4 + 1565135 cagt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313288 4 - 13651311 gagt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398814 4 - 108792865 gAGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062230 4 - 7082604 gAGT i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1877089 4 - 1938448 gAGT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2486442 3 + 5252280 -gAT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 502204 4 + 2232271 AAGT i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2006005 213 + 64289059 I e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e cebCap1.NW_016107454v1 547892 597 + 5243153 I a score=900714.000000 s hg38.chr2_KI270769v1_alt 6470 128 + 120616 ttggg------ttt-------------------------------------------------------------gg-----gttttaattgttgtgg-tttt------tTTGTTCAGGTGGTCTCATTTTTCCCTGGAGTAAGCAAACACTGGA-TCAGAGGA-TAGACC-CTGCCAGGATAAACAGGCACCTTTCT---GCATTGGCGATG s panTro5.chr2A 3443848 128 + 111504155 ttggg------ttt-------------------------------------------------------------gg-----gttttaattgttgtgg-tttt------tTTGTTCAGGTGGTCTCATTTTTCCCGGGAGTAAGCAAACACTGGA-TCAGAGGA-TAGACC-CTGCCAGGATAAACAGGCACCTTTCT---GCATTGGCGATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330602 128 + 114371477 ttggg------ttt-------------------------------------------------------------gg-----gttttaattgttgtgg-tttt------tTTGTTCAGGTGGTCTCATTTTTCCCGGGAGTAAGCAAACACTGGA-TCAGAGGA-TAGACC-CTGCCAGGATAAACAGGCACCTTTCT---GCATTGGCGATG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 203993 134 + 637652 ttggg------ttt-------------------------------------------------------------gggttttgttttaattgttgtggttttt------TTTGTTCAGGTGGTCTCATTTTTCCCTGGAGTAAGCGAACACTGGA-TCAGAGGA-TAGACC-CTGCCAGGATAAACAGGCACCTTTCT---GCATTGGCGATG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003734 134 + 81552678 TTGGG------TTT-------------------------------------------------------------GGGTTTTGTTATAATTGTTGTGG-TTTT------TTTGTTCAGGTGGTCTCATTTTTCCCTGGAGTAAGCAAACACTGGAGCCAGAGGA-TGGACC-CTGCCGGGATAAACAGGCACCTTTCT---GCATTGGCGATG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261751 128 + 108979918 TTGGG------TTT-------------------------------------------------------------GGATTTTGTTTTAATTGTTGGGG--TTT------TTGGTTCAGGTGGTCTCATTTTTCCCCGGTTTAAGCAAACACTGGAGCCAGAGGA-TAGACC-CTCCGAGGATGAACAGGCACCTTT--------CTGGCGATG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4974841 128 - 111193037 ttggg------ttt-------------------------------------------------------------ggattttgttttaattgttgtgg--ttt------ttggTTCAGGTGGTCTCATTTTTCCCCGGTGTAAGCAAACACCGGAGCCAGAGGA-TAGACC-CTCCGAGGATAAACAGGCACCTTT--------CTGGCGATG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3369843 133 + 3644372 ttggg------ttt-------------------------------------------------------------ggattttgttttaattgttgtgg--ttt------ttggTTCAGGTGGTCTCATTTTTCCCCGGTGTAAGCAAACACTGGAGCCAGAGGA-TAGACC-CTCCGAGGATAAACAGGCACCTTTCT---GCACTGGCAATG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322675 133 - 10304083 ttggg------ttt-------------------------------------------------------------gggttttgttttaattgttgtgg--ttt------ttggTTCAGGTGGTCTCATTTTTCCCCGGAGTAAGCAAACACTGGAGCCAGAGGA-TAGACC-CTCCGAGGATAAACAGGCACCTTTCT---GCACTGGCGATG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407026 133 - 107702431 ttggg------ttt-------------------------------------------------------------gggttttgttttaattgttgtgg--ttt------ttggTTCAGGTGGTCTCATTTTTCCCCGGAGTAAGCAAACACTGGAGCCAGAGGA-TAGACC-CTCCGAGGATAAACAGGCACCTTTCT---GCACTGGCGATG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928010 133 + 1565135 ttggg------ttt-------------------------------------------------------------gggttttgttttaattgttgtgg--ttt------ttggttcaggtggtctcattTTTCCCCGGAGTAAGCAAACACTGGAGCCAGAGGA-TAGACC-CTCCGAGGATAAACAGGCACCTTTCT---GCACTGGCGATG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313292 132 - 13651311 ttggg------ttt-------------------------------------------------------------gggttttgttttaactgttgtgg--tTT------TTGGTTCAGGTGGTCTCATTTTTCCCCGGAGTAAGCAAACACTGGAGCCAGAGGA-TAGACC-CTCCGAGGAT-AACAGGCACCTTTCT---GCACTGGCAACG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398818 115 - 108792865 TCAGG------TTT-------------------------------------------------------------GTGTTTTGGT-TACTTGTCGTAG--CTT------TTTGGCCGGGTAGTTTCGTGTTTCCCTGGAG-----------------CAGAGGG-TAGGGC-CTCCAAGAATGGACAGCCACGTTTCT---GCATTGGCGATG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062234 115 - 7082604 TCAGG------TTT-------------------------------------------------------------GTGTTTCGGT-TACTTGTCGTAG--CTT------TTTGTCCAGGTGGTTTCGTGTTTCCCTGGAG-----------------CAGAGGG-TAGGGC-CTCCAAGAATGGACAGCCGCATTTCT---GCATTGGCGATG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1877093 115 - 1938448 TCAGG------TTT-------------------------------------------------------------GTGTTTTGGT-TACTTGGCGTAG--CTT------TTTGTGCAGGTGGTTTCGTGTTTCCCTGGAG-----------------CAGAGGG-TGGGGC-CTCCGAGAATGGACAGCCGCGTTGCT---GCATTGGCGATG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2486445 131 + 5252280 TTGGG------GGT-------------------------------------------------------------TGGTTTTGTTTCTGTT--TGTCC--TTT------GATGTTCAGGTGTTCTTACTTTGCCTGGGGGACAGCATACACCAGAGCCAGAGGGTTGGGTG-CTCCCCAGGTGAGCTGCCAAGTGTCC---CCA-TGGCGGCT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2006218 165 + 64289059 tgggg------ttcacattttaaggactgtccagactatcttccaaatggcaccattttacattccaccagACGGGGGTTTTGCTTTGTTTTTGTTTA--TTTGATGTGTTTGTTCGGGTGGTTTTGCTTACCCTGGGAGAGAGCAAACAC--------------TGGAGC-TTCTCCGTAGGAGCCG------------------------- i canFam3.chr17 I 213 I 7 s dasNov3.JH580157 502208 143 + 2232271 TTGGGTGGGTTTTT-------------------------------------------------------------TTGTTTTGTTTTTGTTTGTGAAA--TGT------TTTGTTCAGGTGGTTCCATTTCCCCTAGGAAAAAGCAAACACTGGTTCTAAAAGA-CAGAAAGCTCTCAGGATAAGCAGCCACATTTCTAAAGCTTCAGAACTT i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 912981 3193 + 1238772 I e cebCap1.NW_016107454v1 547892 597 + 5243153 I a score=171331.000000 s hg38.chr2_KI270769v1_alt 6598 24 + 120616 TGGCAGAAAGCTCAGCGTGTTCTG s panTro5.chr2A 3443976 24 + 111504155 TGGCAGAAAGCTCAGCGTGTTCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330730 24 + 114371477 TGGCAGAAAGCTCAGCGTGTTCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204127 24 + 637652 TGGCAGAAAGCTCAGCGTGTTCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003868 24 + 81552678 TGGCAGAAAGCTCAGCGTGTGCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261879 24 + 108979918 CGGCGGAAAACTCAGCGACTTCCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4974969 24 - 111193037 TGGCGGAAAACTCAGCGAGTTCCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3369976 24 + 3644372 TGGCGGAAAACTCAGCGAGTTCCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322808 24 - 10304083 TGGCGGAAAGCTCAGCGAGTTCTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407159 24 - 107702431 TGGCGGAAAACTCAGCGAGTTCTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928143 24 + 1565135 TGGCGGAAAGCTCAGCGAGTTCTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313424 24 - 13651311 TGGCGGAAAAGTCAGCGAGTTCTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398933 15 - 108792865 TGGCAGGAAATTCTG--------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062349 15 - 7082604 TGGTAGGAAATTCTG--------- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1877208 15 - 1938448 TGGCAGGAAATTCTG--------- i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 916174 24 + 1238772 TGGCAGGAAGCTCAGCGTGTCGTG i proCoq1.NW_012151163v1 I 3193 C 0 s otoGar3.GL873658 2486576 23 + 5252280 GGGCAGAGGGC-CAGTGTGCTGTG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2006390 24 + 64289059 GAGCAGAAAGCGCCTTGTGTGCTG i canFam3.chr17 I 7 C 0 s dasNov3.JH580157 502351 23 + 2232271 TAGCA-AAAGCCCAGCACATTCTG i dasNov3.JH580157 C 0 C 0 e cebCap1.NW_016107454v1 547892 597 + 5243153 I a score=161590.000000 s hg38.chr2_KI270769v1_alt 6622 13 + 120616 TGCCAGGTGCAGG s panTro5.chr2A 3444000 13 + 111504155 CGCCAGGTGCAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330754 13 + 114371477 CGCCAGGTGCAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204151 13 + 637652 TGCCAGGTGCAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003892 13 + 81552678 TGCCGGGTGCAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261903 13 + 108979918 TGCCAGGTGCAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4974993 13 - 111193037 TGCCAGGTGCAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370000 13 + 3644372 TGCCAGGTGCAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322832 13 - 10304083 TGCCAGGTGCAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407183 13 - 107702431 TGCCAGGTGCAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928167 13 + 1565135 TGCCAGGTGCAGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313448 12 - 13651311 TGCCAGGTGCA-G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398948 13 - 108792865 TGCCGGGTGTGGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062364 13 - 7082604 TGCCGGGTGCAGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 548489 13 + 5243153 TGCCGGGTGCGGG i cebCap1.NW_016107454v1 I 597 C 0 s aotNan1.NW_018507213v1 1877223 13 - 1938448 TGCCGGGCGCGGG i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 916198 13 + 1238772 TGCCAGGTGCAGG i proCoq1.NW_012151163v1 C 0 I 50 s otoGar3.GL873658 2486599 12 + 5252280 TGCCAGGTGAGG- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2006414 13 + 64289059 GGTCAGGCGCAGG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 502374 13 + 2232271 GGTCATTTCCAAG i dasNov3.JH580157 C 0 C 0 a score=527679.000000 s hg38.chr2_KI270769v1_alt 6635 51 + 120616 GGCTGCTGCCT-TTCAGCAGCGCTACCCCGTGAGCATTTGTGTCTTTGGGCT s panTro5.chr2A 3444013 51 + 111504155 GGCTGCTGCCT-TTCAGCAGCGCTACCCCATGAGCATTTGTGTCTTTGGGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330767 51 + 114371477 GGCTGCTGCCT-TTCAGCAGCGCTACCCCATGAGCATTTGTGTCTTTGGGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204164 51 + 637652 GGCTGCTGCCT-TTCAGCAGCGCTACCCCATGAGCGTTTGTGTCTTTGGGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003905 51 + 81552678 GGCTGCTGCCT-TTCAGCAGCACTACCCCATGAGCATTTGTGTCTCTGGGCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261916 51 + 108979918 GCCTGCTGCCT-TTCAGCAACACTACCCCATGAGCATTTGTGTCTTTAGGCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975006 51 - 111193037 GCCTGCTGCCT-TTCAGCAACACTACCCCATGAGCATTTGTGTCTTTAGGCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370013 51 + 3644372 GCCTGCTGCCT-TTCAGCAACACTACCCCATGAGCATTTGTGTCTTTAGGCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322845 51 - 10304083 GCCTGCTGCCT-TTCAGCAACACTACCCCATGAGCATTTGTGTCTTTAGGCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407196 51 - 107702431 GCCAGCTGCCT-TTCAGCAACACTACCCCATGAGCATTTGTGTCTTTAGGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928180 51 + 1565135 GCCTGCTGCCT-TTCAGCAACACTACCCCATGAGCATTTGTGTCTTTAGGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313460 51 - 13651311 GCCTGCTGCCT-TTCAGCAACACTACCCCACGAGCATTTGTGCCTTTAGGCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3398961 50 - 108792865 GGCCGCTGCCT-TGCAG-AATGCTACCCTGTGAGCATTTGTGTCTTTAGGTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062377 50 - 7082604 GGCCGCTGCCT-TGCAG-AACGCTATTCCATGAGCATTTGTGTCTTTAGGTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 548502 50 + 5243153 GGCCGCAGCCT-TGCAG-AACGCTACCCCGTGAGCATTTGTGTCCTTAGGTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1877236 49 - 1938448 GGCCGCTGCCT-CACAG-AAC-CTACCCCGTGAGCATTTGTGTCTTCAGGTT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2486611 49 + 5252280 TGCAGCCGGCT-TTCAG-TGTGCGGCCCC-CGACCGTACGTGCCTTTAGGTG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2006427 51 + 64289059 GGCTGCCGTCTCTTCAGCACCACTGCCCCACAACCAT-TGTGTCTTCCGGTT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 502387 52 + 2232271 TACTGCTGTCTTTTCAGTGCAGTTGCCTAATGGCAACTTGTTTCTTTGGGTT i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 916211 50 + 1238772 I a score=1150271.000000 s hg38.chr2_KI270769v1_alt 6686 91 + 120616 TCCCAGACAGTAAGGCCCATACGCTTTCAGTCCACTGCTCTGGCTTCTGTTTTGTCTTTCACCATCAAAATCAAGAAGGGACTACTGAGAC s panTro5.chr2A 3444064 91 + 111504155 TCCCAGACAGTAAGGCCCATATGCTTTCAGTCCACTGCTCTGGCTTCTGTTTTGTCTTTCACCGTCAAAATCAAGAAGGGACTACTGAGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330818 91 + 114371477 TCCCAGACAGTAAGGCCCATACGCTTTCAGTCCACTGCTCTGGCTTCTGTTTTGTCTTTCACCGTCAAAATCAAGAAGGGACTACTGAGAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204215 91 + 637652 TCCCAGACGGTAAGGCCCATACGCTTTCAGTCCACTGCTCTGGCTTATGTTTTGTCTTTCACCATCAAAATCAAGAAGGGACTACTGAGAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3003956 91 + 81552678 TCCCAGACAGTAAGGCCCATACGCTTTCAGTCCGCTGCTCTGGCTTCTGTTTTGTCTTTCACCATGAAAATCAAGAAGGGACTACTGACAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3261967 91 + 108979918 TCCCAGGCAGTAAGGCCCGTAAGCTTTCAGGCCGCTGCTCTGGCTTCTGTTTTGTCTTTCACCATGAAAATCAAGAAGAGACAACTGAGAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975057 91 - 111193037 TCCCAGGCAGTAAGGCCCGTAAGCTTTCAGGCCGCTGCTCTGGCTTCTGTTTTGTCTTTCACCATGAAAATCAAGAAGAGACAACTGAGAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370064 91 + 3644372 TCCCAGGCAGTAAGGCCCGTAAGCTTTCAGGCCGCTGCTCTGGCTTCTGTTTTGTCTTTCACCATGAAAATCAAGAAGAGACAACTGAGAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322896 91 - 10304083 TCCCAGGCAGTAAGGCCCGTAAGCTTTCAGGCCGCTGCTCTGGCTTCTGTTTTGTCTTTCACCATGAAAATCAAGAAGAGACAACTGAGAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407247 91 - 107702431 TCCCAGGCAGTAAGGCCCGTAAGCTTTCAGTCTGCTGCTCTGGCTTCTGTTTTGTCTTTCACCATGAAAATCAAGAAGAGACAACTGAGAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928231 91 + 1565135 TCCCAGGCAGTAAGGCCCGTAAGCTTTCAGGCCGCTGCTCTGGCTTCTGTTTTGTCTTTCACCATGAAAATCAAGAAGAGACAACTGAGAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313511 91 - 13651311 TCCCAGACAGTAAGGCCCGTAAGCTTTCAGTCCGCTGCTCTGGCTTCTGTTTTGTCTTTCACCATGAAAATCAAGAAGGGACAACTGAGAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399011 74 - 108792865 TCCCAGACA----------------CTCAGTC-ACTGCTCTGGCTCCTGTCTTGTCTTTCACCATCAAAATCAAGAAGGGACTACTGAGAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062427 90 - 7082604 TCCCAGACGGTAAGGCCCAGACACTCTGAGTC-GCTGCTCTGGTTTCTGTCTTGTCTTTCACCATCAAAATCAAGAAGGGACTACTGAGAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 548552 90 + 5243153 TCCCAGACGGTAAGGCCCAGACACTTTCAGTC-GCTGCTCTGGCTTCTGTCTTGTCTTTCACCATCAAAATCAAGAAAGGACTGCTGAGCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1877285 90 - 1938448 TCCCAGACGGTAAGGCCCAGACACTTTCAGTC-ACTGCTCTGGCTTCTGTCTTGTCTTTCACCATCAAAATCAAGAAGGGACTGCTGAGAC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 916261 91 + 1238772 TCCCGGACAGTAAGGCCCGTACGCTTCGAATCAGCTGCTCTGGGGTCTGTTTTGTCTTTGGCCATTAAAACGAAGAAGGGATTACTAAGAC i proCoq1.NW_012151163v1 I 50 I 163 s otoGar3.GL873658 2486660 90 + 5252280 TGCCAAACAGTAAGGTCCGTATGTTCTGACCCAGCTGCTCTGGGTTCTGTTTTGTCTTTGGCCAATAAAATCCAGAAGGGA-CAATAAGGT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2006478 90 + 64289059 TCCCAGACAGTAAAGCTTATATGCTATGAATCAGCTGCTCTGGTTTCCGTTTTGTCTTTGTCCATTAAAATCAAGAAGGGACTGCGGAAC- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 502439 90 + 2232271 TCCTGCACAGTAAGGGACATACA-TTTAAATCAGCCACTTTGAATTCTGTTTTGTCTGTGGCCATTAAAATCAAGAAGGGGTTGCTAGGAC i dasNov3.JH580157 C 0 C 0 a score=1471517.000000 s hg38.chr2_KI270769v1_alt 6777 152 + 120616 TATTCCCCCATTGCAGGAAA--GGCAGCCAGG----CCCTAACCGCCTGTCAGCCGTGAGAA-CAGCCACTTGCTCCTCCATAAATGCACCTGACCAGGAGAATGGGGTGGCG------------ACATCACGA-TGAGT-----CCCAGATTGTGATATATTCATGTGTTTCCTTC s panTro5.chr2A 3444155 152 + 111504155 TATTCCCCCATTGCAGGAAA--GGCAGCCAGG----CCCTAACTGCCTGTCAGCTGTGAGAA-CAGCCACTTGCTCCTCCATAAATGCACCTGACCAGGAGAATGGGGTGGCG------------ACATCACGA-TGAGT-----CCCAGATTGTGATATATTCATGTGTCTCCTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3330909 152 + 114371477 TATTCCCCCATTGCAGGAAA--GGCAGCCAGG----CCCTAACTGCCTGTCAGCTGTGAGAA-CAGCCACTTGCTCCTCCATAAATGCACCTGACCAGGAGAATGGGGTGGCG------------ACATCACGA-TGAGT-----CCCAGATTGTGATATATTCATGTGTCTCCTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204306 152 + 637652 TGTTCCCCCATTGCAGGAAA--GGCAGCCAGG----CTCTAACCGCCTGTCAGCTGTGAGAA-CAGCCACTTGCTCCTCCATAAATGCACCTGACCAGGAGAATGGGGTGGCG------------ACATCACGA-TGAGT-----CCCAGATTGTGATATATTCATGTATCTCCTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004047 153 + 81552678 TATTTCCCCATTGCAGGAAA--GGCAGCTGGGC---CCCTAACCACCTGTCAGCTGTGAGAA-CAGCCACTTGCTCCTCCATAAATCCACCTGACCAGGAGAATGGGGTGGCG------------AGATCACGA-TGAGT-----CCCAGATTGTGATATATTCATATATCTCCTTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262058 153 + 108979918 TATTCCCCCATTGCAGGAAA--GACAGCCAGGC---CCCTAAGCGCCTGTCAGCTGTGAGAA-CAGCCACTTGCTCCTCCAGAAATGCACCTGACCAGGAGAATGGGATGGTG------------AGATCACGA-TGAGT-----CCCAGATTGTGATATGTTCGTATATCTCCTTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975148 153 - 111193037 TATTCCCCCATTGCAGGAAA--GACAGCCAGGC---CCCTAAGCGCCTGTCAGCTGTGAGAA-CAGCCACTTGCTCCTCCAGAAATGCACCTGACCAGGAGAATGGGATGGTG------------AGATCACGA-TGAGT-----CCCAGATTGTGATATGTTCGTATATCTCCTTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370155 153 + 3644372 TATTCCCCCATTGCAGGAAA--GACAGCCAGGC---CCCTAAGCGCCTGTCAGCTGTGAGAA-CAGCCACTTGCTCCTCCATAAATGCACCTGACCAGGAGAATGGGATGGTG------------AGATCACGA-TGAGT-----CCCAGATTGTGATATGTTCGTATATCTCCTTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3322987 153 - 10304083 TATTCCCCCATTGCAGGAAA--GACAGCCAGGC---CCCTAAGCGCCTGTCAGCTGTGAGAA-CAGCCACTTGCTCCTCCATAAATGCACCTGACCAGGAGAATGGGATGGTG------------AGATCACGA-TGAGT-----CCCAGATTGTGATATGTTCGTATATCTCCTTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407338 153 - 107702431 TATTCCCCCATTGCAGGAAA--GGCAGCCAGGC---CCCTAAGCGCCTGTCAGCTGTGAGAA-CAGCCACTTGCTCCTCCATAAATGCACCTGACCAGGAGAATGGGATGGTG------------AGATCACGA-TGAGT-----CCCAGATTGTGATATGTTCATATATCTCCTTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928322 153 + 1565135 TATTCCCCCATTGCAGGAAA--GACAGCCAGGC---CCCTAAGCGCCTGTCAGCTGTGAGAA-CAGCCACTTGCTCCTCCATAAATGCACCTGACCAGGAGAATGGGATGGTG------------AGATCACGA-TGAGT-----CCCAGATTGTGATATGTTCGTATATCTCCTTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313602 153 - 13651311 TATTCCCCCATTGCAGGAAA--GGCAGCCAGGC---CCCTAACCGCCTGTCAGCTGTGAGAA-CAGCCACTTGCTCCTCCAGAAATGCACCTGACCAGGAGAATGGGGTGGTG------------CGATCACAA-TGAGT-----CCCAGATTGTGATACGTTCATATATCTCCTTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399085 162 - 108792865 TATT----CATGGCAGGAAG--GGCAGCCAGGC---CCCCGGCCACCTGCCAGCTGTGAGAACCAGCCACTTGCTCCTCCGTAAGCATACCTGACCCAGAGAATGGGGTGGCGATCTTCATTGCCAGATCACGA-AGAGT-----CCCAGATTGTGATGTGTTCCCATATCTCCTTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062517 162 - 7082604 TACT----CATGGCAGGAAG--GGCAGCCAGGC---CCCCGTCCGCCTGCCAGCTGTGAGAACCAGCCACTTGCTCCTCCGTAAACATACCTGACCCAGAGAATGGGGTGGCGATCTTCATCGCCAGATCACGA-AGAGT-----CCCAGATTGTGATGTGTTCACGTATCTCCTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 548642 162 + 5243153 TATT----CCTGGCAGGACG--GGCAGCCAGGC---CCCCGACCGCCTGCCCGCTGTGAGAACCAGCCGCCTGCTCCTCCGTCAACATACCTGACCCAGAGCATGGGGTGGCGATCTTCATCGCCAGATCACGA-AGAGT-----CCCAGATTGTGATGTGTTCACGTATCTCCTTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1877375 162 - 1938448 TGTT----CATGGCAGGACG--GGCAGCCAGAC---CCCCGACCGCCTGCCAGCTGTGAGAACCAGCCACTTGCTCCTCCGTAAACATACCTGACCCACAGAATGGGGTGGCGATCTTCACCGCCAGATCACGA-AGAGT-----CCCAGATTGTGATGTGTTCCCATATCTCCTTC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2486750 126 + 5252280 --GTCCTGCATTGCAGGAGG--GCTAT---GGA---CCGTGGCCTTCTGCTGGCTGTGAGAACTGGCCACTTCCTCTTCC--AAACTCCCCTGACCAAGAGGATGGGGAACCA---------------------------------TCAGATTGTGGTACGTCTGCATCAC------ i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2006568 148 + 64289059 TGTCCCCACACTGCAGGGGGGTGGCAGC--------CCACAGCCATCTGTGAGC--TGAGAT-CAGCCACTTGCTCTTGCATAAACACGTCTGAC-----GGGTGAGAGGCAG------------ACATCCTCC-CCATTGCCTGCCCGAGTCCTGGCTCATTCCCCTGCCATCTCC i canFam3.chr17 C 0 I 2 s dasNov3.JH580157 502529 167 + 2232271 CATGGCAGCATTGCAGTAGG--AGTAACAGGCCAAATATTTACCCTCTGAGTGCTGTGAGAACCAAACACATGCTTTTTCATAAATGCACCTGACCTGGGGTAAGGAGTGTCATTCTGCATTGCCATATACTGAGTGAGT-----CCCTAGTTTGGTCACATTTATCTTCCCCC--- i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 916352 163 + 1238772 I a score=577236.000000 s hg38.chr2_KI270769v1_alt 6929 52 + 120616 GTGTTCCCTGAACCTTGCCCTGGATAAAGTAGACCCTCACTGAATGGCTTGC s panTro5.chr2A 3444307 52 + 111504155 GTGTTCCCTGAACCTTGCCCTGGATAAAGTAGACCCTCACTGAATGGCTTGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331061 52 + 114371477 GTGTTCCCTGAACCTTGCCCTGGATAAAGTAGACCCTCACTGAATGGCTTGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204458 52 + 637652 GTGTTCCCTGAACCTTGCCCTGGATAAAGTAGACCCTCACTGAATGGCTTGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004200 14 + 81552678 G--------------------------------------CTGAATGGCTTGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262211 52 + 108979918 GTGTTCCCTGGACCTTGCCCTGGATAAAGTAGACCCTCGCTGAACGGTTTGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975301 52 - 111193037 GTGTTCCCTGGACCTTGCCCTGGATAAAGTAGACCCTCGCTGAACGGTTTGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370308 52 + 3644372 GTGTTCCCTGGACCTTGCCCTGGATAAAGTAGACCCTCGCTGAACGGTTTGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3323140 52 - 10304083 GTGTTCCCTGAACCTTGCCCTGGATAAAGTAGACCCTCGCTGAATGGTTTGC i cerAty1.NW_012000820v1 C 0 I 90 s chlSab2.chr14 3407491 52 - 107702431 GTGTTCCCTGAACCTTGCCCTGGATAAAGTAGACCCTCACTGAATGGTTTGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928475 52 + 1565135 GTGTTCCCTGAACCTTGCCCTGGATAAAGTAGACCCTCGCTGAATGGTTCGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313755 52 - 13651311 GTGTTCCCTGAACCTTGCCCTGGATAAAGTAGACCCTCGCTGAATGGTTTGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399247 52 - 108792865 GCGTTCCCTGAACCTTGCCCTGGATAAAGTCAGCCCTCACTGAACAGCTTGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062679 52 - 7082604 GCATTCCCTGAACCTTGCCCTGGATAAAGTCAACCCTCACTGAACAGCTCGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 548804 52 + 5243153 GCGTTCCCTGAACGTTGCCCTGGATAAAGTCAACCCTCACTGAACAGCTCGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1877537 52 - 1938448 GCGTTCCCTGAACCTGGCCCTGGATAAAGTCACCCCTCACTGAACAGCTCGC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 916515 52 + 1238772 GTGTTCCCCGAACCTTGCCTTGGATAGAGAAGACCCTCACTTACTGGTTTGC i proCoq1.NW_012151163v1 I 163 C 0 s otoGar3.GL873658 2486876 52 + 5252280 GTGGTCCCTGAGCCTTGCTTGGGATAAAGTAGACGCCTGCTTAATGCCTTGC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2006718 51 + 64289059 ACATTTCCTG-CTCTGGCTTTGGATGCGCTGGTCCCTCACCTAAGAGTTTGC i canFam3.chr17 I 2 C 0 s dasNov3.JH580157 502696 51 + 2232271 ACATTCCACTGATACTACCTTGTATA-ACTAGCCTCTCAATTAATGTTTTAC i dasNov3.JH580157 C 0 C 0 a score=2009.000000 s hg38.chr2_KI270769v1_alt 6981 2 + 120616 TG s panTro5.chr2A 3444359 2 + 111504155 TG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331113 2 + 114371477 TG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204510 2 + 637652 TG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004214 2 + 81552678 TG i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3399299 1 - 108792865 -T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062731 1 - 7082604 -T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 548856 1 + 5243153 -A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1877589 1 - 1938448 -C i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 916567 2 + 1238772 TG i proCoq1.NW_012151163v1 C 0 I 224 s otoGar3.GL873658 2486928 2 + 5252280 TG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2006769 2 + 64289059 TG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 502747 2 + 2232271 TG i dasNov3.JH580157 C 0 C 0 e colAng1.NW_012118821v1 3313807 0 - 13651311 C e manLeu1.NW_012104432v1 928527 0 + 1565135 C e chlSab2.chr14 3407543 0 - 107702431 C e cerAty1.NW_012000820v1 3323192 90 - 10304083 I e macNem1.NW_012011978v1 3370360 0 + 3644372 C e macFas5.chr13 4975353 0 - 111193037 C e rheMac8.chr13 3262263 0 + 108979918 C a score=42178.000000 s hg38.chr2_KI270769v1_alt 6983 12 + 120616 GTCTGAAGGAAT s panTro5.chr2A 3444361 12 + 111504155 GTCTGAAGGAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331115 12 + 114371477 GTCTGAAGGAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204512 12 + 637652 GTCTGAAGGAAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004216 12 + 81552678 GGCTGAAGGAAT i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3399300 12 - 108792865 GTGTGAAGGAAT i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3062732 12 - 7082604 GTGTGAAGGAAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 548857 12 + 5243153 GTGTGAAGGAAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1877590 12 - 1938448 GTGTCAAGGAAT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2486930 12 + 5252280 GTTTTAAAGAAC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2006771 12 + 64289059 ATTTGAAGGGCC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 502749 12 + 2232271 ATTTGAATCTAT i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 916569 224 + 1238772 I e colAng1.NW_012118821v1 3313807 0 - 13651311 C e manLeu1.NW_012104432v1 928527 0 + 1565135 C e chlSab2.chr14 3407543 0 - 107702431 C e cerAty1.NW_012000820v1 3323192 90 - 10304083 I e macNem1.NW_012011978v1 3370360 0 + 3644372 C e macFas5.chr13 4975353 0 - 111193037 C e rheMac8.chr13 3262263 0 + 108979918 C a score=11099.000000 s hg38.chr2_KI270769v1_alt 6995 1 + 120616 C s panTro5.chr2A 3444373 1 + 111504155 C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331127 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204524 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004228 1 + 81552678 C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262263 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975353 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370360 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3323282 1 - 10304083 C i cerAty1.NW_012000820v1 I 90 C 0 s chlSab2.chr14 3407543 1 - 107702431 C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928527 1 + 1565135 C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313807 1 - 13651311 C i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399313 1 - 108792865 T i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3062744 1 - 7082604 T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 548869 1 + 5243153 C i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1877602 1 - 1938448 C i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2486942 1 + 5252280 C i otoGar3.GL873658 C 0 I 1345 s canFam3.chr17 2006783 1 + 64289059 C i canFam3.chr17 C 0 C 0 e proCoq1.NW_012151163v1 916569 224 + 1238772 I e dasNov3.JH580157 502761 0 + 2232271 C a score=678754.000000 s hg38.chr2_KI270769v1_alt 6996 102 + 120616 ATTGGTTCTAGCTGGATTCCATCCCAGGTGTAG------------------TAGCACAGCTCTCTAGAAAGCCCT---------GGGGG----AAGTTCCCTCCCCC------------TCCCACCTCCCCTGCACAGTAACGGC s panTro5.chr2A 3444374 102 + 111504155 ATTGGTTCTAGCTGGATTGCATCCCAGGTGTAG------------------TAGCACAGCTCTCTAGAAAGCCCT---------GGGGG----AAGTTCCCTCCCCC------------TCCCACCTCCCCTGCACAGTAATGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331128 102 + 114371477 ATTGGTTCTAGCTGGATTGCATCCCAGGTGTAG------------------TAGCACAGCTCTCTAGAAAGCCCT---------GGGGG----AAGTTCCCTCCCCC------------TCCCACCTCCCCTGCACAGTAACGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204525 102 + 637652 ATTGGTTCTAGCTGGATTCCATCCCAGGTGTAG------------------TAGCACAGCTCTCTAGAAAGCCCT---------GGGGG----AAGTTCCCTCCCCC------------TCCCACCTCCCCTGCACAGTAACGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004229 114 + 81552678 ATTGGTTCTAGCTGGATTCCATCCCAGGTGTAG------------------TAGCACAGCTCTCTAGAAAGCCCT---------GGGGG----AAGCTccctccacccccacccccctgccccccccccccAGCACAGTAACTGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262264 90 + 108979918 ATTGGTTCTAGCTGGACTCCAT-CCAGGTGCAG------------------CAGCGCAGCTCTCTAGAAGGCCCT---------GCGGG----AAGCTCCCTCCCCT-----------------------CCGCAGAGTAACCAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975354 90 - 111193037 ATTGGTTCTAGCTGGACTCCAT-CCAGGTGCAG------------------CAGCGCAGCTCTCTAGAAGGCCCT---------GCGGG----AAGCTCCCTCCCCT-----------------------CCACACAGTAACCAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370361 90 + 3644372 ATTGGTTCTAGCTGGACTCCAT-CCAGGTGCAG------------------CAGCACAGCTCTCTAGAAGGCCCT---------GCGGG----AAGCTCCCTCCCCC-----------------------CCGCACAGTAACCAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3323283 90 - 10304083 ATTGGTTCTAGCTGGATTCCAT-CCAGGTGCAG------------------CAGCACAGCTCTCTGCAAGGCCCT---------GCGGG----AAGCTCCGTCCCCT-----------------------CCGCACAGTAACCAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407544 90 - 107702431 ATTGGTTCCAGCTGGATTCCAT-CCAGGTGCAG------------------CAGCACAGCTCTCTAGAAGGCCCT---------GCGGG----AAGCTCCCTCCCCT-----------------------CCGCACAGTAACCAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928528 90 + 1565135 ATTGGTTCTAGCTGGAGTCCAT-CCAGGTGCAG------------------CAGCACAGCTCTCTAGCAGGCCCT---------GCGGG----AAGCTCCCTCCCCT-----------------------CCACACAGTAACCAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313808 90 - 13651311 ATTGGTTCTAGCTGGATTCCAT-CCAGGGGCAG------------------CAGCACAGCTGTCTGGAAAGCCCT---------GCGGG----AAGCTCCCTCCCGT-----------------------CCCCACGGTAACCAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399314 85 - 108792865 GTTGGTTCCATCTGGGTTCCGTCCCCGGGGCAG------------------CAGCACAGCTCT---GGAAACCCT---------GGGGA----AGCCCCTCGCCTCC--------------------------CCCAGTGACCGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062745 85 - 7082604 GTTGGTTCTAGCTAAGTTCCATCCCCAGGGCAG------------------TAGCACAGCTCT---GGAAACCCC---------GAGGA----AGCCCCTCACCTCC--------------------------CCCAGTGACAGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 548870 85 + 5243153 ATTGGTTCTAGCTGGGTTCCGTCCCTAGGGTAG------------------CAGCACAGCTCT---GGAAACCCC---------AGGGA----AGCCCCTCACCTCC--------------------------CACAGTGACCGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1877603 84 - 1938448 GTTGGCTCTAGCTGGGTTCC-TCCCCAGGGCAG------------------CAGCACAGCTCT---GGAAACCCT---------GGGGA----AGCCCCTCACCTCC--------------------------CACAGTGACCGC i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2006784 100 + 64289059 AAGGGTTCCAGGCGGGTGCCATCCCAGGTGCAG------------------CAGCATACCTCTCAGAAAAATGCTGTCATGGGGGGGGG----ATGTTTGATCTCCT-----------------------CTCTCCAGTGGCCAT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 502761 111 + 2232271 -TGGGTTTTAGGGGGATCCCATCCCAGGTGCAGCTCCCCGGAAACCATCAACAACATACCTATCTAACAATCCAT---------GAGGGAAAAAAGCCTGCTCCCCT-----------------------CAGCCAAGTTAACA- i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 916569 224 + 1238772 I e otoGar3.GL873658 2486943 1345 + 5252280 I a score=1154479.000000 s hg38.chr2_KI270769v1_alt 7098 138 + 120616 TAGAGG-AGATGCAGTACAAGCGTCTCCACCTCCCTGCGCTGTC-ACCACCTTCAGTT-AGCCACACAGCAAGGGCGAGGTTTGTCCTAAGACGCTTGTCACATCCTTG-GCCCTCTGTTGGTGGGATATTTGATAGTCATG s panTro5.chr2A 3444476 138 + 111504155 TAGAGG-AGACGCAGTAGAAGCGTCTCCACCTCCCTGCGCTGTC-ACCGCCTTCAGTT-AGCCACACAGCAAGGGTGAGGTTTGTCTTAAGACACTTGTCACATCCTTG-GCCCTCTGTTGGTGGGATATTTGATAGTCATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331230 138 + 114371477 TAGAGG-AGACGCAGTAGAAGCGTCTCCACCTCCCTGCGCTGTC-ACCGCCTTCAGTT-AGCCACACAGCAAGGGTGAGGTTTGTCTTAAGACACTTGTCACATCCTTG-GCCCTCTGTTGGTGGGATATTTGATAGTCATG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204627 138 + 637652 TAGAGG-AGATGCAGTCCAAGCGTCTCTACCTCCCTGCGCTGTC-ACCGCCTTCAGTT-AGCCACACAGCAAGGGCGAGGTTTGTCTTAAGACGCTTGTCACATCCTTG-GCCCTCTGTTGGTGGGATATTTGATAGTCATG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004343 138 + 81552678 TGGAGG-AGATGCAGTACAAGCGTCTCCACCTCCCTGCACTGTC-ACTGCCTTCAGTT-AGCGACACAGCAAGGGCGAGGTTTGTCTTAAGATGCTTGTCACATCCTTG-GCCCTCTATTGGTGGGATATTTGATAGTCATG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262354 125 + 108979918 TGGAGG-AGATGCAGTGCCAGCGTCTCCACCTCCCTGTGCC--------------GTT-AGCCACACAGCAAGGGCGAGGTTTGTCTTAAGACGCTTGTCACATCCTTG-GCCCTCCGTTGATGGGATATTTGATAGTCATG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975444 125 - 111193037 TGGAGG-AGATGCAGTGCCAGCGTCTCCACCTCCCTGTGCC--------------GTT-AGCCACACAGCAAGGGCGAGGTTTGTCTTAAGACGCTTGTCACATCCTTG-GCCCTCCGTTGATGGGATATTTGATAGTCATG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370451 125 + 3644372 TGGAGG-AGATGCAGTGCCAGCGTCTCCACCTCCCTGTGCC--------------GTT-AGCCACACAGCAAGGGCGAGGTTTGTCTTAAGACGCTTGTCACATCTTTG-GCCCTCCGTTGATGGGATATTTGATAGTCATG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3323373 125 - 10304083 TGGAGG-AGATGCAGTGCCAGCGTCTCCACCTCCCTGCGCC--------------GTT-AGCCACACAGCAAGGGCGAGGTTTGTCTTAAGACGCTTGTCACATCCTTG-GCCCTCCGTTGATGGGATATTTGATAGTCGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407634 125 - 107702431 TGGAGG-AGATGCAGTGCCAGCGTCTCCACCTCCCTGTGCC--------------GTT-AGCCACACAGCAAGGGCGAGGTTTGTCTTAAGACGCTTGTGACATCCTTG-GCCCTCCGTTGATGAGATATTTGATAGTCATG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928618 124 + 1565135 T-GAGG-AGATGCAGTGCCAGCGTCTCCACCTCCCTGCGCC--------------GTT-AGCCACACAGCAAGGGCGAGGTTTGTCTTAAGACGCTTGTCACATCCTTG-GCCCTCCGTTGATGGGATATTTGATAGCCATG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3313898 125 - 13651311 TGGAGG-ACATGCAGTACCAGCGTCTCCACCTCCCTCTGCC--------------GTT-AGCGACACAGCAAGGGCGAGGTTTGTCTTAAGATGCTTGTCACATCCTTG-GCCCTCCGTTGATGGGAGATTTGATAGTCATG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399399 137 - 108792865 TGGAGG-AGAGGCCGGGCAGGAGCCTCCATCTCCCTGTACCACC-GCCGCCTTCCGCG-AGCCACACAGCAA-GGCGAGGTTTGTGGTGAGACGCTTGTCACATCCTTG-GCCCTGTCCCTGTGGGATGGTTGATAGTCATG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062830 120 - 7082604 T------------------GGAGCCTCCATCTCCCTA-GCCCTC-GCCGCCTTCCACT-AGCCACACAGCAAGGGCGAGGTTTGTGGTAAGACGCTTGTCACAGCCTTG-GCCCTGTCTCGGTGGGATGGTTGATAGTCATG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 548955 120 + 5243153 TGAAGG-AGAGGCCAGGCAGGAGCCTCCATCTCCCTG-------------------CT-AGCCACACAGCAAGGGTGAGGTTTGTGGTAAGACGCATGTCACATCCTTG-GCCCCGTGTCAGTAGGATGGTTGATAGTCATG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1877687 138 - 1938448 TGGAGG-AGAGGCCGGGCAGGAGCCTCCGTCTCCCTGCGTCGTC-GCCGCCTTCCGCT-AGCCACACAGCAAGGGCGAGGTTTGTGGTAAGACGCTTGTCACATCCTTG-GCCCTGTCTCAGTGGGATGGTTGACAGTCATG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2488288 127 + 5252280 TGAAGG-ACGTGCAGTCCAAACATCTCAGTCTTACTGTGCCATG-ACCACCTTCAGTTCAGGGGCACAGCAAGGGCTGGGTGGGTCTTA------CTGTCACAGCCTTG-GACTTCCAAAGGGGGGGTG-TTGTTAG----- i otoGar3.GL873658 I 1345 C 0 s mm10.chr12 91389400 137 - 120129022 TGAAGA-AGGTAAAGTAG-AACCCCGTCATCTTTCT-TGCCATC-TTCACCTTCAGTTTAGAAACACAGCAGACACAAGATGTGTCATAGGATGTGGGTGATTGCTTTG-GGCTGTCTTAAATGAGACATTGATTAGTCAAC i mm10.chr12 N 0 C 0 s canFam3.chr17 2006884 111 + 64289059 CAGAGG-ATGGGCAG-GTAGGTGCCATGGCC--CCTGTGCCGTA-ATCACCTCCAGCTTAGTGACACATT-------------------------TTATCACATCCCTG-GGCTTTCATAGGTGAGATGTTTCTTAGTCATG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 502872 140 + 2232271 -AGAGACAGATATAA-ATAAAAGATGTGATTCCACAGTGCCATTGATTGCCTTCAGTTCAGTCACATAGCAGTAGTTAAGTTTGTCATATGATGTTTGTCATATCTTTTCAGCTTTCATAAATGGGATATTTGTTAGTCATA i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 916569 224 + 1238772 I a score=519768.000000 s hg38.chr2_KI270769v1_alt 7236 38 + 120616 CATATGCTAGTATCTCA-GGAACTT-GCTGTGGTAGCTAA s panTro5.chr2A 3444614 38 + 111504155 CATATGCTAGTATCTCA-GGAACTT-GCTGTGGTAGCTAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331368 38 + 114371477 CATATGCTAGTATCTCA-GGAACTT-GCTGTGGTAGCTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204765 39 + 637652 CATACGCTAGTATCTCA-GGAACTTGGCTGTGGTAGCTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004481 38 + 81552678 CATAGGCTAGTATCTCA-GGAACTT-GCTGTGGTAACTAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262479 38 + 108979918 CATATGCTAATATCTCA-GGAACTT-GCTGTGGTAACTAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975569 38 - 111193037 CATATGCTAATATCTCA-GGAACTT-GCTGTGGTAACTAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370576 38 + 3644372 CATATGCTAATATCTCA-GGAACTT-GCTGTGGTAACTAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3323498 38 - 10304083 CATATGCTAATATCTCA-GGAACTT-GCTGTGGTAACTAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407759 38 - 107702431 CATATGCTAATATCTCA-GGAACTT-GCTGTGGTAACTAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928742 38 + 1565135 CATATGCTAATATCTCA-GGAACTT-CCTATGGTAACTAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314023 37 - 13651311 CATATGCTAATATCTCC-GGAACTT-GCTGTGGTAA-TAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399536 38 - 108792865 CGTATGCTAATGTCTCG-GGAACTT-CCTGCGGTAACTGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062950 38 - 7082604 CGTGTGCTAGTGTCTCA-GGAACTT-CCTGCCGTAACTGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 549075 38 + 5243153 CGTATGCTAATGTCTCA-GGAACTT-CCTGCGGTAACTGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1877825 38 - 1938448 CGTATGCTAATGTCTCA-GGAACTT-CCTGCGGTAACTGA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2605583 38 - 159902609 CATATGCTAATATCTCA-GGAACTG-CCTGTGGTAACTAA i micMur3.chr8 N 0 C 0 s proCoq1.NW_012151163v1 916793 38 + 1238772 CATATGCTAATATCTCA-GGAACTT-CCTGTGGTAGCTAA i proCoq1.NW_012151163v1 I 224 C 0 s otoGar3.GL873658 2488415 26 + 5252280 AATGTGCTGACATCTC--------------TGGTAACCAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91389537 38 - 120129022 CATACCTCTCTACCCAA-AGAGTGT-GCTGTCATAACTAA i mm10.chr12 C 0 I 301 s canFam3.chr17 2006995 37 + 64289059 CACACGCTCATGTATCA-GGAACTT--CCATGCTAACGAA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 503012 39 + 2232271 TATATGCTTATAGCTCAGGGAATTT-CCTGAGGTAACTAA i dasNov3.JH580157 C 0 C 0 a score=141885.000000 s hg38.chr2_KI270769v1_alt 7274 13 + 120616 AATATTAAC-TAAC s panTro5.chr2A 3444652 13 + 111504155 AATATTAAC-TAAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331406 13 + 114371477 AATATTAAC-TAAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204804 13 + 637652 AATATTAAC-TAAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004519 13 + 81552678 AATATTAAC-TAAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262517 13 + 108979918 AATATTAAC-TAAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975607 13 - 111193037 AATATTAAC-TAAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370614 13 + 3644372 AATATTAAC-TAAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3323536 13 - 10304083 AATATTAAC-TAAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407797 13 - 107702431 AATATTAAC-TAAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928780 13 + 1565135 AATATTAAC-TAAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314060 13 - 13651311 AATATTAAC-TAAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399574 13 - 108792865 AACGTTAAC-TAAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3062988 13 - 7082604 AATGTTAAC-TAAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 549113 13 + 5243153 AATGTTAAC-TAAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1877863 13 - 1938448 AATGTTAAC-TAAC i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2605621 9 - 159902609 AGTGTTAAC----- i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 916831 9 + 1238772 AGTGTTAAC----- i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2488441 14 + 5252280 AGTGTTAATTCTAA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2007032 13 + 64289059 ATTGTTAAC-CAAC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 503051 5 + 2232271 ----TTCAT----- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91389575 301 - 120129022 I a score=551161.000000 s hg38.chr2_KI270769v1_alt 7287 42 + 120616 AGAGAA-TTTTAAGGACAAGAG---ATTTTCACAGCATGGTCTCAT s panTro5.chr2A 3444665 42 + 111504155 AGAGAA-TTTTAAGGACGAGAG---ATTTTCACAGCATGGTCTCAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331419 42 + 114371477 AGAGAA-TTTTAAGGACGAGAG---ATTTTCACAGCATGGTCTCAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204817 40 + 637652 --AGAA-TTTTAAGGACGAGGG---ATTTTCGCAGCATGGTCTCAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004532 42 + 81552678 AGAGAA-TTTTAAGGACGAGAG---ATTTTTGCAGCGTGGTCTCAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262530 40 + 108979918 AGAGAA-TTCTAAAGGCGAGA-----TTTTTGCAGCATGGTCTCAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975620 40 - 111193037 AGAGAA-TTCTAAAGGCGAGA-----TTTTTGCAGCATGGTCTCAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370627 40 + 3644372 AGAGAA-TTTTAAAGGCGAGA-----TTTTTGCAGCATGGTCTCAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3323549 40 - 10304083 AGAGAA-TTTTAAGGGCGAGA-----TTTTTGCAGCATGGTCTCAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407810 40 - 107702431 AGAGAA-TTTTAAGGGCGAGA-----TTTTTGCAGCATGGTCTCAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928793 40 + 1565135 AGAGAA-TTTTAAGGGCAAGA-----TTTTTGCAGCATGGTCTCAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314073 42 - 13651311 AGAGAA-TTTTAAGGGCGAGAG---CTTTTTGCAGCATGGTCTCAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399587 40 - 108792865 --AGAA-TTTTCAGGACGAGAG---ATTTTTGCAGCGTGGTCTCAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063001 40 - 7082604 --AGAA-TTTTCAGGAGGAGAG---ATTTTTGCGGCGTGGTCTCAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 549126 42 + 5243153 AGAGAA-TTTTCAGGACGAGGG---ATTTTTGCAGCGTGGTCTCAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1877876 40 - 1938448 --AGAA-TTTTCAGGACGAGAG---ATTTTTGCAGCGTGGTCTCAT i aotNan1.NW_018507213v1 C 0 I 16 s micMur3.chr8 2605630 42 - 159902609 AGAGAA-TTCTAAGGACTAGAG---ATTTTTGCAGTGTGGTCTCAT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 916840 40 + 1238772 --AGAA-TTTTAAGGACAAGAG---ATTTCTGCAGTGCGGTCTCGT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2488455 42 + 5252280 AGAGAA-TTTTAAGGAGGAGAG---AGCCTTGCAGTGCGGCCTCAT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91389876 42 - 120129022 AAAGAA-CTTTAAGGATAAAAT---ATAGTTATGGTGTGATCTCAT i mm10.chr12 I 301 C 0 s canFam3.chr17 2007045 42 + 64289059 AGAGAA-TTTTAAGGGCAAAAG---ATTTTTGCAGAGTCGTCTAAT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 503056 46 + 2232271 AGGGAATTTTTAAGAGCAAAAGAACATTTTTGCATTGTGGCCTAAT i dasNov3.JH580157 C 0 C 0 a score=15010.000000 s hg38.chr2_KI270769v1_alt 7329 1 + 120616 T s panTro5.chr2A 3444707 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331461 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204857 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004574 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262570 1 + 108979918 T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975660 1 - 111193037 T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370667 1 + 3644372 T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3323589 1 - 10304083 T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407850 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928833 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314115 1 - 13651311 T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399627 1 - 108792865 T i calJac3.chr14 C 0 I 4 s saiBol1.JH378218 3063041 1 - 7082604 T i saiBol1.JH378218 C 0 I 4 s cebCap1.NW_016107454v1 549168 1 + 5243153 T i cebCap1.NW_016107454v1 C 0 I 18 s micMur3.chr8 2605672 1 - 159902609 T i micMur3.chr8 C 0 I 74 s proCoq1.NW_012151163v1 916880 1 + 1238772 T i proCoq1.NW_012151163v1 C 0 I 4 s otoGar3.GL873658 2488497 1 + 5252280 T i otoGar3.GL873658 C 0 I 4 s mm10.chr12 91389918 1 - 120129022 T i mm10.chr12 C 0 I 4 s canFam3.chr17 2007087 1 + 64289059 T i canFam3.chr17 C 0 I 2 s dasNov3.JH580157 503102 1 + 2232271 T i dasNov3.JH580157 C 0 C 0 e aotNan1.NW_018507213v1 1877916 16 - 1938448 I a score=96467.000000 s hg38.chr2_KI270769v1_alt 7330 12 + 120616 ----GATAATGTTGTG s panTro5.chr2A 3444708 12 + 111504155 ----GATAATGTTGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331462 12 + 114371477 ----GATAATGTTGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204858 12 + 637652 ----GATAATGTTGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004575 12 + 81552678 ----GATAATGTTGTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262571 12 + 108979918 ----GAGAATGTTGCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975661 12 - 111193037 ----GAGAATGTTGCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370668 12 + 3644372 ----GAGAATGTTGCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3323590 12 - 10304083 ----GAGAATGTGGCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407851 12 - 107702431 ----GAGAATGTTGCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928834 12 + 1565135 ----GAGAATGTTGCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314116 12 - 13651311 ----GAGAGTGTTGTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399632 11 - 108792865 ----GAGCGTGTTGC- i calJac3.chr14 I 4 C 0 s saiBol1.JH378218 3063046 11 - 7082604 ----CAGCCTGTGGC- i saiBol1.JH378218 I 4 C 0 s proCoq1.NW_012151163v1 916885 12 + 1238772 ----GAGAATGTTGCA i proCoq1.NW_012151163v1 I 4 C 0 s otoGar3.GL873658 2488502 12 + 5252280 ----GAGAATGTTTCA i otoGar3.GL873658 I 4 C 0 s mm10.chr12 91389923 12 - 120129022 ----GAGACTGTCACT i mm10.chr12 I 4 I 1 s canFam3.chr17 2007090 12 + 64289059 ----CAGAATGTTGCA i canFam3.chr17 I 2 C 0 s dasNov3.JH580157 503103 16 + 2232271 AATTGAGAATGTCACA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2605673 74 - 159902609 I e cebCap1.NW_016107454v1 549169 18 + 5243153 I e aotNan1.NW_018507213v1 1877916 16 - 1938448 I a score=39847.000000 s hg38.chr2_KI270769v1_alt 7342 3 + 120616 GGG s panTro5.chr2A 3444720 3 + 111504155 GGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331474 3 + 114371477 GGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204870 3 + 637652 GGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004587 3 + 81552678 GGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262583 3 + 108979918 GGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975673 3 - 111193037 GGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370680 3 + 3644372 GGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3323602 3 - 10304083 GGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407863 3 - 107702431 GGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928846 3 + 1565135 GGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314128 3 - 13651311 GGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399643 3 - 108792865 GGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063057 3 - 7082604 GGG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1877932 3 - 1938448 GGG i aotNan1.NW_018507213v1 I 16 C 0 s proCoq1.NW_012151163v1 916897 3 + 1238772 GGG i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2488514 3 + 5252280 AGG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91389936 2 - 120129022 GG- i mm10.chr12 I 1 C 0 s canFam3.chr17 2007102 3 + 64289059 AGG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 503119 3 + 2232271 GGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2605673 74 - 159902609 I e cebCap1.NW_016107454v1 549169 18 + 5243153 I a score=362916.000000 s hg38.chr2_KI270769v1_alt 7345 42 + 120616 ATGGAGGAG--TTG-AATTGGCCCTCCGTC-CCTGGCATTACAATT s panTro5.chr2A 3444723 42 + 111504155 ATGGAGGAG--TTG-AATTGGCCCTCCGTC-CCTGGCATTACAATT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331477 42 + 114371477 ATGGAGGAG--TTG-AATTGGCCCTCCGTC-CCTGGCATTACAATT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204873 42 + 637652 ATGGAGGAG--TTG-AATTGGCCCTCCATC-CCTGGCATTGCAATT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004590 42 + 81552678 ATGGAGGAG--TTG-AATTGGCCCTCCGTC-CCTGGCATTGCAATT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262586 43 + 108979918 ATGGAGGAG--TTGTCCCTGCCCCTCCGTC-CCTGGCATTGCGATT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975676 43 - 111193037 ATGGAGGAG--TTGTCCCTGCCCCTCCGTC-CCTGGCATTGCGATT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370683 43 + 3644372 ATGGAGGAG--TTGTCCCTGCCCCTCCGTC-CCTGGCATTGCGATT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3323605 43 - 10304083 ATGGAGGAG--TTGTCCCTGCCCCTCCGTC-CCTGGCATTGCGATT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407866 43 - 107702431 ATGGAGGAG--TTGTCCCTGGCCCTCCGTC-CCTGGCATTGCGATT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928849 43 + 1565135 ATGGAGGAG--TTGTCCCTGCCCCTCCGTC-CCTGGCATTGCGATT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314131 42 - 13651311 ATGGAGGAG--TTG-CACTGGCCCTCCGTC-CCTGGCATTGCGATT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399646 36 - 108792865 ATGGGGGCG--TTG-GATTGGCCCGCCCTT-CCTG------CGATT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063060 36 - 7082604 ATGGAGGGG--TTG-AATTGACCTGCCCCT-CCTG------CGATT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 549187 37 + 5243153 ATGGAGGGG--TTG-AATTGGCCCGCCCCTCCCTG------CAATT i cebCap1.NW_016107454v1 I 18 C 0 s aotNan1.NW_018507213v1 1877935 35 - 1938448 ATGGAGG-G--TTG-AATGGGCCTGCCCTC-CCTG------CGATT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 916900 42 + 1238772 ATGGAGGAT--TTA-AATTGGCCTTCCCTC-CCCGGCATTCAGATC i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2488517 42 + 5252280 ATGGAGGGT--TTA-AATTGGTCTTCCCTC-CCTGGGATTAAGATT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91389938 18 - 120129022 ATGCAGGAGATTCA-GATT--------------------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2007105 42 + 64289059 ATGGAGAAG--TTA-AATTGGTCCTCCCTC-TGCTGCATCGAGATG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 503122 42 + 2232271 ATGGAGGAA--TTA-AGTCGGTCTTCCCTC-ATCAGCATTAAGATT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2605673 74 - 159902609 I a score=3426053.000000 s hg38.chr2_KI270769v1_alt 7387 221 + 120616 TGATTTTGCTCTTTACCCAGCTCGCTGCCCCCCTGGCT---GAG---ATGCTCTTTGTCTGAGACGAGTTGCATTTTTGCAGAGCTTTATGGGGCCCTGTGTCTGAACTCTTTT-AT-TTTGCCTTTTAATTATTGCTGCTAGATCAGTTAGCTGATTTTGTGGATCTGGTATTTGAAGTACTTC-ACCTT-ATGCTCTGAAAGCAGAA--ATTATACAACTGCTGCCCCTAG s panTro5.chr2A 3444765 221 + 111504155 TGATTTTGCTCTTTACCCAGCTCGCTGCCCCTCTGGCT---GAG---ATGCTCTTTGTCTGAGACGAGTTGCATTTTTGCAGAGCTTTATGGGGCCCTGTGTCTGAACTCTTTT-AT-TTTGCCTTTTAATTATTGCTGCTAGATCAGTTAGCTGATTTTGTGGATCTGATATTTGAAGTACTTC-ACCTT-ATGCTCTGAAAGCAGAA--ATTATACAACTGCTGCCCCTAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331519 221 + 114371477 TGATTTTGCTCTTTACCCAGCTCGCTGCCCCTCTGGCT---GAG---ATGCTCTTTGTCTGAGACGAGTTGCATTTTTGCAGAGCTTTATGGGGCCCTGTGTCTGAACTCTTTT-AT-TTTGCCTTTTAATTATTGCTGCTAGATCAGTTAGCTGATTTTGTGGATCTGGTATTTGAAGTACTTC-ACCTT-ATGCTCTGAAAGCAGAA--ATTATACAACTGCTGCCCCTAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 204915 221 + 637652 TGATTTTGCTCTTTACGCAGCTTGCTGCCCCTCTGGCT---GAG---ATGCTCTTTGTCTGAGATGAGTTGCATTTTTGCAGAGCTTTATGGAGCCCTGTGTCTAAACTCTTTT-AT-TTTGCCCTTTAATTATTGCTGCTAGATCAGTTAGCTGATTTTGTGGATCTGGTATTTGAAGTACTTC-ACATT-ATGCTCTGAAAGCAGAA--ATTATACAACTGCTGCCCCTAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004632 221 + 81552678 TGATTTTGATCTTTACCCAGCTCGCTGCCCCTGTGGCT---CAG---ATGCTCTTTGTCTGAGATGAGTTGCATTTTTGCAGAGCTTTATGGAGCCCTGTGTCTGAACTCTGTT-AT-TTTGCCCTTTAATTATTGCTGCTAGATCAGTTAGCTGATTTTGTGGATCTGGTATTTGAAGTACTTC-ACCTT-ATGCTCTGCAAGCAGAA--ATTATACAACTGCTGCCTGTAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262629 220 + 108979918 TGATTTTGCTCTTCATCCAGCTCGCTG-CCCTCTGGCT---GAG---ATGCTCTTTGTCTGAGAAGAGTTGCGTTTTTGCAGAGCTTTCTGGAGCGCTGGGTCTGAACTCTTTT-AT-TTTGCCCTGTAATTATTGCTGCTAGATCAGTTAGCTGATTTTGTGGATCTGGTATATGAAGTACTTC-ACCTT-ACACTCTGAAAGCAGAA--ATTATACAACGGCTGCCCCTAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975719 220 - 111193037 TGATTTTGCTCTTCACCCAGCTCGCTG-CCCTCTGGCT---GAG---ATGCTCTTTGTCTGAGAAGAGTTGCGTTTTTGCAGAGCTTTCTGGAGCGCTGGGTCTGAACTCTTTT-AT-TTTGCCCTGTAATTATTGCTGCTAGATCAGTTAGCTGATTTTGTGGATCTGGTATATGAAGTACTTC-ACCTT-ACACTCTGAAAGCAGAA--ATTATACAACGGCTGCCCCTAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370726 220 + 3644372 TGATTTTGCTCTTCACCCAGCTCGCTG-CCCTCTGGCT---GAG---ATGCTCTTTGTCTGAGAAGAGTTGCGTTTTTGCAGAGCTTTCTGGAGCGCTGGGTCTGAACTCTTTT-AT-TTTGCCCTGTAATTATTGCTGCTAGATCAGTTAGCTGATTTTGTGGATCTGGTATATGAAGTACTTC-ACCTT-ACACTCTGAAAGCAGAA--ATTATACAACGGCTGCCCCTAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3323648 220 - 10304083 TGATTTTGCTCTTCACCCAGCTCGCTG-CCCTCTGGCT---GAG---ATGCTCTTTGTCTGAGAAGAGTTGCGTTTTTGCAGAGCTTTCTGGAGCGCTGGGTCTGAACTCTTTT-AT-TTTGCCCTGTAATTATTGCTGCTAGATCAGTTAGCTGATTTTGTGGATCTGGTATTTGAAGTACTTC-ACTTT-ACACTCTGAAAGCAGAA--ATTATACAACGGCTGCCCCTAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3407909 220 - 107702431 TGATTTTGCTCTTCACCCAGCTCGCCG-CCCTCTGGCT---GAG---ATGCTCTTTGTCTGAGAAGAGTTGCGTTTTTGCAGAGCTTTATGGAGCGCTGGGTCTGAACTCTTTT-AT-TTTGCCCTGTAATTATTGCTGCTAGATCAGTTAGCTGATTTTGTGGATCTGGTATTTGAAGTACTTC-ACCTT-ACACTCTGAAAGCAGAA--ATTATACAACGGCTGCCCCTAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 928892 220 + 1565135 GGATTTTGCTCTTCACCCAGCTCGCTG-CCCTCTGGCT---GAG---ATGCTCTTTGTCTGAGAAGAGTTGCGTTTTTGCAGAGCTTTCTGGAGCGCTGGGTCTGAACTCTTTT-AT-TTTGCCCTGTAATTATTGCTGCTAGATCAGTTAGCTGATTTTGTGGATCTGGTATTTGAAGTACTTC-ACTTT-ACACTCTGAAAGCAGAA--ATTATACAACGGCTGCCCCTAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314173 220 - 13651311 TGATTTTGCTCTTCACCCAGCTCGCTG-CCCTCTGACT---GAG---ATGCTCTTTGTCTGAGAAGAGTTGCATTTTTGCAGAGCTTTATGGAGCGCTGGGTCTGAACTCTTTC-AT-TTTGCCCTGTAATTATTGCTGCTAGATCAGTTAGCTGACTTTGTGGATCTGGTATTTGAAGTACTTC-ACCTT-ACACTCTGAAAGCAGCA--ATTATACAATGGCTGCCCGTAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399682 207 - 108792865 TGATTTTGCTCTTTACCCAGCTCGCTGCCCCTCTGGCT---GAGATAATGCTCTTTGTCTGAGATGAGCTGCGTTTTTGCCGAGCTCTGTAGAGCCCTATGTCTGCACCTT-------------------TTATTACTGCTGGATCAGTTAGCTGATTTTGTGGCTCTCATATTTGAAGTACTTC-ACCTT-ACGCTCTGAAAGCAGAA--ATTATAAAACTGCTGCCCCTAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063096 223 - 7082604 TGATTTTGCTCTTTACCCAGCTCGCTGCCCCTCTGGCT---GAGATAATGCCCTTTGTCTGAGATGAGTTGCATTTTTGCAGAGCTCTATAGAGCCCTTTGTCTGCACTCTTTC-AT-TTTGCCCTTTAATTATTGCTGCTAGATCAGTTAGCTGATTTTGTGGATCTGATATTTGAAGTACTTC-ACCTT-ACACTCTGAAAGCAGAA--ATTAT-AAACTGCTGCCCCTAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 549224 223 + 5243153 TGATTTTGCTCTTTACCCAGCT-GCTGCCCCTCTGGCT---GAGACAATGCTCTTTGTCTGAGATGAGTCGCATTTTTGCAGAGCTCTGTAGAGCCCTATGTCTGCACTCTTTT-AT-TTTGCCCTTTAATTACTGCTGCTAGATCAGTTAGCTGATTTTGTGGATCTGATATTTGAAGTACTTC-ACCTT-ACACTCTGAAAGCAGAA--ATTATAAAACTGCTGCCCCTAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1877970 224 - 1938448 TGAGTTTGCTCTTTACCCAGCTCGCTGCGCCTCTGGCT---GAGATAATGCTCTTTGTCTGAGATGACTTGCATTTCTGCAGAGCTCTGAAGAGCCCTATGTCTGCACTCTTTT-AT-TTTGCCCTTTAATTATTGCTGCTAGATCAGTTCGCTGATTTTGTGGATCTGATATTTGAAGTACTTC-ACCTT-ACACTCTGAAAGCAGAA--ATTATAAAACTGCTGCCCCTAG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2605747 225 - 159902609 TGATCTTGCTCTTTGCCCGGCTCCCTGTTCCTCTGGCT---AAGATAATGCTCTTTGTCTGATGTGAGTTGCATTTTTGCAAAGCTTTATGGAGCCATATGTCTAAGCTCTTTT-AT-TTTGCCCTTTAATTATCGCCCCTAGATCAGTTAGCTGCTTTTGTGGCTCTGGTATTTGAAGTACTTC-ACCTTAACTCTCTGAAGGCAGAA--ATTATAAAACTGCTGCTCCTAG i micMur3.chr8 I 74 I 166 s proCoq1.NW_012151163v1 916942 225 + 1238772 CAGTTTTGCTCTTTGCCCAGCTCCCTGTTCCTCTGGCT---AAGATAATGCTCTTTGTCTGATAGGAGTTGCATTTTTGCAAAGCTTTATGGAGCCATATGTCTAAGCTCTTTT-AT-TTTGCCCTTTAATTATCGCTCCTAGATCAGTTAGCTGCTTTTGTGGCTCTGGTATTTGAAGTACTTC-ACCTTAACTCTCTGGAGGCAGAA--ATTATAAAACTGCTGCTCCTAG i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2488559 226 + 5252280 TGATTTTGCTCCTCGCCCAGCTCGCTGTTCCTCTGGCT---GAGATAATGGTCTTTGTGTGATACAAGTTGCATTTTTGCAAAGCTTTATGGAGCCGTGTGTCTAAGCTCTTTTCAT-TTTGCCCTTTAATTATCGCTCCTAGATCAGTTAGCTGCTTTTGTGGCTCTGCTGTTTGAGACACTTC-ACCTTAACTCTCTGAAGGCAGAA--ATTGTAAGAGCGCTGCTGGTAG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91389956 223 - 120129022 TGCGTTTGCTTTTTGCTCAGCTTTCTGCCTCCACAACTCTAGAA---ATTCTCTGCATTTGGCACAAGCAGGACTTTTGTAG---TTCATTGGATCCCACATTTTCACCCATTT-TTATTTGCTTTGTAAACATTGCTTCTAGAGCACTCAGCTGCTCCCGTGGCTGTGATAATTGGAGTATTTTAACCTT-ATTCTCCAAAAGCAGAA--ATTACAAATTTGCTGCTACTAA i mm10.chr12 C 0 C 0 s canFam3.chr17 2007147 223 + 64289059 TGATTTTGCCCTTT-CCCTGTTCGCAGCTCCTCCCACT---CAGATAAAGCCCTTTGTCTGGTAGGAGTTGCATTCCTGCAAAGCTTTATGGAGCCATATGGCTGAGCTCTTTTTAT-TCTGCCCTTTAATTGTCCCCCCTAGACCAGTTAGCC-CTTCTGTGGCTCCAGCATTTGAAGCACTTC-ACCTC-A--CTCTGAAAGCAAAAACATCATAAAGCTGCTGTTTCTCA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 503164 225 + 2232271 TGATTTTGCTCTTTGCCTAGTTCATTGCTCCTCTGGCT---CAGATAATGCTCTTTGTCTAATACAAGTTGCATTCTTGCAAAGCTTTATGGAGCCATATGTCTGAGTTCTTTTTAT-TTTGCCCTTTAATTATCCCTCCTAGTTCAGATAGCTACTTCTGTGGCTCTGGCATTTGAAGTATTTC-ACCTT-ACTCTCTAAAAGTGAAA--ATTTTAAAATTGCTGCTTGTAG i dasNov3.JH580157 C 0 C 0 a score=1530663.000000 s hg38.chr2_KI270769v1_alt 7608 160 + 120616 GTCTTTTCCTCAATGTGAG-AAAACGTG-AGG-CTGGCCT-CTGCGAGCACCAGGTTTAGCACCCA-GGGAA---GAGACAGACCTATGACCTGGAGCCA------CCCAG-----CCCC--TTCTGCCGCAGGCTGTTGATCTC----TCC----TGGTAGA-AGGGAGGCAGCAGAGCA-G-AGAAGCAA---- s panTro5.chr2A 3444986 160 + 111504155 GTCTTTTCCTCAATGTGAG-AAAACATG-AGG-CTGGCCT-CTGCGAGCACCAGGTTTAGCACCCA-GGGAA---GAGACAGACCTATGACCCGGAGCCA------CCCAG-----CCCC--TTCTGCCGCAGGCTGTTGATCTC----TCC----CGGTAGA-AGGGAGGCAGCAGAGCA-G-AGAAGCAA---- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331740 160 + 114371477 GTCTTTTCCTCAATGTGAG-AAAACATG-AGG-CTGGCCT-CTGCGAGCACCAGGTTTAGCACCCA-GGGAA---GAGACAGACCTATGACCCGGAGCCA------CCCAG-----CCCC--TTCTGCCGCAGGCTGTTGATCTC----TCC----CGGTAGA-AGGGAGGCAGCAGAGCA-G-AGAAGCAA---- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205136 160 + 637652 GTCTTTTCCTCAATGTGAG-AAAACGTG-AGG-CTGGCCT-CTGCGAGCACCGGGTTTAGCACCCA-GGGAA---GAGACAGACCTATGACCCAGAGCCA------CCCAG-----CCCC--TTCTGCCGCAGGCTGTTGATCTC----TCC----CGGTAGA-AGGGAGGCAGCAGAGCA-G-AGAAGCAA---- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3004853 160 + 81552678 GTCTTTGCCTCAATGTGAG-AAAACGTG-AGG-TCGGCCT-CTGCGAGCACCAGGTTTAGCACCCA-GGGAA---GAGACAGACCTATGACCTGCAGCCA------CCCAG-----CCCC--TCCTGCCGCAGGCTGTTGATCTC----TCC----CGGTGGA-AGGGAGGCAGCAGAGTG-G-AGAAGCAG---- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3262849 157 + 108979918 GTCTTTGCCTCAATGTGAG-AAAACGTG-AGG-TCGGCCT-C---GAGCACCAGGTTTAGCA-CCA-GGGAA---AAGACAGGTCTATGACGCGGAGCCG------CCCGG-----CCTC--TCCTGCCGCAGACTGTTGATCTC----TCC----CGGGAGAGAGGGAGGCAGCAGAGGG-G-AGAAGCAA---- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4975939 157 - 111193037 GTCTTTGCCTCAATGTGAG-AAAACGTG-AGG-TCGGCCT-C---GAGCACCAGGTTTAGCA-CCA-GGGAA---AAGACAGGTCTATGACGCGGAGCCG------CCCGG-----CCTC--TCCTGCCGCAGACTGTTGATCTC----TCC----CGGGAGAGAGGGAGGCAGCAGAGGG-G-AGAAGCAA---- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3370946 157 + 3644372 GTCTTTGCCTCAATGTGAG-AAAACGTG-AGG-TCGGCCT-C---GAGCACCAGGTTTAGCA-CCA-GGGAA---AAGACAGGTCTATGACGCGGAGCCA------CCCGG-----CCTC--TCCTGCCGCAGACTGTTGATCTC----TCC----CGGGAGAGAGGGAGGCAACAGAGGG-G-AGAAGCAA---- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3323868 157 - 10304083 GTCTTTGCCTCAATGTGAG-AAAACGTG-AGG-TCGGCCT-C---GAGCACCAGGTTTAGCA-CCA-GGGAA---AAGACAGGTCTGTGACGCGGAGCCG------CCCGG-----CCCC--TCCTGCCGCAGGCTGTTGATCTC----TCC----CGGGAGAGAGGGAGGCAGCAGAGGG-G-AGAAGCAA---- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408129 160 - 107702431 GTCTTTGCCTCAATGTGAG-AAAACGTG-AGG-TCGGCCT-CTGTGAGCACCAGGTTTAGCA-CCA-GGGAA---AAGACAGGCCCATGACGCGGAGCCT------CCCGG-----CCCC--TCCTGCCGCAGGCTGTTGATCTC----TCC----CGGGAGAGAGGGAGGCAGCAGAGGG-G-AGAAGCAA---- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929112 157 + 1565135 GTCTTTGCCTCAATGTGAG-AAAACGTG-AGG-TCGGCCT-C---AAGCACCAGGTTTAGCA-CCA-GGGAA---AAGACAGGTCTGTGACGTGGAGCCG------CCCGG-----CCCC--TCCTGCCACAGGCTGTTGATCTC----TCC----CGGGAGAGAGGGAGGCAGCAGAGGG-G-AGAAGCAA---- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314393 160 - 13651311 GTCTTTGCCTCAATGTGAG-AAAACGTG-AGG-TCGGCCT-CTGCGAGCACCAGGGTTAGCACCCA-GGGAA---GAGACAGACCTGTGACCCGGAG-CA------CCCGG-----CCCC--TCGTGCCGCGGGCCGTTGATCTC----TCC----CGGTAGAGAGGGAGGCAGCAGCGTG-G-AGAAGCAA---- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3399889 158 - 108792865 CTCTTTGCCTCAGTGTAAG-AAAATGTG-ATG----GCCT-CTGTGAGCACCAGGCTTAGCACGCA-GGGGA---GAGACAGACCTGTGACCCGGGGCCC------CCCAG-----TCCC--TCCTGCCACAGGCTGTTGATCTC----TCC----CAGTAGA-AAGCACGCAGCAGAGCG-GGAGAAGCAG---- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063319 161 - 7082604 GTCTTTGCCTCAATGTAAG-AAAATGTG-ATG-TCCGCCT-CTGCAAGCACCAGGCTTAGCACCCA-GGGGA---GAGACAGACCTGTGACCCGGAGCCA------CCCAG-----TCCC--TCCCGCCACAGGCTGTTGATCTC----TCC----CGGTAGA-AAGCACGCAGCAGAGCA-GGAGAAGCAA---- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 549447 161 + 5243153 GTCTTTGCCTCAGTGTAAG-AAAATGTG-ATG-TCGGCCT-TTGCGAGCACCAGGCTTAGCACCCA-GGGGA---GAGACAGACCTACGACCCGGAGCCA------CCCAG-----TCCC--TCCTGCTACAGGCTGTTGATCTC----TCC----CAGTAGA-AAGCACGCAGCAGAGTG-GGAGAAGCCA---- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1878194 161 - 1938448 GTCTTTGCCTCAGTGTAAG-AAAATGTG-ATG-TCGGCCT-CTGCGAGCCCCAGGCTTAGCACCCA-GGGGA---GAGACAGACCTATGACCCGGAGCCG------CCCAG-----TCGC--TCCTGCCACAGGCTGTTGACCTC----CCC----CAGTAGA-AAGCATACTGCAGAGCG-GCACAAGCAA---- i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 917167 165 + 1238772 ACCTTTG-CCCCATGTGAG-AAGACGCG-AGG-CCTGGCCGCTGCAAGCAGAAGGCTTAGAC-CCA-GGGA----CAGGCAGGCCCGTGACCTGGCGCCACCAGGCTCCCG-----CCCCACCCCCGCCACAGGCTGTCGTTCTC----TCC------ACAGA-AGGGTGTTGGCAGAGCGAG-AGAAGCAG---- i proCoq1.NW_012151163v1 C 0 I 4 s otoGar3.GL873658 2488785 153 + 5252280 GCCTCTG--CCTGTGTGAG-GCGATGCA-AGG-CCCCACT-CTGGAAGCAGAAGGCTCAGCG-CCC-GGGG----GAGACAGA-CTGTGACCTGGAGCCATGAG--CTCCG-----CCCTG-CCCTGCAACAGGCTGTCA---GC----TCC------ACAGA-A-GGTGTCAGCAGAGC--A-CACAGCAG---- i otoGar3.GL873658 C 0 I 4 s mm10.chr12 91390179 141 - 120129022 ATATTTGCCCCAGTATAGT-AGCATAC------TTGGCCT-CTTTAAGCACCAGGCTCAACCACCA-CAGAGCCTGAAACAG--------CACAGAG---------CCCAGATGGCCTCC--TGCTGAGGTAGGCAGCCTACCTC----TCT----AGGTGGCTAAAGAACAGACAG------------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2007370 140 + 64289059 GTTTTCGCTGCCCTGTAAGTGAGAGGTG-TGGCTCAACCT-C--------------TTAGCC---------A---GAACCAGACTGGTGACCTGGAACCC------CCC-------CCCC--CCCCGCCA-AGGCCACTGCTCCC----CCTTTATCAGTGGA-AGGGAAGCCGCAGCCCC-C-CACAGTA----- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 503389 167 + 2232271 ATCTTTTTCTCAGTATAAG----ATGTGTAGC-TTGGCCT-CTTTAAGCA-CAGGCTTTGCACCCAGGGGAA---GAAATAGATGTGTGACCTAGAGCCA------CCCGA-----AACT--CTCTGCTATAGGCTGTCAGTTTCTTTTTCT----CAGTAGA-AGGGTGTCAGCATAAAG-GGAGAGGCAGACAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2605972 166 - 159902609 I a score=159599.000000 s hg38.chr2_KI270769v1_alt 7768 9 + 120616 TGTCAGCAG s panTro5.chr2A 3445146 9 + 111504155 TGTCAGCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331900 9 + 114371477 TGTCAGCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205296 9 + 637652 TGTCAGCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005013 9 + 81552678 TGTCAGCAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263006 9 + 108979918 TGTCAGCAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976096 9 - 111193037 TGTCAGCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371103 9 + 3644372 TGTCAGCAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324025 9 - 10304083 TGTCAGCAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408289 9 - 107702431 TGTCAGCAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929269 9 + 1565135 TGTCAGCAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314553 9 - 13651311 CGTCAGCAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400047 9 - 108792865 TGTCAGCAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063480 9 - 7082604 CGTCAGCAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 549608 9 + 5243153 TGTCAGCAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1878355 9 - 1938448 CGTCAGCAG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2606138 9 - 159902609 TGTCAGCAG i micMur3.chr8 I 166 C 0 s proCoq1.NW_012151163v1 917336 9 + 1238772 TGTCAGCAG i proCoq1.NW_012151163v1 I 4 C 0 s otoGar3.GL873658 2488942 9 + 5252280 TGTCAGCAG i otoGar3.GL873658 I 4 C 0 s mm10.chr12 91390320 9 - 120129022 TGTCCACAG i mm10.chr12 C 0 I 798 s dasNov3.JH580157 503556 9 + 2232271 TTTCAGCTG i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2007510 0 + 64289059 C a score=1423258.000000 s hg38.chr2_KI270769v1_alt 7777 105 + 120616 CTTTTCTGATTCTCTTGCTCTCATGGTCTAGATTCTG---TTCTTCTTTTAAGTGTCACTATTTTGAAAGATAGCAAAAGATTGAAATAACCTTGCTTCTTAGGAGAA s panTro5.chr2A 3445155 105 + 111504155 CTTTTCTGATTCTCTTGCTCTCATGGTCTAGATTCTG---TTCTTCTTTTAAGTGTCACTATTTTGAAAGATAGCAAAAGATTGACATAACCTTGCTTCTTAGGAGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3331909 105 + 114371477 CTTTTCTGATTCTCTTGCTCTCATGGTCTAGATTCTG---TTCTTCTTTTAAGTGTCACTATTTTGAAAGATAGCAAAAGATTGACATAACCTTGCTTCTTAGGAGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205305 105 + 637652 CTTTTCTGATTCTCTTGCTCTCATGGTCTAGATTCTG---TTCTTCTTTTAAGTGTCACTATTTTGAAAGATAGCAAAAGATTGAAATAACCTTGCTTCTTAGGAGAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005022 105 + 81552678 CTTTTCTGATTCCCTTGCTCTCATGGTCTAGATTCTG---TTCTTCTTTTCAGTGTCACTATTTTGAAAGATAGCAAAAGATTGAAATAACCTTGCTTCTTAGGAGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263015 105 + 108979918 CTTTTCTCATTCTCTTGCTCTCATGCTCTAGATATTG---TTCTTCTTTTAAGTGTCACCATTTTTAAAGACAGCGAAAGATTGAAATAACCTTGCTTCTTAGGAGAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976105 105 - 111193037 CTTTTCTGATTCTCTTGCTCTCATGCTCTAGATATTG---TTCTTCTTTTAAGTGTCACCATTTTGAAAGATAGCGAAAGATTGAAATAACCTTGCTTCTTAGGAGAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371112 105 + 3644372 CTTTTCTGATTCTCTTGCTCTCATGCTCTAGATATTG---TTCTTCTTTTAAGTGTCACCATTTTGAAAGATAGCGAAAGATTGAAATAACCTTGCTTCTTAGGAGAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324034 105 - 10304083 CTTTTCTGATTCTCTTGCTCTCATGCTCTAGATATTG---TTCTTCTTTTAAGTGTCACCATTTTGAAAGATAGCGAAAGATTGAAATAACCTTGCTTCTTAGGAGAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408298 104 - 107702431 CTTTTCTGATTCTCTTGCTCTCATGCTCTAGATATTG---TTCTTCTTTAAGTG-TCACCATTTTGAAAGATAGCGAAAGATTGAAATAACCTTGCTTCTTAGGAGAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929278 95 + 1565135 CTTTTCTGATTCTCTTGCTCTCATGCTCTAGATATTG---TTCTTCTTTTAAGA----------AGAAAGATAGCGAACGATTGAAATAACCTTGCTTCTTAGGAGAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314562 105 - 13651311 CTTTTCTGATTCTCTTGCTCTCGTGGTCTAGGTATTG---TTCTTCTTTTAAGCGTCACCATTTTGAGAGATAGCGAAAGATTGAAATAACCTTGCTTCTTAGGAGAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400056 105 - 108792865 CTTTTCGGTGGCTCTTGCTGTCATGCTCTAGGTATTG---TTCTTCTTTGAAGTGTCATCGTTTTAAAAGATCACAAAAGATTGAAATAACCTTGCTTCTTAGGAGAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063489 105 - 7082604 CTTTTCTGTGGCTCTTGCTCTCATGGTCTAGATATTG---TTCTTCTTTTAAGTGTCACCATTTTAAAAGATAGCAAAAGATTGAAATAACCTTGCTTCTTAGGAAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 549617 105 + 5243153 CTTTTCTGTGGCTCTTGCTCTCATGGTCTGGATATTG---TTCCTCTTTTAAGTGTCACCATTTTAAAAGATAGCAAAAGATTGAAATAACCTTGCTTCTTAGGAGAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1878364 105 - 1938448 CTCTTCTGTGGCTCTTGCTCTCATGGTCTAGATATTG---TTCTTCTTTTAAGTGTCACCATTTTAAAAGATAGCAAAAGATTGAAATAGCCTTGCTTCTTAGGAGAA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2606147 105 - 159902609 CTTTTCTGCATCTCCTGCTCACGTGGTCCAGTTACTG---CTTTTCTTTTAAGTGTCACCATTTTGAAAGATAGCAAAAGATCGGAATAACCTTGCTTATTAGCAGAA i micMur3.chr8 C 0 I 966 s proCoq1.NW_012151163v1 917345 100 + 1238772 CTTCTCTGCGTCTCTTGCTCACATGGTCTAGTCACTG--------CTTTTAAGTGTCACCATTTTGAAAGATAGCAAAAGATTGAAATAACCTTGCTTATTAGCAGAA i proCoq1.NW_012151163v1 C 0 I 1473 s otoGar3.GL873658 2488951 98 + 5252280 CTTTCCTGCATCCCTCGCTCACACGGGCTAGCTATTG--------CTTTTAAGTGCCACCATTTTGAAAGATAACAAAAGATTGAAATAGCC-TGCTTATTAGTGAA- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2007510 89 + 64289059 CTTTTCAGCCTCTCCTGCATGCACCGTCCACCTGGTG---GTGCT-TTTTAAGTGTCCCCACTCTGGACGATAACAAAAGAT-----TAGCTTTGCCT---------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 503565 106 + 2232271 CTCTTCTGCATCTCTTGCTAACATGGTTTATATATTGCTTTTTTTTTTTTTAATGTCACCATTTTGGAATATAGCAAACGATTGA-ATAACCTTGCTTATAAGTGGA- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91390329 798 - 120129022 I a score=145478.000000 s hg38.chr2_KI270769v1_alt 7882 13 + 120616 ACAACTTCTATGC s panTro5.chr2A 3445260 13 + 111504155 ACAACTTCTATGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332014 13 + 114371477 ACTACTTCTATGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205410 13 + 637652 ACAACTTCTATGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005127 13 + 81552678 ACAACTTCTATGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263120 13 + 108979918 ACAACTTCTATGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976210 13 - 111193037 ACAACTTCTATGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371217 13 + 3644372 ACAACTTCTATGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324139 13 - 10304083 ACAACTTCTATGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408402 13 - 107702431 ACAACTTCTATGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929373 13 + 1565135 ACAACTTCTATGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314667 13 - 13651311 ACAACTTCTATGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400161 13 - 108792865 ACTACTTCTGTGG i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3063594 13 - 7082604 ACTATTTCTCTGC i saiBol1.JH378218 C 0 I 1 s cebCap1.NW_016107454v1 549722 13 + 5243153 ACTACTTCTGTGC i cebCap1.NW_016107454v1 C 0 I 25 s aotNan1.NW_018507213v1 1878469 13 - 1938448 ACTACTTCTGTGC i aotNan1.NW_018507213v1 C 0 I 1 s otoGar3.GL873658 2489049 13 + 5252280 ACTGCTTCTGTGC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2007599 10 + 64289059 ---ATGTGTATGC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 503671 13 + 2232271 ACTATTTCTGTGC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I a score=57257.000000 s hg38.chr2_KI270769v1_alt 7895 5 + 120616 TTTTC s panTro5.chr2A 3445273 5 + 111504155 TTTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332027 5 + 114371477 TTTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205423 5 + 637652 TTTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005140 5 + 81552678 TTTTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263133 5 + 108979918 TTTTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976223 5 - 111193037 TTTTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371230 5 + 3644372 TTTTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324152 5 - 10304083 TTTTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408415 5 - 107702431 TTTTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929386 5 + 1565135 TTTTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314680 5 - 13651311 TTTTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400175 5 - 108792865 TTTTC i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3063608 5 - 7082604 TTTTC i saiBol1.JH378218 I 1 C 0 s aotNan1.NW_018507213v1 1878483 5 - 1938448 TTTTC i aotNan1.NW_018507213v1 I 1 C 0 s otoGar3.GL873658 2489062 5 + 5252280 GTTTC i otoGar3.GL873658 C 0 I 1469 s canFam3.chr17 2007609 1 + 64289059 ----C i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 503684 5 + 2232271 TTTTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e cebCap1.NW_016107454v1 549735 25 + 5243153 I a score=57394.000000 s hg38.chr2_KI270769v1_alt 7900 51 + 120616 TTTCCCCCGCTCCCCCC-------------GCCACCGCCCCGCCGCCA-----AAAAAAAAAGGGTAGG s panTro5.chr2A 3445278 49 + 111504155 TTTCCCCCGCTCCCCCC--------------CCACCGCCCCGCCGCC------AAAAAAAAAGGGTAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332032 50 + 114371477 TTTACCCCGCTCCCCCC-------------CCCACCGCCCCGCCGCC------AAAAAAAAAGGGTAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205428 63 + 637652 TTTcccccgctccccgccccccgccccccgccccccgccccGCTGCC------AAAAAAAAAGGATAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005145 35 + 81552678 TTTCCCCCGCTCCCCCG----------------------------CC------CCAAAAAAAGGGTAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263138 26 + 108979918 TTTTCCCC-------------------------------------CC------ACAAAAAGAGGGTAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976228 26 - 111193037 TTTTCCCC-------------------------------------CC------ACAAAAAGAGGGTAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371235 26 + 3644372 TTTTCCCC-------------------------------------CC------GCAAAAAGAGGGTAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324157 26 - 10304083 TTTTCCCC-------------------------------------CC------GCAAAAAGAGGGTAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408420 26 - 107702431 TTTTCCCC-------------------------------------CC------ACAAAAAGAGGGTAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929391 26 + 1565135 TTTTCCCC-------------------------------------CC------GCAAAAAGAGGGTAGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314685 26 - 13651311 TTTTCCCC-------------------------------------CC------ACAAAAAGAGGGTCGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400180 14 - 108792865 TCC-------------------------------------------------------AAAAGCGTAGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063613 22 - 7082604 TTCCCCCC-------------------------------------AG----------AAAAAGGGTGGG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1878488 22 - 1938448 TTCCCCCC-------------------------------------CG----------AGAAAGGGTAGG i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2007610 9 + 64289059 ------------------------------------------------------------AAGGGTAGG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 503689 22 + 2232271 -----------------------------------------------TCTTTAATCCAACAAGAATAAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 549735 25 + 5243153 I a score=846294.000000 s hg38.chr2_KI270769v1_alt 7951 93 + 120616 AGAACAATAGGAAGAGATCTGAGCCAGCGGTGAAGTCCAGGCAGGGGGCACGCAGGC---------TTCTCTGCACCCTCAGTCACTGCGTGC--TCCCAGTGG s panTro5.chr2A 3445327 93 + 111504155 AGAACAATAGGAAGAGATCTGAGCCAGCGGTGAAGTCCAGGCAGGGGGCACGCAGGC---------TTCTCTGCACCCTCAGTCACTGCGTGC--TCCCGGTGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332082 93 + 114371477 AGAACAATAGGAAGAGATCTGAGCCAGCGGTGAAGTCCAGGCAGGGGGCACGCAGGC---------TTCTCTGCACCCTCAGTCACTGCGTGC--TCCCGGTGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205491 92 + 637652 AGAACAATAGGAAGAGATCTGAGCCAGCGGTGAAGTCCAGGCA-GGGGCACGCAGGC---------CTCTCTGCACCCTCAGTCACTGTGTGC--TCCCGGTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005180 93 + 81552678 AGAACAATAGGAAGAGATCTGAGCCAGCGGTGAAGTCCAGGCAGGGGGCACGCAGGC---------TTCTCTGCACCCTCAGTCACTGTGTGC--TCCCAGTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263164 93 + 108979918 AGAACAATAGGAAGAGATCTGAGCCAGTGGTGAAGTCCAGGCGGGGGGCACGCAGGC---------GTCTGTGCACCCTCAGTCACTGTGTGC--CCCCGGTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976254 93 - 111193037 AGAACAATAGGAAGAGATCTGAGCCAGTGGTGAAGTCCAGGCGGGGGGCACGCAGGC---------GTCTGTGCACCCTCAGTCACTGTGTGC--CCCCGGTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371261 93 + 3644372 AGAACAATAGGAAGAGATCTGAGCCAGTGGTGAAGTCCAGGCGGGGGGCACGCAGGC---------GTCTGTGCACCCTCAGTCACTGTGTGC--TCCCGGTGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324183 93 - 10304083 AGAACAATAGGAAGAGATCTGAGCCAGTGGTGAAGTCCAGGCGGGGGGCACGCAGGC---------GTCTGTGCACCCTCAGCCACTGTGTGC--TCCCGGTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408446 91 - 107702431 AGAACAATAGGAAGAGATCTGAGCCAGTGGTGAAGTCCAGGCGTGGGGCACGCAGGC---------GTCTGTGCACCCTCAGTCA--CTGTGC--TCCCGGTGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929417 93 + 1565135 AGAACAATAGGAAGAGATCTGAGCCAGTGGTGAAGTCCAGGCGGGGGGCACGCAGGC---------GTCTGTGCACCCTCAGTCACTCTGTGC--TCCCGGTGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314711 93 - 13651311 AGAACAATAGGAAGAGATCTGAGCCAGTGGTGAAGTCCAGGCAGGGGACACGCAGGC---------GTCTGTGCGCCCTCAGTCACTGTGTGC--TCCCGGTGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400194 91 - 108792865 AGAACAATAGAAAGAGAGCCGAGCTGGTGTTGAAGTCCAGGCGGGGGGC-TGCAGGC---------TCCTCTGCATCCTCGGTCACTGTGTGC---CCCGGTGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063635 89 - 7082604 AGAACAATAGGAAGAGCGCTGAGCTGGTGGTGAAGTCCAGGC-GGGGGC-TGCAGGC---------TTCTCTGCATGCT--GTCACTGTGTGC--TCCCGGGGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 549760 91 + 5243153 AGAACAATAGGAAGAGAGCTGAGCTGGTGTTGAAGACCAGGC-AGGGGC-TGCAGGC---------TTCTCTGCATGCTCAGTCACTGTGTGC--TCCCGGTGG i cebCap1.NW_016107454v1 I 25 I 12 s aotNan1.NW_018507213v1 1878510 66 - 1938448 AGAACAGTAGGAAGAGAGCTGAGCTGGTGGTGAAGTCCAGGC-GGA-----------------------------------GTCACTGTGTGC--GCCCAGTGG i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2007619 98 + 64289059 -AAACAATAGGAAGGGACCTGGGGT-GTTGTGAAAT--GTGCAGGGAACACACCCACACTTATTTTCTGTCTGTCCTCTCTGGCTGTGTATGT--GTTCAGTGG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 503711 94 + 2232271 AAAACAATAGGAAAGGAACTGGGACAATTGTGATGTCTGTGCTGGACACATTTAGAA---------ATTGATTTTCTCTCGGGCACCATTTGCTCTCCTGCTG- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I a score=301866.000000 s hg38.chr2_KI270769v1_alt 8044 36 + 120616 CCCGCCTGCAGCATGAGCATCAGCTTCTCTGTGGCT s panTro5.chr2A 3445420 36 + 111504155 CCCGCCTGCAGCATGAGCATCAGCTTCTCTGTGGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332175 36 + 114371477 CCCGCCTGCAGCATGAGCATCAGCTTCTCTGTGGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205583 36 + 637652 CCCGCCTGCAGCATGAGCATCAGCTTCTCTGTGGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005273 36 + 81552678 CCCGCCTGTAGCATGAGCATCAGCTTCTCTGTGGCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263257 36 + 108979918 CCTGCCTGCAGCATGAGCATCAGCTTCCCTGCGGCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976347 36 - 111193037 CCTGCCTGCAGCATGAGCATCAGCTTCCCTGCGGCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371354 36 + 3644372 CCTGCCTGCAGCATGAGCATCAGCTTCCCTGCGGCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324276 36 - 10304083 CCTGCCTGCAGCATGAGCATCAGCTTCCCTGCGGCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408537 36 - 107702431 CCTGCCTGCAGCATGAGCATCAGCTTCCCTGCGGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929510 36 + 1565135 CCTGCCTGCAGCATGAGCATCAGCTTCCCTGCGGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314804 36 - 13651311 CCCGCCTGCAGCATGAGCATCAGCTTCCCTGCGGCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400285 35 - 108792865 -TCGTCTGCAGCCTGAGCATCAGCTTCCCTGTGCCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063724 12 - 7082604 -TCGCCT---------------------TTGTGC-- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1878576 35 - 1938448 -TCGCCTGCAGCGTGAGCATCAGCTTCCCTGTGCCT i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2007717 34 + 64289059 --CTCCTGCAGGATTAGCACTCACTGGCCTGCAGCT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 503805 36 + 2232271 TCCACCCGCAATACTCACATTAGCTTTCCTGTGGTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 549851 12 + 5243153 I a score=464625.000000 s hg38.chr2_KI270769v1_alt 8080 40 + 120616 GGGAGGCAG--CTTTGTGCT----GAGATGGAGAGATCTTGGCTTT s panTro5.chr2A 3445456 40 + 111504155 GGGAGGCAG--CTTTGTGCT----GAGATGGAGAGATCTTGGCTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332211 40 + 114371477 GGGAGGCAG--CTTTGTGCT----GAGATGGAGAGATCTTGGCTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205619 40 + 637652 GGGAGGCAG--CTTTGTGCT----GAGATGGAGAGATCTTGGCTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005309 40 + 81552678 GGGAGGCAG--CTTTGTGCT----GAGACGGAGAGATCTTGGCTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263293 40 + 108979918 GGGAGGCAG--CTTTGTGCT----GGGATGGAGAGGTCTTGGCTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976383 40 - 111193037 GGGAGGCAG--CTTTGTGCT----GGGATGGAGAGGTCTTGGCTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371390 40 + 3644372 GGGAGGCAG--CTTTGTGCT----GGGATGGAGAGGTCTTGGCTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324312 40 - 10304083 GGGAGGCAG--CTTTGTGCT----GGGATGGAGAGGTCTTGGCTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408573 40 - 107702431 GGGAGGCAG--CTTTGTGCT----GGGATGGAGAGGTCTTGGCTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929546 40 + 1565135 GGGAGGCAG--CTTTGTGCT----GGGATGGAGAGGTCTTGGCTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314840 40 - 13651311 GGGAGGCAG--CTTTGTGCT----GGGATGGAGAGATCTTGGCTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400320 40 - 108792865 CGGAGGCAG--CTCTGTGCT----GAGATGGAGAGATCTTGGCTTT i calJac3.chr14 C 0 I 11 s saiBol1.JH378218 3063736 40 - 7082604 GGGAGGCAG--CTTTGTGCT----GAGATGGAGAGATCTTGGCTTT i saiBol1.JH378218 C 0 I 11 s cebCap1.NW_016107454v1 549863 40 + 5243153 GGGAGGCAG--CTCTGGGCT----GAGATGGAGAGGTCTTGGCTTT i cebCap1.NW_016107454v1 I 12 I 22 s aotNan1.NW_018507213v1 1878611 40 - 1938448 GGGAGGCAG--CTCAGTGCT----AAGATGGAGAGATCTTGGCTTT i aotNan1.NW_018507213v1 C 0 I 9 s canFam3.chr17 2007751 44 + 64289059 -GAAAGCAGA-CCCTTTGCTCACGGGGATGGAGAGGTTTTTCATTC i canFam3.chr17 C 0 I 14 s dasNov3.JH580157 503841 45 + 2232271 CGAAGGTAGGCTTTTTTGCT-AGTGAGATGGAAAGATTTTGGTCTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I a score=91849.000000 s hg38.chr2_KI270769v1_alt 8120 10 + 120616 CTCCACCCCC s panTro5.chr2A 3445496 10 + 111504155 CTCCACCCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332251 10 + 114371477 CTCCACCCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205659 10 + 637652 CTCCACCCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005349 10 + 81552678 CTCCACCCTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263333 10 + 108979918 CTCCACCCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976423 10 - 111193037 CTCCACCCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371430 10 + 3644372 CTCCACCCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324352 10 - 10304083 CTCCGCCCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408613 10 - 107702431 CTCCACCCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929586 10 + 1565135 CTCCGCCCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314880 10 - 13651311 CTCCACCCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400371 9 - 108792865 -CCCCTGCCC i calJac3.chr14 I 11 I 1 s saiBol1.JH378218 3063787 9 - 7082604 -CCCCCGCCC i saiBol1.JH378218 I 11 I 1 s aotNan1.NW_018507213v1 1878660 10 - 1938448 CTCCCCCCTC i aotNan1.NW_018507213v1 I 9 I 3 s canFam3.chr17 2007809 10 + 64289059 CCCCCCCCCC i canFam3.chr17 I 14 C 0 s dasNov3.JH580157 503886 10 + 2232271 GTCCAACCCC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 549903 22 + 5243153 I a score=349633.000000 s hg38.chr2_KI270769v1_alt 8130 31 + 120616 CATCTTGGGGTTGTCCTAGTTTGAGTCTTTC-- s panTro5.chr2A 3445506 31 + 111504155 CATCTTGGGGTTGTCCTAGTTTGAGTCTTTC-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332261 31 + 114371477 CATCTTGGGGTTGTCCTAGTTTGAGTCTTTC-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205669 31 + 637652 CATCTTGGGGTTGTCCTAGTTTGAGTCTTTC-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005359 31 + 81552678 TATCTTGGGGTTGTCCTAGTTTGAGTCTTTC-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263343 31 + 108979918 CATCTTGGGGTTGTCCTAGTTTGAGTCTTTC-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976433 31 - 111193037 CATCTTGGGGTTGTCCTAGTTTGAGTCTTTC-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371440 31 + 3644372 CATCTTGGGGTTGTCCTAGTTTGAGTCTTTC-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324362 31 - 10304083 CATCTTGGGGTTGTCCTAGTGTGAGTCTTTC-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408623 31 - 107702431 CATCTTGGGGTTGTCCTAGTTTGAGTCTTTC-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929596 31 + 1565135 CATCTTGGGGTTGTCCTAGTTTGAGTCTTTC-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314890 31 - 13651311 CATCTTGGGGTTGTCCTAGTTTGAGTCTTTC-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400381 31 - 108792865 CATCTTGGGGTTGTCCTAGTTCAAGTCTTTC-- i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3063797 31 - 7082604 CATCTTGGGGTTGTCCTAGTTCAAGTCTTTC-- i saiBol1.JH378218 I 1 C 0 s cebCap1.NW_016107454v1 549925 31 + 5243153 CATCTTAGGGTTGTCCTAGTTCAAGCCTTTC-- i cebCap1.NW_016107454v1 I 22 C 0 s aotNan1.NW_018507213v1 1878673 31 - 1938448 CATCTTGGGGTTGTCCTAGTTCAAGTCTTTC-- i aotNan1.NW_018507213v1 I 3 C 0 s canFam3.chr17 2007819 23 + 64289059 CACCC--------CCCCAGGTTGGATTTCTC-- i canFam3.chr17 C 0 I 1238 s dasNov3.JH580157 503896 31 + 2232271 --TTTCGAGGTTATCCTAGTTTAGGCTTCTGTC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I a score=612895.000000 s hg38.chr2_KI270769v1_alt 8161 58 + 120616 TTCTGCTCACCCG--------AGAGACTGCAGGGACTTTGTG---CTGTGTCCCTGTCAGCAGCTGCTG s panTro5.chr2A 3445537 58 + 111504155 TTCTGCTCACCCG--------AGAGACTGCAGGGACTTTGTG---CTGTGTCCCTGTCAGCAGCTGCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332292 58 + 114371477 TTCTGCTCACCCG--------AGAGACTGCAGGGACTTTGTG---CTGTGTCCCTGTCAGCAGCTGCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205700 58 + 637652 TTCTGCTCACCCG--------AGAGACTGCAGGGACTTTGTG---CTGTGTCCCTGTCAGCAGCTGCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005390 58 + 81552678 TTCTGCTCACCCG--------AGAGACTGCAGGGCCTTTGTG---TTGTGTCCCTGTCAGCAGCTGCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263374 58 + 108979918 TTCTGTTCACCCG--------AGAGACTGCAGGGCCTTTGTG---CCGTGTCCCTGTCAGCAGCTGCTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976464 58 - 111193037 TTCTGTTCACCCG--------AGAGACTGCAGGGCCTTTGTG---CCGTGTCCCTGTCAGCAGCTGCTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371471 58 + 3644372 TTCTGTTCACCCG--------AGAGACTGCAGGGCCTTTGTG---CCGTGTCCCTGTCAGCAGCTGCTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324393 58 - 10304083 TTCTGTTCACCCG--------AGAGACTGCAGGGCCTTTGTG---CCGTGTCCCTGTCAGCAGCTGCTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408654 58 - 107702431 TTCTGTTCACCCG--------AGAGACTGCAGGGCCTTTGTG---CCGTGTCCCTGTCAGCAGCTGCTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929627 58 + 1565135 TTCTGTTCACCCG--------AGAGACTGCAGGGCCTTTGTG---CCGTGTCCCTGTCAGCAGCTGCTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314921 58 - 13651311 TTCTGTTCACCTG--------AGAGACTGCAGGGCCTTTGTG---CCGTGTCCCTGTCAGCAGCTGTTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400412 58 - 108792865 TTCTGCTCACCGG--------AGACACTGCAGGGCCTTTGTG---CTGTGTCCCTGGCAGCAGCTGCTG i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3063828 58 - 7082604 TTCTGCTCACCGG--------AGACACTGCAGGGCCTTTGTG---CAGTGTCCCTGGCAGCAGCTGCTG i saiBol1.JH378218 C 0 I 1 s cebCap1.NW_016107454v1 549956 58 + 5243153 TTTCTTTCACTGG--------AGACACTGCAGGGCCTTTGTG---CTGTGTCCCTGGCAGCAGCTGCTG i cebCap1.NW_016107454v1 C 0 I 21 s aotNan1.NW_018507213v1 1878704 58 - 1938448 TTCTGCTCACCGG--------AGACACTGAAGGGCCTTTGTG---CTGTGTCCCTGGCAGCAGCTGCTG i aotNan1.NW_018507213v1 C 0 I 63 s dasNov3.JH580157 503927 69 + 2232271 TGAGGTTCACTAGGGAGTTGTGGAGACCTCAGGGCTTTTGTGCTTCTGTTTCTCTGCCAGGAGCCCTCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I a score=64128.000000 s hg38.chr2_KI270769v1_alt 8219 10 + 120616 ---------------------------CGGGCCAGAC s panTro5.chr2A 3445595 10 + 111504155 ---------------------------CGGGCCAGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332350 10 + 114371477 ---------------------------CGGGCCAGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205758 10 + 637652 ---------------------------TGGGCCAGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005448 10 + 81552678 ---------------------------CGGGCCAGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263432 10 + 108979918 ---------------------------CGGGCCAGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976522 10 - 111193037 ---------------------------CGGGCCAGAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371529 10 + 3644372 ---------------------------CGGGCCAGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324451 10 - 10304083 ---------------------------CGGGCCAGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408712 10 - 107702431 ---------------------------CGGGCCAGAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929685 10 + 1565135 ---------------------------CGGGCCAGAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314979 10 - 13651311 ---------------------------CGGGCCAGAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400471 10 - 108792865 ---------------------------CAGGTCACAT i calJac3.chr14 I 1 I 10 s saiBol1.JH378218 3063887 10 - 7082604 ---------------------------CAGGTCACAT i saiBol1.JH378218 I 1 I 10 s dasNov3.JH580157 503996 37 + 2232271 AGGATACTCTTGAGCAGCACCGCAGCCCTGCCCGGAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550014 21 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I a score=356164.000000 s hg38.chr2_KI270769v1_alt 8229 42 + 120616 GCCCAGAG-CACGTGTCA-GGGAAGATCCAGCCAGCTCC-GGCTG------ s panTro5.chr2A 3445605 42 + 111504155 GCCCAGAG-CACGTGTCA-GGGAAGATCCAGCCAGCTCC-AGCTG------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332360 42 + 114371477 GCCCAGAG-CACGTGTCA-GGGAAGATCCAGCCAGCTCC-AGCTG------ i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205768 43 + 637652 GCCCAGAG-CACATGTCA-GGGAAGATCCAGCCAGCTCCGGGCTG------ i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005458 43 + 81552678 GCCCAGAG-CACGTGTCA-GGGAAGGTCCAGCCAGCTCCGGGCTG------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263442 43 + 108979918 GCCCAGAG-CACATGTCA-GGGAAGGTCCAGCCAGTTCCCGGCTG------ i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976532 43 - 111193037 GCCCAGAG-CACATGTCA-GGGAAGGTCCAGCCAGTTCCCGGCTG------ i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371539 43 + 3644372 GCCCAGAG-CACATGTCA-GGGAAGGTCCAGCCAGTTCCCGGCTG------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324461 43 - 10304083 GCCCAGAG-CACATGTCA-GGGAAGGTCCAGCCAGTTCCTGGCTG------ i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408722 43 - 107702431 GCCCAGAG-CACATGTCA-GGGAAGGTCCAGCCAGTTCCCGGCTG------ i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929695 43 + 1565135 GCCCAGAG-CACATGTCA-GGGAAGGTCCAGCCAGTTCCTGGCTG------ i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3314989 43 - 13651311 GCCCAGAG-CACATGTCA-GGGAAGGTCCAGCCGGTTCCCGGCTG------ i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400491 42 - 108792865 GCCCAGAG-CACATGTCC-GGGAAGGTCCCGCCAGCTCCGGGCA------- i calJac3.chr14 I 10 T 7 s saiBol1.JH378218 3063907 42 - 7082604 GCCCAGAG-CACATGTCA-GGGAAGGTCCCGCCAGCTCCGGGCG------- i saiBol1.JH378218 I 10 I 13 s cebCap1.NW_016107454v1 550035 42 + 5243153 GCCCAGAG-CGCATGTCA-GGGAAGGTCCCGCCAGCTCCGGGCG------- i cebCap1.NW_016107454v1 I 21 I 1 s dasNov3.JH580157 504033 51 + 2232271 GCCGAGAGCCGTGTGTCACGGGAAGGGCAGGCTGACCCCGGGCTACCCCTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I a score=75119.000000 s hg38.chr2_KI270769v1_alt 8271 13 + 120616 ---CTTGCTGTCTCCA s panTro5.chr2A 3445647 13 + 111504155 ---CTTGCTGTCTCCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332402 13 + 114371477 ---CTTGCTGTCTCCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205811 13 + 637652 ---CTTGCTGTCTCCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005501 13 + 81552678 ---CTTGCTGTCTCCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263485 13 + 108979918 ---CTTGCTGTCTCCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976575 13 - 111193037 ---CTTGCTGTCTCCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371582 13 + 3644372 ---CTTGCTGTCTCCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324504 13 - 10304083 ---CTTGCTGTCTCCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408765 13 - 107702431 ---CTTGCTGTCTCCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929738 13 + 1565135 ---CTTGCTGTCTCCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315032 13 - 13651311 ---CTTGCTGTCTCCG i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 504084 13 + 2232271 AGCCCTGTCACCT--- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e saiBol1.JH378218 3063949 13 - 7082604 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400533 7 - 108792865 T a score=49361.000000 s hg38.chr2_KI270769v1_alt 8284 6 + 120616 GGCATT s panTro5.chr2A 3445660 6 + 111504155 GGCATT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332415 6 + 114371477 GGCATT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205824 6 + 637652 GGCATT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005514 6 + 81552678 GGCATT i nomLeu3.chr19 C 0 I 2 s rheMac8.chr13 3263498 6 + 108979918 GGCATT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976588 6 - 111193037 GGCATT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371595 6 + 3644372 GGCATT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324517 6 - 10304083 GGCATT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408778 6 - 107702431 GGCATT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929751 6 + 1565135 GGCATT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315045 6 - 13651311 GGCATT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3063962 6 - 7082604 GGCATT i saiBol1.JH378218 I 13 C 0 s dasNov3.JH580157 504097 6 + 2232271 TGCATT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400533 7 - 108792865 T a score=12438.000000 s hg38.chr2_KI270769v1_alt 8290 2 + 120616 TC s panTro5.chr2A 3445666 2 + 111504155 TC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332421 2 + 114371477 TC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205830 2 + 637652 TC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3263504 2 + 108979918 TC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976594 2 - 111193037 TC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371601 2 + 3644372 TC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324523 2 - 10304083 TC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408784 2 - 107702431 TC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929757 2 + 1565135 TC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315051 2 - 13651311 TC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3063968 2 - 7082604 TC i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 504103 2 + 2232271 GC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400533 7 - 108792865 T e nomLeu3.chr19 3005520 2 + 81552678 I a score=17381.000000 s hg38.chr2_KI270769v1_alt 8292 2 + 120616 AG s panTro5.chr2A 3445668 2 + 111504155 AG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332423 2 + 114371477 AG i panPan2.chr2A C 0 I 3 s gorGor5.CYUI01015435v1 205832 2 + 637652 AG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005522 2 + 81552678 AG i nomLeu3.chr19 I 2 C 0 s rheMac8.chr13 3263506 2 + 108979918 AG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976596 2 - 111193037 AG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371603 2 + 3644372 AG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324525 2 - 10304083 AG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408786 2 - 107702431 AG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929759 2 + 1565135 AG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315053 2 - 13651311 AG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3063970 2 - 7082604 AG i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 504105 2 + 2232271 AG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400533 7 - 108792865 T a score=11137.000000 s hg38.chr2_KI270769v1_alt 8294 2 + 120616 GG s panTro5.chr2A 3445670 2 + 111504155 GG i panTro5.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 205834 2 + 637652 GG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005524 2 + 81552678 GG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263508 2 + 108979918 GG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976598 2 - 111193037 GG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371605 2 + 3644372 GG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324527 2 - 10304083 GG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408788 2 - 107702431 GG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929761 2 + 1565135 GG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315055 2 - 13651311 GA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3063972 2 - 7082604 GG i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 504107 2 + 2232271 AA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400533 7 - 108792865 T e panPan2.chr2A 3332425 3 + 114371477 I a score=163379.000000 s hg38.chr2_KI270769v1_alt 8296 22 + 120616 ACCTCAGAGCCACTGCTTCCTC s panTro5.chr2A 3445672 22 + 111504155 ACCTCAGAGCCACTGCTTCCTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332428 22 + 114371477 ACCTCAGAGCCACTGCTTCCTC i panPan2.chr2A I 3 C 0 s gorGor5.CYUI01015435v1 205836 22 + 637652 ACCTCAGAGCCACTGCTTCCTC i gorGor5.CYUI01015435v1 C 0 I 171 s nomLeu3.chr19 3005526 22 + 81552678 ACCTCAGAACCACTGCTTCCTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263510 22 + 108979918 ACCTCAGAGCCACTGCTTCCTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976600 22 - 111193037 ACCTCAGAGCCACTGCTTCCTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371607 22 + 3644372 ACCTCAGAGCCACTGCTTCCTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324529 22 - 10304083 ACCTCAGAGCCACTGCTTCCTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408790 22 - 107702431 ACCTCAGAGCCACTGCTTCCTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929763 22 + 1565135 ACCTCAGAGCCACTGCTTCCTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315057 22 - 13651311 ACCTCAGAACCACTGCTTCCTC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3063974 22 - 7082604 ACCTCAGCGCAGCTGCCCTTTC i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 504109 22 + 2232271 ACTTCGGAGCAGCTGCTCCCCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400533 7 - 108792865 T a score=16282.000000 s hg38.chr2_KI270769v1_alt 8318 3 + 120616 -CTC s panTro5.chr2A 3445694 3 + 111504155 -CTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332450 3 + 114371477 -CTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206029 3 + 637652 -CTC i gorGor5.CYUI01015435v1 I 171 C 0 s nomLeu3.chr19 3005548 3 + 81552678 -CTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263532 3 + 108979918 -CTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976622 3 - 111193037 -CTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371629 3 + 3644372 -CTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324551 3 - 10304083 -CTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408812 3 - 107702431 -CTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929785 3 + 1565135 -CTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315079 3 - 13651311 -CTC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3063996 3 - 7082604 -CCC i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 504131 3 + 2232271 ACC- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400533 7 - 108792865 T a score=47199.000000 s hg38.chr2_KI270769v1_alt 8321 7 + 120616 CCAGGAT s panTro5.chr2A 3445697 7 + 111504155 CCAGGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332453 7 + 114371477 CCAGGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206032 7 + 637652 CCAGGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005551 7 + 81552678 CCAGGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263535 7 + 108979918 CCAGGCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976625 7 - 111193037 CCAGGCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371632 7 + 3644372 CCAGGCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324554 7 - 10304083 CCAGGCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408815 7 - 107702431 CCAGGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929788 7 + 1565135 CCAGGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315082 7 - 13651311 CCAGGCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400526 7 - 108792865 CCGGGCA i calJac3.chr14 T 7 C 0 s saiBol1.JH378218 3063999 7 - 7082604 CTGGGCT i saiBol1.JH378218 C 0 T 57 s dasNov3.JH580157 504134 7 + 2232271 CCAGCAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I a score=129222.000000 s hg38.chr2_KI270769v1_alt 8328 17 + 120616 -GCTCACTGTCTCTGGCA s panTro5.chr2A 3445704 17 + 111504155 -GCTCACTGTCTCTGGCA i panTro5.chr2A C 0 I 57 s panPan2.chr2A 3332460 17 + 114371477 -GCTCACTGTCTCTGGTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206039 17 + 637652 -GCTCACTGTCTCTGGCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005558 17 + 81552678 -GCTCACTGTCTCTGGGC i nomLeu3.chr19 C 0 I 1 s rheMac8.chr13 3263542 17 + 108979918 -GCTCACTGTCTCTGGCA i rheMac8.chr13 C 0 T 57 s macFas5.chr13 4976632 17 - 111193037 -GCTCACTGTCTCTGGCA i macFas5.chr13 C 0 T 57 s macNem1.NW_012011978v1 3371639 17 + 3644372 -GCTCACTGTCTCTGGCA i macNem1.NW_012011978v1 C 0 T 57 s cerAty1.NW_012000820v1 3324561 17 - 10304083 -GCTCACTGTCAATGGCA i cerAty1.NW_012000820v1 C 0 T 57 s chlSab2.chr14 3408822 17 - 107702431 -GCTCACTGTCTCTGGCA i chlSab2.chr14 C 0 T 57 s manLeu1.NW_012104432v1 929795 17 + 1565135 -GCTCACTGTCAATGGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315089 17 - 13651311 -GCTCACTGTCTCTGGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400533 17 - 108792865 -GCTCGCTGTCTCTGGCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063949 17 - 7082604 -GCTCACTGTCTCTGGCA i saiBol1.JH378218 T 57 C 0 s dasNov3.JH580157 504141 18 + 2232271 CTTTCCTAGACAGTGGCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I a score=9282.000000 s hg38.chr2_KI270769v1_alt 8345 2 + 120616 --TT s panTro5.chr2A 3445778 2 + 111504155 --TT i panTro5.chr2A I 57 C 0 s panPan2.chr2A 3332477 2 + 114371477 --TT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206056 2 + 637652 --TT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005576 2 + 81552678 --TT i nomLeu3.chr19 I 1 T 58 s rheMac8.chr13 3263502 2 + 108979918 --TT i rheMac8.chr13 T 57 C 0 s macFas5.chr13 4976592 2 - 111193037 --TT i macFas5.chr13 T 57 C 0 s macNem1.NW_012011978v1 3371599 2 + 3644372 --TT i macNem1.NW_012011978v1 T 57 C 0 s cerAty1.NW_012000820v1 3324521 2 - 10304083 --TT i cerAty1.NW_012000820v1 T 57 C 0 s chlSab2.chr14 3408782 2 - 107702431 --TT i chlSab2.chr14 T 57 C 0 s manLeu1.NW_012104432v1 929812 2 + 1565135 --TT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315106 2 - 13651311 --TT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400550 2 - 108792865 --TT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063966 2 - 7082604 --TT i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 504159 2 + 2232271 AA-- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I a score=19656.000000 s hg38.chr2_KI270769v1_alt 8347 3 + 120616 TCA-- s panTro5.chr2A 3445780 3 + 111504155 TCA-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332479 3 + 114371477 TCA-- i panPan2.chr2A C 0 T 57 s gorGor5.CYUI01015435v1 206058 3 + 637652 TCA-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005520 3 + 81552678 TCA-- i nomLeu3.chr19 T 58 C 0 s rheMac8.chr13 3263504 3 + 108979918 TCA-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976594 3 - 111193037 TCA-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371601 3 + 3644372 TCA-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324523 3 - 10304083 TCA-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408784 3 - 107702431 TCA-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929814 3 + 1565135 TCA-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315108 3 - 13651311 TCA-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400552 3 - 108792865 TCA-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063968 3 - 7082604 TCA-- i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 504161 3 + 2232271 --AGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I a score=82901.000000 s hg38.chr2_KI270769v1_alt 8350 10 + 120616 GGGACCTCAG s panTro5.chr2A 3445783 10 + 111504155 GGGACCTCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332425 10 + 114371477 GGTACCTCAG i panPan2.chr2A T 57 C 0 s gorGor5.CYUI01015435v1 206061 10 + 637652 GGGACCTCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005523 10 + 81552678 GGGACCTCAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263507 10 + 108979918 GGGACCTCAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976597 10 - 111193037 GGGACCTCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371604 10 + 3644372 GGGACCTCAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324526 10 - 10304083 GGGACCTCAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408787 10 - 107702431 GGGACCTCAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929817 10 + 1565135 GGGACCTCAG i manLeu1.NW_012104432v1 C 0 T 57 s colAng1.NW_012118821v1 3315111 10 - 13651311 GGGACCTCAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400555 10 - 108792865 GGGACCTCAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063971 10 - 7082604 GGGACCTCAG i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 504164 4 + 2232271 GGGA------ i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I a score=225580.000000 s hg38.chr2_KI270769v1_alt 8360 38 + 120616 AGCCACTGCTTCCTCCTCCCAGGATGCTC----------ACTGTCTCT s panTro5.chr2A 3445793 38 + 111504155 AGCCACTGCTTCCTCCTCCCAGGATACTC----------ACTGTCTCT i panTro5.chr2A C 0 T 110 s panPan2.chr2A 3332435 38 + 114371477 AGCCACTGCTTCCTCCTCCCAGGATGCTC----------ACTGTCTCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206071 38 + 637652 AGCCACTGCTTCCTCCTCCCAGGATGCTC----------ACTGTCTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005533 38 + 81552678 AACCACTGCTTCCTCCTCCCAGGATGCTC----------ACTGTCTCT i nomLeu3.chr19 C 0 I 1 s rheMac8.chr13 3263517 38 + 108979918 AGCCACTGCTTCCTCCTCCCAGGCTGCTC----------ACTGTCTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976607 38 - 111193037 AGCCACTGCTTCCTCCTCCCAGGCTGCTC----------ACTGTCTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371614 38 + 3644372 AGCCACTGCTTCCTCCTCCCAGGCTGCTC----------ACTGTCTCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324536 38 - 10304083 AGCCACTGCTTCCTCCTCCCAGGCTGCTC----------ACTGTCAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408797 38 - 107702431 AGCCACTGCTTCCTCCTCCCAGGCTGCTC----------ACTGTCTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929770 38 + 1565135 AGCCACTGCTTCCTCCTCCCAGGCTGCTC----------ACTGTCAAT i manLeu1.NW_012104432v1 T 57 C 0 s colAng1.NW_012118821v1 3315121 38 - 13651311 AGCCACTGCTTCGTCCTCCCAGGCTGCTC----------ACTGTCTCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400565 48 - 108792865 CGCAGCTGCCCTTTCCCCCTGGGCTGCTCTATCCCCGATGCTGCCCCC i calJac3.chr14 C 0 I 6 s saiBol1.JH378218 3063981 48 - 7082604 CGCAGCTGCCCTTTCCCCCTGGGCTGCTCTATCCCCGCTGCTGTCCCC i saiBol1.JH378218 C 0 I 6 s dasNov3.JH580157 504168 4 + 2232271 ----------------------GATG---------------------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I a score=21159.000000 s hg38.chr2_KI270769v1_alt 8398 4 + 120616 GGCG- s panPan2.chr2A 3332473 4 + 114371477 GGTA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206109 4 + 637652 GGCG- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005572 4 + 81552678 GGCA- i nomLeu3.chr19 I 1 C 0 s rheMac8.chr13 3263555 4 + 108979918 GGCA- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976645 4 - 111193037 GGCA- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371652 4 + 3644372 GGCA- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324574 4 - 10304083 GGCA- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408835 4 - 107702431 GGCA- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 929808 4 + 1565135 GGCA- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315159 4 - 13651311 GGCA- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400619 4 - 108792865 GGCA- i calJac3.chr14 I 6 C 0 s saiBol1.JH378218 3064035 4 - 7082604 GGCA- i saiBol1.JH378218 I 6 C 0 s dasNov3.JH580157 504172 4 + 2232271 -GCTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e panTro5.chr2A 3445831 110 + 111504155 T a score=133399.000000 s hg38.chr2_KI270769v1_alt 8402 15 + 120616 TTTCAGGGACCTCAG s panTro5.chr2A 3445721 15 + 111504155 TTTCAGGGACCTCAG i panTro5.chr2A T 110 C 0 s panPan2.chr2A 3332477 15 + 114371477 TTTCAGGGACCTCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206113 15 + 637652 TTTCAGGGACCTCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005576 15 + 81552678 TTTCAGGGACCTCAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263559 15 + 108979918 TTTCAGGGACCTCAG i rheMac8.chr13 C 0 T 57 s macFas5.chr13 4976649 15 - 111193037 TTTCAGGGACCTCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371656 15 + 3644372 TTTCAGGGACCTCAG i macNem1.NW_012011978v1 C 0 T 57 s cerAty1.NW_012000820v1 3324578 15 - 10304083 TTTCAGGGACCTCAG i cerAty1.NW_012000820v1 C 0 T 15 s chlSab2.chr14 3408839 15 - 107702431 TTTCAGGGACCTCAG i chlSab2.chr14 C 0 T 57 s manLeu1.NW_012104432v1 929812 15 + 1565135 TTTCAGGGACCTCAG i manLeu1.NW_012104432v1 C 0 I 2300 s colAng1.NW_012118821v1 3315163 15 - 13651311 TTTCAGGGACCTCAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400623 15 - 108792865 TTTCAGGGACCTCAG i calJac3.chr14 C 0 T 104 s saiBol1.JH378218 3064039 15 - 7082604 TTTCAGGAACCTCAG i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 504176 13 + 2232271 TTTCAGAGCTCTC-- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I a score=85620.000000 s hg38.chr2_KI270769v1_alt 8417 23 + 120616 AGCCACTGCTTCCTCCTCCCAGG s panTro5.chr2A 3445736 23 + 111504155 AGCCACTGCTTCCTCCTCCCAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332492 23 + 114371477 AGCCACTGCTTCCTTCTCCCAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206128 23 + 637652 AGCCACTCCTTCCTCCTCCCGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005591 23 + 81552678 AACCACTGCTTCCTCCTCCCGGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263517 23 + 108979918 AGCCACTGCTTCCTCCTCCCAGG i rheMac8.chr13 T 57 C 0 s macFas5.chr13 4976664 23 - 111193037 TGCTGCTGCCCTTTCCCCCTGGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371614 23 + 3644372 AGCCACTGCTTCCTCCTCCCAGG i macNem1.NW_012011978v1 T 57 C 0 s chlSab2.chr14 3408797 23 - 107702431 AGCCACTGCTTCCTCCTCCCAGG i chlSab2.chr14 T 57 C 0 s colAng1.NW_012118821v1 3315178 23 - 13651311 AGCCACTGCTTCCTCCTCCCAGG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3064054 20 - 7082604 ---CACTGCTGCCCCCCTCCAGG i saiBol1.JH378218 C 0 T 124 s dasNov3.JH580157 504189 12 + 2232271 ----------TTCATGTCACAG- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400638 104 - 108792865 T e manLeu1.NW_012104432v1 929827 2300 + 1565135 I e cerAty1.NW_012000820v1 3324593 15 - 10304083 T a score=4457.000000 s hg38.chr2_KI270769v1_alt 8440 3 + 120616 ATA s panTro5.chr2A 3445759 3 + 111504155 ATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332515 3 + 114371477 ATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206151 3 + 637652 ATG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005614 3 + 81552678 ATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263540 3 + 108979918 CTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976687 3 - 111193037 CTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371637 3 + 3644372 CTG i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3408820 3 - 107702431 CTG i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3315201 3 - 13651311 CTG i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e saiBol1.JH378218 3064074 124 - 7082604 T e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e dasNov3.JH580157 504201 0 + 2232271 C e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400638 104 - 108792865 T e manLeu1.NW_012104432v1 929827 2300 + 1565135 I e cerAty1.NW_012000820v1 3324593 15 - 10304083 T a score=20932.000000 s hg38.chr2_KI270769v1_alt 8443 4 + 120616 CTCA s panTro5.chr2A 3445762 4 + 111504155 CTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332518 4 + 114371477 CTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206154 4 + 637652 CTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005617 4 + 81552678 CTCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263543 4 + 108979918 CTCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976690 4 - 111193037 CTCT i macFas5.chr13 C 0 T 57 s macNem1.NW_012011978v1 3371640 4 + 3644372 CTCA i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3408823 4 - 107702431 CTCA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3315204 4 - 13651311 CTCA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3063950 4 - 7082604 CTCA i saiBol1.JH378218 T 124 C 0 s dasNov3.JH580157 504201 4 + 2232271 CTCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400638 104 - 108792865 T e manLeu1.NW_012104432v1 929827 2300 + 1565135 I e cerAty1.NW_012000820v1 3324593 15 - 10304083 T a score=41569.000000 s hg38.chr2_KI270769v1_alt 8447 8 + 120616 CTGTCTCT- s panTro5.chr2A 3445766 8 + 111504155 CTGTCTCT- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332522 8 + 114371477 CTGTCTCT- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206158 8 + 637652 CTGTCTCT- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005621 8 + 81552678 CTGTCTCT- i nomLeu3.chr19 C 0 I 1 s rheMac8.chr13 3263547 8 + 108979918 CTGTCTCT- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976637 8 - 111193037 CTGTCTCT- i macFas5.chr13 T 57 C 0 s macNem1.NW_012011978v1 3371644 8 + 3644372 CTGTCTCT- i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3408827 8 - 107702431 CTGTCTCT- i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3315208 8 - 13651311 CTGTCTCT- i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3063954 8 - 7082604 CTGTCTCT- i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 504205 9 + 2232271 CTGTCCTCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400638 104 - 108792865 T e manLeu1.NW_012104432v1 929827 2300 + 1565135 I e cerAty1.NW_012000820v1 3324593 15 - 10304083 T a score=107869.000000 s hg38.chr2_KI270769v1_alt 8455 19 + 120616 GGCGTTTCAGGGACCTCAG s panTro5.chr2A 3445774 19 + 111504155 GGCGTTTCAGGGACCTCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332530 19 + 114371477 GGCGTTTCAGGGACCTCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206166 19 + 637652 GGCGTTTCAGGGACCTCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005630 19 + 81552678 GGCGTTTCAGGGACCTCAG i nomLeu3.chr19 I 1 C 0 s rheMac8.chr13 3263555 19 + 108979918 GGCATTTCAGGGACCTCAG i rheMac8.chr13 C 0 T 15 s macFas5.chr13 4976645 19 - 111193037 GGCATTTCAGGGACCTCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371652 19 + 3644372 GGCATTTCAGGGACCTCAG i macNem1.NW_012011978v1 C 0 T 15 s chlSab2.chr14 3408835 19 - 107702431 GGCATTTCAGGGACCTCAG i chlSab2.chr14 C 0 T 15 s manLeu1.NW_012104432v1 932127 19 + 1565135 GGCATTTCAGGGACCTCAG i manLeu1.NW_012104432v1 I 2300 C 0 s colAng1.NW_012118821v1 3315216 19 - 13651311 GGCATTTCAGGGACCTCAG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3063962 19 - 7082604 GGCATTTCAGGGACCTCAG i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 504214 8 + 2232271 TGCCCGTC----------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400638 104 - 108792865 T e cerAty1.NW_012000820v1 3324593 15 - 10304083 T a score=24183.000000 s hg38.chr2_KI270769v1_alt 8474 10 + 120616 AGCCACTGCT s panTro5.chr2A 3445793 10 + 111504155 AGCCACTGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332549 10 + 114371477 AGCCACTGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206185 10 + 637652 AGCCACTGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005649 10 + 81552678 AGCCACTGCT i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 4976664 10 - 111193037 TGCTGCTGCC i macFas5.chr13 C 0 C 0 s manLeu1.NW_012104432v1 932146 10 + 1565135 AGCCACTGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315235 10 - 13651311 AGCCACTGCT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3063981 10 - 7082604 CGCAGCTGCC i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 504222 8 + 2232271 --TTACAAAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e otoGar3.GL873658 2489067 1469 + 5252280 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400638 104 - 108792865 T e chlSab2.chr14 3408854 15 - 107702431 T e cerAty1.NW_012000820v1 3324593 15 - 10304083 T e macNem1.NW_012011978v1 3371671 15 + 3644372 T e rheMac8.chr13 3263574 15 + 108979918 T a score=39888.000000 s hg38.chr2_KI270769v1_alt 8484 15 + 120616 TCCTCCTCCCAGGAT s panTro5.chr2A 3445803 15 + 111504155 TCCTCCTCCCAGGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332559 15 + 114371477 TCCTCCTCCCAGGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206195 15 + 637652 TCGTCCTCCCAGGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005659 15 + 81552678 TCCTCCTCCCAGGAT i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 4976674 15 - 111193037 CTTTCCCCCTGGACT i macFas5.chr13 C 0 C 0 s manLeu1.NW_012104432v1 932156 15 + 1565135 TCCTCCTCCCAGGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315245 15 - 13651311 TCCTCCTCCCAGGCT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3063991 15 - 7082604 CTTTCCCCCTGGGCT i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2490536 15 + 5252280 TCCTCCCCCCAGGGA i otoGar3.GL873658 I 1469 I 1 s dasNov3.JH580157 504230 10 + 2232271 ---TCCCCTTGGT-- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e aotNan1.NW_018507213v1 1878762 63 - 1938448 I e calJac3.chr14 3400638 104 - 108792865 T e chlSab2.chr14 3408854 15 - 107702431 T e cerAty1.NW_012000820v1 3324593 15 - 10304083 T e macNem1.NW_012011978v1 3371671 15 + 3644372 T e rheMac8.chr13 3263574 15 + 108979918 T a score=1826.000000 s hg38.chr2_KI270769v1_alt 8499 1 + 120616 A s panTro5.chr2A 3445818 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332574 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206210 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005674 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 4976689 1 - 111193037 G i macFas5.chr13 C 0 C 0 s manLeu1.NW_012104432v1 932171 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315260 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3064006 1 - 7082604 G i saiBol1.JH378218 C 0 T 57 s aotNan1.NW_018507213v1 1878825 1 - 1938448 A i aotNan1.NW_018507213v1 I 63 C 0 s otoGar3.GL873658 2490552 1 + 5252280 G i otoGar3.GL873658 I 1 C 0 s dasNov3.JH580157 504240 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e cebCap1.NW_016107454v1 550077 1 + 5243153 I e calJac3.chr14 3400638 104 - 108792865 T e chlSab2.chr14 3408854 15 - 107702431 T e cerAty1.NW_012000820v1 3324593 15 - 10304083 T e macNem1.NW_012011978v1 3371671 15 + 3644372 T e rheMac8.chr13 3263574 15 + 108979918 T a score=14979.000000 s hg38.chr2_KI270769v1_alt 8500 4 + 120616 -CTCA s panTro5.chr2A 3445819 4 + 111504155 -CTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332575 4 + 114371477 -CTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206211 4 + 637652 -CTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005675 2 + 81552678 -CT-- i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 4976690 4 - 111193037 -CTCT i macFas5.chr13 C 0 T 45 s manLeu1.NW_012104432v1 932172 4 + 1565135 -CTCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315261 4 - 13651311 -CTCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400534 4 - 108792865 -CTCG i calJac3.chr14 T 104 C 0 s saiBol1.JH378218 3063950 4 - 7082604 -CTCA i saiBol1.JH378218 T 57 C 0 s cebCap1.NW_016107454v1 550078 4 + 5243153 -CTCA i cebCap1.NW_016107454v1 I 1 C 0 s aotNan1.NW_018507213v1 1878826 4 - 1938448 -CTCG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2490553 4 + 5252280 -TCCA i otoGar3.GL873658 C 0 I 10 s dasNov3.JH580157 504241 5 + 2232271 CATCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e chlSab2.chr14 3408854 15 - 107702431 T e cerAty1.NW_012000820v1 3324593 15 - 10304083 T e macNem1.NW_012011978v1 3371671 15 + 3644372 T e rheMac8.chr13 3263574 15 + 108979918 T a score=55162.000000 s hg38.chr2_KI270769v1_alt 8504 12 + 120616 CTGTCTCTGGCG s panTro5.chr2A 3445823 12 + 111504155 CTGTCTCTGGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332579 12 + 114371477 CTGTCTCTGGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206215 12 + 637652 CTGTCTCTGGCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005677 12 + 81552678 CTGTCTCTGGCG i nomLeu3.chr19 C 0 C 0 s manLeu1.NW_012104432v1 932176 12 + 1565135 CTGTCAATGGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315265 12 - 13651311 CTGTCTCTGGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400538 12 - 108792865 CTGTCTCTGGCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063954 12 - 7082604 CTGTCTCTGGCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 550082 12 + 5243153 CTGTCTCTGGCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1878830 12 - 1938448 CTGTCTCTGGCA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2490567 12 + 5252280 CTCTCTTCAGCT i otoGar3.GL873658 I 10 I 1 s dasNov3.JH580157 504246 6 + 2232271 ATGCCT------ i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e chlSab2.chr14 3408854 15 - 107702431 T e cerAty1.NW_012000820v1 3324593 15 - 10304083 T e macNem1.NW_012011978v1 3371671 15 + 3644372 T e macFas5.chr13 4976694 45 - 111193037 T e rheMac8.chr13 3263574 15 + 108979918 T a score=549260.000000 s hg38.chr2_KI270769v1_alt 8516 51 + 120616 TTTCAGGGA---CCTCAGCGC---TGCTTCCCTTTCCCCCTGGGCTGCTCTATCCCC s panTro5.chr2A 3445835 51 + 111504155 TTTCAGGGA---CCTCAGCGC---TGCTTCCCTTTCCCCCTGGGCTGCTCTATCCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332591 51 + 114371477 TTTCAGGGA---CCTCAGCGC---TGCTTCCCTTTCCCCCTGGGCTGCTCTATCCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206227 51 + 637652 TTTCAGGGA---CCTCAGCGC---TGCTTCCCTTTCCCCCTGGGCTGCTCTATCCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005689 51 + 81552678 TTTCAGGGA---CCTCAGCGC---TGCTTCCCTTTCCCCCTGGGCTGCTCTATCCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263559 51 + 108979918 TTTCAGGGA---CCTCAGTGC---TGCTGCCCTTTCCCCCTGGACTGCTCTGTCCCC i rheMac8.chr13 T 15 C 0 s macFas5.chr13 4976649 51 - 111193037 TTTCAGGGA---CCTCAGTGC---TGCTGCCCTTTCCCCCTGGACTGCTCTGTCCCC i macFas5.chr13 T 45 C 0 s macNem1.NW_012011978v1 3371656 51 + 3644372 TTTCAGGGA---CCTCAGTGC---TGCTGCCCTTTCCCCCTGGACTGCTCTGTCCCC i macNem1.NW_012011978v1 T 15 C 0 s cerAty1.NW_012000820v1 3324578 51 - 10304083 TTTCAGGGA---CCTCAGTGC---TGCTGTCCTTTCCCCCTGGGCTGCTCTGTCCCC i cerAty1.NW_012000820v1 T 15 C 0 s chlSab2.chr14 3408839 51 - 107702431 TTTCAGGGA---CCTCAGTGC---TGCTGCCCTTTCCCCCTGGACTGCTCTATCCCC i chlSab2.chr14 T 15 C 0 s manLeu1.NW_012104432v1 932188 51 + 1565135 TTTCAGGGA---CCTCAGTGC---TGCTGCCCTTTCCCCCTGGGCTGCTCTGTCCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315277 51 - 13651311 TTTCAGGGA---CCTCAGTGC---TGCTGCCCTTTCCCCCTGGGCTGCTCTGTCCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400550 51 - 108792865 TTTCAGGGA---CCTCAGCGC---AGCTGCCCTTTCCCCCTGGGCTGCTCTATCCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3063966 51 - 7082604 TTTCAGGGA---CCTCAGCGC---AGCTGCCCTTTCCCCCTGGGCTGCTCTATCCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 550094 51 + 5243153 TTTCAGGGA---CCTCAGCAC---AGCTGCCCTTTCCCTCTGGGCTGCTCTATCCCC i cebCap1.NW_016107454v1 C 0 I 139 s aotNan1.NW_018507213v1 1878842 51 - 1938448 TTTCAGGGA---CCTCAGCGC---AGCTGCCCTTTCCCCCTGGGCTGCTCTATCCCC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2490580 54 + 5252280 TGCTAGAGA---CCTTGTTGCCTGTGCTGTGCTTCTCCTGCAGCAGCCGCTACCCCC i otoGar3.GL873658 I 1 I 10 s dasNov3.JH580157 504252 30 + 2232271 TTTCAAGAACTGCTTCATTGC---TTCTGCACT------------------------ i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I a score=232042.000000 s hg38.chr2_KI270769v1_alt 8567 29 + 120616 CCAGCTGCC-CCTGCCTCAGGTGTTTCAGG s panTro5.chr2A 3445886 29 + 111504155 CCGGCTGCC-CCCGCCTCAGGTGTTTCAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332642 29 + 114371477 CCGGCTGCC-CCCGCCTCAGGTGTTTCAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206278 29 + 637652 CCGGCTGCC-CCTGCCTCAGGTGTTTCAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005740 28 + 81552678 CCGGCT-TC-CCCGCCTCAGGCGTTTCAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263610 29 + 108979918 CCGGCTGCC-CCTGCCTCAGGTGTTTCAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976700 29 - 111193037 CTGGCTGCC-CCTGCCTCAGGTGTTTCAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371707 29 + 3644372 CCGGCTGCC-CCTGCCTCAGGTGTTTCAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324629 29 - 10304083 CCGGCTGCC-CCTGCCTCAGGTGTTTCAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408890 29 - 107702431 CTGGCTGCC-CCTGCCTCAGGTGTTTCAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 932239 29 + 1565135 CCGGCTGCC-CCTGCCTCAGGTGTTTCAGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315328 29 - 13651311 CCGGCTGCC-CCTCCCTCAGGTGTTTCAGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400601 29 - 108792865 GATGCTGCC-CCCGCCTCAGGCATTTCAGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3064017 29 - 7082604 GCTGCTGTC-CCCACATCAGGCATTTCAGG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1878893 29 - 1938448 ACCGCTGTC-CCCGCCTCAGGCATTTCAGG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2490644 29 + 5252280 CCAGCTGCTGCCTGTCTC-GGCATCTTGGT i otoGar3.GL873658 I 10 C 0 s dasNov3.JH580157 504282 9 + 2232271 ---GCCGCT-TCT----------------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e cebCap1.NW_016107454v1 550145 139 + 5243153 I a score=11504.000000 s hg38.chr2_KI270769v1_alt 8596 1 + 120616 G s panTro5.chr2A 3445915 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332671 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206307 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005768 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263639 1 + 108979918 G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976729 1 - 111193037 G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371736 1 + 3644372 G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324658 1 - 10304083 G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408919 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 932268 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315357 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400630 1 - 108792865 G i calJac3.chr14 C 0 I 365 s saiBol1.JH378218 3064046 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 550284 1 + 5243153 G i cebCap1.NW_016107454v1 I 139 C 0 s aotNan1.NW_018507213v1 1878922 1 - 1938448 G i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2490673 1 + 5252280 G i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e dasNov3.JH580157 504291 0 + 2232271 C a score=223625.000000 s hg38.chr2_KI270769v1_alt 8597 21 + 120616 ACCTCAG-------TGCTGCTGCCCCTT s panTro5.chr2A 3445916 21 + 111504155 ACCTCAG-------TGCTGCTGCCCCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332672 21 + 114371477 ACCTCAG-------TGCTGCTGCCCCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206308 21 + 637652 ACCTCAG-------TGCTGCTGCCCCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005769 21 + 81552678 ACCTCAG-------TGCTGCTGACCCTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263640 21 + 108979918 ACCTCAG-------TGCTGCTGCCCCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976730 21 - 111193037 ACCTCAG-------TGCTGCTGCCCCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371737 21 + 3644372 ACCTCAA-------TGCTGCTGCCCCTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324659 21 - 10304083 ACCTCAA-------TGCTGCTGCCCCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408920 21 - 107702431 ACCTCAA-------TGCTGCTGCCCCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 932269 21 + 1565135 ACCTCAA-------TGCTGCTGCCCCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315358 21 - 13651311 ACCTCAA-------TGCTGCTGCCCCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3400996 21 - 108792865 ACCTCAG-------CACTGCTGCCCCCC i calJac3.chr14 I 365 I 1 s saiBol1.JH378218 3064047 21 - 7082604 ACCTCAG-------CACTGCTGCCCCCC i saiBol1.JH378218 C 0 I 1 s cebCap1.NW_016107454v1 550285 21 + 5243153 ACCTCAG-------CACTGCTGCCCCCC i cebCap1.NW_016107454v1 C 0 I 1 s aotNan1.NW_018507213v1 1878923 21 - 1938448 ACCTCAG-------CACTGCTGCCCCCC i aotNan1.NW_018507213v1 C 0 I 4976 s otoGar3.GL873658 2490674 28 + 5252280 GCCTCAGAGGTGCTTGCTGCTCCCTCTC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 504291 20 + 2232271 -CCTTGG-------TGAGTCAGCCACTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I a score=3957888.000000 s hg38.chr2_KI270769v1_alt 8618 437 + 120616 -CCCAGGTGCCTTTCCTCAGTCAGCAGCACCCCC-----------------------------------------------------AGAAAGGAGAGAGATGGTCCAGGGCTGTGTCCTGG------TCCCAGCTGTGTGTGA---GAGGCGTCTCCTGCCG------CCCGT-----GGAGAGCATC---------------------GTGTCCTGTGAGCAGCCTTTACTTACCCTGGACTCTCCCTCGGC-CTGCGGTGCAGCCACCGAAACAGCactgaggcctgtggactgtgacagttttctctgcactgtTGGGATGACTAG-----TTTGTCCCCATA-CAACA---GACTTGGTAACTTCAGGCCC---------------------TTCCCTGGGG--------------CCCCTG--AACTGTGCCGACTCCCGAGGGTCATGAAGGCTGGCTCGCCC-------AGCAT--CTGGGCTTGACACTAG-CTGTGAGATTGCTCCCTGCTCAGGGCAGGTCATTGGCACATCTCTTCTGTCCCCAGGCCACA-CAAAAGCACCTGTTCTCC-CTCCCCTT- s panTro5.chr2A 3445937 437 + 111504155 -CCCAGGTGCCTTTCCTCAGTCAGCAGCACCCCC-----------------------------------------------------AGAAAGGAGAGAGATGGTCCAGGGCTGTGTCCTGG------TCCCAGCTGTGTGTGA---GAGGCGTCTCCTGCCG------CCCGT-----GGAGAGCATC---------------------GTGTCCTGTGAGCAGCCTTTACTTACCCTGGACTCTCCCTCGGC-CTGCAGTACAGCCACCGAAACAGCactgaggcctgtggactgtgacagttttctctgcactgtTGGGATGACTAG-----TTTGTCCCCATA-CAACA---GACTTGGTAACTTCAGGCCC---------------------TTCCCTGGGG--------------CCCCCG--AACCGTGCCGACTCCCGAGGGTCATGAAGGCTGGCTCGCCC-------AGCAT--CTGGGCTTGACACCAG-CTGTGAGATTGCTCCCTGCTCAGGGCAGGTCATTGGCACATCTCTTCTGTCCCCAGGCCACA-CAAAAGCACCTGTTCTCC-CTCCCCTT- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3332693 437 + 114371477 -CCCAGGTGCCTTTCCTCAGTCAGCAGCACCCCC-----------------------------------------------------AGAAAGGAGAGAGATGGTCCAGGGCTGTGTCCTGG------TCCCAGCTGTGTGTGA---GAGGCGTCTCCTGCCG------CCCGT-----GGAGAGCATC---------------------GTGTCCTGTGAGCAGCCTTTACTTACCCTGGACTCTCCCTCGGC-CTGCAGTGCAGCCACCGAAACAGCactgaggcctgtggactgtgacagttttctctgcactgtTGGGATGACTAG-----TTTGTCCCCATA-CAACA---GACTTGGTAACTTCAGGCCC---------------------TTCCCTGGGG--------------CCCCCG--AACCGTGCCGACTCCCGAGGGTCATGAAGGCTGGCTCGCCC-------AGCAT--CTGGGCTTGACACCAG-CTGTGAGATTGCTCCCTGCTCAGGGCAGGTCATTGGCACATCTCTTCTGTCCCCAGGCCACA-CAAAAGCACCTGTTCTCC-CTCCCCTT- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206329 437 + 637652 -CCCAGGTGCCTTTCCTCAGTCAGCAGCACCCCC-----------------------------------------------------AGAAAGGAGAGAGATGGTCCAGGGCTGTGTCCTGG------TCCCAGCTGTGTGTGA---GAGGCATCTCCTGCCA------CCCGT-----GGAGAGCATT---------------------GTGTCCTGTGAGCAGCCTTTACTAACCCTGGACTCTCCCTCGGC-CTGCGGTGCAGCCACCGAAACAGCactgaggcctgtggactgtgacagttttctctgcactgtTGGGATGACTAG-----TTTGTCCCCATA-CAACA---GACTTGGTAACTTCAGGCCC---------------------TTCCCTGGGG--------------CCCCCG--AACCGTGCCGACTCCCGAAGGTCATGAAGGCTGGCTCGCCC-------AGCAT--CTGGGCTTGACACCAG-CTGTGAGATTGCTCCCTGCTCAGGGCAGGTCATTGGCACATCTCTTCTGTCCCCAGGCCACA-CAAAAGCACCTGTTCTCC-CTCCCCTT- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3005790 434 + 81552678 -CCCAGGTGCCTTTCCTCAGTCAGCAGCACCCCC-----------------------------------------------------AGAAAGGAGAGAGATGGTCCAGGGCTGTGTCCTGG------TCCCAGTTGTGTGTGA---GAGGCTTCTCCTGCCA------CCCGT-----GG-GAGCATT---------------------GTGTCCTGTGAGCAGCCTTTACTTACCCTGGGCTCTCCCTCGGC-CTGCGGTGCAGCCACCGAAACAGCACCGAGGCCCGCGGACTGTG--AGTTTTCTCTGCACTGGTGGGATGACTAG-----TTTGTCCCCATA-CAATA---GACTTGGTAACTTCAGGCCT---------------------TTCCCTGGGG--------------CCCCCG--AACCGTGCTGACTCCTGAGGCTTATGAAAGCTGGCTCGCCC-------AGTAT--CTGGGCTTGATACCAG-CTGTGAGATTGCTCCCTGCTCAGGGCAGGTCATTGGCACATCTCTTCTGTCCCCAGGCCACA-CAAAAGCACCTGTTCTCC-CTCCCCTC- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3263661 435 + 108979918 -CCCAGGTGCCTTTCCTCAGTCAGCAGCACCCCC-----------------------------------------------------AGAAGGGAGAGAGATGGTCCAGGGCTGTGTCCTGG------TCCCCGCTGTGTGTGA---GAGGCTTCTCCTGCTG------CCCAT-----GGAGAGCATT---------------------GCGTCCTGTGAGCAGCCTTTACTTACCCTGGACTCTCCCTCAGC-CTGCGGTGCAGCCACCGAAACAGCACTGAGGCCCGCGGACTGGAACAGTTTTCTCTGCACTGTTGGGATGACTAG-----TTTGTCCCCATG-CAACA---GACTTGGTAACTTCACGCCC---------------------TTCCCTGGGG--------------CCCCCA--AACCGTGCTGACTCCTGAGGCTCATGAAGGCCAGCTCGCCC-------AGCAT--CTGGGCTTGACACCAG-CTATGAGATCGCTCCCTGCTCAGTGCAGGTCATTGGCACATCTCTTCTGTCCCCAGGCCACA-CAAAAGCACCGGT--TCC-CTCCCCTT- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4976751 435 - 111193037 -CCCAGGTGCCTTTCCTCAGTCAGCAGCACCCCC-----------------------------------------------------AGAAGGGAGAGAGATGGTCCAGGGCTGTGTCCTGG------TCCCCGCTGTGTGTGA---GAGGCTTCTCCTGCTG------CCCAT-----GGAGAGCATT---------------------GCGTCCTGTGAGCAGCCTTTACTTACCCTGGACTCTCCCTCAGC-CTGCGGTGCAGCCACCGAAACAGCACTGAGGCCCGCGGACTGGAACAGTTTTCTCTGCACTGTTGGGATGACTAG-----TTTGTCCCCATG-CAACA---GACTTGGTAACTTCACGCCC---------------------TTCCCTGGGG--------------CCCCCA--AACCGTGCTGACTCCTGAGGCTCATGAAGGCCAGCTCGCCC-------AGCAT--CTGGGCTTGACACCAG-CTATGAGATCGCTCCCTGCTCAGTGCAGGTCATTGGCACATCTCTTCTGTCCCCAGGCCACA-CAAAAGCACCGGT--TCC-CTCCCCTT- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3371758 435 + 3644372 -CCCAGGTGCCTTTCCTCAGTCAGCAGCACCCCC-----------------------------------------------------AGAAGGGAGAGAGATGGTCCAGGGCTGTGTCCTGG------TCCCCGCTGTGTGTGA---GAGGCTTCTCCTGCTG------CCCAT-----GGAGAGCATT---------------------GCGTCCTGTGAGCAGCCTTTACTTACCCTGGACTCTCCCTCAGC-CTGCGGTGCAGCCACCGAAACAGCACTGAGGCCCGCGGACTGGAACAGTTTTCTCTGCACTGTTGGGATGACTAG-----TTTGTCCCCATG-CAACA---GACTTGGTAACTTCACGCCC---------------------TTCCCTGGGG--------------CCCCCA--AACCGTGCTGACTCCTGAGGCTCATGAAGGCCAGCTCGCCC-------AGCAT--CTGGGCTTGACACCAG-CTATGAGATCGCTCCCTGCTCAGTGCAGGTCATTGGCACATCTCTTCTGTCCCCAGGCCACA-CAAAAGCACCGGT--TCC-CTCCCCTT- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3324680 432 - 10304083 -CCCAGGTGCCTTTCCTCAGTCAGCAGCACCCTC-----------------------------------------------------AGAAGGGAGAGAGATGGTCCAGGGCTGTGTCCCGG------TCCCCGCTGTGTGTGA---GAGGCTT---CTGCTG------CCCAT-----GGAGAGCATG---------------------GCGTCCTGTGAGCAGCCTTTACTTACCCTGGACTCTCCCTCAGC-CTGCGGTGCAGCCACCAAAACAGCACTGAGGCCCGCGGACTGTAACAGTTTTCTCTGCACTGTTGGGATGACTAG-----TTTGTCCCCATG-CAACA---GACTTGGTAACTTCACACCC---------------------TTCCCTGGGG--------------CCCCCA--AACCGTGCTGACTCCTGAGGCTCATGAAGGCCAGCTCACCC-------AGCAT--CTGGGCTTGACACCAG-CTATGAGATCGCTCCCTGCTCAGTGCAGATCATTGGCACATCTCTTCTGTCCCCAGGCCACA-CAAAAGCACCGGT--TCC-CTCCCCTT- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3408941 435 - 107702431 -CCCAGGTGCCTTTCCTCAGTCAGCAGCGCCCCC-----------------------------------------------------AGAAGGGAGAGAGATGGTCCAGGGCTGTGTCCTGG------TCCCCGCTGTGTGTGA---GAGGCTTCTCCTGCTG------CCCAT-----GGAGAGCATT---------------------GCGTCCTGTGAGCAGCCTTTACTTACCCTGGACTCTCCCTCAGC-CTGCGGTGCAGCCACCGAAACAGCACTGAGGCCCGCGGACTGTAACAGTTTTCTCTGCACTGTTGGGATGACTAG-----TTTGTCCCCATG-CAACA---GACTTGGTAACTTCACGCCC---------------------TTCCCTGGGG--------------CCCCCA--AACCGTGCTGACTCCTGAGGCGCATGAAGGCCAGCTCGCCC-------AGCAT--CTGGGCTTGACACCAG-CTATGAGATCGCTCCCTGCTCAGTGCAGGTCATTGGCACATCTCTTCTGTCCCCAGGCCACA-CAAAAGCACCAGT--TCC-CTCCCCTT- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 932290 432 + 1565135 -CCCAGGTGCCTTTCCTCAGTCAGCAGCACCCCC-----------------------------------------------------AGAAGGGAGAGAGATGGTCCAGGGCTGTGTCCCGG------TCCCCGCTGTGTGTGA---GAGGCTTCTC---CTG------CCCAT-----GGAGAGCATT---------------------GCGTCCTGTGAGCAGCCTTTACTTACCCTGGACTCTCCCTCAGC-CTGCGGTGCAGCCACCGAAACAGCACTGAGGCCCGCGGACTGTAACAGTTTTCTCTGCACTGTTGGGATGACTAG-----TTTGTCCCCATG-CAACA---GACTTGGTAACTTCACGCCC---------------------TTCCCTGAGG--------------CCCCCA--AACCGTGCTGACTCCTGAGGCTCATGAAGGCCAGCTCACCC-------AGCAT--CTGGGCTTGACACCAG-CTATGAGATCGCTCCCTGCTCAGTGCAGGTCATTGGCACATCTCTTCTGTCCCCAGGCCACA-CAAAAGCACCGGT--TCC-CTCCCCTT- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315379 435 - 13651311 -CCCGGGTGCCTTTCCTCAGTCAGCAGCACCCCC-----------------------------------------------------AGAAGGGAGAGAGATGGTCCAGGGCTGTGTCCTGG------TCCCCGCTGTGTGTGA---GAGGCTTCTCCTGCTG------CCCAT-----GGAGAGCATT---------------------GCGTCCTGTGAGCAGCGTTTACTTACCCTGGACTCCCCCTCAGC-CTGCGGTGCAGCCACCGAAACAGCACTGAGGCCCGCGGACTGTAACAGTTTTCTCTGCACTGTTGGGATGACTAG-----TTTGTCCCCAGG-CAACA---GACTCGGTAACTTCACGCCC---------------------TTCCCTGGGG--------------CCCCTG--AACCGTGCTGACTCCCGAGGCTCATGAAGGCCAGCTCGCCC-------AGCGT--CTGGGCTTGACACCAG-CTATGAGATCGCTCCCTGCTCAGTACAGCTCATTGACACACCTCTTCTGTCCCCAGGCCACA-CAAAAGCACCGGT--TCC-CTCCCCTT- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3401018 423 - 108792865 ------GTGCCTTTCCTCAGTCAGCAGCACCCCC-----------------------------------------------------AGAAGGGAGAAAGATAGTGCAGGGCTGTGTCCTGG------CCCCAGCTCTGTGTG----GAGGCGTGTCCTGCTG------CCCAG-----GGAGAGCATT-----------------------------------GCCTTTACTTACCCTGGGCTCTCCCTTGGC-CTGCGGTGCAGACACCGAAATGGCACTGAGGCCTGCGGACCAGGATGGTTTTCTCCTCGCTGTTGGGGTGACTAG-----TTTGTCCCCATA-CGACA---GCCTTGGTAACTTCAAGCCC---------------------TT-CCTGGGG--------------CCCCCG--AACTGTGCCAACCTCTGAGGCTCATGAAGGCCGGCTCGCCCTCTCACTGGCAG--CCTGGCTTCATGTGAG-CTACGAGATTGCTCCCGGCTCAGTGTGGGTCATCGGCACATCCCTTCTGTCTCCAGGCCACA-CAAGAGCACCTCTTCTCC-CTCCCCTT- i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3064069 481 - 7082604 -C-CAGGTGCCTTTCCTCAGTCAGCAGCACCCCCAGACCTCAGCACTGCTGCCCCCCAGGTGCCTTTCCTCAGTCAGCAGCACCCCTAGAAGGGAGAGGGAGAGTGCAGGGCTGTGTCCTGG------TCCCAGCTCTGTGTG----GAGGCCTCTCCTGCCG------CCCGT-----GGAGAGCATT-----------------------------------GCCTTTACTTACCCTGGGCTCTCCCTCGGC-CTGCGACGCAGACACCAAAACTGCACTGAGGCCCGCGGACCAGGACGGTTTTCTCCTCGCTGTTGGGATGAGGAG-----TTTGTCCCCATA-CGACA---GCCTTGGTAACTTCCAGCCC---------------------TTCCCTGGGG--------------TCCCCG--AGCTGTGCCGACCTCTGAGGCTCATGAAGGCCAGCTCACCCTCCCACTGGCAG--CCTGGCTTCCTGTGAG-CTACGAGATTGCTCCCGGCCCAGTGCGGGTCCTCGGCACATCCCTGCTGTCCCCAGGCCACA-CAAGAGGACCTCTTCTGC-CTCCCCTT- i saiBol1.JH378218 I 1 C 0 s cebCap1.NW_016107454v1 550307 427 + 5243153 ---CAGGTACCTTTCCTCAGTCAGCAGCACCCCC-----------------------------------------------------AGAAGGGAGAGAGAGAATGCAGGGCTGTGTCCTGG------TCCCAGCTCTGTGTG----AAGGCTTCTCCTGCTG------CCCAT-----GGAGACCACT-----------------------------------GCCTTTACTTACCCTGGGCTCTCCCTTGGC-CTGCGATGCAGACGCCAAAACTGCACTGAGGCCTGCGGACTAGGACAGTTTTCTCCTCGCTGTTGGGATGACTAG-----TTTGTCCCCATA-CAACA---GCCTTGGTAAATCCAAGCCA---------------------TTCCCTGGGG--------------CCCCCC--AGTTGTGCCGACCTCTGAGGCTGGTCAAGGCCAGCTTGCCCTCTCACTGGCAG--CCTGGCTTCATGCGAG-CTACGAGATTGCTCCCGGCTCAGTGCAGGTCATCGGCACATCCCTTCTGTCCCCAGGCCACA-CAAGAGCACGTCTTCTCC-CTCCCCTT- i cebCap1.NW_016107454v1 I 1 C 0 s aotNan1.NW_018507213v1 1883920 442 - 1938448 -CCCGGGTGCCTTTCCTCAGTCAGCAGCACCCCC-----------------------------------------------------AGAAGGGAGAGAGAGAGTGCAGGACTGTGTCCTGG------TCCCAGCTCTATGTG----GAGGCTTCTCCTGTCG------CCCAT-----GGACAGCATT-----------------------------------GCCTTTACTTACCTCGGGCTCTCCCTCAGC-CTGCGATACAGACACCAAAACTGCACTGAGGCCTGCGGACCAGGACGGTTTTCTCCTCGCTGTTGGGATGACTAG-----TTTGTCCCCATA-TGACA---GCCTTGGTAACTTTGAGCCC---------------------TTCCCTGGGGCCCCCAAGCTGTGCCCCCCG--AGCTGTGCCGACCTCTGAGGCTCATGAAGGCCGACTCGCCCTCTCACTGGCAG--CCTGGCTTCATGAGAG-CTACGAGATTGCTCCCGGCTCAGTGCAGGTCATCAGCACATCCCTTCTGCCCCCA-GCCACA-CAGGAGCACCTCTTCTCC-CTCCCCTT- i aotNan1.NW_018507213v1 I 4976 C 0 s otoGar3.GL873658 2490702 373 + 5252280 --CACAGTGCCTTTCCGTAGGTG---------CC-----------------------------------------------------AGTAGATAGAGAGAC-GTCCAGAGCTTTGTTCCATAACAACTCTTTGTCCTGGGCGGCCTGCGACTTCTCCTTCGGATGGGCCCCACAGCAGGGAGTGTGCTTCATGCTGACTGCTGGGGCAGGTGTCCAGTGAGCCGGCCTTGCT----CTGGACTCGC----AGC-CTGT---------------------------CCTGCAGGGTGTGATGGTGTTCTCAGCACTAGCGTGGTGACTGG-----CCTCT-TCCATA-CATCACTTAAGTTGGTAACGGCCGG---------------------------CTTGGAC--------------CACAGG--GATTCTGCTGAT------------TGTAAATATACTCACCT-------GGGGT------GCTTG----------------------------------------TTGTCACAAGTCCCAGGTCCCTCATCAAGAGCCTGACCCCTAGTGGGCC-TTCTCCC-- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 504311 419 + 2232271 GGCAGTGGGCCT-----------GCAGCACCTCA-----------------------------------------------------------GGGAGAGGTTCTTCA--------TCCTGA------T------------------AAGCCGGGATGTATTA------CAGCT-----ACAGAGCATT-----------------------------------TCCCTTACT--CCTAGGATTCTTCCTAGGCATTGTGGTACAGCCACC--AGCATCATGTCAACTTGTAGATCTTTATAGCTTTCTTAGCA-TGTTAGCATTATGAGACCCCTGTTTTCTTATGTCATTA---AAATTGGTAATTTCCAGCTCTGGCTTTTTTTTTTTTACCTTTTTCTTATAG--------------CCATGGAAAATTATGTTAGCTTATAAA--TGCTAAAGCCCAGATTTCTTTCTTTGGAACATTCCCATGTTTCACACCAGCCTCAGAGATTTTTCCCTGGACATTCCAGGTCATTGGTTCATGTCCTGTTTCCCTCATCCTCA-AAAAAGCACCCTTTTTCCTCTCCGCCTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2606252 966 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I a score=914223.000000 s hg38.chr2_KI270769v1_alt 9055 79 + 120616 GCCCTTCTGTGTCTTCCCTTTAAAGCAAGTGGCATGCTTCAGATTCC-ACGTCCAGTGTTCTTCAG---CACCGTCTAAAGAT s panTro5.chr2A 3446374 79 + 111504155 GCCCTTCTGTGTCTTCCCTTTAAAGTAAGTGGCATGCTTCAGATTCC-ACGTCCAGTGTTCTTCAG---CACTGTCTAAAGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3333130 79 + 114371477 GCCCTTCTGTGTCTTCCCTTTAAAGTAAGTGGCATGCTTCAGATTCC-ACGTCCAGTGTTCTTCAG---CACTGTCTAAAGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206766 79 + 637652 GCCCTTCTGTGTCTTCCCTTTAAAGTAAGTGGCATGCTTCAGATTCC-ACGTCCAGTGTTCTTCAG---CACCGTCTAAAGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3006224 79 + 81552678 GCCCTTCTGTGTCTTCCCTTTAAAGTAAGTGGCATGCTTCAGATTCC-ACTTTTAGTGTTCTTCAG---CACCGTCTAAAGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3264096 79 + 108979918 GCCTTTCTGTGTCTTCCCTTTAAAGTAAGTGGCATGCTTCAGATTCC-ACTTTCAGTGTTCTTCAG---CACCATCGAAAGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4977186 79 - 111193037 GCCTTTCTGTGTCTTCCCTTTAAAGTAAGTGGCATGCTTCAGATTCC-ACTTTCAGTGTTCTTCAG---CACCATCGAAAGAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3372193 79 + 3644372 GCCTTTCTGTGTCTTCCCTTTAAAGTAAGTGGCATGCTTCAGATTCC-ACTTTCAGTGTTCTTCAG---CACCATCGAAAGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3325112 79 - 10304083 GCCCTTCTGTGTCTTCCCTTTAAAGAAAGTGGCATGCTTCAGATTCC-ACTTTCAGTGTTCTTCAG---CACCATCGAAAGTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3409376 79 - 107702431 GCCCTTCTGTGTCTTCCCTTTAAAGTAAGTGGCATGCTTCAGATTCC-ACTTTCAGTGTTCTTCAG---CACCATCGAAAGAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 932722 79 + 1565135 GTCCTTCTGTGTCTTCCCTTTAAAGTAAGTGACATGCTTCAGATTCC-ACTTTCAGTGTTCTTCAG---CACCATCGAAAGAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3315814 78 - 13651311 GCCCTTCTGTGTCTTCCCTTTAAAGTAAGCGGCATGCTTCAGATTCC-ACTTTCAGTGTTCTTCAG---CACCGTC-AAAGAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3401441 81 - 108792865 GCCC-TCTATGTCTTCCCTTTAAAGTAAGTAGCATGCTTCAGATTCC-ACTTTGAGTGTTCTTCAGCGCCGCCGTCTAAAGAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3064550 78 - 7082604 GCCC-TCTGTGGCTTCCCTTTAAAGTAAGTAGCATGCTTCAGGTTCC-ACTTTCAATGTTCTTCAG---CGCCGTCTAAAGAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 550734 77 + 5243153 GCCC-TCTA-GTCTTCCCTTTAAAGTAAATAGCATGCTTCAGATTCC-ACTTTCAGTGTTCTTCAG---CACCGTCTAAAGAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1884362 78 - 1938448 GCCC-TCTATGTCTTCCCTTTAAAGTAAGTAGCATGCTTCAGATTCC-ACTTTCAGTGTTCTTCAG---CGCCGTCTAAAGAT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2607218 75 - 159902609 GCCCTTCTATGTCTTCCCTTTAAAGTAA----CGTGCTTCAGACTCC-ACTTGCAGTGTTCTTTAT---CACGGTCTAAAGAT i micMur3.chr8 I 966 I 496 s otoGar3.GL873658 2491075 55 + 5252280 AGACTTCTTTGTCCCCCCTTTAAAGTGA----CATGCTTCAGATTTCAACCTGC------------------------AAGAT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 504730 75 + 2232271 GCCTCTCTACTTCTTCCTTTTAAATTAA----CATGTTTCAAATTCC-ACTTTTAATGTTCTTAAG---CCCTGACTATAAAT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I a score=1577476.000000 s hg38.chr2_KI270769v1_alt 9134 159 + 120616 CGTTCTAATCAGAGGAGTCAGGTCAGGA-GTAGAAACGGTCCC-GTGCAGAGGCAA--CTG--GATTCTTCCCTGGCTTGCAGCATGAAGTGCGCCCAGC--AGCTCCTG-GAGC---AAGGCCTGGCTCAGCGAGGCTACCGAGGACCTGCTGTGA-AAGGG--GGTCTCAGT s panTro5.chr2A 3446453 159 + 111504155 CGTTCTAATCAGAGGAGTCAGGTCAGGA-GTAGAAACGGTCCC-GTGCAGAGGCAA--CTG--GATTCTTCCCTGGCTTGCAGCATGAAGTGCGCCCAGC--AGCTCCTG-GAGC---AAGGCCTGGCTCAGCGAGGCTACCGAGGACCTGCTGTGA-AAGGG--GGTCTCAGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3333209 159 + 114371477 CGTTCTAATCAGAGGAGTCAGGTCAGGA-GTAGAAACGGTCCC-GTGCAGAGGCAA--CTG--GATTCTTCCCTGGCTTGCAGCATGAAGTGCGCCCAGC--AGCTCCTG-GAGC---AAGGCCTGGCTCAGCGAGGCTACCGAGGACCTGCTGTGA-AAGGG--GGTCTCAGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 206845 159 + 637652 CGTTCTAATCAGAGGAGTCAGGTCAGGA-GTAGAAACGGTCCC-GTGCAGAGGCAA--CTG--GATTCTTCCCTGGCTTGCAGCATGAAGTGCGCCCAGC--AGCTCCTG-GAGC---AAGGCCTGGCTCAGCGAGGCTACCGAGGACCTGCTGTGA-AAGGG--GGTTTCAGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3006303 159 + 81552678 CGGTCTAATCAGAGGAGTCAGGTCAGGA-GTAGAAACGGTCCC-GTGCAGAGGCAA--CTG--GATTCTTCCCTGGCTTGCAGCATGAAGTGCGCCCAGC--AGCTCCTG-GAGC---AGGGCCTGGCTCAGCGAGGCTGTTGAGGACCTGCTGTGA-AAGGG--GGTCTCAGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3264175 160 + 108979918 CAGTATAATCAGAGGAGTTGGGTCAGGAGGTAGAAACAGTCCC-GTGCAGAGGCAA--CTG--GATTCTTCCCTGGCTTGCAGCATGAAGTGAGCCCACC--AGCTCCTG-GAGC---AACGCTTGGCTCAGCGAGGCTATTGAGGACCTGCTGTGA-AAGGG--GGTCTCAGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4977265 151 - 111193037 CAGTATAATCAGAGGAGTTGGGTCAGGAGGTAGAAACAGTCCC-GTGCAGAGGCAA--CTG--GATTCTTCCCTGGCTTGCAGCATGAAGTGAGCCCACC--AGCTCCTG-GAGC---AGCGCTTGGCTCAGCGAGGCTATCGAGGACCTGCTGTGA-AAGGG----------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3372272 160 + 3644372 CAGTATAATCAGAGGAGTTGGGTCAGGAGGTAGAAACAGTCCC-GTGCAGAGGCAA--CTG--GATTCTTCCCTGGCTTGCAGCATGAAGTGAGCCCACC--AGCTCCTG-GAGC---AGCGCTTGGCTCAGCGAGGCTATCGAGGACCTGCTGTGA-AAGGG--GGTCTCAGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3325191 160 - 10304083 CAGTATAATCAGAGGAGTTGGGTCAGGAGGTAGAAACAGTCCC-GTGCAGAGGCAA--CTG--GATTCTTCCCTGGCTCGCAGCATGAAGTGAGCCCACC--AGCTCCTG-GAGC---AGGGCTTGGCTCAGCGAGGCTATTGAGGACCTGCTGTGA-AAGGG--GGTCTCAGT i cerAty1.NW_012000820v1 C 0 I 10 s chlSab2.chr14 3409455 160 - 107702431 CAGTATAATCAGAGGAGTTGGGTCAGGAGGTAGAAACAGTCCC-GTGCAGAGGCAA--CTG--GATTCTTCCCTGGCTTGCAGCATGAAGTGAGCCCACC--AGCTCCTG-GAGC---AGGGCTTGGCTCAGCGAGGCTATCGAGGACCTGCTGTGA-AAGGG--GGTCTCAGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 932801 160 + 1565135 CAGTATAATCAGAGGAGTTGGGTCAGGAGGTAGAAACAGTCCC-GTGCAGAGGCAA--CTG--GATTCTTCCCTGGCTCGCAGCATGAAGTGAGCCCACC--AGCTCCTG-GAGC---AGCGCTTGGCTCAGCAAGGCTATCAAGGACCTGCTGTGA-AAGGG--GGTCTCAGT i manLeu1.NW_012104432v1 C 0 I 10 s colAng1.NW_012118821v1 3315892 160 - 13651311 CAGTATAATCAGAGGAGTTGGGTCAGGAGGCAGAAACAGTCCC-GTGCAGAGGCAA--CTG--GATTCTTCCCTGGCTTGCAGCATGAAGTGAGCCCACC--AGCTCCTG-GAGC---AGGGCTTGGCTCAGTGAGGCTATGGAGGACCTGCTGTGA-AAGGG--GGTCTCAGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3401522 159 - 108792865 CAGTGT-ATCAGAGGAGGCAGGTCAGGAGACAGAAGCGGTCCT-ATGCAGAGATGA--CTG--GATTCTTCCCCGGCTTGCAGCATGAGGTGCGCCTACC--AGCTCCTG-GAGC---AGGGCATGGCTCAGCGAGGCTCTCAGGGACCTGCTGCTA-AAGGG--GGTCTCGGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3064628 159 - 7082604 CAGTGT-ATCAGAGGAGTCAGGTCAGGGGACAGAAACGGTCCC-ATGCAGAGGTGA--CTG--GATTCTTCCCCGGCTTGCAGCAGGAAGTGCGCCTACT--GGCTCCTG-GAGC---AGGGCCTGGCTCAGCGAGGCCGTCAGGGACCTGCTGCTA-AAGGG--GGTCTCGGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 550811 159 + 5243153 CAGTGT-ATCAGAGGAGTCTGGTCAGGAGACAGAAACGGTCCC-ACACAGAGGGGA--CTG--GATTCTTCCCCAGCTTGCAGCATGAGGCACACCTACC--AGCTCCTA-CAGC---GGGGCCTGACTCAGCGAGGCTGTCAGAGACCTGCTGCTA-AAGAG--GGTCTCAGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1884440 159 - 1938448 CAGTGT-ATCAGAGCAGTCAGGTCAGGAGACAGAAACGGTCTC-ATGCAGAGGTGA--CTG--GATTCTTCCCCGGCTTGCAGCATGAGGTGCGCCTACC--AGCTCCTG-GAGC---AGGGCCTGACTCAGCGAGGCTGTCAGGGACCTGCTGCTA-AAGGG--GGTCTCGGT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2491130 148 + 5252280 GGTGGCCATCTGAGCAGTCA-GCCAGGAGATGGAACTTGCCTCAGTGCCAGGGTGA--ATGCAGACCCCTCCCTGGCCTGCAGCATAAAGCG---CCCCC--TGCTCCTGTGAGC---AGAGAC-------------CTAAGGAAGAGCAGCTGGAAGAAGGG--AGGCTCCAT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 504805 170 + 2232271 CAGTATAATCTGAGAAGCCAGGTAACAAAATAGATATTTCCCTAGTACAGAGGTTAATTTG--GACCCTTCCCTGGTGTGCAGCTTAAAATGTGCCCCTCTTTTCTCTTG-GAGCTAGAAGAAGTGGGTGAGCAAGGTTCTAAAGTGCTTACTCAGA-AAAGAGAGGCTTCTGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2607293 496 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I a score=29291.000000 s hg38.chr2_KI270769v1_alt 9293 4 + 120616 TTTC s panTro5.chr2A 3446612 4 + 111504155 TTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3333368 4 + 114371477 TTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 207004 4 + 637652 TTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3006462 4 + 81552678 TTTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3264335 4 + 108979918 TTTC i rheMac8.chr13 C 0 I 6 s macNem1.NW_012011978v1 3372432 4 + 3644372 TTTC i macNem1.NW_012011978v1 C 0 I 6 s chlSab2.chr14 3409615 4 - 107702431 TTTC i chlSab2.chr14 C 0 I 6 s colAng1.NW_012118821v1 3316052 4 - 13651311 TTTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3401681 4 - 108792865 TTTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3064787 4 - 7082604 TCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 550970 4 + 5243153 TCTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1884599 4 - 1938448 TTTC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2491278 4 + 5252280 TGTC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 504975 4 + 2232271 TGTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2607293 496 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e manLeu1.NW_012104432v1 932961 10 + 1565135 I e cerAty1.NW_012000820v1 3325351 10 - 10304083 I e macFas5.chr13 4977416 0 - 111193037 C a score=385536.000000 s hg38.chr2_KI270769v1_alt 9297 109 + 120616 CTTTGGCTTGGCTGGTGACCTCAGCACTGAAGAGA--------------GGGCCATTGGTAATTT-AACTTCTTTAGCCCTAGCCCTCCAGGCTTTCC-TGGAGGTCCAGGCAAGCATGGAGGCA s panTro5.chr2A 3446616 109 + 111504155 CTTTGGCTTGGCTGGTGACCTCAGCACTGAAGAGA--------------GGGCCATTGGTAATTT-AACTTCTTTAGCCCTAGCCCTCCAGGCTTTCC-TGGAGGTCCAGGCAAGCATGGAGGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3333372 109 + 114371477 CTTTGGCTTGGCTGGTGACCTCAGCACTGAAGAGA--------------GGGCCATTGGTAATTT-AACTTCTTTAGCCCTAGCCCTCCAGGCTTTCC-TGGAGGTCCAGGCAAGCATGGAGGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 207008 109 + 637652 CGTTGGCTTGGCTGGTGACCTCAGCACTGAAGAGA--------------GGGCCATTGGTAATTT-AACTTCTTTAGCCCTAGCCCTCCAGGCTTTCC-TGGAGGTCCAGGCAAGCATGGGGGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3006466 109 + 81552678 CTTTGGCTTGGCTGGTGACCTCAGCACTGAAGAGA--------------GGGCCATTGGTAATTT-AACTTCTTCAGCCCTAGCCCTCCAGGCTTTCC-TGGAGGTCCAGGCAAGCATGGGGGCA i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 4977416 19 - 111193037 ----------------GGTCTCAG---------------------------------------------------------------------TTTTC---------------------AGGGCC i macFas5.chr13 C 0 C 0 s colAng1.NW_012118821v1 3316056 109 - 13651311 CTTTGGCTTGGCTGGTGACCTCAGCACTGAAGAGA--------------AGGCCGTTGGTAATTT-GACTTCTTTACCCCTAGCCCTCACGGCTTTCC-TGGAGGTCCAGGCAAGCATGGGGGCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3401685 109 - 108792865 CTTTGGCTCGGCTGGTGACACCAGCACTGAAGAGA--------------GGGCCACTGGTCATGT-CAGTTCTTTAGCCCTAGCCCTCACAGCTTTCC-TGGAGGTCCAGGCAAGCACAGGGACA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3064791 109 - 7082604 CTTTGGCTTGGCCGGTGACCTCAGCGCTGAAGAGA--------------GGGCGGCTGGAGATGT-CACTTCTTTAGCCCTAGCCCTCACGGCTTTCC-TGGAGGTCCAGGCAAGCATGGGGACA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 550974 109 + 5243153 CTTTGGCTTGGCCGGTGACCTCAGCGCTGAAGAGA--------------GGGCCGCTGGTGATGT-GACTTCTTTAGCCCTAGCCCTCACGGTTTTCC-AGGAGGTCCAGGCAAGCCCGGGGAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1884603 109 - 1938448 CTTTGGCTTGGCTGGTGACCTCAGCGCTGAAGAGA--------------GGGCCTCTGGTGATGT-CACTTCTTTAGCCCTAGCCCTCACGGCTTTCC-TGGAGGTCCAGGCAAGCACGGGGACA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2491282 114 + 5252280 -CTCCGTCTGACCAGCAAACCTAGTGTGGAGGGGG-------CCCCTTCGTGCCACTGGTAACCT--GCCTCTCCAGCCCTGGGGCTGAAGCCTCTCC-TGGAAGCCCCAGCAGCCACAGTGAGC i otoGar3.GL873658 C 0 I 3 s dasNov3.JH580157 504979 121 + 2232271 CTTTGATTTGGGGAATGAATTTA---TTTAAAAGAAAGCTGGCATTTCAGTGCTGTTACTAGCTTAAAATTTTTAAACTCTGGGCCCTAAAGCTTTTCATAGAGGCCCAGGCAACCTTGGTGAA- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2607293 496 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e manLeu1.NW_012104432v1 932961 10 + 1565135 I e chlSab2.chr14 3409619 6 - 107702431 I e cerAty1.NW_012000820v1 3325351 10 - 10304083 I e macNem1.NW_012011978v1 3372436 6 + 3644372 I e rheMac8.chr13 3264339 6 + 108979918 I a score=2543465.000000 s hg38.chr2_KI270769v1_alt 9406 260 + 120616 TTGATGAGATTTGGGAAGA----CTATTCAGGCCTGCCTGCACCAGCGCGAGGCTGG----CCACTGTG-GGTGCAGCCCCTGGTCCCCAGC----------------------------AGTGTCACCTTCATGCTCCTGGGCCTCCCTAGGCCCCTCACCTGAGGCCTCTCTGCTGGCTTGGCTTTGCCTCTCACTACAAGCCTGGTAGTAGGCGGTAGG--ACTTACCGTTTCCTCTTCAGAATAAAGAACATGCTTTCTGATCAGTGGTgaataaagatataa-tttttaaaataa s panTro5.chr2A 3446725 260 + 111504155 TTGATGAGATTTGGGAAGA----CTATTCAGGCCTGCCTGCACCAGCGCGAGGCTGG----CCACTGTG-GGTGCAGCCCCTGGTCCCCAGC----------------------------AGTGTCACCTTCATGCTCCTGGGCCTCCCTAGGCCCCTCACCTGAGGCCTCTCTGCTGGCTTGGCTTTGCCTCTCACTACAAGCCTGGTAGTAGGCGGTAGG--ACTTACCGTTTCCTCTTCAGAATAAAGAACATGCTTTCTGATCAGTGGTgaataaagatataa-tttttaaaataa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3333481 260 + 114371477 TTGATGAGATTTGGGAAGA----CTATTCAGGCCTGCCTGCACCAGCGCGAGGCTGG----CCACTGTG-GGTGCAGCCCCTGGTCCCCAGC----------------------------AGTGTCACCTTCATGTTCCTGGGCCTCCCTAGGCCCCTCACCTGAGGCCTCTCTGCTGGCTTGGCTTTGCCTCTCACTACAAGCCTGGTAGTAGGCGGTAGG--ACTTACCGTTTCCTCTTCAGAATAAAGAACATGCTTTCTGATCAGTGGTgaataaagatataa-tttttaaaataa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 207117 260 + 637652 TTGATGAAATTTGGGAAGA----CTATTCAGGCCTGCCTGCACCAGCGCGAGGCTGG----CCACTGTG-GGTGCAGCCCCTGGTCCCCAGC----------------------------AGTGTCACCTTCATGCTCCTGGGCCTCCCTAGGCCACTCACCTGAGGCCTCTCTGCTGGCTTGGCTTTGCTTCTCACTACAAGCCTGGTAGTAGGCGGTAGG--ACTTACCGTTTCCTCTTCAGAATAAAGAACATGCTTTCTGATCAGTGGTgaataaagatataa-tttttaaaataa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3006575 261 + 81552678 TTGATGGGATTTGGGAAGA----CTATTCAGGCCTGCCTGCACCAGCGCGAGGCTGG----CCACTGTGTGGTGCAGCCCCTGGTCCCCAGC----------------------------GGTGTCACCTTCAGGCTCCTGGACCTCCCTAGGCCCCTCACCTGAGGCCTCTCTGCTGGCTTGGCTTTGCCTCTCACTGCAAGCCTGGTGGGAGGCAGTAGG--ACTTAGCGTTTCCTCTTCAGAATAAAGAACATGCTTTCTGATCAGTGGTgaataaagatataa-tttttaaaacaa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3264345 261 + 108979918 TTGATGGAATTTGGGAAGA----CTATTCAGGCCTGCCTGCACCAGCGCAAGTCTGG----CCACTGTGTGGTGCAGCCCCTGGTCCCCAGC----------------------------AGTGTCACCTTCGTTCTCCTAGGCCTCCTTAGGCCCCTCACCTGAGGCCCCTCTGCTGGCTTGGCTTTGCCTCTCACTGCAAGCCTGGTGGTAGGTGGCAGG--ATTTACCATTTCCTCTCTAGAATAAAGAACATGCTTTCCAATCAGTGGTGAATAAAGATATAA-TTTTAAAAATAA i rheMac8.chr13 I 6 C 0 s macFas5.chr13 4977435 261 - 111193037 TTGATGGAATTTGGGAAGA----CTATTCAGGCCTGCCTGCACCAGCGCAAGTCTGG----CCACTGTGTGGTGCAGCCCCTGGTCCCCAGC----------------------------AGTGTCACCTTCGTTCTCCTGGGCCTCCTTAGGCCCCTCACCTGAGGCCCCTCTGCTGGCTTGGCTTTGCCTCTCACTGCAAGCCTGGTGGTAGGTGGCAGG--ATTTACCATTTCCTCTTTAGAATAAAGAACATGCTTTCCAATCAGTGGTGAATAAAGATATAA-TTTTAAAAATAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3372442 261 + 3644372 TTGATGGAATTTGGGAAGA----CTATTCAGGCCTGCCTGCACCAGCGCAAGTCTGG----CCACTGTGTGGTGCAGCCCCTGGTCCCCAGC----------------------------AGTGTCACCTTCGTTCTCCTGGGCCTCCTTAGGCCCCTCACCTGAGGCCCCTCTGCTGGCTTGGCTTTGCCTCTCACTGCAAGCCTCGTGGTAGGTGGCAGG--ATTTACCATTTCCTCTTTAGAATAAAGAACATGCTTTCCAATCAGTGGTGAATAAAGATATAA-TTTTAAAAATAA i macNem1.NW_012011978v1 I 6 C 0 s cerAty1.NW_012000820v1 3325361 261 - 10304083 TTGATGGAATTTGGGAGGA----CTATTCAGGCCTGCCTGCACCAGCGCAAGTCTGG----CCACTGTGTGGTGCAGCCCCTGGTCCCCAGC----------------------------AGTGTCACCTTCGTTCTCCTGGGCCTCCTTAGGCCCCTCACCTGAGACCCCTCTGCTGGCTTGGCTTTGCCTCTCACTGCAAGCCTGGTGGTAGGTGGCAGG--ATTTACCGTTTCCTCTTCAGAATAAAGAACATGCTTTCTGATCAGTGGTGAATAAAGATATAA-TTTTAAAAATAA i cerAty1.NW_012000820v1 I 10 C 0 s chlSab2.chr14 3409625 261 - 107702431 TTGATGGGATTTGGGAAGA----CTATTCAGGCCTGCCTGCACCAGCGCAAGTCTGG----CCACTGTGTGGTGCAGCCCCTGGTCCCCAGC----------------------------AGTGTCACCTTCATTCTCCTGGGCCTCCCTAGGCCCCTCACCTGAGGCCCCTCTGCTGGCTTGGCTTTGCCTCTCACTGCAAGCCTGGTGGTAGGTGGCAGG--ATTTACCGTTTCCTCTTTAGAATAAAGAACATGCTTTCCGATCAGTAGTGAATAAAGATATAA-TTTTAAAAATAA i chlSab2.chr14 I 6 C 0 s manLeu1.NW_012104432v1 932971 261 + 1565135 TTGATGGAATTTGGGAAGA----CTATTCAGGCCTGCCTGCACCAGCGCAAGTCTGG----CCACTGTGTGGTGCAGCCCCTGGTCCCCAGC----------------------------AGTGTCACCTTTGTTCTCCTGGGCCTCCTTAGGCCCCTCACCTGAGGCCCCTCTGCTGGCTTGGCTTTGCCTCTCACTGCAAGCCTGGTGGTAGGTGGCAGG--ATTTACCGTTTCCTCTTCAGAATAAAGAACATGCTTTCCGATCAGTGGTGAATAAAGATACAA-TTTTAAAAATAA i manLeu1.NW_012104432v1 I 10 C 0 s colAng1.NW_012118821v1 3316165 260 - 13651311 TTGATGGGATTTGGGAAGA----CTATTGAGGCCTGCCTGCACCAGCGTGAGTCTGG----CCACCGTGTGGTGCAGCCCCTGGTCCCCAGC----------------------------AGTGTCACCTTCATTCTCCTGGGCTTCCCTGGGCCCCTCACCTGAGGCCCCTCTGCTGGCTTGGCTTTGCCTCTCACTGCAAGCCT-GTGGTAGGTGGCAGG--ATATACCGTTTCCTCTTCAGAATAAAGAACATGCTTTCCGATCAGTGGTGAATAAAAATGTAA-TTTTAAAAATAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3401794 243 - 108792865 TTGAAGGGATTTGGGAAGA----CGATTCAGGCCTGCCT----------------GG----CCACTGCGTGGTGCAGCCCCTGGTCCCCAGC----------------------------AGTGCCACCTTCACACTCCTGGGCCTCCCCGGGCCCCTCACCGTAGGC--CCCCGCTGGCTTGGCTTTGCCTCTCGCTGCAGGCCTGGTA-CGGGTGGTGGG--ATTTACCATTTCCTCTTCAGAATAAAGAGCTCACTTTCTGATCAGTGGttaataaagaaataatttttaaaaataa i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3064900 250 - 7082604 TTGAAGGGATTTGGGAAGA----CGATTCAGGCCTGCCTGCACCAGCACAAGCCCGG----CCACTGCGTGGTGCAGCCCCTGGT---CAGC----------------------------AGTGCCACCTTCACACTCCTGGG-CTCCCCGGGCCCCTCCCCTCAGGC--CTCTGCTGGCGTGGCTTTGCTTCTCGCTGCAGGCCTGGTA-CAGGT-GTGGG--AGTTACCATTTCCTCTTCAAAATAAAGAGCATGCTTTCTGATCGGTGGT---TAAAGaaataa-ttttaaaaataa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 551083 257 + 5243153 TTGAAAGGATATAGGAAGA----TGATTCAGGCCTGCCTCCACCAGCACAAGCCTGA----CCACTGCGTGATGCAGCCCCTGGTCCCCAGC----------------------------AGTGCCACCTTCACACTCCTGGGCCTCCCCAGGCCCCTCACCTCAGGC--CTCTGCTGGCCTGGCTCTGCCTCTCGCTGCAGGCCTCGTA-CAGGT-GTAGG--ATTTACCATTTCCTCTTCAGAATAAAGAGCATGCTTTCTGATCAGTGGTTAATAAAGAAATAA-TTTAAAAAATAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1884712 258 - 1938448 TTGAAGGGATTTGGGAAGA----CGATTCAGGCCTGCCTGCAGCAGCGCAAGCCTGA----CCACTGCGTGGTGCAGCCCCTGGTCCCCAGC----------------------------AGTGCCACCTTCACACTCCTGGGCCTCCCTGGGCCCCTCACCTCGGGT--CTCTGCTGGCTTGGCTTTGCATCTCactgcaggcctggta-caggtggtaag--atttaccatttcctcttcaaaataaagagcatgctttCTGATCAGTGGTTaataaagaaataa-ttttaaaaataa i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2491399 211 + 5252280 CTGACGGGGCTCAGGCACA----CTGTCCAGGTGTGCCTGCCCCAGCATGGGCCCAGTGGTCTTCCCAGCAACAGGGGCTCCTGTCCCTCGC----------------------------AGTGTCACC-TCTCACTCCCAGGCCTCCCAAAGCCCTTC-CCTGCAGCCCCT---CTGGCTTGGTTTGGGGTCTCACTGTTAAC----TGGTAGAGGGGAGGTAATTTACCATTTCTTCTTCAAAATGAAGA------------------------------------------------ i otoGar3.GL873658 I 3 C 0 s dasNov3.JH580157 505100 234 + 2232271 TTGATGGGATTTGAGCAGAGCTGCTGTTCCAGCTTGACTGCTCCAACATGAGCCCAA----AC---------CACAGCATTTTATTCCTAGTCAATTACTATGTGTCCTTTATTAATGCAAATGTCA-CTTCAAGCTCATGGG--GCCCTAAGGCCATCACCGTAAGCCATTCTACTGACTTAGTTTTGCCTCTTATGTTAAGCCTGGTA-AAGCTGGTGATT-ATTTACCATTTCCTCTTCAAAATAAAGA------------------------------------------------ i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2607293 496 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e canFam3.chr17 2007842 1238 + 64289059 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I a score=48776.000000 s hg38.chr2_KI270769v1_alt 9666 4 + 120616 aaag s panTro5.chr2A 3446985 4 + 111504155 aaag i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3333741 4 + 114371477 aaag i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 207377 4 + 637652 aaag i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3006836 4 + 81552678 aaag i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3264606 4 + 108979918 AAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4977696 4 - 111193037 AAAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3372703 4 + 3644372 AAAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3325622 4 - 10304083 AAAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3409886 4 - 107702431 AAAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 933232 4 + 1565135 AAAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3316425 4 - 13651311 AAAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402037 4 - 108792865 GAAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065150 4 - 7082604 aaaG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 551340 4 + 5243153 AAAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1884970 4 - 1938448 aaag i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2009080 4 + 64289059 AAAG i canFam3.chr17 I 1238 C 0 e micMur3.chr8 2607293 496 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e proCoq1.NW_012151163v1 917445 1473 + 1238772 I e dasNov3.JH580157 505334 0 + 2232271 C e otoGar3.GL873658 2491610 0 + 5252280 C a score=38284.000000 s hg38.chr2_KI270769v1_alt 9670 3 + 120616 aat s panTro5.chr2A 3446989 3 + 111504155 aat i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3333745 3 + 114371477 aat i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 207381 3 + 637652 aat i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3006840 3 + 81552678 aat i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3264610 3 + 108979918 AAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4977700 3 - 111193037 AAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3372707 3 + 3644372 AAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3325626 3 - 10304083 AAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3409890 3 - 107702431 AAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 933236 3 + 1565135 AAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3316429 3 - 13651311 AAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402041 3 - 108792865 AAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065154 3 - 7082604 AAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 551344 3 + 5243153 AAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1884974 3 - 1938448 aat i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 918918 3 + 1238772 AAT i proCoq1.NW_012151163v1 I 1473 C 0 s canFam3.chr17 2009084 3 + 64289059 AAG i canFam3.chr17 C 0 C 0 e micMur3.chr8 2607293 496 - 159902609 I e mm10.chr12 91390329 798 - 120129022 I e dasNov3.JH580157 505334 0 + 2232271 C e otoGar3.GL873658 2491610 0 + 5252280 C a score=2448236.000000 s hg38.chr2_KI270769v1_alt 9673 160 + 120616 aaagaGCAATTCTAAAATTATGCATTTTATTAACGATTGTGCTAATT--TAGCTTCTGGTTAATTGAAGTTTTACGATACTATAACCGTTA-CTTTTACCTCCACAAGCCAGTGGAGAAAAAAGAAATTGTGTTTAGTTATGGGTTCTGGTTAGCTGAGTTTA s panTro5.chr2A 3446992 160 + 111504155 aaagaGCAATTCTAAAATTATGCATTTTATTAACGATTGTGGTAATT--TAGCTTCTGGTTAATTGAAGTTTTACGATACTATAACCGTTA-CTTTTACCTCCACAAGCCAGTGGAGAAAAAAGAAATTGTGTTTAGTTATGGGTTCTGGTTAGCTGAGTTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3333748 160 + 114371477 aaagaGCAATTCTAAAATTATGCATTTTATTAACGATTGTGGTAATT--TAGCTTCTGGTTAATTGAAGTTTTACGATACTATAACCGTTA-CTTTTACCTCCACAAGCCAGTGGAGAAAAAAGAAATTGTGTTTAGTTATGGGTTCTGGTTAGCTGAGTTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 207384 160 + 637652 aaagaGCAATTCTAAAGTTATGCATTTTAGTAACGATTGTGGTAATT--TAGCTTCTGGTTAATTGAAGTTTTACGATACTATAACCGTTA-CTTTTACCTCCATAAGCCAGTGGAGAAAAAAGAAATTGTGTTTAGTTATGGGTTCTGGTTAGCTGAGTTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3006843 160 + 81552678 aaagaGCAATTCTAAAATTATGCATTTTATTAACGATTATGGTAATT--TAGCTTCTGGTTAATTGAAGTTTTATGATACTGTAACCGTTA-CTTTTACCTCCATAAGCCAGTGGAGAAAAAAGAAATTGTGTTTAGTTATGGGTTCTGGTTAGCTGAGTTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3264613 160 + 108979918 AAGGAGCAATTCTAAAATTATGCATTTTATTAACAATTGTGGTAATT--TAGCTTCTGGTTAATTGAAGTTTTACGATACTATAACCGTTA-CTTTTATCTCCATAAGCCACTGGAGAAAAAAGAAATTTTGTTTAGTTATGGGTTCTGGTTAGCTGAGTTTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4977703 160 - 111193037 AAGGAGCAATTCTAAAATTATGCATTTTATTAACAATTGTGGTAATT--TAGCTTCTGGTTAATTGAAGTTTTACGATACTATAACCGTTA-CTTTTACCTCCATAAGCCACTGGAGAAAAAAGAAATTTTGTTTAGTTATGGGTTCTGGTTAGCTGAGTTTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3372710 160 + 3644372 AAGGAGCAATTCTAAAATTATGCATTTTATTAACAATTGTGGTAATT--TAGCTTCTGGTTAATTGAAGTTTTACGATACTATAACCGTTA-CTTTTACCTCCATAAGCCACTGGAGAAAAAAGAAATTTTGTTTAGTTATGGGTTCTGGTTAGCTGAGTTTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3325629 160 - 10304083 AAGGAGCAATTCTAAAATTATGCATTTTATTAACAATTGTGGTAATT--TAGCTTCTGGTTAATTGAAGTTTTACGATACTATAACCGTTA-CTTTTACCTCCATAAGCCACTGGAGAAAAAAGAAATTTTGTTTAGTTATGGGTTCTGGTTAGCTGAGTTTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3409893 160 - 107702431 AAGGAGCAATTCTAAAATTATACATTTTATTAACAATTGTGGTGATT--TAGCTTCTGGTTAATTGAAGTTTTACGATACTATAACCGTTA-CTTTTACCTCCATAAGCCACTGGAGAAAAAAGAAATTTTGTTTAGTTATGGGTTCTGGTTAGCTGAGTTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 933239 160 + 1565135 AAGGAACAATTCTAAAATTATGCATTTTATTAACAATTGTGATAATT--TAGCTTCTGGTTAATTGAAGTTTTACGATACTATAACCGTTA-CTTTTACCTCCATAAGCCACTGGAGAAAAAAGAAATTTTGTTTAGTTATGGGTTCTGGTTAGCTGAGTTTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3316432 160 - 13651311 AAGGAGCAATTCTAAAATTACGCATTTTATTAACAATTGTGGTAATT--TAGCTTCTGGTTAATTGAAGTTTTACGCTACGATAACCATTA-CTTTTACCTCCGTAAGCCACTGGAGAAAAAAGAAACTTTGTTTAGTTATGCGTTCTGGTTAGCTGAGTTTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402044 155 - 108792865 AAAGAGCAATTATAAAATTACACATTTTATTGCTGATTGTGGTAATT--TAGCTTCTGGTTAATTGAAGTTTTATG-----GTAACCATTA-CTTTTACCTCCATAAGCCAGTGGAGAAAAAAGAAATTTTGTTTAGTTACATGTTCTGGTTAGCTGAGTTTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065157 155 - 7082604 AAAGAGCAATTCTAAAAGTACACATTTTATTGACAATTGTGGTAATT--TAGCTTCTGGTTAATTGAAGTTTTACG-----GTAACCATGA-CTTTTACCTGCATAAGCCAGTGGAGAAAAAAGAAATTTTGTTTTGTTATGGGTTCTGGTTAGCTGAGTTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 551347 157 + 5243153 AAAGAGCAATTCTAAAATTACACATTTTATTGACGAGTGTGGTAATTAAAAGCTTCTGGTTAATTGAAGTTTTACG-----GTAACCATTA-CTTTTACTTCCATAAGCCAGTGGAGAAAAAAGAAATTTTGTTTAGTTATGGGTTCTGGTTAGCTGAGTTTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1884977 155 - 1938448 aaaGTGCAATTCTAAAATTACACAATTTATTGACAATTGTGGTAATT--TAGCTTCTGGTTAATTGAAGTTTTACG-----GTAACCATTA-CTTTTACCTCCATAAGCCAGTGGAAAAGAAAGAAATTTTGTTTAGTTATGGGTTCTGGTTAGCTGAGTTTA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2607789 160 - 159902609 AAAGAACAATTCTAAAATTATACATTTTATTAACAGTCATGGTAATT--TAGTTTCCGGTTGATTGAAGATTTACGATAATGTAACCAACA-TTTTTACCTCTATAAGCTAATGGAGAAAAGAGGGATTTTGTTTAGTTATGAGTTCTGGTTAGCTGAATTTA i micMur3.chr8 I 496 C 0 s proCoq1.NW_012151163v1 918921 160 + 1238772 GAAGAACAATTCCAAAATTATACATTTTGTTAACAGTCATGGTAATT--TAGCTTCTGGTTGATTGAAGTTTTACGATAATGTAACTAACA-TTTTTACCTCTATAAGCTAATGGAGAACAGAGGGATTTTGTTTAGTTATGAGTTCTGGTTAGCTGAGTTTC i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2491610 156 + 5252280 -----GCAATTCTAAAATTATACATTTTATTAACAGTCATGATAGTT--TAGCTTCTGGTTAATTGAAGTTTTACGGTAATATAAGCATTACTTTTTACCTCTATACGCTGATGGAGAAATGAGGGATTTTGTTGAGTTATGAGTTCTGGTTAGCTGACTTTA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2009087 155 + 64289059 AAAGAGCAATTCTAAAA-TACACATTTTATTAAAGGTTGTGATGTTG--GAGCATCTGGGCAATTGAAGTTTTACTATACTGTAACCA-CA-TTTTAACCTCCGTATACCAATGGAGAAAAAA---ATTTCATTTAGTTACAGGTTCTGGTTTGCTGAGTTTA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 505334 154 + 2232271 -----GCAATTCTAAAAATAAACATTTTATTAATAATCATAGTGATT--TAGCTTCTGGTTAGTTGAAGTTTTTCTCTGCTATAACCACT--TTTTGTCCTCCATCAACCAATGGATAAAAAAGTGATTGGGGCTAGTTATGGGTTCTGGTTAGCTGAGTTTA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91390329 798 - 120129022 I a score=5526697.000000 s hg38.chr2_KI270769v1_alt 9833 337 + 120616 GTTGACATTTTATTGTCTTGACATATTTTTCTTCTATTCTTCCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTAAATGCCGACTCAGTGGAACAATCTTTTGTTGGATTGAAACAGCTAATCGTAAGTGACAATGTGTTTGATTTCAGTGTTG----TTTTGTGATAAGTCCTGCCTGCCTTCATAATATTTTCTCTAGAAGTCA----------ATTATTTTGAA------------------------------------TATTATTCA--AAGCTCTTGCACATAAGT-AGAATTTTGTTGGAGTAGATGCCAGTCCTGT-GCACCAAAAAGCATCATATTAATACA s panTro5.chr2A 3447152 337 + 111504155 GTTGACATTTTATTGTCTTGACATATTTTTCTTCTATTCTTCCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTAAATGCCGACTCAGTGGAACAATCTTTTGTTGGATTGAAACAGCTAATCGTAAGTGACAATGTGTTTGATTTCAGTGTTG----TTTTGTGATAAGTCCTGCCTGCCTTCATAATATTTTCTCTAGAAGTCA----------ATTATTTTGAA------------------------------------TATTATTCA--AAGCTCTTGCACGTAAGT-AGAATTTTGTTGGAGTAGATGCCAGTCCTGT-GCACCAAAAAGCATCATATTAATACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3333908 337 + 114371477 GTTGACATTTTATTGTCTTGACATATTTTTCTTCTATTCTTCCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTAAATGCCGACTCAGTGGAACAATCTTTTGTTGGATTGAAACAGCTAATCGTAAGTGACAATGTGTTTGATTTCAGTGTTG----TTTTGTGATAAGTCCTGCCTGCCTTCATAATATTTTCTCTAGAAGTCA----------ATTATTTTGAA------------------------------------TATTATTCA--AAGCTCTTGCACGTAAGT-AGAATTTTGTTGGAGTAGATGCCAGTCCTGT-GCACCAAAAAGCATCATATTAATACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 207544 337 + 637652 GTTGACTTTTTATTGTCTTGACATATTTTTCTTCTATTCTTCCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTAAATGCCGACTCAGTGGAACAATCTTTTGTTGGATTGAAACAGCTAATCGTAAGTGACAATGTGTTTGATTTCAGTGTTG----TTTTGTGATAAGTCCTGCCTGCCTTCATAATATTTTCTCTAGAAGTCA----------ATTATTTTGAA------------------------------------TATTATTCA--AAGCTCTTGCACATAAGT-AGAATTTTGTTGGAGTAGATGCCAGTCCTGT-GCACCAAAAAGCATCATATTAATACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3007003 337 + 81552678 ATTGACATTTTATTGTCTTGACATATTTTTCTTCTATTCTTCCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTAAATGCCGACTCAGTGGAACAATCTTTTGTTGGATTGAAACAGCTAATTGTAAGTGACAATGTGTTTGATTTCAGTGTTG----TTTTGTGATAAGTCCTGCCTGCCTTCGTAATATTTTCTCTAGAAGTTA----------ATTATTTTGAA------------------------------------TATTACTCA--AAGCTCTTGCACAGAAGT-AGAATTTTGTTGGAGTAGATGCCAGTCCTGT-GCACCAAAAAGCATCATATTAATACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3264773 332 + 108979918 ACTGACATTTTATTGTCTTGACATATTTTTCTTCTCTTCTTCCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTAAATGCCGACTCAGTGGAACAATCTTTTGTTGGATTGAAACAGCTAATCGTAAGTGACAATGTGTTTGATTTCAGTG---------TTGTGATAAGTCCTGCCTGCCTTCATAATATTTTCTCTAGAAATTA----------ATTATTTTGAA------------------------------------TATTATTCA--TAGCTTTTGCACATAAGT-AGAATTTTGTTGGAGTAGATGCCAGTCCTGT-GCACCAAAAAGCATCATATTAATACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4977863 332 - 111193037 ACTGACATTTTATTGTCTTGACATATTTTTCTTCTCTTCTTCCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTAAATGCCGACTCAGTGGAACAATCTTTTGTTGGATTGAAACAGCTAATCGTAAGTGACAATGTGTTTGATTTCAGTG---------TTGTGATAAGTCCTGCCTGCCTTCATAATATTTTCTCTAGAAATTA----------ATTATTTTGAA------------------------------------TATTATTCA--TAGCTTTTGCACATAAGT-AGAATTTTGTTGGAGTAGATGCCAGTCCTGT-GCACCAAAAAGCATCATATTAATACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3372870 332 + 3644372 ACTGACATTTTATTGTCTTGACATATTTTTCTTCTCTTCTTCCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTAAATGCCGACTCAGTGGAACAATCTTTTGTTGGATTGAAACAGCTAATCGTAAGTGACAATGTGTTTGATTTCAGTG---------TTGTGATAAGTCCTTCCTGCCTTCATAATATTTTCTCTAGAAATTA----------ATTATTTTGAA------------------------------------TATTATTCA--TAGCTTTTGCACATAAGT-AGAATTTTGTTGGAGTAGATGCCAGTCCTGT-GCACCAAAAAGCATCATATTAATACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3325789 332 - 10304083 ACTGACATTTTATTGTCTTGACATATTTTTCTTCTCTTCTTCCTAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTAAATGCCGACTCAGTGGAACAATCTTTTGTTGGATTGAAACAGCTAATCGTAAGTGACAATGTGTTTGATTTCAGTG---------TTGTGATAAGTCCTGCCTGCCTTCGTAATATTTTCTCTAGAAATTA----------ATTATTTTGAA------------------------------------TATTATTCA--TAGCTTTTGCACATAAGT-AGAATTTTGTTGGAGTAGATGCCAGTCCTGT-GCACCAAAAAGCATCATATTAATACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410053 332 - 107702431 ACTGACATTTTATTGTCTTGACATATTTTTCTTCTCTTCTTCCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTAAATGCCGACTCAGTGGAACAATCTTTTGTTGGATTGAAACAGCTAATCGTAAGTGACAATATGTTTGACTTCAGTG---------TTGTGATAAGTCCTGCCTGCCTTCATAATATTTTCTCTAGAAATTA----------ATTATTTTGAA------------------------------------TATTATTCA--TAGCTCTTGCACATAAGT-AGAATTTTGTTGGAGTAGATGCCAGTCCTGT-GCACCAAAAAGCATCATATTAATACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 933399 332 + 1565135 ACTGACATTTTATTGTCTTGACATATTTTTCTTCTCTTCTTCCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTAAATGCCGACTCAGTGGAACAATCTTTTGTTGGATTGAAACAGCTAATCGTAAGTGACAATGTGTTTGATTTCAGTG---------TTGTGATAAGTCCTGCCTGCCTTCGTAATATTTTCTCTAGAAATTA----------ATAATTTTGAA------------------------------------TATTATTCA--TAGCTTTTGCACATAAGT-AGAATTTTGTTGGAGTAGATGCCAGTCCTGT-GCACCAAAAAGCATCATATTAATACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3316592 332 - 13651311 ACTGACATTTTATTGTCTCGACATATTTTTCTTCTCTTCTTCCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTAAATGCCGACTCAGTGGAACAATCTTTTGTTGGATTGAAACAGCTAATTGTAAGTGACAATGTGTTTGATTTCAGTG---------TTGTGATAAGTCCTGCCTGCCTTCGTAATATTTTCTCTAGAAATTA----------ATTATTTTGAA------------------------------------TATTATTCA--TAGCTCTTGCACATAAGT-AGAATTTTGTTGGAGTAGATGCCAGTCCTGT-GCACCAAAAAGCATCATATTAATACA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402199 337 - 108792865 ACTGACATTTTATTGTCTTGACATATTTTTCTTATATTCTTCCCAGGGAGATGCAGTGAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAGACTGCAGCAAAGAGACAAGTCCTAAATGCCAGCTCAGTGGAACCATCTTTTGGTGGACTGAAACAGCTAATCGTAAGTGACAATGTGTTTGATTTCAGCCTGG----CTTTCTGATAAGTCCTGTCTGTCTTCATGGCATTTTCTCTAGAAGTTA----------ATTACTTTGAA------------------------------------TGTTACTCA--GAGTTCTTGCACACAAGC-AGAATTCTGTTGGAGGAGACGCCAGTCCCCT-GCACCAGAAAGCATCATATTAACACA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065312 337 - 7082604 ATTGACATTTTATTGTCTTGACATATTTTTCTTATATTCTTCCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGAGAAAAGGCTGCAGCAAAGAGACAAGTCCTGAATGCCAGCTCAGTGGAACCGTCTTTTGTTGGATTGAAACAGCTAATCGTGAGTAACAATGTGTTTGATTTCAGTGTTG----TTTTCTGTTAAGTCCTGTCTGCCTTCATAATATTTTCTCTAGAAGTTA----------ATTATTTTGAA------------------------------------TATTATTCA--GAGTTCTTGCACCCAAGC-AGAACTCTGTTGGAGTAGATGCCAGTCTCGT-GCACCAGAAAGCATCATATTAACACA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 551504 337 + 5243153 ATTGACATTTTACTGTCTTGACATATTTTTCTTATATTCTTCCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAGGCTGCAGCAAAGAGACAAGTCCTAAATGCCAGCTCAGTGGAACCATCTTTTGTTGGATTGAAACAGCTAATCGTAAGTAACAATGTGTTTGATTTCAGTGTTG----TTTTCCGATAAGTCCTGTCTGCCTTCATAATATTTTCTCTAGAAGTTA----------ATTACTTTGAA------------------------------------TATTATTCA--GAGCTCTTGTACACAAGC-AGAATTCTGTTGGAGTAGATGCCAGTCCCGT-GCACCAGAAAGCATCATATTAACACA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1885132 337 - 1938448 ATTGCCATTTTATTGTCTTGACATATTTTTCTTATATTCTTTCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAGGCTGCAGCAAAGAGACAAGTCCTAAATGCCAGCTCAGTGGAACCATCTTTTGTTGGATTGAAACAGCTGATCGTAAGTAACAATGTGTTTGATTTCAGTGTTG----TTTTCTGATAAGTCCTGTCTGCCTTCATAATATTTTCTCTAGAAGTTA----------ATGACTTTGAA------------------------------------TATTATTCA--GAGCTCTTGCACACAAGC-AGAATTCTGTTGCAGTAGATGCTAGTCCTGT-GCACCAGAAAGCATCATATTAACACA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2607949 343 - 159902609 ATTGACATTTTATTGTCTTGACATGTTCTTCCTACATTCTTTCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCGGCGAAGAGACAAGTCCTAAACGCCAACTCAGTGGAACAGTCTTTTGTTGGATTGAAACAGCTCATTGTAAGTAACAATGTGTTTGATTTTCAGTTTG----TTTTTTGATAAGTATTACCTTCCTTCATAATATTTTCTCTAGAAGTTA----------ATTACTTTGAATGTAT-------------------------------TGTTATCTA--AAGCCC-TACCCATAAGTGAGAATTTTGTTGTCTTAGATACCAGTCCTGTAATAGCAAAAAGCATCATATTAATGCA i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 919081 343 + 1238772 ATTGACATTTTGTTGTCTTGACATAGTTTCCTTACGCTCTTTCCAGGGAGATGCGGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCGGCAAAGAGACAAGTCCTGAATGCCGCCTCGGTGGAACAGTCTTTCGTCGGATTGAAACAGCTCATTGTAAGTAACACTGCGTTTGATTTTCA-TTTG-----TTTTTGATAAGTATTACCTTCCTTGATAATATTTTCTATAGAAGGGA----------ATTACTTTGAACGTACTA-----------------------------TGTTATCCA--AAGCCC-TGCACATGAGTGAGAATTTTATTGTATTAGATACCAGTCCTGTAACAGCAAAAAGCATCATATTAATACA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2491766 385 + 5252280 ATTGACATTTTATTGTCTTGACATATTTTTCTTACATTCTTTCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTGAATGCCAGCTCCGTGGAGCAGTCTTTCGTGGGCCTGAAGCAGCTCATTGTAAGTGGCAATGTGTTTGATTTCCAGTTTG----TTTTTTGGTAAATATTACCTTCCTACGTAATATTTTCTCTAGAAGttattaatatattaatattatgaagttattaatatattaatattCTAAATTCTTTGAATTTGTTATCCA--AAGCCCTTGCACATAAGTGAGAATTTTGTTGGGTTAGATACTAGTCCTATAGAAGCAAATTGCATCCTATTAATACA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91391127 328 - 120129022 GTAAACATTTCATTATCTCTGCCTCTCTCTCCCACATTCTTTCCAGGGAGATGCAGTTAAAGACTTGATGCTTCGCTTCCTGGGTGAGAAGGCTGCAGCAAAGAGACAGGTCTTAAATGCCAGCTCAGTGGAGCAGTCCTTTGTGGGGCTGAAGCAGCTCATTGTAAGTAACCACACA-CTGATTTCAGCATGT------CTTTGATAAGCCCGGCTT-CCTTC-TAGGTCCTTCCCTGGAAGTTA----------ATTGCTCTGAA------------------------------------TACAGCGCAAGAAGCTGCTGCA---GAGC-A-AGCCTTGTTCTGTTTGATGCCAGTCCTGG-GAAGCAGG-AGCACTGCGCCAGC-TG i mm10.chr12 I 798 C 0 s canFam3.chr17 2009242 338 + 64289059 ATTAACATTTTATTGTCTTGACGTATTTTTCTTACATTCCTTCAAGGGGGATGCAGTTAAAGACCTGATGCTTCGCTTCCTGGGTGAGAGAGCCGCGGCAAAGAGACAGGTCTTAAATGCCGAGTCCGTAGAGCAGACTTTTGTTGGGTTGAAACAGCTCATCGTAAGTAATGAAGTGTTTGATTTCAATATTGTT--TTTTTTTATAAGTGCTGCCTTTTTTCATAGTATTTTCCTTA-CAGTTA----------ATTACTTTGAATG----------------------------------TATTTTCTA--AAGCCCTTGCATGTAAAT-AAAATTTTGTTGAATTAGATACCAATGCTGT-GCAGCAGAAA--AGCATATTAACATA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 505488 342 + 2232271 ATTAACATTTTATTGTCTTGACATATTTTTCTTATATTCTTTCAAGGGAGATGCAGTTAAAGACTTAATGCTTCGCTTCCTGGGTGAACAAGCTGCAGCAAAACGACAAGTCTTAAAGGCCAACTCAGTAGAACAATCTTTTGTTGGATTGAAACAACTAATTGTAAGTAACAGTGTATTTGTTTTTCAGTTTGTTTGTTTGTTTTTAAATCCTGCTTTCCTTCACAGTGTTTTCCCTAGAAGCTA----------ATTACTTTGAATA----------------------------------TATTATCCA--AATTCCTTGCACA-AAAT-AGAATTTCATGGGATTAGATACCATACTTGT-GCAGCAAAAATCATCATATCAATACA i dasNov3.JH580157 C 0 I 437 a score=87149.000000 s hg38.chr2_KI270769v1_alt 10170 8 + 120616 TGGATACT s panTro5.chr2A 3447489 8 + 111504155 TGGATACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334245 8 + 114371477 TGGATACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 207881 8 + 637652 TGGATACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3007340 8 + 81552678 TGGATACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265105 8 + 108979918 TGGATACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978195 8 - 111193037 TGGATACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373202 8 + 3644372 TGGATACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326121 8 - 10304083 TGGATACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410385 8 - 107702431 TGGATACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 933731 8 + 1565135 TGGATACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3316924 8 - 13651311 TGGATGCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402536 8 - 108792865 TGGATACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065649 8 - 7082604 TGGATACT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 551841 8 + 5243153 TGGATGCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1885469 8 - 1938448 CGGATACT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2608292 8 - 159902609 CAGATAAT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 919424 8 + 1238772 CAGATATT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2492151 8 + 5252280 CAGATAAT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91391455 8 - 120129022 CTGATCAT i mm10.chr12 C 0 C 0 s canFam3.chr17 2009580 7 + 64289059 CTT-TGAA i canFam3.chr17 C 0 C 0 e dasNov3.JH580157 505830 437 + 2232271 I a score=264247.000000 s hg38.chr2_KI270769v1_alt 10178 17 + 120616 TTTAAGCCTAATTAGTT s panTro5.chr2A 3447497 17 + 111504155 TTTAAGCCTAATTAGTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334253 17 + 114371477 TTTAAGCCTAATTAGTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 207889 17 + 637652 TTTAAGCCTAATTAGTT i gorGor5.CYUI01015435v1 C 0 I 1 s nomLeu3.chr19 3007348 17 + 81552678 TTTAAGCCTAATTGGTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265113 17 + 108979918 TCTAAGCCTAATTAGTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978203 17 - 111193037 TCTAAGCCTAATTAGTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373210 17 + 3644372 TCTAAGCCTAATTAGTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326129 17 - 10304083 TTTAAGCCTAATTAGTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410393 17 - 107702431 TTTAAGCCTAATTAGTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 933739 17 + 1565135 TTTAAGCCTAATTAGTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3316932 17 - 13651311 TTTAAGCCTAATTAGTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402544 17 - 108792865 TTTAACCCCAGTCAGTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065657 17 - 7082604 TTTAAGCCCGGTCAGTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 551849 14 + 5243153 TTTAAGCCCAGTC---T i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1885477 17 - 1938448 TTTAAGCCTAATCAGTT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2608300 17 - 159902609 TTTAAGTCTAATCAGTT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 919432 17 + 1238772 TTTAAGTCTAATCAGTT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2492159 17 + 5252280 TTTGGGCCTAACCAGTT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91391463 17 - 120129022 CTGAAGTTCAGTTGGTT i mm10.chr12 C 0 C 0 s canFam3.chr17 2009587 17 + 64289059 TTTAAGGTCAATTAGTT i canFam3.chr17 C 0 I 213 s dasNov3.JH580157 506267 17 + 2232271 TTTAAGTCCAATTAGTT i dasNov3.JH580157 I 437 C 0 a score=247884.000000 s hg38.chr2_KI270769v1_alt 10195 18 + 120616 AAAAAGCCATTATTGGAA s panTro5.chr2A 3447514 18 + 111504155 AAAAAGCCATTATTGGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334270 18 + 114371477 AAAAAGCCATTATTGGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 207907 18 + 637652 AAAAAGCCATTATTGGAA i gorGor5.CYUI01015435v1 I 1 C 0 s nomLeu3.chr19 3007365 18 + 81552678 AAAAAGCCATTATTGGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265130 18 + 108979918 AAAAAGCCATTATTGGAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978220 18 - 111193037 AAAAAGCCATTATTGGAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373227 18 + 3644372 AAAAAGCCATTATTGGAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326146 18 - 10304083 AAAAAGCCATTATTGGAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410410 18 - 107702431 AAAAAGCCATTATTGGAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 933756 18 + 1565135 AAAAAGCCATTATTGGAA i manLeu1.NW_012104432v1 C 0 M 330 s colAng1.NW_012118821v1 3316949 18 - 13651311 AAAAAGCCATTATTGGAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402561 18 - 108792865 AAAAAGCCATTATTGGAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065674 18 - 7082604 AAAAAGACATTATTGGAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 551863 18 + 5243153 TAAAAGCCGTTATTGGAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1885494 18 - 1938448 AAAAAGCCATTATTGGAA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2608317 18 - 159902609 AAAATGCTGTTGTTTTAA i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 919449 18 + 1238772 AAAATGCCATTATTTTAA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2492176 17 + 5252280 AAAATGCCATTGTTTCA- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91391480 7 - 120129022 A-----CTGTGA------ i mm10.chr12 C 0 C 0 s canFam3.chr17 2009817 18 + 64289059 AAATATCCATTATTTTAA i canFam3.chr17 I 213 C 0 s dasNov3.JH580157 506284 18 + 2232271 AAAAAGCTATTATTGTAA i dasNov3.JH580157 C 0 C 0 a score=1555815.000000 s hg38.chr2_KI270769v1_alt 10213 143 + 120616 ATGATCAAATTACTCAAAGCAGTGCATACTTTGATTGAGTTTGCTTCATCATATA----TAATAG----AGATAAATGA---TTTG----------TGTTCA-------TTTTTTAAAT-----A---------------------------------------------------------------TATTGC-----------------ATTTTCTGCATTTTGTG--TAGAAAGTTTATTATTGAATGGGTGAAT s panTro5.chr2A 3447532 143 + 111504155 ATGATCAAATTACTCAAAGCAGTGCATACTTTGATTGAGTTTGCTTCATCATATA----TAATAG----AGATAAATGA---TTTG----------TGTTCA-------TTTTTAAAAT-----A---------------------------------------------------------------TATTGC-----------------ATTTTCTGCATTTTGTG--TAGAAAGTTTATTATTGAATGGGTGAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334288 143 + 114371477 ATGATCAAATTACTCAAAGCAGTGCATACTTTGATTGAGTTTGCTTCATCATATA----TAATAG----AGATAAATGA---TTTG----------TGTTCA-------TTTTTAAAAT-----A---------------------------------------------------------------TATTGC-----------------ATTTTCTGCATTTTGTG--TAGAAAGTTTATTATTGAATGGGTGAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 207925 144 + 637652 ATGATCAAATTACTCAAAGCAGCGCATACTTTGATCGAGTTTGCTTCATCATATA----TAATAG----AGATAAATGA---TTTG----------TGTTCA------TTTTTTAAAAT-----A---------------------------------------------------------------TATTGT-----------------ATTTTCTGCATTTTGTG--TAGAAAGTTTATTATTGAATGGGTGAAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3007383 143 + 81552678 ATGATCAAATTACTCAAAGCAGCATATACTTTGATCGAGTTTGCTTCATCATATA----TAATAG----AGGTAAATGA---TTTG----------CATTCA-------TTTTTAAAAT-----A---------------------------------------------------------------TATTGC-----------------ATTTTCTGCATTTTGCG--TAGAAAGTTTATTATTGAATGGGTGAAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265148 140 + 108979918 ATGATCAGATTACTCAAAGCAGCATATACTTTGATCGAGTATGCTTCATCATGTA----TAATAG----AGATAAATGA---TTTG----------TGTTCG-------TTTTTAAAAT-----A---------------------------------------------------------------TATTGC-----------------ATTTTCTGCATTTTGTA--TAGAAAAT---TTATTGAATGGGTGAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978238 140 - 111193037 ATGATCAGATTACTCAAAGCAGCATATACTTTGATCGAGTATGCTTCATCATGTA----TAATAG----AGATAAATGA---TTTG----------TGTTCG-------TTTTTAAAAT-----A---------------------------------------------------------------TATTGC-----------------ATTTTCTGCATTTTGTA--TAGAAAAT---TTATTGAATGGGTGAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373245 140 + 3644372 ATGATCAGATTACTCAAAGCAGCATATACTTTGATCGAGTATGCTTCATCATGTA----TAATAG----AGATAAATGA---TTTG----------TGTTCG-------TTTTTAAAAT-----A---------------------------------------------------------------TATTGC-----------------ATTTTCTGCATTTTGTA--TAGAAAAT---TTATTGAATGGGTGAAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326164 140 - 10304083 ATGATCAGATTACTCAAAGCAGCGTATACTTTGATCGAGTATGCTTCATCATGTA----TAATAG----AGATAAATGA---TTTG----------TGTTCG-------TTTTTAAAAT-----A---------------------------------------------------------------TATTGC-----------------ATTTTCTGCATTTTGTA--TAGAAAAT---TTATTGAATGGGTGAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410428 140 - 107702431 ATGATCAGATTACTCAAAGCAGCATATGCTTTGATCGAGTATGTTTCATCATGTA----TAATAG----AGATAAATGA---TTTG----------TGTTCG-------TTTTTAAAAT-----A---------------------------------------------------------------TATTGC-----------------ATTTTCTGCATTTTGTA--TAGAAAAT---TTATTGAATGGGTGAAT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3316967 140 - 13651311 ATGATCAGATTACTCAGAGCAGCATATACTTTGATTGAGTATGCTTCATCATGTG----TAATAG----AGAGAAATGA---TCTG----------TGTTCG-------TTTTTAAAAT-----A---------------------------------------------------------------TATTGC-----------------ATTTTCTGCATTTTGTA--TAGAAAAT---TTATTGAATGGGTGAAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402579 137 - 108792865 ATGACCGAATTACTCAA------ATACACTTTGATGGAGTATGCTCCATCACATA----TAATGG----AGATAAATGA---TTTA----------TGTTCA-------TTCGTAAAAT-----A---------------------------------------------------------------TATTGT-----------------ATTTTCTGCACATTTTT--TAGAAAGTTTATTATTGAATGGATGGAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065692 144 - 7082604 ATGATCGAATTACTCAAAGCAGCATACACTTTGATGGAGTGTGCTTCTTCAGATA----TAATGG----AGATAAATGA---TTTA----------TGTTCA-------TTTGTAAAAT-----A---------------------------------------------------------------TATTGC-----------------ATTTTCTGCATTTTTTT-GTAGAAAGTTTATTATTGAATGGGTGGAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 551881 140 + 5243153 ATGATGGAATTACTCAAAGCAGCATACACTTTGATGGAGTATGCTTCATCAGATA----TAATGG----AGATAAATGA---TTTA----------TGTTCA-------TTTGTAAAAT-----A---------------------------------------------------------------TATTGC-----------------ATTTTCTGCATTTTTTA--TAGAAAGT---TTATTGAATGGGGGGAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1885512 144 - 1938448 GTGATCGAATTACTCAAGGCAGCATACACTTTGATGGAGTATGCTTCATTAGATA----TAATGG----AGATAAATGA---TTTC----------TGTTCA-------TTTGTAAAAT-----A---------------------------------------------------------------TATTGC-----------------ATTTTCTACATTTTTTTTGTAGAAAGTTT-GTATTGAATGGGTGAAT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2608335 146 - 159902609 ATGATCAAATTACTAAAAGCGGCATATACTTTGATCAAGTATGCTCTATCAAATA----CGATAGA---AGATAAATGA--TTTTA----------GGTTTG------ATTTTTTAAAT-----A---------------------------------------------------------------TACCCC-----------------ATTTTCTCTATTTCAGG--TAGAAATTTTATTATTGAATAGGTGAAG i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 919467 144 + 1238772 ATGATTAAATTACTTGAA-TAGCATATACTTTGATCAAGTATGCTTCATCAAATA----TGATAG----AGATAAATGA--TTTTA----------TGTTTG------ATTTTTAAAAT-----A---------------------------------------------------------------TACTCC-----------------ATTTTCTCCATTCCAGG--TAGAAATTTTATTATTGAATAGGTGGAG i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2492193 147 + 5252280 --GATCAGAGTACTTGAGCCAGCATGTACTTTGATTAAGTATGCTTTATCAGACA----TAATAAATGGGAATAAATGT--TTTTA----------TAATTG------TTTTTTAAAAT-----A---------------------------------------------------------------TGCTCC-----------------ATGTTCTGCATTTCAGA--TAGAGAACTGATCATTGAATAGGTAGAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91391487 228 - 120129022 ACAATCAGAGGGCTGCAGGCAGCC---------AGGTAGCAGACTCCCATTTCTA----GAACAA----ATACAGACAG---TTTGTGTGTTTGTTTGTTCAtttgtattttttgagat-----agtctcaccgtgtcacctagactggcctcattttcacaggctcaagggaccctcctCACCCTCTTCTTGCCTTGATGGTCATTTCAAATGTCCTCCATTTAGTC--TAG---GCTTACTGTTTAACTGGAGAAT i mm10.chr12 C 0 C 0 s canFam3.chr17 2009835 155 + 64289059 ATGATCAAGTTTCTTGAAGCAGAATATACTTTGATTAAAGATGCTCCATCAAATG----CAATAACTAAAGATAAGtaatttttta----------tgtttt-------ttttttttttttttaa---------------------------------------------------------------taCTCT-----------------GTTTTCTCCACTTGGTA--TAAAAGGTTTATTATTGAGTGGGTGGGT i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 506302 137 + 2232271 ATGATCAAATTATTTGACGTACCATATTCTGTGAATAAATATGCTTCATCAAATAAAATGAATAG----AGATAAATCA--TTTTA----------TATTCA-------TTTTTTA--------C---------------------------------------------------------------TACTCC-----------------ATTTCCTCCATTTGGTA--TAGAAGG----TAACTGGATAGAT---- i dasNov3.JH580157 C 0 C 0 e manLeu1.NW_012104432v1 933774 330 + 1565135 M a score=302493.000000 s hg38.chr2_KI270769v1_alt 10356 20 + 120616 TTCTGAACATTTTTAAGCTT s panTro5.chr2A 3447675 20 + 111504155 TTCTGAACATTTTTAAGCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334431 20 + 114371477 TTCTGAACATTTTTAAGCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208069 20 + 637652 TTCTGAACATTTTTAAGCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3007526 20 + 81552678 TTCTGAACACTTTTAAGCTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265288 20 + 108979918 TTCTGAACATTTTTAAGTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978378 20 - 111193037 TTCTGAACATTTTTAAGTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373385 20 + 3644372 TTCTGAACATTTTTAAGTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326304 20 - 10304083 TTCTGAACATTTTTAAGCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410568 20 - 107702431 TTCTGAACATTTTTAAGCTT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3317107 20 - 13651311 TTGTGAACATTTTTAAGCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402716 20 - 108792865 TTCTGAACATCTTTAAGCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065836 20 - 7082604 TTCTGAACATTTTTAAGCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552021 20 + 5243153 TTCTGAACATTTTTAAGCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1885656 20 - 1938448 TTCTGAACATTTTTAAGCTT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2608481 20 - 159902609 TTCTAAACATTTTTAAACTT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 919611 20 + 1238772 TTCTAAACATTTTTAAACTT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2492340 20 + 5252280 TTCTAAACACTTTTAAAGTT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91391715 20 - 120129022 TCCTGAACACTTTCAAATTT i mm10.chr12 C 0 I 22 s dasNov3.JH580157 506439 20 + 2232271 TTCTAAACATTTTAAAACTT i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I e manLeu1.NW_012104432v1 933774 330 + 1565135 M a score=304502.000000 s hg38.chr2_KI270769v1_alt 10376 30 + 120616 TGTCATGAATTCTATAAGT-AGGT-TTTTAAA s panTro5.chr2A 3447695 30 + 111504155 TGTCATGAATTCTATAAGT-AGGT-TTTTAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334451 30 + 114371477 TGTCATGAATTCTATAAGT-AGGT-TTTTAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208089 30 + 637652 TGTCATGAATTCTATAAGT-AGGT-TTTTAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3007546 30 + 81552678 TGTCATGAATTCTATAAGG-AGGT-TTTTAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265308 27 + 108979918 TGTCATGAATTCTATA----AGGT-TTTTAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978398 27 - 111193037 TGTCATGAATTCTATA----AGGT-TTTTAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373405 27 + 3644372 TGTCATGAATTCTATA----AGGT-TTTTAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326324 27 - 10304083 TGTCATGAATTCTATA----AGGT-TTTTAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410588 27 - 107702431 TGTCATGAATTCTATA----AGGT-TTTTAAA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3317127 27 - 13651311 TGTCATGAATTCTATA----AGGT-TTTTAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402736 30 - 108792865 TGTCATGAATTCTGTACGT-AGGT-TTTTAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065856 30 - 7082604 TGTCATGAATTCTGTAAGT-AGGT-TTTTAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552041 30 + 5243153 TGTCATGAATTCTGTAAGT-AGGT-TTTTAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1885676 30 - 1938448 TGTCATGAATTCCGTAAGT-AGGT-TTTTAAA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2608501 30 - 159902609 TGCCAGGAATTCCATAAGT-AGAC-TTTTAAA i micMur3.chr8 C 0 I 566 s proCoq1.NW_012151163v1 919631 30 + 1238772 TGCCAGGAATTCCATTAGT-CGAT-TTTTAAA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2492360 30 + 5252280 TGCCTTAAATTATAT-AGT-AGATGTCTTAAA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 506459 29 + 2232271 TACCATTAATTCCATAGATAATGT-TTTTA-- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91391735 22 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e manLeu1.NW_012104432v1 933774 330 + 1565135 M a score=10285.000000 s hg38.chr2_KI270769v1_alt 10406 1 + 120616 A s panTro5.chr2A 3447725 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334481 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208119 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3007576 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265335 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978425 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373432 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326351 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410615 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3317154 1 - 13651311 T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402766 1 - 108792865 A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065886 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552071 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1885706 1 - 1938448 A i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 919661 1 + 1238772 A i proCoq1.NW_012151163v1 C 0 I 322 s otoGar3.GL873658 2492390 1 + 5252280 A i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 506488 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91391735 22 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e manLeu1.NW_012104432v1 933774 330 + 1565135 M a score=22800.000000 s hg38.chr2_KI270769v1_alt 10407 2 + 120616 TT s panTro5.chr2A 3447726 2 + 111504155 TT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334482 2 + 114371477 TT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208120 2 + 637652 TT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3007577 2 + 81552678 TT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265336 2 + 108979918 TT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978426 2 - 111193037 TT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373433 2 + 3644372 TT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326352 2 - 10304083 TT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410616 2 - 107702431 TT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3317155 2 - 13651311 TT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402767 2 - 108792865 TT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065887 2 - 7082604 CT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552072 2 + 5243153 TT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1885707 2 - 1938448 TT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2492391 2 + 5252280 TT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 506489 2 + 2232271 TT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91391735 22 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 919662 322 + 1238772 I e manLeu1.NW_012104432v1 933774 330 + 1565135 M a score=17270.000000 s hg38.chr2_KI270769v1_alt 10409 3 + 120616 CAT s panTro5.chr2A 3447728 3 + 111504155 CAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334484 3 + 114371477 CAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208122 3 + 637652 CAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3007579 3 + 81552678 CAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265338 3 + 108979918 CGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978428 3 - 111193037 CAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373435 3 + 3644372 CAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326354 3 - 10304083 CAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410618 3 - 107702431 CAT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3317157 3 - 13651311 CAT i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 552074 3 + 5243153 CAT i cebCap1.NW_016107454v1 C 0 I 3 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91391735 22 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e saiBol1.JH378218 3065889 0 - 7082604 C e proCoq1.NW_012151163v1 919662 322 + 1238772 I e dasNov3.JH580157 506491 0 + 2232271 C e otoGar3.GL873658 2492393 0 + 5252280 C e aotNan1.NW_018507213v1 1885709 0 - 1938448 C e calJac3.chr14 3402769 0 - 108792865 C e manLeu1.NW_012104432v1 933774 330 + 1565135 M a score=1239446.000000 s hg38.chr2_KI270769v1_alt 10412 262 + 120616 ggctgggcgcagtggctcacacctgtaatcccagcactttgggaggccaaggcgggcagatcacaaggtcaggagttcaagaccagcctggccaacatggtg-aaccccatctctactaaaaatacaaaaattagctgggcatggtggtgcgttcctgtaatcccagatactcaggaggctgaggcaggagaatcgcttgaactgggacccgggaggtggaggttgcagtgagccgagatcacaccactgccactccagcctc s panTro5.chr2A 3447731 262 + 111504155 ggctgggcgcagtggctcacacctgtaatcccagcactttgggaggccgaggcgggcagatcacaaggtcaagagttcaagaccagcctggccaacatggtg-aaccccatctctactaaaaatacaaaaattagctgggcatggtggtgcgttcctgtaatcccagatacccaggaggctgaggcaggagaatcgcttgaactgggacccgggaggtggaggttgcagtgagtcgagatcacaccactgccactccagcctc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334487 262 + 114371477 ggctgggcgcagtggcttacacctgtaatcccagcactttgggaggccgaggcgggcagatcacaaggtcaagagttcaagaccagcctggccaacatggtg-aaccccatctctactaaaaatacaaaaattagctgggcatggtggtgcgttcctgtaatcccagatacccaggaggctgaggcaggagaatcgcttgaactgggacccgggaggtggaggttgcagtgagtcgagatcacaccactgccactccagcctc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208125 262 + 637652 ggccgggcgcagtggctcacacctgtaatcccagcactttgggaggccgaggcgggcagatcacaaggtcaggagttcaagaccagcctggccaacatggtg-aaccccatctctaccaaaaatacaaaaattagctgggcatggtggtgcgttcctgtaatcccagatactcaggaggctgaggcaggagaatcgcttgaactgggacccgggaggtggaggttgcagtgagccgagatcacaccactgccactccagcctc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3007582 262 + 81552678 ggctgggtgcagtggctcacacctgtaatcccagcaccttgggaggccgagtcgggcagatcac-aggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatggtggtgcattcctgtaagcccagatactcgggaggctgaggcaggagaatcgcttgaactgggacccgggtggcggaggttgcagtgagccgagatcacaccactgccactccagcctt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265341 263 + 108979918 ggctgggcgcagtggctcacgcctgtaatcccagcactctgggaggccgaggcgggcacatcatgaggtcaggagttcaaggccagcctggccaacatggtgaaagcccgtctctattaaaaatacaaaaattagctgggcatggtggtgcgttcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaactgggacccgggaggcagaggttgcagtgagccaaaatcacgccactgcaactccagcttg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978431 263 - 111193037 ggctgggcgcagtggctcacgcctgtaatcccagcactctgggaggccgaggcgggcacatcatgaggtcaggagttcaaggccagcctggccaacatggtgaaagcccgtctctattaaaaatacaaaaattagctgggcatggtggtgcgttcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaactgggacccgggaggcggaggttgcagtgagccgaaatcacgccactgcaactccagcttg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373438 263 + 3644372 ggctgggcgcagtggctcacgcctgtaatcccagcactctgggaggctgaggcgggcacatcatgaggtcaggagttcaaggccagcctggccaacatggtgaaagcccgtctctattaaaaatacaaaaattagctgggcatggtggtgcgttcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaactgggacccgggaggtggaggttgcagtgagccgaaatcacgccactgcaactccagcttg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326357 263 - 10304083 ggctgggcgcagtggctcacgcctgtaatcccagcactctgagaggccgaggcgggcacatcatgaggtcaggagttcaagaccagcctggccaacgtggtgaaagcccgtctctattaaaaatacaaaaattagctgggcatggtggtgcgttcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaactgggacccgggaggtggaggttgcagtgagccgaaatcacgccactgcaactccagcctg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410621 263 - 107702431 ggctgggcgcagtggctcacgcctgtaatcccagcactctgggaggccgaggcgggcacgtcatgaggtcaggaattcaagaccagcctggccaacatggtgaaagcccgtctctactaaaaatacaaaaattagttgggcatggtggtgtgttcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaactgggacccgggaggtggaggttgcagtgagccgaaatcacgccactgcaactccagcctg i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3317160 263 - 13651311 ggtcaggcgcggtggctcacgcctgtaatcccagcactctgggaggccgaggtgggcagatcatgaggtcaggagttcaagactagcctggccaacatggtgaaagcccgtctctactgaaaatacaaaaattagctgggcgtggtggcgcgttcctgtaatcccagctactcaggaggcggatgcaggagaatcgcttgaactgggacccgggaggcggaggttgcagtgacccgaaatcacaccactgcaactccaccctg i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91391735 22 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e saiBol1.JH378218 3065889 0 - 7082604 C e proCoq1.NW_012151163v1 919662 322 + 1238772 I e dasNov3.JH580157 506491 0 + 2232271 C e otoGar3.GL873658 2492393 0 + 5252280 C e cebCap1.NW_016107454v1 552077 3 + 5243153 I e aotNan1.NW_018507213v1 1885709 0 - 1938448 C e calJac3.chr14 3402769 0 - 108792865 C e manLeu1.NW_012104432v1 933774 330 + 1565135 M a score=213223.000000 s hg38.chr2_KI270769v1_alt 10674 45 + 120616 ggctacagagcgagactccgtctcaaaaaaataaaaataaaaaaa- s panTro5.chr2A 3447993 45 + 111504155 ggctacagagcgagactccgtctcaaaaaaatataaataaaaaaa- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334749 45 + 114371477 ggctacagagcgagactccgtctcaaaaaaatataaataaaaaaa- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208387 45 + 637652 ggctacagagcgagactccgtctcaaaaaaataaaaataaaaaaa- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3007844 46 + 81552678 ggataccaagcgagactccgtctcaaaaaaataaaaataaaaaaaT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265604 43 + 108979918 ggctacagagcgagactccatcttaaaaaaataaaa--aataaaT- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978694 43 - 111193037 ggctacagagcgagactccatcttaaaaaaataaaa--aataaaT- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373701 43 + 3644372 ggctacagagcgagactccatcttaaaaaaataaaa--aataaaT- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326620 43 - 10304083 ggctacagagcgagactccatcttaaaaaaataaaa--aataaaT- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410884 43 - 107702431 ggctacagagcgagactccatcttaaaaaaataaaa--aataaaT- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934108 43 + 1565135 ggctacagagcgagactccatcttaaaaaaataaaa--aataaaT- i manLeu1.NW_012104432v1 M 330 C 0 s colAng1.NW_012118821v1 3317423 43 - 13651311 ggctacagagcgagactccgtcttaaaaaaataaaa--aataaaT- i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91391735 22 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e saiBol1.JH378218 3065889 0 - 7082604 C e proCoq1.NW_012151163v1 919662 322 + 1238772 I e dasNov3.JH580157 506491 0 + 2232271 C e otoGar3.GL873658 2492393 0 + 5252280 C e cebCap1.NW_016107454v1 552077 3 + 5243153 I e aotNan1.NW_018507213v1 1885709 0 - 1938448 C e calJac3.chr14 3402769 0 - 108792865 C a score=38352.000000 s hg38.chr2_KI270769v1_alt 10719 3 + 120616 CAT s panTro5.chr2A 3448038 3 + 111504155 CAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334794 3 + 114371477 CAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208432 3 + 637652 CAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3007890 3 + 81552678 CAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265647 3 + 108979918 CAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978737 3 - 111193037 CAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373744 3 + 3644372 CAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326663 3 - 10304083 CAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410927 3 - 107702431 CAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934151 3 + 1565135 CAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3317466 3 - 13651311 CAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402769 3 - 108792865 CAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065889 3 - 7082604 CAT i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1885709 3 - 1938448 CAT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2492393 3 + 5252280 CAT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 506491 3 + 2232271 CAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91391735 22 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 919662 322 + 1238772 I e cebCap1.NW_016107454v1 552077 3 + 5243153 I a score=33929.000000 s hg38.chr2_KI270769v1_alt 10722 3 + 120616 TAG s panTro5.chr2A 3448041 3 + 111504155 TAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334797 3 + 114371477 TAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208435 3 + 637652 TAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3007893 3 + 81552678 TAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265650 3 + 108979918 TAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978740 3 - 111193037 TAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373747 3 + 3644372 TAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326666 3 - 10304083 TAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410930 3 - 107702431 TAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934154 3 + 1565135 TAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3317469 3 - 13651311 TAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402772 3 - 108792865 TAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065892 3 - 7082604 TAA i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1885712 3 - 1938448 TAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2492396 3 + 5252280 TAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91391757 3 - 120129022 TAG i mm10.chr12 I 22 C 0 s dasNov3.JH580157 506494 3 + 2232271 TAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 919662 322 + 1238772 I e cebCap1.NW_016107454v1 552077 3 + 5243153 I a score=1489078.000000 s hg38.chr2_KI270769v1_alt 10725 138 + 120616 TACTGGATCA-----CCATTGCTGTACAGGTTGATTTGTTTCCAATGAATTTATAATCTTAAAGACAGCTGTAATTGCGTTGGGTAGCTTTTCTAG---ATTA-AGGAGAAGATATTGGAAGTTTGTCGCGTATGTTTCCTTCAGGA s panTro5.chr2A 3448044 138 + 111504155 TACTGGATCA-----CCATTGCTGTACAGGTTGATTTGTTTCCAATGAATTTATAATCTTAAAGACAGCTGTAATCGCGTTGGGTAGCTTTTCTAG---ATTA-AGGAGAAGATGTTGGAAGTTTGTCGCGTATGTTTCCTTCAGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334800 138 + 114371477 TACTGGATCA-----CCATTGCTGTACAGGTTGATTTGTTTCCAATGAATTTATAATCTTAAAGACAGCTGTAATCGCGTTGGGTAGCTTTTCTAG---ATTA-AGGAGAAGATGTTGGAAGTTTGTCGCGTATGTTTCCTTCAGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208438 138 + 637652 TACTGGATCA-----CCATTGCTGTACAGGTTGATTTGTTTCCAATGAATTTATAATCTTAAAGACAGCTGTAATCGCGTTGGGTAGCTTTTCTAG---ATTA-AGGAGAAGATATTGGAAGTTTGTCGCGTATGTTTCCTTCAGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3007896 114 + 81552678 TACCAGATCA-----CCATTGCTGTACAGGTTGATCTGTTTCCAATGAATTTATAATCTTAAAGACAGCTGTAATCGCGTTGGGTAGTTTTTCTAG---ATTA-AGGAGAAGATATTGGAAGT------------------------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265653 143 + 108979918 TACTGGATCACTGATCCATTGCTGTACAGGTTGATTTGATTCCAGTGAATTTATAATCTTAAAGGCAGCTGGAATCGTGTTGGATAGCTTTTCTAG---ATGA-AGGAGAAGATATTGGAAGTTTGTCGTATATGTTTCCCTCAGGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978743 143 - 111193037 TACTGGATCACTGATCCATTGCTGTACAGGTTGATTTGATTCCAGTGAATTTATAATCTTAAAGGCAGCTGGAATCGTGTTGGATAGCTTTTCTAG---ATGA-AGGAGAAGATATTGGAAGTTTGTCGTATATGTTTCCCTCAGGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373750 143 + 3644372 TACTGGATCACTGATCCATTGCTGTACAGGTTGATTTGATTCCAGTGAATTTATAATCTTAAAGGCAGCTGGAATCGTGTTGGATAGCTTTTCTAG---ATGA-AGGAGAAGATATTGGAAGTTTGTCGTATATGTTTCCCTCAGGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326669 143 - 10304083 TACTGGATCACTGATCCATTGCTGTACAGGTTGATTTGGTTCCAGTGAATTTATAATCTTAAAGGCAGCTGGAATCGTGTTGGATAGCTTTTCTAG---ATGA-AGGAGAAGATATTGGAAGTTTGTCGTATATGTTTCCCTCAGGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3410933 140 - 107702431 TACTGGATCACTGATCCATTGCTGTACAGGTTGATTTGATTCCAGTGAATTTATAATCTTAAAGGCAGCTGGAATCGTGTTGGATAGCTGTTCTAG---AT----GGAGAAGATATTGGAAGTTTGTCGTATATGTTTCCCTCAGGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934157 143 + 1565135 TACTGGATCACTGATCCATTGCTGTACAGGTTGATTTGATTCCAGTGAATTTATAATCTTAAAGGCAGCTGGAATCGTGTTGGATAGCTTTTCTAG---ATGA-AGGAGAAGATATTGGAAGTTTGTCGTATATGTTTCCCTCAGGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3317472 138 - 13651311 CACTGGATGA-----CCATTGCTGTACAGATTGATTTGATTCCAGTGAATTCATAATCTTAAAGACAGCTGGAATCGTGTTGGATAGCTTTTCTAA---GTGA-AGGAGAAGATAGTGGAAGTTTGTCGTATGTGTTTCCTTCAGGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402775 138 - 108792865 TACTGGGTCA-----CCACTGCTGTACAGGTTGATTTGTTGCCAATGAATTTTTAATCTTAAAGGCAGCTGTAATCATGTTGGATAGCTTTTATAG---AGTA-AGGAGAAGATACTGGAAGTTGGCCGTATATGTTTCCCTCAGGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3065895 136 - 7082604 TACTGGATCA-----CCACTGCTGTACAGGTTGATTTGTTTCCAATGAATTTTTAATCTTAAAGGCAGCTATAATCATGTTGGATAGCTTTTCTAG---ATTA-AGGAGAAGATACTGGAAGTTTGTGG--TCTTTTTCCTTCGGGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552080 138 + 5243153 TACTGGATCA-----CCACTGCTGTACAGGTGGATTTGTTTCCAATGAATTTTTAATCTTAAAGGCAGCTATAATCATGTTGGATAGCTTTTCTAG---ATTA-AGGAGAAGATACTGGAAGTTTGTTGCATATGTTTCCTTCAGGA i cebCap1.NW_016107454v1 I 3 C 0 s aotNan1.NW_018507213v1 1885715 137 - 1938448 TACTGGATCA-----CCACTGCTGTACAGGTTGATTTGTTTCCGATGAATTTTTAATCTTAAAGGCAGCTATAATCATGTTGGATAGCTTTTCTAG---ATTA-AGGAGAAGATACTGGAAGTTTGTCGT-TATGTTTCCTCCAGGA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2492399 137 + 5252280 TGTTCGGTCA-----CCAATGCTGTACATGTTGATTTATTTCCAGGGAATTTCTAATCTACAAGACAGCT-TAATAGTGTTAAGTTGCTTTCCTTT---ATTA-AGGAGAAAATATCAGAATCCTCTCACCTGCATTTCATTCAGGA i otoGar3.GL873658 C 0 I 454 s mm10.chr12 91391760 139 - 120129022 TTCTGCATCA-----TCAGCACTACACTGGCTGACGTTGTTCCAGTGATTTTTAGGGTTGTGGGAGAACTTCAGCAGTGTAACCAGTTTCCTCTGG---ATTATTAGGGAAAGCCCTAGAAGTTGATCATACATGTCTCCTGTAGGA i mm10.chr12 C 0 C 0 s dasNov3.JH580157 506497 141 + 2232271 TTCTGGATAA-----TCAGTACTGTGCATGCTGAGTTGTTTCTAGTGAACTTGCAATCTTTATGAGAACATTAATATTATTGGGTTGCTTTTCTAACTTATTA-AGGAAAAAATACTGTAAGTTTATCATGTAAGTTTCATTCAGGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 919662 322 + 1238772 I a score=132849.000000 s hg38.chr2_KI270769v1_alt 10863 12 + 120616 ATCCTATGGTAG s panTro5.chr2A 3448182 12 + 111504155 ATCCTATGGTAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334938 12 + 114371477 ATCCTATGGTAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208576 12 + 637652 ATCCTATGGTAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008010 11 + 81552678 -TCCTAAGGTAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265796 12 + 108979918 ATCCTAAGGCAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978886 12 - 111193037 ATCCTAAGGCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373893 12 + 3644372 ATCCTAAGGCAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326812 12 - 10304083 ATCCTAAGGCAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411073 12 - 107702431 ATCCTAAGGCAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934300 12 + 1565135 ATCCTAAGGCAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3317610 12 - 13651311 GCCCTAAGGCAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402913 12 - 108792865 ATCCTAAGGTAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066031 12 - 7082604 ATCCTAAGGTAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552218 12 + 5243153 ACCCTAAGGTAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1885852 12 - 1938448 ATCCTAAGGTAG i aotNan1.NW_018507213v1 C 0 C 0 s mm10.chr12 91391899 12 - 120129022 ATCCTCGGGCAG i mm10.chr12 C 0 I 54 s dasNov3.JH580157 506638 12 + 2232271 ATTTTAAGGTAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 919662 322 + 1238772 I e otoGar3.GL873658 2492536 454 + 5252280 I a score=1033219.000000 s hg38.chr2_KI270769v1_alt 10875 114 + 120616 CCATGGGGTAAGTACTCTGAAATGAGAGCCCCATCTCACACCG-AATCTCAGCTCCCCAGTGTTGTCTCCTTAGGGGGCTGTGGAATTGCTCTGCTAGCTCATCCACACGGTTGC s panTro5.chr2A 3448194 114 + 111504155 CCGTGGGGTAAGTACTCTGAAATGAGAGCCCCATCTCACACCG-AATCTCACCTCCCCAGTGTCGTCTCCTTAGGGGGCTGCGGAATTGCTCTGCTAGCTCATCCACACGCTTGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3334950 114 + 114371477 CCGTGGGGTAAGTACTCTGAAATGAGAGCCCCATCTCACACCG-AATCTCACCTCCCCAGTGTCGTCTCCTTAGGGGGCTGTGGAATTGCTCTGCTAGCTCATCCACACGCTTGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208588 114 + 637652 CCATGGGGTAAGTACTCTGAAATGAGAGCCCCATCTCACACCG-AATCTCACCTCCCCAGTGTCGTCTCCTTAGGGGGCTGTGGAATTGCTCTGCTAGCTCATCCACACGGTTGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008021 114 + 81552678 CCATGGGGTAAGTACACTGAAATGAGAGCCCCATCTCACACCA-AATCTCACCTCCTCAGTGTCGTCTCCTTAGGGGGCTGTGGAATTGCTCTGCGAGCTCATCCACGCGGTTGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265808 114 + 108979918 CCATCGGGTAAGTACTCTGAAATGAGAGCCCCGGCTCACGCCG-AATCTCAGCTCCCCAGTGCCGTCTCCTTAGGGGGCTGTGGAATTGCTCTTCTTGCTCATCCAGACGGTTGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4978898 114 - 111193037 CCATCGGGTAAGTACTCTGAAATGAGAGCCCCGGCTCACGCCG-AATCTCAGCTCCCCAGTGCCGTCTCCTTAGGGGGCTGTGGAATTGCTCTTCTTGCTCATCCAGACAGTTGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3373905 114 + 3644372 CCATCGGGTGAGTACTCTGAAATGAGAGCCCCGGCTCACGCCG-AATCTCAGCTCCCCAGTGCCGTCTCCTTAGGGGGCTGTGGAATTGCTCTTCTTGCTCATCCAGACGGTTGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326824 114 - 10304083 CCATCGGGTAAGTACTCTGAAATGAGAGCCCCGTCTCACGCCG-AATCTCAGCTCCCCAGTGCCGTCTCCTTAGGGGGCTGTGGAATTGCTCTTCTTGCTCATCCAGACGGTTGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411085 114 - 107702431 GCATCGGGTAAGTACTTTGAAATGAGAGCCCTGTCTCACGCCG-AATCTCAGCTCCCCAGTGCCGTCTCCTTAGGGGGCTGTGGAATTGCTCTTCTTGCTCATCCAGACGGTTGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934312 114 + 1565135 CCATCGGGTAAGTACTCTGAAATGAGAGCCCTGTCTCACGCCG-AATCTCAGCTCCCCAGTGCCGTCTCCTTAGGGGGCTGTGGAATTGCTCTTCTTGCTCATCCAGACGGTTGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3317622 114 - 13651311 CCATCGGGTCAGTACTCTGGAATGAGAGCCCCGTCTCACGCCG-AGTCTCAGCTCCCCAGTGCCGTCTCCTTAGGGGGCTGTGGAATTGCTCTTCTTGCTCATCCAGACGGTTGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3402925 112 - 108792865 CCATCGGGTAAGTCCTCTGAAATGAGAGCCCCGTCTCA--CCG-AATCTCACCTCCCCAGTGTCGTCTCGTTAGGAGGCTGTGGAGTTGCTCTGCCAGCGCATCCAGACGGATGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066043 99 - 7082604 CCATTGGGTAAATCCTCTGAAACGAGAGCCCCATCTCA--CCG-AATCTCCCCTCC------------CGTTAGGAGG-TGTGGAATTGCCCCGCCAGCACATCCAGACGGCCGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552230 112 + 5243153 CCATCGGGTAAGTCCTCTGAAATGAGAGCCCCGTCTCA--CCG-AATCTCACCTCCCCGGTGTCATCTCGTTAGGAGACTGTGGAATTGCCCTGCCAGCGCATCCAGACGGATGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1885864 112 - 1938448 CCATCAGGTAGGTCCTCTGAAATGAGAGCCCCGTCTCA--CCG-AATCTCACCTCCCCAGTGTCATCTCGTTAGGAGGCTGTGGAATTGCTCCGCCAGCGCATCCAGACGGATGC i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 506650 96 + 2232271 CCATGGTG-------------------GCCATATCTCAAGCTGTATTCTCCTTTCCCCAATTTAGTGCCACTCAGATATTCTAGAATTGTTCCTCCATGATCTCTAGCTAGGTAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91391911 54 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 919662 322 + 1238772 I e otoGar3.GL873658 2492536 454 + 5252280 I a score=315534.000000 s hg38.chr2_KI270769v1_alt 10989 28 + 120616 CTAGAGTGGACTTAGCAAAGCCATGCTC s panTro5.chr2A 3448308 28 + 111504155 CTAGAGTGGACTTAGCAAAGCCATGCTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335064 28 + 114371477 CTAGAGTGGACTTAGCAAAGCCATGCTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208702 28 + 637652 CTAGAGTGGACTTAGCAAAGCCATGCTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008135 28 + 81552678 CTAGAGTGGACTTAGCAAAGCCACGCTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265922 28 + 108979918 CTAGAGTGAACTTAGCAAAGCCATGCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979012 28 - 111193037 CTAGAGTGAACTTAGCAAAGCCATGCTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3374019 28 + 3644372 CTAGAGTGAACTTAGCAAAGCCATGCTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3326938 28 - 10304083 CTAGAGTGGACTTAGCAAAGCCTTGCTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411199 28 - 107702431 CTAGAGTGGACTTAGCAAAGCCTTGCTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934426 28 + 1565135 CTAGAGTGGACTTAGCAAAGCCTTGCTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3317736 28 - 13651311 CTAGAGTGGACTCAGCAAAGCCATGCTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403037 28 - 108792865 CAAGAGTGGACTTAGCAAAGCCATGCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066142 28 - 7082604 CAAGAGTGGACTTAGCAAAGCCATGCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552342 28 + 5243153 CCAGAGTGGACTTAGCAAAGCCATGCTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1885976 28 - 1938448 CAGGAGTGGACTTAGCAAAGCCATGCTT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2492990 26 + 5252280 CCAGGGCGCACTTAGC-CAGCCCCACT- i otoGar3.GL873658 I 454 C 0 s dasNov3.JH580157 506746 28 + 2232271 CTAATGTAGATTTAGCAAAACCATTCTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91391911 54 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 919662 322 + 1238772 I a score=96221.000000 s hg38.chr2_KI270769v1_alt 11017 10 + 120616 -CCATGCC-------------------TGC s panTro5.chr2A 3448336 10 + 111504155 -CCATGCC-------------------TGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335092 10 + 114371477 -CCATGCC-------------------TGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208730 10 + 637652 -CCATGCC-------------------TGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008163 10 + 81552678 -CCATGCC-------------------TGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265950 10 + 108979918 -CCATGCC-------------------TGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979040 10 - 111193037 -CCATGCC-------------------TGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3374047 10 + 3644372 -CCATGCC-------------------TGC i macNem1.NW_012011978v1 C 0 M 550 s cerAty1.NW_012000820v1 3326966 10 - 10304083 -CCATGCC-------------------TGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411227 10 - 107702431 -CCATGCC-------------------TGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934454 10 + 1565135 -CCATGCC-------------------TGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3317764 10 - 13651311 -CCATGCC-------------------TGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403065 10 - 108792865 -CCGTGCC-------------------TGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066170 9 - 7082604 -CCAGGCC--------------------GC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552370 29 + 5243153 -CCATGCCCGCACGCTGTCAGCAGGTGTGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886004 10 - 1938448 -CCATGCC-------------------CGC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493016 10 + 5252280 -CTGTTTC-------------------TGA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91391965 10 - 120129022 -CCACGTC-------------------TGA i mm10.chr12 I 54 C 0 s dasNov3.JH580157 506774 11 + 2232271 CAAGTGTC-------------------TGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 919662 322 + 1238772 I a score=58281.000000 s hg38.chr2_KI270769v1_alt 11027 10 + 120616 ATGCAGTCAA s panTro5.chr2A 3448346 10 + 111504155 ATGCAGTCAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335102 10 + 114371477 ATGCAGTCAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208740 10 + 637652 ATGCAGTCAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008173 10 + 81552678 ATGCAGTCAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3265960 10 + 108979918 ATGCAGTCAA i rheMac8.chr13 C 0 I 170 s macFas5.chr13 4979050 10 - 111193037 ATGCAGTCAA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3326976 10 - 10304083 ATGCAGTCAA i cerAty1.NW_012000820v1 C 0 I 170 s chlSab2.chr14 3411237 10 - 107702431 ATGCAGTCAA i chlSab2.chr14 C 0 I 170 s manLeu1.NW_012104432v1 934464 10 + 1565135 ATGCAGTCAA i manLeu1.NW_012104432v1 C 0 I 170 s colAng1.NW_012118821v1 3317774 10 - 13651311 ATGCAGTCAA i colAng1.NW_012118821v1 C 0 I 170 s calJac3.chr14 3403075 8 - 108792865 AGGCTGTC-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066179 8 - 7082604 ATGCTGTC-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552399 8 + 5243153 ACGCTGTC-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886014 8 - 1938448 ATGCTGTC-- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493026 9 + 5252280 GCACAGTCA- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91391975 9 - 120129022 GCACGGTCA- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 506785 10 + 2232271 GTATGGTCAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 919662 322 + 1238772 I e macNem1.NW_012011978v1 3374057 550 + 3644372 M a score=3575.000000 s hg38.chr2_KI270769v1_alt 11037 3 + 120616 GTT s panTro5.chr2A 3448356 3 + 111504155 GTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335112 3 + 114371477 GTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208750 3 + 637652 GTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008183 3 + 81552678 GTT i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 4979060 3 - 111193037 ATT i macFas5.chr13 C 0 I 167 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91391984 0 - 120129022 C e canFam3.chr17 2009990 1 + 64289059 I e saiBol1.JH378218 3066187 0 - 7082604 C e proCoq1.NW_012151163v1 919662 322 + 1238772 I e dasNov3.JH580157 506795 0 + 2232271 C e otoGar3.GL873658 2493035 0 + 5252280 C e cebCap1.NW_016107454v1 552407 0 + 5243153 C e aotNan1.NW_018507213v1 1886022 0 - 1938448 C e calJac3.chr14 3403083 0 - 108792865 C e colAng1.NW_012118821v1 3317784 170 - 13651311 I e manLeu1.NW_012104432v1 934474 170 + 1565135 I e chlSab2.chr14 3411247 170 - 107702431 I e cerAty1.NW_012000820v1 3326986 170 - 10304083 I e macNem1.NW_012011978v1 3374057 550 + 3644372 M e rheMac8.chr13 3265970 170 + 108979918 I a score=39649.000000 s hg38.chr2_KI270769v1_alt 11040 8 + 120616 AGTGGGCA s panTro5.chr2A 3448359 8 + 111504155 AGTGGGCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335115 8 + 114371477 AGTGGGCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208753 8 + 637652 AGTGGGCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008186 8 + 81552678 AGTGGGTG i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3403083 8 - 108792865 AGTGGGCG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066187 8 - 7082604 AGTGGGCG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552407 8 + 5243153 AGTGGGCG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886022 8 - 1938448 AGTGGGCG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493035 7 + 5252280 -GTGGGTG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91391984 7 - 120129022 -GTGGGCA i mm10.chr12 C 0 C 0 s dasNov3.JH580157 506795 6 + 2232271 --TGGGTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 919662 322 + 1238772 I e colAng1.NW_012118821v1 3317784 170 - 13651311 I e manLeu1.NW_012104432v1 934474 170 + 1565135 I e chlSab2.chr14 3411247 170 - 107702431 I e cerAty1.NW_012000820v1 3326986 170 - 10304083 I e macNem1.NW_012011978v1 3374057 550 + 3644372 M e macFas5.chr13 4979063 167 - 111193037 I e rheMac8.chr13 3265970 170 + 108979918 I a score=79621.000000 s hg38.chr2_KI270769v1_alt 11048 11 + 120616 CACTTTCTTGA s panTro5.chr2A 3448367 11 + 111504155 CACTTCCTTGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335123 11 + 114371477 CACTTTCTTGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208761 11 + 637652 CACTTTCTTGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008194 10 + 81552678 CACTTTC-TGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266140 11 + 108979918 CACTGTCTTGA i rheMac8.chr13 I 170 C 0 s macFas5.chr13 4979230 11 - 111193037 CACTGTCTTGA i macFas5.chr13 I 167 C 0 s cerAty1.NW_012000820v1 3327156 11 - 10304083 CACTATCTTGA i cerAty1.NW_012000820v1 I 170 C 0 s chlSab2.chr14 3411417 11 - 107702431 CACTGTCTTGA i chlSab2.chr14 I 170 C 0 s manLeu1.NW_012104432v1 934644 11 + 1565135 CACTGTCTTGA i manLeu1.NW_012104432v1 I 170 C 0 s colAng1.NW_012118821v1 3317954 11 - 13651311 CACTGTCTTGA i colAng1.NW_012118821v1 I 170 C 0 s calJac3.chr14 3403091 11 - 108792865 CTCTTTCCTGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066195 11 - 7082604 TGCTTTCTTGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552415 11 + 5243153 CACTTTCTTGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886030 11 - 1938448 CGCTTTCTTGA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493042 8 + 5252280 --CTTTATCA- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91391991 11 - 120129022 TGCCTTGTGGA i mm10.chr12 C 0 C 0 s dasNov3.JH580157 506801 11 + 2232271 TGCTTTGTGGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 919662 322 + 1238772 I e macNem1.NW_012011978v1 3374057 550 + 3644372 M a score=262293.000000 s hg38.chr2_KI270769v1_alt 11059 20 + 120616 AGGGGTTTGGAGAGTGAGGT s panTro5.chr2A 3448378 20 + 111504155 AGGGGTTTGGAGAATGAGGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335134 20 + 114371477 AGGGGTTTGGAGAATGAGGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208772 20 + 637652 AGGGGTTTGGAGAGTGAGGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008204 20 + 81552678 GGGGGTTTGGAGAGTGAGGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266151 20 + 108979918 AGGGGTTTGGAGAGTGAGGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979241 20 - 111193037 AGGGGTTTGGAGAGTGAGAT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3327167 20 - 10304083 AGGGGTTTGGAGAGTGAGGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411428 20 - 107702431 AGGGGTTTGGAGAGTGAGGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934655 20 + 1565135 AGGGGTTTGGAGAGTGAGGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3317965 20 - 13651311 AGGGGTTTGGAGAGTGAGGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403102 20 - 108792865 AGGGGTTTGGAAAGTGAGGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066206 20 - 7082604 AGAGGTTTGGAAAGTGAGGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552426 20 + 5243153 AGGGGTTTGGAAAGTGAGGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886041 20 - 1938448 AGGGGTTTGGAAAGTGAGGT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 919984 20 + 1238772 AGGGGTTTGGAGAGTGAGGT i proCoq1.NW_012151163v1 I 322 C 0 s otoGar3.GL873658 2493050 20 + 5252280 GAGGGTATGGAGAGCGAGGT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91392002 20 - 120129022 AGGGATCTGGGAAGCCATGT i mm10.chr12 C 0 I 181 s dasNov3.JH580157 506812 20 + 2232271 AGAGATTTAAAAAATGAAAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e macNem1.NW_012011978v1 3374057 550 + 3644372 M a score=333175.000000 s hg38.chr2_KI270769v1_alt 11079 32 + 120616 CCTTGATTTTGGGAAT---AAGTCCCACCGGCTGT s panTro5.chr2A 3448398 32 + 111504155 CCTTGATTTTGGGAAT---AAGTCCCACTGGCTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335154 32 + 114371477 CCTTGATTTTGGGAAT---AAGTCCCACTGGCTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208792 32 + 637652 CCTTGATTTTGGGAAT---AAGTCCCACCGGCTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008224 32 + 81552678 CCTTGATTTTGGGAAT---AAGTCCCACCGGCTGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266171 32 + 108979918 CCTTGATTTTGGGAAT---AAGTCCCACCGGCTGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979261 32 - 111193037 CCTTGATTTTGGGAAT---AAGTCCCACCGGCTGT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3327187 32 - 10304083 CCTTGATTTTGGGAAT---AAGTCCCACCGGCTGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411448 32 - 107702431 CCTTGATTTTGGGAAT---AAGTCCCACCGGCTGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934675 32 + 1565135 CCTTGATTTTGGGAAT---AAGTCCCACCGGCTGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3317985 32 - 13651311 CCTTGATTTTGGGAAT---AAGTCCCACCAGCTGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403122 20 - 108792865 CCTT-GGTTTGGGAAT---AAGTC----------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066226 32 - 7082604 CCTTCGTTTTGGGAGT---AAGTCCCAGCGGCTGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552446 32 + 5243153 TCTTGGTTTTGGGAAT---AAGTCCCAGCGGCTGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886061 32 - 1938448 CCTTGGTTTTGGGAAT---AAGTCCCAATGGCTGT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 920004 32 + 1238772 GCGTGACTTTGGGAAC---ATGTCCCACTGGCTGT i proCoq1.NW_012151163v1 C 0 I 77 s otoGar3.GL873658 2493070 32 + 5252280 GAATGACTTTGGGAAC---AGGTCCCACCAGCTTT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 506832 35 + 2232271 GCTTGACTTTGATAATGAGAAGTTCCACCAGCTGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e macNem1.NW_012011978v1 3374057 550 + 3644372 M a score=356490.000000 s hg38.chr2_KI270769v1_alt 11111 70 + 120616 -CTGAAAC--TCATGT--TGAAATGC-GCCCTTATCCTGA--CTGT---ATTTCAGCGGCACAT---GGTCCAGA----CACTCTCCA s panTro5.chr2A 3448430 71 + 111504155 -CTGAAAC--TCATGT--TGAAATGCAGCCCTTATCCTGA--CTGT---ATTTCAGCGGCACAT---GGTCCAGA----CACTCTCCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335186 71 + 114371477 -CTGAAAC--TCATGT--TGAAATGCAGCCCTTATCCTGA--CTGT---ATTTCAGCGGCACAT---GGTCCAGA----CACTCTCCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208824 71 + 637652 -CAGAAAC--TCATGT--TGAAATGCAGCCCTTATCCTGA--CTGT---ATTTCAGCGGCACAT---GGTCCAGA----CACTCTTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008256 73 + 81552678 -CTGAAAC--TCATGT--TGAAATGCAGCCCTTATCCTGA--CTAT---ATTTCAACGGCACAT---GGTCCAGA--CTCACTCTCCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266203 63 + 108979918 -CTGAAAC--TCGTGT---------------TCACCGTGA--CTGTTGAATTTCAGCAGCACAT---GGTCCGGA--CTCACTCTTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979293 63 - 111193037 -CTGAAAC--TCGTGT---------------TCACCGTGA--CTGTTGAATTTCAGCAGCACAT---GGTCCGGA--CTCACTCTTGA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3327219 63 - 10304083 -CTGAAAC--TCGTGT---------------TCACCCTGA--CTGTTGAATTTCAGCAGCACAT---GGTCCGGA--CTCACTCTCGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411480 63 - 107702431 -CTGAAAC--TCGGGT---------------TCACCCTGA--CTGTTGAATTTCAGCAGCACAT---GGTCCGTA--CTCACTCTCAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934707 63 + 1565135 -CTGAAAC--TCGTGT---------------TCACCCTGA--CTGTTGAATTTCAGCAGCACAT---GGTCCGGA--CTCACTCTCGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318017 76 - 13651311 -CTGAAAC--TCGTGT--TGAAATGCAGCCCTCACCCTGA--CTGTTAAATTTCAGCAGTGCAT---GGTCCAGA--CTCACTCTCGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403142 31 - 108792865 ----------------------------------------------------CCAGCGGCGCGT---GGTCTGGA--CTCACTCTTGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066258 71 - 7082604 -CTGAAAC--TCATAT--TGAGATGCAGCGCTCACCCTGA--CCGT-----TCCAGCGGCACGT---GGTCTAGA--CTCACTCTTGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552478 71 + 5243153 -CTGAAAC--TCACGT--TGAAATGCAGCGCTCACCCTGA--CTGT-----TCCAGTGGCACGT---GGTCTGGA--CTCACTCTTGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886093 71 - 1938448 -CTGAAAC--TCACGT--TGAAATGCAGCACTCACCCTGA--CTGT-----TCCAGCGGCACGT---GGTCTGGA--CTCAGTCTTGG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493102 74 + 5252280 -CTGAAACTTTCTTGT--TGAAAT-------TCACCCTTGCCCTGTGACATTTCAGTGGCACTT---GGTCCGTGTCCTCAGCTTTG- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 506867 79 + 2232271 GTAAAAAC--TCTTGCTTTGAAATTTAACTCTCTCCCTGG--CTGC---TTTTCAGTGACACAGCCAGCCATGTA--CAAATTGTTAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920036 77 + 1238772 I e macNem1.NW_012011978v1 3374057 550 + 3644372 M a score=459060.000000 s hg38.chr2_KI270769v1_alt 11181 41 + 120616 TTTGGGTGAACAATCTGGAGGACATGTATTCACCTTTCAAC s panTro5.chr2A 3448501 41 + 111504155 TTTGGGTGAACAATCTGGAGGACATGTATTCACCTTTCAAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335257 41 + 114371477 TTTGGGTGAACAATCTGGAGGACATGTATTCACCTTTCAAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208895 41 + 637652 TTTGGGTGAACAATCTGGAGGACATGTATTCACCTTTCAAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008329 41 + 81552678 TTTGGGTGAACAATCTGGAGGACATATATTCACCTTTCAAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266266 41 + 108979918 TTTGGGTGAACAATCTGGAGGACATATATTCACCTGTCATC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979356 41 - 111193037 TTTGGGTGAACAATCTGGAGGACATATATTCACCTGTCATC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3327282 41 - 10304083 TTTGGGTGAACAATCTGGAGGACATATATTCACCTGTCATC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411543 41 - 107702431 TTTGGGTGAACAATCTGGAGGACGTATATTCACCTGTCATC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934770 41 + 1565135 TTTGGGTGAACAATCTGGAGGACATATATTCACCTGTCATC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318093 41 - 13651311 TTTGGGTGAACAATCTGGAGGACATATATTCACCTATCATC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403173 41 - 108792865 TTTGGGTGAACAGTCTGGAGGACGCATCTTCTCTTTGCAGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066329 41 - 7082604 TTTGGGTGAACAGTCTGGAGGACGTTTATTCACTTTCTAAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552549 41 + 5243153 TTTGGGTGAACAGTCTGGAGGACGTATATTCACTTTCCAAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886164 41 - 1938448 TTTGGGTGAACAGTCTGGACGACGTATATTCACTTTCCAAC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 920113 41 + 1238772 TTTGGATGAACAATCTGAAGGACGCGTATTCACTTTTCAAC i proCoq1.NW_012151163v1 I 77 I 357 s otoGar3.GL873658 2493176 41 + 5252280 ATTGGGTGAGCAATCTGGACAACAGGTATTCAGTTTTCAAC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 506946 41 + 2232271 TTTGGGTGAGCAGTCTGAAGGAGATATATCAACTTTTCACC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e macNem1.NW_012011978v1 3374057 550 + 3644372 M a score=742500.000000 s hg38.chr2_KI270769v1_alt 11222 74 + 120616 TTTCAAAAAAGAGAATGGAATTTCCTAATTTACTTAT-----TTTTCTAATAGTTCCCCATCTTGTTTTTCTCAATTGT s panTro5.chr2A 3448542 74 + 111504155 TTTCAAAAAAGAGAATGGAATTTCCTAATTTACTTAT-----TTTTCTAATAGTTCCCCATCTTGTTTTTCTCAATTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335298 74 + 114371477 TTTCAAAAAAGAGAATGGAATTTCCTAATTTACTTAT-----TTTTCTAATAGTTCCCCATCTTGTTTTTCTCAATTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 208936 74 + 637652 CTTCAAAAAAGAGAATGGAATTTCCTAATTTACTTAT-----TTTTCTAATAGTTCCCCATCTTGTTTTTCTCAATTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008370 74 + 81552678 CTTCAAAAAAGAGAATGGAATTTTCTAATTTACTTAT-----TTTTCTAATAGTTCCCCATCATGTTTTTCTCAGTTGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266307 74 + 108979918 CTTCAAAAAAGAGAATGGAATTTCCTAATTTACTTAT-----TTTTCTAATAGTTCCCCATCTTGTTTTTCTCAATTGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979397 74 - 111193037 CTTCAAAAAAGAGAATGGAATTTCCTAATTTACTTAT-----TTTTCTAATAGTTCCCCATCTTGTTTTTCTCAATTGT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3327323 74 - 10304083 CTTCAAAAAAGAGAATGGAATTTCCTAATTTACTTAT-----TTTTCTAATAGTTCCCCATCTTGTTTTTCTCAATTGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411584 74 - 107702431 CTTCAAAAAAGAAAATGGAATTTCCTAATTTACTTAT-----TTTTCTAATAGTTCCCCATCTTATTTTTCTCAATTGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934811 74 + 1565135 CTTCAAAAAAGAGAATGGAATTTCCTAATTTACTTAT-----TTTTCTAATAGTTCCCCATCTTGTTTTTCTCAATTGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318134 74 - 13651311 CTTCAAAAAAGAGAATGGAATTTCCTAATTTACTTAT-----TTTTCTAATAGTTCCCCATCTTGTTTTTCTCAATTGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403214 74 - 108792865 CTTCCAAAGAGAGAATGGAATTTCCTGCTTCACTTAT-----TTTGCCAATAGTTCCCTATCTTGTTTCTCTCAATTGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066370 74 - 7082604 CTTCGAAAGAGAGTACGGAATTTCCTACTTCACTTAT-----TTTTCCAATAGTTCTCTATCTTGTTTCTCTCAATCGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552590 74 + 5243153 CTTCGAAAGAGAGAGTGGAATTTCCTACTTCACTTAT-----TTTTCCAATAGTTCCCTATCTTGTTTATCTCAATCGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886205 70 - 1938448 CTTC----GAGAGAATGGAATTTCTTACTTCACTTAT-----TTTTCCAGTAGTTCCCCATCTTGTTTCTCTCAATTGT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493217 73 + 5252280 CTTTGAAAAGGAAGGTGGGGTCTCCTACTTCACTTCT-----CTTTCTGAGAGTTACC-AGCTTGTTTTTCTCTGTTGT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 506987 78 + 2232271 CTTTGAAAAGGAGAATGAAATTTCTTGCTTTACTTGGCTTCATTTTTTAAGAGTTCCT-ATTTCATTTTTCTCAATTGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920154 357 + 1238772 I e macNem1.NW_012011978v1 3374057 550 + 3644372 M a score=204562.000000 s hg38.chr2_KI270769v1_alt 11296 22 + 120616 TACTAATTCTTCTGCACCGGGC s panTro5.chr2A 3448616 22 + 111504155 TACTAATTCTTCTGCACCGGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335372 22 + 114371477 TACTAATTCTTCTGCACCGGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209010 22 + 637652 TACTAATTCTTCTGCACCGGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008444 22 + 81552678 TACTAATTCTTCTGCACCGGGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266381 22 + 108979918 TACTAATTCTTCTGCACCGAGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979471 22 - 111193037 TACTAATTCTTCTGCACCGAGC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3327397 22 - 10304083 TACTAATTCTTCTGCACCGAGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411658 22 - 107702431 TACTAATTCTTCTGCACCGAGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934885 22 + 1565135 TGCTAATTCTTCTGCACCGAGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318208 22 - 13651311 TACTAATTCTTCTGCACCGGGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403288 20 - 108792865 TACGGATTCTTCT--ACCAGGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066444 22 - 7082604 TACTGATTCTTCTGCACCAGGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552664 22 + 5243153 TGCTGATTCTTCTGCACCAGGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886275 22 - 1938448 TACTGATTCTTCTGCACCAGGC i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 507065 22 + 2232271 GACTAATTCTTATGTACTAAGC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920154 357 + 1238772 I e otoGar3.GL873658 2493290 0 + 5252280 C e macNem1.NW_012011978v1 3374057 550 + 3644372 M a score=19110.000000 s hg38.chr2_KI270769v1_alt 11318 2 + 120616 TT s panTro5.chr2A 3448638 2 + 111504155 TT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335394 2 + 114371477 TT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209032 2 + 637652 TT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008466 2 + 81552678 TT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266403 2 + 108979918 TT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979493 2 - 111193037 TT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3327419 2 - 10304083 TT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411680 2 - 107702431 TT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934907 2 + 1565135 TT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318230 2 - 13651311 TT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3066466 2 - 7082604 TT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552686 2 + 5243153 TT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886297 2 - 1938448 TT i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 507087 2 + 2232271 TT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920154 357 + 1238772 I e otoGar3.GL873658 2493290 0 + 5252280 C e calJac3.chr14 3403308 0 - 108792865 C e macNem1.NW_012011978v1 3374057 550 + 3644372 M a score=5159.000000 s hg38.chr2_KI270769v1_alt 11320 1 + 120616 C s panTro5.chr2A 3448640 1 + 111504155 C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335396 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209034 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008468 1 + 81552678 C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266405 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979495 1 - 111193037 C i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3327421 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411682 1 - 107702431 C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934909 1 + 1565135 C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318232 1 - 13651311 C i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 507089 1 + 2232271 T i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e saiBol1.JH378218 3066468 0 - 7082604 C e proCoq1.NW_012151163v1 920154 357 + 1238772 I e otoGar3.GL873658 2493290 0 + 5252280 C e cebCap1.NW_016107454v1 552688 0 + 5243153 C e aotNan1.NW_018507213v1 1886299 0 - 1938448 C e calJac3.chr14 3403308 0 - 108792865 C e macNem1.NW_012011978v1 3374057 550 + 3644372 M a score=397622.000000 s hg38.chr2_KI270769v1_alt 11321 113 + 120616 AGATTTCACCAA--------------tttttttttttttttttttgagatggagtttcactcttgttgcccaggc----tggagtgcaatggcgtgatctcagctc-actgcaacctccacctcccgggttc s panTro5.chr2A 3448641 127 + 111504155 AGATTTCACCAAtttttttttttttttttttttttttttttttttgagatggagtttcactcttgttgcccaggc----tggagtgcaatggcgtgatctcagctc-actgcaacctccacctcccgggttc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335397 120 + 114371477 AGATTTCACCTA-------Atttttttttttttttttttttttttgagatggagtttcactcttgttgcccaggc----tggagtgcaatggcgtgatctcagctc-actgcaacctccacctcccgggttc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209035 116 + 637652 AGATTTCACCAA-----------ttttttttttttttttttttttgagatggagtttcactcttgttgcccaggc----tggagtgcaatggcgtgatctcagctc-actgcaacctgcgcctcctgggttc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008469 108 + 81552678 AGATTTCCCCTA------------------Ctttttgttttttttgagacggagtttcattcttgttgcccagtc----tggagtgcaatggcatgatctcagctc-actgcaacttccgcctcc-gggttc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266406 103 + 108979918 AGATTTCACC-------------------------ttttttttttgagacagttttttgctcttgttacccaggc----tggagtgcaattgtacaatctcggctcaactgcaacctctgcctcccaggttc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979496 102 - 111193037 AGATTTCACC-------------------------ttttttttttgagacagttttttgctcttgttacccaggc----tggagtgcaattgtacaatctcggctc-actgcaacctctgcctcccaggttc i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3327422 105 - 10304083 AGATTTCACC----------------------tttttttttttttgagacagttttttgctcttgttacccaggc----tggagtgcaattgtacaatctcggctc-actgcaacctctgccttccgggttc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411683 107 - 107702431 AGATTTCACC------------------------tttttctttttgagacagagttttgctcttgttacccaggctggatggagtgcaattgtacaatcttggctc-actgcaacctctgcctccggggttc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 934910 105 + 1565135 AGATTTCACC----------------------tttttttttttttgagacagttttttgctcttgttacccaggc----tggagtgcaattgtacaatctcggctc-actgcaacctctgcctcccgggttc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318233 110 - 13651311 AGATTTCACCtt---------------ttttttttttttttttttgagacagagttttgctc--gttacccaggc----tggagtgcaatggtgcaatctcggctc-actgcaacctctgcctcctgggttc i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e saiBol1.JH378218 3066468 0 - 7082604 C e proCoq1.NW_012151163v1 920154 357 + 1238772 I e dasNov3.JH580157 507090 0 + 2232271 C e otoGar3.GL873658 2493290 0 + 5252280 C e cebCap1.NW_016107454v1 552688 0 + 5243153 C e aotNan1.NW_018507213v1 1886299 0 - 1938448 C e calJac3.chr14 3403308 0 - 108792865 C e macNem1.NW_012011978v1 3374057 550 + 3644372 M a score=111706.000000 s hg38.chr2_KI270769v1_alt 11434 22 + 120616 aagtgattctcctgc-ctcagct s panTro5.chr2A 3448768 22 + 111504155 aagtgattctcctgc-ctcagct i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335517 22 + 114371477 aagtgattctcctgc-ctcagct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209151 22 + 637652 aagcgattctcctgc-ctcagct i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008577 22 + 81552678 aagcgattctcctgc-ctcagct i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266509 22 + 108979918 aagcgattctcctgc-ctcggcc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979598 22 - 111193037 aagcgattctcctgc-ctcggcc i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3327527 22 - 10304083 aagcgattctcctgc-ctcggcc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411790 22 - 107702431 aagcgattctcctgc-ctcagcc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 935015 22 + 1565135 aagcgattctcctgc-cttggcc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318343 22 - 13651311 aagcgattctcctgc-ctcagcc i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2493290 23 + 5252280 AACTAATTCTTCTGTACTAAGCT i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e saiBol1.JH378218 3066468 0 - 7082604 C e proCoq1.NW_012151163v1 920154 357 + 1238772 I e dasNov3.JH580157 507090 0 + 2232271 C e cebCap1.NW_016107454v1 552688 0 + 5243153 C e aotNan1.NW_018507213v1 1886299 0 - 1938448 C e calJac3.chr14 3403308 0 - 108792865 C e macNem1.NW_012011978v1 3374057 550 + 3644372 M a score=46473.000000 s hg38.chr2_KI270769v1_alt 11456 14 + 120616 tcccgagtagctgg s panTro5.chr2A 3448790 14 + 111504155 tcccgagtagctgg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335539 14 + 114371477 tcccgagtagctgg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209173 14 + 637652 tcctgagtagctgg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008599 14 + 81552678 tcccgagtagctgg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266531 13 + 108979918 tcccacatagcag- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979620 14 - 111193037 tcccacatagcagg i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3327549 14 - 10304083 tcccacatagcagg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411812 14 - 107702431 tcccacatagcggg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 935037 14 + 1565135 tcccacatagcagg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318365 14 - 13651311 tcccacatagcggg i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e saiBol1.JH378218 3066468 0 - 7082604 C e proCoq1.NW_012151163v1 920154 357 + 1238772 I e dasNov3.JH580157 507090 0 + 2232271 C e otoGar3.GL873658 2493313 0 + 5252280 C e cebCap1.NW_016107454v1 552688 0 + 5243153 C e aotNan1.NW_018507213v1 1886299 0 - 1938448 C e calJac3.chr14 3403308 0 - 108792865 C e macNem1.NW_012011978v1 3374057 550 + 3644372 M a score=233092.000000 s hg38.chr2_KI270769v1_alt 11470 40 + 120616 gattacaggcgtgcaccaccacacccggctaattttttgt s panTro5.chr2A 3448804 40 + 111504155 gattacaggcgtgcaccaccacacccggctaattttttgt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335553 40 + 114371477 gattacaggcgtgcaccaccacacccggctaattttttgt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209187 40 + 637652 gattacaggcgtgcaccaccacacccggctaattttttgt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008613 40 + 81552678 gattacaggcatgcaccaccacgcctggctaattttttgt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266544 40 + 108979918 gattacaggcgtgcaccaccacacccagctaattttttgt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979634 40 - 111193037 gattacaggcgtgcaccaccacacccagctaattttttgt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3374607 40 + 3644372 gattacaggcgtgcaccaccacacccagctaattttttgt i macNem1.NW_012011978v1 M 550 C 0 s cerAty1.NW_012000820v1 3327563 40 - 10304083 gattacaggtgctcaccaccacacccagctaattttttgt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411826 40 - 107702431 gattacaggcgcacaccaccacacccagctaatttttTGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 935051 40 + 1565135 gattacaggcgcgcaccaccacacccagctaattttttgt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318379 40 - 13651311 gattacaggcgcacaccaccacacccagctaattttttgt i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e saiBol1.JH378218 3066468 0 - 7082604 C e proCoq1.NW_012151163v1 920154 357 + 1238772 I e dasNov3.JH580157 507090 0 + 2232271 C e otoGar3.GL873658 2493313 0 + 5252280 C e cebCap1.NW_016107454v1 552688 0 + 5243153 C e aotNan1.NW_018507213v1 1886299 0 - 1938448 C e calJac3.chr14 3403308 0 - 108792865 C a score=541352.000000 s hg38.chr2_KI270769v1_alt 11510 121 + 120616 atttttagtagagacagggtttcaccatggccaggctggtcttgaactcctgacctcaggtgatccgcctgcctcaccctcccag-agtgctgggatt--ataggcgtgagccaccgcacccga s panTro5.chr2A 3448844 121 + 111504155 atttttagtagagacagggtttcaccatggccaggctggtcttgaactcctgacctcaggtgatccgcctgcctcaccctcccag-agtgctgggatt--ataggcgtgagccaccgcacccga i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335593 121 + 114371477 atttttagtagagacagggtttcaccatggccaggctggtcttgaactcctgacctcaggtgatccgcctgcctcaccctcccag-ggtgctgggatt--ataggcgtgagccaccgcacccaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209227 121 + 637652 atttttagtagagacagggtttcaccatggccaggctggtcttgaactcctgacctcaggtgatccacctgcctcgccctcccag-agtgctgggatt--ataggcgtgagccaccgcacccga i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008653 121 + 81552678 atttttagtagagacggggtttcaccatggccaggctggtcttgaactcctgacctcaggtgatccgcctgcctcgccctcccag-agtgctgggatt--acaggtgtgagccactgcacccga i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266584 121 + 108979918 a-ttttagta-agatgaggtttcaccatggccaggct-gccttgaactcctgacctcaggcgacccacctgccttgccctcccagaagccctgggattacacaggcgtaagccaccgcacGGGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979674 121 - 111193037 atttttagtagagatgaggtttcaccatggccaggctggtcttgaactcctgacctcaggcgacccacccgccttgccctcccag-agccctgggatt--acaggcgtaagccaccacacGGGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3374647 121 + 3644372 atttttagtagagatgaggtttcaccatggccaggctggtcttgaactcctgacctcaggcgacccacccgccttgccctcccag-agcgctgggatt--acaggcgtaagccaccgcacGGGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3327603 121 - 10304083 atttttagtagagatgaggtttcaccatggccaggctggtcttgaactcctgacctcaggcgacccacccgccttgctctcccag-agcgctgggatt--acaggcgtaagccaccgcaccgga i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 935091 121 + 1565135 atttttagtagagatgaggtttcaccatggccaggctggtcttgaactcctgacctcaggcgacccacccgccttgccctcccag-agcgctgggatt--acaggcgtaagccaccgcaccgga i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318419 121 - 13651311 atttttagtagagatgaggtttcaccatggccaggctggtcttgaactcctgacctcaggcgacccacccacctcgccctcccag-agtgctgggatt--acagacgtgagccactgcacttga i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2608531 566 - 159902609 I e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e saiBol1.JH378218 3066468 0 - 7082604 C e proCoq1.NW_012151163v1 920154 357 + 1238772 I e dasNov3.JH580157 507090 0 + 2232271 C e otoGar3.GL873658 2493313 0 + 5252280 C e cebCap1.NW_016107454v1 552688 0 + 5243153 C e aotNan1.NW_018507213v1 1886299 0 - 1938448 C e calJac3.chr14 3403308 0 - 108792865 C e chlSab2.chr14 3411866 0 - 107702431 C a score=7800.000000 s hg38.chr2_KI270769v1_alt 11631 1 + 120616 c s panTro5.chr2A 3448965 1 + 111504155 c i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335714 1 + 114371477 c i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209348 1 + 637652 c i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008774 1 + 81552678 c i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266705 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979795 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3374768 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3327724 1 - 10304083 c i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 935212 1 + 1565135 c i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318540 1 - 13651311 c i colAng1.NW_012118821v1 C 0 C 0 s micMur3.chr8 2609097 1 - 159902609 C i micMur3.chr8 I 566 C 0 s otoGar3.GL873658 2493313 1 + 5252280 C i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e saiBol1.JH378218 3066468 0 - 7082604 C e proCoq1.NW_012151163v1 920154 357 + 1238772 I e dasNov3.JH580157 507090 0 + 2232271 C e cebCap1.NW_016107454v1 552688 0 + 5243153 C e aotNan1.NW_018507213v1 1886299 0 - 1938448 C e calJac3.chr14 3403308 0 - 108792865 C e chlSab2.chr14 3411866 0 - 107702431 C a score=12000.000000 s hg38.chr2_KI270769v1_alt 11632 1 + 120616 c s panTro5.chr2A 3448966 1 + 111504155 c i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335715 1 + 114371477 c i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209349 1 + 637652 c i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008775 1 + 81552678 c i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266706 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979796 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3374769 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3327725 1 - 10304083 c i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 935213 1 + 1565135 c i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318541 1 - 13651311 c i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3066468 1 - 7082604 C i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552688 1 + 5243153 C i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886299 1 - 1938448 C i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2609098 1 - 159902609 C i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2493314 1 + 5252280 C i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920154 357 + 1238772 I e dasNov3.JH580157 507090 0 + 2232271 C e calJac3.chr14 3403308 0 - 108792865 C e chlSab2.chr14 3411866 0 - 107702431 C a score=121184.000000 s hg38.chr2_KI270769v1_alt 11633 10 + 120616 AGATTTCACC s panTro5.chr2A 3448967 10 + 111504155 AGATTTCACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335716 10 + 114371477 AGATTTCACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209350 10 + 637652 AGATTTCACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008776 10 + 81552678 AGATTTCACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266707 10 + 108979918 AGATTTCACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979797 10 - 111193037 AGATTTCACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3374770 10 + 3644372 AGATTTCACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3327726 10 - 10304083 AGATTTCACC i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 935214 10 + 1565135 AGATTTCACC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318542 10 - 13651311 AGATTTCACC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3066469 10 - 7082604 AGATTTCACC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552689 10 + 5243153 AGATTTCACC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886300 10 - 1938448 AGATTTCACC i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2609099 10 - 159902609 AGATTTCACC i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2493315 10 + 5252280 AAATTTCACA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 507090 10 + 2232271 GGATTTCACC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91392022 181 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920154 357 + 1238772 I e calJac3.chr14 3403308 0 - 108792865 C e chlSab2.chr14 3411866 0 - 107702431 C a score=11849.000000 s hg38.chr2_KI270769v1_alt 11643 1 + 120616 T s panTro5.chr2A 3448977 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335726 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209360 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008786 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266717 1 + 108979918 T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979807 1 - 111193037 T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3374780 1 + 3644372 T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3327736 1 - 10304083 T i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 935224 1 + 1565135 T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318552 1 - 13651311 T i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3066479 1 - 7082604 T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552699 1 + 5243153 T i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886310 1 - 1938448 T i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2609109 1 - 159902609 T i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2493325 1 + 5252280 C i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91392203 1 - 120129022 T i mm10.chr12 I 181 C 0 s dasNov3.JH580157 507100 1 + 2232271 T i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920154 357 + 1238772 I e calJac3.chr14 3403308 0 - 108792865 C e chlSab2.chr14 3411866 0 - 107702431 C a score=113236.000000 s hg38.chr2_KI270769v1_alt 11644 9 + 120616 ATTT-TAAGC s panTro5.chr2A 3448978 9 + 111504155 ATTT-TAAGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335727 9 + 114371477 ATTT-TAAGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209361 9 + 637652 ATTT-TAAGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008787 9 + 81552678 ATTT-TAAGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266718 9 + 108979918 ATTT-TAAGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979808 9 - 111193037 ATTT-TAAGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3374781 9 + 3644372 ATTT-TAAGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3327737 9 - 10304083 ATTT-TAAGC i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 935225 9 + 1565135 ATTT-TAAGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318553 9 - 13651311 ATTT-TAAGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403308 9 - 108792865 ATTT-TAAGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066480 9 - 7082604 ATTT-TAAGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552700 9 + 5243153 ATTT-TAAGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886311 9 - 1938448 ATTT-TAAGC i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2609110 9 - 159902609 ACTG-TGAGT i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2493326 10 + 5252280 ATTGTTAAGT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91392204 9 - 120129022 GTTT-CAAGC i mm10.chr12 C 0 C 0 s dasNov3.JH580157 507101 9 + 2232271 ACTT-TAAGC i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920154 357 + 1238772 I e chlSab2.chr14 3411866 0 - 107702431 C a score=970569.000000 s hg38.chr2_KI270769v1_alt 11653 76 + 120616 AAACTTTAGTTCCTAAAGATATAATAGTTGAGAAGTTTAGAAA-------------------------TTTCTGGAGGATTAAACTTTGCAGCCCATTGAA s panTro5.chr2A 3448987 76 + 111504155 AAACTTTAGTTCCTAAAGATATAATAGTTGAGAAGTTTAGAAA-------------------------TTTCTGGAGGATTAAACTTTGCAGCCCATTGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335736 76 + 114371477 AAACTTTAGTTCCTAAAGATATAATAGTTGAGAAGTTTAGAAA-------------------------TTTCTGGAGGATTAAACTTTGCAGCCCATTGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209370 76 + 637652 AAACTTTAGTTCCTAAAGATATAATAGTTGAGAAGTTTAGAAA-------------------------TTTCTCGAGGATTAAACTTCGCAGCCCATTGAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008796 76 + 81552678 AAATTTTAGTTCCTAAAGATACAATAGCTGAGAAGTTTAGAAA-------------------------TTTCTCAAGGATTAAACTTTGCAGCCCATTGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266727 76 + 108979918 AAATTTTAGTTCCTAAAGACATAATAGTTGAGAAGTTTAGAAA-------------------------TTTCTTGAGGATTAAACTTTATCGCCCATTGAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979817 76 - 111193037 AAATTTTAGTTCCTAAAGACATAATAGTTGAGAAGTTTAGAAA-------------------------TTTCTTGAGGATTAAACTTTACCGCCCATTGAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3374790 76 + 3644372 AAATTTTAGTTCCTAAAGACATAATAGTTGAGAAGTTTAGAAA-------------------------TTTCTTGAGGATTAAACTTTACCGCCCATTGAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3327746 76 - 10304083 AAATTTTAGTTCCTAAAGACATAATAGTTGAGAAGTTTAGAAA-------------------------TTTCTTGAGGATTAAACTTTACCGCCCATTGAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411866 76 - 107702431 AAATTTTAATTCCTAAAGACATAATAGTTGAGAAGTTTAGAAA-------------------------TTTCTTGAGGATTAAACTTTACAGCCCATTGAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 935234 76 + 1565135 AAATTTTAGTTCCTAAAGACATAATAGTTGAGAAGTTTAGAAA-------------------------TTTCTTGAGGATTAAACTTTACCGCCCATTGAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318562 76 - 13651311 AAATTTTCGTTCCTAAAGACATAATAGTTGAGAAGTTTAGAAA-------------------------TTTCTTGAGGATTAAACTTTACAGCCCATTGAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403317 76 - 108792865 AAATTTTAGTTCCTAAAGATATAATAGTTGAAAGGTTTAGAAA-------------------------TTTCTTGAGGATTAAATTTTGTAGCCCATTGAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066489 76 - 7082604 AAATTTTAGTTCCTAAAGATATAATAGTTGACAGGTTTAGAAA-------------------------TTTCTTGAGGATTAAATTTTGTAGCCCATTGAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552709 73 + 5243153 AAATTTTAATTCCTTAAGATATAA---TTGAAAGGTTTAGAAA-------------------------TTTCTCAAGGATTAAATTTTGTGGCCCATTGAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886320 75 - 1938448 AAA-TTTAATTCCTAAAGATATAATAGTTGAAAGGTTTAGAAA-------------------------TTTCTTGAGGATTAAATTTTGTAGCCCATTGAA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2609119 76 - 159902609 AAGCTTAAGTTCTTCAAGATACAGTAGCTGAGAGGTGTAGAAA-------------------------TTTATTGAGGATTTAAGTTTGCCACCCATTTAA i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2493336 76 + 5252280 AACCTTAAGTTTTTCAAGATACAGTAATTGAGAAGTGTAGAAA-------------------------TCTATTGAGGAATAAAGTTTGCCACCCATTTAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91392213 98 - 120129022 AAGTTTTAGGACCTAAAGGTATACTATTTGAGTAGGTCTGAAAGATATACCATTTGAGGCTTACACTTTTTATTAAGGATTAA---CTGCAGATCATCTAA i mm10.chr12 C 0 I 175 s dasNov3.JH580157 507110 76 + 2232271 ACGCTGCCGTTCTTAAGGCTATAATAGTTTAGGGGGTTAGAAA-------------------------TTTATTGTGGATTTAACTTTGCAGCCCATTTAA i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920154 357 + 1238772 I a score=729591.000000 s hg38.chr2_KI270769v1_alt 11729 67 + 120616 ATGACAGGTGAAGG---------TTAGCCTGTGAA------CTAAAACAG--------AAAATGAGAATGTTTTAAAGTTTATTTTGGAG s panTro5.chr2A 3449063 67 + 111504155 ATGACAGGTGAAGG---------TTAGCCTGTGAA------CTAAAACAG--------AAAATGAGAATGTTTTAAAGTTTATTTTGGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335812 67 + 114371477 ATGACAGGTGAAGG---------TTAGCCTGTGAA------CTAAAACAG--------AAAATGAGAATGTTTTAAAGTTTATTTTGGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209446 67 + 637652 ATGACAGGTGAAGG---------TTAGCCTGCGAA------CTAAAACAG--------AAAATGAGAATGTTTTAAAGTTTATTTTGGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008872 67 + 81552678 ATGACAGGTGAAGG---------TTAGCCTGTGAA------CTAAAATAG--------AAAATGAGAATGTCTTAAAGTTTATTTTGGAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266803 74 + 108979918 ATGACAGGTGAAGG---------TTAGCCTATGAA------CTAAAACAGAAAACTTCAAAACGAAAATGTTT-GAGGTTTATTTTGGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979893 74 - 111193037 ATGACAGGTGAAGG---------TTAGCCTATGAA------CTAAAACAGAAAACTTCAAAATGAAAATGTTT-GAGGTTTATTTTGGAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3374866 74 + 3644372 ATGACAGGTGAAGG---------TTAGCCTATGAA------CTAAAACAGAAAACTTCAAAATGAAAATGTTT-GAGGTTTATTTTGGAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3327822 74 - 10304083 ATGACAGGTGAAGG---------TTAGCCTATGAA------CTAAAACAGAAAACTTCAAAATGAAAATGTTT-GAGGTTTATTTTGGAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3411942 75 - 107702431 ATGACAGGTGAAGG---------TTAGCCTATGAA------CTAAAACAGAAAACTTCAAAATGAAAATGTTTGGAGGTTTATTTTGGAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 935310 74 + 1565135 ATGACAGGTGAAGG---------TTAGCCTATGAA------CTAAAACAGAAAACTTCAAAATGAAAATGTTT-GAGGTTTATTTTGGAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318638 75 - 13651311 ATGACAGGTGAAGG---------TTAGCCTATGAA------CTAAAACAGAAAACTTCAAAATGAAAATGTTTTGAGGTTTATTTTGGAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403393 76 - 108792865 ATGACAGGCGAGGGTTAGCCTCGTTAGCCTGTGAA------GTAAAACAG--------AAAATGAAAATGTTTTCCAGTTTATTTTGGAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066565 76 - 7082604 ATGACAGGCGAGGGTTAGCCTCATTAGCCTGTGAA------CTAAAACAA--------AAAATGAAAATGTTTTCAAGTTTATTTTGGAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552782 74 + 5243153 ATGACAGGTGAGGGTTAGCCTCGTTAGCCTGTGAA------CTGAAAC----------AAAATGAAAATGTTTTCAAGTTGATTTTGGAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886395 76 - 1938448 ATGGCAGGCGAGGGTTAGCCTCGTTAGCCTGTGAA------CTAAAACAG--------AAAATGAAAATGTTTTCAAGTTTATTTTGGAG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2609195 67 - 159902609 GTCAGGAGGGAAAG---------TTAGCCTGTGAA------GTTAAAAAG--------AAAATGGGATTTTTTTAAAGTTTGTTTTGGAG i micMur3.chr8 C 0 I 97 s otoGar3.GL873658 2493412 73 + 5252280 GTCAGAGATAAAAG---------TTAGCCTGTGAACTAAACATTAAAAAG--------GAAAATGAAATTTTTTAAAGTCTCTTTTAAAG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91392486 62 - 120129022 ATGTCAGGTGAAGG---------TTAGCATATGAA------CTAA-------------AAACAAAAAAGCTTTCTGAGTTTATGTTGGAG i mm10.chr12 I 175 C 0 s dasNov3.JH580157 507186 59 + 2232271 --GCCAGCAGTGAA---------TTAA-----AAA------CTAAATAAG---------AAATGAAAGATTTTTTAAGTTTATTTTGGAG i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920154 357 + 1238772 I a score=674938.000000 s hg38.chr2_KI270769v1_alt 11796 70 + 120616 TAGCGCGTGGCTCAGTCCCA-GCT-------CAGAGGCAA-CTGTCTTTTGTGTGAAAACAGTAA---TATGTAAATCACTT s panTro5.chr2A 3449130 70 + 111504155 TAGCGCGTGGCTCAGTCCCA-GCT-------CAGAGGCAA-CTGTCTTTTGTGTGAAAACAGTAA---TATGTAAATCACTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335879 70 + 114371477 TAGCGCGTGGCTCAGTCCCA-GCT-------CAGAGGCAA-CTGTCTTTTGTGTGAAAACAGTAA---TATGTAAATCACTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209513 70 + 637652 TAGCGCGTGGCTCAGTCCCA-GCT-------CAGAGGCAA-CTGTCTTTTGTGTGAAAACAGTAA---TATGTAAATCACTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3008939 70 + 81552678 TAGCGCGTGGCTCAGTCCCA-GCT-------CAAAGGCAA-CTGTCTTTTGTGTGAAAACAGTGA---TATGTAAATCACTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266877 70 + 108979918 CAGGACGTGGCTCAGTCCCC-GCT-------CAGAAGCGA-CTGTCTTTTGTGTGAAAACGGTGA---TATGTAAATCACTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4979967 70 - 111193037 CAGGACGTGGCTCAGTCCCC-GCT-------CAGAAGCGA-CTGTCTTGTGTGTGAAAACGGTGA---TATGTAAATCACTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3374940 70 + 3644372 CAGGACGTGGCTCAGTCCCC-GCT-------CAGAAGCGA-CTGTCTTGTGTGTGAAAACGGTGA---TATGTAAATCACTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3327896 70 - 10304083 CAGGACGTGGCTCAGTCCCC-GCT-------GAGAAGCGA-CTGTCTTTTGTGTGAAAACGGTGA---TATGTAAATCACTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3412017 70 - 107702431 TAGCACGCGGCTCAGTCCCC-GCT-------CACAAGTGA-CTGTCTTGTGTGTGAAAACAGTGA---TATGTTAATCACTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 935384 70 + 1565135 CAGGACGTGGCTCAGTCCCC-GCT-------CAGAAGCGA-CTGTCTTTTGTGTGAAAACGGTGA---TATGTAAGTCACTT i manLeu1.NW_012104432v1 C 0 I 40 s colAng1.NW_012118821v1 3318713 70 - 13651311 TAGCAGGTGACTCAGTCCCC-GCT-------CAGAAGCGA-CTGTCTTTTGTGTGAAAACGGTGA---TACGTAAATCACTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403469 72 - 108792865 TAGCACATGGCTCAGTCTCA-GCT-------CAGAGGTGA-TTGTCTT-TGTGTCAAAACAGTGATACTACGTAAATCGCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066641 68 - 7082604 -AGCACCTGGCTCAGTCTCA-GCT-------CAGAGGTGA-CTGTCTT-TGTGTTAAAACAGTGA---TATATAAATCACTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552856 68 + 5243153 -AGCACATGGCTCAGTCTCA-GCT-------CAGAGGTGA-CTGTCTT-TGTGTTAAAACAGTGA---TACATAAATTGCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886471 69 - 1938448 TAGCACATGGCTCATTCTCA-GCT-------CAGAGGTGA-CTGTCTT-TGTGTTAAAACAGTGA---TACGTAAATCACTT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493485 71 + 5252280 AAACATACGGTTCAGTTTCG-ACT-------GAGAGGTGACCCACCTCCTGTGTTACAACTATGG---GACACAAGTCACTT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91392548 71 - 120129022 ACACCCATTGTGGAGTGTCA-GCTGGCCAGGCTGGGGTTA-C-ACCTTTCACATCAGGTAAGAAA---GCCTTAGCT----- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 507245 71 + 2232271 AAGCACATGGTTTAATCCCATGCT-------TAGAGGTGA-TCATCTTTTGGATTATAACAATGA---TATGTAAATCACTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2609262 97 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920154 357 + 1238772 I a score=19681.000000 s hg38.chr2_KI270769v1_alt 11866 9 + 120616 ACTTGCAAG s panTro5.chr2A 3449200 9 + 111504155 ACTTGCAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335949 9 + 114371477 ACTTGCAAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209583 9 + 637652 ACTTGCAAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009009 9 + 81552678 ACTTGCACG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266947 9 + 108979918 TACTGCACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4980037 9 - 111193037 TACTGCACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3375010 9 + 3644372 TACTGCACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3327966 9 - 10304083 TACTGCACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3412087 9 - 107702431 CGCTGCACA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3318783 9 - 13651311 CGCTGCACA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403541 9 - 108792865 AGTCACACA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066709 9 - 7082604 AGTTGCACA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552924 8 + 5243153 AGTCGCAC- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886540 9 - 1938448 AGTCACACA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493556 9 + 5252280 AGTGGCACA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91392619 7 - 120129022 GCTTGAG-- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 507316 8 + 2232271 AGTTGCAG- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2609262 97 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920154 357 + 1238772 I e manLeu1.NW_012104432v1 935454 40 + 1565135 I a score=161125.000000 s hg38.chr2_KI270769v1_alt 11875 16 + 120616 AAGAC--TACAGTGAAGT s panTro5.chr2A 3449209 16 + 111504155 AAGAC--TACAGTGAAGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335958 16 + 114371477 AAGAC--TACAGTGAAGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209592 16 + 637652 AAGAC--TACAGTGAAGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009018 16 + 81552678 AAGAC--TACAGTGAAAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266956 16 + 108979918 AAGAC--TACAGTGAAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4980046 16 - 111193037 AAGAC--TACAGTGAAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3375019 16 + 3644372 AAGAC--TACAGTGAAAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3327975 16 - 10304083 AAGAC--TACAGTGAAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3412096 16 - 107702431 AAGAC--TAGAGTGAAAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 935494 16 + 1565135 AAGAC--TACAGTGAAAT i manLeu1.NW_012104432v1 I 40 C 0 s colAng1.NW_012118821v1 3318792 16 - 13651311 AAGAC--TACAGTGAAAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403550 18 - 108792865 AAGACTTTACAGTGAAAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066718 18 - 7082604 AAGACTTTACAGTGAAAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 552932 17 + 5243153 -AGACTTTACAGTGAAAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886549 18 - 1938448 AAGACTTTACAGTGAAAT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493565 18 + 5252280 AAGCCTTCGTGGTAAAAC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91392626 16 - 120129022 CAGTT--GACGGTGCAGT i mm10.chr12 C 0 C 0 s dasNov3.JH580157 507324 18 + 2232271 AAGACTTTAGAATAAGAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2609262 97 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920154 357 + 1238772 I a score=534508.000000 s hg38.chr2_KI270769v1_alt 11891 46 + 120616 TCAGAAGAAAATAA-TCCCAGT-TC-CTTTTTTGTTACATCACCTCTGC s panTro5.chr2A 3449225 46 + 111504155 TCAGAAGAAAATAA-TCCCAGT-TC-CTTTTTTGTTACATCACCTCTGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3335974 46 + 114371477 TCAGAAGAAAATAA-TCCCAGT-TC-CTTTTTTGTTACATCACCTCTGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209608 46 + 637652 TCAGAAGAAAATAA-TCCCAGT-TC-CTTTTTGGTTACATCACCTCTGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009034 46 + 81552678 TCAGAAGAAAATAA-TCCCAGT-TC-CTTTTTTGTTGCATCACCTCTGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3266972 47 + 108979918 TCAGAAGAAAATAA-TTCCAGTATC-CTTTTGTGTTCCATCACCTCTGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4980062 47 - 111193037 TCAGAAGAAAATAA-TTCCAGTATC-CTTTTGTGTTCCATCGCCTCTGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3375035 47 + 3644372 TCAGAAGAAAATAA-TTCCAGTATC-CTTTTGTGTTCCATCACCTCTGC i macNem1.NW_012011978v1 C 0 M 838 s cerAty1.NW_012000820v1 3327991 47 - 10304083 TCAGAAGAAAATAA-TTCCAGTATC-CTTTTGTGTTCCATCACCTCTGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3412112 46 - 107702431 TCAGAAGAAAATAA-TTCCAGT-TC-CTTTTGTGTTCCATCACCTCTGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 935510 47 + 1565135 TCAGAAGAAAATAA-TTCCAGTATC-CTTTTGTGTTCCATCACCTCTGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318808 46 - 13651311 TCAGAAGAAAATAA-TTCCAGT-TC-CTTTTGTGTTCCATCACCTCTGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403568 46 - 108792865 TCGGGATAAGACAG-TCCCAGT-TC-CTTTCTTATTCCATCACCTCTGC i calJac3.chr14 C 0 I 6 s saiBol1.JH378218 3066736 46 - 7082604 TCAGGATAAGACAA-TCCCAGT-TC-CTTTTTTATTACCTCACCTCTGC i saiBol1.JH378218 C 0 I 6 s cebCap1.NW_016107454v1 552949 46 + 5243153 TCAGGATAAGACAA-TCCCAGT-TC-CTTTTTTATTACATCACCTCTGC i cebCap1.NW_016107454v1 C 0 I 6 s aotNan1.NW_018507213v1 1886567 46 - 1938448 GCAGAATAAGACAA-TCCCAGT-TC-CTTTTTTATTACATCACCTCTGC i aotNan1.NW_018507213v1 C 0 I 6 s micMur3.chr8 2609359 45 - 159902609 TCAGAATAAAATAA-TCCTAGT-TC-TTTTTTTGTCACATCGCCTCTA- i micMur3.chr8 I 97 I 6 s proCoq1.NW_012151163v1 920511 46 + 1238772 TCAGAATAAAATAA-TCCTAGT-TC-CTTTTTTGTTACATCATCTCTAC i proCoq1.NW_012151163v1 I 357 I 6 s otoGar3.GL873658 2493583 37 + 5252280 -----TCATGATAA-CCCTGGT-GT-CTTTTT----ACATCACATCTGC i otoGar3.GL873658 C 0 I 6 s mm10.chr12 91392642 44 - 120129022 GCAGAGTGAGATAAGCCCCAGT-----CTCAGACTGGCATCAGGTCCAC i mm10.chr12 C 0 C 0 s dasNov3.JH580157 507342 47 + 2232271 TCAATAAAATAAAC-CCGCGGT-TCTTTTTTTTATTACATCACTCCTAC i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I a score=85537.000000 s hg38.chr2_KI270769v1_alt 11937 10 + 120616 ------------CTCTGTATTT s panTro5.chr2A 3449271 10 + 111504155 ------------CTCTGTATTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336020 10 + 114371477 ------------CTCTGTATTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209654 10 + 637652 ------------CTCTGTATTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009080 10 + 81552678 ------------CTGTGTATTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3267019 10 + 108979918 ------------CTCTGTATTT i rheMac8.chr13 C 0 I 307 s macFas5.chr13 4980109 10 - 111193037 ------------CTCTGTATTT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3328038 10 - 10304083 ------------CTCTGTATTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3412158 10 - 107702431 ------------CTCTGTATTT i chlSab2.chr14 C 0 I 308 s manLeu1.NW_012104432v1 935557 10 + 1565135 ------------CTCTGTGTTT i manLeu1.NW_012104432v1 C 0 I 6762 s colAng1.NW_012118821v1 3318854 10 - 13651311 ------------CTCTGTATTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403620 10 - 108792865 ------------TTCGGCATTT i calJac3.chr14 I 6 C 0 s saiBol1.JH378218 3066788 10 - 7082604 ------------TTCGGTATTT i saiBol1.JH378218 I 6 C 0 s cebCap1.NW_016107454v1 553001 10 + 5243153 ------------TTCGGTATTT i cebCap1.NW_016107454v1 I 6 C 0 s aotNan1.NW_018507213v1 1886619 10 - 1938448 ------------TTCGGTCTTT i aotNan1.NW_018507213v1 I 6 C 0 s micMur3.chr8 2609410 10 - 159902609 ------------GCCAGTATCT i micMur3.chr8 I 6 C 0 s proCoq1.NW_012151163v1 920563 10 + 1238772 ------------GTCAGTATCT i proCoq1.NW_012151163v1 I 6 C 0 s otoGar3.GL873658 2493626 10 + 5252280 ------------CTCAGTATCT i otoGar3.GL873658 I 6 C 0 s mm10.chr12 91392686 4 - 120129022 ------------------ATTC i mm10.chr12 C 0 I 11 s dasNov3.JH580157 507389 22 + 2232271 CGTTAATTCAGTAGCAGTATTT i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I e macNem1.NW_012011978v1 3375082 838 + 3644372 M a score=53580.000000 s hg38.chr2_KI270769v1_alt 11947 3 + 120616 GAA s panTro5.chr2A 3449281 3 + 111504155 GAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336030 3 + 114371477 GAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209664 3 + 637652 GAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009090 3 + 81552678 GAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3267336 3 + 108979918 gaa i rheMac8.chr13 I 307 C 0 s macFas5.chr13 4980119 3 - 111193037 GAA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3328048 3 - 10304083 GAA i cerAty1.NW_012000820v1 C 0 I 439 s chlSab2.chr14 3412476 3 - 107702431 gaa i chlSab2.chr14 I 308 C 0 s manLeu1.NW_012104432v1 942329 3 + 1565135 GAA i manLeu1.NW_012104432v1 I 6762 C 0 s colAng1.NW_012118821v1 3318864 3 - 13651311 GAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403630 3 - 108792865 GAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066798 3 - 7082604 GAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553011 3 + 5243153 GAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886629 3 - 1938448 GAA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2609420 3 - 159902609 GAA i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 920573 3 + 1238772 GAA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2493636 3 + 5252280 GAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91392701 3 - 120129022 GAA i mm10.chr12 I 11 C 0 s dasNov3.JH580157 507411 3 + 2232271 GAA i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I e macNem1.NW_012011978v1 3375082 838 + 3644372 M a score=45160.000000 s hg38.chr2_KI270769v1_alt 11950 3 + 120616 AGT s panTro5.chr2A 3449284 3 + 111504155 AGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336033 3 + 114371477 AGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209667 3 + 637652 GGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009093 3 + 81552678 AGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3267339 3 + 108979918 aGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4980122 3 - 111193037 AGT i macFas5.chr13 C 0 I 307 s cerAty1.NW_012000820v1 3328490 3 - 10304083 AGT i cerAty1.NW_012000820v1 I 439 C 0 s chlSab2.chr14 3412479 3 - 107702431 aGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 942332 3 + 1565135 AGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3318867 3 - 13651311 AGT i colAng1.NW_012118821v1 C 0 I 307 s calJac3.chr14 3403633 3 - 108792865 AGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066801 3 - 7082604 AGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553014 3 + 5243153 AGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886632 3 - 1938448 AGT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2609423 3 - 159902609 AGT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 920576 3 + 1238772 AGT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2493639 3 + 5252280 AGT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91392704 3 - 120129022 AGG i mm10.chr12 C 0 I 4 s dasNov3.JH580157 507414 3 + 2232271 AGT i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I e macNem1.NW_012011978v1 3375082 838 + 3644372 M a score=331699.000000 s hg38.chr2_KI270769v1_alt 11953 29 + 120616 --GAGGTATA-GCCTGTCCCCATTCTGCCAGA s panTro5.chr2A 3449287 29 + 111504155 --GAGGTATA-GCCTGTCCCCATTCTGCCAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336036 29 + 114371477 --GAGGTATA-GCCTGTCCCCATTCTGCCAGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209670 29 + 637652 --GAGGTATA-GCCTGTCCCCATTCTGCCAGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009096 29 + 81552678 --GAGGTATT-GCCTGTCCCCGTTCTGCCGGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3267342 29 + 108979918 --GAGGTATA-GCCTGTCCGCATTCTGCCAGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4980432 29 - 111193037 --GAGGTATA-GCCTGTCCGCATTCTGCCAGA i macFas5.chr13 I 307 C 0 s cerAty1.NW_012000820v1 3328493 29 - 10304083 --GAGGTATA-GCCTGTCCGCATTCTGCCAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3412482 29 - 107702431 --GAGGTATA-GCCTGTCCGCATTCTGCCAGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 942335 29 + 1565135 --GAGGTATA-GCCCGTCCGCATTCTGCCAGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3319177 29 - 13651311 --GAGGTATA-GCCTGTCCGCATTCTGCCAGA i colAng1.NW_012118821v1 I 307 C 0 s calJac3.chr14 3403636 29 - 108792865 --GAGGTCTA-GCCTGTCCCCATTCAGCCAGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066804 29 - 7082604 --GAGGTCTA-GCCTGTCCCTCTTCTGCCAGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553017 29 + 5243153 --GAGGTCTA-GCCTGTCCCCATTCTGCCAGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886635 29 - 1938448 --GAGGTCTA-GCCTGTCCCTATTCTGCCAGG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2609426 29 - 159902609 --CAGGTGTA-TCCTGTCCTCATTCTGCCAGA i micMur3.chr8 C 0 I 435 s proCoq1.NW_012151163v1 920579 30 + 1238772 --CAGGTGTATTCCTGTCCTCATTCTGCCAGA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2493642 29 + 5252280 --TAGGTTTATGCCTGTCCTCA-TCCGCCAGC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91392711 28 - 120129022 --TAAACCTC-ACATGTCCTTA-CCTGGCAGA i mm10.chr12 I 4 C 0 s dasNov3.JH580157 507417 28 + 2232271 TAGGAAGAAA-GCCTATC---GTTCTGCCAGA i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I e macNem1.NW_012011978v1 3375082 838 + 3644372 M a score=1249466.000000 s hg38.chr2_KI270769v1_alt 11982 125 + 120616 AATGACTGATGTTTGTGAGGCTGAAATCCTGAG--------CCAGGAGAGGAGTGATTTCTTGATCTTTAACAGGAGCATTTAACAAAGTAACA---AAATT-TTT-TCCTTAATTGACTAGTTCTCTTGAATT-CAGA s panTro5.chr2A 3449316 125 + 111504155 AATGACTGATGTTTGTGAGGCTGAAATGCTGAG--------CCAGGAGAGGAGTGATTTCTTGATCTTTAACAGTAGCATTTAACAAAGTAACA---AAATT-TTT-TCCTTAATTGACTAGTTCTCTTGAATT-CAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336065 125 + 114371477 AATGACTGATGTTTGTGAGGCTGAAATGCTGAG--------CCAGGAGAGGAGTGATTTCTTGATCTTTAACAGTAGCATTTAACAAAGTAACA---AAATT-TTT-TCCTTAATTGACTAGTTCTCTTGAATT-CAGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209699 125 + 637652 AATGACTGATGTTTGTGAGGCTGAAATCCTGAG--------CCAGGAGAGGAGTGATTTCTTGATCTTTAACAGTAGCATTTAACAAAGTAACA---AAATT-TTT-TCCTTAATTGACTAGTTCTCTTGAATT-CAGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009125 125 + 81552678 AATGACTGATGTTTATGAGGCCGAAATCCTGAG--------CCAGGAGGGGAGTGATTTCTTGATCTTTAACAGTAGCATTTAACAAAGTAACA---AAATC-TTT-TCCCTAATTGACTAGTTCTCTTGAATT-CAGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3267371 133 + 108979918 AATGACTGATGTTCGTGAGGCCGAAATCCTGAGGCAGAACCACAGGAGAGGAGTGATTTCTTGATCTTCAGCAATAGCCTTTAGCAAAGTAACA---AAATT-TTT-TCCTTAATTGACTAGTTCTCTTGAATT-CAGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4980461 133 - 111193037 AATGACTGATGTTCGTGAGGCCGAAATCCTGAGGCAGAACCACAGGAGACGAGTGATTTCTTGATCTTCAGCAATAGCCTTTAGCAAAGTAACA---AAATT-TTT-TCCTTAATTGACTAGTTCTCTTGAATT-CAGA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3328522 133 - 10304083 GATGACTGATGTTCGTGAGGCCGAAATCCTGAGGCAGAACCACAGGAGAGGAGTGATTTCTTGATCTTCAGCAATAGTCTTTAGCAAAGTAACA---AAATT-TTT-TCCTTAATTGACTAGTTCTCTTGAATT-CAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3412511 133 - 107702431 AATGACTGATGTTCGTGAGGCCGAAATCCTGAGGCAGAACCACAGGAGAGGAGTGATTTCTTGATCTTCAGCAATAGTCTTTAGCAAAGTAACA---AAATT-TTT-TCCTTAATTGACTAGTTCCCTTGAATT-CAGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 942364 133 + 1565135 AATGACTGATGTTCGTGAGGCCGAAATCCTGAGGCAGAACCACAGGAGAGGAGTGATTTCTTGATCTTCAGCAATAGCCTTTAGCAAAGTAACA---AAATT-TTT-TCCTTAATTGACTAGTTCTCTTGAATT-CAGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3319206 133 - 13651311 AATGACTGATGTTTGTGAGGCGGAAATCCTGAGGCAGAACCACAGGAGAGGAGTGATTTCTTGATCTTCAGCAATAGCATTTAGCAAAGTAACA---AAATT-TTT-TCCTTAATTGATTAGTTCTCTTGAATT-CAGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403665 126 - 108792865 AATTAT-GGTGTTTGTGAAG------TCCTGAGCCAGAACCACAGGAGAGGAGTGGTTTCTTCTGCGTTAACAGTAGCATTTAGCAAAGTAACC---ACACT-TCT-TTCTTAATCGACTGGTTCTCTTGAATT-CAGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066833 126 - 7082604 AATTATGGGTGTTTGTGAAG------TCCTGAGCCAGAACCACAGGAGAGGAGTGGTTTCTTCTTCTTTAACA-TAGCATTTAGCAAAGTAACA---GCACT-TTT-TTCTTAATTGACTAGTTCTCTTGAATT-CAGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553046 127 + 5243153 AATTATGGGTGTTTGTGAAG------TCCTGAGCCAGAACCACAGGAGA-GAGTGGCTTCTTCCTCTTTAACAGCAGCATTTAGCAAAGTAACA---ACACG-TTT-TTCTTAATTGACTAGTTCTCTTGAATTCCAGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886664 127 - 1938448 AATTATGGGTGTTTGTGAAG------TCCTGAGCCAGAACCACAGGAGAGGAGTGGTTTCTTCCTCTTTAACAATAGCATTTAGCAAAGTAACA---ACAGT-TTT-TTCTTAATTGACTAGTTCTCTTGAATT-CAGA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 920609 134 + 1238772 GATCACTGATGTTTGTGAGGCCAAAGTCTTAAACCAGAACCACAGGAGGGCAGTTGTGTCTTGATCTCTAGCAGTAACATTCAGCAAAGTAACG---AAGTT-CCTGTTCGTAATTGACTAGTTCTCTTGAATT-CAGG i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2493671 132 + 5252280 GTTAACTGATGAGGTTCAAGGCAAAGTCTTGAACCAGATACACCGGTAAGGAGTTTCTTCAGGATGCCTCACAGTAACACTTAGCAGAATAACA---GCATT-CC--TTTGTAATGGATCAGTTCTCTTGAATT-CACA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91392739 115 - 120129022 GGTGACAAGAGTTTGAGAGG----TGCCCTGAGTCACAACTCAGGGATAGTAG----------ATGTCTAAT-------CTTAACAGAGCCGTGTGTGGATT-TTC-TCCTTCATTGACAGGTTGTCTTGAATC-CAGA i mm10.chr12 C 0 I 374 s dasNov3.JH580157 507445 132 + 2232271 -ATTAATGATGTTTGTTGGACTAACGTCCTGAA-CAAAACTGCAGGAAAGGAGTTATTTGTTGATCTTTAATAGTAACATTTAGCAAAGTAATA---AGGTTCTTT-TTCCTAATTAACTACTTCTCTGGAATT-CAAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2609455 435 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e macNem1.NW_012011978v1 3375082 838 + 3644372 M a score=638420.000000 s hg38.chr2_KI270769v1_alt 12107 58 + 120616 CAAATCCTT---ATTATG--------TGTGGTCTTGTGACTTCTGTGACACTTTAGAAGCTTTCCTGGG s panTro5.chr2A 3449441 58 + 111504155 CAAATCCTT---ATTATG--------TGTGGTTTTGTGACTTCTGTGACACTTTAGAAGCTTTCCTGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336190 58 + 114371477 CAAATCCTT---ATTATG--------TGTGGTTTTGTGACTTCTGTGACACTTTAGAAGCTTTCCTGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209824 58 + 637652 CAAATCCTT---ATTATG--------TGTGGTTTTGTGACTTCTGTGACACTTTAGAAGCTTTCCTGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009250 58 + 81552678 CACATCCTT---ATTATG--------TGTGGTTTTGTGACTTCTATGACACTTCAGAAGCTTTCCTGGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3267504 58 + 108979918 CACATCCTT---ATTATG--------TGTGGTTTTGTGACTTCTGTGCCACTTGAGAAGCTTTCCTGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4980594 58 - 111193037 CACATCCTT---ATTATG--------TGTGGTTTTGTGACTTCTGTGCCACTTGAGAAGCTTTCCTGGG i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3328655 58 - 10304083 CACATCCTT---ATTATG--------TGTGGTTTTGTGACTTCTGTGCCACTTGAGAAGCTTTCCTGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3412644 58 - 107702431 CTCATCCTT---ATTATG--------TGTGGTTTTGTGACTTCTGTGCCACTTGAGAAGCTTTCCTGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 942497 58 + 1565135 CACATCCTT---ATTTTG--------TGTGGTTTTGTGACTTCTGTGCCACTTGAGAAGCTTTCCTGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3319339 58 - 13651311 CACATCCTT---ATTATG--------TGTGGTTTTGTGACTTCTGTGCCACTTGAGATGCTTTCCTGGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403791 58 - 108792865 CACATCCTT---ATTATG--------TGTGGTTTTGTGACTTCGGTGCCACTTTGGGAGCTTTTCTGGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3066959 58 - 7082604 TGCATCCTT---ATTATG--------TGTGGTTTTGCGACTTCTGTGCCACTTTAGAAGCTTTCCTGGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553173 58 + 5243153 TGCATCCTT---ATTATG--------TGTGATTTTGTGACTTCTGTGCCACTTTAGAAGCTTTCCTGGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886791 58 - 1938448 CGCATCCTT---ATTATG--------TGTGGTTTTGTGACTTCTGTGCTACTTTAGAAGCTTTCCTGGG i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 920743 57 + 1238772 C--ATCCTC---ATAACTG-------TGTGGTGTTGTGACTTCTGTACCACTTTAGGAGCTTTCCTGGG i proCoq1.NW_012151163v1 C 0 I 229 s otoGar3.GL873658 2493803 64 + 5252280 C--GTCCTC---ATTATCACCATTATCGTGGTTCTGTGACTTCTGTACCACTTCAGCAGCTTTTCTGGG i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 507577 59 + 2232271 --TATCCTTGTAATTATG--------TGTAGCTCTGCAGTTTCTGTTCTACTTTAGAAGCTATCAAGGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2609455 435 - 159902609 I e mm10.chr12 91392854 374 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e macNem1.NW_012011978v1 3375082 838 + 3644372 M a score=425330.000000 s hg38.chr2_KI270769v1_alt 12165 49 + 120616 TTCAGTAT--GGATTGGGGACTGCCTGCTACGCTGACCGGGCCACCTGGAA s panTro5.chr2A 3449499 49 + 111504155 TTCAGTAT--GGATTGGGGGCTGCCTGCTACGCTGACCGGGCCACCTGGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336248 49 + 114371477 TTCAGTAT--GGATTGGGGGCTGCCTGCTACGCTGACCGGGCCACCTGGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209882 49 + 637652 TTCAGTAT--GGATTGGGGGCTGCCTGCTACGCTGACCGGGCCACCTGGAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009308 49 + 81552678 TTCAGTAT--GGATTGGGGGCTGCCTGAGACGCTGACCAGGCCACCTGGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3267562 49 + 108979918 TTCAGTAT--GGGTTGGGGGCTGCCAGCTACACTGACCAGGCCACCTGGAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4980652 49 - 111193037 TTCAGTAT--GGGTTGGGGGCTGCCAGCTACACTGACCAGGCCACCTGGAA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3328713 49 - 10304083 TTCAGTAT--GGGTTGGGGGCTGCCAGCTACACTGACCAGGCCACCTGGAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3412702 49 - 107702431 TTCAGTAT--GGGTTGGGGGCTGCCAGCTACACTGACCAGGCCACCTGGAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 942555 49 + 1565135 TTCAGTAT--GGGTTGGGGGCTGCCAGCTACACTGACCAGGCCACCTGGAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3319397 49 - 13651311 TTCAGTAT--GGGTTGGGGGCTGCCTGCTGCACTGACCAGGCCACCTGGAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403849 49 - 108792865 TTCAGGAT--GGGTTGGGGGCTGCCTGCTGCACCGACTAGGCCGCCTGGAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3067017 49 - 7082604 TTCAGGAT--GGGTTGGGGGCTACCTGCTGCACCGACCAGGCCGCCTGGGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553231 49 + 5243153 TTCAGGGT--AGGTTGGGGGCTGCCTGCTGCACCGACCAGGCCGCCCGGAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886849 49 - 1938448 TTCAGGAT--GGGTTGGGGGCTGCCTGCTGCACCGACCAGGCCGCCTGGAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493867 40 + 5252280 -CTCGGAC--AAGCTGGG--------GCTGCCCCTGCAGTGCCAGCCTGAA i otoGar3.GL873658 C 0 I 1 s dasNov3.JH580157 507636 50 + 2232271 TTCAAGATACAGTCCCTAGCCTGCCTGTTATAAGGACTGGG-TGTCTACAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2609455 435 - 159902609 I e mm10.chr12 91392854 374 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920800 229 + 1238772 I e macNem1.NW_012011978v1 3375082 838 + 3644372 M a score=143671.000000 s hg38.chr2_KI270769v1_alt 12214 19 + 120616 CCCCTTT---------------------GCCTGGGGCCTG s panTro5.chr2A 3449548 19 + 111504155 CCCCTTT---------------------GCCTGGGGCCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336297 19 + 114371477 CCCCTTT---------------------GCCTGGGGCCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209931 19 + 637652 CCCCTTT---------------------GCCTGGGGCCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009357 19 + 81552678 CCCCTTT---------------------GCCTGGGGCCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3267611 19 + 108979918 CCCCTTC---------------------GCGTGGGGCCTG i rheMac8.chr13 C 0 I 510 s macFas5.chr13 4980701 19 - 111193037 CCCCTTC---------------------GCGTGGGGCCTG i macFas5.chr13 C 0 I 510 s macNem1.NW_012011978v1 3375954 19 + 3644372 CCCCTTC---------------------GCGTGGGGCCCC i macNem1.NW_012011978v1 M 838 C 0 s cerAty1.NW_012000820v1 3328762 19 - 10304083 CCCCTTC---------------------GCGTGGGGCCCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3412751 19 - 107702431 CCCCTTC---------------------GCGTGGCGCCCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 942604 19 + 1565135 CCCCTTC---------------------TCGTGGGGCCTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3319446 19 - 13651311 CCCCTTC---------------------GCGTGGGGCCCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403898 40 - 108792865 CCCCTTTgcctggggcctggggcctggggcctggggcctg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3067066 18 - 7082604 CCCCTT----------------------GCCTGGGGCCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553280 19 + 5243153 CCCCCTT---------------------GTCTGGGGCCTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886898 19 - 1938448 CCCCTTT---------------------GCCTGGGGCCTG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493908 17 + 5252280 CTCCTGT---------------------GCAGGGCGCA-- i otoGar3.GL873658 I 1 C 0 s dasNov3.JH580157 507686 15 + 2232271 CTCCTGCAAT------------------GTTTA------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2609455 435 - 159902609 I e mm10.chr12 91392854 374 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920800 229 + 1238772 I a score=109343.000000 s hg38.chr2_KI270769v1_alt 12233 12 + 120616 GCTCCCGGCTGT s panTro5.chr2A 3449567 12 + 111504155 GCTCCCGGCTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336316 12 + 114371477 GCTCCCGGCTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209950 12 + 637652 GCTCCCGGCTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009376 12 + 81552678 GCTCCCGGCTGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268140 12 + 108979918 GCTCCCGGCGGA i rheMac8.chr13 I 510 C 0 s macFas5.chr13 4981230 12 - 111193037 GCTCCCGGCGGA i macFas5.chr13 I 510 C 0 s macNem1.NW_012011978v1 3375973 12 + 3644372 GCTCCCGGCGGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3328781 12 - 10304083 GCTCCCGGCGGT i cerAty1.NW_012000820v1 C 0 I 136 s chlSab2.chr14 3412770 12 - 107702431 GCTCCCGGCTGT i chlSab2.chr14 C 0 I 296 s manLeu1.NW_012104432v1 942623 12 + 1565135 ACTCCCGGCTGT i manLeu1.NW_012104432v1 C 0 I 290 s colAng1.NW_012118821v1 3319465 12 - 13651311 GCTCCCGACAGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403938 12 - 108792865 gCGCCCGGCTGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3067084 12 - 7082604 GCGCCCGGCCGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553299 12 + 5243153 GCACCTGGCTGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886917 12 - 1938448 GTGCCCGGCTGT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493925 12 + 5252280 GCGGCCAGCTGT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 507701 12 + 2232271 GTTCTCAACAGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2609455 435 - 159902609 I e mm10.chr12 91392854 374 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920800 229 + 1238772 I a score=219161.000000 s hg38.chr2_KI270769v1_alt 12245 24 + 120616 -------GATG-----ACCCAGATCGCG-------------------------GTTGTGTG s panTro5.chr2A 3449579 24 + 111504155 -------GATG-----ACCCAGATCGCG-------------------------GTTGTGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336328 24 + 114371477 -------GATG-----ACCCAGATCGCG-------------------------GTTGTGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209962 24 + 637652 -------GATG-----ACCCAGATCGCG-------------------------GTTGTGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009388 24 + 81552678 -------GATG-----ACCCAGATCGCG-------------------------GCTGTGTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268152 24 + 108979918 -------GATG-----ACCCAGATTGCG-------------------------GTTGTGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981242 24 - 111193037 -------GATG-----ACCCAGATTGCG-------------------------GTTGTGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3375985 24 + 3644372 -------GATG-----ACCCAGATTGCG-------------------------GTTGTGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3328929 24 - 10304083 -------GATG-----ACCCAGATTGCG-------------------------GTTGTGTG i cerAty1.NW_012000820v1 I 136 C 0 s chlSab2.chr14 3413078 24 - 107702431 -------GATG-----ACCCAGATTGCG-------------------------GTTGTGTG i chlSab2.chr14 I 296 C 0 s manLeu1.NW_012104432v1 942925 24 + 1565135 -------GATG-----ACCCAGATTGCG-------------------------GTTGTGTG i manLeu1.NW_012104432v1 I 290 C 0 s colAng1.NW_012118821v1 3319477 24 - 13651311 -------GATG-----ACCCAGATTGCG-------------------------GTTGTGTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403950 24 - 108792865 -------GATG-----ACCCAGATCGAA-------------------------GATGTGTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3067096 24 - 7082604 -------GATG-----ACCCAGATTGCA-------------------------GATGTGTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553311 24 + 5243153 -------GATG-----ACCCAGATAGCA-------------------------GATGTGTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886929 24 - 1938448 -------GATG-----ACCCAGATCGCA-------------------------GATGTGGG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493937 29 + 5252280 -------GATGGGCACGGCCCGACGTCA-------------------------GGCACCTG i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 507713 56 + 2232271 GTCAAAATACA-----ATTCCAAGTGCAAAAACAATTAAAAAAAAAAAGTGTTGCTGTACA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2609455 435 - 159902609 I e mm10.chr12 91392854 374 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920800 229 + 1238772 I a score=1309016.000000 s hg38.chr2_KI270769v1_alt 12269 135 + 120616 AGGGCCTTTCCG-AAGCATGGGT-GGGGGCTGTACTCTGCTGTGA-GGTCGC--GCAGGGACATCGTGCCCTGGGTTCCTGGATtttct-agtccctctcttctgattttaaacttctctttgac----tttctactttctagtg s panTro5.chr2A 3449603 135 + 111504155 AGGGCCTTTCCG-AAGCATGGGC-GGGGGCTGTACTCTGCTGTGA-GGTCGC--GCAGGGACATCGTGCCCTGGGTTACTGGATtttct-agtccctctcttctgattttaaacttctctttgac----tttctactttctagtg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336352 135 + 114371477 AGGGCCTTTCCG-AAGCATGGGC-GGGGGCTGTACTCTGCTGTGA-GGTCGC--GCAGGGACATCGTGCCCTGGGTTCCTGGATtttct-agtccctctcttctgattttaaacttctctttgac----tttctactttctagtg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 209986 135 + 637652 AGGGCCTTTCCG-AAGCACGGGC-GGGGGCTGTACTCCGCTGTGA-GGTCGC--GCAGGGACATCGTGCCCTGGGTTCCTGGATtttct-agtccctctcttctgattttaaacttctctttgac----tttctactttctagtg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009412 134 + 81552678 AGGGCCTTTCGG-AAGCACAGGC--GGGGCTGCACTCCGCTGTGA-GGTTGC--GCAGGGACATCGTGCCCTGGGTTCCTGGATTTTCC-AGTCCCTGTCttctgattttaaacttctctttgac----tttctactttctaGTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268176 135 + 108979918 AGGGCCTGTCCG-AAGCACAGGC-GGGGGCTGCACTCCGCTGTGG-TGTCAC--ACAGTGACATCGTGCCCTAGGTTCCTGGATTTTCT-AGTCCCTCTCTTTTGATTTTAAACTTCTCTTTGAC----TTTCTGCTTTCCAGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981266 135 - 111193037 AGGGCCTGTCCG-AAGCACAGGC-GGGGGCTGCACTCCGCTGTGG-TGTCAG--GCAGGGACATCGTGCCCTAGGTTCCTGGATTTTCT-AGTCCCTCTCTTTTGATTTTAAACTTCTCTTTGAC----TTTCTGCTTTCCAGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376009 135 + 3644372 AGGGCCTGTCCG-AAGCACAGGC-GGGGGCTGCACTCCGCTGTGG-TGTCAC--ACAGTGACATCGTGCCCTAGGTTCCTGGATTTTCT-AGTCCCTCTCTTTTGATTTTAAACTTCTCTTTGAC----TTTCTGCTTTCCAGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3328953 135 - 10304083 AGGGCCTGTCCG-ATGCACAGGC-GGGGGCTGCACTCCGCTGTGG-TGTCAC--GCAGGGACATCGTGCCCTGGGTTCCTGGATTTTCT-AGTCCCTCTCTTTTGATTTTAAACTTCTCTTTGAC----TTTCTGCTTTCCAGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413102 135 - 107702431 AGGGCCTGTGGG-AAGCACAGGC-GGGGGCTGCACTCCGCTGTGG-TGTCAC--GCAGGGACATCGTGCCCTGGGTTCCTGGATTTTCT-AGTCCCTCTCTTTTGATTTTAAACTTCTCTTTGAC----TTTCTACTTTCCTGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 942949 135 + 1565135 AGGGCCTGTCCG-AAGCACAGGC-GGGGGCTGCACTCCGCTGTGG-TGTCAC--GCAGGGACATCTTGCCCTAGGTTCCTGGATTTTCT-AGTCCCTCTCTTTTGATTTTAAACTTCTCTTTGAC----TTTCTGCTTTCCAGTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3319501 135 - 13651311 AGGGCCTTTGGG-AAGCACAGGT-GGGGACTGCACTCCGCTGTGA-TGTCAC--GCAGGGACATCATGCCCTGGGTTCCTGGATTTTCT-AGTCTCTCTCTTTTGATTTTAAACTTCTCTTTGAC----TTTCTACTTTCCAGTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3403974 135 - 108792865 AGGGCCTTTCGG-AAGCACAGGT-GGGGGCCGTGCTCCACTGTGA-CGTCGT--GCGGGGACACTGTGCCCTGGGCTCCTGGATTTTCT-TGTCCCTCTCTTTTGACTTTAAACTTGGCTTTGAC----TTTCCACTTTCTAGTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3067120 135 - 7082604 AGGGCCTTTTGG-AAGCACAGGT-GGGGGCCATGCTCCACTGTGA-TGTCGT--GCAGGGACATCGTGCCCTGGGTTTCTGGATTTTTC-AGTCCCTCTCTTTTGATTTTAAACTTCACTTTGAC----TTTCCACTTTCTAGTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553335 135 + 5243153 AGGGCCTTTTGG-AAGCACAGGCGGGGGGCCGTGCTGCACTGTGA-TGCCGT--GCGGGGACGTCGTGCCCTGGGTGCCTGGATTTTCT-AGTCCCTCTCGTTTGATTTTAAACTTCGCTTTGAC-----TTCCACTTTCTAGCG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1886953 135 - 1938448 AGGGCCTTTCGG-AAGCACAGGT-GGGGGCCATGCTCCACTGTGA-TGTCGT--GCAGGGACATCATGCCCTGGGTTCCTGGATTTTCT-AGTCCCTTTCTTTGGATTTTAAACTTCGCTTTGAC----TTTCCACTTTCTAGTG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2493966 103 + 5252280 CAGGCCTCT---------------CAGGATTGCTGCCCACTGGAA-GGCCAA--GTGGA-------------------CGGAGTTTCCT-CGGCACTCTCTT-TGATTTCAGACCT---TCAGACCCAACTTCCATTTTCTTCCA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91393228 114 - 120129022 AAGGCCTTTCAG-ACAGCTATGC-CAAGAC----ATCCTCTGTGG-TGGCATCAGCCAGGACTTC-CACTCTTGGTGCCTG---------ATTCCCACCCCGCTG----------CCTCTGCAGC----AGTTTATATCCCGGTG i mm10.chr12 I 374 I 2 s dasNov3.JH580157 507769 131 + 2232271 AAGGTCTTTCAGTAAGTATAAGT----GGCAGTATTCCACTTTGATTTTCAA--GCAAGGATATCCCTCCATAGGTTACTGAATTTCATAAATCCCTCTTGTTTTTATTTAAA----TACTTCAC----CTTTCATTTTCCAATG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2609455 435 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 920800 229 + 1238772 I a score=67765.000000 s hg38.chr2_KI270769v1_alt 12404 6 + 120616 -ttctaT s panTro5.chr2A 3449738 6 + 111504155 -ttctaT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336487 6 + 114371477 -ttctaT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210121 6 + 637652 -ttctaT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009546 6 + 81552678 -TTTTAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268311 6 + 108979918 -TTCTAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981401 6 - 111193037 -TTCTAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376144 6 + 3644372 -TTCTAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329088 6 - 10304083 -TTCTAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413237 6 - 107702431 -TTCTAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943084 6 + 1565135 -TTCTAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3319636 6 - 13651311 -TTCTAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404109 6 - 108792865 -CTCTGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3067255 6 - 7082604 -TTCTAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553470 6 + 5243153 -TTCTGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887088 6 - 1938448 -TTCTAT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 921029 6 + 1238772 -TTCTGT i proCoq1.NW_012151163v1 I 229 C 0 s otoGar3.GL873658 2494069 6 + 5252280 -TTCTGT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91393344 4 - 120129022 -TTCT-- i mm10.chr12 I 2 C 0 s dasNov3.JH580157 507900 5 + 2232271 TTTTT-- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2609455 435 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I a score=1882824.000000 s hg38.chr2_KI270769v1_alt 12410 134 + 120616 TGTCAGCAGATCT----CTTGCTTCCTAAGAGAGCCTAAAGG---AA--AAAATATAGAATCCT-CCCCATTTTACTCAAAAGTCAGTTTCTTATA--TTCTT----CTCGA-TCTTGATTTTTAACTTCCTTTGATCCCTGATCTTTTTC s panTro5.chr2A 3449744 134 + 111504155 TGTCAGCAGATCT----CTTGCTTCCTAAGAGAGCCTAAAGG---AA--AAAAAATAGAATCCT-CCCCATTTTACTCAAAAGTCAGTTTCTTATA--TTCTT----CTCGA-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336493 134 + 114371477 TGTCAGCAGATCT----CTTGCTTCCTAAGAGAGCCTAAAGG---AA--AAAAAATAGAATCCT-CCCCATTTTACTCAAAAGTCAGTTTCTTATA--TTCTT----CTCGA-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210127 134 + 637652 TGTCAGCAGATCT----CTTGCTTCCTGAGAGAGCCTAAAGG---AA--AAAAAATAGAATCCT-CCCCATTTTACTCAAAAGTCAGTTTCTTATA--TTCTT----CTCTA-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009552 135 + 81552678 TGTCAGCAGATCT----CTTGCTTCCTAAGACAGCCTAAAGG-A-AA--AAAAAATAGAATCCT-CCCCATTTTACTCAAAAGTCAGTTTCTTATA--TTCTT----CTTGA-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268317 133 + 108979918 TGTCAGCAGATCT----CTTGCTTCCTAAGAGAGCCTAAAGG-A-AA--AAAAACTAGAGTCCT-CCCCATTTTACTC--AAGTTAGTTTCTTATA--TTCTT----CTCAG-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981407 133 - 111193037 TGTCAGCAGATCT----CTTGCTTCCTAAGAGAGCCTAAAGG-A-AA--AAAAACTAGAGTCCT-CCCCATTTTACTC--AAGTTAGTTTCTTATA--TTCTT----CTCAG-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376150 133 + 3644372 TGTCAGCAGATCT----CTTGCTTCCTAAGAGAGCCTAAAGG-A-AA--AAAAACTAGAGTCCT-CCCCATTTTACTC--AAGTTAGTTTCTTATA--TTCTT----CTCAG-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329094 135 - 10304083 TGTCAGCAGATCT----CTTGCTTCCTAAGAGAGCCTAAAGG-A-AA--AAAAACTAGAGTCCT-CCCCATTTTACTCAAAAGTTAGTTTCTTATA--TTCTT----CTCAG-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413243 135 - 107702431 TGTCAGCAGATCT----CTTGCTTCCTAAGAGAGCCTAAAGG-A-AA--AAAAACTAGAGTTCT-CCCCATTTTACTCAAAAGTTAGTTTCTTATA--TTCTT----CTCAG-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943090 135 + 1565135 TGTCAGCAGATCT----CTTGCTTCCTAAGAGAGCCTAAAGG-A-AA--AAAAACTAGAGTCCT-CCCCATTTTACTCAAAAGTTAGTTTCTTATA--TTCTT----CTCAG-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3319642 135 - 13651311 TGTCAGCAGATCT----CTTGCTTCCTAAGACAGCCTAAAGG-A-AA--AAAAAATAGAGTCCT-CCCCATTTTACTCAAAAGTTAGTTTCTTATA--TTCTT----CTCAG-TCTTGATTGTTAACTTCCTTTGATCCCTGGTCTTTTTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404115 137 - 108792865 TGTCAGCAGCTCT----CTTCCTTCCTAAGAGAACCTAAAGG-G-AA--AAAAATTGGAATCCT-CCCCATTTTACTCAAAAGTTAGTTTCTTATATCTTCTT----CTCAG-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3067261 138 - 7082604 TGTCAGCAGCTCT----CTTACTTCCTAAGAGAGCTTAAAGG-GAAA--AAAAAATGGAATTCT-CCCCATTTTACTCAAAAATTACTTTCTTGTATCTTCTT----CTCAG-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553476 138 + 5243153 TGTCAGCAGCTCT----CTTACTTCCTGAGACAGCCTAAAGG-G-AA--AAAAATCGGAATCCTCCCCCATTTTACTCAAAAGTTAGTTTCTTATAACTTCTT----CTCAG-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887094 137 - 1938448 TGTCAGCAGCTCT----CTTACTTCCTAAGAGAGCCTAAAGG-G-AA--AAAAATTGGAATCCT-CCCCATTTTACTCAAAAGTTAGTTTCTTGTATCTTCTT----CTCAG-TCTTGATTGTTAACTTCCTTTGATCCCTGATCTTTTTC i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2609890 141 - 159902609 TGTCAGCAGATCT----CTTGCTTCCTATGGAAGCAAAAAGGAA-AA--AAGAATTAAAATCCT-CTCCATTTCACTCAAAGGTTAATTTCTTATA--TTCTTATTCTTCCGATCTTGATTGTCATCTTCCTTTGATCCCTGATCTTTTTC i micMur3.chr8 I 435 I 10 s proCoq1.NW_012151163v1 921035 139 + 1238772 TGTCAGTAGATCT----CTTGCTTCCTATAAAAGCAAGAAGG-A-AA--AAGAATTAAAATCCT-CTCCATTTCACTCAAAGGTTAATTTCTTATA--TTCTTATTCTTCAG-TCTTGATTGTCATCTTCCTTTGATCCCTGATTGCTTTC i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2494075 136 + 5252280 TGTCAGCTGATTT----CTTGCTTCCCATAAAAGCAAAAAGG-G-AA--AAAA--TGAAATCCT-TTCCATTTCTCACAAAGGCTAATTTTTTAAA--TTCTTATTCTTCAA-TCTTGATTGT-ACCTTCCTTTGATCCTTGATCtttttc i otoGar3.GL873658 C 0 I 113 s mm10.chr12 91393348 132 - 120129022 TAGCTGCACATATGACACCTGTGCCCTACAAT-GCCCAAAGG-A-AA--AATAACTAAAATTTG-CTCC-TGTCACCCAAAGGTTTGCTTCCTAGC-----------CTTTG-GTGTATTTTTTATCTTCCTTTTATCTCTGCTCGTTTGC i mm10.chr12 C 0 C 0 s dasNov3.JH580157 507905 141 + 2232271 TGTCCGCAGATCT----CTTGCCTCCTGTAAGAGCAAAAAGG-G-AAACAAAAATTAAAACCTT-CCCTATTCCACTCTAAAGTTAGTTTCTTATG--TCCTTATTCTTTTG-TCTTGATGGATGTCTTTCTCTAATCCCTGATCCTTTGC i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I a score=-30853.000000 s hg38.chr2_KI270769v1_alt 12544 5 + 120616 CC--------AAA s panTro5.chr2A 3449878 5 + 111504155 CC--------AAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336627 5 + 114371477 CC--------AAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210261 5 + 637652 CC--------AAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009687 8 + 81552678 CC-----AAAAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268450 8 + 108979918 CC-----AAATAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981540 8 - 111193037 CC-----AAATAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376283 8 + 3644372 CC-----AAATAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329229 8 - 10304083 CC-----AAATAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413378 10 - 107702431 CC---AAAAAAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943225 8 + 1565135 CC-----AAATAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3319777 13 - 13651311 CCAAAAAAAAAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404252 3 - 108792865 CC----------A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3067399 3 - 7082604 CC----------A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553614 3 + 5243153 CC----------A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887231 3 - 1938448 CC----------A i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 921174 5 + 1238772 --------TTGGA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2494324 5 + 5252280 --------ccaaa i otoGar3.GL873658 I 113 I 171 s mm10.chr12 91393480 5 - 120129022 CC--------AGA i mm10.chr12 C 0 C 0 s dasNov3.JH580157 508046 5 + 2232271 --------CTGGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610031 10 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I a score=69838.000000 s hg38.chr2_KI270769v1_alt 12549 7 + 120616 AAAATCT- s panTro5.chr2A 3449883 7 + 111504155 AAAATCT- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336632 7 + 114371477 AAAATCT- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210266 7 + 637652 AAAATCT- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009695 7 + 81552678 AAAACCT- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268458 7 + 108979918 AGAAACC- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981548 7 - 111193037 AAAAACC- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376291 7 + 3644372 AAAAACC- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329237 7 - 10304083 AAAAACC- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413388 7 - 107702431 AAAAACC- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943233 7 + 1565135 AAAAACC- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3319790 7 - 13651311 AAAAACC- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404255 7 - 108792865 AAAAACC- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3067402 7 - 7082604 AAAAACC- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553617 7 + 5243153 AAAAACC- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887234 7 - 1938448 AAAAACC- i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 921179 5 + 1238772 --AAATC- i proCoq1.NW_012151163v1 C 0 I 1 s otoGar3.GL873658 2494500 6 + 5252280 -AAAACC- i otoGar3.GL873658 I 171 C 0 s mm10.chr12 91393485 5 - 120129022 --AAACC- i mm10.chr12 C 0 I 2 s dasNov3.JH580157 508051 7 + 2232271 -AAAACTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610031 10 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I a score=505237.000000 s hg38.chr2_KI270769v1_alt 12556 34 + 120616 TTTTTTGGAGTTTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG s panTro5.chr2A 3449890 34 + 111504155 TTTTTTGGAGTTTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336639 34 + 114371477 TTTTTTGGAGTTTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210273 34 + 637652 TTTTTTGGAGTTTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009702 34 + 81552678 TTTTTTGGAGTTTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268465 34 + 108979918 TTTTTTGGAGTCTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981555 34 - 111193037 TTTTTTGGAGTCTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376298 34 + 3644372 TTTTTTGGAGTCTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329244 34 - 10304083 TTTTTTGGAGTCTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413395 34 - 107702431 TTTTTTGGAGTCTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943240 34 + 1565135 TTTTTTGGAGTCTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3319797 34 - 13651311 TTTTTTGGAGTCTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404262 34 - 108792865 TTTTTTGGAGTCTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3067409 34 - 7082604 TTTTTTGGAGTCTTGC----C-C-----------------------AAAAAGCCTGT-TTTCG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553624 34 + 5243153 TTTTTTGGAGTGTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887241 34 - 1938448 TTTTTTGGAGTCTTGC----C-C-----------------------AAAAAGCCTGT-TTTTG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2610041 34 - 159902609 TTTTTTGGGGTCTTGC----C-A-----------------------AAAAAGCCTGT-TTTTG i micMur3.chr8 I 10 I 1244 s proCoq1.NW_012151163v1 921185 33 + 1238772 -TTTTTGGGGTCTTGC----C-A-----------------------AAAGAGCCTGT-TTTTG i proCoq1.NW_012151163v1 I 1 C 0 s otoGar3.GL873658 2494506 35 + 5252280 TTTTTTGGGATCTTAC----CAA-----------------------AAAGAGCCTGT-TTTTG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91393492 53 - 120129022 ---TTTG--ATCTTAC----T-CATGCACACACCCAAAAAAAAAAAAAAAAGCCAGTGTTTTG i mm10.chr12 I 2 C 0 s dasNov3.JH580157 508058 34 + 2232271 ---TCTTGGCTCTTGCAATAC-C-----------------------TATGAG-CTGT-TTTTG i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I a score=2361978.000000 s hg38.chr2_KI270769v1_alt 12590 181 + 120616 AGAAAGTACCGAACATTGGCAAAGCAGCCTTAGTTACTTGGATTTTATCCTGACTTCATTATATGCATGAACTG---GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTT---GGGGGAGACAGAGCCAACCTACAAAAATTAAAAATCTGTAAtaaacaccgtgacagtcaggaag- s panTro5.chr2A 3449924 181 + 111504155 AGAAAGTACCGAACATTGGCAAAGCAGCCTTAGTTACTTGGATTTTATCCTGACTTCATTATATGCATGAACTG---GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTT---GGGGGAGACAGAGCCAACCTACAAAAATTAAAAATCTGTAAtaaacaccgtgacagtcaggaag- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336673 181 + 114371477 AGAAAGTACCGAACATTGGCAAAGCAGCCTTAGTTACTTGGATTTTATCCTGACTTCATTATATGCATGAACTG---GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTT---GGGGGAGACAGAGCCAACCTACAAAAATTAAAAATCTGTAAtaaacaccgtgacagtcaggaag- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210307 181 + 637652 AGAAAGTACCGAACATTGGCAAAGCAGCCTTAGTTACTTGGATTTTATCCTGACTTCATTATATGCATGAATTG---GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTT---GGGGGAGACAGAGCCAACCTACAAAAATTAAAAATCTGTAAtaaacaccgtgacagtcaggaag- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009736 181 + 81552678 AGAAAGTACCGAACATTGGCAAAGCAGCCTTAGTTACTTGGATTTTATCCTGACTTCATTATATGCATGAACTG---GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTT---GGGGGAGACAGAGCCAACCTACAAAAATTAAAAATCTGTAAtaaacaccgtgacagtcaggaag- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268499 183 + 108979918 AAAAAGTACCGAACCTTGGCAAAGCAGCCTCAGTTACTTGGATTTTATCCTGACTTCATTATATGCATGAACT----GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTTGTAGGGGGAGACAGAGCCAACCTACAAAAATGAAAAATCTGTAAtaaacaccgtgacagtcaggaag- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981589 183 - 111193037 AAAAAGTACCGAACCTTGGCAAAGCAGCCTCAGTTACTTGGATTTTATCCTGACTTCATTATATGCATGAACT----GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTTGTAGGGGGAGACAGAGCCAACCTACAAAAATGAAAAATCTGTAAtaaacaccgtgacagtcaggaag- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376332 183 + 3644372 AAAAAGTACCGAACCTTGGCAAAGCAGCCTCAGTTACTTGGATTTTATCCTGACTTCATTATATGCATGAACT----GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTTGTAGGGGGAGACAGAGCCAACCTACAAAAATGAAAAATCTGTAAtaaacaccgtgacagtcaggaag- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329278 183 - 10304083 AAAAAGTACCGAACCTTGGCAAAGCAGCCTCAGTTACTTGGATTTTATCCTGACTTCATTATATGCATGAACT----GGAGGTGACATGTCATCAGTGTCAATAACAAATGCCGTAACTTGTAGGGGGAGACAGAGCCAACCTACAAAAATGAAAAATCTGTAAtaaacaccgtgacagtcaggaag- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413429 184 - 107702431 AAAAAGTACCGAACCTTGGCAAAGCAGCCTCAGTTACTTGGATTTTATCCTGACTTCATTATATGCATGAACTG---GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTTGTAGGGGGAGACAGAGCCAACCTACAAAAATGAAAAATCTGTAAtaaacaccgtgacagtcaggaag- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943274 177 + 1565135 AAAAAGTACCGAACCTTGGCAAAGCAGCCTCAGTTACTTGGATTTTATCCTGACTTCATTATATGCATGAACT----GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTTGTAGGGG------GAGCCAACCTACAAAAATGAAAAATCTGTAAtaaacaccgtgacagtcaggaag- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3319831 184 - 13651311 AAAAAGTACCGAACCTTGGCAAAGCAGCCTCAGTTACTTGGATTTTATCCTGACTTCATTATATGCATGAACTG---GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTTGTAGGGGGAGACAGAGCCAACCTACAAAAATGGAAAATCTGTAAtaaacaccgtgacggtcaggaag- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404296 184 - 108792865 AGAAAGCACCAAACGTTGGCAAAGCCCCCTTAGTTACTTGGATTTTATCCTGATTTTATTCTATGCATGAACTG---GGAGGTGACATGTCACCAGTGTCAATAACAAATGCTGTAACTTGTGGGGGGAGACGGAGCCAACCTAAGAAAATTAAAAATCTGTAAtaagcactgtgacagtcaggaag- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3067443 184 - 7082604 AGAAAGTACCGAACATTGGCAAAGCACCCTTAGTTACTTGGATTTTATCCTGACTTCATTACATGCCTGAACTG---GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTTGTGGGGAGAGACAGAGCCAACCTAAGAAAATTAAAAATCTGTAAtaaacaccgtgacagtcaggaag- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 553658 184 + 5243153 AGAAAGTACCGAACATTGGCAAAGCACCCTTAGTTACTTGGATTTTATCCTGACTTCATTATATGTATGAACTG---GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTTGTGGGGGGAGACAGAGCCAACCTAAGAGAATTAAAAATCTGTAAtaaacatcgtgacagtcaggaag- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887275 184 - 1938448 AGAAAGTACCGAACATTGGCAAAGCACCCTTAGTTACTTGGATTTTATCCTGACTTCATTATATGCATGAACTG---GGAGGTGACATGTCATCAGTGTCAATAACAAATGCTGTAACTTGTGGGGGGAGACAGAGCCAACCTAAGAAAATTAAAAATCTGTAAtaagcaccatgacagtcagggag- i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 921218 183 + 1238772 AAAAAGTCCTGAACATTGGCAAAGTGCCCTTAGTTACGTGGGTTTTATCCTGACTCCGTCACATGCCTGCACTG---GAAGGTGACACGTCATCAGCATCAGTAATAAATGCTGTATCTC-TGGGTGGAGGCAGAGCCAGTCTGCAACAATTAAAGATCTGCGAtaagcactgtgacaggcgggaag- i proCoq1.NW_012151163v1 C 0 I 249 s otoGar3.GL873658 2494541 180 + 5252280 AAAACATACTGAACCTTGGCAGAGCGCTATTAGTTACTTTGATTTTATCCTGACTCCAT-GCATGTCTGAACTG---GAGGCTGACGCGTCATCAGTGTCAATAACAAATGCTATAACTT---GATGGAGGCAGAGCCAGAGTGCAAAACTTAACAATCTGTGATAAACACTGGGACAGGCTGGTGA- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91393545 125 - 120129022 ACAATACACTGAGCCT-------------------------------TTCTGAGCCCTCTATCCCCAGACAATA---G---------TGACTTCAGTGTCAGTGGGCAAGTCTGT--CTT-------CAGGTGCAGCAAAACCATGAAAAC----------CAGTAAGCACCCTGACAGTCAGGAAA- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 508092 187 + 2232271 AGAAAGCTTTGAGCATTGGCAGAGCACTCTTAGCAACTTGGATTTTGTCCTGACTTCATTATATGTATGAACTGGAAGAAGATGACATGTCACCAGTGTCAGTAACAAATGCTTTAAATTGGAGTGGAGGCAGAAGCCAGattataaaaattaattattt-taataaataccaggagggtggagattg i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I a score=1164711.000000 s hg38.chr2_KI270769v1_alt 12771 138 + 120616 cg--tgtcttgttcaccagtg--catctgaggacccagcacggt--caggcacagaatgggtacacggcgtcttc---ttgagtaaataaaGGGATGAGGGAATGAATAGATAAGAGAA--CCCCCAGTCGGTAAGCTACTCTTTTGAT s panTro5.chr2A 3450105 138 + 111504155 ca--tgtcttgttcaccagtg--catctgaggacccagcacggt--caggcacagaatgagtacacggcgtcttc---ttgagtaaataaaGGGATGAGGGAATGAATAGATAAGAGAA--CCCCCAGTCGGTAAGCTACTCTTTTGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336854 138 + 114371477 ca--tgccttgttcaccagtg--catctgaggacccagcacggt--caggcacagaatgagtacacggcgtcttc---ttgagtaaataaaGGGATGAGGGAATGAATAGATAAGAGAA--CCCCCAGTCGGTAAGCTACTCTTTTGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210488 138 + 637652 cg--tgtcttgttcaccagtg--catctgaggacccagcacggt--caggcacagaatgggtacacggtgtcttc---ttgagtaaataaaGGGATGAGGGAATGAATAGATAAGAGAA--CCCCCAGTCGGTAAGCTACTCTTTTGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3009917 138 + 81552678 ca--tgtcttgttctccagtg--catctgaggacccagcacagt--caggcacagaatgggtacatagcgtcttc---ttgaataaataaaGGGATGAGGGGATGAATAGATAAGAGGA--CCCCCGGTCGGTAAGCTACTCTTTTGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268682 137 + 108979918 cgtctgtcttgttcaccagtg--catctgaggacccagcatggt--cgggcaccgaatg-gcacacagcgtcttc---ttgaataaataaaGGGATGAGGGAATG-ATAG-TAAGAGGA--CCCCCCGTCGGTAAGCTACTCTTTTAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981772 137 - 111193037 cgtctgtcttgttcaccagtg--catctgaggacccagcatggt--cgggcaccgaatg-gcacacagcgtcttc---ttgaataaataaaGGGATGAGGGAATG-ATAG-TAAGAGGA--CCCCCCGTCGGTAAGCTACTCTTTTGAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376515 137 + 3644372 cgtctgtcttgttcaccagtg--catctgaggacccagcatggt--cgggcaccgaatg-gtacacagcgtcttc---gtgaataaataaaGGGATGAGGGAATG-ATAG-TAAGAGGA--CCCCCCGTCGGTAAGCTACTCTTTTGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329461 137 - 10304083 cgtctgtcttgttcaccagtg--catctgaggacccagcatggt--cgggcaccgaatg-gtacacagcgtcttc---ttgaataaataaaGGGATGAGGGAATG-ATAG-TAAGAGGA--CCCCCCGTCGGTAAGCTACTCTTTTGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413613 137 - 107702431 catctgtcttgttcaccagtg--catctgaggacccagcatggt--cgggcaccgaatg-gtacacagcatcttc---ttgaataaataaaGGGATGAGGGAATG-ATAG-TAAGAGGA--CCCCCCGTCGGTAAGCTACTCTTTTGAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943451 137 + 1565135 catctgtcttgttcaccagtg--catctgaggacccagcatggt--cgggcaccgaatg-atacacagcgtcttc---ttgaataaataaaGGGATGAGGGAATG-ATAG-TAAGAGGA--CCCCCCGTCGGTAAGCCACTCTTTTGAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320015 135 - 13651311 cgtctgtcttgttcaccagtg--catctgaggacccagcatggt--caggcaccgaatg-gtacacagcgtcttc---tcgaataaataaaGGGATGAGGGAA-G-ATAG-TAAGAGGA---CCCCCGTCGGCAAGCTACTCGTTTGAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404480 124 - 108792865 cgtgtgtctcattcaccagtg--cgtctgaggacccagcacgct--ggggcacagaatgggtgcac-------------------aataaaGGGATGAGGGGCTGAATAGATAAGAGGA--CCCCCAGGCTGTAAGCTACTCTTTTGAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3067627 124 - 7082604 cgtctgtctcattcaccagtg--catctgaggacccagcacagt--cgggcacagaatgggtacac-------------------aataaaGGGATGAGGGGCTGAATAGGTAAGAGGA--CACCCAGGCCGTAAGCTACTCTTTTGAT i saiBol1.JH378218 C 0 I 317 s cebCap1.NW_016107454v1 553842 124 + 5243153 cgtctgtctcattcaccagtg--catctgaggacccaggacggt--cgggcacagaatgggtacac-------------------aatgaaGGGATGAGGGGCTTAATAGATAAGAGGA--CCCCCAGGCTGTAAGCTACTCTTTTGAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887459 124 - 1938448 cgtctgtcttatgcaccagtg--catctgaggacccagcacagt--cgggcacagaacgggtacac-------------------aataaaGGGAAGAGGGGCTGAATAGAGGAGAGGA--CCCCCAGGCTGTAAGCTACTCTTTCGAT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2494721 135 + 5252280 Cgtcggtcctgttcccctgag--tctct--gggcccggcccagt--caagcacgtgatgggtgcgcaacaatttt---ttgaataaataaaGGGAAGAGTGAACAGATAAATGAGAGGAACCCCCCAGGGAGGAAGCTGCTCTT----- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91393670 76 - 120129022 CGGCTATTTCATT-------------------------------------GACAGAATCTGCACACAGATGGTGT---ATAGAGAACTATAGAGA-----------ATTG-----------GCTCTGGGAAGGAAGCT----------- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 508279 142 + 2232271 --tctgtcttgttcaccattgaaaatccaagg-ccttgcacagtgctgagcacttagtaagtgctcaaattttttaaaataaataaatAAAGGAATGAGTGAATAAATAGATAAGAGGA----AAAAGGCAGGAGGCTGCTCTTTTGAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 921401 249 + 1238772 I a score=634055.000000 s hg38.chr2_KI270769v1_alt 12909 52 + 120616 AAAGAAGTAGCGTCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTCATA s panTro5.chr2A 3450243 52 + 111504155 AAAGAAGTAGCGTCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTCATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3336992 52 + 114371477 AAAGAAGTAGCGTCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTCATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210626 52 + 637652 AAAGAAGTAGCGTCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTCATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010055 52 + 81552678 AAAGAAGTAGCGTCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTCATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268819 52 + 108979918 AAAGAAGTAGCACCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTCATA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981909 52 - 111193037 AAAGAAGTAGCACCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTCATA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376652 49 + 3644372 AAAGAAGTAGCACCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTC--- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329598 52 - 10304083 AAAGAAGTAGCACCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTCATC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413750 52 - 107702431 AAAGAAGTAGCACCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTCATA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943588 52 + 1565135 AAAGGAGTAGCACCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTCATA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320150 52 - 13651311 AAAGAAGTAGCACCAGAATGTTGGGTTTAAAGAAATACAGAAGGAGCTCATA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404604 52 - 108792865 AAAGAAGTAGCATCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTGATG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068068 52 - 7082604 aaagaaaTAGCATCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTGATG i saiBol1.JH378218 I 317 C 0 s cebCap1.NW_016107454v1 553966 52 + 5243153 AAAGAAGTAGCATCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTGATG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887583 52 - 1938448 AAAGAAGTAGCGTCAGAATGTTGGGTTTAAAGAAATAGAGAAGGAGCTGATG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2494856 52 + 5252280 GAGAAAGTCAAGTCAGAATGTCGGTTTCAAGAAACGGAGGAAGGAGCTCAGA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91393746 52 - 120129022 GAAACAGTAGAGTCAGAATACTGGTTTGAAAAAAATGGAAGAAggactaata i mm10.chr12 C 0 I 2790 s dasNov3.JH580157 508421 48 + 2232271 AAAGAAATAGAATCAGAATGTTGGTTTTAA-GAAATAAAGAGACTTCTA--- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 921401 249 + 1238772 I a score=21928.000000 s hg38.chr2_KI270769v1_alt 12961 2 + 120616 CA s panTro5.chr2A 3450295 2 + 111504155 CA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337044 2 + 114371477 CA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210678 2 + 637652 CG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010107 2 + 81552678 CA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268871 2 + 108979918 CA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981961 2 - 111193037 CA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3329650 2 - 10304083 CA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413802 2 - 107702431 CA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943640 2 + 1565135 CA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320202 2 - 13651311 CA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404656 2 - 108792865 CA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068120 2 - 7082604 CA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554018 2 + 5243153 CA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887635 2 - 1938448 CA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2494908 2 + 5252280 CA i otoGar3.GL873658 C 0 I 2 s dasNov3.JH580157 508469 2 + 2232271 TA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e mm10.chr12 91393798 2790 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 921401 249 + 1238772 I e macNem1.NW_012011978v1 3376701 0 + 3644372 C a score=132230.000000 s hg38.chr2_KI270769v1_alt 12963 16 + 120616 AAAGGATAGAGTGGGG-- s panTro5.chr2A 3450297 16 + 111504155 ACAGGATAGAGCGGGG-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337046 16 + 114371477 ACAGGATAGAGCGGGG-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210680 16 + 637652 AAAGGATAGAGCAGGG-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010109 16 + 81552678 AAAGGATAGAGCGGGG-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268873 16 + 108979918 AAAGGATAGAGCAGGG-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981963 16 - 111193037 AAAGGATAGAGCAGGG-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376701 11 + 3644372 -----ATAGAGCAGGG-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329652 15 - 10304083 AAGG-GTAGAGCAGGG-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413804 16 - 107702431 AAAGGATAGAGCAGGG-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943642 16 + 1565135 AAAGGATAGAGCAGGG-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320204 16 - 13651311 AAAGGATAGAGCAGGG-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404658 16 - 108792865 AAAGGATAGAGTGGGG-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068122 16 - 7082604 GAAGGATAGAGTGGGG-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554020 16 + 5243153 AAAGGATAGAGTGGGG-- i cebCap1.NW_016107454v1 C 0 I 12 s aotNan1.NW_018507213v1 1887637 16 - 1938448 GAAGGATAGAGTGGGG-- i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 508471 16 + 2232271 --TATTTATAGTGGAGAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e mm10.chr12 91393798 2790 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 921401 249 + 1238772 I e otoGar3.GL873658 2494910 2 + 5252280 I a score=81004.000000 s hg38.chr2_KI270769v1_alt 12979 15 + 120616 GGCGGTTACGGGGGA---- s panTro5.chr2A 3450313 15 + 111504155 GGCGGTTACGGGGGA---- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337062 15 + 114371477 GGCGGTTACGGGGGA---- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210696 15 + 637652 GGCGGTTACGGGGGA---- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010125 15 + 81552678 GGCGGTTATGGGGGA---- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268889 15 + 108979918 GGCCGTTCCAGGGAA---- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981979 15 - 111193037 GGCGGTTCCAGGGAA---- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376712 15 + 3644372 GGCGGTTCCAGGGAA---- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329667 15 - 10304083 GGCGGTTCCAGGGGA---- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413820 15 - 107702431 GGCGGTTCTAGGGGA---- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943658 15 + 1565135 GGCGGTTCCAGGGGA---- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320220 14 - 13651311 GGCGGTTC-AGGGGA---- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404674 14 - 108792865 -GTGGTTTCTAGTGG---- i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3068138 14 - 7082604 -GTGGTTTCTGGTGG---- i saiBol1.JH378218 C 0 I 1 s aotNan1.NW_018507213v1 1887653 14 - 1938448 -GTGGTTTCTAGTGG---- i aotNan1.NW_018507213v1 C 0 I 1 s dasNov3.JH580157 508487 19 + 2232271 GGCGCTTATAAAAGGAATA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e mm10.chr12 91393798 2790 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 921401 249 + 1238772 I e otoGar3.GL873658 2494910 2 + 5252280 I e cebCap1.NW_016107454v1 554036 12 + 5243153 I a score=115191.000000 s hg38.chr2_KI270769v1_alt 12994 11 + 120616 GGGGGCGCAAA s panTro5.chr2A 3450328 11 + 111504155 GGGGGCGCAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337077 11 + 114371477 GGGGGCGCAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210711 11 + 637652 GGGGGCGCAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010140 11 + 81552678 GGGGGCGCAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268904 11 + 108979918 GGGGGCGCAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4981994 11 - 111193037 GGGGGCGCAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376727 11 + 3644372 GGGGGCGCAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329682 11 - 10304083 GGGGGCGCAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413835 11 - 107702431 GGGGGCGCAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943673 11 + 1565135 GGGGGCGCAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320234 11 - 13651311 GGGGGCGCAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404689 9 - 108792865 --GGGCACAAA i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3068153 9 - 7082604 --GGGCACAAA i saiBol1.JH378218 I 1 C 0 s cebCap1.NW_016107454v1 554048 11 + 5243153 GAGGGCACAAA i cebCap1.NW_016107454v1 I 12 C 0 s aotNan1.NW_018507213v1 1887668 9 - 1938448 --GAGCACAAA i aotNan1.NW_018507213v1 I 1 C 0 s dasNov3.JH580157 508506 11 + 2232271 GGTGACCCAAA i dasNov3.JH580157 C 0 I 1972 e micMur3.chr8 2610075 1244 - 159902609 I e mm10.chr12 91393798 2790 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 921401 249 + 1238772 I e otoGar3.GL873658 2494910 2 + 5252280 I a score=135993.000000 s hg38.chr2_KI270769v1_alt 13005 22 + 120616 GAGTGAG--GAGATGAAACCACAA s panTro5.chr2A 3450339 22 + 111504155 GAGTGAG--GAGATGAAACCACAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337088 22 + 114371477 GAGTGAG--GAGATGAAACCACAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210722 20 + 637652 GAGTGAG--GAGATGAAACCAC-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010151 22 + 81552678 GAGTGAG--GAGATGAAACCACAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268915 20 + 108979918 GAGTGAG--GAGGCGAAACCAC-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4982005 20 - 111193037 GAGTGAG--GAGGCGAAACCAC-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376738 20 + 3644372 GAGTGAG--GAGGCGAAACCAC-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329693 20 - 10304083 GAGTGAG--GAGGCGAAACCAC-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413846 20 - 107702431 GAGTGAG--GAGGCAAAACCAC-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943684 20 + 1565135 GAGTAAG--GAGGCGAAACCAC-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320245 20 - 13651311 GAGTGAG--GAGGTGAAACCAC-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404698 24 - 108792865 GCGTGAGAAGAAATGAAATCACAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068162 24 - 7082604 GCGTGAGAAGAAATGAAATCACAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554059 24 + 5243153 GCGTGAGAACAAATGAAATCACAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887677 24 - 1938448 GCGTGAGAAGAAATGAAATCACAG i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e mm10.chr12 91393798 2790 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 921401 249 + 1238772 I e dasNov3.JH580157 508517 1972 + 2232271 I e otoGar3.GL873658 2494910 2 + 5252280 I a score=821919.000000 s hg38.chr2_KI270769v1_alt 13027 85 + 120616 GAAGATTAGTCTGGAGAAAGATGGAACATTTCTTCCTCTGCaatgacagaaaaggaaaggaaggatttgaaaggaatgaaaaTCG s panTro5.chr2A 3450361 85 + 111504155 GAAGATTAGTCTGGAGAAAGATGGAACGTTTCTTCCTCTGCaatgacagaaaaggaaaggaaggatttgaaaggaatgaaaaTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337110 85 + 114371477 GAAGATTAGTCTAGAGAAAGATGGAACGTTTCTTCCTCTGCaatgacagaaaaggaaaggaaggatttgaaaggaatgaaaaTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210742 84 + 637652 -AAGATTAGTCTGGAGAAAGATGGAACGTTTCTTCCTCTGCAGTGACAGAAAAGGAAAGGAAGGATTTGATAGGAATGAAAATCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010173 85 + 81552678 GAAGATTAGTCTGGAGAAAGATGGAGTGTTTCTTCCTCTGCAATGGCAGAAAAGGAAAGGAAGGATTTGATAGGAATGAAAATCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3268935 83 + 108979918 -AAGATGAGTCTGG-GAAAGATGGAACGTTTCTTCCTCTGCAATGACAGAAAAGGAAAGGAAGGATTTGATAGGAATGCAAATCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4982025 83 - 111193037 -AAGATGAGTCTGG-GAAAGATGGAACGTTTCTTCCTCTGCAATGACAGAAAAGGAAAGGAAGGATTTGATAGGAATGCAAATCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376758 83 + 3644372 -AAGATGAGTCTGG-GAAAGATGGAACGTTTCTTCCTCTGCAATGACAGAAAAGGAAAGGAAGGATTTGATAGGAATGCAAATCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329713 83 - 10304083 -AAGATGAGTCTGG-GAAAGATGGAACGTTTCTTCCTCTGCAATGACAGAAAAGGAAAGGAAGGATTTGATAGGAATGCAAATCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413866 83 - 107702431 -AAGATGAGTCTGG-GAAAGATGGAACGTTTCTTCCTCTGCAATGACAGAAAAGGAAAGGAAGGATTTGATAGGAATGCAAATCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943704 83 + 1565135 -AAGATGAGTCTGG-GAAAGATGGAACGTTTCTTCCTCTGCAATGACAGAAAAGGAAAGGAAGGATTTGATAGGAATGCAAATCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320265 82 - 13651311 -AAGATGAGTCTGG-GAAAGATGGAAC-TTTCTTCCTCTGCAATGACAGAAAAGGAAAGGAAGGATTTGATAGGAATGCAGATCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404722 81 - 108792865 GAAGATGAGTCTGGAGAGAGAGGGAACGTTTCTTCCTCTGCCGTGACAGAAAAGGAAAGGAAGG---CGATAGG-ATGAATATCG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068186 82 - 7082604 GGAGATGAGTCTGCAGAGAGGGGGAGCATTTCTTCCTCTGCCGTGACAGAAAAGGAAAGGAAGG---CAATCGGAATGAAAATCG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554083 82 + 5243153 GGAGATGAGTCTGGAGAGAGAGGGAACATTTCTTCCTCTGCCATGACAGAAAAGGAAAGGAAGG---CGATAGGAATGAAAATCG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887701 82 - 1938448 GAAGATGAGTCTGGAGAGAGAGGGGACATTTCTTCCTCTGCCATGACAGAAAAGGAAAGGAAGG---CGATAGGAATGAAAATCA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 921650 84 + 1238772 GAAGATTAGTTTGGAAAAAGATGGAACTTTTCTTCCCCCACCATGAGAGAAAAGGAGAGG-AGGATTTGCTAGGAGTTGAAGTCT i proCoq1.NW_012151163v1 I 249 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e mm10.chr12 91393798 2790 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e dasNov3.JH580157 508517 1972 + 2232271 I e otoGar3.GL873658 2494910 2 + 5252280 I a score=633504.000000 s hg38.chr2_KI270769v1_alt 13112 54 + 120616 AATCCAGCACAttttcaaactgtgattctgagaaccctcgggttccagggaggg s panTro5.chr2A 3450446 54 + 111504155 AATCCAGCACATTTTCAAACTGTGATTCTGAGAACTCTCGGGTTCCAGGGAGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337195 54 + 114371477 AATCCAGCACATTTTCAAACTGTGATTCTGAGAACTCTCGGGTTCCAGGGAGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210826 54 + 637652 AATCCAGCACgttttcaaactgtaattctgagaaccctcgggttccagggaggg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010258 54 + 81552678 AATCTAGCACAttttcaaactgtgattctgagaagcctcgggttccagggaggg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3269018 54 + 108979918 AATCTAACACAttttcaaactgtgattctgagaaccctcgggttccagggaggt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4982108 54 - 111193037 AATCTAACACAttttcaaactgtgattctgagaaccctcgggttccagggaggt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376841 54 + 3644372 AATCTAACACAttttcaaactgtgattctgagaacccttgggttccagggaggt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329796 54 - 10304083 AATCTAGCACAttttcagactgtgattctgagaaccctggggttccagggaggt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3413949 54 - 107702431 AATCTAGCACAttttcaaactgtgattctgagaaccctcgggttccagggaggt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943787 54 + 1565135 AATCTAGCACAttttcagactgtgattctgagaaccctggggttccagggaggt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320347 54 - 13651311 AATCTAGCACAttttcaaactatgattctgagaaccctcaggttccagggaggg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404803 54 - 108792865 AATCAAGCACATTTTCAAACTGTGATTCTGAGAACCCCAGGGCTCCAGGGAGGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068268 54 - 7082604 AATCAAGCACATTTTCAAACTGTGATTCTGAGAACCCCAGGGCTCCTGGGAGGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554165 54 + 5243153 AATCAAGCACAttttcaaactgcgattctaagaaccccagggttccagggaggg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887783 54 - 1938448 AATCAAGCACAGTTTCAAACTGTGATTCTGAGAACCCCAGGGCTCCAGAGAGGG i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 921734 54 + 1238772 AATCTGACGTgttttcaaactgtgtttctgagaaccctggggttccagggaggG i proCoq1.NW_012151163v1 C 0 I 696 s dasNov3.JH580157 510489 53 + 2232271 aATCTAGCATATTTTTA-ACTGTGTTTCAGGGAACCCTAGAGTACCAGGTAGAC i dasNov3.JH580157 I 1972 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e mm10.chr12 91393798 2790 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e otoGar3.GL873658 2494910 2 + 5252280 I a score=460000.000000 s hg38.chr2_KI270769v1_alt 13166 58 + 120616 accttggggTGACTGGGCATGGCCTGC-----------------------GGAGGTGACTTGGTAGGGCCA--GTGTCAGGCA s panTro5.chr2A 3450500 58 + 111504155 ACCTTGGGGTGACTGGGCATGGCCTGC-----------------------GGAGGTGACTTGGTAGGGCCA--GTGTCAGGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337249 81 + 114371477 ACCTTGGGGTGACTGGGCATGGCCTGCGGGGGTGACTGGGCATGGCCTGTGGAGGTGACTTGGTAGGGCCA--GTGTCAGGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210880 58 + 637652 gcctcggggtgactgggcgTGGCCTGC-----------------------GGAGGTGACTTGGTAGGGCCA--GTGTCAGGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010312 44 + 81552678 gcctcggggtgactgggCATGGCCTGC-----------------------AGAGGCGACTTGT----------------GGCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3269072 58 + 108979918 gccttggggtgactgggCACGGCCTGC-----------------------GGAGGTGACTTGCTAGGGCCA--GTGTCACGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4982162 58 - 111193037 gccttggggtgactgggCATGGCCTGC-----------------------GGAGGTGACTTGCTAGGGCCA--GTGTCACGCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376895 58 + 3644372 gccttggggtgactgggCATGGCCTGC-----------------------GGAGGTGACTTGCTAGGGCCA--GTGTCACGCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329850 58 - 10304083 gcctcggggTGACTGGGCATGGCCTGC-----------------------AGAGGCGACTTGCTAGGGCCA--GTGTCACGCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3414003 58 - 107702431 gcctcggggtgactgggCATGGCCTGC-----------------------GGAGGCAACTTGCTAGGGCCA--GTGTCACGCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943841 58 + 1565135 gcctcggggtgactgggCATGGCCTGC-----------------------GGAGGCGACTTGCTAGGGCCA--GTGTCACGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320401 58 - 13651311 gcctcagggTGACTGGGCATGGCCTGC-----------------------AGAGGCGACTTGCTAGGGCCA--GTGTCACGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404857 59 - 108792865 GCCTC-GGGTGACTGGCCATGGCCTGG-----------------------GGAGGCAACTTGGTGGGGACAGAGTGTCCTGTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068322 59 - 7082604 GCCTC-GGGTGACTGGTCCTGGCCTGG-----------------------GGAGGCGACTTGGTAGGGCCAGCGTGTCACGTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554219 59 + 5243153 gcctc-gggTGACTGGCCATGGCCTGG-----------------------GGAGGTGACTTGGTAGGCCCAGAGTGTCATGTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887837 59 - 1938448 GCCTC-GGGTGACTGGCCATGGCCTGG-----------------------GAAGGCGACTAGGTAGGGCCAGAGTGTCATGAG i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 510542 50 + 2232271 ACCTG--------TGGGATGGACCAAG-----------------------AGAGCCAAACTGGGAGGGCCA--TTTTCATGGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e mm10.chr12 91393798 2790 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 921788 696 + 1238772 I e otoGar3.GL873658 2494910 2 + 5252280 I a score=1079765.000000 s hg38.chr2_KI270769v1_alt 13224 110 + 120616 GAGCATTTCAGCAGGGTCTACTTTATGTAG---AAGT----CTCTCTTGAGATGTCTTTTTTTGGGGGGGTGGGG----------GGAAAGGAGGATGAATTTTACTATTTAA---AAA-TTTGAAAAAC-T s panTro5.chr2A 3450558 109 + 111504155 GAGCATTTCAGCAGGGTCTACTTTATGTAG---AAGT----CTCTCTTGAGATGTCTTTTTTT-GGGGGGTGGGG----------GTAAAGGTGGATGAATTTTACTATTTAA---AAA-TTTGAAAAAC-T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337330 109 + 114371477 GAGCATTTCAGCAGGGTCTACTTTATGTAG---AAGT----CTCTCTTGAGATGTCTTTTTTT-GGGGGGTGGGG----------GGAAAGGTGGATGAATTTTACTATTTAA---AAA-TTTGAAAAAC-T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 210938 108 + 637652 GAGCGTTTCAGCAGGGTCTACTTTATGTAG---AAGT----CTCTCTTGATACGTCTTTTTTT--GGGGGTGGGG----------GGAAAGGTAGATGAATTTTACTATTTAA---AAA-TTTGAAAAAC-T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010356 109 + 81552678 GAGCATTTCAGCAGGGTCTACTTTATACAG---AAGT----CTCTCTTGAGATGTCTTTTTTT-GGGGGGTGGGG----------GGAAAGGTGAATGAATTTTACTATTTAA---AAA-TTTGAAAAAC-T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3269130 110 + 108979918 GAGCATTTCAGCAGGATCTATTTTATACAT---AAGT----CTCTCTTGAGATGTCTTTTTTT-GGGGAGTGGGG----------GAAAAGGTGGATGAATTTTACTATTTAA---AAA-TTTGAAAAACTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4982220 110 - 111193037 GAGCATTTCAGCGGGATCTATTTTATACAT---AAGT----CTCTCTTGAGATGTCTTTTTTT-GGGGGGTGGGG----------GAAAAGGTGGATGAATTTTACTATTTAA---AAA-TTTGAAAAACTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3376953 110 + 3644372 GAGCATTTCAGCGGGATCTATTTTATACAT---AAGT----CTCTCTTGAGATGTCTTTTTTT-GGGGGGTGGGG----------GAAAAGGTGGATGAATTTTACTATTTAA---AAA-TTTGAAAAACTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3329908 110 - 10304083 GAGCTTTTCAGCGGGATCTATTTTATACAT---AAGT----CTCTCTTGAGATGTCTTTTTTT-GGGGGGTGGGG----------GAAAAGGTGGGTgaattttactatttaa---aaa-ttggaaaagctt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3414061 110 - 107702431 GAGCATTTCAGCGGGATCTATTTTATACAT---AAGT----CTCTCTTGAGATGTCTTTTTTT-GGGGGGTGGGG----------GAAAAGGGGGATGAATTTTACTATTTAA---ATA-TTTGAAAAACTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 943899 110 + 1565135 GAGCATTTCAGCGGGATCTATTTTATACAT---AAGT----CTCTCTTGAGATGTCTTTTTGG-GGGGGATGGGG----------GAAAAGGTGGATGAATTTTACTATTTAA---AAA-TTTGAAAAACTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320459 110 - 13651311 GAGCATTTCAGCGGGATGTATTTTATACAT---AAGT----CTCTCTTGAGATGTCTTTTTTG-GGGGGTTAGGG----------GAAAAGGTGGATGAATTTTACTATTTAA---AAA-TTTGAAAAACTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3404916 109 - 108792865 GAGCATTTCAGCAGGATCTAGTTTATATGT---TAGT----CTCTCTTGAGGTTTCTTTTTCT-GGGGG-AAGGG----------CGAATGGTGGATGAATTTTACTATTTAA---AAAGTTTGGAAAAC-T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068381 110 - 7082604 GAGCATTTCCGCAGGGTCTAGTTTATATGT---AAGT----TTCTCTTGAGGTTTCTTTTTCT-GGGGGTTAGGG----------GGAATGGTGGATAAATTTTACTATTTAA---AAAGTttagaaaac-t i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554278 110 + 5243153 AAGCATTTCAGCAGGGTCTAGTGTATATGT---AAGT----CTCTCTTGAGGTTTCTTTTTCT-GGGGGGTAGGG----------GGAATGGTGGATGAATTTTACTATTTAA---AAAGTTTGGAAAAC-T i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1887896 110 - 1938448 GAGCATTTCAGCAGGGTCTAGTTTATATGG---AAGT----CTCTCTTGAGGTTTCTTTTTCT-GGGGGGTAGGG----------GGAATGGTGGATgaattttacaatttaa---aaagtttggaaaac-t i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2494912 118 + 5252280 GAGCACTTCAGCAGTGTCTGTTTTACATGCC-AAGGT----CTCTCTTGAGAT---TTTTTGG-GGGGGATGGAGAGGGATGGAAGGAGTGGTGGATGAGTTTTACTATTTAA---AAA-CCTTGAAgac-t i otoGar3.GL873658 I 2 I 301 s dasNov3.JH580157 510592 115 + 2232271 GAGCATTTCAGCTGTGTCTTTTTCATGTACTGGAAGTGAAGTTATTTCAAGATTCCTTTT----GGGGGGCAGTG----------AAAATAGGGGATG-GTTTTGCCACTTAAAATAAA-TTTGTAAAAT-T i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e mm10.chr12 91393798 2790 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 921788 696 + 1238772 I a score=1045334.000000 s hg38.chr2_KI270769v1_alt 13334 110 + 120616 AACAtagtccaaaatgcccgctttgtagattagaacactaagatctacaaaggtgtagaggttggcccCAAACAA--------ATGTCCTTGCTCCT--GTTACCAGTACCATCCCTACT s panTro5.chr2A 3450667 110 + 111504155 AACAtagtccaaaatgcccactttgtagattagaacactaagatctacaaaggtgtagaggttggcccCAAACAA--------ATGTCCTTGCTCCT--GTTACCAGTACCATCCCTACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337439 110 + 114371477 AACAtagtccaaaatgcccactttgtagattagaacactaagatctacaaaggtgtagaggttggcccCAAACAA--------ATGTCCTTGCTCCT--GTTACCAGTACCATCCCTACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211046 110 + 637652 AACAtagtccaaaatgcccactttgtagattagaacactaagatctacaaaggtgtagaggttggcccCAAACAA--------ATGTCCTTGCTCCT--GTTACCAGTACCATCCCTACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010465 110 + 81552678 AACAtagtccaaaatgcacactttgtagattagaacactaagatctacaaaggtgtagaggttggcccCAAACAA--------ATGTCCTTGCTCCT--GTTACCAGTACCATCCCTACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3269240 110 + 108979918 AACAtagtccaaaatgctcactttgtagattaaaacactaagatctgcaaaggtgtagaggttggcccCAAACAA--------ATGTCCTCGCTTCT--GTTGCCAGTACCGTCCCTGCT i rheMac8.chr13 C 0 I 299 s macFas5.chr13 4982330 110 - 111193037 AACAtagtccaaaatgctcactttgtagattaaaacactaagatctgcaaaggtgtagaggttggcccCAAACAA--------ATGTCCTCGCTTCT--GTTGCCAGTACCGTCCCTGCT i macFas5.chr13 C 0 I 298 s macNem1.NW_012011978v1 3377063 110 + 3644372 AACAtagtccaaaatgctcactttgtagattaaaacactaagatctgcaaaggtttagaggttggcccCAAACAA--------ATGTCCTCGCTTCT--GTTGCCAGTACCGTCCCTGCT i macNem1.NW_012011978v1 C 0 I 36 s cerAty1.NW_012000820v1 3330018 110 - 10304083 aacatagtccaaaatgctcactttgtagattaaaacactaagatctgcaaaggtgtagaggttggcccCAAACAA--------ATGCCCTCGCTTCT--GTTGCCAGTACCGTCCCTGCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3414171 110 - 107702431 AACAtagtccaaaatgctcactttgtagattaaaacactaagatctacaaaggtgtagaggctggcccCAAACAA--------ATGTCCTCGCTTCT--GTTGCCAGTACCGTCCCTGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 944009 110 + 1565135 AACATAATCCAAAATGCTCACTTTGTAGATTAAAACACTAAGATCTGCAAAGGTGTAGAGGTTGGCCCCAAACAA--------ATGTCCTCGCTTCT--GTTGCCAGTACCGTCCCTGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320569 110 - 13651311 AACGtagtccaaaatgctcactttgtagattaaaacactaagatctacaaaggtgtagaggctggcccCAAACAA--------ATGTCCTCGCTTCT--GTTGCCAGTACCGTCCCTGCT i colAng1.NW_012118821v1 C 0 I 72 s calJac3.chr14 3405025 96 - 108792865 AAAAtagtccaaaatcctcactttgtagattag-aaactaagatctacaaaggtgtggaggttggcccTAAACAA--------ATGTCCTCGCTCCT--GTTACCAG------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068491 97 - 7082604 aatatagtccaaaatcctcactttgtagattagaaaactaggatctacagaggtgtagaggttggcccTAAACAA--------ATGTCCTCGCTCAT--GTGACCAG------------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554388 97 + 5243153 AatatagtccaaaatcctcactttgtagattagaaaactaagatctacagaggtgtagaggttggcccTAAACAA--------ACGTCCTCGCTCCT--GTGACCAG------------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888006 97 - 1938448 aatatagtccaaaatcctcactttgtagattaggaaactgagatctacagaggtgtagaggttggcccTAAACAA--------ATGCACTCGCTCTG--GTTACCAG------------- i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 510707 119 + 2232271 AGTGtagtccaacattctcattttgcaga-tagagcgctaagggctatcaaggtaaaggagtcaccccaagacaacaacCCAGATAACCTAACTCCCTAGCCATCAGTTCTGTTTCCACT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e mm10.chr12 91393798 2790 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 921788 696 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=28632.000000 s hg38.chr2_KI270769v1_alt 13444 4 + 120616 GCCC s panTro5.chr2A 3450777 4 + 111504155 GCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337549 4 + 114371477 GCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211156 4 + 637652 GCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010575 4 + 81552678 GCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3269649 4 + 108979918 GCCC i rheMac8.chr13 I 299 C 0 s macFas5.chr13 4982738 4 - 111193037 GCCC i macFas5.chr13 I 298 C 0 s macNem1.NW_012011978v1 3377209 4 + 3644372 GCCC i macNem1.NW_012011978v1 I 36 C 0 s cerAty1.NW_012000820v1 3330128 4 - 10304083 GCCC i cerAty1.NW_012000820v1 C 0 I 360 s chlSab2.chr14 3414281 4 - 107702431 GCCC i chlSab2.chr14 C 0 I 36 s manLeu1.NW_012104432v1 944119 4 + 1565135 GCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320751 4 - 13651311 GCCC i colAng1.NW_012118821v1 I 72 C 0 s dasNov3.JH580157 510826 4 + 2232271 TCCC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e mm10.chr12 91393798 2790 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e saiBol1.JH378218 3068588 0 - 7082604 C e proCoq1.NW_012151163v1 921788 696 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I e cebCap1.NW_016107454v1 554485 0 + 5243153 C e aotNan1.NW_018507213v1 1888103 0 - 1938448 C e calJac3.chr14 3405121 0 - 108792865 C a score=97021.000000 s hg38.chr2_KI270769v1_alt 13448 12 + 120616 CATGTCCCTTAC------ s panTro5.chr2A 3450781 12 + 111504155 CATGTCCCTTAC------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337553 12 + 114371477 CATGTCCCTTAC------ i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211160 12 + 637652 TGTGTCCCTTAC------ i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010579 12 + 81552678 TGTGTCCCTTAC------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3269653 12 + 108979918 GGTGTCCCTCAC------ i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4982742 12 - 111193037 GGTGTCCCTCAC------ i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3377213 12 + 3644372 GGTGTCCCTTAC------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3330492 12 - 10304083 GGTGTCCCTTAC------ i cerAty1.NW_012000820v1 I 360 C 0 s chlSab2.chr14 3414321 12 - 107702431 GGTGTCCCTTAC------ i chlSab2.chr14 I 36 C 0 s manLeu1.NW_012104432v1 944123 12 + 1565135 GGTGTCCCTTAC------ i manLeu1.NW_012104432v1 C 0 I 13447 s colAng1.NW_012118821v1 3320755 12 - 13651311 GGTGTCCCTTAC------ i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3405121 10 - 108792865 --CGTCCCTTAC------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068588 10 - 7082604 --CGTCCCTTAC------ i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554485 10 + 5243153 --CGTCCCTTAC------ i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888103 10 - 1938448 --CGTCCCTTAC------ i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 510830 16 + 2232271 --TGTATTTCATTCTTGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e mm10.chr12 91393798 2790 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 921788 696 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=44382.000000 s hg38.chr2_KI270769v1_alt 13460 5 + 120616 ACAGT s panTro5.chr2A 3450793 5 + 111504155 ACAGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337565 5 + 114371477 ACAGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211172 5 + 637652 ACAGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010591 5 + 81552678 GTAGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3269665 5 + 108979918 GTAGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4982754 5 - 111193037 GTAGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3377225 5 + 3644372 GTGGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3330504 5 - 10304083 GTAGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3414333 5 - 107702431 ATAGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 957582 5 + 1565135 GTAGT i manLeu1.NW_012104432v1 I 13447 C 0 s colAng1.NW_012118821v1 3320767 5 - 13651311 GTAGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3405131 5 - 108792865 GTAGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068598 5 - 7082604 GTAGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554495 5 + 5243153 GTAGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888113 5 - 1938448 GTAGT i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 510846 5 + 2232271 TCAGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e mm10.chr12 91393798 2790 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 921788 696 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=1193709.000000 s hg38.chr2_KI270769v1_alt 13465 128 + 120616 CCGCACAGCCCAGCAAAAAGCACAGTTGCTGGTGTTGGTTT----TGCTCATTGACTACCTCCCACCAAATGACTTAGTATTTCT-GAACCGTCGGATCTACACACCGTGGGAATTACGCTTTTCAATACAGC s panTro5.chr2A 3450798 128 + 111504155 CCGCACAGCCCAGCAAAAAGCACAGTTGCTGGTGGTGGTTT----TGCTCATTGACTACCTCCCACCAAATGACTTAGTATTTCT-GAACCGTCGGATCTACACACCGTGGGAATTATGCTTTTCAATACAGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337570 128 + 114371477 CCGCATAGCCCAGCAAAAAGCACAGTTGCTGGTGGTGGTTT----TGCTCATTGACTACCTCCCACCAAATGACTTAGTATTTCT-GAACCGTCGGATCTACACACCGTGGGAATTATGCTTTTCAATACAGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211177 127 + 637652 CCGCACAGCCCAGCAAAAAGCACAGTTGCTGGTGGTGGTTT----TGCTCATTGACTACCTCCCACCAAATGACTTAGTATTTCT-GAACCGTCGGATCTACACACCGTGGGAATTA-GCTTTTCAATACAAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010596 127 + 81552678 CCGCACAGCCCAGCGAAAAGCACAGTTGCTGGTGGTGGTTT----TGTTCATTGACT-CTTCCCACCAGATGACTTAGTATTTCT-GAACCATCGGATCTACGCGCTGTGGGAATTATGCTTTGCAATACAGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3269670 128 + 108979918 TCGCGCAGCCCAGCGGAAAGAACAGTTGCTGGTGGTGGTTT----TGCTCGTTGACTGCTTCCCACCAAATGACTCAGTATTTCT-GAACCGTCGGATCTATGCGCTGTGGGAACTGTGCTTTGCAATACAGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4982759 128 - 111193037 TCGCGCAGCCCAGCGGAAAGAACAGTTGCTGGTGGTGGTTT----TGCTCGTTGACTGCTTCCCACCAAATGACTCAGTATTTCT-GAACCGTCGGATCTATGCGCTGTGGGAACTGTGCTTTGCAATACAGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3377230 128 + 3644372 CCGCGCAGCCCAGCGGAAAAAACAGTTGCTGGTGGTGGTTT----TGCTCGTTGACTGCTTCCCACCAAATGACTCAGTATTTCT-GAACCGTCGGATCTATGCGCTGTGGGAACTGTGCTTTGCAATACAGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3330509 128 - 10304083 CCGCACAGCCCAGCGGAAAGAACAGTTGCTGGTGGTGGTTT----TGCTCGTTGACTGCTTCCCACCAAATGACTCAGTATTTCT-GAACCGTCGGATCTATGCGCTGTGGGAACTGTGCTTTGCAATATAGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3414338 128 - 107702431 CCGCGCAGCCCAGCGGAAAGAACAGTTGCTGGTGGTGGTTT----TGCTCGTTGACTGCTTCCCACCAAATAACTCAGTATTTGT-GAACCGTCGGATCTATGCGCTGTGGGAACTGTGCTTTGCAATACAGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 957587 128 + 1565135 CCGCGCAGCCCAGCGGAAAGAACAGTTGCTGGTGGTGGTTT----TGCTCGTTGACTGCTTCCCACCAAATGACTCAGTATTTCT-GAACCGTCGGATCTATGCGCTGTGGGAACTGTGCTTTGCAATACAGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320772 128 - 13651311 CCGCACAGCCCAGCAGAAAGAACAGTTGCTGGTGGTGGTTT----TGCTCATTGACTGCTTCCCACCAAATGACTCAGTATTTCT-GAACCGTCGGATCTATGCGCTGTGGGAACTGTGCTTTGCAATACAGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3405136 116 - 108792865 CCACACAGCCCGGCAAAGAGCTCAGTTGCTGGTGGTGGTTT----TGC------------TCCCACCAAATGACTTAGTATTTCT-CAGCCATCGGATCTGCGCGCTGTGGGAATTAGGCCTTGCCATTCCGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068603 129 - 7082604 CCACACAGCCCCTTGAAGAGCTCAGTCGCTGGTGGCGGTTT----TGCTCATTGACTGCTTCCCACCGAATGACTTAGTATTTCTAAAACCGTCGGATCTGCACGCTGTGGGAATTATGCCTTGCCATTCCGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554500 128 + 5243153 GCACACAGCCCGGCGAAGAGCTCAGTTGCTGGTGGTGGTTT----TGCTCGTTGACTGCTTCCCACCAAACGACTTAGTATTTCT-CAACCGTCGGATCTGCACGCTGTGGGAATTATGCCTTGCCATTCCGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888118 106 - 1938448 CCACACAGCCCGGCGAAGGGCTCAGTTG--------------------------ACTACTTCCCACCAAACGACTTAGTATTTCA-CAACCGTCGGATCTGTGAGCTGTGGGAATTATGCCTTGCCATTCCGT i aotNan1.NW_018507213v1 C 0 C 0 s mm10.chr12 91396588 111 - 120129022 CTGCACAGCCCC-TGAAAACCATGCTTTCTG--------------TGGACATATGTCATTTCCTGCCACAGGACATAGTATTTCT-GAACCACTGACTATGTGCACTGGGG------TACTTTACAGAGTAAT i mm10.chr12 I 2790 C 0 s dasNov3.JH580157 510851 121 + 2232271 CTGCACAATCCAG-----------GTTCTTCTCGGTGACATTAGGTGATCAGTGGCTGCTTTCCACCAAGTGACTTAGTAATTTT-GAACCCTTGAATGCATGTGCTGTCAGAATTATGCTTTGCAAGACAGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2610075 1244 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 921788 696 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=441895.000000 s hg38.chr2_KI270769v1_alt 13593 32 + 120616 TTCTAG-GACTGGATTGTATCCAGGGGTAGGAT s panTro5.chr2A 3450926 32 + 111504155 TTCTAG-GACTGGGTTGTATCCAGGGGTAGGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337698 32 + 114371477 TTCTAG-GACTGGGTTGTATCCAGGGGTAGGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211304 32 + 637652 TTCTAG-GACTGGGTTGTATCCAGGGGTAGGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010723 32 + 81552678 TTCTAG-GACTGGGTTGTATCCAAGGGTAGGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3269798 32 + 108979918 TTCTAG-GACTGGGTTGTATCCAGGGGTAGGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4982887 32 - 111193037 TTCTAG-GACTGGGTTGTATCCAGGGGTAGGAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3377358 32 + 3644372 TTCTAG-GACTGGGTTGTATCCAGGGGTAGGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3330637 32 - 10304083 TTCTAG-GACTGGTTTGTATCCAGGGGTAGGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3414466 32 - 107702431 TTCTAG-GACTGGGTTGTATCCAGGGGTAGGAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 957715 32 + 1565135 TTCTAG-GACTGGGTTGTATCCAGGGGTAGGAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320900 32 - 13651311 TTCTAG-GACTGGGTTGTATCCAGGGGTAGGAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3405252 31 - 108792865 TTCTAG-GA-TGGGTGGAATCCAGGAGTAGGAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068732 31 - 7082604 TTCTAG-GA-TGGGTGGTATCCAGGAGTAGGAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554628 31 + 5243153 TTCTAG-GA-TGGGTGGTATCCAGGAGTAGGAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888224 30 - 1938448 TT-TAG-GA-TGGGTGGTATCCACGAGTGGGAT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2611319 32 - 159902609 TTCTAG-GACTGGGTTGTATCCAGGAGTAGGAT i micMur3.chr8 I 1244 C 0 s proCoq1.NW_012151163v1 922484 32 + 1238772 TTCTAG-GACTGGGTTGTATCCAGGAGTAGGAT i proCoq1.NW_012151163v1 I 696 C 0 s mm10.chr12 91396699 32 - 120129022 GACTAG-AACTGGGCTATATCCAGCAGTGAGAt i mm10.chr12 C 0 I 133 s dasNov3.JH580157 510972 33 + 2232271 TTATAATAACCGCATTGTATCCAGGGGTAGGAT i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=168447.000000 s hg38.chr2_KI270769v1_alt 13625 14 + 120616 TT-CCCATGAGAAGA---------------- s panTro5.chr2A 3450958 14 + 111504155 TT-CCCATGAGAAGA---------------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337730 14 + 114371477 TT-CCCATGAGAAGA---------------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211336 14 + 637652 TT-CCCATGAGAAGA---------------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010755 15 + 81552678 TTGCCCATGAGAAGA---------------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3269830 15 + 108979918 TTGCCCATGAGAAGA---------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4982919 15 - 111193037 TTGCCCATGAGAAGA---------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3377390 15 + 3644372 TTGCCCATGAGAAGA---------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3330669 15 - 10304083 TTGCTCATGAGAAGA---------------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3414498 15 - 107702431 TTGCCCATGAGAAGA---------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 957747 15 + 1565135 TTGCCCATGAGAAGA---------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320932 15 - 13651311 TTGCCCATGAGAAGA---------------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3405283 15 - 108792865 GTGCCCGTGAGAAGA---------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068763 15 - 7082604 TTGCCCATGAGAAGA---------------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554659 15 + 5243153 TTGCCCATGAGAAGA---------------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888254 15 - 1938448 TTGCCCATGAGAAGA---------------- i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2611351 15 - 159902609 TTGCCCATGAGAAGA---------------- i micMur3.chr8 C 0 I 87 s proCoq1.NW_012151163v1 922516 15 + 1238772 TTGCCCATAAGAAGA---------------- i proCoq1.NW_012151163v1 C 0 I 3 s dasNov3.JH580157 511005 31 + 2232271 TTACCTATAATGGAAATCACTCAAGAAGTCA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91396731 133 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=34400.000000 s hg38.chr2_KI270769v1_alt 13639 3 + 120616 CCT s panTro5.chr2A 3450972 3 + 111504155 CCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337744 3 + 114371477 CCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211350 3 + 637652 CCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010770 3 + 81552678 CCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3269845 3 + 108979918 CCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4982934 3 - 111193037 CCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3377405 3 + 3644372 CCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3330684 3 - 10304083 CCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3414513 3 - 107702431 CCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 957762 3 + 1565135 CCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320947 3 - 13651311 TCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3405298 3 - 108792865 CCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068778 3 - 7082604 CCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554674 3 + 5243153 CCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888269 3 - 1938448 CCT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 922534 3 + 1238772 TTT i proCoq1.NW_012151163v1 I 3 C 0 s dasNov3.JH580157 511036 3 + 2232271 TTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2611366 87 - 159902609 I e mm10.chr12 91396731 133 - 120129022 I e canFam3.chr17 2009990 1 + 64289059 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=928053.000000 s hg38.chr2_KI270769v1_alt 13642 85 + 120616 TATATCTGATGGGATTCA------AACAAACAAGTTCTCACTTGTGTTTCTTAG------TGTATTCATTGAGCAAACACATATTAAGCCTCTTCTC s panTro5.chr2A 3450975 85 + 111504155 TATATCTGATGGGATTCA------AACAAACAAGTTCTCACTTGTGTTTCTTAG------TGTATTCATTGAGCAAACACATATTAAGCCTCTTCTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337747 85 + 114371477 TATATCTGATGGGATTCA------AACAAACAAGTTCTCACTTGTGTTTCTTAG------TGTATTCATTGAGCAAACACATATTAAGCCTCTTCTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211353 85 + 637652 TATATCTGATGGGATTCA------AACAAACAAGTTCTCACTTGTGTTTCTTCG------TGTATTCATTGAGCAAATACATATTAAGCCTCTTCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010773 85 + 81552678 TATATCTGATGGGATTGA------AACAAACAAGTTCTCACTTGGGTTTCTTCA------TGTATTCATTGAGCAAACACATATTAAGCCTCTTCTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3269848 85 + 108979918 TATATCTGATGGGATTGA------AACAAACAAGTTCTCAATTGTGTTTCTTCG------TGTATTCATTGAGCAAACACTTATTAAGCCTCTTCTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4982937 85 - 111193037 TATATCTGATGGGATTGA------AACAAACAAGTTCTCAATTGTGTTTCTTCG------TGTATTCATTGAGCAAACACTTATTAAGCCTCTTCTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3377408 85 + 3644372 TATATCTGATGGGATTGA------AACAAACAAGTTCTCAATTGTGTTTCTTCG------TGTattcattgagcaaacacttattaagcctcttatc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3330687 85 - 10304083 TATATCTGATGGGATTGA------AACAAACAAGTTCTCAATTGTGTTTCTTCG------TGTATTCATTGAGCAAACACTTATTAAGCCTCTTCTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3414516 85 - 107702431 TATATCTGATGGGATTGA------AACAAACAAGTTCTCAATTGTGTTTCTTCG------TGTATTCATTGAGCAAACACTTATTAAGCCTCTTCTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 957765 85 + 1565135 TATATCTGATGGGATTGA------AACAAACAAGTTCTCAATTGTGTTTCTTCG------TGTATTCATTGAGCAAACACTTATTAAGCCTCTTCTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3320950 85 - 13651311 TATATCTGATGGTAGTGA------ACCAAACAAGTTCTCCATTGTGTTTCTTCG------TGTATTCATTGAGCAAGCACTTATTAAGCCTCTTCTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3405301 85 - 108792865 TGTATCTGATGGAATTGA------AGCAAACAAGTTCTCAATTGTGTTTCTTTG------TGTATTCATTGAGCAAACACATACTAAGCCGCTTCTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068781 74 - 7082604 TGTATTTGATGGAATTGA------AACAAACAAGTTCTCAATTGTGT-----------------TTCATTGAGCAAACACATACTAAGCCTCTTCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554677 79 + 5243153 TGTATCTGATGGAATTGA------AACACACGAGTTCTCAATTGTGTTTCTTTG------TGT-TTCATTGAGCAAACACAT-----GCCTCTTCTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888272 85 - 1938448 TGTGTCTGATGGAATTGA------AACAAACACGTTCTCAATTGTGTTTCTTTG------TGTATTCATTGAGCAAACACATACTAAGCCTCTTGTC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 922537 82 + 1238772 CATATCTGATGGAATTGA------AACGAA----TTCTCAATTATGTTTCTTCAGTT-TTTGTattcattcagcaaacac--attaagcctcttg-- i proCoq1.NW_012151163v1 C 0 C 0 s mm10.chr12 91396864 85 - 120129022 tgtGTCTGATGGACTTGA------AACAAA----TTCCATATTAGGTTTTCCAGTTTATATGTGTTTATTCAGCAAACACATATCAGGCTTTTCT-- i mm10.chr12 I 133 C 0 s dasNov3.JH580157 511039 89 + 2232271 TATATCCAATGAAACTGGCATTTTAACAAATGAA--CTCAATTGTTTCTCCTAC------tttattcattcagtgaacatgcagtaagccttttgtg i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2611366 87 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=1291518.000000 s hg38.chr2_KI270769v1_alt 13727 114 + 120616 TTTCCAGCAATAACAATAAAGGTTGCTAAGCTAGTGCTCTTGCTCCGTGAAGTTCTGCCTTCTTAACCATTTATGGGAT---TTACTCAGATTTAGAAGTGCTATTC---TATTATTTTT s panTro5.chr2A 3451060 114 + 111504155 TTTCCAGCAATAACAATAAAGGTTGCTAAGCTAGTGCTCTTGCTCCGTGAAGTTCTGCCTTCTTAACCATTTATGGGAT---TTACTCAGATTTAGAAGTGCTATTC---TATTATTTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337832 114 + 114371477 TTTCCAGCAATAACAATAAAGGTTGCTAAGCTAGTGCTCTTGCTCCGTGAAGTTCTGCCTTCTTAACCATTTACGGGAT---TTACTCAGATTTAGAAGTGCTATTC---TATTATTTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211438 114 + 637652 TTTCCAGCAATAACAATAAAGGTTGCTAAGCTAGTGCTCTTGCTCCGTGAAGTTCTGCCTTCTTAACCATTTATGGCAT---TTACTCAGATTTAGAAGTGCTATTC---TATTATTTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010858 114 + 81552678 TTTCGAGCAATAACAATAAAGGTTGCTAAGCTAGCGCTCTTGCTCAGTGAAGTTCTGCCTTCTTAACCATTTATGGCAT---TTACTCAGATTTAGAAGTGCTGTTC---TATTACTTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3269933 111 + 108979918 TTTCAAGCAGTAAC---AAAGTTTGCTAAGTTAGGGCTCTTGCTCCGTGAAGTTCTGC---CTTAACCATTTATGGCGT---TTACTCAGACTTAGAAGTCCTTCTCTGTTATTATTTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983022 111 - 111193037 TTTCAAGCAGTAAC---AAAGTTTGCTAAGTTAGGGCTCTTGCTCCGTGAAGTTCTGC---CTTAACCATTTATGGCGT---TTACTCAGACTTAGAAGTCCTTCTCTGTTATTATTTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3377493 111 + 3644372 tttcaagcagtaac---aaagtttgctaagttagggctcttgctccgtgaagttcTGC---CTTAACCATTTATGGCGT---TTACTCAGACTTAGAAGTCCTTCTCTGTTATTATTTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3330772 114 - 10304083 TTTCGAGCAGTAACAGTAAAGTTTGCTAAGTTAGGGCTCTTGCTCCGTGAAGTTCTGC---CTTAACCATTTATGGCGT---TTACTCAGACTTAGAAGTCCTTCTCTGTTATTATTTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3414601 114 - 107702431 TTTCAAGCAGTAACAGTAAAGTTTGCTAAGTTAGGGCTCTTGCTCCGTGAAGTTCTGC---CTTAACCATTTATGGCGT---TTACTCAGATTTAGAAGTCCTTCTCTATTATTATTTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 957850 114 + 1565135 TTTCAAGCAGTAACAGTAAAGTTTGCTAAGTTAGGGCTCTTGCTCCGTGAAGTTCTGC---CTTAACCATTTATGGCGT---TTACTCAGACTTAGAAGTCCTTCTCTATTATTATTTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321035 114 - 13651311 TTTCAAGCAGTAACAGTAAAGTTTGCTAAGTTAGGGCTCTTGCTCCGTGAAGTTCTGC---CTTAACCATTTATGGCGT---TTACTCAGATTTAGAAGTTCTTCTCTATTATTATTTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3405386 117 - 108792865 TTTCAAGCAATTACAGTAAAGGTTGCTAAGATAGGGCTCTTGGTCTGTGAAATTCTGCCTTCTTAACCATTTATGGTAT---TTACTCAGATTTAGAAGTGCTACTCTGTTATTATTTTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068855 117 - 7082604 TTTTAAGCAATAACAGTAAAGGTTGCTAAGATAGGGCTCTTGGTCCATGAAGTTCTGCCTTCTTAACCATTTATGGTAT---TTACTCAGATTTAGAAGTGCTACTCTGTTATTATTTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554756 117 + 5243153 TTTCAAGCAATAACAGTAAAGGTTGCTAAGATAGGGCTCTTGTTCCGTGAAGTTCTGCCTTCCTAACCATTTATGGTAT---TTACTCAGATTTAGAAGTGCTACTCTGTTATTATTTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888357 115 - 1938448 TTTCAAGCAGTAACAGTAAAGATTGCTAAGATAGGGCTCTTGGTCTGTGAAGTTCTGCCTTCTTAACCATTTATGGTAT---TTACTC--ATTTAGAAGTGCTACTCTGTTATTATTTTT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2611453 107 - 159902609 tttcaagcaataacggtaaaggttgctaagatacggctcttgctgcatgaagttcTGCCCTCTTAACCACTTATGGGGT---TTACTCAGATTTAGAAGTACTATGC---TAT------- i micMur3.chr8 I 87 C 0 s proCoq1.NW_012151163v1 922619 117 + 1238772 tttcaagcaataacagtaaaggttgctaagatacagttcttgctgcatgaagttcTGCCTTCTTAACCACTTACGGAGTATATTACTCAGATTTAGAAGTACTATGA---TATTATTTTT i proCoq1.NW_012151163v1 C 0 I 52 s mm10.chr12 91396949 81 - 120129022 --------------------GGCTG----------GCCCTCACTCTCTGAAGGTCTACTTTCACAGTCACTTGTAAAGT---GGACTCTGATTTAGAGATGTGA------TACTGTTTTT i mm10.chr12 C 0 I 1 s dasNov3.JH580157 511128 83 + 2232271 ttccaagcaat------aaagattgctacgacatacttcctgcttc---------------cttaaCCATTTATGGAGT---TTACTGAGATTTAGAAGTACTG------TAT------- i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=821581.000000 s hg38.chr2_KI270769v1_alt 13841 88 + 120616 AATTTACTTATTGCTGACTTGAAGCTCATACACTATTTTTAAAAGAAGTATATATTCCAGATTCACAAATTTATTGTAACTCTT-ATGA---- s panTro5.chr2A 3451174 88 + 111504155 AATTTACTTATTGCTAACTTGAAGCTCATACACTATTTTTAAAAGAAGTATATATTCCAGATTCACAAATTTATTGTAACTCTT-ATGA---- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3337946 88 + 114371477 AATTTACTTATTGCTAACTTGAAGCTCATACACTATTTTTAAAAGAAGTATATATTCCAGATTCACAAATTTATTGTAACTCTT-ATGA---- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211552 88 + 637652 AATTTACTTATTGCTGACTTGAAGCTCATACACTATTTTTAAAAGAAGTATATATTCCAGATTCACAAATTTATTGTAACTCTT-ATGA---- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3010972 88 + 81552678 AATTTACTTATTGCTGACTTGAAGCTCATACACTATTTTTAAAAGAAGTATATATTCCAGATTCACAAATTTATTGTAACTCTT-ATGA---- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270044 88 + 108979918 CATTTACTTGTTGCTGACTTGAAGCTCATACACTATTTTTGAAAGAAGTATATATTCCAGATTCACAAATGTATTGTAACTCTT-ACAA---- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983133 88 - 111193037 CATTTACTTGTTGCTGACTTGAAGCTCATACACTATTTTTGAAAGAAGTATATATTCCAGATTCACAAATGTATTGTAACTCTT-ACAA---- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3377604 83 + 3644372 CATTTACTTGTTGCTGACTTGAAGCTCATACACTATTTTTGAAAGAAGTATATATTCCAGATTCACAAA-----TGTAACTCTT-ACGA---- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3330886 88 - 10304083 AATTTACTTGTTGCTGACTTGAAGCTGATACACTATTTTTGAAAGAAGTATATATTCCAGATTCACAAATGTATTGTAACTCTT-ACGA---- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3414715 88 - 107702431 AATTTACTTGTTGCTGACTTGAAGCTCATACACTATTTTTGAAAGAAGTGTATATTCCAGATTCACAAATGTATTGTAACTCTT-ACGA---- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 957964 89 + 1565135 AATTTACTTGTTGCTGACTTGAAGCTCATACACTATTTTTGAAAGAAGTATATATTCCAGATTCACAAATGTATTGTAACTCTTAACGA---- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321149 88 - 13651311 AGTTTACTTGTTGCTGACTTGAAGCTCATACACTATTTTTAAAAGAAGTATATATTCCAGATTCACAAATTTATTGTAACTCTT-AGGA---- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3405503 88 - 108792865 AATTTACTTGTCACTGACTTAAAGATCATACACTATGTTTAAAGGAAGTATAAATTCCAGCTTCACACATTTATTCTAACTCTT-GTGA---- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3068972 88 - 7082604 AATGTACTCATCACTGACATGAAGATCATATACTATTTTTAAAGGAAGTATAACTTCCAGATTCACGCATTTATTCTAAGTCTT-GTGA---- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554873 88 + 5243153 AATTTGCTTGTCACTGACTTGAAGATCATACACTATTTTTAAAGGAAGTATAAATTCCAGATTCACACATTTATTCTAACTCTT-GTGA---- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888472 88 - 1938448 AGTTTACTTGTCACTGACTTGAAGATCATACACTATTTTTAAAGGAAGTATAAATTCCAGATTCACACATTTATTCTAACTCTT-GTGA---- i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2611560 53 - 159902609 -----------------------------------TTTTTTAAGGAAGAATACATTCCATATTCACAAATTTATTATAACTCAA-GGGT---- i micMur3.chr8 C 0 I 2 s mm10.chr12 91397031 36 - 120129022 ------------------------------------------AAAAACTTCACATCCTAGACTCACTGGCCTGAGGGG--------------- i mm10.chr12 I 1 C 0 s dasNov3.JH580157 511211 62 + 2232271 ------------------------------CATTGTTTTTAAAATAAGTGCACAGTCAAGATTCACAAATTTATTGTTATTCAA-GAGTTAGA i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 922736 52 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=379287.000000 s hg38.chr2_KI270769v1_alt 13929 25 + 120616 TTCTTCATCAGTGTCTTCAGACACA s panTro5.chr2A 3451262 25 + 111504155 TTCTTCATCAGTGTCTTCAGACACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338034 25 + 114371477 TTCTTCATCAGTGTCTTCAGACACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211640 25 + 637652 TTCTTCATCAGTGTCTTCAGACACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011060 25 + 81552678 TTCTTCATCAGTGTCTTCAGACACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270132 25 + 108979918 TTCTCCATCGGTGTCTTCAGACACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983221 25 - 111193037 TTCTCCATCGGTGTCTTCAGACACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3377687 25 + 3644372 TTCTCCATCGGTGTCTTCAGACACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3330974 25 - 10304083 TTCTCCATCGGTGTCTTCAGACACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3414803 25 - 107702431 TTCTCCATCGGTGTCTTCAGACACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958053 25 + 1565135 TTCTCCATCGGTGTCTTCAGACACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321237 25 - 13651311 TTCTCCATCGGTGTCTTCAGACACA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3405591 25 - 108792865 TTCTTCATGAGTGTCTTCAGACACA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069060 25 - 7082604 TTCTTCATCAGTGTCTTCAGACACA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554961 25 + 5243153 TTCTTCATCAGTGTCTTCAGACACA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888560 25 - 1938448 TTCTTCATCAGTGTCTTCAGACACA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2611615 25 - 159902609 TTTTTCATCAGTGTCTTCAGACACA i micMur3.chr8 I 2 I 377 s proCoq1.NW_012151163v1 922788 25 + 1238772 TTCTTCATCAGTGTCTTCAGACACA i proCoq1.NW_012151163v1 I 52 I 373 s mm10.chr12 91397067 25 - 120129022 CTCTTCATCAGCATCTTCAGCCCTG i mm10.chr12 C 0 I 1 s dasNov3.JH580157 511273 25 + 2232271 CACTAAGCCAGTGTCTTCAGACTCA i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2009990 1 + 64289059 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=3092731.000000 s hg38.chr2_KI270769v1_alt 13954 335 + 120616 --GACACAAATTCAGCTGCACTCCTAACCCATGGCAGTGAA---------GTT-------TCTCTTTTCTCTCCTCATGCCCTGAATCCACTTCCCATAGGGAAGCTGCTTGTACTACATCTTGAATACCAGTTCCCACAACCCTGCTTCTGTAACTGGCGGGAATCCCGAGAGCTCCAGCATGA-ATCCCTCAGGCCTC---TTGCCCCAGAGCAA-AGT-TCCCAGCTGTTCCCTGACTTGCAGAGACTGAAGGACCCTTCCAGACTCAGAGAAGCCAAACCTTCCCCAGAGACGCTTCCCTCTCCTCCTTCCTCTGCACCACGCTCCCCAAGCTGTGGAACTGT--CACTCACATGGT s panTro5.chr2A 3451287 335 + 111504155 --GACACAAATTCAGCTGCACTCCTAACCCACGGCAGTGAA---------GTT-------TCTCTTTTCTCTCCTCATGCCCTGCATCCACTTCCCATAGAGAAGCTGCTTGTACTACATCTTGAATACCAGTTCCCACAACCCTGCTTCTGTAACTGGCGGGAATCCCGAGAGCTCCAGCATGA-ATCCCTCAGGCCTC---TTGCCCCAGAGCAA-AGT-TCCCAGCTGTTCCCTGACTTGCAGAGACTGAAGGACCCTTCCAGACTCAGAGAAGCCAAACCTTCCCCAGAGACGCTTCCCTCTCCTCCTTCCTCTGCACCACGCTCCCCAAGCTGTGGAACTGT--CACTCACATGGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338059 335 + 114371477 --GACACAGATTCAGCTGCACTCCTAACCCACGGCAGTGAA---------GTT-------TCTCTTTTCTCTCCTCATGCCCTGCATCCACTTCCCATAGAGAAGCTGCTTGTACTACATCTTGAATACCAGTTCCCACAACCCTGCTTCTGTAACTGGCGGGAATCCCGAGAGCTCCAGCATGA-ATCCCTCAGGCCTC---TTGCCCCAGAGCAA-AGT-TCCCAGCTGTTCCCTGACTTGCAGAAACTGAAGGACCCTTCCAGACTCAGAGAAGCCAAACCTTCCCCAGAGACGCTTCCCTCTCCTCCTTCCTCTGCACCACGCTCCCCAAGCTGTGGAACTGT--CACTCACATGGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211665 333 + 637652 --GACACAAATTCAGCTGCACTCCTAACCCACGGCAGTGAA---------GTT-------TCCCTTTTCTCTCCTCATGCCCTGCATCCACTTCCCACAGAGAAGCTGCTTGTACCACATCTTGAATACCAGTTCCCACAACCCTGCTTCTGTAACTGGCAGGAATCCCGAGAGCTCCAGCATGA-ATCCCTCAGGCCTC---TTGCCCCAGAGCAA-AGT-TCCCAGCTGTTACCCGACTTGCAGAGACTGAAGGACCCTTCCAGACTC--AGAAGCCAAACCTTCCCCAGAGACGCTTCCCTCTCCTCCTTCCTCTGCACCACGCTCCCCAAGCTGTGGAACTGT--CACTCACATGGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011085 337 + 81552678 --GACACAAATTCAGCTGCACTCCTAACCCACGGCAGTGAA---------GTT-------TCCCTTTTCTCTCCTCATGCCCTGCATCCACTTCCCACAGAGAAGCTGCTTGTACCACATCTTGAAAACCAGTTCCTACAACCCTGCTTCTCTAACTGGCGGGAATCCCGAGAGCTCCAGCATGA-ATTCCTCAGGCCTCT-TTTGCCCCAGAGCAA-AGT-TCCCAGCTGTTCCCCGATTTGCAGAGACTGAAGGACCCTTCCAGACTCAGAGAAGCCAAATCTTCCCCAGAGACGCTTCCCTCTCCTCCTTCCTTTGCATCACACTCCCCAAGCTGTGGAACTGT--CACTCACATGGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270157 335 + 108979918 --GACCCAAATTCAGCTGCACTCCTAGCCCACAGCAGTGAA---------GTT-------TCCCTTTTCTCTCCCCATCACCTGCATCCACTTCCCGCAGAGAAGCTGCTTGTGCCACATCTTGAATACCAGTTCCCACAGCCCTGCTTCTCTAACTGGTGGGAATCCTGAGAGCTCCAGCATGA-ATCCCTCAGGCCTCT-TTTGCCCCAGAGCAA-AGT-TCCCAGGGGTTCCCCCACTTGCAGAGACTGAAGGACGCTTCCAGACTC--AGAAACCAAACCTTCCCCAGAGACGCTTCACTCTCCTCCTTCCTCTGCACCACGCTCCCCAGGCTGTGGAACTGT--CACTCACCTGGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983246 335 - 111193037 --GACCCAAATTCAGCTGCACTCCTAGCCCACAGCAGTGAA---------GTT-------TCCCTTTTCTCTCCCCATCACCTGCATCCACTTCCCGCAGAGAAGCTGCTTGTGCCACATCTTGAATACCAGTTCCCACAGCCCTGCTTCTCTAACTGGTGGGAATCCTGAGAGCTCCAGCATGA-ATCCCTCAGGCCTCT-TTTGCCCCAGAGCAA-AGT-TCCCAGGGGTTCCCCCACTTGCAGAGACTGAAGGACGCTTCCAGACTC--AGAAACCAAACCTTCCCCAGAGACGCTTCACTCTCCTCCTTCCTCTGCACCACGCTCCCCAGGCTGTGGAACTGT--CACTCACCTGGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3377712 334 + 3644372 --GACCC-AATTCAGCTGCACTCCTAGCCCACAGCAGTGAA---------GTT-------TCCCTTTTCTCTCCCCATCACCTGCATCCACTTCCCGCAGAGAAGCTGCTTGTACCACATCTTGAATACCAGTTCCCACAGCCCTGCTTCTCTAACTGGTGGGAATCCTGAGAGCTCCAGCATGA-ATCCCTCAGGCCTCG-TTTGCCCCAGAGCAA-AGT-TCCCAGGGGTTCCCCCACTTGCAGAGACTGAAGGACGCTTCCAGACTC--AGAAACCAAACCTTCCCCAGAGACGCTTCACTCTCCTCCTTCCTCTGCACCACGCTCCCCAGGCTGTGGAACTGT--CACTCACCTGGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3330999 335 - 10304083 --GACCCAAATTCAGCTGCACTCCTAGCCCACAGCAGTGAA---------GTT-------TCCCTTTTCTCTCCCCATCACCTGCATCCACTTCCCACAGAGAAGCTGCTTGTACCACATCTTGAATACCAGTTCCCACAGCCCTGCTTCTCTAACTGGTGGGAATCCTGAGAGCTCCAGCATGA-ATCCCTCAGGCCTCT-TTTGCCCCAAAGCAA-AGT-TCCCAGGGGTTCCCCCACTTGCAGAGACTGAAGGACCCTTCCAGACTC--AGAAACCAAACCTTCCCCAGAGATGCTTCATTCTCCTCCTTCCTCTGCACCACGCTCCCCAGGCTGTGGAACTGT--CACTCACCTGGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3414828 335 - 107702431 --GACCCAAATTCAGCTGCACTCCTAGCCCACAGCAGTGAA---------GTG-------TCCCTTTTCTCTCCCCGTCACCTGCATCCACTTCCCGCAGAGAAGCTGCTTGTACCACATCTTGAATACCAGTTCCCACAGCCCTGCTTCTCTAACTGGTGGGAATTCTGAGAGCTCCAGCATGA-ATCCCTCAGGCCTCT-TTTGCCCCAGAGCAA-AGT-TCCCAGGGGTTCCCCCACTTGCAGAGACTGAAGGACCCTTCCAGACTC--AGAAACCAAACCTTCCCCAGAGACACTTCACTCTCCTCCTTCCTCTGCACCACGCTTCCCAAGCTGTGGAACTGT--CACTCACCTGGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958078 335 + 1565135 --GACCCAAATTCAGCTGCACTCCTAGCCCACAGCAGTGAA---------GTT-------TCCCTTTTCTCTCCCCGTCACCTGCATCCACTTCCCGCAGAGAAGCTGCTTGTACCACATCTTGAATACCAGTTCCCACAGCCCTGCTTCTCTAACTGGTGGGAATCCTGAGAGCTCCAGCATGA-ATCCCTCAGGCCTCT-TTTGCCCCAGAGCAA-AGT-TCCCAGGGGTTCCCCCACTTGCAGAGACTGAAGGACCCTTCCAGACTC--AGAAACCAAACCTTCCCCAGAGACGCTTCACTCTCCTCCTTCCTCTGCACCACGCTCCCCAGGCTGTGGAACTGT--CACTCACCTGGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321262 334 - 13651311 --GACCCAAATTCAGCTGCACTCCTAGCCCACAGCAGTGAA---------GTT-------TCCCTTTTCTCTCCCCATCACCTGCATCCACTTTCCGCAGAGAAGCTGCTTGTACCACATCTTAAATACCAGTTCCCACAGCCCTGCTTCTCTAACTGGTGGCAAT-CTGAGAGCTCCAGCATGA-ATCCCTCAGGCCTCT-TTTGCCCCAGAGCAA-AGT-TCCCAGGGGTTCCCCCACTTGCAGAGACTGAAGGACCCTTCCAGACTC--AGAAACCAAACCTTCCCCAGAGACGCTTCACTCTCCTCCTTCCTCTGCACCATGCTCCCCACGCTGTGGAGCTGT--CACTCACGTGGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3405616 317 - 108792865 --GACACAAATTCAGCTGCGCTCCCAACCTCCGGCAGTGAA---------ATT-------TCCCTTTTCTCTCCTTATGCCCTGTATTCGCTTCCCACAGAGAAGCTACTGGTACCACATCTTGAATACCAGTTCCCACAAGGCTGGGTCTCTAACTGGTGGGAATCCCGAGAGCTCCAGCA----------------------TGTCCCAGAGCAG-AGT-TCCCAGCTGTTCCCCACCTTGCAGAGACCGAAGAACCCTTCCAGAGTCAGAGAAGCCAAACCCTCCCCCGGGACACTCCCGTCTCCTTCTTCCTCTGCACCACGCTGCCCAGGCTGTGGAATTGT--CACGCACATGAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069085 292 - 7082604 --GACA------------------CAGCCTCCGGCAGTGAA---------ATT-------TCCCTTTTCTCTCCCCATGCCCTGTACCCACTTCCCACAGAGAAGCTGCTGGTACCACATCTTGAATAGCAGATCCGACAGGCCCGGGTCTCTAACTGGTGGGAATCCCGAGAGCTCCAGCA----------------------TGCCCCAGAGCAG-AGT-TCCCAGCTGTTCCCCACCTTGCAGAGACTGGAGAACCCTTCCAGAGTCAGAGAAGCCACACCCTCCCCCGGGACACTCCCATCTCCTTCTTCCTC-------AGCTGCCCAGGCTGTGGAATTGT--CACTCACATGAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 554986 297 + 5243153 --GACACAAATTCAGCTGCACTCCCAACCTCCAGCAGTGAA---------ATT-------TCCCTTTTCTCTCCTCATGCCGTGTATCCACTTCCCACAGAGAAGCTGCTGGTACCACATCTTGAATACCAGTTCCCACAAGCCTGGGTCTCTAATTGGTGGGAACCCCGAGAGCTCCAGCA----------------------TGCCCCAGAGCAG-AGT-TCCCAGCTGTTCCCCA--------------------CCTTCCAGGGTCAGAGAAGCCAAACCCTCCTCGGGGACACTCCCGTCTGCCTCTTCCTCCGCACCAGACTGCCCAGGCTGTGGAATTGT--CACTCACATGAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888585 317 - 1938448 --GACACAAACTCAGCTGCACTCCCAACCTCCGGCAGTGAA---------ATT-------TCCCTTTTCTCTCCCCATGCCCTGTATCCACTTCGCACAGAGAAGCTGCTGGTACCACATGTTGAATACCAGTTCCCACAAGGCTGGGTCTCTAACTGGTGGGAATCCCAAGAGCTCCAGCA----------------------TGCCCCAGAGCAG-AGT-TCCCAGCTGTTCCCCACCTTGCAGAGTCCGAAGAACCCTTCCAGAGTCAGAGAAGCCAAACCCTCCCCCAGGACACTCCCGTCTCCTTCTTCCTCTGCACCATGCTGCCCAGGCTGTGGAATTGT--CACTCACATGAT i aotNan1.NW_018507213v1 C 0 C 0 s mm10.chr12 91397093 267 - 120129022 --GAGAC-AACCCAGCT---TTCCTGACCC-TGGTAATGAATATTGGCTTGTT-------TCTTCTCTCTCTTCACTGTGCCTTCACACATT------------GCTGCTTGT-TCAGAGC-TGGATAGCAGTTCCCTGAGTCCAGT---------------------------CACCATGAGGA-ATCCCTTGGGTCTTT-TGTG-CCCAGGGAAG-AG--TCCCAGCTATTCCC---CTTGAAAGGACTGAGAGATCCTTCCAGAGTCTGAGAGGCCAAACCGTCCAT------------CCCTCCCCCTCTCT------------------GCTGTTGTGCTAGAACAATTGTGTGGT i mm10.chr12 I 1 C 0 s dasNov3.JH580157 511298 339 + 2232271 ACAAAAAATATTAAGCTATACACTTGACCAACAGCAGTGAA---------ATTTGGTTTCTCTTTCTTCTTTTTTATTACTCTCCTTCCACATCCTACA--GAAGCTACTTGTACCACATCTTAAATATCAGTTCTCTGAATCATAATTCCCTCACTGATAGGAATCTTAAAATTACCAACATAATATCACTCAGGACTTTCTTTGCCTCAGAGCTGTAGTCTCCCAACTTTTCGCCT-CTTGAAGGGCTAACTGTACCTTTACACAGTCCAAGAGACCAAACCAATCCCAG--------CACTCTTGTAACTCCTCTACTTTACTCTCTCCAGATTATGGAAACAT--TATTAATGAGCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2611640 377 - 159902609 I e canFam3.chr17 2009990 1 + 64289059 I e proCoq1.NW_012151163v1 922813 373 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=453553.000000 s hg38.chr2_KI270769v1_alt 14289 50 + 120616 CACGCAACATACACACACAGG----TCTGTACTCATTAACTC--------GGAGTAAGCGCA s panTro5.chr2A 3451622 50 + 111504155 CACGCAACATACACACACAGG----TCTGTACTCATTAACTC--------GGAGTAAGCGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338394 50 + 114371477 CACGCAACATACACACACAGG----TCTGTACTCATTAACTC--------GGAGTAAGCGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 211998 50 + 637652 CACGCAACATACACACACAGG----TCTGTACTCATTAACTC--------GGAGTAAGCGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011422 50 + 81552678 CACGCAACATACACACACAGG----TCTGTACTCATTAGCTC--------GGAGTAAGCGTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270492 50 + 108979918 CGCCCAGCATACTCACAGAAG----TCTGTACTCGTTAACTT--------GGAGTAAGTGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983581 50 - 111193037 CGCCCAGCATACTCACAGAAG----TCTGTACTCGTTAACTT--------GGAGTAAGTGCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378046 50 + 3644372 CGCCCAGCATACTCACAGAAG----TCTGTACTCGTTAACTT--------GGAGTAAGTGCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331334 50 - 10304083 CGCCCAGCATACTCACAGAAG----TCTGTACTCGTTAACTT--------GGAGTAAGTGCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415163 50 - 107702431 CGCCCAACATACTCACAGAAG----TCTGTACTCATTAACTT--------GGAGTAAGTGCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958413 50 + 1565135 CGCCCAGCATACTCACAGAAG----TCTGTACTCGTTAACTT--------GGAGTAAGTGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321596 50 - 13651311 CGCGCAGCATACTCACAGAAG----TCTGTGCTCCGTAACTT--------GGAGTAAGCGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3405933 46 - 108792865 CACCTAACAT----GCAGAAG----TCTTTACTCATTAACTC--------AGAGGAAGTACA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069377 46 - 7082604 CACCTAACAT----GCAGAAG----TCTTTACTCATTAACTC--------AGAGTAAGTGCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 555283 46 + 5243153 CACCTAACAT----GCAGAAG----TCTTCACTCATTAACTC--------AGAGTAAGTGCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888902 46 - 1938448 CACCTAACAT----GCAGAAG----TCTTTACTCATTAACTC--------AGAGTAAGTGCA i aotNan1.NW_018507213v1 C 0 C 0 s mm10.chr12 91397360 49 - 120129022 CACCAGAAACAAGCACACAGG----TCTTCACTCGATGACCT--------GGAA-GAGTACT i mm10.chr12 C 0 C 0 s canFam3.chr17 2009991 58 + 64289059 CACCAAAAATGCATACAGAAG----TCTTTGTTCTGCACTTCTACATTCAAGAGTAAATGTG i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 511637 54 + 2232271 CACTGAAAATACACATAACAGTATTTCTTTACTCATTAACCA--------GAAATAAACATA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2611640 377 - 159902609 I e proCoq1.NW_012151163v1 922813 373 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=625138.000000 s hg38.chr2_KI270769v1_alt 14339 48 + 120616 AAAACCCAGGCAGAGACCCTCTCC------------------------------TAAAATAGAAGCAGGAAATTATCT s panTro5.chr2A 3451672 48 + 111504155 AAAACCCAGGCAGAGACCCTCTCC------------------------------TAAAATAGAAGCAGGAAATTATCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338444 48 + 114371477 AAAACCCAGGCAGAGACCCTCTCC------------------------------TAAAATAGAAGCAGGAAATTATCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212048 48 + 637652 AAAACCCAGGCAGAGACCCTCTCC------------------------------TAAAATAGAAGCAGGAAATTATCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011472 48 + 81552678 AAAACCCAGGCAGAGACCCTCTCC------------------------------TAAAATAGAAGCGGGAAATTATCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270542 48 + 108979918 AAACCCCAGGCAGAGACCCTCTCC------------------------------TAAAATAGCAGTGGGAAATGATCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983631 48 - 111193037 AAAACCCAGGCAGAGACCCTCTCC------------------------------TAAAATAGCAGTGGGAAATGATCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378096 48 + 3644372 AAAACCCAGGCAGAGACCCTCTCC------------------------------TAAAATAGCAGCGGGAAATGATCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331384 48 - 10304083 AAAACCCAGGCAGAGACCCTCTCC------------------------------TAAAATAGCAGCGGGAAATGATCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415213 48 - 107702431 AAAACCCAGGCAGAGACCCTCTCC------------------------------TAAAATAGCAGCGGGAAATGATCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958463 48 + 1565135 AAAACCCAGGCAGAGACTCTCTCC------------------------------TAAAATAGCAGCGGGAAATGATCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321646 48 - 13651311 AAAACCCAGGCAGAGACCCTCTCC------------------------------TAAAATAGCAGCGGGAAAGGATCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3405979 48 - 108792865 AAAACCCGGGCAGAGACCTTCTCC------------------------------TCAGATAGAAGCAGGAGATGATCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069423 48 - 7082604 AAAACCCAGGCAGAGACCCTCCCC------------------------------TCAAATAAAAGCAGGAGATGATCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 555329 47 + 5243153 GAAACCCAGGCAGAGACC-TCTCC------------------------------TCAAATAGAAGCAGGAGATGGTCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888948 48 - 1938448 AAAACCCAGGCAGAGACCTTCTCC------------------------------TCAACTAGAAGCAGGAGATGATCT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2612017 48 - 159902609 AAAACCCAGGCAGAGACCCTGTCC------------------------------TAAAACAGAGGTGGGAAATTATCT i micMur3.chr8 I 377 I 176 s proCoq1.NW_012151163v1 923186 48 + 1238772 AAAACCCAGGCAGAGACCCTGTCC------------------------------TAAATCAGAGGTAGGAAATTGTCT i proCoq1.NW_012151163v1 I 373 I 223 s mm10.chr12 91397409 47 - 120129022 -GGACCCCAGTGGAGGCCTTGTTC------------------------------CGTAACAGAAGCAGGCAGCTGTCA i mm10.chr12 C 0 C 0 s canFam3.chr17 2010049 76 + 64289059 ACTATCTAGGTAGAGATGCATTCTCAAATACTGATAGGAAAATATTAAAAGGCATAAAATATTAATAGGAAACTCT-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 511691 47 + 2232271 AAAATCCA-TCAGAGACACTATTC------------------------------TAAAATAGAAGTAGAAAATTATCT i dasNov3.JH580157 C 0 C 0 e otoGar3.GL873658 2495030 301 + 5252280 I a score=491870.000000 s hg38.chr2_KI270769v1_alt 14387 58 + 120616 TAGGTGTAGGTGTTT--------GCTGTCTGAATCC-TCTGGTAGCCTGTGAACCACTGGAAAC--TAT s panTro5.chr2A 3451720 59 + 111504155 TAGGTGTAGGTGTTT--------GCTGTCTGAATCCTTCTGGTAGCCTGTGAACCACTGGAAAC--TAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338492 59 + 114371477 TAGGTGTAGGTGTTT--------GCTGTCTGAATCCTTCTGGTAGCCTGTGAACCACTGGAAAC--TAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212096 59 + 637652 TAGGTGTAGGTGTTT--------GCTGTCTGAATCCTTCTGGTAGCCTGTGAACCACTGAAAAC--TAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011520 59 + 81552678 TAGGTGTAGGTGTTT--------GCTATCCAAATGCTTCTGGTAGCCTGTGAACCGCTGGAAAC--TAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270590 59 + 108979918 CAGGTATAGGTGTTT--------GGTCTCCGAATGCTTCTGGTAGCCTGTGAACCACTGGAAAC--TGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983679 59 - 111193037 CAGGTATAGGTGTTT--------GGTCTCCGAATGCTTCTGGTAGCCTGTGAACCACTGGAAAC--TGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378144 59 + 3644372 CAGGTATAGGTGTTT--------GGTCTCCGAATGCTTCTGGTAGCCTGTGAACCACTGGAAAC--TGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331432 59 - 10304083 CAGGTATAGGTGTTT--------GGTCTCCGAATGCTTCTGGTAGCCTGTGAACCACTGGAAAC--TGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415261 59 - 107702431 CAGGTATAGGTGTTT--------GGTCTCCAAATGCTTCTGGTAGCCTGTGAACCACTGGAAAC--TGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958511 59 + 1565135 CAGGTATAGGTGTTT--------GGTCTCCGAATGCTTCTGGTAGCCTGTGAACCACTGGAAAC--TGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321694 59 - 13651311 CTGGTATAGGTGTTT--------GGTATCCGAATGCTTCTGGTAGCCTGTGAACCACTGGAAAC--TGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406027 60 - 108792865 GAACTGTAGGTGTTT---------GTATACGAATGCTGCAGGTGATCTGTGAGCCACTGGAAACTGTGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069471 59 - 7082604 GAACTGTAGGTGTTT--------GGTATACGAATGCTTCAGGTGATCTGTGAGCCACTGGAAAC--TGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 555376 59 + 5243153 GAACTGTAGGTGTTT--------GGTATACGAATGCTTCAGATGACCTGTGAGCCAGTGGAAAC--CGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1888996 61 - 1938448 GAACTGTAGTTGTTT--------GGTATACGAATGCTTCAGGTGATCTGTGAGCCACTGGAAACTGTGT i aotNan1.NW_018507213v1 C 0 C 0 s mm10.chr12 91397456 48 - 120129022 CCGAGGCAGGCATTT--------ATCAGCCCAACCC-------------TGAGTCACCAACACCAGTGT i mm10.chr12 C 0 C 0 s canFam3.chr17 2010125 66 + 64289059 GAACTGCAGGCATGTTAACAC-GAATGGGTAGATGTTTCTGGTGGTCTTTGAACCCCTGGAAAC--TGT i canFam3.chr17 C 0 I 216 s dasNov3.JH580157 511738 58 + 2232271 GAATTACTGGCATTTGAACATGGGGAACATATATGCTTCTGGTAGTCTGTGAGCTACT----------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2612065 176 - 159902609 I e proCoq1.NW_012151163v1 923234 223 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=973818.000000 s hg38.chr2_KI270769v1_alt 14445 87 + 120616 GCTCCCCAAATTGCCTTTCTTCCCCACGTTCTTTACCGTATTTACAGAAG--CGTGTCCTCAAAAAGGTAAACAAGCATCCCTTGCTTA s panTro5.chr2A 3451779 83 + 111504155 CCTCCCCAAATTGCCTTTCTTCCCCACGTCCTTTACCG----TACAGAAG--CGTGTCCTCAAAAAGGTAAACAAGCATCCCTTGCTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338551 83 + 114371477 GCTCCCCAAATTGCCTTTCTTCCCCACGTCCTTTACCG----TACAGAAG--CGTGTCCTCAAAAAGGTAAACAAGCATCCCTTGCTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212155 87 + 637652 GCTCCCCAAATTGCCTTTCTTCCCCACGTCCTTTACCGTATTTACAGAAG--CGTGTCCTCAAAAAGGTAAACAAGCATCCCTTGCTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011579 87 + 81552678 GCTCCCCAAGTTGCCTTTCTTCCCCACATACTTTACCATATTCACAGAAG--CGTGTCCTCAAACAGGTAAGCAAGCATCCCTTGCTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270649 87 + 108979918 GCTCCCCAAATTGCCTTTCTTCCCAACATCTTTTACCACATTTACAGAAG--CGTGTCCTCAAAAAGGTAAACAAGCATCCCTTGCTTA i rheMac8.chr13 C 0 I 14 s macFas5.chr13 4983738 87 - 111193037 GCTCCCCAAATTGCCTTTCTTCCCAACATCTTTTACCACATTTACAGAAG--CGTGTCCTCAAAAAGGTAAACAAGCATCCCTTGCTTA i macFas5.chr13 C 0 I 14 s macNem1.NW_012011978v1 3378203 87 + 3644372 GCTCCCCAAATTGCCTTTCTTCCCAACATCTTTTACCACATTTACAGAAG--CGTGTCCTCAAAAAGGTAAACAAGCATCCCTTGCTTA i macNem1.NW_012011978v1 C 0 I 14 s cerAty1.NW_012000820v1 3331491 87 - 10304083 GCTCCCCAAATTGCCTTTCTTCCCAACATCTTTTACCACATTTACAGAAG--CGTGTCCTCAAAAAGGTAAACAAGCATCCCTTGCTTA i cerAty1.NW_012000820v1 C 0 I 14 s chlSab2.chr14 3415320 87 - 107702431 GCTCCCCAAATTGCCTTTCTTCCCAACATCTTTTACCACATTTACAGAAG--CGTGTCCTCAAAAAGGTAAACAAGCATCCCTTGCTTA i chlSab2.chr14 C 0 I 14 s manLeu1.NW_012104432v1 958570 87 + 1565135 GCTCCCCAAATTGCCTTTCTTCCCAACATCTTTTACCACATTTACAGAAG--CGTGTCCTCAAAAAGGTAAACAAGCATCCCTTGCTTA i manLeu1.NW_012104432v1 C 0 I 14 s colAng1.NW_012118821v1 3321753 87 - 13651311 GCTCCCCAAATTGCCTTTCTTCCCAACATCTTTTACCACATTTACAGAAG--TGTGTCCTCAAAAAGGTAAACAAGCATCCCTTGCTTA i colAng1.NW_012118821v1 C 0 I 14 s calJac3.chr14 3406087 87 - 108792865 GCTCCCCCAATTGCCTTTCTTCCCAGCCTCTTTTACCATATTTACAGTAG--TGCATCCTCAAAAAGGTAAACAAGCATCCCTTGCTTC i calJac3.chr14 C 0 I 14 s saiBol1.JH378218 3069530 87 - 7082604 GCTCCCCCAATTGCCTTTCTTCCCAACATCTTTTACCATGTTTACAGTAG--AGCATCCTCAAAAAGGTAAACAAGCATCGCTTGCTTA i saiBol1.JH378218 C 0 I 14 s cebCap1.NW_016107454v1 555435 87 + 5243153 GCTCCCCCAATTGCCTTTCTTCCCAACATCTTTTACCATATTTACAGCAG--CGCATCCTCAAAAAGGTAAACAAGCATCACTTGCTTA i cebCap1.NW_016107454v1 C 0 I 14 s aotNan1.NW_018507213v1 1889057 87 - 1938448 GCTCCCCCAATTGCCTTTCTTCCCAGCATCTTTTACCATATTTACAGTAG--TGCATCCTCAAAAAGGTAAACAAGCATCACTTGCTTA i aotNan1.NW_018507213v1 C 0 I 14 s mm10.chr12 91397504 82 - 120129022 GCCCCCAGACCTACTATTCGGCTCGGTGTCTTTCACTACAC-TACTGA----TGTGTTCTCAGAAAGGTCAGTGA--CTCACGTGCTGA i mm10.chr12 C 0 I 14 s canFam3.chr17 2010407 87 + 64289059 gccacccaggctacccCTC--CTTGGTACCTTTTATCCTATTTACAGAAGTATGTGTCCTCAGAAAAGTAACTAAGAATCACTTGTTTA i canFam3.chr17 I 216 I 250 s dasNov3.JH580157 511796 80 + 2232271 -----CAGAATTGTCTTT-TTCTCAGCAATCtttatcatatactcagaagaatgtggcctcaaaaaggt---taagaatcactTGCTTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2612065 176 - 159902609 I e proCoq1.NW_012151163v1 923234 223 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=38173.000000 s hg38.chr2_KI270769v1_alt 14532 7 + 120616 ---CCTTCAC----------- s panTro5.chr2A 3451862 7 + 111504155 ---CCTTCAC----------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338634 7 + 114371477 ---TCTTCAC----------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212242 7 + 637652 ---CCTTCAC----------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011666 7 + 81552678 ---CCTTCAC----------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270750 7 + 108979918 ---TTTTCAG----------- i rheMac8.chr13 I 14 C 0 s macFas5.chr13 4983839 7 - 111193037 ---TTTTCAG----------- i macFas5.chr13 I 14 C 0 s macNem1.NW_012011978v1 3378304 7 + 3644372 ---TTTTCAG----------- i macNem1.NW_012011978v1 I 14 C 0 s cerAty1.NW_012000820v1 3331592 7 - 10304083 ---TTTTCAG----------- i cerAty1.NW_012000820v1 I 14 C 0 s chlSab2.chr14 3415421 7 - 107702431 ---TTTTCAG----------- i chlSab2.chr14 I 14 C 0 s manLeu1.NW_012104432v1 958671 7 + 1565135 ---TTTTCAG----------- i manLeu1.NW_012104432v1 I 14 C 0 s colAng1.NW_012118821v1 3321854 7 - 13651311 ---TCTTCAC----------- i colAng1.NW_012118821v1 I 14 C 0 s calJac3.chr14 3406188 7 - 108792865 ---TTTTCCC----------- i calJac3.chr14 I 14 C 0 s saiBol1.JH378218 3069631 7 - 7082604 ---TTTTCAC----------- i saiBol1.JH378218 I 14 C 0 s cebCap1.NW_016107454v1 555536 7 + 5243153 ---TTTTCAC----------- i cebCap1.NW_016107454v1 I 14 C 0 s aotNan1.NW_018507213v1 1889158 7 - 1938448 ---TTTTCAC----------- i aotNan1.NW_018507213v1 I 14 C 0 s dasNov3.JH580157 511876 21 + 2232271 AATGGTTCACAGATGTTTTAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2612065 176 - 159902609 I e mm10.chr12 91397586 14 - 120129022 I e canFam3.chr17 2010494 250 + 64289059 I e proCoq1.NW_012151163v1 923234 223 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=264296.000000 s hg38.chr2_KI270769v1_alt 14539 23 + 120616 --ACATCACACC--AAGTTTAAATGTG s panTro5.chr2A 3451869 23 + 111504155 --ACATCACACC--AAGTTGAAATGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338641 23 + 114371477 --ACATCACACC--AAGTTGAAATGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212249 23 + 637652 --ACATCACACC--AAGTTTAAATGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011673 23 + 81552678 --ACATCACACC--AAGTTTAAATTTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270757 23 + 108979918 --ACATCACACT--AAGTTTAAATGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983846 23 - 111193037 --ACATCACACT--AAGTTTAAATGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378311 23 + 3644372 --ACATCACACT--AAGTTTAAATGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331599 23 - 10304083 --ACATCACACT--AAGTTTAAATGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415428 23 - 107702431 --ACATCACACT--AAGTTTAAATGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958678 23 + 1565135 --ACATCACACT--AAGTTTAAATGTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321861 23 - 13651311 --ACATCACACT--AAGTTTAAATGTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406195 23 - 108792865 --ACATCACACT--AAGTTTAAATATG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069638 23 - 7082604 --ACATCACACT--AAGTTTAAATATG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 555543 23 + 5243153 --ACATCACACT--AAGTTTAAATATG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889165 23 - 1938448 --ACATCACACT--AAGTTTAAATATG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2612241 23 - 159902609 --ACATAACACG--AAGTTTAATTTTC i micMur3.chr8 I 176 C 0 s mm10.chr12 91397600 23 - 120129022 --AGAACAGTTA--GGGTTTAATTTTC i mm10.chr12 I 14 C 0 s dasNov3.JH580157 511897 27 + 2232271 ACACAACACAATTAAAGTTTAATTTTT i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2010494 250 + 64289059 I e proCoq1.NW_012151163v1 923234 223 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=266106.000000 s hg38.chr2_KI270769v1_alt 14562 25 + 120616 AGTCAATGTCAGTCGAATGCTTCTT-------------- s panTro5.chr2A 3451892 25 + 111504155 AGTCAATGTCAGTCGAATGCTTCTT-------------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338664 25 + 114371477 AGTCAATGTCAGTCGAATGCTTCTT-------------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212272 25 + 637652 AGTCAATGTCAGTCGAATGCTTCTT-------------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011696 25 + 81552678 AGTCAGTGCCAGTCGAATGCTTCTT-------------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270780 25 + 108979918 AGTAAACGTCAGTCAAATGCTTCAT-------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983869 25 - 111193037 AGTAAACGTCAGTCAAATGCTTCAT-------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378334 25 + 3644372 AGTAAACGTCAGTCAAATGCTTCAT-------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331622 25 - 10304083 AGTAAACGTCAGTCAAATGCTTCAT-------------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415451 25 - 107702431 AGTAAACGTCAGTCAAATGCTTCAT-------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958701 25 + 1565135 AGTAAACGTCAGTCAAATGCTTCAT-------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321884 25 - 13651311 AGTAAACGTCAGTCAAATGCTTCAT-------------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406218 21 - 108792865 AGTAAATGTCAGTCGAATGCT------------------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069661 21 - 7082604 AGTAAATGTCAGTCGAATGCT------------------ i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 555566 21 + 5243153 AGTAAATGTCAGTCGAATGCT------------------ i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889188 21 - 1938448 AGTAAATGTCAGTCGGATGCT------------------ i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2612264 25 - 159902609 AGTTAATGTCAATCAAACTCTTCAT-------------- i micMur3.chr8 C 0 C 0 s mm10.chr12 91397623 25 - 120129022 AGTAAATGTCAATCTACTGTCCCAT-------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2010744 25 + 64289059 AGTAAATGTGAATCAAATGTTTCAT-------------- i canFam3.chr17 I 250 C 0 s dasNov3.JH580157 511924 39 + 2232271 AGTAAACTTTCATCAAATGCTTCCTAAACAAAAATTCAT i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 923234 223 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=442447.000000 s hg38.chr2_KI270769v1_alt 14587 34 + 120616 TGAGTTTCTTTTACCAAAGTGATTCTGTAATTAT s panTro5.chr2A 3451917 34 + 111504155 TGAGTTTCTTTTACCAAAGTGATTCTGTAATTAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338689 34 + 114371477 TGAGTTTCTTTTACCAAAGTGATTCTGTAATTAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212297 34 + 637652 TGAGTTTCTTTTAGCAAAGTGATTCTGTAATTAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011721 34 + 81552678 TGAGTTTCTTTTACCGAAGTGATTCTGTCATTAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270805 34 + 108979918 TGAGTTTCTTTTACCAAAGTGATTCTGTAATTAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983894 34 - 111193037 TGAGTTTCTTTTACCAAAGTGATTCTGTAATTAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378359 34 + 3644372 TGAGTTTCTTTTACCAAAGTGATTCTGTAATTAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331647 34 - 10304083 TGAGTTTCTTTTACCAAAGTGATTCTGTAATTAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415476 34 - 107702431 TGAGTTTCTTTTACCAAAGTGATTCTGTAATTAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958726 34 + 1565135 TGAGTTTCCTTTACCAAAGTGATTCTGTAATTAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321909 34 - 13651311 TGAGTTTCTTTGACCGAAGTGATTCTGTAATTAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406239 22 - 108792865 ------------ACCGAAGTGATTCTGTAATTAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069682 22 - 7082604 ------------ACCGAAGTGATTCTGTAATTAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 555587 22 + 5243153 ------------ACCGAAGTGCTTCTGTAATTAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889209 22 - 1938448 ------------ACCGAAGTGATTCTGTAATTAT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2612289 34 - 159902609 TGAGTTTCTTTTACTGAAGTGATTCTATAATTAT i micMur3.chr8 C 0 I 250 s proCoq1.NW_012151163v1 923457 34 + 1238772 TGAGTTTCTTTTAGTGAAGTGATTCTACAGTTAT i proCoq1.NW_012151163v1 I 223 C 0 s mm10.chr12 91397648 32 - 120129022 --TGGTTCTCTTACTGAAGTGACTCTGAGGTTAC i mm10.chr12 C 0 C 0 s canFam3.chr17 2010769 34 + 64289059 TGGGTTTCTTTTACTGAAGTGATCCTGGAATTAT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 511963 34 + 2232271 TGAGTTTCCATTACGGACAAGATTCTAGAATTGT i dasNov3.JH580157 C 0 C 0 e otoGar3.GL873658 2495030 301 + 5252280 I a score=472374.000000 s hg38.chr2_KI270769v1_alt 14621 43 + 120616 TTCTATGATTAGAAAGCTTT-------------------------------------------------------------------------------------------------------------GGAGA------------GGAGAGAGATGG--AGATAC s panTro5.chr2A 3451951 43 + 111504155 TTCTATGATTAGAAAGCTTT-------------------------------------------------------------------------------------------------------------GGAGA------------GGAGAGAGATGG--AGATAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338723 43 + 114371477 TTCTATGATTAGAAAGCTTT-------------------------------------------------------------------------------------------------------------GGAGA------------GGAGAGAGATGG--AGATAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212331 43 + 637652 TTCTATGATTAGAAAGCTTT-------------------------------------------------------------------------------------------------------------GGAGA------------GGAGAGAGATGG--AGATAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011755 43 + 81552678 TTCTATGATTGGAAAGCTTT-------------------------------------------------------------------------------------------------------------GGAGA------------GGAGAGAGATGG--AGATAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270839 43 + 108979918 TTCTATGATTGGAAAGCTTT-------------------------------------------------------------------------------------------------------------GGAAA------------GGAGGGAGATGG--AGATAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983928 43 - 111193037 TTCTATGATTGGAAAGCTTT-------------------------------------------------------------------------------------------------------------GGAAA------------GGAGGGAGATGG--AGATAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378393 43 + 3644372 TTCTATGATTGGAAAGCTTT-------------------------------------------------------------------------------------------------------------GGAAA------------GGAGGGAGATGG--AGATAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331681 43 - 10304083 TTCTATGATTGGAAAGCTCT-------------------------------------------------------------------------------------------------------------GGAAA------------GGAGGGAGATGG--AGACAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415510 43 - 107702431 TTCTATGATTGGAAAGCTTT-------------------------------------------------------------------------------------------------------------GGAAA------------GGAGGGAGATGG--AGATAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958760 43 + 1565135 TTCTATGATTGGAAAGCTTT-------------------------------------------------------------------------------------------------------------GGAAA------------GGAGGGAGATGG--AGACAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321943 43 - 13651311 TTCTATCATTGGAAAGCTTT-------------------------------------------------------------------------------------------------------------GGAAA------------GGAGGGAGATGG--AGATAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406261 38 - 108792865 TTCTATGATTGGAAAGCTTT------------------------------------------------------------------------------------------------------------------------------GGAGAGAGATGG--AGATAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069704 38 - 7082604 TTCTATGATTGGAAAACTTT------------------------------------------------------------------------------------------------------------------------------GAAGACAGATGG--AGATAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 555609 38 + 5243153 TTCTATGATTGGAAAGCTTT------------------------------------------------------------------------------------------------------------------------------GGAGAGAGATGG--AGATAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889231 38 - 1938448 TTCTATGATTGGAAAGCTTT------------------------------------------------------------------------------------------------------------------------------GGAGAGAGATGG--AGATAC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 923491 43 + 1238772 TGCTATGATTGGAAAGTTTT-------------------------------------------------------------------------------------------------------------GGAAA------------GGAAAGATATGG--AGGTAC i proCoq1.NW_012151163v1 C 0 C 0 s mm10.chr12 91397680 165 - 120129022 TCCTGTGATT-GAAAGCTTTCTGTAGCTctgcgtgtcgtcggcagcttcctgtgatcccagcagtctcgggctgaggtgagaggattatgagtttgagaccagtctgcagtatgcagcaagatttttaagaaaataagactttgttggacaaaaaaggcaagatac i mm10.chr12 C 0 C 0 s canFam3.chr17 2010803 43 + 64289059 TGCTATAACTAAGGAGCTTT-------------------------------------------------------------------------------------------------------------GGGAA------------GGAAAGAGATAG--AGATAG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 511997 43 + 2232271 TCCTGTGATTGACAAGATTT-------------------------------------------------------------------------------------------------------------GGAAA------------AGAGAGATATGG--GGATAC i dasNov3.JH580157 C 0 I 845 e micMur3.chr8 2612323 250 - 159902609 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=8191.000000 s hg38.chr2_KI270769v1_alt 14664 3 + 120616 -TC-T s panTro5.chr2A 3451994 3 + 111504155 -TC-T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338766 3 + 114371477 -TC-T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212374 3 + 637652 -TC-T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011798 3 + 81552678 -TC-T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270882 3 + 108979918 -TC-T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983971 3 - 111193037 -TC-T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378436 3 + 3644372 -TC-T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331724 3 - 10304083 -TC-T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415553 3 - 107702431 -TC-T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958803 3 + 1565135 -TC-T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321986 3 - 13651311 -TC-T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406299 4 - 108792865 -TCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069742 4 - 7082604 -TCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 555647 5 + 5243153 TTTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889269 4 - 1938448 -TCTT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 923534 3 + 1238772 -TC-C i proCoq1.NW_012151163v1 C 0 C 0 s mm10.chr12 91397845 3 - 120129022 -tg-g i mm10.chr12 C 0 C 0 s canFam3.chr17 2010846 3 + 64289059 -CC-T i canFam3.chr17 C 0 I 800 e micMur3.chr8 2612323 250 - 159902609 I e dasNov3.JH580157 512040 845 + 2232271 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=41769.000000 s hg38.chr2_KI270769v1_alt 14667 3 + 120616 TTT s panTro5.chr2A 3451997 3 + 111504155 TTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338769 3 + 114371477 TTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212377 3 + 637652 TTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011801 3 + 81552678 TTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270885 3 + 108979918 TTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983974 3 - 111193037 TTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378439 3 + 3644372 TTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331727 3 - 10304083 TTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415556 3 - 107702431 TTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958806 3 + 1565135 TTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321989 3 - 13651311 TTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406303 3 - 108792865 TTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069746 3 - 7082604 TTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 555652 3 + 5243153 TTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889273 3 - 1938448 TTT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 923537 3 + 1238772 TTT i proCoq1.NW_012151163v1 C 0 I 461 s mm10.chr12 91397848 3 - 120129022 ttt i mm10.chr12 C 0 C 0 e micMur3.chr8 2612323 250 - 159902609 I e canFam3.chr17 2010849 800 + 64289059 I e dasNov3.JH580157 512040 845 + 2232271 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=26376.000000 s hg38.chr2_KI270769v1_alt 14670 3 + 120616 -TTA s panTro5.chr2A 3452000 3 + 111504155 -TTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338772 3 + 114371477 -TTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212380 3 + 637652 -TTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011804 3 + 81552678 -TTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270888 3 + 108979918 -TTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983977 3 - 111193037 -TTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378442 3 + 3644372 -TTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331730 3 - 10304083 -TTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415559 3 - 107702431 -TTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958809 3 + 1565135 -TTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321992 3 - 13651311 -TTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406306 3 - 108792865 -TTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069749 3 - 7082604 -TTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 555655 3 + 5243153 -TTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889276 3 - 1938448 -TTA i aotNan1.NW_018507213v1 C 0 C 0 s mm10.chr12 91397851 4 - 120129022 taaa i mm10.chr12 C 0 C 0 e micMur3.chr8 2612323 250 - 159902609 I e canFam3.chr17 2010849 800 + 64289059 I e proCoq1.NW_012151163v1 923540 461 + 1238772 I e dasNov3.JH580157 512040 845 + 2232271 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=1523102.000000 s hg38.chr2_KI270769v1_alt 14673 154 + 120616 AA-GGGGAAAAAACAGCTAATTTGT---AAGTATCTGTATCCTTTATAATTTGCTAATGCAGTTACGGATCTCCAGGGTGGCCATTTCCCTGG--CCC----------------ATGCTCTGTTCCCAAGGGTGTGGGCGTGG-CCCCT-TGGTTTGGCCATGGGGAAGCTGCTGTGA s panTro5.chr2A 3452003 154 + 111504155 AA-GGGGAAGAAACAGCTAATTTGT---AAGTATCTGTATCCTTTATAATTTGCTAATGCAGTTACGGATCTCCAGGGTGGCCGTTTCCCTGG--CCC----------------ATGCTCTGTTCCCAAGGGTGTGGGCGTGG-CCCCT-TGGTTTGGCCTTGGGGAAGCTGCTGTGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338775 154 + 114371477 AA-GGGGAAGAAACAGCTAATTTGT---AAGTATCTGTATCCTTTATAATTTGCTAATGCAGTTACGGATCTCCAGGGTGGCCGTTTCCCTGG--CCC----------------ATGCTCTGTTCCCAAGGGTGTGGGCGTGG-CCCCT-TGGTTTGGCCTTGGGGAAGCTGCTGTGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212383 154 + 637652 AA-GGGGAAAAAACAGCTAATTTGT---AAGTATCTGTATCCTTTATAATTTGCTAATGCAGTTACAGATCTCCAGGATGGCCGTTTCGCTGG--TCC----------------ATGCTCTGTTCCCAAGGGTGTGGGCGTGG-CCCCT-TGGTTTGGCCGTGGGGAAGCTGCTGTGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011807 154 + 81552678 AA-AGGGAAAAAACAGCAAATTTCT---AAGTATCTGTATCCATTGTAATTTGCTAATGCAGTTACGGATCTCCAGGGTGGCCGTTTCCCTGG--CCC----------------ATGCTCTGTTCGTGAGGGTGTGGACGTGG-CCCCT-TGGTTTGGCGGTAGAGAAGCTGCTGTGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3270891 154 + 108979918 AA-GGGGAAAAAACAGCTAATTTCT---AAGTATCTGTATCCTCTATAATTTGCTAATGCAGTTATGGATCTCCAGGGTGGCCGTTTCCCTGG--CGC----------------ATGCTCTGTTCCCGAGGGTGTGGGCGTGG-CCCCT-CGGTTTGGCCGTGGAGAAGCTGCTGTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4983980 154 - 111193037 AA-GGGGAAAAAACAGCTAATTTCT---AAGTATCTGTATCCTCTATAATTTGCTAATGCAGTTATGGATCTCCAGGGTGGCCGTTTCCCTGG--CGC----------------ATGCTCTGTTCCCGAGGGTGTGGGCGTGG-CCCCT-CGGTTTGGCCGTGGAGAAGCTGCTGTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378445 154 + 3644372 AA-GGGGAAAAAACAGCTAATTTCT---AAGTTTCTGTATCCTCTATAATTTGCTAATGCAGTTACGGATCTCCAGGGTGGCCGTTTCCCTGG--CGC----------------ATGCTCTGTTCCCGAGGGTGTGGGCGTGG-CCCCT-CGGTTTGGCCGTGGAGAAGCTGCTGTGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331733 154 - 10304083 AA-GGGGAAAAAACAGCTAATTTCT---AAGTATCTGTATCCTCTATAATTTGCTAATGCAGTTACGGATCTCCAGGGTGGCCGTTTCCCTGG--CGC----------------ATGCTCTGTTCCCGAGGGTGTGGGCGTGG-CCCCT-CGGTTTGGCCGTGGAGAAGCTGCTGTGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415562 154 - 107702431 AA-GGGGAAAAAACAGCTAATTTCT---AAGTATCTGTATCCTCTATAATTTGCTAGTGCCGTTACGGATCTCCAGGGTAGCCATTTCCCTGG--CGC----------------ATGCTCTGTTCCCGAGGGTGTGGGCGTGG-CCCCT-CGATTTGGCCGTGGAGAAGCTGCTGTGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958812 154 + 1565135 AA-GGGGAAAAAACAGCTAATTTCT---AAGTATCTGTATCCTCTATAATTTGCTAATGCAGTTACGGATCTCCAGGGTGGCCGTTTCCCTGG--CGC----------------ATGCTCTGTTCCCGAGGGTGTGGGCGTGG-CCCCT-CGGTTTGGCCGTGGAGAAGCTGCTGTGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3321995 155 - 13651311 AAGGGGGAAAAAACAGCTAATTTCT---AAGTATCTGTATCCTCTATAATTTGCTAATGCAGTTACGGATCTCCAGGGTGGCCGTTTCCCCGG--CCC----------------ATGCTCTGTTCCcgagggtgtgggcgtgg-cccct-gggtgtggccgtggAGAAGCTGCTGTGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406309 155 - 108792865 AA-AGGGGAAAAACAGCTAATTTGT---AAATGTCTGTATACTTTATAATTTGCTAATGCAGTTACAGATCTCCAGGTTAGCTGTTTCCCCAG--CCC----------------ATGCTCTGTTCCCGAGGGTGTGGGTGTGGCCCCCT-CGATTTGGCCTGGGAAAAGCTGCTGTGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069752 154 - 7082604 AA-GGGGGGAAAACAGCTAATTTGT---AAATGTCTGTGTACTTTATAATTTGCTAATGCAGTTATACATCTCCAGGGTAGCTGTTTCCCCAG--CCC----------------ATGCTCTATTCCCGAGGGTGTGGGTGTGG-CCCCT-CGAATTGGCCACGGAAAAGCTGCTGTGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 555658 155 + 5243153 AA-GGGGGAAGAACAGCTAATTTGT---AAATGTCTGTATACTTTATAATTTGCTAATGCAGTTACAGATCTCCAGGGTAGCTGTTTCCCCAG--CTC----------------ATGCTCTATTCCTGAGGGTGTGGGTGTGGCCTCCT-TGATTTGGCCGTGGAAAAGCTGCTGTGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889279 154 - 1938448 AA-GGGGG-AAAATAGCTAATTTGT---AAATGTCTGTATACTTTATAATTTGCTAATGCAGTTATAGATCTCCAGGGTAGCTGTTTCCCCAG--CCC----------------ATGCTCTATTCCCGAGGGTGTGGGTGTGGCCCCCT-CGATTTGGCCGCGGAAAAGCTGCTGTGA i aotNan1.NW_018507213v1 C 0 C 0 s mm10.chr12 91397855 129 - 120129022 aa-aaAGCAAGGACAGCTGCTT--T---AAGTGACTGC-TCTTCTGT-CCTTGCTAGTGAGATTGTA---------GGTGACCATCTCTGCAGCCCCC----------------GTGAGCTGGTC---AGCAAGCAGGCCT---TTCCA-TGGT---------AAGGGGTGGCTGTTC i mm10.chr12 C 0 I 11 s dasNov3.JH580157 512885 171 + 2232271 aa-gtaaaaaataaaataaatttttttaaaaaatcaGTATACATTTTAATTTACTAATAAAGTTATAGGTCT---AAATAGATGACCACCTGA--AACTAATAAAATGAATAGTATATCCCATTTTTGAAAGAATTGTTGCCG-TTCCTATTATTTGGCCTTGAGAAAACTGCTATAA i dasNov3.JH580157 I 845 C 0 e micMur3.chr8 2612323 250 - 159902609 I e canFam3.chr17 2010849 800 + 64289059 I e proCoq1.NW_012151163v1 923540 461 + 1238772 I e otoGar3.GL873658 2495030 301 + 5252280 I a score=358279.000000 s hg38.chr2_KI270769v1_alt 14827 43 + 120616 TGTATCCTCTTGAGGCAGGAACTGAACTGGCAGCATGACAGGG s panTro5.chr2A 3452157 43 + 111504155 TGTATCGTCTTGAGGCAGGAACTGAACTGGCAGCATGACAGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338929 43 + 114371477 TGTATCGTCTTGAGGCAGGAACTGAACTGGCAGCATGACAGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212537 43 + 637652 TGTATCCTCTTGAGGCAGGAACTGAACTGGCAGCATGACAGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3011961 43 + 81552678 TGTATCCTCTTGAGGCAGGAATTGAACTGGCAGCATGACAGGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271045 43 + 108979918 TGTGTCCTCTTGAGGCAGGGACTGAACTGGCAGCACGACGGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984134 43 - 111193037 TGTGTCCTCTTGAGGCAGGGACTGAACTGGCAGCACGACGGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378599 43 + 3644372 TGTGTCCTCTTGAGGCAGGGACTGAACTGGCAGCACGACGGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331887 43 - 10304083 TGTGTCCTCTTGAGGCAGGGACTGAACTGGCAGCACGACGGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415716 43 - 107702431 TGTGTCCTCTTGAAGCAGGGACTGAACTGGCAGCATGACGGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 958966 43 + 1565135 TGTGTCCTCTTGAGGCAGGGACTGAACTGGCAGTATGACGGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3322150 43 - 13651311 TGTATCCTCTTGAGGCTGGGACTGAACTGGCAGCATGACGGGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406464 42 - 108792865 TGTGTCATCCTGAGGCAGCGGCTGGACTGGCAGCCTGG-TGTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069906 43 - 7082604 TGCGCCATCCTGAGGCAGCGGCTGGACTGGCAGCCTGGCTGTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 555813 43 + 5243153 TGCGTCATCCTGAAGCAGCGGCTGGACTGGCAGCCTGGCTGTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889433 43 - 1938448 TGCGTCATCCTGAGGCAGCGGCTGGACTGGCAGCCTGGCTGTG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2495331 43 + 5252280 TGCAGCGTCACGAGTAACAGGCTGTATGTGAAGTATGGCTGTA i otoGar3.GL873658 I 301 C 0 s mm10.chr12 91397995 38 - 120129022 TTTGGACTTTAAAAAGAAAACCAAAAAAGCAAGCCTGA----- i mm10.chr12 I 11 C 0 s dasNov3.JH580157 513056 39 + 2232271 TAAACAATTATAAATAGTAGGCTGTATTAGAAGTATGAC---- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2612323 250 - 159902609 I e canFam3.chr17 2010849 800 + 64289059 I e proCoq1.NW_012151163v1 923540 461 + 1238772 I a score=90066.000000 s hg38.chr2_KI270769v1_alt 14870 6 + 120616 CTTTAT s panTro5.chr2A 3452200 6 + 111504155 CTTTAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338972 6 + 114371477 CTTTAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212580 6 + 637652 CTTTAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012004 6 + 81552678 CTTTAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271088 6 + 108979918 CTTTAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984177 6 - 111193037 CTTTAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378642 6 + 3644372 CTTTAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331930 6 - 10304083 CTTTAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415759 6 - 107702431 CTTTAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 959009 6 + 1565135 CTTTAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3322193 6 - 13651311 CTTTAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406506 6 - 108792865 CTTTAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3069949 6 - 7082604 Ctttat i saiBol1.JH378218 C 0 I 163 s cebCap1.NW_016107454v1 555856 6 + 5243153 CTTTAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889476 6 - 1938448 CTTTAT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2495374 6 + 5252280 CTTTAC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398033 6 - 120129022 CTTGAT i mm10.chr12 C 0 C 0 s canFam3.chr17 2011649 6 + 64289059 cccTAT i canFam3.chr17 I 800 C 0 s dasNov3.JH580157 513095 5 + 2232271 -TTTAT i dasNov3.JH580157 C 0 I 2 e micMur3.chr8 2612323 250 - 159902609 I e proCoq1.NW_012151163v1 923540 461 + 1238772 I a score=166807.000000 s hg38.chr2_KI270769v1_alt 14876 17 + 120616 AATAATGGG-----------------------TTTAAAAA s panTro5.chr2A 3452206 17 + 111504155 AATAATGGG-----------------------TTTAAAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338978 17 + 114371477 AATAATGGG-----------------------TTTAAAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212586 17 + 637652 AATAATGGG-----------------------TTTAAAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012010 17 + 81552678 AATAATGGG-----------------------TATAAAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271094 17 + 108979918 AATAATGGG-----------------------TTTAAAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984183 17 - 111193037 AATAATGGG-----------------------TTTAAAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378648 17 + 3644372 AATAATGGG-----------------------TTTAAAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331936 17 - 10304083 AATAATGGG-----------------------TTTAAAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415765 17 - 107702431 AATAATGGG-----------------------TTTAAAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 959015 17 + 1565135 AATAATGGG-----------------------TTTAAAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3322199 16 - 13651311 -ATAGTGGG-----------------------TTTAAAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406512 17 - 108792865 AATCATGGG-----------------------TTTAAACA i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 555862 17 + 5243153 AATCATGGG-----------------------CTTAAACA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889482 17 - 1938448 AATCATGGG-----------------------TTTAAACG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2495380 17 + 5252280 AGTGATGAG-----------------------TTTAAAAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398039 35 - 120129022 ---GATGGACAGGCTTCATTTCCCAGTTCATCTCTAAA-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2011655 17 + 64289059 AATGACCAG-----------------------TTAAAAAG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 513102 17 + 2232271 AATGATAAG-----------------------TTTAAAAA i dasNov3.JH580157 I 2 C 0 e micMur3.chr8 2612323 250 - 159902609 I e saiBol1.JH378218 3069955 163 - 7082604 I e proCoq1.NW_012151163v1 923540 461 + 1238772 I a score=1341488.000000 s hg38.chr2_KI270769v1_alt 14893 123 + 120616 TCACACACA-AAGCCATGCATGTTAATTATAA-TTAATTTTTTCTACAGGCTAT-TTTTTA--CCCTCTTTGATCGTTCCTGTTATTAATAAATATATACAATGGTTTGATG-TGTTT--CATACGTTGGA s panTro5.chr2A 3452223 123 + 111504155 TCACACACA-AAGCCATGCATGTTAATTATAA-TTAATTTTTTCTACAGGCTAT-TTTTTA--TCCTCTTTGATCGTTCCTGTTATTAATAAATATATACAATGGTTTGATG-TGTTT--CATACGTTGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3338995 123 + 114371477 TCACACACA-AAGCCATGCATGTTAATTATAA-TTAATTTTTTCTACAGGCTAT-TTTTTA--TCCTCTTTGATCGTTCCTGTTATTAATAAATATATACAATGGTTTGATG-TGTTT--CATACGTTGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212603 123 + 637652 TCACACACA-AAGCCATGCATGTTAATTATAA-TTAATTTTTTCTACAGGCTAT-TTTTTA--CCCTCTTTGATCGTTCCTGTTATTAATAAATATATACAATGGTTTGATG-TGTTT--CATACGTTGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012027 123 + 81552678 TCACACACA-AAGCCATGCATGTTAATTATAA-TTAATTTTTTCTACAGGCTAT-TTTTTA--CCCTCTTTGATTGTTCCTGTTATTAATAAATATATACAATGGTTTGATG-TGTTT--CATACATTGGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271111 121 + 108979918 T--CACACA-AAGCCATGGATGTTCATTGAGA-TGGATTTTTTCTACAGGCTAT-TTTTTA--CCCTCTTTGACTGTTCCTGTTATTAATAAATATATACAGTGGTTTGATG-TGTGT--CATACATTGGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984200 121 - 111193037 T--CACACA-AAGCCATGGATGTTCATTGAGA-TGGATTTTTTCTACAGGCTAT-TTTTTA--CCCTCTTTGATTGTTCCTGTTATTAATAAATATATACAGTGGTTTGATG-TGTGT--CATACATTGGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378665 121 + 3644372 T--CACACA-AAGCCATGGATGTTCATTGAGA-TGGATTTTTTCTACAGGCTAT-TTTTTA--CCCTCTTTGATTGTTCCTGTTATTAATAAATATATACAGTGGTTTGATG-TGTGT--CATACATTGGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3331953 121 - 10304083 T--CACACA-AAGCCATGGATGTTCATTGAGA-TGGATTTTTTCTACAGGCTAT-TTTTTA--CCCTCTTGGATTGTTCCTGTTATTAATAAATATATACAGTGGTTTGATG-TGTGT--CATACATTGGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415782 119 - 107702431 TCACACACA-AAGCCATGCATGTTCATTGTGA-TGTATTTTTTCTACAGGCTAT-TTTTTA--CCCTCTTTGATTGTTCCTGTTATT----AATATATACAATGGTTTGATG-TGTGT--CATACATTGGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 959032 121 + 1565135 T--CACACA-AAGCCATGGATGTTCATTGAGA-TGCATTTTTTCTACAGGCTAT-TTTTTA--CCCTCTTTGATTGTTCCTGTTATTAATAAATATATACAGTGGTTTGATG-TGTGT--CATACATTGGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3322215 123 - 13651311 TCACACACA-AAGCCATGCATGTTCATTGTGA-TGGATTTTTTCTACAGGCTCT-TTTTTA--CCCTCTTTGATTGTTCCTGTTATTAATAAATATACATAATGGTTTGATG-TGTGT--CATACATTGGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406529 123 - 108792865 TCACACAGA-GAGCCATGCATGTTAGTCGTAG-TTAATTTTTTCTGCAGGCTAC-TTTTTA--CCCTCTTTGATTCTTCCTGTTATTAATAAATATATACCCTGGTTTGATG-TCTTC--CTTACGTTGGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070118 119 - 7082604 TCACACACA-AAGCCATGCATGTTAATCATAG-----TTTTTTCTGCAGGCTAC-TTTTTA--CCCTCTTTGATTCTTCCTGTTATTAATAAATATATACACTGGTTTGATG-TCTTC--CTCACATTGGA i saiBol1.JH378218 I 163 C 0 s cebCap1.NW_016107454v1 555879 123 + 5243153 CCACACACA-AAGCCATGCATGTTAATCGTAG-TTAATTTTTTCTGCAGGCTAC-TTTTTA--CCCTCTTTGATTCTTCCTGTTTTTAATAAATAGATACACTGGTTTGATG-TCTTC--CTTGCATTGGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889499 123 - 1938448 TCACACACA-AAGCCATGCATGTTAATCGTAG-TTAATTTTTTCTGCAGGCTAC-TTTTTA--CCCTCTTTGATTCTTCCTGTTATTAATAAATGTATACACTGGTTTGATG-TCTTC--CTTACATTGGA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2495397 111 + 5252280 --TCACAC-----CCATGCGTTTCAGTTGTAA-TTAATCTGTTCTGTAGGCTGTGTTTTTA--CCTTCTTTGATTGTTCCTAATATTAATAAATATA-------GTTTGATT-ATTTT--CATACACTAAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398074 109 - 120129022 --GTACACACGGGCCCTG--TACTGATTATAA-TCCA-----TCTGCCTGGTGTGTTTCTA--CCATCTGTAGTTATTCCTTATATTAATACAT---------GCTTTTATC-TTTCTCCCATACACTGAA i mm10.chr12 C 0 C 0 s canFam3.chr17 2011672 123 + 64289059 ---TACACA-GAGCCACATACATTCATGGTAACTGAATTGTTCCCACAGGCGATCCTTTTA--CCTTCTTTAATTGTTCATAGTGTTAATAAATATAGAAAGGGGCTTGGGGCTTTTT--TTCATATTGAA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 513119 125 + 2232271 --CAACACA-AAGCCATACACAATAATTGTAA-TTGATTTGTTCTACAGGTTAA-CTTTTGACCCTTCTTTGTTTAATCCTAGTATTAATAAATATATGCAATGGTTTGATT-TCTTTTTCATGCATTAAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2612323 250 - 159902609 I e proCoq1.NW_012151163v1 923540 461 + 1238772 I a score=294852.000000 s hg38.chr2_KI270769v1_alt 15016 19 + 120616 AATACTTGAGACCATCAGA s panTro5.chr2A 3452346 19 + 111504155 AATACTTGAGACCATCAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339118 19 + 114371477 AATACTTGAGACCATCAGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212726 19 + 637652 AATACTTGAGACCATCAGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012150 19 + 81552678 AATACTTGAGACCATCAGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271232 19 + 108979918 AATACTTGAGACCATCAGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984321 19 - 111193037 AATACTTGAGACCATCAGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378786 19 + 3644372 AATACTTGAGACCATCAGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332074 19 - 10304083 AATACTTGAGACCATCAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415901 19 - 107702431 AATACTTGAGACCATTAGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 959153 19 + 1565135 AATACTTGAGACCATCAGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3322338 19 - 13651311 AATACTTGAGACCATCAGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406652 19 - 108792865 AATGCTTGAGCCCAGAAGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070237 19 - 7082604 AATACTTGAGCCCATCAGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556002 19 + 5243153 AATACTTGAGCCCATCAGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889622 19 - 1938448 AATACTTGAGCCCATCAGA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 924001 19 + 1238772 AATACTTGAGGCCATTAGA i proCoq1.NW_012151163v1 I 461 C 0 s otoGar3.GL873658 2495508 19 + 5252280 AATACTTGAGGCCAGTAGA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398183 19 - 120129022 AATGCTCAAGGCCATTGGA i mm10.chr12 C 0 C 0 s canFam3.chr17 2011795 19 + 64289059 AATACATATCACCAGGAGA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 513244 19 + 2232271 ACTGCTTGAGACCATTAGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2612323 250 - 159902609 I a score=1770288.000000 s hg38.chr2_KI270769v1_alt 15035 121 + 120616 AATTTTATTA-ACAGGCCTAACAAGGGAGCTTACGTAAGGTGAAAAATGTATTTATGAAAGGATCTTTACCT---TGCCCTGGTATTTTAATTCTAGTGTGTCCTAAAATAATTCGTGTTGTCTT s panTro5.chr2A 3452365 121 + 111504155 AATTTTATTA-ACAGGCCTAACAAGGGAGCTTACGTAAGGTGAAAAATGTATTTATGAAAGGATCTTTACCT---TGCCCTGGTATTTTAATTCTAGTGTGTCCTAAAATAATTGGTGTTGTCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339137 121 + 114371477 GATTTTATTA-ACAGGCCTAACAAGGGAGCTTACGTAAGGTGAAAAATGTATTTATGAAAGGATCTTTACCT---TGCCCTGGTATTTTAATTCTAGTGTGTCCTAAAATAATTGGTGTTGTCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212745 121 + 637652 AATTTTATTA-ACAGGCCTAACAAGGGAGCTTACGTAAGGTGAAAAATGTATTTATGAAAGGATCTTTACCT---TGCCCTGGTATTTTAATTCTAGTGTGTCCTAAAATAATTTGTGTTGTCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012169 121 + 81552678 AATTTTATTA-ACAGGCCTAACAAGGGAGCTTACGTAAGGTGAAAAATGTATTTATGAAAGGATCTTTACCT---TGTCCTGGTATTTTAATTCTAGTGTGTCCTAAAATAATTCCTGTTGTCTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271251 121 + 108979918 AATTTTATTA-ACAGGCCTAACAAGGGAGCTTACGTAAGGTGAAAAATGTATTCATGAAAGGATCTTTACCT---TGCCCTGGTATTTTCGTTCTAGTGTGTCCTAAAATAATTCCTGTTGTCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984340 121 - 111193037 AATTTTATTA-ACAGGCCTAACAAGGGAGCTTACGTAAGGTGAAAAATGTATTCATGAAAGGATCTTTACCT---TGCCCTGGTATTTTCGTTCTAGTGTGTCCTAAAATAATTCCTGTTGTCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378805 121 + 3644372 AATTTTATTA-ACAGGCCTAACAAGGGAGCTTATGTAAGGTGAAAAATGTATTCATGAAAGGATCTTTACCT---TGCCCTGGTATTTTCGTTCTAGTGTGTCCTAAAATAATTCCTGTTGTCTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332093 121 - 10304083 AATTTTATTA-ACAGGCCTAACAAGGGAGCTTACGTAAAGTGAAAAATGTATTCATGAAAGGATCTTTACCT---TGCCCTGGTATTTTCGTTCTAGTGTGTCCTAAAATAATTCCTGTTGTCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3415920 121 - 107702431 AATTTTTTTA-ACAGACCTAACAAGGGAGCTTACGTAAGGTGAAAAATGTATTAATGAAAGGATCTTTACCT---TGCCCTGGTATTTTCATTCTAGTGTGTCCTAAAATAATTCCTGTTGTCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 959172 121 + 1565135 AATTTTATTA-ACAGGCCTAACAAGGGAGCTTACGTAAGGTGAAAAATGTATTCATGAAAGGATCTTTACCT---TGCCCTGATATTTTCGTTCTAGTGTGTCCTAAAATAATTCCTGTTGTCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3322357 121 - 13651311 AATTTTATTA-AGAGGCCTAACAAGGGAGCTTACGTAAGGTGAAAAATGTATTAATGAAAGGATCTTTCCCT---TGCCCTGGTGTTTGCATTCTAGTGTGTCCTAAAATAATTCCTGTTGTCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406671 119 - 108792865 AGCTTTATTA-ACACACCTAAC--GGGAACTTACGAAAGGTGAGACATGTATTTATGAGAAGATCTTTACCT---TGCCCTGGTATTTTAATTCTAATATGCCCTAAAATAGTTCCTGTTGTCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070256 121 - 7082604 AACTTTATTA-ACAGGCCTAACAAGGAAGCTTACGTAAGGTGAAATATGTATTTATGAAAGGATCTTTAACT---TGCACTGGTATTTTAATTCTAATATGTCCTAAAATAATTCCTGTTGTCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556021 121 + 5243153 AACTTTATTA-ACAGGCCTAACAGGGGAGCTTACGTAAGGTGAAATATGTATTTATGAAAGGATCTTTACCT---CGCCCTGGTATTTTAATTCTAATATGTCCTAAAATAATTCGTGTTGTCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889641 112 - 1938448 AACTTTATTA-ACAGGCCTAACAAGGGAGCTTACGTAAGGTGAAATATGTATTTATGAAAGGATCTTTACAT---TGCCCTGGTATTT---------TCTGTCCTAAAATAATTCCTGTTGTCTT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2612573 121 - 159902609 AATTTTATTA-ATAGTCCTAACCAGGGAACGTATGTAAGGTAGGAAGTGTATTTATAAAAAGATCATTTCCT---TGCCCTGGTATTTTAATTACAGTATGTCCTAAAATAATTCCTACTGTCTT i micMur3.chr8 I 250 C 0 s proCoq1.NW_012151163v1 924020 121 + 1238772 GATTTTATTA-ACAGTCCTAACAAGGGAACTTAGGTAAGGTAGGAAATGTATTCATAACTAGATCATCACGT---TGCCCTGGTATTTTAATTACAGAGTGTCCTAAAATAATTCCTGTTGTCTT i proCoq1.NW_012151163v1 C 0 I 19 s otoGar3.GL873658 2495527 121 + 5252280 GATTTTATTA-ACAGTCCTAATAAGGGAACTAATTTAAAGTAGGAAATGCATTTATAAGAAGATCATTACCT---TGCCCTGGTATCTTAATTACAGTATATCTTAAAATCATTCCTATTGTCTT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398202 97 - 120129022 GATCCCACTGCAGGAACCTGACCAGGCATCCTCTTCAGGACGGG---TGTGTGTATAGAAAG--------------GCCATGGTGTTC-------ATTGCGGCCTAAGAT--TCCCTGCCATC-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2011814 117 + 64289059 GATTTTATTA---GAGCCCAACATGGAGACCTATTTAAGGTGGAAAATGTATTTATAAAAAAAGTTGTAAATACATGCCCTGGTGTTTTAAT-----TATGTCCTAAAATAATTCCTGTCCTCTT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 513263 116 + 2232271 GATTTTATTA-ATGATCCTCACAAAGGGACCTGTTTAAGGTAGGAAGTATACTTAGGAAAAGATCATTACCT---TACTCTGGAATTTTAAT-----TATATCCTGAAATAATTTCTATCATCTT i dasNov3.JH580157 C 0 C 0 a score=250445.000000 s hg38.chr2_KI270769v1_alt 15156 24 + 120616 TAAGGCAGCCAGGAAAGGGTT--------TTT s panTro5.chr2A 3452486 24 + 111504155 TAAGGCAGCCAGGAAAGGGTT--------TTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339258 24 + 114371477 TAAGGCAGCCAGGAAAGGGTT--------TTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212866 24 + 637652 TAAGGCAGCCAGGGAAGGGTT--------TTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012290 24 + 81552678 TAGGGCAGCCAGGAAAGGGTT--------TTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271372 24 + 108979918 TAAGGCAGCGAGGAAAGGGTT--------TCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984461 24 - 111193037 TAAGGCAGCGAGGAAAGGGTT--------TCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378926 24 + 3644372 TAAGGCAGCGAGGAAAGGGTT--------TCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332214 24 - 10304083 TAAGGCAGCCAGGAAAGGGTT--------TCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416041 24 - 107702431 TAAGGCAGCCAGGAAAGGGTT--------TCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 959293 24 + 1565135 TAAGGCAGCCAGGAAAGGGTT--------TTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3322478 24 - 13651311 TAAGGCAGCCAGGATAGGGTT--------TCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406790 32 - 108792865 CAAGGCAGCCAGGAAAGGATCTGAAAGGATCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070377 24 - 7082604 TAAGGCAGCCAGGAAAGGGTT--------TCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556142 24 + 5243153 TAAGGCAGCCAGGAAAGGGTT--------CCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889753 24 - 1938448 TAAGGCAGCCAGGAAAGGGTT--------TCT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2612694 20 - 159902609 -ATG---GCCAGGAAAGAGAT--------TCT i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2495648 21 + 5252280 TAAG---GCCAGGACAGAGAT--------TTA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398299 6 - 120129022 ----ACATCC---------------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2011931 21 + 64289059 TAAG---ATTAGGAAAGAGTC--------TTG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 513379 21 + 2232271 TGAG---ACTAGGAAAGAGTT--------ACT i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 924141 19 + 1238772 I a score=2816649.000000 s hg38.chr2_KI270769v1_alt 15180 195 + 120616 GAAT-TATTTCCCTAAGTTATGTCA-GAGTTTCCTAAGATTGTAATTTACAGGGAAATGGATGTCACAGCCT-G-GGAGAAGGACGTGTTAATCACTTTAATGGTATCATATGTAGAGGTAATAA-TTCCCTTTGAGTCTTAGATGGAGAAAAGTTATGTACATGCCATTAGTTACTTGAGTGA--TTTTTATT-AGACTATT s panTro5.chr2A 3452510 195 + 111504155 GAAT-TATTTTCCTAAGTTATGTCA-GAGTTTCCTAAGATTGTAATTTACAGGGAAATGGATGTCACAGCCT-G-GGAGAAGGACGTGTTAATCACTTTAATGGTATCATATGTAGAGGTAATAA-TTCCCTTTGAGTCTTAGATGGAGAAAAGTTATGTACATGCCATTAGTTACTTGAGTGA--TTTTTATT-AGACTATT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339282 195 + 114371477 GAAT-TATTTTCCTAAGTTATGTCA-GAGTTTCCTAAGATTGTAATTTACAGGGAAATGGATGTCACAGCCT-G-GGAGAAGGACGTGTTAATCACTTTAATGGTATCATATGTAGAGGTAATAA-TTCCCTTTGAGTCTTAGATGGAGAAAAGTTATGTACATGCCATTAGTTACTTGAGTGA--TTTTTATT-AGACTATT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 212890 195 + 637652 GAAT-TATTTTCCTAAGTTATGTCA-GAGTTTCCTAAGATTGTAATTTACAGGGAAATGGATGTCACAGCCT-G-GGAGAAGGACGTGTTAATCACTTTAATGGTATCATATGTAGAGGTAATAA-TTCCCTTTGAGTCTTAGATGGAGAAAAGTTATGTACATGCCATTAGTTACTTGAGTGA--TTTTTATT-AGACTGTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012314 191 + 81552678 GAAT-TATTTTCCTAAGTTATGTCA-GAGTTTCCTAAGATTGTAATTTACAGGGAAATGGATGTCACAGCCT-G-GGAGAAGGACGTGTTAATCACTTTAATGGTATCATATGTAGAGGTAATAA-TTCCCTTTGAGTCT----TGGAGAAAAGTTATGTACATGCTGTTAGTTACTTGAGTGA--TTTTTATT-AGACTATT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271396 186 + 108979918 GAAT-TATTTTCCTAAGTTATGGCA-GAGTTTCCTAAGATTGTAGTTGACAGGGAAATGGATGTCACAGCCT-G-GGAGGAGGACGTGTTAGTCACTTTAATGGTATCGT--------GTAAT-A-TTCCCTTTGAGTCTTAGATAGAGAAAAGTTATGTACATGCTCTTAGTTACTTGAGTGA--TTTTTATT-AGACTGTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984485 186 - 111193037 GAAT-TATTTTCCTAAGTTATGGCA-GAGTTTCCTAAGATTGTAGTTGACAGGGAAATGGATGTCACAGCCT-G-GGAGGAGGACGTGTTAGTCACTTTAATGGTATCGT--------GTAAT-A-TTCCCTTTGAGTCTTAGATAGAGAAAAGTTATGTACATGCTCTTAGTTACTTGAGTGA--TTTTTATT-AGACTGTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3378950 186 + 3644372 GAAT-TATTTTCCTAAGTTATGGCA-GAGTTTCCTAAGATTGTAGTTGACAGGGAAATGGATGTCACAGCCT-G-GGAGGAGGACGTGTTACTCACTTTAATGGTATCGT--------GTAAT-A-TTCCCTTTGAGTCTTAGATAGAGAAAAGTTATGTACATGCTCTTAGTTACTTGAGTGA--TTTTTATT-AGACTGTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332238 186 - 10304083 GAAT-TATTTTCCTAAGTTATGGCA-GAGTTTCCTAAGATTGTAATTGACAGGGAAATGGATGTCACAGCCT-G-GGAGGAGGACGTGTTCCTCACTTTAATGGTATCGT--------GTAAT-A-TTCCCTTTGAGTCTTAGATAGAGAAAAGTTATGTACATGCTATTAGTTACTTGAGTGA--TTTTTATT-AGACTGTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416065 186 - 107702431 GAAT-TATTTTCCTGAGTTATGGCA-GAGTTTCCTAAGATTGTAATTTACAGGGAAATGGATGTCACAGCCT-G-GGAGGAGGACGTGTTACTCACTTTAATGGTATCAT--------GTAAT-A-TTCCCTTTGAGTCTTAGATAGAGAAAAGTTATGTACATGCTATTAGTTACTTGAGTGA--TTTTTATT-AGACTGTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 959317 183 + 1565135 GAAT-TATTTTCCTAAGTTATGGCA-GAGTTTCCTAAGATTGTAATTTACAGGGAAATGGATGTCACAGCCT-G-GGAGGAGGACGTGTTACTCACTTTAATGGTATCGT--------GTAA-----TCCCTTTGAGTCTTAGATAGAGAAAACTTATGTACATGCTATTAGTTACTTGAGTGA--TTTTTATT-AGACTGTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3322502 194 - 13651311 GAAT-TATTTTCCTAAGTTATGGCA-GAGTTTCCTAAGATTGTAATTTACAGGGAAATGGATGTCACAGCCT-G-GGAGGAGGACATGTTACTCACTTTAATGGTATCGTATATAGAGGTAAT-A-TTCCCTTTGAGTCTTAGATGGAGAAAAGTTATGTACATGCTATTAGTTACTGGAGTGA--TTTTTATT-AGACTGTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406822 168 - 108792865 GAA--TATCTCCCTAAGTTATGTCA-GACGTTCCTAAGATCGTAG-TTACAGGGAGATGGATGTCCCTGCCT-G-GGAGGAGGGCATCTTAATCACTTTAATGGTATCGT----AGAGGCAATAA-TTCCCTTTGAGTCTTAGATGGGGAAA------------------AGTTACTTGAGTGA---TTTTATG-AGA--CTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070401 191 - 7082604 GAAT-TATCTTGCTAAGTTACGTCA-GAGGTTCTGAAGATCATAGTTTACAGGGAAATGGATGTCACTGCCT-G-GGAGAAGGACATTTTAATCACATTAATGGCATCAT----AGAGTCAATAA-TTCCCTTTGAATCTTAGATGGGGAAAAATTATGTACATACTATTAGTTACTTGAGTGA--TTTTTATG-AGACTCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556166 191 + 5243153 GAAT-TATCTTCCTAAGTTATGTCA-GAGGTTCTGAAGATTGTAGTTTACAGGGAAATGGATGTCACTGCCT-G-GGAGAAGGACATTTTAATCACTTTAATGCTATCAT----AGAGGCAATAA-TTCCCTTTGTGTCTTAGATGGGGAAAAGTTATGTACATACTATTAGTTACTTGAGTGA--TTTCTATG-AGACTGTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889777 191 - 1938448 GAAT-TATCTTCCTAAGTTATGTCA-GAGGTTCCTAAGATTGTAGTTTACAGGGAAATGGATGTCACTGCCT-G-GGAGAAGGACATTTTAATCACTTTAATGGTATCGT----AGAGGCAATAA-TTCCCTTTGAGTCTTAGATGGGGAAAAGTTATGTACATACTATTAGTTACTTGAGTGA--TTTTTATG-AGACTGTT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2612714 197 - 159902609 GAATGTATTTTCTTAAGTCATGTCA-GAGTGCTCTAAGATTGTAATTGACGGGGAAATGAATGCCACAGCCCGG-GGAGGAGGACATTTTAATCACTTCAGTGGTATCATATTTAGAGTTAATGC-TTCTGTTTGAGCCTTAGATGGAGAAAAGCTGTGTACATATTATTAGTTACTTGAGTGA--TTTTTATT-AGACTATT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 924160 199 + 1238772 GAATATATTTTCATAAGTCACATCA-GAGTGTTCTAAGATTGTAATTTACGGGGAAATGAATGTCACAGCCTGG-GGAGGAGGACATTTTAATCACTTCTGTGGTATCATGTGTAGAGTTAATGA-TTCTGTTTGAGTCTTAGATGGAGAAAAGTTATGTACGTATTATTAGTTACTTGAGTGATTTTTTTATT-AGACTATT i proCoq1.NW_012151163v1 I 19 C 0 s otoGar3.GL873658 2495669 198 + 5252280 GAATATATTTTCCTAAGTCATGTTA-GAGTGTTCTAAGCTTGTAATTCACAGGGAAATGAATGTCACAGCCTGG-GGAGGAGGACATTTTAATCACTTTAATGGTGTCACATATAGAGTTAATGA-CTCCATTTGAGCCTCAGATGGAGAAAAGTTATGTACATGCTATTAGTTACTTCGGTGA--TTTTTGTTGAGACTGTT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398305 185 - 120129022 ---T-CAGTGTCCTAAGTCACATCGCCAGTGCTCTAAGCCTGTAATGTATGGAGAAGCAAATGTCACTGCCCGG-AGAGAAGGCCATTTTACTCACTCGCATGGTGTTGTGTGCAGAGTGAAT-----GCTGTTGAGTC----GTGTGGGCGAGCTGTGCACCTACT-CTAATCACTCGGATAC--TTCACGCC-GGGCCATT i mm10.chr12 C 0 C 0 s canFam3.chr17 2011952 197 + 64289059 AAATGTATTTTCCCAAATAATGTCA-GAGCATTCTAAGATTGTAATTTACAGGGAAATGAATGTCATAGCCT-GTAGAGGAGGATGTTTTAATCACTTTAATGGTATCATATATAGAGTTAATGA-TTCCTTTTGAGTTGTAGATGGGGAAAAGTTATGTACATAGCATTAGTTACTTGAGTGA--CTTTTATT-GGACTGTT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 513400 195 + 2232271 AAATGTATTTTCCTAAGTAATGTCA-GAGTGTTCTAAAATTGTAATTTACAGAGGAATGAATGTCAGAGCTT-GTAGAGAAGGACATTTTAATCACT---AAGGTATCATATGTAGAGTTAGTGATTTCCTTTTGAGTCTTAGATGGGGAAAAGTTATGTACCTACCATTATTTCCTTGATTCA--TTTTTATT-GGACTATT i dasNov3.JH580157 C 0 M 715 a score=317836.000000 s hg38.chr2_KI270769v1_alt 15375 22 + 120616 TTTCTCATCATTTGGAAATTGT s panTro5.chr2A 3452705 22 + 111504155 TTTCTCATCATTTGGAAATTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339477 22 + 114371477 TTTCTCATCATTTGGAAATTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213085 22 + 637652 TTTCTCATCATTTGGAAATTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012505 22 + 81552678 TTTCTCATCATTTGGAAGTTGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271582 22 + 108979918 CTTCTCATCATTTGGAAGTTGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984671 22 - 111193037 CTTCTCATCATTTGGAAGTTGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379136 22 + 3644372 CTTCTCATCATTTGGAAGTTGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332424 22 - 10304083 TTTCTCATCATTTGGAAGTTGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416251 22 - 107702431 TTTCTCATCATTTGGAAGTTGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 959500 22 + 1565135 TTTCTCATCATTTGGAAGTTGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3322696 22 - 13651311 TTTCTCATCATTTGGAAGTTGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3406990 22 - 108792865 TTGCTCAACATTTGGAAGTTGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070592 22 - 7082604 TTTCTCAACATTTGGAGGTTGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556357 22 + 5243153 TTTCTCAACATTTGGAAGCTGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889968 21 - 1938448 TTTCTCAACATTTGGA-GTTGT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2612911 22 - 159902609 TTTCTCATCTTTTGGAAGTTGT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 924359 22 + 1238772 TTTCTCATCTTTTAGAAGTTGT i proCoq1.NW_012151163v1 C 0 I 112 s otoGar3.GL873658 2495867 22 + 5252280 TCTCTCATCTTTTGGAAGTTAT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398490 19 - 120129022 TGTCCTAACA-CTGGAAGTC-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2012149 22 + 64289059 TTTCTCATCTTTTGGAAGTCAT i canFam3.chr17 C 0 C 0 e dasNov3.JH580157 513595 715 + 2232271 M a score=120556.000000 s hg38.chr2_KI270769v1_alt 15397 9 + 120616 -GTAATGCCT s panTro5.chr2A 3452727 9 + 111504155 -GTAATGCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339499 9 + 114371477 -GTAATGCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213107 9 + 637652 -GTAATGCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012527 9 + 81552678 -GTAATGCCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271604 9 + 108979918 -GTGATGCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984693 9 - 111193037 -GTGATGCCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379158 9 + 3644372 -GTGATGCCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332446 9 - 10304083 -GTGATGCCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416273 9 - 107702431 -GTGATGCCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 959522 9 + 1565135 -GTGATGCCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3322718 9 - 13651311 -GTGATGCCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407012 9 - 108792865 -GTAATGCCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070614 9 - 7082604 -GTAATGCCG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556379 9 + 5243153 -GTAATGCCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889989 9 - 1938448 -GTAATGCCT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2612933 9 - 159902609 -AGAATGCCT i micMur3.chr8 C 0 I 78 s otoGar3.GL873658 2495889 9 + 5252280 -GGAATGCCT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398509 9 - 120129022 -AGAGTGCCT i mm10.chr12 C 0 C 0 s canFam3.chr17 2012171 9 + 64289059 CGT-ATGCCT i canFam3.chr17 C 0 C 0 e proCoq1.NW_012151163v1 924381 112 + 1238772 I e dasNov3.JH580157 513595 715 + 2232271 M a score=532302.000000 s hg38.chr2_KI270769v1_alt 15406 57 + 120616 ACGTTCAGTTTTTCAAATAGACCCTGTATCGTACTCCTAG-CA---AAAAAACGTAAAAGT s panTro5.chr2A 3452736 57 + 111504155 ACGTTCAGTTTTTCAAATAGACCCTGTATCATACTCCTAG-CA---AAAAAAAGTAAAAGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339508 57 + 114371477 ACGTTCAGTTTTTCAAATAGACCCTGTATCATACTCCTAG-CA---AAAAAAAGTAAAAGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213116 57 + 637652 ATGTTCAGTTTTTCAAATAGACCCTGTATCGTACTGCAAG-CA---AAAAAAAGTAAAAGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012536 57 + 81552678 ATGTTCAGTTTCTCAAATAGACCCTGTATCATACTCCTAG-CA---AAAAAAAGTAAAAGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271613 56 + 108979918 GTGTTCAGTTTTTCAAATAGACCCTGTATCATACTCCTAG--A---AAAAAAAGTAAAAGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984702 56 - 111193037 GTGTTCAGTTTTTCAAATAGACCCTGTATCATACTCCTAG--A---AAAAAAAGTAAAAGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379167 56 + 3644372 GTGTTCAGTTTTTCAAATAGACCCTGTATCATACTCCTAG--A---AAAAAAAGTAAAAGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332455 56 - 10304083 GTGTTCAGTTTTTCAAATAGACCCTGTATCATACTCCTAG--A---AAAAAAAGTAAAAGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416282 56 - 107702431 GTGTTCAGTTTTTCAAATAGACCCTGTATCATACTCCTAG--A---AAAAAAAGTAAAAGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 959531 56 + 1565135 GTGTTCAGTTTTTCAAATAGACCCTGTATCATACTCCTAG--A---AAAAAAAGTAAAAAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3322727 55 - 13651311 GTTTTCAGTTTTTCAAATAGACCCTGTATCGTACTCCTAG--A---AAAAAAGG-AAAAGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407021 59 - 108792865 ACGTTCAGTTTTTCGAATAGACCCTGTATTGTATTCCCAG--TAAAAAAAAAAGCAAAAGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070623 56 - 7082604 ATATTCAGTTTTTCGAATAGAACCTGTATTGTATTCCCAG--T---AAAAAAAGCAAAAGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556388 58 + 5243153 ACGTTCAGTTTTTCGAATAGACCCTGTATTTTATTCCCGG--T-AAAAAAAAAGCAAAAGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1889998 56 - 1938448 ACGTTCAGTTTTTCGAATAGACCCTGTATTGTATTCCCAG--T---AAAAAAAGCAAAAGT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2495898 49 + 5252280 -------GGTTTTC-AGCAGGCCCTATATTTTAATCCTAG-TA---AAAGAAAGTAATACT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398518 53 - 120129022 GGGCTCAGTTTTCAGAGT----CTTGTCTTAT-TTCCTACTTC---TTAAAAAGTAATACC i mm10.chr12 C 0 C 0 s canFam3.chr17 2012180 55 + 64289059 GTGTTCATTTTTTCAAATAGA-GTTATACTTATTTCCTAATGT---AAGAAAAGTAATG-- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2612942 78 - 159902609 I e proCoq1.NW_012151163v1 924381 112 + 1238772 I e dasNov3.JH580157 513595 715 + 2232271 M a score=372886.000000 s hg38.chr2_KI270769v1_alt 15463 33 + 120616 AGTTTTTATCTAAAATC------TTTATCTCATATCAGA s panTro5.chr2A 3452793 33 + 111504155 AATTTTTATCTAAAATC------TTTATCTCATATCAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339565 33 + 114371477 AATTTTTATCTAAAATC------TTTATCTCATATCAGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213173 33 + 637652 AATTTTTATCTAAAATC------TTTATCTCATATCAGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012593 33 + 81552678 AATTTCTATCTAAAATC------TTTATCTCATATCAGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271669 33 + 108979918 AATTTTTATCTAAAATC------TTTATCTCATATCAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984758 33 - 111193037 AATTTTTATCTAAAATC------TTTATCTCATATCAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379223 33 + 3644372 AATTTTTATCTAAAATC------TTTATCTCATATCAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332511 33 - 10304083 AATTTTTATCTAAAATC------TTTATCTCATATCAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416338 33 - 107702431 AATTTTTATCTAAAATC------TTTATCTCATATCAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 959587 33 + 1565135 AATTTTTATCTAAAATC------TTTATCTCATATCAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3322782 33 - 13651311 AATTTTTATCTAAAATC------TTTATCTCATGTCAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407080 33 - 108792865 AACACTGATCTAAAATC------TTTATCTCATATCAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070679 33 - 7082604 AATACTGATCTAAAATC------TTTATCTCATATCAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556446 33 + 5243153 AATACTGATCTAAAATC------TTTATCTCATATCAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890054 33 - 1938448 AATACTGATCTAAAATC------TTTATCTCAGATCAAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2495947 32 + 5252280 TATTTCAA-CTTAGACC------TTTTTCTCCTCTGAAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398571 32 - 120129022 TATTTAAATTTAGAAAT------TTT-TCTCCTTCCAAA i mm10.chr12 C 0 C 0 s canFam3.chr17 2012235 30 + 64289059 ---TTTAAGTTTAGATC------TTTTTCTCATACCAAA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 514311 36 + 2232271 AGTATTTATTTAAATTTAGATCGTTTTTCTCAT---AAA i dasNov3.JH580157 M 715 C 0 e micMur3.chr8 2612942 78 - 159902609 I e proCoq1.NW_012151163v1 924381 112 + 1238772 I a score=321074.000000 s hg38.chr2_KI270769v1_alt 15496 22 + 120616 CTAACTTCATTATTAGAATTTT s panTro5.chr2A 3452826 22 + 111504155 CTAACTTCATTATTAGAATTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339598 22 + 114371477 CTAACTTCATTATTAGAATTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213206 22 + 637652 CTAACTTCATTATTAGAATTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012626 22 + 81552678 CTAACTTCATTATTAGAATTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271702 22 + 108979918 CTAACTTCATTATTAGAATTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984791 22 - 111193037 CTAACTTCATTATTAGAATTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379256 22 + 3644372 CTAACTTCATTATTAGAATTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332544 22 - 10304083 CTAACTTCATTATTAGAATTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416371 22 - 107702431 CTAACTTCATTATTAGAATTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 959620 22 + 1565135 CTAACTTCATTATTAGAATTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3322815 22 - 13651311 CTAACGTCACTATTAGAATTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407113 22 - 108792865 CTAACTTCATCGTTAGAATTCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070712 22 - 7082604 CTAACTTCGTTGTTAGAATTCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556479 22 + 5243153 CTAACTTCATTGTTAGAATTCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890087 22 - 1938448 CTAACTTCATTGTTAGAATTCT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613020 22 - 159902609 CTAACTTTATCATCAGAGTTCC i micMur3.chr8 I 78 C 0 s otoGar3.GL873658 2495979 22 + 5252280 CTAACTTCACTCTCAGGGTTCT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398603 19 - 120129022 CTAAGGTC---GTCAGAGCGCT i mm10.chr12 C 0 C 0 s canFam3.chr17 2012265 22 + 64289059 ATAACTTTATTATCAGAGTTCT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 514347 22 + 2232271 CTAACTTCATTATCAGAGTTCC i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 924381 112 + 1238772 I a score=632937.000000 s hg38.chr2_KI270769v1_alt 15518 40 + 120616 ACATGTCATGTACAGTAATTATGAGATTTTCATAAGATTT s panTro5.chr2A 3452848 40 + 111504155 ACATGTCATGTACAGTAATTATGAGATTTTCATAAGATTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339620 40 + 114371477 ACATGTCATGTACAGTAATTATGAGATTTTCATAAGATTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213228 40 + 637652 ACATGTCATGTACAGTAATTATGAGATTTTCATAAGATTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012648 40 + 81552678 ACATGTCATGTACAGTAATTATGAGATTTTCGTAAGATTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271724 40 + 108979918 ACATGTCATGTACAGTAATTATGAGATTTTCATAAGATTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984813 40 - 111193037 ACATGTCATGTACAGTAATTATGAGATTTTCATAAGATTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379278 37 + 3644372 ACATGTCATGTACAGTAATTATGAGATTTTCATAAGA--- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332566 40 - 10304083 ACATGTCATGTACAGTAATTATGAGATTTTCATAAGATTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416393 40 - 107702431 ACATGTCATGTACAATAATTATGAGATTTTCACAAGATTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 959642 40 + 1565135 ACATGTCATGTACAGTAATTATGAGATTTTCATAAGATTT i manLeu1.NW_012104432v1 C 0 T 18387 s colAng1.NW_012118821v1 3322837 40 - 13651311 ACATGTCATGTACAGTAATTATGAGATTTTCATAACATTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407135 40 - 108792865 ATATGTTGTGTACAGTAATTATGAGATTATCATAAGATTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070734 40 - 7082604 ACATGTTGTGTACGGTAATTATGAGATTATCGTAATATTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556501 40 + 5243153 ACATGTTGTGTACAGTAATTATGAGATTATCGTAAGATTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890109 40 - 1938448 ACATGTTGTGTACAGTAATTATGAGATTATCGTAAGATTT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613042 40 - 159902609 ACATGTTGTGTACAGTAATTGTGAGATTTTCATGAGATTT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 924493 40 + 1238772 ACATGTTGTGTACAGTAATTGTGAGATTTTCGTGAGATTT i proCoq1.NW_012151163v1 I 112 C 0 s otoGar3.GL873658 2496001 30 + 5252280 ACATGTAGTGTACAGTAGTTACAGGATTTC---------- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398622 40 - 120129022 GCATGGCCTATCCAGTAGAGATAGACTTTCTATAAGATAT i mm10.chr12 C 0 I 4 s canFam3.chr17 2012287 40 + 64289059 ACATGTCATCTACAGTAATTATGAGATTTTCATAAGACTT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 514369 38 + 2232271 ATATATCA--TACAGTAATTGTAAGGTTTCCATAAGATTT i dasNov3.JH580157 C 0 C 0 a score=9557.000000 s hg38.chr2_KI270769v1_alt 15558 1 + 120616 C s panTro5.chr2A 3452888 1 + 111504155 C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339660 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213268 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012688 1 + 81552678 C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271764 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984853 1 - 111193037 C i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3332606 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416433 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3322877 1 - 13651311 C i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407175 1 - 108792865 C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070774 1 - 7082604 C i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556541 1 + 5243153 C i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890149 1 - 1938448 C i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613082 1 - 159902609 C i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 924533 1 + 1238772 C i proCoq1.NW_012151163v1 C 0 I 123 s canFam3.chr17 2012327 1 + 64289059 T i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 514407 1 + 2232271 C i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91398662 4 - 120129022 I e otoGar3.GL873658 2496031 0 + 5252280 C e manLeu1.NW_012104432v1 959682 18387 + 1565135 T e macNem1.NW_012011978v1 3379315 0 + 3644372 C a score=823454.000000 s hg38.chr2_KI270769v1_alt 15559 67 + 120616 TTTCACAAAGTT-TAAAGTTTTATGTGGTATACTTTAGATTCTGATTTTAAAAATAGTTTCTTTGCTT s panTro5.chr2A 3452889 67 + 111504155 TTTCACAAAGTT-TAAAGTTTTATGTGGTATACTTTAGATTCTGATTTTAAAAATAGTTTCTTTGCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339661 67 + 114371477 TTTCACAAAGTT-TAAAGTTTTATGTGGTATACTTTAGATTCTGATTTTAAAAATAGTTTCTTTGCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213269 67 + 637652 TTTCACAAAGTT-TAAAGTTTTATGTGGTATACTTTAGATTCTGATTTTAAAAATAGTTTCTTTGCTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012689 67 + 81552678 TTTCACAAAGTT-TAAAGTTTTATGTGGTATACTTTAGATTCTGATTTTAAAAGTAATTTCTTTGCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271765 67 + 108979918 TTTCACAAAGTT-AAAAGTTTTATGTGGTATACTTTAGATTCTGATTTTTAAAATAATTTATTTGCTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984854 67 - 111193037 TTTCACAAAGTT-AAAAGTTTTATGTGGTATACTTTAGATTCTGATTTTTAAAATAATTTATTTGCTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379315 67 + 3644372 TTTCACAAAGTT-AAAAGTTTTATGTGGTATACTTTAGATTCTGATTTTTAAAATAATTTATTTGCTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332607 67 - 10304083 TTTCACAAAGTT-AAAAGTTTTATGTGGTATACTTTAGATTCTGATTTTTAAAATAATTTCTTTGCTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416434 67 - 107702431 TTTCACAAAGTT-AAAAGTTTTATGTGGTATACTTTAGATTCTGATTTTTAAAATAATTTCTTTGCTG i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3322878 67 - 13651311 TTTCACAAAGTT-AAAAGTTTTATGTGGTGTACTTTAGATTCTGATATTTAAAATAATTTCTTTGCTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407176 67 - 108792865 CTTCACAAAGTT-TAAAATTTTAGGTGGTATACTTTAGATTCTGATTTTAAAAATAATTTCTTTGCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070775 67 - 7082604 CTTCACAAAGTT-TAAAATTTTAGGTGGTGTACTTTAGAGTCTGTTTTTAAAAATAATTTCTTTGCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556542 67 + 5243153 CTTCACAAAGTT-TAAAATTTTAGGTGGTATACTTTAGATTCTGATTTTAAAAATAATTTCTTTGCTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890150 67 - 1938448 CTTCACAACGTT-TAAAATTTTAGGTGGTATACTTTAGATTCTGATTTTAAAAATAATTTCTTTGCTG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613083 62 - 159902609 CCTCCCAGAGCT-GAAAGCTTTATGTGGTA-----TAAATTCTGATTTTAAAAATTATTTCTTCATTG i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2496031 66 + 5252280 CTCCAGAGAGCT-T-AAGTATTATGTGCTACACTTTAAATTCCGATTTTAAAAATAATTTCTTCCTTG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398666 67 - 120129022 GTTCTTGGAGCC-TAATGTATTATGTGGCATACTTCAAATTCTAATTTTAAAAAATAtttcttttttt i mm10.chr12 I 4 I 197 s canFam3.chr17 2012328 66 + 64289059 -TCTCTAGCATT-TAAAGTTTTATAGGGTATGCTTTAAATTGTAATTATAAAAATAATTTCTTCACCA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 514408 68 + 2232271 CTTCACAGATTTGTAAGGTCTTACATGGCATACCttatattttaattttaaaaataattttttCACCA i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 924534 123 + 1238772 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=286136.000000 s hg38.chr2_KI270769v1_alt 15626 22 + 120616 CATATTTCTGACATC-TATCATT s panTro5.chr2A 3452956 22 + 111504155 CATATTTCTGACATC-TATCATT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339728 22 + 114371477 CATATTTCTGACATC-TATCATT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213336 22 + 637652 CATATTTCTGACATC-TATCATT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012756 22 + 81552678 CATATTTCTGACATC-TATCATT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271832 22 + 108979918 CATATTTCTGGCATC-TATCATT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984921 22 - 111193037 CATATTTCTGGCATC-TATCATT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379382 22 + 3644372 CATATTTCTGGCATC-TATCATT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332674 22 - 10304083 CATATTTCTGGCATC-TATCATT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416501 22 - 107702431 CATATTTCTGGCATC-TGTCATT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3322945 22 - 13651311 CATGTTTCTGGAATC-TATCATT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407243 22 - 108792865 CGTATTTCTGATATC-TATCATT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070842 22 - 7082604 CGTATTTCTGATATC-TGTCATT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556609 22 + 5243153 CATATTTCTGATATC-TATCATT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890217 22 - 1938448 CATATTTCTGATATC-TATCATT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613145 22 - 159902609 CACATGTCCGACATC-TATCACT i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2496097 23 + 5252280 CACATTTCTGATGTCATATCACT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398930 22 - 120129022 GACATTTCCAATATC-TAACATT i mm10.chr12 I 197 C 0 s canFam3.chr17 2012394 22 + 64289059 AACACTTTTGACATC-TAATATC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 514476 22 + 2232271 AACATTTCTGACATC-TAATATT i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 924534 123 + 1238772 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=20394.000000 s hg38.chr2_KI270769v1_alt 15648 8 + 120616 GAAAATAG s panTro5.chr2A 3452978 8 + 111504155 GAAAATAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339750 8 + 114371477 GAAAATAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213358 8 + 637652 GAAAATAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012778 8 + 81552678 GAAAATAG i nomLeu3.chr19 C 0 C 0 s otoGar3.GL873658 2496120 8 + 5252280 GAGAATGG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91398952 8 - 120129022 GAAAACAA i mm10.chr12 C 0 C 0 s canFam3.chr17 2012416 7 + 64289059 -AAAACGG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 514498 8 + 2232271 GAAAATAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613167 0 - 159902609 C e saiBol1.JH378218 3070864 0 - 7082604 C e proCoq1.NW_012151163v1 924534 123 + 1238772 I e cebCap1.NW_016107454v1 556631 0 + 5243153 C e aotNan1.NW_018507213v1 1890239 0 - 1938448 C e calJac3.chr14 3407265 0 - 108792865 C e colAng1.NW_012118821v1 3322967 0 - 13651311 C e manLeu1.NW_012104432v1 959682 18387 + 1565135 T e chlSab2.chr14 3416523 0 - 107702431 C e cerAty1.NW_012000820v1 3332696 0 - 10304083 C e macNem1.NW_012011978v1 3379404 0 + 3644372 C e macFas5.chr13 4984943 0 - 111193037 C e rheMac8.chr13 3271854 0 + 108979918 C a score=5348.000000 s hg38.chr2_KI270769v1_alt 15656 2 + 120616 AG s panTro5.chr2A 3452986 2 + 111504155 AG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339758 2 + 114371477 AG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213366 2 + 637652 AG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012786 2 + 81552678 AG i nomLeu3.chr19 C 0 C 0 s otoGar3.GL873658 2496128 2 + 5252280 AG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2012423 2 + 64289059 AG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 514506 2 + 2232271 AG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613167 0 - 159902609 C e mm10.chr12 91398960 0 - 120129022 C e saiBol1.JH378218 3070864 0 - 7082604 C e proCoq1.NW_012151163v1 924534 123 + 1238772 I e cebCap1.NW_016107454v1 556631 0 + 5243153 C e aotNan1.NW_018507213v1 1890239 0 - 1938448 C e calJac3.chr14 3407265 0 - 108792865 C e colAng1.NW_012118821v1 3322967 0 - 13651311 C e manLeu1.NW_012104432v1 959682 18387 + 1565135 T e chlSab2.chr14 3416523 0 - 107702431 C e cerAty1.NW_012000820v1 3332696 0 - 10304083 C e macNem1.NW_012011978v1 3379404 0 + 3644372 C e macFas5.chr13 4984943 0 - 111193037 C e rheMac8.chr13 3271854 0 + 108979918 C a score=5325.000000 s hg38.chr2_KI270769v1_alt 15658 3 + 120616 GAG s panTro5.chr2A 3452988 3 + 111504155 GAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339760 3 + 114371477 GAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213368 3 + 637652 GAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012788 3 + 81552678 GAG i nomLeu3.chr19 C 0 C 0 s otoGar3.GL873658 2496130 3 + 5252280 GAA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2012425 3 + 64289059 GAG i canFam3.chr17 C 0 I 8 e micMur3.chr8 2613167 0 - 159902609 C e mm10.chr12 91398960 0 - 120129022 C e saiBol1.JH378218 3070864 0 - 7082604 C e proCoq1.NW_012151163v1 924534 123 + 1238772 I e dasNov3.JH580157 514508 0 + 2232271 C e cebCap1.NW_016107454v1 556631 0 + 5243153 C e aotNan1.NW_018507213v1 1890239 0 - 1938448 C e calJac3.chr14 3407265 0 - 108792865 C e colAng1.NW_012118821v1 3322967 0 - 13651311 C e manLeu1.NW_012104432v1 959682 18387 + 1565135 T e chlSab2.chr14 3416523 0 - 107702431 C e cerAty1.NW_012000820v1 3332696 0 - 10304083 C e macNem1.NW_012011978v1 3379404 0 + 3644372 C e macFas5.chr13 4984943 0 - 111193037 C e rheMac8.chr13 3271854 0 + 108979918 C a score=16625.000000 s hg38.chr2_KI270769v1_alt 15661 14 + 120616 GGgggaggccgagg s panTro5.chr2A 3452991 14 + 111504155 GGgggaggccgagg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339763 14 + 114371477 GGgggaggccgagg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213371 14 + 637652 GGgggaggctgagg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012791 14 + 81552678 GGgggaggccgagg i nomLeu3.chr19 C 0 C 0 s canFam3.chr17 2012436 14 + 64289059 GGAAGAGGACTAGG i canFam3.chr17 I 8 C 0 e micMur3.chr8 2613167 0 - 159902609 C e mm10.chr12 91398960 0 - 120129022 C e saiBol1.JH378218 3070864 0 - 7082604 C e proCoq1.NW_012151163v1 924534 123 + 1238772 I e dasNov3.JH580157 514508 0 + 2232271 C e otoGar3.GL873658 2496133 0 + 5252280 C e cebCap1.NW_016107454v1 556631 0 + 5243153 C e aotNan1.NW_018507213v1 1890239 0 - 1938448 C e calJac3.chr14 3407265 0 - 108792865 C e colAng1.NW_012118821v1 3322967 0 - 13651311 C e manLeu1.NW_012104432v1 959682 18387 + 1565135 T e chlSab2.chr14 3416523 0 - 107702431 C e cerAty1.NW_012000820v1 3332696 0 - 10304083 C e macNem1.NW_012011978v1 3379404 0 + 3644372 C e macFas5.chr13 4984943 0 - 111193037 C e rheMac8.chr13 3271854 0 + 108979918 C a score=210257.000000 s hg38.chr2_KI270769v1_alt 15675 245 + 120616 cgggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatac-aaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctacccgggaggctgaggcaggagaatggtctgggaggcagagcttgcagtgagccaagatcacgccactgcactccagcctgggc-gacagagcaagactccgtttcaaaaaaagaaaaaaaagaaaaa s panTro5.chr2A 3453005 245 + 111504155 cgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatac-aaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctacccgggaggctgaggcaggagaatggtctgggaggcagagcttgcagtgagccaagatcacgccactgcactccagcctgggc-gacagagcaagactctgtttcaaaaaaagaaaaaaaagaaaaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3339777 245 + 114371477 cgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatac-aaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctacccgggaggctgaggcaggagaatggtctgggaggcagagcttgcagtgagccaagatcacgccactgcactccagcctgggc-gacagagcaagactctgtttcaaaaaaagaaaaaaaagaaaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213385 245 + 637652 cgggcggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatac-aaaaaattagccgggcgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagagtggtctgggaggcagagcttgcagtgagccaagatcgcgccactgcactgcagcctgggt-gacagagcaagactctgtttcaaaaaaagaaaaaaaagaaaaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3012805 238 + 81552678 cgggcagatcacgaggtc--gggatcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagccgggtgtggtggcgggcgcctgtagtcccagctactcgggaggttgaggcaggagaatggtctgggaggcaaagcttgcagtgagccgagatcacgccac--cactccagcctgggtggacagagcaagactctgtctcaaa-----aaagaaaagaaaaa i nomLeu3.chr19 C 0 C 0 e micMur3.chr8 2613167 0 - 159902609 C e mm10.chr12 91398960 0 - 120129022 C e canFam3.chr17 2012450 0 + 64289059 C e saiBol1.JH378218 3070864 0 - 7082604 C e proCoq1.NW_012151163v1 924534 123 + 1238772 I e dasNov3.JH580157 514508 0 + 2232271 C e otoGar3.GL873658 2496133 0 + 5252280 C e cebCap1.NW_016107454v1 556631 0 + 5243153 C e aotNan1.NW_018507213v1 1890239 0 - 1938448 C e calJac3.chr14 3407265 0 - 108792865 C e colAng1.NW_012118821v1 3322967 0 - 13651311 C e manLeu1.NW_012104432v1 959682 18387 + 1565135 T e chlSab2.chr14 3416523 0 - 107702431 C e cerAty1.NW_012000820v1 3332696 0 - 10304083 C e macNem1.NW_012011978v1 3379404 0 + 3644372 C e macFas5.chr13 4984943 0 - 111193037 C e rheMac8.chr13 3271854 0 + 108979918 C a score=108480.000000 s hg38.chr2_KI270769v1_alt 15920 10 + 120616 gaaaaTGGAG s panTro5.chr2A 3453250 10 + 111504155 gaaaaTGGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340022 10 + 114371477 gaaaaTGGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213630 10 + 637652 gaaaaTGGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013043 10 + 81552678 gaaaaTGGAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271854 10 + 108979918 GAAAATGGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984943 10 - 111193037 GAAAATGGAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379404 10 + 3644372 GAAAATGGAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332696 10 - 10304083 GAAAATGGAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416523 10 - 107702431 GAAAATGGAG i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3322967 10 - 13651311 GAAAATGGAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407265 10 - 108792865 GAAAATGGAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070864 10 - 7082604 GAAAATGGAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556631 10 + 5243153 GAAAATGTAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890239 10 - 1938448 GAAAATGGAG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613167 10 - 159902609 GAAAGTGGAG i micMur3.chr8 C 0 C 0 e mm10.chr12 91398960 0 - 120129022 C e canFam3.chr17 2012450 0 + 64289059 C e proCoq1.NW_012151163v1 924534 123 + 1238772 I e dasNov3.JH580157 514508 0 + 2232271 C e otoGar3.GL873658 2496133 0 + 5252280 C e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=39952.000000 s hg38.chr2_KI270769v1_alt 15930 4 + 120616 GAGG s panTro5.chr2A 3453260 4 + 111504155 GAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340032 4 + 114371477 GAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213640 4 + 637652 GAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013053 4 + 81552678 GAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271864 4 + 108979918 GTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984953 4 - 111193037 GTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379414 4 + 3644372 GTGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332706 4 - 10304083 GTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416533 4 - 107702431 GAGG i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3322977 4 - 13651311 GAGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407275 4 - 108792865 GAGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070874 4 - 7082604 GAGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556641 4 + 5243153 GAGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890249 4 - 1938448 GAGG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613177 4 - 159902609 GAGA i micMur3.chr8 C 0 C 0 s dasNov3.JH580157 514508 4 + 2232271 GAGG i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91398960 0 - 120129022 C e canFam3.chr17 2012450 0 + 64289059 C e proCoq1.NW_012151163v1 924534 123 + 1238772 I e otoGar3.GL873658 2496133 0 + 5252280 C e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=111537.000000 s hg38.chr2_KI270769v1_alt 15934 9 + 120616 GCCACCAGG s panTro5.chr2A 3453264 9 + 111504155 GCCACCAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340036 9 + 114371477 GCCACCAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213644 9 + 637652 GCCACCAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013057 9 + 81552678 GCCACCAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271868 9 + 108979918 GCCACCAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984957 9 - 111193037 GCCACCAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379418 9 + 3644372 GCCACCAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332710 9 - 10304083 GCCACCAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416537 9 - 107702431 GCCACCAGG i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3322981 9 - 13651311 GCCACCAGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407279 9 - 108792865 GCCACTGGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070878 9 - 7082604 GCCACTGGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556645 9 + 5243153 GCCACTGGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890253 9 - 1938448 GCCACTGGG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613181 9 - 159902609 ACCACCAGG i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2496133 9 + 5252280 GCCACCAGG i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 514512 9 + 2232271 ACCAGTAGG i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91398960 0 - 120129022 C e canFam3.chr17 2012450 0 + 64289059 C e proCoq1.NW_012151163v1 924534 123 + 1238772 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=110275.000000 s hg38.chr2_KI270769v1_alt 15943 10 + 120616 AAGGGGAATA s panTro5.chr2A 3453273 10 + 111504155 AAGGGGAATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340045 10 + 114371477 AAGGAGAATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213653 10 + 637652 AAGGGGAATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013066 9 + 81552678 -AGGGGAATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271877 10 + 108979918 AAGGGGAATA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984966 10 - 111193037 AAGGGGAATA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379427 10 + 3644372 AAGGGGAATA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332719 10 - 10304083 AAGGGGAATG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416546 10 - 107702431 AAGGGGAATA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3322990 10 - 13651311 AAGGGGAATA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407288 10 - 108792865 AAGCAGAATA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070887 10 - 7082604 AAGCAGAATA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556654 10 + 5243153 AAGCAGAATA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890262 10 - 1938448 AAGCAGAATA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613190 10 - 159902609 AAGGGGAACA i micMur3.chr8 C 0 I 3 s otoGar3.GL873658 2496142 10 + 5252280 AAGGGGAACA i otoGar3.GL873658 C 0 I 3 s mm10.chr12 91398960 10 - 120129022 AATGGAAATA i mm10.chr12 C 0 I 3 s dasNov3.JH580157 514521 4 + 2232271 ------AATG i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2012450 0 + 64289059 C e proCoq1.NW_012151163v1 924534 123 + 1238772 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=149596.000000 s hg38.chr2_KI270769v1_alt 15953 11 + 120616 AGGTGGAAAAT s panTro5.chr2A 3453283 11 + 111504155 AGGTGGAAAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340055 11 + 114371477 AGGTGGAAAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213663 11 + 637652 AGGTGGAaaat i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013075 11 + 81552678 AGGTGGAAAAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271887 11 + 108979918 AGGTAGAAAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984976 11 - 111193037 AGGTAGAAAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379437 11 + 3644372 AGGTAGAAAAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332729 11 - 10304083 AGGTAGAAAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416556 11 - 107702431 AGGTAGAAAAT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323000 11 - 13651311 AGGTAGAAAAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407298 11 - 108792865 AGGTGGAAAAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070897 11 - 7082604 AGGTGGAAAAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556664 11 + 5243153 AGGTGGAAAAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890272 11 - 1938448 AGGTGGAAAAT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613203 11 - 159902609 AGGTAGAAAAC i micMur3.chr8 I 3 I 1 s otoGar3.GL873658 2496155 11 + 5252280 AGGTGGAAAAC i otoGar3.GL873658 I 3 I 1 s mm10.chr12 91398973 8 - 120129022 AGGTAGAA--- i mm10.chr12 I 3 C 0 s canFam3.chr17 2012450 11 + 64289059 AAGTGGAAAAG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 514525 8 + 2232271 ---TGGAAAAC i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 924534 123 + 1238772 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=822867.000000 s hg38.chr2_KI270769v1_alt 15964 61 + 120616 AATAA-GATAAAAATAGCA--AAAAACACACTAAGAAAATAAGCAATTATAATTTCAAATAGCA s panTro5.chr2A 3453294 61 + 111504155 AATAA-GATAAAAATAGCA--AAAAACACACTAAGAAAATAAGCAATTATAATTTCAAATAGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340066 61 + 114371477 AATAA-GATAAAAATAGCA--AAAAACACACTAAGAAAATAAGCAATTATAATTTCAAATAGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213674 61 + 637652 aataa-gataaaaatagca--aaaaacacactaagaaaataagcaattataatttcaaatagca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013086 61 + 81552678 AATAA-GATAAAAATAGCA--AAAAACACACTAAGAAAATAAGCAATTATAATTTCAAATAGCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271898 61 + 108979918 AATAA-GATAAAAATAGCA--TAAAGCACACTAAGAAAATAAGCAATTATAATTTCAAATAGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4984987 61 - 111193037 AATAA-GATAAAAATAGCA--TAAAGCACACTAAGAAAATAAGCAATTATAATTTCAAATAGCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379448 61 + 3644372 AATAA-GATAAAAATAGCA--TAAAGCACACTAAGAAAATAAGCAATTATAATTTCAAATAGCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332740 61 - 10304083 AATAA-GATAAAAATAGCA--TAAAGCACACTAAGAAAATAAGCAATTATAATTTCAAATAGCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416567 61 - 107702431 AGTAA-GATAAAAATAGCA--TAAAGCACACGAAGAAAATAAGCAATTATAATTTCAAATAGCA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323011 61 - 13651311 AATAA-GATAAAAATAGCA--TAAAGCACACTAAGAAAATAAGCAATTATAATTTCAAATAGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407309 61 - 108792865 AACAA-GAAAAAAATAGTA--AAAACCACACTAAGAAAACAAGCAATGATAATTTCAAATAGCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070908 61 - 7082604 AACAAGGAAAAAAATAGT---AAAACCACACTAAGAAAATAAGCAATGATAATTTCAAATAGCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556675 61 + 5243153 AACAA-GAAAAAAATAGTA--AAAACCACACTAGGAAAATAAGCAATGATAATTTCAAATCGCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890283 61 - 1938448 AACAA-GAAAAAAATAGTA--GAAACCACACTAAGAAAATAAGCAATGATAAATTCAAATAGCA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613215 60 - 159902609 AATGA-GATAAAAATAACA---AAAACACGCTGAGAAAATAAGTAATTATAATTTCAAATAGCA i micMur3.chr8 I 1 I 280 s proCoq1.NW_012151163v1 924657 60 + 1238772 AATGA-GATAAAAATAACA---AAAACACGCTGAGAAGATAAGTAATTATAATTTCAAATAGCA i proCoq1.NW_012151163v1 I 123 I 248 s otoGar3.GL873658 2496167 58 + 5252280 AATGA-GATGAAAATAGCA-GGAGAACATGCTAAGAA-ATAAGTAATTATAATTCCAAGTA--- i otoGar3.GL873658 I 1 C 0 s mm10.chr12 91398981 57 - 120129022 AAT---GTTGAGAATAGCAAAAAAAACCCACTAAGAAAAT----AATTACCATTTCAAATAGCG i mm10.chr12 C 0 I 4 s canFam3.chr17 2012461 57 + 64289059 AATGG-AAT-AAAACAGCA--AAAAGCACTCTGAGAAAACACATAATTACAATTTCACATG--- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 514533 61 + 2232271 ATTAA-AATAAAAATAACA--GAAAACATACAGAGAAAATAAGTAATTATAATTTCAAATAATA i dasNov3.JH580157 C 0 C 0 e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=307529.000000 s hg38.chr2_KI270769v1_alt 16025 32 + 120616 GACGGC-ATGCGATCATAAGAACTGGCTCTGGC s panTro5.chr2A 3453355 32 + 111504155 GACGGC-ATGCGATCATAAGAACTGGCTCTGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340127 32 + 114371477 GACGGC-ATGCGATCATAAGAACTGGCTCTGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213735 32 + 637652 gatggc-aTGCGATCATAAAAACTGGCTCTGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013147 32 + 81552678 GACAGC-ATGCGATCATAAGAACTGGCTCTGGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271959 32 + 108979918 GGCAGC-ATGCAATCATAAGAACTGGCTCTGGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985048 32 - 111193037 GGCAGC-ATGCAATCATAAGAACTGGCTCTGGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379509 32 + 3644372 GGCAGC-ATGCAATCATAAGAACTGGCTCTGGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332801 32 - 10304083 GGCAGC-ATGCAATCATAAGAACTGGCTCTGGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416628 32 - 107702431 GGCAGC-ATGCAGTCATAAGAACTGGCTCTGGC i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323072 32 - 13651311 GGCAGC-ATGCAATCATAAGAACTGGCTCTGGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407370 32 - 108792865 GGCAGC-GTGCGATTATAAGGACTGGCTGTGGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3070969 32 - 7082604 GGCTGC-ATGCAATTATAAGAACTGGCTGCGGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556736 32 + 5243153 GGCAGC-ATGCAATTATAAGAACTGGCTGTGGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890344 32 - 1938448 GGCAGC-ATGCGATTATAAGAACTGGCTGTGGC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2496225 32 + 5252280 GACAGCTATTTGATAATAAGAACTGGCTCT-GT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91399042 32 - 120129022 GTAGGG-GAGTGCTCACAAGAAGCAGTGCTggc i mm10.chr12 I 4 I 2522 s canFam3.chr17 2012518 26 + 64289059 GGCAGC-ATGTCGTCAAAAGCTCCAGG------ i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 514594 25 + 2232271 GGAAGC-ATATAGTCATAAGAA-TGGC------ i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613275 280 - 159902609 I e proCoq1.NW_012151163v1 924717 248 + 1238772 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=626667.000000 s hg38.chr2_KI270769v1_alt 16057 69 + 120616 TCTCACAG-TAGCCAC-AGTCACATCCC---AC--CTTGGAAGGA-----------------------------TGTGCTGG----TTCCTCCTGGCCGGTC---------GTCCCCT s panTro5.chr2A 3453387 69 + 111504155 TCTCACAG-TAGCCAC-AGTCACATCCC---AC--CTTGGAAGGA-----------------------------TGTGCTGG----TTCCTCCTGGCCGGTC---------GTCCCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340159 69 + 114371477 TCTCACAG-TAGCCAC-AGTCACATCCC---AC--CTTGGAAGGA-----------------------------TGTGCTGG----TTCCTCCTGGCCGGTC---------GTCCCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213767 69 + 637652 TCTCACAG-TAGCCAC-AGTCACATCCC---AC--CTTGGAAGGA-----------------------------TGTGCTGG----TTCCTCCTGGCCGGTC---------GTCCCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013179 98 + 81552678 TCTCATAG-TAGCCAA-AGTCACATCCC---AC--CTTGGAAGGAAAAGAGTGCCTGGCATGAGAGAACGATGTTGTGCTGG----TTCCTCCTGGCCGGTC---------GTCTCCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3271991 96 + 108979918 TCTCACAG-TAGCCAA-AGTCACATTCC---AC--CTTGGAAGGA--AGAGTGCACGGCATTAGAGCACGATGCTATCCTGG----TTCCTCCTGGCCAGTC---------GTCCCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985080 96 - 111193037 TCTCACAG-TAGCCAA-AGTCACATTCC---AC--CTTGGAAGGA--AGAGTGCACGGCATTAGAGCACGATGCTATCCTGG----TTCCTCCTGGCCAGTC---------GTCCCCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379541 96 + 3644372 TCTCACAG-TAGCCAA-AGTCACATTCC---AC--CTTGGAAGGA--AGAGTGCACGGCATTAGAGCACGATGCTATCCTGG----TTCCTCCTGGCCAGTC---------GTCCCCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332833 96 - 10304083 TCTCACAG-TAGCCAA-AGTCACATTCC---AC--CTTGGAAGGA--AGAGTGCACGGCATTAGAGCACGATGCTATCCTGG----TTCCTCCTGGCCGGTC---------GTCCCCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416660 96 - 107702431 TCTCACAG-TAGCCAA-AGTCACATCCC---AC--CTTGGAAGGA--AGAGTGCACAGCATTAGAGCACGATGCTATCCTGG----TTCCTCCTGGCCGGTC---------GTCCCCT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323104 96 - 13651311 TCTCACAG-TAGCCAA-AGTCACATCCC---AC--CTTGGAAGGA--AGAGTGCATGGCATTAGAGCACGATGCTATCCTGG----TTCCTCCTGGCCGATC---------GTCCCCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407402 97 - 108792865 TCTCACGG-TGGCCAC-AGTCACATCCC----T--TTTGGAAGGAAAAGAGTGCCTGGCATTAGAGCACGATGCTGTGCTGG----TTCCTCCTGGCCCATC---------CTCCCCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3071001 96 - 7082604 TCTCACGG-TGGCCAC-AGTCACATCCC----T--TCTGGAAGGAAAAGAGTGCCTGGCATTAGAGCACGATGCTCTGCTGG----TTCCTCCTGGCCAGTC---------CT-CCCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556768 97 + 5243153 TCTCATGG-GGGCCAC-AGTCACATCCC----C--TTTGGAAGGAAAGGAGTGCCTGGCATCAGAGCACGATGCTGTGCTGG----TTCCTCCTGGCCAGTC---------CTCCCCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890376 97 - 1938448 TCTCACGG-TGGCCAC-AGTCACATCCC----T--TTTGGAAGGAAAAGAGTGCCTGGCGTTAGAGCACGATGCTGTGCTGG----TTCCTCCTGGCCAGTC---------CTCCCCT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2496257 94 + 5252280 TCTTACC-----CCACTGGACATGCCCC---AC--TGTGGATGGAAAGGAGTGCTCCGTGCTGGCGGGT-----TCTTCTGGCCCATTCTCCCTGGACCCCC---------ACTCCCT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2012544 107 + 64289059 TCCCA-GG-TTGCTGA-GGTGACACCCC---ACTGTTTTGAAGGA-CGGAGTAGCAGCCTTTAGAACTCAGCACTGTGTTGG----GTCATCCTGGCCTGTCCTTTAAAGAGTCTCCT i canFam3.chr17 C 0 I 101 s dasNov3.JH580157 514619 80 + 2232271 TCTCAAGATTTGCCAT-GGTTATATGCCATTAT--TCTGAAAATAAAAGATTCCCAgg----------------gaagtgga----tttggctcaactgata---------g------ i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613275 280 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 924717 248 + 1238772 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=298279.000000 s hg38.chr2_KI270769v1_alt 16126 33 + 120616 CTCCA-------------------------------------------------------------------------------------GCATTTGTCCATTAAACAAGA-GCCCTGG s panTro5.chr2A 3453456 33 + 111504155 CTCCA-------------------------------------------------------------------------------------GCATTTGTCCATTAACCAAGA-GCCCTGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340228 33 + 114371477 CTCCA-------------------------------------------------------------------------------------GCATTTGTCCATTAACCAAGA-GCCCTGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213836 33 + 637652 CTCCA-------------------------------------------------------------------------------------GCATTTGTCCATTAACCAAGA-GCCCTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013277 33 + 81552678 CTCCA-------------------------------------------------------------------------------------GCATTTGTCCATTAACCGAGA-GCCCTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272087 33 + 108979918 CTCCA-------------------------------------------------------------------------------------GCATTTGTCCATTAACCAAGA-GCCCTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985176 33 - 111193037 CTCCA-------------------------------------------------------------------------------------GCATTTGTCCATTAACCAAGA-GCCCTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379637 33 + 3644372 CTCCA-------------------------------------------------------------------------------------GCATTTGTCCATTAACCAAGA-GCCCTGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332929 33 - 10304083 CTCCA-------------------------------------------------------------------------------------GCATTTGTCCATTAACCAAGA-GCCCTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416756 33 - 107702431 TTCCA-------------------------------------------------------------------------------------GCATTTGTCCATTAACCAAGA-GCCCTGG i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323200 33 - 13651311 CTCCA-------------------------------------------------------------------------------------GCATTTGTCCATTAACCAAGA-GCCCTGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407499 31 - 108792865 CTCCA-------------------------------------------------------------------------------------GCATTTGTCCATTAACCAAGA-GCCCT-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3071097 33 - 7082604 CTCCA-------------------------------------------------------------------------------------GCATTTGTCCATTAACCAAGA-GCCCTGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556865 33 + 5243153 CTCCA-------------------------------------------------------------------------------------GCACTTGTCCGTTAACCAAGA-GCCCTGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890473 33 - 1938448 CTCCA-------------------------------------------------------------------------------------TCATTTGTCCGTTAACCAAGA-GCCCTGG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2496351 115 + 5252280 CCCCACTGAGCCACCCTAAGTCTCAGGGAGGTGCCCAGAGCTGCAGGCAAGCTTCAGGGAGGGGCACAGCAGCCTCACTCCACTCGCACCGTGTTTG--CGTTCACCGAGG-GCCCTG- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2012752 34 + 64289059 CTCTG-------------------------------------------------------------------------------------GCCTTTTTCTGTTAACAGAGGCGTCCTGG i canFam3.chr17 I 101 C 0 s dasNov3.JH580157 514699 29 + 2232271 ----a-------------------------------------------------------------------------------------gcatctgcctaccacatagga-ggtccag i dasNov3.JH580157 C 0 I 316 e micMur3.chr8 2613275 280 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 924717 248 + 1238772 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=335877.000000 s hg38.chr2_KI270769v1_alt 16159 35 + 120616 CTCTGCTAGTTCCACATCACCTCTTGGACAAGTCT s panTro5.chr2A 3453489 35 + 111504155 CTCTGCTAGTTCCACATCACCTCTTGGACAAGTCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340261 35 + 114371477 CTCTGCTAGTTCCACATCACCTCTTGGACAAGTCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213869 35 + 637652 CTCTGCTAGTTCCACATCACCTCTTGGACAAGTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013310 35 + 81552678 CTCTGCTAGTTCCACATCACCTCTTGGACAAGTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272120 35 + 108979918 CTCTGCTGGTTCCACATCACCTCTTGGACAAGTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985209 35 - 111193037 CTCTGCTGGTTCCACATCACCTCTTGGACAAGTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379670 35 + 3644372 CTCTGCTGGTTCCACATCACCTCTTGGACAAGTCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332962 35 - 10304083 CTCTGCTGGTTCCACATCACCTCTTGGACAAGTCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416789 35 - 107702431 CTCTGCTGGTTCCACATCACCTCTTGGACAAGTCT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323233 35 - 13651311 CTCTGCTGGTTCCACATCACCTCTTGGACAAGTCT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3071130 35 - 7082604 CTCTGCTGGTTCCACATCACCTCTCGGACAAGTCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556898 35 + 5243153 CTCTGCTAGTTCCACATCACCCCTCGGACAAGTCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890506 35 - 1938448 CTCTGCTAGTTCCACATCACCTCTTGGACAAGTCT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2496466 29 + 5252280 ------CAGGTCCACATCACTTCACAGGCAAGGCT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2012786 35 + 64289059 GCCTGCTAGGTCCTTGTCACCCCTGGGGCAAGTCC i canFam3.chr17 C 0 C 0 e micMur3.chr8 2613275 280 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 924717 248 + 1238772 I e dasNov3.JH580157 514728 316 + 2232271 I e calJac3.chr14 3407530 0 - 108792865 C e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=44640.000000 s hg38.chr2_KI270769v1_alt 16194 6 + 120616 -------------GAAGAT s panTro5.chr2A 3453524 6 + 111504155 -------------GAAGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340296 6 + 114371477 -------------GAAGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213904 6 + 637652 -------------GAAGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013345 6 + 81552678 -------------GAAGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272155 6 + 108979918 -------------GAAGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985244 6 - 111193037 -------------GAAGAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379705 6 + 3644372 -------------GAAGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3332997 6 - 10304083 -------------GAAGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416824 6 - 107702431 -------------GAAGAT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323268 6 - 13651311 -------------GAAGAT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3071165 6 - 7082604 -------------GAAGAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556933 6 + 5243153 -------------GAAGAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890541 6 - 1938448 -------------GAAGAT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613555 6 - 159902609 -------------GAAGAT i micMur3.chr8 I 280 C 0 s otoGar3.GL873658 2496495 1 + 5252280 ----------------G-- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2012821 19 + 64289059 AAAGAATGAAAAAGAACAT i canFam3.chr17 C 0 C 0 e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 924717 248 + 1238772 I e dasNov3.JH580157 514728 316 + 2232271 I e calJac3.chr14 3407530 0 - 108792865 C e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=329724.000000 s hg38.chr2_KI270769v1_alt 16200 38 + 120616 CAGAATGCT-GAGGCTGTGCTCTGCCGAGGCTGGTAAAA s panTro5.chr2A 3453530 38 + 111504155 CAGAATGCT-GAGGCTGTGCTCTGCCGAGGCTGGTAAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340302 38 + 114371477 CAGAATGCT-GAGGCTGTGCTCTGCCGAGGCTGGTAAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213910 38 + 637652 CAGAATGCT-GAGGCTGTGCTCTGCCGAGGCTCGTAAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013351 38 + 81552678 CAGAAGGCT-GAGGCTGTGCTCTGCCGAGGCTGGTAAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272161 37 + 108979918 CAGCAGGCT-GAGGCTGTGCTCTGCTGAGGCT-GTAAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985250 37 - 111193037 CAGCAGGCT-GAGGCTGTGCTCTGCTGAGGCT-GTAAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379711 37 + 3644372 CAGCAGGCT-GAGGCTGTGCTCTGCTGAGGCT-GTAAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3333003 37 - 10304083 CAGCAGGCT-GAGGCTGTGCTCTGCTGAGGCT-GTAAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416830 37 - 107702431 CAGCAGGCT-GAGGCTGTGCTCTGCCGAGGCT-GTAAAA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323274 37 - 13651311 CAGCAGGCT-GAGGCTGTGCTCTGCCCAGGCT-GTAAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407530 26 - 108792865 ------------GACTCTGCCCTGCCCAGGCT-GGCAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3071171 37 - 7082604 CAGAAGGCT-CAGGCTCTGCTCTGCCCGGGCT-GGCAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556939 37 + 5243153 CAGAAGGTT-CAGGCTTTGCTCTGCCCAGGCT-GGCAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890547 37 - 1938448 CAGAAGGCT-CAGGCTCTGCTCTGCCCAGGCT-GGCAAA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613561 37 - 159902609 CGAAAGGCT-GAGGCTATGCTCTGCCCAGGCT-GGCAAA i micMur3.chr8 C 0 I 1 s proCoq1.NW_012151163v1 924965 37 + 1238772 CAGAAGGCT-GAGGCTGTGCTCTGCGCAGGCT-GGTAAA i proCoq1.NW_012151163v1 I 248 I 998 s otoGar3.GL873658 2496496 17 + 5252280 ---------------------CTACCTAGCCT-GATAGA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2012840 38 + 64289059 CAGAAAACTGGAGGCCATGCCCTTTGGAGGCT-GGAGAA i canFam3.chr17 C 0 C 0 e mm10.chr12 91399074 2522 - 120129022 I e dasNov3.JH580157 514728 316 + 2232271 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=70818.000000 s hg38.chr2_KI270769v1_alt 16238 7 + 120616 ATAAACC s panTro5.chr2A 3453568 7 + 111504155 ATAAACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340340 7 + 114371477 ATAAACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213948 7 + 637652 ATAAACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013389 7 + 81552678 ATAAACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272198 7 + 108979918 ATAAACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985287 7 - 111193037 ATAAACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379748 7 + 3644372 ATAAACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3333040 7 - 10304083 ATAAACC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416867 7 - 107702431 ATAAACC i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323311 7 - 13651311 ATAAACC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407556 5 - 108792865 ATAA--C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3071208 7 - 7082604 ATAAACC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556976 7 + 5243153 ATAAACC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890584 7 - 1938448 ATAAACC i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2613599 5 - 159902609 --AAAAA i micMur3.chr8 I 1 I 1017 s otoGar3.GL873658 2496513 7 + 5252280 GTAAACA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2012878 7 + 64289059 ATAAACT i canFam3.chr17 C 0 C 0 e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e dasNov3.JH580157 514728 316 + 2232271 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=792513.000000 s hg38.chr2_KI270769v1_alt 16245 94 + 120616 ---------------------------------TCCAAACAC--GTGTGCTTGACATGTGTGGCCAAGGAAATGTCTACCGTGCCTCCAGTTGGAGGCTTGTACCAGGAGAAACACTAAAGAGGAGGGA s panTro5.chr2A 3453575 94 + 111504155 ---------------------------------TCCAAACAC--GTGTGCTTGACATGTGTGGCCAAGGAAATGTCTACCGTGCCTCCAGTTGGAGGCTTGTACCAGGAGAAACACTTAAGAGGAGGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340347 94 + 114371477 ---------------------------------TCCAAACAC--GTGTGCTTGACATGTGTGGCCAAGGAAATGTCTACCGTGCCTCCAGTTGGAGGCTTGTACCAGGAGAAACACTTAAGAGGAGGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 213955 94 + 637652 ---------------------------------TCCAAACAC--GTGTGCTTGACATGTGTGGCCAAGGAAATGTCTACCGTGCCTCCAGTTGGAGGCTTGTACCAGGAGAAACTCTAAAGAGGAGGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013396 94 + 81552678 ---------------------------------TCTGAACAC--GTGTGCTTGACACGTGTGGCCAAGGAAATGTCTACCGTGCCTCCAGTTGGAGGCTTGTACCAGGAGAAACACTAAAGAAGAGGGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272205 94 + 108979918 ---------------------------------TCCAAACAC--GTGTGCTTGACATGTGTGGCCAAGGAAATGTCTACTATGCCTCCAGTTGGAGGCTTTTACCAGGAGAAACACTAAAGAAGAGGGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985294 94 - 111193037 ---------------------------------TCCAAACAC--GTGTGCTTGACATGTGTGGCCAAGGAAATGTCTACCATGCCTCCAGTTGGAGGCTTTTACCAGGAGAAACACTAAAGAAGAGGGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379755 94 + 3644372 ---------------------------------TCCAAACAC--ATGTGCTTGACATGTGTGGCCAAGGAAATGTCTACCACGCCTCCAGTTGGAGGCTTTTACCAGGAGAAACACTAAAGAAGAGGGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3333047 94 - 10304083 ---------------------------------TCCGAACAC--ATGTGCTTGACATGTGTGGCCAAGGAAATGTCAACCATGCCTCCAGTTGGAGGCTTTTACCAGGAGAAACACTAAAGAAGAGGGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416874 94 - 107702431 ---------------------------------TCCGAACAT--GTGTGCTTGACATGTGTGGCCAAGGAAATGTCTACCATGCCTCCAGTTGGAGGCTTTTACCAGGAGAAACACTAAAGAAGAGGGA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323318 94 - 13651311 ---------------------------------TCTGAACAC--GTGTGCTTGACATGTGTGGCCAAGGAAATGTCTACCATGCCTCCAGCTGGAGACTTTTACCAGGAGAAACACTAAAGAAGAGGGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407561 94 - 108792865 ---------------------------------CCCGGACACCTATGTGCTTGAC--ATGTGGCCAAGGAAATGTCTACCGTACCTCCAGTGGGAGGCTTGCACCAGGAGACACACTGAAGAAGAGAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3071215 96 - 7082604 ---------------------------------CCCGAACACCTGTGTGCTTGACAGATGTGGCCAAAGAAGTGTCTACTGTACCTCCAGTGGGAGGCCTGCACCAGGAGACACACTAAAGAAGAGAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 556983 96 + 5243153 ---------------------------------CCCGAACACCTGTGTGCTTGACATATGTGGCCAAGGAAATGTCTACTGTACCTCCAGCGGGAGGCTTGCACCAGAAGACACGCTAAAGAAGAGAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890591 96 - 1938448 ---------------------------------CCCGAACACCTGTGTGCTTGACATATGTGGCCAAGGAAATGTCTACTGTACCTCCAGTGGGAGGCTTGCACTAGGAGACACGCTAAAGAAGAGAAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2496520 64 + 5252280 ---------------------------------CCACAACAC--ACTCGCTATACAT------------------------CACATCCA----GAGGCTCCTGCAAGA--AAGCACCGGGAAGGAGGGA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2012885 127 + 64289059 GCGGGCATGCGTacacacacacacacacacacacacacacac--GCCTGCTTGACATGCACTAATAGGGATGTGTCCCCAGACCTTCGACATGGATGCTCGGGTGAGGACAGACACTGGGAAAGGGTGA i canFam3.chr17 C 0 I 885 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e dasNov3.JH580157 514728 316 + 2232271 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=437072.000000 s hg38.chr2_KI270769v1_alt 16339 48 + 120616 AGCGGACAAGCCTATCACACTGGCAGC--ACCAGT--TAGTAA-----GGGTAGGCA s panTro5.chr2A 3453669 48 + 111504155 AGCGGACAAGCCTATCACACTGGCAGC--ACCAGT--TAGTAA-----GGGTAGGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340441 48 + 114371477 AGCGGACAAGCCTATCACACTGGCAGC--ACCAGT--TAGTAA-----GGGTAGGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214049 48 + 637652 AGCGGACAAGCCTATCACACTGGCAGC--ACCAGT--TAGTAA-----GGGTAGGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013490 48 + 81552678 AACGGACAAGCCTGTCACActggcagc--accagt--tggtaa-----gggtaggca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272299 48 + 108979918 AACCGACAAGCCTGTCACActggcagc--accaag--tggtaa-----gggtaggca i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985388 48 - 111193037 AACCGACAAGCCTGTCACACTGGCAGC--ACCAAG--TGGTAA-----GGGTAGGCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379849 48 + 3644372 AACCGACAAGCCTGTCACActggcagc--accaag--tggtaa-----gggtaggca i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3333141 48 - 10304083 AACCGACAAGCCTGTTACACTGGCAGC--ACCAAT--TGGTAA-----GGGTAGGCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3416968 48 - 107702431 AACCGACAAGCCTGTCACACTGGCAGC--ACCAGT--TGGTAA-----GGGTAGGCA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323412 48 - 13651311 AACCGACAAGCCTGTCACACTGGCAGC--ACCAGT--TGGTAA-----GGGTAGGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407655 48 - 108792865 AACTGACAAGCCTGTCACACTGGCAGC--ACCAGT--TGGTAA-----AGGTGGGCG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3071311 48 - 7082604 AACTGACAAGCCTGTCACACTGGCAGC--ACCAGT--TGGAAA-----AGGTGGGCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 557079 48 + 5243153 AACTGACAAGCCTGTCACACTGGCAGC--ACCAGT--TGGTAA-----AGGTGGGCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890687 48 - 1938448 AACTGACAAGCCTGTCACACCAGCAGC--ACCAGT--TGGTAA-----AGGTGGGCA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2496584 57 + 5252280 AGCAAACAAGCCCATCCGCCTGGCGGCTGaccggtggtggtagagcctgggtgggca i otoGar3.GL873658 C 0 I 32 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e canFam3.chr17 2013012 885 + 64289059 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e dasNov3.JH580157 514728 316 + 2232271 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=2890105.000000 s hg38.chr2_KI270769v1_alt 16387 361 + 120616 Gcacacattgttgattcgaacgtgaattgtcttgcagagcaatttaacaatagctaataaagctgggcgtggtggctcacacctgtaatcccagcactttgggaggccaaggtgggtggatcgtttgagcccaggagttcaagaccagcctgggcaacatggcaaaaccccgcctctactaaaagtacaaaaattagctgggtgtggtagcacacgcctgtagtcccagctacttgtggggctgaggcaggaggatcacctgagccttggaaggttgaggctgcagtaagccatgatcgggccacagcactcctgcctgggtgacacagtaaaaccttgtctc---aaaaaaa--atttaaaaaaa s panTro5.chr2A 3453717 361 + 111504155 Gcacacattgttgatgcgaacgtgaattgtcttgcagagcaatttaacaatagctaataaagctggccgtggtggctcacacctgtaatcccagcactttgggaggccaaggtgggtggatcgtttgagcccaggagttcaagaccagcctgggcaacatggcaaaactccgcctctactaaaagtacaaaaattagctgggcgtggtagcacacgcctgtagtcccagctacttgtggggctgaggcaggaggatcacctgagccttggaaggttgaggctgcagtaagccatgatcgggccacagcactcctgcctgggtgacacagtaaaaccttgtctc---aaaaaaa--tttttttaaaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340489 360 + 114371477 Gcacacattgttgatgcgaacgtgaattgtcttgcagagcaatttaacaatagctaataaagctgggcgtggtggctcacacctgtaatcccagcactttgggaggccaaggtgggtggatcgtttgagcccaggagttcaagaccagcctgggcaacatggcaaaactccgcctctactaaaagtacaaaaattagctgggcgtggtagcacacacctgtagtcccagctacttgtggggctgaggcaggaggatcacctgagccttggaaggttgaggctgcagtaagccatgatcgggccacagcactcctgcctgggtgacacagtaaaaccttgtctc---aaaaaaa---tttttaaaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214097 361 + 637652 Gcacacattgttgatgcgaacgtgaattgtcttgcagagcaatttaacaatagctaataaagctgggcgtggtgactcacacctgtaatcccagcactttgggaggccaaggtgggtggatcgtttgagcccaggagttcaagaccagcctgggcaacatggcaaaaccccgcctctactaaaagtacaaaaattagctgggcgtggtagcacacgcctgtagtcccagctacttgtggggctgaggcaggaggatcacctgagccttggaaggttgaggctgcagtaagtcatgatcgggccacagcactcctgcctgggtgacacagtaaaaccttgtctc---aaaaaaa--attaaaaaaaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013538 362 + 81552678 acacacattgttgatgcgaatgtgaattgtcttgcagagcaatttaacaatagctaataaagctgggcacggtggctcacacctgtaatcccagcactttgggaggccaaggagggtggatcatttgagcccaggagttcaagaccagcctgggcaacatggcaaaaccccgcctctactaaaagtacaaaaattagccgggcgtgttagcacacgcctatagtcccagctatttgtggggctgaggcaggaggatcacctgagccttggaaggtcgaggctgcagtaagccatgatcgggccactgcactcctgcctgggtgacagagtaaaaccttgtctc---aaaaaaa-aatttaaaaaaa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272347 359 + 108979918 ggacacattgctgatgggaacgtgaattgccttgcagagcaatttaacaatagctaataaggctgggcgcggtggctcacacctgtaatcccagcattttgggaggctgaggcaggtggatcgtttgagcccaggagttcaagaccagcctgggcagcatggcaaaaccccgtctctactaaaagtacaaaaattagccaggtgtggtagcacatgcctgtagtctcagctacttgtagggctgaggcaggaggatcccctgagccttggaaggtcgagggtgccgtaagccatgatcgagccactgcactcctgcctaggtgacagagtaaaaccctgtctc---aaaaaaaaaaatt----aaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985436 359 - 111193037 GGacacattgctgatgggaacgtgaattgccttgcagagcaatttaacaatagctaataaggctgggcgcggtggctcacacctgtaatcccagcattttgggaggctgaggcaggtggatcgtttgagcccaggagttcaagaccagcctgggcagcatggcaaaaccccgtctctactaaaagtacaaaaattagccaggtgtggtagcacatgcctgtagtctcagctacttgtagggctgaggcaggaggatcccctgagccttggaaggtcgagggtgccgtaagccatgatcgagccactgcactcctgcctgggtgacagagtaaaaccctgtctc---aaaaaaaaaaatt----aaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3379897 360 + 3644372 ggacacattgctgatgggaacgtgaattgccttgcagagcaatttaacaatagctaataaggctgggcgcggtggctcacacctgtaatcccagcattttgggaggctgaggcaggtggatcgtttgagcccaggagttcaagaccagcctgggcagcatggcaaaaccccgcctctactaaaagtacaaaaattagccaggtgtggtagcacatgcctgtagtctcagctacttgtagggctgaggcaggaggatcccctgagccttggaaggtcgagggtgccgtaagccatgatcgagccactgcactcctgcctgggtgacagagtaaaaccctgtctc---aaaaaaaaaaatt---aaaa i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3333189 362 - 10304083 GGacacattgctgatgggaacgtgaattgccttgcagagcaatttaacaatagctaataaggctgggcgcggtggctcacacctgtaatcccagcatttcgggaggctgaggcaggtggatcgtttgagcccaggagttcaagaccagcctgggcagcatggcaaaaccccgcctctagtaaaagtacaaaaattagccaggtgtggtagcacatgcctgtagtctcagctacttgtggggctgaggcaggaggatcccctgagccttggaaggtcgagggtgccgtaagccatgatcgagccactgcactcctgcctgggtgacagagtaaaaccctgtctc---aaaaaaaaaaatt-aaaaaa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3417016 363 - 107702431 Gcatacattgctgatgggaacgtgaattgtcttgcagagcaatttaacaatagctaataaggctgggcgcggtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcgtttgagcccaggagttcaagaccagcctgggcaacatggcaaaaccccacctctactaaaagtacaaaaattagccaggcgtggtagcacatgcctgtagtctcagctacttgtggggctgaggcaggaggatcccctgagccttggaaggtcgagggtgccgtaagccatgatcgagccactgcactcctgcctgggtgacagagtaaaacgctgtctc---aaaaaaaaaatttaaaaaaa i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323460 360 - 13651311 Gcacacattgcggatgggaacgtgaattgccttggagagcaatttaacaatagctaataaggctgggcgcggtggctcacacctgtaatcccagtactttgggaggccaaggcgggtggatcgtttgagcccaggagttcaagaccagcctgggcaacatggcaaaagcccgcctctactaaaagtacaaaaattagccaggcgtggtagcacatgcctgtagtttccgctacttgtggggctgaggcaggaggatcccctgagccttggaaggtcgagagtgccgtaagccatgatcgagccactgcactcctgcctgggtgacagagtaaaaccctgtctc---aaaaaaaaaaatt---ttta i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3407703 343 - 108792865 Gcacgcattgttgatgggaatgtgcattgccttgcggagcaatttaacaatagctaataaggctgggcgcagtagctcaca-ctataatcccagcactttgggaggctgaggtgggtggatcatttgagctcgtgagttcaagaccagcctgggcaacagggcaaaacctcatctct----aaaatacaaaaattagccaggcatggtagcatgcacctgtagtcccacttacttgggggcctgaggcagggggatcacctgagccttgggaggtcaaggctgcagtgagccacgatcgggc------------gtctggatgacagagtaaaaccatgactc------aaaaaaaaattaaacta i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3071359 346 - 7082604 Gcacgcagtgttgatgggaacgtgcattgccttgcagagcaatttaacaatagctaataaggctgggcgcagtggctcacacctataatcccagcactttgggaggctgaggtgggtgga-----tgagcttatgagttcaagaccagcttgggcaacagggcaaaacctcatctctactaaaaatacaaaaattagccaggcatggtagcatgcacctgtagtcccacctacttgggggcctgaggcagagggatcacctgaaccttgggaggtcaaggcttcagtgagccatgatcgggc------------atctgggtgacagagtaaaaccctgtctc---aaaaaaaaaaaattaaacta i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 557127 354 + 5243153 Gcacgcattgttgatgggaacgtgcattgccttgcagagcaatttaacaatagctaataagactgggcgcagtggatcacacctataatcccagcactttgggaggctgaagtgggtggattgtttgagcccatgagttcaagaccagcctgggcaacagggcaaaacctcatctctactaaaaatacaaaaattagccaggcgtggtagcatgcacctgtagtcccacctacttgtgggcctcaggcaggaggatcacctgagccttgggaggtcaaggctgcagtgagccatgatcgggc------------gcctgggtgacagagtaaaaccctgtctcaaaaaaaaaaaaaaattaaacta i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1890735 352 - 1938448 Gcacgcattgttgatgggaacgtgcattgccttgcagagcaatttaaaaatagctaataaggctggccgcagtggctcacacctacaatcccagcactttgggaggctgaggtgggtggatcatttgagctcctgaattcaaaaccagcctgggcaacagggcaaaacctcatctctactaaaaatacaaaaattagccaggcgcggtagcatgcacctgtagtcccacctacttgggggcctgaggcagggggatcacctgagccttgggaggtcaaggctgcagtgagccatgatcgggc------------atctgggtgacagagtaaaaccctgtctc--aaaaaaaaaaaaattaaacta i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e canFam3.chr17 2013012 885 + 64289059 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e dasNov3.JH580157 514728 316 + 2232271 I e otoGar3.GL873658 2496641 32 + 5252280 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=33352.000000 s hg38.chr2_KI270769v1_alt 16748 12 + 120616 a-ataataataac--- s panTro5.chr2A 3454078 12 + 111504155 a-ataataataac--- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340849 12 + 114371477 a-ataataataac--- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214458 12 + 637652 a-aaaataataat--- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013900 12 + 81552678 a-ataataataat--- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272706 12 + 108979918 a-aaaaaaaagtt--- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985795 12 - 111193037 a-aaaaaaaagtt--- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3380257 12 + 3644372 a-aaaaaaaagtt--- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3333551 12 - 10304083 a-gaaaaaaagtt--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3417379 12 - 107702431 a-aaaaaaaagtt--- i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323820 12 - 13651311 a-aaaaaaaagtt--- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3408046 12 - 108792865 g-agaaaaatact--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3071705 13 - 7082604 gaaaaaaaatgct--- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 557481 12 + 5243153 g-aaaaaaatgct--- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1891087 12 - 1938448 g-aaaaaaatgct--- i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 515044 12 + 2232271 ----gacaataattga i dasNov3.JH580157 I 316 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e canFam3.chr17 2013012 885 + 64289059 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e otoGar3.GL873658 2496641 32 + 5252280 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=3288.000000 s hg38.chr2_KI270769v1_alt 16760 2 + 120616 -aa s panTro5.chr2A 3454090 2 + 111504155 -aa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340861 2 + 114371477 -aa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214470 2 + 637652 -aa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013912 2 + 81552678 -aa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272718 2 + 108979918 -ga i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985807 2 - 111193037 -ga i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3380269 2 + 3644372 -ga i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3333563 2 - 10304083 -ga i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3417391 2 - 107702431 -ga i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323832 2 - 13651311 -ga i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3408058 2 - 108792865 -ag i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3071718 2 - 7082604 -ag i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 557493 2 + 5243153 -aa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1891099 2 - 1938448 -ag i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2496673 2 + 5252280 -aa i otoGar3.GL873658 I 32 C 0 s dasNov3.JH580157 515056 2 + 2232271 ca- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e canFam3.chr17 2013012 885 + 64289059 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=969264.000000 s hg38.chr2_KI270769v1_alt 16762 94 + 120616 taaagtacatgctttg-tataacttttgactcaacaatcccactttcaattatatactttagaaaaa--cttgtacatgtgtgtaaaaag-ac--at--tca s panTro5.chr2A 3454092 94 + 111504155 taaagtacatgctttg-tataacttttgactcaacaatcccactttcaattatatactttagaaaaa--cttgtacatgtgtgtaaaaag-ac--at--tca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340863 94 + 114371477 taaagtacatgctttg-tataacttttgactcaacaatcccactttcaattatatactttagaaaaa--cttgtacatgtgtgtaaaaag-ac--at--tca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214472 94 + 637652 taaagtacatgctttg-tataacttttgactcagcaatcccactttcaattatatactttagaaaaa--cttgtacatgtgtgtaaaaag-ac--at--tca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3013914 94 + 81552678 taaagtacatgctttg-tataacctttgactcaacaatcccactttcaattatatactttagaaaaa--cttgtacatgtgtgtaaaaag-ac--at--tcg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272720 94 + 108979918 taaagtacatgctttg-tataacctttgactcaacaatcccactttcaattatatactttagaaaaa--cttgtacatgtgtgtaaaaag-ac--at--tca i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985809 94 - 111193037 taaagtacatgctttg-tataacctttgactcaacaatcccactttcaattatatactttagaaaaa--cttgtacatgtgtgtaaaaag-ac--at--tca i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3380271 94 + 3644372 taaagtacatgctttg-tataacctttgactcaacaatcccactttcaattatatactttagaaaaa--cttgtacatgtgtgtaaaaag-ac--at--tca i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3333565 94 - 10304083 taaagtacatgctttg-tataacctttgactcaacaatcccactttcaattatatactttagaaaaa--cttgtacatgtgtgtaaaaag-ac--at--tca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3417393 92 - 107702431 taaagtacatgctttg-tataacctttgactcaacaatcccactttcaattatatactttagaaaaa--cttgtaca--tgtgtaaaaag-ac--at--tca i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323834 94 - 13651311 taaagcacatgctttg-tataacctttgactcaacaatcccactttcaattatatactttagaaaaa--cttgtacatgtgtgtaaaaag-ac--at--tca i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3408060 95 - 108792865 tgaagtacatgctttg-tataacctttgactcaacaatcccactttcaattatatactttagaaaaactcttgtgcgaacac-cacaaag-at--at--tca i calJac3.chr14 C 0 I 14238 s saiBol1.JH378218 3071720 98 - 7082604 tgcagtacatgctttgttataacctttgactcaacaatcccac-ttcaattatatactttagaataactcttgtacatgtgtgtaaaaag-ac--atagtca i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 557495 98 + 5243153 tgaagtacatgctttg-tataacctttgacacaacaatccaactttcagttatgtactctagaataactcttgtacatgtgtatgaaaag-ac--atattca i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1891101 98 - 1938448 tgaagtacatgctttg-tataacctttgactcaacaatcccactttcaattatatactttagaaaaactcttgtacatgtgtgtaaaaag-ac--atattca i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2496675 96 + 5252280 caaaataagtgc-ttg-tttaacctctggtctgatagtcccacttccagttacatacgttagagtacgtcttgttcatgtgtgtaaaaggcat--gt--tca i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2013897 98 + 64289059 TAGAACACCTGCTCtg-cgccaccctccacccagcatttccacctgcaattccatgctttagaaaaactcttgtactggtgcatgaaagg-actggt--tca i canFam3.chr17 I 885 C 0 s dasNov3.JH580157 515058 96 + 2232271 taaaata--tggggtg-tataacctttgagccagcaatttcacttccaattatatactttagaaaagttttcatacatgggtttatatag-ac--atgttct i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=577699.000000 s hg38.chr2_KI270769v1_alt 16856 77 + 120616 agaatgtttgctgctgtattacttatgttacttagccaaaaattctatt-aaaaa-------------------------------------------------------------------------tcttaatat---tcaatatccaaaag------ s panTro5.chr2A 3454186 77 + 111504155 agaatgtttgctgctgtattacttatgttacttagccaaaaattatatt-aaaaa-------------------------------------------------------------------------tcttaatat---tcaatatccaaaag------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3340957 77 + 114371477 agaatgtttgctgctgtattacttatgttacttagccaaaaattatatt-aaaaa-------------------------------------------------------------------------tcttaatat---tcaatatccaaaag------ i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214566 77 + 637652 agaatgtttgctgctgtattacttgtgttacttagccaaaaattctatt-aaaaa-------------------------------------------------------------------------tcttaatat---tcaatatccaaaag------ i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014008 77 + 81552678 agaatgtttgctactctattacttgtattacttagtcaaaaattctatt-aaaaa-------------------------------------------------------------------------ccttaatat---tcaATATCCAAAAG------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272814 77 + 108979918 agaatgtttgctgcagtattacttgtattacttagccaaacattttatt-aataa-------------------------------------------------------------------------ccttaatat---tcaatattcaaaag------ i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985903 77 - 111193037 agaatgtttgctgcagtattacttgtattacttagccaaacattttatt-aataa-------------------------------------------------------------------------ccttaatat---tcaatattcaaaag------ i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3380365 77 + 3644372 agaatgtttgctgcagtattacttgtattacttagccaaacattttatt-aataa-------------------------------------------------------------------------ccttaatat---tcaatattcaaaag------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3333659 73 - 10304083 agaatgtttgctgcagtattacttgta----ttagccaaacattttatt-aataa-------------------------------------------------------------------------ccttaatat---tcaatattcaaaag------ i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3417485 73 - 107702431 agaatgtttgctgcagtattacttgta----ttagccaaacattttatt-aataa-------------------------------------------------------------------------ccttaatat---tcaatattcaaaag------ i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3323928 77 - 13651311 agaatgtttgctgcagtattacttgtattacttagccaaacattttatt-aaaaa-------------------------------------------------------------------------ccttaatat---tcaatattcaaaag------ i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3071818 77 - 7082604 agaatgttggctgccatattactagtattaattcagcaaacattttatt-taaaa-------------------------------------------------------------------------ccttaatat---tcagtagccaaaag------ i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 557593 77 + 5243153 agaatgtttgctgccatattactagtattaattcggcaaaaattttatt-taaaa-------------------------------------------------------------------------tcttaatat---tcaatagccaaaag------ i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1891199 77 - 1938448 agaatgtttgctgccatattactagtattaattcggcaaaaattttatt-taaaa-------------------------------------------------------------------------gcttaatat---tcagtagccaaaag------ i aotNan1.NW_018507213v1 C 0 I 307 s otoGar3.GL873658 2496771 78 + 5252280 agaatatctgttgccatattatttgta----ttgaccaaaaatttaatt-taaaaa--------------------------------------------------------------------ccttacttaatac---gtaacaataagaaa------ i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2013995 70 + 64289059 ----tgtttgttgctgtattgtttgca----ttagccaaaaattttattggaaaa-------------------------------------------------------------------------ccttagtgt---tgagcaagaaaaaa------ i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 515154 155 + 2232271 agaatgtttgttgcagtattatttgta----ttagtcaaattttttatt-tgaaagagaagaggaaattattttatgtatagtcaattaaatattgagcagttaaagtaaatgaactggagctccattccttaatatggataaatttcaaaatgttgaac i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=9090.000000 s hg38.chr2_KI270769v1_alt 16933 1 + 120616 a s panTro5.chr2A 3454263 1 + 111504155 a i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341034 1 + 114371477 a i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214643 1 + 637652 a i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014085 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272891 1 + 108979918 a i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4985980 1 - 111193037 a i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3380442 1 + 3644372 a i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3333732 1 - 10304083 a i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3417558 1 - 107702431 a i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3324005 1 - 13651311 a i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3071895 1 - 7082604 a i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 557670 1 + 5243153 a i cebCap1.NW_016107454v1 C 0 I 305 s otoGar3.GL873658 2496849 1 + 5252280 g i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014065 1 + 64289059 a i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 515309 1 + 2232271 a i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e aotNan1.NW_018507213v1 1891276 307 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=85299.000000 s hg38.chr2_KI270769v1_alt 16934 18 + 120616 ---------------agagaattatgttatatg-------------------------- s panTro5.chr2A 3454264 18 + 111504155 ---------------agagaattatgctatatg-------------------------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341035 18 + 114371477 ---------------agagaattatgctatatg-------------------------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214644 18 + 637652 ---------------agagaattatgttatatg-------------------------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014086 18 + 81552678 ---------------AGAGAATTACGTTATATG-------------------------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3272892 18 + 108979918 ---------------agagaattatgttctatg-------------------------- i rheMac8.chr13 C 0 I 350 s macFas5.chr13 4985981 18 - 111193037 ---------------agagaattatgttctatg-------------------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3380443 18 + 3644372 ---------------agagaattatgttctatg-------------------------- i macNem1.NW_012011978v1 C 0 I 299 s cerAty1.NW_012000820v1 3333733 18 - 10304083 ---------------agagaattatgttctatg-------------------------- i cerAty1.NW_012000820v1 C 0 I 402 s chlSab2.chr14 3417559 18 - 107702431 ---------------agagaattatgttctatg-------------------------- i chlSab2.chr14 C 0 I 401 s colAng1.NW_012118821v1 3324006 18 - 13651311 ---------------agagaattatgttctatg-------------------------- i colAng1.NW_012118821v1 C 0 I 542 s saiBol1.JH378218 3071896 14 - 7082604 -------------------gaatacattatatg-------------------------- i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2496850 18 + 5252280 ---------------agaaagttatgttagata-------------------------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014067 18 + 64289059 ---------------aaaaagttatgttacata-------------------------- i canFam3.chr17 I 1 I 20 s dasNov3.JH580157 515310 59 + 2232271 gtaaaagcatgttgcaaaaggctaccttcagtgtgttagcttttTTTCATGTTTGAATA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e cebCap1.NW_016107454v1 557671 305 + 5243153 I e aotNan1.NW_018507213v1 1891276 307 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=-3964.000000 s hg38.chr2_KI270769v1_alt 16952 7 + 120616 ------------------------------------------------------caGTTGA- s panTro5.chr2A 3454282 7 + 111504155 ------------------------------------------------------caGTTGA- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341053 7 + 114371477 ------------------------------------------------------caGTTGA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214662 7 + 637652 ------------------------------------------------------caGTTGA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014104 7 + 81552678 ------------------------------------------------------CAGTTGA- i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 4985999 7 - 111193037 ------------------------------------------------------taatcaa- i macFas5.chr13 C 0 C 0 s saiBol1.JH378218 3071910 7 - 7082604 ------------------------------------------------------caatcga- i saiBol1.JH378218 C 0 I 193 s otoGar3.GL873658 2496868 7 + 5252280 ------------------------------------------------------atatcaa- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014105 7 + 64289059 ------------------------------------------------------cagttga- i canFam3.chr17 I 20 I 179 s dasNov3.JH580157 515369 62 + 2232271 caggtctctagttccttagccacaattctgaaatccaagaaagccgtgaaaactaagtttAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e cebCap1.NW_016107454v1 557671 305 + 5243153 I e aotNan1.NW_018507213v1 1891276 307 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I e colAng1.NW_012118821v1 3324024 542 - 13651311 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T e chlSab2.chr14 3417577 401 - 107702431 I e cerAty1.NW_012000820v1 3333751 402 - 10304083 I e macNem1.NW_012011978v1 3380461 299 + 3644372 I e rheMac8.chr13 3272910 350 + 108979918 I a score=4095.000000 s hg38.chr2_KI270769v1_alt 16959 1 + 120616 T s panTro5.chr2A 3454289 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341060 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214669 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014111 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 4986006 1 - 111193037 t i macFas5.chr13 C 0 I 336 s saiBol1.JH378218 3072110 1 - 7082604 T i saiBol1.JH378218 I 193 C 0 s otoGar3.GL873658 2496875 1 + 5252280 t i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014291 1 + 64289059 T i canFam3.chr17 I 179 C 0 s dasNov3.JH580157 515431 1 + 2232271 T i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e cebCap1.NW_016107454v1 557671 305 + 5243153 I e aotNan1.NW_018507213v1 1891276 307 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I e colAng1.NW_012118821v1 3324024 542 - 13651311 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T e chlSab2.chr14 3417577 401 - 107702431 I e cerAty1.NW_012000820v1 3333751 402 - 10304083 I e macNem1.NW_012011978v1 3380461 299 + 3644372 I e rheMac8.chr13 3272910 350 + 108979918 I a score=33658.000000 s hg38.chr2_KI270769v1_alt 16960 21 + 120616 CGGGCAGCACAGTGCGACCTG s panTro5.chr2A 3454290 21 + 111504155 CGGGCAACACAGTGTGACCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341061 21 + 114371477 CGGGCAACACAGTGTGACCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214670 21 + 637652 CGGGCAGCACAGTGTGACCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014112 21 + 81552678 CGGGCAGCACAGTGTGACCTG i nomLeu3.chr19 C 0 C 0 s saiBol1.JH378218 3072111 21 - 7082604 TGGGCAGCACAATCCGACCTG i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2496876 21 + 5252280 taagtactttagagcaattga i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014292 21 + 64289059 TTGGCAGCAAAATCTGACCTG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 515432 21 + 2232271 TTGGTGGCAAAATCTGATTTC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e cebCap1.NW_016107454v1 557671 305 + 5243153 I e aotNan1.NW_018507213v1 1891276 307 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I e colAng1.NW_012118821v1 3324024 542 - 13651311 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T e chlSab2.chr14 3417577 401 - 107702431 I e cerAty1.NW_012000820v1 3333751 402 - 10304083 I e macNem1.NW_012011978v1 3380461 299 + 3644372 I e macFas5.chr13 4986007 336 - 111193037 I e rheMac8.chr13 3272910 350 + 108979918 I a score=14935.000000 s hg38.chr2_KI270769v1_alt 16981 6 + 120616 ACCAAG s panTro5.chr2A 3454311 6 + 111504155 ACCAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341082 6 + 114371477 ACCAAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214691 6 + 637652 ACCAAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014133 6 + 81552678 ACCAAA i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 4986343 6 - 111193037 ACCAGA i macFas5.chr13 I 336 C 0 s saiBol1.JH378218 3072132 6 - 7082604 ACCAGA i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2496897 6 + 5252280 aataaa i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014313 6 + 64289059 ACCAGG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 515453 6 + 2232271 ACCCAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e cebCap1.NW_016107454v1 557671 305 + 5243153 I e aotNan1.NW_018507213v1 1891276 307 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I e colAng1.NW_012118821v1 3324024 542 - 13651311 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T e chlSab2.chr14 3417577 401 - 107702431 I e cerAty1.NW_012000820v1 3333751 402 - 10304083 I e macNem1.NW_012011978v1 3380461 299 + 3644372 I e rheMac8.chr13 3272910 350 + 108979918 I a score=194987.000000 s hg38.chr2_KI270769v1_alt 16987 52 + 120616 CTCACTCTGTG-CCGCCCTGGAT--ATCCCACACGTGCACCTG-------TTCCCACACACG s panTro5.chr2A 3454317 52 + 111504155 CTCACTCTGTG-CCGCCCTGGAT--GTCCCACACGTGCACCTG-------TTCCCACACACG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341088 52 + 114371477 CTCACTCCGTG-CCACCCTGGAT--GTCCCACACGTGCACCTG-------TTCCCACACACG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214697 52 + 637652 CTCACTCTGTG-CCGCCCTGGAT--GTCCCACACGTGCACCTG-------TTCCCATACACG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014139 52 + 81552678 CTCACTCGGTG-CCACCCTGGAC--ATCCCGCACGTGCACCTG-------TTCCCACACACG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3273260 50 + 108979918 CTCACTCGGTG-CCACCCTGGA----TCCCGCACGTGCACTGG-------TTCCCATACACG i rheMac8.chr13 I 350 I 1 s macFas5.chr13 4986349 50 - 111193037 CTCACTCGGTG-CCACCCTGGA----TCCCGCACGTGCACTGG-------TTCCCATACACG i macFas5.chr13 C 0 I 1 s macNem1.NW_012011978v1 3380760 50 + 3644372 CTCACTCGGTG-CCACCCTGGA----TCCCGCACGTGCACTGG-------TTCCCATACACG i macNem1.NW_012011978v1 I 299 I 1 s cerAty1.NW_012000820v1 3334153 50 - 10304083 CTCACTCGGTG-CCACCCTGGA----TCCCGCACGTGCACTGG-------TTCCCATACACG i cerAty1.NW_012000820v1 I 402 I 1 s chlSab2.chr14 3417978 50 - 107702431 CTCACTCGGTG-CCACCCTGGA----TCCCGCACGTGCACTGG-------TTCCCATACACG i chlSab2.chr14 I 401 I 1 s colAng1.NW_012118821v1 3324566 50 - 13651311 CTCACTCGGTG-CCACCCTGGA----TCCCGCACGTGCACCGG-------TTCCCATACACG i colAng1.NW_012118821v1 I 542 I 1 s saiBol1.JH378218 3072138 52 - 7082604 CTCACTTGGTG-CCACCCTGAGT--ATCGGGCACATGACCCTG-------TTTCCACACTCG i saiBol1.JH378218 C 0 I 1 s otoGar3.GL873658 2496903 32 + 5252280 ---------------------------ttaacacattcatcagcatcagatttccaaac--- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014319 25 + 64289059 CTCATTTGGTG-CCTACC--------TCCTATCC---------------------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 515459 44 + 2232271 CTCATTTGATGACCACCCTCCATAAGTCCCAC-----CTTTTa-------ttctcc------ i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e cebCap1.NW_016107454v1 557671 305 + 5243153 I e aotNan1.NW_018507213v1 1891276 307 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I e manLeu1.NW_012104432v1 959682 18387 + 1565135 T a score=236332.000000 s hg38.chr2_KI270769v1_alt 17039 60 + 120616 CTCCTTTCCTGCCCTG-----------CGCGGCCCGCTGCGG----CACAGAGCTATG-------TGCACCGTGGCTCC-----------------------------------------TGA s panTro5.chr2A 3454369 60 + 111504155 CTCCTTTCCTGCCCTG-----------CGCGGCCCGCTGCGG----CACAGAGCTCTG-------TGCACCGTGGCTCC-----------------------------------------TGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341140 60 + 114371477 CTCCTTTCCTGCCCTG-----------CGCGGCCCGCTGCGG----CACAGAGCTCTG-------TGCACCGTGGCTCC-----------------------------------------TGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214749 60 + 637652 CTCCTTTCCTGCCCTG-----------CGCGGCCCACTGCAG----CACAGAGCTCTG-------TGCACCATGGCTCC-----------------------------------------TGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014191 58 + 81552678 CTCCTTTCCTGCCCTG-----------CGCAGCCTGCTGCAG----CACAGAGCTC---------TGCACCATGGCTTC-----------------------------------------TGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3273311 60 + 108979918 CACCTTTCCTGCCCTG-----------CGTGGCCCGCTGCAG----CACAGAGCTCTG-------TGCACCGTGGCTCC-----------------------------------------TGA i rheMac8.chr13 I 1 C 0 s macFas5.chr13 4986400 60 - 111193037 CACCTTTCCTGCCCTG-----------CGTGGTCCGCTGCAG----CACAGAGCTCTG-------TGCACCGTGGCTCC-----------------------------------------TGA i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3380811 60 + 3644372 CACCTTTCCTGCCCTG-----------CGTGGCCCGCTGCAG----CACAGAGCTCTG-------TGCACCGTGGCTCC-----------------------------------------TGA i macNem1.NW_012011978v1 I 1 C 0 s cerAty1.NW_012000820v1 3334204 60 - 10304083 CACCTTTCCTGCCCTG-----------CGTGGCCCGCTGCTG----CACAGAGCTCTG-------TGCACCGTGGCTCC-----------------------------------------TGA i cerAty1.NW_012000820v1 I 1 C 0 s chlSab2.chr14 3418029 60 - 107702431 CTCCTTTCCTGCCCTG-----------CGTGGCCCGCTGCAG----CACAGAGCTCTG-------TGCACCGTGGCTCC-----------------------------------------TGA i chlSab2.chr14 I 1 C 0 s manLeu1.NW_012104432v1 941295 60 + 1565135 CTCCTTTCCTGCCCTG-----------CATGGCCCGCTGCAG----CACAGAGCTCTG-------TGCACTGTGGCTCC-----------------------------------------TGA i manLeu1.NW_012104432v1 T 18387 C 0 s colAng1.NW_012118821v1 3324617 60 - 13651311 CTCCTTTCCTGCCCTG-----------CGTGGCCCGCTGCAG----CACAGAGCTCTG-------TGCGCCGTGGCTCC-----------------------------------------TGA i colAng1.NW_012118821v1 I 1 C 0 s saiBol1.JH378218 3072191 11 - 7082604 CTCTGTTCCTG---------------------------------------------------------------------------------------------------------------- i saiBol1.JH378218 I 1 C 0 s otoGar3.GL873658 2496935 24 + 5252280 caGTGTTTGGGCCC--------------------------------CACAG--------------------GTGGA----------------------------------------------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014344 43 + 64289059 -------CCCACCCTG-----------CACCCTGCTCTCCAG----GGAAGAG---TA-------AGCACGGGGA------------------------------------------------ i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 515503 123 + 2232271 tcccttccctgccctgctctgtgcacacacggctggttctagggactacatctccccggctcagttgccctcttgctcccattttggttaacctagtgggcggcaggtggttacaggtggtga i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e cebCap1.NW_016107454v1 557671 305 + 5243153 I e aotNan1.NW_018507213v1 1891276 307 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=-2400.000000 s hg38.chr2_KI270769v1_alt 17099 1 + 120616 G s panTro5.chr2A 3454429 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341200 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214809 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014249 1 + 81552678 C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3273371 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4986460 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3380871 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3334264 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418089 1 - 107702431 C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 941355 1 + 1565135 C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3324677 1 - 13651311 C i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 557976 1 + 5243153 G i cebCap1.NW_016107454v1 I 305 C 0 s otoGar3.GL873658 2496959 1 + 5252280 G i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014387 1 + 64289059 G i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 515626 1 + 2232271 g i dasNov3.JH580157 C 0 I 4 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e saiBol1.JH378218 3072202 0 - 7082604 C e proCoq1.NW_012151163v1 925002 998 + 1238772 I e aotNan1.NW_018507213v1 1891276 307 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=2469120.000000 s hg38.chr2_KI270769v1_alt 17100 278 + 120616 CCCTGCCCGGCCAGGGGCAGTCTCCTGGCGGCTGTGATCCTCTTCCTGAGG------------------------------CTGCCACAGCTGTCT----TGCAGCCCA---------------GTCCCCTCTGGTG----------------------------CCATGCCCTGGGCACGTCACTGTC------------------CCTTGCTCAC---AACTTTGCA-AAAA--GT-------TAAGACTCTCTTCAGAAACTCCTGTGACCATGCAGTAGCCATCATGTCCTGCCAGGCCCCCGACAAAGGATATGA--TAGCAAAGCCTGACCTCAG-CGAGGAGAGACAGTTATGGTCTCAGTTCATCTCCTTTGGTGTGAACA s panTro5.chr2A 3454430 278 + 111504155 CCCTGCCCGGCCAGGGGCAGTCTCCTGGCGGCTGTGATCCTCTTGCTGAGG------------------------------CTGCCACAGCTGTCT----TGCAGCCCA---------------GTCTCCTCTGGTG----------------------------CCATGCCCTGGGCACATCACTGTC------------------CCCTGCTCAC---AACTTTGCA-AAAA--GT-------TAAGACTCTCTTCAGAAACTCCTGTGACCATGCAGTAGCCATCATGTCCTGCCAGGCCCCCGACAAAGGATATGA--TAGCAAAGCCTGGCCTCAG-CGAGGAGAGACAGTTACGGTCTCAGTTGATCTCCTTTGGTGTGAACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341201 278 + 114371477 CCCTGCCCGGCCAGGGGCAGTCTCCTGGCGGCTGTGATCCTCTTGCTGAGG------------------------------CTGCCACAGCTGTCT----TGCAGCCCA---------------GTCCCCTCTGGTG----------------------------CCATGCCCTGGGCACATCACTGTC------------------CCTTGCTCAC---AACTTTGCA-AAAA--GT-------TAAGACTCTCTTCAGAAACTCCTGTGACCATGCAGTAGCCATCATGTCCTGCCAGGCCCCCGACAAAGGATATGA--TAGCAAAGCCTGACCTCAG-CGAGGAGAGACAGTTATGGTCTCAGTTGATCTCCTTTGGTGTGAACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 214810 278 + 637652 CCCTGCCCGGCCAGGGGCAGTCTCCTGGCGGCTGTGATCCTCTTCCTGAGG------------------------------CTGCCACAGCTGTCC----TGCAGCCCA---------------GTCCCCTCTGGTG----------------------------CCATGCCCTGGGCACATCACTGTC------------------CCTTGCTCAC---AACTTTGCA-AAAA--GT-------TAAGACTCTCTTCAGAAACTCCTGTGACCATGCAGTAGCCATCATGTCCTGCCAGGCCCCCGACAAAGGATATGA--TAGCAAAGCCTGACCTCAG-CGAGGAGAGACAGTTATGGTCTCAGTTGATCTCCTTTGGTGTGAACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014250 285 + 81552678 CCCTGTCCAGCCAGGAGCAGTCTCCTGGCAGCTGTGATCCTCTTCCTGAGG------------------------------CTGCCACAGCTGTCC----TGCAGCCCA---------------GTCCCCTCTGGCG----------------------------CCATGCCCTCGGCACATCACTGTC------------------ccttgcccac---aactttgca-aaaa--gttccttcctaagactctcatcagaaactcctgtgaccatgcattagccatgatgtcctgccaggcccccgacAAAGGATATGA--TAGCAAAGCCTGACCTCAG-TGAAGAGAGACAGTTATGGTCTCAGTTGATCTCCTTTGGTGTGAACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3273372 284 + 108979918 CCCTGCCCGGCCGGGGGCAGTCTCCTGGCGACTGTGATCCTCTTCCTGAGG------------------------------CCGCCACAGCTGTCC----TGCAGCCCA---------------GTCTCCTCTGGCG----------------------------CCACACCCTGGGCACATCACTGTC------------------CCTTGCTCAC---AACTTTGCAAAAAA--GTTCCTTCCTAAGACTCTCTTCAGAAACTC--GTGACCATGCAGTAGCCATCATGTCCTGCCAGGCCCCCGACAAAGGATATGA--TAGCAAAGCCTCACCACAG-TGAGGAGAGCCAGTTATGGTCTCAGTTGATCTCCTTTGGTGTGAACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4986461 284 - 111193037 CCCTGCCCGGCCGGGGGCAGTCTCCTGGCGACTGTGATCCTCTTCCTGAGG------------------------------CCGCCACAGCTGTCC----TGCAGCCCA---------------GTCCCCTCTGGCG----------------------------CCACACCCTGGGCACATCACTGTC------------------CCTTGCTCAC---AACTTTGCAAAAAA--GTTCCTTCCTAAGACTCTCTTCAGAAACTC--GTGACCATGCAGTAGCCATCATGTCCTGCCAGGCCCCCGACAAAGGATATGA--TAGCAAAGCCTCACCACAG-TGAGGAGAGCCAGTTATGGTCTCAGTTGATCTCCTTTGGTGTGAACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3380872 284 + 3644372 CCCTGCCCGGCCGGGGGCAGTCTCCTGGCGACTGTGATCCTCTTCCTGAGG------------------------------CCGCCACAGCTGTCC----TGCAGCCCA---------------GTCCCCTCTGGCG----------------------------CCACACCCTGGGCACATCACTGTC------------------CCTTGCTCAC---AACTTTGCAAAAAA--GTTCCTTCCTAAGACTCTCTTCAGAAACTC--GTGACCATGCAGTAGCCATCATGTCCTGCCAGGCCCCCGACAAAGGATATGA--TAGCAAAGCCTCACCACAG-TGAGGAGAGCCAGTTATGGTCTCAGTTGATCTCCTTTGGTGTGAACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3334265 284 - 10304083 CCCTGCCCGGCCGGGGGCAGTCTCCTGGCGACTGTGATCCTCTTCCTGAGG------------------------------CCGCCACAGCTGTCC----TGCAGCCCA---------------GTCCCCTCTGGCG----------------------------CCACACCCTGGGCACATCACTGTC------------------CCTTGCTCAC---AACTTTGCAAAAAA--GTTCCTTCCTAAGACTCTCTTCAGAAACTC--GTGACCATGCAGTAGCCATCATGTCCTGCCAGGCCCCCGACAAAGGATATGA--TAGCAAAGCCTCACCACAG-TGAGGAGAGCCAGTTATGGTCTCAGTTGATCTCCTTTGGTGTGAACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418090 286 - 107702431 CCCTGCCCGGCCAGGGGCAGTCTCCTGGCGACTGTGATCCTCTTCCTGAGG------------------------------CCGCCACAGCTGTCC----TGCAGCCCA---------------ATCCCCTCTGGCT----------------------------CCACACCCTGAGCACATCACTGTC------------------CCTTGCTCAC---AACTTTGCAGAAAA--GTTCCTTCCTAAGACTCTCTTCAGAAACTCCTGTGACCATGCAGTAGCCGTCATGTCCTGCCAGGCCCCCGACAAAGGATATGA--TAGCAAAGCCTCACCGCAG-TGAGGAGAGCCAGTTATGGTCTCCGTTGATCTCCTTTGGTGTGAACC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 941356 284 + 1565135 CCCTGCCCGGCCGGGGGCAGTCTCCTGGCGACTGTGATCCTCTTCCTGAGG------------------------------CCGCCACAGCTGTCC----TGCAGCCCA---------------GTCCCCTCTGGCG----------------------------CCACACCCTGGGCACATCACTGTC------------------CCTTGCTCAC---AACTTTGTAAAAAA--GTTCCTTCCTAAGACTCTCTTCAGAAACTC--GTGACCATGCAGTAGCCATCATGTCCTGCCAGGCCCCCGACAAAGGATATGA--TAGCAAAGCCTCACCACAG-TGAGGAGAGCCAGTTATGGTCTCAGTTGATCTCCTTTGGTGTGAACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3324678 279 - 13651311 CCCTGCCCGGC------CAGTCTCCTGGCGACTGTGATCCTCTTCCTGAGG------------------------------CCGCCACAGCCGTCC----TGCAGCCCA---------------TTCCTCTCTGGCG----------------------------CCACACCCTGGGCACATCACTGTC------------------ccttgctcac---aactttgcaaaaaa--gttccttcctaagactctcttcagaaactcctgtggccattcagt-gccatcatgtcctgccaggcccccgacAAAGGATATGA--TAGCCAAGCCTCACCGCAG-TGAGGAGAGCCAGTCATGGTCTCAGTTGATCTCCTTTGGTGTGAACA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3072202 316 - 7082604 CCCTGCCCGGCCAGGGGCAGCCTCCAGGTGGCTGTGTTCCTCTTCCTGAGG------------------------------CTGCCACTGCTGTCC----TGCAGCCCA---------------GTCCCTTCTGCTGCAGGCCGGCTAAGGGCCTCCCTCTGTCACCAAGTCCTGGGAACATTGCTGTC------------------CCTTGCTTAC---AACTTTGCAAAAAAAGTTTTTTTCCTAAGACTCTCTTCAGAAACTCCTGTGACCACGAAGTAGCCATCATGTCCTGGCAGGCCTCCGACAAAGGCTGTGA--TAGCAAAGCCTCACCTCAG-TGAGGAGAGACAGTTACAGTCTCAGCCGATCTCTTTGGGCGTGAACA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 557977 314 + 5243153 CCCTGCCCGGCCAGGAGCAGCCTCCAGGTGGCTGTGTTCCTCTTCCTGAGG------------------------------CTGCCACTGCTGTCC----TGCAGCCCA---------------GTCCCTTCTGCTGCAGGCCGGCTAAGGGCCTCCCTCTGTCACCAAGCCCTGGGAACATCGCTGTC------------------CCTTGCTCAC---AACTTTGCAAAAAAAAGTTTCTTCCTAAGA--CTCTTCAGAAACTCCTGTGACCACGCAGTAGCCATCATGTCCTGGCAGGCCCCCAGCAAAGGCCGTAA--TAGCAAAGCCTCACCTCGG-TGAGGAGAGACAGTTATGGTCTCAGCCGATCTCCTTGGGCATGAACA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1891583 314 - 1938448 CCCTGCCCGGCCAGGGGCAGCCTCCTGGTGGCTGTGTTCCTCTTCCTGAGG------------------------------CTGCCACTACTGTCC----TGCAGCCCA---------------GTCCCTTCTGGTGCAGGCCGGCTAAGGGCCTCCCTCTGTCACCAAGCCCTGGGAACATCGCTGTC------------------CCTTGCTCAC---AACTTTGCAAAAAA--GTTTCTTCCTAAGACTCTCTTCAGAAACTCCTGTGACCACACAGTAGCCGTCATGTCCTGGCAGGCCCCTGACAAAGGCTGTGA--TAGCAAAGCCTCACCTCAG-TGAGGAGAGACAGTTATGGTCTCAGCCGATCTCCGTGGGCGTGAACA i aotNan1.NW_018507213v1 I 307 C 0 s otoGar3.GL873658 2496960 213 + 5252280 ACCTGCGCAG---------------------------------------GG------------------------------CC-------------------------------------------TCCCTCTG-TG----------------------------CTAGTCCCTGGGCCC--TGCT-TC------------------CCTTGTTCAG---ACCTCTGTA---GA--GTTTCTTCATGAGACTCTTTTCAGGAAACCCCATGGCTGTGAAGTGGCCCCTGTGTCCAGCCAGGGCCCTG---AAGGATGAGATCTGGCACAGCCTGACCTC---TGAAGGAGACAAGTTATGGTGTTAGGTGATCCCCTTTGTTGTAAGCA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014389 230 + 64289059 TCCCTCCAGGT--GGGGCAGCCCCTT------------------------G------------------------------TGGCCTCAGCTCCCC----TGCAGGCCC---------------GTCTCCTC---------------------------------CTA---CCTGGGCGTCTCTCCATCCCTTCTTGGACCTCCTGGCCTTGCCCAC---ACCTGTGCA-GGTA--GCCCCTCTCCAAA---CTCTTTGGGAAGCTCTGGGAGCCGTCAGGGGCGTCCCATTGCTGCCAGGCTCC------------TGG--TGGAGAAG-----------------------AGTCGTGCTCTTCGTTGGT--CCTGCAGTGTCAACA i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 515631 380 + 2232271 ccctctctgccccatggtagtttcttcacagcccagattctctccctaaaggctttgactcctcttaggcgaacttcccaacagcgacagccctcctcagtgccgctcacaggactcctcccttgcacctttaggtgtcggggcgctatggtcttccccctttggctaatctctgtgtacaccagtatccctaattggttctctgaaccttacttactgaacttttgca-agca--gtcccttcattaaactgctttcagtagcccctttgcatattcagtaacccttgctccctgctgaaccct----gaTGGGCAtga--tggcaaaacctggcctcaattgatgagaaacagttacagtctttattgactccattttgtatgaGCA i dasNov3.JH580157 I 4 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 925002 998 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=214575.000000 s hg38.chr2_KI270769v1_alt 17378 18 + 120616 AAAATATTCCTGTGCCTA s panTro5.chr2A 3454708 18 + 111504155 AAAATATTCCTGTGCCTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341479 18 + 114371477 AAAATATTCCTGTGCCTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215088 18 + 637652 AAAATATTACTGTGCCTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014535 18 + 81552678 AAAATATTCCTGTGCCTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3273656 18 + 108979918 AAAATATTCCTGTGCCTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4986745 18 - 111193037 AAAATATTCCTGTGCCTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381156 18 + 3644372 AAAATATTCCTGTGCCTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3334549 18 - 10304083 AAAATATTCCTGTGCCTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418376 18 - 107702431 AAAATATTCCTGTGCCTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 941640 18 + 1565135 AAAATATTCCTGTGCCTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3324957 18 - 13651311 AAAATATTCCTGTGCCTA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3072518 18 - 7082604 AAAATATTCTTGTGCCTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 558291 18 + 5243153 AAAATATTCTTGTGCCTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1891897 18 - 1938448 AAAATATTCTTGTGCCTA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 926000 18 + 1238772 AAAGTATTCCTGTGCCTG i proCoq1.NW_012151163v1 I 998 C 0 s otoGar3.GL873658 2497173 12 + 5252280 AAAGTGTT------CCTG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014619 16 + 64289059 AAAATATCCCAG--CCTG i canFam3.chr17 C 0 I 218 s dasNov3.JH580157 516011 18 + 2232271 AAACTAGTCCTATATCTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e calJac3.chr14 3408155 14238 - 108792865 I a score=488399.000000 s hg38.chr2_KI270769v1_alt 17396 45 + 120616 GAAATGTTTTTGAAATA-CAAAGTAAACT---GGAACTAT----------AGACAAATA s panTro5.chr2A 3454726 45 + 111504155 GAAATGTTTTTGAAATA-CAAAGTAAACG---GGAACTAT----------AGACAAATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341497 45 + 114371477 GAAATGTTTTTGAAATA-CAAAGTAAACG---GGAACTAT----------AGACAAATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215106 45 + 637652 GAAATGTTTTTGAAATA-CAAAGTAAACT---TGAACCAT----------AGACAAATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014553 45 + 81552678 GAAATGTTTTTGAAATA-CAAAGTAAACT---TGAACTAT----------AGCCAAATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3273674 45 + 108979918 GAAATGTTTTTGAAATG-CGAAGTAAACT---TGAACTAT----------AGCCAAATA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4986763 45 - 111193037 GAAATGTTTTTGAAATG-CGAAGTAAACT---TGAACTAT----------AGCCAAATA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381174 45 + 3644372 GAAATGTTTTTGAAATG-CAAAGTAAACT---TGAACTAT----------AGCCAAATA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3334567 45 - 10304083 GAAATGTTTTTGAAATG-CGAAGTAAACT---TGAACTAT----------AGCCAAATA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418394 45 - 107702431 GAAATGTTTTTGAAATA-CGAAGTAAACT---TGAACTAT----------AGCCAAATA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 941658 45 + 1565135 GAAATGTTTTTGAAATG-TGAAGTAAACT---TGAACTAT----------AGCCAAATA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3324975 45 - 13651311 GAAATGTTTTTGAAATA-CAAAGTGAACT---TGAACTAT----------AGCCAAGTA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3072536 44 - 7082604 GAAATGTTTCTGAAATA-CAAATTAAACT---TG-ACTAC----------AGCCAAATA i saiBol1.JH378218 C 0 I 4 s cebCap1.NW_016107454v1 558309 44 + 5243153 GAAATGTTTCTGAAATA-CAAAGTAAACT---TG-ACTAC----------AGCCAAATA i cebCap1.NW_016107454v1 C 0 I 4 s aotNan1.NW_018507213v1 1891915 44 - 1938448 GAAATGTTTCTGAAATA-CCAAGTAAACT---TG-ACTAT----------AGCCAAATA i aotNan1.NW_018507213v1 C 0 I 4 s proCoq1.NW_012151163v1 926018 45 + 1238772 GAAATGTCTTTGAAACA-CAAAGTGAACT---TGAACTGT----------AGCCAAATA i proCoq1.NW_012151163v1 C 0 I 33 s otoGar3.GL873658 2497185 42 + 5252280 GGAATGTTTTAGAAGTA-CATAGTGAACTAAGTGAATT----------------AAGTA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014853 46 + 64289059 GAAATCTTTTTGAATTACCGAAGGAAATT---TGAATCAT----------ACACAAAGA i canFam3.chr17 I 218 I 5 s dasNov3.JH580157 516029 55 + 2232271 GAAATATTTATGAAATA-CAAAATAAACT---TGAATTGtttataatatatattaaata i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e calJac3.chr14 3408155 14238 - 108792865 I a score=214872.000000 s hg38.chr2_KI270769v1_alt 17441 30 + 120616 TTTTATATTCTCTTATCAG-----AAAAAATCAC----------C s panTro5.chr2A 3454771 30 + 111504155 TTTTATATTCTCTTATCAG-----AAAAAATCAC----------C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341542 30 + 114371477 TTTTATATTCTCTTATCAG-----AAAAAATCAC----------C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215151 30 + 637652 TTTTATATTCTCTTATCAG-----AAAAAATCAC----------C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014598 30 + 81552678 GTTTATATTCTCTTATCAG-----AAAAAATCAC----------C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3273719 30 + 108979918 TTTTATATTCTCTTATCAG-----AAAAAATCGC----------C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4986808 30 - 111193037 TTTTATATTCTCTTATCAG-----AAAAAATCGC----------C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381219 30 + 3644372 TTTTATATTCTCTTATCAG-----AAAAAATCGC----------C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3334612 30 - 10304083 TTTTATATTCTCTTATCAG-----AAAAAATCGC----------C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418439 30 - 107702431 TTTTATATTCTCTTATCAG-----AAAAAATCGC----------C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 941703 31 + 1565135 TTTTATATTCTCTTATCAGA----AAAAAATCAC----------C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3325020 30 - 13651311 TTTTATATTCTCTTATCAG-----AAAAAATCTC----------C i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3072584 32 - 7082604 TTTTATATTCTCTTTTCAG-----AAAAAAAAAAAA--------C i saiBol1.JH378218 I 4 C 0 s cebCap1.NW_016107454v1 558357 40 + 5243153 TTTTATATTCTCTTTTCaa-----aaaaaaaaaaaaaaaaGCACC i cebCap1.NW_016107454v1 I 4 C 0 s aotNan1.NW_018507213v1 1891963 28 - 1938448 T----TATTCTCTTTTCAG-----AAAAAACAACAC--------C i aotNan1.NW_018507213v1 I 4 C 0 s otoGar3.GL873658 2497227 15 + 5252280 TTTTGTGTTCTCTCA------------------------------ i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014904 32 + 64289059 TTTTGTATCCTCTTATCAGGAAATAAAGAATT------------- i canFam3.chr17 I 5 C 0 s dasNov3.JH580157 516084 31 + 2232271 ttttatattCTCTCATCAGGAAATAAAGATT-------------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2613604 1017 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 926063 33 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=390915.000000 s hg38.chr2_KI270769v1_alt 17471 29 + 120616 ATTTGGGAAAGTATAAAT---TGTAAATGGTA s panTro5.chr2A 3454801 29 + 111504155 ATTTGGGAAAGTATAAAT---TGTAAATGGTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341572 29 + 114371477 ATTTGGGAAAGTATAAAT---TGTAAATGGTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215181 29 + 637652 ATTTGGGAAAGTATAAGT---TGTAAATGGTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014628 29 + 81552678 ATTTGGGAAAGTATAAAT---TGTAAATGGTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3273749 29 + 108979918 ATTTGGGAAAGTATAAAT---TATAAATGGTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4986838 29 - 111193037 ATTTGGGAAAGTATAAAT---TATAAATGGTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381249 29 + 3644372 ATTTGGGAAAGTATAAAT---TATAAATGGTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3334642 29 - 10304083 ATTTGGGAAAGTATAAAT---TATAAATGGTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418469 29 - 107702431 ATTTGGGAAAGTATAAAT---TATAAATGGTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 941734 29 + 1565135 ATTTGGGAAAGTATAAAT---TATAAATGGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3325050 29 - 13651311 ATTTGGGAAGGTATAAAT---TATAAGTGGTA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3072616 29 - 7082604 ATTTGGGAAAGTATAAAT---TGTAAATTGTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 558397 29 + 5243153 ATTTGGGAAAGTATAAAT---TGTAAATGGTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1891991 29 - 1938448 ACTTGGGAAAGTATAAAT---TGTAAATGGTA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2614621 29 - 159902609 ATTTGGAAAAGTATAAAT---TGTAAATGGTA i micMur3.chr8 I 1017 I 370 s proCoq1.NW_012151163v1 926096 29 + 1238772 ATTTGGAAAAGTATAAAT---TGTAAATGGTA i proCoq1.NW_012151163v1 I 33 I 370 s otoGar3.GL873658 2497242 19 + 5252280 --------AAGTATTAAGATACTTAAA----- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014936 29 + 64289059 ACTTGGAGAAACGTAAAT---TGTAAATGGTA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 516115 29 + 2232271 GTTTCAGCAAGTGTGAAT---TGTAAATGGTA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91399074 2522 - 120129022 I e calJac3.chr14 3408155 14238 - 108792865 I a score=280913.000000 s hg38.chr2_KI270769v1_alt 17500 38 + 120616 AAT-----------AAT--GTGTTTTCTTCTCTTTTTTTCCTTTAATGTTT s panTro5.chr2A 3454830 38 + 111504155 AAT-----------AAC--GTGTTTTCTTCTCTTTTTTTCCTTTAATGTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341601 38 + 114371477 AAT-----------AAC--GTGTTTTCTTCTCTTTTTTTCCTTTAATGTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215210 40 + 637652 AAT-----------AACATGTGTTTTCTTCTCTTTTTTTCCTTTAATGTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014657 38 + 81552678 AAT-----------AAT--GTGTTTTCTTCTCTTTTTTTCCTTTAATGTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3273778 40 + 108979918 AAT-----------AGCATGTGTTTTCTTCTCTTTTTTTCCTTTAATGTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4986867 40 - 111193037 AAT-----------AGCATGTGTTTTCTTCTCTTTTTTTCCTTTAATGTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381278 40 + 3644372 AAT-----------AGCATGTGTTTTCTTCTCTTTTTTTCCTTTAATGTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3334671 40 - 10304083 AAT-----------AGCATGTGTTTTCTTCTCTTTTTTTCCTTTAATGTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418498 40 - 107702431 AAT-----------AGCATGTGTTTTATTCTCTTTTTTTCCTTTAATGTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 941763 40 + 1565135 AAT-----------AGCATGTGTTTTCTTCTCTTTTTTTCCTTTAATGTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3325079 40 - 13651311 AAT-----------AGCATGTGTTTTCTTCTCTTTTTTTCCTTTAATGTTT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3072645 51 - 7082604 AACTTTTTTAAAATAACTTGTGTTTTCTTCTCTTTTTTTCCTTTAATGTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 558426 49 + 5243153 AAC-TTTCTAACATAACTTGTGTTTTCTTCTC-TTTTTTCCTTTAATGTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1892020 51 - 1938448 AACTTTTCTAACACGACTTGTGTTTTCTTCTCTTTTTTTCCTTTAATGTTT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2497261 17 + 5252280 -------------AATTAAGTATTT---------------------TGTTT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014965 28 + 64289059 --------------AACTTGTCTGACAACTTGTTTGTGT---------TCT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 516144 46 + 2232271 AACTTTTCT-----AGCATAAATAtttttatgttctttgttttaaattttt i dasNov3.JH580157 C 0 I 256 e micMur3.chr8 2614650 370 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 926125 370 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=247136.000000 s hg38.chr2_KI270769v1_alt 17538 26 + 120616 TTCTAAATGATTATACAAAGAAAATC s panTro5.chr2A 3454868 26 + 111504155 TTCTAAATGATTATACAAAGAAAATC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341639 26 + 114371477 TTCTAAATGATTATACAAAGAAAATC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215250 26 + 637652 TTCAAAATGATTATACAAAGAAAATC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014695 26 + 81552678 TTCTAAATGATTATACAAAGAGAATC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3273818 26 + 108979918 TTCTAAATGATTATACAAAGAAAATC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4986907 26 - 111193037 TTCTAAATGATTATACAAAGAAAATC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381318 26 + 3644372 TTCTAAATGATTATACAAAGAAAATC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3334711 26 - 10304083 TTCTAAATGATTATACAAAGAAAATC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418538 26 - 107702431 TTCTAAATGATTATACAAAGAAAATC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 941803 26 + 1565135 TTCTAAATGTTTATACAAAGAAAATC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3325119 26 - 13651311 TTCTAAATGATTATACAAAGAAAATC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3072696 26 - 7082604 TTCTAAATTACTATACAAAGAAAATC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 558475 26 + 5243153 TTCTAAATTATTATACAAAGAAAATC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1892071 26 - 1938448 TTCTAAATTATTATACAAAGAAAATC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2497278 20 + 5252280 CTCTCACAGG------AGAAAACATT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2014993 26 + 64289059 GTTTAAATTGTGATGTGAGGAAAATC i canFam3.chr17 C 0 I 175 e micMur3.chr8 2614650 370 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e proCoq1.NW_012151163v1 926125 370 + 1238772 I e dasNov3.JH580157 516190 256 + 2232271 I e calJac3.chr14 3408155 14238 - 108792865 I a score=154220.000000 s hg38.chr2_KI270769v1_alt 17564 17 + 120616 ATCTggctgggcacaat s panTro5.chr2A 3454894 17 + 111504155 ATCTggctgggcacaat i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341665 17 + 114371477 ATCTggctgggcacaat i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215276 17 + 637652 ATCTggctgggcacaat i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014721 17 + 81552678 ATCTggccgggcacaat i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3273844 17 + 108979918 ATCTggctgggcacagt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4986933 17 - 111193037 ATCTggctgggcacagt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381344 17 + 3644372 ATCTggctgggcacagt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3334737 17 - 10304083 ATCTggctgggcacagt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418564 17 - 107702431 ATCTggctgggcacagt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 941829 17 + 1565135 ATCTggctgggcacagt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3325145 17 - 13651311 ATCTggctgggcacagt i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3072722 17 - 7082604 ATCTggctgggtgcggt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 558501 17 + 5243153 ATCTggctgggtgcggt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1892097 17 - 1938448 ATCTggctgggtgcagg i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2497298 17 + 5252280 ATTTGGAAAAGTACAAG i otoGar3.GL873658 C 0 I 67 e micMur3.chr8 2614650 370 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e canFam3.chr17 2015019 175 + 64289059 I e proCoq1.NW_012151163v1 926125 370 + 1238772 I e dasNov3.JH580157 516190 256 + 2232271 I e calJac3.chr14 3408155 14238 - 108792865 I a score=2285786.000000 s hg38.chr2_KI270769v1_alt 17581 262 + 120616 ggctcatgcctgcaatcccaacacttttgggaggctgaggtaggagaatcagttgagtctaggagttcaagatcagcccgagcaatatagtgagacccctttatctacagataatttaaaaattagcctgatgtggtggcacgcacctgtagtcccagctactcgggaagctgaggtgggaggattgccagagcccaggccgtggaggctgcagtgagccctgatcgcaccactgcactccagactgggcaacaaagcaaga s panTro5.chr2A 3454911 262 + 111504155 ggctcatgcctgcaatcccaacacttttggaaggctgaggtaggagaatcagttgagtctaggagttcaagatcagcccgagcaatatagtgagaccgctttatctacagataatttaaaaattagcctgatgtggtggcacgcacctgtagtcccagctactcgggaagctgaggtgggaggattgccagagcccaggcggtggaggctgcagtgagccgtgatcgcaccactgcactccagactgggcaacaaagcaaga i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341682 262 + 114371477 ggctcatgcctgcaatcccaacacttttggaaggctgaggtaggagaatcagttgagtctaggagttcaagatcagcccgagcaatatagtgagaccgctttatctacagataatttaaaaattagcctgatgtggtggcatgcacctgtagtcccagctactcgggaagctgaggtgggaggattgccagagcccaggcggtggaggctgcagtgagccgtgatcgcaccactgcactccagactgggcaacaaagcaaga i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215293 262 + 637652 ggctcatgcctgcaatcccaacacttttgggaggctgaggtaggagaatcagttgagtctaggagttcaagatcagcccgagcaatatagtgagacccctttatctacagataatttaaaaattagcctgatgtggtggcacgcacctgtagtcccagctactcgggaagctgaggtgggaggattgccagagcccaggcggtggaggctgcagtgagccgtgatcgcaccactgcactccagactgggcaacaaagcaaga i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014738 261 + 81552678 ggctcatgcctgtaatcccaacacttttgggaggctgaggtaggagaatcagttgagtctaggagttcaagatcagcctgagcaacatagtgagatccc-ttatctacagataatttaaaaattagcctgatgtggtggcacgcccctgtagtcccagctactcgggaagctgaggtgagaggattgcctgagcccaggcggtcgaggctgcagtgagccatgatcgcaacactgcactccagcctgggcaacaaagcaaga i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3273861 259 + 108979918 ggctcatgcctgtaatcccaacacttttgggaggctaaggcaggagaatcagttgagtctaggagttcaagatcagcctgagcaacatagggagacc---ttaactacagataatttaaaaattagcctgatgtggtggcacgcacctgtagtcccagctactcgggaagctgaggtgggaggattgcctgaacccaggcggtcgaggctgcagtgagccgtgatcgcaccactgcgctccagcctgggcaacaaagcaaga i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4986950 259 - 111193037 ggctcatgcctgtaatcccaacacttttgggaggctaaggcaggagaatcagttgagtctaggagttcaagatcagcctgagcaacatagggagacc---ttaactacagataatttaaaaattagcctgatgtggtggcacgcacctgtagtcccagctactcgggaagctgaggtgggaggattgcctgaacccaggcggtcgaggctgcagtgagccgtgatcgcaccactgcgctccagcctgggcaacaaagcaaga i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381361 259 + 3644372 ggctcatgcctgtaatcccaacacttttgggaggctaaggcaggagaatcagttgagtctaggagttcaagatcagcctgagcaacatagggagacc---ttaactacagataatttaaaaattagcctgatgtggtggcacgcacctgtagtcccagctactcgggaagctgaggtgggaggattgcctgaacccaggcggtcgaggctgcagtgagccgtgatcgcaccactgcgctccagcctgggcaacaaagcaaga i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3334754 259 - 10304083 ggctcatgcctgtaatcccaacacttttgggaggctaaggctggagaatcagttgagtctaggagttcaagatcagcctgagcaacatagggagact---ttaactacagataatttaaaaattagcctgatgtggtggcacacacctgtagtcccagctactcgggaagctgaggtgggaggattgcctgaacccaggcggtccaggctgcagtgagccgtgatcgcaccactgcgctccagcctgggcaacaaagcaaga i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418581 259 - 107702431 ggctcatgcctgtaatcccaacacttttgggaggctaaggcaggagaatcagttgagtctaggagttcaagatcagcctgagcaacatagggagacc---ttaactacagataatttaaaaattcgcctgatgtggtggcacgcacctgtagtcccagctactcgggaagctgaagcgggaggattgcctgaacccaggcagtcgaggctgcagtgagccgtgatcgcaccactgcgctccagcctgggcaacaaagcaaga i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 941846 259 + 1565135 ggctcatgcctgtaatcccaacacttttgggaggctaaggcaggagaatcagttgagtctaggagttcaagatcagcctgagcaacatagggagacc---ttaactacagataatttaaaaattagcctgatgtggtggcacgcacctgtagtcccagctactcgggaagttgaggtgggaggattgcctgaacccaggcggtcgaggctgcagtgagccgtgatcgcaccactgcgctccagcctgggcaacaaagcaaga i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3325162 259 - 13651311 ggctcatgcctgtaatcccaacacttttgggaggctaaggcaggagaatcagttgagtctaggagttcaagatcagcctgagcaacatagggagagc---ttaactacagataatttaaaaattagcctgatgtggtggcacatacctgtagtcccagctactccggaagctgaggtgggagaattgcctgaacccaggcggtcgaggctgcagcgagccgcgatcgcactactgcgctccagcctgggcaacaaagcaaga i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3072739 262 - 7082604 ggcttatgcctgcaataccaacatttttgggaggctgaggcaggggaatcagttgagtctaggagttcaagatcagcctgagcaacataaggagacccccgtgtctacaaataatttgaaaattagcctgatgtggtggcacgcacctgtagtcccagccacttgggaagctaaggtgggaggatctcctaagcccaggcactcgagggtgcagtgagtcatgatcacaccactgcactccagcctgggcagcaaagcaaga i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 558518 262 + 5243153 ggctcatgcctgcaataccaacactttagggaggccgaggcaggggaatcagctgagtctaggagttcaggatcagcctgagcaacatagggagacccccgcgtctacaagtaatttgaaaattagcctgatgtggtggcacgcacctgtagtcccagctacttgggaagctaaggtgggaggatctcctaagcccaggcactcgagcgtgcagtgagtcatgatcacaccactgcactccagcctgggcaacaaagcaagg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1892114 259 - 1938448 ggctcatgcctgcaataccaacacttttgggaggccgaagcaggggaatcaattgagtctaggagttcaagatcagcctgagcaacatagggagacccccttgtctacaaataattagaaaattagcctaat---gtggcacgcacctgtagccccagctactcgggaagctaaggtgggaggatctcctaagcccaggcactcgagggtgcagtgagtcatgatcacaccactgcactccagcctgggcaacaaagcaaga i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2614650 370 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e canFam3.chr17 2015019 175 + 64289059 I e proCoq1.NW_012151163v1 926125 370 + 1238772 I e dasNov3.JH580157 516190 256 + 2232271 I e otoGar3.GL873658 2497315 67 + 5252280 I e calJac3.chr14 3408155 14238 - 108792865 I a score=192780.000000 s hg38.chr2_KI270769v1_alt 17843 56 + 120616 ctttgt--ctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGGGAAGA-----AATGAAAAAA s panTro5.chr2A 3455173 44 + 111504155 ctttgt--cttt------------aaaaaaaaaaaaaaaagaggaaga-----aaTGAAAAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341944 44 + 114371477 ctttagaacttt--------------aaaaaaaaaaaaagaaggaaga-----aaTGGAAAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215555 42 + 637652 ctttgt--cttt--------------aaaaaaaaaaaaaagaggaaga-----aatgaaaaaA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3014999 49 + 81552678 ccttgt--cttt-------aaaaaaaaaaaaaaaaaaaaaGAGGAAGA-----AATCAAACAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3274120 41 + 108979918 ccttgt--cttt---------------aaaaaaaaaaaaaaaggaaga-----aatgaaaaaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4987209 39 - 111193037 ccttgt--cttt-----------------aaaaaaaaaaaaaggaaga-----aatgaaaaaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381620 42 + 3644372 ccttgt--cttt--------------aaaaaaaaaaaaaaaaggaaga-----aatgaaaaaA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335013 38 - 10304083 ccttgt--ctt------------------aaaaaaaaaaaaaggaaga-----aatgaaaaaa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418840 42 - 107702431 cc-tgt--cttt-------------aaaaaaaaaaaaaaaaaGGAGGA-----AATGAAAAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 942105 45 + 1565135 ccttgt--cttt-----------aaaaaaaaaaaaaaaaaaaggaaga-----aaTGAAAAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3325421 31 - 13651311 ccttgt--cttt-------------------------aaaaaaaaaga-----aaagaaaaaa i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3073001 48 - 7082604 tgctgt--ct-------------aaaaaaaaaaaaaaaGGAAGGGAGAAGGAGAAGGAAAAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 558780 52 + 5243153 tgctgt--ctta---------aaaaaaaaaaaaaaaaaagaagaagaaaGGAGAAGGAAAAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1892373 46 - 1938448 cgctgt--ct---------------taaaaagaaaaaaagaaGGGAGAAGGAGAAGGAAAGAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2497382 35 + 5252280 CCTTGT--TTTT-----------------AATTATGATAGAAGGAAAA---------TTATCC i otoGar3.GL873658 I 67 C 0 e micMur3.chr8 2614650 370 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e canFam3.chr17 2015019 175 + 64289059 I e proCoq1.NW_012151163v1 926125 370 + 1238772 I e dasNov3.JH580157 516190 256 + 2232271 I e calJac3.chr14 3408155 14238 - 108792865 I a score=126008.000000 s hg38.chr2_KI270769v1_alt 17899 14 + 120616 TCCTGTTTCTATTC s panTro5.chr2A 3455217 14 + 111504155 TCCTGTTTCTGTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3341988 14 + 114371477 TCCTGTTTCTGTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215597 14 + 637652 TCCTGTTTCTGTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015048 14 + 81552678 TCATCTTTCTGTTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3274161 14 + 108979918 TCATCTTTCTATTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4987248 14 - 111193037 TCATCTTTCTATTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381662 14 + 3644372 TCATCTTTCTATTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335051 14 - 10304083 TCATCTTTCTATTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418882 14 - 107702431 TCATCTTTCTATTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 942150 14 + 1565135 TCATCTTTCTGTTT i manLeu1.NW_012104432v1 C 0 I 7586 s colAng1.NW_012118821v1 3325452 14 - 13651311 TCGTCTTTCTGTTT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3073049 14 - 7082604 TCATCTCTCTGTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 558832 14 + 5243153 TCATCTTTCTGTTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1892419 14 - 1938448 TCATCTTTCTGTTC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2497417 14 + 5252280 CCATCTCTTTGCTC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 516446 14 + 2232271 TCATCTCTCTGTTT i dasNov3.JH580157 I 256 C 0 e micMur3.chr8 2614650 370 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e canFam3.chr17 2015019 175 + 64289059 I e proCoq1.NW_012151163v1 926125 370 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=649843.000000 s hg38.chr2_KI270769v1_alt 17913 70 + 120616 CCTCTACTGATGCATCTGACTCTCACACC------------ACATCTAAATTAGAGATGA-AGGGGCTCT-CTCAGTCACGTCT s panTro5.chr2A 3455231 70 + 111504155 CCTCTACTGATGCATCTGACTCTCACACC------------ACATCTAAATTAGAGATGA-AGGGGCTCT-CTCAGTCACCTCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342002 70 + 114371477 CCTCTACTGATGCATCTGACTCTCACACC------------ACATCTAAATTAGAGATGA-AGGGGCTCT-CTCAGTCACCTCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215611 70 + 637652 CCTCTACTGATGCATCTGACTCTCACACC------------ACATCTAAATTAGAGATGA-AGGGGCTCT-CTCAGTCACCTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015062 70 + 81552678 CCTCTACTGATGCATCTGACTCTTACACC------------ACATCTAAATTAGAGATGA-AGGGGCTCT-GTCAGTCACCTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3274175 70 + 108979918 CCCCTACTGATGTGTCTGACTCTCACGCC------------ACATCTAAATTAGAGATGA-AGGGGCTCT-CTCAGTCACCTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4987262 70 - 111193037 CCTCTACTGATGTGTCTGACTCTCACGCC------------ACATCTAAATTAGAGATGA-AGGGGCTCT-CTCAGTCACCTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381676 70 + 3644372 CCTCTACTGATGTGTCTGACTCTCACGCC------------ACATCTAAATTAGAGATGA-AGGGGCTCT-CTCAGTCACCTCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335065 70 - 10304083 CCTCTACTGATGTGTCTGACTGTCACGCC------------ACATCTAAATTAGAGATGA-AGGGGCTCT-CTCAGTCACCTCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418896 70 - 107702431 CCTCTACTGATGTGTCTGACTCTCACGCC------------ACATCTAAATTAGAGATGA-AGGGGCTCT-CTCAGTCACCTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 949750 70 + 1565135 CCTCTACTGATGTGTCTGACTCTCACGCC------------ACATCTAAATTAGAGATGA-AGGGGCTCT-CTCAGTCACCTCT i manLeu1.NW_012104432v1 I 7586 C 0 s colAng1.NW_012118821v1 3325466 68 - 13651311 CCTCTACGGATGTGTCTGACTG--ACGCC------------ACATCTAAATTAGAGATGA-AGGGGCTCT-CTCAGTCACCTCT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3073063 81 - 7082604 CCTCTACTGATGTGTCTGACTGTCACACCAGAAGATGATCTACATCTAAATGAGAGATGA-AGGGGCTCT--TCAGTCACCTCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 558846 81 + 5243153 CCTCTACTGATGTGTCTGACTCCCACACCAGAAGATGATCTACATCTAAATGAGAGATGA-AGGGGCTCT--TCAGTCACCTCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1892433 81 - 1938448 CCTCTACTGATGTGTCTGACTCTCACACCAGAAGATGATCTACATCTAAATTAGAGATGA-AGGGGCTCT--TCAGTCACCTCT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2497431 62 + 5252280 CTTCCATGAGCACATCTGATGCTCACACC------------A-ACCTGGATTAGAGAGGA-GGGTGC-----TGGGCCACC--- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 516460 84 + 2232271 CTTCTACTTGCATGCCTGACTCTCAAACCAGAAGATAACCCAAATCTAAATTAGAGATCAGAGGAGCTATGCTTAATCCTCTCC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2614650 370 - 159902609 I e mm10.chr12 91399074 2522 - 120129022 I e canFam3.chr17 2015019 175 + 64289059 I e proCoq1.NW_012151163v1 926125 370 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=1033490.000000 s hg38.chr2_KI270769v1_alt 17983 120 + 120616 GCCCTGAATTGCAGTGG--GGGCTCTCCCCAGC-----------------TG--AGGTGTGAGGCTGGG-TCTGGGCCTTGCCCCTTTGCTCCCCACTCCGTGTCCCCCAGCAGGTCTG-CCAGCGCCGAGCCCTCTGCGCCT-- s panTro5.chr2A 3455301 120 + 111504155 GCCCTGAATTGCAGTGG--GGGCTCTCCCCAGC-----------------TG--AGGTGTGAGGCTGGG-TCTGGGCCTTGCCCCTTTGCTCCCCACTCCGTGTCCCCCAGCAGGTCTG-CCAGTGCCGAGCCCTCTGCGCCT-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342072 120 + 114371477 GCCCTGAATTGCAGTGG--GGGCTCTCCCCAGC-----------------TG--AGGTGTGAGGCTGGG-TCTGGGCCTTGCCCCTTTGCTCCCCACTCCGTGTCCCCCAGCAGGTCTG-CCAGTGCCGAGCCCTCTGCGCCT-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215681 120 + 637652 GCCCTGAATTGCAGTGG--GGGCTCTCCCCAGC-----------------TG--AGGTGTGAGGCTGGG-TCTGGGCCTTGCCCCTTTGCTCCCCACTCCGTGTCCCCCAGCAGGTCTG-CCAGCGCCGAGCCCTCTGCACCT-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015132 120 + 81552678 GCCCTGAATTGCAGTGG--GAGCCCTCCCCAGC-----------------TG--AGGTGTGAGGCTGGG-TCTGGGCCTTGCCCCTTTGCTCCCCACTCCGTGTCCCCCAGCAGGTCTG-CCAGCGCTGAGCCCTCTGCGCCT-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3274245 119 + 108979918 GTCCTGAATTGCAGTGG--AGGCCCTCCCCAGC-----------------TG--AGGTCTGAGGCTGGG-TCTGGGCCTTGCCCCTTTGCTCCCC-CTCCGTGTCCCCCAGCAGGTCTG-CCAGCACCGAGTCCTCTGCGCCT-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4987332 119 - 111193037 GTCCTGAATTGCAGTGG--AGGCCCTCCCCAGC-----------------TG--AGGTCTGAGGCTGGG-TCTGGGCCTTGCCCCTTTGCTCCCC-CTCCGTGTCCCCCAGCAGGTCTG-CCAGCACCGAGTCCTCTGCGCCT-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381746 119 + 3644372 GTCCTGAATTGCAGTGG--AGGCCCTCCCCAGC-----------------TG--AGGTCTGAGGCTGGG-TCTGGGCCTTGCCCCTTTGCTCCCC-CTCCGTGTCCCCCAGCAGGTCTG-CCAGTACCGAGTCCTCTGCGCCT-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335135 119 - 10304083 GTCCTGAATTGCAGTGG--AGGCCCTCCCCAGC-----------------TG--AGGTCTGAGGCTGGG-TCTGGGCCTTGCCCCTTTGCTCCCC-CTCCGAGTCCCCCAGCAGGTCTG-CCAGCACCGAGTCCTCTGCGCCT-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3418966 116 - 107702431 GTCCTGAATTGCAGTGG--AGGC---CCCCAGC-----------------TG--AGGTCTGAGGCTGGG-TCTGGGCCTTGCCCCTTTGCTCCCC-CTCCGTGTCCCCCAGCAGGTCTG-CCAGCACCGAGTCTTCTGTGCCT-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 949820 119 + 1565135 GTCCTGAATTGCAGTGG--AGGCCCTCCCCAGC-----------------TG--AGGTCTGAGGCTGGG-TCTGGGCCTTGCCCCTTTGCTCCCC-CTCCGAGTCCCCCAGCAGGTCTG-CCAGCACTGAGTCCTCTGCGCCT-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3325534 119 - 13651311 GTCCTGAATTGCAGTGG--AGGCCCTCCCCAGC-----------------TG--AGGTCTGAGGCTGGG-TCTGGGCCTTGCCCCTTTGCTCTCA-CTCCGTGTCCCCCAGCAGGTCTG-CCAGCACTGAGTCCTCTGCGCCT-- i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3073144 120 - 7082604 GTCCTGAATTGCAGTGG--GGACCGTCCCCAGC-----------------TG--AGATCCGAGGCTGCG-TCTGGACCTCGCCCCTTTGCTCCCCACTCTGTGTCCTCCAACACGTCTG-CCAGCTCCAAGCCCTCTGCGCCT-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 558927 119 + 5243153 GTCCTGAATTCCGGT-G--GGACCCTCCCCAGC-----------------TG--AGGTCTGAGGCTGGG-TCTGGGCCTTGCCCCTTTGCTCCCCACTCCGTGTCCTCCAGCAGATCTG-CCAGTGCCAGGCCCTCTGCGCCT-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1892514 120 - 1938448 GTCCTGAATTGCGGTGG--GGGCCCTCCCCAGG-----------------TG--ACGTCTGAGGCTGGG-TCTGGGCCGTGCCCCTTTGCTCCCCACTCTATGTCCTCCAACAGGTCTG-CCAGCGCCAAGCCCTCTGCGCCT-- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2497493 84 + 5252280 -------------GTGC--GG---CTCCCTGG---------------------------------------CCGGGCCTTGGCCCTCATTCCCAC-AGCCGGAGCCTCAGACAGGTCTT-CGGGCCTCATGGCCACCTGGGCT-- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91401596 109 - 120129022 GTCCTAAGTTAC--CAG--GAGCCCTTTCTGCC-----------------TGCAAGTTCCAAATCTAAC-CCTGGACCTTGACTCTCTACCACAA-GTTCATGTTCCCAA--ATGCCTT-ACAG--------CCCCTGAGACT-- i mm10.chr12 I 2522 C 0 s dasNov3.JH580157 516544 142 + 2232271 -TCCTGAATTATAATAGAAAGGCTCCTGCCTGCCCCTTAATAGAATAAAATG--AGCCACAGATCTGAGTTCCAGTCCTTGCCGCATTTCTCATAAACCCAAAATCTTCAAAAGGTCTGTTTAACTCCATGTGCTTTCTGTTTCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2614650 370 - 159902609 I e canFam3.chr17 2015019 175 + 64289059 I e proCoq1.NW_012151163v1 926125 370 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=192822.000000 s hg38.chr2_KI270769v1_alt 18103 26 + 120616 CCACCTGGGAGATGCAGGTGGAAAGG s panTro5.chr2A 3455421 26 + 111504155 CCACCTGGGAGATGCAGGTGGAAAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342192 26 + 114371477 CCACCTGGGAGATGCAGGTGGAAAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215801 26 + 637652 CCACCTGGGAGATGCAGGTGGAAAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015252 26 + 81552678 CCACCTGGGAGATGCAGGTGGAAAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3274364 25 + 108979918 CCACTT-GGAGATGCAGGTGGAAAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4987451 25 - 111193037 CCACTT-GGAGATGCAGGTGGAAAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381865 25 + 3644372 CCACTT-GGAGATGCAGGTGGAAAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335254 25 - 10304083 CCACTT-GGAGATGCAGGTGGAAAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419082 25 - 107702431 CCACTT-GGAGATGCAGGTGGAAAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 949939 25 + 1565135 CCACTT-GGAGATGCAGGTGGAAAGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3325653 25 - 13651311 CCACTT-GGAGATGCAGGTGGACAGG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3073264 25 - 7082604 CCACCCAGGAGATGCAGGTGGAAA-G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 559046 25 + 5243153 CCACCCAGGAGATGCAGGTGGAAA-G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1892634 25 - 1938448 CCACCCGGGAGATGCAGGTGGAAA-G i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2497577 22 + 5252280 CCCTGTGAGAAATGGA----GAAGGG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91401705 22 - 120129022 CC---TGAGGAATGAAGGTGGCAG-G i mm10.chr12 C 0 C 0 s canFam3.chr17 2015194 20 + 64289059 CCACCA-GGAAGGGCAG-----AGAG i canFam3.chr17 I 175 C 0 s dasNov3.JH580157 516686 26 + 2232271 TAATCTGCAAAAATAAAATGGAATGG i dasNov3.JH580157 C 0 I 1047 e micMur3.chr8 2614650 370 - 159902609 I e proCoq1.NW_012151163v1 926125 370 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=109767.000000 s hg38.chr2_KI270769v1_alt 18129 16 + 120616 GCTGCCCAGACTC-TCT s panTro5.chr2A 3455447 16 + 111504155 GCTGCCCAGACTC-TCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342218 16 + 114371477 GCTGCCCAGACTC-TCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215827 16 + 637652 GCTGCCCAGACTC-TCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015278 16 + 81552678 GCTGCCCAGACTC-TCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3274389 16 + 108979918 GCTGCCCAGACTC-TGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4987476 16 - 111193037 GCTGCCCAGACTC-TGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381890 16 + 3644372 GCTGCCCAGACTC-TGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335279 17 - 10304083 GCTGCCCAGACTCTTGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419107 16 - 107702431 GCTGCCCAGACTC-TGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 949964 16 + 1565135 GCTGCCCATACTC-TGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3325678 16 - 13651311 GCTGCCCAGACTC-TGC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3073289 13 - 7082604 GCTGCCCAGACTG---- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 559071 13 + 5243153 GCTGCCCAGACTG---- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1892659 13 - 1938448 GCTGCCCAGACTG---- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2497599 15 + 5252280 GCTGCCC-GGCTC-CCT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91401727 13 - 120129022 GCTGTCAGGCTGC---- i mm10.chr12 C 0 C 0 s canFam3.chr17 2015214 13 + 64289059 GCACCCCAACCCC---- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2614650 370 - 159902609 I e proCoq1.NW_012151163v1 926125 370 + 1238772 I e dasNov3.JH580157 516712 1047 + 2232271 I e calJac3.chr14 3408155 14238 - 108792865 I a score=86993.000000 s hg38.chr2_KI270769v1_alt 18145 13 + 120616 CTGCCACGTGCTC s panTro5.chr2A 3455463 13 + 111504155 CTGCCGCGTGCTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342234 13 + 114371477 CTGCCGCGTGCTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215843 13 + 637652 CTGCCACGTGCTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015294 13 + 81552678 CTGCCGCGTGCTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3274405 13 + 108979918 GTGCCGCATACTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4987492 13 - 111193037 GTGCCGCATACTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381906 13 + 3644372 GTGCCGCATACTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335296 13 - 10304083 GTGCCGCATACTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419123 13 - 107702431 GTGCCACATACTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 949980 13 + 1565135 GTGCCGCATACTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3325694 13 - 13651311 GTGCCGCATACTC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3073302 12 - 7082604 -TGCTGCCTGCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 559084 12 + 5243153 -TGCTGCGTGCTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1892672 12 - 1938448 -TGCTGTGTGCTC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2497614 12 + 5252280 GCACAGGGTGTG- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91401740 12 - 120129022 -TGCCCTGGGCTG i mm10.chr12 C 0 C 0 s canFam3.chr17 2015227 11 + 64289059 -CACCACCTGCT- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 517759 13 + 2232271 CTGCCAGATAATA i dasNov3.JH580157 I 1047 C 0 e micMur3.chr8 2614650 370 - 159902609 I e proCoq1.NW_012151163v1 926125 370 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=305200.000000 s hg38.chr2_KI270769v1_alt 18158 27 + 120616 TTTTGTG---TTATCGTCTCAGGGAATTGG s panTro5.chr2A 3455476 27 + 111504155 TTTTGTG---TTATCGTCTCAGGGAATTGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342247 27 + 114371477 TTTTGTG---TTATCGTCTCAGGGAATTGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215856 27 + 637652 TTTTGTG---TTATCGTCTCAGGGAATTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015307 27 + 81552678 TTTTGTG---TTATTGTCTCAGGGAATTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3274418 27 + 108979918 TTTCGTG---TTATTGTCTCAGGGAATTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4987505 27 - 111193037 TTTCGTG---TTATTGTCTCAGGGAATTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381919 27 + 3644372 TTTCGTG---TTATTGTCTCAGGGCATTGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335309 27 - 10304083 TTTCGTG---TTATTGTCTCAGGGAATTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419136 27 - 107702431 TTTTGTG---TTATTGTCTCAGGGAACTGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 949993 27 + 1565135 TTTTGTG---TTATTATCTCAGGGAATTGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3325707 26 - 13651311 TTT-GTG---TTACTGTCTCAGGGAATTGG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3073314 27 - 7082604 TTTTGTG---TTACTGTCTTAGGGAACTGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 559096 27 + 5243153 TTTTGTG---TTACTGTCTTAGGGAACTGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1892684 27 - 1938448 TTTTGTG---TTACTGTCTTAGGGAACTGG i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 926495 27 + 1238772 TTTCGTG---TTATTGTCTCAAGTAATCGA i proCoq1.NW_012151163v1 I 370 C 0 s otoGar3.GL873658 2497626 27 + 5252280 TGTCGGG---TCACTGTCCCAAACAGTTGA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91401752 27 - 120129022 TTGTGTG---TTAAGGTGAGGAGGAAGTGG i mm10.chr12 C 0 C 0 s canFam3.chr17 2015238 25 + 64289059 --GTGCC---TAATTGTCTTGAGAAATTAG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 517772 30 + 2232271 TTTTGTGTATTAATTATCTCAAGTAATTAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2614650 370 - 159902609 I e calJac3.chr14 3408155 14238 - 108792865 I a score=7985708.000000 s hg38.chr2_KI270769v1_alt 18185 570 + 120616 GTTGTTCTGACTC-CTAGAAAATTGGCTCTCGGGTTGGTGTAAGTTTGTGTAGATATGACTGCATGTCATTTATAGACCAATCGATATTAACCAGTAAATTGCTCACTCTAATA-GTGCACACTTAATCAATAGCAGCAATTATCCAAGTAAATCTTTCATATTCAGTCA---TCTGTGGAAAAATTATATTGGGAGAAACC-GTAACAA--------------GAGCATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCCACTTTTT-AAAAGATTTACATTTCCC--AAAGAAATGAATAATTAAGATGGT-AGGCATTTGCTTTATTTTTAATAGTTGTGATCTAGTGTGAGACATAGAAAATAAGTCTTAGAAT---ATGAAATCATGGCAAAAGCTGAAGGCTTTTTATATGATATGTTTTACTATTTTTAATCATTTATGGAGTACTTTATGTTTGCAAAGCCCTTGCAAATAATTTTATT-ACACATGTAAATGTTTGATTGGTGGCGAGTATCTATACATAGTGGGTATAAAATGAGATGGAAGCCTTTACTGTAAAATATGTCTTACTTGTTTAAAAAATA s panTro5.chr2A 3455503 570 + 111504155 GTTGTTCTGACTC-CTAGAAAATTGGCTCTCGGGTTGGTGTAAGTTTGTGTAGATATGACTGCATGTCATTTATAGACCAATCGATATTAACCAGTAAATTGCTCACTCTAATA-GTGCACACTTAATCAATAGCAGCAATTATCCAAGTAAATCTTTCATATTCAGTCA---TCTGTGGGAAAATTATATTGGGAGAAACT-GTAACAA--------------GAGCATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCCACTTTTT-AAAAGATTTACATTTCCC--AAAGAAATGAATAATTAAGATGGT-AGGCATTTGCTTTATTTTTAATAGTTGTGATCTAGTGTGAGACATAGAAAATAAGTCTTAGAAT---ATGAAATCATGGCAAAAGCTGAAGGCTTTTTATATGATATGTTTTACTATTTTTAATCATTTATGGAGTACTTTATATTTGCAAAGCCCTTGCAAATAATTTTATT-ACACATGTAAATGTTTGATTGGTGGCGAGTATCTATATATAGTGGGTATAAAATGAGATGGAAGCCTTTACTGTAAAATATTTCTTACTTGTTTAAAAAATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342274 570 + 114371477 GTTGTTCTGACTC-CTAGAAAATTGGCTCTCGGGTTGGTGTAAGTTTGTGTAGATATGACTGCATGTCATTTATAGACCAATCGATATTAACCAGTAAATTGCTCACTCTAATA-GTGCACACTTAATCAATAGCAGCAATTATCCAAGTAAATCTTTCATATTCAGTCA---TCTGTGGGAAAATTATATTGGGAGAAACT-GTAACAA--------------GAGCATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCCACTTTTT-AAAAGATTTACATTTCCC--AAAGAAATGAATAATTAAGATGGT-AGGCATTTGCTTTATTTTTAATAGTTGTGATCTAGTGTGAGACATAGAAAATAAGTCTTAGAAT---ATGAAATCATGGCAAAAGCTGAAGGCTTTTTATATGATATGTTTTACTATTTTTAATCATTTATGGAGTACTTTATATTTGCAAAGCCCTTGCAAATAATTTTATT-ACACATGTAAATGTTTGATTGGTGGCGAGTATCTATATATAGTGGGTATAAAATGAGATGGAAGCCTTTACTATAAAATATTTCTTACTTGTTTAAAAAATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 215883 570 + 637652 GTTGTTCTGACTC-CTAGAAAATTGGCTCTCGGGTTGGTGTAAGTTTGTGTAGATATGACTGCATGTCATTTATACACCAATCGATATTAACCAGTAAATTGCTCACTCTAATA-GTGCACACTTAATCAATAGCAGCAATTATCCAAGTAAATCTTTCATATTCAGTCA---TCTGTGGGAAAATTATATTGGGAGAAACT-GTAACAA--------------GAGCATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCCACTTTTT-AAAAGATTTACATTTCCC--AAAGAAATGAATAATTAAGATGGT-AGGCATTTGCTTTATTTTTAATAGTTGTGATCTAGTGTGAGACATAGAAAATAAGTGTTAGAAT---ATGAAATCATGGCAAAAGCTGAAGGCTTTTTATATGATATGTTTTACTGTTTTTAATCATTTATGGAGTACTTTATATTTGCAAAGCCCTTGCAAATAATTTTGTT-ACACATGTAAATGTTTGATTGGTGGCGAGTATCTATACATAGTGGGTATAAAATGAGATGGAAGCCTTTACTGTAAAATATTTCTTACTTGTTTAAAAAATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015334 570 + 81552678 GTTGTTCTGACTC-CTAGAAAATTGGCTCTCGGGTCGGTGTAAGTTTGTATAGATATGACTGCATGTCATTTATAGACCAATCGATATTAACCAGTAAATTGCTTACTCTAATA-GTGCACACTTAATCAACAGCAGCAATTATCCAAGTAAATCTTTCCTATTCAGTCA---TCTGTGGGAAAATTATATCGGGAGAAACT-GTAACAA--------------GAGCATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCCACTTTTT-AAAAGATTTACATTTCCC--AAAGAAATGAATAATTAAGATGGT-AGGCGTTTGCTTTATTTTTAATAGTTGTGATCTAGTGTGAGACATAGAAAACAAGTCTTAGAAT---ATGAAATCATGGCAAAAGCTGAAGGCTTTTTATATGATATGTTTTACTATTTTAAATCATTTATGGAGTACTTTATATTTGCAAAGTCCTCACAAATAATTTTATT-ACACATGTAAATGTTTGATTGGTGGTGAGCCTCTATACATAGTGGGTATAAAATGAGATGGAAGCCTTTACTGTAAAATATTTCTTACTTGTTTAAAAAATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3274445 564 + 108979918 GTTGTTCTGACTC-CTAGAAGATTGACTCTCAGGTTGGTGTAAGTTTG--TAGATAGGACTACATGTCGTTTATAGACCAATCGATATTAACCAGTAAATTGCTCACTCTAATA-GCGCACACTTAATCAATAGTAGCAATTATCCAAGTAAATCTTTCATATTCAGTCA---TCTGTGGGAAAATTATATTGGGAGAAACT-GTAACAA--------------GAGCATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCCACTTTTT-AAAAGATTTACATTTCCC--CAAGAAATGAATAATTAAGATGGT-AGGCGTTTGCTTTATTTTTAATAGTTGTGATCTAGTGTGAGACATAGAAAACAAGTCTTAGAAT---ATGAAATCATGGCAAAAGCTGAAGGCTTTTTATATGATATGTTTTACTATTTTTAATCATTTATGGAGTACTTTATATTTGCAAAGTCCTTGCAAATAATTTTATT-AAACATGTAAA----TGATTGGTGGTGAGTATCTATACATAGTGGGTATAAAATGAGACAGAAGCCCTTACTGTAAAATATTTCTTACTTGTTTAAAACATA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4987532 564 - 111193037 GTTGTTCTGACTC-CTAGAAGATTGACTCTCAGGTTGGTGTAAGTTTG--TAGATAGGACTACATGTCGTTTATAGACCAATCGATATTAACCAGTAAATTGCTCACTCTAATA-GCGCACACTTAATCAATAGTAGCAATTATCCAAGTAAATCTTTCATATTCAGTCA---TCTGTGGGAAAATTATATTGGGAGAAACT-GTAACAA--------------GAGCATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCCACTTTTT-AAAAGATTTACATTTCCC--CAAGAAATGAATAATTAAGATGGT-AGGCGTTTGCTTTATTTTTAATAGTTGTGATCTAGTGTGAGACATAGAAAACAAGTCTTAGAAT---ATGAAATCATGGCAAAAGCTGAAGGCTTTTTATATGATATGTTTTACTATTTTTAATCATTTATGGAGTACTTTATATTTGCAAAGTCCTTGCAAATAATTTTATT-AAACATGTAAA----TGATTGGTGGTGAGTATCTATACATAGTGGGTATAAAATGAGACAGAAGCCCTTACTGTAAAATATTTCTTACTTGTTTAAAACATA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3381946 564 + 3644372 GTTGTTCTGACTC-CTAGAAGATTGACTCTCAGGTTGGTGTAAGTTTG--TAGATAGGACTACATGTCGTTTATAGACCAATCGATATTAACCAGTAAATTGCTCACTCTAATA-GCGCACACTTAATCAATAGTAGCAATTATCCAAGTAAATCTTTCATATTCAGTCA---TCTGTGGGAAAATTATATTGGGAGAAACT-GTAACAA--------------GAGCATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCCACTTTTT-AAAAGATTTACATTTCCC--CAAGAAATGAATAATTAAGATGGT-AGGCGTTTGCTTTATTTTTAATAGTTGTGATCTAGTGTGAGACACAGAAAACAAGTCTTAGAAT---ATGAAATCATGGCAAAAGCTGAAGGCTTTTTATATGATATGTTTTACTATTTTTAATCATTTATGGAGTACTTTATATTTGCAAAGTCCTTGCAAATAATTTTATT-AAACATGTAAA----TGATTGGTGGTGAGTATCTATACATAGTGGGTATAAAATGAGACAGAAGCCCTTACTGTAAAATATTTCTTACTTGTTTAAAACATA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335336 561 - 10304083 GTTGTTCTGACTC-CTAGAAGATTGACTCTCAGGTTGGTGTAAGTTTG--TAGATAGGACTACATGTCGTTTATAGACCAATGGATATTAACCAGTAAATTGCTCACTCTAATA-GGGCACACTTAATCAGTAGCAGCAATTATCCAAGTAAATCTTTCATATTCAGTCA---TCTGTGGGAAAATTATATTGGGAGAAACT-GTAACAA--------------GAGCATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCCACTTTTT-AAAAGATTTACATTTCCC--CAAGAAATGAATAATTAAGATGGT-AGGCGTTTGCTTTATTTTTAATAGTTGTGATCTAGTGTGAGACATAGAAAACAAGTCTTAGAAT---ATGAAATCATGGCAAAAGCTGAAGGCTTTTTAT---ATATGTTTTACTATTTTTAATCATTTATGGAGTACTTTATATTTGCAAAGTCCTTGCAAATAATTTTATT-AAACATGTAAA----TGATTGGTGGTGAGTATCTATACATAGTGGGTATAAAATGAGACAGAAGCCCTTACTGTAAAATATTTCTTACTTGTTTAAAACATA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419163 563 - 107702431 GTTGTTCTGACTC-CTAGAAGATTGACTCTCAGGTTGGTGTAAGTTTG--TAGATAGGACTACATGTCATTTATAGACCAATCGATATTAACCAGTAAATTGCTTACTCTAATA-GGGCACACTTAATCAATAGCAGCAATTATCCAAGTAAATCTTTCATATTCAGTCA---TCTGTGGGAGAATTATATTGGGAGAAACT-GTAACAA--------------GAGCATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCCACTTTTT--AAAGATTTACATTTCCC--CAAGAAATGAATAATTAAGATGGT-AGGCGTTTGCTTTATTTTTAATAGTTGTGATCTAGTGTGAGACATAGAAAACAAGTCTTAGAAT---ATGAAATCATGGCAAAAACTGAAGGCTTTTTATATGATATGTTTTACTATTTTTAATCATTTATGGAGTACTTTATATTTGCAAAGTCCTTGCAAATAATTTTATT-AAACATATAAA----TGATTGGTGGTGAGTATCTATACATAGTGTGTATAAAATGAGACAGAAGCCCTTACTGTAAAATATTTCTTACTTGTTTAAAACATA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950020 564 + 1565135 GTTGTTCTGACTC-CTAGAAGATTGACTCTCAGGTTGGTGTAAGTTTG--TAGATAGGATTACATGTCATTTATAGACCAATCGATATTAACCAGTAAATTGCTCACTCTAATA-GGGCACACTTAATCAATAGCAGCAATTATCCAAGTAAATCTTTCATATTCAGTCA---TCTGTGGGAAAATTATATTGGGAGAAACT-GTAACAA--------------GAGCATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCCACTTTTT-AAAAGATTTACATTTCCC--CAAGAAATGAATAATTAAGATGGT-AGGCGTTTGCTTTATTTTTAATAGTTGTGATCTAGTGTGAGACATAGAAAACAAGTCTTAGAAT---ATGAAATCATGGCAAAAGCTGAAGGCTTTTTATATGATATGTTTTACTATTTTTAATCATTTATGGAGTACTTTATATTTGCAAAGTCCTTGCAAATAATTTTATT-AAACATGTAAA----TGATTGGTGGTGAGTATCTATATATAGTGGGTATAAAATGAGACAGAAGCCCTTACTGTAAAATATTTCTTACTTGTTTAAAACATA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3325733 564 - 13651311 GTTGTTCTGACTC-CTAGAAGATTGACTCTCAGGTTGGCGTAAGTTTG--TAGATAGGACTACATGTCGTTTATAGACCAATCGATATTAACCAGTAAATTGCTCACTCTAATA-GCGTACACTTAATCAATAGCAGCAATTATCCAAGTAAATCTTTCATATTCAGTCA---TCTGTGGGAAAATTATATTGGGAGAAACT-GTAACAA--------------GAGCATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCCACTTTTT-AAAAGATTTACATTTCCC--CAAGAAATGAATAATTAAGATGGT-AGGCGTTTGCTTTATTTTTAATAGTTGTGATCTAGTGTGAGACATAGAAAACAAGTCTTAGAAT---ATGAAATCATGGCAAAAGCTGAAGGCTTTTTATATGATATGTTTTTCTATTTTTAACCATTTATGGAGTACTTTATATTTGCAAAGTCCTTGCAAATAATTTTATT-AAACATGTAAA----TGATTGGTGGTGAGTATCTATATATAGTGGGTATAAAATGAGACAGAAGCCCTTACTGTAAAATATTTCTTACTTGTTTAAAACATA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3073341 587 - 7082604 GTTGTTTTGACTC-CTAGAAAATTGGCTCTCAGGTTGGTGTAAGTTTGTGTAGCTATTACTACATGTTATTTATAGACCAATCGATATTAACCAGTAAATTGCTTAGACTAATA-GTATACACTTCATCAATAGCAGCAATTATCCAAGTAAATCTTTCATCTTCAGTCA---TCTGTAGGAAAATCATATTGGGAGAAACT-ATAACAAAATTATATTGGGAGAAACAGAAGCATTTCTGTTTCCTATTTTC-AGTCAGGAAAGAAGCCACTTTTTTAAAAGATTTACATTTCCCC-AAAAAAATGAATAATTAAGATGGTGAGGCTTTTGCTTTATTTTTAATTGTTGTGATCTAGTGTGATACAAAGAAAACAAGTCCTAGAAT---ATGAAATCATAGCAAAAGCTGAAGGCTTTTTATATGATATGTTTTCCTATTTTTAGTCATTTGTGGAGTACTTTATATTTGCAAAGTCCTTCCAAATAATTTTATT-GCACATGTCAATGTTTTATTGGTGGTGAGTATCCATACATAGTGGGTATAAACTGAGATGGGAGCCTTTACTGTGGAATATTTCTTACTTGTTTAAAAAATA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 559123 588 + 5243153 GTTGTTTTAACTC-CTAGAAAATTGGCTCTCAGGTTGGTGTAAGTTTGTGTAGATATTACTACATGTTATTTATAGACCAATCGATATTAACCAGTAAATTGGTTAGTCTAACA-GTATACACTTCATCAGTAGCAGCAATTATCCAAGTAAATCTTTCATCTTCAGTCA---TCTGTGGGAAAATTATATTGGGAGAAACT-GTAACAAAATTATGTTGGGAGAAACATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCTACTTTTTTAAAAGATGTACATTTCCCCAAAAAAAATGAATAATTAAGATGGTGAGGCTTTTGCTTTATTTTTAATAGTTGTGATCTAGTGTGAGACATAGAAAACAAGTCCTAGAAT---ATGAAATCATAGCAAAAGCTGAAGGCTTTTTATATGATATGTTTTACTATTTTTAATCATTTATGGAGTACTTTATATTTGCAGAGTCCTTGCAAATAATTTTATT-GCACATGTAAATGTTTTATTGGTGGTGAGTATCTATACATAGTGGGTATAAACTGAGATGGGAGCCTTTACTGTGGAATATTTCTTACTTGTTTAAAAAATA i cebCap1.NW_016107454v1 C 0 I 158 s aotNan1.NW_018507213v1 1892711 571 - 1938448 GTTGTTTTGACTC-CTAGAAAATTGGCTCTCAGGTTGGTGTAAGTTTGTGTAGATATTACTACATGTTATTTATAGGCCAATCGATATTAACCAGTAAATTGCTTAGTCTAATA-GTATACACTTCACCAATAGCAGCAATTATCCAAGTAAATCTTTCATCTTCAGTCA---TCTGTGGGAAAATTATATTGGGAGAAACT-GTAGCAA--------------GAACATAAACATTTCTGCTTTCTATTTTC-AGTCAGGAAAGAAGCCACTTTTTTAAAAGATTTACATTTCCC--AAAAAAATGAATAATTAAGATGGTGAGGC-TTTGCTTTATTTTTAATAGTTGTCATCTAGTGTGAGACATAGAAAACAAGTCCTAGAAT---ATGAAATCATAGCAAAAGCTGAAGGCTTTTTATATGACATGTTTTACTATTTTTAATCATTTATGGAGTACTTTATATTTGCAAAGTCCTTGCAAATAATTTTATT-GCACATGTAAATGTTTTATTGGTGGCGAGTATCTATACATAGTGGGTATAAACTGAGATGGGAGCCTTTACTGTGGAATATTTCTTACTTGTTTAAAAAATA i aotNan1.NW_018507213v1 C 0 I 198 s micMur3.chr8 2615020 566 - 159902609 GTTGTTCTGACGT-CTAGAAAATTGGCTATCAGGTTAGTATAAGTTTGTTTAGATATGACTGCATGTTATTTATAGACCAATCAATATTAATCAGAAAATTGCTTAGCCTAATA-GTGCACACTTAATCAATAGCAGCAATTATCCAAGTAAATCTTTTATATTCAGTCA---TCTATGGACATATTTTATTGAGAGAAGCT-GTAATAG--------------GAGCATAAACATTTCTGCTTTCTATTTTTCAGTCAGGAGAGAAGCCACTTTTT-AAAAGATTTACATTTGC---AAAAAAACGAACAATTAAGATGGT-AGGTTTTTGCTTCATTTTTAAGAGTAGTGGTCTAATTTGAGATATAGAAAATACATCCTAGTAT---ATGAAATCATAGCAAGAGCTGAAGGCTTTTTATGTGATGTATTTTACTATTTTTAATCATTTATGGAACACTTTGTATTTGCAAAGTCCTTGCAAGTAATTTTATT-ATACATTTAAATATTTTATTGGT-GTGAGTATCTATACATATGGCATGTAAAATGAGAT---AGCCTTTACTGTGTTATATTTCATATTTGTTTCAAAAATA i micMur3.chr8 I 370 C 0 s proCoq1.NW_012151163v1 926522 562 + 1238772 GTTGTTCTGACGT-CTGGAAAATTGGCTATCAGGTCAGTATAAGTTTGTTTAGATATGACTGCATGTCATTTATAGACCAATCAATATTAATCAGAAAATTGCTTAGCCTAATA-GTGCACACTTAATCAATAGCAGCAATTATCCAAGTAAATCCTTTATATTCAGTCA---TCTATGGGAAAATTTTATTGAGGGAAGCT-GTAATAG--------------GAGCATAAACATTTCTGCTTTCTATTTTTCAGTCAGAAGAGAAGCCACTTTTT-AAAAGATTTACATTTGCA--AAAAAAATGAATAATTAAGA---T-AGGTTTTTGCTTCATTTTTAAGAGTAGTGATCTAGTTTGAGATATAGAAAACACAT-GTAGTAT---ATGAAATCATAGCAAGAGCTGAAGGCTTCTTATGTGATGTATTTTGCTATTTTTAATCATTTATGGAACACTTTGTATTTGCAAAGTCCTTGCAAGTAATTTTATT-ATACATTTAAATATTTTATTGAT-----GTATCTATACATATGGGATGTAAAATGAGACAGGAGCCTTTACTGTGTTATATTTCATATTTGTTTCAAAAATA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2497653 540 + 5252280 GTTCTTCTGACTT-CTGGAAAATTGGCTGTCAGATTAGTGTAAGTT--------------TGCATGTCATTTGTAGATCAGTCAATATTAATCAGAAAATGGCTTAGGCTAAGA-GTGCATACTTAATCAATAGCAGCAATTGTCGAAGTAAATATTTTATATTCGGTCA---CCTGTGGGGAAATTTTACTGGGGGAGGCT-ATAGCAG--------------GAGCATAAACATGTCTGCTTTCTGTCTTT-AGTCAGAAGAGAAACCACTTTTT-AAAAGATT---ATTTGTA--AAAATAGTGAATAATTAAGA---T-AGGTTTTTGCATCATTTTTAATAGTAGTGATCTAGTTTGAGAAATAGAAAACACATGTTAGTATATAATAAAATCATGGCCAGAGCTAGGGGCTTTTTATAGTATGTATTTTACTATTTTAAATCATTTATGGAATACTTTGTATTTGCAAAGTCCTTCAAAGAAATGTTACTAATACAGTTAAATATTTTATTTGT-ATGAATATCTGTATATACAGGATATAAAATGAGATAGGAGCTTTTACTATGTTATATTTC-------------TAATA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91401779 486 - 120129022 AACCTTGTGACTCACTGG--GTTTGGCTGTCGTGTTAATGTAAGCTTTTTCAGATTTAAATGCATGACGTGTGTAGTCTAGTT--------------------------------------------------GTAGCAGTTGTC-----------------TCTAGTCAGCTTCTGTCGGGACCTTACGCTGGGAGGGGCTGGCAACAA--------------GGT----AATGCTTCTGCAGTCCG--CTC-ATCCAGGGAAGAAGCTACTTCC--AGAAAATTTATATTTACT--TAAAAGATAAATAATTAAGATGCT-GGGTTGTT-TTCCATTTTTATTAGCAG--GTCTAGTTTGAGAGAGAGGGGAAACAACTCAGTGT---ATGGAATCACAGTGGGCTCCATGGGGTTTTTA----AGACATTTCACTATTTTTAATCATTTAGGGAGGACTGCCTATCTGTAAATTCCTTACAAATAATTGTATT-GCACATTTAAGTGTTTTACTTATGGTGGATATCCATACAGAGTGGTTATAAAATGAGATAGAAGCCTTTACTGCATAAGAATTGTT-----TTTAAAATA-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2015263 547 + 64289059 GTCATCCTGACTC-CTGGAATATTGGCTGTCAGGTTAGTGTCAGTTTGTTGAGGTGTTGCTGCATGTCCTTTATAGACCA-TCAGCACCCATCAGCAGGTGACCTAGCCCAGTA---------------CAGAGCAGCAGCTGTCCCCGTGCGTCTTCTGTACTCACTCA---CCTGCGCGAGAATTGTATGGGGAGAAATC-GTAATAG--------------GAACATTAGTATTTCTGCTCCCTCTTTGC-ATTTAGGAAAGAAGCCACTTTTT--AAAGACTTCCATTTAC---TGAGAAATGAATGATTAAGACGAT-AGCTTTTGGCTTCATTTTTAGTAATTGTGATCTGGTTTGAGATATAGAAAACACGTCTTAGTAT---ATGAAATCATAGCAAGAGTTG-AGGCTTTTTATATGATACATTTTATTATTTTTAATCATTTATGGAGCACTTCATATTCACAGAGTACTTGCAAACAATTTTATT-ACACGTTTAAATGTTTTATTAGC-GTGGGTATCTGTACATAGTGTTCATAAAATAAGATAG-AGTCTTTACTGTGTAATAAATGTT---TGTTTCAAAAATA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 517802 556 + 2232271 GTAGTTCTGACTC-CTGGAAAATTGTCTATCAGGTTAGTAGAAGTTTTT-TAGATTTAACTATATTTCATTTATAGGCTAATCAGTATTAATCAGAAAATTTTTTAGCCTAATAAATGCACACTTAGTCAATAGTGGCAATTATCCATGTAAATGTTTTATATTCAGTCA-------CGGGAAAATTATATTGTGAGAAACT-GTAATGG--------------GAGCATAAACATTT---TCTCCTATTTTC-AGTAAGGAAAGAAGCCACTTTTTTAGATGATTTATATTTACTGAAAAAAAGTAAATAATTAAAATGGT-AGGTTTTTGCTTCATTTTTAATA---GTAATCTAGTTTGATATATAGAAAACACAACTTTCTAT---ATGAAATCTTAGCAAGAACTGAAGACTTTTTACATGATATATTTTGCTAGTTT-AATCACTTATGGAGCATTTCATATTTGCAAAGTACTTGCAAATACTTTTATT-ACACATTTAAATGTTTTATTAGTGATGAGTAT---TATATAGTTGATATAAAATAAGATAGGAGTCTTTACTGTATAATATTT---ATTTGTTTCAAAAATG i dasNov3.JH580157 C 0 C 0 e calJac3.chr14 3408155 14238 - 108792865 I a score=55471.000000 s hg38.chr2_KI270769v1_alt 18755 5 + 120616 CGTAA s panTro5.chr2A 3456073 5 + 111504155 CGTAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342844 5 + 114371477 CGTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216453 5 + 637652 CATAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015904 5 + 81552678 CGTAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275009 5 + 108979918 CATAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988096 5 - 111193037 CATAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382510 5 + 3644372 CATAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335897 5 - 10304083 CATAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419726 5 - 107702431 CATAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950584 5 + 1565135 CATAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326297 5 - 13651311 CATAA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3073928 5 - 7082604 TATAA i saiBol1.JH378218 C 0 C 0 s micMur3.chr8 2615586 5 - 159902609 TATAA i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 927084 5 + 1238772 TATGA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2498193 5 + 5252280 CATAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91402265 5 - 120129022 TGTGA i mm10.chr12 C 0 C 0 s canFam3.chr17 2015810 5 + 64289059 TATAA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 518358 5 + 2232271 TGTAA i dasNov3.JH580157 C 0 C 0 e cebCap1.NW_016107454v1 559711 158 + 5243153 I e aotNan1.NW_018507213v1 1893282 198 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=98373.000000 s hg38.chr2_KI270769v1_alt 18760 9 + 120616 GTATCCATA s panTro5.chr2A 3456078 9 + 111504155 GTATCCATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342849 9 + 114371477 GTATCCATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216458 9 + 637652 GTATCCATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015909 9 + 81552678 GTATCCATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275014 9 + 108979918 GTATCCATA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988101 9 - 111193037 GTATCCATA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382515 9 + 3644372 GTATCCATA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335902 9 - 10304083 GTATCCATA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419731 9 - 107702431 GTATCCATA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950589 9 + 1565135 GTATCCATA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326302 9 - 13651311 GTATCCATA i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 559869 9 + 5243153 GTATCCATA i cebCap1.NW_016107454v1 I 158 C 0 s micMur3.chr8 2615591 9 - 159902609 ATATTCTTA i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 927089 9 + 1238772 ATATTCATA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2498198 9 + 5252280 ATATCCATA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91402270 1 - 120129022 --------A i mm10.chr12 C 0 C 0 s canFam3.chr17 2015815 9 + 64289059 ATACTCATG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 518363 9 + 2232271 GTACGCATG i dasNov3.JH580157 C 0 C 0 e saiBol1.JH378218 3073933 0 - 7082604 C e aotNan1.NW_018507213v1 1893282 198 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=707071.000000 s hg38.chr2_KI270769v1_alt 18769 57 + 120616 ATCAGA-TCTTCCCGTTGATATGTTTTTGTGCCCACACAAATTC---AAATTGCCTTTGAG s panTro5.chr2A 3456087 57 + 111504155 ATCAGA-TCTTCCCGTTGATATGTTTTTGTGCCCACACAAATTC---AAATTGCCTTTGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342858 57 + 114371477 ATCAGA-TCTTCCCGTTGATATGTTTTTGTGCCCACACAAATTC---AAATTGCCTTTGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216467 57 + 637652 ATCAGA-TCTTCCCGTTTATATGTTTTTGTGCCGACACAAATTC---TAATTGCCTTTGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015918 57 + 81552678 ATCAGA-TTTTCCCGTTTATATGCTTTTGTACCCACACAAAGTC---TAATTGCCTTTGAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275023 60 + 108979918 ATCAGA-TTTTCCCATTTATACGTTTTTGTACCCACACAAATTCTAGTAGTTGCCTCTGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988110 57 - 111193037 ATCAGA-TTTTCCCGTTTATACGTTTTTGTACCCACACAAATTC---TAGTTGCCTCTGAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382524 57 + 3644372 ATCAGA-TTTTCCCGTTTATACGTTTTTGTACCCACACAAATTC---TAGTTGCCTCTGAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335911 57 - 10304083 ATCAGA-TTTTCCCGTTTATACTTCTTTGTACCCACACAAATTC---TAGTTGCCTCTGAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419740 57 - 107702431 ATCAGA-TTTTCCCATTTATACTTCTTTGTACCCACACAAATTC---TAGTTGCCTCTGAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950598 57 + 1565135 ATCAGA-TTTTCCCGTTTATACGTTTTTGTACCCACACAAATTC---TAGTTGCCTCTGAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326311 57 - 13651311 ATCAGA-TTTTCCCATTTATACTTTTTTGTACCCACACAAATTC---TAGTTGCCTCTGAG i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 559878 57 + 5243153 ATCAGA-TTTTCCGATTTATATGTTTTTGTACCCACACAAATTC---TAATTTCCTTTGAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1893480 57 - 1938448 ATCAGA-TTTTCCGATTTATATGTTTTTGTACCCACACAAATTC---TAATTTCCTTTGAG i aotNan1.NW_018507213v1 I 198 C 0 s micMur3.chr8 2615600 56 - 159902609 ATCAGA-TTTTATCATTTATAAA-TTTTGTACCCACACAAATTC---TAATTGCCTTTGAG i micMur3.chr8 C 0 I 2008 s proCoq1.NW_012151163v1 927098 57 + 1238772 ATCAAA-TTTTCTCATTTATAAATTTTTACACTCACACAAATTC---TAATTGCATTTGAA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2498207 52 + 5252280 ATCAGA-CTTTCTCATTTATGCATTTTTTT-----TACAAATTT---CAATTGCCTTTGAG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91402271 56 - 120129022 --CAGATTTTTCTCATGTACCTATTTTTGCCTACACACAAATTC---TAATTGACTTTCTA i mm10.chr12 C 0 C 0 s canFam3.chr17 2015824 57 + 64289059 ATCAGA-TTTTCTCATTTGTATATTTTTGCACCCACACAGATTT---TGTGTGTCTCTGAG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 518372 57 + 2232271 ACCAGA-TTTTCTCAGTCGTGTATTTTTATACCCACACAAGTTC---TAATTGCCTTTGAG i dasNov3.JH580157 C 0 C 0 e saiBol1.JH378218 3073933 0 - 7082604 C e calJac3.chr14 3408155 14238 - 108792865 I a score=176981.000000 s hg38.chr2_KI270769v1_alt 18826 15 + 120616 GTCCAT-CAAATAGAT s panTro5.chr2A 3456144 15 + 111504155 GTCCAT-CAAATAGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342915 15 + 114371477 GTCCAT-CAAATAGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216524 15 + 637652 GTCCAT-CAAATAGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015975 15 + 81552678 GTCCAA-CAAATAGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275083 15 + 108979918 GTCCAT-CAAATAGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988167 15 - 111193037 GTCCAT-CAAATAGAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382581 15 + 3644372 GTCCAT-CAAATAGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335968 16 - 10304083 GTCCATCCAAATAGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419797 15 - 107702431 GTCCAT-CAAATAGGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950655 15 + 1565135 GTCCAT-CAAATAGAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326368 15 - 13651311 GTCCAT-CAAATAGAT i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 559935 15 + 5243153 GTCCAT-CAAATAGAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1893537 15 - 1938448 GTCCAT-CAAATAGAT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 927155 15 + 1238772 ATCTGT-CAGATAGAT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2498259 15 + 5252280 ATCTGT-TAGACAGAT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91402327 15 - 120129022 ATGTGT-TAAACAGAA i mm10.chr12 C 0 C 0 s canFam3.chr17 2015881 15 + 64289059 GTCTGT-CAAATAGAT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 518429 15 + 2232271 GTCTGT-AAAATAGAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e saiBol1.JH378218 3073933 0 - 7082604 C e calJac3.chr14 3408155 14238 - 108792865 I a score=20876.000000 s hg38.chr2_KI270769v1_alt 18841 2 + 120616 AA s panTro5.chr2A 3456159 2 + 111504155 AA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342930 2 + 114371477 AA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216539 2 + 637652 AA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015990 2 + 81552678 AA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275098 2 + 108979918 AA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988182 2 - 111193037 AA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382596 2 + 3644372 AA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335984 2 - 10304083 AA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419812 2 - 107702431 AA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950670 2 + 1565135 AA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326383 2 - 13651311 AA i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 559950 2 + 5243153 AA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1893552 2 - 1938448 AA i aotNan1.NW_018507213v1 C 0 I 1 s proCoq1.NW_012151163v1 927170 2 + 1238772 AA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2498274 2 + 5252280 AA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91402342 2 - 120129022 AC i mm10.chr12 C 0 C 0 s canFam3.chr17 2015896 2 + 64289059 CA i canFam3.chr17 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e saiBol1.JH378218 3073933 0 - 7082604 C e dasNov3.JH580157 518444 0 + 2232271 C e calJac3.chr14 3408155 14238 - 108792865 I a score=11504.000000 s hg38.chr2_KI270769v1_alt 18843 1 + 120616 C s panTro5.chr2A 3456161 1 + 111504155 C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342932 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216541 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015992 1 + 81552678 C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275100 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988184 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382598 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335986 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419814 1 - 107702431 C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950672 1 + 1565135 C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326385 1 - 13651311 C i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 559952 1 + 5243153 T i cebCap1.NW_016107454v1 C 0 C 0 s proCoq1.NW_012151163v1 927172 1 + 1238772 C i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2498276 1 + 5252280 C i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91402344 1 - 120129022 C i mm10.chr12 C 0 C 0 s canFam3.chr17 2015898 1 + 64289059 C i canFam3.chr17 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e saiBol1.JH378218 3073933 0 - 7082604 C e dasNov3.JH580157 518444 0 + 2232271 C e aotNan1.NW_018507213v1 1893554 1 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=10920.000000 s hg38.chr2_KI270769v1_alt 18844 1 + 120616 A s panTro5.chr2A 3456162 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342933 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216542 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015993 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275101 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988185 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382599 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335987 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419815 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950673 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326386 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s proCoq1.NW_012151163v1 927173 1 + 1238772 A i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2498277 1 + 5252280 A i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91402345 1 - 120129022 A i mm10.chr12 C 0 C 0 s canFam3.chr17 2015899 1 + 64289059 A i canFam3.chr17 C 0 I 85 e micMur3.chr8 2615656 2008 - 159902609 I e saiBol1.JH378218 3073933 0 - 7082604 C e dasNov3.JH580157 518444 0 + 2232271 C e cebCap1.NW_016107454v1 559953 0 + 5243153 C e aotNan1.NW_018507213v1 1893554 1 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=9555.000000 s hg38.chr2_KI270769v1_alt 18845 1 + 120616 A s panTro5.chr2A 3456163 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342934 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216543 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015994 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275102 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988186 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382600 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335988 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419816 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950674 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326387 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s proCoq1.NW_012151163v1 927174 1 + 1238772 A i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2498278 1 + 5252280 A i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91402346 1 - 120129022 A i mm10.chr12 C 0 I 7 e micMur3.chr8 2615656 2008 - 159902609 I e canFam3.chr17 2015900 85 + 64289059 I e saiBol1.JH378218 3073933 0 - 7082604 C e dasNov3.JH580157 518444 0 + 2232271 C e cebCap1.NW_016107454v1 559953 0 + 5243153 C e aotNan1.NW_018507213v1 1893554 1 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=42224.000000 s hg38.chr2_KI270769v1_alt 18846 5 + 120616 ATTGA s panTro5.chr2A 3456164 5 + 111504155 ATTGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342935 5 + 114371477 ATTGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216544 5 + 637652 ATTGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3015995 5 + 81552678 ATTGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275103 5 + 108979918 ATTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988187 5 - 111193037 ATTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382601 5 + 3644372 ATTGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335989 5 - 10304083 ATTGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419817 5 - 107702431 ATTGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950675 5 + 1565135 ATTGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326388 5 - 13651311 ATTGA i colAng1.NW_012118821v1 C 0 C 0 s proCoq1.NW_012151163v1 927175 5 + 1238772 ATTGA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2498279 5 + 5252280 ATTGA i otoGar3.GL873658 C 0 I 40 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402347 7 - 120129022 I e canFam3.chr17 2015900 85 + 64289059 I e saiBol1.JH378218 3073933 0 - 7082604 C e dasNov3.JH580157 518444 0 + 2232271 C e cebCap1.NW_016107454v1 559953 0 + 5243153 C e aotNan1.NW_018507213v1 1893554 1 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=7800.000000 s hg38.chr2_KI270769v1_alt 18851 1 + 120616 G s panTro5.chr2A 3456169 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342940 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216549 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016000 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275108 1 + 108979918 G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988192 1 - 111193037 G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382606 1 + 3644372 G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335994 1 - 10304083 G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419822 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950680 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326393 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s proCoq1.NW_012151163v1 927180 1 + 1238772 G i proCoq1.NW_012151163v1 C 0 I 18 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402347 7 - 120129022 I e canFam3.chr17 2015900 85 + 64289059 I e saiBol1.JH378218 3073933 0 - 7082604 C e dasNov3.JH580157 518444 0 + 2232271 C e otoGar3.GL873658 2498284 40 + 5252280 I e cebCap1.NW_016107454v1 559953 0 + 5243153 C e aotNan1.NW_018507213v1 1893554 1 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=794841.000000 s hg38.chr2_KI270769v1_alt 18852 130 + 120616 ggccaggcgtggtggctcatgcctgtaatcccagcactttgggaggacgaggcaggcagatcac--gaggtcaagagatcaagaccatccaggccaacatggtgaaaccccgtctctagtaaaaatacaaaa s panTro5.chr2A 3456170 130 + 111504155 ggccaggcgtggtggctcatgcctgtaatcccagcactttgggaggacgaggcaggcagatcac--gaggtcaagagatcaagaccatccaggccaacatggcgaaaccccgtctctagtaaaaatacaaaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3342941 130 + 114371477 ggccaggcgtggtggctcatgcctgtaatcccagcactttgggaggacgaggcaggcagatcaa--gaggtcaagagatcaagaccatccaggccaacatggcgaaaccccgtctctagtaaaaatacaaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216550 128 + 637652 ggccaggcgtg--ggctcatgcctgtaatcccagcactttgggaggacgaggcaggcagatcac--gaggttaggagatcaagaccatccaggccaacatggcgaaaccccgtctctagtaaaaatacaaaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016001 130 + 81552678 ggccaggcacggtggcttgtgcctgtaatcccagcactttgggaggacgaggcgggcagttcac--aaggtcaagagatcaagaccatcctggccaacatggtgaaaccccgtctctagtaaaaatacaaaa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275109 130 + 108979918 ggctgggcgcggtagctcaagcctgtaatcctagcacttcgggaggacgaggcaggcagatcac--gaggtcaagagattaagaccatcctggccaacaaggtgaaaccctgtctctactaaaaacacaaaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988193 130 - 111193037 ggctgggcgcggtagctcaagcctgtaatcctagcacttcgggaggacgaggcaggcagatcac--gaggtcaagagattaagaccatcctggccaacaaggtgaaaccctgtctctactaaaaacacaaaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382607 130 + 3644372 ggctgggcgcggtagctcaagcctgtaatcctagcacttcgggaggacgaggcaggcagatcac--gaggtcaagagattaagaccatcctggccaacaaggtgaaaccctgtctctactaaaaacacaaaa i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3335995 130 - 10304083 ggcagggcgcggtggctcaagcctgtaatcctagcactttgggaggacgaggcaggcggatcac--gaggtcaagagatcaagaccatcctggccaacaaggtgaaaccccgtctctactaaaaacacaaaa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419823 130 - 107702431 ggcggggcgcggtggcttaagcctgtaatcctagcacttcgggaggacgaggcaggtggatcac--gaggtcgagagatcaagaccatcctagccaacaaggtgaaaccctgtctctactaaaaacacaaaa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950681 130 + 1565135 ggctgggcgcggtagctcaagcctgtaatcctagcacttcgggaggacgaggcaggcggatcac--gaggtcaagagattaagaccatcctggccaacaaggtgaaaccccgtctctactaaaaacacaaaa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326394 130 - 13651311 ggctgggcgcagtggctaaagcctgtaatcctagcacttcgggaggacgaggcaggcggatcac--gacgtgaagaaatcaagaccatcctggccaataaggtgaaaccccgtctctactgaaaacacaaaa i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3073933 130 - 7082604 ggccgggcatggtggctcacgcctgtaatccaaggacttt-ggaggccaaggcaggcggatcacctgaggttgggagttcaagaccagcctgaccaacatggtgaaaccccgtcttta-taaaaataaaaaa i saiBol1.JH378218 C 0 I 1303 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402347 7 - 120129022 I e canFam3.chr17 2015900 85 + 64289059 I e proCoq1.NW_012151163v1 927181 18 + 1238772 I e dasNov3.JH580157 518444 0 + 2232271 C e otoGar3.GL873658 2498284 40 + 5252280 I e cebCap1.NW_016107454v1 559953 0 + 5243153 C e aotNan1.NW_018507213v1 1893554 1 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=935428.000000 s hg38.chr2_KI270769v1_alt 18982 173 + 120616 attagctgggcgtggtggtgcacgcctgtagtcccagctactcgggaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagccaagatcacgccactgcacttcagcct-ggccacagagcgagactccatctcaaaaacaaataaaatgaaataaaa s panTro5.chr2A 3456300 173 + 111504155 attagctgggcgtggtggtgcacgcctgtagtcccagctaccagggaggctgaggcaggagaatgggttgaacccaggaggcggaggttgcagtgagccaagatcacgccactgcacttcagcct-ggcgacagagcgagactccatctcaaaaacaaataaaatgaaataaaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343071 173 + 114371477 attagctgggcatggtggtgcacgcctgtagtcccagctactcgggaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagccaagatcacgccactgcactttagcct-ggcgacagagcgagactccatctcaaaaacaaataaaatgaaataaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216678 172 + 637652 attagctgggcgtggtggtgcacgcctgtagtcccagctactcgggaggctgaggcaggagaatggcttgaacccagaaggcgga-gttgcagtgagccaagatcatgccactgcacttcagcct-ggcaacagagcgagactccatctcaaaaacaaataaaatgaaataaaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016131 173 + 81552678 attagctgggcgtggtggtgcacgcctgtagtcccagctactcgggaggctgaggcaagagaatggcttgaacccaggaggcagaggttgcagtgagctgagatcacgccactgcacttcagcct-ggcgacagagcgagactctgtctcaaaaacaaataaaatgaaataaaa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275239 169 + 108979918 attagccaggcgtggtggtgcacgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagctgagatcacaccactgcacttcagcctgggcaacagagcaagactccgtctcagaaacaaata-----aaataaaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988323 169 - 111193037 attagccaggcgtggtggtgcacgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagctgagatcacaccactgcacttcagcctgggcaacagagcaagactccgtctcagaaacaaata-----aaataaaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382737 169 + 3644372 attagccaggcgtggtggtgcacgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagctgagatcacaccactgcacttcagcctgggcaacagagcaagactccgtctcagaaacaaata-----aaataaaa i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336125 169 - 10304083 attagccaggcgtggtggtgcacgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagctgagatcacaccactgcacttcagcctgggcaacagagcaagactccgtctcagaaacaaata-----aaataaaa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3419953 166 - 107702431 attagtcaggcgtggtggtgcatgcctgtagtcccagctattcgggaggctgtggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagatcacgc--ctgcacttcagcctgggcaacagagcgagactccgtc-cagaaacaaata-----aaataaaa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950811 169 + 1565135 attagccaggcgtggtggtgcacgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagctgagatcacaccactgcacttcagcctgggcaacagagcaagactccgtctcagaaacaaata-----aaataaaa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326524 169 - 13651311 attagccaggcgtggtggtgcacacctgtagtcccaggtactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagctgagatcacgccacagcacttcagcctgggcaacagagcaagactccatctcagaaacaaata-----aaataaaa i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402347 7 - 120129022 I e canFam3.chr17 2015900 85 + 64289059 I e saiBol1.JH378218 3074063 1303 - 7082604 I e proCoq1.NW_012151163v1 927181 18 + 1238772 I e dasNov3.JH580157 518444 0 + 2232271 C e otoGar3.GL873658 2498284 40 + 5252280 I e cebCap1.NW_016107454v1 559953 0 + 5243153 C e aotNan1.NW_018507213v1 1893554 1 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=21996.000000 s hg38.chr2_KI270769v1_alt 19155 3 + 120616 aac s panTro5.chr2A 3456473 3 + 111504155 aac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343244 3 + 114371477 aac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216850 3 + 637652 aac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016304 3 + 81552678 aac i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275408 3 + 108979918 aac i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988492 3 - 111193037 aac i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382906 3 + 3644372 aac i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336294 3 - 10304083 aac i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420119 3 - 107702431 aac i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950980 3 + 1565135 aac i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326693 3 - 13651311 aac i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 518444 3 + 2232271 AAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402347 7 - 120129022 I e canFam3.chr17 2015900 85 + 64289059 I e saiBol1.JH378218 3074063 1303 - 7082604 I e proCoq1.NW_012151163v1 927181 18 + 1238772 I e otoGar3.GL873658 2498284 40 + 5252280 I e cebCap1.NW_016107454v1 559953 0 + 5243153 C e aotNan1.NW_018507213v1 1893554 1 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=191128.000000 s hg38.chr2_KI270769v1_alt 19158 22 + 120616 aaaTTGAGTTCACTGGGCTTTG s panTro5.chr2A 3456476 22 + 111504155 aaaTTGAGTTCACTGGGCTTTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343247 22 + 114371477 aaaTTGAGTTCACTGGGCTTTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216853 22 + 637652 aaaTTGAGTTCACTGGGCTTTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016307 22 + 81552678 aaaTTGAGTTCACTGGGCATTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275411 22 + 108979918 aaaTTGAGTTCACTGGGCGTTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988495 22 - 111193037 aaaTTGAGTTCACTGGGCGTTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382909 22 + 3644372 aaaTTGAGTTCACTGGGCGTTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336297 22 - 10304083 aaaTTGAGTTCACTGGGCGTTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420122 22 - 107702431 aaaTTGAGTTCACTGGGCATTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 950983 22 + 1565135 aaaTTGAGTTCACTGGGCGTTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326696 22 - 13651311 aaaTTGAGTTCACTGGGCGTTG i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 559953 22 + 5243153 AAATTGAGTTCACTGGGCATTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1893555 22 - 1938448 AAACTGAGTTCACTGGGCATTG i aotNan1.NW_018507213v1 I 1 C 0 s dasNov3.JH580157 518447 22 + 2232271 AAATTGAGTTTACTGGAATTAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402347 7 - 120129022 I e canFam3.chr17 2015900 85 + 64289059 I e saiBol1.JH378218 3074063 1303 - 7082604 I e proCoq1.NW_012151163v1 927181 18 + 1238772 I e otoGar3.GL873658 2498284 40 + 5252280 I e calJac3.chr14 3408155 14238 - 108792865 I a score=13903.000000 s hg38.chr2_KI270769v1_alt 19180 3 + 120616 -TGT s panTro5.chr2A 3456498 3 + 111504155 -TGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343269 3 + 114371477 -TGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216875 3 + 637652 -TGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016329 3 + 81552678 -TGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275433 3 + 108979918 -TAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988517 3 - 111193037 -TAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382931 3 + 3644372 -TAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336319 3 - 10304083 -TAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420144 3 - 107702431 -TAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951005 3 + 1565135 -TAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326718 3 - 13651311 -TAT i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 559975 3 + 5243153 -CAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1893577 3 - 1938448 -TAT i aotNan1.NW_018507213v1 C 0 C 0 s mm10.chr12 91402354 3 - 120129022 -TGT i mm10.chr12 I 7 C 0 s dasNov3.JH580157 518469 3 + 2232271 ACA- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e canFam3.chr17 2015900 85 + 64289059 I e saiBol1.JH378218 3074063 1303 - 7082604 I e proCoq1.NW_012151163v1 927181 18 + 1238772 I e otoGar3.GL873658 2498284 40 + 5252280 I e calJac3.chr14 3408155 14238 - 108792865 I a score=214634.000000 s hg38.chr2_KI270769v1_alt 19183 22 + 120616 GGCATCACAGAATTGAACATCA s panTro5.chr2A 3456501 22 + 111504155 GGCATCACAGAATTGAACATCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343272 22 + 114371477 GGCATCACAGAATTGAACATCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216878 22 + 637652 GTCATCACAGAATTGAACATCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016332 22 + 81552678 GGCATCACAGAATTGAACATCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275436 22 + 108979918 GGCATCACAGAATTGAGCATCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988520 22 - 111193037 GGCATCACAGAATTGAGCATCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382934 22 + 3644372 GGCATCACAGAATTGAGCATCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336322 22 - 10304083 GGCATCACAGAATTGAGCATCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420147 22 - 107702431 GACATCACAGACTTGAACATCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951008 22 + 1565135 GGCATCACAGAATTGAGCATCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326721 22 - 13651311 GGCATCACAGAATTGAACATCA i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 559978 22 + 5243153 GGCATCAGAGAATTTAAAATCG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1893580 22 - 1938448 GGCATCAGAGAATTGAAAATCA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 927199 22 + 1238772 GGCATCAGGGAACTGAACATCG i proCoq1.NW_012151163v1 I 18 C 0 s mm10.chr12 91402357 22 - 120129022 GGCATAATAAAACTTAGCATGA i mm10.chr12 C 0 C 0 s dasNov3.JH580157 518472 22 + 2232271 AGCATCAGGGAATTGAATACCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e canFam3.chr17 2015900 85 + 64289059 I e saiBol1.JH378218 3074063 1303 - 7082604 I e otoGar3.GL873658 2498284 40 + 5252280 I e calJac3.chr14 3408155 14238 - 108792865 I a score=252250.000000 s hg38.chr2_KI270769v1_alt 19205 23 + 120616 GGAGATTCCATATCTACTGTATC s panTro5.chr2A 3456523 23 + 111504155 GGAGATTCCATATCTACTGTATC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343294 23 + 114371477 GGAGATTCCATATCTACTGTATC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216900 23 + 637652 GGAGATTCCATATCTACTGTATC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016354 23 + 81552678 GGAGATTGCATATCTACTGCATC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275458 23 + 108979918 GGAGATTCCATATCTACTGTATC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988542 23 - 111193037 GGAGATTCCATATCTACTGTATC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382956 23 + 3644372 GGAGATTCCATATCTACTGGATC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336344 23 - 10304083 GGAGATTCCATATCTACTGTATC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420169 23 - 107702431 GGAGATTCCATATCTACTGTATC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951030 23 + 1565135 GGAGATTCCATATCTACTGTATA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326743 23 - 13651311 GGAGATTCCATATCTACTGTATC i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 560000 23 + 5243153 GGAGAGTCTGTGTTTACTATATT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1893602 23 - 1938448 GGAGATTCTATATTTACTATATT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 927221 23 + 1238772 GGAGATTTCATATCTATTGTATC i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2498324 23 + 5252280 GGAGACTTCATATCTGCTATATC i otoGar3.GL873658 I 40 C 0 s mm10.chr12 91402379 23 - 120129022 GGAAATTCAGTATCTGCTAcagt i mm10.chr12 C 0 C 0 s dasNov3.JH580157 518494 23 + 2232271 AGAAATTCATTATCCACTATATC i dasNov3.JH580157 C 0 I 1 e micMur3.chr8 2615656 2008 - 159902609 I e canFam3.chr17 2015900 85 + 64289059 I e saiBol1.JH378218 3074063 1303 - 7082604 I e calJac3.chr14 3408155 14238 - 108792865 I a score=460.000000 s hg38.chr2_KI270769v1_alt 19228 1 + 120616 A s panTro5.chr2A 3456546 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343317 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216923 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016377 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275481 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988565 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382979 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336367 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420192 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951053 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326766 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 560023 1 + 5243153 G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1893625 1 - 1938448 G i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 927244 1 + 1238772 C i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2498347 1 + 5252280 T i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91402402 1 - 120129022 c i mm10.chr12 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e canFam3.chr17 2015900 85 + 64289059 I e saiBol1.JH378218 3074063 1303 - 7082604 I e dasNov3.JH580157 518517 1 + 2232271 I e calJac3.chr14 3408155 14238 - 108792865 I a score=198517.000000 s hg38.chr2_KI270769v1_alt 19229 22 + 120616 AAATCCTTTT--GTTTTTCAGAAA---- s panTro5.chr2A 3456547 22 + 111504155 AAATCCTTTT--GTTTTTCAGAAA---- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343318 22 + 114371477 AAATCCTTTT--GTTTTTCAGAAA---- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216924 22 + 637652 AAATCCTTTT--GTTTTTCAGAAA---- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016378 22 + 81552678 AAATCCTTTT--ATTTTTCAGAAA---- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275482 22 + 108979918 AAATCCTTTT--ATTTTTCAGAAA---- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988566 22 - 111193037 AAATCCTTTT--ATTTTTCAGAAA---- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3382980 22 + 3644372 AAATCCTTTT--ATTTTTCAGAAA---- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336368 22 - 10304083 AAATCCTTTT--ATTTTTCAGAAA---- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420193 22 - 107702431 GAATCCTTTT--ATTTTTCAGAAA---- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951054 15 + 1565135 -------TTT--ATTTTTCAGAAA---- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326767 22 - 13651311 AAATCCTTTT--ATTTTTCAGAAA---- i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 560024 24 + 5243153 AAATCCTTTTTACTTTTTCAGAAG---- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1893626 24 - 1938448 AAATCCTTTTTATTTTTTCAGAAA---- i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 927245 22 + 1238772 AAACCCATAT--ATTTTTCAGAAA---- i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2498348 22 + 5252280 AAGGCCTTAT--ATTTTTCAGAAA---- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91402403 22 - 120129022 atcccttggt--atccctcagaga---- i mm10.chr12 C 0 I 3245 s dasNov3.JH580157 518518 25 + 2232271 AAATCCTTA---ATTTTTCAGGGGAAAA i dasNov3.JH580157 I 1 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e canFam3.chr17 2015900 85 + 64289059 I e saiBol1.JH378218 3074063 1303 - 7082604 I e calJac3.chr14 3408155 14238 - 108792865 I a score=45387.000000 s hg38.chr2_KI270769v1_alt 19251 9 + 120616 A---ACCC-AAAA s panTro5.chr2A 3456569 9 + 111504155 A---ACCC-AAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343340 9 + 114371477 A---ACCC-AAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216946 9 + 637652 A---ACCC-AAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016400 9 + 81552678 A---TCCC-AAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275504 10 + 108979918 A---ACCCAAAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988588 10 - 111193037 A---ACCCAAAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3383002 10 + 3644372 A---ACCCAAAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336390 10 - 10304083 A---ACCCAAAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420215 10 - 107702431 A---ACCCAAAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951069 10 + 1565135 A---ACCCAAAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326789 10 - 13651311 A---ACCCAAAAA i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 560048 10 + 5243153 A---ACCCAGAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1893650 10 - 1938448 A---ACCCAAAAA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 927267 13 + 1238772 AAACAAAACAAAA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2498370 10 + 5252280 A---AAAGAAAAA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 518543 5 + 2232271 A---ACCT----- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2015900 85 + 64289059 I e saiBol1.JH378218 3074063 1303 - 7082604 I e calJac3.chr14 3408155 14238 - 108792865 I a score=529854.000000 s hg38.chr2_KI270769v1_alt 19260 55 + 120616 CTTTGCTTATGCTTTAGCTGCTATACTTAGTAGTAACTTACACCTTCCATACTTG- s panTro5.chr2A 3456578 55 + 111504155 CTTTGCTTATGATTTAGCTGCTATACTTAGTAGTAACTTACACCTTCCATACTTG- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343349 55 + 114371477 CTTTGCTTATGATTTAGCTGCTATACTTAGTAGTAACTTACACCTTCCATACTTG- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 216955 52 + 637652 CTTTGCTTATGCTTTAGCTGCTGTACTTAGTAGTAACTTACACCTTCCATAC---- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016409 52 + 81552678 CTTTGCTTATGCTTTAGCTGCTGTACTTAGTAGTAACTTACACCTTCCATAC---- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275514 55 + 108979918 CCTTGCTTATGCTTTAGCTGCTGTACTTAGTAGTAACTTACACCTTCCATACTTG- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988598 55 - 111193037 CCTTGCTTATGCTTTAGCTGCTGTACTTAGTAGTAACTTACACCTTCCATACTTG- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3383012 55 + 3644372 CCTTGCTTATGCTTTAGCTGCTGTACTTAGTAGTATCTTACACCTTCCATACTTG- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336400 55 - 10304083 CCTTGCTTACGCTTTAGCTGCTGTACTTAGTAGTAACTTACACCTTCCATACTTG- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420225 55 - 107702431 CTTTGCTTATGCTTTAGCTGCTGTACTTAGTAGTAACTTACACCTTCCATACTTG- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951079 55 + 1565135 CCTTGCTTATGCTTTAGCTGCTGTACTTAGTAGTAACTTACACCTTCCATACTTG- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326799 55 - 13651311 CTTTGCTTATGCTTTAGCTGCTGTACTTAGTAGTAACTTACACCTTCCATACTTG- i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 560058 49 + 5243153 C------TATGCTTTAGTGGCTGTACTTAATAGCGATTTACATCCTCCATACTTG- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1893660 55 - 1938448 CTTTGCTTAAGCTTTAGCGGCTGTACTTAATAGTAATTTACGTCTTCCATACTTG- i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 927280 55 + 1238772 CTTTCCTCCTGCTTTAGCCGCCACACTTATTAGTAACTTACACCTTCCATGCTTG- i proCoq1.NW_012151163v1 C 0 I 2860 s otoGar3.GL873658 2498380 55 + 5252280 CTTTCCTCACGATTTAGCTGCCATGCTTAGTAGTAACATGAGCCTTTCCTCCTAG- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2015985 51 + 64289059 CTTTCCTCATGCTCTCGCAGCCGTACTTCAT---GACTTATACC-TCCATACTTG- i canFam3.chr17 I 85 I 3 s dasNov3.JH580157 518548 53 + 2232271 CTTTCCATGTACTTTAGCTATCAGACTCAGTAGG---TCATATCTCCTATATTTGG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e saiBol1.JH378218 3074063 1303 - 7082604 I e calJac3.chr14 3408155 14238 - 108792865 I a score=1271318.000000 s hg38.chr2_KI270769v1_alt 19315 161 + 120616 TTGTGAAAATGCTGTATTATTTCAACCAGCCTGAATTTGGTTCCTGCATGTCAAGCAC--TGTTCTAGGTACAGAGA----------------------CTGAGGGC-GTCACTG---TGTG-------GAGAGAAGT-GACATGCACACGGTTGATTTCTGACAGGCCAGGACATCAAAGCGCTGTCTGCATGAGT-- s panTro5.chr2A 3456633 160 + 111504155 TTGTGAAAATGCTGTATTATTTCAACCAGCCTGAATTTGGTTCCTGCATGTC-AGCAC--TGTTCTAGGTACAGAGA----------------------CTGAGGGC-GTCACTG---TGTG-------GAGAGAAGT-GACATGCACACGGTTGATTTCTGACAGGCCAGGACATCAAAGCGCTGTCTGCATGAGT-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343404 161 + 114371477 TTGTGAAAATGCTGTATTATTTCAACCAGCCTGAATTTGGTTCCTGCATGTCAAGCAC--TGTTCTAGGTACAGAGA----------------------CTGAGGGC-GTCACTG---TGTG-------GAGAGAAGT-GACATGCACACGGTTGATTTCTGACAGGCCAGGACATCAAAGCGCTGTCTGCATGAGT-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 217007 161 + 637652 TTGTGAAAATGCTGTATTATTTCAACCAGCATGAATTTCGTTCCTGCATGTCAAGCAC--TGTTCTAGGTACAGAGA----------------------CTGAAGGC-GTCACTG---TGTG-------GAGAGAAGT-GACATGCACACTGTTGATTTCTGACAGGCCAGGACATCAAAGCGCTGTCTGCATGAGT-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016461 161 + 81552678 TTGTGAAAATGCTGTATTATTTCAACCAGCATGAATTTGGTTCCTGCATATCAAGCAC--TGTTCTAGGTCCAGAGA----------------------CTGAGGGC-GTCACTG---TGTG-------GACAGAAGT-GACATGCGCACGGTTGATTTCTGACAGGCCAGGACATCAAAGTGCTGTCTGCATGAGT-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275569 181 + 108979918 TTGTGAAAATGCTGTATTATTTTAA-CAGCATCAATTTGGTTCCTGCATATCAAACAC--TGTTCTAGGTACAGAGATGGGATAGAGACGATCCT--CTCGGAGGGC-ATCACTG---CGTG-------GACAGAAGTGGACACGCACACGGTTGATTTCTGACAGGCCAGGCCATCAAAGCCCTGTCTGCATGAGT-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988653 181 - 111193037 TTGTGAAAATGCTGTATTATTTTAA-CAGCATCAATTTGGTTCCTGCATATCAAACAC--TGTTCTAGGTACAGAGATGGGATAGAGACGATCCT--CTCTGAGGGC-ATCACTG---CGTG-------GACAGAAGTGGACACGCACACGGTTGATTTCTGACAGGCCAGGCCATCAAAGCCCTGTCTGCATGAGT-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3383067 181 + 3644372 TTGTGAAAATGCTGTATTATTTTAA-CAGCATCAATTTGGTTCCTGCATATCAAACAC--TGTTCTAGGTACAGAGATGGGATAGAGACGATCCT--CTCTGAGGCC-ATCACTG---CGTG-------GACAGAAGTGGACGCGCACACGGTTGATTTCTGACAGGCCAGGCCATCAAAGCCCTGTCTGCATGAGT-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336455 181 - 10304083 TTGTGAAAATGCTGTATTATTTTAA-CAGCATCAGTTTGGTTCCTGCATATCAAACAC--TGTTCTAGGTACAGAGATGGGGTAGAGACGATCCT--CTCTGAGGGC-ATCACTG---CGTG-------GACAGAAGTGGACACGCACACGGTTGATTTCTGACAGGCCAGGCCATCAGAGCCCTGTCTGCATGAGT-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420280 181 - 107702431 TCATGAAAATGCTGTATTATTTTAA-CAGCATCAATTTGGTTCCTGCATATCAAGCAC--TGTTCTAGGTACAGAGATGGGGTAGAGACGATCCT--CTCTGAGGGG-ATCACTG---CGTG-------GACAGAAGTGGACATGCACACGGTTGATTTCTGACAGGCCAGGACATCAAAGCCCTGTCTGCATGAGT-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951134 181 + 1565135 TTGTGAAAATGCTGTATTATTTTAA-CAGCATCAGTTTGGTTCCTGCATATCAAACAC--TGTTCTAGGTACAGAGATGGGGTAGAGACGATCCT--CTCTGAGGGC-ATCACTG---CGTG-------GACAGAAGTGGACACGCACACGGTTGATTTCTGACAGGCCAGGCCATCAGAGCCCTGTCTGCATGAGT-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3326854 182 - 13651311 TTGTGAAAATGCTGTATTATTTTAACCAGCATCAATTTGGTTCCTGCATATCAAGCAC--TGTTCTAGGTATAGAGATGGGGTAGAGACGATCCT--CTCTGAGGGC-ATCACTG---CGTG-------GACAGAAGTAGACACGCACACGGTTGATTTCTGACAGGCCAGGACATCAAAGCCCTGTCTGCATGAGT-- i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 560107 181 + 5243153 TTGTGAAAATGCTGTATTACTTCAGCCAGCATGACTTTGGTTCCTGCACATCGAGCAC--TGTTCTAGGTACAGAGATGGGGTAGGGTTGATCCC--GTCTGAGGCT-GCCGCTG---TGTA-------GACAGCAGTGGACGTGCACACGGTTGGTTTCTCAAAGGCCAGGACATCAAAGCCCTGTCTGCCTGAG--- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1893715 182 - 1938448 TTGTGAAAATGCTGTATTACTTCAGCCAGCATGAATTTGGTTCCTGCATATCAAGCAC--CGTTCTAGGTACAGAGATGGGGTAGGGATGATTCT--CTCTGAGGCT-GCCACTG---TGTA-------GACAGCAGTGGACGTGcacacagttggtttctaaaaggccaggacatcaaagccctgtctgcctgagt-- i aotNan1.NW_018507213v1 C 0 I 23 s otoGar3.GL873658 2498435 175 + 5252280 ATGTGAAGGTACTATATTATTCTGACAAGTGTGAATTTGGTTCCCGCATGTCCTGTAC--TG-TCCAAGTACAGGAGAGGAGAGGAG-------------TGAGGTG-GCCTCTC---TGTGCCATCACAGCAGATGGGGACGTGCACACAACCCCTTGCTAAAAAGCCAAGAGGTCAGAGCCC--CCTGCATATAC-- i otoGar3.GL873658 C 0 I 6 s canFam3.chr17 2016039 152 + 64289059 TTTTTAAA-----GTTTTATTTCAACAAGCATTGGTTTGGTTCCTGCATG--AAGCAT--GGTTCAAGGT-CATAGG---------------------TCATAGGTC-CGTCCTC---TGCG------GGACGGAGGCAGATGTGCACACCATCCGTGTCTAGATAGCCACCACATGCTGGCCTTGTCTGTGT------ i canFam3.chr17 I 3 C 0 s dasNov3.JH580157 518601 183 + 2232271 TTTTTAAAAAAATGTCTTATttcagcaagcattaatttaatacctgcatatcaggcactttgttccagttacaaagatggagggcatatgtttcctgctctgaaagcagtcagtgtcatggg-------aggggaaatggacatatGCGCACGCCGCTTCTAAGAGACT-----GTTAAGAC----TCCGTACAAGTGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e saiBol1.JH378218 3074063 1303 - 7082604 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=79023.000000 s hg38.chr2_KI270769v1_alt 19476 14 + 120616 ---------------GCTGATCCATCATT----- s panTro5.chr2A 3456793 14 + 111504155 ---------------GCTGATCCATCATT----- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343565 14 + 114371477 ---------------GCTGATCCATCATT----- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 217168 14 + 637652 ---------------GCTGATCCATCATT----- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016622 14 + 81552678 ---------------GCTGATCCATCATT----- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275750 14 + 108979918 ---------------GCTGATCCATCATT----- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988834 14 - 111193037 ---------------GCTGATCCATCATT----- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3383248 14 + 3644372 ---------------GCTGATCCATCATT----- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336636 14 - 10304083 ---------------GCTGATCCATCATT----- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420461 14 - 107702431 ---------------GCTGATCCATCATT----- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951315 14 + 1565135 ---------------GCTGATCCATCACT----- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327036 14 - 13651311 ---------------GCTGATCCATCATT----- i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2498616 14 + 5252280 ---------------GCTGTTCAGTAGGT----- i otoGar3.GL873658 I 6 I 9 s canFam3.chr17 2016191 14 + 64289059 ---------------GTTGTCCCCACGTG----- i canFam3.chr17 C 0 I 4 s dasNov3.JH580157 518784 34 + 2232271 ATTATCCCATAAGAGTCTCATCTACAACTGTGCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e saiBol1.JH378218 3074063 1303 - 7082604 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e cebCap1.NW_016107454v1 560288 0 + 5243153 C e aotNan1.NW_018507213v1 1893897 23 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=869313.000000 s hg38.chr2_KI270769v1_alt 19490 110 + 120616 ATTTTTTCATTCACAAAACTC-TTTTTTCCTCCCTTCACAAATAGCAAGTTCCTGTATCTAAAAGAGAAAAGAAAAACTGAAAAAAAGATTGCTTATATAACCACTGTCCT s panTro5.chr2A 3456807 109 + 111504155 ATTTTTTCATTCACAAAACTC--TTTTTCCACCCTTCACAAATAGCAAGTTCCTGTATCTAAAAGAGAAAAGAAAAACTGAAAAAAAGATTGCTTATATAACCACTGTCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343579 109 + 114371477 ATTTTTTCATTCACAAAACTC--TTTTTCCTCCCTTCACAAATAGCAAGTTCCTGTATCTAAAAGAGAAAAGAAAAACTGAAAAAAAGATTGCTTATATAACCACTGTCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 217182 110 + 637652 ATTTTTTCATTCACAAAACTC-TTTTTTCCTCCCTTCACAAATAGCAAGTTCCTGTATCTAAAAGAGAAAAGAAAAACTGAAAAAAAGATTGCTTATATAACCACTGTCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016636 108 + 81552678 ATTTTTTCATTCACAAAACT---TTTTTCCTCCCTTCACAAATAGCAAGTTTCTGTGTCTAAAAGAGAAAAGAAAAATTGAAAAAAAGATTGCTTATATAACCACTGTCCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275764 111 + 108979918 GTTTCTTAATTCACAAAACTCTTTTTTTCCTGCCTTCACAAATAGCAAGTTCCTGTATCTGAAAGAGAAAAGAAAAATGGAAAAAAAGATTGCTTATGTAACCACTGTCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988848 111 - 111193037 GTTTCTTAATTCGCAAAACTCTTTTTTTCCTGCCTTCACAAATAGCAAGTTCCTGTATCTGAAAGAGAaaagaaaaatggaaaaaaagattgcttatgtaaccactgtcct i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3383262 111 + 3644372 GTTTCTTAATTCACAAAACTCTTTTTTTCCTGCCTTCACAAATAGCAAGTTCCTGTATCTGAAAGAGAAAAGAAAAATGGAAAAAAAGATTGCTTATGTAACCACTGTCCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336650 111 - 10304083 GTTTTTTAATTCACAAAACTCTTTTTTTCCTGCCTTCACAAATAGCAAGTTCCTGTATCTgaaagagaaaagaaaaagtaaaaaaaagaTTGCTTATGTAACCACTGTCCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420475 111 - 107702431 GTTTTTTAATTCACAAAACTCTTTTTTTCCTGCCTTAACAAATAGCAAGTTCCTGTATCTGaaagagaaaagaaaaattgaaaaaaagattgcttatgtaaccactattat i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951329 111 + 1565135 GTTTTTTAATTCACAAAACTCTTTTTTTCCTGCCTTCACAAGTAGCAAGTTCCTGTATCTGAAAGAGAAAAGAAAAAGTGAAAAAAAGATTGCTTATGTAACCACTGTCCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327050 111 - 13651311 ATTTTTTAATTCACAAAACTCTTTTTTTCCTGCCTTCACAAATAGCAAGTTCCTGTATCTGAAAGAGAAAAGAAAAATTGAAAAAAAGATTGCTTATGTAACCACTGTCCT i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 560288 102 + 5243153 ----TTTAATTCACAAAACTC-TTTTTTCCTGCATTCACAAATAGCAAGTTTCTGTATCAAAA--AGAAAAGAAACATTGAAAAAC--ATTGCTTATATAACCACTGTTCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1893920 108 - 1938448 ATTTTTTAATTCACAAAACTC-TTTTTTCTTGCCTTCACAAATAGCAAGTTTCTGTATCAAAAAGAGAAAAGAAACATTGAAAACC--ATGGCTCATATAGCCACTGTTCT i aotNan1.NW_018507213v1 I 23 C 0 s otoGar3.GL873658 2498639 104 + 5252280 GTCTTTTAATTTGCAAACTTC-TTTATTCCTGATTTTACAAATAGCAAGTTCT--TACCTGCTCCAGAAAAACTATGGGGGAAA----ATTGTTTACTTAACCATTGTCCT i otoGar3.GL873658 I 9 I 5081 s canFam3.chr17 2016209 93 + 64289059 GTCGTCTGATTCACAAACCTC--TGGTCCCTCCTTTTACAAACAGCATGTTCTTAATTC-----------AGAAAAATGGAGAAGAAA-----TTGTataaccactgtcgg i canFam3.chr17 I 4 C 0 s dasNov3.JH580157 518818 99 + 2232271 ATCCTTTAATTAGCAAACCTT-TTTTTTCCTGATTTTATAACGAGCACATTATTTTCCTTCAT-----------AAACTCTTTAAAGCTTCATTTATATAACCACAGCCTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e saiBol1.JH378218 3074063 1303 - 7082604 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=586083.000000 s hg38.chr2_KI270769v1_alt 19600 74 + 120616 TTTACATTTTAGTGTATGTGT-----------TATACGTA--TGTGTGTGCATATCTATACTATACATAGTGTGCATGTATGAAGAT---- s panTro5.chr2A 3456916 74 + 111504155 TTTACATTTTAGTGTATGTGT-----------TATACGTA--TGTGTGTGCATATCTATACTATACATAGTGTGCATGTATGAAGAT---- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343688 74 + 114371477 TTTACATTTTAGTGTATGTGT-----------TATACGTA--TGTGTGTGCATATCTATACTATACATAGTGTGCATGTATGAAGAT---- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 217292 74 + 637652 TTTACATTTTAGtgtatgtgt-----------tatacgta--tgtgtgtgcatatctatactatacatagtgtgcatgtatgaagat---- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016744 74 + 81552678 TTTACATTTTAGTGTATGTGT-----------TATACATA--TGTGTGTGCATATCTATACTATACATAGTGTGCATGTGTGAAGAT---- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275875 74 + 108979918 TTTACATTTCAgtgtatgtgt-----------tatacata--tgtgtgtgtatatatatactatgcatagtgtacatgtatgAAGAT---- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4988959 74 - 111193037 tttacatttcagtgtatgtgt-----------tatacatg--tgtgtgtgtatatatatactatgcatagtgtacatgtatgaagat---- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3383373 74 + 3644372 TTTACATTTCAgtgtatgtgt-----------tatacata--tgtgtgtgtatatatatactatgcatagtgtacatgtatgAAGAT---- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336761 74 - 10304083 TTTACATTTCAgtgtatgtgt-----------tatacgta--tgtgtgtgtatatatatactatacatagtgtacatgtatgaagat---- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420586 76 - 107702431 tctacatttcagtgtatgtgt-----------tatacatatgtgtgtgtgtatatatatactatacatagtgtacatgtatgaagag---- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951440 74 + 1565135 TTTACATTTCAgtgtatgtgt-----------tatacgta--tgtgtgtgtatatatatactatacatagtgtacatgtatgaagat---- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327161 72 - 13651311 TTTACATTTCAGtgtatgtat-----------tata--tg--tgtgtgtgtgtgtatatactatacatactgtacatgtatgaagat---- i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 560390 73 + 5243153 TTTACATTTTAGtatatgtg------------tatataca--tatgtgtgtgtatctataccatacatagtgtgcatgtatgaagat---- i cebCap1.NW_016107454v1 C 0 I 4 s aotNan1.NW_018507213v1 1894028 71 - 1938448 TCTACATTTTAGtgtatgtg------------tatatgca--ta--tgtgtgtatctatgccatacatagtgtgcatgtatgaagat---- i aotNan1.NW_018507213v1 C 0 I 356 s otoGar3.GL873658 2503824 81 + 5252280 TTTACATTTTAGcatgtatgtatgcatatacatacacata--ggtgtatacatatatatGTTACACAT----TACGTATCTGAGGAT---- i otoGar3.GL873658 I 5081 I 2 s canFam3.chr17 2016302 49 + 64289059 ttaacattt-----------------------------tg--agtgtgtgtgtgtatatagtat-------gtccacatgtgaatat---- i canFam3.chr17 C 0 I 4 s dasNov3.JH580157 518917 73 + 2232271 TTAACATTTGAGtatatg--------------tatatata--catacgaatttatatgtactat--agtgtgtatatgtatgaataaatat i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e saiBol1.JH378218 3074063 1303 - 7082604 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=328016.000000 s hg38.chr2_KI270769v1_alt 19674 56 + 120616 GGAGATACATGTTTGTGTATATATGCTTAGGCACAA---AATTCAT---A-----------------------------------------------------------------------------------TGCTTCTATCAA s panTro5.chr2A 3456990 56 + 111504155 GGAGATACATGTTTGTGTATATATGCTTAGGCACAA---AATTCAT---A-----------------------------------------------------------------------------------TGCTTCTATCAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343762 56 + 114371477 GGAGATACATGTTTGTGTATATATGCTTAGGCACAA---AATTCAT---A-----------------------------------------------------------------------------------TGCTTCTATCAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 217366 56 + 637652 ggagatacatatttgtgtatatatgCTTAGGCACAA---AATTCAT---A-----------------------------------------------------------------------------------TGCTTCTATCAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016818 56 + 81552678 GGAGACACATATTTGTGTATATATGCTTAGGCACAA---AATTCAT---A-----------------------------------------------------------------------------------TGCTTCTATCAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3275949 55 + 108979918 GGATATACATATTTGTGTATATATGC-TATGCATGA---AATTCCT---A-----------------------------------------------------------------------------------TGCTTCTATCAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989033 55 - 111193037 ggatatacatatttgtgtatatatgc-tatgcatga---aattcct---a-----------------------------------------------------------------------------------tgcttctatcag i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3383447 55 + 3644372 GGATATACATATTTGTGTATATATGC-TATGCATGA---AATTCCT---A-----------------------------------------------------------------------------------TGCTTCTATCAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336835 55 - 10304083 ggatatacatatttgtgtatatatgc-tatgcatgA---AATTCCT---A-----------------------------------------------------------------------------------TGCTTCTATCAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420662 55 - 107702431 ggatatacatatttgtgtatatatgc-tatgcatga---aattcat---a-----------------------------------------------------------------------------------tgcttctatcag i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951514 55 + 1565135 ggatatacatatttgtgtatatatGC-TATGCATGA---AATTCCT---A-----------------------------------------------------------------------------------TGCTTCTATCAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327233 55 - 13651311 ggatatacatacttgtgtatatatgc-tatgcatgA---AATTCAT---A-----------------------------------------------------------------------------------TGCTTCTATCAG i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 560467 53 + 5243153 ggatatacatatt--tgcatatatGC-TGTGCACGA---AATTCAT---A-----------------------------------------------------------------------------------TGCTTCTATCGG i cebCap1.NW_016107454v1 I 4 C 0 s otoGar3.GL873658 2503907 58 + 5252280 ATGGACATATATTTGTGTATATATAC-CATATGCAA---ATTTCATATCA-----------------------------------------------------------------------------------TGCTTATATAGT i otoGar3.GL873658 I 2 C 0 s canFam3.chr17 2016355 48 + 64289059 gcttgcatatgtgtttgtatatatac-tagacaaaacctcattcat---a------------------------------------------------------------------------------------------at--- i canFam3.chr17 I 4 C 0 s dasNov3.JH580157 518990 135 + 2232271 --gtatttatatttatatatatatCC-TACTCA-GA---AATTCAT---ATTATACTTACATATAGTTCTGTATCTTCCCCCCACACACACCCCAAGatggctccctcatctgtctcctcactttctgcttattgtctctgccca i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e saiBol1.JH378218 3074063 1303 - 7082604 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e aotNan1.NW_018507213v1 1894099 356 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=57846.000000 s hg38.chr2_KI270769v1_alt 19730 6 + 120616 TTTGTG------------- s panTro5.chr2A 3457046 6 + 111504155 TTTGTG------------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343818 6 + 114371477 TTTGTG------------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 217422 6 + 637652 TTTGTG------------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016874 6 + 81552678 TTTGTG------------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3276004 6 + 108979918 TTTATG------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989088 6 - 111193037 tttatg------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3383502 6 + 3644372 TTTATG------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336890 6 - 10304083 TTTATG------------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420717 6 - 107702431 tttatg------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951569 6 + 1565135 TTTATG------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327288 6 - 13651311 TTTATG------------- i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3075366 6 - 7082604 TTTGTG------------- i saiBol1.JH378218 I 1303 C 0 s cebCap1.NW_016107454v1 560520 6 + 5243153 tttgtg------------- i cebCap1.NW_016107454v1 C 0 I 309 s aotNan1.NW_018507213v1 1894455 6 - 1938448 TTTATG------------- i aotNan1.NW_018507213v1 I 356 C 0 s otoGar3.GL873658 2503965 6 + 5252280 TTTGTG------------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2016403 6 + 64289059 tttgta------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 519125 18 + 2232271 -ttgtgtctgatcgttgtg i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=275513.000000 s hg38.chr2_KI270769v1_alt 19736 37 + 120616 TCTTTTTATTATGTAT--------------------------------------------------------------TATATATTTAGCATTTCCCCA s panTro5.chr2A 3457052 37 + 111504155 TCTTTTTATTATGTAT--------------------------------------------------------------TATATATTTAGCATTTCCCCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343824 37 + 114371477 TCTTTTTATTATGTAT--------------------------------------------------------------TATATATTTAGCATTTCCCCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 217428 37 + 637652 TCTTTGTATTATGTAT--------------------------------------------------------------TATATATTTAGCATTTCCCCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3016880 37 + 81552678 TCTTTTTATGATGTAT--------------------------------------------------------------TATACATTTAGCATTTCCCTA i nomLeu3.chr19 C 0 I 1037 s rheMac8.chr13 3276010 41 + 108979918 TCTTTTAATTATTTAT----------------------------------------------------------TATATATATATTTAGCATTTCCCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989094 41 - 111193037 tcttttaattatttat----------------------------------------------------------tatatatatatttagcatttcccca i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3383508 41 + 3644372 TCTTTTAATTATTTAT----------------------------------------------------------TATATATATATTTAGCATTTCCCCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336896 41 - 10304083 TCTTTTAATTATTTAT----------------------------------------------------------TATATATACATTTAGCATTTCCCCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420723 39 - 107702431 tcttttaattatttat------------------------------------------------------------tatatatatttagcatttcccca i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951575 41 + 1565135 TCTTTTAATTACTTAT----------------------------------------------------------TATATATATATTTAGCATTTCCCCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327294 40 - 13651311 TCTTTTAATTATTT-T----------------------------------------------------------TATATATATATTTAGCATTTCCCCA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3075372 37 - 7082604 TCTTTTTGTTATTTGT--------------------------------------------------------------TATATATTTAGCATTTCTCCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 560835 37 + 5243153 TCTTTTTATTATTTAT--------------------------------------------------------------TATATATTTAGCATTTCTCCA i cebCap1.NW_016107454v1 I 309 C 0 s aotNan1.NW_018507213v1 1894461 37 - 1938448 TCTTTTTATTATTTAT--------------------------------------------------------------TGTTTATTTAGTATTTCTCCA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2503971 32 + 5252280 -----GTGTTATTTAT--------------------------------------------------------------CGTATCTTAGGCATTTCCCCA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2016409 33 + 64289059 tctttttaacat------------------------------------------------------------------catgtcttaagccttatccaa i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 519143 95 + 2232271 tctactcatcttctataggaggcactgggaaccaaatctgggacctcccatgtgggaggcaggtgccactcCCGTATCTTTTTATTTAACATTTT---- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=2502039.000000 s hg38.chr2_KI270769v1_alt 19773 295 + 120616 TATAAAAGGGTCTTTAAAAA-CATTTTAATAGCCACATAATCTGAAgttattgtaaataatcttaagatgaa-ctgtcttatacagaa-----ttctacatatgtgattgtttctttaggataagtcttaggaggagaattctgaagtcaa------------------aggCTGTTCATAAATACTCCCCA-TTGTCGTTCAGAAGG-TCATTCCAGGTTATGTTTTCC-ACAGC-ACCTGAGTGCACTGGCTGTAGCATCTCCTTGCCTATCCTGACTTGTATCTTTTTTT--AAA-------AAAATT------CTAATTTTTTTAGGCTAACAAT s panTro5.chr2A 3457089 295 + 111504155 TATAAAAGGGTCTTTAAAAA-CATTTTAATAGCCACATAATCTGAAgttattgtaaataatcttaagatgaa-ctgtcttatacagaa-----ttctacatatgtgattatttctttaggataagtcttaggaggagaattctgaagtcaa------------------aggCTGTTCATAAATACTCCCCA-TTGTCGTTCAGAAGG-TCATTCCAGGTTATGTTTTCC-ACAGC-ACCTGAGTGCACTGGCTGTAGCATCTCCTTGCCTATCCTGACTTGTATCTTTTTTT--AAA-------AAATTT------CTAATTTTTTTAGGCTAACAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3343861 295 + 114371477 TATAAAAGGGTCTTTAAAAA-CATTTTAATAGCCACATAATCTGAAgttattgtaaataatcttaagatgaa-ctgtcttatacagaa-----ttctacatatgtgattatttctttaggataagtcttaggaggagaattctgaagtcaa------------------aggctgttcataaatactcccca-ttgtcgttcagaagg-tcattccaggttatattttcc-acagc-aCCTGAGTGCACTGGCTGTAGCATCTCCTTGCCTATCCTGACTTGTATCTTTTTTT--AAA-------AAATTT------CTAATTTTTTTAGGCTAACAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 217465 295 + 637652 TATAAAAGGGTCTTTAAAAA-CATTTTAATAGCCACATAATCTGAAgttattataaataatcttaagatgaa-ctgtcttatacagaa-----ttctacatatgtgattatttcttcaggataagtcttaggaggagaattctgaagtcaa------------------aggCTGTTCATAAATACTCCCCA-TTGTCATTCAGAAGG-TCATTCCAGGTTATGTTTTCC-ACAGC-ACCTGAGTGCACTGGCTGTAGCATCTCCTTGCCTATCCTGACTTGTCTCTTTTTTA--AAA-------AAATTT------CTAATTTTTTTAGGCTAACAAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3017954 292 + 81552678 tattaaAGGGTCTTTAAAAACCATTTTAATAGCCACATAATCTGAAGtta---taaataatcttaggatgaa-ctgtcttatacagaa-----ttctacatatgtgatcatttctttagggtaagtcttaggaggagaattctgaagtcaa------------------aggCTGTTCATAAATACTCCCCA-TTGTCGTTCAGAATG-TCATTCCAGGTTATGTTTTCC-ACAGC-ACCTGAGTGCACTGGCTGTAGCATCTCCTTGCCTATCCTGACTTGTATCTTTTTTT--AAA-------AAATTT------CTAA-TTTTTTAGGCTAACAAT i nomLeu3.chr19 I 1037 C 0 s rheMac8.chr13 3276051 279 + 108979918 TATTAAAGGGTCTTTAAAAA-CATTTTAATAGCCACATAATCTGAAgttattataaataatcttaggaggaa-ctgtcttatacagaa-----ttctacagatgtgattatttctttaggataagtcttagaaggagaatcctgaggtcag------------------agTCTGTTCATAAATAAT-CCCA-TTGTTG-------------TTCCAGAT--TGTTTTCT-GCAGC-ACCTGAGTGCACCGGCCGTAGCATCTCCTTGCCTATCCTGTCTTGTATCTGTTTTT--AAA-------AAAAAT------CTAA-TTTTTTAGGCTAACAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989135 279 - 111193037 tattaaagggtctttaaaaa-cattttaatagccacataaCCTGAAgttattataaataatcttaggaggaa-ctgtcttttacagaa-----ttctacagatgtgattatttctttaggataagtcttagaaggagaatcctgaggtcag------------------agTCTGTTCATAAATAAT-CCCA-TTGTTG-------------TTCCAGAT--TGTTTTCT-GCAGC-ACCTGAGTGCACCGGCCGTAGCATCTCCTTGCCTATCCTGCCTTGTATCTGTTTTT--AAA-------AAAAAT------CTAA-TTTTTTAGGCTAACAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3383549 281 + 3644372 TATTAAAGGGTCTTTAAAAA-CATTTTAATAGCCACATAATCTGAAgttattataaataatcttaggaggaa-ctgtcttatacagaa-----ttctacagatgtgattatttctttaggataagtcttagaaggagaatcctgaggtcag------------------agTCTGTTCATAAATAAT-CCCA-TTGTTG-------------TTCCAGAT--TGTTTTCT-GCAGC-ACCTGAGTGCACCGGCCGTAGCATCTCCTTGCCTATCCTGCCTTGTATCTGTTTTTAAAAA-------AAAAAT------CTAA-TTTTTTAGGCTAACAAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3336937 280 - 10304083 TATTAAAGGGTCTTTAAAAA-CATTTTAATAGCCACATAATCTGAAgttattataaataatcttaggatgaa-ctgtcttatacagaa-----gtctataaatgtgattatttctttaggataagtcttagaaggagaatcctgaggtcaa------------------agTCTGTTCATAAATACT-CCCA-TTGTTG-------------TTCCAGAT--TGTTTTCT-GCAGC-ACCTGAGTGCACCGGCTGTAGCATCTCCTTGCCTATCCTGCCTTGTATCTGTTTTT-AAAA-------AAAAAT------CTAA-TTTTTTAGGCTAACAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3420762 279 - 107702431 tattaaagggtctttaaaaa-cattttaatagccacataatCTGAAgttattataaataatcttaggatgaa-ctatcttatacagaa-----gtctacagatgtgattatttctttaggataaatcttagaaggagaatcctgaggtcaa------------------agTCTGTTCATAAATACT-CCCA-TTGTTG-------------TTCCAGAT--TGTTTTCT-GCAGC-ACCTGAGTGCACCGGCTGTAGCATCTCCTTGCCTACCCTGACTTGTATCTGTTTTT-T-TA-------AAAAAT------CTAA-TTTTTTAGGCTAACAAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951616 280 + 1565135 TATTAAAGGGTCTTTAAAAA-CATTTTAATAGCCACATAATCTGAAgttattataaataatcttaggatgaa-ctgtcttatacagaa-----gtctataaatgtgattatttctttaggataagtcttagaaggagaatcctaaggtcaa------------------agTCTGTTCATAAATACT-CCCA-TTGTTG-------------TTCCAGAT--TGTTTTCT-GCAGC-GCCTGAGTGCACCGGCTGTAGCATCTCCTTGCCTATCCTGCCTTGTATCTGTTTTT-TAAA-------AAAAAT------CTAA-TTTTTTAGGCTAACAAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327334 267 - 13651311 TATTAAAGGGTCTTTAAAAA-CATTTTAATAGCCACATAATCTGAAGTTATTATAAATAATCTTAGGATGAA-CTGTCTTATACAGAA-----TTCTACAGATGTGATTATTTCT------------TTAGAAGGAGAATCCTGAGGTCAA------------------AGTCTGTTCATAAATACT-CCCA-CTGTTG-------------TCCCAGAT--TGTTTTCT-GCAGC-ACCTGAGTGCACCGGCTGTAGCATCTCCTTGCCTACCCTGACTTGTATCTTTTTTA--AAA-------AAAAAT------CTAA-TTTTTTAGGCTAACAAT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3075409 319 - 7082604 TATTAAAGTGTCTTTTAAAA-CATTTTAATAGCCAGATAATCTGAAgttgtcataaataatcttaggatgaa-ctctcttgtacagac-----ttctgcatatgtgattatttctttaggataaatctttggaggagaatcacgaggtggaagagtatggcccctttggaggccgtgaataaatactgctca-ttgccattcagaggg-tggttccagatcatgttttcc-acagt-acctgagtgtgcttgctgtagggtctccttgcttactctgacttgtatctttttaa--aaattttttttaattt------ctaa-ttttttaggctaacgat i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 560872 317 + 5243153 TATTAAAGGGTGTTTTAAAA-CATTTTAATAGCCACATAATCTGAAgttgtcataaataatcttaagatgaa-ctctcttgtacagac-----ttctacatatgtgattatttctttaggataaatctttggaggagaatcacgaggccgaagagcatggcccctttggaggctgttgataaatactgctca-ctgccgttcagaggg-cggctccagatcatgctttcc-gcagc-acctgagtgtgcttgctgtagtgtctccttgcttactctgacttgtatctttttaa--aaa--ttttttaattt------ctaa-ttttttaggctaacgat i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1894498 317 - 1938448 TATTAAAGGGTCTTTTAAAA-CATTTTAATAGCCACATAATCTGAAgttgtcataaataatcttaggatgaa-ctctcttgtacagac-----ttctacatatgtggttatttctttaggataaatctttggaggagcatcacaaggtcgaagagtgtggccactttggaggctgttgataaacactgctcc-ttgccgttcagaggg-tcgttccaggtcatgttctcc-gcaac-acccgagtgcgcttgctgtagtgtctccttgcttactctgacttgtatctttttaa--aac--ttttttaattt------ctaa-ttttttaggctaacgat i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2504003 318 + 5252280 TAGTGAAGAGTCTTTTAAAA-CATTTTAATAGCTGTATAATTTGAAgctattaaaaatatccttgggataaatccaccttgtacagaaatcttttctgcatatgtgattatccctctgggataaatcttagaaggagaattattaggccaaagagtgtggccatttttgcagttttcaatgtatgtcgctga-ctgtgt--cagaatg-attatccagtt--tacattca-tcaacaacatgaatgcacgtgctttaaggtctcctcgcctatccttacttttatc---ttta--aaA-------GCAGTTTTTCTCCTAA-TTTCTTAGGGTGACAAT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2016442 309 + 64289059 tattaaaaggtctttgcgaa-tatttt--ttattgcataatctgacgctgttataaataaccttggaacaaa-ccggcttgtacagaaatcttttctttgtatgtgattatctctttagtataaatgctgagagaacaactagcaggtcag--cgtatgggcagttttgaggctatttatacatact--------atttttcagaaagattatacctgtgtacatttaccagcagt-gtGCAAACACCCTTGCTTTAGTGTCCCCTTGTCTGCCCGAACTTAGAT--GTTTAA--GAA----TTTTATTTT------CTCA-TTTCTTAGGCAGACAGT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 519238 316 + 2232271 --TTAAAGAGTCTTTAAAAA-CATTTTAATAGCTGTGTAATGTGAGTctattataaataactttgggatgaa-ccatcttctatagaaatcttctctctatatatgattatttcttttgtataaattttagaaggggaatcactaggtcaaagaatatgggcgttttg-aggctcttaatgga-attgctcagttgtttttcagaaagattatagcagtttacatttaccagctgc-atttgagtgcat--gttttatcatatcattgtctactctgagttgtatc---CTCT--AAA-------AATTTTTTTTT-CTAA-TTTCTTAGACTAACAAT i dasNov3.JH580157 C 0 I 429 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=55202.000000 s hg38.chr2_KI270769v1_alt 20068 5 + 120616 GACAT s panTro5.chr2A 3457384 5 + 111504155 GACAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3344156 5 + 114371477 GACAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 217760 5 + 637652 GACAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3018246 5 + 81552678 GACAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3276330 5 + 108979918 GACAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989414 5 - 111193037 GACAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3383830 5 + 3644372 GACAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3337217 5 - 10304083 GACAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3421041 5 - 107702431 GACAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951896 5 + 1565135 GACAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327601 5 - 13651311 GACAT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3075728 5 - 7082604 ggcat i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 561189 5 + 5243153 ggcat i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1894815 5 - 1938448 ggcat i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2504321 5 + 5252280 GCCAT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2016751 5 + 64289059 GGCAT i canFam3.chr17 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e dasNov3.JH580157 519554 429 + 2232271 I e calJac3.chr14 3408155 14238 - 108792865 I a score=1553203.000000 s hg38.chr2_KI270769v1_alt 20073 187 + 120616 TTGct-tttt-atttgttttgctagtgaagatcaactcactagtaaattataatttgcatttctttgattactagtgtggttaattaagcattagtttattcttgtactgtcttcttgtagtgctatgaatttactgtctgttcCACAATTTTTT---------TGCATGCCAAGTGCCACACTAAAGAAATGCTTTT s panTro5.chr2A 3457389 187 + 111504155 TTGCT-TTTT-ATTTGTTTTGCTAGTGAAGATCAACTCACTAGTAAATTATAATTTGCATTTCTTTGATTACTAGTGTGGTTAATTAAGCATTAGTTTATTCTTGTACTGTCTTCTTGTAGTGCTATGAATTTACTGTCTGTTCCACAATTTTTT---------TGCATGCCAAGTGCCACACTAAAGAAATGCTTTT i panTro5.chr2A C 0 I 17153 s panPan2.chr2A 3344161 187 + 114371477 TTGCT-TTTT-ATTTGTTTTGCTAGTGAAGATCAACTCACTAGTAAATTATAATTTGCATTTCTTTGATTACTAGTGTGGTTAATTAAGCATTAGTTTATTCTTGTACTGTCTTCTTGTAGTGCTATGAATTTACTGTCTGTTCCACAATTTTTT---------TGCATGCCAAGTGCCACACTAAAGAAATGCTTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 217765 187 + 637652 TTGCT-TTTT-ATTTGTTTTGCTAGTGAAGATCAACTCACTAGTAAATTATAGTTTGCATTTCTTTGATTACTAGTGTGGTTAATTAAGCATTAGTTTATTCTTGTACTGTCTTCTTGTAGTGCTATGAATTTACTGTCTGTTCCACAATTTTTT---------TGCATGCCAAGTGCCACACTAAAGAAATGCTTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3018251 187 + 81552678 TTGct-tttt-atttgttttgctagtgaatatcaactcactagtaaattataatttgcatttctttgattactagtgtggttaattaagcattagtttattattgtactgtcttcttgtagtactatgaatttactgtctgttcCACAATTTTTT---------TGCATGCCAAGTGCCACACTAAAGAAATGCTTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3276335 166 + 108979918 TTGCT-TTTT-ATTTTTTTTGCTAGTGAAGATCAACTCACTAGTAAATTACAATTTACATTTATTTGATTACTAGCATGG----TTAAGCATTGG------------------TCTTGTAGTGCTATGAATTTACTGTCTGTTCCACAATTTTTT--------GTGCGTGCCAAGTGCCACACTAAAGAAATGCTTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989419 166 - 111193037 TTGCT-TTTT-ATTTTTTTTGCTAGTGAAGATCAACTCACTAGTAAATTACAATTTACATTTATTTGATTACTAGCATGG----TTAAGCATTGG------------------TCTTGTAGTGCTATGAATTTACTGTCTGTTCCACAATTTTTT--------GTGCGTGCCAAGTGCCACACTAAAGAAATGCTTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3383835 166 + 3644372 TTGCT-TTTT-ATTTTTTTTGCTAGTGAAGATCAACTCACTAGTAAATTACAATTTACATTTATTTGATTACTAGCATGG----TTAAGCATTGG------------------TCTTGTAGTGCTATGAATTTACTGTCTGTTCCACAATTTTTT--------GTGCGTGCCAAGTGTCACACTAAAGAAATGCTTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3337222 166 - 10304083 TTGCT-TTTT-ATTTTTTTTGCTAGTGAAGATCAACTCACTAGTAAATTACAATTTACATTTATTTGATTAGTAGCATGG----TTAAGCATTGG------------------TCTTGTAGTGCTATGAATTTACTGTCTGTTCCACAATTTTTT--------GTGCGTGCCAAGTGCCACACTAAAGAAATGCTTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3421046 166 - 107702431 TTGCT-TTTT-ATTTTTTTTGCTAGTGAAGATCAACTCACTAGCAAATTATAATTTACATGTATCTGATTACTAGCATGG----TTAAGCATTGG------------------TCTTGTAGTGCTATGAATTTACTGTCTGTTCCACAATTTTTT--------GTGCGTGCCAAGTGCCACACTAAAGAAATGCTTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 951901 166 + 1565135 TTGCT-TTTT-ATTTTTTTTGCTAGTGAAGATCAACTCACTAGTAAATTACAATTTACATTTATTTGATTACTAGCATGG----TTAAGCATTGG------------------TCTTGTAGTGCTATGAATTTACTGTCTGTTCCACAATTTTTT--------GTGCGTGCCAAGTGCCACACTAAAGAAATGCTTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327606 166 - 13651311 TTGCT-TTTT-ATTTTTTTTGCTAGTGAAGATCAACTCACTAATAAATTATAATTTACATTTATTTGATTACTAGCATGG----TTAAGCATTGG------------------TCTTGTAGTGCTATGAGTTTACTGTCTGTTCCACAGTTTTTT--------GTGCATGCCAAGTGCCACACTAAGGAAATGCTTTT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3075733 185 - 7082604 ttgct-ttttaatattttttcctagtgaagatcaacTCACTAGTAAgttataatttgcatttctttgattactagtgtgg----ttaagcattattttatTCTTGTGCTGTCTTCTTGTAGTGCTTTGAACTTACTATCTGTTCCACAATTGTTT--------GTGCATGCTGAGTGCCATACTAAGGAAAGGCTTCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 561194 185 + 5243153 ttgct-ttttaatattttttactagtgaagatcaactcactagtaagttataatttgcatttctttgattactagtgtgg----ttaagcattattttaTTCTCGTGCTATCTTCTTGTAGTACTTTGAACTTACTATCTGTTCCACAATTGTTT--------GTGCATGCCAAGTGCCATACGAAGGAAAGGCTTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1894820 183 - 1938448 ttgct-ttttaaaattttttactagtgaagatcaacTCACTAGTAAGCTATAATTTGCA--TCTTTGATTACTAGTGTGG----TTAAGTATTATTTTATTCTTGTACTATCTTCTTGTAGTGCTTTGAACTTACTATCTGTTCCACAATTGTTT--------GTGCATGCCAAGTGCCATACTAAGGAAAGGCTTTT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2504326 135 + 5252280 TTGCT-TTTT-----TTTCCACTAGTAAAGATTAACTTACAAGTACAT------------------------TAGTGTGG----TTAAATGTT---------TTTTAGCTTCTTTTTGTAG--CTTTGACGTTGCTGTCTGTTATACAATTTTTC-----------------AAATGCCATAC-AGAGAAATACTTGT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2016756 166 + 64289059 GTACTGCCTT-TTTTTTTCTGCTAGTAAAAATAAA---------AAGTTATAATTTACATCTCTTTAATTATTAGCATAG-------------GGTTTTTTTTTACTACTTTTTTTTATAGTTCTGTGAATTTACTATTT----CACCATCTTTTGAGGGAATGTAGATGT-AGGTACAGTACTGAAGAAACAC---- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 519983 151 + 2232271 TTGCT-TTTT-TCTTTTCTTGATAGTGAAAATCCATTCACTAGTAAATTATAGTTTTCATTTCTTTGATTACTAGTGCAG----TCAAACGTT--------------------TTTT-----------CATTTACTTTCTTTTTCTCATTCTGTA----------GGATGCTAGGCATTGTACTAAATCTATACTTTT i dasNov3.JH580157 I 429 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=440496.000000 s hg38.chr2_KI270769v1_alt 20260 51 + 120616 AGAAATTA---------------------------------------------------------------------AAAAGCAATGCATTAGATGCGGCCACTGCCCC-AAGG----AGCTAAA s panTro5.chr2A 3474729 51 + 111504155 agaaatta---------------------------------------------------------------------aaaaGCAATGCATTAGATGCGGCCACTGCCCC-AATG----AGCTAAA i panTro5.chr2A I 17153 C 0 s panPan2.chr2A 3344348 51 + 114371477 AGAAATTA---------------------------------------------------------------------AAAAGCAATGCATTAGATGCGGCCACTGCCCC-AATG----AGCTAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 217952 51 + 637652 AGAAATTA---------------------------------------------------------------------AAAAGCAATGCATTAGATGCGGCCACTGCCCC-AAGG----AGCTAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3018438 51 + 81552678 AGAAATTG---------------------------------------------------------------------AAAAACAATGCATTAGATGAGACCACTGCCCC-AAGG----AGCTAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3276501 51 + 108979918 AGAAATTA---------------------------------------------------------------------AAAAGCAATGCATTAGATGAGGCCACTGCCCC-AAGG----AGCTAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989585 51 - 111193037 AGAAATTA---------------------------------------------------------------------AAAAGCAATGCATTAGATGAGGCCACTGCCCC-AAGG----AGCTAAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384001 51 + 3644372 AGAAATTA---------------------------------------------------------------------AAAAGCAATGCATTAGATGAGGCCACTGCCCC-AAGG----AGCTAAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3337388 51 - 10304083 AGAAATTA---------------------------------------------------------------------AAAAGCAATGCATTAGATGAGGCCACTGCCCC-AAGG----AGCTAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3421212 51 - 107702431 AGAAATTA---------------------------------------------------------------------AAAAGCAATGCATTAGATGAAGCCACTGCCCC-AAGA----AGCTAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 952067 51 + 1565135 AGAAATTA---------------------------------------------------------------------AAAAGCAATGCATTAGATGAGGCCACTGCCCC-AAGG----AGCTAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327772 51 - 13651311 AGAAATTA---------------------------------------------------------------------AAAAGCAATGCATTAGATGAGGCCACTGCCCC-AAGG----AGCTAAA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3075918 52 - 7082604 AGAAATTA---------------------------------------------------------------------AAAAGCAATGCATTGAATGAGGCCACTGCCCCAAAGG----AGCCAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 561379 52 + 5243153 AGAAATTA---------------------------------------------------------------------AAAAGCAATGCATTGAATGAGGCCACTGCCCCAAAGG----AGCCAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1895003 52 - 1938448 AGAAATTA---------------------------------------------------------------------AAAAGCAATGCATTGAATGAGGCCACTGCCCCAAAGG----AGCCAAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2504461 119 + 5252280 AGAAGTTATTTTCTTGCATCTTTCTTTTCTTTTTTTTCCTTCTGTCTGAGCACATGAAGCCTAGAGATGTATCTTTTAAAAGCAGTGCA-CAGTAGACTGCACTGCCCC-AGTG----AGCCAGA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2016922 46 + 64289059 -----------------------------------------------------------------------------AAAAGTA-TGCCCTCGCCAAGACCCTTGCCCC-CGGAGCTCAGCTAGA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 520134 42 + 2232271 AGAAATTT---------------------------------------------------------------------TTTGG--ATATACCAGACAAGTACGCTGCCAC-TAGA----------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2615656 2008 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=82422.000000 s hg38.chr2_KI270769v1_alt 20311 5 + 120616 GGAGA s panTro5.chr2A 3474780 5 + 111504155 GGAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3344399 5 + 114371477 GGAGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218003 5 + 637652 GGAGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3018489 5 + 81552678 GGAGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3276552 5 + 108979918 GGAGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989636 5 - 111193037 GGAGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384052 5 + 3644372 GGAGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3337439 5 - 10304083 GGAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3421263 5 - 107702431 GGAGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 952118 5 + 1565135 GGAGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327823 5 - 13651311 GGAGA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3075970 5 - 7082604 GGAGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 561431 5 + 5243153 GGAGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1895055 5 - 1938448 GGAGA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2617664 5 - 159902609 GGAGA i micMur3.chr8 I 2008 C 0 s otoGar3.GL873658 2504580 5 + 5252280 GGAGA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2016968 5 + 64289059 GGAGA i canFam3.chr17 C 0 I 1106 s dasNov3.JH580157 520176 5 + 2232271 GGAGA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=452545.000000 s hg38.chr2_KI270769v1_alt 20316 41 + 120616 AATAGGAATTAAGAATAGGAAGGTTTCACCATGAGCAGGAA s panTro5.chr2A 3474785 41 + 111504155 AATAGGAATTAAGAATAGGAAGGTTTCACCATGAGCAGGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3344404 41 + 114371477 AATAGGAATTAAGAATAGGAAGGTTTCACCATGAGCAGGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218008 41 + 637652 AATAGGAATTAAGAATAGGAAGGTTTCACCATGGGCAGGAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3018494 41 + 81552678 AATAGGAATTAGGAATAGGAAGGTTTCACCATGAGCAGGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3276557 41 + 108979918 GATAGGAATTAAGAATAGGAGGGTTTCACCATGAGCAGGAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989641 41 - 111193037 GATAGGAATTAAGAATAGGAGGGTTTCACCATGAGCAGGAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384057 41 + 3644372 GATAGGAATTAAGAATAGGAGGGTTTCACCATGAGCAGGAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3337444 41 - 10304083 GCTAGGAATTAAGAATAGGAGGGTTTCACCATGAGCAGGAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3421268 41 - 107702431 GATAGGAATTAAGAATAGGAGGGTTTCACCATGAGTAGGAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 952123 41 + 1565135 GATAGGAATTAAGAATAGGAGGGTTTCACCATGAGCAGGAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327828 41 - 13651311 GATAGGAATTAAGAATAGGAGGGTTTCACCATGAGCAGGAA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3075975 41 - 7082604 GACAGGAATTAAGAATAGGAAGGTTTCACCATGAGCAGGAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 561436 41 + 5243153 Gacaggaatgaagaggaggaagggttcaccatgagcaggaa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1895060 41 - 1938448 GACAGGAATTAAGAATAGGAAGGTTTCACCATGAGCAGGAA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2617669 41 - 159902609 AAGAGGAATTAAGAATAAGAAGGTTTCGCCATGGGCAGGAA i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2504585 39 + 5252280 GACAGG--TTAAGAATAGGAAGGTTTCACCTCACACAGAAA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 520181 35 + 2232271 AGCAGGACATAATCATAA------TTAACAATTAGCCAAAA i dasNov3.JH580157 C 0 I 163 e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=34351.000000 s hg38.chr2_KI270769v1_alt 20357 4 + 120616 AGGC s panTro5.chr2A 3474826 4 + 111504155 AGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3344445 4 + 114371477 AGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218049 4 + 637652 AGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3018535 4 + 81552678 AGGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3276598 4 + 108979918 ACGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989682 4 - 111193037 ACGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384098 4 + 3644372 ACGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3337485 4 - 10304083 ACGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3421309 4 - 107702431 AGGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 952164 4 + 1565135 ACGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327869 4 - 13651311 AGGC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3076016 4 - 7082604 AGGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 561477 4 + 5243153 aagc i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1895101 4 - 1938448 AGGC i aotNan1.NW_018507213v1 C 0 I 6 s micMur3.chr8 2617710 4 - 159902609 AGAC i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2504624 4 + 5252280 AGAC i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e dasNov3.JH580157 520216 163 + 2232271 I e calJac3.chr14 3408155 14238 - 108792865 I a score=46809.000000 s hg38.chr2_KI270769v1_alt 20361 7 + 120616 ACCATTA s panTro5.chr2A 3474830 7 + 111504155 ACCATTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3344449 7 + 114371477 ACCATTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218053 7 + 637652 ACCATTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3018539 7 + 81552678 ACCATTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3276602 7 + 108979918 ACCTTTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989686 7 - 111193037 ACCTTTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384102 7 + 3644372 ACCTTTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3337489 7 - 10304083 ACCTTTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3421313 7 - 107702431 ACCTTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 952168 7 + 1565135 ACCTTTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327873 7 - 13651311 ACCTTTA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3076020 7 - 7082604 TCCACTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 561481 7 + 5243153 tccgctg i cebCap1.NW_016107454v1 C 0 C 0 s micMur3.chr8 2617714 7 - 159902609 ATTGTTA i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2504628 7 + 5252280 ACCATTA i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e dasNov3.JH580157 520216 163 + 2232271 I e aotNan1.NW_018507213v1 1895105 6 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=80034.000000 s hg38.chr2_KI270769v1_alt 20368 14 + 120616 AGATCAGGTTTGAg s panTro5.chr2A 3474837 14 + 111504155 AGATCAGGTTTGAg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3344456 14 + 114371477 AGATCAGGTTTGAg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218060 14 + 637652 AGATCAGGTTTGAg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3018546 14 + 81552678 AGATCAGGTTTGAg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3276609 14 + 108979918 AAATCAGGTTTCAg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989693 14 - 111193037 AAATCAGGTTTCAg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384109 14 + 3644372 AAATCAGGTTTCAg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3337496 14 - 10304083 AAATCAGGTTTCAg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3421320 14 - 107702431 AAATCAGGTTTCAg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 952175 14 + 1565135 AAATCAGGTTTCAg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327880 14 - 13651311 AGATCAGGTTTCAg i colAng1.NW_012118821v1 C 0 C 0 s micMur3.chr8 2617721 14 - 159902609 AGATCAGATTTGAG i micMur3.chr8 C 0 I 354 s otoGar3.GL873658 2504635 6 + 5252280 ACA--------GGG i otoGar3.GL873658 C 0 I 1 e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3076027 0 - 7082604 C e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e dasNov3.JH580157 520216 163 + 2232271 I e cebCap1.NW_016107454v1 561488 0 + 5243153 C e aotNan1.NW_018507213v1 1895105 6 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=891115.000000 s hg38.chr2_KI270769v1_alt 20382 167 + 120616 gctggacatggtggctcacacctttaatcccagcact-ttgggaggccgaggcaggtggatcacctgaggtcaggagttttaagaccagcctggccaacatggtgaaaccccatatccactaaaaatacaaaaattagccgggtgtggtggtgggcgcctgtaatccc s panTro5.chr2A 3474851 166 + 111504155 gctggacatggtggctcacacctgtaatcccagcact-ttgggaggccgaggcaggtggatcacctgaggtcaggagttt-aagaccagcctggccaacatggtgaaaccccatatccactaaaaatacaaaaattagccgggcgtggtggtgggcgcctgtaatccc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3344470 166 + 114371477 gctggacatggtggctcacacctgtaatcccagcact-ttgggaggccgaggcaggtggatcacctgaggtcaggagttt-aagaccagcctggccaacatggtgaaaccccatatccactaaaaatacaaaaattagccgggcgtggtggtgggcgcctgtaatccc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218074 161 + 637652 gctagacatggtggctcacacc-----tcccagcact-ttgggaggccgaggcaggtggatcacctgaggtcaggagttt-aagaccagcctggccaacatggtgaaaccccatatccactaaaaatacaaaaattagccgggcgtggtggtgagcgcctgtaatccc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3018560 165 + 81552678 gccgggcgccgtggctcacact-gtcatcccagcact-tttggaggccgaagcaggtggatcacctgaggtcaggagttt-aagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggtgggcgcctgtaatccc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3276623 166 + 108979918 gttgggcatggtggttcacacctgtaatcccagcact-ttgggaggccgaggtgggtggatcacctgaggtcaggagttt-aagactagcctggcaaacctggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggtggacacctgtaatccc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989707 166 - 111193037 gttgggcatggtggttcacacctgtaatcccagcact-ttgggaggccgaggtgggtggattacctgaggtcaggagttt-aagactagcctggcaaacctggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggtggacacctgtaatccc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384123 166 + 3644372 gttgggcatggtggttcacacctgtaatcccagcact-ttgggaggccgaggtgggtggatcacctgaggtcaggagttt-aagactagcctggcaaacctggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggtggacacctgtaatccc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3337510 166 - 10304083 gttgggcatggtggttcacacctgtaatcccagcact-ttgggaggccgaggtgggtggatcacctgaggtcaggagttt-aagactagcctggcaaacctggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggtggatacctgtaatccc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3421334 166 - 107702431 gttgggcatggtggttcacacctgtaatcccagcact-ttgggaggccgaggcgggtggatcacctgaggtcaggagttt-aagactagcctggcaaacctggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggtggacacctgtaatccc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 952189 166 + 1565135 gctgggcatggtggttcacacctgtaatcccagcact-ttgggaggccgaggtgggtggatcacctgaggtcaggagttt-aagactagcctggcaaacctggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggtggacacctgtaatccc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3327894 166 - 13651311 gttgggcatggtggttcacacctgtaatcccagcact-ttgggaggccgaggcaggtggatcacctgaggtcaggagttt-aagactagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggtggacacctgtaatccc i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2504642 52 + 5252280 -------------------------------AACACTGTTGAGAGCCCGGTGGGGCTGGGT----------------TTG-AAGGGCAGT---------------------------------------------------------------GATCTCTGGA----- i otoGar3.GL873658 I 1 C 0 e micMur3.chr8 2617735 354 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3076027 0 - 7082604 C e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e dasNov3.JH580157 520216 163 + 2232271 I e cebCap1.NW_016107454v1 561488 0 + 5243153 C e aotNan1.NW_018507213v1 1895105 6 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=46506.000000 s hg38.chr2_KI270769v1_alt 20549 10 + 120616 ag-tactcagg s panTro5.chr2A 3475017 10 + 111504155 ag-tactcagg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3344636 10 + 114371477 ag-tactcagg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218235 10 + 637652 ag-tactcagg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3018725 10 + 81552678 ag-tactcagg i nomLeu3.chr19 C 0 M 100 s rheMac8.chr13 3276789 11 + 108979918 agcttctcagg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989873 11 - 111193037 agcttctcagg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384289 11 + 3644372 agcttctcagg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3337676 11 - 10304083 agctactcagg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3421500 11 - 107702431 agctactcagg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 952355 11 + 1565135 agctactcagg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3328060 11 - 13651311 agctactcagg i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 520379 10 + 2232271 aa-tactaggg i dasNov3.JH580157 I 163 C 0 e micMur3.chr8 2617735 354 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3076027 0 - 7082604 C e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e otoGar3.GL873658 2504694 0 + 5252280 C e cebCap1.NW_016107454v1 561488 0 + 5243153 C e aotNan1.NW_018507213v1 1895105 6 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=105496.000000 s hg38.chr2_KI270769v1_alt 20559 25 + 120616 ---------aggctgaggcgggcgaattgcttga s panTro5.chr2A 3475027 25 + 111504155 ---------aggctgagacgggcgaattgcttga i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3344646 25 + 114371477 ---------aggctgagacgggcgaattgcttga i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218245 25 + 637652 ---------aggctgagacaggcgaattgcttga i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3276800 25 + 108979918 ---------aaactgaggcgggagaattgcttga i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989884 25 - 111193037 ---------aaactgaggtgggagaattgcttga i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384300 25 + 3644372 ---------aaactgaggcgggagaattgcttga i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3337687 25 - 10304083 ---------aaactgaggcgggagaattgcttga i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3421511 25 - 107702431 ---------aaactgaggcgggagaattgcttga i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 952366 25 + 1565135 ---------aaactgaggcgggagaattgcttga i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3328071 25 - 13651311 ---------aaactgaggcgggagaattgcttga i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2504694 9 + 5252280 ---------GGGCTGGGG---------------- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 520389 34 + 2232271 agtaagggtttgttgggttgggctgatctttgga i dasNov3.JH580157 C 0 I 1 e micMur3.chr8 2617735 354 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3076027 0 - 7082604 C e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e cebCap1.NW_016107454v1 561488 0 + 5243153 C e aotNan1.NW_018507213v1 1895105 6 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I e nomLeu3.chr19 3018735 100 + 81552678 M a score=429943.000000 s hg38.chr2_KI270769v1_alt 20584 95 + 120616 acccaggtggctgaggttgcagtgagccaagat------------cgcgccaccgcactccagcctg-ggtgacaacagca-----------------aaactccgtctca-aaaaa--caaa-----------------caaaa s panTro5.chr2A 3475052 96 + 111504155 acccaggtggctgaggttgcagtgagccaagat------------cgcgccactgcactccagcctg-ggcgacaacagca-----------------aaactccgtctca-aaaaaa-caaa-----------------caaaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3344671 95 + 114371477 acccaggtggctgaggttgcagtgagccaagat------------cgcgccactgcactccagcctg-ggcgacaacagca-----------------aaactccgtctca-aaaaa--acaa-----------------caaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218270 95 + 637652 acccaggtggctgaggttgcagtgagccaagat------------cgcgccaccgcactccagcctg-ggcgagaacagca-----------------aaactccgtctca-aaaaa--caaa-----------------caaaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3018838 97 + 81552678 acccaggtggcggaggttgcagtgagacaagat------------cgcgccactgcactccagcttg-ggcgacaacagca-----------------aaactccgtctca-aaaaaacaaaa-----------------aaaaa i nomLeu3.chr19 M 100 C 0 s rheMac8.chr13 3276825 95 + 108979918 acccaggtggcggaggttgcagtgagccaaaat------------cgcgccattgcactccagccta-ggcaacaagagca-----------------aaactccatctcg-aaaaa--aaaa-----------------aaGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4989909 95 - 111193037 acccaggtggcggaggttgcagtgagccaaaat------------cgcgccattgcactccagccta-ggcaacaagagca-----------------aaactccatctcg-aaaaa--aaaa-----------------aaGAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384325 95 + 3644372 acccaggtggcggaggttgcagtgagccaaaat------------cgcgccattgcactccagccta-ggcaacaagagca-----------------aaactccatctcg-aaaaa--aaaa-----------------aaGAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3337712 95 - 10304083 acccaggtggcggaggttgcagtgagccaaaat------------cacgccattgcactccagccta-ggcaacaagagca-----------------aaactccatctcg-aaaaa--aaaa-----------------aaGAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3421536 96 - 107702431 acccaggtggcggaggttgcagtgagccaaaat------------cgcgccattgcactccagccta-ggcaacaagagca-----------------aaactccatctcgaaaaaa--aaaa-----------------aaGAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 952391 95 + 1565135 acctaggtggcggaggttgcagtgagccaaaat------------cgcgccattgcactccagccta-ggcaacaagagca-----------------aaactccatctcg-aaaaa--aaaa-----------------aaGAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3328096 92 - 13651311 acccaggtggcggaggttgcagtgagccaagat------------cgtgccattgcactccagccta-ggcaacaagagca-----------------aaactccgtctca-aaaaa--aaaa--------------------ag i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2504703 25 + 5252280 ---------------------ATGGGCCAG----------------------------TTCAGACTA-GG-----GCAGC----------------------------------------------------------------- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 520424 136 + 2232271 atccag-----taatgttgtaat-atctaagttttttttaatctccacccaatcaaattccaccctgtggggacaatatcatctcactgagaatgAGTATACTACTAATTA-AAATA--GGAAGGTATCGCCAGGGGCAGGAAAG i dasNov3.JH580157 I 1 C 0 e micMur3.chr8 2617735 354 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3076027 0 - 7082604 C e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e cebCap1.NW_016107454v1 561488 0 + 5243153 C e aotNan1.NW_018507213v1 1895105 6 - 1938448 I e calJac3.chr14 3408155 14238 - 108792865 I a score=3930228.000000 s hg38.chr2_KI270769v1_alt 20679 474 + 120616 aGATCAGGTTTGA----------GGTTGGTTTG-AGGGTGCTC---ATCTTGCAATGAGCAAGTGCAGGTGAG-----CTCTGACTGGAGCAGGGGCG---------------------TGTGAGGGCTCGGCGACACAGAGCGGCC------------------------------------------------------------AGCTACACCTT---CATCTAGAACGGA-TTCA-TGTCATCTCCAACTCC--AGGGTGGCCAGCTGAAGA--CTGGG--------------------------------------C--CATCATCTGTTCCGAATCATTGATATGAT-TGTGTTTCCTGT-GACCTGTTCTGTT-GTTTTAGACCTGGTCAGCACACTCACAACTTCAATG-AAATTAGGAATACCTTTCACACAGAGCTAGGCACATAAGTTGATAAGTACAACCTGAAAAGGCCCAACTTAGCCGTGAG---TGGACATAAAT-AGGAGTTGTATTACCACAAAAGTAAGGAAA-------------------------------ATATGCC------------------------------------ATGTACAGA-T-ATCTTGTTCATTT------ATTATACA--AAATAAATGGT---GGTCTTTGCTCCCAAAGACCCTTCCAGAAGAAAACAGTTG s panTro5.chr2A 3475148 474 + 111504155 aGATCAGGATTGA----------GGTTGGTTTG-AGGGTGCTC---ATCTTGCAATGAGCAAGTGCAGGTGAG-----CTCTGACTGGAGCAGGGGCG---------------------TGTGAGGGCTCGGCGACACAGAGCAGCC------------------------------------------------------------AGCTACACCTT---CATCTAGAACGGA-TTCA-TGTCATCTCCAACTCC--AGGGTGGCCAGCTGAAGA--CTGGG--------------------------------------C--CATCATCTGTTCCGAATCATTGATATGAT-TTTGTTTCCTAT-GACCTGTTCTGTT-GTTTTAGACCTGGTCAGCACACTCACAACTTCGATG-AAATTAGGAATACCTTTCACACAGAGCTAGGCACATAAGTTGATAAGTACAACCTGAAAAGGCCCAACTTAGCCGTGAG---TGGACATAAAT-AGGAGTTGTATTACCACAAAAGTAAGGAAA-------------------------------ATATACC------------------------------------ATGTACAGA-G-ATCTTGTTCATTT------ATTATACA--AAATAAATGGT---GGTCTTTGCTCCCAAAGACCCTTCCAGAAGAAAACAGTTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3344766 474 + 114371477 aGATCAGGATTGA----------GGTTGGTTTG-AGGGTGCTC---ATCTTGCAATGAGCAAGTGCAGGTGAG-----CTCTGACTGGAGCAGGGGCG---------------------TGTGAGGGCTCGGCGACACAGAGCAGCC------------------------------------------------------------AGCTACACCTT---CATCTAGAACGGA-TTCA-TGTCATCTGCAACTCC--AGGGTGGCCAGCTGAAGA--CTGGG--------------------------------------C--CATCATCTGTTCCGAATCATTGATATGAT-TGTGTTTCCTAT-GACCTGTTCTGTT-GTTTTAGACCTGGTCAGCACACTCACAACTTCGATG-AAATTAGGAATACCTTTCACACAGAGCTAGGCACATAAGTTGATAAGTACAACCTGAAAAGGCCCAACTTAGCCGTGAG---TGGACATAAAT-AGGAGTTGTATTACCACAAAAGTAAGGAAA-------------------------------ATATACC------------------------------------ATGTACAGA-G-ATCTTGTTCATTT------ATTATACA--AAATAAATGGT---GGTCTTTGCTCCCAAAGACCCTTCCAGAAGAAAACAGTTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218365 473 + 637652 aGATTAGGTTTGA----------GGTTGGTTTG-AGGGTGCTT---ATCTTGCAATGAGCAAGTGCAGGTGAG-----CTCTGACTGGAGCAGGGGCG---------------------TGTGAGGGCTCGGTGACACAGAGCGGCC------------------------------------------------------------AGCTACACCTT---CATCTAGAACGGA-TTCA-TGTCATCTCCAACTCC--AGGGTGGCCAGCTGAAGA--CTGGG--------------------------------------C--CATCATCTGTTCCAAAACATTGATATGAT-TGTGTTTCCTAT-GACCTGTTCTGTT-GTTTTAGACCTGGTCAGCACACTCACAACTTCGATG-AAATTAGGAATACC-TTCACACAGAGCTAGGCACATAAGTTGATAAGTACAACCTGAAAAGGCCCAACTTAGCCGTGAG---TGGACATAAAT-AGGAGTTGTATTACCACAAAAGTAAGGAAA-------------------------------ATATACC------------------------------------ACGTACAGA-G-ATCTTGTTCATTT------ATTATACA--AAATAAATGGT---GGTCTTTGCGCCCAAAGACCCTTCCAGAAGAAAACAGTTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3018935 475 + 81552678 agaTCAGGTTTGA----------GGTTGGTTTG-AGGTTACTC---ATCTTGCAATGAGCAAGTGCAGGTGCG-----CTCTGACTGGAGCAGGGGCG---------------------TGTGAGGGCTCGGCGACAC--AGCGGCC------------------------------------------------------------AGCCGCACCTT---CATCTAGAACAGA-TTCACTGTCATCTCCAACTCC--AGGGTGGCCAGCTGAAGA--CTGGG--------------------------------------C--CGTCATCTGTTCTGAATCATTGATATAA--TGTGTTTCCTAT-GACCTGTTCTGTT-GTTTTAGACCTGGTCAGCACACTCACAACTTCGATG-AAATTAGGAATGCCTTTCACACAGGGCTAGGCACATCAGTTGATAAGTACATCCTGAAAAGGCCCAACTTAGCCGTGAGTATTGGACATAAAT-AGGAGTTGTATTACCACAAAAGTAAGGAAA-------------------------------ATATACC------------------------------------GTGTACAGA-G-ATCTTGCTCATTT------GTTAAGCA--AAATAAATGGT---GGTCTTTGCTCCCAAAGACCCTTCCAGAAGAAAACAGTTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3276920 460 + 108979918 AGATCAGGTTTGA----------GGTTGGTTTC-AGGGTACTC---ATCTTGCAATGAGCAAGTGCAGGTGAG-----CTCTGACGGGAGCGGGGGCG---------------------T-----------------CAGAGCAGCC------------------------------------------------------------AGCCGCACCTT---CGTCTAGAACGGA-TTCACTGTCATCTCCCACTCC--AGGGTGGCCAGCTGAAGA--TTGGG--------------------------------------C--CGTCATCTATTCTGAACCATTGATATAAT-TGTGTTTCCCAT-GGCCTGTTCTGTT-GCTTTAGACCTGGTCAGCACGCTCACAACTTTGATG-AAATTA-GAATGCCTTTCACACAGAGCTAGGCAAGTAAGTTGATGAGTACAACCTGAAAAGGCCCAACTTAGCCGTGAGCATTGGACACAAAT-AGGAGTTGTATGACCACAAAAGTAAGGAAA-------------------------------ATATACC------------------------------------GCGTACAGA-G-ACCCTGTTCATTT------GTTATGCA--AAATAAATGGT---GGTCTTCACTCCCAAAGACCCTTCCAGAAGAAAACAGTTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4990004 460 - 111193037 AGATCAGGTTTGA----------GGTTGGTTTC-AGGGTACTC---ATCTTGCAATGAGCAAGTGCAGGTGAG-----CTCTGACGGGAGCGGGGGCG---------------------T-----------------CAGAGCAGCC------------------------------------------------------------AGCCGCACCTT---CGTCTAGAACGGA-TTCACTGTCATCTCCCACTCC--AGGGTGGCCAGCTGAAGA--TTGGG--------------------------------------C--CGTCATCTATTCTGAACCATTGATATAAT-TGTGTTTCCCAT-GGCCTGTTCTGTT-GCTTTAGACCTGGTCAGCACGCTCACAACTTTGATG-AAATTA-GAATACCTTTCACACAGAGCTAGGCAAGTAAGTTGATGAGTACAACCTGAAAAGGCCCAACTTAGCCGTGAGCATTGGACACAAAT-AGGAGTTGTATGACCACAAAAGTAAGGAAA-------------------------------ATATACC------------------------------------GCGTACAGA-G-ACCCTGTTCATTT------GTTATGCA--AAATAAATGGT---GGTCTTCACTCCCAAAGACCCTTCCAGAAGAAAACAGTTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384420 460 + 3644372 AGATCAGGTTTGA----------GGTTGGTTTC-AGGGTACTC---ATCTTGCAATGAGCAAGTGCAGGTGAG-----CTCTGACGGGAGCGGGGGCG---------------------T-----------------CAGAGCAGCC------------------------------------------------------------AGCCGCACCTT---CGTCTAGAACGGA-TTCACTGTCATCTCCCACTCC--AGGGTGGCCAGCTGAAGA--TTGGG--------------------------------------C--CGTCATCTGTTCTGAACCATTGATATAAT-TGTGTTTCCCAT-GGCCTGTTCTGTT-GCTTTAGACCTGGTCAGCACGCTCACAACTTTGATG-AAATTA-GAATGCCTTTCACACAGAGCTAGGCAAGTAAGTTGATGAGTACAACCTGAAAAGGCCCAACTTAGCCGTGAGCATTGGACACAAAT-AGGAGTTGTATGACCACAAAAGTAAGGAAA-------------------------------ATATATC------------------------------------GTGTACAGA-G-ACCCTGTTCATTT------GTTATGCA--AAATAAATGGT---GGTCTTCACTCCCAAAGACCCTTCCAGAAGAAAACAGTTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3337807 476 - 10304083 AGATCAGGTTTGA----------GGTTGGTTTC-AGGGTACTC---ATCTCGCAATGAGCAAGTGCAGGTGAG-----CTCTAACTGGAGCAGGGGCG---------------------TGTGAGGGCTCGGGG-CACCGAGCAGCC------------------------------------------------------------AGCCGCACCTT---CGTCTAAAACGGA-TTCACTGTCATCTCCCACTCC--AGGGTGGCCAGCTGAAGA--CTGGG--------------------------------------C--CGTCATCTGTTCTGAACCATTGATATAAT-TGTGTTTCCCAT-GGCCTGTTCTGTT-GCTTTAGACCTGGTCAGCACGCTCACAACTTTGATG-AAATTA-GAATGCCTTTCACACAGAGCTAGGCAAGTAAGTTGATGAGTACAACCTGAAAAGGCCCAACTTAGCCGTGAGCATTGGACACAAAT-AGGAGTTGTATGACCACAAAAGTAAGGAAA-------------------------------ATATACC------------------------------------GCATACAGA-G-ACCCTGTTCATTT------GTTATGCA--AAATAAATGGT---GGTCTTCACTCCCAAAGACCCTTCCAGAAGAAAACAGTTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3421632 477 - 107702431 AGATCAGGTTTGA----------GGTTGGTTTC-AGGGTACTC---ATCTTGCAATGAGCAAGTGCAGGTGAG-----CTCTGACTGGAGCGGGGGCG---------------------TGTGAGGGCTCGGGGACACCGAGCAGCC------------------------------------------------------------AGCCGCACCTT---CGTCTAGAACGGA-TTCACTGTCATCTCCCACTCC--AGGGTGGCCAGCTGAAGA--CTGGG--------------------------------------C--CGTCATCTGTTCTGAACCGTTGATATAAT-TGTGTTTCCCAT-GGCCTGTTCTGTT-GCTTTAGACCTGGTCAGCACACTCACAACTTTGATG-AAATTA-GAATGCCTTTCACACAGAGCTAGGCAAGTAAGTTGATGAGTACAACCTGAAAAGGCCCAACTTAGCCGTGAGCATTGGACACAAAT-TGGAGTTGTATGACCACAAAAGTAAGGAAA-------------------------------ATATACC------------------------------------GCGTACAGA-G-ACCCTGTTCATTT------GTTATGCA--AAATAAATGGT---GGTTTTCACTCCCAAAGACGCTTCCAGAAGAAAACAGTTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 952486 477 + 1565135 AGATCAGGTTTGA----------GGTTGGTTTC-AGGGTACTC---ATCTTGCAATGAGCAAGTGCAGGTGAG-----CTCTGACTGGAGCAGGGGCG---------------------TGTGAGGGCTCGGGGACACCGAGCAGCC------------------------------------------------------------AGCCGCACCTT---CGTCTAAAACGGA-TTCACTGTCATCTCCCACTCC--AGGGTGGCCAGCTGAAGA--CTGGG--------------------------------------C--CATCATCTGTTCTGAACCATTGATATAAT-TGTGTTTCCCAT-GGCCTGTTCTGTT-GCTTTAGACCTGGTCAGCACACTCACAACTTTGATG-AAATTA-GAATGCCTTTCACACAGAGCTAGGCAAGTAAGTTGATGAGTACAACCTGAAAAGGCCCAACTTAGCCGTGAGCATTGGACACAAAT-AGGAGTTGTATGACCACAAAAGTAAGGAAA-------------------------------ATATACC------------------------------------GCGTACAGA-G-ACCCTGTTCATTT------GTTATGCA--AAATAAATGGT---GGTCTTCACTCCCAAAGACCCTTCCAGAAGAAAACAGTTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3328188 477 - 13651311 agatcaggtttga----------ggttggtttc-aggATACTC---ATCTTGCAATGAGCAAGTGCAGGTGAG-----CCGTGACTGGAGCGGGGGCG---------------------TGTGAGGGCTCGGCGACACCGAGCAGCC------------------------------------------------------------AGCCGCACCTT---CGTCTAGAATGGG-CTCACTGTCATCTCCCACTCC--AGGGTGGCCAGCTGAAGA--CTGGG--------------------------------------C--CGTCGTCTGTTCTGAATCGTTGATATAAT-TGTGTTTCCCAT-GGCCTGTTCTGTT-GCTTTCGACCTGGTCAGCACGCTCACAACTTTGATG-AAATTG-GAATGCCTTTCACACAGAGCCAGGCAAATCAGTTGATAAGTACAACCTGAAAAGGCCCAACTTAGCCGTGAGTGTTGGACACAAAT-GGGAGTTGTATGACCACAAAAGGAAGGAAA-------------------------------ATATACC------------------------------------GCGTACCGA-G-ATCCCGTTCATTT------GTTACGCA--AAGGAAATGGT---GGTCTTCACTCCCAAAGACACTTCCAGAAGAAAACAGTTG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3076027 483 - 7082604 AGATCAGGTTTGA----------GGTTGGTTTGAAGGGTACTC---ATCTTACAGTGAGCAAGTGCAGGTGAG-----CTCTGACTGGAGGGGAGGCGGGA------GAGGTGGCGTGATGTGAGGGCTCGGTGACACA-CGTGGCC------------------------------------------------------------AGCTGCACCTT---CATCCAGAAC-GA-TTCGCTGTCATCTGCAACTCC--AGGGTGGCCAGCCGAAGA--CTGGG--------------------------------------C--CGTCATCTGTTCTAAATCGTTGATGGAAT-TGTGTCTCCCAC-GGCCTGTGCTG-----TTTAGATCTGGTC--TAAACTTACAACCTTGATG-GAATTAGGAATGCCTTTCACACAAAGGAAGCCAAATAAGCTGACAAGTACCACCTGAAAAGGCCCCACTTAGCCGTGGGTGTTGGACACAAAT-GGGAGTTGTATTACCAC-AAAGAAAGGACA-------------------------------AT-CGCC------------------------------------ATGTACAGA---ATTCTGTTCATTT------GTTACACA--AAATAAATGGT---GGTCTTTGCTACCAAAAACCCTTCCAGAAGAAAACAGCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 561488 485 + 5243153 agatcaggtttga----------ggttggcttgaaggctgCTC---ATCTTACAGTGAGCAAGTGCAGGTGAG-----CTCTGACTGGAGGGGAGGTGGGA------GAGGTGGCGTGGCGTGAGGGCTCAGTGACACAGGGCAGCC------------------------------------------------------------AGCTGCACCTT---CATCCAGAAC-GG-TTCACTGTCATCTGCAACTCC--AGGGTGGGCAGCTGAAGA--CTGGG--------------------------------------C--CGTCATCTGTTCTAAATCATTGATGGAAT-TGTGTCTCCCAC-GGCCTGTGCTG-----TTTGGACCTGGTC--TAAACTTACAACCTTGATG-AAATTAGGAATGCCTTTCACACAAAGGAAGCCAAATAAGCTGATAAGTACCACCTGAAAAGGCACCACATAGCCATGGGCATTGGACACAAAC-AGGAGTTGTATTACCACGAAAGTAAGGAAA-------------------------------AT-CGCC------------------------------------ATGTGCAGA---ATTCTGTTCATTT------GTTACGCA--AAATAAATGGT---AGTCTTTGCTACCAAAGACCCTTCCAGAAGAAAACAGCTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1895111 485 - 1938448 AGATCAGGTTTGA----------GGTTGGTTTGAAGGGTATTC---ATCTTACAGTGACCAAGTGTAGGTGAG-----CTCTGACTGGAGGGGAGGCGAGA------GAGGTGGCATGGTGTGAGGGCTCGGTGACTCAGGGCAGCC------------------------------------------------------------AGCTGCACCTT---CATCCAGAAC-GA-TTCACTGTCATCTGCAACTCC--AGGGTGGCCAGCCGAAGA--CTGGG--------------------------------------C--CGTCATCTGTTGTAAATCGTTGATGGAAT-TGTGTCTCCCAC-GGCCTGTGCTG-----TTTAGACCTGGTC--TAAACTTACAACCTTGATG-AAATTAAAAATGCCTTTCACACAAAGGAAGCCAAATAAGCTGATAAGTACCACCTGAAAAGGCCCCACTTAGCCGTGGGTATTGGACACAAAC-AGGAGTTGTATTACCATAAAAGTAAGGAAA-------------------------------AT-CGCC------------------------------------GTGTACAGA---ATTCTGTTCATTT------GTTACGCA--AAATAAATGGT---GGTCTTTGCTACCAAAGACCCTTCCAGAAGAAAACAGCTG i aotNan1.NW_018507213v1 I 6 C 0 s otoGar3.GL873658 2504728 440 + 5252280 ----------------------------------AGGGTGC----------------------------------------TGACAGGTGTGGCAGCA---------------------------------------CAG----GCC------------------------------------------------------------AGCCGTGCCTTCTGCATCCAAGACGGATTTCACTGTCATCTGCAGCTCC---TGGTGGCCAGCCG-GGA--CTAGG--------------------------------------AGGTGTCATCCGTTTTGCGTAGTTGATACACT-TGTGCTTCCCAC-GGCCTGTGCTGTT-ACTGTAGGCCTGACGAGCACACTTAAAAC-TGGAAA-AAACTAAGGACG-GTTTTACACCAAGGGAGGCAAAGGAGTTGGTGAGGGCACCCTGGGAAGACCTGACTGAGCTGTGAGTGCTGGATGCAGAT-GAGAGAGGGATAGTAACAAAA-CCAGGAAA-------------------------------ACACACCCAAAGtcacttagcaagcgcttagtaagcacccactgtgtgcAGAGG-ATCACATTCGTCT------GTTACACA-GAAGTCAACAGT---GCTCTCTGCTTCCGAGGACCCACCCAGAAGTAAGCAGGTG i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 520560 658 + 2232271 TGATCACTGGTGAAGTAAGACGTGGTTAGGTTT-TGAAGGCTCGGAGTCTT----TGGGCTAGTGAACGGGAGAGTGTTTCAGGCTGGAGGAAGAGTAGGATGAACTAATGTGACAAGGTGTGAATACAT----ACACGGAGCAGCTTATAGCTTGACTAGATTATATGAAAAGGTTCCTGAAGGGAAGTGACAAGAGAAATAGATGAATTATATTGT---CATCCAAAGCAGATTTTACCATCATTTCCAGCTCTTGAAGGTGGCCAGTTGAAGGACTTAGGGGTGACAGCAGTTCCCTGTTAAAAGAGTTAAATACTTTT--AATAATCTATTTTGAATGATTTATATGCTGTGTGCTTCCTGTGGGTCTACACTTTTAATTTTAGACCCGGTCTCTACACTTAGAACTTTGATGAAAATTAGGAATGCATTTTAAGCAAAAATAGGGAAATAAGTTGGTAAGTACAACATGAAAAAGTCTGGCTGAACTATAAATATTGGGCACAAGTAAGGAGCTGTATAATTTTAAAAAGGGGGAAATTTATTAGAACTCACCAAATATTTCTGAAATACCTACT------------------------------------GTGGGCAGA-GCACCATATTCATTTTTGAGAGTTATACAAAAAATAAATTACATAGGTCT--GCTTTCAAGGATCTATCAAgggaagcagatttg i dasNov3.JH580157 C 0 I 1588 e micMur3.chr8 2617735 354 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=439782.000000 s hg38.chr2_KI270769v1_alt 21153 58 + 120616 AATACTTTTAGTGCAGAAGGACA------------ACTCC---GGGTTACTGGTAGAACTTAAAAACTATTAT s panTro5.chr2A 3475622 58 + 111504155 AATACTTTTAGTGCAGAAGGACA------------ACTCC---GGGTTACTGGTAGAACTTAAAAACTTTTAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3345240 58 + 114371477 AATACTTTTAGTGCAGAAGGACA------------ACTCC---GGGTTACTGGTAGAACTTAAAAACTTTTAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218838 58 + 637652 AATACTTTTAGTGCAGAAGGACA------------ACTCT---GGGTTACTGGTAGAACTTAAAAACTATTAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3019410 55 + 81552678 AATACTTTTAGTGCAGAAGGACA------------ACTCC---AGGTTACTGGTAGAACTT---AACTATTAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3277380 55 + 108979918 AACACTTTTAGTGCAAAAGGACA------------ACTCC---GGGTTACTGGTAGAACTT---AGCTGTTAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4990464 55 - 111193037 AACACTTTTAGTGCAAAAGGACA------------ACTCC---GGGTTACTGGTAGAACTT---AGCTGTTAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384880 55 + 3644372 AACACTTTTAGTGCAAAAGGACA------------ACTCC---GGGTTACTGGTAGAACTT---AGCTGTTAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3338283 55 - 10304083 AACACTTTTAGTGCAAAAGGACA------------ACTCC---GGGTTACTGGTAGAACTT---AGCTGTTAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3422109 55 - 107702431 AACACTTTTAGTGCAAAAGGACA------------ACTCC---GGGTTACAGGTAGAACTT---AACTGTTAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 952963 55 + 1565135 AACACTTTTAGTGCAAAAGGACA------------ACTCC---GGGTTACTGGTAGAACTT---AGCTGTTAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3328665 55 - 13651311 AACACTTTTAGTGCAAAAGGACA------------ACTCC---GGGTTACTGGTAGAACTT---AACTGTTAT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3076510 52 - 7082604 AACACTTTTAGTGCAAAGAGACA------------ACTCC---AGGTTACTGATGGAACTT------TAGTAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 561973 52 + 5243153 AACACTTTTAGTGCAAAGGGACA------------ACTTC---AGGTTACTGGTAGAATTT------TAGTAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1895596 51 - 1938448 AACAC-TTTAGTGCAGAGGGACA------------ACGCC---AGGTTACTGGTAGAACTT------GAGTAT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2505168 71 + 5252280 -ACACCATCACTGTACAGGGACACGCCTTTCCCCCACCCCCCGGGGACACTGGTAGAAATTAATAACTGTTA- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2617735 354 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e dasNov3.JH580157 521218 1588 + 2232271 I e calJac3.chr14 3408155 14238 - 108792865 I a score=226140.000000 s hg38.chr2_KI270769v1_alt 21211 22 + 120616 TTACAGTTTCTCTTCTTAACTG s panTro5.chr2A 3475680 22 + 111504155 TTACAGTTTCTCTTCTTAACTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3345298 22 + 114371477 TTACAGTTTCTCTTCTTAACTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218896 22 + 637652 TTACAGTTTCTGTTCTTAACTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3019465 22 + 81552678 TTACAGTTTCTCTTCTCAACTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3277435 22 + 108979918 TTATAGTTTCTCTTCCTAACTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4990519 22 - 111193037 TTATAGTTTCTCTTCCTAACTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384935 22 + 3644372 TTATAGTTTCTCTTCCTAACTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3338338 22 - 10304083 TTATAGTTTCTCTTCCTAACTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3422164 22 - 107702431 TTACAGTTTCTCTTCTTAACTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 953018 22 + 1565135 TTATAGTTTCTCTTCCTAACTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3328720 22 - 13651311 TTACCGTTTCTCTTCTTAACTG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3076562 22 - 7082604 TTAGAGTTTCTCCTCTTAACTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 562025 22 + 5243153 TTACAGTTTCTCCTCTTAACTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1895647 22 - 1938448 TTACAGTTTCTCCTCTTAACTG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2618089 22 - 159902609 TTACGGTTCCTTTTCTTAACTT i micMur3.chr8 I 354 C 0 s otoGar3.GL873658 2505239 21 + 5252280 -CACAGTTTCTTTTCTTAGCTT i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e dasNov3.JH580157 521218 1588 + 2232271 I e calJac3.chr14 3408155 14238 - 108792865 I a score=361718.000000 s hg38.chr2_KI270769v1_alt 21233 33 + 120616 TTTATAACTTTT-----GTTCAT-AAAAACTGGCAGTTT s panTro5.chr2A 3475702 33 + 111504155 TTTATAACTTTT-----GTTCAT-AAAAACTGGCAGTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3345320 33 + 114371477 TTTATAACTTTT-----GTTCAT-AAAAACTGGCAGTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218918 33 + 637652 TTTATAACTTTT-----GTTCAT-AAAAACTGGCAGTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3019487 33 + 81552678 TTTATAACTTTT-----GTTCAT-AAAAACTGGCAGTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3277457 33 + 108979918 TTTATAACTTTT-----GTTCAT-AAAAACTGGCAGTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4990541 33 - 111193037 TTTATAACTTTT-----GTTCAT-AAAAACTGGCAGTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384957 33 + 3644372 TTTATAACTTTT-----GTTCAT-AAAAACTGGCAGTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3338360 33 - 10304083 TTTATAACTTTT-----GTTCAT-AAAAACTGGCAGTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3422186 33 - 107702431 TTTATAACTTTT-----GTTCAT-AAAAACTGGCAGTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 953040 33 + 1565135 TTTATAACTTTT-----GTTCAT-AAAAACTGGCAGTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3328742 33 - 13651311 TTTATAACTTTT-----GTTCAT-AAAAACTGGCAGTTT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3076584 33 - 7082604 TTCATAACTGTT-----GTTCAC-AGAAATGGGCAATTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 562047 33 + 5243153 TTCATAACTGTT-----GTTCAC-AGAAATGGGCAGTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1895669 32 - 1938448 TTCATAACTG-T-----GTTTAC-AGAAATGGGCAGTTT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2618111 33 - 159902609 CTTATAACTTTT-----GTTCAC-ACAAACTGGCAGTTT i micMur3.chr8 C 0 I 4650 s otoGar3.GL873658 2505260 33 + 5252280 TTTGTAACTCTT-----GTTCAC-AAAAACTTGGGATTT i otoGar3.GL873658 C 0 I 1 s dasNov3.JH580157 522806 39 + 2232271 TTTAAAATTTTTAAAAAGCTAATAAAAAATTGACAGTTT i dasNov3.JH580157 I 1588 C 0 e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=528316.000000 s hg38.chr2_KI270769v1_alt 21266 56 + 120616 -CCTTTGTCTAACCACTGCATACC----CTCTTTCTTTAGGACTC--TG-GTTTTTCTGTTGCT s panTro5.chr2A 3475735 56 + 111504155 -CCTTTGTCTAACCACTGCGTACC----CTCTTTCTTTAGGACTC--TG-GTTTTTCTGTTGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3345353 56 + 114371477 -CCTTTGTCTAACCACTGCATACC----CTCTTTCTTTAGGACTC--TG-GTTTTTCTGTTGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 218951 56 + 637652 -CCTTTGTCTAACCACTGCATACC----CTCTTTCTTTAGGACTC--TG-GTTTTTCTGTTGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3019520 55 + 81552678 -CCTTTGTCTAACCACTGCAGGCC----GTCTTTCTCTAGGACTC--TG-G-TTTTCTGTTGCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3277490 58 + 108979918 -CCTTTGTCTAACCACTGCATACC----CTCTTTATCTAGGACTCTCTG-GTTTTTCTGTTGCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4990574 58 - 111193037 -CCTTTGTCTAACCACTGCATACC----CTCTTTATCTAGGACTCTCTG-GTTTTTCTGTTGCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3384990 58 + 3644372 -CCTTTGTCTAACCACTGCATACC----CTCTTTATCTAGGACTCTCTG-GTTTTTCTGTTGCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3338393 58 - 10304083 -CCTTTGTCTAACCACTGCATACC----CTCCTTATCTAGGACTCTCTG-GTTTTTCTGTTGCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3422219 58 - 107702431 -CCTTTGTCTAACCACTGCATACC----CTCTTTATCTAGGACTCTCTG-GTTTTTCTGTTGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 953073 58 + 1565135 -CCTTTGTCTAACCACTGCATACC----CTCTTTATCTAGGACTCTCTG-GTTTTTCTGTTGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3328775 57 - 13651311 -CCTTTGTCTAACCACTGCATACC----CTCTTTATCTAGGACTCT-TG-GTTTTTCTGTTGCT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3076617 56 - 7082604 -CCTTTGTCTAACCAGTGCATACC----CTCTTGATCTAGGACTC--TG-GTTTTTCTGTTGCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 562080 56 + 5243153 -CCTTTGTCTAACCAGTGCATACC----TTCTTGATCTAGGACTC--TG-GTTTTTCTGTAGCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1895701 56 - 1938448 -CCTTTGTCTAACCAGTGCATACC----CTCTTGATCTAGGACTC--TG-GTTTTTCTGTTGCT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2505294 61 + 5252280 -AATTTGTCTAATGAGCACATGCCCTGGCTCTTCACCGAGGACTG--GGCGATTTTCTGTTACT i otoGar3.GL873658 I 1 C 0 s dasNov3.JH580157 522845 62 + 2232271 TATTTTGTCTAACCAATACAAACCCTATCTCTTTATGTAGAACTTT-TT-AATTTTATGTTGCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=2132274.000000 s hg38.chr2_KI270769v1_alt 21322 252 + 120616 TTTTGTACTGCTTCCATTTGTGATAGTCAAAAAAGTTGACTCCTTGGAC-TCAAGGAAATATGGTCTTGGTTTCTTTTATCCTGGGACAGCTAGTCATAGTAGTGGCAAAGGATTATCTCATTATCTTCATTACTCATTGTCATCCCAGAGAACCTTGATGAAGAGCTTTTAGATAAAACATGAATAGAGTGTCATTCGGCCAGTTCCGTAGCACCAGCAGCTCTTGTTGAGTGGTGTTCGGTTAGTGAACAG s panTro5.chr2A 3475791 253 + 111504155 TTTTGTACTGCTTCCATTTGTGATAGTCAAAAAAGTTGACTCCTTGGACATCAAGGGAATATGGTCTTGGTTTCTTTTATCCTGGGACAGCTAGTCATAGTAGTGGCAAAGGATTATCTCGTTATCTTCATTACTCATTGTCATCCCAGAGAACCTTGATGAAGAGCTTTTAGATAAAACATGAATAGAGTGTCATTCAGCCAGTTCCGTAGCACCAGCAGCTCTTGTTGAATGGTGTTCGGTTAGTGAACAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3345409 252 + 114371477 TTTTGTACTGCTTCCATTTGTGATAGTCAAAAAAGTTGACTCCTTGGAC-TCAAGGGAATATGGTCTTGGTTTCTTTTATCCTGGGACAGCTAGTCATAGTAGTGGCAAAGGATTATCTCGTTATCTTCATTACTCATTGTCATCCCAGAGAACCTTGATGAAGAGCTTTTAGATAAAACATGAATAGAGTGTCATTCAGCCAGTTCCGTAGCACCAGCAGCTCTTGTTGAATGGTGTTCGGTTAGTGAACAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 219007 252 + 637652 TTTTGTACTGCTTCCATTTGTGATAGTCAAAAAAGTTGACTCCTTGGAC-TCAAGGGAATATGGTCTTGGTTTCTTTTATCCTGGGACAGCTAGTCATAGTAGTGGCAAAGGATTATCTCATTATCTTCATTACTCATTGTCATCCCAGAGAACCCTGATGGAGAGCTTTTAGATAAAACATGAATAGAGTGTCATTCGGCCAGTTCCGTAGCACCAGCAGCTCTTGTTGAATGGTGTTCGGTTAGTGAACAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3019575 252 + 81552678 TTTTGTACTGCTTCCATTTGTGATAGTCAAAACAGTTGACTCCTTAGAG-TCAAGGGAATGTGGTCTTGGTTTCTTTTATCCTGGGACAGCTAGTCATAGTAGTGGCAAAGGATTATCTCGTTATCTTCATTACTCATTGTCATCCCAGAGACCCTTGATGAAGAGCTTTTAGATAAAACATGAGTAGAGTGTCATTCGGCCAGTTCCGTAGCACCAGCAGCTCTTGTTGAATGGTGTCCAGTTAGTGAACAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3277548 249 + 108979918 TTTCATACTGCTGTTATTTGTGACAGGCAAAA-AGTCGACTCCTTGGAC-TCAAGGGAATATGTTCTTGGTTTCTTTCATCCTGGGACAGCCAGTCGTCGTCGTTGCAGAGGATCATCTCATTATCTTCATTACTCA--GTCATCCCAGAGACCCTTGATGAAGAGCTTTTAGATAAAATATGAGTAGAGTGTCATTCGGCCAGTTCCATAGCACCAGCAGCTCTTGTTGAATGGTGTTCGGTTAGTGAACAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4990632 249 - 111193037 TTTCATACTGCTGTTATTTGTGACAGGCAAAA-AGTCGACTCCTTGGAC-TCAAGGGAATATGTTCTTGGTTTCTTTCATCCTGGGACAGCCAGTCGTCGTCGTTGCAGAGGATCATCTCATTATCTTCATTACTCA--GTCATCCCAGAGACCCTTGATGAAGAGCTTTTAGATAAAATATGAGTAGAGTGTCATTCGGCCAGTTCCATAGCACCAGCAGCTCTTGTTGAATGGTGTTCGGTTAGTGAACAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3385048 249 + 3644372 TTTCATACTGCTGTTATTTGTGACAGGCAAAA-AGTCGACTCCTTGGAC-TCAAGGGAATATGTTCTTGGTTTCTTTCATCCTGGGACAGCCAGTCGTCGTCGTTGCAGAGGATCATCTCATTATCTTCATTACTCA--GTCATCCCAGAGACCCTTGATGAAGAGCTTTTAGATAAAACATGAGTAGAGTGTCATTCGGCCAGTTCCATAGCACCAGCAGCTCTTGTTGAATGGTGTTCGGTTAGTGAACAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3338451 249 - 10304083 TTTCGTACTGCTGTTATTTGTGACAGGCAAAA-AGTCGACTCCTTGGAC-TCAAGGGAATATGTTCCTGGTTTCTTTCATCCTGGGACAGCCAGTCATCGTCGTTGCAGAGGATCATCTCATTATCTTCATTACTCA--GTCATCCCAGAGACCCTTGATGAAGAGCTTTTAGATAAAACATGAGTAGAGTGTCATTCGGCCAGTTCCATAGCACCAGCAGCTCTTGTTGAATGGTGTTCGGTTAGTGAACAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3422277 251 - 107702431 TTTTGTACTGCTTTTATTTGTGACAGGCAAAA-AGTCGACTCCTTGGAC-TCAAGGGAATATGTTCTTGGTTTCTTTCATCCTGGGACAGCTAGTCATCGTAGTTGCAGAGGATCATCTCATTATCTTCATTACTCACTGTCATCCCAGAGACCCTTGATGAAGAGCTTTTAGATAAAACATGAGTAGAGTGTCATTCGGCCAGTTCCATAGCACCAGCAGCTCTTGTTGAATGGTGTTCGGTTAGTGAACAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 953131 251 + 1565135 TTTCGTACTACTGTTATTTGTGACAGGCAAAA-AGTCGACTCCTTGGAC-TCAAGGGAATATGTTCTTGGTTTCTTTCATCCTGGGACAGCCAGTCATCGTCATTGCAGAGGATCATCTCATTATCTTCATTACTCACTGTCATCCCAGAGACCCTTGATGAAGAGCTTTTAGATAAAACATGAGTAGAGTGTCATTCGGCCAGTTCCATAGCACCAGCAGCTCTTGTTGAATGGTGTTCGGTTAGTGAACAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3328832 249 - 13651311 GTTGGTACTGCTTTTATTTGTGACGGGCAAAA-AGTCGACTCCCTGGAC-TCAAGGGAATATGTTCTTGGTTTCTTTTATCCTGGGACAGCTAGTCATCGTAGTTACAGAGGATTATCTCATTATCTTCATTACTCATCGTCATCCCAGAGACCCTTGATGAAGAGCTTTTAGATAAAAC--GAGTAGAGTGTCATTCAGCCAGTTCCATAGCACCAGCAGTTCTTGTTGAATGGTGTTCGGTTAGTGAACAG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3076673 250 - 7082604 TTTTGTACTGCTTTCATTTGTAATAGTCAAAA-ACTTGACTCCTTGGAC-TCAAGGGAATATGATCTTGGTTTCTTTTATCCTGGGACAGCTGGTCATTGTAGTAGCAAAGGATTGTCTCATTGTCTTTATTACTCATAGTCATCCCAGAGACCCTCGATTAAGAGCTTTTAGATAAAACATGAGTAGGGTGTCATTCGGTCCGCTCAGTAGCACCAGCTGCGC-TGTGGAGTGGTGGTCTGTTAGTGATCAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 562136 250 + 5243153 TTTTGTACTGCTTTCATTTGTAATAGACAAAA-ACTTGACTCCTTGGAC-TCAAGGAAATATGATCTTGGTTTCTTTTATCTTGGGACAGCTGGTCATTGTAGTGGCAAAGGATTGTCTCATTATCTTCATTAACCGTTGTCATCCCAGAGACCCTTGATTAAGAGCTTTTAGATAAAACATGAGCAGGGTGTCGTTCGGTCCGCTCAGTAGCACCAGCAGCGC-TGTTGAGTGGCGTTCTGTTAGTGATCAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1895757 249 - 1938448 TTTTGTACTGCTTTCATTCGTAATAGTCAAAA-ACTTGATTCCTTGGAC-TCAAGGGAATATGATCTTGGTTTCTTTTATTCTGGGACAGCTGGTCATTGTAGTGGCAAAGGATTGTCTCACTATCTTCATTACTCATTGTCATTCCAGAGACCCTT-ATTAAGAGCTTTTAGATAAAACATGAGTAGGGTGTCATTCGGTCCGCTCAGTAGCACCAGCAGTGC-TATTGAGTGGTGTTCTGTTAGTGATCAG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2505355 208 + 5252280 TTGTGCCCTGCTTCTGTTTGAGAGAGTCAGGA-AGTTGAGTCCTGAGAC-TCCAGGGAG---------------------CCTGGG-CTGCTACTCACTGTAGGAGCGAGGAGGGATCTCCTTGTCTCAGTTGCCCACAGTCACCCCAGAGACCCTTG---GAGGGCTTCAGGCTAGCATGGTAGCAGGACAGAGTTTGGTCAGGTCAGTGGCA-CAGCAGCTCCTGGTGAGGG-----------------AG i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e dasNov3.JH580157 522907 0 + 2232271 C e calJac3.chr14 3408155 14238 - 108792865 I a score=1546798.000000 s hg38.chr2_KI270769v1_alt 21574 163 + 120616 TTTTATAGTTTCTGAAAAGG----TGACACACGTTC-AAT--------------ATCAA-------------ATTaacaaataatgt---------gtacgtgagtgtgattgaatatcatgcagccattataaatcatgtcccaagaacatatttgaggatataagaaagtTTTGAGT----AAATGATACAAGACACTGTATGTTT s panTro5.chr2A 3476044 163 + 111504155 TTTTATAGTTTCTGAAAAGG----TGACACACGTTC-AAT--------------ATCAA-------------ATTaacaaataatgt---------gtacgtgagtgtgattgaatatcatgcagccattataaatcatgtcccaagaaaatatttgaggatataagaaagtTTTGAGT----AAATGATACAAGACACTGTATGTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3345661 163 + 114371477 TTTTATAGTTTCTGAAAAGG----TGACACACGTTC-AAT--------------ATCAA-------------ATTaacaaataatgt---------gtacgtgagtgtgattgaatatcatgcagccattataaatcatgtcccaagaaaatatttgaggatataagaaagtTTTGAGT----AAATGATACAAGACACTGTATGTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 219259 162 + 637652 TTTTATAGTTTCTG-AAAGG----TGACACACGTTC-AAT--------------ATCAA-------------ATTaacaaataatgt---------gtacgtgagtgtgattgaatatcatgcagccattataaatcatatcccaagaaaatatttgaggatataagaaagttttgagt----aaatgatataaGACACTGTATGTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3019827 168 + 81552678 TTTTATAGTTTCTGAAAAGGTGACTGACACATGTTCAAAT--------------ATCAG-------------ATTaacaaatgatgt---------gtacgtgtgtgtgatggaatatcatgcagccattataaatcatgtcccaagaaaatatttgaggatataagaaagtTTTGAGT----AAAGGATACAAGACAGTGTATGTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3277797 163 + 108979918 TTTTCTAGTTTCTGAAAAGG----TGACACATGTTCAAAT--------------ATCAA-------------ATTaacaaataatgt---------gcacgtgtgtgtgattgaatttcatgcagccattataaatcatgtcccaagaaaatatttgaggatataagaaTG-TTTGAGT----AAAGGATACAAAACAGTGTATATTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4990881 163 - 111193037 TTTTCTAGTTTCTGAAAAGG----TGACACACGTTCAAAT--------------ATCAA-------------ATTaacaaataatgt---------gcacgtgtgtgtgattgaatttcatgcagccattataaatcatgtcccaagaaaatatttgaggatataagaaag-tTTGAGT----AAAGGATACAAAACAGTGTATATTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3385297 163 + 3644372 TTTTCTAGTTTCTGAAAAGG----TGACACATGTTCAAAT--------------ATCAA-------------ATTaacaaataatgt---------gcacgtgtgtgtgattgaatttcatgcagccattataaatcatgtcccaagaaaatatttgaggatataagaaag-tTTGAGT----AAAGGATACAAAACAGTGTATATTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3338700 163 - 10304083 TTTTCTAGTTTCTGAAAAGG----TGACACATGTTCAAAT--------------ATCAG-------------ATTaacaaataatgt---------gcacgtgtgtgtgattgaatttcatgcagccattataaatcatgtcccaaggaaatatttgaggatataagaaag-tTTAAGT----AAAGGATACAAAACAGTGTATGTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3422528 163 - 107702431 TTTTATAGTTTCTGAAAAGG----TGACACATGTTCAAAT--------------ATCAA-------------ATTaacaaataatgt---------gcacgtgtgtgtgattgaatttcatgcagccattataaatcatgtcccaagaaaatatttgaggatataagaaag-tTTGAGT----AAAGGATACAAAACAGTGTATGTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 953382 163 + 1565135 TTTTCTAGTTTCTGAAAAGG----TGACACATGTTCAAAT--------------ATCAA-------------ATTAACAAATAATGT---------GCACGTGTGTGTGACTGAATTTCATGCAGCCATTATAAATCATGTCCCAATAAAATATTTGAGGATATAAGAAAG-TTTGAGT----AAAGGATACAAAACAGTGTATGTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3329081 163 - 13651311 TTTTATAGTTTCTGAAAAGG----TGACACATGTTCAAAT--------------ATCAA-------------ATTaacaaataatgt---------gtacgtgtgtgtgattgaatttcatgcagccattataaatcatgtcccaagaaaatatttgaggatataagaaag-tTTGAGT----AAAGGATACAAAACAGTGTATGTTT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3076923 164 - 7082604 TTTTATATTTTCTGAAAAGG----TGACACATGTTCAAAT--------------ATCAA-------------ATTAACAAATAATGT---------GTACTTTTGTGTGATTAGATATCATGCAGCCATTATAAATCATGTCCCAAGAAAATATTTGAAGATATAAGGAAGTTTTGAGT----GAAGGATACAAAACAGTATATGTTA i saiBol1.JH378218 C 0 I 2 s cebCap1.NW_016107454v1 562386 164 + 5243153 TTTTATATTTTCTGAAAAGG----TAACACATGTTCAAAT--------------ATCAA-------------ATTAACAAATAATGT---------GTACTTTTGTGTGATTAGATATCATGCAGCCATTATAAATCATGTCCCAAGAAAATTTTTGAAGATATAAGGAAGTTTTGAGT----GAAGGATACAAAACAGTATATGTTT i cebCap1.NW_016107454v1 C 0 I 314 s aotNan1.NW_018507213v1 1896006 162 - 1938448 TTTTATATTTTCTGAAAAGG----TGACACATGTTCAAAT--------------ATCAA-------------ATTAACAAATAATGT---------GTACTTT--TGTGATTGGATATCATGCAGCCATTATAAATCATGTCCCAAGAAAATATTTGAAGATGTAAGGAAGTTTTGAGT----GAAGGATACAAAACAGTATATGTTT i aotNan1.NW_018507213v1 C 0 I 3 s otoGar3.GL873658 2505563 176 + 5252280 TTCTGCAGCTTCTGGAGAGC----TAACCCACCTGCAGATGTACAAGGTCGGGGATCCA-------------ATTAAT-AATGATGG---------CTACATTTGTGTTATTGAATATCAGGCA-CCGTTAAAAATCATGTTTTAGGAAAATATTAGAGGATACAAGAAAATTTTAAGT----TAACGATACGAAACtttttcctttt i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 522907 187 + 2232271 TTTTATATTTTTTGAAAAAC----TAACATTTATTCAGAT--------------ACCCAAAAGTAGAACATGATTAACAAAgtatgtatatgtatagtatatgtatagtatTGAATACTATGCAG-CATTAGAAATTAGGTCCTAAGAAGACACTTGAGG-TTTAGGAAAA-TTTGAATGAAAAAAGGATACAAAGCAGTTTATATTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=-1231.000000 s hg38.chr2_KI270769v1_alt 21737 6 + 120616 TTTT-AA-- s panTro5.chr2A 3476207 6 + 111504155 TTTT-AA-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3345824 6 + 114371477 TTTT-AA-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 219421 7 + 637652 TTTTAAA-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3019995 7 + 81552678 TTTTTTA-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3277960 5 + 108979918 TTT--GA-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4991044 5 - 111193037 TTT--GA-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3385460 5 + 3644372 TTT--GA-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3338863 5 - 10304083 TTT--GA-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3422691 5 - 107702431 TTT--GA-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 953545 5 + 1565135 TTT--GA-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3329244 5 - 13651311 TTT--GA-- i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3077089 5 - 7082604 TTT--AA-- i saiBol1.JH378218 I 2 C 0 s aotNan1.NW_018507213v1 1896171 5 - 1938448 AAA--GA-- i aotNan1.NW_018507213v1 I 3 C 0 s otoGar3.GL873658 2505739 5 + 5252280 ttt--ga-- i otoGar3.GL873658 C 0 I 220 s dasNov3.JH580157 523094 6 + 2232271 -AT--GAAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e cebCap1.NW_016107454v1 562550 314 + 5243153 I e calJac3.chr14 3408155 14238 - 108792865 I a score=74056.000000 s hg38.chr2_KI270769v1_alt 21743 11 + 120616 --AAAAAGACGAC s panTro5.chr2A 3476213 11 + 111504155 --AAAAAGATGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3345830 11 + 114371477 --AAAAAGACGAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 219428 11 + 637652 --AAAAAGACAAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020002 11 + 81552678 --AAAAACATGAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3277965 11 + 108979918 --AAAGAGACGAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4991049 11 - 111193037 --AAAGAGACGAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3385465 11 + 3644372 --AAAGAGACGAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3338868 11 - 10304083 --AGAGAGATGAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3422696 11 - 107702431 --AAAGAGATGAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 953550 11 + 1565135 --AAAGAGATGAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3329249 11 - 13651311 --AAAGAGATGAC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3077094 11 - 7082604 --AAAAAGATTAG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1896176 11 - 1938448 --AAAAAGATTAG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2505964 11 + 5252280 --AAAAAGATGAC i otoGar3.GL873658 I 220 C 0 s dasNov3.JH580157 523100 11 + 2232271 AAGAAGAAATA-- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e cebCap1.NW_016107454v1 562550 314 + 5243153 I e calJac3.chr14 3408155 14238 - 108792865 I a score=3441270.000000 s hg38.chr2_KI270769v1_alt 21754 402 + 120616 --------AAGGATGCATCTGAGAATAC----------TGTGCCATTGTCCACAGTTGACTTTCTTTTTTCACTTCATAC-TTACTG-TTTGTA-------CTATTCC-ACAGTGTGCAC-AGGGATGAGGTGGTAGAT-GGGGGTGTTAGCTAACTCTGTTGAAGCAGCTAACCTGCCTGACAGTACTGTAAGTGTTTAAAAGGTGTCAGTATGCGTAAT-------------------CATCTCACCAGCACCCGCCACCTTAGCCTGCTGTTTCTGCTGTATCCTCTCAGTTAGCTTACGATAGTACCCATTTGCCCTGGCCAGAATCCAGGA-CTTTTACCTCCTAAATAATTCATATGAGTGTTTGTCTCCTCCA----CCCTGCCCCTCCCCTCCTGTGCTAGTTCAGG-CCTTGTTTCCTTGTGCCTTGTTCACTAAG---CCAGCTCA-GTAT s panTro5.chr2A 3476224 402 + 111504155 --------AAGGATGCATCTGAGAATAC----------TGTACCATTGTCCACAGTTGACTTTCTTTTTTCACTTCATAC-TTACTG-TTTGTA-------CTATTCC-ACAGTGTGCAC-AGGGATGAGGTGGTAGAT-GGGGGTGTTAGCTAACTCTGTTGAAGCAGCTAACCTGCCTGACAATACTGTAAGTGTTCAAAAGGTGTCAGTATGCGTAAT-------------------CATCTCACCAGCACCCGCCACCTTAGCCTGCTGTTTCTGCTGTATCCTCTCAGTTAGCTTACGATAGTACCCATTTGCCCTGGCCAGAATCCAGGA-CTTTTACCTCCTAAATAATTCATATGAGTGTTTGTCTCCTCCA----CCCTGCCCCTCCCCTCCTGTGCTAGTTCAGG-CCTTGTTTCCTTGTGACTTGTTCACTAAG---CCAGCTCA-GTAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3345841 402 + 114371477 --------AAGGATGCATCTGAGAATAC----------TGTACCATTGTCCACAGTTGACTTTCTTTTTTCACTTCATAC-TTACTG-TTTGTA-------CTATTCC-ACAGTGTGCAC-AGGGATGAGGTGGTAGAT-GGGGGTGTTAGCTAACTCTGTTGAAGCAGCTAACCTGCTTGACAATACTGTAAGTGTTCAAAAGGTGTCAGTATGCGTAAT-------------------CATCTCACCAGCACCCGCCACCTTAGCCTGCTGTTTCTGCTGTATCCTCTCAGTTAGCTTACGATAGTACCCATTTGCCCTGGCCAGAATCCAGGA-CTTTTACCTCCTAAATAATTCATATGAGTGTTTGTCTCCTCCA----CCCTGCCCCTCCCCTCCTGTGCTAGTTCAGG-CCTTGTTTCCTTGTGACTTGTTCACTAAG---CCAGCTCA-GTAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 219439 398 + 637652 --------AAGGATGCATCTGAGAATAC----------TGTACCATTGTCCACAGTTGACTTTCTTTTTTCACTTCATAC-TTACTG-TTTGTA-------CTATTCC-ACAGTGTGCAC-AGGGATGAGGTCGTAGAT-GGGGGTGTTAGCTAACTCTGTTGAAGCAGCTAACCTGCCTGACAATACC----GTGTTTAAAAGGTGTCAGTATGCGTAAT-------------------CATCTCACCAGCACCCGCCACCTTAGCCTGCGGTTTCTGCTGTATCTTCTCAGTTAGCTTACGATAGTACCCATTTGCCCTGGCCAGAATCCAGGA-CTTTTACCTCCTAAATAATTCATATGAGTGTTTGTCTCCTCCA----CCCTGCCCCTCCCGTCCTGTGCTAGTTCAGG-CCTTGTTTCCTTGTGCCTTGTTCACTAAG---CCAGCTCA-GTAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020013 403 + 81552678 --------CAGGATGCATCTGAGAATAC----------TGTATCATTGTCCACAGTTGACTTTCTTTTTTCACTTCATAC-TTACTG-TTTGTA-------CTATTCC-ACAGTGTGCAC-AGGGATGAGGTGGTAGATAGGGGGTGGTAGCTAACTCTGTTGAAGCAGCTAACCTGCCTGACAGTACTGTAAGTGTTTAAAAGGTGTCAGTATGCGGAAT-------------------CATCTCACCAGCACCCGCCACCTTAGCCTGCTGTTTCTGCTGTATCCTTTCAGTTAGCTTACGATAGTACCCATTTGCCCTGGCCAGAATCCAGGA-CTTTTACCTCCTAAATAATTCATATGAGTATTTGTCTCCTCCT----CCCTGCCCCTCCCCTCCTGTGCTAGTTCAGG-CTTCGTTTCCTTGTGCCTTGTTCACTAAG---CCAGCTCA-GTAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3277976 404 + 108979918 --------AAGGATGCATCTGAGAATAC----------TGCATCATTGTCCACAGTTGACTTTCTTGTTTCACTTGATACTTTACGG-TTTGTA-------TTATTCC-ACAGTGTGCAC-AGGGATGAGGTGGTAGATGGGGGGTGTTAGCTAACTCTGTTTAAGCAGCTAACCTGCCTGGCAGTACTGTGAGTGTTTAAAAGGTGTCAGTTTGCATAAT-------------------CATCTCACCAGCACCCACCACCTTAGCCTGCTGTTTCTGCTGTGTCCTCTCAATTAGCTTATGGTAGTACCCGTTTGCCCTGGCCAGAATCCAAGA-CTTTTACCTCCTAAATAATTCATATGAGTGTTTGTCTCCTCCA----CCCTGCCCCTCTGCTCCTATGCTAGTTCAGG-CCTTGTTTCTGTGTGCCTTGTTCACGAAG---CCAGCTCA-GTAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4991060 404 - 111193037 --------AAGGATGCATCTGAGAATAC----------TGCATCATTGTCCACAGTTGACTTTCTTGTTTCACTTGATACTTTACGG-TTTGTA-------TTATTCC-ACAGTGTGCAC-AGGGATGAGGTGGTAGATGGGGGGTGTTAGCTAACTCTGTTTAAGCAGCTAACCTGCCTGGCAGTACTGTGAGTGTTTAAAAGGTGTCAGTTTGCATAAT-------------------CATCTCACCAGCACCCACCACCTTAGCCTGCTGTTTCTGCTGTGTCCTCTCAATTAGCTTATGGTAGTACCCGTTTGCCCTGGCCAGAATCCAAGA-CTTTTACCTCCTAAATAATTCATATGAGTGTTTGTCTCCTCCA----CCCTGCCCCTCTGCTCCTGTGCTAGTTCAGG-CCTTGTTTCTGTGTGCCTTGTTCACGAAG---CCAGCTCA-GTAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3385476 404 + 3644372 --------AAGGATGCATCTGAGAATAC----------TGCATCATTGTCCACAGTTGACTTTCTTGTTTCACTTGATACTTTACGG-TTTGTA-------TTATTCC-ACAGTGTGCAC-AGGGATGAGGTGGTAGATGGGGGGTGTTAGCTAACTCTGTTTAAGCAGCTAACCTGCCTGGCAGTACTGTGAGTGTTTAAAAGGTGTCAGTTTGCATAAT-------------------CATCTCACCAGCACCCACCACCTTAGCCTGCTGTTTCTGCTGTGTCCTCTCAATTAGCTTATGGTAGTACCCGTTTGCCCTGGCCAGAATCCAAGA-CTTTTACCTCCTAAATAATTCATATGAGTGTTTGTCTCCTCCA----CCCTGCCCCTCTGCTCCTGTGCTAGTTCAGG-CCTTGTTTCTGTGTGCCTTGTTCACGAAG---CCAGCTCA-GTAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3338879 404 - 10304083 --------AAGGATGCATCTGAGGATCC----------TGCATCATCGTCCACAGTTGACTTTCTTGTTTCACTTCATACTTTACGG-TTTGTG-------TTATTCC-ACAGTGTGCAC-AGGGATGAGGTGGTAGATAGGGGGTGTTAGCTAACTCTGTTTAAGCAGCTAACCTGCCTGACAGTATTGTGAGTGTTTAAAAGGTGTCAGTTTCCATAAT-------------------CATCTCACCAGCACCCACCACCTTAGCCTGCTGTTTCTGCTGTGTCCTCTCAATTAGCTTATGGTAGTACCCGTTTGCCCTGGCCAGAATCCAAGA-CTTTTACCTCCTAAATAATTCATATGAGTGTTTGTCTCCTCCA----CCCTGCCCCTCTGCTCCTGTGCTAGTTCAGG-CCTTGTTTCTGTGTGCCTTGTTCACGAAG---CCAGCTCA-GTAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3422707 404 - 107702431 --------AAGGATGCATCTGAGAATAC----------TGCATCATTGTCCACAGTTGACTTTCTTGTTTCACTTCATACTTTACTG-TTTGTA-------TTATTCC-ACAGTGTGCAC-AGGGATGAGGTGGTAGATAGCGGGTGTTAGCTAACTCTGTTTAAGCAGCTAACCTGCCTGACAGTACTGTGAGTGTTTAAAAGGTGTCAGTTTGCGTAAT-------------------CATCTCACCAGCATCCACCACCTTAGCCTGCTGTTTCTGCTGTGTCCTCTCAATTAGCTTATAGTAGTACCCGTTTGCCCTGGCCAGAATCCAAGA-CTTTTACCTCCTAAATAATTCAGATGAGTGTTTATCTCCTCCA----CCCTGCCCCTCTGCTCCTGTGCTAGTTCAGG-CCTTGTTTCTTTGTGTCTCGTTCACGAAG---CCAGCTCA-GTAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 953561 404 + 1565135 --------AAGGATGCATCTGAGAATAC----------TGCATCATTGTCCACAGTTGACTTTCTTGTTTCACTTCATACTTTACGG-TTTGTA-------TTATTCC-ACAGTGTGCAC-AGGGATGAGGTGGTAGATAGGGGGTGTTAGCTAACTCTGTTTAAGCAGCTAACCTGCCTGACAGTACTGTGAGTGTTTAAAAGGTGTCAGTTTGCATAAT-------------------CATCTCACCAGCACCCACCACCTTAGCCTACTGTTTCTGCTGTGTCCTCTCAATTAGCTTATGGTAGTACCCGTTTGCCCTGGCCAGAATCCAAGA-CTTTTACCTCCTAAATAATTCATATGAGTGTTTGTCTCCTCCA----CCCTGCCCCTCTGCTCCTGTGCTAGTTCAGG-CCTTGTTTCTGTGTGCCTTGTTCACGAAG---CCAGCTCA-GTAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3329260 410 - 13651311 --------AAGGATGCGTCTGAGAATAC----------TGTATCACTGTCCACAGTTG-------------ACTTCATACTTTACTG-TTTGTG-------TTATTCC-ACAGTGTGCAC-AGGGATGAGGTGGTAGATAGGGGGTGTTAGCTAACTCTGTTTAAGCAGCTAACCTGCCTGACAGTACTGTGAGTGTTTAAAAGGTGTCAGTTTGCGTCATCGTCTCACCAGCTTGTAGCCATCTCACCAGCACCCACCACCTTAGCCCGCTGTTTCTGCTGTGTCCTCTCAATTAGCTTACGGTAGTACCCATTTGCCCTGGCCAGAAGCCAAGA-CTTTTACCTCCTAAATAATTCATACGAGTGTTTGTCTCCTCCA----CCCTGCCCCTCTGCTCCTGTGCTAGTTCGGG-CCTTGTTTCTTTGTGCCTTGTTCATGAAG---CCAGCTCA-GTAT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3077105 407 - 7082604 --------AAGGATACATATGAGGATAC----------TGTGTCATTGTCCACAGTTGACTTTGTTTTTTCACTTCATACTTGACTGCTTTGTACTTTGTGCTATTCC-ACAAGGTGCAC-AGAGGTGAGACAGTAGAT-GGGTGTGTTCGCTAACTCTGTTTAAGCAGCTAACCTGCCTGACAGAACTGTATGTGTTTCAAAGGTGTCCGTATGCGGAAT-------------------CATCTCACCAGCACCCACCACCTTCG----CTGTTTCTGCTGTATCCTCTCAGTCAGCTTATGGTAGTACCCATCAGCGCTGGCCAGAACCCAGGA-CTTCTGTCTCCTGTATAGTTCACATGAACGTTCGTCTCCTCTG-----CCTGCGCCTCCCCTCCTGTGCTAATTCAGGCCCTTGTTTCTTGGTGCCTTGTTCGCTAAG---CTAGCTCA-GTGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 562864 403 + 5243153 --------aaGGATACATATGAGAATAC----------TGTATGATTGTCCACAGTTGATTTTGTTTTTTCACTTCATACTTGGCTGCTTTGTA-------CTATTCC-ACAAGTTGCAC-AGAGGTGAGACAGTAGAT-GGG-GTGTTCGCTAACTCTGTTTAAGCAGCTAACCTGCCTGACAGAACTGTGTGTGTTTCAAAGGTGTGTGTGTGCGGAAT-------------------CATCTCACCAGCACCCGCCGCCTTGGCCGACTGTTTCTGCCGTACCCTCTCAGTCAGCTTACGGTAGTACCCATCAGCGCTGGCCAGAACCCAGCG-CTTCTGCCTCCTGCATAGTTCACATGAACGTTCGCCTCCTCTG-----CCTGCGCCTCCCCTCCTGTGCTAATTCAGGCCCTTGTTTCTTTGTGCCTTGTTTGCTAAG---CTAGCTCA-GTGT i cebCap1.NW_016107454v1 I 314 C 0 s aotNan1.NW_018507213v1 1896187 394 - 1938448 --------AAGGTTACATATGAGAATAC----------TGTATCATTGTCCACAGTTGACTTTGTTTTTTCACTTCATACTTGACTGCTTTGTA-------CTATTCC-ACAAGGTGCAC-GGAGGTGAGCCAGTAGAT-GGGGGTGTTACCTAACTCTGTTTAAGCAGCTAACCTGCCCGACAGAAC------TGTTTCTAAGGTATCCGTATGCGAAAT-------------------CATCTCACCAGCACCCGCCGCCTTGGCTGACTGTTTCTGCCGTATCCTCTCAGTTAGCTTATGGTAGTAACCATTAGCGCTGGCCAGAACCCAGGG-CTTCTGCCTCCTACATAGTTCATGTGAATAT----CTCCTCCG-----CCTGCGCCTCCCCTCCTGTGCTAATTCAGGCCCTTGTTTCTTTGTGCCTTGTTTGCTAAG---CTAGCTCA-GTGT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2505975 297 + 5252280 --------AAGGATACATATGAGAATACTT--------TGTGTAACTATTCG----TGATTTTGGTTTCCCACTTTATGCATTGT---TTTCTA-------AGAGTCCTACAGTGTGCACAAGGGGTGGGGTGGGGTGCGGAGGGTAACAGCTGATGCC-------------ACCTGTGTGACAGCCAGGTGTGTATGGAGGAGGTTCTGGTGCACATGAT-------------------GATCCCGTCGGCACCCACCACCTCACCGTGCTGCTCTCCCGGTGTCCCCTCCGTTAGCTGATGCT-------------------CACAGCCTGGGA------------------------------------------------------------------------------A-TCTTGGTTTTTTGTGTGTGATTCACTAAC---CTCACTCA-GGTC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 523111 417 + 2232271 AAGAATGAAAGAATATATACCAGAATATTCATAATGGATATATCCTAGTTCACAGTTGACTTCCTTTTCCTTTTTCATACTATACTC-TTTTCA-------AT-TTCT-ACAATATGGAC-AAGGGGTGGGTAGCATGTGGTGGGTGTTAGATAATATATTTTAAAAGG----CATGCATGACAGTAACATCAGTATTTAACAGGTATCAGTACATACTAT-------------------ATTTTCACTAGTACCCACTAccctaacctgctgcttcccatgtattctcgatattagctaatgatagtgcccagttaccctagtcagaaacctggaaatttttgctcctatttAATACAAATG----------TTCTCCAGTATCACATCCCCACCACTCCTATACTAAGTCAAGCCCATATTACCCCATGTCTATTTCACTATTCTCCTATCTCATGgat i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 927335 2860 + 1238772 I e calJac3.chr14 3408155 14238 - 108792865 I a score=81407.000000 s hg38.chr2_KI270769v1_alt 22156 8 + 120616 -------CCttttta s panTro5.chr2A 3476626 8 + 111504155 -------CCttttta i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3346243 8 + 114371477 -------CCttttta i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 219837 8 + 637652 -------CCttttta i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020416 8 + 81552678 -------CCTTTGTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3278380 8 + 108979918 -------CCttttta i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4991464 8 - 111193037 -------CCttttta i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3385880 8 + 3644372 -------CCttttta i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3339283 8 - 10304083 -------CCttttta i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3423111 8 - 107702431 -------CCTTTTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 953965 8 + 1565135 -------CCttttta i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3329670 8 - 13651311 -------CCttttta i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3077512 8 - 7082604 -------CCtcttta i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 563267 8 + 5243153 -------CCttttta i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1896581 8 - 1938448 -------CCttttta i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 930195 8 + 1238772 -------CCtttttg i proCoq1.NW_012151163v1 I 2860 C 0 s otoGar3.GL873658 2506272 6 + 5252280 ---------CCtttg i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 523528 15 + 2232271 cttcgaacatttttg i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e calJac3.chr14 3408155 14238 - 108792865 I a score=114934.000000 s hg38.chr2_KI270769v1_alt 22164 10 + 120616 ttcacgtaat s panTro5.chr2A 3476634 10 + 111504155 ttcacgtaat i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3346251 10 + 114371477 ttcacgtaat i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 219845 10 + 637652 ttcacgtaat i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020424 10 + 81552678 TTCACATAAT i nomLeu3.chr19 C 0 I 100 s rheMac8.chr13 3278388 10 + 108979918 tccacatgat i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4991472 10 - 111193037 tccacatgat i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3385888 10 + 3644372 tccacatgat i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3339291 10 - 10304083 tccacatgat i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3423119 10 - 107702431 TACACATGat i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 953973 10 + 1565135 tccacatgat i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3329678 10 - 13651311 tccacatgat i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3422393 10 - 108792865 TTCACATAat i calJac3.chr14 I 14238 C 0 s saiBol1.JH378218 3077520 10 - 7082604 ttcacataat i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 563275 10 + 5243153 ttcacataat i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1896589 10 - 1938448 ttcacataat i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 930203 10 + 1238772 ttcacataat i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2506278 10 + 5252280 ttcgtgtagt i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 523543 10 + 2232271 ctcacataaa i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I a score=3945247.000000 s hg38.chr2_KI270769v1_alt 22174 323 + 120616 accccccaaagaattag-aaaactaggtaccc-c-t-cacacatttttaagctatctaaaatgttttatcataaatttaaatggtttcaaaggatataattaatttttagcacatagtaTGTTGCAtatgtgatttaattatatttccatcagca-gtaggactgcagattcagctcattcag-tttgggaa----------atgtgacccacttggcagccagtacccatcgtaaccagtcactcaaaccaggcacgtgtgatctcagaagaaatctcacttcgtcgtgtgatccagataaGCATGGCAGTGGGGTCCTGGCAGCAGTCACTCCACTC s panTro5.chr2A 3476644 323 + 111504155 accccccaaagaattag-aaaactaggtaccc-c-t-cacacatttttaagctatctaaaatgttttatcataaatttaaatggtttcaaaggatataattaatttttagcacatagtaTGTTGCAtatgtgatttaattatatttccatcagca-gtaggactgcagattcagctcattcag-tttgggaa----------atgtgacccacttggcagccagtacccatcgtAACCAGTCACTCAAACCAGGCACGTGTGATCTCAGAAGAAATCTCACTTCGTCGTGTGATCCAGATAAGCATGGCAGTGGGGTCCTGGCAGCAGTCACTCCACTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3346261 323 + 114371477 accccccaaagaattag-aaaactaggtaccc-c-t-cacacatttttaagctatctaaaatgttttatcataaatttaaatggtttcaaaggatataattaatttttagcacatagtaTGTTGCAtatgtgatttaattatatttccatcagca-gtaggactgcagattcagctcattcag-tttgggaa----------atgtgacccacttggcagccagtacccatcgtaaccagtcactcaaaccaggcacgtgtgatctcagaagaaatctcacttcgtcgtgtgatccagataaGCATGGCAGTGGGGTGCTGGCAGCAGTCACTCCACTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 219855 322 + 637652 accccccaaagaattag-aaaactaggtaccc-c-t-cacacatttttaagctatct-aaatgttttatcataaatttaaatggtttcaaaggatataattaatttttagcacatagtaTGTTGCAtatgtgatttaattatatttccatcagca-gtaggactgcagattcagctcattcag-tttgggaa----------atgtgacccacttggcagccagtacccatcgtaaccagtcactcaaaccaggcacgtgtgatctcagaagaaatctcacttcgtcgtgtgatccagataaGCATGGCAGTGGGGTCCTGGCAGCAGTCACTCCACTC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3278398 324 + 108979918 accccccaaagaattag-aaaactaggta-cc-c-t-cagacatttttaagctatctaaaatgttttatcataaatttaaatggtttcaaaggatataattaatttttagcacatagtaTGTTGCAtatgtgatttaattatatttccatcagcacgtaggactgcagattcagctcattcagttttgggaa----------atgtgacccacttggcagccagtacccatcgtaaccagtcactcaaaccaggcacgtgtgatctcaaaagaaatctcacttcgtcgtgtgatccagataaTCATGGCAGTGGGGTCCTGGCAGCAGTCACTTCACTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4991482 325 - 111193037 accccccaaagaattag-aaaactaggtaccc-c-t-cagacatttttaagctatctaaaatgttttatcataaatttaaatggtttcaaaggatataattaatttttagcacatagtaTGTTGCAtatgtgatttaattatatttccatcagcacgtaggactgcagattcagctcattcagttttgggaa----------atgtgacccacttggcagccagtacccatcgtaaccagtcactcaaaccaggcacgtgtgatctcaaaagaaatctcacttcgtcgtgtgatccagataaTCATGGCAGTGGGGTCCTGGCAGCAGTCACTTCACTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3385898 324 + 3644372 a-cccccaaagaattag-aaaactaggtaccc-c-t-cagacatttttaagctatctaaaatgttttatcataaatttaaatggtttcaaaggatataattaatttttagcacatagtaTGTTGCAtatgtgatttaattatatttccatcagcacgtaggactgcagattcagctcattcagttttgggaa----------atgtgacccacttggcagccagtacccatcgtaaccagtcactcaaaccaggcacgtgtgatctcaaaagaaatctcacttcgtcgtgtgatccagataaTCATGGCAGTGGGGTCCTGGCAGCAGTCACTTCACTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3339301 325 - 10304083 accccccaaagaattag-aaaactaggtaccc-c-t-cagacatttttaagctatctaaaatgttttatcataaatttaaatggtttcaaaggatataattaatttttagcacatagtaTGTTGCAtatgtgatttaattatatttccatcagcacgtaggactgcagattcagctcattcagttttgggaa----------atgtgacccacttggcagccagtacccatcgtaaccagtcactcaaaccaggcacgtgtgatctcaaaagaaatctcacttcgtcgtgtgatccagataaTCATGGCAGTGGGGTCCTGGCAGCAGTCACTTCACTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3423129 325 - 107702431 gccccccaaagaattag-aaaactaggtaccc-c-t-cagacatttttaagctatctaaaatgttttatcataaatttaaatgctttcaaaggatataattaatttttagcacatagtaTGTTGCAtatgtgatttaattatatttccatcagcacgtaggactgcagattcagctcattcagttttgggaa----------atgtgacccacttggcagccagtacccatcgtaaccagtcactcaaaccaggcacgtgtgatctcaaaagaaatctcacttcatcgtgtgatccagataaTCATGGCAGTGGGGTCCTGGCAGCAGTCACTTCACTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 953983 325 + 1565135 accccccaaagaattag-aaaactaggtaccc-c-t-cagacatttttaagctatctaaaatgttttatcataaatttaaatggtttcaaaggatataattaatttttagcacatagtaTGTTGCAtatgtgatttaattatatttccatcagcacgtaggactgcagattcagctcattcagttttgggaa----------atgtgacccacttggcagccagtacccatcgtaaccagtcactcaaaccaggcacgtgtgatctcaaaagaaatctcacttcgtcgtgtgatccagataaTCATGGCAGTGGGGTCCTGGCAGCAGTCACTTCACTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3329688 325 - 13651311 accccgcaaagaattag-aaaactaggtaccc-c-t-cagacattttgaagctatctaaaatgttttatcataaatttaaatggtttcaaaggatataattaatttttagcacatagtaTGTTGCAtatgtgatttaattatatttccatcagcaagtaggactgcagattcagctcattcagttttgggaa----------atgtgacccacttggcagccagtacccatcgtaaccagtcactcaaaccaggcacgtgtgatctcaaaagaaatctcacttcgtcgtgtgatccagataaGCATGGCAGTGGGGTCCTGGCAGCAGTCGCTTCACTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3422403 326 - 108792865 accccccaaagaattag-aaaactaggtacccgc-t-cacacattgttaagctatttaaaatgttttatcataaatttaagtggtttcaaaggatataattaatttttagcacatagtaTGTTGCATGTgtgatttaattatatttccatcagcacgtaggactgcagattcagctcattccgttttgggaa----------atgtgacccacttggcagccagtacacatcgtaaccagtcactcaaaccaggcacgtgtgatctcagaagaaatctcacttcgtcgtgtgatccagatCAGCACGGCAGTGGGGTCCTGGCAGCAGTCACTCCACTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3077530 326 - 7082604 accccccaaagaattag-aaaactaggtaccccc-t-cacacatttttaagctatctaaaatgttttatcataaatttaagtggtttcaaaggatataattaatttttagcacatagtaTGTTGCATGTgtgatttaattatatttccatcagcacgtaggactgcagattcagctcattccgttttgggaa----------atgtgacccacttggcagccagtacgcatcgtaaccagtcactcaaaccaggcacgtgtgatctcagaagaaatctcacttcgtcgtgtgatccagatCAGCACGGCAGTGGGGTCCTGGCAGCCGTCACCCCACTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 563285 326 + 5243153 accccccaaagaattag-aaaactaggtgccccc-t-cacacatttttaagccatctaaaatgttttatcataaatgtaagtggcttcaaaggatataattaatttttagcacatagtaTGTTGCATGTgtgatttaattatatttccatcagcacgtaggactgcagattcagctcattccgttttgggaa----------atgtgacccacttggcagccggtgcacatcgtaaccagtcactcaaaccaggcacgtgcgatctcagaagaaatctcacttcgtcgtgtgatccagatCAGCACGGCAGTGGGGTCCTGGCAGCAGTCACTCCACTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1896599 326 - 1938448 accccccaaagaattag-aagactaggtaccccc-t-cacacatttttaagctatctaaaatgttttatcataaatttaagtggtttcaaaggatataattaatttttagcacatagtaTGTTGCATGTgtgatttaattatatttccatcagcacgtaggactgcagattcagctcattccattttgggaa----------atgtgacccacttggcagccggtacacatcgtaaccagtcactcaaaccaggcacgtgtgatctcagaagaaatctcacttcgtcgtgtgatccagatCAGCACGGCAGTGGGGTCCTGGCAACAGTCACTCCACTC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 930213 325 + 1238772 accccccaaaaaatcag-tcaattcggtaccc-c-ctcacacatttttgagttatttgaaatgtttgatcataaatttaaactgttac-aaggatgtaattaatttttagcacatagtaTGTTGCATGTgtgacttaattatgtttccatcagcacgtaggactgcagattaagctcattcagctttgggaa----------atgcgacccacttggcagccagagcacatcgtacacagtcgctcaaagcaggcacatgttatctcggaagaaatctcacttcatttagtaacccagataaaCACATCGGCGTGATCCTGGCAGCAGTCACTCCACTC i proCoq1.NW_012151163v1 C 0 I 2674 s otoGar3.GL873658 2506288 322 + 5252280 a-cccccaaagaatcag-aaaactaggtactc-c-a-cacacattttttagttatttaaaatgtttgatcataaatttaagctgttg--aaggatataattaatttttagcacatagtGTGTTGCATGTgtgatttaattatatttccagcagcacgtagcagtgcagattaagctcactcagtttggagaa----------atgtgacccacttggcaaccagcacacatcgtaaccagtcactcaaagcagactcgtgttgtcttagaagaaatcttactgcattttgtaatccagataaacatggtggtatgATCCCAGCAGCAGTCACTCCACTC i otoGar3.GL873658 C 0 I 1 s dasNov3.JH580157 523553 334 + 2232271 tcctccaaaataattagaaaaactaggtaccc-cat-gacacatttttaagttatctaaaatgtgtcatcataaatttaagtggttacaaaggatgtaattaattcctagcttattgtatattgCAtatgtgctttaaatatatgtccatcaaaacccaagatggcagattaagctcactccattttggggaaacgcctgccatgtgacctacttggcagttggtactcgtaa-aagcaatccatcagatcaggcatattt--tcttagaagaaatcgcacttcttttttcagtccaaataaacatgtcaatatgATCCTGGCAACAATCGCTGCACTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e nomLeu3.chr19 3020434 100 + 81552678 I a score=1327530.000000 s hg38.chr2_KI270769v1_alt 22497 153 + 120616 -TGGATTT-AGTCCTTAGAATTCATTCTCTC--CCTTCAAAGCCCCCCGGGTTCTTGTCCTCCCC-CCTG-CCGCCACCCTGGGGTCTGCCACTCTGGGGTccagcctctagctccagctccagctcagcctcacccccaccatccccctgaccccatc s panTro5.chr2A 3476967 153 + 111504155 -TGGATTT-AGTCCTTAGAATTCATTCTCTC--CCCTCAAAGCCCCCCGGGTTCCTGTCCTCCCC-CCTG-CCGCCACCCTGGGGTCTGCCACTCTGGGGTccagcctctagctccagctccagctcagcctcacccccaccatccccctgaccccatc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3346584 153 + 114371477 -TGGATTT-AGTCCTTAGAATTCATTCTCTC--CCCTCAAAGCCCCCCGGGTTCTTGTCCTCCCC-CCTG-CCGCCACCCTGGGGTCTGCCACTCTGGGGTccagcctctagctccagctccagctcagcctcacccccaccatccccctgaccccatc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 220177 153 + 637652 -TGGATTT-AGTCCTTAGAATTCATTCTCTC--CCCTCAAAGCCCCCCGGGTTCTTGTCCTCCCC-CCTGCCCGCCACCCTGGGGTCTGCCACTCTGGGGTCcagcctctagctccagctccagctcagcctca-cccCACCATCCCCCTGACCCCATC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3278722 155 + 108979918 -TGGATTT-AGTCCTTAGAATTCATTCTCTC--CCCTCAAAGCCCCCCGGGTTCTTGTCCTCCCCTCCTGCCCGCCACCCTGGGATCTGCCACTCTGGGGtccagcctctagctccagctccagctcagcctcacccccaccatccccctgacctcatc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4991807 155 - 111193037 -TGGATTT-AGTCCTTAGAATTCATTCTCTC--CCCTCAAAGCCCCCCGGGTTCTTGTCCTCCCCTCCTGCCCGCCACCCTGGGATCTGCCACTCGGGGGtccagcctctagctccagctccagctcagcctcacccccaccatccccctgacctcatc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3386222 155 + 3644372 -TGGATTT-AGTCCTTAGAATTCATTCTCTC--CCCTCAAAGCCCCCCGGGTTCTTGTCCTCCCCTCCTGCCCGCCACCCTGGGATCTGCCACTCTGGGGtccagcctctagctccagctccagctcagcctcacccccaccatccccctgacctcatc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3339626 155 - 10304083 -TGGATTT-AGTCCTTAGAATTCATTCTCTC--CCCTCAAAGCCCCCCGGGTTCTTGTCCTCCCCTCCTGCCCGCCACCCTGGGATCTGCCACTCTGGGGtccagcctctagctccagctccagctcagcctcacccccaccatccccctgacctcatc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3423454 155 - 107702431 -TGGATTT-AGTCCTTAGAATTCATTCTCTC--CCCTCAAAGCCCCCCGGGTTCTTGTCCTCCCCTTCTGCCCACCACCCTGGGATCTGCCACTCTGGGGTCcagcctctagctccagctccagctcagcctcacccccaccatccccctgacttcatc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 954308 155 + 1565135 -TGGATTT-AGTCCTTAGAATTCATTCTCTC--CCCTCAAAGCCCCCCAGGTTCTTGTCCTCCCCTCCTGCCCGCCACCCTGGGATCTGCCACTCTGGGGtccagcctctagctccagctccagctcagcctcacccccaccatccccctgacctcatc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3330013 155 - 13651311 -TGGATTT-AGTCCTTAGAATTCATTCTCTC--CCCTCCAAGCCGCCCGGGTTCTTGTCCTCCCCTCCTGCCCGCCACCCTGGGGTCTGCCACTCTGGGGtccagcctctagctccagctccagctcagcctcacccccaccatccccctgacctcatc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3422729 154 - 108792865 -TGGATTG-AGTCCTTAGAATTCGTTCTCTC--CACACAAAGCGCCCTGGGTTCTTGTCCTCCCCTCCTGCCTGCCACTCTGGGGTCTGCCACTCTAGGGTCTGGCCTGTAGCTCCAGCTCCAGCTCAGCCTCACCCCC-TCATGACCCTGACCCCATC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3077856 151 - 7082604 -TGGATTG-AGTCCTTAGAGTTCGTTCTGTC--CCCGCAAAGCCGCCTGGGTTCTTGTCCTCCCCTCCTGCCTGCCACTCCGGGGTCTGCCACTCTAGGGTCTGGCCCGTAGCTCCAGCTCCAGCTCAGCCTCACCCCC--CGTG-CCCCGA-CCCGTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 563611 150 + 5243153 -TAGATTG-AG---TTAGAATTGGTTCTCTC--CCCGCAAAGCCCCCTGGGTTCTTGTCCTCCCCACCTGCCTGCCACTCCGGGGTCTGCCACTCTAGGGTCTGGCCTGTagctccagctccagctcagcctcaccccc--catgcccctgaccccatc i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1896925 153 - 1938448 -TGGATTG-AGTCCTTAGAATTCGTTCTCTC--CCCGCAAAGCCCCCTGAGTTCTTGTCCTCCCCTCCTGCCTGCCACTCCGGGCTCTGCCACTCTGGGGTCTGGCCTGTAGCTGcagctccagctcagcctcaccccc--catgcccctgaccccatc i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2506611 107 + 5252280 -GAGGGTT-AATCCATGGAA-----TATCTC--TTGTCACAGCCCTTGGGTATCCTGTCACTGTCTCCTG----------------------------------------ACCTCCGGCT---GGTCAGCCTCACCCCTGCCATTCCCCCAATCCTGCC i otoGar3.GL873658 I 1 I 1255 s dasNov3.JH580157 523887 121 + 2232271 GTGAATTCGAATCCCTAGAGTTCTTCTGCGCAGCCCTCACAGTGCACCA----CTGATCCCTCCCTCCTACCTGAAACCCTG---------------GGGATCTGCCTGTTGTCCTA-----AGCTCA--------CCTGTCATTTCTC----CACA-- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e nomLeu3.chr19 3020434 100 + 81552678 I a score=643411.000000 s hg38.chr2_KI270769v1_alt 22650 88 + 120616 ccccagcTGTCCCCG-CTGTGCAGTGCCTTGAACGTGCTCTGC-CGTGTGTCGGCCCGTT---TCCTGAATCCT-CAGGCATCAGTGCCTCACA s panTro5.chr2A 3477120 88 + 111504155 ccccagcTGTCCCCG-CTGTGCAGTGCCTTGAACGTGCTCTGC-CATGTGTCGGCCCGTT---TCCTGAATCCT-CAGGCATCAGTGCCTCACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3346737 88 + 114371477 ccccagcTGTCCCTG-CTGTGCAGTGCCTTGAACGTGCTCTGC-CATGTGTCGGCCCGTT---TCCTGAATCCT-CAGGCATCAGTGCCTCACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 220330 88 + 637652 CCCCAGCTGTCCCCG-CTCTGCAGTGCCTTGAACATGCTCTGC-CATGTGTCAGCCCGTT---TCCTGAATCCT-CAGGCATCAGTGCCTCACA i gorGor5.CYUI01015435v1 C 0 I 108 s rheMac8.chr13 3278877 81 + 108979918 ctccagctGTCCCCG-CTCTGCAGTGCCTTGAACGTGCTCTGC-CATGTGTTGGCCCGTTTCCTCCTGAATCCT-CAGGCATCA---------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4991962 81 - 111193037 ctccagctGTCCCCG-CTCTGCAGTGCCTTGAACGTGCTCTGC-CATGTGTTGGCCCGTTTCCTCCTGAATCCT-CAGGCATCA---------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3386377 81 + 3644372 ctccagctGTCCCCG-CTCTGCAGTGCCTTGAACGTGCTCTGC-CATGTGTTGGCCCGTTTCCTCCTGAATCCT-CAGGCATCA---------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3339781 81 - 10304083 ctccagctGTCCCCG-CTCTGCAGTGCCTTGAACGTGCTCTGC-CATGTGTTGGCCCGTTTCCTCCTGAATCCT-CAGGCATCA---------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3423609 81 - 107702431 ctccagcTGTCCCCG-CTCTGCAGTGCCTTGAACGTGCTCTGC-CATGTGTTGGCCCGTTTCCTCCTGAATCCT-CAGGCATCA---------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 954463 81 + 1565135 ctccagctGTCCCCG-CTCTGCAGTGCCTTGAACGTGCTCTGC-CATGTGTTGGCCCGTTTCCTCCTGAATCCT-CAGGCATCA---------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3330168 81 - 13651311 ctccagctGTCCCCG-CTCTGCAGTGCCTTGAACGTGCTCTGC-CATGTGTTGGCCCGTTTCCTCCTGAATCCT-CAGGCATCA---------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3422883 84 - 108792865 CTCCAGCTGCCCCTG-CTCTGCAGTGCCCTGAATGTGCTCTG--CATGTGTTGGCCCATTTCCTCCTGAATTGT-CAGGTGTCAGTGG------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3078007 84 - 7082604 CTCCAGCTGCCCCCG-CTCTGCAGTGCCCTGAGCGTGCTCCG--CGTGTGTTGGCCCATCTCCTCCTGAATGGT-CAGGCGTCGGTGG------ i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 563761 84 + 5243153 ctccagctGTCCCGG-CTCTGCAGTGCCCTGAACGTGCTCCG--CGTGTGTTGGCCCATTTCCTCCTGAATCAT-CAGGCGTCGGTGG------ i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1897078 84 - 1938448 ctccagctgccccCA-CTGTGCAGTGCCCTGAATGTGCTCTG--CATGTGTTGGCCCATTTCCTCCTGAATCAT-CAGGCATCGGTGG------ i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 524008 85 + 2232271 CCCCAGTCACACCCATCTTTCCTGCTTCTTCAGTGCACTCTGCTCGTTTTCCAGTTCATTTCTTCATTAACTATACAAACTTCAA--------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e otoGar3.GL873658 2506718 1255 + 5252280 I e nomLeu3.chr19 3020434 100 + 81552678 I a score=1394770.000000 s hg38.chr2_KI270769v1_alt 22738 199 + 120616 GAGCTGTGTGCCAGCA--GTGTCCTCACAGAGCTGTCAAGCGTGTCCATGCCGTGC-CGCTTGTG-CCTCTGCCCCG-CGAGGGACACCATTCCCC----GTCGTTGACGTGCATTCCTCTTGTTCATCGTGCGAGACTCCCCACCCCTGTGCCACCGGTC-------------------TCGGTGTCTCCCACACTGGAG-TGTCCGTATTTCATAAACACACGTA--------T s panTro5.chr2A 3477208 199 + 111504155 GAGCTGTGTGCCAGCA--GTGTCCTCACAGAGCTGTCAAGCGTGTCCATGCCGTGC-CGCTTGTG-CCTCTGCCCCG-CGAGGGACACCATTCCCC----GTCGTTGACGTGCATTCGTCTTGTTCATCGTGCGAGACTCCCCACCCCTGTGCCACCGGTC-------------------TCAGTGTCTCCCACACTGGAG-TGTCCGTATTTCATAAACACACGTA--------T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3346825 199 + 114371477 GAGCTGTGTGCCAGCA--GTGTCCTCACAGAGCTGTCAAGCGTGTCCATGCTGTGC-CGCTTGTG-CCTCTGCCCCG-CGAGGGACACCATTCCCC----GTCGTTGACGTGCATTCGTCTTGTTCATCGTGCGAGACTCCCCACCCCTGTGCCACCGGTC-------------------TCGGTGTCTCCCACACTGGAG-TGTCCGTATTTCATAAACACACGTA--------T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 220526 198 + 637652 GAGCTGTGTGCCAGCG--GTGTCCTCACAGAGCTGTCAAGTGTGTCCATGCCGTGC-CGCTTGTG-CCTCTGCCCCG-CGAGGGACACCATTCCCC-----TCGTTGACGTGCATTCCTCTTGTTCATCGTGCGAGACTCCCCACCCCTGTGCCACCGGTC-------------------TCGGTGTCTCCCACACTGGAG-TGTCCGTATTTCATAAACACACgta--------t i gorGor5.CYUI01015435v1 I 108 C 0 s rheMac8.chr13 3278958 188 + 108979918 -------GTGCCAGCA--GTGTCCTCGCAGAGCTGTCAAGTGTGTCCAAGCTGTGC-CGCTTGTG-CCTCTGCCCTG-TGAGGGACACCATCCCC------TCGTTCACGTGCATTGCTC-TGTTCATCGTGCGAGACTCCCTG-CCCTGTGCCACCGGTC-------------------TCGGTGTCTCCCACGCTGGAG-TGTCCGTATTTCATAAACACACATA--------T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4992043 186 - 111193037 -------GTGCCAGCA--GTGTCCTCGCAGAGCTGTCAAGTGTGTCCAAGCTGTGC-CGCTTGTG-CCTCTGCCCTG-TGAGGGACACCATCCCC------TCGTTCACGTGCATTGCTC-TGTTCATCGTGCGAGACTCCCTG-CCCTGTGCCACCGGTC-------------------TCGGTGTCTCCCACGCTGGAG-TGTCCGTATTTCATAAACACAC--A--------T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3386458 188 + 3644372 -------GTGCCAGCA--GTGTCCTCGCAGAGCTGTCAAGTGTGTCCAAGCTGTGC-CGCTTGTG-CCTCTGCCCTG-TGAGGGACACCATCCCC------TCGTTCACGTGCATTGCTC-TGTTCATCGTGCGAGACTCCCTG-CCCTGTGCCGCCGGTC-------------------TCGGTGTCTCCCACGCTGGAG-TGTCCGTATTTCATAAACACACATA--------T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3339862 189 - 10304083 -------GTGCCAGCA--GTGTCCTCGCAGAGCTGTCAAGTGTGTCCAAGCTGTGC-TGCTTGTG-CCTCTGCCCTGTTGAGGGACACCATCCCC------TCGTTCACGTGCATTGCTC-TGTTCATCGTGCGAGACTCCCTG-CCCCGTGCCACCGGTC-------------------TCGGTGGCTCCCACACTGGAG-TGTCCGTATTTCATAAACATACATA--------T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3423690 188 - 107702431 -------GTGCCAGCA--GTGTCCTCACAGAGCTGTCAAGTGTGTCCAAGCTGTGC-CACTTGTG-CCCCTGCCCTG-TGAGGGATGCCATCCCC------TCGTTCACGTGCATTGCTC-TGTTCATCGTGCGAGACTCCCTG-CCCCGTGCCACCAGTC-------------------TCGGTGTCTCCCACGCTGGAG-TGTCCGTATTTCATAAACACACATA--------T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 954544 188 + 1565135 -------GTGCCAGCA--GTGTCCTCGCAGAGCTGTAAAGTGTGTCCAAGCTGTGC-CGCTTGTG-CCTCTGCCCTG-TGAGGGACACCATCCCC------TCGTTCACGTGCATTGCTC-TGTTCATCGTGCGAGACTCCCTG-CCCTGTGCCACCAGTC-------------------TCGGTGTCTCCCACGCTGGAG-TGTCCGTATTTCATAAACACACATA--------T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3330249 197 - 13651311 -------GTGCCAGCA--GTGTCCTCACAGAGCTGTCAAGTGTGTCCAAGCTGTGC-CGCTTGTG-CCTCTGCCCTG-TGAGGGACGCCATCCCC------TCGTTCACGTGCATTGCTCTTGTTCATCGTGCGAGACTCCCTG-CCCCGTGCCACCGGTC-------------------TCGGTGTCTCCCACGCTGGAG-TGTCCATATTTCATAAACACACATAtgtgtgtgt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3422967 180 - 108792865 -----------CAGCA--GTGTCCCCACAGGGCTGTCGGGCGTGTCCATGCTGTGC-CACGTGTGCCCTCTGCCCCC-TGAGGGACGGCATCCCCC-----TCATTCACGTGCATTGCTGTTGTTCATCGTGCAAGACTCTCCACCCC-GTGCCGCCGATC-------------------TTGGTTTCTCCCACACTGG-G-TGTCCGTGTTTCATGAAC------A--------C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3078091 180 - 7082604 ------------AGCA--GTGTCCCCACCGGGCTGTCAGGCGCGTCCATGCTGTGC-CACGTGTGCCCTCTGCCCCA-CGAGGGACGCCGTCCCCC-----TTGTTCACGTGCATTGCTCTTGTTCATCACGTGAGACTCTCCGCCCCTGTGCCACTAATC-------------------TTGGTGTCTCCCACGCTGG-G-TGTCCATGTGTCATGAAC------A--------T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 563845 181 + 5243153 -----------CAGCA--GTGTCCCCACAGGGCTGTCAGGCATGTCCATGCTGTGC-CACGTGTGCCCTCTGCCCCA-CGAGGGATGCCGCTCCCT-----TCATTCACGTGCATTGCTCTTGTTCATTGTGCGAGACTCTCCGCCCCCGTGCCACCGATC-------------------TTGGTGTCTCCCATACTGG-G-TGTCCGTGTTTCATGAAC------A--------C i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1897162 178 - 1938448 -----------CAGCA--GTGTCCCCACAGGGCTGTCAGGTGTGTCCATGCTGTGC-CACGTGCACCCTCTGCCCCA-CGAGGGACGCCAT-CCCC-----TCGTTCACGTGCATTGCTCTTGCTCATCGTGCGAGACTCT--GCCCCTGTGCCACCGATC-------------------TTGGCGTCTCCCACACTGG-G-TGTCCGTGTTTCATGAAC------A--------C i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 524093 208 + 2232271 -------GTACTAACAGTGTGTCCTCATGTTCCTTT---GTGTGACCTTTTTGTTCTTTCATGtc-cctctg------tatggaatgcctttctccctactttgtctatctgtattacgcttattcatcctgtaagattcacctcctctgtgatgcttctccctgctccatcacactgggttagtttctcccatacttgagttgtccata--ccat-aacgtacata--------t i dasNov3.JH580157 C 0 I 974 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e otoGar3.GL873658 2506718 1255 + 5252280 I e nomLeu3.chr19 3020434 100 + 81552678 I a score=2534253.000000 s hg38.chr2_KI270769v1_alt 22937 315 + 120616 --GTGTGCATGTATGTA-TTTCTTATGGACATCACGTAC-gttggcccttcatatctacaggttccgcatccacagattccaccacccgcagttgggaaacaCAGTGAGGTATGCACAGCAACCtttcagctgtggttggttgaatccacgcgtgtggaacctgcagatacggaggaccaaccaaggacttgagcagtcatggatttggtatcccaggagtcctggaaccggtccccggcagatagagggTCTGCTGCTTGTGTTTATGCATATGTGTGTATGTAcagacagtccccaacctccgtggtttgacttaag s panTro5.chr2A 3477407 315 + 111504155 --GTGTGCATGCATGTA-TTTCTTATGGACATCACGTAC-gttggcccttcatatctacaggttccgcatccacagattccaccacccgcagttgggaaacaCAGTGAGGTGTGCACAGCAACCtttcagctgtggttggttgaatccacgcgtgtggaacctgcagatacggaggaccaaccaaggacttgagcagtcatggatttggtatcccaggggtcctggaaccggtccccggcagatagagggTCTGCTGCTTGTGTGTATGCATGTGTGTGTATGTAcagacagtccccaacctccgtggtttgacttaag i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3347024 315 + 114371477 --GTGTGCATGTATGTA-TTTCTTATGGACATCACGTAC-gttggcccttcatatctacaggttccgcatccacagattccaccacccgcagttgggaaacaCAGTGAGGTGTGCACAGCAACCtttcagctgtggttggttgaatccacgcgtgtggaacctgcagatacggacgaccaacCaaggacttgagcagtcatggatttggtatcccaggggtcctggaaccggtccccggcagatagagggTCTGCTGCTTGTGTGTATGCATGTGTGTGTATGTAcagacagtccccaacctccgtggtttgacttaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 220724 315 + 637652 --gtgtgcatgtatgta-tgtatTGTGGACATCACGTAC-GTTGGCCCTTCGTATCTACAGGTTCTGCATCCACGGATTCCACCACCCGCAGATGGGAAACACGGTGAGGTGTGCACAGCAGCCTTTCAGGTgtggtcggttgaatccacgcgtgtggaacctgcagatatggaggaccaaccaaggacttaagcagtcatggatttggtatcccgggggtcctggaaccggtccccggcagatagagggTCTGCTGCTTGTGTGTATGCATGTGTGTGTATGTAcagacagtccccaacctccgtggtttgacttaag i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3279146 311 + 108979918 --GTGTGCATGTATGTA-TTTCATATGGACATCACGTAC-GCTGGGCCTTCATATCTACAGGTTCTGCATCCACGGATTCCACCACCCGCAGATGGGAAACACGGTGAGGTGTGCACAGCAGCCtttcagccgtggttggttgaatccacatgtgtggaacctgcagatacggaggaccgactaaggacttgagcagtcatggatctgatatcctggggctcctggaaccgttccccggcagatagagggTCTGCTGCTTGTGTTTACGCATGTGTGTGTATGT----acaacccccaacttatgtggtttggcttaag i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4992229 311 - 111193037 --GTGTGCATGTATGTA-TTTCATATGGACATCACGTAC-GCTGGGCCTTCATATCTACAGGTTCTGCATCCACGGATTCCACCACCCGCAGATGGGAAACACGGTGAGGTATGCACAGCAGCCtttcagccgtggttggttgaatccacatgtgtggaacctgcagatacggaggaccgactaaggacttgagcagtcatggatctggtatcctggggctcctggaaccgttccccggcagatagagggTCTGCTGCTTGTGTTTACGCATGTGTGTGTATGT----acaacccccaacttatgtggtttggcttaag i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3386646 311 + 3644372 --GTGTGCATGTATGTA-TTTCATATGAACATCACGTAC-GCTgggccttcatatctacaggttctgcatccatggattccaccacccgcagatgggaaacaCGGTGAGGTGTGCACAGCAGCCtttcagccgtggttggttgaatccacatgtgtggaacctgcagatacggaggaccgactaaggacttgagcagtcatggatctggtatcctggggctcctggaaccgttccccggcagatagagggTCTGCTGCTTGTGTTTACGCATGTGTGTGTATGT----acaacccccaacttatgtggtttggcttaag i macNem1.NW_012011978v1 C 0 I 302 s cerAty1.NW_012000820v1 3340051 311 - 10304083 --GTGTGCGTGTATGTA-TTTCATATGGACATCACGTAC-GCTGGGCCTTCATATCTACAGGTTCTGCATCCACGGATTCCACCACCCGCAGATGGGAAACACGGTGAGGTGTGCACAGCAGCCtttcagccgtggttggttgaatccacatgtgtggaacctgcagatacggaggaccgactaaggacttgagcagtcatggatctggtatcctggggctcctggaaccgttccccggcagatagagggTCTGCTGCTTGTGTTTACGCATGTGTGTGTATGT----acaatccccaacttatgtggtttgacttaag i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3423878 311 - 107702431 --GTGTGCATGTATGGA-TTTCATATGGACATCACGTAC-GCTGGGCCTTCATATCTACAGGTTCTGCATCCACGGATTCCACCACCCGCAGATGGGAAACACGGTGAGGTGTGCACAGCAGCCtttcagccgtggttggttgaatccacatgtgtggaacctgcagatacggaggaccgaccaaggacttgagcagtcatggatctggtatcctggggctcctggaaccattccccggcagatagagggTCTGCTGCTTGTGTTTACGCATGTGTGTGTATGT----atagtccccaacttctgtggtttgacttgag i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 954732 311 + 1565135 --GTGTGCATGTATGTA-TTTCATATGGACATCACGTAC-GCTGGGCCTTCATATCTACAGGTTCTGCATCCACGGATTCCACCACCCGCAGGTGGGAAACACGGTGAGGTGTGCACAGCAGCCtttcagccgtggttggttgaatccacatgtgtggaacctgcagatacggaggaccgactaaggacttgagcagtcatggatctggtatcctggggttcctggaaccgttccccggcagatagagggTCTGCTGCTTGTGTTTACGCATGTGTGTGTATGT----acaacccccaacttatgtggtttgacttaag i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3330446 311 - 13651311 --gtgtgtgtgtgtgtA-TTTCATATGGACATCACGTAC-ACTGGGCCTTCATATCTACAGGTTCTGCATCCACGGATTCCACCACCCGCAGATGGGAAACACGGTGAGGTGTGCACAGCAACCtttcagctgtggttggttgaatccacatgtgtggaacctgcagatacggaggaccgacGAAGCacttgagcagtcatggatctggtattctggggctcctggacccgttccccggcagatagagggTCTGCTGCTTGTGTTTACGCATGTGTGTGTATGT----acagtccccaacttctgtggtttgacttaag i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3423147 316 - 108792865 --ATGTGCATGTATGTGTTTTAACATGTAGATAATGTAcagttggcccttcatgtct-caggttccgcatccatggattctacgacccacaggtgggaaaCGCACTGAAGTGTGCACAGCAACCtttcagctgtggttggttgaatccatatgtgtggaacctgcagatatgggggatcAGCCTAggacttgagcagtcatggatttggtatcccgggggtcctggaactggtccccagcagacagagggTCTGCTGCGTGTGTTTATGCATCTGTGTGTACATAcagacagtcctcaccttatgtggtttgacttaag i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3078271 313 - 7082604 --GTGTGCATGCGTGTG-TTTAATATGTGGATAACGTACGGTTGGCCCTTGACGTCT-CAGGCTCCGCATCCATGAATTATACCCCCCGCAGGTGGGAAACGCACTGAAGTGGGCA-AGCAACCtttcagccgtggtgggttgaatccacgtgtgtggaacctgcagatatgggggatcAGCCTAggacttgagcagtcatggatttggtat-ccgggggtcctggaactggtccccagcagacagagggTCTGCTGCATGTGTCTATGCATGTGTGTGTACGTAcagacagtccccaacttatgtggtttgacttaag i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 564026 315 + 5243153 --ATGTGCATGTGTGTG-TTTAATATGTAGATAACGTATGCttggcccttcatgtct-caggttccgcatccatggattctaccacccacaggtgagaaaCGCACTGAAGTGTGCACAGCAAGCtttcaaccgtggttggttgaatccacgtgtgtggaacctgcagatatgggggatcAGCCTAggacttgagcagtcatggatttggtatcccgggggtcctggacctggtccctggcagatagagggTCTGCTGCGTGTGTTTATGCATCTGTGTGTACGTAcagacagtccccaacttatgtggtttgacttaag i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1897340 316 - 1938448 ATATGTGCATGTGTGTG-TTTAATATGTCGATAACGTAcagttggcccttcctgtct-caggttccgcatccatggattctaccacccgcaggtGGGTAACGCACTAAAGTGTGCACAGCAACCTTTCAGCCGTGGTTGGTAGAATCTACGTATGTGGAACCTGCAGATATGGGGGATCAGCCTAggacttgagcagtcacggatttggtatcccgggggtcctggaagtggtccccggcagttacagggTCTGCTGCGTGTGTTTATGC-TCTGTGTGTACGTAcagacagtccccaacttatgtggtttgacttaag i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2506718 1255 + 5252280 I e nomLeu3.chr19 3020434 100 + 81552678 I a score=1974277.000000 s hg38.chr2_KI270769v1_alt 23252 254 + 120616 atttttcaactttatgatggtgcaaaagcgctcccctttcggtgggaactgtgctgtgagcacccacgt-gccattctgtttctcactcgcggtgaattcaagaaatgacgtgaaatgtccaacacttta-taaagcaggccttgtgttggctgattttcccaactgcaggctaatgtaagtgttgtgagcatgtttaaggtagg-----ctaggctatgctgtgacattcagtaggttagatggtgcattcacttctttt s panTro5.chr2A 3477722 254 + 111504155 atttttcaactttatgatggtgcaaaagcgctcccctttcggtgggaactgtgctgtgagcacccacgt-gccattctgtttctcactcgcagtgaattcaagaaatgacgtgaaatgtccaacacttta-taaagcaggccttgtgttggctgattttcccaactgcaggctaatgtaagtgttgtgagcatgtttaaggtagg-----ctaggctatgctgtgacattcagtaggttagatgGTGCATTCACttctttt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3347339 254 + 114371477 atttttcaactttatgatggtgcaaaagcgctcccctttcggtgggaactgtgctgtgagcacccacgt-gccattctgtttctcactcgcagtgaattcaagaaatgacgtgaaatgtccaacacttta-taaagcaggccttgtgttggctgattttcccaactgcaggctaatgtaagtgttgtgagcatgtttaaggtagg-----ctaggctatgctgtgacattcagtaggttagatggtgcattcacttctttt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 221039 254 + 637652 atttttcaactttatgatggtgcaaaagcgctcccctttcggtgggaactgtactgtgagcacccacgt-gccgttctgtttctcacccgcagtgaattcaagaaatgacgtgaaatgtccaacacttta-taaagcaggccttgtgttggctgattttcccaactgtaggctaatgtaagtgttgtgagcatgtttaaggtagg-----ctaggctatgctgtgacattcactaggttagatgGTGCATTCACttctttt i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3279457 254 + 108979918 atttttcaactttatgatggtgcaaaagcgctccccattcggtgggaactgtgctatgagcacccacac-gccattctgtttctcactcacagtgaattcaagaaacgacatgaaatgtccaacacttta-taaagcaggctttgtgttggctgattttcccaaccgtaggctaatgtaagtgttgcgagcatgtttaaggtagg-----ctgggctgtgctggaacattcagttagctaggtgGTGCATTCACTCCtttt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4992540 254 - 111193037 atttttcaactttatgatggtgcaaaagcgctccccattcggtgggaactgtgctatgagcacccacac-gccattctgtttctcactcacagtgaattcaagaaacgacatgaaatgtccaacacttta-taaagcaggctttgtgttggctgattttcccaaccgtaggctaatgtaagtgttgcgagcatgtttaaggtagg-----ctgggctgtgctggaacattcagttagctaggtgGTGCATTCACTCCtttt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3387259 247 + 3644372 atttttcaac-ttatgatggtgc-aaagcgct-cccattcggt-ggaactgtgctatgagca-ccacac-gccattc--gttctcactgacagtgaattcaagaaacgacatgaaatgtccaacactttattaaagcaggctttgtgttgctgatttttcccaaccgtaggctaatgtaagtgttgcgagcatgtttaaggtagg-----ctgggctgtgctggaacattcagttagcatggtggtgcattcac-cctttt i macNem1.NW_012011978v1 I 302 C 0 s cerAty1.NW_012000820v1 3340362 254 - 10304083 atttttcaattttatgatggtgcaaaagcgctccccattcggtgggaactgtgctgtgagcacccacac-gccattctgtttctcactcacagtgaattcaagaaacgacatgaaatgtccaacacttta-taaagcaggctttgtgttggctgattttcccaaccgtaggctaatgtaagtgttgcgagcatgtttaaggtagg-----ctgggctgtgctggaacattcagttagctaggtgGTGCATTCACTCCtttt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3424189 254 - 107702431 atttttcaactttatgatggtgcaaaagcgctccccattgggtgggaactgtgctgtgagcacccacac-gccattctgtttctcactcacagtgaagtcaagaaacgacatgaaatgcccaacacttta-taaagcaggctttgtgttggctgattttcccaaccgtaggctaatgtaagtgttgtgagcatgtttaaggtagg-----ctgggctgtgctggaacattcggtaggctaggtggtgcattcactcctttt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 955043 254 + 1565135 atttttcaactttatgatggtgcaaaagcgcttcccattcggtgggaactgtgctgtgagcacccacac-gccattctgtttctcactcacagtgaattcaagaaacgacatgaaatgtccaacacttta-taaagcaggctttgtgttggctgatgttcccaaccgtaggctaatgtaagtgttgcgagcatgtttaaggtagg-----ctgggctgtgctggaacattcagttagctaggtgGTGCATTCACTCCTTTT i manLeu1.NW_012104432v1 C 0 I 5011 s colAng1.NW_012118821v1 3330757 249 - 13651311 atttttcaactttatgatggtgcaaaagcgctccccatttggtgggaactgtgctgtgagcacccacac-gccgttctgtttctcactcacagtgaattcaagaaatgacatgaaatgtccaacacttta-taaagcaggctttgtgttgtctgattttcccaactgtaggctaatgtaagtgttgtgagcatgtttaaggtagg-----ctgggctgtgctgga-----cagttggctaggtggtgcattcactcctttt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3423463 235 - 108792865 gtttttcaactttatgatggggtgaaagcgctcccaattcagtgggaactgtgctgtgagcacccacatggccattctgtttctcagtctcagagaattcaagaaacaacatgaaatgttcagcactttg-taaagtaggccttgtgttttctgatttt----------------------tgttgtgagtgtgtttaaggtaggctaggctaggctgtgctctgacattcagtacgtta---ggtgcattcacttatttt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3078584 257 - 7082604 gtttttcaactttatgatggggtgaaagcgctcccaattcagtgggaactgtgatgtgagcacccacacggccattctgtttctcagtctcagcgaattcaagaagccacatgaagtgttcagcactttg-taaagcaggccttgtgttttctgagtttcccaactgtaagctaatgttagtgttgtgagtgtgtttaaggtaggctaggctaggctgtgccgtgacattcagtaggtta---ggtgcattcacttatttt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 564341 257 + 5243153 gtttttcaactttatgatggggtgaaagcgctcccaattcagtgggaactgtgctgtgagcacccacacggccattctgtttctcagtctcagcgaattcaagaaaccacatgaagtgttcagcgctttg-taaagttggccttgcgttttctgattttcccaactgtaggctaatgttagtgttgtgagcgtgtttaaggtaggctagactaggctgtgccgtgacattcagtaggtta---ggtgcattcacttatttt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1897656 257 - 1938448 gtttttcaactttatgatggagtgaaagcgctcccaattcggtgggaactgtgctgtgagcacccacacggccattctgtttctcagtctcagcgaattcaagaaactacatcaagtgttcagcactttg-taaagtaggccttgtgtgttctgattttcccagctgtaggctaatgttagtgttgtgagtgtgtttaaggtaggctgggctgggctgtgccgtgacattcagtaggtta---ggtgcattcacttatttt i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2506718 1255 + 5252280 I e nomLeu3.chr19 3020434 100 + 81552678 I a score=506446.000000 s hg38.chr2_KI270769v1_alt 23506 88 + 120616 c--ttttctttt------------------------------------------------------------c---------ttttcttttgagacagagtttggctctgtggcccaggctggagtgcagtggtgcgatctccgctcactgcaacctct-- s panTro5.chr2A 3477976 88 + 111504155 c--ttttctttt------------------------------------------------------------c---------tttttttttgagacagagtttagctctgtggcccaggctggagtgcagtggtgcgatatccactcactgcaacctct-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3347593 88 + 114371477 c--ttttctttt------------------------------------------------------------c---------ttttcttttgagacagagtttggctctgtggcccaggctggagtgcagtggtgcgatatccgctcactgcaacctct-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 221293 148 + 637652 c--ttttcttttcttttcttttcttttcttttcttttcttttctttcctttcctttcctttcctttcctttcc---------ttttcttttgagacagagtttggctctgtggcccaggctggagtgcagtggtgagatctccgctcactgcaatctct-- i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3279711 90 + 108979918 cttttttttttt------------------------------------------------------------t---------tttttttccaagatggagtttggctctgtggcccaggctggagtgcagtggtgcgatctccactcactacaacctct-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4992794 87 - 111193037 c---tttttttt------------------------------------------------------------t---------tttttttccgagatggagtttggctctgtggcccaggctggagtgcagtggtgcgatctccactcactacaacctct-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3387506 84 + 3644372 c---tttttttt------------------------------------------------------------t---------tttttttccgagatggag-ttggctc--tggcccaggctggagtgcagtggtgcgatctccactcactacaacctct-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3340616 88 - 10304083 c--ttttttttt------------------------------------------------------------t---------ttttttttcgagatggagtttggctctgtggcccaggctggagtgcagtggtgcgatctccactcactacaacatct-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3424443 82 - 107702431 --------cttt------------------------------------------------------------t---------tttttttttgagatggagtttggctctgtggcccaggctggagtgcagtggtgcgatctccactcactgcagcctct-- i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3331006 82 - 13651311 --------cttt------------------------------------------------------------t---------tttttttccgagatggagtttggctctgtggcccaggctggagtgcagtggtgcgatctccactcactacaacctct-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3423698 91 - 108792865 -ctttttctttt------------------------------------------------------------t---------ttcttttttgagacagagtttcgctctgttgcccaggctagagtgcagtggtgcgatcttaactcactataacctctgt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3078841 91 - 7082604 -ctttgtctttt------------------------------------------------------------c---------tttttttttgagacagagtttcactctgttgcccaggctagagtgcagtggttcgatcttaactcactgtaacctctgt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 564598 100 + 5243153 -ctttttctttt------------------------------------------------------------cttttttttttttttttttgagacagagtttcactctgttgcccaggctagagtgcaatggtgcgatcttaactcactatcacctctgt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1897913 88 - 1938448 -cttt---tttt------------------------------------------------------------c---------tttttttttgagacagagtttcactctgttgcccaggctagagtacagtggtgcgatcttaactcactataacctctgt i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2506718 1255 + 5252280 I e manLeu1.NW_012104432v1 955297 5011 + 1565135 I e nomLeu3.chr19 3020434 100 + 81552678 I a score=1258365.000000 s hg38.chr2_KI270769v1_alt 23594 218 + 120616 c-tcccaggtttaagtgattctcctgcctcagcctcccaagtagctgggattacaggtgctcaccaccacatctggctaagttttgtatttttggtggaactggaatttcaccat-gttggccaggctgctctccaactcctgatcccaggtgatccacccagctcagcctcccacagtgctggggttacagaagtgagccatcgtgcctggccTGCATT s panTro5.chr2A 3478064 218 + 111504155 c-tcccaggtttaagtgattctcctgcctcagcctcccaagtagctgggattacaggtgctcatcaccacacctggctaagttttgtatttttggtggagctgggatttcaccat-gttggccaggctgctctccaactcctgatcccaggtgatccacccagctcagcctcccacagtgctggggttacagaagtgagccatcgtgcctggccTGCATT i panTro5.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 221441 217 + 637652 c-tcccaggtttaagtgattctcctgcctcagcct-ccaagtagctgggattacaggtgctcaccaccacacctggctaagttttgtatttttggtggagctgggatttcaccat-gttggccaggctgctctccaactcctgatcccaggtgatccacccagctcagcctcccacagtgctggggttacagaagtgagccatcgtgcctggcctgcatt i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3279801 203 + 108979918 c-tcccgggtttaagtgattctcctgcctcagcccgccaagtagctgggattacaggtgctcac-accacacctggctaagttttgtatttttggtggagctggggtttcaccat-gttggccaggctgctctccaactcctgacctcaggtgatccacccagctcggcctctcagagtgc--------------taagccaccgtgcccggccTGCATT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4992881 203 - 111193037 c-tcccgggtttaagtgattctcctgcctcagcctgccaagtagctgggattacaggtgctcac-accacacctggctaagttttgtatttttggtggagctggggtttcaccat-gttggccaggctgctctccaactcctgacctcaggtgatccacccagctcggcctctcagagtgc--------------tgagccaccgtgcccggccTGCATT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3387590 199 + 3644372 cttcccgggtttaagtg--ttctctgcctcagcctgcc-agtagctgggattacaggtgctcac--ccacacctggctaagttttgta-ttttggtggagctgggg-ttcaccatggttggccaggctgctctccaactcctgacctcaggtgatccacccagctcggcctctcaaagtgc--------------tgagccaccgtgcctggcctgcatt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3340704 203 - 10304083 c-tcccgggtttaagtgattctcctgcctcagcctgccaagtagctgggattaccggtgctcac-accacacctggctaagttttgtatttttggtggaactggggtttcaccat-gttggccaggctgctctccaactcctgacctcaggtgatccacccagctcggcctctcaaagtgc--------------tgagccactgtgcccggccTGCATT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3424525 203 - 107702431 c-tcctgggtttaagtgattctgctgtctcagcctgccaagtagctgggattacaggtgctcac-accacacctggctaagttttgtatttttggtggagctggggtttcaccat-gttggccaggctgctctccaactcctgacctcaggtgatccacccagctcagcctctcaaagtgc--------------tgagccaccgtgcccggcctgcatt i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3331088 203 - 13651311 c-tccagggtttaagtgattctcctgcctcagcctgccaagtagctgggattacaggtgctcac-accacacctggctaagttttgtatttttggtggagctggggttttaccat-gttggccaggctgctctccaactcttgacctcaggtgatccacccagctcggcctctcaaagtgc--------------tgagccaccgtgcccagcctgcatt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3423789 218 - 108792865 c-tcccaggttcaagtgattctcctgcctcagccttctgagtagctgggattacaggtgctcaccaccacacctggctaagttttgtgtttttggtggagctggggtttcccgat-gttggtcaggccggtctcgaactcctgacctcaggtgatccacctggctcagcctcccaaagtgctgggattacaggtgtgagccgccacacccggcctgcatt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3078932 218 - 7082604 c-tcccaggttcaagtgattctcctgcctcagccgtctgagtaactgggattataggcactcaccaccacacccagctaagttttgtatttttggtggagctgaggtttccccat-gttggtcaggctggtctcgaactcctgacctcaggtgatccaccccactcagcttcccaaagtgctgggattacaggtgtgagccaccacacctggcctgcatt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 564698 218 + 5243153 c-tcccaggttcaagtgattctgctgcctcagccttctgagtagctgggattacaggcgctcaccaccacacccagctaagttttgtatttttggtggagctggggtttccccat-gttggtcaggctggtctcgaactcctgaccttagatgatccaccaggctcggcctcccaaagtgctgggattacaggtgtgagccaccacacccggcctgcatt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1898001 218 - 1938448 c-tcccaggttcaagtgattctcctgcctcagccttctgagtagctgggattacaggcgctcaccaccacacccagctaagttttgtatttttggtggagctggggtttccccat-gttggtcaggctggtctcgaactcctaaactcaggtgatccacccagctcagcctcccaaagtgctgggattacaggtgtgagccaccgcacccggcctgcatt i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2506718 1255 + 5252280 I e manLeu1.NW_012104432v1 955297 5011 + 1565135 I e nomLeu3.chr19 3020434 100 + 81552678 I e panPan2.chr2A 3347681 0 + 114371477 C a score=3555.000000 s hg38.chr2_KI270769v1_alt 23812 11 + 120616 CACttc-----------------------------------------------ttttc s panTro5.chr2A 3478282 11 + 111504155 CACttc-----------------------------------------------ttttt i panTro5.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 221658 11 + 637652 cacttc-----------------------------------------------ttttc i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3280004 50 + 108979918 CACTTA--------TTTACTTTTTACTTAttttcttttctttttcttttttttttttt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993084 36 - 111193037 CACTTA----------------------TTTACTTTTTACTTAttttcttttcttttt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3387789 58 + 3644372 cacttattactttacttaTTTCTTTCtttttctttttttttttttttttttttttttt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3340907 36 - 10304083 CACTTA----------------------TTTACTTTTTACTTATtttcttttcttttt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3424728 36 - 107702431 cactta----------------------cttactttttacttaTTttcttttctttct i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3331291 11 - 13651311 cactta----------------------tttac------------------------- i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 564916 11 + 5243153 cactta-----------------------------------------------ttttc i cebCap1.NW_016107454v1 C 0 I 9 s aotNan1.NW_018507213v1 1898219 11 - 1938448 cgctta-----------------------------------------------ttttc i aotNan1.NW_018507213v1 C 0 I 8 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079150 0 - 7082604 C e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2506718 1255 + 5252280 I e calJac3.chr14 3424007 0 - 108792865 C e manLeu1.NW_012104432v1 955297 5011 + 1565135 I e nomLeu3.chr19 3020434 100 + 81552678 I e panPan2.chr2A 3347681 0 + 114371477 C a score=35516.000000 s hg38.chr2_KI270769v1_alt 23823 14 + 120616 tttttttttttttt s panTro5.chr2A 3478293 14 + 111504155 ttcttttttttttt i panTro5.chr2A C 0 T 4918 s gorGor5.CYUI01015435v1 221669 14 + 637652 tgtttttttttgtt i gorGor5.CYUI01015435v1 C 0 I 32 s rheMac8.chr13 3280054 14 + 108979918 ttttttttttttta i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993120 14 - 111193037 cttttttttttttt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3387847 14 + 3644372 tttttttttttttt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3340943 14 - 10304083 cttttttttttttt i cerAty1.NW_012000820v1 C 0 I 2 s chlSab2.chr14 3424764 14 - 107702431 cttttttttttttt i chlSab2.chr14 C 0 I 3 s colAng1.NW_012118821v1 3331302 11 - 13651311 ---ttttttttttt i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079150 0 - 7082604 C e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2506718 1255 + 5252280 I e cebCap1.NW_016107454v1 564927 9 + 5243153 I e aotNan1.NW_018507213v1 1898230 8 - 1938448 I e calJac3.chr14 3424007 0 - 108792865 C e manLeu1.NW_012104432v1 955297 5011 + 1565135 I e nomLeu3.chr19 3020434 100 + 81552678 I e panPan2.chr2A 3347681 0 + 114371477 C a score=168246.000000 s hg38.chr2_KI270769v1_alt 23837 68 + 120616 gaggcagagtctcgctctgttgccc--aggctggagtacagtggtgcgatctcagctcactgcaagctcc s panTro5.chr2A 108024996 68 - 111504155 gaggcagagtcttgctctgttgccc--aggctggagtacagtggtgcgatctcagctcactgcaagctct i panTro5.chr2A n 4918 C 0 s gorGor5.CYUI01015435v1 221715 68 + 637652 gaggcagagtctcgctctgttgccc--aggctggagtacagtggtgcgatctcagctcactgcaagctcc i gorGor5.CYUI01015435v1 I 32 C 0 s rheMac8.chr13 3280068 67 + 108979918 gagacggagtctca--ctgtcacccc-aggttggagtgcagtggtacaatctcggctcactgcaaactcc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993134 66 - 111193037 gagacggagtctca--ctgtcaccc--aggttggagtgcagtggtacaatctcggctcactgcaaactcc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3387861 67 + 3644372 gagacggagtctca--ctgtcgccccagggttggagtgcagtggtacaatctcggctcactgc-aactcc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3340959 66 - 10304083 gagacggagtctca--ctgttgccc--aggttggagtgcagtggtacaatctcggctcactgcaaactcc i cerAty1.NW_012000820v1 I 2 C 0 s chlSab2.chr14 3424781 66 - 107702431 gagacggagtctca--ctgtcgccc--aggctggagtgcagtggtacagtctcggctcactgcaaactcc i chlSab2.chr14 I 3 C 0 s colAng1.NW_012118821v1 3331313 59 - 13651311 gagacagagtctca--ctgtcgccc--agactggagtgcagtagtgcaatctcagctc-------actcc i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079150 0 - 7082604 C e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2506718 1255 + 5252280 I e cebCap1.NW_016107454v1 564927 9 + 5243153 I e aotNan1.NW_018507213v1 1898230 8 - 1938448 I e calJac3.chr14 3424007 0 - 108792865 C e manLeu1.NW_012104432v1 955297 5011 + 1565135 I e nomLeu3.chr19 3020434 100 + 81552678 I e panPan2.chr2A 3347681 0 + 114371477 C a score=619688.000000 s hg38.chr2_KI270769v1_alt 23905 176 + 120616 accttgcaggttcacaccattctcctgcctcagcctcccaagtagctgggactgcaggcgcccaccaccacgcctggctaattttttgtatttttagtagaggcggggtttcaccgtgttagccaggat--ggtctcgatctcctgacctcatgatccgcccccctcagcctcccaaa s panTro5.chr2A 108025064 176 - 111504155 gccttgcaggttcacaccattctcctgcctcagcctcccaagtagctgggactgtaggcgcccaccaccatgcctggctaatttgttgtatttttagtagaggcggggtttcaccgtgttagccaggat--ggtctcaatctcctgacctcatgatccgcccccctcagcctcccaaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3347681 176 + 114371477 gccttgcaggttcacaccattctcctgcctcagcctcccaagtagctgggactgcaggcgcccaccaccatgcctggctaatttgttgtatttttagtagagacggggtttcaccgtgttagccaggat--ggtctcaatctcctgacctcatgatccgcccccctcagcctcccaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 221783 176 + 637652 gccttgcaagttcacaccattctcctgcctcagcctcccaagtagctgggactgcaggcgcccaccaccacgcctggctaattttttgtatttttagtggaggcggggtttcaccgtgttagccaggat--ggtctcgatctcctgacctcatgatccgcccccctcatcctcccaaa i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3280135 172 + 108979918 acctcctgggttcatgccattctcctg-ctcagactcccgagtagct-ggactacaggtgccg-cc-ctatgcccggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggat--ggtcttgatctcctgaccttgtgatccgcccgcctcggcctcccaaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993200 176 - 111193037 acctcctgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccactatgcccggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggat--ggtcttgatctcctgaccttgtgatctgcccgcctcggcctcccaaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3387928 173 + 3644372 acctcctgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggtgccc-ccactatgcc--gctaattttttgtattttagttagagat-gggtttca-cgtgttatccaggatggggtctcgatctcctgaccttgtgatccgcccgcctcggcctcccaaa i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341025 176 - 10304083 gcctcctgggttcccgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccactatgcccggctaattttttgtatttttagtagagacagggtttcaccgtgttagccaggat--ggtctcgatgtcctgaccttgtgatccgcccgcctcggcctcccaaa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3424847 176 - 107702431 acctcctgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccaccatgcccggctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggat--ggtcttgatctcctgaccttgtgatccgccctcctcggcctcccaaa i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3331372 176 - 13651311 gcctcctgggttcatgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccgccaccacacccggctaattttttgtatttttagtagagacggggtttcaccgtgttaaccaggat--ggtcttgatctcctgaccttgtgatccacctgcctcagcctcccaaa i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079150 0 - 7082604 C e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2506718 1255 + 5252280 I e cebCap1.NW_016107454v1 564927 9 + 5243153 I e aotNan1.NW_018507213v1 1898230 8 - 1938448 I e calJac3.chr14 3424007 0 - 108792865 C e manLeu1.NW_012104432v1 955297 5011 + 1565135 I e nomLeu3.chr19 3020434 100 + 81552678 I a score=189166.000000 s hg38.chr2_KI270769v1_alt 24081 37 + 120616 gtgctgggattacaggcgtgagccaccacgcctggcc s panTro5.chr2A 108025240 37 - 111504155 gtgctgggattacaggcgtgagccaccacgcctggcc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3347857 37 + 114371477 gtgctgggattacaggcgtgagccaccacgcctggcc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 221959 37 + 637652 gtgctgggattacaagcgtgagccaccacgcctggcc i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3280307 37 + 108979918 gtgctgggattacaggcgtgagccaccacgcccagcc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993376 37 - 111193037 gtgctgggattacaggcgtgagccaccacgcccagcc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388101 37 + 3644372 gtgctgggattacaggcgtgagccaccacgcccagcc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341201 37 - 10304083 gtgctgggattacaggcgtgagccaccacgcccagcc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425023 37 - 107702431 gtgctgggattacaggcgtgagccaccacgcccagcc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 960308 37 + 1565135 gtgctgggattacaggcgtgagccaccacgcccagcc i manLeu1.NW_012104432v1 I 5011 C 0 s colAng1.NW_012118821v1 3331548 37 - 13651311 gtgctgggattacaggcgtgagccaccacgcccagcc i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079150 0 - 7082604 C e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2506718 1255 + 5252280 I e cebCap1.NW_016107454v1 564927 9 + 5243153 I e aotNan1.NW_018507213v1 1898230 8 - 1938448 I e calJac3.chr14 3424007 0 - 108792865 C e nomLeu3.chr19 3020434 100 + 81552678 I a score=34219.000000 s hg38.chr2_KI270769v1_alt 24118 5 + 120616 cactt s panTro5.chr2A 108025277 5 - 111504155 CACTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3347894 5 + 114371477 cactt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 221996 5 + 637652 cactt i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3280344 5 + 108979918 CACTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993413 5 - 111193037 CACTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388138 5 + 3644372 cactt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341238 5 - 10304083 CACTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425060 5 - 107702431 CACTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 960345 5 + 1565135 CACTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3331585 5 - 13651311 cactt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3424007 5 - 108792865 cgctt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079150 5 - 7082604 cgctt i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2506718 1255 + 5252280 I e cebCap1.NW_016107454v1 564927 9 + 5243153 I e aotNan1.NW_018507213v1 1898230 8 - 1938448 I e nomLeu3.chr19 3020434 100 + 81552678 I a score=93418.000000 s hg38.chr2_KI270769v1_alt 24123 15 + 120616 actttcatctcaaga s panTro5.chr2A 108025282 15 - 111504155 ATTTTCATCTCAAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3347899 15 + 114371477 attttcatctcaaga i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222001 15 + 637652 attttcATCTCAAGA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3280349 15 + 108979918 ATTTTCAACTCATGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993418 15 - 111193037 attttcaactcatgg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388143 15 + 3644372 attttcaactcatgg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341243 15 - 10304083 ATTTTCAACTCATGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425065 15 - 107702431 ATTTTCAACTCATGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 960350 15 + 1565135 ATTTTCAACTCATGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3331590 15 - 13651311 attttcaactcatgg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3424012 15 - 108792865 attttcaactcacgg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079155 15 - 7082604 attttcaactcacgg i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2507973 15 + 5252280 atttcctacttacaa i otoGar3.GL873658 I 1255 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e cebCap1.NW_016107454v1 564927 9 + 5243153 I e aotNan1.NW_018507213v1 1898230 8 - 1938448 I e nomLeu3.chr19 3020434 100 + 81552678 I a score=120196.000000 s hg38.chr2_KI270769v1_alt 24138 15 + 120616 tatttctaacttact s panTro5.chr2A 108025297 15 - 111504155 TATTTCTAACTTACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3347914 15 + 114371477 tatttctaacttaca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222016 15 + 637652 TATTTCTAACTTACT i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3280364 15 + 108979918 TATTTCTAACTTACG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993433 15 - 111193037 tatttctaacttacg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388158 15 + 3644372 tatttctaacttacg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341258 15 - 10304083 TATTTCTAACTTACG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425080 15 - 107702431 TATTTCTAACTTACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 960365 15 + 1565135 TATTTCTAACTTACG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3331605 15 - 13651311 tatttctaacttacg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3424027 15 - 108792865 tatttctaactcctg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079170 15 - 7082604 catttctaactcaca i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 564936 15 + 5243153 tatttctaactcaca i cebCap1.NW_016107454v1 I 9 C 0 s otoGar3.GL873658 2507988 15 + 5252280 tattttcaacttgcg i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e aotNan1.NW_018507213v1 1898230 8 - 1938448 I e nomLeu3.chr19 3020434 100 + 81552678 I a score=1450516.000000 s hg38.chr2_KI270769v1_alt 24153 175 + 120616 gtgggt------------ATGG------ATGGAGCATCTGTGTCTGTCTTGATGCAC----TGGTAGCCATTTGTTCTGTATGACTGTCCCTCATGCCAAattcatctttgtactcctgttgcctgacttaggacatacctcctcttaggtgcttagtagatgcttcttaagtgagggagtGACTGGGTGCTTCTGT s panTro5.chr2A 108025312 175 - 111504155 GTGGGT------------ATGG------ATGGAGCATCTGTGTCTGTCTTGATGCAC----TGGTAGCCATTTGTTCTGTATGACTGTCCCTCATACCAAattcatctttgtactcctgtagcctgacttaggacatacctcctcttaggtgcttagtagatgcttcttaagtgagggagtGACTGGGTGCTTCTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3347929 175 + 114371477 gtgggt------------ATGG------ATGGAGCATCTGTGTCTGTCTTGATGCAC----TGGTAGCCATTTGTTCTGTATGACTGTCCCTCATACCAAattcatctttgtactcctgtagcctgacttaggacatacctcctcttaggtgcttagtagatgcttcttaagtgagggagtGACTGGGTGCTTCTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222031 175 + 637652 GTGGGT------------ATGG------ATGGAGCATCTGTGTCTGTCTTGATGCAC----TAGTAGCCATTTGTTCTGTATGACTGTCCCTCATACCAAattcatctttgtactcctgttgcctgacttaggacatacctcctcttaggtgcttagtagatgcttcttaagtgagggagtGACTGGGTGCTTCTGT i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3280379 179 + 108979918 ATGGGT------------ATGG------ACGGAGCATCTGTGTCTGTCTTGATGCACTGTTTGGTAGCCATGTGTTCTGTATGACTGTCTGTCATACCGAGTTCATCTTTGTACTCCTGTTGTCTGATGTAGGACGTACTTCCTCTTAGGTGCTTAGTTGATGCTTCTTAAGTGAGGGAGTGACTGGGTGCTTCTGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993448 179 - 111193037 atgggt------------ATGG------ACGGAGCATCTGTGTCTGTCTTGATGCACTGTTTGGTAGCCATGTGTTCTGTATGACTGTCTGTCACACCGAGTTCATCTTTGTACTCCTGTTGTCTGATGTAGGATGTACTTCCTCTTAGGTGCTTAGTTGATGCTTCTTAAGTGAGGGAGTGACTGGGTGCTTCTGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388173 179 + 3644372 atgggt------------ATGG------ACGGAGCATCTGTGTCTGTCTTGATGCACTGTTTGGTAGCCATGTGTTCTGTATGACTGTCTGTCATACCGAGTTCATCTTTGTACTCCTGTTGTCTGATGTAGGACGTACTTCCTCTTAGGTGCTTAGTTGATGCTTCTTAAGTGAGGGAGTGACTGGGTGCTTCTGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341273 179 - 10304083 ATAGGT------------ATGG------ACGGAGCATCTGTGTCTGTCTTGATGCACTGTTTGGTAGCCATATGTTCTGTATGACTGTCTGTCATACCGAGTTCATCTTTGTACTCCTGTTGTCTGATGTAGGACGTACTTCCTCTCAGGTGCTTAGTTGATGCTTCTTAAGTGAGGGAGTGACTGGGTGCTTCTGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425095 179 - 107702431 ATGGGT------------ATGG------ACGGAGCATCTGTGTCTGTCTTGATGCACTGTTTGGTAGCCATATGTTCTGTATGACTGTCTATCATACCGAGTTCATCTTTGTGCTCCTGTTGTCTGATGTAGGACGTACTTCCTCTTAGGTGCTTAGTTGATGCTTCTTAAGTGAGGGAGTGACTGGGTGCTTCTGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 960380 179 + 1565135 ATAGGT------------ATGG------ACGGAGCATCTGTGTCTGTCTTGATGCACTGTTTGGTAGCCATATGTTCTGTATGACTGTCTGTCATACCGAGTTCATCTTTGTACTCCTGTTGTCTGATGTAGGACGTACTTCCTCTCAGGTGCTTAGTTGATGCTTCTTAAGTGAGGGAGTGACTGGGTGCTTCTGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3331620 179 - 13651311 atgggt------------ATGG------ACGGAGCATCTGTGTCTGTCTTGATGCACTGTTTGGTAGCCATCTGTTCTGTATGACTGCCTGCCATACCGAGTTCATCTTTGTACTCCTGTTGTCTGATGTAGGACATACTTCCTCTTAGGTGCTCAGTTGATGCTTCTTAAGTGAGGGAGTGACTGGGTGCTTCTGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3424042 178 - 108792865 gtgggt------------GTGG------ACGGAGCATCTGGGTCTGTCTTGACACACTGCTTTGTAGCCATGTGTTCTGTGTGACTGCCCTTcatgccacattcatctttggactcctgttacctgac-tagagtgtacctcctcatagatgcttaaaaaatgcttcttaagtgaaggagtGACTGGGTGCTTCTGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079185 174 - 7082604 gtgggt------------GTGG------ACGGAGCATCTGTGTCTGTCTTGACGCCCTGCTTTGTAGCCATTTGTTCTGTGTGGCTGCCCTTCATACCACATTTATCTTTGGACTCCCGTTGCCTGAC--ATGGGGTGCCTCCTCATAGATGCTTAGAAAATG---CTTAAGTGAAGGAGCGACTGGGAGCTTCTGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 564951 177 + 5243153 gtgggt------------GTGG------ATGGAGCATCTGCGTCTGTCTTGACATGCTGCTTTGTAGCCGTTTGTTCTGTGTGACTGCCCTTCA-ACCACAttcatctttggactcctgttgcctgac-tagggcatagctcctcgtaggtgcttagaaaatgcttcttaagtgaaggagtGACTGAGTGCTTCTGT i cebCap1.NW_016107454v1 C 0 I 2 s aotNan1.NW_018507213v1 1898238 178 - 1938448 gtgggt------------GTGG------ACGGAGCACCTGTGTCTGTCTTGACATGCTGCTTTGTAGCCATTTGTTCCGTGTGACTGTCCTTCATACCACAttcatctttggactcctgttgcctgac-tagggcgtacctcctcgtaggtgcttagaaaatgcttcttaagtgaaggagtGACTGGGTGCTTCTGT i aotNan1.NW_018507213v1 I 8 C 0 s otoGar3.GL873658 2508003 169 + 5252280 atggatttatcagcacccatggtaggtcagggaatagctgTGTTTATCTCAGTAGGCTCTTGGGCAGTCACACCTGCCATCTGATGGTCCCTCGTACCAAATCCATCTTTGC-CTCCTGCAGCCTGGCCTC--ACACACCCCTTCCTGGGTG-----------------------AAGCGTGA-TGGGCGCCT-TGC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e nomLeu3.chr19 3020434 100 + 81552678 I a score=311683.000000 s hg38.chr2_KI270769v1_alt 24328 72 + 120616 TAATATCAGTATGAACAGAGAGCTAAGCCTGCCCCGCCAGCCCAGCCTGCCTTAAGGGCTGTCTTGT--AACAG s panTro5.chr2A 108025487 72 - 111504155 TAATATCAGTATGAACAGAGAGCTAAGCCTGCCCCGCCAGCCCAGCCTGCCTTAAGGGCTGTCTTGT--AACAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3348104 72 + 114371477 TAATATCAGTATGAACAGAGAGCTAAGCCTGCCCCGCCAGCCCAGCCTGCCTTAAGGGCTGTCTTGT--AACAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222206 72 + 637652 TAATATCAGTATAAACAGAGAGCTAAGCCCGCCCCGCCAGCCCAGCCTGCCTTAAGGGCTGTCTTGT--AACAG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3280558 69 + 108979918 TTA---CAATATGAACAGCAAGCTAAGCCCGCTCCGCCAGCCCAGCCTGCCTTAAGAGCTGTCTTGT--AACAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993627 69 - 111193037 TTA---CAATATGAACAGCAAGCTAAGCCCGCTCCGCCAGCCCAGCCTGCCTTAAGAGCTGTCTTGT--AACAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388352 69 + 3644372 TTA---CAATATGAACAGCAAGCTAAGCCCGCTCCGCCAGCCCAGCCTGCCTTAAGAGCTGTCTTGT--AACAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341452 69 - 10304083 TTA---CAATATGAACAGCAAGCTAAGCCCGCTCCGCCAGCCCAGCCTGCCTTAAGAGCTGTCTTGT--AACAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425274 69 - 107702431 TTA---CAATATGAACAGCAAGCTAAGCCCGCTCCGCCAGCCCAGCCTGCCTTAAGAGCTGTCTTGT--AGCAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 960559 69 + 1565135 TTA---CAATATGAACAGCAAGCTAAGCCCGCTCCGCCAGCCCAGCCTGCCTTAAGAGCTGTCTTGT--AACAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3331799 69 - 13651311 TTA---CAATATGAACAGCAAGCTAAGCCCTCTCCGCCAGCCCAGCCTGCCTTAAGAGCTGTCTTGT--AACAG i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2508172 35 + 5252280 -----CCAGTGTGGACA--CAACTAAG--------------------------------TGGCTTGTAGAACAG i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079359 0 - 7082604 C e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e cebCap1.NW_016107454v1 565128 2 + 5243153 I e aotNan1.NW_018507213v1 1898416 0 - 1938448 C e calJac3.chr14 3424220 0 - 108792865 C e nomLeu3.chr19 3020434 100 + 81552678 I a score=43512.000000 s hg38.chr2_KI270769v1_alt 24400 6 + 120616 CTTCGC s panTro5.chr2A 108025559 6 - 111504155 CTTCGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3348176 6 + 114371477 CTTCGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222278 6 + 637652 CTTCGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020534 6 + 81552678 CTTCGC i nomLeu3.chr19 I 100 C 0 s rheMac8.chr13 3280627 6 + 108979918 CTTCGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993696 6 - 111193037 CTTCGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388421 6 + 3644372 CTTCGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341521 6 - 10304083 CTTTGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425343 6 - 107702431 CTTCGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 960628 6 + 1565135 CTTCGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3331868 6 - 13651311 CTTCGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3424220 2 - 108792865 ----GC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079359 2 - 7082604 ----GC i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1898416 2 - 1938448 ----GC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2508207 6 + 5252280 ACTCGC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e cebCap1.NW_016107454v1 565128 2 + 5243153 I a score=1298777.000000 s hg38.chr2_KI270769v1_alt 24406 146 + 120616 CTCACAGGCATTCGCACCATGA-------------CTTCCA-CA-------GGTAGGTTTCTTTATTCCTTC-CCCGAAACATCAGGGGCATTCTGTGAGCTTTCCTGTGTGTCCGCAGG-GGCAGTTCTGTCCTTGGAAGCTGAGAGCAGAAGCACTGCAGGGCCCCC s panTro5.chr2A 108025565 146 - 111504155 CTCACAGGCATTCGCACCGTGA-------------CTTCCA-CA-------GGTAGGTTTCTTTATTCCTTC-CCCAAAACATCAGGGGCATTCTGTGAGCTTTCCTGTGTGTCCGCAGG-GGCAGTTCTGTCCTTGGAAGCTGAGAGCAGAAGCACTGCAGGGCCCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3348182 146 + 114371477 CTCACAGGCATTCGCACCGTGA-------------CTTCCA-CA-------GGTAGGTTTCTTTATTCCTTC-CGCGAAACATCAGGGGCATTCTGTGAGCTTTCCTGTGTGTCCGCAGG-GGCAGTTCTGTCCTTGGAAGCTGAGAGCAGAAGCACTGCAGGGCCCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222284 146 + 637652 CTCACAGGCATTCGCACCGTGA-------------CTTCCA-CA-------GGTAGGTTTCTTTATTCCTTC-CCCGAAACATCAGGGGCATTCTGTGAGCTTTCCTGTGTGTCCGCAAG-GGCAGTTCTGTCCTTGGAAGCTGAGAGCAGAAGCACTGCAGGGCCCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020540 147 + 81552678 CTCACAGGCATTCACACTGTGA-------------CTTCCATTA-------GGTAGGTTTCTTTATTCCTTC-CCCGAAATGTCAGGGGCATTCTGTGGGCTTTCCTGTGTGTCCGCAGG-GGCAGTTCTGTCCTTGGAAGCTGAGAGCAGAAGCACTGCAGGGCCCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3280633 160 + 108979918 CTCACAGGCATTCACACCGTGAATTCACACTGTGCCTTCCC-CA-------GGTAGGTTTCTTTATTCCTTTACCCGAAACATCAAGGGCATTCTGTGAGCGTTCCTGTGTGTCTGCGGG-GGCAGGTCTGTCCTTGGAAGCTAAGAGCAGAAGCACCGCAGGGCCCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993702 160 - 111193037 CTCACAGGCATTCACACCGTGAATTCACACTGTGCCTTCCC-CA-------GGTAGGTTTCTTTATTCCTTTACCAGAAACATCAAGGGCATTCTGTGAGCGTTCCTGTGTGTCCGCGGG-GGCAGGTCTGTCCTTGGAAGCTAAGAGCAGAAGCACCGCAGGGCCCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388427 160 + 3644372 CTCACAGGCATTCACACCGTGAATTCACACTGTGCCTTCCC-CA-------GGTAGGTTTCTTTATTCCTTTACCGGAAACATCAAGGGCATTCTGTGAGCGTTCCTGTGTGTCTGCGGG-GGCAGGTCTGTCCTTGGAAGCTAAGAGCAGAAGCACCGCAGGGCCCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341527 160 - 10304083 CTCACAGGCATTCACACTGTGAATTCACACTGTGCCTTCCC-CA-------GGTAGGTTTCTTTATTCCTTTACCCGAAACATCAAGGGCATTCTGTGAGCGTTCCTGTGTGTCTGCGGG-GGCAGGTCTGTCCTTGGAAGCTAAGAGCAGAAGCACCGCAGGGCCCTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425349 160 - 107702431 CTCACAGGCATTCACACCATGAATTCACACTGTGCCTTCCC-CA-------GGTAGGTTTCTTTATTCCTTTACCCGAAACATCAAGGGCATTCTGTGAGCTTTCCTGTGTGTCTGCGGG-GGCAGGTCTGTCCTTGGAAGCTAAAAGCAGAAGCACCGCAGGGCCCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 960634 160 + 1565135 CTCACAGGCATTCACACCGTGAATTCACACTGTGCCTTCCC-CA-------GGTAGGTTTCTTTATTCCTTTACCCGAAACATCAAGGGCATTCTGTGAGCTTTCCTGTGTGTCTGCGGG-GGCAGGTCTGTCCTTGGAAGCTAAGAGCAGAAGCACCGCAGCGCCCCC i manLeu1.NW_012104432v1 C 0 I 2 s colAng1.NW_012118821v1 3331874 160 - 13651311 CTCACAGGCATTCACACCGTGAATTCACACTGTGCCTTCCC-CA-------GGTAGGTTTCTTTATTCCCTTACCCGAAACATCAAGGGCATTCTGTGAGCTTTCCTGTGTGTCTGCGGG-GGCAGGTCTGTCCTTGGAAGCTAAGAGCAGAAGCACCGCAGGGCCCCC i colAng1.NW_012118821v1 C 0 I 2 s calJac3.chr14 3424222 145 - 108792865 CTCACAGGCCTTCGCACCGTGA-------------CTGCCA-CA-------GGTAGGTTTCTTTATTCCTGCCCCTGAAACATCAGGGGCAGTCTGCAAGCTTTCC--TGTGTCTGTAGGCAACAGTCCTGTCCTTGGAAGCTGAGAGCACAATGACGGCAGCCCCCC- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079361 145 - 7082604 CTCACAAGCATTCACGCCGCAA-------------CTGCCA-CA-------GGGAGGTTTCTTTATTCCTTTCCCGGAAACCTCAGGGGCATCCTGCAAGCATTCC--TGTGTCCGTAGGCAGCAGTCCTGTTCTTGGAAGCTGAGAGCAGAAGCACAGCAGCCCCCC- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 565130 145 + 5243153 CTCACAGGCATTCGCGCCGTGA-------------CTGCCA-TA-------GGTAGGTTTCTTTATTCCTTTCCCCGAAACATCAGGGGCATTCTGCGAGCGTTCC--TGTGTCCGTAGGCAGCAGTCCTGTCCTTGGAAGCTGAGAGCAGAAGCACAGCAGCCCCCC- i cebCap1.NW_016107454v1 I 2 C 0 s aotNan1.NW_018507213v1 1898418 145 - 1938448 CTCACAGGCATTCGCACCATGA-------------CTGCCA-CA-------GGTAGGTTTCTTCATTCCCTTCCCCAAAACATCAGGGGCATTCTGTGAGCTTTCC--TGTGTCCGTAGGCAGCAGTCCTGTCCTTGGAAGCTGAGAGCAGAAGCACGGCAGCCCCCC- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2508213 105 + 5252280 ---AAAGCCTCTCAGATGATGA-------------CCTCCA-TAACCCCACAGATGGTTTCTTT-TTCATT-------------------ATTCCATGAGCTTTCCTGTGTGTCCTCCAG---------------------------GCAGCAGACTTGCAGCTCACAC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I a score=10927.000000 s hg38.chr2_KI270769v1_alt 24552 2 + 120616 AG s panTro5.chr2A 108025711 2 - 111504155 AG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3348328 2 + 114371477 AG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222430 2 + 637652 AG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020687 2 + 81552678 AG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3280793 2 + 108979918 AG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993862 2 - 111193037 AG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388587 2 + 3644372 AG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341687 1 - 10304083 G- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425509 2 - 107702431 AG i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3424367 2 - 108792865 AG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079506 2 - 7082604 AG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 565275 2 + 5243153 AG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1898563 2 - 1938448 AG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2508318 2 + 5252280 AG i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I a score=28589.000000 s hg38.chr2_KI270769v1_alt 24554 10 + 120616 GCCACTTCCT------- s panTro5.chr2A 108025713 10 - 111504155 GCCACTTCCT------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3348330 10 + 114371477 GCCACTTCCT------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222432 10 + 637652 GCCACTTCCT------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020689 10 + 81552678 GCCACTTCCT------- i nomLeu3.chr19 C 0 C 0 s cerAty1.NW_012000820v1 3341688 10 - 10304083 GCCCCTTCAC------- i cerAty1.NW_012000820v1 C 0 I 1 s chlSab2.chr14 3425511 8 - 107702431 --CCCTTCAC------- i chlSab2.chr14 C 0 I 1 s calJac3.chr14 3424369 10 - 108792865 GCCGCTTCCA------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079508 10 - 7082604 GCCGCTTCCT------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 565277 10 + 5243153 GCCGCTTCCT------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1898565 10 - 1938448 GCCGCTTCCT------- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2508320 10 + 5252280 -------CCCGCGGGGC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C a score=15266.000000 s hg38.chr2_KI270769v1_alt 24564 6 + 120616 AGGCAC s panTro5.chr2A 108025723 6 - 111504155 AGGCAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3348340 6 + 114371477 AGGCAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222442 6 + 637652 AGGCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020699 6 + 81552678 GGGCAC i nomLeu3.chr19 C 0 C 0 s chlSab2.chr14 3425520 6 - 107702431 GTGCCC i chlSab2.chr14 I 1 C 0 s calJac3.chr14 3424379 6 - 108792865 GGTCGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079518 6 - 7082604 GGGCGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 565287 6 + 5243153 GGGCGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1898575 6 - 1938448 GGGCAC i aotNan1.NW_018507213v1 C 0 I 3 s otoGar3.GL873658 2508330 6 + 5252280 AGTCGG i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e cerAty1.NW_012000820v1 3341698 1 - 10304083 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C a score=2169.000000 s hg38.chr2_KI270769v1_alt 24570 1 + 120616 A s panTro5.chr2A 108025729 1 - 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3348346 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222448 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020705 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s chlSab2.chr14 3425526 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3424385 1 - 108792865 A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079524 1 - 7082604 A i saiBol1.JH378218 C 0 I 2 s cebCap1.NW_016107454v1 565293 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2508336 1 + 5252280 A i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e cerAty1.NW_012000820v1 3341698 1 - 10304083 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C a score=2800.000000 s hg38.chr2_KI270769v1_alt 24571 1 + 120616 C s panTro5.chr2A 108025730 1 - 111504155 C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3348347 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222449 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020706 1 + 81552678 C i nomLeu3.chr19 C 0 C 0 s chlSab2.chr14 3425527 1 - 107702431 C i chlSab2.chr14 C 0 C 0 s cebCap1.NW_016107454v1 565294 1 + 5243153 C i cebCap1.NW_016107454v1 C 0 I 1 s otoGar3.GL873658 2508337 1 + 5252280 C i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e cerAty1.NW_012000820v1 3341698 1 - 10304083 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C a score=4041.000000 s hg38.chr2_KI270769v1_alt 24572 5 + 120616 CCCTA- s panTro5.chr2A 108025731 5 - 111504155 CCCTA- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3348348 5 + 114371477 CCCTA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222450 5 + 637652 CCCTA- i gorGor5.CYUI01015435v1 C 0 I 231 s nomLeu3.chr19 3020707 5 + 81552678 CCCCA- i nomLeu3.chr19 C 0 C 0 s chlSab2.chr14 3425528 5 - 107702431 CCCCT- i chlSab2.chr14 C 0 C 0 s otoGar3.GL873658 2508338 5 + 5252280 -CCCAG i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e cerAty1.NW_012000820v1 3341698 1 - 10304083 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C a score=15645.000000 s hg38.chr2_KI270769v1_alt 24577 11 + 120616 CCCCTTCACTG s panTro5.chr2A 108025736 11 - 111504155 CCCCTTCACTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3348353 10 + 114371477 -CCCTTCACTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222686 11 + 637652 CCCCTTCACTG i gorGor5.CYUI01015435v1 I 231 C 0 s nomLeu3.chr19 3020712 11 + 81552678 CCTCTTCACTG i nomLeu3.chr19 C 0 C 0 s chlSab2.chr14 3425533 11 - 107702431 GCCCCTCACTG i chlSab2.chr14 C 0 C 0 s otoGar3.GL873658 2508343 11 + 5252280 ACCCTGCTCTG i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e cerAty1.NW_012000820v1 3341698 1 - 10304083 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C a score=16865.000000 s hg38.chr2_KI270769v1_alt 24588 16 + 120616 TGCCCTCCCCCTACCC s panTro5.chr2A 108025747 16 - 111504155 TGCCCTCCCCCTACCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3348363 16 + 114371477 TGCCCTCCCCCTACCC i panPan2.chr2A C 0 M 1062 s gorGor5.CYUI01015435v1 222697 16 + 637652 TGCCCTCCCCCTGCCC i gorGor5.CYUI01015435v1 C 0 C 0 s chlSab2.chr14 3425544 16 - 107702431 TGCCCTCCCCCTGCCC i chlSab2.chr14 C 0 I 11 s otoGar3.GL873658 2508354 16 + 5252280 CGGCCTGTCCTTCCTC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e cerAty1.NW_012000820v1 3341698 1 - 10304083 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C e nomLeu3.chr19 3020723 0 + 81552678 C a score=25752.000000 s hg38.chr2_KI270769v1_alt 24604 56 + 120616 ----CTTCACTGTGCCCTCCCCctgccccttcac--tgccctccccctgccccttcactgtg s panTro5.chr2A 108025763 56 - 111504155 ----CTTCACTGTGCCCTCCCCCTGCCCCTTCAC--TGCCCTCCCCCTGCCCCTTCACTGTG i panTro5.chr2A C 0 T 19029 s gorGor5.CYUI01015435v1 222713 56 + 637652 ----CTTCACTGTGCCCTCCCCCTGCCCCTTCAC--TGCCCTCCCCCTGCCCCTTCACTGTG i gorGor5.CYUI01015435v1 C 0 C 0 s chlSab2.chr14 3425571 57 - 107702431 ----NNTCACTGTGCCCTCCCCCTGCCCCTTCACTGTGCCCTCCCCCAGCCCC-TCACTGTG i chlSab2.chr14 I 11 C 0 s otoGar3.GL873658 2508370 53 + 5252280 CTTGTCTCTCCGGGGCCTCCTCTCA-CGAGTCAC--CGCTCACCTGCAGCGCT-GCA----- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e cerAty1.NW_012000820v1 3341698 1 - 10304083 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C e nomLeu3.chr19 3020723 0 + 81552678 C e panPan2.chr2A 3348379 1062 + 114371477 M a score=11553.000000 s hg38.chr2_KI270769v1_alt 24660 34 + 120616 ccctccccctgccccttcactgtgccctcccc-tg s gorGor5.CYUI01015435v1 222769 35 + 637652 CCCTCCCCCTGCCCCTTCACTGTGCCCTCCCCCTG i gorGor5.CYUI01015435v1 C 0 C 0 s chlSab2.chr14 3425628 34 - 107702431 CCCTCCCCCTGCCCCTTCACTGTGCCCTCCCC-CA i chlSab2.chr14 C 0 C 0 s otoGar3.GL873658 2508423 27 + 5252280 ---CCCCCAAGCC----CACTGTGCCTTCTCC-TG i otoGar3.GL873658 C 0 I 725 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e cerAty1.NW_012000820v1 3341698 1 - 10304083 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C e nomLeu3.chr19 3020723 0 + 81552678 C e panPan2.chr2A 3348379 1062 + 114371477 M e panTro5.chr2A 108025819 19029 - 111504155 T a score=2742.000000 s hg38.chr2_KI270769v1_alt 24694 11 + 120616 ccccttcactg s gorGor5.CYUI01015435v1 222804 11 + 637652 CCCCTTCACTG i gorGor5.CYUI01015435v1 C 0 C 0 s chlSab2.chr14 3425662 11 - 107702431 GCCCTTCACTG i chlSab2.chr14 C 0 I 44 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2508450 725 + 5252280 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e cerAty1.NW_012000820v1 3341698 1 - 10304083 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C e nomLeu3.chr19 3020723 0 + 81552678 C e panPan2.chr2A 3348379 1062 + 114371477 M e panTro5.chr2A 108025819 19029 - 111504155 T a score=0.000000 s hg38.chr2_KI270769v1_alt 24705 19 + 120616 cAGTGCCCCCAGGCCTCTT e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2508450 725 + 5252280 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e chlSab2.chr14 3425673 44 - 107702431 I e cerAty1.NW_012000820v1 3341698 1 - 10304083 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C e nomLeu3.chr19 3020723 0 + 81552678 C e gorGor5.CYUI01015435v1 222815 0 + 637652 C e panPan2.chr2A 3348379 1062 + 114371477 M e panTro5.chr2A 108025819 19029 - 111504155 T a score=69.000000 s hg38.chr2_KI270769v1_alt 24724 2 + 120616 CC s chlSab2.chr14 3425717 2 - 107702431 CT i chlSab2.chr14 I 44 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2508450 725 + 5252280 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e cerAty1.NW_012000820v1 3341698 1 - 10304083 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C e nomLeu3.chr19 3020723 0 + 81552678 C e gorGor5.CYUI01015435v1 222815 0 + 637652 C e panPan2.chr2A 3348379 1062 + 114371477 M e panTro5.chr2A 108025819 19029 - 111504155 T a score=3417.000000 s hg38.chr2_KI270769v1_alt 24726 13 + 120616 GTG-CCCCCCCCCT s gorGor5.CYUI01015435v1 222815 12 + 637652 -TG-CCCTCCCCCT i gorGor5.CYUI01015435v1 C 0 C 0 s cerAty1.NW_012000820v1 3341699 12 - 10304083 GTG-CCCTCCCCC- i cerAty1.NW_012000820v1 I 1 I 3 s chlSab2.chr14 3425719 13 - 107702431 GTGCCCCTCCCCC- i chlSab2.chr14 C 0 I 2 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2508450 725 + 5252280 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C e nomLeu3.chr19 3020723 0 + 81552678 C e panPan2.chr2A 3348379 1062 + 114371477 M e panTro5.chr2A 108025819 19029 - 111504155 T a score=-31.000000 s hg38.chr2_KI270769v1_alt 24739 1 + 120616 A s gorGor5.CYUI01015435v1 222827 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2508450 725 + 5252280 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e chlSab2.chr14 3425732 2 - 107702431 I e cerAty1.NW_012000820v1 3341711 3 - 10304083 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C e nomLeu3.chr19 3020723 0 + 81552678 C e panPan2.chr2A 3348379 1062 + 114371477 M e panTro5.chr2A 108025819 19029 - 111504155 T a score=300.000000 s hg38.chr2_KI270769v1_alt 24740 1 + 120616 C s panPan2.chr2A 3349467 1 + 114371477 C i panPan2.chr2A M 1062 C 0 s gorGor5.CYUI01015435v1 222828 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2508450 725 + 5252280 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e colAng1.NW_012118821v1 3332034 2 - 13651311 I e manLeu1.NW_012104432v1 960794 2 + 1565135 I e chlSab2.chr14 3425732 2 - 107702431 I e cerAty1.NW_012000820v1 3341711 3 - 10304083 I e macNem1.NW_012011978v1 3388589 0 + 3644372 C e macFas5.chr13 4993864 0 - 111193037 C e rheMac8.chr13 3280795 0 + 108979918 C e nomLeu3.chr19 3020723 0 + 81552678 C e panTro5.chr2A 108025819 19029 - 111504155 T a score=56475.000000 s hg38.chr2_KI270769v1_alt 24741 13 + 120616 CCCTTCACTGTGC s panPan2.chr2A 3349468 13 + 114371477 CCCTTCACTGTGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222829 13 + 637652 CCCTTCACTGTGC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3280795 13 + 108979918 CCCTTCACTGTGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993864 13 - 111193037 CCCTTCACTGTGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388589 13 + 3644372 CCCTTCACTGTGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341714 13 - 10304083 CCCTTCACTGTGC i cerAty1.NW_012000820v1 I 3 C 0 s chlSab2.chr14 3425734 13 - 107702431 CCCTTCACTGTGC i chlSab2.chr14 I 2 C 0 s manLeu1.NW_012104432v1 960796 13 + 1565135 CCCTTCACTGTGC i manLeu1.NW_012104432v1 I 2 C 0 s colAng1.NW_012118821v1 3332036 13 - 13651311 CCCTTCACTGTGC i colAng1.NW_012118821v1 I 2 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2508450 725 + 5252280 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e nomLeu3.chr19 3020723 0 + 81552678 C e panTro5.chr2A 108025819 19029 - 111504155 T a score=14785.000000 s hg38.chr2_KI270769v1_alt 24754 3 + 120616 CCT s panPan2.chr2A 3349481 3 + 114371477 CCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222842 3 + 637652 CCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020723 3 + 81552678 CCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3280808 3 + 108979918 CCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993877 3 - 111193037 CCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388602 3 + 3644372 CCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341727 3 - 10304083 CCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425747 3 - 107702431 CCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 960809 3 + 1565135 CCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3332049 3 - 13651311 CCT i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2508450 725 + 5252280 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e calJac3.chr14 3424386 0 - 108792865 C e panTro5.chr2A 108025819 19029 - 111504155 T a score=5159.000000 s hg38.chr2_KI270769v1_alt 24757 1 + 120616 C s panPan2.chr2A 3349484 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222845 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020726 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3280811 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993880 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388605 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341730 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425750 1 - 107702431 C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 960812 1 + 1565135 C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3332052 1 - 13651311 C i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3424386 1 - 108792865 C i calJac3.chr14 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3079525 2 - 7082604 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2508450 725 + 5252280 I e cebCap1.NW_016107454v1 565295 1 + 5243153 I e aotNan1.NW_018507213v1 1898581 3 - 1938448 I e panTro5.chr2A 108025819 19029 - 111504155 T a score=46067.000000 s hg38.chr2_KI270769v1_alt 24758 7 + 120616 CCCCTGC s panPan2.chr2A 3349485 7 + 114371477 CCCCTGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222846 7 + 637652 CCCCTGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020727 7 + 81552678 CCCCTGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3280812 7 + 108979918 CCCCGGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993881 7 - 111193037 CCCCGGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388606 7 + 3644372 CCCCGGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341731 6 - 10304083 CCCCAG- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425751 6 - 107702431 CCCCTG- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 960813 7 + 1565135 CCCCGGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3332053 7 - 13651311 CCCCTGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3424387 7 - 108792865 TCCCTGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079527 7 - 7082604 CCCCTGC i saiBol1.JH378218 I 2 C 0 s cebCap1.NW_016107454v1 565296 7 + 5243153 CCCCTGC i cebCap1.NW_016107454v1 I 1 C 0 s aotNan1.NW_018507213v1 1898584 7 - 1938448 CCCCTGC i aotNan1.NW_018507213v1 I 3 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2508450 725 + 5252280 I e panTro5.chr2A 108025819 19029 - 111504155 T a score=659965.000000 s hg38.chr2_KI270769v1_alt 24765 71 + 120616 CCCTTCACTGTGCC-CTGCTGGGCAGCCTTCCTG-GGCTGCAGGGCAGATGCTCTGTGGTACCTGCTCCCGCT s panTro5.chr2A 3473389 72 + 111504155 CCCTTCACTGTGCCGCTGCTGGGCAGCCTTCCTGTGGCTGCAGGGCAGATGCTCT-TGGTACCTGCTCCCGCT i panTro5.chr2A T 4918 C 0 s panPan2.chr2A 3349492 71 + 114371477 CCCTTCACTGTGCC-CTGCTGGGCAGCCTTCCTG-GGCTGCAGGGCAGATGCTCTGTGGTACCTGCTCCCGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222853 71 + 637652 CCCTTCACTGTGCC-CTGCTGGGCAGCCTTCCTG-GGCTGCAGGGCAGATGCTCTGTGGTACCTGCTCCCGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020734 71 + 81552678 CCCTTCACTGTGCC-CTCCTGGGCAGGCTTCCTC-GGCTGCAGGGCAGATGCTCTGTGGTACCTGCCTCCGCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3280819 71 + 108979918 CCCTTCACTGTGCC-CTCCCGGGCAGCCTTCCTC-AGCTGCAGGGCAGATGCTCTGTGGTACCTGCTCCCGCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4993888 71 - 111193037 CCCTTCACTGTGCC-CTCCCGGGCAGCCTTCCTC-AGCTGCAGGGCAGATGCTCTGTGGTACCTGCTCCCGCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388613 71 + 3644372 CCCTTCACTGTGCC-CTCCCGGGCAGCCTTCCTC-AGCTGCAGGGCAGATGTTCTGTGGTACCTGCTCCCGCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341737 71 - 10304083 CCCTTCACTGTGCC-CTCCCAGGCAGCCTTCCTC-AGCTGCAGGGCAGATGCTCTGTGGTACCTGCTCCCGCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425757 69 - 107702431 CCCTTCACTGTGCC-CTCCC--CCAGCCTTCCTC-AGCTGCAGGGCAGCTGCTCTGTGGTACCTGCTCCCGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 960820 71 + 1565135 CCCTTCACTGTGCC-CTCCCGGGCAGCCTTCCTC-AGCTGCAGGGCAGATGCTCTGTGGTACCTGCTCCCGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3332060 71 - 13651311 CCCTTCACTGTGCC-CTCCTGGGCAGCCTTCCTC-AGCTGCAGGGCAGATGCTCTGTGGTAGCTGCTCCCGCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3424394 71 - 108792865 CCATTCCCTGTGCC-ATCCTGGGCGGACTGCCTC-GGCTGCAGGGCAAATGCTCTGTGGGACATGCTCCTGTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079534 71 - 7082604 CCATGCCCTGTGCC-CTCCTGGGTGGCCTTCCTC-GGCTGCAGGACAGATGCTCTGTGGAACCTGCTCCTGCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 565303 71 + 5243153 CCGTTCCCTGTGCC-CTCCTGGGCGGCTTTCCTA-GACTACAGGGCAGATGCTCTGTGGAACTTGCTCCCGCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1898591 71 - 1938448 CCATTCCCTGTGCC-CTCCTGGGCGGCCTTCCTC-GGCTGCAGGGCAGATGCTCTGTGGAACCTGCTCCCATT i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 524301 974 + 2232271 I e otoGar3.GL873658 2508450 725 + 5252280 I a score=235539.000000 s hg38.chr2_KI270769v1_alt 24836 29 + 120616 CCTCTC---AGGAAGGCCTTCCTCTCCCTCTC s panTro5.chr2A 3473461 29 + 111504155 CCTCTC---AGGAAGGCCTTCCTCTCCCTCTA i panTro5.chr2A C 0 I 5901 s panPan2.chr2A 3349563 29 + 114371477 CCTCTC---AGGAAGGCCTTCCTCTCCCTCTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222924 29 + 637652 CCTCTC---AGGAAGGCCTTCCTCTCCCTCGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020805 29 + 81552678 CCTCTC---AGGAAGGCCTTCCTCTCCCTCGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3280890 29 + 108979918 CCTCTC---AGGAGGGCCTGCCTTTCTCCCTC i rheMac8.chr13 C 0 I 2 s macFas5.chr13 4993959 29 - 111193037 CCTCTC---AGGAGGGCCTGCCTTTCTCCCTC i macFas5.chr13 C 0 I 2 s macNem1.NW_012011978v1 3388684 29 + 3644372 CCTCTC---AGGAGGGCCTGCCTTTCTCCCTC i macNem1.NW_012011978v1 C 0 I 2 s cerAty1.NW_012000820v1 3341808 29 - 10304083 CCTCTC---GGGAGGGCCTGCCTTTCTCCCTC i cerAty1.NW_012000820v1 C 0 I 2 s chlSab2.chr14 3425826 29 - 107702431 CCTCTC---GGGAGGGCCTGCCTTTCTCCCTC i chlSab2.chr14 C 0 I 2 s manLeu1.NW_012104432v1 960891 29 + 1565135 CCTCTC---GGGAGGGCCTGCCTTTCTCCCTC i manLeu1.NW_012104432v1 C 0 I 2 s colAng1.NW_012118821v1 3332131 29 - 13651311 CCTCTC---GGGAGGGCCTGCCTTTCTCCCTC i colAng1.NW_012118821v1 C 0 I 2 s calJac3.chr14 3424465 29 - 108792865 CCTCTC---CATACAGCCTTCCTCCTTACCTC i calJac3.chr14 C 0 I 2 s saiBol1.JH378218 3079605 29 - 7082604 CCTCTG---CAGAGAGCCTCCCTCAATCCCTC i saiBol1.JH378218 C 0 I 2 s cebCap1.NW_016107454v1 565374 29 + 5243153 CCTCTC---CGGAGAGCCTTCCTCCCTCCCTC i cebCap1.NW_016107454v1 C 0 I 2 s aotNan1.NW_018507213v1 1898662 29 - 1938448 CTTCTC---CGGAGAGCCTTCCTCCCTCCCTC i aotNan1.NW_018507213v1 C 0 I 2 s dasNov3.JH580157 525275 28 + 2232271 CCTCTCAGTAGGAGACACTGTCTCTCAC---- i dasNov3.JH580157 I 974 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e otoGar3.GL873658 2508450 725 + 5252280 I a score=1055779.000000 s hg38.chr2_KI270769v1_alt 24865 126 + 120616 TGGGTCACCTCTCCCTGGCACATG--CTTCTCCCAAACCTGCATCTCCAGTG---TCTTCTCTCCTCAGCTACAACCTGCCATCTGCAGGTTTACCAGGCACTTTTCACGTGACTGTTCCACCATCTT--GTC s panTro5.chr2A 3479391 126 + 111504155 TGGGTCACCTCTCCCTGGCACATG--CTTCTCCCAAACCTGCATCTCCAGTG---TCTTCTCTCCTCAGCTACAACCTGCCATCTGCAGGTTTACCAGGCACTTTTCATGTGACTGTTCCACCATCTT--GTC i panTro5.chr2A I 5901 C 0 s panPan2.chr2A 3349592 126 + 114371477 TGGGTCACCTCTCCCTGGCACATG--CTTCTCCCAAACCTGCATCTCCAGTG---TCTTCTCTCCTCAGCTACAACCTGCCATCTGCAGGTTTACCAGGCACTTTTCACGTGACTGTTCCACCATCTT--GTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 222953 126 + 637652 TGGGTCACCTCTCCCTGGCACATG--CTTCTCCCAAACCTGCATCTCCAGTG---TCTTCTCTCCTCAGCTACAACCTGCCATCTGCAGGTTTACCAGGCACTTTTCACGTGACTGTTCCACCATCTT--GTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020834 126 + 81552678 TGGGTCACCTCTCCCTGGCATATG--CTTCTCCCAAGCCTGCATCTCCAGTG---TCTTCTCTCCTCAGCTACAACCTGCCATCTGCAGGTTTACCAGGCGCTTTTCATGTGACTGTTCCACCATCTT--GTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3280921 116 + 108979918 TGGGTCACCTCTCCCCGGCACATG--CTTCTCCCAAA---------CCGGTG---TCTTCTCTCCTCAGCTGCAACCTGCCATCTGCACGTTTACCAGGCACTTTGC-CGTTTCTGTTCCACCATCTT--GTC i rheMac8.chr13 I 2 C 0 s macFas5.chr13 4993990 116 - 111193037 TGGGTCACCTCTCCCCGGCACATG--CTTCTCCCAAA---------CCGGTG---TCTTCTCTCCTCAGCTGCAACCTGCCATCTGCACGTTTACCAGGCACTTTGC-CGTTTCTGTTCCACCATCTT--GTC i macFas5.chr13 I 2 C 0 s macNem1.NW_012011978v1 3388715 116 + 3644372 TGGGTCACCTCTCCCCGGCACATG--CTTCTCCCAAA---------CCGGTG---TCTTCTATCCTCAGCTGCAACCTGCCATCTGCACGTTTACCAGGCACTTTGC-CGTTTCTGTTCCACCATCTT--GTC i macNem1.NW_012011978v1 I 2 C 0 s cerAty1.NW_012000820v1 3341839 116 - 10304083 TGGGTCACCTCTCCCCGGCACATG--CTTCTCCCAAA---------CCGGTG---TCTTCTCTCCTCAGCTGCAACCTGCCATCTGCACGTTTACCAGGCACTTTGC-CGTTTCTGTTCCACCATCTT--GTC i cerAty1.NW_012000820v1 I 2 C 0 s chlSab2.chr14 3425857 116 - 107702431 TGGGTCACCTCTCCCCTGCACATG--CTTCTCCCAAA---------CCCGTG---TCTTCTTTCCTCAGCTGCAACCTGCCATCTGCACGTTTACCAGGCACTTTCC-TGTTTCTGTTCCACCATCTT--GTC i chlSab2.chr14 I 2 C 0 s manLeu1.NW_012104432v1 960922 116 + 1565135 TGGGTCACCTCTCCCCGGCACATG--CTTCTCCCAAA---------CCGGTG---TCTTCTCTTCTCAGCTGCAACCTGCCATCTGCACGTTTACCAGGCACTTTGC-CGTTTCTGTTCCACCATCTT--GTC i manLeu1.NW_012104432v1 I 2 C 0 s colAng1.NW_012118821v1 3332162 116 - 13651311 TGGGTCACCTCTCCCCGGCACGTG--CTTCTCCCAAA---------CCGGTG---TCTTCTCTCCTCAGCTGTAACCTGCCATCTGCACGTTTACCAGGCACTTTCC-CGTTTCTGTTCCACCATCTT--GTC i colAng1.NW_012118821v1 I 2 C 0 s calJac3.chr14 3424496 127 - 108792865 TGGGCCTCCTCTCCCCGGAACATG--CTTCCCCCAAACCCACATCTCCAGGG---TCTTCTGTCCTTAGCTGCAACCTGCCATCTGCACGTTTACCATGCAATTTCA-CATGACTGCTCCACCATCTTAAGTC i calJac3.chr14 I 2 C 0 s saiBol1.JH378218 3079636 127 - 7082604 TGGGCCTCCTCTCCCTGGCACATG--CTTCCCCCAAACCCACATCTCCAGTG---TCTTCTGTCCTCAGCTGCAGCCTGCCAACTACACGTTTACCATACACTTTCA-CGTGACTGCTCCACCATCTTATGTC i saiBol1.JH378218 I 2 C 0 s cebCap1.NW_016107454v1 565405 125 + 5243153 TGGGCCTCCACTCCC-GGCACGTG--C-TCCCCCAAACCCACATCTCCAGTG---TCTTCTGTCCTCAGCTGCAGCCTGCCATCTGCACATTTACCAGGCACTTTCA-CATAACTGCTCCACCATCTTATGTC i cebCap1.NW_016107454v1 I 2 C 0 s aotNan1.NW_018507213v1 1898693 127 - 1938448 TGGGCCTCCTCTCCCTGGCACATG--CTTCCCCCAATCCCACATCTCCAGTG---TCTTCTGTCCTCAACTGCAACCTGCCATCTGCACGTTTACCAGGCACTTTCA-CATGACTGCTCCACCATCTTATGTC i aotNan1.NW_018507213v1 I 2 C 0 s dasNov3.JH580157 525303 98 + 2232271 TGGATTAGCTCTTACCTGTATATATTCTATTCTCAAATCCCCTTCTCTGGTGTTATCCTTTATCCTAGGCT-CAGTCTTTCAT-TGCA--------------------CATGTTTGCTTC------------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e otoGar3.GL873658 2508450 725 + 5252280 I a score=1484727.000000 s hg38.chr2_KI270769v1_alt 24991 162 + 120616 ATTTTT----TATATCTTCTGTCATTTTGTAAAACCCAGCTCATCTGCCT----GCTGCGTCTCCATGTCC----------GGCCTGCCCTGGGTGGGTAGAGACAGGTTCGCGCTGTCCCTCAGATTTCCACGTTAGTGTTTTATTGGT-TAGTTT--GTTTCTGGG-TC-----TCTCTCACCCTCT s panTro5.chr2A 3479517 162 + 111504155 ATTTTT----TATATCTTCTGTCATTTTGTAAAACCCAGCTCATCTGCCT----GCTGCGTCTCCATGTCC----------GGCCTGCCCTGGGTGGGTAGAGACAGGTTCGCGCCGTCCCTCAGATTTCCACGTTAGTGTTTTATTGGT-TAGTTT--GTTTCTGGG-TC-----TCTCTCACCCTCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3349718 162 + 114371477 ATTTTT----TATATCTTCTGTCATTTTGTAAAACCCAGCTCATCTGCCT----GCTGCGTCTCCATGTCC----------GGCCTGCCCTGGGTGGGTAGAGACAGGTTCGTGCCGTCCCTCAGATTTCCACGTTAGTGTTTTATTGGT-TAGTTT--GTTTCTGGG-TC-----TCTCTCACCCTCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 223079 162 + 637652 ATTTTT----TATATCTTCTGTCCTTTTGTAAAACCCAGCTCATCTGCCT----GCTGTGTCTCCATGTCC----------GGCCTGCCCTGGGTGGGTAGAGACAGGTTCGCGCCGTCCCTCAGATTTCCACGTTAGTGTTTTATTGGT-TAGTTT--GTTTCTGGG-TC-----TCTCTCACCCTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3020960 162 + 81552678 ATTTTT----TGTATCTTCTGTCATTTTGTAAAACCCAGCTCATCTGCCT----GCTGCGTCTCCATGTCC----------GGCCTGCCCTGGGTGGGTAGAGACAGGTTCGCGCCATCCCTCAGATTTCCACATTAGTGTTTTATTGGT-TAGTTT--GTTTCTGGG-TC-----TCTCTCACCCTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3281037 162 + 108979918 ATTTTT----TGTATCTTCTGTCATTTTGTAAAACCCAGCTCATCTGCCT----GCTGCATCTCCACGTCC----------GGCCTGCCCTGAGTGGCTAGAGACAGGTTTGCGCCATCCCTTGGATTTCCGCGTTAGTCTGTTATTGGT-TAGTTT--GTTTCCGGG-TC-----TCTCTCACCCTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4994106 162 - 111193037 ATTTTT----TGTATCTTCTGTCATTTTGTAAAACCCAGCTCATCTGCCT----GCTGCATCTCCACGTCC----------GGCCTGCCCTGAGTGGCTAGAGACAGGTTTGCGCCATCCCTTGGATTTCCGCGTTAGTCTGTTATTGGT-TAGTTT--GTTTCCGGG-TC-----TCTCTCACCCTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388831 162 + 3644372 GTTTTT----TGTATCTTCTGTCATTTTGTAACACCCAGCTCATCTGCCT----TTTGCATCTCCACGTCC----------GGCCTGCCCTGAGTGGCTAGAGACAGGTTCGCGCCATCCCTTGGATTTCCGCGTTAGTCTGTTATTGGT-TAGTTT--GTTTCCGGG-TC-----TCTCTCACCCTCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3341955 162 - 10304083 ATTTTT----TGTATCTTCTGTCATTTTGTAAAACCCAGCTCATCTGCCT----GCGGCATCTCCACGTCC----------GGCCTGCCCCGAGTGGGTAGAGACAGGTTCGCGCCATCCCTTGGATTTCTGCGTTAGTCTGTTATTGGT-TAGTTT--GTTTCCGGG-TC-----TCTCTCACCCTCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3425973 162 - 107702431 ATTTTT----TGTATCTTCTGTCATTTTGTAAAACCCAGCTCATCTGCCT----GCTGCATCTCCACGTCC----------GGCCTGCCCTGAGTGGGTAGAGACAGGTTCACGCCATCCCTTGGATTTCCGCGTTAGTCTGTTATTGGT-TAGTTT--GTTTCCGGG-TC-----TCTCTCACCCTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 961038 162 + 1565135 ATTTTT----TGTATCTTCTGTCATTTTGTAAAACCCAGCTCATCTGCCT----GCGGCATCTCCACGTCC----------GGCCTGCCCCGAGTGGGTAGAGACAGGTTCGCGCCATCCCTTGGATTTCCGCGTTAGTCTGTTATTGGT-TAGTTT--GTTTTCGGG-TC-----TCTCTCACCCTCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3332278 162 - 13651311 ATTTTT----TGTATCTTCTGTCATTTTGTAAAACCCAGCTCATCTGCCT----GCTGCATCTCCACGTCC----------GGCCTGCCCTGAGTGGGTAGAGACAGGTTCGCGCCATCCCTTGGATTTCCGCGTTAGTCTGCTATCGGT-TAGTTT--GTTTCCGGG-TC-----TCTCTCACCCTCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3424623 166 - 108792865 ATCGGCTTTATTTATCTTCTGTAATTTTGTGAAGCCCAGCTCATCTGCCT----GCTGCATCTCCATGTCC-----------GCCTGCCTATGATGGGTATAAACATGTTTGCACCAT-CCTTAGCTTTCAATATTGGTGTTTCATTGCTATAGTTT--GTGTCTGGGATC-----TCTCTCACCCTCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079763 156 - 7082604 ATTGTTTTTTTTTATCTTCCGTA--------AAGCCCAGCTCATCTGCCT----GCTGCATCTCCGTGTCC-----------GCCTGCCCAGGGTGGGTAGAGACATGTTCGCACCAT-CCTCAGATTTCAGCATTGGTGTTTCATTGGT-TAGTTT--GTGTCTGGG-TC-----TCCCTCTCCCTCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 565530 161 + 5243153 ATTGTTTTT-TTTATCTTCCGTAATTTTATAAAGCCCAGCTCATCTGCCT----GCTGCATCTCCATGTCC-----------GCCTGCCCAGGGTGGGTAGAGACATGTTCGCACCAC-CCTCAGATGTCAGCATTGGTGTTTCACTGGT-TAGTTT--GTGTCTGGG--------TCTCTCAGCCTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1898820 162 - 1938448 ATTGTTTT--TTTATCTTCTGTAATTTTGTAAAGCCCAGCTCATCTGCCT----GCTGCATCTCCATGTCC-----------GCCTGCCCAGGGTGGGTAGAGACATGTTCGCCCCAT-CCTCAGATTTCAAAGTTGGCGTTTCATTGGT-TAGTTT--GTGTCTGGG-TC-----TCTCTCACCCTCT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2509175 147 + 5252280 ATTTCC----ATCATCTTCTGTAACCTTTTAAAATC-----------------------ATCACCA-ACGC----------AGCCCATCCTGCCTGGGCAGTGGCACAGCCGCCCTCCCACTCAGATTCCGACTCCAGTGTGTTGCTGGT-GAGGTG--GCTTCTCTG-TCTTGCATCCCCCTGCCCCC i otoGar3.GL873658 I 725 C 0 s dasNov3.JH580157 525401 156 + 2232271 --TATT----TGAAT-----GTAATTTTGTAAAACCCAACTCTTCTTCCTCCTGCCTGCATCACCATATCCTTCCCCATACGTCTTAACATTGGTGG-----------TTCACCCAAGCACCCAGACTTTAATTTTAG----TTATTGTT-TGTTTTCAATTTCTCCA-TC-----TCTCTCCTCCTCC i dasNov3.JH580157 C 0 I 41 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I a score=18160.000000 s hg38.chr2_KI270769v1_alt 25153 4 + 120616 AGGG------- s panTro5.chr2A 3479679 4 + 111504155 AGGG------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3349880 4 + 114371477 AGGG------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 223241 4 + 637652 AGGG------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3021122 4 + 81552678 AGGG------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3281199 4 + 108979918 AGGG------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4994268 4 - 111193037 AGGG------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388993 4 + 3644372 AGGG------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3342117 4 - 10304083 AGGG------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3426135 4 - 107702431 AGGG------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 961200 4 + 1565135 AGGG------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3332440 2 - 13651311 AG--------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3424789 4 - 108792865 AAGG------- i calJac3.chr14 C 0 I 892 s saiBol1.JH378218 3079919 4 - 7082604 ACAG------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 565691 4 + 5243153 AAGG------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1898982 4 - 1938448 AAGG------- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2509322 11 + 5252280 AACGTCTGACT i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 525557 41 + 2232271 I a score=156332.000000 s hg38.chr2_KI270769v1_alt 25157 29 + 120616 AGCAGCCACGGCTCCCCCCACC--------GCCCCCG- s panTro5.chr2A 3479683 29 + 111504155 AGCAGCCACGGCTCCCCCCACC--------GCCCCCG- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3349884 29 + 114371477 AGCAGCCACGGCTCCCCCCACC--------GCCCCCG- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 223245 29 + 637652 AGCAGCCACGGCGCCCCCCACC--------GCCCCTG- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3021126 29 + 81552678 AGCAGCCACGGCACCCCCCACC--------GCCCCTG- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3281203 37 + 108979918 AGCAGCCACCGCACCGCCTACCCCCGCCTGGACCCCG- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4994272 37 - 111193037 AGCAGCCGCGGCACCGCCTACCCCCGCCTGGACCCCG- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3388997 37 + 3644372 AGCAGCCACGGCACCGCCTACCCCCGCCTGGACCCCG- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3342121 37 - 10304083 AGCAGCCACGGCACCGCCTACCCCCGCCCGGACCCCA- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3426139 37 - 107702431 AGCAGCCACGGCACCGCCTACCTCCGCCCGGCCCCTG- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 961204 37 + 1565135 AGCAGCCACGGCACCGCCCACCCCCGCCCGGACCCCG- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3332442 27 - 13651311 ----------GTACCCCCTACCCCCGCCCAGCCCCCG- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3425685 25 - 108792865 AGCAGCCCCGGTGCCCTCCCCT------------CTG- i calJac3.chr14 I 892 C 0 s saiBol1.JH378218 3079923 25 - 7082604 AGCAGCCCCGGCGCCCTCCCTT------------CTG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 565695 25 + 5243153 AGCAGCCCCGGCGCCCTCTCCT------------CTG- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1898986 25 - 1938448 AGCAGCCCCAGCGCCCTCCCCT------------CTG- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2509333 31 + 5252280 GGTGGCCCCATCACACCAACCC-------TGTCCTTGC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 525557 41 + 2232271 I a score=2726204.000000 s hg38.chr2_KI270769v1_alt 25186 283 + 120616 CTGCCTGCTGCTCTCCTCCT--------------------GCCGGGCCAGGTGATGCAGCA--TCTGACCACGTGCGGTCTTTAGACTGCCCTA-----GTC-GGTCTGTACGCTGCAGCTGGATTCATTTTCCAAACATTTTATTTCAAAATACATTTCTCTGTTTAGAAGCACCCAGTTGCCC-CTCTTGCCT-GGAACTGAAATCTCACCATTGTGACCTGATGTTGGAAACTTGCCCTGGCTTCTgggacctggc-cctcttcgtcggccttgtgtccccccgagcctagcacag----tgcctggttcacagc s panTro5.chr2A 3479712 283 + 111504155 CTGCCTGCTGCTCTCCTCCT--------------------GCCGGGCCAGGTGATGCAGCG--TCTGACCACGTACGGTCTTTAGACTGCCCTA-----GTC-GGTCTGTACACTGCAGCTGGATTCATTTTCCAAACATTTTATTTCAAAATACATTTCTCTGTTTAGAAGCACCCAGTTGCCC-CTCTTGCCT-GGAACTGAAATCTCACCATTGTGACCTGATATTGGAAACTTGCCCTGGCTTCTgggacctggc-cctcttcatcggccttgtgtcccccggagcctagcacag----tgcctggttcacagc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3349913 283 + 114371477 CTGCCTGCTGCTCTCCTCCT--------------------GCCGGGCCAGGTGATGCAGCG--TCTGACCACGTACGGTCTTTAGACTGCCCTA-----GTC-GGTCTGTACACTGCAGCTGGATTCATTTTCCAAACATTTTATTTCAAAATACATTTCTCTGTTTAGAAGCACCCAGTTGCCC-CTCTTGCCT-GGAACTGAAATCTCACCATTGTGACCTGATATTGGAAACTTGCCCTGGCTTCTgggacctggc-cctcttcatcggccttgtgtcccccggagcctagcacag----tgcctggttcacagc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 223274 283 + 637652 CTGCCTGCTGCTCTCCTCCT--------------------GCCGGGCCGGGTGATGCAGCG--TCTGACCACGTATGGTCTTTAGACTGCCCTA-----GTC-GGTCTGTACACTGCAGCTGGATTCATTTTCCAAACATTTTATTTCAAAATACATTTCTCTGTTTAGAAGCACCCAGTTGTCC-CTCTTGCCT-GGAACTGAAATCTCACCATTGTGACCTGATGTTGGAAACTTGCCCTGGCTTCTgggacctggc-cctcttcatcggccttgtgtccccccgaacctagcacag----tgcctggttcacagc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3021155 281 + 81552678 CTGCCTGCTGCTCTCCTCCT--------------------GCCGGGCCGGGTGATGCAGCA--CCTGACCACGTACGGTCTTTAGACTGCCCTA-----GTC-GGTCTGTACACTGCAGCTGGATTCATTTTCCAAACATTTTATTTCAAAATGCATT--TCTGTTTAGAAGCACCCAGTTGCCC-CTCTTGCCT-GGAACTGAAATCTCACCATTGTGACCTGATGTTGGAAACTTGCCCTGGCTTCTgggacctggc-cctcttcatcggccttgtgtccgcccgagcctagcacag----tgcctggtccacagc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3281240 280 + 108979918 CTGCTCGCTGCTCTCTTCCT--------------------GCCTTGCCGGCTGATGCA--G--CCTGACCATGTACGGTCTTTAGACtgcccca-----gtc-agtctgtaccctgcagctagagtcattttccaaacattttatttcaaaatgcatttctctgtttagaagcacccagttgccc-ctcTTGCCT-GGAACTGAAATCTCACCTTTGTGACCTGATGTTGGAAACTTGCCCTGGCTTCTgggacctgac-cctcttcatcggccttgtgtgcccc-gagcctagcacag----tacctggcccacagc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4994309 280 - 111193037 CTGCTCGCTGCTCTCTTCCT--------------------GCCTTGCCGGCTGATGCA--G--CCTGACCATGTACGGTCTTTAGACTGCCCCA-----GTC-AGTCTGTACCCTGCAGCTAGAGTCATTTTCCAAACATTTTATTTCAAAATGCATTTCTCTGTTTAGAAGCACCCAGTTGCCC-CTCTTGCCT-GGAACTGAAATCTCACCTTTGTGACCTGATGTTGGAAACTTGCCCTGGCTTCTgggacctgac-cctcttcatcggccttgtgtgcccc-gagcctagcacag----tgcctggcccacagc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3389034 282 + 3644372 CTGCTCGCTGCTCTCTTCCT--------------------GCCTTGCCGGCTGATGCAGCG--CCTGACCGTGTGCGGTCTTTAGACTGcccca-----gtc-agtctgtacactgcagctagagtcattttccaaacattttatttcaaaatgcatttctctgtttagaagcacccagttgccc-ctcTTGCCT-GGAACTGAAATCTCACCTTTGTGACCTGATGTTGGAAACTTGCCCTGGCTTCTgggacctgac-cctcttcgtcggccttgtgtgcccc-gagcctagcacag----tgcctggcccacagc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3342158 282 - 10304083 CTGCTCGCTGCTCTCTTCCT--------------------GCCTTGCCGGCTGATGCAGCA--CCTGACCATGTACGGTCTTTAGACtgcccca-----gtc-agtctgtacactgcagctagagtcattttccaaacattttatttcaaaatgcatttctctgtttagaagcacccagttgccc-ctcTTGCCT-GGAACTGAAATCTCACCTTTGCGACGTGATGTTGGAAACTTGCCCTGGCTTCTgggacctggc-cctcttcatcagccttgtgttcccc-cagcctagcacag----tgcctggtccacagc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3426176 282 - 107702431 CTGCTCGCTGCTCTCTTCCT--------------------GCCTTGCTGGCTGGTGCAGCG--CCTGACAATGTACGGTCTTTAGACTGCCCCA-----GTC-AGTCTGTACACTGCAGCTAGAGTCATTTTCCAAACATTTTATTTCAAAATGCATTTCTCTGTTTAGAAGCACCCAGTTGCCC-CTCTTGCCT-GGAACTGAAATCTCATCTTTGTGACCTGATGTTGGAAACTTGCCCTGGCTTCTgggacctggc-cctcttcatcagccttgtgtgcccc-gagcctagcacag----tgcctggcccacagc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 961241 282 + 1565135 CTGCTCGCTGCTCTCTTCCT--------------------GCCTTGCCGGCTGATGCAGCG--CCTGACCATGTACGGACTTTAGACTGCCCCA-----GTC-AGTGTGTacactgcagctggagtcattttccaaacattttatttcaaaatgcatttctctgtttagaagcacccagttgccc-ctcTTGCCT-GGAACTGAAATCTCACCTTTGTGACCTGATGTTGGAAACTTGCCCTGGCTTCTgggacctggc-cctcttcatcagccttgtgtgcccc-gagcctagcacag----tgcctggcccacagc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3332469 282 - 13651311 CTGCTCACTGCTCTCTTCCT--------------------GCCTTGCCGGGTGATGCAGCG--CCTGACCGTGTACGGTCTTTAGACtgcccca-----gtc-agtctgtacactgcagctggattcattttccaaacattttatttcaaaatgcatttctctgtttagaagcacccagttgcct-ctcTTGCCT-GGAACTGAAATCTCACCTCTGTGACCTGATGTTGGAAACTTGCCCTGGCTTCTgggacctagc-cctcttcatcggccttgtgtgcccc-gagcctagcacag----tgcctggcccacagc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3425710 278 - 108792865 CAGCGTT-TGCTCT---CCT--------------------GCCGGGCCAGGCAACGTAGCA--CCTGCCCACTTACGGTCTTTAGACTGCCCCA-----GTCGGGTCTGTACACTGCAGCTAGATTCATTTTCCAAACATTTTATTTAAAAATGCATT--TCTGTTTAGAAGCACCCAGCTGCCCCCTCTTGCCTGGGAACTGGCATCTCACCTTTGTGACCTGATGTTGGAAGCCTGCCCTGGCTTCTgggacccgg--actcttcattggccttgtgtccccc-gagcctagcacag----tgcctggcccacagc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3079948 279 - 7082604 CCGCCTTCTGCTCT---CCT--------------------GCCGGGCCAGGCGATGCAGCAGGCCTGACCACTTTTGGTCTTTAGACTGCCCCA-----GTC-GGTCTGTACACTGCAGCTAGATTCCTTTTCCAAACATTTTATTTCAAAATGCATT--TCTGTGTAGAAGCACCCAGCTGCCCGCTCTTGCCT-GGAACCAGCATCTCACCTCTGCGACCTGATGTCGGAAGCTCGCCCTGGCTTCTgggacccgg--gctcttcgctggccttgtgcccccc-gagcctggcacag----tgcctggcccacagc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 565720 276 + 5243153 CCGCCCTCTGCTCT---CCT--------------------GCCGGGCC-GGCGATGCAGCG--CCTGACCGGTTATGGTCTTTAGACTGCCCCA-----GTC-GGTCTGTACACTGCAGCTAGATTCATTTTCCAAACATTTTATTTCAAAATGCATT--TCTGTTTAGAAGCACCCAGCTGCCCCCTCTTGCCT-GGAACTGGCATCTCACCTTTGTGACCTGATGTCGGAAGCTTGCCCTGGCTTCTGGGACCTGA--ACTCttcactggccttgtgtcccct-gagcctagcacag----tgcctggcccacagc i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1899011 268 - 1938448 CCGCCTTCTGCTCT----CT--------------------GCCAGGCCGGGCGTTGCAGCG--CCTGACCACTTATGCTCTTTAGACTGCCCCA-----GTC-GGTCTGTACACCGCAG------TCATTTTCCAAACATTTTATTTCAAAATGCATT----TGTTTAGGAGCACCCAGCTGCCCCCTCCTGCGT-GGAACTGGCATCTCACCTTTGTGACCTGATGTCCGAAGCTTGCCCTGGCTTCTgggacctgg--actcttcattggccttgtgtccccc-gagcctagcacag----tgcctggcccgcagc i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2509364 288 + 5252280 CCACCCGTAGCCTTCCTCCTCTACAGCCCTGAGCACCCGGGCCCACCCTGCTGATGTGGCT--CTGGACTGCTCCTTTCCTCCAGATTTCCCCAGCCAGGTC-AGTCCGAACACTGCCACTAGATTGCTT--------------TTTCAAAATGTATTCCTCTGTTTAGAAGCATCTTGCTGCCCCAACTTGCCT-GGAACTAAGATCTGACCCCTGTGACTTGATATCCCAGGCTTGCT---GCCTCTGCGACCCAG---CCCCTCATCG----TGGGTCCCC--GAGCCTGGCACAGTAAATATCTGTCTCACAGC i otoGar3.GL873658 C 0 I 143 s dasNov3.JH580157 525598 245 + 2232271 TTGTCTCCTACTTTCCTTCC--------------------TTC------GTTGAT-CAACA--CCC-ACTGCTGACAGTCTGGTTAAGACCCTT-----ATA----CTTCATGCTTCCGCTA-----------------------TTGAAATTGTTCCTCACTACTTA--ACTTTCCGGTAGCTT-TTCT--CAT-ATAATTCAAGTCTGATCTCTGTAATTTGAGAAAAGAGGCTTTCCATGCCTTCCATTAtttgacatgttattgtttgccatttacctccg-taacctagcatag----cacctggcacatagt i dasNov3.JH580157 I 41 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I a score=461955.000000 s hg38.chr2_KI270769v1_alt 25469 48 + 120616 aggcagtcagtaaatggccactgagtgaatgaatGAGGAAATGCAGAT s panTro5.chr2A 3479995 48 + 111504155 aggcagtcagtaaatggccactgagtgaatgaatGAGGAAATGCAGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3350196 48 + 114371477 aggcagtcagtaaatggccactgagtgaatgaatGAGGAAATGCAGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 223557 48 + 637652 aggcagtcagtaaatggccactgagtgaatgaatGAGGAAATGCAGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3021436 48 + 81552678 aggcggtcagtaaatggccgctgagtgaatgaatGAGGAAATGCAGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3281520 48 + 108979918 aggcggtcagtcaatggccactaagtgaatggatGAGGAAATGCAGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4994589 48 - 111193037 aggcggtcagtcaatggccactaagtgaatggatGAGGAAATGCAGAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3389316 48 + 3644372 aggcggtcagtcaatggccactaagtgaatggatGAGGAAATGCAGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3342440 48 - 10304083 aggcggtcagtcaatggctgctaagtgaatggatGAGGAAATGCAGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3426458 48 - 107702431 aggcagtcagtcaatggccgctaagtgaatggatGAGGAAATGCAGAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 961523 48 + 1565135 aggtggtcagtcaatggctgctaagtgaatggatGAGGAAATGCAGAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3332751 48 - 13651311 aggcggtcagtaaatggccgctaagtgaatggatGAGGAAATGCAGAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3425988 47 - 108792865 aggtggtcagtaggtggccgctgagtgaacagatGAGAAAATGCAG-T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3080227 48 - 7082604 aggtggtctgtaagtgggcactgagtgaatagatGAGAAAATGCAGAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 565996 48 + 5243153 aggtggtcagtaagtggctactgagtgaaAAGATGAGGAAATGCAGAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1899279 48 - 1938448 aggtggtcagtaagtggccgctgagtgaatagatGAGAAAATGCAGAT i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 525843 43 + 2232271 aaacatttgataaatacttACtg-----gtgggtagggactcacagat i dasNov3.JH580157 C 0 I 2380 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e otoGar3.GL873658 2509652 143 + 5252280 I a score=3161487.000000 s hg38.chr2_KI270769v1_alt 25517 347 + 120616 TCCGCCAACATTTACTCATCGAACTTCTTTGTTCTTCTTTCCATGAGAATTAAAACCTTAAGTTTCTCATTTTTAAAAATGGTCATTggccgggcgtgatggctcacgcctg-taatctcagcactttgggaggccgaggcaggcagatcaccggaggtcaggagctcgagaccagcctggccaacatggcgaaaccccatctctactaaaaatacaaact----------ttagccgggtgtggtggcgggcgcctgtagt-cccagctactcaggaggttgaggcaagagaatcacttgaacccaggaggcggagattgcagcgagtcgagattgtgccaccgcactccagcctggg s panTro5.chr2A 3480043 347 + 111504155 TCCGCCAACATTTACTCATCGAACTTCTTTGTTCTTCTTTCCACGAGAATTAAAACCTTAAGTTTCTCATTTTTAAAAATGGTCATTggccgggcgtgatggctcacgcctg-taatctcagcactttgggaggccgaggcaggcagatcaccggaggtcaggagctcgagaccagcctggccaacatggcgaaaccccgtctctactaaaaatacaaact----------ttagccgggtgtggtggcaggcgcctgtagt-cccagctactcaggaggttgaggcaagagaatcacttgaacccaggaggcggagattgcagcgagtcgagattgtgccaccacactccagcctggg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3350244 347 + 114371477 TCCGCCAACATTTACTCATCGAACTTCTTTGTTCTTCTTTCCACGAGAATTAAAACCTTAAGTTTCTCATTTTTAAAAATGGTCATTggccgggcgtgatggctcacgcctg-taatctcagcactttgggaggccgaggcaggcagatcaccggaggtcaggagctcgagaccagcctggccaacatggcgaaaccccgtctctactaaaaatacaaact----------ttagccgggcgtggtggcgggcgcctgtagt-cccagctactcaggaggttgaggcaagagaatcacttgaacccaggaggcggagattgcagcgagtcgagattgtgccaccacactccagcctggg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 223605 347 + 637652 TCCGCCAACATTTACTCATCGAACTTCTTTGTTCTCCTTTCCACGAGAATTAAAACCTTAAGTTTCTCATTTTTAAAAATGGTCATTggccgggcgtgatggctcacgcctg-taatctcagcactttgggaggccgaggcaggcagatcaccggaggtcaggagctcaagaccagcctggccaacatggcgaaaccccgtctctactaaaaatacaaact----------ttagccgggcatggtggcgggcgcctgtagt-cccagctactcaggaggttgaggcaagagaatcgcttgaacccaggaggcggagattgcagcaagttgagattgtgccaccgcactccagcctggg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3021484 347 + 81552678 TCTGCCAACATTTACTCATCGATCTTCTTTGTTCTCCTTTCCACGAGAATTAAAACCTGAAGTTTCTCATTTTTAAAAATGGTCATTggccaggtgtgatggctcatgcctg-taatcccagcactttgggaggctgaggcaggcagatcaccggaggtcaagagctcgagaccagcctggccaacatggcaaaaccccatctctactaaaagtacaaaaa----------ttagccgggcgtggtggcaggtgcctatagt-cccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggtggagattgcagcgagtcgagatcgtgccaccgcactccagcctggg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3281568 343 + 108979918 TTCGCCAATATTTATTCATT-ACCTTCTTTGTTCTCCTTTCCACGAAAATTAAAACCTTAAGTTTCTCATTTTT-AAAATGATCATTggccgggcgtgatagctcacacctattaatcttagcactttggga-gctgaggcaggcagatcaccagaggtcagg-gctcaagaccagcctggccaacatggcgaaaccccgtctctactaaaaacacaaaaa----------ttagccaggcgtggtggcaggtgcctgtagtccccagctaccc-cgagacagaggcaagagaatcacttgaacccaggaggcgga-gtggtaatgagtcaagatcatgccactgcactccagcctggg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4994637 345 - 111193037 TTCGCCAATATTTATTCATT-ACCTTCTTTGTTCTCCTTTCCACGAAAATTAAAACCTTAAGTTTCTCATTTTT-AAAATGATCATTggccgggcgtgatagctcacaccta-taatcttagcactttgggaggctgaggcaggcagatcaccagaggtcaggagctcaagaccagcctggccaacatggcgaaaccccgtctctactaaaaacacaaaaa----------ttagccaggcgtggtggcaggtgcctgtagt-cccagctacccgggagacagaggcaagagaatcacttgaacccaggaggcggaggttgtagtgagtcaagatcatgccactgcactccagcctggg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3389364 345 + 3644372 TTTGCCAATATTTATTCATT-ACCTTCTTTGTTCTCCTTTCCACGAAAATTAAAACCTTAAGTTTCTCATTTTT-AAAATGATCATTggccgggcgtgatagctcacaccta-taatcttagcactttgggaggctgaggcaggcagatcaccagaggtcaggagctcaagaccagcctggccaacatggcgaaaccccgtctctactaaaaatacaaaaa----------ttagccaggcgtggtggcaggtgcctatagt-cccagctacacgggagacagaggcaagagaatcacttgaacccaggaggcggaggttgtagtgagtcaagatcatgccattgcactccagcctggg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3342488 345 - 10304083 TTCGCCAATATTTATTCATT-ACCTTCTTTGTTCTCCTTTCCACGAAAATTAAAACCTTAAGTTTCTCATTTTT-AAAATGATCATTggccgggcgtgatggctcacaccta-taatcttagcactttgggaggctgaggcaggcagatcaccagaggtcaggagctcaagaccagcctggccaacatggcgaaaccccatctctactaaaaatacaaaaa----------ttagccaggcgtggtggcaggtgcctatagt-cccagctacacaggaaacagaggcaagagaatcacttgaacccaggaggcggaggttgtagtgagtcaagatcatgccattgcactccagcctggg i cerAty1.NW_012000820v1 C 0 I 1487 s chlSab2.chr14 3426506 345 - 107702431 TTCGCCAATATTTATTCATT-ACCTTCTTTGTTCTCCTGTCCACGAAAATTAAAACCTTAAGTTTCTCATTTTT-AAAATGATCATTggccgggcatgatgtctcacaccta-taatcttagcactttgggaggctgaggcaggcagatcaccagaggtcaggagctcaagaccagcctggccaacatggcaaaaccccatctctactaaaaatacaaaaa----------ttagccaggcgtggtggcaggtgcctatagt-cccagctacacaggagactgaggcaagagaatcacttgaacccaggaggtggaggttgtagtgagtcgagatcgtgccattgcactccagcctggg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 961571 345 + 1565135 TTCGCCAATATTTATTCATT-ACCTTCTTTGTTCTCCTTTCCACGAAAATTAAAACCTTAAGTTTCTCATTTTT-AAAATGATCATTggccgggcgtgatggctcacacctg-taatcttagcactttgggaggctgaggcaggcagatcaccagaggtcaggagctcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaa----------ttagccagacgtggtgacaggtgcctatagt-cccagctacacaggagactgaggcaagagaatcacttgaacccaggaggtggaggttgtagtgagtcgagatcgtgccactgcactccagcctggg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3332799 345 - 13651311 TTCACCAATATTTATTCATT-ACCTTCTTTGTTCTCCTTTCCGCGAAAATTAAAACTTTAAGTTTCTCATTTTT-AAAATGATCATTggctgggcgtgatggcttacgccta-taatcttagcacttagggaggctgaggcaggcagatcaccagaggtcaggagctcaagaccagcctggccaacatggcaaaaacccgtctctactaaaaatacaaaaa----------ttagccaggcgtggtgtcaggtgcctatagt-tccagctacatgggagactgaggcaagagaatcacttgcacccaggaggcggaggttgtagtgagtcgagatcgtgccactgcactccagcctggg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3426035 353 - 108792865 TCCGCCAAC-TTTACTCATC-AGCTTCTTTGTTATCCTTTCCACGAGAACTAAAACCTCAGGTTTCTCATTTGTAAAAGTGGTCATCAgccgggtgcagtggctcatgcctg-taatcccagcactttgggaggccatgatgggcagatcaccggaggtcaggaattcgagactagcctggccatcatggcaaaaccccatctctactaaaaatacaaaacttatttttatttagccaggcgtggtggcaggcgcctgtggt-cccagctattccagaggctgaggcaggagaattgcttgaacccaggaggcagaacttgcagcgagccgagat--tgccattttactccagcctggg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3080275 353 - 7082604 GCCGCCAAC-TTTACTCATC-ACCTTCTTTGTTATCCTTTCCATGAGAATTAAAATCTCAAGTTTCTCATTTTTAAAAATGGTCATTggccgggtgcagtggctcatgcctg-caatcccagcactttgggaggccaagatgggcagatcactggaggtcaggaattcgagactagcctggccaacatggcaaaactccatctctactaaaaatacaaaatttatttttatttagtcaggcgtgatggcaggcgcctgtagt-cccagctattcgggaggctgaggcaggagaattgcttgaacccaggaggcggaacttgcagtgagccaagat--tgccgttgcactccagcctggg i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 566044 353 + 5243153 TCCACCAAC-TTTACTCATC-ACCTTGTTTGTTATCCTTTCCATGAGAATTAAAACCTCAAGTTTCTCATTTTTGAAAATGGCCATCggccaggtgcagtggctcatgcctg-taatcccagcactttgggaggccaagatgggcagatcaccggaggtcaggaattcgagactagcctggccagcatgacaaaaccccatctctactaaaaatacaaaaattatttttatttagccaggcatgatggcaggtgcctgtagt-cccagctattcgggaggctgagagaggagaattgcttgaacccaggaggcggaacttgcagtgagccgagat--tgccattgcattccagcctgag i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1899327 353 - 1938448 TCTGCCAAC-TTTACTCATC-ACCTTCTTTGTTACCCTTTCCATGAGAATTAAAACCTCAAGTTTCTCATTTTTAAAAATGGTCATCAgccgggtgcagtggctcatgcctc-taatcccagcactttgagaggccaagatgggcagatcaccagaggtcaggaattcgagactagcctggccaacgtggcaaaaccccatctctactaaaaatacaaaaattatttttatttagctaggcatgatggcaggcgcctgtagt-cccagctatttgggaggctgaggcaggagaattgcttgaacccaggaggcggaacttgcagtgaaccgagat--tgccattgcactccagcctggg i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I a score=80060.000000 s hg38.chr2_KI270769v1_alt 25864 10 + 120616 caatagagac s panTro5.chr2A 3480390 10 + 111504155 caatagagac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3350591 10 + 114371477 caatagagac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 223952 8 + 637652 ca--agagac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3021831 10 + 81552678 cgatagagac i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3281911 10 + 108979918 cgacagagac i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4994982 10 - 111193037 cgacagagac i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3389709 10 + 3644372 cgacagagac i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3344320 10 - 10304083 cgacagagat i cerAty1.NW_012000820v1 I 1487 C 0 s chlSab2.chr14 3426851 10 - 107702431 cgacagagac i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 961916 10 + 1565135 cgacagagac i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3333144 10 - 13651311 cgacagagac i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3426388 10 - 108792865 cgacagagac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3080628 10 - 7082604 cgacagagac i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 566397 10 + 5243153 tgacagagac i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1899680 8 - 1938448 cgac--agac i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I a score=571555.000000 s hg38.chr2_KI270769v1_alt 25874 100 + 120616 tctgtctcaaaaaaaaaaaaaaaaaa----aaaaaaaCA-TTGTCATAGTGGcaggcacagtggctaatgcctgtaatcccataatcccagcactctgggaggct s panTro5.chr2A 3480400 88 + 111504155 tctgtctc------------aaaaaa----aaaaaaaCA-TTGTCGTAGTGGcaggcacagtggctaatgcctgtaatcccataatcccagcactctgggaggct i panTro5.chr2A C 0 T 5882 s panPan2.chr2A 3350601 87 + 114371477 tctgtctc-------------aaaaa----aaaaaaaCA-TTGTCATAGTGGcaggcacagtggctaatgcctgtaatcccataatcccagcactctgggaggct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 223960 91 + 637652 tctgtctc---------aaaaaaaaa----aaaaaaaaa-TTGTCATAGTGGcaggcacagtggctaatgcctgtaatcccataatccctgcactctgggaggct i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3281921 81 + 108979918 tctgtctc-----------aaaaaaa----aaaaaacaaGCTGTCATAGTGGcaggcacagtggctcgtgtctgtaatccca--------gcactct-ggagacc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4994992 79 - 111193037 tctgtctc-------------aaaaa----aaaaaacaa-ctgtcatagtggcaggcacagtggctcgtgtctgtaatccca--------gcactctgggagacc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3389719 84 + 3644372 tctgtctc--------aaaaaaaaaa----aaaaaacaa-CTGTCATAGTGGcaggcacagtggctcgtgtctgtaatccca--------gcactctgggagacc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3344330 83 - 10304083 cctgtctc---------aaaaaaaaa----aaaaaacaa-CTGTCATAGTGGcaggcacagt-gctcgtgtctgtaatccca-------ggcactctgggagacc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3426861 80 - 107702431 tctgtctc------------aaaaaa----aaaaaacaa-CTGTCATAGTGGcaggcacagtggctcgtgtctgtaatccca--------gcactctgggagacc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 961926 75 + 1565135 tctgtctc------------aaaaaa----aa-----aa-TTGTCATAGTGGcaggcacagtggctcgtgtctgtaatccca--------gcactctgggagacc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3333154 81 - 13651311 tctgtctc-----------aaaaaaa----aaaaaaaaa-TTGTCATAGTGGcaggcacagtggctcgtgtctgtaatccca--------gcactctgggagacc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3426398 79 - 108792865 tccacctc-------------aaaaa----aaaaaaaaa-TTGTCATAGTGGcaggcacagtggctcacgcctgtaattcca--------gcactcttggaggcc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3080638 83 - 7082604 tccgtctc-------------aaaaaaaagaaaaaaaaa-TTGTCATAGTAGcaggcatagtgactcatgcctgtaattcca--------gcactctgggaggcc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 566407 78 + 5243153 tctgtccc-------------aaaa-----aaaaaaaaa-TTGTCATAGCGGcaggcacagtggctcacgcctgtaattcca--------gcactctgggaggcc i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1899688 78 - 1938448 tccgtctt-------------aaaa-----aaaaaaaaa-TTGTCATAGTGGcaggcacagtggctcacgcttgtaattcca--------gcactctgggaggcc i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e nomLeu3.chr19 3021841 0 + 81552678 C a score=484031.000000 s hg38.chr2_KI270769v1_alt 25974 74 + 120616 gaggtgagt-agatcactt--cagcccaga-ag-ttcaagacaa-gcctgggcaacatgggaaaaccctgtctctacaaa s panTro5.chr2A 3474606 80 + 111504155 gaggtgagtaagatcactttccagcccagacagtttcaagacaaggcctgggccacaatgggaaaccatgtctctacaaa i panTro5.chr2A T 5882 I 5802 s gorGor5.CYUI01015435v1 224051 74 + 637652 gaggtgagt-agatcactt--cagcccaga-ag-ttcaagacaa-gcctgggcaacatgggaaaaccctgtctctacaaa i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3282002 72 + 108979918 aa-gtacgt-agctcactt--cagcccaga-ag-tgcaggacaa-gcctgggcaacat-ggaaaaccccgtctctacaaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4995071 74 - 111193037 aaggtacgt-agctcactt--cagcccaga-ag-tgcaggacaa-gcctgggcaacatgggaaaaccccgtctctacaaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3389803 74 + 3644372 aaggtacgt-agctcactt--cagcccaga-ag-tgcaggacaa-gcctgggcaacatgggaaaaccccgtctctacaaa i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3344413 72 - 10304083 aaggtacgt-agctcactt--cagcccaga-ag-tgcaggacaa-gcctgggcaacat-ggaaaaccccgtctctac-aa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3426941 74 - 107702431 gaggtaagt-agctcactt--cagcccaga-ag-tgcaggagaa-gcctgggcaacatgggaaaaccccgtctctacaaa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 962001 74 + 1565135 gaggtacgt-agctcactt--cagcccaga-ag-tgcaggacaa-gcctgggcaacatgggaaaaccccgtctctacaaa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3333235 74 - 13651311 gaggtaagt-agctcactt--cagcccagg-ag-tgcaggacaa-gccagggcaacatgggaaaaccccgtctctacaaa i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3426477 72 - 108792865 gaggtgagt-agatcactt--cagcccaga-ag-ttcaggacaa-g-ctgggtaacat-gggaaaccctgtctctacaaa i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3080721 73 - 7082604 aaagtgagt-agatcactt--cagcccaga-ag-ttcaggacaa-gcctgggtaacag-gggaaaccctgtctctacaaa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 566485 73 + 5243153 gaggtgagt-agatcactt--cagcccaga-ag-ttcaggacaa-gcctgggtaacat-gggaaaccctgtctctacaaa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1899766 73 - 1938448 gaggtgagt-agatcactt--cagcccaga-ag-ttcaggacaa-gcctgggtaacat-gggaaaccctgtctctacaaa i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C a score=2296308.000000 s hg38.chr2_KI270769v1_alt 26048 405 + 120616 aaatac-aaaaattagctgggt-gtggtgacaca-t---acccgtagtcccagctactcggaggctgaggtgggaggat-cacttgagcccaggaggtgaagctgtggtcgcaccgctgcactccagcccagatgacagagcgaggccctgtctc-------aaaaaaaaaGTCATAATAATGCCTACTTTATAA---TGTTATGACCAAAAATAATAACAGCCCATGCATTTGCAGGG-CTAACAGTCCAACAGTCCAGCAGGGAAGACGTACGCGGAGAGGTTATGAAAGTGCCATGCTGCAGAGCCC-TGGGGAGAAAAGCTGGCGTTGCCtgcacactcaccaggctcccagcatggttctgagtacttcacctgtgttaactgttaatcctcacaagaatcacgaagaactattaatac s gorGor5.CYUI01015435v1 224125 404 + 637652 aaatac-aaaaattagctgggt-gtggtgacaca-t---acccgtagtcccagctactcggaggctgaggtgggaggat-cacttgagcccaggaggtgaagctgtggtcgcaccgctgcactccagcccagatgacagagcgaggccctgtctc-------aaaaaaaa-GTCATAATAATGCCTACTTTATAA---TGTTATGACCAAAAATAATAACAGCCCATGCATTTGCAGGG-CTAACAGTCCAACAGTCCAGCAGGGAAGACGTACGCGGAGAGGTTATGAAAGTGCCATGCTGCAGAGCCC-TGGGGAGaaaagctggcattgcctgcacactcaccaggctcccagcatggttctgagtacttcacctgtgttaactgttaatcctcacaagaatcacgaagaactattaatac i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3282074 409 + 108979918 aaatacaaaaaattagctgggt-gtggtgacaca-----gcctgtagt-ccagctactcggagg-tgaggtgggaggatccacttgagcccaggaggtcaagctgtggtcgcacctctgcactcaagcctcgatgacagagtgaggccctgtctc-----aagaaaaaaaaGTCATAATAATGCCTACTTTGTAATGTTGTTATGACCAAAAATAATAACAGCGCACGCATTTACAGAG-CTAACAGTCCAACAGTCCCGCAGGGAAGATGTACGCGGAGAGGTTATGAAGGTACCGCGCTGCAGAGCCC-CAGGGAGAAAAGCTGGCGTTGCCtgcgccctcaccaggctcccagcatggttctgagtacttcacctgtattaactgttaatcctcactagaatcacgaagaactattaatac i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4995145 409 - 111193037 aaatac-aaaaattagctgggt-gtggtgacaca-----gcctgtagtcccagctactcggaggctgaggtgggaggat-cacttgagcccaggaggtcaagctgtggtcgcacctctgcactcaagcctcgataacagagtgaggccctgtctc-----aaaaaaaaaaagtcataataatgcctactttgtaatgttgttatgaCCAAAAATAATAACAGCGCACGCATTTACAGAG-CTAACAGTCCAACAGTCCCGCAGGGAAGATGTACGCGGAGAGGTTATGAAGGTACCGCGCTGCAGAGCCC-CAGGGAGAAAAGCTGGCGTTGCCtgcgccctcaccaggctcccagcatggttctgagtacttcacctgtattaactgttaatcctcactagaatcacgaagaactattaatac i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3389877 411 + 3644372 aaatac-aaaaattagctgggt-gtggtgacaca-t---gcctgtagtcccagctactcggaggctgaggtgggaggat-cacttgagcccaggaggtcaagctgtggtcgcacctctgcactcaagcctcgatgacagagtgaggccctgtctc----aaaaaaaaaaaaGTCATAATAATGCCTACTTTGTAATGTTGTTATGACCAAAAATAATAACAGCGCACGCATTTACAGAG-CTAACAGTCCAACAGTCCCGCAGGGAAGATGTACGCGGAGAGGTTATGAAGGTACCGCGCTGCAGAGCCC-CGGGGAGAAAAGCTGGCGTTGCCtgcgccctcaccaggctcccagcatggttctgagtacttcacctgtattaactgttaatcctcactagaatcacgaagaactattaatac i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3344485 414 - 10304083 aaatac-aaaaatcagctgggtggtggtgacaccat---gcctgtagtcccagctactcggaggctgaggtgggaggat-cacttgagcccaggaggtcaagctgtggtcgcaccactgcactcaagcctgaatgacagagcgaggccctgtctc---aaaaaaaaaaaaaGTCATAATAATGCCTACTTTGTAATGTTGTTATGACCAAAAATAATAACAGCGCACGCATTTACAGAG-CTAACAGTCCAACAGTCCCGCAGGGAAGACGTACGCGGAGAGGTTGTGAAGGTACCGCGCTGCAGAGCCC-CGGGGAGAAAAGCTGGCGTTGCCtgcgcactcaccaggctcccagcatggttctgagtacttcacctgtattaactgttaatcctcactggaatcatgaagaactattaatac i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3427015 399 - 107702431 aaatac-aaaaattagctgggt-gtggtggcaca-t---gcctgtagtcccagcgactcagaggctgaggtgggaggat-cacttgagcccaggaggtcaagctgtggtcgcacccctgcactgcagcctggatgacagagtgaggccctgcctcaaaaaaaaaaaaaaaaGTCATAATAATGCCTACTTTATAATGTTGTTATGACCAAAAATAG----------------TACAGGG-CTAACGGTCCAACAGTCCAGCAGGGAAGACGTACGTGGAGAGGTTATGAAGGTACCGCGCCGCAGAGCCC-TGGGGAGAAAAGCTGGCGTTGCCtgtgcactcaccaggttcccagcatggttctgagtacttcacctgtattaactgttactcctcactagaatcacgaagaactattaatac i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 962075 412 + 1565135 aaatac-aaaaatcagctgggt-gtggtgacaca-t---gcttgtagtcccagctactcggaggctgaggtgggaggat-cacttgagcccgggaggtcaagctgtggtcacaccactgcactcaagcctggatgacagagcgaggccctgtctc---aaaaaaaaaaaaaGTCATAATAATGCCTACTTTATAATGTTGTTACGACCGAAAATAATAACAGCGCACGCATTTACAGGG-CTAATGGTCCAACAGTCCCGCAGGGAAGACGTACGCGGAGAGGTTGTGAAGGTACCGCGCTGCAGAGCCC-CGGGGAGAAAAGCTGGCGTTGCCtgcgcactcaccaggctcccagcatggttctgagtacttcacctgtattaactgttaatcctcactagaatcacgaagaactattaatac i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3333309 408 - 13651311 aaatac--aaaattagctgggt-gtggtgacaca-t---gcctgtagtcccagctactcggaggctgaggtgggaggat-cacttgagcccaggaggtcaagctgtggtcgcacccctgcactccagcctggatgacagagcgaggccctgtctc------aaaaaaaaaaGTCATAATAATGCCTACTTTATAATGTTGTTATGACTGAAAATAATAACAGCCCACGCATTTACAGGG-CTAACGGTGCAACAGTCCAGCAGGGAAGACGTACGTGGAGAGGTTATGAAGGTACCGCGCTGCAGAGCCC-TGGGGAGAaaagctggcgttgcctgtgcactcagcaggctcccagcatggttctgagtacttcacctgtattaactgttaatcctcactagaatcacgaagaactattaatac i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3426549 391 - 108792865 aaatac-aaaaattagctgagc-atggtgacaca-cgcagcctgtagtccca-ctactcggaggctgaggtgagagggt-caccagagcccaggaagtcaagctgtgatctcatcactgcactcgaacctggatgacaaagtgagaccctgtctc-------aaaagaaaaGTCATCATAATGCCTACTTTGTAATGTTATTATGACCAAAAATAA---CAGCCCGTGCATTTG---------------CACAAGTCCAGGAGGGAAAACGTACGTGGAGAGGTTACGGAAGTGCTGTGCTGCGGAGCCC-AGGTGGGAGAA--CGGCGTTCCCtgagcactcaccgtgctcccagcatggtcctgagtagtttacctgtgttaactgtgaatcctcacgaGACTCACCAAGAACTACTCATAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3080794 404 - 7082604 aaatac-aaaaattagctgggc-atggtgacaca-cgcagccggtagtccca-ctactcggaggctgaggtgagaggat-cacttgagcccagggagtcaagctgtgatcgcaccactgcactccaacctggatgacagagcgagactctgtctc-------aaaagagaaGTCATCATAATGCCTATTTTGTAATGTTATTATGACCAAAAATAA---CAGCCCGTGCATTTACAGGG-CTTACAGTCCACAAGTCCAGGAGGGAAGACGTATGTGGAGAGGTTACGGAAGTGCTGTGCTGAGGAGCCA-GGTGGGGAGCA--TGGCGTT-CCtgagcactcaccgtgctcccagcgtggttctgagtaccttacctgggttaactgtgaatcctcacgagaatcaccaagagctaCTAATAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 566558 406 + 5243153 aaatac-aaaaattagctgggc-atggtgacaca-cgccgcctgtagtccca-ctactcggaggctgaggggagaggat-cacttgagcccaggaagtcaaactgtgatcacaccactgcactccaacctggatgacagagcgagaccctgtctc-------aaaagaaaaGTCATCATAATGCCTACTTTGTAATGTTATTATGACCAAGAATAA---CAGCCCGTGCACTTGCGGGGACTTACAGTCCACAAGTCCAGGAGGGAAGGTGTTCGTGGAGAGGTTACGGAAGTGCTATGCCAAGGAGCCCAGGTGGGGAAGA--CGGCGTT-CCtgagcactcaccatgctcccagtgtggttctgagtacttcgcccatgttaaccgtgaatcctcacgagaatcACCAAGAACTACTAATAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1899839 399 - 1938448 aaatac-aaaaattagctgggc-atggtgacaca-cgcagcctgtagtccca-ctactcggaggct-------gaggat-cacttgagcccaggaagtcaagctgtgatcgcaccgctgcactccaacctggatgacagagcgagaccctgtctc-------aaaagaaaaGTCATCATAATGCCTACTTTGTAATGTTATTATGACCAAAAATAA---CGGCCCGTGCATTTGCAGGG-CTTACAGTCCACAAGTCCAGGAGGGAAGACGTACGTGGAGAGGTTACGGAAGTGCTGTGCTGAGGAGCCCAGGTGGGGAGAA--TGGTGTTCCCtgagcactcaccgtgctcccagcatggttctgagtacttcacctgtgttaactgtgaatcctcatgagaatcACCAAAAACTACTAATAC i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=10845.000000 s hg38.chr2_KI270769v1_alt 26453 3 + 120616 atc s gorGor5.CYUI01015435v1 224529 3 + 637652 atc i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3282483 3 + 108979918 atc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4995554 3 - 111193037 atc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3390288 3 + 3644372 atc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3344899 3 - 10304083 atc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3427414 3 - 107702431 atc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 962487 3 + 1565135 atc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3333717 3 - 13651311 atc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3426940 3 - 108792865 CTC i calJac3.chr14 C 0 I 6 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3081198 0 - 7082604 C e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e cebCap1.NW_016107454v1 566964 0 + 5243153 C e aotNan1.NW_018507213v1 1900238 0 - 1938448 C e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=663316.000000 s hg38.chr2_KI270769v1_alt 26456 222 + 120616 cattttacttaccaggtaaccaaggcacagttcagcagcctggccggggtcaggtagctgagaatggctgaggagtgatgacctggtagtcctcctcccagacccttcccttcaccCAGTGACTCCGGGATCTGCAGGGGTGGCCCAGCCAGTCCCGGGGCCTCTCCGTTCCCCAGCTCTTGATTCTCCCAGGACTACTTCTGGCTCTTGTGGGGGCCACTT s gorGor5.CYUI01015435v1 224532 221 + 637652 cattttacttaccaggtaaccaaggcacagttcagcagcctggctggggtcaggtagctgagaatggctgaggagtgatgacctggtagtcctcctcccagacccttcccttcaccCAGTGACTCCGGGATCTGCAGGGGTGGCCCAGCCAGTCCCGGGGCCTCTTCGTTCCCCAGCTCTTGATTCTCCCAGGACTACTTCTGGCTCTTGTGGGG-CCACTT i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3282486 217 + 108979918 cgttttacttaccaggta-ccaaggcacagttcagcagcctggcgggggtcaggtagctgagaatggctgaggagcggtgacctggtagtcctcctcccagacccttcccttcaccCCGCAACTCCAGGGTCAGCAGGGGCGGCCCAGCCAGTCCAGGGGCCTCTCTGTTGCCCAGCTC----TTCCCCCAGGCCGTCTTCTGGCTCTTGTGGGGGCCACTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4995557 217 - 111193037 cgttttacttaccaggta-ccaaggcacagttcagcagcctggcgggggtcaggtagctgagaatggctgaggagcggtgacctggtagtcctcctcccagacccttcccttcaccCCGCAACTCCAGGGTCAGCAGGGGCGGCCCAGCCAGTCCAGGGGCCTCTCTGTTGCCCAGCTC----TTCCCCCAGGCCGTCTTCTGGCTCTTGTGGGGGCCACTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3390291 217 + 3644372 cgttttacttaccaggta-ccaaggcacagttcagcagcctggcgggggtcaggtagctgagaatggctgagGAGCGGTGACCTGGTAGTCCTCCTCCCAGACCCTTCCCTTCACCCCGCAACTCCAGGGTCAGCAGGGGCGGCCCAGCCAGTCCAGGGGCCTCTCTGTTGCCCAGCTC----TTCCCCGAGGCCGTCTTCTGGCTCTTGTGGGGGCCACTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3344902 217 - 10304083 cgttttacttaccaggca-ccaaggcacagttcagcagcctggcgggggtcaggtagctgagaatggctgagGAGCGGTGACCTGGTAGTCCTCCTCCCAGACCCTTCCCTTCGCCCCGCAACTCCAGGGTCAGCAGGGGCGGCCCAGCCAGTCCAGGGGCCTCTCTGTTGCCCAGCTC----TTCCCCCAGGCCGTCTTCTGGCTCTTGTGGGGGCCACTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3427417 217 - 107702431 cgttttacttaccaggta-ccaaggcacagttcagcagcctggctggggtcaggtagctgagaatggctgaggagcagtgacctggtagtcctcctcccagacccttcccttcaccCCGCAACTCCAGGGTCAGCAGGGGCGGCCCAGCCAGTCCAGGGGCCTCTCTGTTGCCCAGCTC----TTCCCCCAGGCCATCTTCTGGCTCTTGTGGGGGCCACTT i chlSab2.chr14 C 0 I 11 s manLeu1.NW_012104432v1 962490 217 + 1565135 cgttttacttaccaggca-ccaaggcacagttcagcagcctggcgggggtcaggtagctgagaatggctgaggagcggtgacctggtagtcctcctcccagacccttcccttcaccCCGCAACTCCAGGGTCAGCAGGGGCGGCCCAGCCAGTCCAGGGGCCTCTCTGTTGCCCAGCTC----TTCCCCCAGGCCGTCTTCTGGCTCTTGTGGGGGCCACTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3333720 197 - 13651311 cgttttacTTACCAGGTA---------------------CTGGCTGGGGTCAGGTAGCTGAGAATGGCTGAGGAGTGGTGACCTGGTAGTCCTCCTCCCAGACCCTTCCCTTCACCCCGCAACTCCAGGGTCAGCAGGGGCGGCCCAGCCAGTCCAGGGGCCTCTCTGTTCCCCAGCTC----TTCCCCCAGGCCGTCTTCTGGCTCTTGTGGGGGCCACTT i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3081198 0 - 7082604 C e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e cebCap1.NW_016107454v1 566964 0 + 5243153 C e aotNan1.NW_018507213v1 1900238 0 - 1938448 C e calJac3.chr14 3426943 6 - 108792865 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=7455.000000 s hg38.chr2_KI270769v1_alt 26678 22 + 120616 GGAGCCCTGTGATC-----ACCTTGTG s gorGor5.CYUI01015435v1 224753 22 + 637652 GGAGCCTTGTGATC-----ACCTTGTG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3282703 11 + 108979918 ---CTCCCGTGGTC------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4995774 11 - 111193037 ---CTCCCGTGGTC------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3390508 11 + 3644372 ---CTCCCGTGGTC------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3345119 11 - 10304083 ---CTCCCGTGGTC------------- i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 962707 14 + 1565135 ---CTCCCGTGGTCACC---------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3333917 13 - 13651311 ---CTCCCGTGGTC---AC-------- i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3081198 0 - 7082604 C e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e cebCap1.NW_016107454v1 566964 0 + 5243153 C e aotNan1.NW_018507213v1 1900238 0 - 1938448 C e calJac3.chr14 3426943 6 - 108792865 I e chlSab2.chr14 3427634 11 - 107702431 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=980244.000000 s hg38.chr2_KI270769v1_alt 26700 314 + 120616 ACGCTTGGAGCCTT-GTGATCACCCACACCCTATACAGCTCCAGTGGGACATCTGCCATTTCCTGAGTGCCCTCTCCCGCCAGCCAGCTGGTCACTGTGGCATCCACACCCACATGTGGTTCTTCTGCCTTCCTGCACACCGTGGCTCACCAATCTGCTTGCTGACTCTGCCTCAGCACCTCGTTACTTCACTTCCTTCTCCATCTAGCGTGGTTTCCATGATCCACATCTCACACGTGCCTTTCCCAAATCCCAAAATGCCTGTTCCTTCATTCTTCCACTGCACATATCTCAGATACCTGCGCTTTTGACAGG s gorGor5.CYUI01015435v1 224775 314 + 637652 ACAGTTGGAGCCTT-GTGATCACCCACACCCTATACAGCTCCAGTGGGACATCTGCCATTTCCTGAGTGCCCTCTCCCGCCAGCCAGCTGGTCACTGTGGCATCCACACCCACATGTGGTTCTTCTGCCTTCCTGCACACCGTGGCTCACCGATCTGCTTGCTGACTCTGCCTCAGCACCTCGTTACTTCACTTCCTTCTCTACCTAGCGTGGTTTCCATGTTCCACATCTCACACGTGCCTTTCCCAAATCCCAAAATGCCTGTTCCTTCATTCTTCCACTGCACATATCTCAGATACCTGCGCTTTTGACAGG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3282714 315 + 108979918 ACGCTTGGAGCCTTAATGATCACCCACACCCTACACAGCTCCAGCGGCACATCTGCTGTTTCCTGAGTGCCCTCTCCTGCCAGCCAGCTGGTCAGTGTGGCATCCACACCCATGTGTGGTTCTTCTGCCTTCCTGCATGCCATGGCTCACCGATCTGCTCGCTGACTGTGCCTCCGCACCTCGTTACTTCACTTCCTTCTCTACCCAGCGTGGTTTCCATAATCCATATCTCACACATGCCTTTCCCAAATCCCAGAATGCCTGCTCCTTCATTCTTCCACTGCACACATCTCAGATACCTGCGCTCTTGACAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4995785 315 - 111193037 ACGCTTGGAGCCTTAATGATCACCCACACCCTACACAGCTCCAGCGGCACATCTGCTGTTTCCTGAGTGCCCTCTCCTGCCAGCCAGCTGGTCAGTGTGGCATCCACACCCATGTGTGGTTCTTCTGCCTTCCTGCATGCCATGGCTCACCGATCTGCTCGCTGACTGTGCCTCCGCACCTCGTTACTTCACTTCCTTCTCTACCCAGCGTGGTTTCCATAATCCATATCTCACACATGCCTTTCCCAAATCCCAGAATGCCTGCTCCTTCATTCTTCCACTGCACACATCTCAGATACCTGCGCTCTTGACAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3390519 315 + 3644372 ACGCTTGGAGCCTTAATAATCACCCACACCCTACACAGCTCCAGCGGCACATCTGCTGTTTCCTGAGTGCCCTCTCCTGCCAGCCAGCTGGTCAGTGTGGCATCCACACCCATGTGTGGTTCTTCTGCCTTCCTGCATGCCATGGCTCACCGATCTGCTCGCTGactgtgcctccgcacctcgttacttcacttccttctctacccagcgtggtttccataatccatatctcacacatgcctttcccaaatcccagaatgcctgctccttcattcttccactgcacacatctcagatacctgcgctcttgacagg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3345130 315 - 10304083 ACGCTTGGAGCCTTAATGATCACCCACAGCCTACACAGCTCCAGCGGCACATCTGCTGTTTCCTGAGTGCCCTCTCCTGCCAGCCAGCTGGTCAGTGTGGCATCCACACCCACATCCACACCTTCTGCCTTCCTGCGCGCCGTGGCTCACCGATCTGCTCGCTGactgtgcctccgcacctcgttacttcacttccttctctacccagcgtggtttccatgatccacatctcacacacgcctttcccaaatcccagaatgcctgctccttcattcttccactgcacacatctcagatacctgcgctcttgacagg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3427645 315 - 107702431 ACGCTTGGAGCCTTAATGATCACCCACACCCTACACAGCTCCAGCGGCACATCTGCCGTTTCCTGAGTGCCCTCTCCCGCCAGCCAGCTGGTCAGTGTGGCATCCACACCCACGTGTGGTTCTTCTGCCTTCCTGCATGCCGTGGCTCACCGATCTGCTCGCTGactgtgcctccgcacctcattacttcacttccttctctacccagcgtggtttccatgatccacatctcacacatgcctttcccaaatcccaaaatgcctgctccttcattcttccactgcacacatctcagatacctgcgctcttgacagg i chlSab2.chr14 I 11 C 0 s manLeu1.NW_012104432v1 962721 312 + 1565135 ---CTTGGAGCCTTAATGATCACCCACACCCTACACAGCTCCAGCGGCACAGCTGCCATTTCCTGAGTGCCCTCTCCCGCCAGCCAGCTGGTCAGTGTGGCATCCACATCCACATCCACACCTTCTGCCTTCCTGCGCGCCGTGGCTCACCGATCTGCTCGCTGactgtgcctctgcacctcgttacttcacttccttctctacccagcgtggtttccatgatccacatctcacacacgcctttcccaaatcccagaatgcctgctccttcattcttccactgcacacatctcagatacctgcgcttttgacagg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3333930 313 - 13651311 --GCTTGGAGCCTTAATGATCACCCACACCCTACAGAGCTCCAGCGGCACATCTGCCATTTCCTGAGTGCCCTCTCCCGCCAGCCAGCTGGTCAGTGTGACATCCACACCCACCTGTGGTTCTTCTGCCTTCCTGCACGCCGTGGCTTACCGATCTGCTCGCTGACTGTGCCTGCGCACCTCGTTACTTCACTTCCTTCTCTACCCAGCGTGGTTTCCATGATCCACATCTCACACATGCCTTTCCCAAATCCCAGAATGCCTGCTCCTTCATTCTTCCACTGCACACGTCTCAGATACCTGCGCTCTTGACAGG i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3081198 0 - 7082604 C e proCoq1.NW_012151163v1 930538 2674 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e cebCap1.NW_016107454v1 566964 0 + 5243153 C e aotNan1.NW_018507213v1 1900238 0 - 1938448 C e calJac3.chr14 3426943 6 - 108792865 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=99450.000000 s hg38.chr2_KI270769v1_alt 27014 23 + 120616 TTCAGCCTCCAGCTTCCTCTGCA s gorGor5.CYUI01015435v1 225089 23 + 637652 TTCAGCCTCCAGCTTCCTCTGCA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3283029 23 + 108979918 TTCAGCCTCCAGCTTCCTCTGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4996100 23 - 111193037 TTCAGCCTCCAGCTTCCTCTGCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3390834 23 + 3644372 ttcagcctccagcttcctctgca i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3345445 23 - 10304083 ttcagcctccagcttcctctgca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3427960 23 - 107702431 ttcagcctccagcttcctctgca i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 963033 23 + 1565135 ttcagcctccagcttcctctgca i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3334243 23 - 13651311 TTCAGCCTCCAGCTTCCTCTGCA i colAng1.NW_012118821v1 C 0 C 0 s proCoq1.NW_012151163v1 933212 23 + 1238772 TTCAGCCTCCAGCTTCCTCTGCA i proCoq1.NW_012151163v1 I 2674 I 2468 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3081198 0 - 7082604 C e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e cebCap1.NW_016107454v1 566964 0 + 5243153 C e aotNan1.NW_018507213v1 1900238 0 - 1938448 C e calJac3.chr14 3426943 6 - 108792865 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=483222.000000 s hg38.chr2_KI270769v1_alt 27037 154 + 120616 AGGACACCCAGCCGCTGAGGCTGCAGGAGGAATTCCCACGTCCAAGCATCTGCAGTGATGCTTGGCAGCATCGGGTGCATCATCAGCACTGCAGGGCCTTCCCGTCAGGTTGCTCCGGTCTCTCCCACTGCCCTTTTAGACCATCTCTACCTCT s gorGor5.CYUI01015435v1 225112 153 + 637652 AGGACACCCAGCCGCTGAGGCTGCAGGAGGAATTCCCACGTCCAAGCATCTGCAGTGATGCTTGGCAGCATTGAGTGCATCATCAGCACTGCAGG-CCTTCCTATCAGGTTGCTCTGGTCTCTCCCACTGCCCTTTTAGACCATCTCTACCTCT i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3283052 154 + 108979918 TGGACACCCAGCAGCTGAGGCTGCGGGAGCATTTCCCACATTCAAGCATCGGCAGTGACGCTTGGCAGCGTTGAGTGGATCATCAGCACTGCGGGGCCTTCCTGCCAGGTTGCTCTGGTCTCTCCCACTGCCCTTTTAGACTGTCTCTACCTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4996123 154 - 111193037 TGGACACCCAGCAGCTGAGGCTGCGGGAGCATTTCCCACATTCAAGCATCGGCAGTGACGCTTGGCAGCGTCGAGTGGATCATCAGCACTGCGGGGCCTTCCTGCCAGGTTGCTCTGGTCTCTCCCACTGCCCTTTTAGACTGTCTCTACCTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3390857 154 + 3644372 tggacacccagcagctgaggctgcgggagcatttcccacattcaagcatcggcagtgacgcttggcagcgtcgagtggatcatcagcactgcggggccttcctgccaggttgctctggtctctcccactgcccttttagactgtctctacctct i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3345468 154 - 10304083 tggacacccagcagctgaggctgcgggagcatttcccacattcaagcatcggcagtgacgcttggcagcgtcgagtggatcatcagcactgcggggccttcctgccaggttgctctggtctctcccactgcccttttagacggtctctacctct i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3427983 154 - 107702431 tggacacccagcagctgaggctgcgggaggatttcccacattcaagcatcggcagtgacgcttggcagcgtcgagtggatcatcagcactgcggggccttcctgccaggttgctctggtctctcccactgcccttttagactgtctctacctct i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 963056 154 + 1565135 tggacacccagcagctgaggctgcgggagaatttcccacattcaagcatcagcagtgacgcttggcagcgtcgagtggatcatcagcactgcggggccttcctgccaggttgctctggtctctcccactgcccttttagactgtctctacctct i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3334266 154 - 13651311 TGGACACCCAGCAGCTGAGGCTGCGGGAGGATTTCTCACATTCAAGCATCTGCAGTGACGCTTGGCAGCGTCGAGTGGATCATCAGCACTGCAGGGCCTTCCTGCCAGGTTGCTCTGGTCTCTCCCACTGCCCTTTTAGACTGTCTCTACCTCT i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e saiBol1.JH378218 3081198 0 - 7082604 C e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e cebCap1.NW_016107454v1 566964 0 + 5243153 C e aotNan1.NW_018507213v1 1900238 0 - 1938448 C e calJac3.chr14 3426943 6 - 108792865 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=53458.000000 s hg38.chr2_KI270769v1_alt 27191 10 + 120616 CTCACGCCTC s gorGor5.CYUI01015435v1 225265 10 + 637652 CTCACGCCTC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3283206 10 + 108979918 CTCAAGCCTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4996277 10 - 111193037 CTCAAGCCTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3391011 10 + 3644372 ctcaagcctc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3345622 10 - 10304083 ctcaagcctc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3428137 10 - 107702431 ctcaagcctc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 963210 10 + 1565135 ctcaagcctc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3334420 10 - 13651311 CTCAAGCCTC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3081198 10 - 7082604 CTCAAGCCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 566964 10 + 5243153 CTCAAGCCTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1900238 10 - 1938448 CTCAAGCCTG i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e calJac3.chr14 3426943 6 - 108792865 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=963357.000000 s hg38.chr2_KI270769v1_alt 27201 158 + 120616 CCACCCCTCCCCTTCCTCCTCACTTTTAAAGACGAGTGACCTTCCCCCTGCTTTGGAGCCAAAACAGAATTCTGGTAGCACCTCACGTCCCTAGTCCTGGACACACTCCTGCTGAGGTCAGCGGGCAGACTGTCCTCCCCGCAGATGGCCCTCGGCCC s gorGor5.CYUI01015435v1 225275 158 + 637652 CCACCCCTCCCCTTCCTCCTCACTTTTAAAGACGAGTGACCTTCCCCCTGCTTTGGAGCCAAAACAGAGTTCTGGTAGCACCTCATGTCCCTAGTCCCGGACACACTCCTGCTGAGGTCAGCGGGCAGACTGTCCTCCCCACAGATGGCCCTCGGCCC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3283216 155 + 108979918 CCACCCCTCCCCTTCCTCCTCACTTTTAAAAATGAGTGACGTTCCCCCAGCTTTGGAGCCAAAACAGAGTTCTGGTAGCACCTCACGTCCCTAGTCCTGGACACACACCTGCTGAGGTCAGCGGGCAGACTG---TCACCGCTGACGGCCCTCGGCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4996287 155 - 111193037 CCACCCCTCCCCTTCCTCCTCACTTTTAAAAATGAGTGACGTTCCCCCAGCTTTGGAGCCAAAACAGAGTTCTGGTAGCACCTCACGTCCCTAGTCCTGGACACACACCTGCTGAGGTCAGCGGGCAGACTG---TCGCCGCCGACGGCCCTCGGCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3391021 155 + 3644372 ccacccctccccttcctcctcacttttaAAAATGAGTGACGTTCCCCCAGTTCTGGAGCCAAAACAGAGTTCTGGTAGCACCTCACGTCCCTAGTCCTGGACACACACCTGCTGAGGTCAGCGGGCAGACTG---TTGCCGCCGACGGCCCTCGGCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3345632 155 - 10304083 ccacccctccccttcctcctcacttttaaagatgagtgacgttCCCCCAGCTTTGGAGCCAAAACAGAGTTCTGGTAGCACCTCACGTCCCTAGTCCTGGACACACACCTGCTGAGGTCGGCGGGCAGACTG---TCCCCGCCGACGGCCCTCGGCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3428147 158 - 107702431 ccacccctccccttcctcctcacttttaaagatgagtgacgttCCCCCAGCTTTGGAGCCAAAACAGAGTTCTGGTAGCACCTCACGTCCCTAGTCCTGGACACACACCTGCTGAGGTCAGCGGGCAGACTGTCCTCCCCGCCAACGGCCCTCGGCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 963220 155 + 1565135 ccacccctccccttcctcctcacttttaAAAATGAGTGACGTTCCCCCAGCTTTGGAGCCAAAACAGAGTTCTGGTAGCATCTCACGTCCCTAATCCTGGACACACACCTGCTGAGGTCGGCGGGCAGACTG---TCCCCGCCGACGGCCCTCGGCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3334430 158 - 13651311 CCACCCCTCCCCTTCCTCCTCACTTTTAAAGATGAGTGACGTTCCCCCAGCTTTGGAGCCAAAACAGAGTTCTGGTAGCATCTCACGTTCCTAGTCCTGGACACACACCTGCTGAGGTCGGTGGGCAGACTGTCCTCCCCGCCGATAGCCCTCGGCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3426949 157 - 108792865 CCACCCCTCCCCTT-CTCCTCACTTTTAACAATGAGTGACTTTCCCCCAGCTTAGGAGCGAAAACAGAGTTCTGGTAGCACCTCATGGCCCTGGCCCTGGACACACACCTGCTGAGGTCGGTGGGCAGACTGTCCTCCCCGCAGATGGCCCTTGGCCC i calJac3.chr14 I 6 C 0 s saiBol1.JH378218 3081208 146 - 7082604 CCACCCCTCCCCTTCCTCCTCACTTTT---AATGAGTGACTTTCTCCCAGCTTAGGAGCAAAACCGG---------AGCACCTCATGGCCCTGGTCCTGGACACACACCTGCTGAGGTCGGTGGGCAGACTGTCCTCCCGGCAGACGGCCCTCGGCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 566974 157 + 5243153 CCACCCCTCCCCTTCCTCCTCACTTTTAACGATGAGTGGCTTTCCCCCAGCTTAGGATCAAAAACAGAATTCTGGTAGCACCTCATAGCCCTGGTCCTGGACACACACCTGCCGAGGTCAGT-GGCAGACTGTCCTCCCCGCAGATGGCCCTTGGCCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1900248 155 - 1938448 CCACCCCTCCCCTTCCTCCTCACTTTTAACAATGAGTGACTTTCCCCCAGCTTAGGAGCAAAAACAGAGTTCTGGTAGCACCTCATGGCCCTGGTCCTGGACACACACCTGCTGAGGTCGGTGGGCAGACTGTCCTCCCTGCAGATGGCCTTTGG--- i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2016973 1106 + 64289059 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=1138302.000000 s hg38.chr2_KI270769v1_alt 27359 205 + 120616 ACATGCCCTGACGCCTGGAACCCTGAGCCATGGGTCATCCTTTCTTCCTAATGTGTCATCAGCCCTTCTCCAGCTACAGCCTCCTCCTCTGCGTTTTTACACACTCAAGTACTTGGTTAAACACAGACACTGAGGGTCTCACCTTCTGCGGCCGCTGTCTGCCTTTCCTCCCCTGACAGTCTGGTAGTGCTGACTTCCCTAGAGG s gorGor5.CYUI01015435v1 225433 205 + 637652 ACATGCCCTGACGCCTGGAACCTTGAGCCATGGGTCATCCTGTCTTCCTAATGTGTAATCAGCCCTTCTCCAGCTACAGCCTCCTCCTCTGCGTTTTTACACACTCAAGTACTTGGTTAAACACAGACAGTGAGTGTCTCACCTTCTGTGGCCACTGTCTGCCTTTCCTCCCCTGACAGTCTGGTAGTGCTGACTTCCCTAGAGG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3283371 205 + 108979918 GCATGCCCTGACGCCTGGAACCTTGAGCCATGGGTCATCCTTTCTTCCTAATGTGTAATCAGCTGTTCTCCAGCTACAGCCTCCTCCGCTGTGTTTTCACACACTCAAGCACTTGCTTAAACACAGACACGGAGTGTCTCACCTTCTGCGGCCGCTGTTGGCCTTTCCTCCGCTGGCACCCTGGTCATGCCGACTTCCCTGGAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4996442 205 - 111193037 GCATGCCCTGACGCCTGGAACCTTGAGCCATGGGTCATCCTTTCTTCCTAATGTGTAATCAGCTGTTCTCCAGCTACAGCCTCCTCCGCTGTGTTTTCACACACTCAAGCACTTGCTTAAACACAGACACGGAGTGTCTCACCTTCTGCGGCCGCTGTTGGCCTTTCCTCCGCTGGCACCCTGGTCATGCCGACTTCCCTGGAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3391176 205 + 3644372 GCATGCCCTGACGCCTGGAACCTTGAGCCATGGGTCATCCTTTCTTCCTAACGTGTAATCAGCTGTTCTCCAGCTACAGCCTCCTCCGCTGTGTTTTCACACACTCAAGCACTTGCTTAAACACAGACACGGAGTGTCTCACCTTCTGCGGCCGCTGTTGGCCTTTCCTCCGCTGGCACCCTGGTCATGCCGACTTCCCTGGAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3345787 203 - 10304083 GCATGCCCTGACGCCTGGAACCTTGAGCCATGGGTCATCCTTTCTTCCTAATGTGTAATCAGCTGTTCTCCAGCTACAGCCTCCTCCGCTGTGTTTT--CACACTCAAGCACTTGCTTAAACACAGACACGGAGTGTCTCACCTTCTGCGGCCGCTGTCGCCCTTTCCTCCGCTGGCACCCTGGTCATGCCGACGTCCCTGGAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3428305 203 - 107702431 GCATGCCCTGACGCCTGGAACCTTGAGCCATGGGTCATCCTTTCTTCCTAATGTGTAATCATCTGTTCTCCAGCCACAGCCTCCTCCGC--TGTTTTCACACACCCAAGCACTTGCTTAAACACAGACACAGAGTGTCTCACCATCTGCGGCCGCTGTCAGCCTTTCCTCCCCTGGCACCCTGGTCATGCCGACTTCCCTGGAGG i chlSab2.chr14 C 0 I 196 s manLeu1.NW_012104432v1 963375 204 + 1565135 ACATGCCCTGACGCCTGGAACCTTGAGCCATGGGTCATCCTTTCTTCCTAATGTGTAATCAGCTGTTCTCCAGCTACAGCCTCCTCCGCTGTGTTTTCACACACTCAAGCACTTGCTTAAACACAGACACGGAGTGTCTCACCTTC-GCGGCCGCTGTTGGCCTTTCCTCCACTGGCACCCTGGTCATGCCGACTTCCCTGGAGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3334588 205 - 13651311 ACATGCCCTGACGCCTGGAACCTCGAGCCATGGTTCATCCTTTCTTCCTAATGTGTCATCAGCTGTTCTCCAGCTACAGCCTCCTCCTCTGTGTTTTTACACACTCAAGCACTTGCTTAAACACAGACACGGAGTGTCTCACCTTCTGCGGCCGCTGTCGGCCTTTCCTCCCCTGGCACCCTGGTCATGCCGACTTCCCTAGAGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3427106 196 - 108792865 GCATGCCCTCATGCCAGGAACCTGGAGCCAGGGGTCATCCTTCCTTCCTCATGTGTGATCAGCCTTTCTCCAGCTACAGCCTCCCCATCTGTGTTTT-ACACACTCAGGTGCTTGGCTAAACACAGACAC----TGTCTCACGTTCTAT-GCAGCCGCCTGCCTCTCCTCCC--GACAGCCTGGTGGTGCTGACCTCCCTAGAG- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3081354 200 - 7082604 GCGTTCCCTCATGCCAGGAACCTGGAGCCAGGGGTCATCCTTCCTTCCTCATGTGTGGTCAGCCTTTCTCCAGCTGCAGCCTCCCCATCTGTGTTTT-ACACACTCAGGTGCTTGGCTAAACACAGACACTGAGTGTCTCACCTTCTGC-ACGGCCGCCTGCCTCTCCTCCC--GACAGCCTGGTAGTGCTGACCTCCCTAGAG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 567131 196 + 5243153 TCGTGCCCTCATGCCAGGAACCTGGAGCCAGGGGTCATCCTTCCTTCCTCATGTGTGATCAGCCTTTCTCCAGCTGCAGCCTCCCCATCTGTGTTTC-ACACACTCAGGTGCTTGGCTCAACACAGACAC----TGTCTCACCTTCTGC-GCGGCCACCTGCCTCTCCTCCC--GACAGCCTGGTAGTGCTGACCTCCCTAGAG- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1900403 188 - 1938448 -----CCCTCATGCCAGGAACCTGGAGCCAGGGGTCATCCTTCCTTCCTCGTGTGTGATCAGCCTTTCTCCAGCTACAGCCTCCCCATCTGTGTTTT-ACACACTCAGGTGCTTGGCTAAACACAGACAC----TGCCTCAC---CTGC-GCAGCTGCCTGCCTCTCCTCCC--GACAGCCTGGTAGTGCTGACCTCCGTAGAG- i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2018079 187 + 64289059 ACCTTCCCTGACTCCCGGGACCTCGTGCTGTCGATGATCCGTTCTTTCCAGTGTGCCGTCAGCCTTTCCCCAACGAGAGCCTTTTC--TTGCTTTCTCCCACACTGGAGCGTTGGTTTAAGCAGGCACACAACAA---------------GCACCTGTTCTCTCCCCCTCCTCCACCACCCTCCTTAGCTCAGCGACTCAGACG- i canFam3.chr17 I 1106 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=2599906.000000 s hg38.chr2_KI270769v1_alt 27564 452 + 120616 TTCCTATAGCTGCCCATCTCTCTGCTTCCCTATCCTTAGTTTCCACAGA----tttt-------------------------------------------------ttttttttttttt------------gtaagacagggtcttactc-tgtcaccgggctggagtgcagtgtcatgacttcaggtcactgcaacctcagcctcctgggctcagatgatcctcccaccacagcctcccaagtagctgggactacagatgcatgccaccacacacagctaatttttgttttatagagac-agggtttcaccatgttgcccttcttgagctcctg---agctcaagcagtctgcc-tgactcagcctgccagtgtgctaggattacaggtgtgagccaccgcgcccggccTTTCCCCAAATCTTATTCTC----GTCTGATTCCAGTCCAACCAGCTCTCAACAAAGCTGCTAATGGCTTTGTCTGGAACCTGCCGGATGTTGAGTTCCTCTGCAGGCTGCCTCCTG s gorGor5.CYUI01015435v1 225638 464 + 637652 TTCCTATAGCTGCCCATCTCTCTGCTTCTCTCTCCTTAGTTTCCACAGA----tttt-------------------------------------------------ttttttttttttttttttttttttcgtaagacagggtcttactc-tgtcaccgggctggagtgcagtgtcatgacttcaggtcactgcaacctcagcctcctgggctcagatgatcctcccaccacagcctcccaagtagctgggactacagatgcatgccaccacacacagctaatttttgttttatagagac-agggtttcaccatgttgcccttcttgagctcctg---agctcaagcactctgcc-tgactcagcctgccagtgtgctaggattacaggtgtgagccaccgcgcccggccTTTCCCCAAATCTTATTCTC----GTCTGATTCCAGTCCAACCAGCTCTCAACAAAGCTGCTAATGGCTTTGTCTGGAACCTGCCGGATGTTGAGTTCCTCTGCAGGCTGCCTCCTG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3283576 451 + 108979918 TTCCTACAGCTGCCCACCTCTCTGCTTCCCTCTCCTTAGTTTCCACAGA----tttg--------------------------------------------------tttttttttttt-------------taagacagggtctcagtcttgtcgccggactggagtacagtgtcatgatttcaggtcactgcaatctcagcctcctgggctcagatgatccttccaccgcagcctcccaggtagctgggactacagatgcatgccaccacacgcagctcatttttgttttatagagac-agggtttcaccatgttgcccttcgtgagctccta---agctcaagcaatctgcc-tgactcagcctgccagtgtgctaggattacaggcgtgagccaccacgcccggccTTTCCACAAATCTTATTCTC----ATCTGATTCCCGTCCAACCAGCTCTCAACAAAGCTGCTAATGGCTTTATCTGGAACCTGCCGGATGTTGAGTTCCTCTGCAGGCTGCCTCCTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4996647 452 - 111193037 TTCCTACAGCTGCCCACCTCTCTGCTTCCCTCTCCTTAGTTTCCACAGA----tttg-------------------------------------------------ttttttttttttt-------------aaagacagggtctcagtcttgtcgccggactggagtacagtgtcatgatttcaggtcactgcaatcttagcctcctgggctcagatgatccttccaccgcagcctcccaggtagctgggactacagatgcatgccaccacacgcagctcatttttgttttatagagac-agggtttcaccatgttgcccttcgtgagctccta---agctcaagcaatctgcc-tgactcagcctgccagtgtgctaggattacaggcgtgagccaccacgcccggccTTTCCACAAATCTTATTCTC----ATCTGATTCCCGTCCAACCAGCTCTCAACAAAGCTGCTAATGGCTTTATCTGGAACCTGCCGGATGTTGAGTTCCTCTGCAGGCTGCCTCCTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3391381 455 + 3644372 TTCCTACAGCTGCCCACCTCTCTGCTTCCCTCTCCTTAGTTTCCACAGA----tttg----------------------------------------------tttttttttttttttt-------------taagacagggtctcagtcttgtcgccggactggagtacagtgtcatgatttcaggtcactgcaatctcagcctcctgggctcagatgatccttccaccgcagcctcccaggtagctgggactacagatgcatgccaccacacacagctcatttttgttttatagagac-agggtttcaccatgttgcccttcgtgagctccta---agctcaagcaatctgcc-tgactcagcctgccagtgtgctaggattacaggcgtgagccaccacgcccggccTTTCCACAAATCTTATTCTC----ATCTGATTCCCGTCCAACCAGCTCTCAACAAAGCTGCTAATGGCTTTATCTGGAACCTGCCGGATGTTGAGTTCCTCTGCAGGCTGCCTCCTG i macNem1.NW_012011978v1 C 0 I 33 s cerAty1.NW_012000820v1 3345990 501 - 10304083 TTCCTACAGCTGCCCACCTCTCTGCTTCCCTCTCCTTAGTTTCCACAGA----TTCCTACAGCTGCCCACCTCTCTGCTTCCCTCTCCTTAGTTTCCACAGAtttgttttttttttttt-------------taagacagggtctcagtcttgtcgccggactggagtacagtgtcatgatttcaggtcactgcaatctcagcctcctgggctcagatgatccttccaccgcagcctcccaggtagctgggactacagatacatgccaccacacgcagctcatttttgttttatagagac-agggtttcaccatgttgcccttcttgagctccta---agctcaagcaatctgcc-tgactcaccctgccagtgtgctaggattacaggcgtgagccaccacgcccggccTTTCCACAAATCTTATTCTC----ATCTGATTCCAGTCCAACCATCTCTCAACAAAGCTGCTAATGGCTTTATCTGGAACCTGCCGGATGTTGAGTTCCTCTGCGGGCTGCCTCCTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3428704 455 - 107702431 TTCCTACAGCTGCCCACCTCTCTGCTTCCCTCTCCTTAGTTTCCACAGAt-tttttt-------------------------------------------------ttttttttttttt-------------taagacaggttctcagtcttgtcgccggactggagtacagtgtcatgatttcaggtcactgcagtctcagcctcctgggctcagatgatccttccaccgcagcctcccaggtagctgggactacagatgcatgccaccacacacagctcgtttttgttttatagagac-agggtttcaccacgttgccctttgtgagctccta---agctcaagcaatctgcc-tgactcagcctgccagtgtgctaggattacaggcgtgagccaccacgcccggccTTTCCACAAATCTTATTCTC----GTCTGATTCCAATCCAGCCAGCTCTCAACAAAGCTGCTAATGGCTTTACCTGGAACCTGCCGGATGTTGAGTTCCTCTGCAGGCTGCCTCCTG i chlSab2.chr14 I 196 C 0 s manLeu1.NW_012104432v1 963579 452 + 1565135 TTCCTACAGCTGCCCACCTCTCTGCTTCCCTCTCCTTAGTTTCCACAGA----tttg-------------------------------------------------ttttttttttttt-------------taagacagggtctcagtcttgtcgccggactggagtacagtgtcatgatttcaggtcactgcaatctcagcctcctgggctcagatgatccttccaccgcagcctcccaggtagctgggactacagatgcatgccaccacacacagctcatttttgttttatagagac-agggtttcaccatgttgcccttcttgagctccta---agctcaaacaatctgcc-tgactcagcctgccagtgtgctaggattacaggcgtgagccaccacgcccggccTTTCCACAAATCTTATTCTC----ATCTGATTCCAGTCCAACCAGCTCTCAACAAAGCTGCTAATGGCTTTATCTGGAACCTGCCGGATGTTGAGTTCCTCTGCGGGCTGCCTCCTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3334793 456 - 13651311 TTCCTACAGCTGCCCACCTCTCTGCTTCCCTCTCCTTAGTTTCCACAGATAttttta-------------------------------------------------ttattgttttttt-------------taagacagggtctcagtcttgtcgctggactggagtacagtgtcatgatttcaggtcactgcaatctcagcctcctgggctcagatgatccttccaccgcagcctcccaggtagctgggactacagatgcatgccaccacacgcagctcatttttgttttatagagac-agggtttcaccatgttgcccttcttgagctccta---agctcaagcagtctgcc-tgactcagcctgccagtgtgctaggattacaggcgtgagccaccacgcccggccTTTCCACAAATCTTATTCTC----GTCTGATTCCGGTCCAACCAGCTCTCAACAAAGCTGCTAATGGCTTTATCTGGAACCTGCCGGATGTTGAGTTCCTCTGTGGGCTGCCTCCTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3427302 423 - 108792865 TGCCTGCGGCTGCCCATCTCTCTGCTTCCCTCTCCTCAGTTTCCACAGt----cttt-------------------------------------------------tt-------------------------aagacagggtctcactc-tgacagtgggctggagtacagtgtcatgatttcacgtcactgcaacctcagtctcc-gggctcagacgatcctcccactgcagcctcccaagtagctgggactacagacgcgtgc-------------tgatttttattctgtggagatgggggtttcaccacattgctcttctcaagttcctg---aa--caagcaatctgcc-cgactcggcctcccaatgtgctaggattacaggcgtgagccacagtgcctggccTTTCCACAAATATTACTTTC----ATCTGACTCCAGTCCGGCCAGCTCTTAACAAAGCTGCTAATAGCTTTTCCTGGAACCTGGCAGGTGTTGAGTTCCCCTGCA-GCTGCCTCCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3081554 437 - 7082604 TCCCTGCGGCTGCCCGTCTCTC-GCTTCCCTCTCTTCAGTTTCCACAGt----tctt-------------------------------------------------tt---------tt-------------aaagacagggtctcactc-tgatagtgggctggagtgcagtgtcatgatttcaggtcactgcagcctcagcctcc-aggctcagacaatcctcccactgcagcctcccaagtagctggtactacagacgcgtgcgactaaacacagattatttttattctgtagagat-ggggtttcaccatattgcccttctcaggttcctg---agtccaagcaatctgcc-tgacttggcctcccaatgtgctaggattacaggtgtgagcc-CAGTGCC-AGCCTTTCCACAAATCTTACTTTC----ATCTGACTTCAGTGCAGCCAGCTCTCAGTAAAGCTGCTAATAGCTTTGCATGGAACCTGGCAAGTGTTGAGTTCCCCTGCA-GCTGCCTCCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 567327 441 + 5243153 TCCCTGTGGCTGCCCGTCTCTCTGCTTCCCTCTCCTCAGTTTCCACAGt----tttt-------------------------------------------------tt----ttttttt-------------taagacagggtctcactc-tgacagtgggctggagtgtagtgtcatgatttcaggtcactgcaacctcagcctcc-gggctcagacgatcctcccactgcagcctcccaagtagctgggactacagacgcgtgccactaaacacagctgatttttattccgtagagat-ggggtttcaccacattgctcttctcaagttcctg---agcccaagcaatctgccttgactcggcctcccaatgtgctaggattataggcatgagccacagtgcccggccTTTCCACAAATCTTACTTTC----ATCTGACTCCAGT-----CAGCTCTTAGCAAAGCTGCTAATAGCTTTGCATGGAACCTGGCAGGCGTTGAGTTCCCCTGCA-GCTGCCTCCTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1900591 442 - 1938448 TCCCTGCAGCTGCCTGTCTCTCTGCTTCCCTCTCCTCAGTTTCCACAGt----tttt-------------------------------------------------tt-------tttt-------------taagacagggtttcactc-tgacagtgggctggagtgcagtgtcattatttcaggtcactgcaacctcagcctcc-gggctcagacgatcctcccactgcagcctcccgagtagctgggactacagacacgtgccactaaacacagctgatttttattctgtagagat-ggggtttcaccatattgcccttatcaagttcctg---agcccaagcaatctgcc-tgactcggcttcccaatgtgctaggattacaggcgtgagccacagtgcccggccTTTCCACAAATCTTACTTTC----ATCTGACTCCAGTCCAGCCAGCTCTTAACAAAGCTGCTGATAGCTTTGCATGGAACCTGGCAGGTGTTGAGTTCCCCTGCA-GCTGCCTCCTG i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2018266 315 + 64289059 -TCCCAGGGTCACCTGGCTCATTGGTTCCC-CTCCTCGTCTTCCACCTG----TTTC-------------------------------------------------AT------------------------TCAGAC---TTCCCATCC-CGTCTCCCCAACGGA----------------CCAGCTCCCAGCAA----GGCCGCCAAGGATCTGCTGTCCCCTCC-------CATCCC--------------ACCCACACACTCCCTCAGGCGCACCTC-TTCACATGTCACACCCAC-ACAGTAGCTGCTTGTTTTTCTTTTC---CTCTTGAACAGCTCAAA-----GGCC-C--CTCAAC----------------ATTGTTGGCAT------------------------CCAATCTCAGATTCTGAGCTCTGAC-CCTTTCCAGCCTTCC--------------------CTGTCTCTGGGACTGGC-------------CCCCCGCC-ACCGCCATCTG i canFam3.chr17 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=65726.000000 s hg38.chr2_KI270769v1_alt 28016 13 + 120616 GAGACATCT---GCTc s gorGor5.CYUI01015435v1 226102 13 + 637652 GAGACATCT---GCTc i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3284027 13 + 108979918 GCAACGTCT---GCTC i rheMac8.chr13 C 0 I 20 s macFas5.chr13 4997099 13 - 111193037 GCAACGTCT---GCTC i macFas5.chr13 C 0 I 13 s cerAty1.NW_012000820v1 3346491 13 - 10304083 GCGACGTCT---GCTC i cerAty1.NW_012000820v1 C 0 I 13 s chlSab2.chr14 3429159 13 - 107702431 GCGACGTCT---GCTC i chlSab2.chr14 C 0 I 13 s manLeu1.NW_012104432v1 964031 13 + 1565135 GCGACGTCT---GCTC i manLeu1.NW_012104432v1 C 0 I 13 s colAng1.NW_012118821v1 3335249 13 - 13651311 GCGACGTCT---GCTC i colAng1.NW_012118821v1 C 0 I 13 s calJac3.chr14 3427725 13 - 108792865 GAGACGTCC---GCTC i calJac3.chr14 C 0 I 13 s saiBol1.JH378218 3081991 13 - 7082604 GAGACATCT---GCTC i saiBol1.JH378218 C 0 I 13 s cebCap1.NW_016107454v1 567768 13 + 5243153 GAGACGTGT---GCTC i cebCap1.NW_016107454v1 C 0 I 16 s aotNan1.NW_018507213v1 1901033 13 - 1938448 GAGACGTCT---GCTC i aotNan1.NW_018507213v1 C 0 I 16 s canFam3.chr17 2018581 16 + 64289059 GCTGCATGTCAGGCTC i canFam3.chr17 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e macNem1.NW_012011978v1 3391836 33 + 3644372 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=5472.000000 s hg38.chr2_KI270769v1_alt 28029 53 + 120616 ttgaacccaggaggcggagattgcagcaagtcgagatcgtgccactgcactcc s gorGor5.CYUI01015435v1 226115 53 + 637652 ttgaacccaggaggcggagattgcagcaagtcgagatcgtgccactgcactcc i gorGor5.CYUI01015435v1 C 0 C 0 s canFam3.chr17 2018597 26 + 64289059 TCGGATCC---------------------------ATCCTGCCACCGTGCTCT i canFam3.chr17 C 0 I 154 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e saiBol1.JH378218 3082004 13 - 7082604 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e cebCap1.NW_016107454v1 567781 16 + 5243153 I e aotNan1.NW_018507213v1 1901046 16 - 1938448 I e calJac3.chr14 3427738 13 - 108792865 I e colAng1.NW_012118821v1 3335262 13 - 13651311 I e manLeu1.NW_012104432v1 964044 13 + 1565135 I e chlSab2.chr14 3429172 13 - 107702431 I e cerAty1.NW_012000820v1 3346504 13 - 10304083 I e macNem1.NW_012011978v1 3391836 33 + 3644372 I e macFas5.chr13 4997112 13 - 111193037 I e rheMac8.chr13 3284040 20 + 108979918 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=1606.000000 s hg38.chr2_KI270769v1_alt 28082 18 + 120616 agcctgggcaatagagag s gorGor5.CYUI01015435v1 226168 18 + 637652 agcctgggcaatagaggg i gorGor5.CYUI01015435v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2018623 154 + 64289059 I e saiBol1.JH378218 3082004 13 - 7082604 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e cebCap1.NW_016107454v1 567781 16 + 5243153 I e aotNan1.NW_018507213v1 1901046 16 - 1938448 I e calJac3.chr14 3427738 13 - 108792865 I e colAng1.NW_012118821v1 3335262 13 - 13651311 I e manLeu1.NW_012104432v1 964044 13 + 1565135 I e chlSab2.chr14 3429172 13 - 107702431 I e cerAty1.NW_012000820v1 3346504 13 - 10304083 I e macNem1.NW_012011978v1 3391836 33 + 3644372 I e macFas5.chr13 4997112 13 - 111193037 I e rheMac8.chr13 3284040 20 + 108979918 I e nomLeu3.chr19 3021841 0 + 81552678 C e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=21195.000000 s hg38.chr2_KI270769v1_alt 28100 84 + 120616 tctgtctcaaaaaaaaaaaaaaaaaaa--TTGTCATAGTGGcaggcacagtggctcatgcctgtaatcccagcactctgggaggcc s gorGor5.CYUI01015435v1 226186 86 + 637652 tctgtctcaaaaaaaaaaaaaaaaaaaaaTTGTCATAGTGGcaggcacagtgactcatgcctgtaatcccagcactctgggaggcc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3021841 81 + 81552678 tctgtctcaaaaaaaaaaaaaaaa-----TTGTCATAGAGGcaggcacagtggctcatgcctgtaatcccagcactctgggaggcc i nomLeu3.chr19 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2018623 154 + 64289059 I e saiBol1.JH378218 3082004 13 - 7082604 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e cebCap1.NW_016107454v1 567781 16 + 5243153 I e aotNan1.NW_018507213v1 1901046 16 - 1938448 I e calJac3.chr14 3427738 13 - 108792865 I e colAng1.NW_012118821v1 3335262 13 - 13651311 I e manLeu1.NW_012104432v1 964044 13 + 1565135 I e chlSab2.chr14 3429172 13 - 107702431 I e cerAty1.NW_012000820v1 3346504 13 - 10304083 I e macNem1.NW_012011978v1 3391836 33 + 3644372 I e macFas5.chr13 4997112 13 - 111193037 I e rheMac8.chr13 3284040 20 + 108979918 I e panPan2.chr2A 3350688 0 + 114371477 C e panTro5.chr2A 3474686 5802 + 111504155 I a score=63606.000000 s hg38.chr2_KI270769v1_alt 28184 69 + 120616 gaggtgagtagatcacttcagcccagaagttcaagacaagcctgggcaacatgggaaaaccatatctct s panTro5.chr2A 3480488 69 + 111504155 gaggtgagtagatcacttcagcccagaagttcaagacaagcctgggcaacatgggaaaaccatgtctct i panTro5.chr2A I 5802 C 0 s panPan2.chr2A 3350688 69 + 114371477 caggtgagtagatcacttcagcccagaagttcaagacaagcctgggcaacatgggaaaaccatgtctct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 226272 69 + 637652 gaggtgagtagatcacttcagcccagaagttcaagacaagcctgggcaacatgggaaaaccatgtctct i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3021922 69 + 81552678 gaggtgagtagatcacttcagcccagaagttcaagacaagcctgggcaacatgggaaaaccctgtctct i nomLeu3.chr19 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2018623 154 + 64289059 I e saiBol1.JH378218 3082004 13 - 7082604 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e cebCap1.NW_016107454v1 567781 16 + 5243153 I e aotNan1.NW_018507213v1 1901046 16 - 1938448 I e calJac3.chr14 3427738 13 - 108792865 I e colAng1.NW_012118821v1 3335262 13 - 13651311 I e manLeu1.NW_012104432v1 964044 13 + 1565135 I e chlSab2.chr14 3429172 13 - 107702431 I e cerAty1.NW_012000820v1 3346504 13 - 10304083 I e macNem1.NW_012011978v1 3391836 33 + 3644372 I e macFas5.chr13 4997112 13 - 111193037 I e rheMac8.chr13 3284040 20 + 108979918 I a score=16181.000000 s hg38.chr2_KI270769v1_alt 28253 3 + 120616 aca s panTro5.chr2A 3480557 3 + 111504155 aca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3350757 3 + 114371477 aca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 226341 3 + 637652 aca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3021991 3 + 81552678 aca i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 4997125 3 - 111193037 ACA i macFas5.chr13 I 13 C 0 s cerAty1.NW_012000820v1 3346517 3 - 10304083 ACA i cerAty1.NW_012000820v1 I 13 C 0 s chlSab2.chr14 3429185 3 - 107702431 ACA i chlSab2.chr14 I 13 C 0 s manLeu1.NW_012104432v1 964057 3 + 1565135 ACA i manLeu1.NW_012104432v1 I 13 C 0 s colAng1.NW_012118821v1 3335275 3 - 13651311 ACA i colAng1.NW_012118821v1 I 13 C 0 s calJac3.chr14 3427751 3 - 108792865 ACG i calJac3.chr14 I 13 C 0 s saiBol1.JH378218 3082017 3 - 7082604 ACG i saiBol1.JH378218 I 13 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2018623 154 + 64289059 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e cebCap1.NW_016107454v1 567781 16 + 5243153 I e aotNan1.NW_018507213v1 1901046 16 - 1938448 I e macNem1.NW_012011978v1 3391836 33 + 3644372 I e rheMac8.chr13 3284040 20 + 108979918 I a score=47872.000000 s hg38.chr2_KI270769v1_alt 28256 8 + 120616 aaTACTCG s panTro5.chr2A 3480560 8 + 111504155 aaTACTCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3350760 8 + 114371477 aaTACTCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 226344 8 + 637652 aaTACTCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3021994 8 + 81552678 aaTACTCG i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 4997128 5 - 111193037 AATAC--- i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3346520 8 - 10304083 AATACTCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3429188 8 - 107702431 AATACTCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 964060 8 + 1565135 AATACTCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3335278 8 - 13651311 AATACTCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3427754 8 - 108792865 AATACACG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3082020 8 - 7082604 AATTCTCG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 567797 8 + 5243153 AATACTCG i cebCap1.NW_016107454v1 I 16 C 0 s aotNan1.NW_018507213v1 1901062 8 - 1938448 AATACTCA i aotNan1.NW_018507213v1 I 16 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2018623 154 + 64289059 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I e macNem1.NW_012011978v1 3391836 33 + 3644372 I e rheMac8.chr13 3284040 20 + 108979918 I a score=409584.000000 s hg38.chr2_KI270769v1_alt 28264 41 + 120616 CCTGCTTCTGCCACTCTGCACCatcaatataaataataact s panTro5.chr2A 3480568 41 + 111504155 CCTGCTTCTGCCACTCTGCACCatcaatataaataataact i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3350768 41 + 114371477 CCTGCTTCTGCCACTCTGCACCatcaatataaataataact i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 226352 41 + 637652 CCTGCTTCTGCCACTCTGCACCatcaatataaataataact i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3022002 41 + 81552678 CCTGCTTCTGCCACTCTGCACCatcaatataaataataact i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3284060 41 + 108979918 CCTGCTTCTGCCACTCTGCACCATCAATATAAATAATAACT i rheMac8.chr13 I 20 C 0 s macFas5.chr13 4997133 40 - 111193037 -CTGCTTCTGCCACTCTGCACCATCAATATAAATAATAACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3391869 41 + 3644372 CCTGCTTCTGCCACTCTGCACCATCAATATAAATAATAACT i macNem1.NW_012011978v1 I 33 C 0 s cerAty1.NW_012000820v1 3346528 41 - 10304083 CCTGCTTCTGCCACTCTGCACCATCAATATAAATAATAACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3429196 41 - 107702431 CCTGCTTCTGCCACTCTGCACCATCAGTATAAATAATAACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 964068 41 + 1565135 CCTGCTTCTGCCACTCTGCACCATCAATATAAATAATAACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3335286 41 - 13651311 CCTGCTTCTGCCACTCTGCACCATCAGTATAAATGATAACC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3427762 41 - 108792865 TCTGTTTCTGCCACTCTGCACCAGCGATTTAAGTAATGACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3082028 41 - 7082604 TCTGCCTCTGCCACTCTGCACCAGCGATACAAGTAATGATT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 567805 41 + 5243153 TCTGCTTCTGCCGCTCTGCACCAGCGATATAAGTAATGACT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1901070 41 - 1938448 TCTGCTTCTGCCACTCTGCACCAGCAACATAAGTAATGACT i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2018623 154 + 64289059 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I e otoGar3.GL873658 2509652 143 + 5252280 I a score=22800.000000 s hg38.chr2_KI270769v1_alt 28305 2 + 120616 aa s panTro5.chr2A 3480609 2 + 111504155 aa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3350809 2 + 114371477 aa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 226393 2 + 637652 aa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3022043 2 + 81552678 aa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3284101 2 + 108979918 AA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4997173 2 - 111193037 AA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3391910 2 + 3644372 AA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3346569 2 - 10304083 AA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3429237 2 - 107702431 AA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 964109 2 + 1565135 AA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3335327 2 - 13651311 GA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3427803 2 - 108792865 AA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3082069 2 - 7082604 AA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 567846 2 + 5243153 AA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1901111 2 - 1938448 AA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2509795 2 + 5252280 AA i otoGar3.GL873658 I 143 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2018623 154 + 64289059 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I a score=110499.000000 s hg38.chr2_KI270769v1_alt 28307 12 + 120616 ttcacaataatc s panTro5.chr2A 3480611 12 + 111504155 ttcacaataatc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3350811 12 + 114371477 ttcacaataatc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 226395 12 + 637652 ttcacaataatc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3022045 12 + 81552678 ttcacaataatc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3284103 12 + 108979918 TTCACGGTAATC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4997175 12 - 111193037 TTCACGGTAATC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3391912 12 + 3644372 TTCACAGTAATC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3346571 12 - 10304083 TTCACAGTAATC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3429239 12 - 107702431 TTCACAGTAATC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 964111 12 + 1565135 TTCACAGTAATC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3335329 12 - 13651311 TTCACAGTAATC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3427805 12 - 108792865 TTCACCATCATC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3082071 12 - 7082604 TTTACCGTCATC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 567848 12 + 5243153 TTCACCGTCATC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1901113 12 - 1938448 TTCACCGTCATC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2509797 12 + 5252280 TTCAGTGTAATT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2018777 12 + 64289059 TCTGTAAAATTC i canFam3.chr17 I 154 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e dasNov3.JH580157 525886 2380 + 2232271 I a score=243939.000000 s hg38.chr2_KI270769v1_alt 28319 24 + 120616 agt---catgaaag-aataaaATGGAAA s panTro5.chr2A 3480623 24 + 111504155 agt---catgaaag-aataaaATGGAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3350823 24 + 114371477 agt---catgaaag-aataaaATGGAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 226407 24 + 637652 agt---catgaaag-aataaaATGGAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3022057 24 + 81552678 agt---catgaaag-aataaaATGGAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3284115 24 + 108979918 AGT---CATGAAAG-AATGAAATGAAAA i rheMac8.chr13 C 0 I 2 s macFas5.chr13 4997187 24 - 111193037 AGT---CATGAAAG-AATGAAATGAAAA i macFas5.chr13 C 0 I 2 s macNem1.NW_012011978v1 3391924 24 + 3644372 AGT---CATGAAAG-AATGAAATGAAAA i macNem1.NW_012011978v1 C 0 I 2 s cerAty1.NW_012000820v1 3346583 24 - 10304083 AGT---CATGAAAG-AATGAAATGGAAA i cerAty1.NW_012000820v1 C 0 I 2 s chlSab2.chr14 3429251 24 - 107702431 AGT---CATGAAAG-AATGAAATGGAAA i chlSab2.chr14 C 0 I 2 s manLeu1.NW_012104432v1 964123 24 + 1565135 AGT---CATGAAAG-AATGAAATGGAAA i manLeu1.NW_012104432v1 C 0 I 2 s colAng1.NW_012118821v1 3335341 24 - 13651311 AGT---CATGAAAG-AATGAAACGGAAA i colAng1.NW_012118821v1 C 0 I 1 s calJac3.chr14 3427817 24 - 108792865 AGC---CATGAAGG-AACGAAACGGAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3082083 24 - 7082604 AGC---CACGAAAG-AACGAAACAGAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 567860 24 + 5243153 AGC---CATGAAAG-AACGAAACGGAAA i cebCap1.NW_016107454v1 C 0 I 75 s aotNan1.NW_018507213v1 1901125 24 - 1938448 AGC---CATGAAAG-AACGAAACGGAAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2509809 22 + 5252280 AATAAGTATGAGAA-AAAGAAAA----- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2018789 23 + 64289059 AAT---C-TAAATT-AATTATGTGAAAG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 528266 25 + 2232271 aat---tatgagagaaatgaaatgaaat i dasNov3.JH580157 I 2380 I 8 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I a score=35207.000000 s hg38.chr2_KI270769v1_alt 28343 3 + 120616 ACA s panTro5.chr2A 3480647 3 + 111504155 ACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3350847 3 + 114371477 ACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 226431 3 + 637652 ACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3022081 3 + 81552678 ACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3284141 3 + 108979918 ACA i rheMac8.chr13 I 2 C 0 s macFas5.chr13 4997213 3 - 111193037 ACA i macFas5.chr13 I 2 C 0 s macNem1.NW_012011978v1 3391950 3 + 3644372 ACA i macNem1.NW_012011978v1 I 2 C 0 s cerAty1.NW_012000820v1 3346609 3 - 10304083 ACA i cerAty1.NW_012000820v1 I 2 C 0 s chlSab2.chr14 3429277 3 - 107702431 ACA i chlSab2.chr14 I 2 C 0 s manLeu1.NW_012104432v1 964149 3 + 1565135 ACA i manLeu1.NW_012104432v1 I 2 C 0 s colAng1.NW_012118821v1 3335366 3 - 13651311 ACA i colAng1.NW_012118821v1 I 1 C 0 s calJac3.chr14 3427841 3 - 108792865 ACA i calJac3.chr14 C 0 I 2 s saiBol1.JH378218 3082107 3 - 7082604 GCA i saiBol1.JH378218 C 0 I 2 s aotNan1.NW_018507213v1 1901149 3 - 1938448 ACA i aotNan1.NW_018507213v1 C 0 I 71 s otoGar3.GL873658 2509831 3 + 5252280 ACT i otoGar3.GL873658 C 0 I 2 s canFam3.chr17 2018812 3 + 64289059 ACA i canFam3.chr17 C 0 I 2 s dasNov3.JH580157 528299 3 + 2232271 ata i dasNov3.JH580157 I 8 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e cebCap1.NW_016107454v1 567884 75 + 5243153 I a score=521416.000000 s hg38.chr2_KI270769v1_alt 28346 75 + 120616 TGCCAAATGCAGGCCC--CTGCTTTGTTATCACTGCAT--------GCCATACACATAAAGTTCTCTGTCAACGTGACTACAGGA s panTro5.chr2A 3480650 74 + 111504155 TGCCAAATGCAGGCCC--CTGCTTTGTTATCACTGCAT--------GCCATACACATAAAGTTCTCTGTCA-CGTGACTGCAGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3350850 74 + 114371477 TGCCAAATGCAGGCCC--CTGCTTTGTTATCACTGCAT--------GCCATACACATAAAGTTCTCTGTCA-CGTGACTGCAGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 226434 74 + 637652 TGCCAAATGCAGGCCC--CTGCTTTGTTATCACTGCAT--------GCCATACACATAAAGTTCTCTGTCA-CGTGACTGCAGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3022084 74 + 81552678 TGCCAAATGCAGGCCC--CTGCTTTGTTATCACTGCAT--------ACCGTACACATAAAGTTCTCTGTCT-CGTGACTGCAGGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3284144 74 + 108979918 TGCCAAATGCAGGCCC--CTGCTTTGTTATCACGGCAT--------GCTGTACACGTAAAGTTCTCTGTCA-CGTGACTGCAGGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4997216 74 - 111193037 TGCCAAATGCAGGCCC--CTGCTTTGTTATCACGGCAT--------GCTGTACACGTAAAGTTCTCTGTCA-CGTGACTGCAGGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3391953 74 + 3644372 TGCCAAATGCAGGCCC--CTGCTTTGTTATCACGGCAT--------GCTGTACACGTAAAGTTCTCTGTCA-CGTGACTGCAGGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3346612 74 - 10304083 TGCCAAATGCGAGCCC--CTGCTTTGTAATCACGGCAT--------GCCGTTCACGTAAAGTTCTCTGTCA-CGTGACTGCAGGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3429280 74 - 107702431 TGCCAAATGCAGTCCC--CTGCTTTGTCATCACGGCGT--------GCCGTACACGTAAAGTTCTCTGTCA-CGTGACTGCAGGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 964152 74 + 1565135 TGCCAAATGCAGGCCC--TTGCTTTGTTATCACGGCAT--------GCCGTACACGTAAAGTTCTCTGTCA-CGTGACTGCAGGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3335369 74 - 13651311 TGCCAAATGCAGGCCC--CTGCTTTGTTATCACAGCAT--------GCCGTACCCGTAAAGTTCCCTGTCA-CGTGACTGCAGGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3427846 69 - 108792865 TGGCAAATACCAGCCC-ACTGTTCCGTTGTCACAACAT--------GCAGTATACATAAAGCTC-CTGTCA------CTGCAGAG i calJac3.chr14 I 2 C 0 s saiBol1.JH378218 3082112 69 - 7082604 TGGCAAATACCAGCCC-ACTGTTCCGTTGTCACAGCAT--------ACAGTACACGTAAAGCTC-CTGCCG------CCGCAGAG i saiBol1.JH378218 I 2 C 0 s otoGar3.GL873658 2509836 71 + 5252280 GGCCCAGTACAAGCCC--CTCCTGTGCTGTCACTGCATTTGGGGCCACCGTCCTCAGATTGCCGTGTGCCA-CC----------- i otoGar3.GL873658 I 2 C 0 s canFam3.chr17 2018817 60 + 64289059 TACCAAGTACCAGCCC--AGCTTTTGTTATTACATCAG----------------------ATATCCTATCA-AGCTGCTGTAGAA i canFam3.chr17 I 2 C 0 s dasNov3.JH580157 528302 76 + 2232271 taccaaatacaagccccccttttttacaagtattagat--------tcagtaggcgtaaagtactgtttta-aattgctgtagaa i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e cebCap1.NW_016107454v1 567884 75 + 5243153 I e aotNan1.NW_018507213v1 1901152 71 - 1938448 I a score=3921377.000000 s hg38.chr2_KI270769v1_alt 28421 416 + 120616 GCATCTCCATTCCTGTGC-CTCG-TCCTCAGGTATCAGTCGCAAGCCACTCGCGGGCTGAAGTCAGCCCACAG--TCCTCCTTGAAGTCAACAGAAATGAACTACTGAGCCAC-GAGGGGCCTA------GACCTgggatccgccagcgttttctgtaaaagaccatagaataaacattgtagacttcct-ggccatacagtatctgt-ccagctcctcagctctgctgtGAATGCCCAGCTCTTCCATGGTAGCA--CAGAAC---CTTATCACCGTGCAGGTGCACA--CGAGGCTGGGCTCTGGGTTCCTGTGAGCTCTGCCTACCAACTCAGGCAGTAGG---GGGTGGGGGGCGTCCAAAGGATGTGCACAGATTGCCAGCACCAGGCCCAG-CTGCTGGAACA---TCCTCATAGCTTTACTCACATCTA-----CACGGAC s panTro5.chr2A 3480724 416 + 111504155 GCATCTCCATTCCTGTGC-CTCG-TCCTCAGGTATCAGTCGCAAGCCACTCACGGGCTGAAGTTAGCCCACAG--TCCTCCTTGAAGTCAACAGAAATGAACTACTGAGCCAC-GAGGGGCCTA------GACCTgggatccgccagcgttttctgtaaaagaccatagaataaacattgtagacttcct-ggccatacagtatctgt-ccagctcctcagctctgctgtGAATGCCCAGCTCTTCCATGGTAGCA--CAGAAC---CTTATCATCGTGCAGGTGCACA--CGAGGCTGGGCTCTGGGTTCCTGTGAGCTCTGCCTACCAACTCAGGCAGTAGG---GGGTGGGGGGCGTCCAAAGGATGTGCAAAGATTGCCAGCACCAGGCCCAG-CTGCTGGAACA---TCCTCATAGCTTTACTCACGTCTA-----CACGGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3350924 416 + 114371477 GCATCTCCATTCCTGTGC-CTCG-TCCTCAGGTATCAGTCGCAAGCCACTCACGGGCTGAAGTTAGCCCACAG--TCCTCCTTGAAGTCAACAGAAATGAACTACTGAGCCAC-GAGGGGCCTA------GACCTgggatccgccagcgttttctgtaaaagaccatagactaaacattgtagacttcct-ggccatacagtatctgt-ccagctcctcagctctgctgtGAATGCCCAGCTCTTCCATGGTAGCA--CAGAAC---CTTATCACCGTGCAGGTGCACA--CGAGGCTGGGCTCTGGGTTCCTGTGAGCTCTGCCTACCAACTCAGGCAGTAGG---GGGTGGGGGGCGTCCAAAGGATGTGCACAGATTGCCAGCACCAGGCCCAG-CTGCTGGAACA---TCCTTATAGCTTTACTGACGTCTA-----CACGGAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 226508 419 + 637652 GCATCTCCATTCCTGTGC-CTCG-TCCTCAGGTATCAGTCACAAGCCACTCGCGGGCTGAAGTCAGCCCACAG--TCCTCCTTGAAGTCAACAGAAATGAACTACTGAGCCAC-GAGGGGCCTA------GACCTgggatccgccagcattttctgtaaaagaccatagaataaacattgtagacttcct-ggccatacagtatctgt-ccagctcctcagctctgctgtGAATGCCCAGCTCTTCCATGGTAGCA--CAGAAC---CTTATCACCGTGCAGGTGCACA--CGAGGCTGGGCTCTGGGTTCCTGTGAGCTCTGCCTACCAACTCAGGCAGTAGG---GGGTGGGGGGCGTCCACAGGATGTGCACAGATTGCCAGCACCAGGCCCAG-CTGCTGGAACATCTTCCTCATAGCTTTACTCACATCTA-----CACGGAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3022158 415 + 81552678 GCATCTCCATTCCTGTGC-CTCG-TCCTCAGGTATCAGTCACAAGCCACTCGTGGGCTGAAGTCAGCCCACAG--TCCTCCTTGAAGTCAACAGAAATGAACTGCTGAGCCAC-GAGGGGCCTA------GACCTgggatccgccagcattttctgtaaaaggccatagaataaacattgtagacttcct-ggccatatggtatctgt-ccagctcctcagctctgctgtGAATGCCCAGCTCTTCCATGGTAGCA--CAGAAC---CTTATCACCATGCAGGTGCACA--CGA-GCTGGGCTCCGGGTTCCTGTGAGCTCTGCCCACCAACTCA-GCAGTA-G---GGGTGGGGGGCATCCACAGGATGTGCATAGATTGCCAGCACCAGGCCCGG-CTGCTGGAACATC-TCTTCATAGCTTTACTCACGTCTA-----CACGGAC i nomLeu3.chr19 C 0 M 100 s rheMac8.chr13 3284218 418 + 108979918 GCATCTCCATTCCTGTGC-CTCG-TCCTCGGGTATCAGTCACAAGCCACTTGCAGGCTAACGTCAGCCCACAG--GGGTCCTTGAAGTCGACAGAAATGAACTACTGAGCCA--GAGGGGCCGA------GACCTgggagccgccagcgttttctgtaaaaggccatggagtgaacgttgtagacttcct-ggccatgcggtatctgt-ccagctactgagctctgccgtGCATGCCTGGCTCTTCCGTGGTTGCA--CAGAAC---CTTCTCACCGTGCAGGTGCACA--GGAGGCGGGCCTCTGGGCTCCTGTGAGCTCCGCCCACCAACTCAGGCAGTAGG---GGGTGGGGGGCGTCCACAGGATGTGCACAGATTGCCAGCACCAGGCCCGG-CTACTAGAACATCCTCTTCATAGCTTTACTCATGTCTA-----CACAGAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4997290 418 - 111193037 GCATCTCCATTCCTGTGC-CTCG-TCCTCGGGTATCAGTCACAAGCCACTTGCAGGCTAACGTCAGCCCACAG--GGGTCCTTGAAGTCGACAGAAATGAACTACTGAGCCA--GAGGGGCCGA------GACCTgggagccgccagcgttttctgtaaaaggccatggagtgaacgttgtagacttcct-ggccatgcggtatctgt-ccagctactgagctctgccgCACATGCCTGGCTCTTCCGTGGTTGCA--CAGAAC---CTTCTCACCGTGCAGGTGCACA--GGAGGCGGGCCTCTGGGCTCCTGTGAGCTCCGCCCACCAACTCAGGCAGTAGG---GGGTGGGGGGCGTCCACAGGATGTGCACAGATTGCCAGCACCAGGCCCGG-CTACTGGAACATCCTCTTCATAGCTTTACTCACGTCTA-----CACAGAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3392027 418 + 3644372 GCATCTCCATTCCTGTGC-CTCG-TCCTCGGGTATCAGTCACAAGCCACTTGCAGGCTAACGTCAGCCCACAG--TGGTCCTTGAAGTCGACAGAAATGAACTACTGAGCCA--GAGGGGCCGA------GACCTgggagccgccagcgttttctgtaaaaggccatggagtgaacgttgtagacttcct-ggccatgcggtatctgt-ccagctactgagctctgccgCGCATGCCTGGCTCTTCCGTGGTTGCA--CAGAAC---CTTCTCACCGTGCAGGTGCACA--GGAGGCGGGCCTCTGGGCTCCTGTGAGCTCCGCCCACCAACTCAGGCAGTAGG---GGGTGGGGGGCGTCCACAGGATGTGCACAGATTGCCAGCACCAGGCCCGG-CTACTGGAACATCCTCTTCATAGCTTTACTCACGTCTA-----CACAGAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3346686 418 - 10304083 GCATCTCCATTCCTGTGC-CTCG-TCCTCGGGTATCAGTCACAAGCCACTTGCGGGCTAACGTCAGCCCACAG--TGGTCCTTGAAGTCGACAGAAATGAACTACTGAGCCA--GAGGGGCCGA------GACCTgggacccgccagcgttttctgtaaaaggccatggagtgaacgtcgtagacttcct-ggccatgcggtatctgt-ccagctactgagctctgccACGCATGCCTAGCTCTTCCGTGGTTGCA--CAGAAC---CTTCTCACCGTGCACGTGCACA--GGAGGCAGGCCTCTGGGCTCCTGTGAGCTCCGCCCACCAACTCAGGCAGTAGG---GGGTGGGGGGCGTCCACAGGATGTGCACAGATTGCCAGCACCAGGCCCGG-CTACTGGAACATCCTCTTCATAGCTTTACTCACATCTA-----CACAGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3429354 418 - 107702431 GCATCTCCGTTCCTGTGC-CTCG-TCCTCGGTTATCAGTCACAAGCCACTTGGGGGCTAACGTCAGCCCACAG--TGGTCCTTGAAGTCGACAGAAATGAACTACTGAGCCC--GAGGGGCCGA------GACCTgggacccgccagcgttttctgtaaaaggtcacggagtgaacgtcgtagacttcct-ggccatacggtatctgt-ccagctactgagctctgtcgtGCATGCCTAGCTCTTCCGTGGTAGCA--CAGAAC---CTTCTCACCGTGCAGGTGCACA--GGAGGCGGGCCTCTGGGCTCCTGTGAGCTCTGCCCACCAACTCAGGCAGTAGG---GGGTGGGGGGCGTCCACAGGATGTGCACAGATTGCCAGCACCAGGCCCAG-CTACCGGAACATCCTCTTCATAGCTTTACTCACATCTA-----CACAGAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 964226 418 + 1565135 GCATCTCCATTCCTGTGC-CTCG-TCCTCGGGTATCAGTCACAAGCCACTTGCGGGCTAACGTCAGCCCACAG--TGGTCCTTGAAGTCGACAGAAATGAACTACTGAGCCA--GAGGGGCCGA------GACCTgggacccgccagcgttttctgtaaaaggccatggagtgaacgtcgtagacttcct-ggccatgcggtatctgt-ccagctactgagctctgccACGCATGCCTAGCTCTTCCGTGGTTGCA--CAGAAC---CTTCTCACCGTGCAGGTGCACA--GGAGGCGGGCCTCTGGGCTCCTGTGAGCTCTGCCCACCAACTCAGGCAGTAGC---GGGTGGGGGGCGTCCACAGGATGTGCACAGATTGCCAGCACCAGGCCCGG-CTACTGGAACATCCTCTTCATAGCTTTACTCACATCTA-----CACAGAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3335443 419 - 13651311 GCCTCTCCATTCCTGTGC-CTCA-TCCTCGGGTATCAGTCACAAGCCACTTGCGGGCTAAAGTCAGTCCACAG--TCATCCTTGAAGTCGACAGAAATGAACTGCTGAGCCAC-GAGGGGCCTA------GACTTgggatctgccagcattttctgtaaaaggccatagagtgaacgttgtagacttcct-ggccatacggtatctgt-ccagctactgagctctgctgtGCATGCCTAGCTCTTCCGTGGTAGCA--CAGAAC---TTTCTCACCGTGCAGGTGCACA--GGAGGCGGGCCTCTGGGCTCCTGTGAGCTCTGCCCACCAACTCAGGCAGTAGG---GGGTGGGGGGCGTCCACAGGATGTGCACAGATTGCCAGCACCAGGCCCGG-CTACTGGAACATCCTCTTCATAGCTTTACTCACATCTA-----CACAGAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3427915 419 - 108792865 GCATCTCTGCTCCTGTGC-CTTG-TCCTCAGGTGTCAGTCACAAGCCACTCACAGGCTGAAGTCA-CTCACAG--TCCTCCTTGAAGTCAGAAGAAGTAAACTACTGACCCA--TGGGGGCCTG------GACCTGGGATCCACGAGCTTTCTCCTTCAAAGGCCACAGAGTGAACCTTGTAGACGTCCT-GGCCAGATGGCAGCTGCGGCACCTTCTCAGCTCTGCTGTGGATGCCCAGCTCTTCCATGGTAGCA--CCAAAC---CTTCCTGCCACGCACACACGCA--GGAGGCTGCGCTCTGCGCTCCTGTGAGCTCTGCCTGCCAACTCAGGCAGTTAGT--GGGGGCGGGGCGCCCACAGGATGTACACAGATTGCCAGCAGCAGGCCTGG-CTGCTGGAACGTCCTCCTGTTAGCTTTGCTCACATCTA-----CACAGGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3082181 420 - 7082604 GCGTCTCCGCTCCTGTGC-CTTG-TCCTCAGGTGCCAGTCACAAGCCACCTGTGGGCTGAAGTCA-CCCACAG--TCCTCCTTGAAGTCGGAAGAAGTAAACTACTGACCCA--CAAGGGCCTA------GACGTGGGATCCACAAGCATTCTCCGTCAAAGACCACAGAGTGAACCTTGTGGACTTCCT-GGCCACACGGCATCTGCGGCAGCTGCTCAGCTCTGCTGTGGATGCCCAGCTCTT-CGTGGTAGCA--CAAAAC---CTTCCCGCCATGCACATGCGCA--GCAGGCTGTGCTCTGGGCTCCCGTGAGCTCTGCTTGCCAACCCAGGCAGTTAGTGCGGGGGCGGGGCACCCACAGGATGTACACAGATTGCCAGCACCAGGCCTGG-CTGCTGGAACGTCCTCCTGATAGCTTTGCTCACATCTA-----CACAGGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 567959 427 + 5243153 GCATCTCCGCTCCTGTGC-CTTG-TCCTCGGGTGCCAGTCACAAGCCACTCGCAGGCTGAAGTCA-CCCACAG--TCCTCCTTGAAGTCGGAAGAAATAAACTACTGACCCA--CGAGGGCCTGGGATCAGACCTgggatccacaagcatcctctgtcaaaggccacaaagtgaaccttgtggacttcct-ggccatacggcacctgcggcagctgctcagctctgctgtGGATGCCCAGCTCTTCCACGGTAGCA--CAAAAC---CTTCCCGCCATGCACATGCGCA--GGAGGCTGCACTCTGGGCTCCTGTGAGCTCTGCTTGCCAACTCAGGCAGTGAGTGCGGGGGCGGGGCGCCCACAGGATGTACACAGACTGCCAGCACCAGACCTGG-CTGCTGGAACGTCCTCCTGAGAGCTTCGCTCACATCTA-----CACAGGC i cebCap1.NW_016107454v1 I 75 C 0 s aotNan1.NW_018507213v1 1901223 421 - 1938448 GCATCTCCGCTCCTGTGC-CTTG-TCCTCAGGTGCCAGTCACAAGCCACTCGCGGGCTGAAGTCA-CCCACAG--TCCTCCTTGAAGTCGGAAGAAATAAACTACTGACCCA--CGAGGGCCTA------GACCTGGGATCCACAAGCATTCTTCGTCAAAGGCCACAGAGTGAACCTTGTAGACTTCCT-GGCCTTACGGCATCTGCGGCAGCTGCTCAGCTCTGCTGTGGATGCCCAGCTCTTCCATGGCAGCA--CAAAAC---CTTCCCGCCACGCACATGCACA--GGAGGCTGCGCTCTGGGCTCCTGTGAGCTCTGCTTGCCAACTCAGGCAGTTAGTGGCGGGGCGGGGTGCCCACAAGATGTACACAGATTGCCAGCACCAGGCCTGG-CTGCTGGAACGTCCTCCTGATAGCTTTGCTCACATCTA-----CACAGGC i aotNan1.NW_018507213v1 I 71 C 0 s otoGar3.GL873658 2509907 380 + 5252280 ----------TTCTCTGC-TTCG-TCCTCACAGGCTTGTCCTGGACCACTT--AGGGCGACACCCGTCCACTG--TCCTCTTTGAAATAAGAGGAAATGAACTGCTGACCCTCTAAAATGTCTA------GACCTggagccggccagcattttcagtaaaaatc---acagtgaatattttaggccttct-gcccacaggggctctgtcacaactgctcagc-ctactgagaccgcaca---tgtccgtggtggca--c----c---ttcaacagtacacacataaacatgtgaggctgggctccagcaggctgtgtg-----------gacagaagtgggaag---gggtggacttggccctcaggctgtGCACAGACTGCCGGAGCCTGGCCTGG-GCA-TGGGATGCCCTCCTGACTACTCCACTCACATCT------------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2018877 328 + 64289059 --GTTTCTGCTTCTTGGC-CTTTCTCATTGAGGACCAGTCATAAGCCACT---GAGGTGACGTTG-TCCACAG--TCTCCCTGGATGTGG------------CACTGGCCAGG-TGGGGGACGG------CACATGGGAG--------------TGTCTCAGGCCCTGG----------------------GGCCACCCCGTCTTCGG-GCAGCTACTTAGCTCTGCTGTGACCGCCCACCTCCATCATGGGAGCA--TAGAACCAGCCTCAGACCGGGAA----------GGAAGCTCGGCCCCA--CAACTGTG---TCTGTGTGCAGACACGTGCT--------GGGCGGATCCAGCCTGTGGGCCACACACACACTGTCAGCTCCAGGCCCGG-ACG----------------ACGGCTCTCCTGACACAT------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 528378 369 + 2232271 gtttctcatcttgtatacttttg-ttatcatataccaatgacaaaccattcaaggaccgacatcagtccgcagaccccccctttaagtag------------------------taG-------------GACTttgg-----ctaattctttctgcaaagggccgaaaagtaaatattttagtttttgtgggccatgctgtctctgt-c--actgttcagctctgcca-------------ctgccacagaagcaatcataga---c-aattgctacacaaatgagcg--ggg---------ctatgttccattaaaacttcattttcaaaacagacagca-----cactggatttggcctgtaggccagacatagattgccaaaccctTgcctagactactggagtatcttcctaactgattgacttacatctattcccctcatcc i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I a score=473391.000000 s hg38.chr2_KI270769v1_alt 28837 45 + 120616 GCCTTAAGTTCA--CCCCATCAGTGCAGGGAGACAGGGGCCTTCAAA s panTro5.chr2A 3481140 45 + 111504155 GCCTTAAGTTCA--CCCCATCAGTGCAGGGAGACTGGGGCCTTCAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3351340 45 + 114371477 GCCTTAAGTTCA--CCCCATCAGTGCAGGGAGACTGGGGCCTTCAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 226927 45 + 637652 GCCTTAAGTTCA--CCCCATCAGTGCAGGGAGACTGGGGCCTTCAAA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3284636 45 + 108979918 GCCTTAAGTTCA--CCCCATCAGTGCAGGGAGACTGGGGCCTTCAGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4997708 45 - 111193037 GCCTTAAGTTCA--CCCCATCAGTGCAGGGAGACTGGGGCCTTCAGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3392445 45 + 3644372 GCCTTAAGTTCA--CCCCATCAGTGCAGGGAGACTGGGGCCTTCAGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3347104 45 - 10304083 GCCTTAAGTTCA--CCCCATCAGTGCAGGGAGACTGGGGCCTTCAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3429772 45 - 107702431 GCCTTAAGTTCA--CCCCATCAGTGCAGGGAGACTGGGGCCTTCAGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 964644 45 + 1565135 GCCTTAAGTTCA--CCCCATCAGTGCAGGGAGACTGGGGCCTTCAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3335862 45 - 13651311 GCCTTAAGTTCA--CCCCATCAGTGCAGGGAGACTGGGGCCTTCAGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3428334 45 - 108792865 GCCTTAAGTTCA--CCCCATCAGTGCAGGGAGACTGGTGCCTTCAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3082601 45 - 7082604 GCCCTGAGTTCA--CCCCGTCAGTGCAGGGAGACTGGAGCCTTCAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 568386 45 + 5243153 GCTCTAAGTTCA--CCCCATCAGTGCAGGGAGACTGGTGCCTTCAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1901644 45 - 1938448 GCCTTAAGTTCA--CTCCATCAGTGCAGGGAGACTGGTGCCTTCAAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2510287 43 + 5252280 -CCTTGAGTGCC--ACCCATCACTGCCGGGGCAC-AGTGCCTGCAGA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2019205 33 + 64289059 GCTTCATCCTCA--C------------GGGAGACTGATGTTTCTAGA i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 528747 47 + 2232271 cccttaaattaattccccctcactggaggtaaagtgatcttttcaaa i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2618144 4650 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 933235 2468 + 1238772 I e nomLeu3.chr19 3022573 100 + 81552678 M a score=436064.000000 s hg38.chr2_KI270769v1_alt 28882 57 + 120616 -TGT---GATGA-CACGACACTGCTGTGGCCTG-TGCTCTTGGAAG--CCTGCAAAGGCCAGCAC s panTro5.chr2A 3481185 57 + 111504155 -TGT---GATGA-CACGACACTGCTGTGGCCTG-TGCTCTTGGAAG--CCTGCAAAGGCCAGCAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3351385 57 + 114371477 -TGT---GATGA-CACGACACTGCTGTGGCCTG-TGCTCTTGGAAG--CCTGCAAAGGCCAGCAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 226972 57 + 637652 -TGT---GATGA-CACGACACTGCTGTGGCCTG-TGCTCTTGGAAG--CCTGCAAAGGCCAGCAC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3284681 41 + 108979918 ---------------------TGCTGTGGCCTG-TGCTCTTGGAAG--CCTGCAAAGGCCAGCAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4997753 41 - 111193037 ---------------------TGCTGTGGCCTG-TGCTCTTGGAAG--CCTGCAAAGGCCAGCAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3392490 41 + 3644372 ---------------------TGCTGTGGCCTG-TGCTCTTGGAAG--CCTGCAAAGGCCAGCAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3347149 41 - 10304083 ---------------------TGCTGTGGCCTG-TGCTCTTGGAAG--CCTGCAAAGGCCAGCAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3429817 41 - 107702431 ---------------------TGCTGTGGCCTG-TGTTCTTAGAAG--CCTGCAAAGGCCAGCAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 964689 41 + 1565135 ---------------------TGCTGTGGCCTG-TGCTCTTGGAAG--CCTGCAAAGGCCAGCAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3335907 41 - 13651311 ---------------------TGCTGTGGCCTG-TGCTCTTGGAAG--CCTGCAAAGGCCAGCAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3428379 60 - 108792865 -TGTGGTGATGA-CGCCACTCTGCCATGGCCCG-TGCTCTTGGAAG--CCTGCAAAGGCCAGCAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3082646 60 - 7082604 -TGTGGTGATGA-CCCAACACTGCTGTGGCCCA-TGCTCTTGGAAG--CCTGCAAAGGCCGGCAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 568431 60 + 5243153 -TGTGGCGATGA-CGCGACACTGCTGTGGCCGA-TGCTCTTGGCAG--CCTGCAAAGGCCAGCAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1901689 60 - 1938448 -TGTAGTGATGA-CCCGACACTGCTGTGGCCCG-TGCTCGTGGAAG--CCTGCAAAGGCCAGAAC i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2622794 57 - 159902609 ----TGTGGTGA-CGTGACACTGCTGTGGCCCG-TGGTCTCAGAAG--CCTGCAGAGGCCTGCAC i micMur3.chr8 I 4650 I 254 s proCoq1.NW_012151163v1 935703 57 + 1238772 ----TGTGGTGA-CGTGACACTGCTGTGGCCTG-CGCTCTCAGAAG--CCTGCAGAGGCCTGCAC i proCoq1.NW_012151163v1 I 2468 I 209 s otoGar3.GL873658 2510330 41 + 5252280 --------------------CTATTGTGA-CTG-TGCTCTCAGAAG--CCTGCAGAGGCCAGCAC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2019239 51 + 64289059 -------TATGAGCAGGACAC----GTTGCCTG-TGCTCTTGGAGC--CTCTGCAGGGACAGGAC i canFam3.chr17 I 1 I 2 s dasNov3.JH580157 528794 65 + 2232271 acataattatgaccatgtcacccttgcttcccattacttctagaagatctgacaaagacctgtgt i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91402425 3245 - 120129022 I e nomLeu3.chr19 3022573 100 + 81552678 M a score=483086.000000 s hg38.chr2_KI270769v1_alt 28939 64 + 120616 ACCCGACCCTCCTCTGCCTCACCTCCT--GTGCCACCCC--ATCCTCACCTGCTTCCCCAGCCTCTCC s panTro5.chr2A 3481242 64 + 111504155 ACCCGACCCTCCTCTGCCTCACCTCCT--GTGCCACCCC--ATCCTCACCTGCTTCCCCAGCCTCCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3351442 64 + 114371477 ACCCGACCCTCCTCTGCCTCACCTCCT--GTGCCACCCC--ATCCTCACCTGCTTCCCCAGCCTCCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 227029 64 + 637652 ACCCGACCCTCCTCTGCCTCACCTCCT--GTGCCACCCC--ATCCTCACCTGCTTCCCCAGCCTCCCC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3284722 63 + 108979918 ACCTGACCCTCCTCTGCCTCCCCTCCT--GTGCCA-CCC--GTCCTCACCTGCTTCCCCAGCCTACCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4997794 63 - 111193037 ACCTGACCCTCCTCTGCCTCCCCTCCT--GTGCCA-CCC--GTCCTCACCTGCTTCCCCAGCCTACCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3392531 63 + 3644372 ACCTGACCCTCCTCTGCCTCCCCTCCT--GTGCCA-CCC--GTCCTCACCTGCTTCCCCAGCCTACCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3347190 63 - 10304083 ACCTGACCCTCCTCTGCCTCCCCTCCT--GTGCCA-CCC--GTCCTCACCTGCTTCCCCAGCCTCCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3429858 63 - 107702431 ACCCAACCCTCCTCTGCCTCCCCTCCC--GTGCCA-CCC--GTCCTCACCTGCTTCCCCAGCCTCCCC i chlSab2.chr14 C 0 I 240 s manLeu1.NW_012104432v1 964730 63 + 1565135 ACCTGACCCTCCTCTGCCTCCCCTCCT--GTGCCA-CCC--GTCCTCACCTGCTTCCCCAGCCTCCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3335948 62 - 13651311 ACCTGACcctcctctgcct-ccctcct--gtgcca-ccc--atcctcacctgcttctccagcctcccc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3428439 66 - 108792865 CCCCGACCCGCCTCTGCCTCACCTCCCTGGTGCCACCCT--GTCCTCGCCCGCTTCTCCAACCTCGCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3082706 66 - 7082604 CCCCAACCCTCCTCTGCCTCACCTCCCTCGTGCCACCCC--GTCCCCGCCTGCTTCCCCAACCTCGCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 568491 66 + 5243153 TCCCGACCCTCCTCTGCCTCACCTCCCTCGTGCCAGCCC--GTCCTCGCCTGCTTCCCCAACCTCGCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1901749 66 - 1938448 CCCCAACCCTCCTCGGCCTCACCTCCCTCATGCCACCCC--GTCCTCGCCTGCTTCCCCAACCTCGCC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2510371 30 + 5252280 ---------AGCTCTGGCTCCCCTGCC---------C-----------CCTGCAGCCCC--------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2019292 52 + 64289059 CCCCAGTCCTTCCCTGCCCCACCTCCC--TCACC--CTC--ACCCTCACCACCTCCCC---------- i canFam3.chr17 I 2 C 0 s dasNov3.JH580157 528859 49 + 2232271 ggtcatcccttaccagcttcatcagccacgtgcct-ccctaatcctcagt------------------ i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2622851 254 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 935760 209 + 1238772 I e nomLeu3.chr19 3022573 100 + 81552678 M a score=655848.000000 s hg38.chr2_KI270769v1_alt 29003 110 + 120616 TCATCCACAC---------------CTGCTCGGCCCCTCCTCCACCGCCTCCCTCCGGCCCGCTGGTCCTTACTGCAT--Cccctcgggccctgca--------------ccctgccctctgctccctgtg-cccCCCATGC s panTro5.chr2A 3481306 110 + 111504155 TCATCCACAC---------------CTGCTCGGCCCCTACTCCACCGCCTCCCTCCGGCCCGCTGGTCCTTACTGCAT--Cccctcaggccctgca--------------ccctgccctctgctccctgtg-cccCCCATGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3351506 110 + 114371477 TCATCCACAC---------------CTGCTCGGCCCCTCCTCCACCGCCTCCCTCCAGCCCGCTGGTCCTTACTGCAT--Cccctcaggccctgca--------------ccctgccctctgctccctgtg-cccCCCATAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 227093 109 + 637652 TCATCCACAC---------------CTGCTCGGCCCCTCCTCCACCGCCTCCCTCTGGCCCGCTGGTCCTTACTGCAT--Cccctc-ggccctgca--------------ccctgccctctgctccctgtg-cccCCCATGC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3284785 111 + 108979918 TCATCCTCAC---------------CGGCTCGGCCCCTCCTCCACCTCCTGCCTCCGGCCACCTGGTCCTTACTGCAT--Cccctcgggccctgca--------------ccctgccctctgctccctgtgcccCCCCGTGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4997857 111 - 111193037 TCATCCTCAC---------------CGGCTCGGCccctcctccacctcctgcctccggccacctggtccttactgcat--cccctcgggccctgca--------------ccctgccctctgctccctgTGCCCCCCCGTGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3392594 111 + 3644372 TCATCCTCAC---------------CGACTCGGCCCCTCCTCCACCTCCTGCCTCCGGCCACCTGGTCCTTACTGCAT--Cccctcgggccctgca--------------ccctgccctctgctccctgtgcccCCCCGTGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3347253 111 - 10304083 TCATCCTCAC---------------TGGCTCGGCccctcctccacctcctgcctccggccacctggtccttactgcat--cccctcgggccctgca--------------ccctgccctctgctccctgTGCCCCCCAGTGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3430161 110 - 107702431 TCATCCTCAC---------------CGGCCCGGCCCC-CCCCCACCTcctgcctccggccacctggtccttactgcat--cccctcgggccctgca--------------ccctgccctctgctccctgTGCCCCCCCGTGC i chlSab2.chr14 I 240 C 0 s manLeu1.NW_012104432v1 964793 125 + 1565135 TCATCCTCAC---------------CGGCTCGGCCCCTCCTCCACCTCCTGCCTCCAGCCACCTGGTCCTTACTGCAT--CccctcgggccctgcaccctgccctctgctccctgccctctgctccctgtgcccCCCCGTGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3336010 110 - 13651311 tcatcctcac---------------ctgctcggcccctcctccacctcctgcctccGGCCAACTGGTCCTTACTGCAT--CCCCTCGGGCCCTGCG--------------CCCTGCCCTCTGCTCCCTGTG-CCCCCAGTGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3428505 105 - 108792865 TCATCCTCAT---------------CTGCTCGGCACCCTCTCCACGGCCTTCGTCAGGTCCCC-GGTTCTCACTGCAT--CCCCTT-GGCCCTGCA---------------CCTGCACTTTGCCCCAGG---CTGCCCGAGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3082772 120 - 7082604 TCATCCTCACAATATAAAGTGATTATTGCTCGGCGCCCCGTCCACGGCCTCCCTCTGTCCCCCTGATCCTCACTGCGT--CCCCTC-AGCCCTGCA---------------CCTGCACTCTGCCCCTGG---CCG-CCGAGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 568557 106 + 5243153 TAATCCTCAC---------------CTGCTCGGCACCCCGTCCACGGCCTCCCTCTGGTCCCCTGGTCCTCACTGCAT--CCCCTC-GGCCCTGCA---------------CCTGCACTCTGCCCCTGG---GCCACCGAGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1901815 106 - 1938448 TCATCCTC-C---------------CTGCTCGGCGCCCCCTCCACGGCCTCCCTCTGGTCCCCTGGTCCTCACTGCAT--CCCCTC-AGCCCTGCA---------------CCTGCACTCTGCCCCTGGA--CCGCCCGAGC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2510401 66 + 5252280 -----------------------------TCGTC-------CCACTGTGTCCCTCAGGCCA------------TGCAG--CCCTTC---CTCTGTG--------------CACTGCCCTCCCCGC-------CCCCCAGC-- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2019344 79 + 64289059 TGGACCACAC--------------------TGGCCTTCTCTCTGCTGTC-CCCTGTGCCCCCGAGG------CTGCCA--CCCCAGGGTTTTTGCC--------------CCCTGGA----GCTCC---------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 528908 54 + 2232271 -------------------------------------gtgtcaac--------tcttgccgcgctagccttacttcattgctcctttgact---ca--------------ccatgc-------------------------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2622851 254 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 935760 209 + 1238772 I e nomLeu3.chr19 3022573 100 + 81552678 M a score=1369260.000000 s hg38.chr2_KI270769v1_alt 29113 151 + 120616 CTGCTCTCGCCT-TGTTTTGCACACATTCTGTCCTCTTCTAGGGTCTCCG-CCCCCTCCCCTTCCCTGATTAACTCCTGCCTGTCCTCACTGTAGGTCATGTCCTGAGGGAAGAGGGCC-----------CCAGCC-TTT--------------CTAGCAGGAAAGGCCAGAG--CCTTAG s panTro5.chr2A 3481416 151 + 111504155 CTGCTCTCGCCT-TGCTTTGCACACATTCTGTCCTCTTCTAGGGTCTCCG-CCCCCTCCCCCTCCCTGATTAACTCCTGCCTGTCCTCACTGTAGGTCATGTCCTGAGGGAAGAGGGCC-----------CCAGCC-TTT--------------CTAGCAGGAAAGGCCAGAG--CCTTAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3351616 151 + 114371477 CTGCTCTCGCCT-TGCTTTGCACACATTCTGTCCTCTTCTAGGGTCTCCG-CCCCCTCCCCCTCCCTGATTAACTCCTGCCTGTCCTCACTGTAGGTCATGTCCTGAGGGAAGAGGGCC-----------CCAGCC-TTT--------------CTAGCAGGAAAGGCCAGAG--CCTTAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 227202 151 + 637652 CTGCCCTCGCCT-TGCTTTGCACACATTCTGTCCTCTTCTAGGGTCTCCG-CCCCCTCCCTTTCCCTGATTAACTCCTGCCTGTCCTCACTGTAGGTCATGTCCTGAGGGAAGAGGGCC-----------CCAGCC-TTT--------------CTAGCAGGAAAGGCCAGAG--CCTTAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3022673 151 + 81552678 CTGCTCTCGCCT-TGCTTCGCACACATTCTGTCCTCTTCTAGGGTCTCCG-CCCCCTCCTCCTCCCTGATTAACTCCTGCTTGTCCTTACTGTGGGGCATGTCCTGAGGGAAGAGGGCC-----------CCAGCC-TTT--------------CTAGCAGGAAAGGCCAGAG--CCTTAG i nomLeu3.chr19 M 100 C 0 s rheMac8.chr13 3284896 152 + 108979918 CTGCTCTCACCA-GGCTTTGCACACATTCTGTCCTCTTCGAGGGTCTCTGCCCCCCTCCTCCTCCCTGATTAACTCCTGCCTGTCCTCACGGTAGGGCATGTCCTGAGGGAAGAGGGCC-----------CCAGCC-TCT--------------CTAGCAGGACAGGCCAGAG--CCTTAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4997968 152 - 111193037 CTGCTCTCACCA-GGCTTTGCACACATTCTGTCCTCTTCGAGGGTCTCTGCCCCCCTCCTCCTCCCTGATTAACTCCTGCCTGTCCTCACCGTAGGGCATGTCCTGAGGGAAGAGGGCC-----------CCAGCC-TCT--------------CTAGCAGGACAGGCCAGAG--CCTTAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3392705 148 + 3644372 CTGCTCTCACCA-GGCTTTGCACACATTCTGTCCTCTTCGAGGGTCTCTGCCCCCCTCCTCCTCCC----TAACTCCTGCCTGTCCTCACCGTAGGGCATGTCCTGAGGGAAGAGGGCC-----------CCAGCC-TCT--------------CTAGCAGGACAGGCCAGAG--CCTTAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3347364 151 - 10304083 CTGCTCTCGCCA-GGCTTTGCACACATTCTGTCCTCTTCGAGGGTCTCTGCCCCCCTTGTCCTCCCTGATTAACTCCTGCCCGTCCTCACCGTAGGGCATGTCCTGAGGGAAG-GGGCC-----------CCAGCC-TCT--------------GTAGCAGGACAGGCCAGAG--CCTTAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3430271 150 - 107702431 CTGCTCTCACCA-GGCTTTGCACACATTCTGTCCTCTTCGAGGGTCTCT-CCCCCCTCCTCCTCCCTGATTAACTCCTGCCCGTCCTCACCG-AGGGCATGTCCTGAGGGAAGAGGGCC-----------CCAGCC-TCT--------------CTAGCAGGACAGGCCAGAG--CCTTAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 964918 152 + 1565135 CTGCTCTCGCCA-GGCTTTGCACACATTCTGTCCTCTTCGAGGGTCTCTGCCCCCCTCCTCCTCCCTGATTAACTCCTGCCCGTCCTCACCGTAGAGCATGTCCTGAGGGAAGAGGGCC-----------CCAGCC-TCT--------------CTAGCAGGACAGGCCAGAG--CCTTAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3336120 152 - 13651311 CTGCTCTCACCA-GGCTTTGCACACATTCTGTCCTCTTCGAGGGCCTCTGCCCCCCTCCTCCTCCCTGATTAACTCCTGCCCGTCCTCACCGTAGGGCATGTCCTGAGGGAAGAGGGCC-----------CCAGCC-TCT--------------CTAGCAGGACAGGCCAGAG--CCTTAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3428610 147 - 108792865 CTGCTCTCACCA-GGCTTTGCACACACTCTG---TCTTCTAGGGTCTCTACCCCTCCCCGCCTCCCTGCTTAACTCCTGTCTGTCCTCACTGTAGGTCATGTCCTGAGGGAAGAGGGCC-----------CCAGCC---T--------------CTAGCAGGAAAGGCCAGAG--CCTCAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3082892 150 - 7082604 CTGCTCTGGCCA-GGCTTTTCACACACTCTGTCTTCTTCTAGGGTCTCTGCCCCTCCCCGCCTCCCTGCTTAACTCCTGCCTGTCTTCACTGTAGGTCATGTCCTGAGGGAAGAGGGCC-----------CCAGCC---T--------------CTAGCAGCAAAGGCCAGAG--CCTCAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 568663 150 + 5243153 CTGCTCTTGCCA-GGCTTTGCACACACTCTGTCTTCTTCTAGGGTCTCTGCCCCTCCTTGTCTCCCTGCTTAACTCCTGCCTGTCCTCACTGTAGGTCATGCCCTGATGGAAGAGGGCC-----------TCAGCC---C--------------CTAGCAGGAAAGGCCAGAG--CCTCAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1901921 150 - 1938448 CTGCTCTCACCA-GGCTTTGCACACACTCTGTCTTCTTCTAGGGCCTCTGCCCCTCCCCACCTCCCTGCTTAACTCCTGCCTGTCCTCACTGTAGGTCATGTCCTGAGGGAAGAGGACC-----------CCAGCC---T--------------CTAGCAGGAAAGGCCAGAG--CCTCAG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2510467 114 + 5252280 CTGCTCACAC----GGTGTGCAC---------TCTCTTCTA-GGTTTCTG--CTCCCCCTCATCCCTGGATGACTC------------ACTG----------CCTGAGGGACACATACC------------CAGCC-TCT--------------GTGTTCAGACAGGATGCAC--CAGCAG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2019423 115 + 64289059 ------------------------TGTTCTGCCCTCCTCA-----CTCGGTCTCTTACCCATCTTCAGCTGAAGTCCCGGCAGTCC---------------------GGGAAGACTGCC-----------CTGAGC-ACTCAGATATAATGCCACCAGCAGGAAAGCCCAGTG--TGTG-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 528962 111 + 2232271 ----tcacgttagggctctgtacatgct---------------------------------------------------TCAGATTTCAGTTTGAGTCATTTCCTTAGGGAAGGCATCCATTTGTTCAGATCAGATGCCA--------------CGAATAAAAAAGGCTAGAGGTGTTTA- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2622851 254 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 935760 209 + 1238772 I a score=157549.000000 s hg38.chr2_KI270769v1_alt 29264 13 + 120616 GCCTAGGGAACCA s panTro5.chr2A 3481567 13 + 111504155 GCCTAGGGAACCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3351767 13 + 114371477 GCCTAGGGAACCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 227353 13 + 637652 GCCTAGGGAACCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3022824 13 + 81552678 GCCTAGGGAACCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3285048 13 + 108979918 GCGTAGGGAACCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4998120 13 - 111193037 GCGTAGGGAACCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3392853 13 + 3644372 GCGTAGGGAACCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3347515 13 - 10304083 GCGTAGGGAACCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3430421 13 - 107702431 GCGTAGGGAGCCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 965070 13 + 1565135 GCGTAGGGCACCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3336272 13 - 13651311 GCGTAGGGAACCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3428757 13 - 108792865 GCCTAGGGAACCG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3083042 13 - 7082604 GCCTAGGGAACCG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 568813 13 + 5243153 GCCTAGGGAACCG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1902071 13 - 1938448 GCCTAGGGAACCG i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 935969 13 + 1238772 GCCTAGGGAACCG i proCoq1.NW_012151163v1 I 209 I 1 s otoGar3.GL873658 2510581 9 + 5252280 ----GCGAGGCCA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2019538 13 + 64289059 ACATAGGTGGTTG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 529073 13 + 2232271 ACTTAGGGAATCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2622851 254 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I a score=653955.000000 s hg38.chr2_KI270769v1_alt 29277 44 + 120616 -GGAAGGGAGCAGTTATTAGTTGCCCCTGGATACAGAATCTGCCT s panTro5.chr2A 3481580 44 + 111504155 -GGAAGGGAGCAGTTATTAGTTGCCCCTGGATACAGAATCTGCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3351780 44 + 114371477 -GGAAGGGAGCAGTTATTAGTTGCCCCTGGATACAGAATCTGCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 227366 44 + 637652 -GGAAGGGAGCAGTTATTAGTTGCCCCTGGATACAGAATCTGCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3022837 44 + 81552678 -GGAAGGGAGCAGTTATTAGTTGCCCCTGGATACAGAATCTGCCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3285061 44 + 108979918 -GGAAGGGAGCAGTTATTAGTTGCCCCTGGATACAGAGTCTGCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4998133 44 - 111193037 -GGAAGGGAGCAGTTATTAGTTGCCCCTGGATACAGAGTCTGCCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3392866 44 + 3644372 -GGAAGGGAGCAGTTATTAGTTGCCCCTGGATACAGAGTCTGCCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3347528 44 - 10304083 -GGAAGGGAGCAGTTATTAGTTGCCCCTGGATACAGAGTCTGCCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3430434 44 - 107702431 -GGAAGGGAGCAGTTATTAGTTGCCCCTGGATACAGAGTCTGCCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 965083 44 + 1565135 -GGAAGGGAGCAGTTATTAGTTGCCCCTGGATACAGAGTCTGCCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3336285 43 - 13651311 -GGAAGGGAGCAGTTATTAGTTGCCCC-GGATACAGAGTCTGCCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3428770 43 - 108792865 -GGAAGGGAGCAGTTATTAGTTG-CCCTGGATACAGGCTCTGCCG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3083055 44 - 7082604 -GGAAGGGAGCAGTTATTAGTTGCCCCTGGATACGGGCTCTGCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 568826 44 + 5243153 -GGAAGGGCGCAGTTGTTAGTTGCCCCTGGATACAGGCTCTGCCG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1902084 44 - 1938448 -GGAAGGGAGCAGTTATTAGTTGCCCCTGGATACGGGCTCTGCCG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2623105 44 - 159902609 -GGAAGGGAGCAGTCATTAATCGCCCCTGGATACAGGATCTGCTC i micMur3.chr8 I 254 C 0 s proCoq1.NW_012151163v1 935983 44 + 1238772 -GGAAGCGAGCAGTAATTAATTGCCCCTGGATACAGGATCTGCTC i proCoq1.NW_012151163v1 I 1 C 0 s otoGar3.GL873658 2510590 43 + 5252280 --GGGAGGAGCCATCATTAATGGCCCCTGGGTACAGGGTCTGCCC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2019551 44 + 64289059 -GGAAAAGAGCAATAATTAATTACCCCAGCATACAGGATCTGCTT i canFam3.chr17 C 0 I 189 s dasNov3.JH580157 529086 37 + 2232271 GGAGAGGGAGCAGTAATTAAGTGCTCCTGC-TACAGGA------- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91402425 3245 - 120129022 I a score=1338161.000000 s hg38.chr2_KI270769v1_alt 29321 89 + 120616 AGATGCATATATAGAACTGGTTCAGACTTGGCACAATCTCTTTCCCTCTCACTCTTTCACATTTGCAATTCAAAGAGAATATACAGAGC s panTro5.chr2A 3481624 89 + 111504155 AGATGCATATATAGAACTGGTTCAGACTTGGCACAATCTCTTTCCCTCTCACTCTTTCACATTTGCAATTCAAAGAGAATATACAGAGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3351824 89 + 114371477 AGATGCATATATAGAACTGGTTCAGACTTGGCACAATCTCTTTCCCTCTCACTCTTTCACATTTGCAATTCAAAGAGAATATACAGAGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 227410 89 + 637652 AGATGCATATATAGAACTGGTTCAGACTTGGCACAATCTCTTTCCCTCTCACTCTTTCACATTTGCAATTCAAAGAGAATATACAGAGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3022881 89 + 81552678 AGATGCATATATAGAACTGGTTCAGACTTGGCACAATCTCTTTCCCTCTCACTCTTTCACATTTGCAATTCAAAGAGAATATACAGAGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3285105 89 + 108979918 AGATGCATATATAGAACTGGTTCAGACTTGGCACAGTCTCTTTCCCTCTCACTCGTTCACATTTGCAATTCAAAGAGAATATACAGAGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4998177 89 - 111193037 AGATGCATATATAGAACTGGTTCAGACTTGGCACAGTCTCTTTCCCTCTCACTCGTTCACATTTGCAATTCAAAGAGAATATACAGAGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3392910 89 + 3644372 AGATGCATATATAGAACTGGTTCAGACTTGGCACAGTCTCTTTCCCTCTCACTCGTTCACATTTGCAATTCAAAGAGAATATACAGAGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3347572 89 - 10304083 AGATGCATATATAGAACTGGTTCAGACTTGGCACAGTCTCTTTCCCTCTCACTCGTTCACATTTGCAATTCAAAGAGAATATACAGAGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3430478 89 - 107702431 AGATGCATATATAGAACTGGTTCAGACTTGGCACAGTCTCTTTGCCTCTCACTCGTTCACATTTGCAATTCAAAGAGAATATACAGAGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 965127 89 + 1565135 AGATGCATATATAGAACTGGTTCAGACTTGGCACAGTCTCTTTCCCTCTCACTCGTTCACATTTGCAATTCAAAGAGAATATACAGAGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3336328 87 - 13651311 AGATGCATATATAGAACTGGTTCAGACTTGGCCCAATCTCTTTCCCTCTCACTCGTTCACATTtgcaattcaa--agaatatacagagc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3428813 89 - 108792865 AGATGCGTATATAGAACCGGTTCAGACTTGGCACTGTGTCTTTCCCTCTCACTCTTTCACATTTGCAATTCAAAGAGAATATACATAGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3083099 89 - 7082604 AGATGCGTGTATAGAACTTGTTCAGACTTGGCATGATGTCTTTCCCTCTCACTCTTGCACATTTGCAATTCAAAGAGAATATACATAGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 568870 89 + 5243153 AGATGCGTATATAGAACTGGTTCAGACTTGGCACGATGTCTTTCCCTCTCACTCTTTCACATTTGCAATTCAAAAAGAATATACATAGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1902128 89 - 1938448 AGATGTGTATATAGAACTGGTTCAGACTTGGCACAGTGTCTTTCCCTCTCACTCTTTCACATTTGCAATTCAAAGAGAATATACATAGC i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2623149 88 - 159902609 AGATACAGAAATAGAACTGGTTC-AACTTGGCAGAATATCTTTCCCTCTCACTTTTTCACATTTGCAATTCAAAGAGAATATACATAGC i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 936027 89 + 1238772 AGATACATAAATAGAACTGGTTCAAACTTGGCAGGGTATCTTTCCCTCTCACTTTTTCACATTTGCAATTCAAAGAGAATATACATAGC i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2510633 88 + 5252280 AGATGCATATAGAGGGCTGCTCA-CCCTTGGCAGAGCTTGGTTCCATCATGCTTGTTCATATCTGCAATTTGAAGAGAATATACATAGT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2019784 86 + 64289059 agaTATATACATAGATTTGGTTCCAACTTGGCCGAATAACTTTTACTCTCACCTTTTCACATTCACAATTCA---AGAATGTCCGTAGC i canFam3.chr17 I 189 I 70 s dasNov3.JH580157 529123 62 + 2232271 -------------------------ACTTGGCAGAATGTGTTTCTCTCTCACTTTTTCACATTTGCAATTCA--GAGAATATATATAGT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91402425 3245 - 120129022 I a score=2062655.000000 s hg38.chr2_KI270769v1_alt 29410 138 + 120616 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGAAGGCATTTGGAGATCGTTTTAGTAAATTATCTTAACCAATCTAAAAATACTTCTGAACTGTCAACCAGAACACAGAAATCCTGTATTA----------CTT s panTro5.chr2A 3481713 138 + 111504155 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AAAAGGCATTTGGAGATCGTTTTAGTAAATTATCTTAACCAATCTAAAAATACTTCTGAACTGTCAACCAGAACACAGAAATCCTGTATTA----------CTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3351913 138 + 114371477 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGAAGGCATTTGGAGATCGTTTTAGTAAATTATCTTAACCAATCTAAAAATACTTCTGAACTGTCAACCAGAACACAGAAATCCTGTATTA----------CTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 227499 138 + 637652 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGAAGGCATTTGGAGATCGTTTTAGTAAATTATCTTAACCAATCTAAAAATACTTCTGAACTGTCAACCAGAACACAGAAATCCTGTATTA----------CTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3022970 138 + 81552678 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGAAGGCATTTGGAGATCGTTTTAGTAAATTATCTTAACCAATCTAAAAATACTTCTGAACTGTCAACCAGAACACAGAAATCCTGTATTA----------CTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3285194 138 + 108979918 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGAAGGCATTTGGAGATCATTTTAGTAAATTATCTTAACCAATCTAAAAATGTTTCTGAACTGTCAACCAGAACACAGAAATCCTGTGTTA----------CTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4998266 138 - 111193037 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGAAGGCATTTGGAGATCATTTTAGTAAATTATCTTAACCAATCTAAAAATGTTTCTGAACTGTCAACCAGAACACAGAAATCCTGTGTTA----------CTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3392999 138 + 3644372 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGAAGGCATTTGGAGATCATTTTAGTAAATTATCTTAACCAATCTAAAAATGTTTCTGAACTGTCAACCAGAACACAGAAATCCTGTGTTA----------CTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3347661 138 - 10304083 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGAAGGCATTTGGAGATCGTTTTAGTAAATTATCTTAACCAATCTAAAAATGTTTCTGAACTGTCAACCAGAACACAGAAATCCTGTGTTA----------CTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3430567 138 - 107702431 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGAAGGCATTTGGAGATCGTTTTAGTAAATTATCTTAACCAATCTAAAAATATTTCTGAACTGTCAACCAGAACACAGAAATCCTGTGTTA----------CTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 965216 138 + 1565135 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGAAGGCATTTGGAGATCGTTTTAGTAAATTATCTTAACCAATCTAAAAATGTTTCTGAACTGTCAACCAGAACACAGAAATCCTGTGTTA----------CTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3336415 138 - 13651311 catttgtattatatagagtgactattgcattgaatttagactag---agaaggcatttgGAGATCGTTTTAGTAATTTATCTTAACCAATCTAAAAATATTTCTGAACTGTCAACCAGAACACAGAAATCTTGTATTA----------CTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3428902 148 - 108792865 CATTTGTATTATATAAAGTGATTATTGCATTGAACTTAGACTAG---AGAAGGCAGTTGGAGATGGTTTTAGTAAATTATCTTAACCAATCTAAAAATATTTCTGAACTGTCAACCAGAACACAGAACGCCTGTGTTATGGGACGTTCTTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3083188 148 - 7082604 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGAAGGCATTTGGAGATCGTTTTAGTAAATTATCTTAACCAATCTAAAAATATTTCTGAACTGTCAACCAGAACACAGCAATCCTGTGTTATGTGACATTCTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 568959 148 + 5243153 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGAAGGCATTTGGAGATCGTCTTAGAAAATTATCTTAACCAATCTAAAAATATTTCTGAACTGTCAACCAGAACACAGAAATCCTGTGTTATGTGACATTCTTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1902217 148 - 1938448 CATTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGTAGGCATTTGGAGATCATTTTAGTAAATTATCTTAACCAATCTAAAAATATTTCTGAACTGTCAACCAGAACACAGAAATCCTGTGTTATGTGACATTCTTC i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2623237 141 - 159902609 CGTTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAGAGAAGAAGGCATTTGGAGATAGTTTCAATAAATTATCTTAACCAGTCTAAAAATATTTCTGAGCTGTCAACCAGAACACAGCAACCCTGTAGTA----------CTT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 936116 138 + 1238772 TGTTTGTATTATATAAAGTGATTATTGCATTGAATTTAGACTAG---AGAAGGCATTTGGAGATAGTTTCAGTAAATTATCTTAACCAGTCTAAAAATATTTCTGGACTGTCAACCAGAACACAGAAATCCTGTAGTA----------CTT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2510721 115 + 5252280 TGTCTGCTTC-----------------------GTTTAAACTAG---AGAAGGCATTTGGAGATAGTTCCAGTAAATTATCTTAACTAGTCTAAAAATATTTCTGAACTGTCAAGCAGAACACAGGAATCCTGTATTA----------CTT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 529185 129 + 2232271 CATTTTTATTATATAAAGTGACTATTACATTGGATTTAGACTAG---AGAAAGCATTTGAAGTTAGTTTTAAAAAATTATCTTACCCAGTCTAAAAATATT---------TCAACACAAACATGACAGTCGTGTATTT----------TTT i dasNov3.JH580157 C 0 I 10636 e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2019870 70 + 64289059 I a score=17100.000000 s hg38.chr2_KI270769v1_alt 29548 1 + 120616 G s panTro5.chr2A 3481851 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3352051 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 227637 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3023108 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3285332 1 + 108979918 G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4998404 1 - 111193037 G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3393137 1 + 3644372 G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3347799 1 - 10304083 G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3430705 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 965354 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3336553 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3429050 1 - 108792865 G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3083336 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 569107 1 + 5243153 G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1902365 1 - 1938448 G i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2623378 1 - 159902609 G i micMur3.chr8 C 0 I 1768 s proCoq1.NW_012151163v1 936254 1 + 1238772 G i proCoq1.NW_012151163v1 C 0 I 1698 s otoGar3.GL873658 2510836 1 + 5252280 G i otoGar3.GL873658 C 0 I 11 e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2019870 70 + 64289059 I e dasNov3.JH580157 529314 10636 + 2232271 I a score=190216.000000 s hg38.chr2_KI270769v1_alt 29549 29 + 120616 CTGTAGTCTGGACAGTTTAGGGGAACGT----G s panTro5.chr2A 3481852 29 + 111504155 CTGTAGTCTGGACAGTTTGGGGAAACGT----G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3352052 29 + 114371477 CTGTAGTCTGGACAGTTTGGGGAAACGT----G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 227638 29 + 637652 CTGTAATCTGGACAGTTTGGGGGAACGT----G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3023109 29 + 81552678 CTGCAGTCTGGACAGTTTGGGGGAACGT----G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3285333 25 + 108979918 CTGTAGTGTGGACAGTTTGGGGGAA-------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4998405 28 - 111193037 CTGTAGTGTGGACAGTTTGGGGGAACGT----- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3393138 29 + 3644372 CTGTAGTGTGGACAGTTTGGGGGAACGTC---- i macNem1.NW_012011978v1 C 0 I 33 s cerAty1.NW_012000820v1 3347800 29 - 10304083 CTGTAGTGTGGACAGTTTGGGGGAACAT-G--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3430706 29 - 107702431 CTGTAGTGTGGACAGTTTGGGGGAATGT--G-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 965355 29 + 1565135 CTGTAGTGTGGACCGTTTGGGGGAACAT--G-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3336554 29 - 13651311 CTGTAGGGTGGACGGTTTGGGGGGACGT---G- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3429051 29 - 108792865 CTGTAGTGTGGACAGTTCTGGGGAGCGT----G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3083337 29 - 7082604 CTGTAGTGTGGACAGTTTTGGGGAGCGT----G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 569108 29 + 5243153 CTGTAGTGTGCACAGTTGTGGGGAGTGT----G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1902366 29 - 1938448 CTGTAGTGTGGACAGTTTTGCAGAGCGT----G i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2510848 26 + 5252280 CCATAATTTGGACAGGTAGGGGGATG------- i otoGar3.GL873658 I 11 C 0 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2019870 70 + 64289059 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I a score=127318.000000 s hg38.chr2_KI270769v1_alt 29578 19 + 120616 GCACCGATCTCATCTTCAC s panTro5.chr2A 3481881 19 + 111504155 GCACCGATCTCATCTTCAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3352081 19 + 114371477 GCACCAATCTCATCTTCAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 227667 19 + 637652 GCACCGATCTCATCTTCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3023138 19 + 81552678 GCACCAATCTCATCTTCAC i nomLeu3.chr19 C 0 C 0 s cerAty1.NW_012000820v1 3347829 19 - 10304083 GCACCGATTTCATCTTCAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3430735 19 - 107702431 GCACCGATTTCATCTTCAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 965384 19 + 1565135 GCACCGACTTCATCTTCAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3336583 19 - 13651311 GCACCGATTTCACGTTCAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3429080 19 - 108792865 GCACCAGCTTGATCTTCAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3083366 19 - 7082604 GCACCAGTTTGATATTCAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 569137 19 + 5243153 GCACCAGTTTGATCTTCAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1902395 19 - 1938448 GCACCAGTTTGATCTTCAC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2510874 19 + 5252280 GCACCAGCTTCATCTTCAC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2019870 70 + 64289059 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I e macNem1.NW_012011978v1 3393167 33 + 3644372 I e macFas5.chr13 4998433 0 - 111193037 C e rheMac8.chr13 3285358 0 + 108979918 C a score=2444619.000000 s hg38.chr2_KI270769v1_alt 29597 310 + 120616 CGTCGATCAGTGGTTCTCTGACTTGGTCCAGTGGCCGCACACCAGCTAGTGAAGAAAACCACAGACT------------------------------------------------CCAACTGCA-----CTGTGTACGC--------TCTGGTGTCCTCATTTCC-aaa-aaaaaa-aaaaaaaaaa---TCTACAAGATAGAATTTAAGAAATCTCATTTGAGTTGCCCTGCTAATATTT--------------------------------------------GCAGCTCGCTGGTGGGTGCCGTGGAGGCCAGTACTCACCGTCAGGCTGTGGCAGGTACAGTGAAAGGAAAAACTCCATGAGAGAACGGT-GGAAAGTTCACCTGAGAGTGAAACGc------atgccagttagagtggctgaa s panTro5.chr2A 3481900 313 + 111504155 CGTCGATCAGTGGTTCTCTGACTTGGTCCAGTGGCCGCACACCAGCTAGTGAAGAAAACCACAGACT------------------------------------------------CCAACTGCA-----CTGTGTACGC--------TCTGGTTTCCTCATTTCC-aaa-aaaaaa-aaaaaaaaaacaaTCTACAAGATAGAGTTTAAGAAATCTCGTTTGAGTTGCCCTGCTAATATTT--------------------------------------------GCAGCTCGCTGGTGGGTGCCGTGGAGGCCAGTACTCACCGTCAGGCTGTGGCAGGTACAGTGAAAGGAAAAACTCCGTGAGAGAACGGT-GGAAAGTTAACCTGAGAGTGAAACac------atgccagttagagtggctgaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3352100 309 + 114371477 CGTCGATCAGTGGTTCTCTGACTTGGTCCAGTGGCCGCACACCAGCTAGTGAAGAAAACCACAGACT------------------------------------------------CCAACTGCA-----CTGTGTACGC--------TCTGGTGTCCTCATTTCC-aaa-aaaaaa-aaaaaaaaa----TCTACAAGATAGAGTTTAAGAAATCTCGTTTGAGTTGCCCTGCTAATATTT--------------------------------------------GCAGCTCGCTGGTGGGTGCCGTGGAGGCCAGTACTCACCGTCAGGCTGTGGCAGGTACAGTGAAAGGAAAAACTCCGTGAGAGAACGGT-GGAAAGTTAACCTGAGAGTGAAACac------atgccagttagagtggctgaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 227686 312 + 637652 CGTCGATCAGTGGTTCTCTGACTTGGTCCAGTGGCCGCACACCAGCTAGTGAAGAAAACCACAGACT------------------------------------------------CCAACTGCA-----CTGTGTATGC--------TCTGGTGTCCTCATTTCC-aaa-aaaaaa-aaaaaaaaa-caaGCTACAAGATAGAGTTTAAGAAATCTCATTTGAGTTGCCCTGCTAATATTT--------------------------------------------GCAGCTCGCTGGTGGGTGCCGTGGAGGCCAGTACTCACCGTCAGGCTGTGGCAGGTACAGTGAAAGGAAAAACTCCGTGAGAGAACAGT-GGAAAGTTCACCTGACAGTGAAACGc------atgccagttagagtggctgaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3023157 302 + 81552678 CGTGGATCAGTGGTTCTCTGACTTGGTCCAGTGGCCACACACCAGCCAGTGAAGAAAACCACAGACT------------------------------------------------CCAGCTGCA-----CTGTGTATGC--------TCTGGTCTCTTCATTTCC-AAA-AAAAAC-AA-----------GCTACAAGATATATTTTAAGAAATCTCATTTGAGTTGTCCTGCTAATATTT--------------------------------------------GCAGCTCGCTGGTGGGTGCCATGGAGGCCAGTACTCACTGTCAGGCTGTGGCAGGTACAGTGAAAGGAAAAACTCCATGAGAGAACGGT-GGAAAGTTCACCTGACAGCGAAACGc------atgcccgttagagtggctgaa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3285358 300 + 108979918 CGTCGATCAGTGGTTCTCTGACTGGGTCCAGTGGCTGCGCACCAGCTAGTGAAGAAAACCACAGACT------------------------------------------------CCAACTGCA-----TGATGTATGC--------TCTGGTCTCCTTCTTTC------AAAAAGAAAAAAAAAAT---GCTGCAAGGTATATTTTAAGAAATG-----TGAGTTCTCCTGCTAATATTT--------------------------------------------GCAGCTCGCTGGTTGGTGCCATGGAGGCCAGTACTCACCGTCAGGCTGTGGCAGGTACAGTGAAAGGAAAAA--CTCTGAGAGAACGGT-GGAAAGTTCACCAGACAGTAAAacac------atgctagttggagtgactgaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4998433 296 - 111193037 ---CGATCAGTGGTTCTCTGACTGGGTCCAGTGGCTGCGCACCAGCTAGTGAAGAAAACCACAGACT------------------------------------------------CCAACTGCA-----TGATGTATGC--------TCTGGTCTCCTTCTTTC------AAAAAG-AAAAAAAAAT---GCTGCAAGATATATTTCAAGAAATG-----TGAGTTCTCCTGCTAATATTT--------------------------------------------GCAGCTCGCTGGTTGGTGCCATGGAGGCCAGTACTCAGTGTCAGGCTGTGGCAGGTACAGTGAAAGGAAAAA--CTCTGAGAGAACGGT-GGAAAGTTCGCCAGACAGTAAAacac------atgctagttggagtgactgaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3393200 299 + 3644372 CGTCGATCAGTGGTTCTCTGACTGGGTCCAGTGGCTGCGCACCAGCTAGTGAAGAAAACCACAGACT------------------------------------------------CCAACTGCA-----TGATGTATGC--------TCTGGTCTCCTTCTTTC------AAAAAG-AAAAAAAAAT---GCTGCAAGATATATTTTAAGAAATG-----TGAGTTCTCCTGCTAATATTT--------------------------------------------GCAGCTCGCTGGTTGGTGCCATGGAGGCCAGTACTCACCGTCAGGCTGTGGCAGGTACAGTGAAAGGAAAAA--CTCTGAGAGAACAGT-GGAAAGTTCACCAGACAGTAAAacac------atgctagttggagtgactgaa i macNem1.NW_012011978v1 I 33 C 0 s cerAty1.NW_012000820v1 3347848 306 - 10304083 CGTCGATCAGTGGTTCTCTGACTGGGTCCAGTGGCTGCGCACCAGCTAGTGAAGAAAACCACAGACT------------------------------------------------CCAACTGCA-----CAATGTATGC--------TCTGGTCTCCTCCTTTCC-aaaaaaaaaa-aaaaaaaaaG---GCTGCAAGATATATTTTAAGAAATC-----TGAGTTGTCCTGCTAATATTT--------------------------------------------GCAGCTCACTGGTTGGTGCCATGGAGGCCAGTACTCACCGTCAGGCTGTGGCAGGTACAGTGAAAGGAAAAAGTCTGTGAGAGAACGGT-GGAAAGTTCACCAGACAGTGAAacac------atgctagttggagtgactgaa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3430754 299 - 107702431 CATCAATCAGTGGTTCTCTGACTGGGTCCAGTGGCTGCGCACCAGCTAGTGAAGAAAACCACAGACT------------------------------------------------CCAACTGCA-----CGATGTATGC--------TCTGGTCTCCTCCTTTCC--------AAA-AAAAAAAAAG---GCTACAAGATATATTTTAAGAAATC-----TGAGTTGTCCTGCTAATATTT--------------------------------------------GCAGCTCGCTGGTTGGTGCCATGGAGGCTAGTACTCACCATCAGGCTGTGGCAGGTACAGTGAAAGGAGAAACTCTGTGAGAGAACGGT-GGAAAGTTCACCAGACAGTGAAACGC------ATGCTAGttggagtgactgaa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 965403 305 + 1565135 CGTTGATCAGTGGTTCTCTGACTGGGTCCAGTGGCTGCGCACCAGCTAGTGAAGAAAACCACAGACT------------------------------------------------CCAACTGCA-----CAATGTATGC--------TCTGGTCTCCTCCTTTCC-aaa-aaaaaa-aaaaaaaaaG---GCTGCGAGATATATTTTAAGAAATC-----TGAGTTCTCCTGCTAATATTT--------------------------------------------GCAGCTCGCTGGTTGGTGCCATGGAGGCCAGTACCCACCGTCAGGCTGTGGCAGGTACAGTGAAAGGAAAAAGTCTGTGAGAGAACGGT-GGAAAGTTCACCAGACAGTGAAacac------atgctagttggagtgactgaa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3336602 296 - 13651311 CATCGATCAGTGTTTCTCTGCCTGGGTCCAGTGGCTGCGCACCAGCTAGTGAAGAAAACCACAGACT------------------------------------------------CCAGCTGCA-----CAATGTATGC--------TCTGATCTCCTCCTTTC---------CAA-AAAAAAAAAG---GCTACAAGATATATTTTAAGAAATC-----TGAATTGTCTTGGTAATATTT--------------------------------------------GCAGCTCGCTGGTTGGTGCCATGGCGGCCGGTACTCACCGTCAGGCTGTGGCAGGTACAGTGAAAGGAAAAA--CTGTGAGAGAACGGT-GGAAAGTTCACCAGACAGTGAAACGC------ATGCTAGTGGgagtggctgaa i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3429099 328 - 108792865 CGTCCATCAGTGGTACTCAGACTTGGGCTAGTGGCCACGCACCAGCTAGTGAAGAAAGCCACAGACTCCAGTGCATG-----------TGTGGGGCTGCTTCAGCAGCTGAAGAGCCAACTGTA-----CTATGTATGC--------ACTGGT---CTTATTTCC-----AAAAAA-AA-----------GCTACAAGATACATTTTCAGAAACCTCATTTGGGTTGTCCTGCTAATATTT--------------------------------------------GCTGATTGCTGGTCGGTGCCGTGGAGGCCAGTACTCACGGTGAGGCTGTGGCAGGTACAGTGAAGGCAGAAA--CTGAGAGAG-ACGGTGGGCACGCCCACCTGACAGTGAGACGC------ATGCCAGTTAG---TGCTGAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3083385 379 - 7082604 CGTTCATCAGTGGTTCTCAGACTTGGGCTAGTGGCCACACACCAGCTAGTGAAGAAAGCCACAGACTCCAGTGCAGG-----------TGTGGGGCTGCTTTAGCAGCTGAAAAGCCAACTTCA-----CTATGTATGT--------GCTGGT---CTTATTTCCAAAA-AAAAAA-AA-----------GCTACAAGATACATTTTAAGCAACCTCCTTTGGGTTGTCCTGCTAATATTTGCAGATTGCTGGTCGGTGCCATGGAGGCCGGTACTCACGGTGAGGCTGATTGCTGGTCGGTGCCATGGAGGCCGGTACTCACGGTGAGGCTGTGGCAGGTACAGTGAAAGGAGAAA--CTGAGAGAG-ACGGTGGGCACGCCCACCTGACAGTGAGACGc------atgccggtcagagcggctgaa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 569156 330 + 5243153 CGTCCACCCGTGGTTCTCCAACTTGGGCTAGTGGCCACGCACCGGCTAGTGAAGAAAGCCACAGACGCCACTGCAGG-----------TGTGGGGCTGCTTTAGCAGCTGCAAAGCCAACTGCA-----CCATGTATGT--------GCTGGT---CTTATTTCC-----AAAAAA-AA-----------GCTACAAGATACATTTTAAGAAACCTCATTTGGGTTGCCCTGCTAATATTT--------------------------------------------GCAGATGGCTGGTCCGTGCCATGGAGGCGGGCACTCACAGTGAGGCTATGGCAGGTACAGGGAAATGAGAAA--CTGAGAGAG-ACGGT-GGCACGCCCACCTGGCAGTGAGACGc------atgccagtcagagaggctgaa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1902414 331 - 1938448 CGTCCATCAGTGGTTCTCAGACTTGAGCTAGTGGCCGCGCACCAGCTAGTGAAGAAAGCCGCAGACTCCAGTGCTTG-----------TGTGGGGCTGCCTTAGCAGCTGAAAAGCCAACTGCA-----CTGTGTATGT--------GCTGAT---CTTATTTCC--AA-TAAAGA-AA-----------GCTACAAGATACATTTTAAGAAACCTCATTTGGGTCGTCCAGCTGATATTT--------------------------------------------GCAGATTGCTGGTCGGTGCCGTGGAGGCCGGTACTCATGGTGAGGCTGTGGCAGGTACAGTGAAAGGAGAAA--CT--GAGAG-ACAGTGGGCATGCCCACCTGACAGTGAGACGc------atgccagtcagagtggctgaa i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2510893 350 + 5252280 AGGTGACCAGAGCTGCTCAGCTGTGGATAAATGGCTGTGCAGCAGCTGGTGAGGGCGGGCGC-GGCTGTAGTGCAGGAGGCATCACGTGGTAGGGCAGCG---------------CCAGCTGCAGGGACCTGTGTGCGTCACCTGTGTGCAGCTTCCTCATGGCC-----CGAGAC-AAAGCAG------ACCGCAAGACACCGACTAAGAAATCGCATTCGAGTCACCCTGGCAGTATTC--------------------------------------------GCAGTGTGCCAGCCAGTGCTCTGGAG--CTGTGCTCCTCGTCAGGCCGTGGCAGGTATAGCACGAGAGAGAA--CGATGAGAGAAAGCT-GGGA-GTTCACCCTGCAGCAGGACGCCGACATGCACCCGTCAGAATGACCAAA i otoGar3.GL873658 C 0 I 208 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2019870 70 + 64289059 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I a score=-1098.000000 s hg38.chr2_KI270769v1_alt 29907 5 + 120616 aaat--a s panTro5.chr2A 3482213 5 + 111504155 aaat--a i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3352409 5 + 114371477 aaat--a i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 227998 5 + 637652 aaat--a i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3023459 7 + 81552678 aaacaga i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3285658 7 + 108979918 aaacaga i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4998729 7 - 111193037 aaacaga i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3393499 7 + 3644372 aaacaga i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3348154 7 - 10304083 aaacaga i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3431053 7 - 107702431 aaacaga i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 965708 7 + 1565135 aaacaga i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3336898 7 - 13651311 aaacaga i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3429427 5 - 108792865 AACCG-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3083764 5 - 7082604 aacca-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 569486 5 + 5243153 aacca-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1902745 5 - 1938448 aacca-- i aotNan1.NW_018507213v1 C 0 I 31 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2019870 70 + 64289059 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I e otoGar3.GL873658 2511243 208 + 5252280 I a score=264501.000000 s hg38.chr2_KI270769v1_alt 29912 44 + 120616 gcatggacaacaccaagtgccacgggacgtgcag---ccgtgggacc s panTro5.chr2A 3482218 44 + 111504155 gcatggacaacaccaagtgccacgggacgtgcag---ccgtgggacc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3352414 44 + 114371477 gcatggacaacaccaagtgccacgggacgtgcag---ccgtgggacc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 228003 44 + 637652 gcatggacaacaccaagtgccacgggacgggcag---ccgcgggacc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3023466 44 + 81552678 gcacggacaacaccaagtgccacgggacgtgcag---ccgcgggact i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3285665 44 + 108979918 ccacggacaccaccaagtgccgtgggatgtgcaa---ccgcaggacc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4998736 44 - 111193037 ccacggacaccaccaagtgccgtgggatgtgcaa---ccgcaggacc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3393506 44 + 3644372 ccacggacaccaccaagtgccgtgggatgtgcaa---ccgcaggacc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3348161 44 - 10304083 ccacggacaccaccaagtgccgtgggatgtgcaa---ccacaggacc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3431060 44 - 107702431 gcacagacaccaccaagtgccatgggatgtgcaa---ccgcaggacc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 965715 44 + 1565135 ccacggacaccaccaagtgcggtgggatgtgcaa---ccgcaggacc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3336905 44 - 13651311 gcacggacaccaccgagtgccgtgggatgtgcaa---ccgcaggacc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3429432 44 - 108792865 -caccgacgacacccagtgctgcaggatgtgccggccccacggga-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3083769 42 - 7082604 -caccaacgacacccggtgctg--ggatgtgccggccccacggga-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 569491 42 + 5243153 -cactgacaacacccagtgctg--gggtgtgccagccccacgagc-- i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2019870 70 + 64289059 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I e otoGar3.GL873658 2511243 208 + 5252280 I e aotNan1.NW_018507213v1 1902750 31 - 1938448 I a score=2648495.000000 s hg38.chr2_KI270769v1_alt 29956 290 + 120616 cctcactgct--agggaaggc-aagatggcgcggccacttaggaagaca-------gcttggcggcctcctacaacactaaacatactcttaggtacaacccagcaatccagttactgcattacgctcctggatatttcacccagttatgccgaatgcttatatccacacaagaatctgcccaaagatgttgataccagctttatccatagttgccaaaaactagaggcaaccaaggggtccttcgataggtcagtgggtaaacacactggtaatgtggacagtaggatgttcagcattt s panTro5.chr2A 3482262 290 + 111504155 cctcactgct--agggaaggc-aagatggtgcggccacttaggaagaca-------gcttggcggcctcctacaacagtaaacatactcttacgtacaacccagcaatccagttactgcattacgctcctggatatttcacccagttatgccgaatgcttatatccacacaagaatctgcccaaagatgttgataccagctttatccgtagttgccaaaaactagaggcaaccaaggggtccttcgataggtcagtgggtaaacacactggtaatgtggacagtaggatgttcagcattt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3352458 290 + 114371477 cctcactgct--agggaaggc-aagatggtgcagccacttaggaagaca-------gcttggcggcctcctacaacactaaacatactcttacgtacaacccagcaatccagttactgcattacgctcctggatatttcacccagttatgccgaatgcttatatccacacaagaatctgcccaaagatgttgataccagctttatccgtagttgccaaaaactagaggcaaccaaggggtccttcgataggtcagtgggtaaacacactggtaatgtggacagtaggatgttcagcattt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 228047 290 + 637652 cctcactgct--agggaaggc-aagatggcgcggccacttaggaagaca-------gcttggtggcctcctacaacactaaacatactcttacgtacaacccagcaatccagttactgcattacgctcctggatatttcacccagttatgccgaatgcttatatccacacaagaatctgcccaacgatgttgataccagctttatccatagttgccaaaaactagaggcaaccaagaggtccttcgataggtcagtgggtaaacacactggtaatgtggacagtaggatgttcagcattt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3023510 289 + 81552678 cctcactgct--ggggaaggc-aagatggcacggccacttaggaagaca-------gcttggcggcctcctacagcactaaacacactctgacatacaacccagcaatccagttattgcattacgctcctggatatttcacccagttatgccgaatgcttatatccacacaagaatctgcccaaagctgttgataccagctttatccatagttgccaaaaactgga-gcaaccaagaggtccttcgataggtcagtgggtaaacacactgtttatgtggacagtagaatgttcagcattt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3285709 289 + 108979918 cctcgctgct--ggggaaggc-aaggtggcgtggccacttaggaggaca-------gcttggtga-ctcctgcaacactaaacgcactcttacatacaacccagcactgcggttactgcattccgctcctggatgtctcacccagttgtgccgaatgcttatatccacacaagaatcttcccaaagatgttgatgccagctttatccatagttgccaaaaactagaggcaaccaagaggtccttcaataggtcagtgggtaaacaaactggtaatctggacagtagaatgttcagcattt i rheMac8.chr13 C 0 I 364 s macFas5.chr13 4998780 289 - 111193037 cctcgctgct--ggggaaggc-aaggtggcgtggccacttaggaggaca-------gcttggtga-ctcctgcaacactaaacgcactcttacatacaacccagcactgcggttactgcattccgctcctggatgtctcacccagttgtgccgaatgcttatatccacacaagaatctgcccaaagatgttgatgccagctttatccatagttgccaaaaactagaggcaaccaagaggtccttcaataggtcagtgggtaaacaaactggtaatctggacagtagaatgttcagcattt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3393550 289 + 3644372 cctcgctgct--ggggaaggc-aaggtggcgtggccacttaggaggaca-------gcttggtga-ctcctgcaacactaaacgcactcttacatacaacccagcactgcggttactgcattccgctcctggatgtctcacccagttgtgctgaatgcttatatccacacaagaatctgcccaaagatgttgatgccagctttatccatagttgccaaaaactagaggcaaccaagaggtccttcaataggtcagtgggtaaacaaactggtaatctggacagtagaatgttcagcattt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3348205 288 - 10304083 cctcgctgct--ggggaaggc-aaggtggcgcagccacttaggaggaca-------gcttggtga-ctcctgcaacactaaacgcactcttacatacaacccagcactccggttactgcattccgctcctggatgtctcacccagttgtgccgaatgcttatatccacacaagaatctgcccaaagatgttgatgccagcttt-tccatagttgccaaaaactagaggcaaccaagaggtccttcaataggtcagtgggtaaacaaactggtaatctggacagtagaatgttcagcattt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3431104 297 - 107702431 cctcgctgct--ggggaaggcaaaggtggcgcagccacttaggaggtgacttgctggcttggtga-ctcctgcaacactaaacgcactctgacatacaacccagcactccggttactgcattccgctcctggatatctcacccagttgtgccgaatgcttgtatccacacaagaatctgcccaaagatgttgatgccagctttatccatagttaccaaaaactagaggcaaccaagaggtccttcaataggtcagtgggtaaacaaactggtaatctggacagtagaatgttcagcattt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 965759 289 + 1565135 cctcgctgct--ggggaaggc-aaggtggcgcggccacttaggaggaca-------gcttggtga-ctcctgcaacactaaacgcactcttacatacaacccagcactccggttactgcattccgctcctggatgtctcacccagttgtgccgaatgcttatatccacacaagaatgtgcccaaagatgttgatgccagctttatccatagttgccaaaaactagaggcaaccaagaggtccttcaataggtcagtgggtaaacaaactggtaatctggacagtagaatgttcagcattt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3336949 289 - 13651311 cctcgctgct--ggggaaggc-aaggtggcgcggccacttaggaggaca-------gcttggtga-ctcctgcaacactaaacgcactcttacatacaagccagcactccagttactgcactctgctcctggatatctcacccagttgtgccgaatgcttgtatccacacaagaatctgcccaaagatgttgatgccagctttatccatagttgccaaaaactagaggcaaccaagaggtccttcagtaggtcagtgggtaaacaaactggtaatctggatggtagaatgttcagcattt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3429476 287 - 108792865 cctcactgctggggggaaggc-aggatggtgcggccgcttaggaatgca-------gcgtggtggcttcctcaagcactaaacagactcccacatacaacccagcaatctggttactgcattaggctcctggatatttctgccagtcatgctgaatgctcatatccgcacaagaatctacccaaagatgttgatagcagttttatccatagttgccaaaaagtagacaaaacccagaggtccttccgaaggtcagcggatacacgaactggtgatctggatagtggaatgttcag----- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3083811 290 - 7082604 cctcactgct-gggggaaggc-gggatgg-gcagccacttaggaaggca-------gcatggcggcttcccgaagcactaaacagactctcacaaacagcccagcaatctggtcactgtattaggctcctggatatctctgcccgtcatgctgaatgctcatattggcacgagaatctacccaaagatgttgatagcagttttatccatagttgccaaaaactagacaaaaccaagaggtccttccgtaggtcagcggataaactaactggtactctggacagtagaatgttcagcgttt i saiBol1.JH378218 C 0 I 2 s cebCap1.NW_016107454v1 569533 291 + 5243153 cctcactgcg-gggggaaggc-aggatggtgcggccacttaggaaggca-------gcatggcggcttcctgcagcactaaacagactctcacgtacagcccagcagtctggttactgcattaggctcctggatatttctgccagtcatgctgaatgcgcatatccgcacaagaatctacacaaagatgttgatagcagttttatccatagttgccaaaaactagacaaaaccaagaggtccttccgtaggtcagtggataaacgaactggtaatctggacagtagaatgttcagcattt i cebCap1.NW_016107454v1 C 0 I 2 s aotNan1.NW_018507213v1 1902781 291 - 1938448 cctcactgcc-gggggaaggc-aggatggtgcggccatttaggaaggca-------ccgcggcggcttcctgaagcactgaacagactctcacatgcaacccagcaatctggttactgcattaggctcctggatatttctgccagtcatgctgaatgctcatatctgcacaagaatctacccaaagatgttgatagcagttttatccatagttgccaaaaactagacaaaaccaagaagtccttccgtaggtcagcggataaacgaactggtaatctggacagtagaatgttcagcgttt i aotNan1.NW_018507213v1 I 31 I 2 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2019870 70 + 64289059 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I e otoGar3.GL873658 2511243 208 + 5252280 I a score=415729.000000 s hg38.chr2_KI270769v1_alt 30246 83 + 120616 aaaaaaaaaacaactatcaacccctcagaagacctggaggaaactgagatgcCTGCAGCCCAGGGACGGCTGGTGGCTTGCAG s panTro5.chr2A 3482552 83 + 111504155 aaaaaaaaaacaactatcaacccctcagaagacctggaggaaactgagatgcCTGCAGCCCAGGGATGGCTGGCGGCTTGCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3352748 83 + 114371477 taaaaaaaaacaactatcaacccctcagaagacctggaggaaactgagatgcCTGCAGCCCAGGGATGGCTGGCGGCTAGCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 228337 83 + 637652 taaaaaaaaacaactatcaacccctcagaagacctggaggaaactgagatgcCTGCAGCCCAGGGACGGCTGGCAGCTTGCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3023799 82 + 81552678 -aaaaaaaaacaactatcaacccctcagaagacctggaggaaactgagatgcCTGCAGCCCAGGGACAGCTGGCGGCTTGTGG i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 4999069 60 - 111193037 -ttaaaaaacgaactatcaacccctgagaagacctggaggaagctgagatgTCTGCAGTGC---------------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3393839 60 + 3644372 -ttaaaaaacgaactatcaacccctgagaagacctggaggaagctgagatgTCTGCAGTGC---------------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3348493 60 - 10304083 -ttgaaaaacgaactatcaacccctgagaagacctggaggaagctgagatgTCTGCAGCGC---------------------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3431401 60 - 107702431 -ttaaaaaacgaactatcaacccctgagaagacctggaggaagctgagatgTCTGCAGCGC---------------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 966048 60 + 1565135 -ttagaaaacgaactatcaacccctgagaagacctggaggaagctgagatgTCTGCAGCGC---------------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3337238 60 - 13651311 -ttaaaaaacgaactatcaacccctgagaagagctggaggaaactgagatgTCTGCAGCGC---------------------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3429763 65 - 108792865 -----------------caGCCGCTGAGGAGACCCGGAGG-AGCTGAGGTGCCTGCGGCCCGGAGACAGCTGGCGGCTTGTGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3084103 82 - 7082604 aaagaaagacaaactctcaacccctgagaagacctggagg-agctgagatgcCTGCGTCCCGGAGACAGCTGGCGGCTTGTGG i saiBol1.JH378218 I 2 C 0 s cebCap1.NW_016107454v1 569826 82 + 5243153 aaagaaagacgaactctcaagccctaagaagacctggagg-aGCTGAGATGTCTGCGGCCTGGAGACAGCTGGTGGCTTGTGG i cebCap1.NW_016107454v1 I 2 C 0 s aotNan1.NW_018507213v1 1903074 82 - 1938448 aaagaaagacgaactctcaacccctgagaggacctggagg-agctgagatgcCTGCGGCCCAGAGACAGCTGGCGGCTTGTAA i aotNan1.NW_018507213v1 I 2 C 0 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2019870 70 + 64289059 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I e otoGar3.GL873658 2511243 208 + 5252280 I e rheMac8.chr13 3285998 364 + 108979918 I a score=2655944.000000 s hg38.chr2_KI270769v1_alt 30329 292 + 120616 CAGGTCACACGGCTACTCAGGCGTAGAGCCTGGCCTGTCTGAAGCTCAAGGCCCAGCACCCGTTCCTTTCCTTACACATAGAGTTTCACTAGGCACGCACACGCAGACTCTGGATTGAT-GAAGAAACAGTTTGGGAATTTTTAACAGCATCGTTCacatttttaatgcctgcctcctgcctggcactgtgctcagcactttcatgtatcttctttaattgtcacatctgtgaggtgggACAGATGACCTCAGCTCTGTAAACTCAGCCATTGCTGAGCCTGCAGTGTGAG--TG s panTro5.chr2A 3482635 292 + 111504155 CAGGTCACATGGCTACTCAGGCTTAGAGCCTGGCCTGTCTGAAGCTCAAGGCCCAGCACCCGTTCCTTCCCTTACACATAGAGTTTCACTAGGCACGCACACGCTGACTCTGGATTGAT-GGAGAAACAGTTTGGGAATTTTTAACAGCATCGTTCacatttttaatgcctgcctcctgcctggcactgtgctcagcactttcatgtatcttctttaattgtcacatctgtgaggtgggACAGATGACCTCAGCTCTGTAAACTCAGCCATTGCTGAGCCTGCAGTGTGAG--TG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3352831 292 + 114371477 CAGGTCACATGGCTACTCAGGCTTAGAGCCTGGCCTGTCTGAAGCTCAAGGCCCAGCACCCGTTCCTTCCCTTACACATAGAGTTTCACTAGGCATGCACACGCTGACTCTGGATTGAT-GGAGAAACAGTTTGGGAATTTTTAACAGCATCGTTCacatttttaatgcctgcctcctgcctggcactgtgctcagcactttcatgtatcttctttaattgtcacatctgtgaggtgggACAGATGACCTCAGCTCTGTAAACTCAGCCATTGCTGAGCCTGCAGTGTGAG--TG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 228420 292 + 637652 CAGGTCACACGGCTACTCAGGCGTAGAGCCTGGCCTGTCTGAAGCTCAAGGCCCAGCACCAGTTCCTTCCCTTACACATAGAGTTTCACTAGGCACGCACACGCTGACTCTGGATTGATGGGAGAAACAGTTTGGGAATTTTTAACAGCATCGTTCAcatttttaatgcctgcctcctgcctggcactgtgctcagcactttcatgtatcttc-ttaattgtcacatctgtgaggtgggACAGATGACCTCAGCTCTGTAAACTCAGCCATTGCTGAGCCTGCAGTGTGAG--TG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3023881 292 + 81552678 CAGGTCACATGGCTACTCAGTCGTAGAGCCTGGCCTGTCTGAAGCTCAAGGCCCAGCACCAGTTCCTTCCCTTACACATAGAGTTTCACTAGGCACGCACACGCTGACTCTGGATTGAT-GTAGAAACAGTTTGGGAATTTTTAACAGCATCGTTCacatttttaatgcctgcctcctgcctggcactgtgctcagcactttcatgtatcttatttaattgtcacatctgtgaggtgggACAGATGACCTCAGCTCTGTAAACTCCACCATTGCTGAGCCTGCAGTGTGAG--AG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3286362 292 + 108979918 CAGGTCACACGGCTGCTCACTCATAGAGCCTGGCCTGTCTGAAGCTCCGGGCCCAGCACCAGTTCCTTCCCTCACACACAGAGTTTCACTGGGCACGCACACGCCAGCTCTGGATTGAT-GTAGAAACAGTTTGGGAATTTTTAACAGCATCGTCCacatttttaatgcctccctcctgcctggcactgtgttgagcactttcgtatatcttacttaattgtcacatctgtaaggtgggacagatgacctcagctctgtaaactcagccattgctgagcctgcagtgtgag--tg i rheMac8.chr13 I 364 C 0 s macFas5.chr13 4999129 292 - 111193037 CAGGTCACATGGCTGCTCACTCATAGAGCCTGGCCTGTCTGAAGCTCCGGGCCCAGCACCAGTTCCTTCCCTCACACACAGAGTTTCACTGGGCACGCACACGCCAGCTCTGGATTGAT-GTAGAAACAGTTTGGGAATTTTTAACAGCATCGTCCacatttttaatgcctccctcctgcctggcactgtgttgagcactttcatctatcttatttaattgtcacatctgtaaggtgggACAGATGACCTCAGCTCTGTAAACTCAGCCATTGCTGAGCCTGCAGTGTGAG--TG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3393899 292 + 3644372 CAGTTCACACGGCTGCTCACTCATAGAGCCTGGCCTGTCTGAAGCTCCGGGCCCAGCACCAGTTCCTTCCCTCACACACACAGTTTCACTGGGCACGCACACGCCAGCTCTGGATTGAT-GTAGAAACAGTTTGGGAATTTTTAACAGCATCGTCCACATTTTTAATGCCTCTCTCCtgcctggcactgtgttgagcactttcatatatcttatttaattgtcacatctgtaaggtgggACAGATGACCTCAGCTCTGTAAACTCAGCCATTGCTGAGCCTGCAGTGTGAG--TG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3348553 289 - 10304083 CAGGTCACACGGCTGCGCACTCATAGAGCCTGGCCTGTCTGAAGCTCCGGGCCCAGCACCAGTTCCTTCCCT--CACACAGAGTTTCACTGGGCACGCACACGCCAGCTCTGGATTGAT-GTAGAAGCAGTTTGGGAATTTTTAACAGCATCGTCCACA-TTTTAATGCCTCCCTCCtgcctggcactgtgttcagcactttcatatgtcttatttaattgtcacatccgtaaggtgggacagatgacctcagctctgtaaactcagccattgctgagcctgcagtgtgag--tg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3431461 292 - 107702431 CAGGTCACACGACTGCTCGCTGATAGAGCCTGGCCTGTCTGAAGCTCCGGGCCCAGCACCAGTTCCTTCCCTCACACATAGAGTTTCACTGGGCACGCACACGCCAACTCTGGAATGAT-GTAGAAACAGTTTGGGAATTTTTAACAGCATCGTTCacatttttaatgcctccctcctgcctggctctgtgttcagcactttcatatatcttatttaattgtcacatctgtaaggtgggACAGATGACCTCAGCTCTGTAAACTCAGCCATTGCTGAGCCTGCAGTGTGAG--TG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 966108 292 + 1565135 CAGGTCACACGGCTGCTCACTCATAGAGCCTGGCCTGTCTGAAGCTCCGGGCCCAGCACCAGTTCCTTCCCTCACACACAGAGTTTCACTGGGTACGCGCACGCCAGCTCTGGATTGAT-GTAGAAACAGTTTGGGAATTTTTAACAGCATCGTCCacatttttaatgcctccctcctgcctggcactgtgttcagcactttcatgtatcttatttaattgtcacatccgtaaggtgggACAGATGACCTCAGCTCTGTAAACTCAGCCATTGCTGAGCCTGCAGTGTGAG--TG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3337298 290 - 13651311 CAGGTCACACGGCTGCTCACTCAGAGAGCCTGGCCTGTCTGAAGCTCCGGGCGCAGCACCAGTTCCTTCCCT--CACACAGAGTTTCACTGGGCACGCCCACGCCCACTCTGGATTGGT-GTAGAAACGGTTTGGGAATTTTTAACGGCATCGTTCACATGTTTAATGCCCTCCTCCtgcctggcactgtgttcagcactttcatgtatcttatttaattgtcacatctgtaaggtgggACAGATGACCTCAGCTCTGTAAACTCAGCCATTGCTGAGCCTGCAGTGTGAG--TG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3429828 283 - 108792865 CAGGTCGCACAGCTA-GCGGTCATAGAGCCTGACCTGTCTGATGCCCCGGGCCT-GCACCAGTTCCTTCCCTCACATGT---GGTTCACTGGGCATGCACACGCCGACTCTGGATTTAC-GTCGTGACAG-TTGGGAATGCGTAGCAGCATGGTCCACA-CTTCAATGTCTGCCTCgtgcccggcaccgtgctcagcacttccatagaccttatctaatggtcacatctgtgaggtgggacagatgacccccactctgtaaacgCAGCCATCGCTGAGCCTGCGGTGTGAG---- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3084185 289 - 7082604 CAGGTCACACGGCTG-GTCTTCATAGAGCCTGACCTGTCTGATGCTGCGGGCCCAGCACTAGTTCCTTCCCTCACACATGCGGTTTCACTAGGCACACGCACGCCGACGCTGGATTTAT-GGAGGGACAGTTTGGGAATTTGTAGCAGCACTGTccacgtttttaatgtctgcctcgtgcccggcactgtgctcagcacttccatagatcttctctgatggtcacatctgtgaggtgggacagatgacccccgctctgtaaacgCAGCCATCACTGAGCCTGCAGTGTGAG---- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 569908 291 + 5243153 CAGGTCACACGGCTA-GCTGTCATAGAGCCTGACCTGTCTGGTGCTCTGGGCCCTGCCCCAGTTCCTTGCCTCACACACATGGTTTCACTAGGCACGCACACACCAACTCTGGATTTAT-GTAGGGACAGTTTGGGAATTTGTAGCAGCATTGTCCAcatttttaatgtctgcctcgtgcccggctctgtgctcagcacttctgtagatcttatccaatggtcacatctttgaggtgggacagatgacccccgctctgtaaacgcagccatcactgagcctgcagtgtgagtg-- i cebCap1.NW_016107454v1 C 0 I 19 s aotNan1.NW_018507213v1 1903156 289 - 1938448 CAGGTCACACGGCTA-GCCGTCATAGAGCCTGACCTGTCTGGTGCTCCGGGCCCTGCACCAGTTCCTTCCCTCACACATGTGGTTTCACTAGGCACGCACACGCCAACTCTGGATTTAT-GTAGGGACAGTTTGGGAATTTGTAGTGGCATTGTCCAcatttttaatgtctgcctcgtgcccggcactgtgctcagcacttccatagatcttatctaatggtcacatctgtgaggtgggacagatgacccccgctctgtaaacgCAGCCATCGCTGAGCCTGCAGTGTGAG---- i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2019870 70 + 64289059 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I e otoGar3.GL873658 2511243 208 + 5252280 I a score=60841.000000 s hg38.chr2_KI270769v1_alt 30621 10 + 120616 TGAGGCCACA s panTro5.chr2A 3482927 10 + 111504155 TGAGGCCACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353123 10 + 114371477 TGAGGCCACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 228712 10 + 637652 TGAGACCACG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024173 10 + 81552678 TGAGGCCACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3286654 10 + 108979918 tgaggccaca i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4999421 10 - 111193037 TGAGGCCACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3394191 10 + 3644372 TGAGGCCACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3348842 10 - 10304083 tgaggccaca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3431753 10 - 107702431 TGAGGCCACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 966400 10 + 1565135 TGAGGCCACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3337588 10 - 13651311 TGAGGCCACA i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2019870 70 + 64289059 I e saiBol1.JH378218 3084474 0 - 7082604 C e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I e otoGar3.GL873658 2511243 208 + 5252280 I e cebCap1.NW_016107454v1 570199 19 + 5243153 I e aotNan1.NW_018507213v1 1903445 0 - 1938448 C e calJac3.chr14 3430111 0 - 108792865 C a score=510271.000000 s hg38.chr2_KI270769v1_alt 30631 52 + 120616 TGTCAGAGCCCCGGAAGACACAAGCCCCACTCTCCTGCCTTCAACACAG-CCC s panTro5.chr2A 3482937 52 + 111504155 TGTCAGAGCCCCGGAAGACACAAGCCCCACTCTCCTGCCTTCAACACAG-CCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353133 52 + 114371477 TGTCAGAGCCCCGGAAGACACAAGCCCCACTCTCCTGCCTTCAACACAG-CCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 228722 50 + 637652 TGTCAGAGCCCCGGAAGACACAAGCCCCA--CTCCTGCCTTCAACACAG-CCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024183 52 + 81552678 TGTCAGAGCCCCGGAAGACACAAGCCCCACTCTCCTGCCTTCAGCACGG-CCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3286664 52 + 108979918 tgtcagagccccggaagacacaagccccgctctcctgcctgcaacacag-ccc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4999431 52 - 111193037 TGTCAGAGCCCCGGAAGACACAAGCCCCGCTCTCCTGCCTGCAACACAG-CCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3394201 52 + 3644372 TGTCAGAGCCCCGGAAGACACAAGCCCCGCTCTCCTGCCTGCAACACAG-CCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3348852 52 - 10304083 tgtcagagccccggaagacacaagccccgctctcctgcctgcaacacag-ccc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3431763 52 - 107702431 TGTCAGAGCCCCGGAAGACACAAGCCCCAGTCTCCTGCCTGCAACACAG-CCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 966410 52 + 1565135 TGTCAGAGCCCCGGAAGACAGAAGCCCCGCCCTCCTGCCTGCGACACAG-CGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3337598 53 - 13651311 TGTCAGAGCCCCGGAAGACACAAGCCCCACTCTCCTGCCTGCAACACAGCCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430111 52 - 108792865 TGTCAGAGCCCCGGAAGACACAAGCCCCCCTCTCCTGCCTGCGGCACAG-CCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3084474 52 - 7082604 TGTCAGAGCCCCAGAAGACGCAAGCCCCCCTCTCCTGCCTGCGGCACAG-CCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 570218 49 + 5243153 tgtcagagccccggaagacacag---cccccctcctgcctgcggcacag-ccc i cebCap1.NW_016107454v1 I 19 C 0 s aotNan1.NW_018507213v1 1903445 52 - 1938448 TGTCAGAGCCCCGGAAGACACAAGCCCCCCTCTCCTGCCTGCGGCATAG-CCC i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2019870 70 + 64289059 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I e otoGar3.GL873658 2511243 208 + 5252280 I a score=516390.000000 s hg38.chr2_KI270769v1_alt 30683 67 + 120616 CCCACACCGCCGCTGTGGCT---------GGAATT-GGAGCAGGTCGTTAGCTCCTGCCTGAGGAAGCCCAAATAAA s panTro5.chr2A 3482989 67 + 111504155 CCCACACTGCCACTGTGGCT---------GGAATT-GGAGCAGGTCGTTAGCTCCTGCCTGAGGAAGCCCAAATAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353185 67 + 114371477 CCCACACTGCCACTGTGGCT---------GGAATT-GGAGCAGGTCGTTAGCTCCTGCCTGAGGAAGCCCAAATAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 228772 67 + 637652 CCCACACCGCCACTGTGGCT---------GGAATT-GGAGCAGGTCGTTAGCTGCTGCCTGAGGAAGCCCAAATAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024235 67 + 81552678 CCCACACCCCCACTGCGGCT---------GGAATT-GGAGCAGGTTGTTAGCTCCTGCCTGAGGAAGCCCAAATAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3286716 64 + 108979918 c---cgcccccactgcaGCT---------GGAATT-AGAGCAGGTCGTTAGCTCCTGCCTGAGGAAGCCCAAATAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4999483 64 - 111193037 C---CGCCCCCACTGCAGCT---------GGAATT-AGAGCAGGTCGTTAGCTCCTGCCTGAGGAAGCCCAAATAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3394253 64 + 3644372 C---CGCCCCCACTGCAGCT---------GGAATT-AGAGCAGGTCATTAGCTCCTGCCTGAGGAAGCCCAAATAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3348904 64 - 10304083 c---cgcccccactgcaGCT---------GGAATT-AGAGCAGGTCGTTAGCTCCTGCCTGAGGAAGGCCAAATAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3431815 64 - 107702431 C---CGCCCCCACTGCAGCT---------GGAATT-AGAGCAGGTCGTTAGCTCCTGCCTGAGGAAGCCCAAATAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 966462 64 + 1565135 C---CGCCCCCACTGCAGCT---------GGAATT-AGAGCAGGTCGTTAGCTCCTGCCTGAGGAAGGCCAGATAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3337651 64 - 13651311 C---CACCCCCACTGCAGCT---------GGAATT-AGAGCAGGTCGTTAGCTCCTGCGTGAGGAAGCCCAAATAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430163 59 - 108792865 C---------CACTGCAGCT---------GGAATTCATAGCAAGTCCTTAGCTCCCGCCTGGGGACACCCAAGTAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3084526 59 - 7082604 C---------CACTGCAGCT---------GGGATTCAGAGCAAGCCCTTAGCTCCCACCTGGGGACGCCCAAATAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 570267 58 + 5243153 c---------cactgcaGCT---------GGAATTCAGAGCGAGTCCTTAGCTCCCGCCTGGGGACG-CCAAATAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1903497 59 - 1938448 C---------CACTGCAGCT---------GGAATTCAGAGCAAGTCCTTAGCTCCCGCCTGGGGACGCCCAAATAAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2511451 69 + 5252280 ------cccacacctcTGCTCCCTCCCAGGGAGTG-AGAAGATTGGGCTCGCCCCCTCCCCAGGGA-TCAGAAGGAA i otoGar3.GL873658 I 208 C 0 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2019870 70 + 64289059 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I a score=1546166.000000 s hg38.chr2_KI270769v1_alt 30750 164 + 120616 GGACTGCAGAACAACTGTAGTGCAAAGCTGAGACTCATTGCCCTCCTAGGCG-TTTCATGAGCAG-GTCCTGAGTTCTCTGTGTCCCGGCGTGGAGTG---CAGGAGGCGTGG------AAAGGGAGTAGTGCGTGTGTGAGTTAGTATAC----AGAAGAAGTGTGTGGCAGGCTCTA s panTro5.chr2A 3483056 164 + 111504155 GGACTGCAGAACAACTGTAGTGCAAAGCTGAGACTCATTGCCCTCCTAGGCG-TTTCATGAGCAG-GCCCTGAGTTCTCTGTGTCCCAGCGTGGAGTG---CAGGAGGTGTGG------AAAGGGAGTAGTGCATGTGTGAGTTAGTATAC----AGAAGAAGTGTGTGGCAGGCTCTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353252 162 + 114371477 GGACTGCAGAACAACTGTAGTGCAAAGCTGAGACTCATTGCCCTCCTAGGCG-TTTCATGAGCAG-GCCCTGAGTTCTC--TGTCCCAGCGTGGAGTG---CAGGAGGTGTGG------AAAGGGAGTAGTGTGTGTGTGAGTTAGTATAC----AGAAGAAGTGCGTGGCAGGCTCTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 228839 164 + 637652 GGACTGCAGAACAACTGTAGTGCAAAGCTGAGACTCATTGCCCTCCTAGGCG-TTTCATAAGCAG-GCCCTGAGTTCTCTGTGTCCCAGCGTGGAGTG---CAGGAGGTGTGG------AAAGGGAGTAGTGCGGGTGTGAGTTAGTATAC----AGAAGAAGTGTGTGGCAGGCTCTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024302 164 + 81552678 GGACTGCAGAACAACTGTAGTGCAAAGCTGAGACTCATTGCCCTCCTAGGCA-CTTCATGAGCAG-GCCCTGCGTTCTCTGTGTCCCGGCGTGgagtg---caggaggtgtgg------agagggagtagtgtgtgtgtgagttagtATAC----AGAAGAAGTGTGTGGCAGGCTCTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3286780 164 + 108979918 GGACTGCAGAACAACCGTAGTGCAAAGCTGACACTCATTTCCCTCCTAGGCG-CTTCGTGAGCAG-GCCCTGAGTTCTCTGTGTCCGGGCGTGGAGGG---CAGGAGGTGTGG------AGAGGGAGCAGTGCGTGTGTGAGCTAGTACAC----AGAAGACGTGTGTGGCAGGCTCTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4999547 164 - 111193037 GGACTGCAGAACAACCGTAGTGCAAAGCTGACACTCGTTTCCCTCCTAGGCG-CTCCGTGAGCAG-GCCCTGAGTTCTCTGTGTCCGGGCGTGGAGGG---CAGGAGGTGTGG------AGAGGGAGCAGTGCGTGTGTGAGCTAGTACAC----AGAAGACGTGTGTGGCAGGCTCTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3394317 164 + 3644372 GGACTGCAGAACAACCGTAGTGCAAAGCTGACACTCATTTCCCTCCTAGGCG-CTTCGTGAGCAG-GCCCTGAGTTCTCTGTGTCCGGGCGTGGAGGG---CAGGAGGTGTGG------AGAGGGAGCAGTGCGTGTGTGAGCTAGTACAC----AGAAGACGTGTGTGGCAGGCTCTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3348968 164 - 10304083 GGACTGCAGAACAACCGTAGTGCAAAGCTGACACTCATTTCCCTCCTAGGCG-CTTCGTGAGCAG-GCCCTGAGTTCTCTGTGTCCGGGTGTGGAGGG---CAGGAGGTGTGG------AGAGGGAGCAGTGCGTGTGTGAGCTAGTACAC----AGAAGACGTGTGTGGCAGGCTCTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3431879 162 - 107702431 AGACTGCAGAACAACCGTAGTGCAAAGCTGACACTCATTTCCCTCCTAGGCG-CTTCGTGAGCAG-GCCCTGAGTTCTC--TGTCCGGGCGTGGAGGG---CAGGAGGTGTGG------AGAGGGAGCAGTGCGTGTGTGAGCTAGTACAC----AGAAGACGTGTGTGGCAGGCTTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 966526 164 + 1565135 GGACTGCAGAACAACCGTAGTGCAAAGCTGACACTCATTTCCCTCCTAGGCG-CTTCGTGAGCAG-GCCCTGAGTTCTCTGTGTCCGGGCGTGGAGGG---CAGGAGGTGTGG------AGAGGGAGCAGTGCGTGTGTGAGCTAGTACAC----AGAAGACGTGTGTGGCAGGCTCTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3337715 164 - 13651311 GGACTGCAGAACAACCGTAGTGCAAAGCTGAGACTCATTTCCCTCCTAGGCG-CTTCGTGAGCAG-GCCCTGAGTTCTCTGTGTCCGGGCGTGGAGTG---CAGGAGGCGTGG------AGAGGGAGCAGTGCGTGTGTGAGCTAGTACAC----AGAATAAGTGTGTGGCAGGCTCTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430222 160 - 108792865 GGACAGCAGAGCAACTTCAGGGCAAAGCTGAG-CTCGTTTCCCTCCCAGGCG-CTTCATGAGCAG-GGCCCGAGTTTCCTGTGTCCTGGCGTGGAGTG---CAGGAGGTGCAG------AGAGGGTGTGGCACGTGTGTGAGTTAGGGTGC----AGAA---GCGTGTGGCAGGCCCGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3084585 160 - 7082604 GGACAGCAGAGCAACTTTTGGGCAAAGCTGAG-TTCATTTCCCTCCCAGGCG-CTTCATGAGCAG-GGCCCGAGTTTCCCGTGTCCTGGCGTGGAGTG---CAGGAGGTGCAG------AGAGGGCGCAGCACGTGTGTGAGTTAGTGTGT----GGAA---GTGTGTGGCAGGCCCGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 570325 160 + 5243153 GGAGAGCAGAGCAACTTTAGGGCAAAGCTGAG-CTCATTTCCCTCCCAGGCG-TTTCATGAGCAG-GGCCCGAGTTTCCTGTGTCCTGGCGTGGAGTG---CAGGAGGTGCAG------AGAGGGCGAGGCACCTGTGTGAGTTAGTGTGC----AGAA---GTGTGTGGCAGGCCCGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1903556 160 - 1938448 GGACAGCAGAGCAACTTTGGGGCAAAGCTGAG-CTCGTTTCCCTCCTAGGCG-CTTCACGAGCAG-GGCCCGAGTTTCCTGTGTCCTGGCATGGACTG---CAGGAGGTGCAG------AGAGGGCGCGGCACGTGTGTGAGTTAGGGTGC----AGAA---GTGTGTGGCAGGCCCGA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2511520 147 + 5252280 GGACAGCAGAGCTCTGGCAGTGTCACGTGGAGAATC------------------TTCACTAACAGAGGCCCATGTTCTCTGTGTCCTTGCTTGCCATG----AGGAGACG-GC------AGAGGGAGGAGTGCACACGGGAGTTAGCGTACCTCTGGAG---GCCTGAGACGTGCTCTG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2019940 174 + 64289059 GGCCTGCAGGGCTACTGTCAGGAGAAGCCAGGGATGGATCTCCACCCAGGGGCCCTCAGCAGCAG-CGCCTGTCCTCTCTGGGTCCTTACTTAGGGTCTTCCGGGCAGCGCAGGGTGCCAGCAGGAGCAGCATGTGCCTGAGTTAGTACCT----AAGAGAGGGGGGCGGTGCGCTCCA i canFam3.chr17 I 70 I 315 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I a score=183738.000000 s hg38.chr2_KI270769v1_alt 30914 17 + 120616 CCACACGTTTTTAAAAT s panTro5.chr2A 3483220 17 + 111504155 CCACACATTTTTAAAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353414 17 + 114371477 CCACACATTTTTAAAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 229003 17 + 637652 CCACACATTTTTAAAAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024466 17 + 81552678 CCACACATTTTTAAAAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3286944 17 + 108979918 CCACACATTTTTAAAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4999711 17 - 111193037 CCACACATTTTTAAAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3394481 17 + 3644372 CCACACATTTTTAAAAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3349132 17 - 10304083 CCACACATTTTTAAAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3432041 17 - 107702431 CCACACATGTTTAAAAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 966690 17 + 1565135 CCACACATTTTTAAAAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3337879 17 - 13651311 CCACACATTTTTAAAAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430382 17 - 108792865 CCACACGTTTTTAAAAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3084745 17 - 7082604 CCACACGTTTTTAAAAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 570485 17 + 5243153 CCACACGTTTTTAAAAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1903716 17 - 1938448 CCACACGTTTTGAAAAT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2511667 16 + 5252280 ATGCACATTTTT-AAGT i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e canFam3.chr17 2020114 315 + 64289059 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I a score=131814.000000 s hg38.chr2_KI270769v1_alt 30931 12 + 120616 ATGTAAACTCCT s panTro5.chr2A 3483237 12 + 111504155 ATGTAAACTCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353431 12 + 114371477 ATGTAAACTCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 229020 12 + 637652 ATGTAAACTCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024483 12 + 81552678 ATGTAAACTCCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3286961 12 + 108979918 ATGTAAACTCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4999728 12 - 111193037 ATGTAAACTCCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3394498 12 + 3644372 ATGTAAACTCCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3349149 12 - 10304083 ATGTAAACTCCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3432058 12 - 107702431 ATGTAAACTCCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 966707 12 + 1565135 ATGTAAACTCCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3337896 12 - 13651311 ATGTAAACTCCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430399 12 - 108792865 ACACAAACTCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3084762 12 - 7082604 ACACAAACTCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 570502 12 + 5243153 ACACAAACTCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1903733 12 - 1938448 ACACAAACTCTT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2511683 12 + 5252280 ATGGAAACTCCC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2020429 12 + 64289059 ACGCACACTCCC i canFam3.chr17 I 315 C 0 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91402425 3245 - 120129022 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I a score=2116354.000000 s hg38.chr2_KI270769v1_alt 30943 211 + 120616 -AAACTTCTTGTCAGAGAAGCGCTTGGCATGCACACAAAATCATTTAGCTAATTCTTGAGAAACATATTGTTTAA-TTGTCTGTCTCCCTTGCTAGATCATACCACTAATGAGTGC-------------TCGTTCACTAAC-CTC----CCCGCCAGCCTTG---CAGTCTCTGTCAGGCAGGAGGTACTTAAAGCATGTTTATTGACTGGCTGCAGAAATGAGGACATCTACC s panTro5.chr2A 3483249 211 + 111504155 -AAACTTCTTGTCAGAGAAGCGCTTGGCATGCACACAAAATCATTTAGCTAATTCTTGAGAAACATATTGTTTAA-TTGTCTGTCTCCCTTGCTAGATCATACCACTAATGAGTGC-------------TCGTTCACTAAC-CTC----CCCGCCAGCCTTG---CAGTCTCTGTCAGGCAGGAGGTACTTAAAGCATGTTTATTGACTGGCTGCAGAAATGAGGACATCTACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353443 211 + 114371477 -AAACTTCTTGTCAGAGAAGCGCTTGGCATGCACACAAAATCATTTAGCTAATTCTTGAGAAACATATTGTTTAA-TTGTCTGTCTCCCTTGCTAGATCATACCACTAATGAGTGC-------------TCGTTCACTAAC-CTC----CCCGCCAGCCTTG---CAGTCTCTGTCAGGCAGGAGGTACTTAAAGCATGTTTATTGACTGGCTGCAGAAATGAGGACATCTACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 229032 211 + 637652 -AAACTTCTTGTCAGAGAAGCGCTTGGCATGCACACAAAATCATTTAGCTAATTCTTGAGAAACACATTGTTTAA-TTGTCTGTCTCCCTTGCTAGATCATACCACTAATGAGTGC-------------TCGTTCACTAAC-CTC----CCCGCCAGCCTTG---CAGTCTCTGTCAGGCAGGAGGTACTTAAAGCATGTTTATTGACTGGCTGCAGAAATGAGGACATCTACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024495 211 + 81552678 -AAACTTCTTGTCAGAGAAGCGCTTGGCATGCACACAAAATCATTTAGCTAATTCTTGAGAAACATATTGTTTAA-TTGTCTGTCTCCCTTGCTAGATCATACCACTAATGAGTGC-------------CTGTTCACTAAC-CTC----CCCACCAGCCTTG---CGGTCTCTGTCAGGCAGGAGGTACTTAAAGCATGTTTATTGACTGGCTGCAGAAATAAGGACATCTACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3286973 210 + 108979918 -AAACTTCTTGTCAGAGAAGTGCTTGGCATGCACACAAAATCATTTAGCTAATTTTTGAGAAACATATTGTTTAA-TTGTCTGTCTCCCTTGCTAGATCAT-CCACTAATGAGTGC-------------TCGTTCACTAAC-CTC----CCCGCCAGCCTTG---CAGTCTCTGTCAGGCAGGAAGTACTTAAAGCATGTTTACTGACTGGCTGCAGAAATGAGGACATCTACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4999740 210 - 111193037 -AAACTTCTTGTCAGAGAACTGCTTGGCATGCACACAAAATCATTTAGCTAATTTTTGAGAAACATATTGTTTAA-TTGTCTGTCTCCCTTGCTAGATCAT-CCACTAATGAGTGC-------------TCGTTCACTAAC-CTC----CCCGCCAGCCTTG---CAGTCTCTGTCAGGCAGGAAGTACTTAAAGCATGTTTACTGACTGGCTGCAGAAATGAGGACATCTACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3394510 210 + 3644372 -AAACTTCTTGTCAGAGAAGTGCTTGGCATGCACACAAAATCATTTAGCTAATTTTTGAGAAACATATTGTTTAA-TTGTCTGTCTCCCTTGCTAGATCAT-CCACTAATGAGTGC-------------TCGTTCACTAAC-CTC----CCCGCCAGCCTTG---CAGTCTCTGTCAGGCAGGAAGTACTTAAAGCATGTTTACTGACTGGCTGCAGAAATGAGGACATCTACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3349161 210 - 10304083 -AAACTTCTTGTCAGAGAAGTGCTTGGCATACACACAAAATCATTTAGCTAATTTTTGAGAAACATATTGTTTAA-TTGTCTGTCTCCCTTGCTAGATCAT-CCACTAATGAGTGC-------------TCGTTCACTAAC-CTC----CCCGCCAGCCTTG---CAGTCTCTGTCAGGCAGGAAGTACTTAAAGCATGTTTACTGACTGGCTGCAGAAATGAGGACATCTACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3432070 208 - 107702431 -ACACTTCTTGTCAGAGAAGTGCTTGGCATGCACATAAAATCATTTAGCTAATTCTTGAGAAACATATTGTTTAA-TTGTCTGTCTCCCTTGCTAGATCAT-CCACTAATGAGTGC-------------TCGTTCACTAAC-CTC----CCCGCCAGCCTTG---CAGTCTTTGTCAGACAGGAAGTACTTAAAGCATGTTTATTGACTG--TGCAGAAATGAGGACATCTACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 966719 210 + 1565135 -AAACTTCTTGTCAGAGAAGTGCTTGGCATGCACACAAAATCATTTAGCTAATTTTTGAGAAACATATTGTTTAA-TTGTCTGTCTCCCTTGCTAGATCAT-CCACTAATGAGTGC-------------TCGTTCACTAAC-CTC----CCCGCCAGCCTTG---CAGTCTCTGTCAGGCAGGAAGTACTTAAAGCATGTTTACTGACTGGCTGCAGAAATGAGGACATCTACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3337908 211 - 13651311 -AAACTTCTTGTCAGAGAAGTGCTTGGCATGCACACAAAATCATTTAGCTAATTCTTGAGAAACATATTGTTTAATTTGTCTGTCTCCCTTGCTAGATCAT-CCACTAATGAGTGC-------------TCATTCACTAAC-CTC----CCTGCCAGCCTGG---CAGTCTCTGTCAGGCAGGAGGTACTTAAAGCATGTTTATTGACTGGCTGCAGAAATGAGGACATCTACA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430411 220 - 108792865 -AAACTTCTTGTCAGAGAAGCGCTTGGCATGCACATAAAATCACTGAGTGAATTCTTGAGAAACATATTGT-----CTGTCTGTGTCCCTCGCTGAGTCATACCGCTAATGAGTGCCCAGACACAGCATTCATTCACCAAC-CTC----CCCACCAGCCTTG---CGGCCTCTGCCAGGCAGGAGGTACTTAAAGCCTGGTTACCGACTGGCTACAGAAACGAGGACATCTACA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3084774 220 - 7082604 -AAACTTCTTGTCAGAGAAGCGCTTGGCACACACACAAAATCATTGAGTGAATTCTTGAGAAACATATTGT-----Ttgtctgtctccctcactggatcgtaccactactgagtgcaaggacacagcgttcattcagtaac-ctc----cccaccagccttg---cggcctctgccaggcaggaggtgcttaaagcttgtttactgactgGCTGCAGAAACGAGGACATGTACA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 570514 220 + 5243153 -AAACTTCTTGTCAGAGAAGCGCTTGGCATGCATACAAAATCATTGAGTGAATTCTTGAGAAACGTATTGT-----TTGTCTGCCTCCCTCACTGGATCATACCACTAATGAGTGCAAGGACACAGCGTTCATTCACTAAC-CTC----CCCACCAGCCTTG---TGGCCTCTGCCAGGCAGGAATTGCTTAAAGCTTATTTACTGACTGGCCGCAGAAACGAGGACATCTACA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1903745 220 - 1938448 -AAACTTCTTGTCAGAGAAGCACTTGGCGTGCACACAAAATCATTGAGTGAATTCTTGAGAAACATATTGT-----Ttgtctgtctccctcgctggatcataccactaatgagtgcaaggacacagcgttcattcagcaac-ctc----cccagcagcctcg---aggcttctgccaggcaggaggtgcttaaagcctgtttactgactgGCCGCAGAAACAGGGACGTCTACA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2511695 197 + 5252280 -AAACTTATTGCTAAAGAAGCACTTGGC-TAGGCACAAAACTACTTCATCAATCCTTGAGAAACAC-CTGTTTAA--CATCTGTCTTCCTTGCTACA-----TGGCTGTCGAGTCT-GGGACATGGCGTTCATTCATGCACACTCTGCACCCAGCAACCCCG---C----------------------CTTGAAGCCTGTGTGTTGGCCGCCTGC-GTGCTGGGCACGTCAGCA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91405670 152 - 120129022 -AAACTTCTTGTTAAA----------GCTTATGCACATGGTCGTTCCATCCATCCCTGGAAGGCAT------CGA-ATGCCCATCCTCCTTGCAAGATCCCAGTAGTAACGAGG---------------TCATTCACGACT-TTG----TCCA--------------------------TAGCAACTGTTGGCAGCCTGTTTGTTGACTGACT-------------CAT----- i mm10.chr12 I 3245 C 0 s canFam3.chr17 2020441 202 + 64289059 ATGGCCTCTTGTTCAAAAAGCACTGTGAGTACACGCAAAATTATTTCACTCATCTTTGAAAAAAAA--tgtttcg--tatctgccttccttgctagatcgtgagatgagtgcatgc-aaggaggtgtgtccctccaccact-ttg----ccctccgagcctgacacggTCCCCACCA----------------------TGTGTTGGCCACACCCGTGAACATGTGCATCTGCA i canFam3.chr17 C 0 C 0 e micMur3.chr8 2623379 1768 - 159902609 I e proCoq1.NW_012151163v1 936255 1698 + 1238772 I e dasNov3.JH580157 529314 10636 + 2232271 I a score=21917.000000 s hg38.chr2_KI270769v1_alt 31154 3 + 120616 GTA s panTro5.chr2A 3483460 3 + 111504155 GTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353654 3 + 114371477 GTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 229243 3 + 637652 GTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024706 3 + 81552678 ATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3287183 3 + 108979918 GTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4999950 3 - 111193037 GTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3394720 3 + 3644372 GTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3349371 3 - 10304083 GTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3432278 3 - 107702431 GTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 966929 3 + 1565135 GTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3338119 3 - 13651311 GTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430631 3 - 108792865 GGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3084994 3 - 7082604 GGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 570734 3 + 5243153 GGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1903965 3 - 1938448 GGG i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 937953 3 + 1238772 GTA i proCoq1.NW_012151163v1 I 1698 C 0 s otoGar3.GL873658 2511892 3 + 5252280 GCA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2020643 3 + 64289059 GCG i canFam3.chr17 C 0 C 0 e micMur3.chr8 2623379 1768 - 159902609 I e mm10.chr12 91405822 0 - 120129022 C e dasNov3.JH580157 529314 10636 + 2232271 I a score=347220.000000 s hg38.chr2_KI270769v1_alt 31157 38 + 120616 TTCAAAGA----TAGTGCCCGTTACATTGAGAA----AAG-ACAGAG s panTro5.chr2A 3483463 38 + 111504155 TTCAAAGA----TAGTGCCCGTTACATTGAGAA----AAG-ACAGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353657 38 + 114371477 TTCAAAGA----TAGTGCCCGTTACATTGAGAA----AAG-ACAGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 229246 38 + 637652 TTCAAAGA----TAGTGCCCGTTACGTTGAGAA----AAG-ACAGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024709 38 + 81552678 TTCAAAGA----TAGCGCCCGTTACGTTGAGGA----AAG-ACAGAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3287186 38 + 108979918 TTCAAAGA----TAGTGCCCATTACCTTGAGAA----AAG-ACAGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4999953 38 - 111193037 TTCAAAGA----TAGTGCCCATTACCTTGAGAA----AAG-ACAGAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3394723 38 + 3644372 TTCAAAGA----TAGTGCCCATTACCTTGAGAA----AAG-ACAGAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3349374 38 - 10304083 TTCAAAGA----TAGTGCCCATTACCTTGAGAA----AAG-ACAGAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3432281 38 - 107702431 TTCAAAGA----TAGTGCCCATTACCTTGAGAA----AAG-ACAGAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 966932 38 + 1565135 TTCAAAGA----TAGTGCCCGTTACCTTGAGAA----AAG-ACAGAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3338122 38 - 13651311 TTCAAAGA----TAGTGCCCATTACCTTGAGAA----AAG-ACAGAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430634 36 - 108792865 TTCGAAGA----CAGTGCCTGTTACGTTGAGAA----AAG-AC--AG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3084997 36 - 7082604 TGTGACAA----CAGTGCCTGTTACATTGAGAA----AAG-AC--GG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 570737 34 + 5243153 TTCGAAGA----CAGTGCCTGTTACATTGAG------AAG-AC--AG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1903968 36 - 1938448 TTTGAAGA----CAGTGCCTGTTACATTGAGAA----AAG-AC--AG i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 937956 37 + 1238772 TTCAAAGA----TAGTGCCTGTTATATTGAGAA----AAATACAT-- i proCoq1.NW_012151163v1 C 0 I 2 s otoGar3.GL873658 2511895 37 + 5252280 CGCACAGG----TGGCGCCTGTGGTGTTCAGAA----AGGCACCC-- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91405822 26 - 120129022 --------------GTGCCGGTTGTGTTGAGAATCATGTG------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2020646 43 + 64289059 TCCACAGGGAGTTAGTGCCTGGCTTGCCAAGGAGGT-GGG-TCAG-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 539950 38 + 2232271 tttaaaaa----GAGTGCCTATTGTATTGAGCA----AAC-ATACAT i dasNov3.JH580157 I 10636 C 0 e micMur3.chr8 2623379 1768 - 159902609 I a score=620152.000000 s hg38.chr2_KI270769v1_alt 31195 41 + 120616 TGAG----CATCCACTTTTAGCTTCTTAAA-AGGTTTAAACATTCT s panTro5.chr2A 3483501 41 + 111504155 TGAG----CATCCACTTTTAGCTTCTTAAA-AGGTTTAAACATTCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353695 41 + 114371477 TGAG----CATCCACTTTTAGCTTCTTAAA-AGGTTTAAACATTCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 229284 41 + 637652 TGAG----CATCCACTTTTAGCTTCTTAAA-AGGTTTAAACATTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024747 41 + 81552678 TGAG----CATCCACTTTTAGCTTCTTAAA-AGGTTCAAACATTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3287224 41 + 108979918 TGAG----CATCCACTTTTAGCTTCTGAAA-AGGTTTAAACATTCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 4999991 41 - 111193037 TGAG----CATCCACTTTTAGCTTCTGAAA-AGGTTTAAACATTCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3394761 41 + 3644372 TGAG----CATCCACTTTCAGCTTCTTAAA-AGGTTTAAACATTCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3349412 41 - 10304083 TGAG----CATCCGCTTGTAGCTTCTTAAA-AGGTTTAAACATTCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3432319 41 - 107702431 TGAG----CATCCACTGTTAGCTTCTTAAA-AGGTTTAAACATTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 966970 41 + 1565135 TGAG----CATCCACTTTTAGCTTCTTAAA-AGGTTTAAACATTCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3338160 41 - 13651311 TGAG----CATCCACTTTTAGCTTCTTAAA-AGGTTTAAACATTCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430670 45 - 108792865 TGAGCATCCATCCACTTTGAGCTTCTTAGA-AGGTTTAAACATTCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085033 41 - 7082604 TGAG----TGTCCACTTTTAGCTTCTTAAA-AGGTTTAAACATTCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 570771 41 + 5243153 TGAG----CATCTACTTTTAGCTTCCTAAA-AGGTTTAACCATTCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904004 41 - 1938448 TGAG----CGTCCACTTTTAGCTTCTTAAA-AGGTTTAAACATTCT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2625147 41 - 159902609 TGAG----TATCCAGTTCTAGCTTCTTAAA-AGACTTAAACATTCT i micMur3.chr8 I 1768 I 255 s proCoq1.NW_012151163v1 937995 41 + 1238772 TGAG----TATCCAGTTCTAGCTTCTTAAA-AGATGTAGACATTCT i proCoq1.NW_012151163v1 I 2 I 212 s otoGar3.GL873658 2511932 39 + 5252280 TGAG----CATCCACTGTGAGC-CCTTACA-GGGTCTA-ACACTCT i otoGar3.GL873658 C 0 I 7 s mm10.chr12 91405848 36 - 120129022 TGAG----GATC---TTTTAGTTCCTGAAA-GGGTTGAAACACT-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2020689 40 + 64289059 -GAG----CTTCTCCTTCTCGCCTCTTAGA-AGGCTGCAGCGTTCT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 539988 42 + 2232271 TTAA----CATCTGTTTCTAGCTCCTTAAAGAGGTTAAAACATTCT i dasNov3.JH580157 C 0 I 4 a score=684230.000000 s hg38.chr2_KI270769v1_alt 31236 70 + 120616 GATCTTATTTTCCCATTCATTTGCCTAATGGCTGTCCTTTCTGTATTGCACAAGGGCAAA--GAT-AAACACA-- s panTro5.chr2A 3483542 70 + 111504155 GATCTTATTTTCCCATTCATTTGCCTGATGGCCATCCTTTCTGTATTGCACAAGGGCAAA--GAT-AAACACA-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353736 70 + 114371477 GATCTTATTTTCCCATTCATTTGCCTGATGGCCGTCCTTTCTGTATTGCACAAGGGCAAA--GAT-AAACACA-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 229325 69 + 637652 GATCTTATTTT-CCATTCATTTGCCTAATGGCCGTCCTTTCTCTATTGCACAAGGGCAAA--GAT-AAACACA-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024788 70 + 81552678 GATCTTATTTTCCCATTCATTTGCCTGATGGCCGTCCTTTCTGTATTGCACGAGGGCAAA--GAT-AAACACA-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3287265 70 + 108979918 GACCTTTTTTTCCCATTCATTTCTCTAACGGCTGTCCTTTCTGCATTGCACAAGGGCAAA--GAT-AAACACA-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000032 70 - 111193037 GACCTTTTTTTCCCATTCATTTCTCTAACGGCTGTCCTTTCTGCATTGCACAAGGGCAAA--GAT-AAACACA-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3394802 70 + 3644372 GACCTTTTTTTCCCATTCATTTCTCTAACGGCTGTCCTTTCTGCATTGCACAAGGGCAAA--GAT-AAACACA-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3349453 70 - 10304083 GACCTTATTTTCCCATTCATTTCTCTAACGACTGTCCTTTCTGCATTGCACAAGGGCAAA--GAT-AAACACA-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3432360 70 - 107702431 GACCTTATTTTCCCATTCATTTCTCTAACAGCTGTCCTTTCTGCCTTGCACAAGGGCAAA--GAT-AAACACA-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967011 70 + 1565135 GACCTTATTTTCCCATTCATTTCTCTAACGGCTGTCCTTTCTGCATTGCACAAGGACAAA--GAT-AAACACA-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3338201 71 - 13651311 AACCTTATTTTCCCATTCATTTGCCTAACGGCCGTCCTTTCTGTATCACACAAGGGCAAA--GATAAAACACA-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430715 70 - 108792865 GATCTTATTTGCCCATTCATTTGCCTAATGGCCCTCCCTTCTCTCTTGCATAAGGGCGGG--GGT-AAACACA-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085074 70 - 7082604 GATCTTATTTTCCCATTCATTTGCCTAATGGCCCTCCCTTTTCTGTTGCATAAGGGTGGA--GAT-AAACACA-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 570812 70 + 5243153 GATCTTATTTTCCCATTCGTTTGCCTAATGGCCCTCCCTTCTCTGTTGCATAAGGGCAGA--GAT-AAACACA-- i cebCap1.NW_016107454v1 C 0 I 91 s aotNan1.NW_018507213v1 1904045 70 - 1938448 GATCTTATTTTCCCATTCATTTGCCTAATGGCCCTCCCTTCTCTGTTGCATAAGGGCAGA--GAT-AAACACA-- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2511978 51 + 5252280 GATGTGTGTTTCCCACTCA-------------------CTCCCTGGGGCACCAGGGCAGA--GAT-CAGGATG-- i otoGar3.GL873658 I 7 I 2 s mm10.chr12 91405884 50 - 120129022 GA---TGTTGTCCTGAAGAACTACTTTGTGA---TTCCTTTGTTACTGTACAGGGG------------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2020729 69 + 64289059 CTCCGAAGTTTTCACGTCATTTCCCTGGTGGCG---CCGTGTCTGTTGTATCAGGGCAAAAGGGT-AAACTCA-- i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 540034 72 + 2232271 GATAATATTTTCCCATTCATTTGCCTAATAGCCCTTCTTTCTTTATTGCATAAGGCCAAA--GGT-AAACACTAG i dasNov3.JH580157 I 4 C 0 e micMur3.chr8 2625188 255 - 159902609 I e proCoq1.NW_012151163v1 938036 212 + 1238772 I a score=656664.000000 s hg38.chr2_KI270769v1_alt 31306 89 + 120616 AGAGTCTGTACGAATCAGCCAGTGTGTCAGTACCAGCCAGCCTTTCCAT-GTTGAAGCCGTAACGTTAAGTGATGTGAAAG---TATACTGTG s panTro5.chr2A 3483612 89 + 111504155 AGAGTCTGTATGAATCAGCCAGTGTGTCAGTACCAGCCAGCCTTTCCAT-GTTGAAGCCGTAACGTTAAGTGATGTGAAAG---TATACTGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353806 89 + 114371477 AGAGTCTGTATGAATCAGCCAGTGTGTCAGTACCAGCCAGCCTTTCCAT-GTTGAAGCCGTAACGTTAAGTGATGTGAAAG---TATACTGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 229394 89 + 637652 AGAGTCTGTACGAATCAGCCAGTGTGTCAGTACCAGCCAGCCTTTCCAT-GTTGAAGCTGTAACGTTAAGCAATGTGAAAG---TATACCGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024858 89 + 81552678 GGAGTCTGCGCGAATCAGCCAGTGTGTCAGTACCAGCCAGCCTTTCCAT-GTTGAAGCCATAACGTTAAGCGATGTGAAAG---TATACCATG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3287335 89 + 108979918 GAAGTCTGTACGAATCAGCCAGCGTGGCGGTACCAGCCAGCCCTTCCGT-GTTGAAGCCATAACGTTACGCGATGTGAAAG---TATGCCGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000102 89 - 111193037 GAAGTCTGTACGAATCAGCCAGCGTGGCGGTACCAGCCAGCCCTTCCGT-GTTGAAGCCGTAACGTTACGCGATGTGAAAG---TATGCCGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3394872 89 + 3644372 GAAGTCTGTACGAATCAGCCAGCGTGGCGGTACCAGCCAGCCCTTCCGT-GTTGAAGCCGTAACGTTACGCGATGTGAAAG---TATGCCGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3349523 89 - 10304083 GAAGTCTGTACGAATCAGCCAGCGTGGCGGTACCAGCCAGCCCTTCCGT-GTTGAAGCCGTAACATTACGCGATGTGAAAG---TATGCCGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3432430 89 - 107702431 GGAGTCTATACGAATCAGCCAGCGTGGCGGTACCAGCCAGCCTTTCCGT-GTTGAAGCCGTAACGTTACGCGATGTGAAAG---TATGTCGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967081 89 + 1565135 GAAGTCTGTACGAATCAGCCAGCGTGGCGGTACCAGCCAGCCCTTCCGT-GTTGAAGCCGTAACATTACGCGATGTGAAAG---TATGCCGTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3338272 89 - 13651311 GGAGTCTATATGAATCAGCCAGTGTGTCGGTACCAGCCAGCCTTTCCGT-GCTGAAGCCGTAACGTTAAGCGATGTGAAAG---CATGCCGTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430785 89 - 108792865 AGAGTCTGCAGGAACCCGCCAGTTTGTCGGTAGCAGCCCGCCTTCCCGC-GGTGGAAGCGTAATGTTTACGGGTGGGAACG---TCCGCTGTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085144 88 - 7082604 GGAGTCTACAGGACCCCGCCAGTGTGTCAGTAGCAGCCCGCCTTCCCGC--ATGGAAGCGTAATGTTTATTGGTGGGAAAG---TCCGCTGCA i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1904115 89 - 1938448 GGTGTCTACGGGAACCCGCCAGTTTGTCGGCAGCAGCCCGCCTTCCCAC-AGTGGAAGCGTAATGTTTACTGGTGGGAAAG---TCCGCTGTG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2512031 75 + 5252280 AGGGTCCGACTGAGCACA---------CGGCACCAGCCAGC----CCAG-GTTGAAGCTCCAGCATGAAGTGACTTGAA-G---AAGCCTGTG i otoGar3.GL873658 I 2 C 0 s mm10.chr12 91405934 83 - 120129022 AGAGCCTGAGCAAATGAGTCGTTGCCCTTGT---TACCAGCCTTTCCAT-------GCCTCAGGTTTTGACTGGATGAAGGAGATGTGCTGTG i mm10.chr12 C 0 C 0 s canFam3.chr17 2020799 45 + 64289059 CAAGTCCAACTTGATCAGCCAGCGTGTCTGGATAGGCCGTCTTTT------------------------------------------------ i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 540106 90 + 2232271 AGAGTCCAAATTAATGAGCCAGTATGCCGATGTCAGCTAGGCTTCCTGTAGTTCAAGTTAAAAGATGAAGTAATCTGAAAG---TAGGCTCTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625188 255 - 159902609 I e proCoq1.NW_012151163v1 938036 212 + 1238772 I e cebCap1.NW_016107454v1 570882 91 + 5243153 I a score=543980.000000 s hg38.chr2_KI270769v1_alt 31395 47 + 120616 CATTGCCA--CACGGGCCTGGAACATGTTGTGTTCACCCAGTTCATTGA s panTro5.chr2A 3483701 47 + 111504155 CATTGCCA--CACGGGCCTGGAACATGTTGTGTTCACCCAGTTCATTGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353895 47 + 114371477 CATTGCCA--CATGGGCCTGGAACATGTTGTGTTCACCCAGTTCATTGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 229483 47 + 637652 CATTGCCA--CACAGGCCTGGAACATGTTGTGTTCACCCAGTTCATTGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024947 47 + 81552678 CATTGCCA--CGTGGGCCTGGAACATGTTGTGTTCACCCAGTTCATTGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3287424 47 + 108979918 CATTGCCA--CATGGGCCTGGAACATGTTGTGTTCACATAGTTCATTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000191 47 - 111193037 CATTGCCA--CATGGGCCTGGAACATGTTGTGTTCACATAGTTCATTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3394961 47 + 3644372 CATTGCCA--CATGGGCCTGGAACATGTTGTGTTCACATAGTTCATTGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3349612 47 - 10304083 CATTGCCA--CATGGGCCTGGAACATGTTGTGTTCACATAGTTCATTGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3432519 47 - 107702431 CATTGCCA--CATGGGCCTGGAACATGTTGTGTTCACATAGTTCATTGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967170 47 + 1565135 CATTGCCA--CATGGGCCTGGAACATGTTGTGTTCACATAGTTCATTGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3338361 47 - 13651311 CATTGCCA--CATGGGCCTGGAACAGGTTGTGTTCACATAGTTCACTGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430874 47 - 108792865 CATTGCCA--CATGGGCCTGGAACATGTTGTGTTCACATAGTTCATTGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085232 47 - 7082604 TGTTGCCA--CGTGGGCCTGGAACATGTTGTGTTCACATAGTTCATTGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 570973 47 + 5243153 CGTTGCCA--CTTGGGCCTGGAACATGTTGTGTTCACATAGTTCATTGA i cebCap1.NW_016107454v1 I 91 C 0 s aotNan1.NW_018507213v1 1904204 47 - 1938448 CATTGCCA--CATGGGCCTGGAACGTGTTGTGTCCACATAGTTCATTGA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2512106 46 + 5252280 ---TGTCAACCACTGGCCTGTGACAAGTGGCTTTAGCACAGTTCTTTTT i otoGar3.GL873658 C 0 I 2 s mm10.chr12 91406017 35 - 120129022 --TTGGTG--GGCAGTCCT----------GCCTTCGCCCAGTTCACCGA i mm10.chr12 C 0 C 0 s dasNov3.JH580157 540196 47 + 2232271 TATTGAAG--GATTGACCTTTAACATGTTGTATTAGCATAATTCATTGA i dasNov3.JH580157 C 0 I 1 e micMur3.chr8 2625188 255 - 159902609 I e canFam3.chr17 2020844 0 + 64289059 C e proCoq1.NW_012151163v1 938036 212 + 1238772 I a score=556519.000000 s hg38.chr2_KI270769v1_alt 31442 49 + 120616 TT-TTTTCATATTGATAAATTAAAATTA---TG---AACATAT-AAAGCCAGTTATT s panTro5.chr2A 3483748 49 + 111504155 TT-TTTTCATATTGATAAATTAGAATTA---TG---AACATAT-AAAGCCAGTTATT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353942 49 + 114371477 TT-TTTTCATATTGATAAATTAGAATTA---TG---AACATAT-AAAGCCAGTTATT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 229530 49 + 637652 TT-TTTTCATATTGATAAATTAGAATTA---TG---AACATAT-AAAGCCAGTTATT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3024994 49 + 81552678 TT-TTTTCATATTGATAAATTAGAATTA---GG---GACATAT-AAAGCCACTTATT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3287471 49 + 108979918 TT-TTTTCATATTGATAAATTAGAATTA---TG---AACATAG-AAAGCCACTTATT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000238 49 - 111193037 TT-TTTTCATATTGATAAATTAGAATTA---TG---AACATAG-AAAGCCACTTATT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395008 49 + 3644372 TT-TTTTCATATTGATAAATTAGAATTA---TG---AACATAG-AAAGCCACTTATT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3349659 49 - 10304083 TT-TTTTCATATTGATAAATTAGAATTA---TG---AACATAG-AAAGCCACTTATT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3432566 49 - 107702431 TT-TTTTCATATTGATAAATTAGAATTA---TG---AACATAT-AAAGCCACTTATT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967217 49 + 1565135 TT-TTTTCATATTGATAAATTAGAATTA---TG---AACATAG-AAAGCCACTTATT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3338408 49 - 13651311 TT-TTTTCATATTAATAAATTAGAATTA---TG---AACATAT-AAAGCCACTTACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430921 45 - 108792865 TTTTTTTCATATTGATAAATTAGAATCA---TG---AACATAT-AGAGCC-----TT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085279 45 - 7082604 TTTTTTTCATATTGATAAATTAGAATTA---TG---AATATAT-AGAGCT-----TC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571020 45 + 5243153 TTGTTTCCATATTGATAAATTAGAATTA---TG---AACATAT-AGAGCC-----CC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904251 44 - 1938448 TTTTTTTCATATTGATAAATTAGAATTA---TG---AACAT-T-AGAGCC-----TC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 938248 47 + 1238772 TT-TTTTCATATTGGTAAATTAGAATTATGTTG---AACATAT-AAAACCAC----- i proCoq1.NW_012151163v1 I 212 C 0 s otoGar3.GL873658 2512154 49 + 5252280 TA-TGTTCATATTGGTAAGTTAGGATTACATTG---AAC--AT-AAAACCACTTAC- i otoGar3.GL873658 I 2 C 0 s mm10.chr12 91406052 45 - 120129022 --------CTATTGAGGAAGTAGAATTGTGCTG---AACATAT-AAGACGCCATATT i mm10.chr12 C 0 C 0 s canFam3.chr17 2020844 49 + 64289059 ----TTTTATATTGGTAAAGTAGGATTA---TGCCAAGCATTT-GAAACCGCTTATT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 540244 53 + 2232271 TT-TTTTCACATTGATAAAATAGAATTA---TGTTAAACATGTAAAAACCACTTATT i dasNov3.JH580157 I 1 C 0 e micMur3.chr8 2625188 255 - 159902609 I a score=877130.000000 s hg38.chr2_KI270769v1_alt 31491 61 + 120616 TTAGAGTCATATGCAAATCTTACAGATACAA-AT-AAATATGTCCAACACA--TAGCATAAAATT s panTro5.chr2A 3483797 61 + 111504155 TTAGAGTCATATGCAAATCTTACAGATACAA-AT-AAATATGTCCAACACA--TAGCATAAAATT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3353991 61 + 114371477 TTAGAGTCATATGCAAATCTTACAGATACAA-AT-AAATATGTCCAACACA--TAGCATAAAATT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 229579 61 + 637652 TTAGAGTCATATGCAGATCTTACAGATACAA-AT-AAATATGTCCAACACA--TAGCATAAAATT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3025043 61 + 81552678 TTAGAGTCACATGCAGATCTTACAGATACAA-AT-AAATATGTCCAACACA--TGGCATAAAATT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3287520 61 + 108979918 TTATAGTCACATGCAGAGCTTACAGATACAA-AT-ACATATGTCCAACACA--TAGCATAAAATT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000287 61 - 111193037 TTATAGTCACATGCAGAGCTTACAGATACAA-AT-ACATATGTCCAACACA--TAGCATAAAATT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395057 61 + 3644372 TTATAGTCACATGCAGAGCTTACAGATACAA-AT-ACATATGTCCAACACA--TAGCATAAAATT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3349708 61 - 10304083 TTATAGTCACATGCAGAGCTTACAGATACAA-AT-ACATATGTCCAACACA--TAGCATAAAATT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3432615 61 - 107702431 TTATAGTCACATGCGGATCTTACAGATACAA-AT-ACATATGTCCAACACA--TAGCATAAAATT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967266 61 + 1565135 TTATAGTCACATGCAGAGCTTACAGATACAA-AT-ATATATGTCCAACACA--TAGCATAAAATT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3338457 61 - 13651311 TTATAGTCACATGCAGATCTTACAAATACAA-AT-ACATATGTCCAACAGA--TAGCATAAAATT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3430966 58 - 108792865 TTAGAGTCAAATGCAGATCGTACAGATGCAA-AT-AAATATATCCAACACA----GCATCAAAT- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085324 58 - 7082604 TTAGAGTCACATGCAGATCTTACAGATACAA-AT-AAATATATCCAACACA----GCATCAAAT- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571065 58 + 5243153 TTAGAGTCACATGCAGATCTTACAGATACAA-AT-AAATATATCCAACACA----GCATCAAAT- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904295 54 - 1938448 TTAGAGTCACATGCAGATCTTACAGATAC------AAATATATCCAACACA----GCATCAAAT- i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2625443 61 - 159902609 TTAGAGTCATGTGCAGATCTTACAGACACAA-AT-AAATATATCTAACATG--TAGCATAAAATT i micMur3.chr8 I 255 I 349 s proCoq1.NW_012151163v1 938295 61 + 1238772 TTAGAGTCACGTGCAGTTCTTACAGATACAA-AT-AAATATATGTAACACG--TAGCATAAAATT i proCoq1.NW_012151163v1 C 0 I 83 s otoGar3.GL873658 2512203 57 + 5252280 ----AGTCACATGCAGATCTTACAGACACCA-GA-AAATATATCTAACATA--TAGCATGAAATT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91406097 63 - 120129022 TTATAGTC-TGTGCTGCTCCTACAGACACAATAA-AAATATATCTGGCACATTTAACATAAAATT i mm10.chr12 C 0 C 0 s canFam3.chr17 2020893 59 + 64289059 TTATTGTCACA--CAGATCTTACAGATACAA-AT-GAATATATCCGGCATA--TAGCATAGAATT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 540297 62 + 2232271 TGATAGTCACTTGCAGATCTTATCATTACTA-ATAAAAAATATCAAACACC--TAGCATAAAATT i dasNov3.JH580157 C 0 C 0 a score=1015750.000000 s hg38.chr2_KI270769v1_alt 31552 111 + 120616 TCCTTATTGATTTTAAATTGACAGAAATCTTA--AGATAA-----TCTTGCT-AAAAAGGAAACCAGTCATATAGATT---------------------------------------------------GA---GAGATGTGCGGAGC---------------------------------------------------------------------------TTTCCAATAAAAAGCCT-CTTCCCGA s panTro5.chr2A 3483858 111 + 111504155 TCCTTATTGATTTTAAATTGACAGAAATCTTA--AGATAA-----TCTTGCT-AAAAAGGAAACCAGTCATATAGATT---------------------------------------------------GA---GAGATGTGCGGAGC---------------------------------------------------------------------------TTTCCAATAAAAAGCCT-CTTCCCGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354052 111 + 114371477 TCCTTATTGATTTTAAATTGACAGAAATCTTA--AGATAA-----TCTTGCT-AAAAAGGAAACCAGTCATATAGATT---------------------------------------------------GA---GAGATGTGCGGAGC---------------------------------------------------------------------------TTTCCAATAAAAAGCCT-CTTCCCGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 229640 111 + 637652 TCCTTATTGATTTTAAATTGACAGAAATCTTA--AGATAA-----TCTTGCT-AAAAAGGAAACCGGTCATGTAGATT---------------------------------------------------GA---GAGATGTGCGGAGC---------------------------------------------------------------------------TTTCCAATAAAAAGCCT-CTTCCCGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3025104 111 + 81552678 TCCTTATTGATGTTAAATTGACAGAAATCTGA--AGATAA-----TCTTGCT-AAAAAGGAAACCAGTCATATAGATT---------------------------------------------------GA---GAGATGTGTGGAGC---------------------------------------------------------------------------TTTCCAATAAAAAGCCT-CTTCCCGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3287581 109 + 108979918 TCCTTATTGATTTTAAATTGAC--AAATCTCA--AGACAA-----TCCTGCT-AAAAAGGACGCCAGTCATATAGATG---------------------------------------------------GA---GAGAGATGCGGAGC---------------------------------------------------------------------------TTTCCAATAAAAAGCCT-CTTCCCGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000348 109 - 111193037 TCCTTATTGATTTTAAATTGAC--AAATCTCA--AGACAA-----TCCTGCT-AAAAAGGACGCCAGTCATATAGATG---------------------------------------------------GA---GAGAGATGCGGAGC---------------------------------------------------------------------------TTTCCAATAAAAAGCCT-CTTCCCGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395118 109 + 3644372 TCCTTATTGATTTTAAATTGAC--AAATCTCA--AGACAA-----TCCTGCT-AAAAAGGACGCCAGTCATATAGATG---------------------------------------------------GA---GAGAGATGCGGAGC---------------------------------------------------------------------------TTTCCAATAAAAAGCCT-CTTCCCGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3349769 109 - 10304083 TCCTTATTGATTTTAAATTGAC--AAATCTCA--AAACTA-----TCCTGCT-AAAAAGGACGCCAGTCATATAGATT---------------------------------------------------GA---GAGAGATGCGGAGC---------------------------------------------------------------------------TTTCCAATAAAAAGCCT-CTTCCCGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3432676 109 - 107702431 TCCTTATTGATTTTAAATTGAC--AAATCTCA--AGACAA-----TCCTGCT-AAAAAGGACGCCAGTCATATAGATT---------------------------------------------------GG---GAGAGATGCGGAGG---------------------------------------------------------------------------TTTCCAATAAAAAGCCT-CTTCCCGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967327 109 + 1565135 TCCTTATTGATTTTAAATTGAC--AAATCTCA--AGACAA-----TCCTGCT-AAAAAGGACACCAGTCATATAGATT---------------------------------------------------GA---GAGAGATGCGGAGC---------------------------------------------------------------------------TTTCCAATAAAAAGCCT-CTTCCCGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3338518 109 - 13651311 TCCTTACTGATTTTAAATTGAC--AAATCTCA--AGACAA-----TCCTGCT-AAAAAGGAAACCAGTCATATAGATT---------------------------------------------------GA---GAGATATGCAGAGC---------------------------------------------------------------------------TTTCCAATTAAAAGCCT-CTTCCCGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3431024 106 - 108792865 ---TTATTGAT-TTAAATTGACAGAAATCACA--AGATAA-----TCTTGCT-AACAAGGAAAGCAGTCACATAGATT---------------------------------------------------GA---GAGATGTGGGGAGC---------------------------------------------------------------------------TTTCCAGTAAGAAGCC--CCTCCCAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085382 107 - 7082604 ---TTATTGATCTTAAATTGACAGAAATCACA--AGATAA-----TCTTGCT-AACAAGGAAAGCAGTCACATAGATT---------------------------------------------------GA---GAGATGTGGGGAGC---------------------------------------------------------------------------TTTCCAATAAGAAGCC--CCTCCCAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571123 107 + 5243153 ---TTATTGATCTTAAATTGACAGAAATCACA--AGATAA-----TCTTGCT-AACAAGGAAAGCAGTCACGTAGATT---------------------------------------------------GA---GAGATGAGGGGAGC---------------------------------------------------------------------------TTTCCAATAAGAAGCC--CCTCCCAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904349 104 - 1938448 ---TTATTGATCTTAAGTTGACAGAAATCACA--AGATAA-----TCTTGCT-AACGAGGAAAGCAGTCACATAGATT---------------------------------------------------GA---GAGAT---GGGAGC---------------------------------------------------------------------------TTTCCAATAAGAAGCC--CCGCCTGA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2512260 110 + 5252280 AAATTATTGACTTTAAATTGACAGAAACCATGTTGAGTAG-----TCTTGAT-AAAAAGGAGACTGGTCCC--AGACT----------------------------------------------------A---GAGTCTGGGGGAGC---------------------------------------------------------------------------TTTCCAGTACAAAGTCTGCTGTCTG- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91406160 96 - 120129022 ---GAACTGATTCTACATCGACAGAAATCAT---AGCCCT-----TTCTGCT-GCAGAGGAAGTCAGTCTTAT---------------------------------------------------------T---AGGAATTGGGGAGC---------------------------------------------------------------------------TGTCCAGTAAGA------CCTCCCCA i mm10.chr12 C 0 C 0 s canFam3.chr17 2020952 242 + 64289059 AAATTA-TGATTTTAAATTCATGGAAATTACA--AAACAAAGCTCTCTGGCTGAAAAAGGAAAGCAGTCTTTTAGATTTAAGGGTTGGCTCATACCAACAAGAAtcgatggcatggacagcaggtgttaga---gaaggctgttgagtcactggcctctgcctctgaaactaataatacgctgtatgttaattaattgaattagaaaataaaaaTTAGAAAAGTTTTAGAAAAGAATTCT-TGTCCCTA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 540359 102 + 2232271 AAATAGTTGATTTTAAATCAACAGACATCACA--AGATAG-----------G-AAAAA------CAATGTTATAGATT---------------------------------------------------TAATGGGGCTATGGAAGAC---------------------------------------------------------------------------TCTCCAATAAGGAGTCT-CTTCCTTC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625504 349 - 159902609 I e proCoq1.NW_012151163v1 938356 83 + 1238772 I a score=2991683.000000 s hg38.chr2_KI270769v1_alt 31663 266 + 120616 TGTTCTATCGGTTGTTGAATTGTAATGTTTTT--ATGATTTGATCGGCTTGAACTGTACCTCACGCTTGGCT-CTCTTATTGCCTAATTACACGTGCAGCGTTGACAAATGGCATGCC---CCTCCGTGCC-GTCA-GCACACTGACCTTGTCACCATTACTAACGGC--TGGCTGGCGCTGCTTCCAGCAAGGTGAGCAGCTGTG---GCCA---GTGGCTATGCGTTTGGGTCATGGATTCCACCATGCCTTGCATGTGTGTTT-GGTCACATGT-----TCTGCC s panTro5.chr2A 3483969 266 + 111504155 TGTTCTATCGGTTGTTAAATTGTAATGTTTTT--ATGATTTGATCGGCTTGAGCTGTACCTCACGCTTGGCT-CTCTTATTGCCTAATTACACATGCAGCGTTGACAAATGGCATGCC---CCTCCGTGCC-GTCA-GCACACTGACCTTGTCACCATTACTAACGGC--TGGCTGGCGCTGCTTCCAGCAAGGTGAGCAGCTGTG---GCCA---GTGGCTATGCGTTTGGGTCATGGATTCCACCATGCCTTGCATGTGTGTTT-GGTCACATGT-----TCTGCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354163 266 + 114371477 TGTTCTATCGGTTGTTAAATTGTAATGTTTTT--ATGATTTGATCGGCTTGAGCTGTACCTCACGCTTGGCT-CTCTTATTGCCTAATTACACATGCAGCGTTGACAAATGGCATGCC---CCTCCGTGCC-GTCA-GCACACTGACCTTGTCACCATTACTAACGGC--TGGCTGGCGCTGCTTCCAGCAAGGTGAGCAGCTGTG---GCCA---GTGGCTATGCGTTTGGGTCATGGATTCCACCATGCCTTGCATGTGTGTTT-GGTCACATGT-----TCTGCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 229751 263 + 637652 TGTTCTATCGGTTGTTAAATTGTAATGTTTTT--ATGATTTGATCGGCTCGAACTGCACCTCACGCTTGGCT-CTCTTATTGCCTAATTACACGTGCAGCATTGACAAATGGCATGCC---CCTCCGTGC----CA-GCACACTGACCTTGTCACCACTACTAATGGC--TGGCTGGCGCTGCTTCCAGCAAGGTGAGCAGCTGTG---GCCA---GTGGCTATGCGTTTGGGTCATGGATTCCACCATGCCGTGCATGTGTGTTT-GGTCACATGT-----TCTGCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3025215 266 + 81552678 TGTTCTGTCGGTTGTTAAATTTTAATGTTTTT--ATGATTTGATTGGTTCGAACTGTATCTCACGCTTGGCT-CTCTTATTTCCTAATTACACGTGCGGCGTTGACAAATGGCATTCC---CCTCCATGCC-GTCA-GCACACTGACCTTGTCATGATTACTAATGGC--TGGCTGGCGCTGCTTCCAGCAAGGTGAGCAGCTGTG---GCCA---GTGGCTATGCGTTTGGGTCATGTATTCCACCATGCCTTGCATGTGTGTTT-GGTCACATGT-----TCTGCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3287690 266 + 108979918 TGCTCTATCAGTTGCTAAATGTTACTGTTTTT--ATGATTTCATCAGCTCGAACTGTATCTCACGCTTGGCT-CTCTTATTGCCTAATTACACGTGCAGCGTTGACAAATGGCATTCC---CCTCCGTGCT-GCCA-GCACACTGACCTTGTCATGATTACTAATGGC--TGGCTGGCGCTGCTTCCAGCAAGGTGAGCAGCTGTG---GCCA---GTGGCTATGCGTTTGGGTCATGGATTCCACCATGCCTTGCATGTGTGTTT-GGTCACATGT-----TCTGCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000457 266 - 111193037 TGCTCTATCAGTTGCTAAATGTTACTGTTTTT--ATGATTTGATCAGCTCGAACTGTATCTCACGCTTGGCT-CTCTTATTGCCTAATTACACGTGCAGCGTTGACAAATGGCATTCC---CCTCCGTGCT-GCCA-GCACACTGACCTTGTCATGATTACTAATGGC--TGGCTGGCGCTGCTTCCAGCAAGGTGAGCAGCTGTG---GCCA---GTGGCTATGCGTTTGGGTCATGGATTCCACCATGCCTTGCATGTGTGTTT-GGTCACATGT-----TCTGCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395227 266 + 3644372 TGCTCTATCAGTTGCTAAATGTTACTGTTTTT--ATGATTTGATCAGCTCGAACTGTATCTCACGCTTGGCT-CTCTTATTGCCTAATTACACGTGCAGCGTTGACAAATGGCATTCC---CCTCCGTGCT-GCCA-GCACACTGACCTTGTCATGATTACTAATGGC--TGGCTGGCGCTGCTTCCAGCAAGGTGAGCAGCTGTG---GCCA---GTGGCTATGCGTTTGGGTCATGGATTCCACCATGCCTTGCATGTGTGTTT-GGTCACATGT-----TCTGCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3349878 266 - 10304083 TGCTCTATCAGTTGCTAAATGTTACTGTTTTT--ATGATTTGATCAGCTCGAACTGTATCTCATGCTTGGCT-CTCTTATTGCCTAATTACATGTGCAGCGTTGACAAATGGCATTCC---CCTCCGTGCT-GCCA-GCACACTGACCTTGTCATGATTACTAATGGC--TGGCTGGCGCTGCTTCCAGCAAGGTGAGCAGCTGTG---GCCA---GTGGCTATGCGTTTGGGTCATGGATTCCACCATGCCTTGCATGTGTGTTT-GGTCACGTGT-----TCTGCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3432785 268 - 107702431 TGCTCTATCAGTTGCTAAATGTTACTGTTTTT--ATGATTTGATCAGCTCAAACTGTATCTCACGCTTGGCT-CTCTTATTGCCTAATTACACGTGCAGCGTTGACAAATGGCATTCC---CCTCCGTGCT-GCCA-GCACACTGGCCTTGTCATGATTACTAATGGCTGTGGCTGGCGCTGCTTCCAGCAAGGTGAGCAGCTGTG---GCCA---GTGGCTATGCGTTTGGGTCATGGATTCCACCATGCCTTGCATGTGTGTTT-GGTCACATGT-----TCTGCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967436 266 + 1565135 TGCTCTATCAGTTGCTAAATGTTACTGTTTTT--ATGATTTGATCAGCTCGAACTGTATCTCACGCTTGGCT-CTCTTATTGCCTAATTACACGTGCAGCGTTGACAAATGGCATTCC---CCTCCGTGCT-GCCA-GCACACTGACCTTGTCATGATTACTAATGGC--TGGCTGGCGCTGCTTCCAGCAAGGTGAGCAGCTGTG---GCCA---GTGGCTATGCGTTTGGGTCATGGATTCCACCATGCCTTGCATGTGTGTTT-GGTCACATGT-----TCTGCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3338627 266 - 13651311 TGTTCTATCAGTTGCTAAATTTTACTGTTTTT--ATGATTTGATCACCTCGAACTGTATCTCACGCTTGGCT-CTCTTATTGCCTAATTACACGTGCAGCGTTGACAAATGGCATTCC---CCTCCGTGCT-GCCA-GCACACTGACCTTGTCATGATTACTAATGGC--TGGCTGGCGCTGCTTCCAGCAAGGTGAGCAGCTGTG---GCCA---GTGGCTATGCGTTTGGGTCATGGATTCCACCATGCCTTGCATGTGTGTTT-GGTCACATGT-----TCTGCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3431130 263 - 108792865 CGTTCTATCAGTTGTTAAATTTTCATGCTTTT--ATGATTTAATCACCTTGAACTGTGTCTCACGCTTGGCT-CTCTCATTGCCTAATTACACGTGCAATGTTGACAAATGGCATT-C---CCTCCATGCC-GCGA-GCACACTGACCTTGTCGTGGTTACTTATGGC--TGGCTGGGACTGCCTGCAGCAGGGTGAGCGGCTGTG---TCCA---GCGGCCGTGCGTTCATGTC-TGTATTCTCCCATGCCTTGCGTGTGCGTTT-GGTCACGTG------TCTGCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085489 263 - 7082604 CGTTCTATCAGTTGTTAAATTTTCATGCTTTT--ATGATTTGATCAGCTTGAACTGTGTCTCAGGCTTGGCG-CGCTCATTGCCTAATTACACGTGCAACGTTGACAAATGGCATT-C---CCTCCATGCC-GCCA-GCACACTGACCTTGTCGTGGTTACTAATGGC--TGGCTGGGACTGCCTGCAGCGAGGTGAGCGGCTGTG---TCCT---GGGGCCGTGCGTCCAGGTC-TGTGTTCTCCCGCGCCTTGCGTGTGTGTTT-GGTCACGTG------TCTGCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571230 263 + 5243153 CGTTCTCTCAGTTGTTAAATTTTCATGCTTTT--ATTATTTGATCAGCTTGAACTGTGTCTCACGCTTGGCT-CTCTCATTGCCTAATTACACATGCAACGTTGACAAATGGCATT-C---CCTCCATGCC-GCCA-GCACACGGACCTTGTCGTGGTTACTAATAGC--TGGCTGGGACTGCCTGCAGCAAGGTGAGCGGCTGTG---TCCA---GTGGCCGTGCATTCAGGTC-TGCATTCTCCCATGCCTTGCGTGTGTGTTT-GTTCACATG------TCTGCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904453 263 - 1938448 CGTTCTATCGGTTGTTAAATTTTCATGCTTTT--ATGATTCGATCAGCTTGAACTGTGTCTCACGCTTGGGT-CTCTCATTGCCTAATTACACGTGCAACGTTGACAAATGGCATT-C---CCTCCCTGCC-ACCA-GCACACTGACCTTGTCGTGGTTACTAATGGC--TGGCTGGGACTGCCTGCAGCAAGGTGAGCGGCTATA---TCCA---GTGGCTGTGCATTCAGGTC-TGTATTCTCCCGTGCCTTGCATGTGTGTTT-GGTCACGTG------TCTGCC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 938439 261 + 1238772 TGTTCTCTCAGTTGTTGAATTTTAATGTTTTT--ATGATTTTATCATCTCAAACTGTGTCCCGC--TTGGCT-CTCTTATTGCCTGATTACACGTGCAGTGTTGACAAATGGCACTGC---CCTCCGTGCC-GGCCAGCTGACTGACCTCGCCACGATCACTGATGGC--TGGATGGAGCTGCTTCCAGCGGAGCAGGCAGCCGTG---CCTG---GTGGCTGT-----TGGGTCACGCCTTCCGTCATATCCTGCACGTGTGTTTGGGTCACACAT-----TCCCTC i proCoq1.NW_012151163v1 I 83 C 0 s otoGar3.GL873658 2512370 243 + 5252280 --------TGGGTATTAGGTGTGAATGGTTCT--CGGATGGGACCGTCTCCCGCTGCCTCCCGA---TGGCC-CTCCTGCTGCCTCGTTACG-GTGCAGTGTGGACACA-GGCTCTGC---CCTC--TGCT-GGCC-GCTGACCACCCTTGCCTCAGTTTCTGATGGC--TGGATAGAAC----TTTGACTGTGCATCCTGCCTGT---CCTG--CCTGTGTGT-----CTGGACACGCATCCCTCCTTGTCCTGCGTGTGTGTCT-GACCACACAT-----CCCATT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91406256 256 - 120129022 TGTCGTAGGCATTATCCACTTTTACTG---TT--GGGGTCTGACTGTCTCAAA--GCACCTGCTCCTTGTAC-CTCTTACTGCCAAGTCACAGTGGCCATGTCATCAAGTGACACTACTAACTTCTGCACCAGCTA-GCCAGATGCCCTTGCCCTGGTTGCTAAGGTC--TGGATGGCATTGCTCCCA-Caaagcaagaaagtgtg---tgtatgtgtgtgcatgcatgtgtgt-------------gtgc---gcgcgtgtgtGT-GTGCACATGTGTGTGTGCGCC i mm10.chr12 C 0 I 23 s canFam3.chr17 2021194 162 + 64289059 TGTTCCATCAGTTGCTAAATTCTGATGTTTTT--AGGATTTGCTCGTGTCAAACAGCATCTCCTG-----------------------TACAC-CGCAGAGG---------------C---CGT---TGTT-GCCA-GCAG-----------------------------TGGCAGGAGCTGGGTCCGG-------------TGTG---GCAG---GTG-CCACATGTAGGGGTGGC----------------------TGTGCTT-GGTGACACGT-----CCTGCT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 540461 259 + 2232271 TGTTCTATTAGTTGTTAAACTTTAGGTTTTTTTAATAATTTGATCATCTTGAACTCTATCTCATGCTTGGCTCCCCTTATTGCCTAATTACACATGTAACATTGATAAATGACATTCT---TCTTTGTACCAGCCA-GCTGACTGACCTTGTCATTATTACTAATGGC--TGGATGGAGCTGCTTCTGGCAAAGCAAGCAACTGTGTGTTTTA---GTGGCTCTGGGTTTTTTTGTTTGGTTT--------------TTTTTTTTT-GGTTACTTTT-----TCCGTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625504 349 - 159902609 I a score=2692788.000000 s hg38.chr2_KI270769v1_alt 31929 138 + 120616 GTGTCTTGCAGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTGTGCGGACGTCTCCTCACAGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCTCACCAGCCACACGACAGATTCACTGCAGGTGA----GAACACCTT s panTro5.chr2A 3484235 138 + 111504155 GTGTCTTGCAGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTGTGCGGACGTCTCCTCACAGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGATTCACTGCAGGTGA----GAACACCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354429 138 + 114371477 GTGTCTTGCAGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTGTGCGGACGTCTCCTCACAGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGATTCACTGCAGGTGA----GAACACCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230014 138 + 637652 GTGTCTTGCAGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTGTGCGGACGCCTCCTCACAGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGATTCACTGCAGGTGA----GAACACCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3025481 138 + 81552678 GTGTCTTGCAGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTCTGCGGACGTCTCCTCACGGCCCACGGCCAGGGCTATGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGATTCACTGCAGGTGA----GAACACCTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3287956 138 + 108979918 ATGTCTTGCAGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTGTGCGGACGTCTCCTCACAGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGATTCACTGCAGGTGA----GAACACCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000723 138 - 111193037 ATGTCTTGCAGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTGTGCGGACGTCTCCTCACAGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGATTCACTGCAGGTGA----GAACACCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395493 138 + 3644372 ATGTCTTGCAGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTGTGCGGACGTCTCCTCACAGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGATTCACTGCAGGTGA----GAACACCTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350144 138 - 10304083 ATGTCTTGCAGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTGTGCGGACGTCTCCTCACAGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGATTCACTGCAGGTGA----GAACACCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433053 138 - 107702431 ATGTCTTGCAGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTGTGCGGACGTCTCCTCACAGCCCATGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGATTCACTGCAGGTGA----GAACACCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967702 142 + 1565135 ATGTCTTGCAGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTGTGCGGACGTCTCCTCACAGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGATTCACTGCAGGTGAGAACGAACACCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3338893 138 - 13651311 ATGTCTTGCAGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTGTGCGGACGTCTCCTCACAGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGATTCACTGCAGGTGA----GAACACCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3431393 138 - 108792865 CTGTCTTGCAGAGCTGCAGAAACTGGAGGGCGGCAGTGGACCTCTGCGGACGCCTCCTCACCGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTACCCACCAGCCACACGACAGACTCACTGCAGGTTA----GAATACCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085752 138 - 7082604 CTGTCTTGCAGAGCTGCAGAAACTGGAGGGCGGCAGTGGACCTGTGCGGACGCCTCCTCACCGCCCATGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGACTCACTGCAGGTTA----GAACACCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571493 138 + 5243153 CTGTCTTGCAGAGCTGCAGAAACTGGAGGGCGGCAGTGGACCTGTGCGGACGCCTCCTCACCGCCCATGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGACTCACTGCAGGTTA----GGACACCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904716 138 - 1938448 TTGTCTTGCAGAGCTGCAGAAACTGGAGGGCGGCAGTGGACCTGTGCGGACGCCTCCTCACCGCCCATGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGATTCGCTGCAGGTCA----GAACACCTT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2625853 138 - 159902609 GTGTCTTGCAGAGCTGCAGAAACTGGAGGGCGGCAGTGGACCTGTGCGGACGCCTCCTCACCGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCCTACCAGCCACACGACAGATTCGCTGCAGGTTA----GCACACCTT i micMur3.chr8 I 349 I 566 s proCoq1.NW_012151163v1 938700 138 + 1238772 GTGTCTTGCAGAGCTGCAGAAACTGGAGGGCGGCGGTGGACCTGTGCGGACGCCTCCTCACGGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGACTCGCTGCAGGTTA----GAACACCTT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2512613 137 + 5252280 GTATCTTGCAGAGCTGCCGAAACTGGAGAGCAGCAGTGGACCTCTGCGGGCGCCTCCTCACAGCCCACGGCCAGGGCTATGGCAAGAGCGGGCTGCCCACCAGCCACACCACAGATTCACTGCAGGTGA----G-ACACCTT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91406535 138 - 120129022 TTTTCTTACAGAGCTGCAGGAACTGGAGGGCAGCAGTCGACCTGTGTGGACGCCTGCTCACAGCCCACGGACAAGGCTATGGCAAGAATGGGCTGCCCACCAGCCACACCACAGACTCCTTGCAGGTGA----GAGCTCCTA i mm10.chr12 I 23 C 0 s canFam3.chr17 2021356 134 + 64289059 GTGTCTTACAGAGCTGCAAAAACTGGAGGGCAGCGGTTGACCTGTGCGGGCGCCTTCTCACCGCCCACGGCCAAGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGGCAGACTCGTTGCAG--------GTACAGTTC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 540720 137 + 2232271 GTGCCTTATAGAACAGCAAAAACTGGAGGGCAGCAGTTGACCTGTGTGGACGCCTTCTTACAGCCCATGGTCAAGGCTATGGCAAGAGCGGGCTACCTACCAGTCATACAACAGATTCGTTACAGGT-A----GAACACCTT i dasNov3.JH580157 C 0 C 0 a score=16670.000000 s hg38.chr2_KI270769v1_alt 32067 1 + 120616 T s panTro5.chr2A 3484373 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354567 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230152 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3025619 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288094 1 + 108979918 T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000861 1 - 111193037 T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395631 1 + 3644372 T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350282 1 - 10304083 T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433191 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967844 1 + 1565135 T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339031 1 - 13651311 T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3431531 1 - 108792865 T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085890 1 - 7082604 T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571631 1 + 5243153 T i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904854 1 - 1938448 T i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 938838 1 + 1238772 T i proCoq1.NW_012151163v1 C 0 I 20 s otoGar3.GL873658 2512750 1 + 5252280 T i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91406673 1 - 120129022 T i mm10.chr12 C 0 C 0 s canFam3.chr17 2021490 1 + 64289059 C i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 540857 1 + 2232271 T i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625991 566 - 159902609 I a score=171401.000000 s hg38.chr2_KI270769v1_alt 32068 20 + 120616 CAGGTGCTGGAGTTTAACCT s panTro5.chr2A 3484374 20 + 111504155 CAGGTGCTGGAGTTTAACCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354568 20 + 114371477 CAGGTGCTGGAGTTTAACCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230153 20 + 637652 CAGGTGCTGGAGTTTAACCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3025620 20 + 81552678 CAGGTGCTGTAGTTTAACCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288095 20 + 108979918 CAGGGGCTGTAGTTTAACCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000862 20 - 111193037 CAGGGGCTGTAGTTTAACCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395632 20 + 3644372 CAGGGGCTGTAGTTTAACCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350283 20 - 10304083 CAGGGGCTGTAGTTTAACCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433192 20 - 107702431 CACGGGCTGTAGTTTAACCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967845 20 + 1565135 CAGGGGCTGTAGTTTAACCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339032 20 - 13651311 CAGGGGCTGTAGTTTAACCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3431532 20 - 108792865 CAGGGGCTGTCGCTTAATCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085891 20 - 7082604 CAGGTGCTGTCGCTTAACCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571632 20 + 5243153 CAGGTTCTGTTGCTTAATCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904855 20 - 1938448 CAGGTGCTGTCGCTTAATCT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2512751 20 + 5252280 TGGTTATCGTACTTTTATTT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91406674 13 - 120129022 -------TGTGGTATTACCT i mm10.chr12 C 0 C 0 s canFam3.chr17 2021491 10 + 64289059 -------CATGGTTTGG--- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 540858 18 + 2232271 TGATTGCTCT--TTTTATTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625991 566 - 159902609 I e proCoq1.NW_012151163v1 938839 20 + 1238772 I a score=130820.000000 s hg38.chr2_KI270769v1_alt 32088 9 + 120616 GGCTTATCA s panTro5.chr2A 3484394 9 + 111504155 GGCTTATCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354588 9 + 114371477 GGCTTATCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230173 9 + 637652 GGCTTATCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3025640 9 + 81552678 GGCTTATCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288115 9 + 108979918 GGCTTATCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000882 9 - 111193037 GGCTTATCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395652 9 + 3644372 GGCTTATCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350303 9 - 10304083 GGCTTATCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433212 9 - 107702431 AGCTTGTCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967865 9 + 1565135 GGCTTATCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339052 9 - 13651311 GGCTTATCA i colAng1.NW_012118821v1 C 0 I 6 s calJac3.chr14 3431552 9 - 108792865 GGCTCATCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085911 9 - 7082604 GGCTCATCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571652 9 + 5243153 GGCTCATCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904875 9 - 1938448 GGCTCTTCA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 938859 9 + 1238772 GGCTTATCA i proCoq1.NW_012151163v1 I 20 C 0 s otoGar3.GL873658 2512771 9 + 5252280 GGTTTACAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91406687 9 - 120129022 GGTTCATCA i mm10.chr12 C 0 C 0 s canFam3.chr17 2021501 3 + 64289059 ------TCA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 540876 9 + 2232271 GACTTGTCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625991 566 - 159902609 I a score=564379.000000 s hg38.chr2_KI270769v1_alt 32097 43 + 120616 CAGTCTGGGGACATGGACAGGACCATGGCCTTTCATGCCAATA s panTro5.chr2A 3484403 43 + 111504155 CAGTTTGGGGACATGGACAGGACCATGGCCTTTCATGCCAATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354597 43 + 114371477 CAGTTTGGGGACATGGACAGGACCATGGCCTTTCATGCCAATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230182 43 + 637652 CAGTTTGGGGACATGGACAGGACCATGGCCTTTCATGCCAATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3025649 43 + 81552678 CAGTTTGGGGACATGGACAGGACCACGGCCTTTCATGCCGATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288124 43 + 108979918 CAGTTTGGGGACATGGACAGGACCATGGCCTTTCATGCCAGTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000891 43 - 111193037 CAGTTTGGGGACATGGACAGGACCATGGCCTTTCATGCCAGTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395661 43 + 3644372 CAGTTTGGGGACATGGACAGGACCATGGCCTTTCATGCCAGTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350312 43 - 10304083 CAGTTTGGGGACATGGACAGGACCATGGCCTTTCATGCCAGTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433221 43 - 107702431 CAGTTTGGGGACATGGATAGGACCATGGCCTTTCATGCCAGTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967874 43 + 1565135 CAGTTTGGGGACATGGACAGGACCATGGCCTTTCATGCCAGTA i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3431561 31 - 108792865 TAGTGTGGGGACA------------CGGCCTTTCATGCCAATA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085920 43 - 7082604 CAGTGTGGGGACATGGACAGGACCGTGGCCTTTCATGCCAATA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571661 43 + 5243153 CAGTGTGGGGACATGGACAGGACCATGGCCTTTCATGCCAATA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904884 43 - 1938448 CAGTGTGGGGACGTGGACAGGACCGTGGCCTTTCATGCCAATA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 938868 43 + 1238772 CACTTTGGGGACATGGAAGGGATCGTGGCCTTTCATGCCAATA i proCoq1.NW_012151163v1 C 0 I 393 s otoGar3.GL873658 2512780 41 + 5252280 TAGTTTGGGAAC--GGAAGAGACCCTGGCCTTTCATGCCAATA i otoGar3.GL873658 C 0 I 14 s mm10.chr12 91406696 42 - 120129022 TCATTTGGGGACATATA-GGGACCGTGGCCTTTCATGTAAGGT i mm10.chr12 C 0 I 2 s canFam3.chr17 2021504 42 + 64289059 TCATGTGGGGACAAGGAAGGGA-CGTGACCTTTCATGCCATTA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 540885 43 + 2232271 TAATTTGGTGACATGGAAGAGATCATGGTCTTTCATGTCAATA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625991 566 - 159902609 I e colAng1.NW_012118821v1 3339061 6 - 13651311 I a score=38247.000000 s hg38.chr2_KI270769v1_alt 32140 4 + 120616 ---ACAA---------- s panTro5.chr2A 3484446 4 + 111504155 ---ACAA---------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354640 4 + 114371477 ---ACAA---------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230225 4 + 637652 ---ACAA---------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3025692 4 + 81552678 ---ACAA---------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288167 4 + 108979918 ---ACAA---------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000934 4 - 111193037 ---ACAA---------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395704 4 + 3644372 ---ACAA---------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350355 4 - 10304083 ---ACAA---------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433264 4 - 107702431 ---ACAA---------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967917 4 + 1565135 ---ACAA---------- i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3431592 4 - 108792865 ---ACAA---------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085963 4 - 7082604 ---ACAG---------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571704 4 + 5243153 ---ACAG---------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904927 4 - 1938448 ---ACAG---------- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2512835 4 + 5252280 ---ACAA---------- i otoGar3.GL873658 I 14 I 9 s mm10.chr12 91406740 4 - 120129022 ---ACAG---------- i mm10.chr12 I 2 C 0 s canFam3.chr17 2021546 4 + 64289059 ---AGAA---------- i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 540928 17 + 2232271 AGAACAATTTTAGAACA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625991 566 - 159902609 I e proCoq1.NW_012151163v1 938911 393 + 1238772 I e colAng1.NW_012118821v1 3339061 6 - 13651311 I a score=35010.000000 s hg38.chr2_KI270769v1_alt 32144 3 + 120616 AAA s panTro5.chr2A 3484450 3 + 111504155 AAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354644 3 + 114371477 AAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230229 3 + 637652 AAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3025696 3 + 81552678 AAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288171 3 + 108979918 AAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000938 3 - 111193037 AAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395708 3 + 3644372 AAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350359 3 - 10304083 AAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433268 3 - 107702431 AAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967921 3 + 1565135 AAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339067 3 - 13651311 AAA i colAng1.NW_012118821v1 I 6 C 0 s calJac3.chr14 3431596 3 - 108792865 AAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085967 3 - 7082604 AAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571708 3 + 5243153 AAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904931 3 - 1938448 AAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2512848 3 + 5252280 aaa i otoGar3.GL873658 I 9 C 0 s mm10.chr12 91406744 3 - 120129022 AAC i mm10.chr12 C 0 C 0 s canFam3.chr17 2021551 2 + 64289059 AA- i canFam3.chr17 I 1 I 377 s dasNov3.JH580157 540945 3 + 2232271 AAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625991 566 - 159902609 I e proCoq1.NW_012151163v1 938911 393 + 1238772 I a score=58492.000000 s hg38.chr2_KI270769v1_alt 32147 6 + 120616 G------TATGT s panTro5.chr2A 3484453 6 + 111504155 G------TATAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354647 6 + 114371477 G------TATAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230232 6 + 637652 G------TGTAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3025699 6 + 81552678 G------TGTAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288174 6 + 108979918 G------TATAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000941 6 - 111193037 G------TATAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395711 6 + 3644372 G------TATAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350362 6 - 10304083 G------TATAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433271 6 - 107702431 G------TATAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967924 6 + 1565135 G------TATAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339070 6 - 13651311 G------CATAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3431599 6 - 108792865 G------TATAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085970 6 - 7082604 G------TGTAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571711 6 + 5243153 G------TATAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904934 6 - 1938448 G------TATAT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2512851 12 + 5252280 gtcccactatgt i otoGar3.GL873658 C 0 I 229 s mm10.chr12 91406747 6 - 120129022 G------AGGAT i mm10.chr12 C 0 C 0 s dasNov3.JH580157 540948 6 + 2232271 G------TAGGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625991 566 - 159902609 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 938911 393 + 1238772 I a score=315897.000000 s hg38.chr2_KI270769v1_alt 32153 31 + 120616 TTTCATAT----------------------------CC----------------------------TGCTTCTTTCTCTCCTAATTA s panTro5.chr2A 3484459 31 + 111504155 TTTCATAT----------------------------CC----------------------------TGCTTCTTTCTCTCCTAATTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354653 31 + 114371477 TTTCATAT----------------------------CC----------------------------TGCTTCTTTCTCTCCTAATTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230238 31 + 637652 TTTCATAT----------------------------CC----------------------------TGCTTCTTTCTCTCCTAATTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3025705 31 + 81552678 TTTCATAT----------------------------CC----------------------------TGCTTCTTTCTCTCCTAATTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288180 31 + 108979918 TTTCATAT----------------------------CC----------------------------TGCTTCTTTATCTCCTAATTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000947 31 - 111193037 TTTCATAT----------------------------CC----------------------------TGCTTCTTTATCTCCTAATTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395717 31 + 3644372 TTTCATAT----------------------------CC----------------------------TGCTTCTTTATCTCCTAATTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350368 31 - 10304083 TTTCATAT----------------------------CC----------------------------TGCTTCTTTATCTCCTAATTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433277 31 - 107702431 TTTCATAT----------------------------CC----------------------------TGCTTCTTTATCTCCTAATTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967930 31 + 1565135 TTTCATAT----------------------------CC----------------------------TGCTTCTTTATCTCCTAATTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339076 31 - 13651311 GTTCATAT----------------------------CC----------------------------TGCTTCTTTATCTCCTAATTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3431605 31 - 108792865 TTTCATAT----------------------------CC----------------------------TACTTCTTTCTCTCCTAAGTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3085976 31 - 7082604 TTCCACAT----------------------------CC----------------------------TGCTTCTTTCTCTCCTAAGTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571717 31 + 5243153 TTCCATAT----------------------------CC----------------------------TGCTTCTTTCTCTCCTAAGTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904940 31 - 1938448 TTTCATAT----------------------------CC----------------------------TGCTTCTTTCTCTCCTAAGTC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2513092 59 + 5252280 TTTCATATCCTGAGCTTAATCTCAGTATGAAGTTACCC----------------------------TGCTTCTCCCTTTCTTAATTA i otoGar3.GL873658 I 229 C 0 s mm10.chr12 91406753 27 - 120129022 TTCCACAG------------------------------------------------------------GTCCTTCCTTCCCAAATTA i mm10.chr12 C 0 I 1046 s dasNov3.JH580157 540954 59 + 2232271 TTTCAGGT----------------------------CCTAAATTTAATCTCAGTGTGAGATTACTGTAGTTCATGGTTTCCTGAATA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625991 566 - 159902609 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 938911 393 + 1238772 I a score=2727952.000000 s hg38.chr2_KI270769v1_alt 32184 280 + 120616 TATTGTATATACTATACTG--G--GGCACTGGAATTCTCACTTCGGCCCGTCAGGACGCC--TGTGCGCCCCAGAAGCACGCTCAC-AAGTGCCCA-CACTCAGTCT-CATGGTGGA-ACCGG-CATGGCTTTGGGTCAGCAGGTGGG-TTCGCCT--CACGACTGGCAGTAGCAACTGGCCTGTGCGGGGCTCTGGGGCGTGTCTGGGCCCGGTAGGAAACAGTGACAGGAGCAGTTGGTTCTGTCCA-CCCCAAGGACG-GAGGGTCCATGTGCCA----TTTGCTCCTCGTGGT---ATA------ s panTro5.chr2A 3484490 280 + 111504155 TATTGTATATACTATACTG--G--GGCACTGGAATTCTCACTTCGGCCCGTCAGGACGCC--TCTGCGCCCCAGAAGCACGCTCAC-AAGTGCCCA-CACTCAGTCT-CACGGTGGA-ACCGG-CATGGCTTTGGGTCAGCAGGTGGG-TTCGCCT--CACAACTGGCAGTAGCAACTGGCCTGTGCGGGGCTCTGGGGCGTGTCTGGGCCCGGTAGGAAACAGTGACAGGAGCAGTTGGTTCTGTCCA-CCCCAAGGATG-GAGGGTCCATGTGCCA----TTTGCTCCTCCTGGT---ATA------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354684 280 + 114371477 TATTGTATATACTATACTG--G--GGCACTGGAATTCTCACTTCGGCCCGTCAGGACGCC--TGTGCGCCCCAGAAGCACGCTCAC-AAGTGCCCA-CACTCAGTCT-CACGGTGGA-ACCGG-CATGGCTTTGGGTCAGCAGGTGGG-TTCGCCT--CACAACTGGCAGTAGCAACTGGCCTGTGCGGGGCTCTGGGGCGTGTCTGGGCCCGGTAGGAAACAGTGACAGGAGCAGTTGGTTCTGTCCA-CCCCAAGGATG-GAGGGTCCATGTGCCA----TTTGCTCCTCCTGGT---ATA------ i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230269 280 + 637652 TATTGTATATACTATACTG--G--GGCACTGGAATTCTCACTTCGGCCCGTCAGGACGCC--TTTGTGCCCCAGAAGCACACTCAC-AAGTGCCCA-CACTCAGTCT-CATGGTGGG-ACCGG-CATGGCTTTGGGTCAGCAGGTGGG-TTTGCCT--CACGACTGGCAGTACCAACTGGCCTGTGCGGGGCTCTGGGGCGTGTCTGGGCCCGGTAGGAAACAGTGACAGGAGCAGTTGGTTCTGTCCA-CCCGAAGGACG-GAGGGTCCATGTGCCA----TTTGCTCCTCCTGGT---ATA------ i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3025736 280 + 81552678 TATTGTATATACTATACTG--G--GGCACTGGAATTCTCACTTCGGCCCGTCAGGACGCC--CGTGCGCCTCAGAAGCACGCTCAC-AGGTGCCCA-CACTCAGTCT-CATGGTGGG-ACCGG-CATGGCTTTGGGTCAGCAGGTGGG-GTCGCCT--CACGACTGGCAGTAGCAACTGGCCTGTGCGGGGCTCTGGGGTGCGTCTGGGCCTCGTGGGAAACAGTGACAGGAGCAGTTGGTTCTGTCCA-CCCCAAGGACG-GAGGGTCCATGTGCCA----TTTGATCCTCCTGGT---ATA------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288211 284 + 108979918 TATTGTATATACTGTACTG--G--GGCACTGGAATTCTCACTTTGGCCCATCAGGACGCC--TGTGCGCCCCAGAAGCACACTCAC-AGGTGCCCA-CACTTGGTCT-CATGGTGGG-ACCAG-CATGGCTTTGGGTCAGCAGGCAGG-TTCGCCT--CACGACTGGCAGCAGCAGCTGGCCTGTGCGGGGATCTGGGGCATGTCTGAGCCCGGTAGGAAACAGTGACAGGAGCAGTTGGTTCTGTCCC-CCCCAAGGACG-GAGGGTCCATGTGCCATGGGTTTGCTCCTCCTGGC---ATA------ i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5000978 284 - 111193037 TATTGTATATACTGTACTG--G--GGCACTGGAATTCTCACTTTGGCCCATCAGGACGCC--TGTGCGCCCCAGAAGCACACTCAC-AGGTGCCCA-CACTTAGTCT-CATGGTGGG-ACCAG-CATGGCTTTGGGTCAGCAGGCGAG-TTCGCCT--CACGACTGGCAGCAGCAGCTGGCCTGTGCGGGGATCTGGGGCATGTCTGAGCCCGGTAGGAAACAGTGACAGGAGCAGTTGGTTCTGTCCC-CCCCAAGGACG-GAGCGTCCATGTGCCATGGGTTTGCTCCTCCTGGC---ATA------ i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3395748 284 + 3644372 TATTGTATATACTGTACTG--G--GGCACTGGAATTCTCACTTTGGCCCATCAGGACGCC--TGTGCGCCCCAGAAGCACACTCAC-AGGTGCCCA-CACTTAGTCT-CATGGTGGG-ACCAG-CATGGCTTTGGGTCAGCAGGCAGG-TTCGCCT--CACGACTGGCAGCAGCAGCTGGCCTGTGCGGGGATCTGGGGCATGTCTGAGCCCGGTAGGAAACAGTGACAGGAGCAGTTGGTTCTGTCCA-CCCCAAGGACG-GAGGGTCCATGTGCCATGGGTTTGCTCCTCCTGGC---ATA------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350399 284 - 10304083 TATTGTATATACTATACTG--G--GGCACTGGAATTCTCACTTTGGCCCATCAGGACGCC--TGTGCGCCCCAGAAGCACACTCAC-AGGTGCCCA-CACTTAGTCT-CATGGTGGG-ACCAG-CATGGCTTTGGGTCAGCAGGCAGG-TTCGCCT--CACGACTGGCAGCAGCAGCTGGCCTGTGCGGGGATCTGGGGCATGTCTGAGCCCGGTAGGAAACAGTGACAGGAGCAGTTGGTTCTGTCCA-CCCCAAGGACG-GAGGGTCCATGTGCCATGGGTTTGCTCCTCCTGGC---ATA------ i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433308 285 - 107702431 TATTGTATATACTATACTG--G--GGCACTGGAATTCTCACTTTGGCCCATCAGGACGCC--TGTGCGCCCCAGAAGCACACTCAC-AGGTGCCCA-CACTTAGTCT-CATGGTGGG-ACCAG-CATGGCTTTGGGTCAGCAGGCAGG-TTCGCCT--CACGACTGGCAGCAGCAGCTGGCCTGTGCGGGGATCTGGGGCATGTCTGAGCCCGGTAGGAAACAGTGACAGGAGCAGTTGGTTCTTTCCACCCCCAAGGACG-GAGGGTCCATGTGCCATGGGTTTGCTCCTCCTGGC---ATA------ i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 967961 284 + 1565135 TATTGTATATACTATACTG--G--GGCACTGGAATTCTCACTTTGGCCCATCAGGACGCC--TGTGCGCCCCAGAAGCACACTCAC-AGGTGCCCA-CACTTAGTCT-CATGGTGGG-ACCAG-CATGGCTTTGGGTCAGCAGGCAGG-TTCGCCT--CACGACTGGCAGCAGCAGCTGGCCTGTGCGGGGATCTGGGGCATGTCTGAGCCCGGTAGGAAACAGTGACAGGAGCAGTTGGTTCTGTCCA-CCCCAAGGACG-GAGGATCCATGTGCCATGGGTTTGCTCGTCCTGGC---ATA------ i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339107 284 - 13651311 TGTTGTATATACTATACTG--G--GGCACTGGAATCCTCACTTTGGCCCATCAGGACGCC--TGTGCGCCCCAGAAGCACGCTCAC-AGGTGCCCA-CACTCAGTCT-CATGGTGGG-ACCAG-CATGGCTTTGGGTCAGCAGGCAGG-TTCGCTT--CACGACTGGCAGCAGCAGCTGGCCTGTGCGGGGATCTGGGGCGTGTCTGGGCCCGGTAGGAAACAGTGACAGGAGCAGTTGGTTCTGTCCA-CCCCAAGGACG-GAGGGTCCATGTGCCATGGGTTTGCTCCTCCTGGC---ATA------ i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3431636 265 - 108792865 TACTGTATGTACCATACTC--G--GGCACTGGAATTCTCACTGTGCACTGTCAGGACACCTGTGTGTGCCCCAGAAGCACACTGAC-AGGTGCTCA-CACTCAGTCT-CATGGCGGG-ACTAG-CGTGGCTTTGGGTCAGCAGGTGGG-TTCGCCT--CACGACTGGCAGCAGTGGCTGGC--------------------GGTCTGAGCCT-GTGGGAAACGGTG-CAGGAGCAGCTGGCTCTGTATA--CCCAAGGACA-GAG-GTCCACGTGCCATGGGTTGGCTCGTCTTGGTATAATA------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3086007 283 - 7082604 TGCTG---ATACCATACTC--G--GGCACTGGAATTCTCACTGTGCACTGTCAGGACGCCTGTGTGTGCTCCGGAAGCACACTCAT-GGGTGCTCA-CACTCAGTCT-CATGGCGGG-ACCGG-CATGGCTTTGGGTCAGCAGGTGGG-TTCACCT--CGTGACTGGCAGCAGCAGCTGGCCCGAGCGGGACTCCGAGGCATGTCTGAGCCT-GTGGGAAACGGTG-CAGGAGCAGCTGGTTCTGTACA-CCCCAAGGACA-GAG-GTCCATGTGCCATGGGTTGGCTCCTCTTGGTATAATA------ i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 571748 286 + 5243153 TACTGTATATGCCATACTT--G--GGCACTGGAATTCTCACTGTGCACTGTCAGGACGCCTGTGTGCGCCCCAGAAGCACACTGAC-AGGTGCTCA-CACTCAGTCT-CATGGTGGG-ACCAG-CATGGCTTTGGGTCAGCAGGTGAG-TTCGCCT--CATGACTGGCAGCAGCAGCTGGCCGAAGCGGGACTCTGGGGCGCGTCTGAGCCT-GTGGGAAATGGTA-CAGGAGCAGCTGGTTCTGTACA-CCCCAAGGACA-GAG-GTCCATGTGCCGTGGCTTGGCTCCTCTTGGTATAATA------ i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1904971 286 - 1938448 TACTGTATATACCATACTC--A--GGCACTGGAATTCTCACTGTGCACTGTCAGGATGCCTGTGTGCGCCCCAGAAGCACACTCGC-AGGTGCTCA-CACTCAGTCT-CATGGCGGG-ACTGG-CATGGCTTTGGGTCAGCAGGTGGG-TTCACCT--CACGACTGGCAGCAGCGGCTGGCCCGAGAGAGACTCCGGGGCGCATCTGAGCCT-GTGGGAAACGGTG-CAGGAGCAGCTGGTTCTGTACA-CCCCAAGGACA-GAG-GTCCCTGTGCCATGGGTTGGCTCCTCTTGGTATGATA------ i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2513151 239 + 5252280 TGCCGTTTCTCTTACACCCATG--GGAACTGGGATTCTCACTCCACACTGTCA---------TG------CCAGAAGTTCGCTGCG-GGGTACTCA----------G-CAAGATGGG-----G-TGTGGC-TGAGGTTGGGAGGT-GG-TTCCCTG--TCTAGTTGAGAGCGACAACTGGCAC-----AGGCCCCCTGGTGTGTCTGGGCCTGGGGGAAAGCAGTGACATGGG----TGGTGCTATCTG-CACCTG----------GTCC-TGTGCCCTGGCTTTGCTCCTCCTGGT---ATA------ i otoGar3.GL873658 C 0 I 531 s dasNov3.JH580157 541013 300 + 2232271 TACTGTATATATTATATTG--ATCTGAATTCAAATTCTAACGTAATTTTGAAATAAATAC--TGTGCAT-CCAAAAATTCATTCGCAAGGTGCTTAGCACTTGATCTGCACAATAAACACCAGACATGGTATaaggatggcagataggttttgccttctgtgattggtaatgactgctaggttgtgaaggattctgaggcatgtctaggcctagtagaaaagattgacatgatcacttagttatgtctg-ccacaggaaagtgatggtatatatgccatgtatttgctatccctTAT---ATGATAGAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625991 566 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 938911 393 + 1238772 I a score=218726.000000 s hg38.chr2_KI270769v1_alt 32464 28 + 120616 TCACTTGCTCTGAAATT--T--aaaaaaaaag-- s panTro5.chr2A 3484770 21 + 111504155 TCACTTGCTCTGAAATT--T--AAA--------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354964 21 + 114371477 TCACTTGCTCTGAAATT--T--AAA--------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230549 21 + 637652 TCACTTGCTCTGAAATT--T--AAA--------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026016 21 + 81552678 TCACTTGCTCTGAAATT--T--AAA--------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288495 21 + 108979918 TCACTTGCTCTGAAATT--A--AAA--------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5001262 21 - 111193037 TCACTTGCTCTGAAATT--A--AAA--------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396032 21 + 3644372 TCACTTGCTCTGAAATT--A--AAA--------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350683 23 - 10304083 TCACTTGCTCTGAAATTAAA--AAA--------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433593 21 - 107702431 TCACTTGCTCTGAAATT--T--AAA--------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 968245 21 + 1565135 TCACTTGCTCTGAAATT--T--AAA--------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339391 21 - 13651311 TCACTTGCTCTGAAATT--T--AAA--------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3431901 19 - 108792865 TCACTTGCTCTGAAATT--T----A--------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3086290 23 - 7082604 TCACTTGCTCTGAAATT--TAAAAA--------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 572034 23 + 5243153 TCACTTGCTCTGAAATT--Taaaaa--------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1905257 21 - 1938448 TCACTTGCTCTGAAATG--T--AAA--------- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2513921 21 + 5252280 TCACTTGCTCTAAAATT--T--ACA--------- i otoGar3.GL873658 I 531 I 7 s dasNov3.JH580157 541313 23 + 2232271 ACACTTGCTCTTAAATT--T--ATA-------AA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625991 566 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 938911 393 + 1238772 I a score=938083.000000 s hg38.chr2_KI270769v1_alt 32492 86 + 120616 aaaaaagaaaag--ggaatgcacaaaatagaCTTGTGAACAAAAGGAAACTCATCTGAGAAGAAGGAACAGCTGCAAACGTTGATACA s panTro5.chr2A 3484791 86 + 111504155 AAAAAAGAAAAG--GGAATGCACAAAATAGACTTGTGAACAAAAGGAAACTCATCTGAGAAGAAGGAACAGCTGCAAATGTTGATACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3354985 86 + 114371477 AAAAAAGAAAAG--GGAATGCACAAAATAGACTTCTGAACAAAAGGAAACTCATCTGAGAAGAAGGAACAGCTGCAAATGTTGATACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230570 86 + 637652 AAAAAAGAAAAG--GGAATGCACAAAATAGACTTGTGAACAAAAGGAAACTCATCTGAGAAGAAGGAACAGCTGCAAACGTTGATACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026037 86 + 81552678 AAAAAAGAAAAG--GGAATGCACAAAATAGATTTGTGAACAAAAGGAAACTCATCTGAGAAGAAGGAACAGCTGCAAATGTTGATAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288516 80 + 108979918 AAAAAA--------GGAATGCACAAAATAGACTTGTGAACAAAAGGAAACTCATCTGAGAAGAAGGAACAGCTGCAAACGTTGATAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5001283 80 - 111193037 AAAAAA--------GGAATGCACAAAATAGACTTGTGAACAAAAGGAAACTCAGCTGAGAAGAAGGAACAGCTGCAAACGTTGATAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396053 80 + 3644372 AAAAAA--------GGAATGCACAAAATAGACTTGTGAACAAAAGGAAACTCATCTGAGAAGAAGGAACAGCTGCAAACATTGATAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350706 80 - 10304083 AAAAAA--------GGAATGCACAAAATAGACTTGTGAACAAAAGGAAACTCATCTGAGAAGAAGGAACAGCTGCAAACGTTGATAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433614 80 - 107702431 AAAAAA--------GGAATGCACAAAATAGACTTGTGAACAAAAGGAAACTCATCTGAGAAGAAGGAACAGCTGCAAACGTTGATAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 968266 80 + 1565135 AAAAAA--------GGAATGCACAAAATAGACTTGTGAACAAAAGGAAACTCATCTGAGAAGAAGGAACAGCTGCAAACGTTGATAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339412 86 - 13651311 AAAAAAGAAAAG--GAAATGCACAAAAGAGACTTGTGAACAAAAGGAAACTCATCTGAGAAGAAGGAGCAGCTGTAAACGTTGATAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3431920 81 - 108792865 AAAAAAGAAAAA--GGAATGCACAAAATAGATTCATGAACCAAAGGAAACTC-----ATAAGAAGGAACAGCCGCAAATGTTGATAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3086313 86 - 7082604 AAAAAAGAGAAA--GGAATGCACAAAGTAGATTCATGAACAAAAGGAAACTCATCTGATGAGAAGGAACAGCCACAAACGTTGATAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 572057 88 + 5243153 aaaaaaaaaaaaaTGGAATGCACAAAATAGATTTATGAACAAAAGGAAACTCATCTGATAAGAAGGAACAGCCGCAAATGTTGATCAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1905278 86 - 1938448 AAAAAAGAAAAA--GGAATGCACAACATAGATTCATGAACAAAAGGAAACTCATCTCATAAGAAGGAACAGCCGCAAACGTTGATAAA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 939304 83 + 1238772 AAAAAATAAAAA--GAAATGCACAAAATAGAGTTGTAAATGAAAGGAAGCTC---TGACGAGAAGGAACAGCTGCGAAATTTTATAAA i proCoq1.NW_012151163v1 I 393 C 0 s otoGar3.GL873658 2513949 70 + 5252280 ---------------GAACACATAAAACAGAATTATGAACAAAGGAAACTTC---TGATGAGAAGGAACAACTACAAAAGTTTATAAA i otoGar3.GL873658 I 7 C 0 s dasNov3.JH580157 541336 71 + 2232271 ---------------GAATACACAAAAGAAAGTTGTGAAAAAAAGAAAACTCCTCTGATGAGAAGGAAGAGCTTAAAAATCCTTCA-- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2625991 566 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I a score=674395.000000 s hg38.chr2_KI270769v1_alt 32578 57 + 120616 TTCTTACCTTTCCCTGGGGAG--TTTTTTAACTGTTCTTCTAGCTTACATGGGAATCC-C s panTro5.chr2A 3484877 57 + 111504155 TTCTTACCTTTCCCTGGGGAG--TTTTTTAACTGTTCTTCTAGCTTGCATGGGAATCC-C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355071 57 + 114371477 TTCTTACCTTTCCCTGGGGAG--TTTTTTAACTGTTCTTCTAGCTTGCATGGGAATCC-C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230656 57 + 637652 TTCTTACCTTTCCCTGGGGAG--TTTTTTACCTGTTCTTCTAGCTTACATGGGAATCC-C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026123 57 + 81552678 TTCTTACCTTTCCCTGGGGAG--TTTTTTAACTGTTCTTCTAGCTTACATGGGAGTCC-C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288596 57 + 108979918 TTCTTACCTTTCCCTGGGGAG--TTTTTCAACTGTTCTTCTAGCTTACATGGGAATCC-C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5001363 57 - 111193037 TTCTTACCTTTCCCTGGGGAG--TTTTTCAACTGTTCTTCTGGCTTACATGGGAATCC-C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396133 57 + 3644372 TTCTTACCTTTCCCTGGGGAG--TTTTTCAACTGTTCTTCTAGCTTACATGGGAATCC-C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350786 57 - 10304083 TTCTTACCTTTCCCTGGGGAG--TTTTTCAACTGTTCTTCTAGCTTACATGGGAATCC-C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433694 57 - 107702431 TTCTTACCTTTCCCTGGGGAG--TTTTTCAACTGTTCTTCTAGCTTACATGGGAGTCC-C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 968346 57 + 1565135 TTCTTACCTTTCCCTGGGGAG--TTTTTCAACTGTTCTTCTAGCTTACGTGGGAATCC-C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339498 57 - 13651311 TTCTTACCTTTCCCTGGGGAG--TTTTTCAACTGTTCTTCTAGCTTACATGGGAATCC-C i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3432001 55 - 108792865 TTCTTA-CTTTCCCTGGGGAG--TTTTT-AATTGCTGTTCTAGTTTATGTGGGAATCC-T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3086399 44 - 7082604 GTCTTACCTTTCCCTGGGAAG--TTTT-------------TAGCTTACATGGGAATCC-T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 572145 56 + 5243153 GTCTTACCTTTCCCTGGGGAG--TTTTT-AACCGCTATTCTGGCTTACATGAGAATCC-T i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1905364 56 - 1938448 GTCTTACCTTTCCCTGGGGAG--TTTTT-AACTGGTATTCTAGCTTAGGTGGGAGTCC-T i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2626557 59 - 159902609 TTCTTACCTTTTCCTGGGGAGTTTTTTTTAGCTGTTTTTCAAACTTACATGGGAATCCC- i micMur3.chr8 I 566 I 2171 s proCoq1.NW_012151163v1 939387 57 + 1238772 TTTTTACCTTTTCCTGGGGAG-TTTTTTAAACAGATTTTCTAACTTACTTGGGAATCC-- i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2514019 58 + 5252280 TGCTTACTTTTTTCTGGGGAGGTTGTTTTGGCCATTGCTCTACCTGACATGGGACTCC-- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 541407 57 + 2232271 ATTTTTCCATTCCATGGTTAG--TTTTTTCACTTTTATTTTAGCTTTTAGGTGAATTA-C i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I a score=262862.000000 s hg38.chr2_KI270769v1_alt 32635 23 + 120616 CCGGGACTAAACAGATCACCAGA s panTro5.chr2A 3484934 23 + 111504155 CCAGGACTAAACAGATCACCAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355128 23 + 114371477 CCAGGACTAAACAGATCACCAGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230713 23 + 637652 CCGGGACTAAACAGATCACCAGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026180 23 + 81552678 CTGGGACTAAACAGATCACCAGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288653 23 + 108979918 CCGGGACTAAACAGATCACCAGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5001420 23 - 111193037 CCGGGACTAAACAGGTCACCAGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396190 23 + 3644372 CCGGGACTAAACAGATCACCAGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350843 23 - 10304083 CCGGGACTAAACAGATCACCAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433751 23 - 107702431 CCGGGACTAAACAGATCACCAGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 968403 23 + 1565135 CCGGGACTAAACAGATCACCAGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339555 23 - 13651311 CCAGGACTAAACAGATCACCAGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3432056 15 - 108792865 CCGGGA--------ATCATCAGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3086443 23 - 7082604 CCAGGACCGAACTGATCATCAGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 572201 23 + 5243153 CCAGGGCTGAACCAATCATCAGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1905420 23 - 1938448 CCGGGACTGAACCGATGATCAGG i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 939444 23 + 1238772 CCAGAACTAAACGGATCACCAGA i proCoq1.NW_012151163v1 C 0 I 2279 s otoGar3.GL873658 2514077 22 + 5252280 CGAGAAGTAAACAGATC-CCAGA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 541464 23 + 2232271 CCAGAATTAAGCAAATCACCAGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I a score=3180253.000000 s hg38.chr2_KI270769v1_alt 32658 329 + 120616 TCCTTCAGAACTGTGATGAGCTTTTGAAAGGAGCAGCTCTGGGGAGCCCTGACAGCTTAGCTATTTCCAGCAGGCTCCTTCTCCTTCTTTCTCTTCCCCCAAGAGCCGAC---------------AAGAAGAGCCGCTCTAGCTTT--AAATGTACTTTCCCCCATCACCTCTCCATCCATTGGTTTGCCAAATCTTAGGCT-GTTTTCCTATCATTTCTCTCCAACCCACCACCACCCACAGTTCGAGCTCTCATTGCAGTGTTGCTTTGGCCTCTTTTATGAACTTAGTTCAAGTTTCTTTATTCACATTCATTCCATAAACTACCTCCAA-----------AAAAGCACACTTTT s panTro5.chr2A 3484957 329 + 111504155 TCCTTCAGAACTGTGATGAGCTTTTGAAAGGAGCAGCTCTGGGGAGCCCTGACAGCTTAGCTATTTCCAGCAGGCTCCTTCTCCTTCTCTCTCTTCCCCCAAGAGCCGAC---------------AAGAAGAGCCGCTCTAGCTTT--AAATGTACTTTCCCCCATCACCTCTCCATCCATTGGTTTGCCAAATCTTAGGCT-GTTTTCCTATCATTTCTCTCCAACCCACCACCACCCACAGTTCGAGCTCTCATTGCAGTGTTGCTTTGGCCTCTTATATGAACTTAGTTCAAGTTTCTTTATTCACATTCATTCCATAAACTACCTCCAA-----------AAAAGCACACTTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355151 329 + 114371477 TCCTTCAGAACTGTGATGAGCTTTTGAAAGGAGCAGCTCTGGGGAGCCCTGACAGCTTAGCTATTTCCAGCAGGCTCCTTCTCCTTCTCTCTCTTCCCCCAAGAGCCGAC---------------AAGAAGAGCCGCTCTAGCTTT--AAATGTACTTTCCCCCATCACCTCTCCATCCATTGGTTTGCCAAATCTTAGGCT-GTTTTCCTATCATTTCTCTCCAACCCACCACCACCCACAGTTCGAGCTCTCATTGCAGTGTTGCTTTGGCCTCTTATATGAACTTAGTTCAAGTTTCTTTATTCACATTCATTCCATAAACTACCTCCAA-----------AAAAGCACACTTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 230736 329 + 637652 TCCTTCAGAACTGTGATGAGCTTTTGAAAGGAGCAGCTCTGGGGAGCCCTGACAGCTTAGCTATTTCCAGCAGGCTCCTTCTCCTTCTCTCTCTTCCACCAAGAGCCGAC---------------AAGAAGAGCCACTCTAGCTTT--AAATGCACTTTCCCCCATCACCTCTCCATCCATTGGTTTGCCAAATCTTAGGCT-GTTTTCCTATCATTTCTCTCCAACCCACCACCACCCACAGTTCGAGCTCTCATTGCAGTGTTGCTTTGGCCTCTTATATGAACTTAGTCCAAGTTTCTTTATTCACATTCATTCCATAAACTACCTCCAA-----------AAAAGCACACTTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026203 333 + 81552678 TCCTTCAGAACTGTGATGAGCTTTTGAAAGGAGCAGCTCTGGGGAGCCCTGACAGCTTAGCTATTTCCAGCAGACTCCTTCTC------TGTCTTCCCCCAAGAGCCAAC---------------AAGAAGAGCCGCTCTAGCTTT--AAATGCACTTTCCCCCATCACCTGTCCATCCATTGGTTTGCCAAATCTTAGGCT-GTTTTTCTATCATTTCTCTCCAACCCGTCACGACCCGCAGTTCGAGCTCTCATTGCAGTGTCGCTTTGGCCTCTTACATGAACTTAGTTCAAGTTTCTTTATTCGCATTCATTCCATAAACTACCTCCAAAAGAA-CTCTTAAAAGCACACTTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288676 321 + 108979918 TCCTTCAGAACTGTGATGAGCTTTGGAAAGGAGCAGCTCTGGGGAGCCCTGACAGCTTAGCTGTTTCCAACAAGCTCCTTCTCCTTCTTCCTCTTCCCGCAAGAGCCGAC---------------AAGAAGAGCCAC-------------------TTTCCCCCATCACCTGTCCATCCACTGGTTTGCCAAATCCTAGGCT-GTTTTTCTATCATTCCTCTCCAACCCATCACCACCCGCAGTTCAAGCTCTCATTGCAGTGTTGCTTTAGCCTCCTATATGAACTTAGTTCAAGTTTCTTTATTCACAATCATTCCATCAACTACCTCCAAAAAAA-CTCT-TAAAGCACACTTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5001443 320 - 111193037 TCCTTCAGAACTGTGATGAGCGTTGGAAAGGAGCAGCTCTGGGGAGCCCTGATGGCTTAGCTGTTTCCAACAAGCTCCTTCTCCTCCTTCCTCTTCCCGCAAGAGCCGAC---------------AAGAAGAGCCAC--------------------TTCCCCCATCACCTGTCCATCCACTGGTTTGCCAAATCCTAGGCT-GTTTTTCTATCATTCCTCTCCAACCCATCACCACCCGCAGTTCAAGCTCTCATTGCAGTGTTGCTTTAGCCTCCTATATGAACTTAGTTCAAGTTTCTTTATTCACATTCATTCCATCAACTACCTCCAAAAAAA-CTCT-TAAAGCACACTTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396213 321 + 3644372 TCCTTCAGAACTGTGATGAGCTTTGGAAAGGAGCAGCTCTGGGGAGCCCTGACAGCTTAGCTGTTTCCAACAAGCTCCTTCTCCTTCTTCCTCTTCCCGCAAGAGCCGAC---------------AAGAAGAGCCAC-------------------TTTCCCCCATCACCTGTCCATCCACTGGTTTGCCAAATCCTAGGCT-GTTTTTCTATCATTCCTCTCCAACCCATCACCACCCGCAGTTCAAGCTCTCATTGCAGTGTTGCTTTAGCCTCCTATATGAACTTAGTTCAAGTTTCTTTATTCACATTCATTCCATCAACTACCTCCAAAAAAA-CTCT-TAAAGCACACTTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3350866 321 - 10304083 TCCTTCAGAACTGTGATGAGCTTTGGAAAGGAGCAGCTCTGGGGAGCCCTGACAGCTTAGCTGTTTCCAGCAAGCTCCTTCTCCTTCTTCCTCTTCCCGCAAGAGCCGAC---------------AAGAAGAGCCGC-------------------TTTCCCCCATCTCCTGTCCATCCACTGGTTTGCCAAATCCTAGGCT-GTTTTTCTATCATTCCTCTCCAACCCATCACCACCCGCAGTTCAAGCTCTCATTGCAGTGTTGCTTTAGCCTCCTATATGAACTTAGTTCAAGTTTCTTTATTCACATTCATTCCATCAACTACCTCCAAAAAAA-CTCT-TAAAGCACACTTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3433774 320 - 107702431 TCCTTCAGAACTGGGATGAGCTTTTGAAAGGAGCAGCTCTGGGGAGCCCTGACAGCTTAGCTGTTTCCAGCAGGCTCCTCCTCCTTCTTCCTCTTCCCGCAAGAGCCGAC---------------AAGAAGAGCTGC-------------------TTTCCCCCATCACCTGTCCATCCACTGGTTTGCCAAATCCTAGGCT-GTTTTTCTATCATTTCTCTCCAACCCATCACCACCCGCAGTTCAAGCTCTCATTGCAGTGTTGCTTTAGCCTCCTATATGAACTTAGTTCAGGTTTCTTTATTCCCATTCATTCCATCAACTACCTCC-AAAAAA-CTCT-TAAAGCACACTTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 968426 321 + 1565135 TCCTTCAGAACTGTGATGAGCTTTTGAAAGGAGCAGCTCTGGGGAGCCCTGACAGCTTAGCTGTTTCCAGCAAGCTCCTTCTCCTTCTTCCTCTTCCCGCAAGAGCCGAC---------------AAGAAGAGCCGC-------------------TTTCCCCCATCTCCTGTCCATCCACTGGTTTGCCAAATCCTAGGCT-GTTTTTCTGTCATTCCTCTCCAACCCATCACCACCCGCAGTTCAAGCTCTCATTGCAGTGTTGCTTTAGCCTCCTATATGAACTTAGTTCAGGTTTCTTTATTCACATTCATTCCATCAACTACCTCCAAAAAAA-CTCT-CAAAGCACACTTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339578 321 - 13651311 TCCTTCAGAACTGTGATGAGCTTTGGAAAGGAGCAGCTCTGGGGAGCCCTGACAGCTTAGCTATTTCCAGCAGGCTCCTTCTCCTTCTTCCTCTTCCCGCAAGAGCTGAC---------------AAGAAGAGCCGC-------------------TTTCCCCCATCACCTGTCCATCCACTGGTTTGCCAAATCCTAGGCT-GTTTTTCTATCATTTCTCTCCAACCCATCACCACCCGCAGTTCAGGCTCTCATTGCAGTGTTGCTATAGCCTCCTATATGAACTTAGTTCACGTTTCTTTATTCACATTCATTCCATAAACTACCTCCAAAAAAA-CTCT-TAAAGCACACTTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3432071 328 - 108792865 TCCTTGAGAACCGCGAGGAGCTTTTGAAAGGAGCGGCTCTGGGGGGCCCTGACAGTTTAGCTATTTTCAGCAGGCTCCTTCTCCTTCTCCCTCTTCCC-CAAGAGCTGAC---------------GAGAAGAGCCGCTCCAGCTTT--AAACGTACTTCCCCCCATCACCTGTCCAT-CATTGGTTTGCTAAACCCT-GACC-GTTTGTGTAGCGTTTCT------CCCACCACCGCCCGCAGTTCAAGCTCTCATTGCAGCGTTGCGTCAGCCTCCTATAGGAACTTACCTCAGGTTTCTTTATTCACATTCATTCCATAAACTACCTCCAA-AAAA-GTCT-TAAATCACAGTTTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3086466 330 - 7082604 TCCTTCAGAACTGTGAGGAGCTTTTCAAAGGAGCAGCTCTGGGGAGCCCTGACAGCTTAGCTATTTTCAGCAGGCTCCTCCTCCTTCTCCCTCTTCCC-CAAGAGCTGAC---------------AAGAAGAGCCGCTCTAGCTTT--AAACGCGCTTTCTGCCATCACCTGTCCATCCATTGGTTTGCTAAATCCTAGACT-GTTTTTCTAGCATTTCT------CTCACCACCGCCTGCAGTTGAAGCTCTCATTGCAGTGTTGCTTCAGCCTCCTATAGGAACTTACTTCAGGTTTCTTTATTCACATTCATTCCATAGACTACCTCCAA-AAAA-GTCT-TAAATCACAGTTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 572224 330 + 5243153 TCCTTCAGAACTGTGAGGAGCTTTTGAAAGGAGCAGCTCTGGGGAGCCCTGACAGCTTAGCTATTTTCAGCAGGCTCCTTCTCCTTCTCCCTCTTCCC-CAAGAGCTGAC---------------AAGAAGAGCCGCGCTAGCTTT--AAACACACTTTCCCCCATCACCTGTCCATCCATTGGTTTGCTAAACCCTAGACT-GTTTTTCTAGCATTTCT------CCCAGCACCGCCTGCAGCTCAAGCTCTCACTGCAGTGTTGCTTCAGCCTCCTAGAGGAGCTTACTTCAGATTTCTGTATGCACATTCATTCCGTAAACTACCTCCAA-AAAA-GTCT-TAAATCACAGTTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1905443 331 - 1938448 TCCTTCAGAACTGTGAGGAGCTTTTGAAAGGAGCAGCTTTGGGGAGCCCTGACAGCTTAGCTATTTTCAGCAGGCTTCTTCTCCTTCTCCCTCTTCCC-CAAGAGCTGAC---------------AAGAAGAGCCACTCTAGCTTT--AAACGCACGATCCCCCATCACCTGTCCATCCATTGGTTTGCTAAATCCTAGACTAAACAGTCTAGCGTTTCT------CCCACCACCGCCTGCAGTTCAAGCTCTCATTGCAGTGTGGCTTCAGCCTCCTATAGGAACTTACTTCAGGTTTCTTTATTCACATTCATTCTGTAAACTACCTCCAA-AAAA-GTCT-TAAATCACAGTTTT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2514099 312 + 5252280 --CTCCAAAACCGTGAAGAGCTTCTGACAGGGATGAGTCT-GGGAGAGCTGCTGGTACAGTTATTTCAAACAGGCTCCTTTTTCTGCAGTGTCTTCCCCAAAAAGTGGACGGAGCACAGGAA---GATAAGAGCAGCTCTGGCTTTAGAGACGTGTCTCCCCCCACCCGCCGTCC--CCACTGGTTCCCCAAATC-------------------------------CCCATCACTGTCTCCCATTC-AGCCATCCTGGGATTGCTGCTTCAGCCTCCTGTGTGAACTTACTTCAAATCTGTCGGT--ACATTTGCTCAGCAAACTGCCACTGA-GACA-GTC--TCACCTGCCGTTCT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 541487 332 + 2232271 TACTCCAGAACAGTGAAAAGTTCTTGAGAGGAATGATACTGGGGATATCTGATGATTTATATACT---------CCCTTTTTCTTTCATCTTTTCCCATCAAGACTTGACCATGTATAGAAAGACAAGATAAAGAACTCTAACTTT--AGATGT-------------ACCTCTCTATCCATAGGTTTGCTAAATCATAGATT-ATTTCTCTTCTATATCTCTAAAATCTATTACTACCCATAGCTTAGGCCCTTGTCAGAATACTGCTTTAGCCTCCTGTGTAAACTTATTTCAGGTCTCTCTATTCACGTTTATTCAAAAAATTACCTCCAAAATAATCTTT-TAAAGCACTGTTTT i dasNov3.JH580157 C 0 I 387 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I a score=288561.000000 s hg38.chr2_KI270769v1_alt 32987 30 + 120616 GATCATCTCACTTTCCTGCTGGAAAACTGT s panTro5.chr2A 3485286 30 + 111504155 GATCATCTCACTTTCCTGCTGGAAAACTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355480 30 + 114371477 GATCATCTCACTTTCCTGCTGGAAAACTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231065 30 + 637652 GATCATCTCACTTTCCTGCTGGAAAACTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026536 30 + 81552678 GATCATCTCACTTTCCTGCTCGAAAACTGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3288997 28 + 108979918 GATCATCTCACTTTCCTGCTTGAAAAC--T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5001763 28 - 111193037 GATCATCTCACTTTCCTGCTTGAAAAC--T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396534 28 + 3644372 GATCATCTCACTTTCCTGCTTGAAAAC--T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3351187 28 - 10304083 GATCATCTCACTTTCCTGCTTGAAAAC--T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3434094 28 - 107702431 GATCATCTCACTTTCCTGCTTGAAAAC--T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 968747 28 + 1565135 GATCATCTCACTTTCCTGCTTGAAAAC--T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339899 28 - 13651311 GATCATCTCACTTTCCTGCTTAAAAAC--T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3432399 30 - 108792865 GATCATCTTACTTTCCTGCTCAGAAACTAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3086796 30 - 7082604 GATCGTCTCACTTTCCTGCTCAAAAACTAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 572554 30 + 5243153 GATCATTTCACTTTCCTGCCCAAAAACTAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1905774 30 - 1938448 GATAATCTCATTTTCCTGCTCAAAAACTAT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2514411 29 + 5252280 GGACATCCTG-GTCCCTGCCAAGCAGCTGT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 542206 30 + 2232271 GATCATTTCACTTTCCTACTCAAAAATTGT i dasNov3.JH580157 I 387 I 1 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I a score=1918771.000000 s hg38.chr2_KI270769v1_alt 33017 194 + 120616 gcccggcgcagtggcgcattgactgtagtcccagctactggggagactgaggcaggaagatcacttgggcctggggcttctgggccgtagtgcactttgttgatcaggtgttggcact-agctcaacaccaatatggtgacctccctagagccaggaa--ccaccaggctgcctaaagagggtgaaccaccctcctt s panTro5.chr2A 3485316 194 + 111504155 gcccagcgcagtggcgcattgactgtagtcccagctactggggagactgaggcaggaagatcacttgggcccaggacttctgggccgtagtgcactttgttgatcaggtgttggcact-agctcaacaccaatatggtgacctccctggagccaggaa--ccaccaggctgcctaaagagggtgaaccaccctcctt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355510 194 + 114371477 gcccagcgcagtggcgcattgactgtagtcccagctactggggagactgaggcaggaagatcacttgggcccaggacttctgggccgtagtgcactttgttgatcagatgttggcact-agctcaacaccaatatggtgacctccctggagccaggaa--ccaccaggctgcctaaagagggtgaaccaccctcctt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231095 194 + 637652 gcccggcgcagtggcacattgactgtagtcccagctactggggagactgaggcaggaagatcacttggtcccgggagttctgggccgtagtgcactttgttgatcaggtgttggcact-agctcaacaccaatatggtgacctccctggagccaggaa--ccaccaggctgcctaaagagggtgaaccaccctcctt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026566 193 + 81552678 gcccagcgcagtggcgcattgactgtagtcccagctactggggagactgaggcagggggatcacttgggcccgggagttctgggccgtagtgcactttgttgatcaggtgttggcact-agctcaacaccaatatggtgacctccccggagccaggga--ccaccaggctgcctaaagagggtgaacca-cctcctt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3289025 193 + 108979918 gcccggcatagtggcaca-tgactgtagtcccagctactggggagactgaggcaggagggtcacttgggcccaggagttctgggccgtagtgcactttgctgatcacgtgttggcact-agctcaagaccaatatggtgacctcctgggagccaggga--ccaccaggctgcctaaagagggtcaaccaccctcctt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5001791 193 - 111193037 gcccggcatagtggcaca-tgactgtagtcccagctactggggagactgaggcaggagggtcacttgggcccaggagttctgggccgtagtgcactttgctgatcacgtgttggcact-agctcaagaccaatatggtgacctcctgggagccaggga--ccaccaggctgcctaaagagggtgaaccaccctcctt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396562 193 + 3644372 gcccggcatagtggcaca-tgactgtagtcccagctactggggagactgaggcaggagggtcacttgggcccaggagttctgggccgtagtgcactttgctgatcacgtgttggcact-agctcaagaccaatatggtgacctcctgggagccaggga--ccaccaggctgcctaaagagggtgaaccaccctcctt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3351215 193 - 10304083 gcccggcatagtggcaca-tgactgtagtcccagctactggggagactgaggcaggagggtcacttgggcccaggagttctgggccgtagtgcactttgctgatcacgtgttggcact-agctcaagaccaatatggtgacctcctgggagccaggga--ccaccaggctgcctaaagagggtgaaccaccctcctt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3434122 193 - 107702431 gcccagcgcagtggcaca-tgactgtggccccagctactggggagactgaggcaggagggtcacttgggcccaggagttctgggccgtagtgcactttgccgatcacgtgttggcact-agctcaagaccaatatggtgacctcctgggagccaggga--ccaccaggctgcctaaagagggtaaaccaccctcctt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 968775 193 + 1565135 gcccggcatagtggcaca-tgactgtagtcccagctactggggagactgaggcaagagggtcacttgggcccaggagttctgggccgtagtgcactttgctgatcacgtgttggcact-agctcaagaccaatatggtgacctcctgggagccaggga--ccaccaggctgcctaaagagggtgaaccaccctcctt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3339927 192 - 13651311 gcccggcgcagtggcaca-tgactgtagtcccagctactggggagactgaggcaggagggtcacttgggcccaggagttctgggccgtagtgcactttgccgatcacgtgttggcact-agctcaagaccaatatggtgacctcctgggagccaggga--ccaccaggctgcctaaagagggtgaaccaccc-cctt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3432429 192 - 108792865 gcccagcaccgtggcatg-tgactgaagtcccagccactggggagaccaacgtgggagggtcacttgggcct-ggagttccaggctgtggcacacttggttgatcaggtgtcggcact-gacccaaccccaatatgatgacctcccaggatccaggga--ccaccaggctgcctaaggagggtgaaccagccTCctt i calJac3.chr14 C 0 I 27 s saiBol1.JH378218 3086826 192 - 7082604 gcccggcacagtggcacg-tgactgaagtcccggccactggggagaccgaggcgggagggtcacctgggccc-ggagttccgggctgtggtgcactttgttggtcaggtgtcggcact-aacccaaccccaatatgatgacctcccaggagccaggga--ccaccaggctgcctaaggaggatgaaccagccTCctt i saiBol1.JH378218 C 0 I 27 s cebCap1.NW_016107454v1 572584 192 + 5243153 gcccggcacagtggcacg-tgactgaagtcccagccactggggagaccgaggtgggagggttgcttgggccc-agagttccaggctgtggcgcacttcgttggtcaagtgtcggcact-gacccaaccccaatatgatgacctcccaggagccaggga--ccactgggctgcctaaggagggagaaccagccTCctt i cebCap1.NW_016107454v1 C 0 I 103 s aotNan1.NW_018507213v1 1905804 192 - 1938448 gcccggcacagtggcacg-tgactgaagtcccagccactggggagaccgaggtgggagggtcgctggggccc-ggggttccgggctgtggcgcacttggttgatcaggtgtcggcact-gacccaaccccagtatgatgacctcccaggagccgggga--ccaccaggctgcctaaggagggggaagcagccTCctt i aotNan1.NW_018507213v1 C 0 I 105 s otoGar3.GL873658 2514440 168 + 5252280 GCCAGgcg-----------ctcctgtaaccccagcttcgcaggaggccgaagcgggaggatcacttgagcccaggacttgtgggcgatagtgcact--gctgatcgggtgtccaccctgagttccacatcagtgtactgacctcctgggagtgggggaccccaccaagtta-ctaaggagga--------------- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e dasNov3.JH580157 542236 1 + 2232271 I a score=10536.000000 s hg38.chr2_KI270769v1_alt 33211 9 + 120616 tcca-------------------------------------------------------------actag---- s panTro5.chr2A 3485510 9 + 111504155 tcca-------------------------------------------------------------actag---- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355704 9 + 114371477 tcca-------------------------------------------------------------actag---- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231289 9 + 637652 tcca-------------------------------------------------------------gctag---- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026759 9 + 81552678 tcca-------------------------------------------------------------actag---- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3289218 9 + 108979918 tcca-------------------------------------------------------------actag---- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5001984 9 - 111193037 tcca-------------------------------------------------------------actag---- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396755 9 + 3644372 tcca-------------------------------------------------------------actag---- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3351408 9 - 10304083 tcca-------------------------------------------------------------actag---- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3434315 9 - 107702431 tcca-------------------------------------------------------------actag---- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 968968 9 + 1565135 tcca-------------------------------------------------------------actag---- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3340119 9 - 13651311 tcca-------------------------------------------------------------actag---- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3432648 70 - 108792865 cccagaggcagagtagacggtggttgccagggctgggggtcggggggaGGGCAGGCGAGGTCTACACTAG---- i calJac3.chr14 I 27 I 6 s saiBol1.JH378218 3087045 70 - 7082604 cccaggagcagagtagttggtggttgctgaggctgggggtcggggggaGGGCAGGCGAGGTCTACACTAG---- i saiBol1.JH378218 I 27 I 6 s otoGar3.GL873658 2514608 8 + 5252280 ------------------------------------------------------------------ctggcctg i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e dasNov3.JH580157 542236 1 + 2232271 I e cebCap1.NW_016107454v1 572776 103 + 5243153 I e aotNan1.NW_018507213v1 1905996 105 - 1938448 I a score=300965.000000 s hg38.chr2_KI270769v1_alt 33220 27 + 120616 gtctgaaacggagctagtcaaGAGC--TG s panTro5.chr2A 3485519 27 + 111504155 gtctgaaacggagctagtcaaGATC--TG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355713 27 + 114371477 gtctgaaacggagctagtcaaGATC--TG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231298 27 + 637652 gtctgaaacggagctagtcaaGAGC--TG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026768 27 + 81552678 gtctgaaacagagctagtcaaGAGC--TG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3289227 27 + 108979918 gtctgaaacggagctagtcaaGAGC--TG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5001993 27 - 111193037 gtctgaaacggagctagtcaaGAGC--TG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396764 27 + 3644372 gtctgaaacggagctagtcaaGAGC--TG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3351417 27 - 10304083 gtctgaaacagagctagtcaaGAGC--TG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3434324 27 - 107702431 gtctgaaacggagctagtcaaGAGC--TG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 968977 27 + 1565135 gtctgaaacggagctagtcaaGAGC--TG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3340128 27 - 13651311 gtctgaaacggagctagtcaaGAGC--TG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3432724 27 - 108792865 GGCTGAAACGGAGCTAGTCAAGAGC--TG i calJac3.chr14 I 6 C 0 s saiBol1.JH378218 3087121 27 - 7082604 GTCTGAAATGAAGCTAGTCAAGAGC--TG i saiBol1.JH378218 I 6 C 0 s cebCap1.NW_016107454v1 572879 27 + 5243153 GTCTGAAACGGAGCTAGTCAAGAGC--TG i cebCap1.NW_016107454v1 I 103 C 0 s aotNan1.NW_018507213v1 1906101 27 - 1938448 GTCTGAAACGGAGCTAGTCAAGAGC--TG i aotNan1.NW_018507213v1 I 105 C 0 s otoGar3.GL873658 2514616 27 + 5252280 gctggaaacagag--ggtcaaaaACCATG i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e dasNov3.JH580157 542236 1 + 2232271 I a score=445250.000000 s hg38.chr2_KI270769v1_alt 33247 40 + 120616 GATAGTTTCCCATTGGCTACCATGTGAAATTTCATCTTCT s panTro5.chr2A 3485546 40 + 111504155 GATAGTTTCCCATTGCCTACCATGTGAAATTTCATCTTCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355740 40 + 114371477 GATAGTTTCCCATTGCCTACCATGTGAAATTTCATCTTCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231325 40 + 637652 GATAGTTTCCCATTGCCTACCATGTGAAATTTCATCTTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026795 40 + 81552678 GACAGTTTCCCATTGCCTACCATGTGAAATTTCATCTTCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3289254 37 + 108979918 GATAGTTTCCCATTGCCTACCATGCGAAATTTCA---TCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5002020 40 - 111193037 GATAGTTTCCCATTGCCTACCATGCGAAATTTCATCTTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396791 40 + 3644372 GATAGTTTCCCATTGCCTACCATGCAAAATTTCATCTTCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3351444 40 - 10304083 GATAGTTTCCCATTGCCTACCATGCGAAATTTCATCTTCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3434351 40 - 107702431 GATAGTTTCCCATTGCCTACCATGCAAAATTTCATCTTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 969004 40 + 1565135 GATAGTTTCCCATTGCCTACCATGCGAAATTTCATcttct i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3340155 40 - 13651311 GATAGTTTCCCATTGCCTACCATGCGAAATTTCATCTTCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3432751 40 - 108792865 GATGGCTTCCCATTGCCTCCCATGCGAAATCTCGTCTTCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3087148 40 - 7082604 GATGGCTTCCCATTGCCTCCCATGCGAACTCTCATCTTCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 572906 40 + 5243153 GATGGCTTCCCATTGCCTCCCATGCGAAATCTCATCTTCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1906128 40 - 1938448 GGTGGCTTCCCATTGCCTCCCGTGCGAAATCTCATCTTCT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2514643 40 + 5252280 ACTAGCTTCCCACTGCCTGGCAAATGGTATGTCATCTCCT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 542237 40 + 2232271 AATAGTTTCCCATTGCCCACCAATCTAAATTGAATCTCCT i dasNov3.JH580157 I 1 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I a score=13600.000000 s hg38.chr2_KI270769v1_alt 33287 1 + 120616 C s panTro5.chr2A 3485586 1 + 111504155 C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355780 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231365 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026835 1 + 81552678 C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3289291 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5002060 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396831 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3351484 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3434391 1 - 107702431 C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 969044 1 + 1565135 c i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3432791 1 - 108792865 C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3087188 1 - 7082604 C i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 572946 1 + 5243153 C i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1906168 1 - 1938448 C i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2514683 1 + 5252280 C i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 542277 1 + 2232271 C i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e colAng1.NW_012118821v1 3340195 0 - 13651311 C a score=127.000000 s hg38.chr2_KI270769v1_alt 33288 1 + 120616 G s panTro5.chr2A 3485587 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355781 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231366 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026836 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s chlSab2.chr14 3434392 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3432792 1 - 108792865 T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3087189 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 572947 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1906169 1 - 1938448 A i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2514684 1 + 5252280 A i otoGar3.GL873658 C 0 I 2 s dasNov3.JH580157 542278 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e colAng1.NW_012118821v1 3340195 0 - 13651311 C e manLeu1.NW_012104432v1 969045 0 + 1565135 C e cerAty1.NW_012000820v1 3351485 0 - 10304083 C e macNem1.NW_012011978v1 3396832 0 + 3644372 C e macFas5.chr13 5002061 0 - 111193037 C e rheMac8.chr13 3289292 0 + 108979918 C a score=40018.000000 s hg38.chr2_KI270769v1_alt 33289 28 + 120616 TGTTGTATGC---AAACCCT-CAGACCATGAC s panTro5.chr2A 3485588 28 + 111504155 TGTTGTATGC---AAACCCT-CAGACCATGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355782 28 + 114371477 TGTTGTATGC---AAACCCT-CAGACCATGAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231367 28 + 637652 TGTTGTATGC---AAACCCT-CAGACCATGAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026837 28 + 81552678 TGTTGTATGC---AAACCCT-CAGACCATGAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3289292 5 + 108979918 ----gtgtg----------------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5002061 5 - 111193037 ----gtgtg----------------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396832 5 + 3644372 ----gtgtg----------------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3351485 5 - 10304083 ----gtgtg----------------------- i cerAty1.NW_012000820v1 C 0 C 0 s calJac3.chr14 3432793 28 - 108792865 TGTTGTGTGC---AGACCCT-CAGACCATGAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3087190 28 - 7082604 TGTTGTGTGC---AGACCCT-CAGACCATGAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 572948 28 + 5243153 TGTTGTGTGC---AGACCCT-CAGACCATGAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1906170 28 - 1938448 CGTTGTGTGC---AGACCCT-CGGACCGTGAC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2514687 29 + 5252280 GGCCGTGCGT---AAACCCTCCAAGGCATGAC i otoGar3.GL873658 I 2 I 658 s dasNov3.JH580157 542279 30 + 2232271 --CCGTGTACATGAAACCCACCAGAATATGGC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e colAng1.NW_012118821v1 3340195 0 - 13651311 C e manLeu1.NW_012104432v1 969045 0 + 1565135 C e chlSab2.chr14 3434393 0 - 107702431 C a score=41263.000000 s hg38.chr2_KI270769v1_alt 33317 30 + 120616 AGGCtatgtgtacactatggaatggttaaa s panTro5.chr2A 3485616 30 + 111504155 AGGCtatgtgtacactatggaatggttaaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355810 30 + 114371477 AGGCtatgtgtacactatggaatggttaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231395 30 + 637652 AGGCtatgtgtacactgtggaatggttaaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026865 30 + 81552678 AGAatatgtagacactatggaatggttaaa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3289297 6 + 108979918 ----tgtgtg-------------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5002066 6 - 111193037 ----tgtgtg-------------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396837 6 + 3644372 ----tgtgtg-------------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3351490 6 - 10304083 ----tgtgtg-------------------- i cerAty1.NW_012000820v1 C 0 C 0 s calJac3.chr14 3432821 24 - 108792865 AAGatatgtatacactgtggaatg------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3087218 24 - 7082604 GAGATACGTATACACTGTGGAATG------ i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 572976 30 + 5243153 gagatatgtatacactgtggaatggctaaa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1906198 30 - 1938448 gagatacgtatacactgtggaatggctaaa i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 542309 24 + 2232271 ------CATAGACACTATGATATAATGAAA i dasNov3.JH580157 C 0 I 45 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e otoGar3.GL873658 2514716 658 + 5252280 I e colAng1.NW_012118821v1 3340195 0 - 13651311 C e manLeu1.NW_012104432v1 969045 0 + 1565135 C e chlSab2.chr14 3434393 0 - 107702431 C a score=5922.000000 s hg38.chr2_KI270769v1_alt 33347 3 + 120616 tca s panTro5.chr2A 3485646 3 + 111504155 tca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355840 3 + 114371477 tca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231425 3 + 637652 tca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026895 3 + 81552678 tca i nomLeu3.chr19 C 0 C 0 s cebCap1.NW_016107454v1 573006 3 + 5243153 tca i cebCap1.NW_016107454v1 C 0 I 66 s aotNan1.NW_018507213v1 1906228 3 - 1938448 tca i aotNan1.NW_018507213v1 C 0 I 57 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e saiBol1.JH378218 3087242 0 - 7082604 C e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e dasNov3.JH580157 542333 45 + 2232271 I e otoGar3.GL873658 2514716 658 + 5252280 I e calJac3.chr14 3432845 0 - 108792865 C e colAng1.NW_012118821v1 3340195 0 - 13651311 C e manLeu1.NW_012104432v1 969045 0 + 1565135 C e chlSab2.chr14 3434393 0 - 107702431 C e cerAty1.NW_012000820v1 3351496 0 - 10304083 C e macNem1.NW_012011978v1 3396843 0 + 3644372 C e macFas5.chr13 5002072 0 - 111193037 C e rheMac8.chr13 3289303 0 + 108979918 C a score=36258.000000 s hg38.chr2_KI270769v1_alt 33350 44 + 120616 agctaaatcgcatgcattgcctcgcatgcctttgtgtgtgtgtg s panTro5.chr2A 3485649 32 + 111504155 agctaaattgcatgcattgcctcgcatgcctt------------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355843 42 + 114371477 agctaaattgcatgcattgcctcgcatgcctt--tgtgtgtgtg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231428 32 + 637652 agctaaatcgcatgcattgcctcacatgcctg------------ i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026898 44 + 81552678 agctaaatcacatgcattgcctcgcatgcgtgcatgcgtgcgtg i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3432845 28 - 108792865 -gctaaagcacatgcgttgtctcacatgc--------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3087242 28 - 7082604 -ACTAAATCACATGTGTTGTCTCTCATGC--------------- i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e dasNov3.JH580157 542333 45 + 2232271 I e otoGar3.GL873658 2514716 658 + 5252280 I e cebCap1.NW_016107454v1 573009 66 + 5243153 I e aotNan1.NW_018507213v1 1906231 57 - 1938448 I e colAng1.NW_012118821v1 3340195 0 - 13651311 C e manLeu1.NW_012104432v1 969045 0 + 1565135 C e chlSab2.chr14 3434393 0 - 107702431 C e cerAty1.NW_012000820v1 3351496 0 - 10304083 C e macNem1.NW_012011978v1 3396843 0 + 3644372 C e macFas5.chr13 5002072 0 - 111193037 C e rheMac8.chr13 3289303 0 + 108979918 C a score=17572.000000 s hg38.chr2_KI270769v1_alt 33394 6 + 120616 tgtgtg s panTro5.chr2A 3485681 4 + 111504155 --tgtg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355885 6 + 114371477 tgtgtg i panPan2.chr2A C 0 C 0 s nomLeu3.chr19 3026942 6 + 81552678 tgtgtg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3289303 6 + 108979918 tgtgtg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5002072 6 - 111193037 tgtgtg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396843 6 + 3644372 tgtgtg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3351496 6 - 10304083 tgtgta i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3434393 6 - 107702431 tgtgtg i chlSab2.chr14 C 0 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e saiBol1.JH378218 3087270 0 - 7082604 C e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e dasNov3.JH580157 542333 45 + 2232271 I e otoGar3.GL873658 2514716 658 + 5252280 I e cebCap1.NW_016107454v1 573009 66 + 5243153 I e aotNan1.NW_018507213v1 1906231 57 - 1938448 I e calJac3.chr14 3432873 0 - 108792865 C e colAng1.NW_012118821v1 3340195 0 - 13651311 C e manLeu1.NW_012104432v1 969045 0 + 1565135 C e gorGor5.CYUI01015435v1 231460 0 + 637652 C a score=20319.000000 s hg38.chr2_KI270769v1_alt 33400 7 + 120616 tgtgtgt s panTro5.chr2A 3485685 7 + 111504155 tgtgtgt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355891 7 + 114371477 tgtgtgt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231460 1 + 637652 ------t i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026948 7 + 81552678 tgtgtgt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3289309 7 + 108979918 tgtgtgt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5002078 5 - 111193037 --tgtgt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396849 7 + 3644372 tatgtgt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3351502 5 - 10304083 --tgtgt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3434399 7 - 107702431 tgtgtgt i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3340195 7 - 13651311 TGTGTGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3432873 1 - 108792865 ------t i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3087270 1 - 7082604 ------T i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e dasNov3.JH580157 542333 45 + 2232271 I e otoGar3.GL873658 2514716 658 + 5252280 I e cebCap1.NW_016107454v1 573009 66 + 5243153 I e aotNan1.NW_018507213v1 1906231 57 - 1938448 I e manLeu1.NW_012104432v1 969045 0 + 1565135 C a score=312385.000000 s hg38.chr2_KI270769v1_alt 33407 49 + 120616 gtgtgtgtgtaatgagaacactgaaaatctgtcttagcaatttttagta s panTro5.chr2A 3485692 49 + 111504155 gtgtgtgtgtaatgagaacactgaaaatctgtcttagcaatttttagta i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355898 49 + 114371477 gtgtgtgtgtaatgagaacactgaaaatctgtcttagcaatttttagta i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231461 49 + 637652 gtgtgtgtgtaatgagaacactgaaaatctgtcttagcaatttttagta i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3026955 49 + 81552678 gcacgcgtgtaatgagaacactgaaaatctgtcgtagcaatttttagta i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3289316 49 + 108979918 gtgtgtgtgtAAtgagaacactgaaaatctgtcttagcaatttttagta i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5002083 49 - 111193037 gtgtgtgtgtaatgagaacactgaaaatctgtcttagcaatttttagta i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396856 49 + 3644372 gtgtgtgtgtAAtgagaacactgaaaatctgtcttagcaatttttagta i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3351507 49 - 10304083 gtgtgtgtgtAAtgagaacactgaaaatctgtcttagcaatttttagta i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3434406 49 - 107702431 gtgtgtgtATAACgagaacactgaaaatctgtcttagcaatttttagta i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 969045 49 + 1565135 gtgtgtgtgtaatgagaacactgaaaatctgtcttagcaatttttagta i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3340202 49 - 13651311 GTGTGTGtgtagtgagaacactgaaaatctgtcttagcaatttttagta i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3432874 24 - 108792865 gtgtgtgtgtagtg-------------------------atttttagta i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3087271 24 - 7082604 GTGAGTGTGtagcg-------------------------atttttagta i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e dasNov3.JH580157 542333 45 + 2232271 I e otoGar3.GL873658 2514716 658 + 5252280 I e cebCap1.NW_016107454v1 573009 66 + 5243153 I e aotNan1.NW_018507213v1 1906231 57 - 1938448 I a score=28595.000000 s hg38.chr2_KI270769v1_alt 33456 4 + 120616 taca s panTro5.chr2A 3485741 4 + 111504155 taca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355947 4 + 114371477 tata i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231510 4 + 637652 taca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3027004 4 + 81552678 taca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3289365 4 + 108979918 tacg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5002132 4 - 111193037 tacg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3396905 4 + 3644372 tacg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3351556 4 - 10304083 tacg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3434455 4 - 107702431 tacg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 969094 4 + 1565135 tacg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3340251 4 - 13651311 tacg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3432898 4 - 108792865 taca i calJac3.chr14 C 0 I 9 s saiBol1.JH378218 3087295 4 - 7082604 taca i saiBol1.JH378218 C 0 I 9 s otoGar3.GL873658 2515374 4 + 5252280 TACC i otoGar3.GL873658 I 658 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e dasNov3.JH580157 542333 45 + 2232271 I e cebCap1.NW_016107454v1 573009 66 + 5243153 I e aotNan1.NW_018507213v1 1906231 57 - 1938448 I a score=74113.000000 s hg38.chr2_KI270769v1_alt 33460 10 + 120616 t----tgtaactgt s panTro5.chr2A 3485745 10 + 111504155 t----tgtaactgt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355951 10 + 114371477 t----tgtaactgt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231514 10 + 637652 t----tgtaactgt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3027008 10 + 81552678 t----tgtaactgt i nomLeu3.chr19 C 0 I 1 s rheMac8.chr13 3289369 14 + 108979918 ttgtttgtaactgt i rheMac8.chr13 C 0 I 1 s macFas5.chr13 5002136 14 - 111193037 ttgtttgtaactgt i macFas5.chr13 C 0 I 1 s macNem1.NW_012011978v1 3396909 14 + 3644372 ttgtttgtaactgt i macNem1.NW_012011978v1 C 0 I 1 s cerAty1.NW_012000820v1 3351560 14 - 10304083 ttgtttgtaactgt i cerAty1.NW_012000820v1 C 0 I 1 s chlSab2.chr14 3434459 14 - 107702431 ttgtttgtaactgt i chlSab2.chr14 C 0 I 1 s manLeu1.NW_012104432v1 969098 14 + 1565135 ttgtttgtaactgt i manLeu1.NW_012104432v1 C 0 I 1 s colAng1.NW_012118821v1 3340255 14 - 13651311 ttgtctgtaactgt i colAng1.NW_012118821v1 C 0 I 1 s calJac3.chr14 3432911 10 - 108792865 ----ttgtaactat i calJac3.chr14 I 9 I 1 s saiBol1.JH378218 3087308 10 - 7082604 ----ttgtaactgt i saiBol1.JH378218 I 9 I 1 s aotNan1.NW_018507213v1 1906288 10 - 1938448 ----ttgtaactgt i aotNan1.NW_018507213v1 I 57 I 1 s otoGar3.GL873658 2515378 10 + 5252280 ----TGGCGGCCGT i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e dasNov3.JH580157 542333 45 + 2232271 I e cebCap1.NW_016107454v1 573009 66 + 5243153 I a score=4125033.000000 s hg38.chr2_KI270769v1_alt 33470 440 + 120616 gtcaccacgtctacaatagatctcttgagcttattcct--tgcgtcactg-gattttgtttcctttgactaacatctctcaaacctcccctgcccggccctcct------ccccacccccagccccggcacccgcc-atctactct--gcttctgtgagttcagtgttttcagattccatgtgtaagtgaggtcacacggtgtttgtctttctgtgcctggcttgttt-gtctaacgtcatgtcccctaggctc----------atcc---acagcacaaacgacgggatttcctccatgaaagctgagtggtattccactgtgcgt-catgccacgttcctttatccgttcatccttcagcggacacttagTGAAATtcattcttctcatcagtaaagtcagatccaattaggtcatttctaagg-ta-cccttttaatc--ct--aagtctctggctctGCAGCTGTCTAA s panTro5.chr2A 3485755 440 + 111504155 gtcaccacgtcgacgatagatctcttgagcttattcct--tgcgtcactg-gattttgtttcctttgactaacatctctcaaacctcccctgcccggccctcct------ccccacccgcagccccggcacccgcc-atctactct--gcttctgtgagttcagtgttttcagattccatgtgtaagtgaggtcacacggtgtttgtctttctgtgcctggcttgttt-gtctaacgtcatgtcccctaggctc----------atcc---acagcacaaacgacgggatttcctccatgaaagctgagtggtattccactgtgcgt-cgtgccacgttcctttatccattcatccttcagcggacacttagTGAAATTCATTCTTCTCATCAGTAAAGTCAGATCCAATTAGGTCTTTTCTGAGG-TA-CCCTTTTAATC--CT--AAGTCTCTGGCTCTGCAGCTGTCTAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3355961 440 + 114371477 gtcaccacgtctacgatagatctcttgagcttattcct--tgcgtcactg-gattttgtttcctttgactaacatctctcaaacctcccctgcccggccctcct------ccccacccgcagccccggcacccgcc-atctactct--gcttctgtgagttcagtgttttcagattccatgtgtaagtgaggtcacacggtgtttgtctttctgtgcctggcttgttt-gtctaacgtcatgtcccctaggctc----------atcc---acagcacaaacgacgggatttcctccatgaaagctgagtggtattccactgtgcgt-cgtgccacgttcctttatccattcatccttcagcggacacttagTGAAATTCATTCTTCTCATCAGTAAAGTCAGATCCAATTAGGTCATTTCTGAGG-TA-CCCTTTTAATC--CT--AAGTCTCTGGCTCTGCAGCTGTCTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231524 440 + 637652 gtcaccacgtctacaatagatctcttgagcttattcct--tgcgtcactg-gattttgtttcctttgactaacatctctcaaacctcccctgcctggccctcct------ccccacccccagccccggcacccgcc-atctactct--gcttctgtgagttcagtgttttcagattccatgtgtaagtgaggtcacacggtgtttgtctttctgtgcctggcttgttt-gtctaacatcatgtcccctaggctc----------atcc---acagcacaaacgatgggatttcctccacgaaagctgagtggtattccactgtgtgt-cgtgccacgttcctttatccattcatccttcagcggacacttagTGAAATTCATTCTTCTCATCAGGAAAGTCAGATCCAATTAGATCATTTCTAAGG-TA-CCCTTTTAATC--CT--AAGTCTCTGGCTCTGCAGCTGTCTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3027019 443 + 81552678 gtcaccatgtctacaatagatctgtcgcgcttatttctcatgtctcactg-aattttgtttcctttgactaacatctctcaaacctcccctgccctgccctcct------ccccacccccagccccggcacccgcc-atctaccct--gcttctgtgagttcagtgttttcagattccatgtgtaagtgaggtcacacggtgtttgtcgttctgtgcctggcttgttt-gtctaacatcatgtcccctaggctc----------atcc---acatcacaaacgatgggatttcctccacgaaagctgagtggtattccactgtgtgt-cgtgccacgttcctttatccattcatccctcagcggacacttagTGAAATtcattcttctcatcagtaaagtcagatcaaattaggtcatttctaagg-taccccttttaatc--ct--aagtctctggctctGCAGCTGTCTAA i nomLeu3.chr19 I 1 C 0 s rheMac8.chr13 3289384 437 + 108979918 gtcaccatgtctacaatagatctcttgagcttattcctcctgtctcactg-aattttgtttcctttgactaacatctctcaaacctc-gctgccctgccctcctccccacccccacccccagccccggcacccgcc-atctactct--gcttctgtgagcccagtgttttcagattccatgtgtaagtgaggccccgcgctgtttgtctttctgtgcttggcttgtttcatctaacgtcatgtcccccaggctc----------atcc---acatcacaaacaatgggatttcccccatgaaagctgagtggtattccactgtgtgt-cgtaccacgttcctttatccattcatccctcagcggacacttggtgaaattcattcttCTCATCAGTAAAGTCAGATCACATTAGGT------------TC-CCCTTTTAATC--CT--AAGTCTCTGGCTGTGCAGCTCTGTAA i rheMac8.chr13 I 1 C 0 s macFas5.chr13 5002151 437 - 111193037 gtcaccatgtctacaatagatctcttgagcttattcctcctgtctcactg-aattttgtttcctttgactaacatctctcaaacctc-gctgccctgccctcctccccacccccacccccagccccggcacccgcc-atctactct--gcttctgtgagcccagtgttttcagattccatgtgtaagtgaggccccgcgctgtttgtctttctgtgcttggcttgtttcatctaacgtcatgtcccccaggctc----------atcc---acatcacaaacaatgggatttcccccatgaaagctgagtggtattccactgtgtgt-cgtaccacgttcctttatccattcatccctcagcggacacttggtgaaattcattcttCTCATCAGTAAAGTCAGATCACATTAGGT------------TC-CCCTTTTAATC--CT--AAGTCTCTGGCTGTGCAGCTCTGTAA i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3396924 438 + 3644372 gtcaccatgtctacaatagatctcttgagcttattcctcctgtctcactg-aattttgtttcctttgactaacatctctcaaacctctgctgccctgccctcctccccacccccacccccagccccggcacccgcc-atctactct--gcttctgtgagcccagtgttttcagattccatgtgtaagtgaggccccgcgctgtttgtctttctgtgcttggcttgtttcatctaacgtcatgtcccccaggctc----------atcc---acatcacaaacaatgggatttcccccatgaaagctgagtggtattccactgtgtgt-cgtaccacgttcctttatccattcatccctcagcggacacttggtgaaattcattcttCTCATCAGTAAAGTCAGATCACATTAGGT------------TC-CCCTTTTAATC--CT--AAGTCTCTGGCTGTGCAGCTCTGTAA i macNem1.NW_012011978v1 I 1 C 0 s cerAty1.NW_012000820v1 3351575 432 - 10304083 gtcaccatgtctacaatagatctcttgagcttattcctcctgtctcactg-aattttgtttcctttgactaacatctctcaaacctccgctgccctgccctcct------ccccacccctagccccggcactcgcc-atctactct--gcttctgtgagcccagtgttttcagattccatgtgtaagtgaggccccgcgctgtttgtctttctgtgcttggcttgtgtcatctaacgtcatgtcccccaggctc----------atcc---acatcacaaacaacgggatttcccccatgaaagctgagtggtattccactgtgtgt-cgtaccacgttcctttatccattcatccctcagcggacacttggTGAAATTCACTCTTCTCATCAGTAAAGTCAGATCACATTAGGT------------TC-CCCTTTTAATC--CT--AAGTCTCTGGCTGTGCAGCTCTCTAA i cerAty1.NW_012000820v1 I 1 C 0 s chlSab2.chr14 3434474 427 - 107702431 gtcaccgtgtctacaatagatctcttgagcttattcctcctgtctcactg-aattttgtttcctttgactaacatctctcacacctctgctgccctgccctcct------ccccacccccagccccggcacccgcc-atctcctct--gcgtctgtgagcccagtgttttcagattgcacgtgtaagtgaggtcccgcgctgtttgtctttctgtgcttggcttgtttcatctaacgtcatgtcccccaggctc----------atcc---acatc----acaacaggatttcccccatgaaagctgagtggtg-tccattgtgtgt-cgtgccacgttcctttatccattcatccctcagcggacacttggtgaaattcattcttCTCATCAGTAAAGTCAGATCACATTAGGT------------TC-CCCTTTTAATC--CC--AAGTCTCTGGCTGTGCAGCTCTCTAA i chlSab2.chr14 I 1 C 0 s manLeu1.NW_012104432v1 969113 432 + 1565135 gtcaccatgtctacaatagatctcttgagcttattcctcctgtctcactg-aattttgtttcctttgactaacatctctcaaacctccgctgccctgccctcct------ccccacccccagccccggcacccgcc-atctcctct--gcttctgtgagcccagtgttttcagattccatgtgtaagtgaggccccgcgctgtttgtctttctgtgcttggcttgtgtcatctaatgtcatgtcccccaggctc----------atcc---acatcacaaacaacggcatttcccccatgaaagctgagtggtattccactgtgtgt-cgtaccacgttcctttatccattcatccctcagcggacacttggTGAAATTCACTCTTCTCATCAGTAAAGTCAGATCACATTAGGT------------TC-CCCTTTTAATC--CT--AAGTCTCTGGCTGTGCAGCTCTCTAA i manLeu1.NW_012104432v1 I 1 C 0 s colAng1.NW_012118821v1 3340270 431 - 13651311 gtcaccatgtctacaatagatctctcgagcttattcctcctgtctcactg-gattttgtttcctttgactaacatctctcaaacctccgctgccctgccctcct------ccccaccccc-gccccggcacccgcc-atctactct--gcctctgtgagtccagtgtgctcagattccgtgtgtaagtgaggtcacacgccgtttgtctttctgtgcttggcttgttacatctaacatcatgtcccccaggttc----------atcc---acatcacgaacagcgggattccctccatgaaagctgagtggtattccactctgtgt-cgtgccacgctcctttatccatccatccctcagcggacacttagTGAAATTCACTCTTCTCATCAGTAACGTCAGATCACATTAGGT------------TC-CCCTTTTAATT--CC--AAGTCTCTGGCCGTGCAGCTCTCTCA i colAng1.NW_012118821v1 I 1 C 0 s calJac3.chr14 3432922 453 - 108792865 gtcaccaggtctacagtggatctcttgagcttattcctcctgtctcactg-aattttgtttcctttaactaacatctctcaaacctcccctgcc-tgccccgct------ccccacct-cggccacggcacccgcc-atctactct--gcctctgtgagttcagcgttttcagattccgcatgtaagtgggatcatgcagtgtttgtctttctgtgcctggcttgtttcatctaatgtcacgtcccccaagctcacccacatcaatcc---acatcacaaacgacaggacttcctccgtgaaagctgagtgtgattccactgtatgg-catgcctcattcctttatccctccgtcc-tcagtagacacttggtgaaattcattcttCTCCTCAGTAAAGTCAGATCAAATTAGGTCATTTCTAAGAAAC-CCCTTTGAATC--CTAAAAGTCTCTGGCTCTGCAGCTCTCTAA i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3087319 439 - 7082604 gtcaccatgtctgcagtggatctcttgagcttattcctcctgcctcactg-aattttgtttcctttaactaacatctctcaaacctcccctgcc-tgccccact------ccccaccc-cagccccggcaccggcc-atctactct--gcctctgtgagttcagcgttttcagattccacgtgtaagtgggatcacgcggtgtttgtctgtctgcgcctggcttgtttcatctaacgtcacgtcccccaggctc----------atct---ccatcaccaacgatggggctgcctccgtgaaagccgagtgccattccgtcgtgtgg-catgcctca----tctacccgtccgtcc-tcagcagacacttggtgaaattcattcttctcatcagtaaagtcagatcaaattaggtcatttctaaggaac-cccttttaatc--ctaaaagtctctggctctGCAGCTCTCTAA i saiBol1.JH378218 I 1 C 0 s cebCap1.NW_016107454v1 573075 445 + 5243153 gtcaccatgtctacagtggatctcttgagcttattcctcctgtctcactg-aattttgtttcctttaactaacatctctcaaacctcccttgcc-tgcccccct------ccccaccc-cagccccggcccctgcc-atctactct--gcctctgtgagttcaccgttttcagattccacgtgtaagtgggatcacgcggtgtttgtctttctgtgcctggcttgtctcctctaacgtcacgtcccccaagcct----------gtct---acgtcaccaacgacgggacttcctccgtgaaagctgagtgcgattccattgtgtgg-cgtgcctcattcctttatccatccgtcc-tcagcagacacttggTGCAATTCATTCTTCTCATCAGTAAAGTCAGATCAAATTAGGTCATTTCTGAGGAAC-CCCTTTTAATCTACTAAAAATCTCTGGCTCTGCAGCTCTGTAA i cebCap1.NW_016107454v1 I 66 C 0 s aotNan1.NW_018507213v1 1906299 440 - 1938448 gtcaccatgtctacagtggatctcttgagcttattcctcctgtctcactg-aattttgttccctataactaacatctctctaacctcccctgcc-tgccc--ct------ccccaccg-cagccccggcacccacc-atctactct--gcctctgtgagttcggcgttttcagattccacgtgtaagtgggatcgcgcggtgtttgtctttctgtgcctggcttgtttcgtctaacgtcacgtcccccaggctc----------atcc---acgtcacaaacgacgggacttcctccgtgaaagtggagtgcgattcc-ttgtgcgg-cgtgcctcattcctttatccatccgtcc-tcagcagacacttggCGAAATTCGTtcttctcatcagtaaagtcagatcaaattaggtcatttctaaggaac-cccttttaatc--ctaaaagtctctggctctGCAGCTCTCTAG i aotNan1.NW_018507213v1 I 1 C 0 s otoGar3.GL873658 2515388 434 + 5252280 GTGGCCAgttgtgcagcacgtctcctggactcattcctccttttcagctgaaatcccgtgtcctttgacccgcatctcccagatacc----------cccactc------tccca-----ggccccggtaaccacagatctgcgctcagctcctgtgcattgaacttttttaaattccaca--caagagagaacatgcagcatctgcctccctgctcccggcttgtttcacaggacgtgaggtcctccagcttc----------tttccgggtatcacagacgacagggttcccttctgtaggattgagtactgttccactgtgcgtgtgtgccacgttc-tctgtcctttcatccatcgatgaatactcaCTGAGCTTCATGTTTCTCACGAGGGAGTTGACATTAAATCAGGTCATATTTGAG--AT-GCCTCGTAATT--CTGAAAGTCTCTGGCCTTGGAGCTCCCTGA i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I e dasNov3.JH580157 542333 45 + 2232271 I a score=3678988.000000 s hg38.chr2_KI270769v1_alt 33910 396 + 120616 TGCAAATTCCCACCATTTTCCTGAATGTACCCCTG--------------A------GAGCACACTGTGCTCTCTCGTATGTTGTGTTTTGTCCACTCTGTACCTTTGTC--CTTATGTTCCCTGAACCAGCAGACCCTTCCTTAGCCTGT---GGCCCCTTGAAATTCTG--CAGCCCTGAGAGCTGCC------------------------------------CTCAAACA----C------------A---ACCCATCCCTGCGCTTCCT--------CTCCTTCC-------------------------------TGCTCCC-------------GT----TC----CCGCCGTCATTCCCCCGCCCTCCACTAGGTGGCGCAT--TCCTTTG---------G---------TGCCTTTTCATTTTCATGAcacctagcacagtgctttgcacacaga-cctgctcagtaagcactgtttactt-attg-agtaaaC--AATTATGTAAAATCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA-----------------------------------------------------------------------------------------tttcttcttagagaca s panTro5.chr2A 3486195 396 + 111504155 TGCAAATTCCCACCATTTTCCTGAATGTACCCCTG--------------A------GAGCACACTGTGCTCTCTCGTATGTTGTGTTTTGTCCACTCTGTACCTTTGTC--CTTACGTTCCCTGAACCAGCAGACCCTTCCTTAGCCTGT---GGCCCCTTGAAATTCCG--CAGCCCTGAGAGCTGCC------------------------------------CTCAAACA----C------------A---ACCCATCCCTGCGCTTCCT--------CTCCTTCC-------------------------------TGCTCCC-------------GT----TC----CTGCCGTCATTCCCCCGCCCTCCACTAGGTGGCGCAT--TCCTTTG---------G---------TGCcttttcattttcatgacacctagcacagtgctttgcacacaga-cctgctcagtaagcactgtttactt-attg-agtaaac--aaTTATGTAAAATCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA-----------------------------------------------------------------------------------------tttcttctcagagaca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3356401 396 + 114371477 TGCAAATTCCCACCATTTTCCTGAATGTACCCCTG--------------A------GAGCACACTGTGCTCTCTCGTATGTTGTGTTTTGTCCACTCTGTACCTTTGTC--CTTACGTTCCCTGAACCAGCAGACCCTTCCTTAGCCTGT---GGCCCCTTGAAATTCCG--CAGCCCTGAGAGCTGCC------------------------------------CTCAAACA----C------------A---ACCCATCCCTGCGCTTCCT--------CTCCTTCC-------------------------------TGCTCCC-------------GT----TC----CTGCCGTCATTCCCCCGCCCTCCACTAGGTGGCGCAT--TCCTTTG---------G---------TGCcttttcattttcatgacacctagcacagtgctttgcacacaga-cctgctcagtaagcactgtttactt-attg-agtaaac--aaTTATGTAAAATCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA-----------------------------------------------------------------------------------------tttcttcttagagaca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 231964 407 + 637652 TGCAAATTCCCACCATTTTCCTGAATGTACCCCAGATGCTGGC------A------GAGCACAGTGTGCTCTCTCGTATGTTGTGTTTTGTCCACTCTGTACCTTTGTC--CTTATGTTCCCTGAACCAGCAGACCCTTCCTTAGCCTGT---GG-CCCTTGAAATTCCG--CAGCCCTGAGAGCTGCC------------------------------------CTCAAACACAACC------------A---ACCCATCCCTGCGCTTCCT--------CTCCTTCC-------------------------------TGCTCCT-------------GT----TC----CCGCCGTCATTCCCCCGCCCTCCACTAGGTGGTGCAT--TCCTTTG---------G---------TGCcttttcatcttcatgacacctagcacagtgctttgcacacaga-cctgctcagtaagcactgtttactt-attg-aGTAAAC--AATTATGTAAAATCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA-----------------------------------------------------------------------------------------tttctttttagagaca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3027462 404 + 81552678 TGCAAATTCCCACCATTTTCCTGAATGTACCCCAGATGCTGCC------A------GAGCACACTGTGCTCTCTTGTATGTTGTGTTTTGTCCACTCTGTATCTTTGTC--CTTACGTTCCTTGAACCAGCAGACCCTTCCTTAGCCTGT---GGCGCCTTGAAATTCCG--CAGCCCTGAGAGCTGCC------------------------------------CTCAAACA----C------------A---ACCCATCCCTGCGCTTCCT--------CTCCTTCC-------------------------------TGCTCCC-------------GT----TC----CCGCCGTCATTCCCCCGCCCTCCACTAGGTGGCGCAT--TCCTTTG---------G---------tgtcttttcatcttcatgacacctagcacagtgctttgcacacaca-cctgcccagtaagcactgttaactt-attg-agtaaac--aaTTATATAAAATCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA-----------------------------------------------------------------------------------------tttctttttagagaca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3289821 402 + 108979918 TGCAAATCCCCACCATTTTCCTGAAGGTACCCCAGATGCTGCC------A------GAGCACGCTGTGCTCTC--GTACGTCGTGTTTTGTCCACTCTGTGCCTTTGTC--CTTACGTTCCCTGAACGAGCAGACCCTTCCTTAGCCTGT---GGCCCCTTGAAACTCCG--CAGCCCTGAGAGCTGCC------------------------------------CTCAAACA----C------------A---GCCCATCCCCGCGCTTCCG--------CTCCTTCC-------------------------------TGCTCCC-------------GT----TC----CCGCCGTCATTCCCCCGCCCTCCACTAGGCGGCGCAT--TCCTTTG---------G---------TGCCTTTCCgtcttcatgacacctagcacagtgctttgcacacaca-cctgctcagtaagcagtgtttactt-actg-agtaaaC--AGTTATGTAAAACCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA-----------------------------------------------------------------------------------------tttttttttagagaca i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5002588 402 - 111193037 TGCAAATCCCCACCATTTTCCTGAAGGTACCCCAGATGCTGCC------A------GAGCACGCTGTGCTCTC--GTACGTCGTGTTTTGTCCACTCTGTGCCTTTGTC--CTTACGTTCCCTGAACGAGCAGACCCTTCCTTAGCCTGT---GGCCCCTTGAAACTCCG--CAGCCCTGAGAGCTGCC------------------------------------CTCAAACA----C------------A---ACCCATCCCCGTGCTTCCG--------CTCCTTCC-------------------------------TGCTCCC-------------GT----TC----CCGCCGTCATTCCCCCGCCCTCCACTAGGCGGCGCAT--TCCTTTG---------G---------TGCCTTTCCgtcttcatgacacctagcacagtgctttgcacacaca-cctgctcagtaagcagtgtttactt-actg-agtaaaC--AGTTATGTAAAACCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA-----------------------------------------------------------------------------------------tttttttttagagaca i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3397362 404 + 3644372 TGCAAATTCCCACCATTTTCCTGAAGGTACCCCAGATGCTGCC------A------GAGCACGCTGTGCTCTC--GTACGTTGTGTTTTGTCCACTCTGTGCCTTTGTC--CTTACGTTCCCTGAACGAGCAGACCCTTCCTTAGCCTGT---GGCCCCTTGAAACTCCG--CAGCCCTGAGAGCTGCC------------------------------------CTCAAACA----C------------A---ACCCATCCCCGCGCTTCCG--------CTCCTTCC-------------------------------TGCTCCC-------------GT----TC----CCGCCGTCATTCCCCCGCCCTCCACTAGGCGGCGCAT--TCCTTTG---------G---------TGCCTTTCCgtcttcatgacacctagcacagtgctttgcacacaca-cctgctcagtaagcagtgtttactt-actg-agtaaaC--AGTTATGTAAAACCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA---------------------------------------------------------------------------------------tttttttttttagagaca i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3352007 405 - 10304083 TGCAAATTCCCACCATTTTCCTGAAGGTACCCCAGATGCTGCCA----GA------GAGCACGCTGTGCTCTC--GTACGTCGTGTTTTGTCCACTCTGTGCCTTTGTC--CTTACGTTCCCTGAACGAGCAGACCCTTCCTTAGCCTGT---GGCCCCTTGAAACTCCG--CAGCCCTGAGAGCTGCC------------------------------------CCCAAACA----C------------A---ACCCATCCCCGCGCTTCCG--------CTCCTTCC-------------------------------TGCTCCC-------------GT----TC----CCGCCGTCATTCCCCCGCCCTCCACTAGGCGGCGCAT--TCCTTTG---------G---------TGCctttccatctccatgacacctagcacagtgctttgcacacaca-cctgctcagtaagcagtgtttactt-actg-agtaaaC--AGTTATGTAAAATCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA----------------------------------------------------------------------------------------ttttttttttaaagaca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3434901 387 - 107702431 TGCAAATTCCCACCGTTTTCCTGAAGGTACCCCAGATGCTGCC------A------GAGCACGCTGTGCTCTC--CTACGTCATGTTTTGTCCACTCTGTGCCTTTGTC--CTTACGTTCCCTGAACGAGCAGACCCTTCCTTAGCCTGT---GGCCCCTTGAAACTCCG--CAGCCCTGAGAGCTGCC------------------------------------CTCAA--A----C------------A---ACCCATTCCAGCGCTT------------------C-------------------------------TGCTCCT-------------GT----TC----CCGCCGTCATTCCCCCGCCCTCCACTAGGCGGCGCAT--TCCTTTG---------G---------TGCCTTTCCATC-TCATGAcacctagcacagtgctttg--cacaca-cctgctgagtaagcaatgtttactt-actg-agtagaC--AGTTATGTAAAACCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA-----------------------------------------------------------------------------------------tttttttttagagaca i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 969545 403 + 1565135 TGCAAATTCCCACCATTTTCCTGAAGGTACCCCAGATGCTGCC------A------GAGCACGCTGTGCTCTC--GTACGTCGTGTTTTGTCCACTCTGTGCCTTTGTC--CTTACGTTCCCTGAAGGAGCAGACCCTACCTTAGCCTGT---GGCCCCTTGAAACTCCG--CAGCCCTGAGAGCTGCC------------------------------------CTCAAACA----C------------A---ACCCATCCCCGCGCTTCCG--------CTCCTTCC-------------------------------TGCTCCC-------------GT----TC----CCGCCGTCATTCCCCCGCCCTCCACTAGGCGGCGCAT--TCCTTTG---------G---------TGCctttccatcttcatgacacctagcacagtgctttgcacacaca-cctgctcagtaagcagtgtttactt-actg-agtaaaC--ACTTATGTAAAACCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA----------------------------------------------------------------------------------------ttttttttttaaagaca i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3340701 402 - 13651311 TGCAAATTCCCACCGTTTTCCTGAATGTACCCCAGATGCTGCC------A------GAGCACTCTGTGCTCTC--GTACGTCGTGTTTTGTCCACTCTGTGCCTTTGTC--CTTACGTTCCCTGAACGAGCAGACCCTTCCTTAGCCTGT---GGCCCCTTGAAATTCCG--CAGCCCTGAGAGCTGCC------------------------------------CTCAAACA----C------------A---GCCCATCCCTGCGCTTCCG--------CTCCTTCC-------------------------------TGCTCCC-------------GT----TC----CCGCCGTCATTCCCCCGCCCTCCACTAGGCGGCGCAT--TCCTGTG---------G---------TGCCTTTccgtcttcgtgacacctagcacagtgctttgcacacaca-cctgctcggtgagcagtgtttactt-attg-agtaaaC--AGTTATGTAAA---GTTCACA---TTGTTATT---AAGCTCA--ATAGTAA--------------------------------------------------------------------------------------ttttttttttttagagaca i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3433375 393 - 108792865 TGCAAATTCCCCCCATTT-----------TCCCAGATGCTGTC------A------GAGCACACTGTGCCCTC--AGAAGTTGCATTCCGTCCACTCTGTGCCTTTGTC--CTGAGGTTCCCTGAACCAGCAGAGCCTTCCGTAGCCTGT---GGCCATTTGAAATTCCA--CAGCCCTGAGAGCTGCC------------------------------------TTCAAAGG----C----------------AGCCAGCCCTG-GCTTCC---------CTCCTTCC-------------------------------TGCTCCC-------------AT----Tgcccccccccg------ccccgcccccAGCTAGGTGGCACAT--TCCTTTG---------G---------TGCCTTTTCATCTTCATGACATGTAGCATAGTGCTTTGCATGCACA-CCTGCTCAATAAGCACTGTTTACTT-ATTG-AGTAAAC--AATTACATAAAATCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA----------------------------------------------------------------------------------ttttttttttttttttggagaca i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3087758 462 - 7082604 TGCA-------------------------CCCCAGATGCTGTC------A------GAGCACACTGCACCCTC--AGACGTTGCCTTCTGTCCACTCTGTGCCTTTGTC--CTGACGTTCCCTGAACCAGCAGACCCTTCCGTAGCCTGT---GGCCATTTGAAATTCCA--CAGCCCTGAGAGCTGCC------------------------------------TTCAAAGG----C------------AGTGAGCCAGCCCTTCGCTTCC---------CTCCTTCC-------------------------------TGCTCCC-------------AT----TG----CCCCCG------CCCCGCCCCCAGCTAGGTGGCACAT--TCCTTTG---------G---------TGCCTTTTCATCTTCATGACATGTAGCACAGTGCTTTGCACGCACA-CCTGCTCAATAAGCACTGTTTACTT-ATTG-AGTAAAC--AATTACATAAAATCATTCACA---TTGTTATT---AAGCTCA--ATAGTAATTTTttttttttttttttttttttaaaaatgtcaattcattgtgttttattctgcatggtttctgatgagaaaCAATGGAttttttttttttttttttagagaca i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 573520 401 + 5243153 TGCAAATTCCCCCCATTT-CCTGAATGCACCCCAGATGCTGTC------A------GAGCACACTGTGCCCTC--AGACGTTGCCTTCTGTCTACTCTGTGCCTTTGTC--CTGACCTTCCCTGAACCACCAGACCCTTCCGTAGCCTGT---GGCCATTTGAAATTCCA--CAGCCCTGAGAGCTGCC------------------------------------TTCAAAGG----CAGC--------CAGCCAGCCAGCCCTGCGCTTCC---------CTCCTTCC-------------------------------TGCTCCC-------------AT----TC---TCCCCTG------CCCCGCCCCCAGCTAGGTGGCACAT--TCCTTTG---------G---------TGCCTTTTCATCTTCGTGACA--tagcacagtgctttgcacgcaca-cctgctcagtaagcactgtttactt-attg-aGTAAAC--AATTATGTAAAATCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA----------------------------------------------------------------------------------------ttttttttttagagaca i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1906739 399 - 1938448 TGCAAATTCCCCCCATTTTCCTGAACG--CACTCGATGCTGTC------A------GAGCACACTGTGCCCTC--AGACGTTGCATTCTGTCCATTCTGTGCCTTTGTC--CTGACGTTCCCTGAA-CAGCAGATCCTTCCGTAGCCTGT---GGCCATTTGAAATTCCA--CAGCCCTGAAAGCTGCC------------------------------------TTCGAAGG----C------------AGCCAGCCAGCCCTGCACTTCC---------CTCCTTCC-------------------------------TGCTCCC-------------AT----TC---CCCCCCG------CCCCGCCCCCAGCTAAGTGGCACAT--TCCTTTG---------G---------TGCcttttcatcttcatgacacgtagcacagtgctttgcacgcaca-cctgctcagtaagcactgtttactt-attg-aGTAAAC--AATTACGTAAAATCATTCACA---TTGTTATT---AAGCTCA--ATAGTAA--------------------------------------------------------------------------------------Atttttttttttagagaca i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2515822 460 + 5252280 TGTGAATTCCCGCCATCTTCCTCAATGCACTCTGCTTGGTGGCCACTTGG------CAGCTCACGGTGCACAG--GCCCTTCCCATGCTGGCCAC-----------------------TCCAGAAACCTGCAGGTCCTTCCTTAACCTGT---GGCCTCCTGAGGTTCTG--TGGCCTCTTGAGGTTCTGTGGCCTCCTGAGGTTCTGTGGCCTCCGGGACAGAGCTCAAGCA----C------------A---GCCCCACCCTGCTTTCCTG--------CCCCGCCC-------------------------------TCCTCCCCTGCCGATTCCCAAT----TC----CCACCATCATTCCCACTCCCC-----AGATGATACGTGCTCCTTTGGAAAGGGCTG---------TGCTTGCTGGTCTTCAAAATATATAGTGTAGTGCTTGGCACACACAGGCTGCCCAGTATATATTGTTTCCTTAACGG-AGTAAAC--AGTAATGTAAAATTGCTTACATTGTTGTTACT---AAGCCCAAGATGGTTT------------------------------------------------------------------------------TTTCttttttcttttttgttggatgta i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 542378 459 + 2232271 TGTTAatttccatcattttcctaaatgtacttgtattctggcc------acttgaccagcctgctatcctcac--atacatcacatactttccactctgtgcctttgtttattcctatacctggaacggcctctctctgtctcttccagtccctgcctataaaaattctatttattcttcagtgtcttt------------------------------------ctcaaaca----ctgctttatccaca---atctgttcctcatcttccttgcttggccttcctccaaactattataatctctccactttactgttgtgttctt-------------atctcctc----cttccatcacctctccaccctctactagattatatac--tcctttg---------agaaagggattatatctttatctccataatat---acacatcattt-----------cctgctgaataag-------tattt-gttgaaataaatTGTATCAAGTAAAATAATTTACA---TCATCATTATGAAGCCCA--AAAATAT-----------------------------------------------------------------------------------------------GTTATAAACA i dasNov3.JH580157 I 45 C 0 e micMur3.chr8 2626616 2171 - 159902609 I e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e proCoq1.NW_012151163v1 939467 2279 + 1238772 I a score=1223537.000000 s hg38.chr2_KI270769v1_alt 34306 95 + 120616 gggtctcgctatgttgcccaggctggactcagactcctgggctcaagcaatcttcccacctcagcctcctgagtagctggaactgca---ggcatgag s panTro5.chr2A 3486591 95 + 111504155 gggtctcgctatgttgcccaggctggactcagactcctgggctcaagcaatcttcccacctcagcctcctgagtagctggaactgca---ggcatgag i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3356797 95 + 114371477 gggtctcgctatgttgcccaggctggactcagactcctgggctcaagcaatcttcccacctcagcctcctgagtagctggaactgca---ggcatgag i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 232371 95 + 637652 gggtctcgctaagttgcccaggctggactcagactcctgggctcaagcgatcttcccacctcagcctcctgagtagctggaactgca---ggcatgag i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3027866 95 + 81552678 gagtctcgctgtgttgcccaggctggactcagtctcctgggctcaagcgatcttcccacctcagccttctgagtagctggaactgca---ggcatgag i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3290223 95 + 108979918 gggtctcgctatgttgtccaggctgtgctcaaactgctgggctcaagtgatcctcccacatcagcctcccgagtagctggaactgca---ggcatgAG i rheMac8.chr13 C 0 I 87 s macFas5.chr13 5002990 95 - 111193037 gggtctcgctatgttgtccaggctgtgctcaaactgctgggctcaagtgatcctcccacctcagcctcccaagtagctggaactgca---ggcATGAG i macFas5.chr13 C 0 I 2 s macNem1.NW_012011978v1 3397766 95 + 3644372 gggtctcgctatgttgtccaggctgtgctcaaactgctgggctcaagtgatcctcccacctcagcctcccgagtagctggaactgca---ggcatgAG i macNem1.NW_012011978v1 C 0 I 87 s cerAty1.NW_012000820v1 3352412 95 - 10304083 gggtctcgctatgttgtccaggctgtgctcaaactgctgggctcaagcgatcctcccacctcagcctcccgagtagctggaactgca---ggcatgAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3435288 95 - 107702431 gggtctcgctatgttgtccaggctgtgctcaaactgctgggctcaagcgatcctcccacctcagcctcccgagtagctggaactgca---ggcatgAG i chlSab2.chr14 C 0 I 87 s manLeu1.NW_012104432v1 969948 95 + 1565135 gggtctcgctatgttgtccaggctgtgctcaaactgctgggctcaagcgatcctcccacctcagcctcccgagtagctgaaactgca---ggcATGAG i manLeu1.NW_012104432v1 C 0 I 87 s colAng1.NW_012118821v1 3341103 95 - 13651311 gggtctcgctgtgttgtccaggctgtactcaaactcctgggctcaagcaatcctcccacctcagcctcccgagttgctggaactgca---ggcatgag i colAng1.NW_012118821v1 C 0 I 87 s calJac3.chr14 3433768 94 - 108792865 gggtctcactatgttgcccaggctggacttgaactcc-aggctcaagcaatcctcccacctcagcctcttgagtagctggaactgca---ggcatgtg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3088220 94 - 7082604 ggatctcactatgttgcccaggctggacttgaactcc-aggctcaagtgatcctcccacctcagcctcttgagtagctggaactgca---ggcatgag i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 573921 92 + 5243153 gggtctcactatg-tgcccaggctggacttgaactcc-aggctcaagtgatcctcccacctcagcctcctgagtagctggaactgca----gcatgag i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1907138 94 - 1938448 gggtctcactatgttgcccaggctggacttgaactcc-aggttcaagcgatcctcccacctcagcctcttgagtagctggaactgca---ggcatgag i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2628787 95 - 159902609 gggtcttgctgtgttgcccaagctggactcgaactcctggcttcaagtgatcctcccacctcaacctctcaagtagctgggactaca---gacatgta i micMur3.chr8 I 2171 C 0 s proCoq1.NW_012151163v1 941746 95 + 1238772 gggtcttgctgtgtcgcccaggctggactggtactcctaggttcaagtgatcctcccacctcaacctctcaagtagctgggactaca---ggcgtgta i proCoq1.NW_012151163v1 I 2279 C 0 s otoGar3.GL873658 2516282 98 + 5252280 gggtcttgctctgttgcccacactgtactggaactcctgggttcaagtgatcctcctgcctcagcctctcaagtagctaggactaaaaagggcatgtg i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e dasNov3.JH580157 542837 0 + 2232271 C a score=-6703.000000 s hg38.chr2_KI270769v1_alt 34401 4 + 120616 --gcat s panTro5.chr2A 3486686 4 + 111504155 --gcat i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3356892 4 + 114371477 --gcat i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 232466 4 + 637652 --gcat i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3027961 4 + 81552678 --gcat i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5003087 2 - 111193037 ----AT i macFas5.chr13 I 2 I 49 s cerAty1.NW_012000820v1 3352507 4 - 10304083 --TGAT i cerAty1.NW_012000820v1 C 0 I 83 s micMur3.chr8 2628882 4 - 159902609 ctgc-- i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 941841 4 + 1238772 ctgc-- i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2516380 4 + 5252280 ctac-- i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e saiBol1.JH378218 3088314 0 - 7082604 C e dasNov3.JH580157 542837 0 + 2232271 C e cebCap1.NW_016107454v1 574013 0 + 5243153 C e aotNan1.NW_018507213v1 1907232 0 - 1938448 C e calJac3.chr14 3433862 0 - 108792865 C e colAng1.NW_012118821v1 3341198 87 - 13651311 I e manLeu1.NW_012104432v1 970043 87 + 1565135 I e chlSab2.chr14 3435383 87 - 107702431 I e macNem1.NW_012011978v1 3397861 87 + 3644372 I e rheMac8.chr13 3290318 87 + 108979918 I a score=23136.000000 s hg38.chr2_KI270769v1_alt 34405 11 + 120616 catg--cccagcT s panTro5.chr2A 3486690 11 + 111504155 catg--cccagcT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3356896 11 + 114371477 catg--cccagcT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 232470 11 + 637652 catg--cccagcT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3027965 11 + 81552678 catg--cccagcT i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5003138 13 - 111193037 CATGACCTCACCT i macFas5.chr13 I 49 C 0 s calJac3.chr14 3433862 6 - 108792865 -------ccaGCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3088314 6 - 7082604 -------ccaGCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 574013 6 + 5243153 -------ccagcc i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1907232 6 - 1938448 -------ccagcc i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2628886 11 - 159902609 catg--cccagcT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 941845 11 + 1238772 catg--cccagcT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2516384 11 + 5252280 gggg--cctgacT i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91406780 1046 - 120129022 I e canFam3.chr17 2021553 377 + 64289059 I e dasNov3.JH580157 542837 0 + 2232271 C e colAng1.NW_012118821v1 3341198 87 - 13651311 I e manLeu1.NW_012104432v1 970043 87 + 1565135 I e chlSab2.chr14 3435383 87 - 107702431 I e cerAty1.NW_012000820v1 3352511 83 - 10304083 I e macNem1.NW_012011978v1 3397861 87 + 3644372 I e rheMac8.chr13 3290318 87 + 108979918 I a score=45634.000000 s hg38.chr2_KI270769v1_alt 34416 10 + 120616 TCAAGAGTA-A s panTro5.chr2A 3486701 10 + 111504155 TCAAGAGTA-A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3356907 10 + 114371477 TCAAGAGTA-A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 232481 10 + 637652 TCAAGAGTA-A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3027976 10 + 81552678 TCAAGAGTA-A i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5003151 10 - 111193037 CGCAGAGTG-A i macFas5.chr13 C 0 I 11 s calJac3.chr14 3433868 10 - 108792865 TCAAGAATA-A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3088320 10 - 7082604 TCAAGAATA-A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 574019 10 + 5243153 tcaagaata-a i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1907238 10 - 1938448 tcaagaata-a i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2628897 11 - 159902609 GCCAGAGTATT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 941856 10 + 1238772 GCCAGAGTA-T i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2516395 10 + 5252280 TCACGAGTA-T i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2021930 10 + 64289059 TCAAGAGTA-T i canFam3.chr17 I 377 C 0 e mm10.chr12 91406780 1046 - 120129022 I e dasNov3.JH580157 542837 0 + 2232271 C e colAng1.NW_012118821v1 3341198 87 - 13651311 I e manLeu1.NW_012104432v1 970043 87 + 1565135 I e chlSab2.chr14 3435383 87 - 107702431 I e cerAty1.NW_012000820v1 3352511 83 - 10304083 I e macNem1.NW_012011978v1 3397861 87 + 3644372 I e rheMac8.chr13 3290318 87 + 108979918 I a score=133383.000000 s hg38.chr2_KI270769v1_alt 34426 9 + 120616 TTTTTTAAA s panTro5.chr2A 3486711 9 + 111504155 TTTTTTAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3356917 9 + 114371477 TTTTTTAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 232491 9 + 637652 TTTTTTAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3027986 9 + 81552678 TTTTTTAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3290405 9 + 108979918 TTTTTTAAA i rheMac8.chr13 I 87 C 0 s macFas5.chr13 5003172 9 - 111193037 TTTTTTAAA i macFas5.chr13 I 11 C 0 s macNem1.NW_012011978v1 3397948 9 + 3644372 TTTTTTAAA i macNem1.NW_012011978v1 I 87 C 0 s cerAty1.NW_012000820v1 3352594 9 - 10304083 TTTTTTAAA i cerAty1.NW_012000820v1 I 83 C 0 s chlSab2.chr14 3435470 9 - 107702431 TTTTTTAAA i chlSab2.chr14 I 87 C 0 s manLeu1.NW_012104432v1 970130 9 + 1565135 TTTTTTAAA i manLeu1.NW_012104432v1 I 87 C 0 s colAng1.NW_012118821v1 3341285 9 - 13651311 TTTTTTAAA i colAng1.NW_012118821v1 I 87 C 0 s calJac3.chr14 3433878 9 - 108792865 TTTTTTAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3088330 9 - 7082604 TTTTTTAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 574029 9 + 5243153 ttttttAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1907248 9 - 1938448 ttttttAAA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2628908 9 - 159902609 TTTTATAAA i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 941866 9 + 1238772 TTTTACAAA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2516405 9 + 5252280 TTGTATAAA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2021940 9 + 64289059 TTTTATAGA i canFam3.chr17 C 0 C 0 e mm10.chr12 91406780 1046 - 120129022 I e dasNov3.JH580157 542837 0 + 2232271 C a score=1905962.000000 s hg38.chr2_KI270769v1_alt 34435 147 + 120616 TACGATTGTGTAAATATGCAAAGAT----AGAAAGTTAGGTTAGCCCTTATTTTAATATATGAGAAATTAACCTCTAA--CACCAAC-TCATAAGGAATAGCAAATTCTGAACTGGATATATGTAGATAACCTATTGTTT-CCATTGTA-TTT--TGT s panTro5.chr2A 3486720 147 + 111504155 TACGATTGTGTAAATATGCAAAGAT----AGAAAGTTAGGTTAGCCCTTATTTTAATATATGAGAAATTAACCTCTAA--CACCAAC-TCATAAGGAATAGCAAATTCTGAACTGGATATATGTAGATAACCTATTGTTT-CCACTGTA-TTT--TGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3356926 147 + 114371477 TACGATTGTGTAAATATGCAAAGAT----AGAAAGTTAGGTTAGCCCTTATTTTAATATATGAGAAATTAACCTCTAA--CACCAAC-TCATAAGGAATAGCAAATTCTGAACTGGATATATGTAGATAACCTATTGTTT-CCATTGTA-TTT--TGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 232500 147 + 637652 TACGATTGTGTAAATATGCAAAGAT----AGAAAGTTAGGTTAGCCCTTATTTTAATATATGAGAAATTAACCTCTAA--CACCAAC-TCAGAAGGAGTAGCAAATTCTGAACTGGATATATGTAGATAACCTATTGTTT-CCACTGTA-TTT--TGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3027995 148 + 81552678 CACGATTGTGTAAATATGCAAAGAT----AGAAAGTTAGGTTAGCCCTTATTTTAATATATGAGAAATTAACCTCTAA--CACCAACTTCATGAGGAATAGCAATTTCTGAACTGGATATATGTAGATAACCTATTGTTT-CCATTGTA-TTT--TGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3290414 147 + 108979918 CACGATTTTGTAAATATGCAAAGAT----AGGAAGTTAGGTTAGCCCTTATTTTAATATATGAGAAATTAATCTCTT---AACCAACTTCATAAGGAATAGCAATTTCTGAACTGGATATATATAGATAACCTATTGTTT-CCATTGTA-TTT--TGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5003181 150 - 111193037 CATGATTTTGTAAATACGCAAAGAT----AGGAAGTTAGGTTAGCCCTTATTTTAATATATGAGAAATTAATCTCTTAACAACCAACTTCATAAGGAATAGCAATTTCTGAACTGGATATATATAGATAACCTATTGTTT-CCATTGTA-TTT--TGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3397957 150 + 3644372 CACGATTTTGTAAATATGCAAAGAT----AGGAAGTTAGGTTAGCCCTTATTTTAATATATGAGAAATTAATCTCTTAACAACCAACTTCATAAGGAATAGCAATTTCTGAACTGGATATATATAGATAACCTATTGTTT-CCATTGTA-TTT--TGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3352603 150 - 10304083 CACGATTTTGTAAATATGCAAAGAT----AGGAAGTTAGGTTAGCCCTTATTTTAATATATGAGAAATTAATCTCTTAACAACCAACTTCATAAGGAATAGCAATTTCTGAACTGGATATATATAGATAACCTATTGTTT-CCATTGTA-TTT--TGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3435479 150 - 107702431 CACAATTTTGTAAATATGCAAAGAT----AGGAAGTTAGGTTAGCCCTTATTTTAATATATGAGAAATTAATCTCTTAACAACCAACTTCATAAGGAATAGCAATTTCTGAACTGGATATATATAGATAACCTATTGTTT-CCATTGTA-TTT--TGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 970139 150 + 1565135 CACGATTTTGTAAATATGCAAAGAT----AGGAAGTTAGGTTAGCCCTTATTTTAATATATGAGAAATTAATCTCTTAACAACCAACTTCATAAGGAATAGCAATTTCTGAACTGGATATATATAGATAACCTATTGTTT-CCATTGTA-TTT--TGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3341294 148 - 13651311 CACGACTGTGTAAATATGCAAAGAT----AGGAAGTTAGGTTAGCCCTTATTATAATATATGAGAAATTAATCTCTAA--CACCAACTTCATAAGGAATAGCAATTTCTGAACTGGATATATATAGATAACCTATTGTCT-CCATTGTA-TTT--TGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3433887 151 - 108792865 CACAATTGTGTAAATACGCAAAGAA----AGAAAGTTAGGTTAGCCTTTATTTTAATATTTGAGAAATTAACCTCTAA--CACCCGCTTCATAAGGAATAGGAATTTCTGAACTGGACATGTGTAGATAACCTCTTATTTCCCATCATG-TTTTGTGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3088339 150 - 7082604 CACAATTGTGTAAATACGCAAAGAT----AGAAAGTTAGGTTAGCCCTCATTTTAATATTTGAGAAATTAACCTCTAA--CACCAACTTCATAAGGAACAGGAATTTCTGAACTGGATATATGTAGATAATCTCTTATTT-CCATTGTG-TTTTGTGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 574038 150 + 5243153 CACAATTGTGTAAATATGCAAAGAT----AGAAAGTTAGGTTAGCCCTTATTTTAATATTTGAGAAATTAACCTCTAA--CACCAACATCATAAGGAATAGGAATTTATTAACTAGATATATGTAGATAACCTCttattt-ctgttgtg-ttttgtgt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1907257 150 - 1938448 CACAATTGTGTAAATACGCAAAGAT----AGAAAGTTAGGTTAGCCCTTATTTTAATATTTCTGAAATTAACCTTTAA--CACCAACTTCATAAGGAATGGGAATTTCTGAACTGAATATATGAAGATAACCTCTTGTTT-CCATCGTG-TTTTGTGT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2628917 149 - 159902609 CATGGTTATGCAAAGCTGCAAAGAT----AGAAAGTTAGGTTAGCCCCTGTGTTAATATGTTAGAGATCAACCTCTGA--TAAAAAT-TAATGGGGAATAGGAATTTCTGAACTTGATACATGTAGATAACCTATTGTT--CCATTCCATTTTTGTGT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 941875 146 + 1238772 CACGGTTATGCAAAGCTGCAAAGAT----GGACGGTTAGGTTAGCCCCTGTTTTA--ATGTTAGAGATCAACCTCTGA--TACCGAT-TAATAGGAAATAGGAATTTCTGAAACTGATACACGTAGATAACCTATTGTT--CCATTCTG-TTTTGTGT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2516414 147 + 5252280 CATAGTTATGCAAAGCTGCAAAGAT----AGAAAGTTAGGCTCACCCC-ATTCTAATGTGTTAGAGATTTATCTCTGA--TACAAAT-CAATAAGCATTAGGAATTTCTGAACTTGATACGTGCAGATAACCTGCTTTT--CCACTATA-TTTTGTGT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2021949 145 + 64289059 C------GTGCAAGTAGGCAAATGTGCTAAGAAACACAGGATAACC-TAGTTTGGATGTACTGGAAGTCAGGCTCTGC--TACCAGAGGAGTGGGGAACAGGAATTTCCGAACTAGACATACGTAGGTAATCCATTGTTT-CAATTATA-TTT--TGT i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 542837 147 + 2232271 TCTAACTGTACAAATGTGCAAGGAG----AGAAAGTTAGTTTACCCTTTCTTGTAATGTATTAGGAATCAAGTTCTAA--TATTAAT-TAAT-AGGAATAGGAATTTCTGAATTTTATATATGTAAATAATCTATTATTT-CTATTATA-TTT-GTGT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91406780 1046 - 120129022 I a score=4845163.000000 s hg38.chr2_KI270769v1_alt 34582 284 + 120616 TTTTAGCTCTGGTTTGTCAGGCTGGCACTACTAGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGAATTTGAACCCTTCGGAAATCTTGATCAGCCAGATCTTTATTACGAGTACTACCCGCACGTGTACCCTGGGCGCAGGGGTAAGGCCATG-GTATTTAATATTTGTACATTTGTCTG----------TGTGTCGCTCTGGTTTGCTTTGATTTATACATAATTTCGTAGCCTCAGTTTTCCTTA-TTTATCCAGTCTT-G---AAAAATCAGATAAGT-A-CCCAGCAACAAGCCT s panTro5.chr2A 3486867 284 + 111504155 TTTTAGCTCTGGTTTGTCAGGCTGGCACTGCTAGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGAATTTGAACCCTTTGGAAATCTTGATCAGCCAGATCTTTATTATGAGTACTACCCGCACGTGTACCCTGGGCGCAGGGGTAAGGCCATG-GTATTTAATATTTGTACATTTGTATG----------TGTGTCGCTCTGGTTTGCTTTGATTTATACATAATTTCATAGCCTCAGTTTTCCTTA-TTTATCCAGTCTT-G---AAAAATCAGATAAGT-A-CCTAGCAACAAGCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3357073 284 + 114371477 TTTTAGCTCTGGTTTGTCAGGCTGGCACTGCTAGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGAATTTGAACCCTTTGGAAATCTTGATCAGCCAGATCTTTATTATGAGTACTACCCGCACGTGTACCCTGGGCGCAGGGGTAAGGCCATG-GTATTTAATATTTGTACATTTGTATG----------TGTGTCGCTCTGGTTTGCTTTGATTTATACATAATTTCGTAGCCTCAGTTTTCCTTA-TTTATCCAGTCTT-G---AAAAATCAGATAAGT-A-CCTAGCAACAAGCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 232647 284 + 637652 TTTTAGCTCTGGTTTGTGAGGCTGGCACTACTAGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGAATTTGAACCCTTCGGAAATCTTGATCAGCCAGATCTTTATTACGAGTACTACCCGCACGTGTACCCTGGGCGCAGGGGTAAGGCCATG-GTATTTAATATTTGTACATTTGTATG----------TGTGTCGCTCTGGTTTGCTTTGATTTATACATAATTTCGTAGCCTCAGTTTTCCTTA-TTTATCCAGTCTT-G---AAAAATCAGATAAGT-A-CCTAGCAACAAGCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3028143 284 + 81552678 TTTTAGCTCTGGTTTGTGAGGCTGGCACTGCTAGTGAAGCTGGGCCTTTTCCAGAATGCTGAGATGGAATTTGAACCCTTTGGAAATCTTGATCAGCCAGATCTTTATTACGAGTACTACCCACACGTGTACCCTGGACGCAGGGGTAAGGCCATG-GTATTTAATATTTGTACATTTGTATG----------TGTGTCGCTCTGGTTTGCTTTGATTTATACATAATTTGGTAGCCTCAGTTTTCCTTA-TTTATCCAGTCTT-G---AAAAATCAGATAAGT-A-CCTAGCAACAAGCCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3290561 286 + 108979918 TTTTAGCTCTGGTTTGTGAGGCTGGCACTACTAGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGAATTTGAACCCTTTGGAAATCTTGATCAGCCAGACCTTTATTACGAGTACTACCCACACGTGTACCCTGGGCGCAGGGGTAAGGCCATG-GTATTTAATATTTGTACatttgtatg----------tgttttgctctggtttgctttgatttATACATAATTTGGTAGTCTCAGTTTTCCTTA-TTTATCCAGTCTC-G-AAAAAAATCAGATAAGT-A-CCTAGCAACAAGCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5003331 286 - 111193037 TTTTAGCTCTGGTTTGTGAGGCTGGCACTACTAGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGAATTTGAACCCTTTGGAAATCTTGATCAGCCAGACCTTTATTACGAGTACTACCCACACGTGTACCCTGGGCGCAGGGGTAAGGCCATG-GTATTTAATATTTGTACATTTGTATG----------TGTTTTGCTCTGGTTTGCTTTGATTTATACATAATTTGGTAGCCTCAGTTTTCCTTA-TTTATCCAGTCTC-G-AAAAAAATCAGATAAGT-A-CCTAGCAACAAGCCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3398107 286 + 3644372 TTTTAGCTCTGGTTTGTGAGGCTGGCACTACTAGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGAATTTGAACCCTTTGGAAATCTTGATCAGCCAGACCTTTATTACGAGTACTACCCGCACGTGTACCCTGGGCGCAGGGGTAAGGCCATG-GTATTTAATATTTGTACatttgtatg----------tgttttgctctggtttgctttgatttATACATAATTTGGTAGCCTCAGTTTTCCTTA-TTTATCCAGTCTC-G-AAAAAAATCAGATAAGT-A-CCTAGCAACAAGCCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3352753 286 - 10304083 TTTTAGCTCTGGTTTGTGAGGCTGGCACTACTAGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGAATTTGAACCCTTTGGAAATCTTGATCAGCCAGATCTTTATTACGAGTACTACCCACACGTGTACCCTGGGCGCAGGGGTAAGGCCATG-GTATTTAATATTTGTACATTTGTATG----------TGTTTTGCTCTGGTTTGCTTTGATTTATACATAATTTGGTAGCCTCAGTTTTCCTTA-TTTATCCAGTCTC-G-AAAAAAATCAGATAAGT-A-CCTAGTAACAAGCCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3435629 286 - 107702431 TTTTAGCTCTGGTTTGTGAGGCTGGCACTACTAGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGAATTTGAACCCTTTGGAAATCTTGATCAGCCAGATCTTTATTACGAGTACTACCCACACGTGTACCCTGGGCGCAGGGGTAAGGCCATG-GTATTTAATATTTGTACATTTGTATG----------TGTTTTGCTCTGGTTTGCTTTGATTTATACATAATTTGGCAGCCTCAGTTTTCCTTA-TTTATCCAGTCTC-G-AAAAAAATCAGATAAGT-A-CCTAGCAACAAGCCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 970289 286 + 1565135 TTTTAGCTCTGGTTTGTGAGGCTGGCACTACTAGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGAATTTGAACCCTTTGGAAATCTTGATCAGCCAGATCTTTATTACGAGTACTACCCACACGTGTACCCTGGGCGCAGGGGTAAGGCCATG-GTATTTAATATTTGTACatttgtatg----------tgttttgctctggtttgctttgatttATACATAATTTGGTAGCCTCAGTTTTCCTTA-TTTATCCAGTCTC-G-AAAAAAATCAGACAAGT-A-CCTAGCAACAAGCCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3341442 287 - 13651311 TTTTAGCTCTGGTTTGTGAGGCTGGCACTACTAGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGAATTTGAACCCTTTGGAAATCTTGATCAGCCAGATCTTTATTACGAATACTACCCACACGTGTACCCTGGGCGCAGGGGTAAGGCCATG-GTATTTAGTATTTGTACGTTTGTATG----------TGTTTTGCTCTGGTTTGCTTTGATTTATACATAGTTTGGTAGCCTCAGTTTTCCTTA-TTTATCCGGTCTT-GAAAAAAAATCAGATAAGT-A-CCTAGCAACAAGCCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3434038 284 - 108792865 TTTTAGCTTTGGTTTGTGAGGCTGGCGCTGCTAGTGAAGTTGGGCCTCTTCCAGAATGCTGAGATGGAATTTGAACCCTTTGGAAACCTTGATCAGCCAGATCTTTATTACGAGTACTACCCGCACGTGTACCCTGGGCGCAGGGGTAAGGCCGTG-GTGTTTCATGTTTGTGCGTTTGTATG----------TGCTTCGCTCTGGTTTGCTTTGGTTTATATATAATTTGGTAGCCGCAGTTTTCCTTA-TTTATCCAGTCTT-G---AAAAAGCAATTAAGT-A-CCCAGCAACAAGCCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3088489 284 - 7082604 TTTTAGCTTTGGTTTGTGAGGCTGGCGCTGCTAGTGAAGTTGGGCCTCTTCCAGAATGCTGAGATGGAATTTGAACCCTTTGGAAACCTTGATCAGCCAGATCTTTATTACGAGTACTACCCGCACGTGTACCCTGGGCGCAGGGGTAAGGCCATG-GTGTTTGATGTTTGTATGTTTGTGTG----------TGTTTTGCTCTGGTTTGCTTTGGTGTATACATAATTTGGTGGCTGCAGTTTTCCTTA-TTTATCCAGTTTT-G---AAAGAGCAATTAAGT-A-CCTAGCAACAAGCCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 574188 284 + 5243153 ttttagctttggtttgtGAGGCTGGCGCTGCTAGTGAAGTTGGGCCTCTTCCAGAATGCTGAAATGGAATTTGAACCCTTTGGAAACCTTGATCAGCCAGATCTTTATTACGAGTACTACCCGCACGTGTACCCTGGGCGCAGGGGTAAGGCCATG-GTGTTTCATGTTTGTACGTTTGTATG----------TGTTTCGCTCTGGTTTGCTTTGGTGTATACATAATTTGGTGGCCGCAGTTTTCCGTA-TTTATCCAGTCTT-C---AAAAAGCACTTAAGT-A-CCTAGCAAAAAGCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1907407 284 - 1938448 TTTTAGCTTTGGTTTGTGAGGCTGGCGCTGCTAGTGAAGTTGGGCCTCTTCCAGAATGCTGAGATGGAATTTGAACCCTTTGGAAACCTTGATCAGCCAGATCTTTATTACGAGTACTACCCGCACGTGTACCCTGGGCGCAGGGGTAAGGCCGTG-GTGTTTCATGTTTGTACGTTTGTATG----------TGTTTCGCTCTGGTTTGCTTTGGTTTATACATAATTTGGTAACCGCAGTTTTCCTTA-TTTATCCAGTCTT-G---AAAAAGCAGTTAAGT-A-CCTAGCAACAAACCT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2629066 283 - 159902609 TTTCAGCTTTGGTTTGTGAGGCTGGCACTGCTAGTGAAGTTGGGCCTCTTCCAGAATGCTGAAATGGAATTTGAACCCTTTGGAAATCTTGATCAGCCAGATCTTTATTATGAATACTACCCTCACGTATATCCTGGGCGCAGGGGTAAGGCAGCG-ATGTTTAATATTTGTGCATTTGCATG----------TATTTTGCTCTGCTTCACTTTGATTTATAAATACTTAGGT-TCCTCCGTTTTCTTTA-TTTACCCAGTCCT-A---AAAAGTCAAGTAAGT-A-CCTTGCAACAAGCCT i micMur3.chr8 C 0 I 292 s proCoq1.NW_012151163v1 942021 284 + 1238772 TTTCAGCTTTGGTTTGTGAGGCTGGCACTGCTAGTGAAGCTGGGCCTTTTCCAGAATGCCGAAATGGAATTCGAACCCTTCGGGAATCTCGATCAGCCGGATCTGTATTATGAATACTACCCTCATGTATATCCTGGGCGCAGGGGTAAGGCAGTG-ATGGTTAGCATTTGtgcatttgcata----------tgttttgctgtgcttcgctttgatttATGAATGATTAGGTATCCTCCGTTTTCTTTA-TGTGCCCAGTCCT-G---AAAAGTCAAGTAAGT-A-CCTTGCAACAAGCCT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2516561 267 + 5252280 TTTTAGCTTTGGTTTGTGAGGCTAGCACTGCTGGTGAAGTTGGGCCTTTTCCAGAATGCAGAAATGGAATTTGAACCCTTTGGAAATCTTGATCAGCCAGACCTTTATTACGAATACTACCCTCACGTGTACCCCGGGCGCAGAGGTGAGA-GGTG-ACACTCAGTATCTGT-CACTTACAGG----------TATTCTGTGGTGCTTCCCTTTGATT----------------TCCTCGGTTTTCTCTG-TTTACCCACTCCTAA---AAAAATCAAATAAGT-A-TCTAGCAATGAGCCT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91407826 271 - 120129022 TTTCAGCTCTGGTTTGTGAGGTTGGCGCTGCTGGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGAGTTTGAACCCTTTGGAAATCTGGATCAACCAGACCTATACTATGAATACTACCCACACGTGTACCCAGGACGCAGGGGTAAGGCAGTGAGTGCTGC---TTCATGCCAATGTATG----------TGT----------TCTACTGTGCTTTATACAAACTTCGAAACTCTGGCTTTTCTTTA-CCTTTTCAAATCT-G---AAAAACCAAATCAGT-AGCCTAGCAC--AGCCA i mm10.chr12 I 1046 C 0 s canFam3.chr17 2022095 282 + 64289059 TTTTAGCTTTGGTTTGTGAGGCTGGCACTGCTGGTGAAGCTGGGCCTTTTCCAGAATGCCGAGATGGAGTTTGAGCCCTTTGGAAATCTAGACCAGCCAGATCTGTATTACGAGTACTACCCTCACGTATACCCTGGGCGAAGGGGTAAGG-CATT-GCTTGTCGTATTTATGCCTTTGCATG----------TATTTTGCTTTGCTTTACTTTGCGTCACACAAAA-TAAGCATCCTCAGTTTTCCTAA-TATATCCGGTCTG-G---AAAAATCAAGTGAGT-AGCCTAGCAACGACCC- i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 542984 296 + 2232271 TTTTAGCTTTGGTTTGTGAGGCTGGCACTACTGGTGAAGTTGGGCCTTTTCCAGAATGCTGAAATGGAATTTGAACCCTTTGGAGATCTGGATAAACCAGACCTTTATTATGAATACTATCCTCATGTATATCCTGGGCGAAAGGGTAAGGCAATG-GTATTTAATATTTGTCTATTTGCATGTAATttactttgccttgccttgccttgccttgctttgcACATAATTAAGTATCCTCAGTTTTTCTTATTTTATCCAATCCT-G---AAAAATCAAATAAGTCA-CCTAACAACAAGCTT i dasNov3.JH580157 C 0 C 0 a score=280884.000000 s hg38.chr2_KI270769v1_alt 34866 23 + 120616 TGACTTACAGAATGCTCCCACTC s panTro5.chr2A 3487151 23 + 111504155 TGACTTACAGAATGCTCCCACTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3357357 23 + 114371477 TGACTTACAGAATGCTCCCACTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 232931 23 + 637652 TGACTTACAGAATGCTCCCACTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3028427 23 + 81552678 TGACTTACAGAATGCTCCCACTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3290847 23 + 108979918 TGACTTACAGAATGCTCCCACTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5003617 23 - 111193037 TGACTTACAGAATGCTCCCACTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3398393 23 + 3644372 TGACTTACAGAATGCTCCCACTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3353039 23 - 10304083 TGACTTACAGAATGCTCCCACTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3435915 23 - 107702431 TGACTTACAGAATGCTCCCACTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 970575 23 + 1565135 TGACTTACAGAATGCTCCCACTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3341729 23 - 13651311 TGACTTACAGAATGCTCCCACTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3434322 23 - 108792865 TGGCTTAGGGAATGCTGCCACTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3088773 23 - 7082604 TGACTTAGGGAATGCTCCCACTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 574472 23 + 5243153 TGTGGGAGGGAATCCTCCCACTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1907691 23 - 1938448 TGACTTAGGGAATGCTCCCACTC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 942305 23 + 1238772 TGACTCACAGAATGATCTCACTC i proCoq1.NW_012151163v1 C 0 I 265 s otoGar3.GL873658 2516828 23 + 5252280 TGGCTTACAGAATGATCCCGCCC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91408097 6 - 120129022 -----------------CCATTC i mm10.chr12 C 0 I 7 s canFam3.chr17 2022377 19 + 64289059 TGACTTACAGA----CCTCACTG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 543280 12 + 2232271 TAATTTACAAAA----------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2629349 292 - 159902609 I a score=2134776.000000 s hg38.chr2_KI270769v1_alt 34889 246 + 120616 CGATTTACCGAAACACTGACCTGGAGGTGCTCCCTGGTGCATCTGTTTGTACATTTAGCAGCTACGTGTCAAGCACCTGCTCTGTCAGGGCAGCATGATTTGGTGCAGGGGCC-GGGTAGT-----------AGACGTCTGAGCT---------GC-GCTCCACAGGGAAGAGC-CG-TCCCATATCG-------------------------------------------------------------GGACCTGGCGCACAGAGATGCAGAGCGG-------TGGAACCAAACGTGTCCGTG-------------------CATATGGCACACGCCGTGACATTTTCCGTTTGTC s panTro5.chr2A 3487174 246 + 111504155 CGATTTACCGAAACACTGACCTGGAGGTGCTCCCTGGTGCGTCTGTTTGTACATTTAGCAGCTACGTGTCAAGCACCTGCTCTGTCAGGGCAGCATGATTTGGTGCAAGGGCC-GGGTAGT-----------AGACGTCTGAGCT---------GC-GCTCCACAGGGAAGAGC-CG-TCCCATATCG-------------------------------------------------------------GGACCTGGCGCACAGAGATGCAGAGCAG-------TGGAACCAAACGTGTCCGTG-------------------CATATGGCACACGCCGTGACATTTTCCGTTTGTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3357380 245 + 114371477 CGATTTACCGAAACACTGACCTGGAGGTGCT-CCTGGTGCGTCTGTTTGTACATTTAGCAGCTACGTGTCAAGCACCTGCTCTGTCAGGGCAGCATGATTTGGTGCAAGGGCC-GGGTAGT-----------AGACGTCTGAGCT---------GC-GCTCCACAGGGAAGAGC-CG-TCCCATATCG-------------------------------------------------------------GGACCTGGCGCACAGAGATGCAGAGCAG-------TGGAACCAAACGTGTCCGTG-------------------CATATGGCACACGCCGTGACATTTTCCGTTTGTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 232954 307 + 637652 CGATTTCCCGAAACACTGGCCTAGAGGCGCTCCCTGGTGCGTCTGTTTGTACATTTAGCAGCCGCGTGTCAAGCACCTGCTCTGTCAGGGCAGCATGATTTGGTGCAGGGGCC-GGGTAGT-----------AGACGTCTGAGCC---------GC-GCTCCACAGGGAAGAGC-CG-TCCCATATCGGGACCTGGCCGGGTAGTAGACGTCTGAGCCGCGCTCCACGGGGAAGAGCCGTCCCATATCAGGACCTGGCGCACAGAGATGCAGAGCAG-------TGGAACCAAACGTATCCGTG-------------------CATGTGGCACACGCCGTGACGTTTTCCATTTGTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3028450 231 + 81552678 AGATTTACCAAAACACTGACCTGGAGTTGCTCCCTAGTGCGTCTGTTTGTACATTTAGCAGCCATGTGTCAAGCACCTGCTGTGTCAAG--CACCTGCT---GTGTCAAGGCA-GCATGGC-----------AGACGTCTGAGCT---------GC-GCTCCA----------C-TG-TCCCATATCG-------------------------------------------------------------GGACCTGGTGCACAGAGACGCAGAGCAG-------TGGAACCAAACGTGTCCGTG-------------------CATGTGGCACACACCATGACATTGTCCGTTTGTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3290870 247 + 108979918 AGATTTACCGAAACATTGACCTGGAGGTGCTCCCTGGTGTGTCTGTCTGTACATTTAGCAGCCGTGTATCTAGCACCTGGTGTGTCAAGGCAGCATGATGTGGTGCAGGGCCC-GGGTGGT-----------AGACGTCTGAGCT---------GT-GCTCCACAGGGAAGAAC-CG-TCCCATCTCG-------------------------------------------------------------GGACCTGATGCACAGAGAAGCAGAGCAG-------Tgaaaccaaacgtgtccgtg------------------ccatgtggcacacgccgcgacattttccattcgtc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5003640 247 - 111193037 AGATTTACCGAAACATTGACCTGGAGGTGCTCCCTGGTGTGTCTGTCTGTACATTTAGCAGCCGTGTATCTAGCACCTGGTGTGTCAAGGCAGCATGATGTGGTGCAGGGCCC-GGGTGGT-----------AGACGTCTGAGCT---------GT-GCTCCACAGGGAAGAAC-CG-TCCCATTTCG-------------------------------------------------------------GGACCTGATGCACAGAGAAGCAGAGCAG-------TGAAACCAAACGTGTCCGTG------------------CCATGTGGCACACGCCGCGACATTTTCCATTCGTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3398416 247 + 3644372 AGATTTACCGAAACATTGACCTGGAGGTGCTCCCTGGTGTGTCTGTCTGTACATTTAGCAGCTGTGTATTTAGCACCTGGTGTGTCAAGGCAGCATGATGTGGTGCAGGGCCC-GGGTGGT-----------AGACGTCTGAGCT---------GT-GCTCCACAGGGGAGAAC-CG-TCCCATCTCG-------------------------------------------------------------GGACCTGATGCACAGAGAAGCAGAGCAG-------Tgaaaccaaacgtgtccgtg------------------ccatgtggcacacggcgcgacattttccattcgtc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3353062 247 - 10304083 AGATTTACCGGAACACTGACCTGGAGGTGCTCCCTGGTGCGTCTGTCTGTACATTTAGCAGCCGTGTATCTAGCACCTGCTGTGTCAAGGCAGCATGATGTGGTGCAGGGCCC-GGGTGGT-----------AGACGTCTGAGCT---------GT-GCTCCACAGGGAAGAAC-CA-TCCCATCTCG-------------------------------------------------------------GGACCTGATGCACAGAGAAGCAGAGCAG-------Tgaaaccaaacgtgtccgtg------------------ccatgtggcacacgccacgacattttccattcgtt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3435938 247 - 107702431 AGATTTACCGAAACACTGACCTGGAGGTGCTCCCTGGTGCGTCTGTCTGTACGTTTAGCAGCCGTGTATCTAGCACCTGCTCTGTCAAGGCAGCATGATGTGGTGCAGGGCCC-GGGTGGT-----------AGACGTCTGAGCT---------GT-GCTCCACAGGGAAGAAC-CG-TCCCATCTCG-------------------------------------------------------------GGGCCTGATGCACAGAGAAGCAGAGCAG-------TGAAACCAAACGCGTCCGTG------------------CCATGTGGCACACGCCGTGACATTTTCCATTCGTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 970598 247 + 1565135 AGATTTACCGAAACACTGACCTGGAGGTGCTCCCTGGTGTGTCTGTCTGTACATTTAGCAGCCGTGTATCTAGCACCTGCTGTGTCAAGGCAGCATGATGTGGTGCAGGGCCC-GGGTGGT-----------AGACGTCTGAGCT---------GT-GCTCCACAGGGAAGAAC-CG-TCCCATCTCG-------------------------------------------------------------GGACCTGATGCACAGAGAAGCAGAGCAG-------TGAAACCAAACGTGtccgtg------------------ccatgtggcacacgccgcgacattttccgttcgtc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3341752 247 - 13651311 AGATTTACCAAAACACTGACCTGGAGGTGCTCCCTGATGCGTCTGTCTGTACATTTAGCAGCCGTGTATCTAGCACCTGCTCTGTCAAGGCAGCATGATTTGGTGCAGGGCCC-GGGTGGT-----------AGGCATGTGAGCT---------GT-GCTCCACAGGGAAGAAC-CG-TCCCATCTCA-------------------------------------------------------------GGACCTGATGCACAGAGAAGCAGAGCAG-------TGAAACCAAACGTGtccgtg------------------ccatgtggcacacgccgcgacattttccattcgtc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3434345 245 - 108792865 AGATTT-CTAATGCCCTGACCTGGAGGCGCTCCGTGGTACGTCCGTTTGAACGTTCAGCAGCCATTTGTCCCTCACCTGCTCTGTCAAGGCAGCACGATTCGGTGCAGGGGCC-GGGTGGT-----------CGACTCCCAAGCT---------GC-ACTCCGTAGCGAAGAGC-CA-TCCCATATCG-------------------------------------------------------------GGGCCTAATGTGCAGAGACGCAGCACGG-------TGACACCAAACGCACCCA-G------------------CCATGTGGCGCACGCCCTGACATTTTTCATTTGTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3088796 244 - 7082604 AGATTTACCGATGCCCTGACCTGGA-GCACTCTGTGGTGCGTCCGTTTGTACATTCAGCAGCCACTTGTCCCGCACCTGCTCTGTCAAGGCAGCACAATTCGGTGCAGGGGCC--AGTGGT-----------CGACTCCCAAGCT---------GC-GCTCCGCAGGGAAGAGC-CA-TCCCATACTG-------------------------------------------------------------GGGCCTGATGCGCAGAGACTCAGCACCG-------TGAAGCCAAATGCATCCG-G------------------CCACATGGCGCACACCCTGACATTTCCCATTTGTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 574495 246 + 5243153 AGATTTACGGATGCCCTGACCTGGAGGCGCTCCGTGGTGCGTCCGTTTGTACATGCAGCAGCCATGTGTCCCGCACCTGCTCTGTCAAGGCAGCACGATTTGGTGCAGGGGCC-GGGTGGT-----------CGACTCCCAGGCT---------GCGGCTCCGCAGGGAAGAGC-CA-TCCCATACC--------------------------------------------------------------AGGCCTGATGCGCAGAGACGCAGCGCAG-------TGAAGCCAAACGCGTCCA-G------------------CCATGTGGCGCACGCCCTGACATTTCCCATTTGTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1907714 245 - 1938448 AGATTTACTAATGCCCTGACCTGGAGGCTCTCCGTGGTGCACCCGTTTGTACATTCAGCAGCCATTTGTCCCGCACCTGCTCTGTCAAGGCAGCACGATTCGGTGCAGGGGCC--GGTGGT-----------CGACTTCCAAGCT---------GC-GCTCCGCAGGGCAGAGC-CA-TCCCATACCG-------------------------------------------------------------GGGCCTGATGCTCAGAGACACAGCGCAG-------TGAAGCCAAACGCGTCCG-G------------------CCACGTGGCGCATGCCCTGACATTTCCCATTTGTC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2516851 255 + 5252280 AGCTTTATAAATCCCCTGCCCTCCGAGTACTCACTGAGGCCTTCGTTGGttcatttaacagccgtttatcaggcacctgctgtgtCGAAGTCGCGTGACTCCCTGCAAGGACTTGGGCAGC-----------AGACTTCTGAACT---------GC-ACAGCCCAGTAACAAGT-AGCTTCCCTCACG-------------------------------------------------------------TACCTCTGTGTGtataaatgaaacaaaagcatccccaaaacaatacgcctctt-a------------------ccacggggcacacactgtgatattttctgttagtg i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91408110 176 - 120129022 ---TTTGTGAACATACTGACTAGGAGTGACTTGGTGTTTTCTGGGTCT-----CTTAGAGGCCAGCTGACAAGCACCTGCT-------------------------AGAACCT-G-----------------------TTACCCA---------GT-GTTCTCCAAGGGAGCAC-CG---CCATTGTG------------------------------------------------------------------------CCACAGCCGCA-------------CAAAACTGCATATGTTCCTGA---AGTT----------TCTGTTGGCAGCTGCAGGAAGAC------------ i mm10.chr12 I 7 C 0 s canFam3.chr17 2022396 250 + 64289059 AGTTTTCTAAACACGCTTACCCGGACATCCCCACTGGTACAGCCGTTCATTC-TCTAACAGCCGTGTCTCAGGCACCTGCCGTGGGACAGCAGTGGGGTTTGCTGTAAGACCT-GGGTAATGGTTTTTATTCAGAATTTTTGACT---------GT-GCTGCAGTGTAAACAACATA-ATCCTCATCA-------------------------------------------------------------TGACGTACT--ACAGGTACACAGAGAAG-------CAAACCCACACGTTCTTGCA------------------ACA------ATACCGTGTGCCGTTGTCTACCAGTC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 543292 262 + 2232271 -GTTTCATAAATACATCACAC-----GTGTTCACTGATTCATTCatttattcatttaacaaacatttattggacattta---tgtcaaagcagtgtGATTTGC--CATAGATT-GGATGGT-----------Agactttcaaacttttttggtcgt-gttccatagaaaaaata-c--ttttgtatca-------------------------------------------------------------tgacctagttcaaatatatgcatatgaa-------tgaaaaaaaaagtgttcatgagacagttcttctccttaccagatgaagcacactgtgatcttttctattagtc i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2629349 292 - 159902609 I e proCoq1.NW_012151163v1 942328 265 + 1238772 I a score=1437892.000000 s hg38.chr2_KI270769v1_alt 35135 111 + 120616 TCTATTCTGATTTAATTTATTTTAAAAATCTGGTTGTGGTTCACCCTTTGGGTCACGGTCACGACC-ATTGTTTGGAAAACACTAGGCTACAGCATAGGGTAGTTCTAGGAG s panTro5.chr2A 3487420 111 + 111504155 TCTATTCTGATTTAATTTATTTTAAAAATCTGGTTGTGGTTCACCGTTTGGGTCACGGTCACGACC-ATTGTTTGGAAAACACTAGGCTACAGCATAGGGTAGTTCTAGGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3357625 111 + 114371477 TCTATTCTGATTTAATTTATTTTAAAAATCTGGTTGTGGTTCACCGTTTGGGTCACGGTCACGACC-ATTGTTTGGAAAACACTAGGCTACAGCATAGGGTAGTTCTAGGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 233261 111 + 637652 TCTATTCTGATTTAATTTATTTTAAAAATCTGGTTGTGGTTCACCCTTTGGGTCACAGTCACGACC-ATTGTTTGGAAAACACTAGGCTACAGCATAGGGTAGTTCTAGGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3028681 111 + 81552678 TCTATTCTGATTTAATTTATTTTAAAAATCTGGTTGTGGTTCACCCTTTGGGTCACAGTCATGACC-ATTGTTTGGAAAACACTAGGCTACAGCCTAGGGTAGTTCCAGGAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3291117 111 + 108979918 tctattcttatttaatttattttaaaaatctggttgtgactcacCCTTTGGGTCACAGTCACGACC-ATGGTTTGGAAAACACTAGGCTATAGCATAGGGTAGTTCTAGGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5003887 111 - 111193037 TCTATTCTTATTTAATTTATTTTAAAAATCTGGTTGTGACTCGCCCTTTGGGTCACAGTCACGACC-ATGGTTTGGAAAACACTAGGCTATAGCATAGGGTAGTTCTAGGAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3398663 111 + 3644372 tctattcttatttaatttattttaaaaatctggttgtgactcaccctttgggtcacagtcacgacc-atggtttggaaaacactAGGCTATAGCATAGGGTAGTTCTAGGAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3353309 108 - 10304083 tcta---ttgtataatttattttaaaaatctggttgtgactcacCCTTTGGGTCACAGTCACGACC-ATGGTTTGGAAAACACTAGGCTATAGCATAGGGTAGTTCTAGGAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3436185 111 - 107702431 TCTATTCTTATTTAATTTATTTTAAAAATCTGGTTGTGACTCACCCTTTGGGTCACAGTCACGACC-ATGGTTTGGAAAACACTAGGCTATAGCATAGGGTAGTTCTAGGAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 970845 108 + 1565135 tcta---ttatttaatttattttaaaaatctggttgtgactcacCCTTCGGGTCACAGTCACCACC-ATGGTTTGGAAAACACTAGGCTATAGCATAGGGTAGTTCTAGGAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3341999 111 - 13651311 tctattcttatttaatttactttaaaaatctggttgtgactcacCCTTTGGGTCACAGTCACGAGC-ATGGTTTGGAAAACGCTAGGCTATAGCATAGGGTAGTTCTAGGAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3434590 111 - 108792865 TCTATTCTGATGTAATTTATTTTAAAAATCTGCTTGTAGCTCATCCTTTGGGTCACAGTCACAACC-GTTGTTTGGAAAACACTGGGCTACAGCATAGGGCCGTTCTAGGAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3089040 97 - 7082604 TCTA-TCTGATGTAATTCATTTAAAAAATCTGCTTGTGGCTCATCCTTTGGGTCACAGTCACCACC-ATTGTTTGGAAAACACT-------------GCGCCATTCTAGGAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 574741 96 + 5243153 TAT--TCTGATGTAATTCATTTTAAAAATCTGCTTGTGGCTCATCCTTTGGGTCACAGTCACGACC-ATTGTTTGGAAAACACT-------------GAGCCATTCTAGGAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1907959 111 - 1938448 TCTATTCTGATGTAATTTATTTTAAAAATCTGCTTGTGGCTCATCCTTTGGGTCACAGTCACGACC-GTTGTTTGGAAAACACTGGGCTACAGCATAGGGCCGTTCTAGGAG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2629641 110 - 159902609 tctattctgatttaatttattttcaaaatccagtgatggcccacCCACCGGGTTACAGTCAC-ACC-ATTGTCTGGAAAGCACTGGGCTACAGCGTAGGGTAGTTTCAGGAG i micMur3.chr8 I 292 I 448 s proCoq1.NW_012151163v1 942593 110 + 1238772 tctattctgatttaatttattttaaaaatctggttatggcccacCCACTGGGTTACAGTCGC-ACC-ATTGTCTGGAAAACCCTGGGCCACGGCATAGGGCAGTTCCAGGAG i proCoq1.NW_012151163v1 I 265 C 0 s otoGar3.GL873658 2517106 104 + 5252280 tctattctaacttaatttagtttcaaagtctgcttatgacccacCCACTAGGTCATG------ACT-ACTGTCTAAAAAACAC-AAGCCACAGCATAGGGCAGTTCTACGAG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91408286 96 - 120129022 TCTGTTCT----TAATTTATTTTAAGATTTTGGTTATAGC-AATGGAGGGCATCACAGTCTCTACC-GT---------AACACAAGGCCATAGCAT-GGACTGTTCTAGGAC i mm10.chr12 C 0 C 0 s canFam3.chr17 2022646 103 + 64289059 TCTGCCCTGATATAACTTACAT-AAGACACTGGTTACAGTCC-CCCAGTGAGTCCTAG------CC-ATCGTTTGGAAGATGCCGCGCTGCAACCCGGGATAGTTGTCAGAG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 543554 93 + 2232271 tctattctgatttaatttatttggaaaaTAAATTAATGG------------------ATCATGACCTATTGCTTAAACAACATT-GGTTAGAACGTACGGTAGTTCTTGGAA i dasNov3.JH580157 C 0 C 0 a score=123725.000000 s hg38.chr2_KI270769v1_alt 35246 12 + 120616 AGTGACAAGAAA s panTro5.chr2A 3487531 12 + 111504155 AGTGACAAGAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3357736 12 + 114371477 AGCGACAAGAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 233372 12 + 637652 AGTGACAAGAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3028792 9 + 81552678 AGTGAC---AAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3291228 12 + 108979918 AGTGACAGGAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5003998 12 - 111193037 AGTGACAGGAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3398774 12 + 3644372 AGTGACAGGAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3353417 12 - 10304083 AGTGACAGGAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3436296 12 - 107702431 AGTGACAGGAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 970953 12 + 1565135 AGTGACAGGAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3342110 12 - 13651311 AGTGACAGGAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3434701 12 - 108792865 GATGACAAGAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3089137 12 - 7082604 GGTGACAAGAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 574837 12 + 5243153 GGTGACGAGAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1908070 8 - 1938448 GGTGAC----AA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 942703 12 + 1238772 GGTGGCAAGAAA i proCoq1.NW_012151163v1 C 0 I 458 s otoGar3.GL873658 2517210 7 + 5252280 GGTGGCA----- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91408382 12 - 120129022 AGGGGCAAAAAG i mm10.chr12 C 0 C 0 s canFam3.chr17 2022749 9 + 64289059 ---AGTAAGAAA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 543647 12 + 2232271 AATGGCAAAAAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2629751 448 - 159902609 I a score=405108.000000 s hg38.chr2_KI270769v1_alt 35258 45 + 120616 CCACCAGTTGGGAAGGGAGAAGGGCGGGTTACGGAGAGCCTTCTG s panTro5.chr2A 3487543 45 + 111504155 CCACCAGTTGGGAAGGGAGAAGGGCGGGTTACGGAGAGCCTTCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3357748 45 + 114371477 CCACCAGTTGGGAAGGGAGAAGGGCGGGTTACGGAGAGCCTTCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 233384 45 + 637652 CCACCAGTTGGGAAGGGAGAAGGGCGGGTTACGGAGAGCCTTCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3028801 44 + 81552678 TCACCAGTTGGGAAGGGAGGA-GGCGGGTTATGGAGAGCCTTCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3291240 44 + 108979918 TCAACAGTTGGGAAGGGAGAA-GACGGGTTACGGAGAGCCTTCTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5004010 44 - 111193037 TCAACAGTTGGGAAGGGAGAA-GACAGGTTACGGAGAGCCTTCTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3398786 44 + 3644372 TCAACAGTTGGGAAGGGAGAA-GACGGGTTACGGAGAGCCTTCTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3353429 44 - 10304083 TCAACAGTTGGGAAGGGAGAA-GACGGGTTACGGAGAGCCTTCTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3436308 44 - 107702431 TCAACAGTTGGGAAGGGAGAA-GACGGGTTACGGAGAGCCTTCCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 970965 44 + 1565135 TCAACAGTTGGGAAGGGAGAA-GACGGGTTACAGAGAGCCTTCTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3342122 44 - 13651311 TCAACGGTTGGGAAGGGGGAA-GACGGGTTACGGAGAGCCTTCGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3434713 44 - 108792865 GAGACAGTTGGGAAGGGAGAG-GGCGGGTCGTAGCGAGCCGTGTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3089149 44 - 7082604 GAAACAGTTGGGAAGGGAGAG-GGTGGGTCACGGAGAGCCGTCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 574849 44 + 5243153 GAAACAGTTGGGAAGGGAGAG-GGTGGGTCACGGAGAGCCGTCTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1908078 44 - 1938448 GAAACAGTTGAGAAGGGAGAG-GGTGGGTCACGGAGAGCCGTCTG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2517217 33 + 5252280 ----------GGAAGTAAGGGGGGCAGACCATG--AGACCTTCCA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91408394 43 - 120129022 -TAAGGCTGGAGAAAAGGAGA-TTAAAACTGTCTAGAGCCTTTTG i mm10.chr12 C 0 I 1652 s canFam3.chr17 2022758 40 + 64289059 TAAGGACTGGGGGAGGGAGAG-CACAAAT----GATAGCCTCCCA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 543659 44 + 2232271 TAAAAATTGAGGTCAGGAAAG-GCCAGATTATGAAGACCCCTCTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2629751 448 - 159902609 I e proCoq1.NW_012151163v1 942715 458 + 1238772 I a score=264500.000000 s hg38.chr2_KI270769v1_alt 35303 28 + 120616 CAGCACTGGGAGCCTT---GTGCAGTGTGCG s panTro5.chr2A 3487588 28 + 111504155 CAGCACTGGGAGCCTT---GTGCAGTGTGCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3357793 28 + 114371477 CAGCACTGGGAGCCTT---GTGCAGTGTGCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 233429 28 + 637652 CAGCACTGGGAGCCTT---GTGCAGTGTGCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3028845 28 + 81552678 TAGCATGGGGAGCCTT---GTGCAATGTGCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3291284 28 + 108979918 CAGCACTGGGAGCCTT---GTGCAATGTGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5004054 28 - 111193037 CAGCACTGGGAGCCTT---GTGCAATGTGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3398830 28 + 3644372 CAGCACTGGGAGCCTT---GTGCAATGTGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3353473 28 - 10304083 CAGCACTGGGAGCCTT---GTGCAATGTGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3436352 28 - 107702431 CAGCACTGGGAGCCTT---GTGCAATGTGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 971009 28 + 1565135 CAGCACTGGGAGCCTT---GTGCAATGTGTG i manLeu1.NW_012104432v1 C 0 I 10918 s colAng1.NW_012118821v1 3342166 28 - 13651311 CAGCACTGGGAGCCTT---GTGCAATGTGCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3434757 27 - 108792865 CAGCGCT-GTAGCCTT---GTGCAATGCACG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3089193 27 - 7082604 CAGCACT-GTAGCCTT---GTGCGATGCATG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 574893 27 + 5243153 CAGCGCT-GTAGCGTT---GTGCAATGCGTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1908122 27 - 1938448 CAGTGCT-GTAGCCTT---GTGCAATGCACG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2517250 31 + 5252280 CCCCACTGGGAGCCTCGAAGTAGGACGCACA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2022798 31 + 64289059 GGGTGTGAGCAGCCTTGAGGTGGAGCGAACG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 543703 31 + 2232271 TGGCACTTGGAGCCTTAAAGTAGAATGTACA i dasNov3.JH580157 C 0 I 1 e micMur3.chr8 2629751 448 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 942715 458 + 1238772 I a score=11849.000000 s hg38.chr2_KI270769v1_alt 35331 1 + 120616 T s panTro5.chr2A 3487616 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3357821 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 233457 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3028873 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3291312 1 + 108979918 T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5004082 1 - 111193037 T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3398858 1 + 3644372 T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3353501 1 - 10304083 T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3436380 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3342194 1 - 13651311 T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3434784 1 - 108792865 T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3089220 1 - 7082604 T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 574920 1 + 5243153 T i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1908149 1 - 1938448 T i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2517281 1 + 5252280 C i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2022829 1 + 64289059 T i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 543735 1 + 2232271 T i dasNov3.JH580157 I 1 C 0 e micMur3.chr8 2629751 448 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 942715 458 + 1238772 I e manLeu1.NW_012104432v1 971037 10918 + 1565135 I a score=3923077.000000 s hg38.chr2_KI270769v1_alt 35332 402 + 120616 CTCTTGGTGGAGAACCTCATAAATATGTTTGAAGCCTCTCATGTGT---TCTTAAATA-----GAAAACAGTCCTGGCAGG--ATGTCTTGTGAGG-Gcagtgtaa-gc--agctattgaaagcccacgccctgttgtcaggcatccccagttacatcctgcttcccccattgaat--cg---cgtagccttggaggagttatctgacatctctgtgccccagtgtccttattggtaaaacagagatgccaatcctccttgctgcct---gggttgtcct-aaagatcaaatgatgtcacgtgta-agttgcttggaataatggctgctatctagtaCCA---ACTGTATTTGCTGGTTTTCTTACTCTCTTCCGAATGTATCA-----------GTAACATGGGAAAGTCTCGCACTGCCGCA-TTTTGCAGGCTCGATT--- s panTro5.chr2A 3487617 402 + 111504155 CTCTTGGTGGAGAACCTCATAAATATGTTTGAAGCCTCTCATGTGT---TCTTAAATA-----GAAAACAGTCCTGGCAGG--ATGTCTTGTGAGG-Gcagtgtaa-gc--agctattgaaagcccacgccctgttgtcaggcatccccagttacatcctgcttcccccattgaat--cg---cgtagccttggaggagttatctgacatctctgtgccccagtgtccttattggtaaaacagagatgccaatcctccttgctgcct---gggttgtcct-aaagatcaaatgatgtcacgtgta-agttgcttggaataatggctgctatctagtaCCA---ACTGTATTTGCTGGTTTTCTTACTCTCTTCCGAATGTATCA-----------GTAACATGGGAAAGTCTCGCACTGCCGCA-TTTTGCAGGCTCGATT--- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3357822 402 + 114371477 CTCTTGGTGGAGAACCTCATAAATATGTTTGAAGCCTCTCATGTGT---TCTTAAATA-----GAAAACAGTCCTGGCAGG--ATGTCTTGTGAGG-Gcagtgtaa-gc--agctattgaaagcccacgccctgttgtcaggcatccccagttacatcctgcttcccccattgaat--cg---cgtagccttggaggagttatctgacatctctgtgccccagtgtccttattggtaaaacagagatgccaatcctccttgctgcct---gggttgtcct-aaagagcaaatgatgtcacgtgta-agttgcttggaataatggctgctatctagtaCCA---ACTGTATTTGCTGGTTTTCTTACTCTCTTCCGAATGTATCA-----------GTAACATGGGAAAGTCTCGCACTGCCGCA-TTTTGCAGGCTCGATT--- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 233458 402 + 637652 CTCTTGGTGGAGAACCTCATAAATATGTTTGAAGCCTCTCATGTGT---TCTTAAATA-----GAAAACAGTCCTGGCAGG--ATGTCTTGTGAGG-Gcagtgtaa-gc--agctattgtaagcccacgccctgttgtcaggcatccccagttacatcctgcttcccccattgaat--ca---tgtaaccttggaagagttatctgacatctctgtgccccagtgtccttattggtaaaacagagatgccaatcctccttgctgcct---gggttgtcct-aaagattaaatgatgtcatgtgta-aattgcttggaatagtggctgctatctagtaCCA---ACTGTATTTGCTGGTTTTCTTACTCTCTTCTGAATGTATCA-----------GTAACATGGGAAAGTCTCGCACTGCCGCA-TTTTGCAGGCTCGAGG--- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3028874 401 + 81552678 CTCTTGGTGGAGAACCTTATAAATATGTTTGAAGCCTCTCATATGT---TCTTAAATA-----GAAAACAGTCCTGGCAAG--GTGTCTCACGAGG-Gcagtgtaa-gc--agctattgaaagcccacgccccgttgtcagacatccccagttacatcctgcttcccccgttgact--cg---tgtagccttgggggagttatctgacatctctgtgccccagtgtccttattggtaaaacagagatgccaatcctcctcgcttcct---gggttgtcct-gaagattaaatgatgtcatgtgta-agttgcttggaatagtggctgctatctagtaCCA---ACTGTATTTGCTGGTTTTCTTACTCT-TTCCGAATGTATCA-----------GTAACATGGGAAGGTCTCGCACTGCCGCA-ATTTGCAGGCTGAATT--- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3291313 401 + 108979918 CTCTTGGTGAAGAACCTTATAAATATGTTTGAAGCCCCTCATATGT---TCTTAAATA-----GAAAACAGTCCTGGCAGG--ATGTCTCATGAGG-GCGGTGTAA-GC--ACCTgttgaaagcccaggccctgttgtcaggcatccccagttacatcctggttacatcactgact--cg---tgtagccttgggggagttatctgacctctctgtgccccagtgtccttatcagtaaaacagatatgccaatcctgcttgcttcct---ggattgtcct-gaagattaaatgatgtca-gtgta-agttgcttggaatagtggctgctctctagtaCCA---GCTGTATTTGCCAGTTTTCTTACTGTCTTCTGAATGTATCA-----------GTGACACGGGAGAGTCTCGCACTGCCGCG-TTTTGCAGGCTCGATT--- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5004083 401 - 111193037 CTTTTGGTGAAGAACCTTATAAATATGTTTGAAGCCCCTCATATGT---TCTTAAATA-----GAAAACAGTCCTGGCAGG--ATGTCTCATGAGG-GCGGTGTAA-GC--AGCTgttgaaagcccaggccctgttgtcaggcatccccagttacatcctggttacatcactgact--cg---tgtagccttgggggagttatctgacctctctgtgccccagtgtccttatcagtaaaacagatatgccaatcctgcttgcttcct---ggattgtcct-gaagattaaatgatgtca-gtgta-agttgcttggaatagtggctgctctctagtaCCA---GCTGTATTTGCCAGTTTTCTTACTGTCTTCTGAATGTATCA-----------GTGACACGGGAGAGTCTCGCACTGCCGCG-TTTTGCAGGCTCGATT--- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3398859 401 + 3644372 CTCTTGGTGAAGAACCTTATAAATATGTTTGAAGCCCCTCATATGT---TCTTAAATA-----GAAAACAGTCCTGGCAGG--ATGTCTCATGAGG-GCGGTGTAA-GC--AGCTgttgaaagcccaggccctgttgtcaggcatccccagttacatcctggttacatcactgact--cg---tgtagcctttggggagttatctgacctctctgtgccccagtgtccttatcagtaaaacagatatgccaatcctgcttgcttcct---ggattgtcct-gaagattaaatgatgtca-gtgta-agttgcttggaatagtggctgctctctagtaCCA---GCTGTATTTGCCAGTTTTCTTACTGTCTTCTGAATGTATCA-----------GTGACACGGGAGAGTCTCGCACTGCCGCG-TTTTGCAGGCTCGATT--- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3353502 401 - 10304083 CTCTTGGTGGAGAACCTTATAAATATGTTTGAAGCCCCTCATATGT---TCTTAAATA-----GAAAACAGTCCTGGCAGG--ATGTCTCATGAGG-GCGGTGTAA-GC--AGCTgttgaaagcccaggccctgttgtcaggcatccccagttacatcctggtacccccactgact--cg---tgtagccttgggggagttatctgacctctctgtgccccagtgtccttgtcggtaaaacagatatgccattcctgcttgcttcct---ggattgtccc-gaagattaaatgatgtca-gtgta-agttgcttggaatagtggctgctctctagtaCCA---GCTGTATTTGCTGGTTTTCTTACTCTCTTCTGAACATATCA-----------GTGACACGGGAGAGTCTCGCACTGCCGCG-TTTTGTAGGCTCGATT--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3436381 402 - 107702431 CTCTTGGTGGAGAACCTTATAAATATGTTTGAAGCCCCTCATATGT---TCTTAAATA-----GAAAACAGTCCTGGCAGG--ATGTCTCATGagg-gtggtgtaa-gc--agctgttgaaagcccaggccctgttgtcaggcatccccagttacatcctggtacccccactgact--cg---tgtagccttgggggagttatctgacctctctgtgccccagtgtccttatcggtaaaacagatatgccagtcctgcttgcttcct---ggattgtcct-gaagattaaatgatgtcgtgtgta-agctgcttggaatagtggctgctctctagtaCCA---GCTGTATTTGCTGGTTTTCTTACTCTCTTCTGAACGTATCA-----------GTGACGTGAGAAAGTCTCACACTGCCGCG-TTTTGCAGGCTCGATT--- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 981955 401 + 1565135 CTCTTGGTGGAGAACCTTATAAATATGTTTGAAGCCCCTCATATGT---TCTTAAATA-----GAAAACAGTCCTGGCAGG--ATGTCTCATGAGG-GCGGTGTAA-GC--AGCTgttgaaagcccaggccctgttgtcaggcatccccagttacatcctggtacccccactgact--cg---tgtagccttgggggagttatctgacctctctgtgccccagtgtccttgtcggtaaaacagatatgccagtcctgcttgcttcct---ggattgtccc-gaagattaaatggtgtca-gtgta-agttgcttggaatagtggctgctctctagtaCCA---GCTGTATTTGCCGGTTTTCTTACTCTTTTCTGAACGTATCA-----------GTGACACGGGAGAGTCTCGCACTGCCGCG-TTTTGCAGGCTCGATT--- i manLeu1.NW_012104432v1 I 10918 C 0 s colAng1.NW_012118821v1 3342195 401 - 13651311 GTCTTGGTGGAGAACCTTATAAATATGTTTGAAG-CCCTTATATGT---TCTTAAATA-----GAAACCAGTCCCGGCAGGATATGTCTCATGAGG-GCGGTGGAA-GC--AGCTgttggaagcccaggccctgttgtcaggcatccccagttacatcctggtacc--cgctgacc--cg---tgtggccttgggggaggtatctgacatctctgtgtcccagcgtccttatcggtgagacagatatgccagtcctgcctgcttcct---ggattgtcct-gaagattaaacgatgtcatgtgta-agttgcttggaatagtggctgctatctagtaCCA---ACTGTGTTTGCTGGTTTTCTTTCTCTCTTCTGAATGCATCA-----------GTGACACGGGAAAGTCTCGCACTGCCGCG-TTTTGCAGGCTCGATT--- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3434785 399 - 108792865 CTCTCAGTGGAGAACCTTGCAAATATGTTTGAAAGCTCTCGTATGTTGTTCTTAAATA-----GAAAACAGTCCTGGCAGG---TGTCTCGTGAgg-gcagtgtaa-gc--agctgttgaaaggccaggctctgctgtcaggcatccccagttacatcctggttcccccattgacg--------gtagccttgggggcgtgatgtgacatctctgtgtcccagcgtccttattggtaaaacagagatgacagtcctccttgcgtcct---ggggtgtcatggaagattaaatgatgccgtgtgta-agctgattagaatagt-gcTGCTGTCTAGTACCA---GCTGTATTTGCTGGTTTTCTTACTCTCTTCCGGATCGATCA-----------GCGGC--GGGAAGGTCTCGTGCCGCCGCG-TGCTGCAGGCTCCGTT--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3089221 397 - 7082604 CTCTAAGTGGAGAACCTTGCAAATATGTTTGAAACCTCTC--ATGTTCTTCTTAAATA-----GAAAACAGTCCTGGCAGG---TGTCTCGTGAGG-Gcagtgtaa-gc--agctgttgaaagcccaggccctgctgtcaggcatccctagttacatcctggttcccccatggact--------gtagccttgggggtgtgatgtgacatctctgtgtcccagcgtccttattggtaaaacagagatgacagtcctccttgcttcct---ggggtgtcat-gaagattaaatgatgccatgtgta-agctgattagaatggcggctgctatctagtacca---gctgtatttgctggttTTCTTACTGTCTTCCGGATTGATCA-----------CTGGC--CGGAAAGTCTCATGCCACCGCG-TGCTGCAGGTTTGGTT--- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 574921 398 + 5243153 CTCTCAGTGGAGAACCTTGCAAATATGTTTGAAACCTCTCATGTGTTCCTCTTAAACA-----GAAAACAGTCCTGGCAGG---TATCTCGTGAGG-Gcagtgtaa-gc--agctgttgaaagcccaggccctactgtcaggcatccccagttacatcctggttctgccattgact--------gtagccttgggggcatgatgtgacatctctgtgtcccagcatccttattggtaaaacagagatgacagtcctccttgcttcct---ggggtgtcac-aaagattaaatgatgtcatgtgga-agctgattagaatggtggctgctatctagAACCA---GCTGTATTTGCTGGTTTTCTTACTCTCTTCCGGATTGATCA-----------GTGGC--GGGAAAGTCTCGTGCCGCCGCG-TGCTGCAGGCTCGGT---- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1908150 394 - 1938448 CTCTCAGTGGAGAACCTTGCAAATATGTTTGAAACCTCTCATGTGTTCTTCTTAAATA-----GAAAGCAGTCCTGGCAGG---TGTCTCGTGAgg-gcagtgtaa-gc--agctgttgaaagcccaggccctgctgtcaggcatccccagttacatcctggttcccccattgact--------gtagccttgggggcgtgatgtgacatctctgtgtcccagcgtccttattggtaaaacagagatgacagtcctccttgcttcct---ggggtgtcat-gaagattcagtgatgtcgtgtgta-agctgatta-----gTGGCTGCTATCTAGTACCA---GCCGTATTTGCTGGTTTTCTTACTCTCTTCCGGATTGATCA-----------ACGGC--AGGAAAGTGTCGTGCCGCCGCG-TGCTGCAGGCTCGATT--- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2517282 354 + 5252280 CTCCTAGTGGGGGACCTGGTAAGC-TGTGTGCAGCCT--------T---CACAAAATA-----GAAAACAGCCTTGGAAGG--GTGTCTCCAGAGACGCAGTGCAGCTC--GGTCATTGAAAG-CTGGGCCCTGCAGTCAGA--------------------------CCGTGACT--CG---TA-Aacctccagcaggttgtttgatgcttctgt-ccccaatatccttagtggtaaaacag--atggtaatcctgc-tgcttccttaaaggacatcat-gaaaacgaacggatgtcc---------------agaacaggggccaacacatagtaGAAATTACTGCATTCGTTGTTTTTCTTATTCTATTCTGAATTAATGA-----------GCAAC--AAATTAGACTCATATTGCCGTGTTTTTGTAAGATCTACT--- i otoGar3.GL873658 C 0 I 1 s canFam3.chr17 2022830 370 + 64289059 TTCTCGGTGGAGAACCTTATGA-TCTGT-CGAAACCCATCACATGTTCCTATTGAACA-----TAAAGCAGTTTAGAGAGG-GACTTCtgctgagg-g---------gc---------------cagggctccatggtcagccttcct--ggtaagtcctggc-ccttcactgagctgcg---tggggtcctggccaagtgatccagtgtctttgtgtcctggcatccttaccaggacagcagg---ggcaattcc-------ttct---aggatgtcat-aaagatcaagcgaggtcatatatgcgggtgttcagtacagtggctggcacatggtgaCA---ACTGTCTTAGCTTCTTGTCATGTTCTGCTCTTAATCCATCA-----------GGAACACACTGTAGATT---ACTGTCGTC-TTGTGTAAGATCAGCT--- i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 543736 416 + 2232271 CTCTTGTTAGAGAACTTTAGAGAAATGTTTGCAATCCATCATATTT---TCATATTTAATTTTAAAAACAATTTTGGAAGG--ATTTCTATTAAGAAGTagtataa-acatagttattaaaagcatggaccctgtagttagactgcttgggttaaatgctggcacctccacttact--tgttttataaccttgggcaatttattaaa---ctttgtacctcactgtccttatcggaaaaacaagaat---aattatacttacttcct--aggggtgccat-gacaattaaatgatttattgtgta-agttgcttataattgtgactggcacattgtaaTT---ATTACATTTG--GGTTTTTTT----TCATTTGATTTTATTATATTCTTAAGTACCATACTTTAGATTCTAATCCTGCCATT-TTTGGTAAAATCAAAACTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2629751 448 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 942715 458 + 1238772 I a score=2620442.000000 s hg38.chr2_KI270769v1_alt 35734 205 + 120616 GTCAGCATTTGTTGGCTGCAGCAGTGGAGCTACAGAGAATGGTCCTAGTTGTCAGGAAATGCAGAGCCTGATTGGAGGTAGAAAATATTTAA----AACCAGTGGTACAAGAG-----A-TGCAAAGGCCTGATTAATAATA-AAATAATAATTCCTATAGAAGTCTCAGAAAATTTAAATAAAC--ATTCTGTTGAACTTGGTTGATAC---TAGTAGGT s panTro5.chr2A 3488019 205 + 111504155 GTCAGCATTTGTTGGCTGCAGCAGTGGAGCTACAGAGAATGGTCCTAGTTGTCAGGAAATGCAGAGCCTGATTGGAGGTAGAAAATATTTAA----AACCAGTGGTACAAGAG-----A-TGCAAAGGCCTGATTAATAATA-AAATAATAATTCCTATAGAAGTCTCAGAAAATTTAAATAAAC--ATTCTATTGAACTTGGTTGATAC---TAGTAGGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3358224 205 + 114371477 GTCAGCATTTGTTGGCTGCAGCAGTGGAGCTACAGAGAATGGTCCTAGTTGTCAGGAAATGCAGAGCCTGATTGGAGGTAGAAAATATTTAA----AACCAGTGGTACAAGAG-----A-TGCAAAGGCCTGATTAATAATA-AAATAATAATTCCTATAGAAGTCTCAGAAAATTTAAATAAAC--ATTCTATTGAACTTGGTTGATAC---TAGTAGGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 233860 205 + 637652 GTCAGCATTTGTTGGCTGCAGCAGTGGAGCTACAGAGAATGGTCCTAGTTGTCAGGAAATGCAGGGCCTGATTGGAGGTAGAAAATATTTAA----AACCAGTGGTACAAGAG-----A-TGCAAAGGCCTGATTAATAATA-AAATAATAATTCCTATAGAAGTCTCAGAAAATTTAAATAAAC--ATTCTGTTGAACTTGGTTGATAC---TAGTAGGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3029275 205 + 81552678 GTCAGCATCTGTTGGCTGAGGCAGTGGAGCTACAGAGAATTGTCCTAGTTGTCAGGAAATGCAGAGCCTGATTGGAGGTAGAAAATGTTTAA----AACCAGTGGTACAAGAG-----A-TGCAAAGTCCTGATTAATAATA-AAATAATAATTCCTATAGAAGTCTCAGAACATTTAAATAAAC--ATTCTGTTGAACTTGGTTGATAC---TAGTAGGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3291714 205 + 108979918 GTCAGCATTTGTTGGCTGCGGCAGTGGAGCTACGGAGAATGGTCCTAGGTGTCAGGAAATGCAGAGCCTGATCGGAGGTAGAAAATTTTTAA----AACCAGCAGTACAAGAC-----A-TGCAAAGGCCTGATTAATAATA-AAATAATAATTCCTATAGAAGGCTCAGAAAATTTAAATAAAC--ATTCTATTTAACTTAGTTGATAC---TAGTAAGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5004484 205 - 111193037 GTCAGCATTTGTTGGCTGCGGCAGTGGAGCTATGGAGAATGGTCCTAGGTGTCAGGAAATGCAGAGCCTGATCGGAGGTAGAAAATATTTAA----AACCAGCAGTACAAGAC-----A-TGCAAAGGCCTGATTAATAATA-AAATAATAATTCCTATAGAAGGCTCAGAAAATTTAAATAAAC--ATTCTATTTAACTTAGTTGATAC---TAGTAAGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3399260 205 + 3644372 GTCAGCATTTGTTGGCTGCGGCAGTGGAGCTACGGAGAATGGTCCTAGGTGTCAGGAAATGCAGAGCCTGATCGGAGGTAGAAAATATTTAA----AACCAGCAGTACAAGAC-----A-TGCAAAGGCCTGATTAATAATA-AAATAATAATTCCTATAGAAGGCTCAGAAAATTTAAATAAAC--ATTCTATTTAACTTAGTTGATAC---TAGTAAGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3353903 200 - 10304083 GTCAGCATTTGTTGGCTGCGGCAGTGGAGCTATGGAGAATGGTCCTAGGTGTCAGGAAATGCAGAGCCTGATCGGAGGTAGAAAATATTTAA----AACCAGCAGTACAAGAG-----A-TGCAAAGGCCTGATTAATAATA-AAATAATAATTCCTATAGAAGGCTCAGAAAATTTAAATAAAC--ATTCTAT-----TTAGTTGATAC---TAGTAAGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3436783 205 - 107702431 GTCAGCATTTGTTGACTGCGGCAGTGGAGCTACGGAGAATGGTCCTAGGTGTCAGGAAATGCAGAGCCTGATTGGAGGTAGAAAATATTTAA----AACCAGCAGTACAAGAG-----A-TGCAAAGGCCTGATTAATAATA-AAATAATAATTCCTATAGAAGGCTCAGAAAAAGTAAATAAAC--ATTCTATTTAACTTAGTTGATAC---TAGTAAGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 982356 205 + 1565135 GTCAGCATTTGTTGGCTGCGGCAGTGGAGCTACGGAGAATGGTCCTAGGTGTCAGGAAATGCAGAGCCTGGTCGGAGGTAGAAAATATTTAA----AACCAGCAGTACAAGAG-----A-TGCAAAGGCCTGATTAATAATA-AAATAATAATTCCTATAGAAGGCTCAGAAAATTTAAATAAAC--ATTCTATTTAACTTAGTTGATAC---TAGTAAGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3342596 205 - 13651311 CTCAGCATTTGTTGGCTGTGGCAGTGGAGCTACAGAGAATGGTCCTAGGTGTCAGGAAATGCAGAGCCTAATCGGAGGTAGAAAATATTTAG----AACCGGCAGTACAAGAG-----A-TGCAAAGGCCTGATTAATAATA-AAAGAATAATTCCTATAGAAGGCTCAGAAAATTTAAATAAAC--ATTCTATTTAACTTGATCGATAC---TAGTAAGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3435184 207 - 108792865 GTCAGCATTCGTTGGCTGCGGCAGT-GAGCTACAGAGAATGGCCCTGGTTGTCAGGGAACGCAGAGCCAGATTGGAGC-AGAAAGTCTTTAA----AACCGGCAGCACGAGAGATGCAA-TGCAAAGGCCTGATTAATGGTA-AAATAGTAATTCCTGTAGAA-TCTCGGGAGGTTTCAATACAG--ATTCTGTTTAAATTGCTTGATAC---TAGTAGGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3089618 204 - 7082604 GTCAGCATTCGTTGGCTGCGGCAGT-GAGCCACAGAGAATGGTCCTGGTTGTCAGGAAACCCAGAGCCAGATTGGAGCTGGAAAGTCTTTAA----AACCAGTGGCACAAGAG-----A-TGCAAAGGCCTGattaataata-aaataataattCCTATAGAAGTCTCAGGAAGTTTAAATACAC--ATTCTATTTAACTTGGGTGATAC---TAGTAGGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 575319 203 + 5243153 -TCAGCATTCGTTGGCTGTGGCAGT-GAGCTACAGAGGATGGTCCTGGTTGTCAGGAAACGCAGAGCCAGATTGGAGCTAGAAAGTCTTTAA----AACCAGCAACACAGGAG-----A-TGCAAAGACCTGATTAATAATA-AAATAATAATTCCTATAGAAGTCTCAGGAAGTTTCAATACAC--ATTCTATTTAACTTGGTCGATAC---TAGTAGGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1908544 204 - 1938448 GTCAGCATTCATTGGCTGCGGGAGT-GAGCTACAGAGACTGGTCCTGGTTGTCAGGAAACGCAGAGCCAGATTGGAGCTAGAAAGTCTTTAA----AACCAGCGGCACAAGAG-----A-TGCAAAGGCCTGATTAATAATA-AAATAATAATTCTTATAGAAGTCTCAGGAAGTTTAAATACAC--ATTCTGTTTAACTTGGTTGATAC---TAGTAGGT i aotNan1.NW_018507213v1 C 0 M 3510 s micMur3.chr8 2630199 197 - 159902609 GTCAGCATTTGTTGGATGCAGCCGTGGAGCTACAAAGAATGGTCCTGATTGTCAGGAAACTTAGAGCCTAACCGGAGGTAGAAAATACAAAA----TAATAACCGTACAAGAG-----AGTACAACAACCTGCTTAATAATAAAGATAATAATTGCTATGGAAGTTTCAAAAAATTTAAGTCAAC--ATTCTTTTTAACTTGGTTGAT------------- i micMur3.chr8 I 448 C 0 s proCoq1.NW_012151163v1 943173 206 + 1238772 GTCGGCATCTGTTGGATGCCACAGTGGAGCTACAaagagtggtcctggttgtcaggaaactcagagcctaactggaggtagaaaatgcagaa----t-ataacagtacaagag-----agtataaagacttgcttaatgataaagacaataattgctatagaagttTCAAAACATTTAAATCAGC--ATTCTTTTTAACTCGGTTGATAC---TGGCAGGT i proCoq1.NW_012151163v1 I 458 C 0 s otoGar3.GL873658 2517637 188 + 5252280 GTCAATATTTGTTGGATTCCACA-TGGAGCTGCAAAGAATGGTCCTGGTT------------AGAGCCTAACTGAAGGTAGGACGTGTAACA----TAGTGACAGCACCTGGG-----TGGACAGAGGCCTGACCAAT-----AGAGAACAGTTGCTGTAGAAGTCACAGAAC-TTTACATCAAC--GTTCTTTTTAACTTGGTTGATGT---TAGTAGGT i otoGar3.GL873658 I 1 C 0 s canFam3.chr17 2023201 198 + 64289059 GCCAGCATCTGTTGGATGTAACAGTGGAATAACAAAGGAAAGTTCTGGTTGTCAGGAAACATGGAGTCT-ATGGCAGGAAGAAAATAT---------AGTAATAGAGCAAGAG-----AATACAGAGGCCTGATAGGTAATAGAGATCATGGTGGCCATAGAATGTTCAAAAAA-TTACATCAGC--ATCTC-----ACTTGGTTAACACGAGCAGTAGGT i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 544152 189 + 2232271 ATCAGCATTTGTTGGATGAAGCAGTGGAGCTACTGAGATTAGTCCTTGTTGTTAGGAAACTTAAAGCCTAATTGCAGGAAGAAAATATAAAATAACAACTAACAGTGCAATAG-----AGTATAAAGCCCTGAT---------A------AATCGCTATAG---TTTCAAAAA--TTAAATCAACCAATT----TTAACTTGGTTTATAT---TAGTGGGT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91408437 1652 - 120129022 I a score=512273.000000 s hg38.chr2_KI270769v1_alt 35939 42 + 120616 AAATAGATGAACTAAAAAGGCTAGAAGTAAAA-ACAAATCTTT s panTro5.chr2A 3488224 42 + 111504155 AAATAGATGAACTAAAAAGGCTAGAAGTAAAA-ACAAATCTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3358429 42 + 114371477 AAATAGATGAACTAAAAAGGCTAGAAGTAAAA-ACAAATCTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 234065 42 + 637652 AAATAGATGAACTAAAAAGGCTAGAAGTAAAA-ACAAATCTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3029480 41 + 81552678 AAATAGATGCACTAAAAAGGGTAGAAGTAAAA-AC-AATCTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3291919 42 + 108979918 AAATAGATGAACTAAAAAGGCTAGAAGTAAAA-ACAAATCTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5004689 42 - 111193037 AAATAGATGAACTAAAAAGGCTAGAAGTAAAA-ACAAATCTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3399465 42 + 3644372 AAATAGATGAACTAAAAAGGCTAGAAGTAAAA-ACAAATCTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3354103 42 - 10304083 AAATAGATGAACTAAAAAGGCTAGAAGTAAAA-GCAAATCTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3436988 42 - 107702431 AAATACATGAACTAAAAAGGCTAGAAGTAAAA-ACACATCTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 982561 42 + 1565135 AAATAGATGAACTAAAAAGGCTAGAAGTAAAA-ACAAATCTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3342801 42 - 13651311 AAATAGATGAACTAAAAAGGCTAGAAGTAAAA-ACAAATCTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3435391 41 - 108792865 AAGTAGATGAACT-CAAAGGCTGGAAGTAAAA-ACAAATCTTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3089822 42 - 7082604 AAGTAGATGAACTAAAAAGGCTGGAAGTAAAA-GCAAATCTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 575522 42 + 5243153 AAGCAGATGAACTAAAAAGGCTGGAAGGAAAA-ACAAATCTTT i cebCap1.NW_016107454v1 C 0 C 0 s micMur3.chr8 2630396 33 - 159902609 ---------AACTAAGAAGGCCAAAAGTAAAA-ACACATCTTT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 943379 42 + 1238772 AAAGAGATGAGCTAAGAAGGCCGGAAGTAAAG-ACACATCTTT i proCoq1.NW_012151163v1 C 0 I 205 s otoGar3.GL873658 2517825 42 + 5252280 AAAGAGATGAACCTTGAAGGCTAGAAATAAAA-GCAAATCTTT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2023399 41 + 64289059 AAACACATGACCCGAGAAGACTAGAAGTAAAACACAGTTCT-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 544341 27 + 2232271 AAGTAGATGAACTAAGAA---------------GTAAATTTT- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91408437 1652 - 120129022 I e aotNan1.NW_018507213v1 1908748 3510 - 1938448 M a score=78152.000000 s hg38.chr2_KI270769v1_alt 35981 20 + 120616 GAACTTCTTTGTGTGTT---GTT- s panTro5.chr2A 3488266 20 + 111504155 GAACTTCTTTGTGTGTT---GTT- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3358471 20 + 114371477 GAACTTCTTTGTGTGTT---GTT- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 234107 19 + 637652 GAACTTCTTTGTGTGTT---G-T- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3029521 19 + 81552678 CAGCTTCTTTGTGTGTT---G-T- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3291961 16 + 108979918 CA---TCTTTGTGTGTT---G-T- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5004731 16 - 111193037 CA---TCTTTGTGTGTT---G-T- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3399507 16 + 3644372 CA---TCTTTGTGTGTT---G-T- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3354145 19 - 10304083 CATCTTCTTTGTGTGTT---G-T- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437030 19 - 107702431 CATCTTCTTTGTGTGTT---G-T- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 982603 19 + 1565135 CATCTTCTTTGTGTGTT---G-T- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3342843 19 - 13651311 CATCTTCTTTGTGTGTT---G-T- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3435432 16 - 108792865 CCACTTCTTTGTGTG-------T- i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3089864 16 - 7082604 CCACTTCTTTGTGTG-------T- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 575564 16 + 5243153 CCACTTCTTGGTGTG-------T- i cebCap1.NW_016107454v1 C 0 C 0 s micMur3.chr8 2630429 20 - 159902609 CAGCTTCTTTTTATGTTGTT---- i micMur3.chr8 C 0 I 256 s otoGar3.GL873658 2517867 17 + 5252280 CAGCTTCTTTTTGTGTT------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2023440 17 + 64289059 CAGCTTCTTTTTGTGTT------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 544368 20 + 2232271 AAACTTTTTTTAATGTT---G-TT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 943421 205 + 1238772 I e aotNan1.NW_018507213v1 1908748 3510 - 1938448 M a score=596607.000000 s hg38.chr2_KI270769v1_alt 36001 70 + 120616 TTTTTGGTTAAAACTCAGCT-CTG--TTTCTTTGGAG-----------------------------------------------------------------------GGG-CATAGGAACGAATGTAGACGCCGGCTTTCTTTA s panTro5.chr2A 3488286 70 + 111504155 TTTTTGGTTAAAACTCAGCT-CTG--TTTCTTTGGAG-----------------------------------------------------------------------GGG-CATAGGAACGAATGTAGACGCCGGCTTTCTTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3358491 70 + 114371477 TTTTTGGTTAAAACTCAGCT-CTG--TTTCTTTGGAG-----------------------------------------------------------------------GGG-CATAGGAACGAATGTAGACGCCGGCTTTCTTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 234126 70 + 637652 TTTTTGGTTAAAACTCAGCT-CTG--TTTCTTTGGAG-----------------------------------------------------------------------GGG-CATAGGAACGAATGTAGACGCCGGCTTTCTTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3029540 70 + 81552678 TTTTTGCTTAAACCTCAGCT-CTG--TTTCTTCGGAG-----------------------------------------------------------------------GGG-CATAGGAACGAATGCAGACGCCGGCTTTCTTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3291977 70 + 108979918 TTTTTGCTTAAAACTCAGCT-CTG--TTTCTTTGGAG-----------------------------------------------------------------------GGG-CATAGGAACGAATGCAGACGCCGGCTTTCTTTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5004747 70 - 111193037 TTTTTGCTTAAAACTCAGCT-CTG--TTTCTTTGGAG-----------------------------------------------------------------------GGG-CATAGGAACGAATGCAGACGCCGGCTTTCTTTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3399523 70 + 3644372 TTTTTGCTTAAAACTCAGCT-CTG--TTTCTTTGGAG-----------------------------------------------------------------------GGG-CATAGGAACGAATGCAGACGCCGGCTTTCTTTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3354164 70 - 10304083 TTTTTGCTTAAAACTCAGCT-CTG--TTTCTTTGGAG-----------------------------------------------------------------------GGG-CATAGGAACGAATGCAGACGCCGGCTTTCTTTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437049 70 - 107702431 TTTTTGCTTAAAACTCAGCT-CTG--TTTCTTTGGAG-----------------------------------------------------------------------GGG-CATAGGAACAAATGCAGACGCCGGCTTTCTTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 982622 70 + 1565135 TTTTTACTTAAAACTCAGCT-CTG--TTTCTTTGGAG-----------------------------------------------------------------------GGG-CATAGGAACGAATGCAGACGCCGGCTTTCTTTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3342862 70 - 13651311 TTTTTGCTTAAAACTCAGCT-CTG--TTTCTTTGGAG-----------------------------------------------------------------------GGG-CATAGGAACGAATGCAGATGCCAGCTTTCTTTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3435449 69 - 108792865 TTTTTCCTTAAAACTCCGCT-GTG--T------------------------------------------------------------------------TTCTGGGGAGGG-TACAGGAAGGGATGCAGACCCCGGCTTTCTTTA i calJac3.chr14 I 1 I 185 s saiBol1.JH378218 3089880 125 - 7082604 TTTTTCCTTAAAACTCCACT-GTG--TTTCTTTGGAGGGGTACAGGAGTGCCAGCTTTCTTTATTCTCAAAACTC----------------CGCCCTGCTTCTGGGGAGGG-TGCAGAAAGGAATGCAGACACCGGCTTTCTTTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 575580 125 + 5243153 TTTTTCCTTAAAACTCCACT-CTG--TTTCTTTGGAGGGGTACAGGAGCGCCAGCTT----------------TCTCTATTCTCAGAACTCCACCCTGCCTCTGGGGAGGG-TACAGGAAGGAATGCAGACACCAGCTTTCTTTA i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2517884 69 + 5252280 TTTTTCCTTAAAACTTGGAT-CCGGTTTCCTTGGAAG-----------------------------------------------------------------------GGA-TCTAGGAAAGG--GCAGA-GTCAGCGTCCTCTC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2023457 63 + 64289059 --TTTCCTTACAACGCAGATCCTG--TTTCTGTGGAG-----------------------------------------------------------------------GGGACACAGAGAAGGA-------GCAAGCTTTCTGTA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 544388 62 + 2232271 -TTTCCCTTAAAATTCAGATTCTG--TTTCTTTTGAG-----------------------------------------------------------------------GGA---------AGGATGGAAGAGTCAGCTTTCTTTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2630449 256 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 943421 205 + 1238772 I e aotNan1.NW_018507213v1 1908748 3510 - 1938448 M a score=1154929.000000 s hg38.chr2_KI270769v1_alt 36071 124 + 120616 TTCCCCATGCTCTCTCCTTTATCATCTTTACCTTCCTCCAAGTAGGACGGGTGGGAATTGGTCCATATTACTCTGAGTTATCCCAGAATTGATGGA-GATTTTTATCATTT-TTAGTATAAAGTGT- s panTro5.chr2A 3488356 124 + 111504155 TTCCCCATGCTCTCTCCTTTATCATCTTTACCTTCCTGCAAGTAGGACGGGCGGGAATTGGTCCATATTACTCTGAGTTATCCCAGAATTGATGGA-GATTTTTATCATTT-TTAGTATAAAGTGT- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3358561 124 + 114371477 TTCCCCATGCTCTCTCCTTTATCATCTTTACCTTCCTGCAAGTAGGACGGGCGGGAATTGGTCCATATTACTCTGAGTTATCCCAGAATTGATGGA-GATTTTTATCATTT-TTAGTATAAAGTGT- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 234196 124 + 637652 TTCCCCATGCTCTCTCCTTTATCATCTTTACCTTCCTCCAAGTAGGACGGGCGGGAATTGGTCCGTATTACTCTGAGTTATCCCGGAATTGATGGA-GATTTTTATCATTT-TTAGTATAGAGTGT- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3029610 124 + 81552678 TTCCCCATGCTCTCTCCTTTATCATCTTTACCTTCCTCCAAGTAGGACGGGTGGGAATTGGTCCATATTACTCCGAGTTGTCCCGGAATTGATGGA-GATTTGTATCATTT-TTAGTATAAAGTGT- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3292047 124 + 108979918 TTCCCCATGCTCTCTCCTTTATCATCTTTACCTTCCTCCAGGTAGGACGGGAGGGAATTGGTCCATATTACTCTGAGTTATCCCAGAATTGATGGA-GATTTTTATCATTT-TTAGTATAAAATAT- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5004817 124 - 111193037 TTCCCCATGCTCTCTCCTTTATCATCTTTACCTTCCTCCAGGTAGGACGGGAGGGAATTGGTCCATATTACTCTGAGTTATCCCAGAATTGATGGA-GATTTTTATCATTT-TTAGTATAAAATAT- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3399593 124 + 3644372 TTCCCCATGCTCTCTCCTTTATCATCTTTACCTTCCTCCAGGTAGGACGGGAGGGAATTGGTCCATATTACTCTGAGTTATCCCAGAATTGATGGA-GATTTTTATCATTT-TTAGTATAAAATAT- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3354234 124 - 10304083 TTCCCCATGCTCTCTCCTTTATCATCTTTACCTTCCTCCAGGTAGGATGGGAGGGAATTGGTCCATATTACTCTGAGTTATCCCAGAATTGATGGA-GATTTTTATAATTT-TTAGTATAAAATAT- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437119 124 - 107702431 TTCCCCATGCTCTCTCCTTTATCATCTTTACCTTCCTCCAGGTAGGACGGGAGGGAATTGGTCCATATTACTCTGAGTTATCCCAGAATTGATGGA-GATTTTTATCATTT-TTAGTATAAAATAT- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 982692 124 + 1565135 TTCCCCATGCTCTCTCTTTTATCATCTTTACCTTCCTCCAGGTAGGACAGGAGGGAATTGGTCCATATTACTCTGAGTTATCCCAGAATTGATGGA-GATTTTTATCGTTT-TTAGTATAAAATAT- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3342932 124 - 13651311 TTCCCCATGCTCTCTCCTTTGTCATCTTTACCTTCCCCCAGGCAGGACGGGCGGGAATTGGTCCATATTACTCTGAGTTATGCCAGAATTGATGGA-GATTCTTATCATTT-TTAGTATAAAGTCT- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3435703 116 - 108792865 TTCTCTGTGCTCTGACCTTCATCATCTTTACCTTTCTCCAAGTA--------GGGCATTGGCCCGTATTACTCTGAGTTATCCCGGAATTGATAGA-GATTTTTATCATTTCTTAGTATAAAGTG-- i calJac3.chr14 I 185 C 0 s saiBol1.JH378218 3090005 116 - 7082604 TTCTCTGGGCTCTGTCCTTTATCATCCTTACCTTTCTCCAAGTA--------GGGAATTGGTCCGTATTACTCTGAGTTATCCCGGAATTGATAGA-GATTTTTATCTTTTCTTAGTATAAAGTG-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 575705 116 + 5243153 TTCTCTGTGCTCTGTCCTTTATCATCTTTACCTCTCTCCAAGTA--------GGGAATTGGTCCGTATTACTCTGAGTTATCCCGGAAGTGATAGA-GATTTTTATCATTTCTTAGTATAAAGTG-- i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2517953 113 + 5252280 TCCCCCAAGCTTTGTCC-TCATCAGCTCAATTTCACAGCA--TGGGATTGGCAGGAACTAGGCTGTA-TATGCTGAGTTATCCCTGGATGGAAGAG-GATCTTTACCTCTT-TGGATGC-------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2023520 110 + 64289059 TCCCTGGAGCTTCCTCCTTGATGGTGTTTACCCTCC----AACAGGAGTGAGAAGAGCCAGACCACATGAC-CTGGGCTTGCCCAGACTCGAGGGA-GGTTT----------CTAGCACAGGGTAC- i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 544450 126 + 2232271 TTCTCAGTGTTTTATCCTTTATCATCTTTAACTTTCACAAGATAGGGCTAGTAGGAATTAGTCTGTATTACCCTGAGCTTTCCCAGAATTGAAAGAGGATTTTTATCACGT-TTAGCATGGGGTGCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2630449 256 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 943421 205 + 1238772 I e aotNan1.NW_018507213v1 1908748 3510 - 1938448 M a score=1003336.000000 s hg38.chr2_KI270769v1_alt 36195 81 + 120616 TTTTTGACCTTTAGTCTCACTGGTATTAAAA---T--TGTTTCTTCCTTCTGACTAAGGGAATTTGCCCCTTG-----TGGAAAAGAAAAA- s panTro5.chr2A 3488480 81 + 111504155 TTTTTGACCTTTAGTCTCACTGGTATTAAAA---T--TGTTTCTTCCTTCTGACTAAGGGAATTTGCCCCTTG-----TGGAAAAGAAAAA- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3358685 77 + 114371477 TTTTTGACCTTTAGTCTCACTGGTATTAAAA---T--TGTTTCTTCCTT----CTAAGGGAATTTGCCCCTTG-----TGGAAAAGAAAAA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 234320 81 + 637652 TTTTTGACCTTTAGTCTCACTGGTATTAAAA---T--TGTTTCTTCCTTCTGACTAAGGGAATTTGCCCCTTG-----TGGAAAAGAAAAA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3029734 81 + 81552678 TTTTTGACCTTTAGTCTCACTGGTATTAAAA---T--TGTTTCTTCCTTCTGACTAAGGGAATTTGCCCCTTG-----TGGAAAAGAAAAA- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3292171 81 + 108979918 TTTTTGACCTTTAGTCTCACTGGTATTAAAA---T--TGTTTATTCCTTCTGACTAAGGGAATTTGCCCCTTG-----TAGAAAAGAAAAA- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5004941 81 - 111193037 TTTTTGACCTTTAGTCTCACTGGTATTAAAA---T--TGTTTATTCCTTCTGACTAAGGGAATTTGCCCCTTG-----TAGAAAAGAAAAA- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3399717 81 + 3644372 TTTTTGACCTTTAGTCTCACTGGTATTAAAA---T--TGTTTATTCCTTCTGACTAAGGGAATTTGCCCCTTG-----TAGAGAAGAAAAA- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3354358 81 - 10304083 TTTTTGACCTTTAGTCTCACTGGTATTAAAA---T--TATTTATTCCTTCTGACTAAGGGAATTTGCCCCTTG-----TAGAAAAGAAAAA- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437243 80 - 107702431 TTTTTGACCTTTAGTCTCACTGGTATTAAAA---T--TGTTTATTCC-TCTGACTAAGGGAATTTGCCCCTTG-----TAGAAAAGAAAAA- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 982816 81 + 1565135 TTTTTGACCTTTAGTCTCACTGGTATTAAAA---T--TATTTATTCCTTCTGACTAAGGGAATTTGCCCCTTG-----TAGAAAAGAAAAA- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343056 81 - 13651311 TTTTTGACCTTTAGTCTCACTGGTATTAAAA---T--AGTTTATTCCTTCTGACTAAGGGAATTTGCCCCTTG-----TAGAAAAGAAAAA- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3435819 80 - 108792865 TTTTTGGCCTTTAGTCTTACTGGTATTAAAA---T--TGTTTCTTCC-TCTGACTAAGGGAATTTGCCCCTTG-----TAGAAAAGGAAAA- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3090121 80 - 7082604 TTTTTGGCCTTTAGTCTTACTAGTATTAAAA---T--TGTTTCTTCC-TCTGACTAAGGGAATTTGCCCCATG-----TAGAAAAGAAAAA- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 575821 80 + 5243153 TTTTTGGCCTTTAGTCTTACTGGTATTAAAA---T--TGTTTCTTCC-TCTGACCAAGGGAATTTGCCCCTTG-----TAGAAAAGAAAAA- i cebCap1.NW_016107454v1 C 0 C 0 s proCoq1.NW_012151163v1 943626 81 + 1238772 TTTTTGACCTTTAGCCTCACTAGTATCAAAA---A--TGTTTCTTCCTTATGATCAAAGGAATTTACCCCTTG-----TAGAAAAGAAAAA- i proCoq1.NW_012151163v1 I 205 I 307 s otoGar3.GL873658 2518066 85 + 5252280 TTTTTGACCTTTAGCCTCATTGGTATTAGAA---A--CATTTCTTCCTTTTATCTAAGGAAATTTACCCCTTGTATTATAGAAAAGAAAA-- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2023631 80 + 64289059 CTTGTACCTTTTAGCCTCACTAGTATTATTAGTCC--TGTTTCTTCCTT----CTAAGAGAACTTACCCCTCA-----TAGAAGAGAAACA- i canFam3.chr17 I 1 I 1 s dasNov3.JH580157 544576 84 + 2232271 TTTTTGACCTTTTGCTTCATTAGAATTAAAA---TTCTGTTTCTTTCATCTGACTAAAGGAACTTAACTCTAG-----TAGAAAAGAAAATA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2630449 256 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e aotNan1.NW_018507213v1 1908748 3510 - 1938448 M a score=113961.000000 s hg38.chr2_KI270769v1_alt 36276 15 + 120616 A-TGGGAAGGGTAACT s panTro5.chr2A 3488561 15 + 111504155 A-TGGGAAGGGTAACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3358762 15 + 114371477 A-TGGGAAGGGTAACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 234401 15 + 637652 A-TGGGAAGGGTAACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3029815 15 + 81552678 T-TGGAAAGGGTAACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3292252 16 + 108979918 AATGGAAAGGGTAACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005022 16 - 111193037 AATGGAAAGGGTAACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3399798 16 + 3644372 AATGGAAAGGGTAACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3354439 16 - 10304083 AATGGAAAGGGTAACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437323 16 - 107702431 AATGGAAAGGGTAACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 982897 16 + 1565135 AATGGAAAGGGTAACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343137 16 - 13651311 ACTGGAAAGGGTAACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3435899 15 - 108792865 A-TGGAAAGGGTAAGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3090201 15 - 7082604 A-TGGAAAGGGTAAGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 575901 15 + 5243153 A-TGGAAAGGGTAAGT i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2518151 14 + 5252280 -ATGTTAAAGGCAAT- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2023712 15 + 64289059 -ATGGAAAAGATAGGT i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 544660 15 + 2232271 -GAGAGAAAGATAGGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2630449 256 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 943707 307 + 1238772 I e aotNan1.NW_018507213v1 1908748 3510 - 1938448 M a score=470405.000000 s hg38.chr2_KI270769v1_alt 36291 41 + 120616 TTTAATAACTAAAATAGGGCATAAATCAAAGAGATTGTCTT s panTro5.chr2A 3488576 41 + 111504155 TTTAATAACTAAAATAGGGCATAAATCAAAGAGATTGTCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3358777 41 + 114371477 TTTAATAACTAAAATAGGGCATAAATCAAAGAGATTGTCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 234416 41 + 637652 TTTAATAACTAAAATAGGGCATAAATCAAAGAGATTGTCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3029830 41 + 81552678 TTTAATAACTAAAATAGGGCATAAATCAAAGAGATTGTTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3292268 41 + 108979918 TCTAATAACTAAGATAGGGCATAAATCAGAGAGATCGTCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005038 41 - 111193037 TCTAATAACTAAGATAGGGCATAAATCAGAGAGATCGTCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3399814 41 + 3644372 TCTAATAACTAAGATAGGGCATAAATCAGAGAGATCGTCTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3354455 41 - 10304083 TCTAATAACTAAGATAGGGCATAAATCAGAGAGATCGTCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437339 41 - 107702431 TCTAATAACTACGATAGGGCATAAATCAGAGCGAGTGTCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 982913 41 + 1565135 TCTAATAACTAAGATAGGGCATAAATCAGAGAGATCGTCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343153 41 - 13651311 TCTGATAACTAAGATAGGGCATAAATCAGAAAGATTGTCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3435914 41 - 108792865 TTTAGTAGCTAACATAGGGCATACATCAAAGACACTGTCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3090216 41 - 7082604 TTTAGTACCTAACATAGGGCATACATCAGAGAGATTGTCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 575916 41 + 5243153 TTTAGCACCTAACATAGGGCATACGTCAGAGAGATTGTCTT i cebCap1.NW_016107454v1 C 0 C 0 s micMur3.chr8 2630705 41 - 159902609 TTTAATACCTAAAACAGCGCATAAACCAAAGAGATTGCCTT i micMur3.chr8 I 256 C 0 s otoGar3.GL873658 2518165 41 + 5252280 TTCAATACCTAAAACGGTGCATAAACTAAAGAGATCGTCTT i otoGar3.GL873658 C 0 M 2626 s canFam3.chr17 2023727 41 + 64289059 TTTAATACCCAAAGCCGGGCAGAAATCAGACCAGTTGGCTT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 544675 41 + 2232271 TTTAATATCTATAGCAGGACAAAAATCAAAGAAACTGGCTT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 943707 307 + 1238772 I e aotNan1.NW_018507213v1 1908748 3510 - 1938448 M a score=13073.000000 s hg38.chr2_KI270769v1_alt 36332 1 + 120616 G s panTro5.chr2A 3488617 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3358818 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 234457 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3029871 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3292309 1 + 108979918 G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005079 1 - 111193037 G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3399855 1 + 3644372 G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3354496 1 - 10304083 G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437380 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 982954 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343194 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3435955 1 - 108792865 A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3090257 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 575957 1 + 5243153 G i cebCap1.NW_016107454v1 C 0 C 0 s micMur3.chr8 2630746 1 - 159902609 G i micMur3.chr8 C 0 I 729 s canFam3.chr17 2023768 1 + 64289059 G i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 544716 1 + 2232271 G i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 943707 307 + 1238772 I e otoGar3.GL873658 2518206 2626 + 5252280 M e aotNan1.NW_018507213v1 1908748 3510 - 1938448 M a score=2275361.000000 s hg38.chr2_KI270769v1_alt 36333 261 + 120616 ATGGAGCTGGCTTGATTTCATGGAAGTGAACCAACCAAGCTAG-GTAGCCACAGAGTCAAGAAGGACCAGCAACACCACTATCACTCTCGGACGTAGGACTCTGTGTCATCCAGGGACGTAGACGCCAGTCCTTAATGTGTGACACTTCCTGCCCACCCACTGGCCTGTCCAGTCCTGCTGGCCTTCCACAT----GACCAGGAGGAAC--AGACCAAAGCCAGGA---CCGCTTGAGGGTGCGTGTTCAG-----G-----AGCTCTGTC--TGCCGTGGCC-- s panTro5.chr2A 3488618 261 + 111504155 ATGGAGCTGGCTTGATTTCATGGAAGTGAACCAACCAAGCTAG-GTAGCCACAGAGTCAAGAAGGACCAGCAACACCACTATCACTCTCGGACGTAGGACTCTGTGTCATCCAGGGACGTAGACGCCAGTCCTTAATGTGTAACACTTCCTGCCCACCCACTGGCCTGTCCAGTCCTGCTGGCCTTCCACAT----GACCAGGAGGAAC--AGACCAAAGCCAGGA---CCGCTTGAGGGTTCGTGTTCAG-----G-----AGCTCTGTC--TGCTGTGGCC-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3358819 261 + 114371477 ATGGAGCTGGCTTGATTTCATGGAAGTGAACCAACCAAGCTAG-GTAGCCACAGAGTCAAGAAGGACCAGCAACACCACTATCACTCTCGGACGTAGGACTCTGTGTCATCCAGGGACGTAGACGCCAGTCCTTAATGTGTAACACTTCCTGCCCAACCACTGGCCTGTCCAGTCCTGCTGGCCTTCCACAT----GACCAGGAGGAAC--AGACCAAAGCCAGGA---CCGCTTGAGGGTGCGTGTTCAG-----G-----AGCTCTGTC--TGCCGTGGCC-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 234458 261 + 637652 ATGGGGCTGGCTTGATTTCATGGAAGTGAACCAACCAAGCTAG-GTAGCCACAGAGTCAAGAAGGACCAGCAACACCACTATCACTCTCAGACGTAGGACTCTGTGTCATCCAGGGACGTAGACACCAGTCCTTAGTGTGTGACACTTCCTGCCCACCCACTGGCCTGTCCAGTCCTGCTGGCCTTCCACAT----GACCAGGAGGAAC--AGACCAAAGCCAGGA---CCGCTTGAGGGTGCATGTTCAG-----G-----AGCTCTGTC--TGCCGTGGCC-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3029872 261 + 81552678 ATGGGGCTGGCTTGATTTCATGGAAGTGAACCAACCAAGCTAG-GTAGCCACAGAGTCAGGAAGGACCAGCAACACCACTGTCACTCTCGGACGTAGGACTCTGTGTCATCCAGGGATGTAGATGGCAGTCCTTAATGTGTGACACTTCCTGCCCACCCACTGGCCTGTCCAGTCCTGCCAGCCTTCCACAT----GAGCAGGAGGAAC--AGACCAAAGCCAGGA---CCGCTTGAGGGTGCGTGTTCAG-----G-----AGCTTTGTC--TGCCGTGGCC-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3292310 261 + 108979918 ATGGGGCTGGCTTGATTTCATGGAAGTGAACCAGCCAATCTAG-GTAGCCACAGAGTGAGGAAGGACCAGCAACAACACTGTCGCTCTCGGACATAGGACTCCGTGTCATCCAGGGACGTAGATGCCAGTCCTTAATGTGCGACACTTCCTGCCCACCCACTGGCCTGTCCAGTCCTGCTAGCCTTCCACGT----GACCAGGAGGAAC--AGACCAAAGCCAGGA---CCGCTTGATGGTGCGTGTTCAG-----G-----AGCTCTGTC--TGCCGTGGCG-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005080 251 - 111193037 ATGGGGCTGGCTTGATTTCATGGAAGTGAACCAGCCAATCTAG-GTAGCCACAGAGTGAGGAAGGACCAGCAACAACACTGTTGCTCTCGGACATAGGACTCCGTGTCATCCAGGGACGTAGATGCCAGTCCTTAATGTGCGACACTTCCTGCCCACCCACTGG----------CCTGCTAGCCTTCCACGT----GACCAGGAGGAAC--AGACCAAAGCCAGGA---CCGCTTGATGGTGCATGTTCAG-----G-----AGCTCTGTC--TGCCGTGGCG-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3399856 261 + 3644372 ATGGGGCTGGCTTGATTTCATGGAAGTGAACCAGCCAATCTAG-GTAGCCACAGAGTGAGGAAGGACCAGCAACAACACTGTCGCTCTCGGACATAGGACTCCGTGTCATCCAGGGACGTAGATGCCAGTCCTTAATGTGCGACACTTCCTGCCCACCCACTGGCCTGTCCAGTCCTGCTAGCCTTCCACGT----GACCAGGAGGAAC--AGACCAAAGCCAGGA---CCGCTTGATGGTGCGTGTTCAG-----G-----AGCTCTGTC--TGCCGTGGCG-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3354497 261 - 10304083 ATGGGGCTGGCTTGATTTCATGGAAGTGAACCAGCCAATCTAG-GTAGCCACAGAGTGAGGAAGGACCAGCAACAACACTGTCGCTCTCGGACATAGGACTCCGTGTCATCCAGGGACGTAGATGCCAGTCCTTAATGTGCGACACTTCCTGCCCACCCACTGGCCTGTCCAGTCCTGCTAGCCTTCCACAT----GACCAGGAGGAAC--AGACCAAAGCCAGGA---CCGCTTGATGGTGCGTGTTCAG-----G-----AGGTCTGTC--TGCCGTGGCG-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437381 261 - 107702431 ATGGGGCTGGCTTGATTTCATGGAAGTGAACCAGCCAGTCCAG-GTAGCCGCGGAGTGAGGAGGGACCAGCAACAACACTGTCGCTCTCGGACGTAGGACTCCGTGTCATCCAGGGACGTAGATGCCAGTCCTTAATGTGCGACACTGCCTGCCCACCCACTGGCCTGTCCAGTCCTGCTAGCCTTCCACAT----GACCAGGAGGAAC--AGACCAAAGCCAGGA---CCGCTTGATGGTGCGTGTTCAG-----G-----AGCTCTGTC--TGCCGTGGCG-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 982955 260 + 1565135 ATGGGGCTGGCTGGATTTCATGGAAGTGAACCAGCCAATCTAG-GTAGCCACAGAGTGAGGAAGGACCAGCAACAACACTGTCGCTCTCGGACATAGGACTCCGTGTCATCCAGGGACGTAGATGCCAGTCCTTAATGTGCGACACTTCCTGCCCACCCACTGGCCTGTCCAGTCCTGCTAGCCTTCCACAT-----ACCAGGAGGAAC--AGACCAAAGCCAGGA---CCGCTTGATGGTGCGTGTTCAG-----G-----AGCTCTGTC--TGCCGTGGCG-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343195 261 - 13651311 ACGGGGCTGGCTTGATTTCATGGAAGTGAACCAGCCAATCTAG-GTAGCCACAGAGTGAGGAAGGACCAGCAACACCAGTGTCGCTCTCAGACATAGGACTCTGTGTCATCCAGGGACGCAGACGCCAGTCCTTAATGTGCGACACTTCCTGCCCACCCACTGGCCTGTCCAGTCCTGCTAGCCTTCCACAT----GACCAGGAGGAAC--AGACCAAAGCCAGGA---CCGCTTGATGGTGCGTGTTCAG-----G-----AGCTCTGTC--TGCCGTGGCG-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3435956 261 - 108792865 TTGGGGCTGGCTTGATTTCATGGAAGTGAACTGACCAAGCGAG-GTAGCCACAGAGTCGTGAAGGACCAGTAACACTGCTGTCACTCTCGGCCTTAGGACTCTGTGTCATTCAGGGACACAGACTTCAGACCTTAATGTGTGACGCTTCCTTCCCACCCACCGGCCTGTCCAGTCCCGCTAGCCTTCCACAT----GACCAAGAGGAAC--AGGCCGAAGCCAGGG---CCACGTGAAGGTGCATGTTCAG-----G-----AGCCCTGTC--TGCCGTGGCG-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3090258 258 - 7082604 TTGGGGCTGGCTTGATTTCATGGAAGTGAACTGACCAAGCGAA-GGAGCCGCAGAGTCAGGAAGGACCAGTAACACTGCTGTCATTCCCGGCCTTAGGACTCCGTGTCATGCAGGGACGCAGACTCTAGTCCTTAATGTGTGACGCTTCCTGCCTACCCACCGGGCTGTCCAGTCCCGCTAGCCTTCCACAT----GACCAGGAGGAAC--AGGCCGAAG---AGG---CCGCGTGAGGGTGCATGTTCAG-----G-----AGCCCTGTC--TGCTGTGGCG-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 575958 257 + 5243153 TTGGGGCTGGCTTGATTTCATGGAAGTGAACTGACCAAGCGAG-GGAGCCACAGAGTCAGGAAGGACCAGTAACACTGCTGTCACTCCTGGCCTTAGGACTCCGTGTCATCCAGGGACACAGACTCCAGGCCTTAATGTGTGATGCTTCCTGCCCACCCACCGGCCTGTCCAGTCCCGCTAGCCTTCCAC------GACCAGGAGGAAC--AGGCGAAAGCCAGGG---CCGTATGAGCGTGCGTG-TCAG-----G-----AGCCCTGTC--TGCCATGGC--- i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2023769 202 + 64289059 ACCATGTTGGCTCAACAGAGTGGAAGTACAGCAGCCAGGCTGGAGTAGACTCGGAGTCAGAAAGGGAAGGAGACAGCAGAGCC------------------------------------------CCCATCCCGAACTTGTAAAACTT-CTCCCCAGCCTGTGGCCCGTCAGGTCCGG----------------------GGTAGGGAC--AGAGGGAAGCGGGGA---GC---TGCTGGCAGCAGTTTGG-----GAGGATAGCCCTGGC--CACC-TGGTG-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 544717 243 + 2232271 ACTGTTCTGGCTTGATGGAGAAGAAGTGAACAAACCAAGCTGG-GTAGACTC--AGTCAGAAA----CTATGATAAAACTATCATCCCTGGACTTAGGATCCTG------------------------GTCCTTAC------AGAATTCACACCCACCCAGCAGCCTATCAAGTCCAGCTTGCTGTCCACGCTTAAGACCAGGAAGAGAGGAGAGCAAAGCCAAGGAACCCACATGAACTAGAATGTTCAGAAGTAG-----AACCCTTCCAGAGCTGTGTTGTC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2630747 729 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 943707 307 + 1238772 I e otoGar3.GL873658 2518206 2626 + 5252280 M e aotNan1.NW_018507213v1 1908748 3510 - 1938448 M a score=333869.000000 s hg38.chr2_KI270769v1_alt 36594 32 + 120616 TGGCCAACAGGTGGAGGAAGTGGGGCCAGAGG s panTro5.chr2A 3488879 32 + 111504155 TGGCCAACAGGTGGAGGAAGTGGGGCCAGAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359080 32 + 114371477 TGGCCAACAGGTGGAGGAAGTGGGGCCAGAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 234719 32 + 637652 TGGCCAACAGGTGGAGGAAGTGGGGCCAGAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030133 32 + 81552678 TGGCCAACAGGTGGAGGAAGTGGGGCCAGAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3292571 32 + 108979918 TGGCCAACAGGTGGCGGAAGTGGGGCCAGAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005331 32 - 111193037 TGGCCAACAGGTGGCGGAAGTGGGGCCAGAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400117 32 + 3644372 TGGCCAACAGGTGGCGGAAGTGGGGCCAGAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3354758 32 - 10304083 TGGCCAACAGGTGGCGGAAGTGGGGCCAGAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437642 32 - 107702431 TGGCCAATAGGTGGAGGAAGTGGGGCCAGAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 983215 32 + 1565135 TGGCCAACAGGTGGCGGAAGTGGGGCCAGGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343456 32 - 13651311 TGGCCAACAGGTGGAGGAAGTGGGGCCAGGAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436217 32 - 108792865 TGGCCAACAGGTGGAGGAAGTGGGGCCAGGTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3090516 32 - 7082604 TGGCCAACAGGTGGAGGAAGTGGGGCCAGGTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576215 22 + 5243153 ----------GTGGAGGAAGTGGGGCCAGGTG i cebCap1.NW_016107454v1 C 0 C 0 s proCoq1.NW_012151163v1 944014 32 + 1238772 TGGCCAACAGATGGAGGAAGTGAGGTCAGAGG i proCoq1.NW_012151163v1 I 307 I 186 s canFam3.chr17 2023971 23 + 64289059 TTGCC-ACAGGTGGAAGAAGTGGG-------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 544960 26 + 2232271 TGG------GGTAGAAGAGCTGGGGTTGGGTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2630747 729 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e otoGar3.GL873658 2518206 2626 + 5252280 M e aotNan1.NW_018507213v1 1908748 3510 - 1938448 M a score=1837564.000000 s hg38.chr2_KI270769v1_alt 36626 246 + 120616 ---AGTCTCGGGAACTTGCTG--AAGGGCCCTCACTGGTGTTGCTGGCCAAGCAGG--------CCTTCTGTCCCCAGGAGTCTGGCTTTTGCAGCCATGG------GTTGGATAAAGATGTCTTTA---------------CCTCTTCCCT------------------------------GGGG--TATTTCTTCTCCTGCACTCCAG--CCTGGAAGCTGCTCGGTGGTCGTGAGCACTGTCCTCGAGGAGCAGGGCTTTATCCATCCTCTCTCCCCCGGAGCAAGTCTCG-T--CTACGTCCCTCCCAA-AGTT--- s panTro5.chr2A 3488911 246 + 111504155 ---AGTCTCGGGAACTTGCTG--AAGGGCCCTCACTGGCGTTGCTGGCCAAGCAGG--------CCTTCTGTCCCCAGGAGTCTGGCTTTTGCAGCCATGG------GTTGGATAAAGATGTCTTTA---------------CCTCTTCCCT------------------------------GGGG--TATTTCTTCTCCCGCACTCCAG--CCTGGAAGCTGCTCGGTGGTCGTGAGCACTGTCCTTGAGGAGCAGGGCTTTATCCATCCTCTCTCCCCCGGAGCAAGTCTCA-T--CTACGTCCCTCCCAA-AGTT--- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359112 246 + 114371477 ---AGTCTCGGGAACTTGCTG--AAGGGCCCTCACTGGCGTTGCTGGCCAAGCAGG--------CCTTCTGTCCCCAGGAGTCTGGCTTTTGCAGCCATGG------GTTGGATAAAGATGTCTTTA---------------CCTCTTCCCT------------------------------GGGG--TATTTCTTCTCCCGCACTCCAG--CCTGGAAGCTGCTCGGTGGTCGTGAGCACTGTCCTTGAGGAGCAGGGCTTTATCCATCCTCTCTCCCCCGGAGCAAGTCTCA-T--CTACGTCCCTCCCAA-AGTT--- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 234751 247 + 637652 ---AGTCTCGGGAACTTGCTG--AAGGGCCCTCACTGGCGTTGCTGGCCAAGCAGG--------CCTTCTGTCCCCAGGAGTCTGGCTTTTGCAGCCATGG------GTTGGATAAAGATGTCTTTA---------------CCTCTTCCCT------------------------------GGGG--TATTTCTTCTCCCGCACTCCAG--CCTGGAAGCTGCTCGGTGGTCGTGAGCACTGTCCTCGAGGAGCAGGGCTTTATCCGTCCTCCCTCCCCCGGAGCAAGTCTCATT--CTACGTCCCTCCCAA-AGTT--- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030165 245 + 81552678 ---AGTCTCGGGAACTTGCTG--AAGGGCCCTCACTGGCGTTGCTGGCCAAGCAGG--------CCTTCTGTCCCCAGCAGTCTGGCTTTTGCAGCCATGA------GTTGGATAAAGACGTCTTTA---------------CCTCTTCCCT------------------------------GGGG--TATTTCTTCTCCCGCACTCCAG--CCTGGAAGCTGCCCGGTGGTCGTGAGCACTGTCCTCGAGGAGCAGGGCTTTATCCGTCCTCTCT-CCCCGCAGCAAGTCTCA-T--CTACGTCCCTCCCAA-AGTT--- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3292603 287 + 108979918 ---GGTCTCGGGAACTTGCTG--AAGGACCCTCACTGGTGTTGCTGGCCAAGCAGG--------CCTTCTGTCCCCAGGAGTCTGGCTTTTGCGGCCGTGA------GTTGGATAAAGATGTCTTGACTTCTTCCCTGGGGTCTTCTTCCCTGGGGTCTTCTCCCTCGGGGTCTTCTCCCTCGGGG------TCTTCTCCCGCACTCCAG--CCAGGAAGCTGCCCGGTGGTCGTGAGCACTGTCCTGGAGGAGCAGGGCTTTATCCGTCCCCTCTCCCCAGGAGTAAGTCTCA-T--CTACGTCCCTCTCAA-AGTT--- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005363 287 - 111193037 ---GGTCTCGGGAACTTGCTG--AAGGACCCTCACTGGTGTTGCTGGCCAAGCAGG--------CCTTCTGTCCCCAGGAGTCTGGCTTTTGCGGCCGTGA------GTTGGATAAAGATGTCTTGACTTCTTCCCTGGGGTCTTCTTCCCTGGGGTCTTCTCCCTCGGGGTCTTCTCCCTCGGGG------TCTTCTCCCGCACTCCAG--CCAGGAAGCTGCCCGGTGGTCGTGAGCACTGTCCTGGAGGAGCAGGGCTTTATCCGTCCCCTCTCCCCAGGAGTAAGTCTCA-T--CTACGTCCCTCTCAA-AGTT--- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400149 287 + 3644372 ---GGTCTCGGGAACTTGCTG--AAGGACCCTCACTGGTGTTGCTGGCCAAGCAGG--------CCTTCTGTCCCCAGGAGTCTGGCTTTTGCGGCCGTGA------GTTGGATAAAGATGTCTTGACTTCTTCCCTGGGGTCTTCTTCCCTGGGGTCTTCTCCCTCGGGGTCTTCTCCCTCGGGG------TCTTCTCCCGCACTCCAG--CCAGGAAGCTGCCCGGTGGTCGTGAGCACTGTCCTGGAGGAGCAGGGCTTTATCCGTCCCCTCTCCCCAGGAGTAAGTCTCA-T--CTACGTCCCTCTCAA-AGTT--- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3354790 257 - 10304083 ---GGTCTCGGGAACTTGCTG--AAGGACCCTCACTGGTGTTGCTGGCCAAGCACG--------CCTTCTGTCCCCAGGAGTCTGGCTTTTGCGGCCGTGA------GTTGGATAAAGATGTCTTGACTGCTTCCCTGGGGTCTTCTTCCCT------------------------------GGGG------TCTTCTTCCGCACTCCAG--CCAGGAAGCTGCCCGGTGGTCGTGAGCACTGTCCTGGAGGAGCAGGGCTTTATCTGTCCCCTCTCCCCAGGAGTAAGTCTCA-T--CTACGTCCCTCCCAA-AGTT--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437674 241 - 107702431 ---GTTCTCGGGAACTTGCTG--AAGGGCTCTTACTGGTGTTGCTGGCCAAGCACG--------CCTTCTGTCCCCAGGAGTCT-GCCTTTGCGGCCATGA------GTTAGATAAAGATGTCTTGA---------------CTTCTTCCCT------------------------------GGGG------TCTTCTCCCTCATTCCAG--CCAGGAAGCTGCACGGTGGTCGTGAGCACTGTCCTGGAGGAGCAGGGCTTTGTCTGTCCCCTCTCCCCAGGAGTAAGTCTTA-T--CTACGTCCCTCCCAA-AGTT--- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 983247 257 + 1565135 ---GGTCTCGGGAACTTGCTG--AAGGACCCTCACTGGTGTTGCTGGCCAGGCACG--------CCTTCTGTCCCCAGGAGTCTGGCTTTTGCGGCCGTGA------GTTGGATAAATATGTCTTGACTGCTTCCCTGGGGTCTTCTTCCCT------------------------------GGGG------TCTTCTTCCGCACTCCAG--CCAGGAAGCTGCCCGGTGGTCGTGAGCACTGTCCTGGAGAAGCAGGGCTTTATCTGTCCCCTCTCCCCAGGAGTAAGTCTCA-T--CTACATCCCTCCCAA-AGTT--- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343488 241 - 13651311 ---GGTCTTGGGAACTTGCTG--AAGGACCCTCACTGGTGTTGCTGGCCAAGCA-G--------CCTTCTGTCCCCAGGAGTCTGCCTTTTGCGGCCGTGA------GTTGGATAAAGATGTCTTGA---------------CTTCTTCCTG------------------------------GGGG------TCTTGTCCCGCACTCCAG--CCAGGAAGCTGCCCGGTGGTCGTGAGCACTGTCCTGGAGGAGCAGGGCTTTATCCGCCCCCTCTCCCCAGGAGTAAGTCTCA-T--CTACGTCCCTCCCAA-AGTT--- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436249 230 - 108792865 ---GGTCTT----------------GGGTTCTCACTGGCGTTGCTGGCCGAGT-GG--------ACTTCTGTCCCCAGGAGTCTGGCTTTTGCTGCCATGA------GTTGGATCAAGATGTCTTTA---------------CTTCTTCCCT------------------------------GAAG--TATCACTTCTCCCACCCTCCAG--CCGGGAAGCTGCCTGGTAGTCCCGAGCTCTGTCCCCAAGGAGCAGGGTTGTATCCGTCCTCTCTCCCCAGCAGTAAGTCTCA-T--CTACCT-CCTCCCAG-CGTT--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3090548 244 - 7082604 ---GGTCTCGGGAAGTTGCTG--AAGGGCTCTCGCTGGCGTTGCTGGCCAAGCAGG--------CCTTCCGTCCCCAGGAGTCTGGCTTTTGCTGCCATGA------GTTGCATCAAGATGTCTTTA---------------CTTCTTCCCT------------------------------GAAG--TATTTCTTCTCCCACGCTCCAG--ACAGGAAGCTGCCTGGT-GTCCTGAGCTCTGTGCCCAAGGAGCAGGGTTTTATCCGTCCTCTCTCCCCAGCAGTAAGTCTCA-T--CTACGT-CCTCCCAG-CGTT--- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576237 245 + 5243153 ---GGTCTCGGGAACTTGCTG--AAGGGCTCTCGCTGGCGTTGCTGGCCAAGCAGG--------CCTTCTGTCCCCAGGAGTCTGGCTTTTGCTGCCATGA------GTTGGATCAAGATGTCTTTA---------------CTTCTTGCCT------------------------------GAAG--TATTTCTTCTCCCACGCTCCAG--CCAGGAAGCTGCCTGGAAGTCCTGAGCTCTGTCCCCAAGGAGCAGAGTTTTATCCATCCTCTCTCCCCAGCACGAAGCCTCA-T--CTACAT-CCTCCCAG-TGTT--- i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2023994 91 + 64289059 -------TCAGGA-----------------------------GCCGCCCAGGCCAG--------GTCTCTG----------------------------------------------AGTGTGTTTG---------------CTCCCTCGCT------------------------------------------------CCAACTCTAG-----GAAAGC--CCCAGGGGTGGGGGGCTCTGTTGGTGGG---------------------------------------------------------------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 544986 263 + 2232271 GGTGGTTCAGCAGGCTTTCTGCAAGGGCCTCTCCCCAACACTGCTGGTTGATGGGGTAGAGTGCCCCTGTTTCTCTGGAAGTGTAGCTATTCTGTTTCTGACATATTATAAGTTAAACCTACCTTGA---------------CTTCTTTTCT------------------------------CAGAATAATTTCTCATCCCGTACTCCACTTCTAGGAAAC------------ATGATCTCTGTCAGGAGGGAGCGGAGTTTTATCCATCCTCTTTCTTTATGACTAAGCCTCG-TCACAGTGTCCCTCCCAGCAGTTCTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2630747 729 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 944046 186 + 1238772 I e otoGar3.GL873658 2518206 2626 + 5252280 M e aotNan1.NW_018507213v1 1908748 3510 - 1938448 M a score=19838.000000 s hg38.chr2_KI270769v1_alt 36872 3 + 120616 -CCG s panTro5.chr2A 3489157 3 + 111504155 -CCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359358 3 + 114371477 -CCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 234998 3 + 637652 -CCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030410 3 + 81552678 -CCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3292890 3 + 108979918 -CCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005650 3 - 111193037 -CCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400436 3 + 3644372 -CCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355047 3 - 10304083 -CCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437915 3 - 107702431 -CCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 983504 3 + 1565135 -CCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343729 3 - 13651311 -CCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436479 3 - 108792865 -TCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3090792 3 - 7082604 -TCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576482 3 + 5243153 -TCA i cebCap1.NW_016107454v1 C 0 C 0 s proCoq1.NW_012151163v1 944232 3 + 1238772 -CCG i proCoq1.NW_012151163v1 I 186 C 0 s dasNov3.JH580157 545249 3 + 2232271 CTC- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2630747 729 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e canFam3.chr17 2024085 0 + 64289059 C e otoGar3.GL873658 2518206 2626 + 5252280 M e aotNan1.NW_018507213v1 1908748 3510 - 1938448 M a score=326818.000000 s hg38.chr2_KI270769v1_alt 36875 28 + 120616 TCCAGTCCGCACGTAGGTGGTTCCCACA s panTro5.chr2A 3489160 28 + 111504155 TCCAGTCCGCACGTAGGTGGTTCCCACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359361 28 + 114371477 TCCAGTCCGCACGTAGGTGGTTCCCACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235001 28 + 637652 TCCAGTCCGCACGTAGGTGGTTCCCACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030413 28 + 81552678 TCCAGTCCGCACGTAGGTGGTTCCCACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3292893 28 + 108979918 TCCAGTCTGCTTGTAGGTGGTTCCCTCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005653 28 - 111193037 TCCAGTCTGCTTGCAGGTGGTTCCCTCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400439 28 + 3644372 TCCAGTCTGCTTGTAGGTGGTTCCCTCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355050 28 - 10304083 TCCAGTCTGCTTGTAGGTGGTTCCCTCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437918 28 - 107702431 TCCAGTCTGCTTGTAGGTGGTTCCCTCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 983507 28 + 1565135 TCCAGTCTGCTTGTAGGTGGTTCCCACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343732 28 - 13651311 TCCAGTCTGCTTGTAGGTGGTTCCCTCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436482 28 - 108792865 TCCAGTCCACGTGTGGGTGGTTCCCACA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3090795 28 - 7082604 TCCAGTCCACATGTGGGTGGTTCCCACA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576485 28 + 5243153 TCCAGTCCACACGTGGGTGGTTCCCACA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1912263 27 - 1938448 TCCAGTCCACACGTGGGTGGTT-CCACA i aotNan1.NW_018507213v1 M 3510 C 0 s proCoq1.NW_012151163v1 944235 28 + 1238772 TCCACTCCGCACGTAGGTGATTCCCACA i proCoq1.NW_012151163v1 C 0 I 28 s canFam3.chr17 2024085 25 + 64289059 ---AGCCCAGCTGTGGGGGAGCCCCATG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 545252 28 + 2232271 TTCACTCTGCATGTGGGTGATTCCCACA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2630747 729 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e otoGar3.GL873658 2518206 2626 + 5252280 M a score=283561.000000 s hg38.chr2_KI270769v1_alt 36903 32 + 120616 TCCGCTCATGAGTTG----------------------GAGAGATACA-GCCATGG- s panTro5.chr2A 3489188 32 + 111504155 TCCGCTCATGAGTTG----------------------GAGAGATACA-GCCATGG- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359389 32 + 114371477 TCCGCTCATGAGTTG----------------------GAGAGATACA-GCCATGG- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235029 32 + 637652 TCCGCTCATGAGTTG----------------------GAGAGATACA-GCCATGG- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030441 32 + 81552678 TCCGCTCATGAGTTG----------------------GAGAGATACA-GCCATTG- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3292921 33 + 108979918 ACCGCTCATGAGTTT---------------------GGAGAGATACA-GCCATTG- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005681 33 - 111193037 ACCGCTCATGAGTTT---------------------GGAGAGATACA-GCCATTG- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400467 33 + 3644372 ACCGCTCATGAGTTT---------------------GGAGAGATACA-GCCATTG- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355078 32 - 10304083 ACCGCTCATGAGTTT----------------------TAGAGATACA-GCCATTG- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437946 33 - 107702431 ACCGCTCATGAGTTT---------------------GGAGAGATACA-GCCATTG- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 983535 32 + 1565135 AACGCTCATGAGTTT----------------------TAGAGATACA-GCCATTG- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343760 33 - 13651311 TCCGCTCATGAGTTT---------------------GGAGAGATACA-GCCATTG- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436510 33 - 108792865 TCCACTCATGAATTT---------------------GAAGAGATACA-GCCGTTG- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3090823 33 - 7082604 TCCACTCGTGAGTTT---------------------GGAGAGGTACA-GCCATTG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576513 33 + 5243153 TCCACTCGTGAGCTT---------------------GGAGAGGTACA-GCCATTG- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1912290 33 - 1938448 TCCACTCATGAGTTT---------------------GGAGAGATACA-GCCATTG- i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2024110 31 + 64289059 TCCTCCTGTGCACTG------------------------GAAATTCAGGCCATGG- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 545280 55 + 2232271 TTTTCCCATGTGTTAGAAATTTAAAACATGGCATTTGGAGAGATACA-GCCATCAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2630747 729 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 944263 28 + 1238772 I e otoGar3.GL873658 2518206 2626 + 5252280 M a score=546457.000000 s hg38.chr2_KI270769v1_alt 36935 52 + 120616 CTGGTTGTTCAAGGGCTACTGTTCTACCTTGTAAATTAACTGGGCTCCCTGA s panTro5.chr2A 3489220 52 + 111504155 CTGGTTGTTCAAGGGCTACTGTTCTACCTTGTAAATTAACTGGGCTCCCTGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359421 52 + 114371477 CTGGTTGTTCAAGGGCTACTGTTCTACCTTGTAAATTAACTGGGCTCCCTGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235061 52 + 637652 CTGGTTGTTCAAGGGCTACTGTTCTACCTTGTAAATTAACTGGGCTCCCTGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030473 52 + 81552678 CTGGTTGTTCAAGGGATACTGTCCTACCTTGTAAATTAACTGGGCTCCCTGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3292954 52 + 108979918 CTGGTCGTTCCAGGGATACTGTTCTACCTTGTAAATTAACTGGGCTCCCTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005714 52 - 111193037 CTGGTCGTTCCAGGGATACTGTTCTACCTTGTAAATTAACTGGGCTCCCTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400500 52 + 3644372 CTGGTCGTTCCAGGGATACTGTTCTACCTTGTAAATTAACTGGGCTCCCTGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355110 52 - 10304083 CTGGTTGTTCCGGGGATACTGTTCTACCTTGTAAATTAACTGGGCACCCTGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3437979 52 - 107702431 CTGGTTGTTCCAGGGATACTGTTCTACCTTGTAAATTAACTGGGCTCCCTGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 983567 52 + 1565135 CTGGTCGTTCCAGGGATACTGTTCTACCTTGTAAATTAACTGGGCTTCCTGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343793 52 - 13651311 CTGGTTGTTCAAGGGATACTGTTCTACCTTGTAAATTAACTGGGCTCCCTGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436543 50 - 108792865 CTGGTTATTCAAGGG-TACTTTTCTGTCTTATAAATTAGCTGGGCT-CCTGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3090856 50 - 7082604 CTGGTTATTCAACGG-TACTTTTCCATCTTGTAAATTAGTTGGGCT-CCTGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576546 50 + 5243153 CTCGTTATTCAAGGG-TACTTTTCCATCTTGTAAATTAGTTGGGCT-CCTGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1912323 50 - 1938448 CTGGTTATTCCAGGG-TACTTTTCTATCTTGTAAATTAGTTGGGCT-CCTGA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 944291 52 + 1238772 CTGGTTGTTCAAGGAATACGCTTCTAGCTTGTAAATTAACAGGGCTCCCTGA i proCoq1.NW_012151163v1 I 28 I 103 s canFam3.chr17 2024141 44 + 64289059 -----TGTTCAGAGGGTACAGCTTTCTCCTG---GGTACTCGGGATCCTTCT i canFam3.chr17 C 0 I 4 s dasNov3.JH580157 545335 52 + 2232271 CTTGTTACTCAAGTGGCAGTTTTCTAGTTTGTAAATTGACCCGTGTCCCTAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2630747 729 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e otoGar3.GL873658 2518206 2626 + 5252280 M a score=1110628.000000 s hg38.chr2_KI270769v1_alt 36987 111 + 120616 TTC-----TGTCGTGTCCCTTTCTTGTCTCCACTTCATCGCCAATTTGAGGGTCATCCTTTCCGTGTAA------GACCGAATTTCCAGCCCAAAAAGAATGGGGAGCCT-----GTCACTT--GGTAG-- s panTro5.chr2A 3489272 111 + 111504155 TTC-----TGTCGTGTCCCTTTCTTGTCTCCACTTCGTCGCCAATTTGAGGGTCATCCTTTCCGTGTAA------GACCGAATTTCCAGCCCAAAAAGAATGGGGAGCCT-----GTCACTT--GGTAG-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359473 111 + 114371477 TTC-----TGTCGTGTCCCTTTCTTGTCTCCACTTCGTCGCCAATTTGAGGGTCATCCTTTCCGTGTAA------GACCGAATTTCCAGCCCAAAAAGAATGGGGAGCCT-----GTCACTT--GGTAG-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235113 111 + 637652 TTC-----TGTCGTGTCCCTTTCTTGTCTCCACTTCGTCGCCAATTTGAGGGTCATCCTTTCCGTGTAA------GACTGAATTTCCAGCCCAAAAAGAACGGGGAGCCT-----GTCACTT--GGTAG-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030525 111 + 81552678 TTC-----TGTTGTGTCCCTTTCTTGTCTCCACTTCGTCGCCAGTTTGAGGGTCATCCTTTCCGTGTAA------GACCGAATTTCCAGCCCAAAAAGAATGGGGAGCCT-----GTCACTT--GGTAG-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293006 111 + 108979918 TTC-----TGTCATGTCCCTTTCTCGTCTCCACTTCGTCACCAATTTGAGGGTCATCCTTTCCATGTAA------GACCAAATTTCCAGCCCAGAAAGAATGGGGAGGCT-----GTCACTT--GGTAG-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005766 111 - 111193037 TTC-----TCTCATGTCCCTTTCTTGTCTCCACTTCGTCACCAATTTGAGGGTCATCCTTTCCATGTAA------GACCAAATTTCCAGCCCAGAAAGAATGGGGAGGCT-----GTCACTT--GGTAG-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400552 111 + 3644372 TTC-----TGTCATGCCCCTTTCTTGTCTCCACTTCGTCACCAATTTGAGGGTCATCCTTTCCATGTAA------GACCAAATTTCCAGCCCAGAAAGAATGGGGAGGCT-----GTCACTT--GGTAG-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355162 111 - 10304083 TTC-----TGTCATGTCCCTTTCTTGTCTCCACTTCGTCACCAATTTGAGGGTCATCCTTTCCATGTAA------GACCAAATTTCCAGCCCAGAAAGAATGGGGAGGCT-----GTCACTT--GGTAG-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438031 111 - 107702431 TTC-----TGTCATGTCCCTTTCTTGTCTCCACTTCGTCACCAATTTGAAGGTCATCCTTTCCATGTAA------GACCAAATTTCCAGCCCGGAAAGAATGGGGAGGCT-----GTCACTT--GGTAG-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 983619 111 + 1565135 TTC-----TGTCATGTCCCTTTCTTGTCTCCACTTTGTCACCAATTTGAGGGTCATCCTTTCCATGTAA------GACCACATTTCCAGCCCAGAAAGAATGGGGAGGCT-----GTCACTT--GGTAG-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343845 111 - 13651311 TTC-----TGTCATGTCCCTTTCTTGTCTCCACTTCTTCACCAATTTGAGGGTCATCCTTTCCATGTAA------GACCAAATTTCCAGCCCAGAAAGAATGGAGAGCCT-----GTCACTT--AGTAG-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436593 108 - 108792865 TTC-----T-TCATGTCCCTTTCTTGTCTCCACTTCGTTGCC-TTTCGAGGGTCATCCTTTCCATGTAA------GACCAAATTTCCAGTCCAAAAAGAGTGGGGAG-CT-----GTCACTT--GATAG-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3090906 109 - 7082604 TTC-----TGTCATGTCCCTTTCTTGTCTCCACTTCGTCGCC-TTTTGA-GGTCATGCTTTCCATGTAA------GACCAAATTTCCAGTCCAGAAAGAGTGGGGAGCCT-----GTCACTT--GATAG-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576596 110 + 5243153 TTC-----TGTCATGTCCCTTTCTTGTCTCCACTTCGTTGCC-TTTTGAGGGTCATCCTTTCCATGTAA------GACCAAATTTCCAGTCCAAAAAGAGTGGGGAGCCT-----GTCACTT--GATAG-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1912373 110 - 1938448 TTC-----TGTCATGTCCATTTCTTGTCTCCACTTCGTTGCC-TTTTGAGGGTCATCCTTTCCACGTAA------GACCAAATTTCCAGTCCAAAAAGAGTGGGGAGCCT-----GTCACTT--GATAG-- i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2024189 125 + 64289059 CTCACCAGTGAACTGTGTCCTTTTGGTCTGCACATTCCAGCC-GTTGGAGCTCCCTCCCCTTCCTGGAAGGTGATGAGCAGACTT-CACCCCAGAAGGGA--GTGAGCCTCTGTGGTCACTCCAGATAG-- i canFam3.chr17 I 4 C 0 s dasNov3.JH580157 545387 103 + 2232271 GTC-----TATCATTTTCCTCTCTCATTTATACTTT---------------------CTACCCATATAAGGCACTGACCAAACTTCCAACCTATAGTGAGGAGTGAGTCTATTTTGCCACAT--CTGAGTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2630747 729 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 944343 103 + 1238772 I e otoGar3.GL873658 2518206 2626 + 5252280 M a score=28611.000000 s hg38.chr2_KI270769v1_alt 37098 2 + 120616 GT s panTro5.chr2A 3489383 2 + 111504155 GT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359584 2 + 114371477 GT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235224 2 + 637652 GT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030636 2 + 81552678 GT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293117 2 + 108979918 GT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005877 2 - 111193037 GT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400663 2 + 3644372 GT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355273 2 - 10304083 GT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438142 2 - 107702431 GT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 983730 2 + 1565135 GT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343956 2 - 13651311 GT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436701 2 - 108792865 GT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091015 2 - 7082604 GT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576706 2 + 5243153 GT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1912483 2 - 1938448 GT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 944446 2 + 1238772 GT i proCoq1.NW_012151163v1 I 103 C 0 s canFam3.chr17 2024314 2 + 64289059 CT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 545490 2 + 2232271 GT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2630747 729 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e otoGar3.GL873658 2518206 2626 + 5252280 M a score=639029.000000 s hg38.chr2_KI270769v1_alt 37100 47 + 120616 TGTGAAGAAA-------AGATGGAAAGGTTAAAGGCATTGTTAATT-GGGGAAGT s panTro5.chr2A 3489385 47 + 111504155 TGTGAAGAAA-------AGATGGAAAGGTTAAAGGCATTGTTAATT-GGGGAAGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359586 47 + 114371477 TGTGAAGAAA-------AGATGGAAAGGTTAAAGGCATTGTTAATT-GGGGAAGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235226 47 + 637652 TGTGAAGAAA-------AGATGGAAAGGTTAAAGGCATTGTTAATT-GGGGAAGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030638 47 + 81552678 TGTGAAGAAA-------AGATGGAAAGGTTAAAGGCATTGTTAATT-GGGGAAGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293119 47 + 108979918 TGTGAAGAAA-------AGATGGAAAGGTTAAAGGCGTTGTTAATT-GGGGAAGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005879 47 - 111193037 TGTGAAGAAA-------AGATGGAAAGGTTAAAGGCGTTGTTAATT-GGGGAAGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400665 47 + 3644372 TGTGAAGAAA-------AGATGGAAAGGTTAAAGGCGTTGTTAATT-GGGGAAGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355275 48 - 10304083 TGTGAAGAAA-------AGATGGAAAGGTTAAAGGCGTTGTTAATTGGGGGAAGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438144 47 - 107702431 TGTGAAGAAA-------AGATGGAAAGGTTAAAGGCGTTGTTAATT-GGGGAAGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 983732 47 + 1565135 TGTGAAGAAA-------AGATGGAAAGGTTAAAGGCGTTGTTAATT-GGGGAAGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3343958 47 - 13651311 TGTGAAGAAA-------AGATGGAAAGGTTAAAGGCATTGTTAATT-GGGGACGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436703 47 - 108792865 TGTGAGGAGA-------AGGTGGAAAGGTTAAAGGCATGGTTAATT-GGGGGAGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091017 47 - 7082604 TGTGAAGAAA-------AGATGGAACAGTTAAAGGCATTGTTAATT-GGGGAAGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576708 47 + 5243153 TGTGAAGAAA-------AGATGGAACAGTTCAAGGCATTGTTAATT-GGGGAAGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1912485 47 - 1938448 TGTGAAGAAA-------AGATGGAACAGTTAAAGGCATTGTTAATT-GGGGGAGT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2631476 47 - 159902609 TGTGATGAAA-------AGATAGAAAGGTTTAAGGCATTGTTAAAT-GGGGAAGT i micMur3.chr8 I 729 C 0 s proCoq1.NW_012151163v1 944448 47 + 1238772 TGTGATGAAA-------AGATAGAAAGGTTTAAGGCATTGTTAAAT-GGGGAAGT i proCoq1.NW_012151163v1 C 0 C 0 s canFam3.chr17 2024316 32 + 64289059 ----------------------CTAAGAGTAAGGGCAGTGCCCAAG-CGGGACGT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 545492 54 + 2232271 GCTGATGAAAAGGTGTTAGATGGAAAGGTTGAAGACACTGTTAAGT-GGGGAAGt i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91408437 1652 - 120129022 I e otoGar3.GL873658 2518206 2626 + 5252280 M a score=750685.000000 s hg38.chr2_KI270769v1_alt 37147 51 + 120616 TTGAGGGTGTTTCTGTTTAATCAGTTATGCCTGGTAGCTATCATAGTCAAG s panTro5.chr2A 3489432 51 + 111504155 TTGAGGGTGTTTCTGTTTAATCAGTTATGCCTGGTAGCTATCATAGTCAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359633 51 + 114371477 TTGAGGGTGTTTCTGTTTAATCAGTTATGCCTGGTAGCTATCATAGTCAAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235273 51 + 637652 TTGAGGGTGTTTCTATTTAATCAGTTATGCCTGGTAGCTATCATAGTCCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030685 51 + 81552678 TTGAGGGTGTTTCTATTTAGTCAGTTATGCCTGGTAGCTATCATAGTCAAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293166 51 + 108979918 TTGAGGGTGTTTCTATTGAATCAGTTATGCCTGGTAGCTATCATAGTCAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005926 51 - 111193037 TTGAGGGTGTTTCTATTGAATCAGTTATGCCTGGTAGCTATCATAGTCAAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400712 51 + 3644372 TTGAGGGTGTTTCTATTGAATCAGTTATGCCTGGTAGCTATCATAGTCAAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355323 51 - 10304083 TTGAGGGTGTTTCTATTTAGTCAGTTATGCCTGGTAGCTATCATAGTCAAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438191 51 - 107702431 TTGAGGGTGTTTCTATTTAATCAGTTATGCCTGGTAGCTCTCATAGTCAAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 983779 51 + 1565135 TTGAGGGTGTTTCTATTTAGTCAGTTATGCCTGGTAGCTATCATAGTCAAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344005 51 - 13651311 TTGAGGGTGTTTCTATTTAATCAATTATGCCTGGTAGCTATCATAGTCAAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436750 51 - 108792865 TTGAAAGTGTTTCTATTTAAGCAGTTATGCCTGGTAGCTATCATAGTCAAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091064 51 - 7082604 TTGCAAGTGTTTCTATTTAATCAGTTATGCCTGGTAGCTATCATGGTCAAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576755 51 + 5243153 TTAGAAGTGTTTCTATCTAATCAGTTATGCCTGGTGGCCATCATGGTCAAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1912532 51 - 1938448 TTGGAAGTGTTTCTATTTAATCAGTTATGCCTGGTAGCTATCATAGTCAAG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2631523 51 - 159902609 TTGGTGATGTTTCTATTTAATCAGTCATGCCTGGTGGCTTTGATAGTCAAG i micMur3.chr8 C 0 I 704 s proCoq1.NW_012151163v1 944495 51 + 1238772 TTGGGGATGTTTCTATTTAATCAAGTATGCCTGGAGGCTTTGATAGTCAAG i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2520832 51 + 5252280 TTGGGGGTGTTTCTGTTTCAGCAGTTGTGCCTGATGGCTTTGGTAGTCTGG i otoGar3.GL873658 M 2626 C 0 s canFam3.chr17 2024348 51 + 64289059 TTGGGCATATTTCTGCTTGATAAATCGTGCCTAGAGGCTTTGGAAATCAAG i canFam3.chr17 C 0 I 4 s dasNov3.JH580157 545546 51 + 2232271 tttattatatttatatttaataaattatGCCTCATAGTTTTGATAGTCTTG i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91408437 1652 - 120129022 I a score=274166.000000 s hg38.chr2_KI270769v1_alt 37198 24 + 120616 AAACAGCTGTTTTCCTATTTCTTA s panTro5.chr2A 3489483 24 + 111504155 AAACAGCTGTTTTCCTATTTCTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359684 24 + 114371477 AAACAGCTGTTTTCCTATTTCTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235324 24 + 637652 AAACAGCTGTTTTCCTATTTCTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030736 24 + 81552678 AAACAGCTGTTTTCCTATTTCTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293217 24 + 108979918 AAACGGCTGCTTTCCTATTTCTTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5005977 24 - 111193037 AAACGGCTGCTTTCCTATTTCTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400763 24 + 3644372 AAACGGCTGCTTTCCTATTTCTTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355374 24 - 10304083 AAACGGCTGCTTTCCTATTTCTTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438242 24 - 107702431 AAACGGCTGCTTTCCTATTTCTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 983830 24 + 1565135 AAACGGCTGCTTTCCTATTTCTTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344056 24 - 13651311 AAATGGCTGCTTTCCTATTTCTTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436801 24 - 108792865 AAACAGCTGTTTTCGTATTTCTTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091115 24 - 7082604 AAACGACTGTTTTCGTATTTCTTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576806 23 + 5243153 AAACGGCGGCTTTCGTA-TTCTTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1912583 24 - 1938448 AAGTGGCAGTTTTCATATTTCTTA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 944546 24 + 1238772 AGACGACTGTTCCCATATTTCTTA i proCoq1.NW_012151163v1 C 0 I 676 s otoGar3.GL873658 2520883 24 + 5252280 AGACGGCTATTCTCATATTTCATG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2024403 24 + 64289059 GGCAGGATATTCTCATATTTCTTA i canFam3.chr17 I 4 C 0 s dasNov3.JH580157 545597 22 + 2232271 AGGTGACCAATCTCATTTTTCT-- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I a score=614825.000000 s hg38.chr2_KI270769v1_alt 37222 68 + 120616 CACGGATCAGCCTTGTTTT-CCCCCATCCCAGCAT----AAATAAAACCATCTCTTCCC--TCTGCCTGACTGCA s panTro5.chr2A 3489507 68 + 111504155 CACGGATCAGCCTTGTTTT-CCCCCACCCCAGCAT----ACATAAAACCATCCCTTCCC--TCTGCCTGACTGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359708 68 + 114371477 CACGGATCAGCCTTGTTTT-CCCCCACCCCAGCAT----ACATAAAACCATCCCTTCCC--TCTGCCTGACTGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235348 68 + 637652 TACGGATCAGCCTTGTTTT-CCCCCACCCCA-CAT----AAATAAAACCATCCGTTCCC-GTCTGCCTGACTGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030760 67 + 81552678 TAAGGATCAGCTTTGTTTT-CCCC---CCCAGCAT----AAATAAAACCATCCCTTCCCCCTCTGCCTGACTGCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293241 65 + 108979918 TAAGGATTCGCTTTGTTTT-CC-----CCCGGCAT----AAATAAAACCATTCCTTCCCCCTCTGCCTGACTGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5006001 65 - 111193037 TAAGGATTCGCTTTGTTTT-CC-----CCCGGCAT----AAATAAAACCATTCCTTCCCCCTCTGCCTGACTGCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400787 65 + 3644372 TAAGGATTCGCTTTGTTTT-CC-----CCCGGCAT----AAATAAAACCATTCCTTCCCCCTCTGCCTGACTGCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355398 65 - 10304083 TAAGGATTCGCTTCGTTTT-CC-----CCTGGCAT----AAATAAAACCATTCCTTCCCCCTCTGCCTGACTGCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438266 65 - 107702431 TAAGGATTCGCTCTGTTTT-CC-----CCCAGCAT----AAATAAAACCATTCCTTCCCCCTCTGCCTGACTGCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 983854 65 + 1565135 TAAGGATTCGCTTTGTTTT-CC-----CCCGGCAT----AAATAAAACCATTCCTTCCCCCTCCGCCTGACTGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344080 65 - 13651311 TAAGGATTAGCTTTGTTTT-CC-----CCTGGCAT----AAATAAAACTATTCCTTCCCCCTCTGCCTGACTGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436825 65 - 108792865 TAAGGATCAGCTTTGTTTT-CC-----CCCAGCCC----AAATAAAACCATTTCTTCCCCCTCAGCCTGACTGTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091139 64 - 7082604 TAAGGATCAGCTTTGTTTT--C-----CCCAGCCT----AAATAAAGCCATTTCTTCCCCCTCAGCCTGACTGTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576829 65 + 5243153 TAAGGATCAGCTTTGTTTT-CC-----CCCAGCCT----AAATAAAACCATTTCTTCCCCCTCAGCCTGACTCTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1912607 66 - 1938448 TAAGGATCAGCTGTGTTTTCCC-----CCCCACCT----AAATACAACCATTTCTTCCCCCTCAGCCTGGCTGTA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2520907 62 + 5252280 TAGGGGGCAGCTGTCTTTT-CC-----TTCGGCAT----AAATGAG--CATTT-TTCCCTCTCATACTGACAGCA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2024427 65 + 64289059 TGAGGAACAGCTATGGTTT-CCC----TTCAACAT----AAAAATAA-TATTTCTTCCCAGTCCACCTGACTGCA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 545619 67 + 2232271 -AAGTAACAGCTGTGTTT--CC-----TTCAGCATTAAAAAAAAAAATTGTTTCCTCCAACTCTGTAAGACTGTA i dasNov3.JH580157 C 0 I 520 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 944570 676 + 1238772 I a score=965866.000000 s hg38.chr2_KI270769v1_alt 37290 110 + 120616 GCCTGAGCATCGC--CTCCAACCCC-GCCC------TCCCACGTGGTTCATAGTCCCGGGAGGGGGCTGGACCCAGGTCTGtgggactctgcctgggccg------gggactggaactgggactg s panTro5.chr2A 3489575 110 + 111504155 GCCTGAGCATCGC--CTCCAACCCC-GCCC------TCCCACGTGGTTCATAGTCCCGGGAGGGGGCTGGACCCAGGTCTGtgggactctgcctgggccg------gggactggaactgggactg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359776 110 + 114371477 GCCTGAGCATCGC--CTCCAACCCC-GCCC------TCCCACGTGGTTCATAGTCCCGGGAGGGGGCTGGACCCAGGTCTGtgggactctgcctgggccg------gggactggaactgggactg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235416 110 + 637652 GCCTGAGCGTCTC--ATCCAACCCT-GCCC------TCCCACGTGGTTCATAGTCCCGGGAGGGGGCTGGACCCAGGTGTGtgggactctgcctgggccg------gggactggaactgggactg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030827 111 + 81552678 GCCTGAGCATCTC--CTGCAACCCCGGCCT------TCCCACGTGGTCCATAGTCCTGGGAGGGGGCTGGACCCAGGTCTGTGGGACTCTGCCTGGGCCG------GGGACTGGAGGTGGGACTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293306 111 + 108979918 GCCTGAGCATCTC--CTCCAACCCC-GCCC-----TTCCCACGTCGTTCATAGTCCCGGGACGGGGCTGGACCCAGGTCTGtgggactctgcctgggctg------gggactgggactgggactT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5006066 110 - 111193037 GCCTGAGCATCTC--CTCCAACCCC-GCCC-----TTCCCACGTCGTTCATAGTCCCgggacggggctgga-ccaggtctgtgggactctgcctgggctg------gggactgggactgggactT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400852 111 + 3644372 GCCTGAGCATCTC--CTCCAACCCC-GCCC-----TTCCCACGTCGTTCATAGTCCCGGGACGGGGCTGGACCCAGGTCTGtgggactctgcctgggctg------gggactgggactgggactT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355463 117 - 10304083 GCCTGAGCATCTC--CTCCAACCCC-GCCC-----TTCCCATGTCGTTCATAGTCCCGGGAGGGGGCTGGACCCAGGTCTGtgggactctgcctgggctggggactgggactgggactgggactT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438331 111 - 107702431 GCCTGAGCATCTC--CTCCAACCCC-GCCC-----TTCCCACGTCGCTCATAGTCCCGGGAGGGGGCTGGACCCAGGTCTGtgggactctgcctgggctg------gggactggggctgggactT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 983919 110 + 1565135 GCCTGA-CATCGC--CTCCAACCCC-GCCC-----TTCCCACGTCGTTCATAGTCCCGGGACGGGGCTGGACCCAGGTCTGtgggactctgcctgggctg------gggactgggactgggactT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344145 111 - 13651311 GCCTGAGCACCTC--CTCCAACCCC-GCCC-----TTCCCACGTCGTTCATGGTCCCGGGAGGGGGCTGGACCCAGGTCTGtgggactctgccagggctg------gggactgggactgggactT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436890 105 - 108792865 GGCTGAGCATCTC--CTCCGACCCC-GCCT-----TTCCCACGTGATTCATAGTCCTGGGAAGGGGCTGGACACAGGTCTGTGGGACTCTGCCC------------GGGCCTCGGCCTGGAACTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091203 104 - 7082604 GGCTGAGCATCT---CTCAGACCCA-GCCC-----TTCCCACATCGTTCATAGTCCTGGGAAGGGGCTGGACCCAGGTCTGTGGGACTCTGCCC------------GGGCCTCGGCCTGGGACTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576894 105 + 5243153 GGCCAAGCATCTC--CTCCGACCCC-GCCC-----TTCCCACATCGTTCATAGTCCTGGGAAGGGGCTGGACCCAGGTCTGTGGGACTCTGCAC------------AGGCCTCAGCCTGGGACTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1912673 105 - 1938448 GGCTGAGCATCTC--CTCCGACCCC-GCCC-----TTCCCACGTCGTTCATAGTCCTGGGAAGGGGCTGGACCCAGCTCTGTGGGACTCTGCCT------------GGCCCTCGGCCTGGGACTT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2520969 93 + 5252280 GCCCTGGCACCCCCTCTCCAGCCCT-GCCCAAGTGTGTCCACCTCATTCACACTCACAGG------------CCAGACTT-------------TGGACCC------CCATCTGGACCTGGGAAAT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2024492 62 + 64289059 G-CGGAGCATGTC--CAGCAACCCT-GCCC-----CTGTTGCAT-GATCAT--------------GCTG---CCAGCTCTG-------------------------GGGATTGG----------- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 944570 676 + 1238772 I e dasNov3.JH580157 545686 520 + 2232271 I a score=1794587.000000 s hg38.chr2_KI270769v1_alt 37400 171 + 120616 AACAGCTGG----TTTT-TTAGGCATTTT-GTCTGCTGCTAACAGAAAACTCAGGGCATTGAGCACCCAGGCC----------TTA-----ATCGAAACCACCAGATACCC---TGAAGCGCAGAGCTGCACCAAGTGCTCTGGTTTCTTTTCCTACTGAGGTCCGTGTGAATTATAGATTCAAAATGACTCC--TC s panTro5.chr2A 3489685 171 + 111504155 gACAGCTGG----TGTT-TTAGGCATTTT-GTCTGCTGCTAACAGAAAACTCAGGGCATTGAGCACACAGGCC----------TTA-----ATCGAAACCACCAGATACCC---TGAAGCGCAGAGCTGCACCAAGTGCTCTGGTTTCTTTTCCTACTGAGGTCCGTGTGAATTATAGATTCAAAATGACTCC--TC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3359886 171 + 114371477 gACAGCTGG----TGTT-TTAGGCATTTT-GTCTGCTGCTAACAGAAAACTCAGGGCATTGAGCACACAGGCC----------TTA-----ATCGAAACCACCAGATACCC---TGAAGCGCAGAGCTGCACCAAATGCTCTGGTTTCTTTTCCTACTGAGGTCCGTGTGAATTATAGATTCAAAATGACTCC--TC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235526 171 + 637652 gACAGCTAG----TTTT-TTAGGCATTTT-GTCTGCTGCTAACAGAAAACTCAGGGCATTGAGCACGCAGGCC----------TTA-----ATCGAAACCACCAGATACCC---TGAAGCGCAGAGCTGCACCAAGTGCTCTGGTTTCTTTTCCTACTGAGGTCCATGTGAATTATAGATTCAAAATGACTCC--TC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3030938 157 + 81552678 GACAGCTGA---TTTTT-TTAGGCATTTT-GTCTGCTGCTAACAGAAAACTCAG---------------GGCC----------TTA-----ATGGAAACCACCAGATACCC---TGAAGCGCACAGCTGCACCAAGTGCTCTGGTTTCTTTTTCTACTGAGGTCCGTGTGAATTATAGATTCCAAATGACTCC--TC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293417 173 + 108979918 GACAGCTGA--TTTTTT-TTAGGCATTTT-GTCTGCTGCTAACAGAAAACTCAGGGCCTTGAGCACACAGGCC----------TTA-----ATTGAAACCACCAGATACCC---TGAAGGGCAGAGCTGCACCAAGTGCTCTGGTTTCTTTTCCTACTGAGGTCCGTGTGAATTATAGATTCAAAATGACTCC--TC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5006176 173 - 111193037 GACAGCCGA--TTTTTT-TTAGGCATTTT-GTCTGCTGCTAACAGAAAACTCAGGGCCTTGAGCACACAGGCC----------TTA-----ATTGAAACCACCAGATACCC---TGAAGGGCAGAGCTGCACCAAGTGCTCTGGTTTCTTTTCCTACTGAGGTCCGTGTGAATTATAGATTCAAAATGACTCC--TC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3400963 173 + 3644372 GACAGCTGA--TTTTTT-TTAGGCATTTT-GTCTGCTGCTAACAGAAAACTCAGGGCCTTGAGCACACAGGCC----------TTA-----ATTGAAACCACCAGATACCC---TGAAGGGCAGAGCTGCACCAAGTGCTCTGGTTTCTTTTCCTACTGAGGTCCGTGTGAATTATAGATTCAAAATGACTCC--TC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355580 173 - 10304083 GACAGCTGA--TTTTTT-TTAGGCATTTT-GTCTGCTGCTAACAGAAAACTCAGGGCCTTGAGCACACAGGCC----------TTA-----ATTGAAACCACCAGATACCC---GGAAGGGCAGAGCTGCACCAAGTGCTCTGGTTTCTTTTCCTCCTGAGGTCCGTGTGAATTATAGATTCAAAATGACTCC--TC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438442 173 - 107702431 GACAGCTGA--TTTTTT-TTAGGCATTTT-GTCTGCTGCTAACAGAAAACTCAGGGCCTTGAGCACACAGGCC----------TTA-----ATTGAAACCACCAGATACTC---TGAAGGGCAGAGCTGCACCAAGTGCTCTGGTTTCTTTTCCTACTGAGGTCCGTGTGAATTATAGATTCAAAATGACTCC--TC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984029 171 + 1565135 GACAGCTGA--TTTTTT-TTAGGCATTTT-GTCTGCTGCTAACAGAAAAGTCAGGGCCTTGAGCACACAGGCC----------TTA-----ATTGAAACCACCAGATACCC---TGAAGGGCAGAGCTGCACCAAGTGCTCTGGTTTCTTTTCCTCCTGAGGTCCGTGTGAATTATAGATTCAAAACGACTC----C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344256 175 - 13651311 GACAGCTGATTTTTTTT-TTAGTCATTTT-GTCTGCTGCTAACAGAAAACTCAGGGCCTTGAGCACACAGGCC----------TTA-----ATTGAAACCACCAGATACCC---TGAAGGGCAGAGCTGCACCAAGTGCTCTGGTTTCCTTTCCTACTGAGGTCCGTGTGAATTATAGATTCAAAATGACTCC--TC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3436995 169 - 108792865 CACAGCTGA----TATT-TTAGGCATTTT-TTCTTCTGCTAACAGGAGTCTCAGGGCCTTGAACACACAGGCC----------TTA-----ACTGAAACCACCAGACAGCC---TGAAGCGCAGAGCTGCGCCAA--GCTCTGGTTCCTTTTTCTACTGAGGGCCCTGTGAATTATAGACTCAGAGTGACCAT--TG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091307 169 - 7082604 CAGAGCTGA----TTTT-TTAGGCATTTT-TTCTTCTGCTAACAGAAATCTCAGGGCCTTGAACACACAGGCC----------TTA-----ATTGAAACCACCAGCTACCC---TGAAGCACAGAGCTGCACCAA--GCTCTGCTTCCTTTTCCTACTGAGGGCCCTGTGAATTATAGATTCAGAATGACTGT--TG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 576999 168 + 5243153 CACAGCTGA----TTTT-TTAGGCATTTT-TTCTTCTGCTAACAGAAATCTCAGGGCCTTGAACACACAGGCC----------TTA-----ATTGAAACCA-CAGATACCC---TGAAGTGCAGACCTGTGCCAA--GCTCTGGTTCCATTTCCTACTGAGGGCCCTGTGAATTATAGATTCAAAATGACTAT--TG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1912778 168 - 1938448 CACAGCTGA----TTTT-TTAGGCATTTT-TTCTTCTGCTAACAGAAATCTCAGGGCCTCGAACACACAGGCC----------TTA-----ATTGAAACCACCAGATACTC---TGAAGCGCAGAGCTGCACCAA--GCTCTGGTTCCTTTTCCTACTGAGGGCCCTGTGAATTATAGATTCAAAAT-ACTGT--TG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2521062 177 + 5252280 GGCAGCTGA----TTTC-AGTGGTGTTTT-GTCTGCTGCCAGCAAAGAACTC--GGCTTTGAGCACAAAGGTCCGT-CTCCTACTG-----GTGCTAAACTCCAGATGCCC----ATAGCCCGTAGCTGCATGAGGTGCTGGGGT--CTGTTCCTGTTGAGGGCCACAGGAATTGTGCATCCAGAGAGACCGTGATG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2024554 175 + 64289059 --CAGCTGG----TGTCAATAAGTATCTCAGTCCACAGCAGACA--AAACTC--GACTTTGGGTCCACAGGCCCATGCCTCGGTAG-----CTCCGAACGACCAGATACCC---TAAAGCACACAACTTCACAGA-TACTCTCGTTTTGGTCCCT-TTGAGACCCATGAGAATTGTAGATTCAGGATGATAGT--GT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 546206 186 + 2232271 AGCAACTGA---TTTCG-ATAGTTGCTTT-GTCCACTGCTATCAAGAACTTCAGAACTTTTCACACACAGGCC----CATCTTTTAATGGCATTAAAACTACCAGGTACCCTATTAGAGCACATAGCTACATGAATTGCTCTGATTTCTTTTCCTATTGAGGTTCATGTAAATCGTAGATTCAAAATAATTAT--TC i dasNov3.JH580157 I 520 I 495 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 944570 676 + 1238772 I a score=8342.000000 s hg38.chr2_KI270769v1_alt 37571 1 + 120616 T s panTro5.chr2A 3489856 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3360057 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235697 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3031095 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293590 1 + 108979918 T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5006349 1 - 111193037 T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3401136 1 + 3644372 T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355753 1 - 10304083 T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438615 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984200 1 + 1565135 T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344431 1 - 13651311 T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3437164 1 - 108792865 T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091476 1 - 7082604 T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 577167 1 + 5243153 T i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1912946 1 - 1938448 T i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2521239 1 + 5252280 C i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2024729 1 + 64289059 A i canFam3.chr17 C 0 C 0 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 944570 676 + 1238772 I e dasNov3.JH580157 546392 495 + 2232271 I a score=755776.000000 s hg38.chr2_KI270769v1_alt 37572 67 + 120616 TACAACACCTGCTTCTG-AATTTATGACAGGTGTTTAAGAATGA-GTGTGACTGAAAGGCAGATGTTTC s panTro5.chr2A 3489857 67 + 111504155 TACAACACCTGCTTCTG-AATTTATGACAGGTGTTTAAGAATGA-GTGTGACTGAAAGGCAGATGTTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3360058 67 + 114371477 TACAACACCTGCTTCTG-AATTTATGACAGGTGTTTAAGAATGA-GTGTGACTGAAAGGCAGATGTTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235698 67 + 637652 TACAACACCTGCTTCTG-AATTTATGACAGGTGTTTAAGAATGA-GTGTGACTGAAAGGCAGATGTTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3031096 68 + 81552678 TACATCACCTGCTTCTGAAATTTATGACAGGTGTTTAAGAATGA-GTGTGACTGAAAGGCAGATGTTTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293591 67 + 108979918 TACATCACCTGCTTCTG-AATTTATGACAGGTGTTTAAGAATGA-GTGTGACTGAGAGGCAGATGTTTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5006350 67 - 111193037 TACATCACCTGCTTCTG-AATTTATGACAGGTGTTTAAGAATGA-GTGTGACTGAGAGGCAGATATTTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3401137 67 + 3644372 TACATCACCTGCTTCTG-AATTTATGACAGGTGTTTAAGAATGA-GTGTGACTGAGAGGCAGATATTTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355754 67 - 10304083 TACATCACCTGCTTCTG-AATTTATGACAGGTGTTTAAGAATGA-GTGTGGCTGAGAGGCAGATATTTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438616 67 - 107702431 TACATCACCTGCTTCTG-AATTTATGACAGGTGTTTAAGAATGA-GTGTGACTGAGAGGCAGCTATTTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984201 67 + 1565135 TACATCACCCGCTTCTG-AGTTTATGACAGGGGTTTAAGAATGA-GTGTGGCTGAGAGGCAGGTATTTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344432 67 - 13651311 TACATCACCTGCTTCTG-AATGTATGACAGGTGTTTAAGAATGA-GCGTGACCGAGAGGCAGATATTTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3437165 67 - 108792865 TACCTCACCTGCTTCTC-ACTTGATGACAGGTGGTTAAGAATGA-GTGTGACTGAAAAGCAGATATTTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091477 67 - 7082604 TACCTCACCTGCTTCTG-ACTTGATGACAGGTGGTTAAGAATGA-GTGTGACTGAAAGGCATGTGTTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 577168 67 + 5243153 TACCTCACCTGCTTCTG-ACTTTATGACAGGTGGTTAAGAATGA-TTGGGACTGAAAGGCAGATGTTTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1912947 66 - 1938448 T-CCTCACCTGCTTCTG-ACTTTATGACAGGTGGTTAAGAATGA-GTGTGACTGAAAGGCAGATGTTTC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2521240 48 + 5252280 AGCGTCAGCTGCTTCTG-------------------AAGGATCA-GCAAAACT-AAAGGCAGGTGTTGC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2024730 68 + 64289059 TACATCAGCTGCTCCTG-GATTTACCGCGGGCGTTCAAGAACGATAAGAGGCAGGAAGGCAGCTATTTC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 546887 64 + 2232271 TGTACCACATGCTTCTG-AATTTACCACAGGTGTTTAAGAA-GA-ATAAGACC--AAAGCAGGTATTTC i dasNov3.JH580157 I 495 C 0 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 944570 676 + 1238772 I a score=29223.000000 s hg38.chr2_KI270769v1_alt 37639 2 + 120616 CT s panTro5.chr2A 3489924 2 + 111504155 CT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3360125 2 + 114371477 CT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235765 2 + 637652 CT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3031164 2 + 81552678 CT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293658 2 + 108979918 CT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5006417 2 - 111193037 CT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3401204 2 + 3644372 CT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355821 2 - 10304083 CT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438683 2 - 107702431 CT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984268 2 + 1565135 CT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344499 2 - 13651311 CT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3437232 2 - 108792865 CT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091544 2 - 7082604 CT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 577235 2 + 5243153 CT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1913013 2 - 1938448 CT i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2024798 2 + 64289059 CT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 546951 2 + 2232271 CT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 944570 676 + 1238772 I e otoGar3.GL873658 2521288 0 + 5252280 C a score=54865.000000 s hg38.chr2_KI270769v1_alt 37641 9 + 120616 ATCA----TGACC s panTro5.chr2A 3489926 9 + 111504155 ATCA----TGACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3360127 9 + 114371477 ATCA----TGACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235767 9 + 637652 ATGA----TGACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3031166 9 + 81552678 GTGA----TGACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293660 9 + 108979918 ATGA----TGACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5006419 9 - 111193037 ATGA----TGACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3401206 9 + 3644372 ATGA----TGACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355823 9 - 10304083 ATGA----TGACC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438685 9 - 107702431 ATGA----TGACC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984270 9 + 1565135 ATGA----TGACC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344501 9 - 13651311 ATTA----TGACC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3437234 13 - 108792865 ATAGTGAGTGACC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091546 13 - 7082604 GTAATGAGTGACC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 577237 13 + 5243153 ACAGTGAGTGACC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1913015 13 - 1938448 GTAGTGAGTGACA i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 546953 9 + 2232271 GTGA----GGACC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e canFam3.chr17 2024800 0 + 64289059 C e proCoq1.NW_012151163v1 944570 676 + 1238772 I e otoGar3.GL873658 2521288 0 + 5252280 C a score=1574026.000000 s hg38.chr2_KI270769v1_alt 37650 170 + 120616 AGGTAAAAATATCCAGCTTggctgggtacagtggctaatgcctgtaatcccagcactttgggaggccgtgaagatctcaagatctcttgaggccagaagttcgagaccagcctggccaacatggcaaaacccccatctctactaaaaatacaaaaaattagccggacatg s panTro5.chr2A 3489935 170 + 111504155 AGGTAAAAATATCCAGCTTggctgggtacagtggctaatgcctgtaatcccagcactttgggaggccgtgaagatctcaagatctcttgaggccagaagttcgagaccagcctggccaacatggcaaaacccccatctctactaaaaatacaaaaaattagccggacatg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3360136 170 + 114371477 AGGTAAAAATATCCAGCTTggctgggtacagtggctaatgcctgtaatcccagcactttgggaggccgtgaagatctcaagatctcttgaggccagaagttcgagaccagcctggccaacatggcaaaacccccatctctactaaaaatacaaaaaattagccggacatg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235776 169 + 637652 AAGTAAAAATATCCAGCTTggctgggtacagtggctaatgcctgtaatcccagcactttgggaggccgtgaagatctcaagatctcttgaggccagaagttcgagaccagcctggccaacatggcgaaa-ccccatctctactaaaaatacaaaaaattagccggacatg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3031175 169 + 81552678 AAATAAAAATCTCCAGCTCggctgggtacagtggctaatgcctgtaatcccagcactttgggaggccgtgaagatctcaagatctcttgaggccagaagttcgagaccagcctggccaacatggcgaaa-ccccgtctctcctaaaaatacaaaaaattagccggacatg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293669 169 + 108979918 AAATAAACATCTCCAGCTCggctgggcacagtggctaatgcctgtaatcccagcactttggaaggccgtgaagatctcaagatctcttgaggccagaagttcgagaccagcctggccaaaatggtgaaa-ccctgtctctactaaaaatacaaaaaattagccagacacg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5006428 169 - 111193037 AAATAAACATCTCCAGCTCggctgggcacagtggctaatgcctgtaatcccagcactttggaaggccgtgaagatctcaagatctcttgaggccagaagttcgagaccagcctggccaaaatggtgaaa-ccctgtctctactaaaaatacaaaaaattagccagacacg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3401215 169 + 3644372 AAATAAACATCTCCAGCTCggctgggcatggtggctaatgcctgtaatcccagcactttggaaggccgtgaagatctcaagatctcttgaggccagaagttcgagaccagcctggccaaaatggtgaaa-ccctgtctctactaaaaataccaaaaattagccagacacg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3355832 169 - 10304083 AAATAAACATCTCCAGCTCggctgggcacggtggctaatgcctgtagtcccagcactttggaaggccgtgaagatctcaagatctcttgaggccagaagttcgagaccagcctggccaacatggtgaaa-ccccgtctctactaaaaatacaaaaaattagccagacacg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438694 169 - 107702431 AAATAAACATCTCCAGCTCggctgggcacagtggctaatgcctgtaatcccagcactttggaaggccatgaagatctcaagatctcttgaggccagaagttcgagaccagcctggccaacatggtgaca-ccccgtctctactaaaaatacaaaaaattagccagacatg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984279 169 + 1565135 AAATAAACATCTCCAGCTCggctgggcacggtggctaatgcctgtaatcccagcactttggaaggccgtgaagatctcaagatctcttgaggccagaagttcgagaccagcctggccaacatggtgaaa-ccccgtctctactaaaaatacaaaaaattagccagacacg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344510 169 - 13651311 AAATAAACATCGCCATCTCggctgggcacagtggctaatgcctgtaatcccaggactttggaagtccatgaagatctcaaggtctcttgaggccagaagttcgagaccagcctggccaaaatggtgaaa-ctccgtctctactaaaaatacaaaaaattagccggacatg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3437247 166 - 108792865 AAATAAAAACCTCCAGCTTgactgggcatggtggctaatgcctgtaattccagcactttgggggcccgcagtgggc---agatcacttgaggccagaagtttgagaccaacctggccagcatggtgaaa-ccccgtctctactaaaaacatagaaaattagccaggcgtg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091559 166 - 7082604 AAATAAGAACCCCCAGCTTggccaggcgtggcggctcatgcctggaatcccagcactttgggaggccgtggtgggc---agatcacttgaggccagaagtttgagaccaacctggccagcatggtgaaa-ccccgtctttactaaaaacataaaaaattagccaggcatg i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 577250 164 + 5243153 AAATAAAAACCTCCAGCTTggctgggtgtggtggctaatgcctgtaatcccagcactttgggaggccgtagtgggc---agatcacttgaggccagatgtttgagaccaacctggccagcatggtgaaa-ccccatctctactaataac--aaaaaattagccgggcatg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1913028 166 - 1938448 AAACAAAAACCTCCAGCTTggccgggcgtggtggctaatgcctgtaatcccagcactttgggaggctgtggtcggc---agatcacttgaggccagaagtttgagaccaacctggccagcatggtgaaa-ccccatctctactaaaaacataaaaaattagctgggcatg i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e canFam3.chr17 2024800 0 + 64289059 C e proCoq1.NW_012151163v1 944570 676 + 1238772 I e dasNov3.JH580157 546962 0 + 2232271 C e otoGar3.GL873658 2521288 0 + 5252280 C a score=250195.000000 s hg38.chr2_KI270769v1_alt 37820 26 + 120616 gtggtgcacacca---gtactaccagcta s panTro5.chr2A 3490105 26 + 111504155 gtggtgcacacca---gtactaccagcta i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3360306 26 + 114371477 gtggtgcacacca---gtactaccagcta i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235945 26 + 637652 gtggtgcacacca---gtactaccagcta i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3031344 26 + 81552678 gtggtacacacct---gtactaccagcta i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293838 26 + 108979918 gtggtgcacacct---gtcataccagcta i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5006597 26 - 111193037 gtggtgcacacct---gtcataccagcta i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3401384 26 + 3644372 gtggtgcacacct---gtcataccagcta i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3356001 26 - 10304083 gtggtgcacacct---gtcataccagcta i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438863 26 - 107702431 gtggtgcacacct---gtcataccagcta i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984448 26 + 1565135 gtggtgcacacct---gtcataccagcta i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344679 26 - 13651311 gtggtgcacacct---gtcataccagcta i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3437413 26 - 108792865 gtggtgcacacgt---gtaatgccagcta i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091725 26 - 7082604 gtggtgcacacct---gtagtaccagcta i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 577414 26 + 5243153 gtggtgcacaccc---gtaataccagcta i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1913194 29 - 1938448 gtggtgcacacctataataataccagcta i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2024800 26 + 64289059 GTGGTGGCCACTG---ACACCTTCCGCTC i canFam3.chr17 C 0 C 0 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 944570 676 + 1238772 I e dasNov3.JH580157 546962 0 + 2232271 C e otoGar3.GL873658 2521288 0 + 5252280 C a score=312421.000000 s hg38.chr2_KI270769v1_alt 37846 35 + 120616 ctcaggaggctgaggcacgagaatctcttcaaccc s panTro5.chr2A 3490131 35 + 111504155 ctcaggaggcggagacacgagaatctcttcaaccc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3360332 35 + 114371477 ctcaggaggcggagacacgagaatctcttcaaccc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 235971 35 + 637652 ctcaggaggctgaggcacgagaatctcttcaaccc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3031370 35 + 81552678 ttcaggaggctgaggcacgagaatctcttcaaccc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293864 35 + 108979918 ctcaggaggctgatacacaagaatctcttcaaccc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5006623 35 - 111193037 ctcaggaggctgatacacaagaatctcttcaaccc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3401410 35 + 3644372 ctcaggaggctgatacacaagaatctcttcaaccc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3356027 35 - 10304083 ctcaggaggctgatacacaagaatctcttcaaccc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438889 35 - 107702431 ctcaggaggctgatacacaagaatctcttcaaccc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984474 35 + 1565135 ctcaggaggctgatacacaagaatctcttcaaccc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344705 35 - 13651311 ctcaggaggctgatacacgagaatctcttcaaccc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3437439 35 - 108792865 cttgggaggctgaggcatgagaatccctcgaaccc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091751 35 - 7082604 cttgggaggctgaggcacgagaatctcttgaaccc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 577440 35 + 5243153 cgtgggaggctgaggcctgagaatctcttgaaccc i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1913223 35 - 1938448 cttgggaggctgaggcacgagaatctctcgaaccc i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2521288 10 + 5252280 CTCTGGTGGC------------------------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2024826 16 + 64289059 CTC-------------------ACTACTTCCACCC i canFam3.chr17 C 0 I 56 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 944570 676 + 1238772 I e dasNov3.JH580157 546962 0 + 2232271 C a score=687941.000000 s hg38.chr2_KI270769v1_alt 37881 79 + 120616 aggaggtggaggttgtagtgagccaagatcataccactgcactccagcctgagcgacagagtgagactctgtcctac----aa s panTro5.chr2A 3490166 79 + 111504155 aggaggcggaggttgtagtgagccaagatcataccactgcactccagcctgagcgacagagcgagactctgtcccac----aa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3360367 79 + 114371477 aggaggcggaggttgtagtgagccaagatcataccactgcactccagcctgagcgacagagcgagactctgtcccaa----ca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 236006 79 + 637652 aggaggcggaggttgtagtgagccaagatcataccactgcactccagcctgagcgacagagcgagactctgtcccac----aa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3031405 77 + 81552678 aggaggtggaggttgtagtgagtcaagatcatactactgcactccagcctgagccacagagcgaga--ctgtctcac----aa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293899 83 + 108979918 aggaggcggaggttgtcgtgagccaagatcgtaccactgcactccagcctgagtgatggagtaagactctgtctcacaaaaaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5006658 83 - 111193037 aggaggcggaggttgtcgtgagccaagatcgtaccactgcactccagcctgagtgacggagtaagactctgtctcacaaaaaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3401445 77 + 3644372 aggaggcggaggttgtcgtgagccaagatcgtaccactgcactccagcctgagtgacggagtaagactctgtctcac------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3356062 78 - 10304083 aggaggcggaggttgtcgtcagccaagatcgtaccactgcactccagcctgagtgacagagtaagactctgtctcac-----a i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3438924 77 - 107702431 aggaggcggaggttgtcgtaagccaagatcgtaccactgcactccagcctgagtgacagagtaagactctgtctcac------ i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984509 77 + 1565135 aggaggcggaggttgtcgtgagccaagatcgtaccactgcactccagcctgagtgacagagtaagactctgtctcac------ i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344740 79 - 13651311 aggaggcggaggttgcaatgagccaagatcacaccactgcactccagcctgagtaacagagtgagactctgtctcac----aa i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3437474 77 - 108792865 agaaggcggaggttgtagtgagccaagattgcaccactgcactccagcctgggcaacagagcaagactccgtctcac------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091786 77 - 7082604 aggaggcagaggttgtagtgagccaagattgcaccactgcactccagcctgggcgaccgagcgagactctgtctcac------ i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 577475 77 + 5243153 aggaggcggaggttgtagtgagccaagattgcaccactgcactccagcctgggcgacagagcaagactctgtctcac------ i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1913258 77 - 1938448 aggaggtggaggttgtagtgagccaagattgcaccactgcactccagcctgggcgacagagcaagactccatctcaC------ i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2521298 5 + 5252280 -------------------------------------------CCAGC----------------------------------- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e canFam3.chr17 2024842 56 + 64289059 I e proCoq1.NW_012151163v1 944570 676 + 1238772 I e dasNov3.JH580157 546962 0 + 2232271 C a score=618569.000000 s hg38.chr2_KI270769v1_alt 37960 80 + 120616 aaaaa-------------------------a-aaaaaCTCCAGCTCCCATTGGTCTCTAACC-TTTACCTTTGGCCATTCAGGAATGCCCAACATCGCCTTGTGTAT s panTro5.chr2A 3490245 105 + 111504155 aaaaaaaaaaaaaacaacaacaacaaCAACA-AAAAACTCCAGCTCCCATTGGTCTCTAACC-TTTACCTTTGGCCATTCAGGAATGCCCAACATCGCCTTGTGTAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3360446 96 + 114371477 aaaaaaaaaacaaacaaaaaa---------a-caaaaCTCCAGCTCCCATTGGTCTCTAACC-TTTACCTTTGGCCATTCAGGAATGCCCAACATCGCCTTGTGTAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 236085 101 + 637652 aaaaaaaaaaaaaaaaaaaaaaaaaa----a-aaaaaCTCCAGCTCCCATTGGTCTCTAACC-TTTACCTTTGGCCATTCAGGAATGCCCAACCTCGCCTTGTGTAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3031482 86 + 81552678 aaaaaaaaca--------------------a-aaaaaCTCCAGCTCTCATTGGTCTCTAACCTTTTACCTTTGGCCGTTCAGGAATGCCCAACCTCACCTTGTGTAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3293982 88 + 108979918 aaaaaaaaaaaaa-----------------a-aaaaGCCCTAGCTCCCACTGGTCTCTAACC-TTTACCTCTGGCCGCTCAGGAAGGCCCAGCCTCGCCTTGCGCAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5006741 88 - 111193037 aaaaaaaaaaaaa-----------------a-aaaaGCTCTAGCTCCCACTGGTCTCTAACC-TTTACCTCTGGCCGCTCAGGAAGGCCCAGCCTCGCCTTGCGCAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3401522 88 + 3644372 acacacaaaaaaa-----------------a-aaaaGCTCTAGCTCCCACTGGTCTCTAACC-TTTACCTCTGGCCGCTCAGGAAGGCCCAGCCTCGCCTTGCGCAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3356140 88 - 10304083 aaaaaaaaaaaaa-----------------a-aaaaGCTCCAGCTCCCACTGGTCTCTAACC-TTTACCTCTGGCCGCTCAGGAAGGCCCAGCCTCGCCTCGCGCAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3439001 86 - 107702431 --aaaaaaaaaaa-----------------a-aaaaGCTCCAGCTCCCACTGGTCTCTAACC-TTTACCTCTGGCCGCTCAGGAAGGCCCAGCCTCGCCTTGCGCAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984586 87 + 1565135 --aaaaaaaaaaa-----------------agaaaaGCTCCAGCTCCCACTGGTCTCTAACC-TTTACCTCTGGCCGCTCAGGAAGGCCCAGCCTCGCCTCGCGCAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344819 88 - 13651311 aaaaaaaaaaaaa-----------------a-aaaaaCTCCAGCTCCCGCTGGTCTCTAACC-TTTACCTCTGGCCATTCAGGAAGGCCCAGCCTCGCCTTACACAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3437551 75 - 108792865 ---------aaaa-----------------g-aaCAGCTCTGCCTCCCGTTGGTCTCTGACC---TACCTTTAGTCACT--GGGGTGCCCAGCCTCACCTTATGGGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091863 76 - 7082604 ---------aaaa-----------------g-caaaGCTCTACCTCCCATTGGTCTCTAACC-TTTACCTTCAGTCATTC-GGGATGCCCAGCCTTGCCTTGT--GT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 577552 78 + 5243153 ---------aaga-----------------g-aaaaGCTCCGCCTCCCATTGGTCTCTAACC-TTTACCTTTAGTCATTC-GGGATGCCCAGCCTCGCCTTGTGTGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1913335 78 - 1938448 ---------CAAC-----------------G-AAAAGCGGCACCTCCCATTGGTCTCTAACC-TTTACCTTTAGTCATTC-GGGATGCCCAGCCTCACCTTGTGTGT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2521303 65 + 5252280 ------------------------------C-AAAGCCTGCAGCGCCCATCTGTTCCCAGCG-TT--------GCCGTCC-TGAATGCTTCACATC-CCCTGTGAGT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 546962 71 + 2232271 --------AAATA-----------------A-AAAACCTCCAACTCCCTGTGTTGTCCAGCC-CTCA--TTACACCGATC------GATTAACACCATTTT-TATGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e canFam3.chr17 2024842 56 + 64289059 I e proCoq1.NW_012151163v1 944570 676 + 1238772 I a score=1811735.000000 s hg38.chr2_KI270769v1_alt 38040 193 + 120616 CCTATTTTACAGTG----TGCTGAAGACTCCGT---------------------------------------GGCACTGTTTACCCATCTCTAAGGAGAGGATTTTGATGGAAATGACACTGAGTGCCCTTTAA-GATAGCGA-ATGAAAATCTGTGGGTTTAGGTGGA-AACTGCCTGTCATCTT---TCCTCACTTTGAGGACAT-TTTTTCCTAAGGACGTTCAGTCAAGCCTAGAAAAC s panTro5.chr2A 3490350 192 + 111504155 CCTATTTTACAGTG----TGCTGAAGACTCTGT---------------------------------------GGCACTGTTTACCCATCTCTAAGGAGAGGATTTTGATGGAAATGACACTGAGTGCCCTTTAAGGATAGCGACATGAAAATCTG-GGTCTTAGGTGGA-AACTGCCTGTCATCTT---TCCTCACTTTGA-GACAC-TTTTTCCTAAGGACGTTCAGTCAAG-CTAGAAAAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3360542 193 + 114371477 CCTATTTTACAGTG----TGCTGAAGACTCCGT---------------------------------------GGCACTGTTTACCCATCTCTAAGGAGAGGATTTTGATGGAAATGACACTGAGTGCCCTTTAA-GATAGCGA-ATGAAAATCTGTGGGTTTAGGTGGA-AACTGCCTGTCATCTT---TCCTCACTTTGAGGACAT-TTTTTCCTAAGGACGTTCAGTCAAGCCTAGAAAAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 236186 193 + 637652 CCTATTTTACAGTG----TGCTGAAGACTCCGT---------------------------------------GGCACTGTTTACCCATCTCTAAGGAGAGGATTTTGATGGAAATGACACTGAGTGCCCTTTAA-GATAGCGA-ATCAAAATCTGTGGGTTTAGGTGGA-AACTGCCTGTCATCTT---TCCTCATTTTGAGGGCAC-TTTTTCCTAAGGATGTTCAGTCAAGCCTAGAAAAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3031568 191 + 81552678 CCTATTTTACAATG----TGCTGAAGATTCCGT---------------------------------------GGCACTGTTTACCCATCTCTAAGGAAAGGATTTTGATGGAAATGACA--GAGTGCCCTTTAA-GATAAAGA-GTCAAACTCTGTGGGTTTAGGTAGA-AACTACCTGTCATCTT---TCCTCATTTTGAGGACAT-TTTTTCCTAAGGATGTTCAGTCAAACCTAGAAAAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3294070 192 + 108979918 CCTA-TTTACAGCA----TGCTGAAGGCTCCGT---------------------------------------AGCACGGTGTGCCCGTCTCTCAGGAGAGGATGTTGGTGGAAATGACACTGAGTGCCATTGAA-G----AAT-ATCAAAATCTGTGGATGTAGGTGGAGAACTACCTGTCATCTTTCCTCCTCATTTTGAGGACAT-TTTTTCCTAAGGATGTTCAGTCAAGCCTAGAAAAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5006829 192 - 111193037 CCTA-TTTACAGCA----TGCTGAAGGCTCCGT---------------------------------------AGCACGGTGTGCCCGTCTCTCAGGAGAGGATGTTGGTGGAAATGACACTGAGTGCCATTGAA-G----AAT-ATCAAAATCTGTGGATGTAGGTGGAGAACTACCTGTCATCTTTCCTCCTCATTTTGAGGACAT-TTTTTCCTAAGGATGTTCAGTCAAGCCTAGAAAAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3401610 192 + 3644372 CCTA-TTTGCAGCA----TGCTGAAGGCTCCGT---------------------------------------AGCACGGTGTGCCCGTCTCTCAGGAGAGGATGTTGGTGGAAATGACACTGAGTGCCATTGAA-G----AAT-ATCAAAATCTGTGGATGTAGGTGGAGAACTACCTGTCATCTTTCCTCCTCATTTTGAGGACAT-TTTTTCCTAAGGATGTTCAGTCAAGCCTAGAAAAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3356228 192 - 10304083 CCTA-TTTACAGCA----TGCTGAAGGCTCCGT---------------------------------------AGCACGGTGTGCCCGTCTCTCAGGAGAGGATGTTGGTGGAAATGACACTGAGTGCCATTTAA-G----AAT-ATCAAACTCTGTGGATGTAGGTGGAGAACTACCTGTCATCTTTCCTCCTCATTTTGAGGACAT-TTTTTCCTAAGGATGTTCAGTCAAGCCTAGAAAAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3439087 193 - 107702431 CCTATTTTACAGCA----TGCTGAAGGCTCCGT---------------------------------------GGCACGGTTTACCCATCTCTCAGGAGAGGATGTTGGTGGAAATGACACTGAGTGCCATTTAA-G----AAT-ATCAAAATCTGTGGATTTAGGTGGAGAACTACCTGTCATCTTTCCTCCTCATTTTGAGGACAT-TTTTTCCTAAGGATGTTCAGTCAAGCCTAGAAAAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984673 192 + 1565135 CCTA-TTTACAGCA----TGCTGAAGGCTCCGT---------------------------------------AGCACGGTGTGCCCGTCTCTCAGGAGAGGATGTTGGTGGAAATGACACTGAGTGCCATTTAA-G----AAT-ATCAAACTCTGTGGATGTAGGTGGAGAACTACCTGTCATCTTTCCTCCTCATTTTGAGGACAT-TTTTTCCTAAGGATGTTCAGTCAAGCCTAGAAAAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3344907 197 - 13651311 CCTATTTTCCAGCG----TGCTGAAGACTCCGT---------------------------------------GGCACAGTTTACCCATCTCCAAGGAGAGGATGTTGATGGAAATGACACTGAGTGCCATTTAA-GATAAAGA-ATCAAAACCTGCGGATGTAGGTGGAGAACTACCTGTCACCTTTCCTCCTCATTTTGAGGACTT-TTTTTCCTAAGGATGTTCAGTCAAGCCTAGAAAAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3437626 197 - 108792865 CCTGTTTGACAATG----TCCTGAAGATTCCGT---------------------------------------GGCCCTGTTTACCCATCTCTAAGGAGAGAATTTTGATGGAAATGACACTGAGTTTCCTTTAA-GATAAAGA-ATAAAAATCCACGGGTTCAGGTAGAGAACTACCTATCATCATTCCTTTTCACTTTGAGGACAT-GTTTTCCTAAGGATGTGCAGTTGAGCCCGGAAAAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3091939 196 - 7082604 CCTGTTTTACAATG----TCCTGAAGATTTCGT---------------------------------------GGCCCTGTTTACCCATCTCTAAGTAGAGGATTTTGATGGAAATGAAACTGAGTTTCCTTTAA-GATAAAGA-ATAAAAATCCGTGGGTTCAGGTAGAGAACTACCGATCATC-TTCCTTCTCACTTGGAGGACGT-GTTTTCCTAAGGACATGCAGTTGAGTCTGGAAAAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 577630 196 + 5243153 CCTGTTTTACAATG----TCCTAAAGActctgt---------------------------------------ggccctgtttacccatctctaaggagaggattttaatggaaatgacactgaatttcctttaa-gataaagA-ATAAAAATCCATGGGTTCAGGTAGAGAACTACC-ATCATCTTTCCTTCTCACTTTGAGGACAT-GTTTTCCTAAGGATGTGCAGTTGAGCCTGGAAAAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1913413 197 - 1938448 CCTGTTGTACAATG----CCCTGAAGATTCCGT---------------------------------------GGCCTTGTTTACCCATCTCTAAGGAGAGGATTTTGATGGAAATGACACTGAGTTTCCTTTAA-GATAAAGA-ATAAAAATCCATGAGTTCAGGTAGAGAACCACCTATCATCTTTCCTTCTCACTTTGAGGACAT-GTTTTCCTAAGGATGTGCAGTTGAGCCTGGAAAAC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2521368 189 + 5252280 CCCATTTCAGAGCA----TACTGAGGCCTCTGC---------------------------------------TGCAGTGTTCACCTGTCTTTAAGAAGAGAAGTTTGACAGAGACAACACCATGCTGCCTGAAA------ACA-ATAACAATTCATAGGTTCAGGTCCAGGACTAC--GTCCTCCTTCCGTTTCTCTGTGAGGACGC-G-TTCCCTGAGGGTGTGCAGTCAGGTCTAGAGAGC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2024898 181 + 64289059 CGTACTTTA----G----TCCTGGAGACTCTGC-----------------------------------------CCCTCTTCATCTGCCTTTCAGGAGTACGCCTTGGTGGAGGTGGTACCAAGTCTCCTGTAA-AATGAAGC-ATGAGATCCGG-----GCAGGTGCAGCACTCCCTGTCATCCTTAGCCTCAATTTTGAGGATGT-ATTTTCCCAAAGACACACAAACAAG-----AAAGC i canFam3.chr17 I 56 C 0 s dasNov3.JH580157 547033 233 + 2232271 GCTATTTTATAGTGAATTTTATAACGACTTTGCTAGTCATTATTTTGCAATGGACTTTATAATGATTTTGCCAGTACTGTTTATTCATCTGCAAGGAGAGAAGATTGATAGATATGATACTGAGCTTCCTTTAA-AGTAAGGA-ATAAAATTCT-TGGGTTCAGGTATAGAACTACCTGTCATCCTT--CCCTAATTTTGAGGACATCTTTTTCTTCAGGATGTGCAGA-----CTAGACAGC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2631574 704 - 159902609 I e mm10.chr12 91408437 1652 - 120129022 I e proCoq1.NW_012151163v1 944570 676 + 1238772 I a score=84041.000000 s hg38.chr2_KI270769v1_alt 38233 8 + 120616 AT-GCTTTG- s panTro5.chr2A 3490542 8 + 111504155 AT-GCTTTG- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3360735 8 + 114371477 AT-GCTTTG- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 236379 8 + 637652 AT-GCTTTG- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3031759 8 + 81552678 AT-GCTTTG- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3294262 9 + 108979918 ATGGCTTTG- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007021 9 - 111193037 ATGGCTTTG- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3401802 9 + 3644372 ATGGCTTTG- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3356420 8 - 10304083 AT-GCTTTG- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3439280 8 - 107702431 AT-GCTTTG- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984865 8 + 1565135 AT-GCTTTG- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345104 8 - 13651311 AT-GCTTTG- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3437823 8 - 108792865 AT-GCTTTG- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3092135 8 - 7082604 AT-GCTTTG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 577826 8 + 5243153 AT-GCTTTG- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1913610 8 - 1938448 AT-GCTTTG- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2521557 8 + 5252280 GT-CTTCTG- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91410089 8 - 120129022 AT-GTTCTG- i mm10.chr12 I 1652 C 0 s canFam3.chr17 2025079 8 + 64289059 AT-GCTTCT- i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 547266 9 + 2232271 AT-GCTCCTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2631574 704 - 159902609 I e proCoq1.NW_012151163v1 944570 676 + 1238772 I a score=557257.000000 s hg38.chr2_KI270769v1_alt 38241 35 + 120616 ATTCTTCCTGAAATTAAATTGCATTGGTAAATGGA s panTro5.chr2A 3490550 35 + 111504155 ATTCTTCCTGAAATTAAATTGCATTGGTAAATGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3360743 35 + 114371477 ATTCTTCCTGAAATTAAATTGCATTGGTAAATGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 236387 35 + 637652 ATTCTTCCTGAAATTAAATTGCATTGGTAAATGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3031767 35 + 81552678 ATTCTTCCTGAAATTAAATTGCATTGGTAAATGGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3294271 35 + 108979918 ATTCTTCCTGAAATTAAATTGCACTGGTAAATGGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007030 35 - 111193037 ATTCTTCCTGAAATTAAATTGCACTGGTAAATGGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3401811 35 + 3644372 ATTCTTCCTGAAATTAAATTGCACTGGTAAATGGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3356428 35 - 10304083 ATTCTTCCTGAAATTAAATTGCACTGGTAAATGGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3439288 35 - 107702431 ATTCTTCCTGAAATTAAATTGCACTGGTAAATGGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984873 35 + 1565135 ATTCTTCCTGAAATTAAATTGCACTGGTAAATGGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345112 35 - 13651311 ATTCTTCCTGAAATTAAATTGCACTGGTAAATGGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3437831 35 - 108792865 ATTCTGCCTGAAATTAAATTGCATTGGTAAATGGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3092143 35 - 7082604 ATTCTGCCTGAAATTAAATTGCATTGGTAAATGGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 577834 35 + 5243153 ATTCTGCCTGAAATTAAATTGCATTGGAAAATGGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1913618 35 - 1938448 ATTCTGCCTGAAATTAAATTGCATTGGTAAATGGA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 945246 35 + 1238772 ATTCTGCCTGAAATTAAACTGCATTGGTAAGTGAG i proCoq1.NW_012151163v1 I 676 C 0 s otoGar3.GL873658 2521565 35 + 5252280 ATTCTGCCTGAAATTAAACTGCATCGGTTCGTGAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91410097 35 - 120129022 CTCCTGCCCGAAATTAAGTGGCACCTGGATGTGGA i mm10.chr12 C 0 C 0 s canFam3.chr17 2025088 35 + 64289059 ATTCCGCCTGAAATTAAATTGCACTGGGATCCAGA i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 547275 35 + 2232271 ATTCTGCCTGAAACTAAATTGCAATAGGATATGGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2631574 704 - 159902609 I a score=6568187.000000 s hg38.chr2_KI270769v1_alt 38276 379 + 120616 TAAAGAGAAGACAGCAGCTACGCATCATTGAGAAGCTAATTTAAATTATGAAATAGACATAAATCATAC--ATACA--TTTTAGCAAAAGCGTATTAACATT-CATCCTCAATAATATGCTGGATGTTTACTAATTTTTCTTCCCATTTTGT--GGTG-TAACAAAGCATAAATGTAAGATTTTGATTCATTCACTTCATTTTCGCTTGCAATATATAAGCAGAGCAAGTTGTTAAAATGTGCTTT-AAAA-GGAGGCTATAATTATAAA-----------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATTGG-GCGTAATTTTTGCCCATTCAGAATATTCATAACAAGACATGTAATGAATCATGTGTAAAAATCATGAAG-----------GTTTTTT--- s panTro5.chr2A 3490585 380 + 111504155 TAAAGAGAAGACAGCAGCTACGCATCATTGAGAAGCTAATTTAAATTATGAAATAGACATAAATCATAC--ATACA--TTTTAGCAAAAGCGTATTAACATT-CATCCTCAATAATATGCTGGATGTTTACTAATTTTTCTT-CCATTTTGTTAGGTG-TAACAAAGCATAAATGTAAGATTTTGATTCATTCACTTCATTTTCGCTTGCAATATATAAGCAGAGCAAGTTGTTTAAATGTGCTTT-AAAA-GGAGG-TATAATTATAAA-----------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATTGGTGCGTAATTTTTGCCCATTCAGAATATTCATAACAAGACATGTAATGAATCATGTGTAAAAATCATGAAG-----------GTTTTTT--- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3360778 379 + 114371477 TAAAGAGAAGACAGCAGCTACGCATCATTGAGAAGCTAATTTAAATTATGAAATAGACATAAATCATAC--ATACA--TTTTAGCAAAAGCGTATTAACATT-CATCCTCAATAATATGCTGGATGTTTACTAATTTTTCTTCCCATTTTGT--GGTG-TAACAAAGCATAAATGTAAGATTTTGATTCATTCACTTCATTTTCGCTTGCAATATATAAGCAGAGCAAGTTGTTAAAATGTGCTTT-AAAA-GGAGGCTATAATTATAAA-----------AACTTTTATGAATGAGCTTTAATATATTTCGTGTAAATATTGG-GCGTAATTTTTGCCCATTCAGAATATTCATAACAAGACATGTAATGAATCATGTGTAAAAATCATGAAG-----------GTTTTTT--- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 236422 379 + 637652 TAAAGAGAAGACAGCAGCTACGCATCATTGAGAAGCTAATTTAAATTATGAAATAGACATAAATCATAC--ATACA--TTTTAGCAAAAGTGTATTAACATT-CATCCTCAATAATACGCTGGATGTTTACTAATTTTTCTTCCCATTTTGT--GGTG-TAACAAAGCATAAATGTAAGATTTTGATTCATTCACTTCATTTTCACTTGCAATATATAAGCAAAGCAAGTTGTTAAAATGTGCTTG-AAAA-GGAGGCTATAATTATAAA-----------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATTGG-GCGTAATTTTTGTCCATTCAGAATATTCATGACAAGACATGTAATGAATCATGTGTAAAAATCATGAAG-----------GTTTTTT--- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3031802 378 + 81552678 TAAAGAGAAGATAGCAGCTACGCATCATTAAGCAGCTAATTTAAATTATGAAATAGACGTAAATCATAC--ATACA--TTTTAGCAAAAGTATATTAACATT-CATCCTCAATAATATGCTGGATGTTTACTAATTTTTCTTCCCATTTTGT--GGTG-TAACAAAGCGTAAATGTAAGATTTTGATTCATTCACTTCATTTTCGCTTGTAATATATAAGCAAAGCAAGTTGTTAAAATGTGCTTT-AAAA-GGAGGCTATAATTATAAA-----------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATTGG-GCGTAATTTTTGCCCATTCAGAATATTCATAACAAGACATGTAACGAATCATATGT-AAAATCATGAAG-----------GTTTTTA--- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3294306 382 + 108979918 TAAAGAGAAGATAGCAGCTACGCATCATTAAGCAGCTAATTTAAATTATGAAATAGACATAAATCATAC--ATACA--TTTTAGCAAAAGTGTATTAACATT-CATCCTCAATAATATGCTGGATGTTTACTAATTTTTCTTCCCATTTTGT--GGTG-TAACAAAGCATAAATGTAAGATTTTGATTCATTCACTTCATTTTAGCTTGCAATATATAAGCAAAGCAAGTTGTTAAAATGTGCTTT-AAAA-GGAGGCTATAATTATAAAAAC--------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATTGG-GCGTAATTTTTGCCCATTCAGAATATTCATAACAAGACATGTAATGAATCGTGTGTAAAAATCATGAAG-----------GTTTTTT--- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007065 382 - 111193037 TAAAGAGAAGATAGCAGCTACGCATCATTAAGCAGCTAATTTAAATTACGAAATAGACATAAATCATAC--ATACA--TTTTAGCAAAAGTGTATTAACATT-CATCCTCAATAATATGCTGGATGTTTACTAATTTTTCTTCCCATTTTGT--GGTG-TAACAAAGCATAAATGTAAGATTTTGATTCATTCACTTCATTTTAGCTTGCAATATATAAGCAAAGCAAGTTGTTAAAATGTGCTTT-AAAA-GGAGGCTATAATTATAAAAAC--------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATTGG-GCGTAATTTTTGCCCATTCAGAATATTCATAACAAGACATGTAATGAATCGTGTGTAAAAATCATGAAG-----------GTTTTTT--- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3401846 382 + 3644372 TAAAGAGAAGATAGCAGCTACGCATCATTAAGCAGCTAATTTAAATTATGAAATAGACATAAATCATAC--ATACA--TTTTAGCAAAAGTGTATTAACATT-CATCCTCAATAATATGCTGGATGTTTACTAATTTTTCTTCCCATTTTGT--GGTG-TAACAAAGCATAAATGTAAGATTTTGATTCATTCACTTCATTTTAGCTTGCAATATATAAGCAAAGCAAGTTGTTAAAATGTGCTTT-AAAA-GGAGGCTATAATTATAAAAAC--------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATTGG-GCGTAATTTTTGCCCATTCAGAATATTCATAACAAGACATGTAATGAATCGTGTGTAAAAATCATGAAG-----------GTTTTTT--- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3356463 382 - 10304083 TAAAGAGAAGATAGCAGCTACGCATCATTAAGCAGCTAATTTAAATTATGAAATAGACATAAATCTTAC--ATACA--TTTTAGCAAAAGTGTATTAACATT-CATCCTCAATAATATGCTGGATGTTTACTAATTTTTCTTCCCATTTTGT--GGTG-TAACAAAGCATAAATGTAAGATTTTGATTCATTCACTTCATTTTAGCTTGCAATATATAAGCAAAGCAAGTTGTTAAAATGTGCTTT-AAAA-GGAGGCTATAATTATAAAAAC--------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATTGG-GCGTAATTTTTGCCCATTCAGAATATTCATAACAAGACATGTAATGAATCGTGTGTAAAAATCATGAAG-----------GTTTTTT--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3439323 382 - 107702431 TAAAGAGAAGATAGCAGCTACGCATCATTAAGCAGCTAATTTAAATTATGAAATAGACATAAATCATAC--ATATA--TTTTAGCAAAAGTGTATTAACATT-CATCCTCAATAATATGCTGGATGTTTACTAATTTTTCTTCCCATTTTGT--GGTG-TAACAAAGCATAAATGTAAGATTTTGATTCATTCACTTCATTTTAGCTTGCAATATATAAGCAAAGCAAGTTGTTAAAATGTGCTTT-AAAA-GGAGGCTATAATTATAAAAAC--------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATTGG-GCGTAATTTTTGCCCATTCAGAATATTCATAACAAGACATGTAATGAATCGTGTGTAAAAATCATGAAG-----------GTTTTTT--- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 984908 382 + 1565135 TAAAGAGAAGATAGCAGCTACGCATCATTAAGCAGCTAATTTAAATTATGAAATAGACATAAATCTTAC--ATACA--TTTTAGCAAAAGTGTATTAACATT-CATCCTCAATAATATGCTGGATGTTTACTAATTTTTCTTCCCATTTTGT--GGTG-TAACAAAGCATAAATGTAAGATTTTGATTCATTCACTTCATTTTAGCTTGCAATATATAAGCAAAGCAAGTTGTTAAAATGTGCTTT-AAAA-GGAGGCTATAATTATAAAAAC--------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATTGG-GCGTAATTTTTGCCCATTCAGAATATTCATAACAAGACATGTAATGAATCGTGTGTAAAAATCATGAAG-----------GTTTTTT--- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345147 383 - 13651311 TAAAGAGAAGATAGCAGCTACGCATCATTAAGCAGCTAATTTAAATTATGAAATAGACATAAATCATAC--ATATA--TTTTAGCAAAAGTGTATTAACATT-CATCCTCAATAATATGCTGGATGTTTACTAATTTTTCTTCCCATTTTGT--GGTGTTAACAAAGCATAAATGTAAGATTTTGATTCATTCACTTCATTTTAGCTTGCAATATATAAGCAAAGCAAGTTGTTAAAATGTGCTTT-AAAA-GGAGGCTATAATTATAAAAAC--------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATTGG-GTGTAATTTTTGCCCATTCAGAATATTCATAACAAGACATGTAATGAATCATGTGTAAAAATCATGAAG-----------GTTTTTT--- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3437866 382 - 108792865 T--AGAGAAGATAGCAGCTACGCATCATTAAGCAGCTAATTTAAATTATGAGATAGACATACATCCTACGTATATA--TTTTAGCGAAAGTGTATTACCATT-CATTCTCAGAAATATGCTGGATGTTTACTCACTTTTCTTCCCATTTTGT--AGTG-TAACAAAGCATAAATGTAAGATTGTGATTCATTCACTTCATTTTAGCTTGCAATATATAAGCAAACCACGTTGTTAAAATGTGCTTT-AAAA-GGATGTCATAATGATAGAAAC--------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATTGG-GTGTAATTTTTGCCCATTCAGAATATTCATAACAAGACATGTAATGAATCGTGTGTAAAAATCATGAAG-----------GTTTTTT--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3092178 378 - 7082604 TAAAGAGAAGATAGCAGCTCCACATCATTAAGCAGCTAATTTAAATTATGAAATAGACATAAATCATGCATATATA--TTTTAGCAAAAGTGTATTAACATT-CATTCTCAAAAATATGCTGGATGTTTACTCATTTTTCTTCCCATTTTGT--AGTG-TAACAAAGCATAAATGTAAGATTTTGATGCATTCACTTCATTTTAGCTTGCAATATATAAGCAAACCAAGTTGTTAAAATGTGCTTT-AAAA-GTATGCTATAATGATAGA--------------TTTTATGAATGAGCTTTAATATATTTAATGTAAATATTGG-GTGTAATTTTTGCCCATTCAGAATATTCATAACAAGACATGTAATGCATCGTGTGTAAAAACCATGAAG-----------GTTTTTT--- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 577869 379 + 5243153 TAAAGAGAAGATAGCAGCTATGCATCATTAAGCAGCTAATTTAAATTATGAAATAGACATAAAT----CATATATA--TTTTAGCGAAA--GTATTAACATTCCATTCTCAAAAATATGCTGGATGTTTACTCATTTTTCTGCCCATTTTGT--AGTG-TAACAAAACATAAATGTAAGATTTTGATTCATTCACTTCATTTTAGCTTGCAATATATAAGCAAACCAAGTTGTTAAAATGTGCTTT-AAAA-GGATGCTATAATGATAGGAAC--------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATCAG-GTGTAATTTTTGCCCATTCAGAATATTCATAACAAAACATGTAATGAATCATGTGTAAAAATCATGAAG-----------GTTTTTT--- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1913653 384 - 1938448 TAAAGAGAAGATAGCAGCTATGCATCATTAAGCAGCTAATTTAAATTATGAAATAGACATAAATCATACATATATG--TTTTAGTGAAAGTGTATTAACATT-CATTCTCAAAAATATGCTGGATGTTTACTCATTTTTCTTCCCATTTTGT--AGTG-TAACAAAGCATAAATGTAAGATTTTGATTCATTCACTTCATTTTAGCTTGCAATATATAAGCAAACCAAGTTGTTAAAATGTGCTTT-AAAA-GGATGCTATTATGATAAAAAC--------AACTTTTATGAATGAGCTTTAATATATTTCATGTAAATATTGG-GTGTAATTTTTGCCCATTCAGAGTATTCATAACAAGACATGTAATGAATCGTGTGTAAAAATCATGAAG-----------GTTTTTT--- i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2632278 384 - 159902609 TAAAGAGAAGATAGTAGCTATGCATCATTAAGCAGCTAATTTAAATTATGAGATAGACATAAATCATAC--ATATGTTTTTTAGCTAAAGTGTATTAACATT-CATCCACAATAATATGCTGAATGTTTACTAATTCCTCTTCTCATTTTGT--GGTG-TAAC-AAGCATAAATGTAAGATTTTGATTCATTCATTTCATTTTAGCTGGCAATACAT----AAAGCAAGTCGTTAAAATGTGCTTTAAAAA-GGAGGCTATAATGATATAAAC----AAATAATTTTTATGAATGAGCTTTAATATATTTCATTTAAATATTGG-GCATAATTTTTACCCATTCAGAATATTCATAACAAGACACGTAATGAATCATGCGTAAAAATCATAAAG-----------TTTTTTT--- i micMur3.chr8 I 704 I 647 s proCoq1.NW_012151163v1 945281 383 + 1238772 TAAAGAGAAGATAGTAGCTATGCATCATTAAGCAGCTAATTTAAATTATGAGATAGACATAAATCATAC--ATATG--TTTTAGCTAAAGTGTATTAACATT-CATCCACAATAATACGCTGAATGTTTACTAAT---TCTTCTCATTTTGT--AGTG-TAAC-AAGCATAAATGTAAGATTTTGATTCATTCATTTCATTTTAGCTTGCAATACATAAGCAAAGCAAGTCGTTAAAATGTGCTTTAAAAA-GGAGGCTTTAACGACATAAAC----AAATAATTTTTATGAATGAGCTTTAATATATTTCATTTAAATATTGG-GCATAATTTTTACCCATTCAGAATATTCATAACAAGACATGTAATGAATTGTGGGTAAAAATCATAAAG-----------TTTTTTT--- i proCoq1.NW_012151163v1 C 0 I 604 s otoGar3.GL873658 2521600 383 + 5252280 TAAAGAGAAGGGAGTATCTGTGCATCATTAAGCAGCTAATTTAAATTAAGAAATGGGCATAAATCATAC--ATACG--CTTCAGCTAAAGTGTATTAACATT-CATCCACGACAACACGCTGAATGTTTGCTAAT---TCTTCTCATTTTGT--GGGG-TAAC-AAGCATAAATGTAGGATTTTGATTCATTCATTTAATTTTCACTTGCAACACTTAAACAAAGCAAGTTGTGAAAACGAGCTTCTAAAA-GGGGGCTGTGAGAATGTAAAC----AAATAATTTTTATGAATGACCTTTAATATATTTCATTTAAATATTGG-GCATAATTTTTACCCATTCAGAATATTTATAACAAGACCTACGATGAATCATGTGTAAAAATTATAAAG-----------GTTTTTT--- i otoGar3.GL873658 C 0 I 116 s mm10.chr12 91410132 376 - 120129022 TGAAGAGAAGACAGAAGCTGTGCATCATGAAGCAGCTATTTCAGATTATGAAATGGACATATATCATGC--ATGCT--------CAA----GTGTTAATATG-CATTCACGGTGATAGGCTGGATGCTGGCTAATGCTGCTTATCATTTTGT--GGCA-TTAC-AAGCATAAATGTAAGAAT-TGATTCATTCATTTCATTTTAGCTCACAATATATAAGCAAAGCAAACCATTAACATGTGCTTTTAAAA-GGGGGTTATAGTAATACAAACAAATAAATAACTTTTATGAATGAGCTTTAATATATTTCATTTAAG-ATTGG-GTA----TTATAGCAATTCATGATATTCATAACAAGACTTG--ATGAACTGTGTGTGGAGCTAATGAAG-------TTGAGTTTTTT--- i mm10.chr12 C 0 I 1 s canFam3.chr17 2025123 401 + 64289059 TAAAGAGACGACAGTAGCCATGCATCATTAAGCAGCTAATTTAAATTATGAAATAGACATAAATCATAC--ATACA--CTTTAGCTGTAGTGTGTTAACATT-CATCCACAGTGATATGCTGAATGTTTACTAATTTTTCTTCTCATTTTGT--GATG-TAAC-AAGCATAAATGTAAGATTTTGATTCATTCATTTCATTTTAGCTTGCAGTATATAAGCAAAGCAAGTCATTAAGATGTGCTTTAAAGA-GGAGGCTATGACAATATAAACAAATAAATAACTTTTATGAATGAGCTTTAATATATTCTATTTAAATATTGG-GCATAATTTTTACCCATTCACAATATTCATAGCAAAACATATAATGAATCATGAGTAAAAATCATGAAGCACTTTGTTTTGTTTTTT--- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 547310 389 + 2232271 TAAAGAGACGATAGCAGCTATGCATCATTAAGCAGCTAATTTAAATTATGAAACAGACATAAATCATAC--ACATA--TTTTAGCTAAAGTGTATTAACATT-CATCCACAATAATATGCTGAATGTTTACTAATTTTTCTTCTCATTTTGT--GCTG-TAAC-AAGAATGCATGTAAGATTTTGATTCATTCACTTCATTTTAGCTTGTAATATATAAACAATGCAAGTCATTAA-ATGTGCTTT-AAAATGGAGGTTATAATGATGCAAACAGATAAATAACTTTTATGAATGAGCtttaatatattttatttaaatat-GA-ACATAATTTTT-CCCATCCAGAATATTCTTAATAAGACATCTAATGAATCATGTTT-TAGATCATCAAG-----------TTTTTGGTTT i dasNov3.JH580157 C 0 C 0 a score=649834.000000 s hg38.chr2_KI270769v1_alt 38655 70 + 120616 A---AAAAAAA--------TTCATCCA--AGAAAGGAACAGTATTATGGT-TGATGTATTTACATGTCAAATCTAGCAATTTCA- s panTro5.chr2A 3490965 71 + 111504155 A---AAAAAAA---------TCATCCAACAGAAAGGAACAGTATTATGGT-TGATGTATTTACATGTCAAATCTAGCAATTTCA- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3361157 69 + 114371477 A---AAAAAAT---------TCATCCA--AGAAAGGAACAGTATTATGGT-TGATGTATTTACATGTCAAATCTAGCAATTTCA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 236801 71 + 637652 T---AAAAAAAA-------TTCATCCA--AAAAAGGAACAGTATTATGGT-TGATGTATTTACATGTCAAATCTAGCAATTTCA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032180 70 + 81552678 A---AAAAAAA--------TTCATCCA--AGAAAGGAACAGTATTATGGT-TGATGTATTCACATGTCATATCTAGCAATTTCA- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3294688 70 + 108979918 A---AAAAAAA--------TTCATCCA--AGAAGGGAACAGTATTATGGT-TGATGTATTTATGTGTCATATCTCGCAATTTCA- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007447 70 - 111193037 A---AAAAAAA--------TTCATCCA--AGAAGGGAACAGTATTATGGT-TGATGTATTTATGTGTCATATCTCGCAATTTCA- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402228 70 + 3644372 A---AAAAAAA--------TTCATCCA--AGAAGGGAACAGTATTATGGT-TGATGTATTTATGTGTCATATCTCGCAATTTCA- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3356845 70 - 10304083 T---TAAAAAA--------TTCATCCA--AGAAGGGAACAGTATTATGGT-TGATGTATTTATGTGTCATATCTCGCAATTTCA- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3439705 70 - 107702431 T---AAAATAA--------TTCATCCA--AGAAGGGAACAGTATTATGGT-TGATGTATTTATGTGTCATATCTCGCAATTTCA- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 985290 70 + 1565135 T---AAAAAAA--------TTCATCCA--AGAAGGGAACAGTATTATGGT-TGATGTATTTATGTGTCATATCTCGCAATTTCA- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345530 70 - 13651311 T---GAAAAAA--------TTCATCCA--AGAAGGGAACAGTATTATGGT-TGATGTATTTATATGTCATATCTGGCAATTTCA- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3438248 65 - 108792865 TTTTAAAAAAA--------TTCAACCA--AGAAAGGAACAGTATTATGGT-TGATGTGTT----TGTCATTTCTAGCAAT----- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3092556 69 - 7082604 TTAAAAAAAAA--------TTCAACCA--AGAAAGAAACAGTATTACGGT-TGATGTGTTTATATGTCATTTCTAGCAAT----- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 578248 66 + 5243153 T---AAAAAAA--------TTCAACCA--AGAAAGGAACAGTATTATGGT-TGATGAGTTTATATGTCATTTCTAGCAAT----- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914037 66 - 1938448 T---TAAAAAT--------TTCAACCA--AGAAAGGAACAGTATTATGGT-TGATGTGTTTATATGTCATTTCTAGCAAT----- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2522099 69 + 5252280 T---TTAAATT--------TTCATTCA--AGACAGGAACAGTATTGTAGC-TGATACATTTCTCTGATATTTCTA-CAATTTCA- i otoGar3.GL873658 I 116 C 0 s mm10.chr12 91410509 69 - 120129022 -----------GTTTGTTTTTCATTCA--TAAAAGGGACAATGCTGTATT-TGATATATTTCTAGAACAT-TTAAGCAGTTTCT- i mm10.chr12 I 1 C 0 s canFam3.chr17 2025524 68 + 64289059 ------AAGTT--------TTCATCTG--GAAAAGGAACAGCATTGTGGTCTGATACATATCTCCAGCATGTCTCACAGTTTCA- i canFam3.chr17 C 0 I 113 s dasNov3.JH580157 547699 65 + 2232271 -ATTTTAAGTT--------TTCATCCA--AAAAAG---------CATGGTTTTATATATTTCTCCGACATTTCTAGCAATTGTTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2632662 647 - 159902609 I e proCoq1.NW_012151163v1 945664 604 + 1238772 I a score=451606.000000 s hg38.chr2_KI270769v1_alt 38725 64 + 120616 GTCAGTTCCTTTCAGCCACCCCCAA--------AGCCC----AGC----CCCGTTT-CTGA--CCC-TGGCGCTG---TGTCTTTCA-- s panTro5.chr2A 3491036 64 + 111504155 GTCAGTTCC-TTCAGCCACCCCCAA--------AGCCC----AG-----CCCGTTT-CTGA--CCC-TGG-GCTGCGTTGTCTTTCA-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3361226 64 + 114371477 GTCAGTTCCTTTCAGCCACCCCCAA--------AGCCC----AGC----CCCGTTT-CTGA--CCC-TGGCGCTG---TGTCTTTCA-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 236872 64 + 637652 GTCAGTTACTTTCAGCCACCCCCAA--------AGCCC----AGC----CTCGTTT-CTGA--CCC-TGGCGCTG---TGTCTTTCA-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032250 63 + 81552678 GTCAGTTACTTTCAGCCACCCCC-A--------AGCCC----AAC----CCCGTTT-CTGA--CCC-TGGCTCTG---TGTCTTTCA-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3294758 62 + 108979918 GTCAGTTGCTTTCAGCCCCCCCCAA--------AGCCC----AGC----CCCATTT-CTGA--CCC-TAGTGC-----TGTCTTTCT-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007517 62 - 111193037 GTCAGTTGCTTTCAGCCCCCCCCAA--------AGCCC----AGC----CCCATTT-CTGA--CCC-TAGTGC-----TGTCTTTCT-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402298 62 + 3644372 GTCAGTTGCTTTCAGCCCCCCCCAA--------AGCCC----AGC----CCCATTT-CTGA--CCC-TAGTGC-----TGTCTTTCT-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3356915 62 - 10304083 GTCAGTTGCTTTCAGCACCCCTCAA--------AGCCC----AGC----CCCATTT-CTGA--CCC-TAGTGC-----TGTCTTTCT-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3439775 62 - 107702431 GTCAGTTGCTTTCAGCACCCCCCAA--------AGCCC----AGC----CCCATTT-CTGA--CCC-TAGCGC-----TGTCTTTCA-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 985360 62 + 1565135 GTCAGTTGCTTTCAGCACCCCTCAA--------AGCCC----AGC----CCCATTT-CTGA--CCC-TAGTGC-----TGTCTTTCT-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345600 62 - 13651311 GTCAGTTGCTTTCAGCCACCCCCAA--------AGCCC----AGC----CCCGATT-CTGA--CCC-TAGTGC-----TGTCTTTCA-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3438313 51 - 108792865 ----------TTCAGCCACCTCCAA--------AGCCC----A-C----CCCATTT-CTGA--CCC-TGGCAC-----TGTCTTTCA-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3092625 51 - 7082604 ----------TTCAGCCACCTCCAA--------AGCTC----A-C----CCCATTT-CTGA--CCC-TGGCAC-----TGTCTTTCA-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 578314 51 + 5243153 ----------TTCAGCCACCTCCAA--------AGCTC----A-C----GCCATTT-CTGA--CCC-TGGCAC-----TGTCTTTCA-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914103 51 - 1938448 ----------TTCAGCCACCTCCAA--------AGCCC----A-G----CCCATTT-CTGA--CCC-TGGCAC-----TGTCTTTCA-- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2522168 72 + 5252280 GTCAATTTTTTACAGCTTCCCTCAAAAAATAAGAGGAC----GGG----TCTGCTT-CCCAATACT-TATCAC-----CGTGTTTTA-- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91410578 59 - 120129022 ATCCAATG--TTCAGCTGTTCTGCA--------AGTCCCATTAGC----TTTGTCTACTGA--CCCTTAGCCC------------CA-- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 547764 70 + 2232271 TGTACTTACTTTCAGGCTTTCTTAA--------ATGAC----AGCTAGATTTGTTT-CTAGTCCCC-CACCGt-----tgtctttttta i dasNov3.JH580157 C 0 I 961 e micMur3.chr8 2632662 647 - 159902609 I e canFam3.chr17 2025592 113 + 64289059 I e proCoq1.NW_012151163v1 945664 604 + 1238772 I a score=557837.000000 s hg38.chr2_KI270769v1_alt 38789 77 + 120616 CTTGGT----TGTTTGG-AGACTCCCTCCTGCACACAGGAAGAATCCCGA-GGACTACGGGCCTGGGGCCGACCCAG--------------------------CCCCGC s panTro5.chr2A 3491100 74 + 111504155 CTTGGT----TGTTTGG-ACGCTCCCTCCTGCACACAGG-AGAATCCCGAGGGACTACGG--CTGGGGCCGACCCAG---------------------------CCCGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3361290 77 + 114371477 CTTGGT----TGTTTGG-ACGCTCCCTCCTGCACACAGGAAGAATCCCGA-GGACTACGGGCCTGGGGCCGACCCAG--------------------------CCCCGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 236936 103 + 637652 CTTGGT----TGTTTGG-ACGCTCCCTCCTGCACACAAGAAGAATCCCGA-GGACTACGGGCCTGGGGCCGACCCAGCCCCGCACCCCCTGGAGCCGACCCAGCCCCGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032313 76 + 81552678 CTTGGT----GGTTTGG-ACGCTGTCTCCTGCGC-CAGGAAGAATCCCGA-GGACTATGGGCCTGGGGCCGACCCGG--------------------------CCCCGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3294820 76 + 108979918 CTTGGT----TGTCTGG-ACGCTCCCTCCTGCGCACGGGAAGAATCCTCA-GGAC-ACAGTCATGGGGCCCACCCAG--------------------------CCCTGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007579 76 - 111193037 CTTGGT----TGTCTGG-ACGCTCCCTCCTGCGCACGGGAAGAATCCTCA-GGAC-ACAGTCATGGGGCCCACCCAG--------------------------CCCTGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402360 76 + 3644372 CTTGGT----TGTCTGG-ACGCTCCCTCCTGCACACGGGAAGAATCCTCA-GGAC-ACAGTCATGGGGCCCACCCAG--------------------------CCCTGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3356977 77 - 10304083 CTTGGT----TGTCTGG-ACGCTCCCTCCTGCGCACGGGAAGAATCCTCA-GGACTATGGTCATGGGGCCCACCCAG--------------------------CCCTGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3439837 77 - 107702431 CTTGGT----TGGTTGG-ATGCTCCCTCCTGCGCACGGGAAAAATCCTGA-GGACTACAGTCATGGGGCCCACCCAG--------------------------CCCCGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 985422 77 + 1565135 CTTGGT----TGTCTGG-ACGCTCCCTCCTGCGCACGGGAAGAATCCTCA-GGACTATGGTCATGGGGCCCACCCAG--------------------------CCCTGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345662 77 - 13651311 CCTGGT----TGTTTGG-ACGCTCCCTCCTGCACACGGGAAGAATCCTGA-GGACTACGGTCATGAGGCCGACCCAG--------------------------CCCCGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3438364 39 - 108792865 CTTGGT----TGTTTGG-ACGCTCCCTCCTATGTA---------------------------------------CAG--------------------------CTCCAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3092676 76 - 7082604 CTTGAT----TGTTTGG-ACACTCCCTCCTGTGCACAGGAAGAGTGCCTA-GGACGACGGGCA-GGGGCTGACCCAG--------------------------CCCCGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 578365 76 + 5243153 CTTGGT----TGTTTGG-ACGCTCCTTCCTGTGCACAGGAAGACTGCCGA-GGACGATGGGCA-GGGGCTGAACCAG--------------------------CCCCAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914154 76 - 1938448 CTTGGT----TGTTCGG-ATGCTCCCTCCTGTGCACAGGAAGAGTGCCGA-GGATGACGGGCA-GGGGCTGACCCAG--------------------------CCCCGC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2522240 78 + 5252280 GTTAGT----TGTTTGGAATCCTGCCTCCTGTCCCCAGAAGGATCAGGGA-GGACAGGGAGCACGGAGTAGGCCCAG--------------------------CTCAGC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91410637 71 - 120129022 CTTGGTCTACTGTGCAG-AGTTCTCTTCTTGCTCAT-GGAGCAGCAAGGA-GGAC---------AGAGTTCAGGCAG--------------------------CACAGC i mm10.chr12 C 0 C 0 e micMur3.chr8 2632662 647 - 159902609 I e canFam3.chr17 2025592 113 + 64289059 I e proCoq1.NW_012151163v1 945664 604 + 1238772 I e dasNov3.JH580157 547834 961 + 2232271 I a score=85510.000000 s hg38.chr2_KI270769v1_alt 38866 10 + 120616 GCCCCCGGAG s panTro5.chr2A 3491174 9 + 111504155 G-CCCCGGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3361367 10 + 114371477 GCCCCCGGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237039 10 + 637652 GCCCCCAGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032389 10 + 81552678 GCCCCCGCAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3294896 10 + 108979918 GCCCCCGGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007655 10 - 111193037 GCCCCCGGAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402436 10 + 3644372 ACCCCCGGAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357054 10 - 10304083 GCCCCCAGAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3439914 10 - 107702431 GCCCCCGGAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 985499 10 + 1565135 GCCCCCGGAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345739 9 - 13651311 -CCCCCGGAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3438403 10 - 108792865 GCCCTTGGAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3092752 10 - 7082604 ACCGCCGGAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 578441 10 + 5243153 GCCCCTAGAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914230 10 - 1938448 TCTCCCGGAG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2522318 9 + 5252280 GACCCAAG-G i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2025705 10 + 64289059 gctccctgcg i canFam3.chr17 I 113 C 0 e micMur3.chr8 2632662 647 - 159902609 I e mm10.chr12 91410708 0 - 120129022 C e proCoq1.NW_012151163v1 945664 604 + 1238772 I e dasNov3.JH580157 547834 961 + 2232271 I a score=1861836.000000 s hg38.chr2_KI270769v1_alt 38876 199 + 120616 CTGAGGTCTGTG-CGGTTCT----------------GGGTGGGGCCCCCAA--AGCCAC-AAGAAGCCCA-GGTAGCACTGACTC-TGACC-----------------TGGGTGTCCTC-TCTTGATT--------------------TTCCTTTCTTGCTC---------CTCAATCTCCACCCCCTT--TTCCTCTG---TTCCTCTTCTACTG-CATTCGTTGCTTCTTCCCCTCT-CAGACCCTACATCC--ATCCCTAGAACCCAGGGCCCA s panTro5.chr2A 3491183 199 + 111504155 CTGAGGTCTGTGCCGGTTCT----------------GGGTGG---CCCCAA--A-CCAC-AAGAAGCCCAGGGTAGCACTGACTCTTGACC-----------------TGGGTGTCCTC-TCTTGATT--------------------TTCCTTTCTTGCT----------CTCAATCTCCATCCCCTT--TTCCTCTG---TTCCTCTTCTACTGCCATTCATTGCTTCTTCCCCTCTGCAGACCCTACATCC--ATCCCTAGAACCCAGGGCCCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3361377 199 + 114371477 CTGAGGTCTGTG-CGGTTCT----------------GGGTGGGGCCCCCAA--AGCCAC-AAGAAGCCCA-GGTAGCACTGACTC-TGACC-----------------TGGGTGTCCTC-TCTTGATT--------------------TTCCTTTCTTGCTC---------CTCAATCTCCATCCCCTT--TTCCTCTG---TTCCTCTTCTACTG-CATTCATTGCTTCTTCCCCTCT-CAGACCCTACATCC--ATCCCTAGAACCCAGGGCCCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237049 199 + 637652 CTGAGGTCTGTG-CGGTTCT----------------GGGTGGGGCCCCCAA--AGCCAC-AAGAAGCCCA-GGTAGCACTGACTC-TGACC-----------------TGGGTATCCTC-TCTTGATT--------------------TTCCTTTCTTGCTC---------CTCAATCTCCACCTCCTT--TTCCTCTG---TTCCTCTTCTACTG-CATTCATTGCTTCTTCCCCTCT-CAGACCCTACATCC--ATCCCTAGAACCCAGGGCCCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032399 199 + 81552678 CTGAGGTCTGTG-CGGTTCT----------------GGGTGGGGCCCCCAA--AGCCAA-AAGAAGCCCA-GGCAGCACTGACTC-TGACC-----------------TGGGTGTCCTC-TCTTGATT--------------------TTTATTTCTTGCTC---------ATCAATCTCCACCCCCTT--TTCCTCTG---TTCCTCTTCTACTG-CATTCATTGCTTCTTCCCCTCT-CAGACCCTACATCC--ATCCCTAGAACCCAGGGCCCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3294906 198 + 108979918 CTGAGGTCTGTG-CGGTTCT----------------GGGTGGGACCCCCAA--AACCAC-AAGAAGCCCA-GATAGCGCTGACTC-TGACC-----------------TGGGTGTCCTC-TCTTTATC--------------------TTCCTTTCTTGCTC---------CTCAATCTCCACCCCC-T--TTCCTCTG---TTCCTCTTCTACTG-CATTCATTGCTTCTTCCCCTCT-CAGACCCTACGCCC--ATCCCTAGAACCCAGGGCCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007665 199 - 111193037 CTGAGGTCTGTG-CGGTTCT----------------GGGTGGGACCCCCAA--AACCAC-AAGAAGCCCA-GATAGCACTGACTC-TGACC-----------------TGGGTGTCCTC-TCTTTATC--------------------TTCCTTTCTTGCTC---------CTCAATCTCCACCCCCTT--TTCCTCTG---TTCCTCTTCTACTG-CATTCATTGCTTCTTCCCCTCT-CAGACCCTACGCCC--ATCCCTAGAACCCAGGGCCCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402446 199 + 3644372 CTGAGGTCTGTG-CGGTTCT----------------GGGTGGGACCCCCAA--AACCAC-AAGAAGCCCA-GATAGCACTGACTC-TGACC-----------------TGGGTGTCCTC-TCTTTATC--------------------TTCCTTTCTTGCTC---------CTCAATCTCCACCCCCTT--TTCCTCTG---TTCCTCTTCTACTG-CATTCATTGCTTCTTCCCCTCT-CAGACCCTACGCCC--ATCCCTAGAACCCAGGGCCCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357064 199 - 10304083 CTGAGGTCTGTG-CGGTTCT----------------GGGTGGGACCCCCAA--AACCAC-AAGAAGCCCA-GATAGCACTGACTC-TGACC-----------------TGGGTGTCCTC-TCTTTATC--------------------TTCCTTTCTTGCTC---------CTCAATCTCCACCCCCTT--TTCCTCTG---TTCCTCTTCTACTG-CATTCATTGCTTCTTCCCCCCT-CAGACCCTACGCCC--ATCCCTAGAACCCAGGGCCCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3439924 199 - 107702431 CTGAGGTCTGTG-CGGTTCT----------------GGGTGGGACCCCCAA--AACCAC-AAGAAGCCCA-GATAGCACTGACTC-TGACC-----------------TGGGTGTCCTC-TCTTTATC--------------------TTCCTTTCTTGCTC---------CTCAATCTCCACCCCCTT--TTCCTCTG---TTCCTCTTCTACTG-CATTCATTGCTTCTTCCCCTCT-CAGACCCTATGCCC--ATCCCTAGAACCCAGGGCCCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 985509 199 + 1565135 CTGAGGTCTGTG-CGGTTCT----------------GGGTGGGACCCCCAA--AACCAC-AAGAAGCCCA-GATAGCACTGACTC-TGACC-----------------TGGGTGTCCTC-TCTTTATC--------------------TTCCTTTCTTGCTC---------CTCAATCTCCACCCCCTT--TTCCTCTG---TTCCTCTTCTACTG-CATTCATTGCTTCTTCCCCCCT-CAGACCCTACGCCC--ATCCCTAGAACCCAGGGCCCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345748 199 - 13651311 CTGAGGTCTGTG-CGGTTCT----------------GGGTGGGACCCCCAA--AACCAC-AAGAAGCCCA-GATAGCACTGACTC-TGACC-----------------TGGGTGTCCTC-TCTTTATC--------------------TTCCTTTCTTGCTC---------CTCAATCTCCACCTCCTT--TTCCTCTG---TTCCTCTTCTACTG-CATTCATTGCTTCTTCCCCTCT-CAGACCCTACGCCC--ATCCCCAGAACCCAGGGCCCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3438413 193 - 108792865 CTGAGGTCTGGA-TGGTTCT----------------GGGTGGGACCCCCAA--AGCTAC-AGGAAG-CCA-GGTAGCACTGCTGC-TTACC-----------------TGAGCGTCCTC-TCT--AT---------------------TTCCTTCCTTGCTC---------CTCAATCTCCACCCTCTT--TTC--CTG---TTCCTCTTCTACTG-CACTCATTGTTTCTTCTCCTCT-CAAACCACACATCT--CTCCCTAGCACCCAGGGCCCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3092762 195 - 7082604 CTGAGGTCCAGA-CGGTTCT----------------GGGTGGGACCCACAA--AGCCAC-AAGAAG-CCA-GGTAGCACTGCTGC-TTACC-----------------TAAGCGTCCTC-TCTTAAT---------------------TTCCTTCCTTGCTC---------CTCAATCTCCACCCCCTT--TTC--CTG---TTCCTCTTCCACTG-CATTCATTGTTTCTTCCCCTCT-CAGACCCCACGTCC--ATCCCAAGCACCCAGGGCCTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 578451 195 + 5243153 CTGAGGTCTGGA-CGGCTCT----------------GGGTGGGACCCCCAA--AGCCAC-AAGAAG-CCA-GGTAGCACTGCTGC-TTACC-----------------TGAGAGTCCTC-TCTTTAT---------------------TTCCTTCCTTGCTC---------CTCAATCCCCACCCCCTT--TTC--CTG---TTCCTCTTCCACTG-CATTCATTGTTTCTTCCCCTCT-CAGACCCCACATCC--ATCCCGAGCACCCAGGGCCCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914240 194 - 1938448 CTGAGGTCTGGA-TGGTTCT-----------------GGTGGGACCCCCAA--AGCCAC-AAGAAG-CCA-GGTAGCACTGCCGC-TTACC-----------------TGAGTGTCCTC-TCTTTAT---------------------TTCCTTCCTGGCTC---------CTCAATCTTCACCCCCTT--TTC--CTG---TTCCTCTTCCACTG-CATTCATTGTTTCTTCCCCTCT-CACACCCCACATCC--ATCCCTAGCACCCAGGGCCCA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2522327 107 + 5252280 CTGAGGTCGGAG-CTG----------------------------------------------------CA----------------TGA---------------------GGTGCCCTG-TCTCCATT--------------------GTCCCTGCT-----------------------------CAT--CTCCTCTG---CTCCTCTCTTCACT-CTGTCCCTGGCTCATCCCCCCT-CGT-----------------------CCCAGGGCCCA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91410708 123 - 120129022 -------------C-----------------------------------------------------CCA-----GCATTCACAG-TGTCC-----------------TG--------------------------------------------------Tc---------ctctgccctctgccctct--gccctctgGGCCTGCTCTCCCACCA-CACTTACTGCTCTTGCCCTGCC-AAGGCTGCATGTCC--CTCCCCAGCACTGAGGGCCCA i mm10.chr12 C 0 I 3057 s canFam3.chr17 2025715 256 + 64289059 aggagctcaatg-caggactcaatcccaggaccctgggatcatgccctcagccaaccactgagccaccca-ggt-gcccTGAAAC-TAAGCAATTCTTATAATCAGTTTGAATTCTCCC-TCTTGCTCAGAAGACGGAACAGCAGCGAGTGCTGCGCTGCCCCAGGCTGAACCCTGTCCCTCCGTCTCT--GTCTTCTG---CACCTCCCC---TG-CTCTTACTGCTTCCTCCCTTGT-GAGGCCATACGTCT--GTCCCTGTCCCGCAGAG---- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 548795 211 + 2232271 CTGTGTTCTGAG-AGCTTTG----------------GAGGGGGATTCACAC--AACCAC-AAAAGGCCTG-AGAAGCACCGGCTT-GGACC-----------------TGGCTGttcttgtctttattcttttctt------------ttcctttcttgttt---------ctcagtctcttttctttttcttcttctc---cttttcttCCATTC-CATTTATTGCTTCTTC-CTTCT-TATCCTGTATATACATATCTCAAGAATTCAGGGCCCA i dasNov3.JH580157 I 961 I 3516 e micMur3.chr8 2632662 647 - 159902609 I e proCoq1.NW_012151163v1 945664 604 + 1238772 I a score=29160.000000 s hg38.chr2_KI270769v1_alt 39075 3 + 120616 GCT s panTro5.chr2A 3491382 3 + 111504155 GCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3361576 3 + 114371477 GCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237248 3 + 637652 GCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032598 3 + 81552678 GCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295104 3 + 108979918 GCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007864 3 - 111193037 GCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402645 3 + 3644372 GCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357263 3 - 10304083 GCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440123 3 - 107702431 GCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 985708 3 + 1565135 GCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345947 3 - 13651311 GCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3438606 3 - 108792865 GCT i calJac3.chr14 C 0 I 1038 s saiBol1.JH378218 3092957 3 - 7082604 Gct i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 578646 3 + 5243153 GCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914434 3 - 1938448 Gct i aotNan1.NW_018507213v1 C 0 I 16 s otoGar3.GL873658 2522434 1 + 5252280 G-- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2632662 647 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e canFam3.chr17 2025971 0 + 64289059 C e proCoq1.NW_012151163v1 945664 604 + 1238772 I e dasNov3.JH580157 549006 3516 + 2232271 I a score=29188.000000 s hg38.chr2_KI270769v1_alt 39078 4 + 120616 TCAT s panTro5.chr2A 3491385 4 + 111504155 TCAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3361579 4 + 114371477 TCAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237251 4 + 637652 TCAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032601 4 + 81552678 TCAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295107 4 + 108979918 TCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007867 4 - 111193037 TCCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402648 4 + 3644372 TCCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357266 4 - 10304083 TCCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440126 4 - 107702431 TCCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 985711 4 + 1565135 TCCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345950 4 - 13651311 TCAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3439647 4 - 108792865 TCAT i calJac3.chr14 I 1038 C 0 s saiBol1.JH378218 3092960 4 - 7082604 ccat i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 578649 4 + 5243153 CCAT i cebCap1.NW_016107454v1 C 0 I 1045 s aotNan1.NW_018507213v1 1914453 4 - 1938448 tcat i aotNan1.NW_018507213v1 I 16 I 16 e micMur3.chr8 2632662 647 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e canFam3.chr17 2025971 0 + 64289059 C e proCoq1.NW_012151163v1 945664 604 + 1238772 I e dasNov3.JH580157 549006 3516 + 2232271 I e otoGar3.GL873658 2522435 0 + 5252280 C a score=111696.000000 s hg38.chr2_KI270769v1_alt 39082 14 + 120616 CCATCCCCAGCACC s panTro5.chr2A 3491389 14 + 111504155 CCATCCCCAGAACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3361583 14 + 114371477 CCATCCCCAGAACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237255 14 + 637652 CCATCCCCAGAACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032605 14 + 81552678 CCATCCCCAGAACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295111 14 + 108979918 CCATCCCCAGAACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007871 14 - 111193037 CCATCCCCAGAACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402652 14 + 3644372 CCATCCCCAGAACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357270 14 - 10304083 CCATCCCCAGAACC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440130 14 - 107702431 CCATCCCCAGAACC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 985715 14 + 1565135 CCATCCCCAGAACC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345954 14 - 13651311 CCGTCCCCAGAACC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3439651 14 - 108792865 TCATCCCTAGCACA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3092964 14 - 7082604 ccctccccagctcc i saiBol1.JH378218 C 0 I 558 s aotNan1.NW_018507213v1 1914473 14 - 1938448 ccctccctagctcc i aotNan1.NW_018507213v1 I 16 I 32 s canFam3.chr17 2025971 6 + 64289059 ----CCCCAG---- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2632662 647 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 945664 604 + 1238772 I e dasNov3.JH580157 549006 3516 + 2232271 I e otoGar3.GL873658 2522435 0 + 5252280 C e cebCap1.NW_016107454v1 578653 1045 + 5243153 I a score=68018.000000 s hg38.chr2_KI270769v1_alt 39096 15 + 120616 CAGGCTGCAAGCG-GG s panTro5.chr2A 3491403 14 + 111504155 --AGCCGCAAGCGTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3361597 15 + 114371477 CAGGCCGCAAGCG-GT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237269 15 + 637652 CAGGCCGCAAGCA-GT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032619 15 + 81552678 CAGGCCGCAAGCG-GT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295125 15 + 108979918 CAGGCCGCAGGCG-GT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007885 15 - 111193037 CAGGCCGCAGGCT-TT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402666 15 + 3644372 CAGGCTGCAGGCG-GT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357284 15 - 10304083 CAGGCCGCAGGCG-GT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440144 15 - 107702431 CAGGCCACAGGCG-GT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 985729 15 + 1565135 CAGGCCGCAGGCG-GT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345968 15 - 13651311 CAGGCCGCAGGCG-GT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3439665 15 - 108792865 CAGGTTCCAGGAG-CG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3093536 15 - 7082604 CAGGTTCCAGGAG-CG i saiBol1.JH378218 I 558 C 0 s aotNan1.NW_018507213v1 1914519 14 - 1938448 CAGGTTCCAGGAG-C- i aotNan1.NW_018507213v1 I 32 C 0 s canFam3.chr17 2025977 5 + 64289059 -AGGCT---------- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2632662 647 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 945664 604 + 1238772 I e dasNov3.JH580157 549006 3516 + 2232271 I e otoGar3.GL873658 2522435 0 + 5252280 C e cebCap1.NW_016107454v1 578653 1045 + 5243153 I a score=27285.000000 s hg38.chr2_KI270769v1_alt 39111 8 + 120616 AGAGGT-G-G s panTro5.chr2A 3491417 9 + 111504155 AGAGGT-GTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3361612 8 + 114371477 AGAGGT-G-G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237284 8 + 637652 AGAGGT-G-G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032634 8 + 81552678 GGAGGT-G-G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295140 7 + 108979918 GGA-GT-G-G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007900 7 - 111193037 GGA-GT-G-G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402681 7 + 3644372 GGA-GT-G-G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357299 7 - 10304083 GGA-GT-G-G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440159 7 - 107702431 GGA-GT-G-A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 985744 7 + 1565135 GGA-GT-G-G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345983 7 - 13651311 GGA-GT-G-G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3439680 7 - 108792865 -GAGTT-G-G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3093551 7 - 7082604 -GAGTT-G-G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 579698 8 + 5243153 AGAGTT-G-G i cebCap1.NW_016107454v1 I 1045 C 0 s aotNan1.NW_018507213v1 1914533 8 - 1938448 AGAGTT-G-G i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2522435 8 + 5252280 -GAGGTAG-G i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2025982 7 + 64289059 -GGGTT-A-G i canFam3.chr17 C 0 C 0 e micMur3.chr8 2632662 647 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 945664 604 + 1238772 I e dasNov3.JH580157 549006 3516 + 2232271 I a score=2313744.000000 s hg38.chr2_KI270769v1_alt 39119 222 + 120616 AAGCTGCTTGCATCAAGCCTTTTATCAGAGTTCCTTTCGTGGGTTGTGGGGTAGTCATTGAAAGC-TCACATTT-GTGTTTAGAAGCCA---ACTGGCTGGGGGTTGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGAAGTCCTCTGTGTCCCTGCAGGACACACTTAAAGACTGTG-----TGGCTTT-AGCTCCCTCAGACTTCACACAT--------AACTTGGCAACTGAGCTG s panTro5.chr2A 3491426 226 + 111504155 AAGCTGCTTGCATCAAGCCTTTTATCAGAGTTCTTTTCGTGGGTTGTGGGGTAGTCATTGAAAGCTTCACATTT-GTGTTTAGAAGCCACAGCCTGGCT---GGTTGTGAGCAGATTGTCCAA-CATCTTTTGCATTCACTGGAAGTCCTCTGTATTCCTGCA-GACACACTTAA--GCTGTGCTAGTTGACTTTAAGCTCCCTCAGACTTCACACAT--------AACT--GGAACTGAGCTG i panTro5.chr2A C 0 I 37 s panPan2.chr2A 3361620 222 + 114371477 AAGCTGCTTGCATCAAGCCTTTTATCAGAGTTCTTTTCGTGGGTTGTGGGGTAGTCATTGAAAGC-TCACATTT-GTGTTTAGAAGCCA---ACTGGCTGGGGGTTGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGAAGTCCTCTGTATCCCTGCAGGACACACTTAAAGACTGTG-----TGACTTT-AGCTCCCTCAGACTTCACACAT--------AACTTGGCAACTGAGCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237292 222 + 637652 AAGCTGCTTGCATCAAGCCTTTTATCAGAGTTCTTTTCGTGGGTTGTGGGGTAGTCATTGAAAGC-TCACATTT-GTGTTTAGAAGCCA---GCTGGCTGGGGGTTGTGAGCAGATTTTCC-A-CATCTTTT-CATTCACTGGAAGTCCTCTGTGTCCCTGCAGGACACACTTAAAGACTGTG-----TGGCTTT-AGCTCCCTCAGACTTCACACAT--------AACTTGGCAACTGAGCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032642 222 + 81552678 AAGCTGCTTGCATCAAGCCTTTTATCAGAGTTCATTTCGTGGGTTGTGGGGGAGTCACTGAAAGC-TCACATTT-GTGTTTAGAAGCCA---ACTGGCTGGGGGTTGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGACGTCCTCTGTGTCCCTGCAGGACACACTTCAAGACTGTG-----TGGCTTT-AGCTCCCTCAGACTTCACACAT--------AACTTGGCAACTGAGCTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295147 222 + 108979918 AAGCTGCTTGCATCAAGCCTTTTGTCGCAGTTCATTTCATGGGTTGTGGGGCAGTCATTGAAAGC-TCAGATTT-GTGTTCAGAAGCCA---ACTGGCTGGGGGTTGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGAAGTCCTCTGTGTCCCTGCAGGACACACTTAAAGACTGTG-----TGGCTTT-AGTTCCCTGAGACTTCACACAT--------AACTTGGCAACTGAGCTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5007907 222 - 111193037 AAGCTGCTTGCATCAAGCCTTTTGTCGCAGTTCATTTCATGGGTTGTGGGGCAGTCATTGAAAGC-TCAGATTT-GTGTTCAGAAGCCA---ACTGGCTGGGGGTTGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGAAGTCCTCTGTGTCCCTGCAGGACACACTTAAAGACTGTG-----TGGCTTT-AGTTCCCTGAGACTTCACACAT--------AACTTGGCAACTGAGCTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402688 222 + 3644372 AAGCTGCTTGCATCAAGCCTTTTGTCGCAGTTCATTTCATGGGTTGTGGGGCAGTCATTGAAAGC-TCAGATTT-GTGTTCAGAAGCCA---ACTGGCTGGGGGTTGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGAAGTCCTCTGTGTCCCTGCAGGACACACTTAAAGACTGTG-----TGGCTTT-AGTTCCCTGAGACTTCACACAT--------AACTTGGCAACTGAGCTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357306 222 - 10304083 AAGCTGCTTGCATCAAGCCTTTTGTCGGAGTTCATTTCATGGGTTGTGGGGCAGTCATTGAAAGC-TCAGATTT-GTGTTCAGAAGCCA---ACTGGCTGGGGGTTGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGAAGTCCTCTGTGTCCCTGCAGGACACACTTAAAGACTGTG-----TGGCTTT-AGTTCCCTGAGACTTCACACAT--------AACTTGGCAACTGAGCTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440166 222 - 107702431 AAGCTGCTTGCATCAAGCCTTTTGTCGGAGTTCATTTCATGGGTTGTGGGGCAGTCATTGAAAGC-TCAGATTT-GTGTTCAGAAGCCA---ACTGGCTGGGGGTGGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGAAGTCCTCTGTGTCCCTGCAGGACACACTTAAAGACTGTG-----TGGCTTT-AGTTCCCTGAGACTTCACACAT--------AACTTGGCAACTGAGCTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 985751 222 + 1565135 AAGCTGCTTGCATCAAGCCTTTTGTCGGAGTTCATTTCATGGGTTGTGGGGCAGTCATTGAAAGC-TCAGATTT-GTGTTCAGAAGCCA---ACTGGCTGGGGGTTGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGAAGTCCTCTGTGTCCCTGCAGGACACACTTAAAGACTGTG-----TGGCTTT-AGTTCCCTGAGACTTCACACAT--------AACTTGGCAACTGAGCTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3345990 222 - 13651311 AAGCTGCTTGCATCAAGCGTTTTGTCGGAGTTCATTTCGTGGGTTGTGGGGCAGTCACTGAAGGC-TCAGATTT-GTGTTCAGAAGCCA---ACTGGCTGGGGGTTGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGAAGTCCTCGGTGTCCCTGCAGGACACACTTAAAGACTGTG-----TGGCTTT-CGTTCCCTGAGACTTCACACAT--------AACTTGGCAACTGAGCTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3439687 218 - 108792865 GAGCTTCTTGCATCAAGCCTTTCATCGGAGTTCAT---ATGGGTTTCGGGGTAGTCACTGAAAGT-TCAGATTT-GTGTTTGGAAGCCA---GCTGGCTGAGGGTGGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGAAGTCCCCTGCATCCCTGCAGGACACACTTACAGAGTGTG-----CAGCTTT-GGTT-CCTCAGACTTCACACAT--------AACTTGGCAGCCGAGCTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3093558 221 - 7082604 GAGCTTCTTGCATCAAGCCTTTTATCAGAGTTCATATCATGGGTTGCGGGGTAGTCATTGAAAGT-TCAGATTT-GTGTTTGGAAGCCA---GCTGGCTGAGGGTGGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGAAGTCCCCTGCATCCCTGCAGGACACACTTACAGAGTGTG-----CAGCTTT-AGTG-CCTCAGACTTCACACAT--------AACTTGGCAGCCGAGCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 579706 221 + 5243153 GAGCTTCTTGCATCAAGCCTTTTATCAGAGTTCATATCATGGGTTGCAGGGTAGTCACTGAAAGT-TCAGATTT-GTGTTTGGAAGCCA---GCTGGCTGAGGACGGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGAAGTCCCCTGCATCCCTGCAGGACACACTTATACAGTGTG-----CAGCTTT-AGTT-CCTCAGACTTCACACAT--------AACTTGGCAGGCGAGCTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914541 221 - 1938448 GAGCTTCTTGCATCAAGCCTTTTATCAGAGTTCATATCATGGGTTGCGGGGTAGTAATTGAAACT-TCAGATTT-GTGTTTGGAAGCCA---GCTGGCTGAGGGTGGTGAGCAGATTGTCC-A-CATCTTTT-CATTCACTGGAAGTCCCCTGCATCCCTGCAGGACACACTTACAGAGTGTG-----CAGCTTT-AGTT-CCTCAGACTTCACACAT--------AACTTGGCAGCCTAGCTC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2522443 207 + 5252280 GAGATGC-CATGTCAGGCTCTGTAGCCCA------------------AGGGAGGCATCTGGAAGC-CCAGGCTG-GTGTTGAGAAACCA---GCT-GCTGAGGGCTG-GAGCAGACTGTCC-G-CATCTTCT-CATTAGCTGGTGGCCCCCTACATCCCTGCAGGACACACGTGCAGACGGGA-----CAGCTGT-AATGACCTCAG-CCCAACACATCAGAGTTAAATGCAGCAGCTGAGCC- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2025989 138 + 64289059 GAGCTGCTTGCATCAGGCTCTT--GCCGACTTCCAACAGTGGGGGGAGAAGCAATTGTTCAGAGT-CAGACTCT-GTGTTCAGCAGTGA---A---GCAGTGGATCATGAACAGATTTGAC-A-CAT------TA---------------------------GGGTCACACTTGGCCACCGAG------------------------------------------------------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 552522 232 + 2232271 aaGCTGCTTGCATCTAGCTTTTGATCAGATTTCATATATTGGAGTGAGGAGAGGTCATTCACAAC-TCTAATTTGGTATTTAGAAACCA---AATGGTGAGGGATTGTGAGAAAACTGTTT-GCCATCTTTT-CATTAACTTGAAGTTCACTGCATCCCTACAGGACACATTTAAAGGCTATG-----CAGCTTTCAGTTACCTCAGATTTGACATATTACAGTTAAACTTGGCAAG-GAGCTC i dasNov3.JH580157 I 3516 C 0 e micMur3.chr8 2632662 647 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 945664 604 + 1238772 I a score=408977.000000 s hg38.chr2_KI270769v1_alt 39341 37 + 120616 TTCTGTCTAGAATTGTCATGCAGCTTCAGG-AATTCAG s panTro5.chr2A 108006790 37 - 111504155 TTCTGTCTAGAATTGTCATGCAGCTTCAGG-AATTCAG i panTro5.chr2A T 19029 C 0 s panPan2.chr2A 3361842 37 + 114371477 TTCTGTCTAGAATTGTCATGCAGCTTCAGG-AATTCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237514 37 + 637652 TTCTGTCTAGAATTGTCATGCAGCTTCAGG-AATTCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032864 38 + 81552678 TTCTGTCTAGAATTGTCATGCAGCTTCAGGAAATTCAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295369 38 + 108979918 TTCTGTCTAGAATTGTCATGCGGCTTCAGGAAATTCAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008129 38 - 111193037 TTCTGTCTAGAATTGTCATGCGGCTTCAGGAAATTCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402910 38 + 3644372 TTCTGTCTAGAATTGTCATGCGGCTTCAGGAAATTCAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357528 38 - 10304083 TTCTGTCTAGAATTGTCATGCGGCTTCAGGAAATTCAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440388 38 - 107702431 TTCTGTCTAGAATTGTCATGTGGCTTCAGGAAATTCAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 985973 38 + 1565135 TTCTGTCTAGAATTGTCATGCGGCTTCAGGAAATTCAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346212 38 - 13651311 TTCTGTCTAGAATTGTCATGCGGCTTCAGGAAATTCAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3439905 38 - 108792865 TTCTGTCTAGAATTGTCATGCGGCTTCAGTCAGTGCAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3093779 38 - 7082604 TTCTGTCTAGAATTGTCATGCGGCTTCAGTAAATGCAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 579927 38 + 5243153 TTCTGTCTAGAATTGTCATGCGGCTTCAGTAAATGCAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914762 38 - 1938448 TTCTGTCTAGAATTGTCATGCGACTTCAGTAGATGCAG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2522650 27 + 5252280 CTCCACCTGAAG---------GGCTTTGGGAAACTC-- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2026127 37 + 64289059 TTCTCCCTGCACTTGTCAC-CAGGTACGGGAAACTCTG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 552754 38 + 2232271 CTCCACCTCTAATTGTCATACCATTTCAGGAAATTCAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2632662 647 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 945664 604 + 1238772 I a score=14972.000000 s hg38.chr2_KI270769v1_alt 39378 1 + 120616 A s panTro5.chr2A 108006827 1 - 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3361879 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237551 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032902 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295407 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008167 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402948 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357566 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440426 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986011 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346250 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3439943 1 - 108792865 A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3093817 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 579965 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914800 1 - 1938448 A i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 946268 1 + 1238772 A i proCoq1.NW_012151163v1 I 604 C 0 s otoGar3.GL873658 2522677 1 + 5252280 A i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2026164 1 + 64289059 A i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 552792 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2632662 647 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I a score=13899.000000 s hg38.chr2_KI270769v1_alt 39379 1 + 120616 G s panTro5.chr2A 108006828 1 - 111504155 G i panTro5.chr2A C 0 I 1630 s panPan2.chr2A 3361880 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237552 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032903 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295408 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008168 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402949 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357567 1 - 10304083 G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440427 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986012 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346251 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3439944 1 - 108792865 G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3093818 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 579966 1 + 5243153 G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914801 1 - 1938448 G i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2633309 1 - 159902609 G i micMur3.chr8 I 647 C 0 s proCoq1.NW_012151163v1 946269 1 + 1238772 G i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2522678 1 + 5252280 G i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2026165 1 + 64289059 G i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 552793 1 + 2232271 G i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91410831 3057 - 120129022 I a score=1025393.000000 s hg38.chr2_KI270769v1_alt 39380 72 + 120616 GATCGGCGTTGGTCATACTG-GT-----GG-AAGATGTCAAAACAAGAAGAATAAAAATAGTGTGCAGAAAACTTGCTC s panTro5.chr2A 3491689 77 + 111504155 GATCGG-GTTGGTCATACTGTGTTGGAAGC-AAGATGTCAAAACAAGAAGAATAAAAATAGTGTGCAGAAAAGTTGCTC i panTro5.chr2A I 37 C 0 s panPan2.chr2A 3361881 72 + 114371477 GATCGGCGTTGGTCATACTG-GT-----GG-AAGATGTCAAAACAAGAAGAATAAAAATAGTGTGCAGAAAACTTGCTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237553 72 + 637652 GATCGGCGTTGGTCATACTG-GT-----GG-AAGATGTCAAAACAAGAAGAATAAAAATAGTGTGCAGAAAACTTGCTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032904 72 + 81552678 GATCGGCGTTGGTCATACTG-GT-----GG-AAGATGTCAAAACAAGAAGAATAAAAATAGTGTGCAGAAAACTTGCTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295409 72 + 108979918 GATCGGTGTTGGTCATACTG-GT-----AG-AAGATGTCAAAACAAGAAGAATAAAAATAGTGTGCAGAAAACTTGCTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008169 72 - 111193037 GATCGGTGTTGGTCATACTG-GT-----AG-AAGATGTCAAAACAAGAAGAATAAAAATAGTGTGCAGAAAACTTGCTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3402950 72 + 3644372 GATCGGTGTTGGTCATACTG-GT-----AG-AAGATGTCAAAACAAGAAGAATAAAAATAGTGTGCAGAAAACTTGCTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357568 72 - 10304083 GATCGGTGTTGGTCATACTG-GT-----AG-AAGATGTCAAAACAAGAAGAATAAAAATAGTGTGCAGAAAACTTGCTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440428 72 - 107702431 GATCGGTGTTGGTCATACTG-GT-----AG-AAGATGTCAAAACAAGAAAAATAAAAATAGTGTGCAGAAAACTTGCTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986013 72 + 1565135 GATCGGTGTTGGTCATACTG-GT-----AG-AAGATGTCAAAACAAGAAGAATAAAAATAGTGTGCAGAAAACTTGCTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346252 72 - 13651311 GATCGGTGTTGGTCATACTG-GT-----AG-AAGATGTCAAAACAAGAAGAATAAAAATAGTGTGCAGAAAACTTGCTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3439945 72 - 108792865 GAGCGGTGGTGGTCACACTG-GC-----AG-AAGATGTCAAAACAAGAAGAATAAAAATCATGCACAGAAAACTTGCTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3093819 72 - 7082604 GAGCGGTAGTGGTCATACTG-GT-----AG-AAGATGTCAAAACAAGAGGAATAAAAATAGTGTGCAGAAAACTCACTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 579967 71 + 5243153 GAGCGGTGGTGGTCATACTG-GT-----AG-AAGATGTCAAAACAAGAGGAATAAAAATAGTGCGCAGAAAA-TCGCTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914802 72 - 1938448 GAGCGGTGGTGGTCATACTG-GT-----AG-AAGATGTCAAAACAAGAGGAATAAAAATAGTGCGCATAAAACTTGCTC i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2633310 72 - 159902609 GATTGGTGTTGGTCATGCTG-GT-----AG-AAGATGTCAAAACAACAAGAATAAAAATAGTTTGCAGAAAACTTGCTC i micMur3.chr8 C 0 I 7 s proCoq1.NW_012151163v1 946270 73 + 1238772 GATCGGGGTTGGTCACGCTG-GT-----AGAAAGATGTCAAGACAACAAGAATAAAAATAGTTTGCAGAAAACTTGCTC i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2522679 71 + 5252280 GAGCAGGGTGGGTCGTGCTG-GT-----GG-GAGATGTCAAAACAGCAAGAATAAAAACAATTT-CAGGAAACTTGCTC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2026166 43 + 64289059 GATCAGTGCTGCTGGTGAGG-GT-----AG-AAGATGTCAAAACAAGAAG----------------------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 552794 70 + 2232271 GATCAGTACTGGGCGTTGTG-TT-----AG-ATGATGTCAAAACAACAGAAATTTTAGAAGTG--CGGATAACTTGCTC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91410831 3057 - 120129022 I a score=643836.000000 s hg38.chr2_KI270769v1_alt 39452 57 + 120616 T-TAGCCACTGTCTTATCTCTGAAAATTGAACTTCACTTGCATAGTGATACC-CTGTAT-- s panTro5.chr2A 3491766 56 + 111504155 TATAG-CACTGTCTTATCTCTGAAAATTGAACTTCACTTGCATAGTGATA-C-CTGTAT-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3361953 57 + 114371477 T-TAGCCACTGTCTTATCTCTGAAAATTGAACTTCACTTGCATAGTGATACC-CTGTAT-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237625 57 + 637652 T-TAGCCACTGTCTTATTTCTGAAAATTGAACTTCACTTGCATAGTGATACC-CTGTAT-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3032976 57 + 81552678 T-TAGCCACTGTCTTATCTGTGAAAATTGAACTTCACTTGTGTAGTGATACC-CTGTAT-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295481 57 + 108979918 A-TAGCCACTGTCTTATCGCTGAAAACTGAACTTCACTTGCATAGTAATACC-CTGTAT-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008241 57 - 111193037 A-TAGCCACTGTCTTATCGCTGAAAACTGAACTTCACTTGCATAGTAATACC-CTGTAT-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403022 57 + 3644372 A-TAGCCACTGTCTTATCGCTGAAAACTGAACTTCACTTGCATAGTAATACC-CTGTAT-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357640 57 - 10304083 A-TAGCCACTGTCTTATCGCTGAAAACTGAACTTCACTTGCATAGTGATACC-CTGTAT-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440500 57 - 107702431 A-TAGCCACTGTCTTATCGCTGAAAGCTGAACTTCACTTGCATAGTGATACC-CTGTAT-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986085 57 + 1565135 A-TAGCCACTGTCTTATCGCTGAAAACTGAACTTCACTTGCATAGTGATACC-CTGTAT-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346324 57 - 13651311 A-TAGCCTCTGTCTTATCGCTGAAAACTGAACTTCACTTGCATAGTGATACC-CTGTAT-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3440017 57 - 108792865 T-CAGCCATGGTCTTATCTCTGAAAACTGAAGCTCAGTTTCATACTGATACC-CTGTAT-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3093891 57 - 7082604 T-CAGCCATGGTCTTATCTCTGAAAATTGAACCTCAGTTTTATAGTGATACC-CTGTGT-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580038 57 + 5243153 T-CAGCCACAGTCTTATCTCTGAAAATTGAACCTCAGTTTTATAGTGATACC-CTGTAT-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914874 57 - 1938448 T-CAGCCACGGTCTTATCTCTGAAAATTGAACCTCAGTTTTATAGTGATACC-CTGCAT-- i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 946343 57 + 1238772 T-TAGCCACTGTCTTATCTCTAAAAATTGAGCTTCAGTCGCATAGTGATACC-ATGTAT-- i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2522750 57 + 5252280 T-TAGCCATTACATTATCTCTAAGAATGGAACTTGGGTGGCAGAGTAGTACG-ATCCAC-- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2026209 31 + 64289059 ---------------------GAAAACTGAGCTCC------ATGGTGACACC-ATGTGG-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 552864 60 + 2232271 T-TAGCCACTATTTTATCTCAAAAAATTGAACGTCAGTTGCACAGTGATACTACTATATAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2633382 7 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I a score=522548.000000 s hg38.chr2_KI270769v1_alt 39509 40 + 120616 CATGCATCTCCAGGG---ACAGAAAAAAAGATAAGTATATCTT s panTro5.chr2A 3491822 41 + 111504155 CATGCATCTCCTGGA--CAGAGAGAAAAAGATAAGTATATCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3362010 40 + 114371477 CATGCATCTCCAGGG---ACAGAGAAAAAGATAAGTATATCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237682 40 + 637652 CATGCATCTCCAGGG---ACAGAGAAAAAGATAAGTATATCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033033 40 + 81552678 CATGCATCTCCAGGG---ACAGAGAAAAAGATAAGTGTATCTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295538 40 + 108979918 CATGCATCTCCAGGG---ACAGAGAAAAAGATAAATATATCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008298 40 - 111193037 CATGCATCTCCAGGG---ACAGAGAAAAAGATAAATATATCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403079 40 + 3644372 CATGCATCTCCAGGG---ACAGAGAAAAAGATAAATATATCTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357697 40 - 10304083 CATGCATCTCCAGGG---ACAGAGAAAAAGATAAATATATCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440557 40 - 107702431 CATGCATCTCCAGGG---ACAGAGAAAAAGATAAATATATCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986142 40 + 1565135 CATGCATCTCCAGGG---ACAGAGAAAAAGATAAATATATCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346381 40 - 13651311 CATGCATCTCCAGGG---ACAGAGAAAAAGATAAATATATCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3440074 39 - 108792865 CAGGCATCTTCTGGG---ACAGAG-AAAAGATAAGCATATCCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3093948 39 - 7082604 CAGGCATCTTCCAGG---ACAGAA-AAAAGATAAGCATAGCCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580095 39 + 5243153 CAGGCATCTTCCAGG---ACAGAG-AAAAGATAAGCATATCCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914931 39 - 1938448 CAGGCATCTTCCGGG---GCAGAG-AAAAGATAAGCATGTCCT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2633389 40 - 159902609 CATGTATCTCCAGGG---ACAGAGAAGAAGATAAGTATATCTT i micMur3.chr8 I 7 I 451 s proCoq1.NW_012151163v1 946400 40 + 1238772 CATGTATCTCCAGGG---ACAGAGAAGAAGATAAGTATATCTT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2522807 40 + 5252280 CACCTGTCTCCAGGG---ACGGAGGAGCAGATAAATATGTCCT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2026240 43 + 64289059 CCTCTGTGTCCAGGGGAGAAAAGAAGAAAGATCAGCATATTGC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 552924 40 + 2232271 CCTGAGGCTCCTGAG---GTAGAAGAAAAGTTAAATGGATCTT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91410831 3057 - 120129022 I a score=17025.000000 s hg38.chr2_KI270769v1_alt 39549 3 + 120616 AAA- s panTro5.chr2A 3491863 3 + 111504155 AAA- i panTro5.chr2A C 0 I 15 s panPan2.chr2A 3362050 3 + 114371477 AAA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237722 3 + 637652 AAA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033073 3 + 81552678 AAA- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295578 3 + 108979918 AAA- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008338 3 - 111193037 AAA- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403119 3 + 3644372 AAA- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357737 3 - 10304083 CAA- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440597 3 - 107702431 AAA- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986182 3 + 1565135 CAA- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346421 3 - 13651311 AAA- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3440113 3 - 108792865 CAA- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3093987 3 - 7082604 CAG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580134 3 + 5243153 CAA- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914970 3 - 1938448 CAG- i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 946440 3 + 1238772 AAA- i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2522847 3 + 5252280 GAA- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2026283 2 + 64289059 -AG- i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 552964 3 + 2232271 -AAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2633429 451 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I a score=139816.000000 s hg38.chr2_KI270769v1_alt 39552 12 + 120616 TTTGCCTTTCCT s panPan2.chr2A 3362053 12 + 114371477 GTTGCCTTTCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237725 12 + 637652 GTTGCCTTTCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033076 12 + 81552678 GTTGCCTTTCCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295581 12 + 108979918 GTTGCCTTTCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008341 12 - 111193037 GTTGCCTTTCCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403122 12 + 3644372 GTTGCCTTTCCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357740 12 - 10304083 GTTGCCTTTCCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440600 12 - 107702431 GTTGCCTTTCCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986185 12 + 1565135 GTTGCCTTTCCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346424 12 - 13651311 GTTGCCTTTCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3440116 12 - 108792865 GTTGCCTTTCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3093990 12 - 7082604 GTTGCCTTTCCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580137 12 + 5243153 GTTGCCTTTCCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914973 12 - 1938448 GTTGCCTTTCCT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 946443 12 + 1238772 GTCGCCCTTCCT i proCoq1.NW_012151163v1 C 0 I 1318 s otoGar3.GL873658 2522850 11 + 5252280 GTT-TTTTTCCT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2026286 10 + 64289059 GTT--CTTTCTT i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 552967 12 + 2232271 GTGACTATTTTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2633429 451 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e panTro5.chr2A 3491866 15 + 111504155 I a score=25719.000000 s hg38.chr2_KI270769v1_alt 39564 5 + 120616 ATTCG s panPan2.chr2A 3362065 5 + 114371477 ATTCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237737 5 + 637652 ATTCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033088 5 + 81552678 CTTCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295593 5 + 108979918 ATTCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008353 5 - 111193037 ATTCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403134 5 + 3644372 GTTCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357752 5 - 10304083 GTTCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440612 5 - 107702431 ATTCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986197 5 + 1565135 ATTCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346436 5 - 13651311 GTTCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3440128 5 - 108792865 ATTGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3094002 5 - 7082604 ATTGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580149 5 + 5243153 ATTGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914985 5 - 1938448 GTTAG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2522861 3 + 5252280 GCT-- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2026296 5 + 64289059 ACTTG i canFam3.chr17 C 0 C 0 e micMur3.chr8 2633429 451 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e dasNov3.JH580157 552979 0 + 2232271 C e panTro5.chr2A 3491866 15 + 111504155 I a score=443143.000000 s hg38.chr2_KI270769v1_alt 39569 38 + 120616 CGTTTCTCTGATTTTGAAACAGAAGTTCCCTATCCGTG s panTro5.chr2A 3491881 35 + 111504155 CGTTTCTAT--TTTTGAAACAGAAGTTCCCTATCCG-G i panTro5.chr2A I 15 C 0 s panPan2.chr2A 3362070 38 + 114371477 CGTTTCTCTGATTTTGAAACAGAAGTTCCCTATCCGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237742 38 + 637652 CGTTTCTCTGATTTTGAAACAGAAGTTCCCTATACGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033093 38 + 81552678 CATTTCTCTGATTTTGAAACAGAAGTTCCCTATCCGTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295598 38 + 108979918 TATTTCTCTGATTTTGAAACAGAAGTTCCCTATCCGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008358 38 - 111193037 TATTTCTCTGATTTTGAAACAGAAGTTCCCTATCCGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403139 38 + 3644372 TATTTCTCTGATTTTGAAACAGAAGTTCCCTATCCGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357757 38 - 10304083 TATTTCTCTGATTTTGAAACAGAAGTTCCCTATCCGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440617 38 - 107702431 TATTTCTCTGATTTTGAAACAGAAGTTCCCTATCCATG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986202 38 + 1565135 TATTTCTCTGATTTTGAAACAGAAGTTCCCTATCCGTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346441 38 - 13651311 TATTTCTCTGCTTTTGAAATAGAAGTTCCCTGTCCATG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3440133 38 - 108792865 TAGTTTTCCGATGTTGAAATAGAAGTTCCCTGTCTGTG i calJac3.chr14 C 0 I 700 s saiBol1.JH378218 3094007 38 - 7082604 TAGTTCTCTGGTGTTGAAATAGAAGTTCCCTATCTGTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580154 38 + 5243153 TAGTTCTCTGATGTTGAAACAGAAGTTCCCTATCTGTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1914990 38 - 1938448 TGGTTCTCTGATGTTGAAATGGAGGTTCCCTGTCTGTG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2522864 34 + 5252280 CATATCTCTGATGTGGAAACAGGG----CCCGTCTGTG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2026301 38 + 64289059 TAGTGCTCTGATTTTGAGACAGAAGTCCCCTAGTCGTG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 552979 36 + 2232271 --TTTCTCTGATTTTGAAATAGAAGTCCCCTATCTGTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2633429 451 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I a score=11849.000000 s hg38.chr2_KI270769v1_alt 39607 1 + 120616 A s panTro5.chr2A 3491916 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3362108 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237780 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033131 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295636 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008396 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403177 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357795 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440655 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986240 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346479 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3094045 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580192 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1915028 1 - 1938448 A i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2522898 1 + 5252280 G i otoGar3.GL873658 C 0 I 4 s canFam3.chr17 2026339 1 + 64289059 A i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 553015 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2633429 451 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e calJac3.chr14 3440171 700 - 108792865 I a score=625629.000000 s hg38.chr2_KI270769v1_alt 39608 65 + 120616 ATTCT---TCAGATAGTTG-AGGTAGAGTACTCTTGCA------TTGCACAGGA-TGTCACTGTTGTTT-----C---CAGATG s panTro5.chr2A 3491917 65 + 111504155 ATTCT---TCAGATAGTTGAAGGTAG-GTACTCTTTCA------TTGCACAGGACCGTCACTGTTG-TT-----C---CAGATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3362109 65 + 114371477 ATTCT---TCAGATAGTTG-AGGTAGAGTACTCTTTCA------TTGCACAGGA-TGTCACTGTTGTTT-----C---CAGATG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237781 65 + 637652 ATTCT---TCAGATAGTTG-AGGTAGAGTACTCTTTCA------TTGCACAGGA-TGTCACTGTTGTCT-----C---CAGATG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033132 60 + 81552678 ATTCT---TCAGATAGTTG-AG-----GTCCTCTTTCA------CTGCAAAGGA-TGTCACTGTTGTTT-----C---CAGATG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295637 65 + 108979918 ATTCT---TCAGATGGTTG-AGGTAGAGTACTCTTTCA------TTGCACAGGA-TGCCACTGTTGTTT-----C---CAGATG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008397 65 - 111193037 ATTCT---TCAGATGGTTG-AGGTAGAGTACTCTTTCA------TTGCACAGGA-TGCCACTGTTGTTT-----C---CAGATG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403178 65 + 3644372 ATTCT---TCAGATGGTTG-AGGTAGAGTACTCTCTCA------TTGCACAGGA-TGCCACTGTTGTTT-----C---CAGATG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357796 65 - 10304083 ATTCT---TCAGATAATTG-AGGTAGAGTACTCTTTCA------TTGCACAGGA-TGCCACTGTTGTTT-----C---CAGATG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440656 65 - 107702431 ATTCT---TCAGATAGTTG-AGGTAGAGTACTCTTTCA------TTGCACAGGA-TGCCACTGTTGTTT-----C---CAGATG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986241 65 + 1565135 ATTCT---TCAGATAATTG-AGGTAGAGTACTCTTTCA------TTGCACAGGA-TGCCACTGTTGTTT-----C---CAGATG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346480 65 - 13651311 ATTCT---TCAGAGAGTTG-AGGTAGAGTACTCTTTCA------CTGCACAGGA-TGTCACTGTTGCTT-----C---CAGATG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3440871 65 - 108792865 ATTCT---TCAGCTAGCCA-AGGTAGAGTGCTTTTTCA------CTGCACAGGA-AGTCACCGTTGCTT-----C---CAGACT i calJac3.chr14 I 700 C 0 s saiBol1.JH378218 3094046 65 - 7082604 ATTCT---TCAGCTAGTTG-AGGTAGAGTGCTCTTTAA------CTGCACAGGA-AGTCACTGTTGCTT-----C---CAGATT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580193 65 + 5243153 ATTCT---TCCACTAGTTG-AGGTAGAGTGCTCTTTAA------CTGCACAGGA-AGTCACTGTTGCTT-----C---CAGATT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1915029 65 - 1938448 ATTCT---TCAGCTAGTTG-AGGTGGAGTGCTCTTTAA------CTGCACAGGA-AGTCACTGTTGCTT-----C---CAGACT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2522903 64 + 5252280 TTTCT---AACCATAGCTG-AGACGGAGCGCTCCTTAG------CTAGACAAGA-GGCCAC-GTTCCTC-----C---CAGATT i otoGar3.GL873658 I 4 I 4 s canFam3.chr17 2026340 66 + 64289059 ATTCTGTGTCTGGTACTCG-AGATGCCATCCTT----G------CTTCGCGGGA-ACCGAATG-TGTCT-----CGGGCACACT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 553016 76 + 2232271 ATTCT---AATTATAGTTC-AAGTACGGTACTATTTAAACTTGCCTACATAGGA-TGTCACTGTTTCATTGGAAC---CAAATG i dasNov3.JH580157 C 0 I 18 e micMur3.chr8 2633429 451 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I a score=758439.000000 s hg38.chr2_KI270769v1_alt 39673 70 + 120616 GATTTGTGCAAATTCAGATA-TTTGATTTT--TCTATG-TTGCCCACGTCTATTTACTGTTTACTTTTACTTTA s panTro5.chr2A 3491982 67 + 111504155 GATTTGTGCAAATTCAGATA-TTTGATTTT--TCTATG-TTGCC--AGTCTATTTACTGTTTAC-TTTACTTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3362174 70 + 114371477 GATTTGTGCAAATTCAGATA-TTTGATTTT--TCTATG-TTGCCCACGTCTATTTACTGTTTACTTTTACTTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237846 70 + 637652 GATTTGTGCAAATTCAGATA-TTTGATTTT--TCTATG-TTGCCCATGTCTATTTACTGTTTACTTTTACTTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033192 70 + 81552678 GATTTGTGCAAATTCAGATA-CTTGATTTT--TCTATG-TTGCCCACATCTATTTACTGTTTACTTTTACTTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295702 70 + 108979918 GATTTGTGCAAATTCAGATA-TTTGATTTT--TCTGTG-TTGCCCACATCTATTTACTGTTTACTTTTACTTTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008462 70 - 111193037 GATTTGTGCAAATTCAGATA-TTTGATTTT--TCTGTG-TTGCCCACATCTATTTACTGTTTACTTTTACTTTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403243 70 + 3644372 GATTTGTGCAAATTCAGATA-TTTGATTTT--TCTGTG-TTGCCCACATCTATTTACTGTTTACTTTTACTTTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357861 70 - 10304083 GATTTGTGCAAATTCAGATA-TTTGATTTT--TCTGTG-TTGCCCACATCTATTTACTGTTTACTTTTACTTTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440721 70 - 107702431 GATTTGTGCAAATTCAGATA-TTTGATTTT--TCTGTG-TTGCCCACATCTATTTACTGTTTACTTTTACTTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986306 70 + 1565135 GATTTGTGCAAATTCAGATA-TTTGATTTT--TCCGTG-TTGCCCACATCTATTTACTGTTTACTTTTACTTTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346545 70 - 13651311 GATTTGTGCAAATTCAGGTA-TTTGATTTT--CCTGTG-TTGCCCACGTCTATTTACTGTTTACTTTTACTTTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3440936 69 - 108792865 GATCTGTGCAAATTCAGATA-TTTGATTTT---CTATG-TTGCTCGCATCTGTTTACTGCTTACTTTTATTTTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3094111 69 - 7082604 GATTTGTGCAAATTCAGATA-TTTGATTTT---CTGTG-TTGCCCGCATCTATTTGCTGTTTACTTTTATTTTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580258 69 + 5243153 GATTTGTGCAAATTCAGATA-TTTGATTTT---CTATG-TTGCCCGCATCTATTTACTGTTTACTTTTATTTTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1915094 69 - 1938448 GATTTGTACAAATTCAGATA-TTTGATTTT---CTATG-TTGCCCGCATCTATTTACTGTTTACTTTTATTTTA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2633880 72 - 159902609 GATTTATGCACATTCAGATATTTTGACTTT--TCTATATTTGTTCACATCTATTTACTGTTTACTTTTATTTTA i micMur3.chr8 I 451 I 844 s otoGar3.GL873658 2522971 25 + 5252280 CATCTATGCATATTCA-------------------------------------------------TTTATTTTA i otoGar3.GL873658 I 4 C 0 s canFam3.chr17 2026406 45 + 64289059 GGTTTGTGCAGGTG-GCATG-TTTGGGTTT--TCTGGG-TCACGTGCATC------------------------ i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 553110 48 + 2232271 GATTTGTTTAGGTTCAGATA-TTTGATTTTGTTCTATG-TGGCTCACATC------------------------ i dasNov3.JH580157 I 18 C 0 e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I a score=332324.000000 s hg38.chr2_KI270769v1_alt 39743 33 + 120616 CTTTTTTTTCTGTTCTAATAGCTTTTTAATAAA s panTro5.chr2A 3492049 31 + 111504155 C-TTTTTTTCTGTTCTAATAG-TTTTTAATAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3362244 32 + 114371477 C-TTTTTTTCTGTTCTAATAGCTTTTTAATAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237916 33 + 637652 CTTTTTTTTCTGTTCTAATAGCTTTTTAATAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033262 33 + 81552678 CTTTTTTTTCTGGTCTAATAGCTTTTTAATAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295772 33 + 108979918 CTTTTTTTTCTGTTCTAATAGCTTTTTAATAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008532 33 - 111193037 CTTTTTTTTCTGTTCTAATAGCTTTTTAATAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403313 33 + 3644372 CTTTTTTTTCTGTTCTAATAGCTTTTTAGTAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357931 33 - 10304083 CTTTTTTTTCTGTTCTAATAGCTTTTTAATAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440791 33 - 107702431 CTTTTTTTTCTGTTCTAATAGCTTTTTAATAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986376 33 + 1565135 CTTTTTTTTCTGTTCTAATAGCTTTTTAATAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346615 33 - 13651311 CTTTTTTTTCTGTTCTAATAGCTTTTTAATAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3441005 33 - 108792865 CTTCTTTTTCTGTTCTAATAGGTTTTTAATAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3094180 33 - 7082604 CTTCTTTTTCTGTTCTAATAGCTTTTTAATAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580327 33 + 5243153 CTTCTGTTTCTGTTCTAATAGGTTTTTAATAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1915163 33 - 1938448 CTTCTTTTTCTGTTCTAATAGGTTTTTAATAAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2522996 26 + 5252280 CCtttttt-------taaaattattttaataga i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2633952 844 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e canFam3.chr17 2026451 0 + 64289059 C e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e dasNov3.JH580157 553158 0 + 2232271 C a score=960246.000000 s hg38.chr2_KI270769v1_alt 39776 93 + 120616 AGC-TATTTACTTTTGTTCTAACCCACTACTTCCGTACCTTATGAGAAAGTCTGTTTTGGGAT-----CTGGTTGAATC-----TATTCTTTGCTCAACAAAAA s panTro5.chr2A 3492080 91 + 111504155 AGCATCTCTAC--TTGTTCTAACCCACTACTTCCGTACC-TATGAGAAAGTCTGTTTTGGGAT-----CTGGTGATATC-----TACTCTTTGCTCAACAAAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3362276 93 + 114371477 AGC-TATCTACTTTTGTTCTAACCCACTACTTCCGTACCTTATGAGAAAGTCTGTTTTGGGAT-----CTGGTTGAATC-----TACTCTTTGCTCAACAAAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 237949 93 + 637652 AGC-TGTTTACTTTTGTTCTAACCCACTACTTCCGTACCTTATGAGAAAGTCTGTTTTGGGAT-----CTGGTTGAATC-----TACTCTTTGCTCAACAAAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033295 88 + 81552678 AGC-TATTTACTTTTATTCTAACCCACTACTTCCGTACCTTATGAGAAAGTCTGTTTTGGGAT-----CTGGTTGAA----------TCTTTGCTCAACAAAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295805 93 + 108979918 AGG-TATTTACTTTTATTCTAACCCACTACTTCTGTACCTTATGAGAAACTCTGTTTTGGGAT-----CTGGTTGAATC-----CACTCTTTGCTTAACAAAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008565 93 - 111193037 AGG-TATTTACTTTTATTCTAACCCACTACTTCTGTACCTTATGAGAAACTCTGTTTTGGGAT-----CTGGTTGAATC-----CACTCTTTGCTTAACAAAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403346 93 + 3644372 AGG-TATTTACTTTTATTCTAACCCACTACTTCTGTACCTTATGAGAAACTCTGTTTTGGGAT-----CTGGTTGAATC-----CACTCTTTGCTTAACAAAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3357964 93 - 10304083 AGG-TATTTACTTTTATTCTAACCCACTACTTCTGTACCTTATGAGAAACTCTGTTTTGGGAT-----CTGGTTGAATC-----CACTCTTTGCTTAACAAAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440824 93 - 107702431 AGG-TATTTACTTTTATTCTAACCCACTACTTCTGTACCTTATGAGAAACTCTGTTTTGGGAT-----CTGGTTGAATC-----CACTCTTTGCTTAACAAAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986409 93 + 1565135 AGG-TATTTACTTTTATTCTAACCCACTACTTCTGTACCTTATGAGAAACTCTGTTTTGGGAT-----CTGGTTGAATC-----CACTCTTTGCTTAACAAAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346648 91 - 13651311 AGG-TATTTACTTTTATTCTAACCCACTACTTCTGTACCTTATGAGAAA--CTGTTTTGGGAT-----CTGGTTGAATC-----CACTCTTTGCTTAACAAAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3441038 89 - 108792865 AGC-CATTTACTTTTATTCTAACCCACTACTTCTGTATCTTGTGAGAAATTTTG----CGGAT-----CTGGTTGAATC-----TACTCTTTGCTCAACaaaaa i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3094213 89 - 7082604 AGC-TATTTACTTTTATTCTAACCCATTACTTCTGCATCTTATTAGAAACTCTG----GGGAT-----CCAGTTGAATC-----TATTCTTTGCTCAACaaaaa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580360 89 + 5243153 AGC-TATTTATTTTTATTCTAACCCACTACTTCTGTATCTTATGAGAAACTCTG----GGGAT-----CCGGTTGAATC-----TACTCTTTGCTCAAGAAAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1915196 89 - 1938448 AGC-TATTTACTTTTATTCTAACCCACTACTTCTGTATCTTATGAGAAACTCTG----GGGAT-----CCAGTTGAATC-----TACTCTTTGCTCAACAAAAA i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2026451 95 + 64289059 --C-TATTCATCCCTATTCTCACCC---GCTTCTGTCCC---CGGGAAACCCTGTCTGGAGATGCCTCCTGCTTGAATCCTCCTTACTCTTCTCTCAACCAAAA i canFam3.chr17 C 0 I 348 s dasNov3.JH580157 553158 96 + 2232271 --C-TATTTACTTTTATTCTAATCTACCACTTCTGTCCCTTTTGAGAAACCCTGTTTTAGGATATCCCCTAATTGAATC-----CACTGTTTACTTAACAGGAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2633952 844 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e otoGar3.GL873658 2523022 0 + 5252280 C a score=73666.000000 s hg38.chr2_KI270769v1_alt 39869 8 + 120616 TTGATGTT s panTro5.chr2A 3492171 8 + 111504155 TTGATGTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3362369 8 + 114371477 TTGATGTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 238042 8 + 637652 TTGATGTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033383 8 + 81552678 TCGATGTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295898 8 + 108979918 TTGGTATT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008658 8 - 111193037 TTGGTATT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403439 8 + 3644372 TTGGTATT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3358057 8 - 10304083 TTGATATT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440917 8 - 107702431 TTGATATT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986502 8 + 1565135 TTGGTATT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346739 8 - 13651311 TTGATATT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3441127 8 - 108792865 ttgatatt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3094302 8 - 7082604 ttgatatt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580449 8 + 5243153 CTGATATT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1915285 8 - 1938448 GTGATATT i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 553254 7 + 2232271 -TGGaatt i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2633952 844 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e canFam3.chr17 2026546 348 + 64289059 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e otoGar3.GL873658 2523022 0 + 5252280 C a score=1347947.000000 s hg38.chr2_KI270769v1_alt 39877 171 + 120616 TATTTAAATACAAA--------TA-TTAAATACTCGGA-CCAttaacaaatat------------------tttttcatatttgccttagaca-tttttgtaacaaatgaaagtacccattgctgatacag-------cctgtgaacctcc-tcccaattcagtcccctcccagaggcagtcacaatcatg-gtttgttg-tgtattctt s panTro5.chr2A 3492179 163 + 111504155 T-TTTAAAT--CAA--------TA-TTAAATactcag---cattaacaaata-------------------tttttcatatttg-cttagaca-tttttgtaacaaatgaaagcacccattgctgatacag-------cctgtgaacctcc-tcccaattcagt-ccctcccagaggcagtcacaatcat--gtttgttgttgtattctt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3362377 171 + 114371477 TATTTAAATACAAA--------TA-TTAAATactcaga-ccattaacaaatat------------------tttttcatatttgccttagaca-tttttgtaacaaatgaaagcacccattgctgatacag-------cctgtgaacctcc-tcccaattcagtcccctcccagaggcagtcacaatcatg-gtttgttg-tgtattctt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 238050 170 + 637652 TATTTAAATACAAA--------TA-TTAAATactcaga--cattaacaaatat------------------tttttcatatttgccttagaca-tttttgtaacaaatgaaagcacccattgctgatacag-------cctgtgaacctcc-tcccaattcagtcccctcccagaggcagtcacaatcatg-gtttgttg-tgtattctt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033391 171 + 81552678 TATTTAAATACAAA--------TA-GTAAATACGCAGA-CCAttaacaaatat------------------tttttcgtatttgccttagaca-tttttgtaacaaatgaaagcacccattgctgatacag-------cctgtgaacctcc-tcccaattcagtcccctcccggagggagtcacagtcatg-gtttgttg-tgtattctt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3295906 158 + 108979918 ----------------------TA-TAAAATactcaga-caattaacaaatat------------------tttttcatatttgccttagaccttttttgtaacaaatgaaatcacccattgctgatacag-------cctgtgaacctctttcccagttcagt-ccctcccagaagcagtcacagttgtg-gtgtgttg-tgtatcctt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008666 158 - 111193037 ----------------------TA-TAAAATactcaga-caattaacaaatat------------------tttttcatatttgccttagaccttttttgtaacaaatgaaatcacccattgctgatacag-------cctgtgaacctctttcccagttcagt-ccctcccagaagcagtcacagttgtg-gtgtgttg-tgtatcctt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403447 158 + 3644372 ----------------------TA-TAAAATactcaga-caattaacaaatat------------------tttttcatatttgccttagaccttttttgtaacaaatgaaatcacccattgctgatacag-------cctgtgaacctctttcccagttcagt-ccctcccagaagcagtcacagttgtg-gtgtgttg-tgtatcctt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3358065 157 - 10304083 ----------------------TA-TAAAATactcaga-caattaacaaata-------------------tttttcatatttaccttagaccttttttgtaacaaatgaaatcacccattgctgatacag-------cctgtgaacctccttcccagttcagt-ccctcccagaagcagtcacagttgtg-gtgtgttg-tgtagcctt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3440925 155 - 107702431 ----------------------TA-TAAAATactcaga-caattaacaaatat------------------tttttcatatttgccttagaccttttttgtaacaaatgaaatcacccattgctgatacag-------cctgtgaacctccttcccagttcagt-ccctcccagaagcagtcacagtt----gtgtgttg-tgtatcctt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986510 158 + 1565135 ----------------------TA-TAAAATactcaga-caattaacaaatat------------------tttttcatatttgccttagaccttttttgtaacaaatgaaatcacccattgctgatacag-------cctgtgaacctccttcccagttcagt-ccctcccagaagcagtcacagttgtg-gtgtgttg-tgtagcctt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346747 171 - 13651311 TATTTAACTACAAA--------TA-TTAAATACTCAGA-CAAttaacacat-t------------------tttttcatatttgccttagaccttttttgtaacaaatgaaatcacccattgctgatacag-------cctgtgaacctccttcccagttcagt-ccctcccagaagcagtcagagtcgtg-gtgtgttg-tgtagcctt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3441135 170 - 108792865 tatttaaatacaaa--------ta-ttaaatatGCAGG-CAATTAAC--ATAG------------------TTTTTCGTGTTTGCCTTAGACG--TTTTTTAACAAATG-AAGCACCTGTTGCTGATGCAGCCGGCGACCGGCGACGCTTCTTCCCA-CCCAGT-CCCTCCCAGAAGCAGTCACAGCCATG-CC---TTA-CGTACCCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3094310 152 - 7082604 tatttaaatacaaa--------ta-ttaaataCACAGG-CAATTAACAAATAT------------------TTTTTCATGTTTGCCTTAGACATTTTTTTTAACAAATGAAAGCACCTGTTGCTGATGCAG-------CCGGCAACACTCCTTCCCA-CTCAGT-CGCTCCCAGAAGCACTCACAG---------------------CTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580457 170 + 5243153 TATTTAAATACAAA--------CA-TTAAATATGCAGG-CAATTGACAAATAT------------------TTTTTCGTGTTTGCCTTAGACG-TTTTTTTAACAAATGAAAGCACCTGTTGCTGATGCAG-------CCGGTGACACTCCTTCTCA-TTCAGT-CCCTCCTAGAAGCAGTCACAGCTGTG-CCTTGTTG-TGTACCCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1915293 169 - 1938448 TATTTAAATACAAA--------TA-TTAAATACGCAGG-CAATTAACAAATAT------------------TTTTTCGTGTTTGCCTCAGACA--TTTTTTAACAAATGAAAGCACCTGTTGCTGATGCAG-------CCGGTGATGCTCCTTCCCA-CTCAGT-CCCTCCCAGAAGCAGTCACAGCCGTG-CCTTGTTG-TGTAGCCTT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2523022 176 + 5252280 tttttaaatacaaa--------tattttaaCACTTAAAGCAGTTAACAAATATAACCA-------------TTCTTCATCTTGACCCCAGACC-TTTTTGTAGTAAATGTAAGTGTCCATCACTGCTCCAG-------CCTGTGGGCTGC--TCCCATGTCCAC-CCCTCCTGGCAGCAGGCCCACTGTGG-ATTTGTGC-AGTGTCCTT i otoGar3.GL873658 C 0 I 385 s dasNov3.JH580157 553261 198 + 2232271 -ttttaaattaaaaaaaattttta-ttaagcattcaga-tacctaccaactataattaaagtagtaacatttttttcatatttgcttcaggcttccttcacaataaaagtaagtgtacattatcaatacat-------cctttgagctccttctcaattccaat-cccttccaaaagcagttactatcctgaatttgttg-tatattgtt i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2633952 844 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e canFam3.chr17 2026546 348 + 64289059 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I a score=609839.000000 s hg38.chr2_KI270769v1_alt 40048 62 + 120616 ccaggtcatgtttttacatatttgcttcatacacacacatatacatacacacagagaaatac s panTro5.chr2A 3492342 60 + 111504155 ccaggtcatgtttttacatatttg-ttcatacacacacata-acatacacacagagaaatac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3362548 62 + 114371477 ccaggtcatgtttttacatatttgcttcatacacacacatatacatacacacagagaaatac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 238220 62 + 637652 ccgggtcatgattttacatatttgcttcatacactcacatatacatacacacagagaaatac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033562 62 + 81552678 ccaggtcatgtttttacatatttgcttcatacacacacatatacatacacacagagaaatac i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3296064 62 + 108979918 ccagatcatgtttttacatatttgcttcatacacacacatatacatacacacagagaaatac i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008824 62 - 111193037 ccagatcatgtttttacatatttgcttcatacacacacatatacatacacaCAGAGAAATAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403605 62 + 3644372 ccagatcatgtttttacatatttgcttcatacacacacatatacatacacacagagaaatac i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3358222 62 - 10304083 ccagatcatgtttttacatatttgcttcatacacacacatatacatacacacagagaaatac i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3441080 62 - 107702431 ccagatcatgtttttacatatttgcttcatacacacacatatacatacacaCAGAGAAATAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986668 62 + 1565135 ccagatcatgtttttacatatttgcttcatacacacacatatacatacacacagagaaatac i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346918 62 - 13651311 ccagatcatgtttttacatatttgcttcatacacacacatatacatacacacagagaaatac i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3441305 62 - 108792865 CCAGGTCAGGTTCTCACATACGCACTGCATCTACACACACAGGCATGCGCACAGAGAAATAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3094462 62 - 7082604 CCAGATCAGGTTCTCACGTACTCACTTCATCTACACACACATACATGCGCACAGAGAAGTAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580627 62 + 5243153 CCAGATCAGGTTCTCACATACTCACTTCATCTACACACACATATGTGCGCACAGAGAAGTAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1915462 60 - 1938448 CCAGGTCAGGTTCTCAC--ACTCACTTCATCTACACACACATACATGCGCACAGAGAAATAC i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 553459 62 + 2232271 ccagatcatgttttttcattttgacttcataaaaatccataggcttacacacagagaaactc i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2633952 844 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e canFam3.chr17 2026546 348 + 64289059 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e otoGar3.GL873658 2523198 385 + 5252280 I a score=2246508.000000 s hg38.chr2_KI270769v1_alt 40110 264 + 120616 a--tatacagagagagactattgtcttataag-ctttgtaaatgtacatcatgagcatatctgtcttcatttgc--ttttttt-t--ccccactttccattattcata-tccatccatatccgtatccataaggatgaacaattaggatctttccacctttcggctattatgagcaatggtgttatggg----catccttgtacatttccctt--tgtacatgttcaggcgtttctc-tgagc-tgtaaatttaaagtggcat------------------------------------------------------ATGTGAGAGTGAC--------CATGC s panTro5.chr2A 3492402 257 + 111504155 at-tatacag-gagaga-tattgtcttataagtttttttaaatgt--atcatgagcatatctgtcttcatttgc--tcttttt-c--ccccactttccattattcata-tccatccatatccgtatccataaggttgaacaatta-gatctttccaac-ttcggcta-tatgagcaatggt-ttat-gg----catccttgtacgtttcc--t--tgtacatgttcaggcgtttctcttgagcttgtaaatttaaagtggcat------------------------------------------------------ATGTGAGAGTGAC--------CATGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3362610 264 + 114371477 a--tatacagagagagactattgtcttataag-ctttgtaaatgtacatcatgagcatatctgtcttcatttgc--ttttttc-c--ccccactttccattattcata-tccatccatatccgtatccataaggatgaacaattaggatctttccaactttcggctattatgagcaatggtgttatggg----catccttgtacgtttccctt--tgtacatgttcaggcgtttctc-tgagc-tgtaaatttaaagtggcat------------------------------------------------------atgtgagagtgac--------catgc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 238282 264 + 637652 a--tatacagagagagactattgtcttataag-ctttgtaaatgtacatcatgagcatatctgtcttcatttgc--ttttttt-t--ccccactttccattattcata-tccatccatatccgtatccataaggatgaacaattaggatctttccaactttcggctattatgagcaatggtgttatggg----catccttgtacatttccctt--tgtacatgttcaggcgtttctc-tgagc-tgtaaatttaaagtggcat------------------------------------------------------atgtgagagtgac--------catgc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033624 264 + 81552678 a--tatacagagagagactattgtcttacaag-ctttgtaaatatacatcatgagcatatctgtcttcgtttgc--ttttttt-t--tcccactttccattattcata-tccatccatatccgtatccataaggatgaacaattaggatctttccaacttccagctattatgagcaatggcgtcacggg----catccttgtacatttccctt--tgtacatgttcaggagtttctc-tgagc-tgtaaatttgaagtggcat------------------------------------------------------ATGTGaaagtgac--------catgc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3296126 261 + 108979918 atgtatacagagagagagtattgtcttataag-ctttgtaaatatacttcatgagcacatcattcttcatttgcttttttTTT-T--CCCCACTCGccattgttcata-tccatctgtatccgtatccataaagatgaacaattaggatctttccagcttttggctatgatgagcagtggtgttatgga----catctttgtacatttccctt--tgtacatgttgag-------tt-cgagg-tgtaaatttaaagtggcat------------------------------------------------------ATGTGAAAGTGGC--------CATGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5008886 257 - 111193037 ATGTATACAGAGAGA----ATTGTCTTATAAG-CTTTGTAAATATACTTCATGAGCACATCATTCTTCATTTGCTTTTTTTTT-T--CCCCACTCGccattgttcata-tccatctgtatccgtatccataaagatgaacaattaggatctttccagcttttggctatgatgagcagtggtgttatgga----catctttgtacatttccctt--tgtacatgttgag-------tt-cgagg-tgtaaatttaaagtggcat------------------------------------------------------ATGTGaaagtggc--------catgc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403667 260 + 3644372 atgtatacagagagagagtattgtcttataag-ctttgtcaatatacttcatgagcacatcattcttcatttgc-tttttttt-t--ccccactcgccattgttcata-tccatctgtatccgtatccataaagatgaacaattaggatctttccagcttttggctatgatgagcagtggtgttatgga----catctttgtacatttccctt--tgtacatgttgag-------tt-cgagg-tgtaaatttaaagtggcat------------------------------------------------------ATGTGAAAGTGGC--------CATGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3358284 263 - 10304083 atgtgtacagagagagagtattgtcttataag-ctttgtaaatatacttcatgagcacatcattcttcatttgcttttttTTT-TCCCCCCACTCGccattgttcata-tccatctgtatccgtatccataaagatgaacaattaggatctttccagcttttggctatgatgagcagtggtgttatgga----catctttgtacatttccctt--tgtacatgttgag-------tt-cgagg-tgtaaatttaaagtggcat------------------------------------------------------ATGTGAAAGTGGC--------CATGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3441142 261 - 107702431 ATGTGTACAGAGAGAGAGTATTGTCTTACAAG-CTTTGTAAATATACTTCATGAGCACAtcattcttcatttgcttttttttt-t--ctgcactcgccattgttcatA-TCCATCTGtatccgtatccataaagatgaacaattaggatatttccagctttaggctatgatgagcagtggtgttatgga----catctttgtacatttccctt--tgtacatgtTGAG-------TT-CGAGG-TGTAAATTTAAAGTGGCAT------------------------------------------------------ATGTGaaagtggc--------catgc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986730 262 + 1565135 atgtgtacagagagagagtattgtcttataag-ctttgtaaatatacttcatgagcacatcattcttcatttgcttttttTTTCC--CCCCACTCGCCAGTGTTCATA-TCCATCTGtatccgtatccataaagatgaacaattaggatctttccagcttttggctatgatgagcagtggtgttatgga----catctttgtacatttccctt--tgtacatgttgag-------tt-cgagg-tgtaaatttaaagtggcat------------------------------------------------------ATGTGAAAGTGGC--------CATGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3346980 261 - 13651311 atgtatacagagagagggtattgtcttataag-ctttgtaaatatacatcatgagcacatcattcttcatttgcttttttTTT-T--CCCCACTCTCCATTGTTCATA-TCCATCTGTACCCGTATCCATAAAgatgaacagttaggatctttccagcttttggctgtgatgagcagtggggttacgga----catctttgtacatttcccgt--tgtacgtgtggag-------tt-cgagg-tgtacatttaaagtggcat------------------------------------------------------ATGTGAAAGGGGC--------CATGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3441367 261 - 108792865 GTGCATAGAGAGAGA--GTATTGTCTTACAAG-CTTTGTAAATGCACATCGTAAGCACATCTTTCTTCATTTAC---TTTTTT-T--TCCCGATtaccatcattcatt-tcaatccgtatctgtatctat-agaatgaacaattaggatctttccaacctttggccatgatgagcaaaggtgttatgga----cacccttgtacatttctctt--tgtacatgttcaggaatttctc-taaag-tataaattcaaggtgggat-------------------------------------------------------tgtgaaggtgac--------catgc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3094524 264 - 7082604 GTGCAGAGAGAGAGAGCGTATTGTCTTACAAG-CTTTGTAAATGTACATCGTGAGCACATCTTTTTTCATTTGG---TTTTAT-T--TCCCAACtaccattattcattatcaatccgtatctgtatctat-aggatgaacagttaggatctttccaacctttggccattatgagcaatggtgttacggg----cacccttgtacatttctctt--tgtacatgttcaggaatttctc-taagg-tataaattcaaggtgggat-------------------------------------------------------tgtgaaagtgac--------catgc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580689 260 + 5243153 ATGCATATATAGAGAGAGTATTGTCTTACAAG-CTTTGTAAATGTACATCGTGAGCACATCT---TTCATTTGC---TTTTTT-T--CCCCGATtaccattattcata-tcaatccgtatctgcatctat-aggatgaacaattaggatctttccaacctttggccattatgagcaatggtgttatgga----cacccttgtacatttctctt--tgtacatgttcaggaatttctc-taagg-tataaattcaaggtgggat-------------------------------------------------------tgtgaaggtgac--------catgc i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1915522 261 - 1938448 ATGCATAGAGAGAGA--GTATTGTCTTACAAG-CTTTGTAAATGTGCATCGTGAGCACATCTTTCTTCATTTGC---TCTTTT-T--TCCCGATtaccattattcata-tcaatccgtatctgtatctat-atgatgaacgattaggatctttccagcctttggccattacgagcagtggtgttatgga----cacccttgtacatttctctt--tatacatgttcaggaatttctc-taagg-tataaattcaaggtgggtt-------------------------------------------------------tgTGaaagtgac--------cacgc i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2026894 321 + 64289059 --AAATTTAATAAAACTTTATTGTCTGGTAGA-CTT--TAAATGCACCTAATG-GCACATCTGTCTTCTTTGGG--CTTCTTC-G--TCCCAGTTAACGTTAATTGTT-T------GCACACACGTCCATGGGGATGGACACGAGGGACCCTTCTGGCTCTGGGCTGTGACGCACACCTCAGTCAGGAGCAACcatccttttttgggtctctc--tgcatgtgttcttggatttctc-taaga-catacattgagtgtgccattgcctggttgcatgacatttgtattttcaattttatttttttgaggttttatttatgtgacagagacagagagtacatgc i canFam3.chr17 I 348 I 132 s dasNov3.JH580157 553521 303 + 2232271 atttatataa--------ctttatcttgtatg-ctttttaaatgtacatcataatcatatctttcttgattttg--ctttttt-c--ccacacttaacattattccta-tcc------acatgtacccataaggatgattaattaggatctttccaa-ttttggctattat----aatgatgctataaa----aatctttatacattttgctttatgtatatgttcaagaatttttc-tcagg-tataaattaaaagtgaaattgctaggttacatggcatttgtattttcaactttaaaagaaacagccaaattgctttccaaagtaac--------tgtac i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2633952 844 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e otoGar3.GL873658 2523198 385 + 5252280 I a score=503973.000000 s hg38.chr2_KI270769v1_alt 40374 60 + 120616 TAATTTC------------------------------------------------CACTCCCAGCCACAGCCTGT----CAGTTTGT-TTCCCCACTCTTGTGTAAC--TAAAGA s panTro5.chr2A 3492659 58 + 111504155 TAATTTC------------------------------------------------CA--TCCAGCCACAGCCTGT----CAGTTTGT-TTCCC--ATCTTGTGTAACTATAAAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3362874 60 + 114371477 taatttc------------------------------------------------cactcctagccacagcctgt----cagtttgt-ttccccactcttgtgtaac--taaaga i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 238546 60 + 637652 taatttc------------------------------------------------cactcccagccacagcctgt----cagtttgt-ttccccactcttgtgtaac--taaaga i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033888 61 + 81552678 taatttc------------------------------------------------cactgccagccacagcctgt----cagtttctgtttcccactcttgtataac--taaaga i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3296387 60 + 108979918 TAATTTC------------------------------------------------CACTCCCAGCCACAGCCTGT----GTTTCTGT-CCCTCCACTCTTGTATAAG--TAAAGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5009143 60 - 111193037 taatttc------------------------------------------------cactcccagccacagcctgt----gtttctgt-ccctccactcttgtataag--taaaga i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403927 60 + 3644372 TAATTTC------------------------------------------------CACTCCCAGCCACAGCCTGT----GTTTCTGT-CCCTCCACTCTTGTATAAG--TAAAGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3358547 60 - 10304083 TAATTTC------------------------------------------------CACTCCCAGCCACAGCCTGT----GTTTCTGT-CCCTCCACTCTTGTATAAG--TAAAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3441403 60 - 107702431 taatttc------------------------------------------------cactcccagccacagcctgt----gtttctgt-ccctccactcttgtatgag--taaaga i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 986992 60 + 1565135 TAATTTC------------------------------------------------CACTCCCAGCCACAGCCTGT----GTTTCTGT-CCCTCCACTCTTGTATAAG--TAAAGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347241 62 - 13651311 TAATTTC------------------------------------------------CACTCCCAGCCACAGCCTGT--CAGTTTCTGT-CCCTCCACTCTTGTATAAG--TAAAGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3441628 62 - 108792865 tcatttc------------------------------------------------cactcccagccacagtgtgt--gagtttctgt-ttccccactcttgtatggc--taaaga i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3094788 62 - 7082604 taatttc------------------------------------------------cactcccagccacagtgtgt--gagtttctgt-ttcctcactcttgtatgac--taaaga i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 580949 62 + 5243153 taatttc------------------------------------------------cactcctagccacagtgtgt--gagtttctgt-ttccccactcttgtatgac--taaaga i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1915783 62 - 1938448 taatttc------------------------------------------------cactcccagccacagtgtgt--gagtttctgt-ttccccactcttgtatgac--taaaga i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2027347 112 + 64289059 tattttcaatgttataagaaacagtgaagtttctttccaaagcagctatcgtagacacccccaataccagtgtcttcgagtttctgt-ttcccaacctgtgactcaa--tcaatt i canFam3.chr17 I 132 I 1 s dasNov3.JH580157 553824 64 + 2232271 taattta------------------------------------------------cactcccaacatcagtgtagaaaagcccctct-ccccccacttttttattag--taagta i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2633952 844 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e otoGar3.GL873658 2523198 385 + 5252280 I a score=2386018.000000 s hg38.chr2_KI270769v1_alt 40434 232 + 120616 TTGTCAGACTT-TCACCAGTGAGTCTAAAATTCT-ACCTCCTGTCGCAACTGAC---------------------------G-TCTTTCTGATTTCTG----CCGAAtt--atgtgtcctt-----------tgtctgtcggagtctcctctt-tggtgactcactctttcataatcttggcctgtatttctgttgggttatct--ttgttattaa-ttggttgaggttcattctatat-agtaggtatttaatccttcatctgttttgtattt-gggaaatatt s panTro5.chr2A 3492717 231 + 111504155 TTGTCAGA-TT-TCACCAGTGAGTCT-AAATTCT-ACCTCCTGTCGCAACTGAC---------------------------GTTCTTTCTGATTTCTG----CTGAATT--ATGTGTCCTT----------GTGTCTGTCGGAGTTTTCTCTTCTGGTGACTCACTCTTTCATAAGCTGTGCCTGTATTTCTA-TGGGTTATCT--TTGTTATTAATTTTGTTGA--TTCATTCTATAT-AGTAGGTATTTAAT-CTTCATCTGTTTTGTATTTCGGGAAATATT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3362934 232 + 114371477 ttgtcagactt-tcaccagtgagtctaaaattct-acctcctgtcgcaactgac---------------------------g-tctttctgatttctg----ctgaatt--atgtgtcctt-----------tgtctgtcggagtttcctctt-tggtgactcactctttcataagcttggcctgtatttctattgggttatct--ttgttattaa-ttggttgaggttcattctatat-agtaggtatttaatccttcatctgttttgtattt-gggaaatatt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 238606 231 + 637652 ttgtcagactt-tcaccagtgagtctaaaattct-acctcctgtcgcaactgac---------------------------g-tctttctgatttctg----ccgaatt--atgtgtcctt-----------tgtctgtcggagtttcctctt-tggtgactcactctttcataatcttggcctgtatttctattgggttatct--ttgttattaa-ttggttgagg-tcattctatat-agtaggtattTAATCCTTCATCTGTTTTGTATTT-GGGAAATATT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3033949 232 + 81552678 ttgtcagactt-tcaccagtgagtctaaaactct-acctcctgtcgcaactgac---------------------------g-tctttctgatttctg----ccgaatt--atgtgtcctt-----------tgtctgtcggagtttcctctt-tggtgactcactctttcataatcttggcctgtatttttattgggttatct--ttgttattaa-ttggttgaggttcatattatat-aGTAGGTATTTAATCCTTCATCTGTTTTGTATTT-GGGAAATATT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3296447 228 + 108979918 TTGTCAGACTT-TCACCAGTGAGTCTAAAATTCT-ACCTCCTGTCGCAACTGAC---------------------------G-TCTTTCTGATTTCTG----CCGAAtt--atgtgtcctt---------------tgtcggaatttcctcct-tggtgactcactctttcataatcttggcctgtatttctattgggttatct--ttgttattaa-ttgcttgaggttcattctatat-agtaggtattTAATCCTTCATCTGTTTTGTATTT-GGGAAATATT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5009203 228 - 111193037 ttgtcagactt-tcaccagtgagtctaaaattct-acctcctgtcgcaactgac---------------------------g-tctttctgatttctg----ccgaatt--atgtgtcctt---------------tgtcggaatttcctcct-tggtgactcactctttcataatcttggcctgtatttctattgggttatct--ttgttattaa-ttgcttgaggttcattctatat-AGTAGGTATTTAATCCTTCATCTGTTTTGTATTT-GGGAAATATT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3403987 228 + 3644372 TTGTCAGACTT-TCACCAGTGAGTCTAAAATTCT-ACCTCCTGTCGCAACTGAC---------------------------G-TCTTTCTGATTTCTG----CCCAAtt--atgtgtcctt---------------tgtcggaatttcctcct-tggtgactcactctttcataatcttggcctgtatttctattgggttatct--ttgttattaa-ttgcttgaggttcattctatat-agtaggtattTAATCCTTCATCTGTTTTGTATTT-GGGAAATATT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3358607 228 - 10304083 TTGTCAGACTT-TCACCAGTGAGTCTAAAATTCT-ACCTCCTGTCGCAACTGAC---------------------------G-TCTTTCTGATTTCTG----CCGAATT--ATGTGTCCTT---------------TGTCGGAACTTCCTCCT-TGGTGACTCACTCTTTCATAATCTTGGCCTGTATTTCTATTGGGTTATCT--TTGTTATTAA-TTGCTTGAGGTTCATTCTATAT-AGTAGGTATTTAATCCTTCATCTGTTTTGTATTT-GGGAACTATT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3441463 228 - 107702431 ttgtcagactt-tcaccagtgagtctaaaattct-acctcctgtcacaactgac---------------------------g-tctttctgatttctg----ccgaatt--atgtgtcctt---------------tgtcggaatttcctcct-tggtgactcactctttcataatcttggcctgtatttctattgggttatct--ttgttattaa-ttgcttgaggttcattctatat-AGTAGGTATTTAATCCTTCATCTGTTTTGTATTT-GGGAAATATT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 987052 228 + 1565135 TTGTCAGACTT-TCACCAGTGAGTCTAAAATTCT-ACCTCCTGTCGCAACTGAC---------------------------G-TCTTTCTGATTTCTG----CCGAAtt--atgtgtcctt---------------tgtctgaatttcctcct-tggtgactcactctttcataatcttggcctgtatttctattgggttatct--ttgttattga-ttgcttgaggttcattctatat-agtaggtattTAATCCTTCATCTGTTTTGTATTT-GGGAACTATT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347303 221 - 13651311 TTGTCAGACTT-TCACCAGTGAGTCTAAAATTCT-ACCTCCTGTCGCAACTGAC---------------------------G-TC-------TTTCTG----CCGAATT--ATGTGTCCTT---------------TGTCGgggtttcctcct-tggtgactcactctttcataatcttggcctgtatttctattgggttatct--ttgttattaa-ttgcttgaggttcattctgtat-AGTAGGTATTTAATCCTTCATCTGTTTTGTGTTT-GGGAAATATT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3441690 227 - 108792865 ttgtcagactt-tcaccagtgggtctaaaattct-acctcCTGTCGCAAATTAG---------------------------G-TCTTTCTGATTTCTG----CTGAATT--CTGAGTCCTT-----------CGTCTG-CAGAGTTTATTCTT-CGGTGACTCACTCTTTGATAATCTTGGCCTG----TCTGTTGGGTTATCT--TTGTTATTAA-TTGGTTGGGTTTCATTCTACAT-GGTAGGTATTTAATCCTTCATTTGTTTCGTATTT-GGGAAACATT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3094850 232 - 7082604 ttgtcagactt-tcaccagtgggtctaaaattct-acctcctgtcacaaattag---------------------------g-tctttctgatttctG----CCGAATT--CTGTGTCCTT-----------CGTCTG-CAGACtttcctctt-cggtgactcactctttgataatcttggcctgtatttctgttgggttatct--ttgttattaa-ttggttggggttcattctacatAAGTAGGTATTTAATCCTTCATTCGTTTCATATTT-GGGAAATATT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581011 231 + 5243153 ttgtcagactt-tcaccagtgggtctaaaattct-acctcCTGTCGCAAATTAG---------------------------G-TCTTTCTGATTTCTG----CCGAATT--CTGTGTCCTT-----------CGCCTG-CAGAGTTTCCTCTG-CGGTGACTCACTCTTTGATCATCTTGGCCTGTATTTCTGTTGGGTTATCT--TTGTTCTTAC-TTGGTTGGGGTTCATTCTACAT-AGTAGGTATTTAGTCCTTCATTTGTTTCGTATTT-GGGAAATATT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1915845 225 - 1938448 ttgtcagactt-tcaCCAGTGTGTCTAAAATTCT-ACCTCCTGTCGCAAATTAG---------------------------G-TCTTTCTGATTTCTG----CCGAATT--CTGTGTCCTT--------------CTG-CAG--TTTCCTCTT-CAGTAACTCACTCTTTGATAATCTTGGCC-GTATTTCTGTTGGGTTATAT--TTGTTATTAA-TTGGTTGGGGTTCATTCTACAT-AGTAGGTATTTAATCCTTCATTCGTTTCGTATTT-GGGAAATATT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2523583 242 + 5252280 TTGTCAGAC------CTGGTGGGTCTGAAGTTCT-GCCTCTTGTCGTAGATTCTATTCTACCTAATTCTTGGGTAGAATTAG-TCTTTCTGATTTATA----CCCAAGTCCCTGTGTCCTT---------------TCGCTGGAGTTTCTCTT-CCGGGCCTCCCTCTCTCATAATGTCGGCCGCTGCTTCTAGCGAGTTATTT--TTTGT-TTGA-TTTGTTGAGGTTCTTCCTATAT-TTTAGGTATTTGATACTT----TGTTGTGTATTT-TAGAA----- i otoGar3.GL873658 I 385 C 0 s canFam3.chr17 2027460 225 + 64289059 tggtcagacttctctctggagggtctgaaattctaacctcatg--------------------------------------t-tctcacttaatgcgt----ctgagtg--aagtgcctttgtatgtgaaggtgggtattggaatttcctctc-cgg-ggctca--ctgtcaggatctttgcttgtgttcccgttgggttattt--cttatactga-tttgtggcagttctttacatat-tTCTAGCATTTTATATTTTGTCTTTTATAAATCT-TGCA------ i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 553888 220 + 2232271 ttctcaaactt-ttataggtggatctgaaatcct-accttttatattagtgtac---------------------------a-t-tttctgatttctaaattccctatt--tcatatattt---------attatttgttggggtttcctctt-tggtgaattactttttcatattccttgtccat-tttttgttgcattgtcttctcattattga-tttgttgag------------t-------tatttaagcttttgcctgttatgtatct-tgcaaatatc i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2633952 844 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I a score=1454256.000000 s hg38.chr2_KI270769v1_alt 40666 122 + 120616 aatatcttctcccattctgggaaata-ctattttcaACCCTG--AAAAAATAATTCTAGTTT-----AAAAATACAAACATAACCTTTTTTGTTCGCAACATGACATGTTTTAGGAGTA---TCTTCTTTATT s panTro5.chr2A 3492948 115 + 111504155 AATA--TTTTCCCATTCTGGGAAATA-CTATTTTCAACCCTG---AAAAATAATT-TAATTT------AAAATAC-AACATAACC-TTTTTGTTCGCAACATGACATGTTTTAGGAGTA---TCTTCTTTATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363166 122 + 114371477 aatatcttctcccattctgGGAAATA-CTATTTTCAACCCTG--AAAAAATAATTCTAATTT-----AAAAATACAAACATAACCTTTTTTGTTCGCAACATGACATGTTTTAGGAGTA---TCTTCTTTATT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 238837 122 + 637652 AATATCTTCTCCCATTCTGGGAAATA-CTATTTTCAACCCTG--AAAAAATAATTCTAATTT-----AAAAATACAAACATAACCTTTTTTGTTTGCGACATGACATGTTTTAGGAGTA---TCTTCTTTATT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3034181 122 + 81552678 AATATCTTCTCTCATTCTGGGAAATA-CCATTTTCAACCCTG--AAAAAATAATTCTAATTT-----AAAAATACAAACATAACCTTTTTTGTTTGCAACATAACACGTTTTAGGAGTA---TCTTCTTTATT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3296675 122 + 108979918 AATATCTTGTCCCATTCTGGGAAATA-CTATTTGCAACCCTG--AAAAAAAAATTCTAATTT-----AAAAATACAAACATAACCTTTTTTGTTTGCAACATAACCCGTTTTAGGAGTA---TCTTCTTGATT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5009431 122 - 111193037 AATATCTTGTCCCATTCTGGGAAATA-CTATTTGCAACCCTG--AAAAAAAAATTCTAATTT-----AAAAATACAAACATAACCTTTTTTGTTTGCAACATAACCCGTTTTAGGAGTA---TCTTCTTGATT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404215 122 + 3644372 AATATCTTGTCCCATTCTGGGAAATA-CTATTTGCAACCCTG--AAAAAAAAATTCTAATTT-----AAAAATACAAACATAACCTTTTTTGTTTGCAACATAACCCGTTTTAGGAGTA---TCTTCTTGATT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3358835 122 - 10304083 AATATCTTGTCCCATTCTGGGAAATA-CTATTTTCAACCCTG--AAAAAAAAATTCTAATTT-----AAAAATACAAACATAACCTTTTTTGTTTGCAACATAACCCGTTTTAGGAGTA---TCTTTTTGATT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3441691 122 - 107702431 AATATCTTGTCCCATTCTGGGAAATA-CTATTTGCAACCCTG--AAAAAAAAATTCTAATTT-----AAAAATACAAACATAACCTTTTTTGTTTGCAACATAACCCGTTTTAGGAGTA---TCTTCTTGATT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 987280 122 + 1565135 AATATCTTGTCCCATTCTGGGAAATA-CTATTTTCAACCCTG--AAAAAAAAATTCTAATTT-----AAAAATACAAACATAACCTTTTTTGTTTGCAACATAACCCGTTTTAGGAGTA---TCTTTTTGATT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347524 121 - 13651311 AATATCTTCTCCCATTCTGGGAAATA-CTATTTGCAACCCTG---AAAAAAAATTCTAATTT-----AAAAATACAAACATAACCTTTTTTGTTTGCAACATAACACATTTTAGGAGTT---TCTTCTTGATT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3441917 122 - 108792865 AATATATGCTCCCATTCTGGGAAATA-CTATCTTCAACCCTG--AAAAAAAAATTCTAATTT-----AAAAGTACAAACATAACCTTTTTTGTTTGCAATGTAACATGTTTTAGGAGTA---TTTTCTTGAGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095082 124 - 7082604 AATATATTCTCCCATTCTGGGAAATA-CTATCTTCAACCCTGGAAAAAAAAAATTCTAATTT-----AAAAGTGCAAACATAACCTTTTTTGTTTGCAACGTAACACATTTTAGGAGTA---CCTTCTTGAGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581242 121 + 5243153 AATATGTTCTCGCATTCTGGGAAATA-CTATCTTCAACCGTG---AAAAAAAATTCTAATTT-----AAAAGTACAGACATAACCTTTTTTGTTTGCAACGTAACACGTTTTAGGAGTA---TCTTCTTGAGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916070 122 - 1938448 AATATATTCTCCCATTCTGGGAAATA-TTATCTTCAACCCTG--AAAACAAAATTCTAATTT-----AAAAGTACAAACATAACCTTTTTTGTTTGCAACGTAATAGGTTTTAGGAGTA---TCTTCTTGAGT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2634796 117 - 159902609 AATATTTTCTCACCTTCTGGGAAATA----TTTCCAACTCTG----AAAAAAATTCTAATTT-----AAAAATACCAACATAACCATTTTAGTTTGAAAAGTAACACATTTTAGGAGTA---TCGTCTTCATT i micMur3.chr8 I 844 C 0 s otoGar3.GL873658 2523825 116 + 5252280 --TGTTCTCCTACATTCTAGGAAATAATTGTTTTCAACCCTG-------AAAATGCTAATTT-----AAAAATACCAACATAATGATTTTGGTTCGCCAAGTAACACATTTTAAGAATA---CTGTCTTTATT i otoGar3.GL873658 C 0 I 263 s canFam3.chr17 2027685 112 + 64289059 AGTATCTTCTCCT------GGGAGTG-TTATTTCTAACCCtt--aaaaaata----taatta-----aaatttaCCAACATAACCTTTTTTGTGTGCAGCCTATCCCATTTTAGGATTGTGCTCACCTTG--- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 554108 123 + 2232271 ----ttctctcccattctggggAATA-TTATTTTTAACCCTG--AGAAGAATTTTTAAAACTTAAAAAAAAATACCAATATAATCTTTAGGGGGAGGAAACCTACACATTTTCAAAGTA---TCTTCTTGTTT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I a score=389867.000000 s hg38.chr2_KI270769v1_alt 40788 27 + 120616 CCACATAC-TGTTA-TATCAGGAATAATA s panTro5.chr2A 3493063 29 + 111504155 CCACATACTTGTTATTATCAAGAATAATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363288 27 + 114371477 CCACATAC-TGTTA-TATCAAGAATAATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 238959 27 + 637652 CTACATAC-TGTTA-TATCAGGAATAATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3034303 27 + 81552678 CCACATAC-TGTTA-TATCAGGAATAATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3296797 27 + 108979918 CCACATAC-TGTTA-TATCAGGAATAATG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5009553 27 - 111193037 CCACATAC-TGTTA-TATCAGGAATAATG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404337 27 + 3644372 CCACATAC-TGTTA-TATCAGGAATAATG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3358957 27 - 10304083 CCACATAC-TGTTA-TATCAGGAATAATA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3441813 27 - 107702431 CCACATAC-TGTTA-TATCAGGAATAATA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 987402 27 + 1565135 CCACATAC-TGTTA-TATCAGGAATAATA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347645 27 - 13651311 CCACGTAC-TGTTA-TATCAGGAATAATA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442039 27 - 108792865 CCACATAC-TGTTA-TATCAGGAATAATA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095206 27 - 7082604 CCACATAC-CGTTA-TATCAGGAATAATA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581363 27 + 5243153 CCACATAC-TGTTA-TATCAGGAGTAATA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916192 27 - 1938448 CCACATAC-TGTTA-TATCAGGAATAATA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2634913 27 - 159902609 CCACATAC-CATTA-CGTCAGGAATGATA i micMur3.chr8 C 0 I 367 s otoGar3.GL873658 2524204 27 + 5252280 CCACACAC-TGTTA-TATCAGGAATGATA i otoGar3.GL873658 I 263 C 0 s canFam3.chr17 2027797 27 + 64289059 CTTCCTCG-TGTCA-TATCAGAAATAGTA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 554231 27 + 2232271 TCACATAC-CATTA-TATCAGACATAATA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I a score=919789.000000 s hg38.chr2_KI270769v1_alt 40815 90 + 120616 AATGCAAAGAAATCATG--------------CCTATGTCAT--------TGCCAAGTAGGCTGAGACAAGTAAAGACATTTACCAGACAGCTTTCCAAAACG-TTTCCTAAGG--- s panTro5.chr2A 3493092 87 + 111504155 AATGCAAAGAAATCATG--------------CCTATGTCAT--------TGCCAAGTAGGCTGAGACAAGAAAAGACATTTACCAGACAG-TTTCCAAAACG--TTCCTAA-G--- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363315 90 + 114371477 AATGCAAAGAAATCATG--------------CCTATGTCAT--------TGCCAAGTAGGCTGAGACAAGTAAAGACATTTACCAGACAGCTTTCCAAAACG-TTTCCTAAGG--- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 238986 90 + 637652 AATGCAAAGAAATCATG--------------CCTATGTCAT--------TGCCAAGTAGGCTGAGACAAGTAAAGACATTTACCAGACAGCTTTCCAAAACG-TTTCCTAAGG--- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3034330 90 + 81552678 AATGCAAAGAAATCATG--------------CCTATGTCAT--------TGCCAAGTAGGCTGAGACAAGTAAAGACATTTACCAGACAGCTTTCCAGAACG-TTTGCTAAGG--- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3296824 90 + 108979918 AATGCAAAGAAATCATG--------------CCTTTGTCAT--------TCCCAAGTAGGCTGAGACAAGTAAAGACATTTACCAGACAGCTTTCCAGAACG-TTTCCTAAGG--- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5009580 90 - 111193037 AATGCAAAGAAATCATG--------------CCTTTGTCAT--------TCCCAAGTAGGCTGAGACAAGTAAAGACATTTACCAGACAGCTTTCCAGAACG-TTTCCTAAGG--- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404364 90 + 3644372 AATGCAAAGAAATCATG--------------CCTTTGTCAT--------TCCCAAGTAGGCTGAGACAAGTAAAGACATTTACCAGACAGCTTTCCAGAACG-TTTCCTAAGG--- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3358984 90 - 10304083 AATGCAAAGAAATCATG--------------CCTTTGTCAT--------TCCCAAGTAGGCTGAGACAAGTAAAGACATTTACCAGACAGCTTTCCAGAATG-TTTCCTAAGG--- i cerAty1.NW_012000820v1 C 0 I 595 s chlSab2.chr14 3441840 90 - 107702431 AATGCAAAGAAATCATG--------------CCTTTGTCAT--------TCCCAAGTAGGCTGAGACAAGTAAAGACATTTACCAGACAGCTTTCCAGAACG-TTTCCTAAGG--- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 987429 90 + 1565135 AATGCAAAGAAATCATG--------------CCTTTGTCAT--------TCCCAAGTAGGCTGAGACAAGTAAAGACATTTACCAGACAGCTTTCCAGAATG-TTTCCTAAGG--- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347672 90 - 13651311 AATGCAAAGAAATCGTG--------------CCTTTGTCAT--------TCCCAAGTAGGCTGAGACAAGTAAAGACATTTACCAGACAGCTTTCAAGAACG-TTTCCTAAGG--- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442066 90 - 108792865 AATGCAGTGCAGTCGTG--------------CCTTTGTCAT--------TGCCGAGTAGGCTGAGACAGGTAAGGTCATTTAGCAGACAGCTCTCGGAAACG-TTTCCTGAGG--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095233 90 - 7082604 AATGCAAAGCAATCATG--------------CCTTTGTCAT--------TGCCAAGTAGGCTGAGACAAGTGAGGGCATTTGGCAGACAGCTCTCAGAAACG-TTTCCTGAGG--- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581390 88 + 5243153 AATGCAAAGCAGTCATG---------------CTTTGTCAT--------TGCCAAGTAGGCTGAGACAGGTAGGGACA-TTGGCAGACGGCTCTCAGAAACG-TCTCCTGAGG--- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916219 90 - 1938448 AATGCAAAGCAATCATG--------------CCTTTGTCAT--------TGCCAAGTAGGCTGAGACAGGTAAGGACATTTAGCAGACAGCTCTCGGAAACA-TTTCCTGAGG--- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2524231 104 + 5252280 AATGGACAGAAATTATAAACTGATGCAAACAATCCTGTCCT--------GGCCTGGTCAGTTGAGGTAAGTGAGGGCGTCCATGA-ACCGCTTTCCAGAACACTTTCCTAACT--- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2027824 97 + 64289059 AGTGGAGACTGAGCACG--------------CCAGTGTCATTGGAGCGGTGCCCTGCCGGCTAGAACGGATGAAG-CACCTACCATCCAGATGTCTGAAACA-TTTCCTTGCT--- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 554258 100 + 2232271 CATACAAGATAATTATG--------------TCATTATTTTGGGATTA-TGCCATGTAGATTGAAACAGGTGAAGATATCTACCATATAGCTTTTTAAAAAA-TTTGTTTCTATCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I a score=61606.000000 s hg38.chr2_KI270769v1_alt 40905 5 + 120616 GAGCT s panTro5.chr2A 3493179 5 + 111504155 GAGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363405 5 + 114371477 GAGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239076 5 + 637652 GAGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3034420 5 + 81552678 GAGCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3296914 5 + 108979918 GAGCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5009670 5 - 111193037 GAGCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404454 5 + 3644372 GAGTT i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3441930 5 - 107702431 GAGCT i chlSab2.chr14 C 0 I 430 s manLeu1.NW_012104432v1 987519 5 + 1565135 GAGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347762 5 - 13651311 GAGCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442156 5 - 108792865 GAGCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095323 5 - 7082604 GAGCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581478 5 + 5243153 GAGCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916309 5 - 1938448 GAGCT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2524335 5 + 5252280 GAGCT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2027921 5 + 64289059 GAGCT i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 554358 5 + 2232271 AAATT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e cerAty1.NW_012000820v1 3359074 595 - 10304083 I a score=4190.000000 s hg38.chr2_KI270769v1_alt 40910 1 + 120616 G s panTro5.chr2A 3493184 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363410 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239081 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3034425 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3442161 1 - 108792865 G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095328 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581483 1 + 5243153 G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916314 1 - 1938448 G i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2524340 1 + 5252280 G i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 554363 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e canFam3.chr17 2027926 1 + 64289059 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e colAng1.NW_012118821v1 3347767 0 - 13651311 C e manLeu1.NW_012104432v1 987524 0 + 1565135 C e chlSab2.chr14 3441935 430 - 107702431 I e cerAty1.NW_012000820v1 3359074 595 - 10304083 I e macNem1.NW_012011978v1 3404459 0 + 3644372 C e macFas5.chr13 5009675 0 - 111193037 C e rheMac8.chr13 3296919 0 + 108979918 C a score=115825.000000 s hg38.chr2_KI270769v1_alt 40911 11 + 120616 CTGCACACTGT s panTro5.chr2A 3493185 11 + 111504155 CTGCACACTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363411 11 + 114371477 CTGCACACTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239082 11 + 637652 CTGCACACTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3034426 11 + 81552678 CTGCACGCTGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3296919 11 + 108979918 CTGCACGCTGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5009675 11 - 111193037 CTGCACACTGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404459 11 + 3644372 CTGCACGCTGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359669 11 - 10304083 CTGCACACTGT i cerAty1.NW_012000820v1 I 595 C 0 s chlSab2.chr14 3442365 11 - 107702431 CTGCACACTGT i chlSab2.chr14 I 430 C 0 s manLeu1.NW_012104432v1 987524 11 + 1565135 CTGCACACTGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347767 11 - 13651311 CTGCACGCTGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442162 11 - 108792865 TTGCACACTGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095329 11 - 7082604 CTGCACACTGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581484 11 + 5243153 CTGCCCCCTGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916315 11 - 1938448 CTGCACACCGT i aotNan1.NW_018507213v1 C 0 I 1 s otoGar3.GL873658 2524341 8 + 5252280 CTGTGCCC--- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2027927 11 + 64289059 CAGTGCACCAT i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 554364 11 + 2232271 CAAAGCACTAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I a score=106440.000000 s hg38.chr2_KI270769v1_alt 40922 25 + 120616 TGCTGGGACCTTCCGCTGG-------------GTGTG-------------------------------------------G s panTro5.chr2A 3493196 22 + 111504155 TGCTGCGGACCTACGCTGG-------------GT----------------------------------------------G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363422 67 + 114371477 TGCTGGGACCTTCCGCTGG-------------GTGTGAAGGAGCTCTGCACACTGTTGTTGCGATCATCCACTGGGTGT-G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239093 68 + 637652 TGCTGGGACCGTCCGCTGGGTGTGGAGGAGCTCTGCA-------------CACTGTTGCTGGGACCGTCCGCTGGGTGTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3034437 25 + 81552678 TGCTGGGACCCTGCGCTGG-------------GTGTG-------------------------------------------G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3296930 25 + 108979918 TGCTGGGACCGTCCGCTGG-------------GTATG-------------------------------------------G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5009686 25 - 111193037 TGCTGGGACCGTCCGCTGG-------------GTATG-------------------------------------------G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404470 25 + 3644372 TGCTGGGACCGTCCGCTGG-------------GTGTG-------------------------------------------G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359680 24 - 10304083 TGCTGGGACCCTCCGCTGG-------------GTGT--------------------------------------------G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442376 24 - 107702431 TGCTGGGACAGTCCGCTGG-------------GTGT--------------------------------------------G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 987535 25 + 1565135 TGCCAGGACCATCCGCTGG-------------GTATG-------------------------------------------G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347778 24 - 13651311 TGCTGGGACAGTCCGCTGG-------------GTGT--------------------------------------------G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442173 22 - 108792865 ---TGGGACCGTCCTCTGA-------------GCATG-------------------------------------------G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095340 22 - 7082604 ---TGGGACCGTCCGCTGG-------------GCGTG-------------------------------------------G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581495 22 + 5243153 ---TGGGACCATCCGCTGG-------------GCGTG-------------------------------------------G i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2524349 25 + 5252280 TGCTCAGACCAGCTGCTGG-------------GTGTG-------------------------------------------G i otoGar3.GL873658 C 0 I 663 s canFam3.chr17 2027938 25 + 64289059 TGCTGTGACCACCCCGTGG-------------GCGTA-------------------------------------------G i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 554375 7 + 2232271 TGCTATG-------------------------------------------------------------------------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e aotNan1.NW_018507213v1 1916326 1 - 1938448 I a score=8323.000000 s hg38.chr2_KI270769v1_alt 40947 1 + 120616 G s panTro5.chr2A 3493218 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363489 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239161 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3034462 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3296955 1 + 108979918 G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5009711 1 - 111193037 G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404495 1 + 3644372 G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359704 1 - 10304083 G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442400 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 987560 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347802 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442195 1 - 108792865 G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095362 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581517 1 + 5243153 G i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2027963 1 + 64289059 A i canFam3.chr17 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e dasNov3.JH580157 554382 0 + 2232271 C e otoGar3.GL873658 2524374 663 + 5252280 I e aotNan1.NW_018507213v1 1916326 1 - 1938448 I a score=76349.000000 s hg38.chr2_KI270769v1_alt 40948 10 + 120616 AGGAGCTCTG s panTro5.chr2A 3493219 10 + 111504155 AGGAGCTCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363490 10 + 114371477 AGGAGCTCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239162 10 + 637652 AGGAGCTCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3034463 10 + 81552678 AGGAGCTCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3296956 10 + 108979918 AGGAGCTCTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5009712 10 - 111193037 AGGAGCTCTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404496 10 + 3644372 AGGAGCTCTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359705 10 - 10304083 AGGAGCTCTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442401 10 - 107702431 AGGAGCTCTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 987561 10 + 1565135 AGGAGCTCTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347803 10 - 13651311 AGGAGCTCTG i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 581518 10 + 5243153 AGGAGCTCTG i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2027964 9 + 64289059 AGTAGCTTT- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e saiBol1.JH378218 3095363 0 - 7082604 C e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e dasNov3.JH580157 554382 0 + 2232271 C e otoGar3.GL873658 2524374 663 + 5252280 I e aotNan1.NW_018507213v1 1916326 1 - 1938448 I e calJac3.chr14 3442196 0 - 108792865 C a score=23870.000000 s hg38.chr2_KI270769v1_alt 40958 4 + 120616 CACA s panTro5.chr2A 3493229 4 + 111504155 CACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363500 4 + 114371477 CACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239172 4 + 637652 CACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3034473 4 + 81552678 CACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3296966 4 + 108979918 CACA i rheMac8.chr13 C 0 I 861 s macFas5.chr13 5009722 4 - 111193037 CACA i macFas5.chr13 C 0 I 866 s macNem1.NW_012011978v1 3404506 4 + 3644372 CACG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359715 4 - 10304083 CACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442411 4 - 107702431 CACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 987571 4 + 1565135 CACA i manLeu1.NW_012104432v1 C 0 I 3677 s colAng1.NW_012118821v1 3347813 4 - 13651311 CACA i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e canFam3.chr17 2027973 0 + 64289059 C e saiBol1.JH378218 3095363 0 - 7082604 C e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e dasNov3.JH580157 554382 0 + 2232271 C e otoGar3.GL873658 2524374 663 + 5252280 I e cebCap1.NW_016107454v1 581528 0 + 5243153 C e aotNan1.NW_018507213v1 1916326 1 - 1938448 I e calJac3.chr14 3442196 0 - 108792865 C a score=171127.000000 s hg38.chr2_KI270769v1_alt 40962 43 + 120616 CTGTTGCTGGGACCGTCCACTGGGTGT-GGAGGAGC-TCTGCACA s panTro5.chr2A 3493233 43 + 111504155 C-GTTGCTGGGACCATCCATGGCGTGT-GGAGGAGCTTCTGCACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363504 43 + 114371477 CTGTTGTTGGGACCGTCCGCTGGGTGT-GGAGGAGC-TCTGCACG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239176 43 + 637652 CTGTTGCTGGGACCGTCCGCTGGGTGT-GGAGGAGC-TCTGCACA i gorGor5.CYUI01015435v1 C 0 I 603 s nomLeu3.chr19 3034477 44 + 81552678 CTGTTGCCGGGACCGTCCGCTGGGTGTGGGAGGAGC-TCTGCACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3297831 43 + 108979918 CTGTTGCTGGGACCGTCCGCTGGGTGT-GGAGGAGC-TCTGCACG i rheMac8.chr13 I 861 C 0 s macFas5.chr13 5010592 43 - 111193037 CTGTTGCTGGGACTGTCCGCTGGGTGT-GGAGGAGC-TCTGCACG i macFas5.chr13 I 866 C 0 s macNem1.NW_012011978v1 3404510 13 + 3644372 CTATTGCTGGGAC-------------------------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359719 43 - 10304083 CTGTTGCTGGGACCGTCCGCTGGGTGT-GGAGGAGC-TCTGCACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442415 43 - 107702431 CTGTTGCTGGGACCGTCCACTGGGTGT-GGAGGAGC-TCTGCACG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991252 43 + 1565135 CTGTTGCTGGGACCGTCCGCTGGGTGT-GGAGGAGC-TCTGCACA i manLeu1.NW_012104432v1 I 3677 C 0 s colAng1.NW_012118821v1 3347817 44 - 13651311 CTGTTGCTGGGCCCGTCCGCTGGGTATGGGAGGAGC-TCTGCACA i colAng1.NW_012118821v1 C 0 C 0 s canFam3.chr17 2027973 20 + 64289059 -----------------------ATGA-GGAGGATT-AGTAGAAA i canFam3.chr17 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e saiBol1.JH378218 3095363 0 - 7082604 C e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e dasNov3.JH580157 554382 0 + 2232271 C e otoGar3.GL873658 2524374 663 + 5252280 I e cebCap1.NW_016107454v1 581528 0 + 5243153 C e aotNan1.NW_018507213v1 1916326 1 - 1938448 I e calJac3.chr14 3442196 0 - 108792865 C a score=29265.000000 s hg38.chr2_KI270769v1_alt 41005 6 + 120616 CTGTTG s panTro5.chr2A 3493276 6 + 111504155 CTGTTG i panTro5.chr2A C 0 I 6151 s panPan2.chr2A 3363547 6 + 114371477 CTGTTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239822 6 + 637652 CTGTTG i gorGor5.CYUI01015435v1 I 603 C 0 s nomLeu3.chr19 3034521 6 + 81552678 CTGTTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3297874 6 + 108979918 CTGTTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010635 6 - 111193037 CTGTTG i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3359762 6 - 10304083 CTGTTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442458 6 - 107702431 CTGTTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991295 6 + 1565135 CTGTTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347861 6 - 13651311 CTCTTG i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e canFam3.chr17 2027993 0 + 64289059 C e saiBol1.JH378218 3095363 0 - 7082604 C e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e dasNov3.JH580157 554382 0 + 2232271 C e otoGar3.GL873658 2524374 663 + 5252280 I e cebCap1.NW_016107454v1 581528 0 + 5243153 C e aotNan1.NW_018507213v1 1916326 1 - 1938448 I e calJac3.chr14 3442196 0 - 108792865 C e macNem1.NW_012011978v1 3404523 0 + 3644372 C a score=220874.000000 s hg38.chr2_KI270769v1_alt 41011 45 + 120616 TTGGGACCATCCACTGGGTGT-GAAGGAGCTCTGCACGCTGTTGCT s panTro5.chr2A 108008459 46 - 111504155 CTGGGACCATCCACTGGGTGTGGGAGGAGCTCTGCACACTGTTGCT i panTro5.chr2A I 1630 C 0 s panPan2.chr2A 3363553 46 + 114371477 CTGGGACCATCCACTGGGTGTGGGAGGAGCTCTGCACACTGTTGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239828 45 + 637652 CTGGGACCGTCCGCTGGGTGT-GGAGGAGCTCTGCACGCTGTTGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3034527 46 + 81552678 CTGGGACCATCCGCTGGGTGTGGGAGGAGCTCTGCACACTGTTGCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3297880 45 + 108979918 CTGGGACCGTCCGCTGGGTGT-GGAGGAGCTCTGCACGCTGTTGCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010641 45 - 111193037 CTGGGACCGTCCGCTGGGTGT-GGAGGAGCTCTGCACGCTGTTGCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404523 38 + 3644372 -------CGTCCGCTGGGTGT-GGAGGAGCTCTGCACACTGTTGCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359768 45 - 10304083 CTGGGACCCTCCGCTGGGTGT-GGAGGAGCTCTGCACACTGTTGCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442464 45 - 107702431 CTGAGGCCGTCCGCTGGGTGT-GGAGGAGCTCTGCACACTGTTGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991301 45 + 1565135 CTGGGACAGTCCGCTGGGTGT-GGAGGAGCTCTGCACACTGTTGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347867 45 - 13651311 CTGGGCCTGTCCGCTGGGTGT-GGAGGAGCTCTGCACACTCTTGCT i colAng1.NW_012118821v1 C 0 C 0 s canFam3.chr17 2027993 34 + 64289059 --GGGAGCGTGTATAGCACCT-AACGTGCCTCTGTGC--------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 554382 19 + 2232271 ----GACCATCGGCTGGG----GCATG------------------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e saiBol1.JH378218 3095363 0 - 7082604 C e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e otoGar3.GL873658 2524374 663 + 5252280 I e cebCap1.NW_016107454v1 581528 0 + 5243153 C e aotNan1.NW_018507213v1 1916326 1 - 1938448 I e calJac3.chr14 3442196 0 - 108792865 C a score=60800.000000 s hg38.chr2_KI270769v1_alt 41056 9 + 120616 GGGACCGTC s panTro5.chr2A 108008505 9 - 111504155 GGGACCTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363599 9 + 114371477 GGGACCGTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239873 9 + 637652 GGGACCGTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3034573 9 + 81552678 GGGACCGTC i nomLeu3.chr19 C 0 I 747 s rheMac8.chr13 3297925 9 + 108979918 GGGACCGTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010686 9 - 111193037 GGGACCGTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404561 9 + 3644372 GGGACCGTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359813 9 - 10304083 GGGACCCTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442509 9 - 107702431 GGGGCCGTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991346 9 + 1565135 GGGACCGTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347912 9 - 13651311 GGGACCGTT i colAng1.NW_012118821v1 C 0 C 0 s aotNan1.NW_018507213v1 1916327 9 - 1938448 GGGACCGTC i aotNan1.NW_018507213v1 I 1 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e canFam3.chr17 2028027 0 + 64289059 C e saiBol1.JH378218 3095363 0 - 7082604 C e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e dasNov3.JH580157 554401 0 + 2232271 C e otoGar3.GL873658 2524374 663 + 5252280 I e cebCap1.NW_016107454v1 581528 0 + 5243153 C e calJac3.chr14 3442196 0 - 108792865 C a score=78737.000000 s hg38.chr2_KI270769v1_alt 41065 12 + 120616 CGCTGGGTGTGG s panTro5.chr2A 108008514 12 - 111504155 CGCTGGGTGTGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363608 12 + 114371477 CGCTGGGTGTGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239882 12 + 637652 CGCTGGGTGTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035329 12 + 81552678 CGCTGGGTGTGG i nomLeu3.chr19 I 747 C 0 s rheMac8.chr13 3297934 12 + 108979918 CGCTGGGTGTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010695 12 - 111193037 CGCTGGGTGTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404570 12 + 3644372 CGCTGGGTGTGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359822 12 - 10304083 CGCTGGGTGTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442518 12 - 107702431 CGCTGGGTGAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991355 12 + 1565135 CGCTGGGTGTGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347921 12 - 13651311 CCCTGGGTGTGG i colAng1.NW_012118821v1 C 0 C 0 s aotNan1.NW_018507213v1 1916336 12 - 1938448 CGCTGGGCATGG i aotNan1.NW_018507213v1 C 0 I 1 s dasNov3.JH580157 554401 2 + 2232271 ----------GA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e canFam3.chr17 2028027 0 + 64289059 C e saiBol1.JH378218 3095363 0 - 7082604 C e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e otoGar3.GL873658 2524374 663 + 5252280 I e cebCap1.NW_016107454v1 581528 0 + 5243153 C e calJac3.chr14 3442196 0 - 108792865 C a score=28033.000000 s hg38.chr2_KI270769v1_alt 41077 3 + 120616 AGG s panTro5.chr2A 108008526 3 - 111504155 AGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363620 3 + 114371477 AGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239894 3 + 637652 AAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035341 3 + 81552678 AGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3297946 3 + 108979918 AGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010707 3 - 111193037 AGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404582 3 + 3644372 AGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359834 3 - 10304083 AGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442530 3 - 107702431 AGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991367 3 + 1565135 AGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347933 3 - 13651311 AGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442196 3 - 108792865 AGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095363 3 - 7082604 AGG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1916349 3 - 1938448 AGG i aotNan1.NW_018507213v1 I 1 C 0 s dasNov3.JH580157 554403 3 + 2232271 AAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e canFam3.chr17 2028027 0 + 64289059 C e proCoq1.NW_012151163v1 946455 1318 + 1238772 I e otoGar3.GL873658 2524374 663 + 5252280 I e cebCap1.NW_016107454v1 581528 0 + 5243153 C a score=92174.000000 s hg38.chr2_KI270769v1_alt 41080 7 + 120616 AGCTCTG s panTro5.chr2A 108008529 7 - 111504155 AGCTCTG i panTro5.chr2A C 0 n 0 s panPan2.chr2A 3363623 7 + 114371477 AGCTCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239897 7 + 637652 AGCTCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035344 7 + 81552678 AGCTCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3297949 7 + 108979918 AGCTCTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010710 7 - 111193037 AGCTCTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404585 7 + 3644372 AGCTCTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359837 7 - 10304083 AGCTCTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442533 7 - 107702431 AGCTCTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991370 7 + 1565135 AGCTCTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347936 7 - 13651311 AGCTCTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442199 7 - 108792865 AGCTCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095366 7 - 7082604 AGCTCTG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1916352 7 - 1938448 AGCTCTG i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 947773 7 + 1238772 AGCCCTG i proCoq1.NW_012151163v1 I 1318 C 0 s canFam3.chr17 2028027 5 + 64289059 --CTCTG i canFam3.chr17 C 0 I 3 s dasNov3.JH580157 554406 7 + 2232271 AGCTTTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e otoGar3.GL873658 2524374 663 + 5252280 I e cebCap1.NW_016107454v1 581528 0 + 5243153 C a score=105078.000000 s hg38.chr2_KI270769v1_alt 41087 11 + 120616 GGAGATGCGGT s panPan2.chr2A 3363630 11 + 114371477 GGAGATGCGGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239904 11 + 637652 GGAGATGCGGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035351 11 + 81552678 GGAGATGCCGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3297956 11 + 108979918 GGAGATGCAGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010717 11 - 111193037 GGAGATGCAGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404592 11 + 3644372 GGAGATGCAGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359844 11 - 10304083 GGAGATGCAGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442540 11 - 107702431 GGAGATGCAGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991377 11 + 1565135 GGAGATGCAGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347943 11 - 13651311 GGAGATGCGGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442206 11 - 108792865 GGAGACGCAGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095373 11 - 7082604 AGAGACGCAGT i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1916359 11 - 1938448 GGAGACGCAGT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 947780 11 + 1238772 GGAGATGCACT i proCoq1.NW_012151163v1 C 0 C 0 s canFam3.chr17 2028035 11 + 64289059 GGCCATGCGGA i canFam3.chr17 I 3 C 0 s dasNov3.JH580157 554413 11 + 2232271 TGAGGTGTAGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e otoGar3.GL873658 2524374 663 + 5252280 I e cebCap1.NW_016107454v1 581528 0 + 5243153 C e panTro5.chr2A 108008536 0 - 111504155 I a score=595695.000000 s hg38.chr2_KI270769v1_alt 41098 70 + 120616 GTTGGGAAGAGAGTCTA--CACAGTTGC----TGACTTGCAGCTCTTCACCTGGAGCTTCCAAGAGCTCTGAGGCA s panPan2.chr2A 3363641 70 + 114371477 GTTGGGAGGAGAGTCTA--CACAGTTGC----TGACTTGCAGCTCTTCACCTGGAGCTTCCAAGAGCTCTGAGGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239915 70 + 637652 GTTGGGAAGAGAGTCTA--CACAGTTGC----TGACTTGCAGCTCTTCACCTGGAGCTTCCAAGAGCTGTGAGGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035362 70 + 81552678 GTTGGGAAGAGAGTCTA--CACAGCTGC----TGACTTGCAGCTCTTCACCTGGAGCTTCCAAGAGCTCTGAGGCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3297967 69 + 108979918 ATTGGGAAGAGAGTCTA--CACAGCTGC----TGACTTGCCGCTCTTCACGTGGAGCTTCCAAGAGCTCCGA-TCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010728 69 - 111193037 ATTGGGAAGAGAGTCTA--CACAGCTGC----TGACTTGCCGCTCTTCACGTGGAGCTTCCAAGAGCTCCGA-TCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404603 69 + 3644372 ATTGGGAAGAGAGTCTA--CACAGCTGC----TGACTTGCCACTCTTCACGTGGAGCTTCCAAGAGCTCCGA-TTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359855 70 - 10304083 ATTCGGAAGAGAGTCTA--CACAGCTGC----TGACTTGCCGCTCTTCACGTGGAGCTTCCAAGAGCTCCGAGGCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442551 70 - 107702431 ATTGGGAAGAGAGTCTA--CACAGCTGC----TGACTTGCCGCTCTTCACGTGGAGCTTCCAAGAGCTCCGAGGCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991388 70 + 1565135 ATTGGGAAGAGAGTCTA--CACAACTGC----TGACTTGCCGCTCTTCAAGTGGAGCTTCCAAGAGCTCCGAGGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3347954 70 - 13651311 ATTGGGAAGAGAGTCTA--CACAGCCGC----TGATATGCTGCTCTTCACCTGGAGCTTCCAAGAGCTCTGAGGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442217 70 - 108792865 GTTGGGAAGAGAGTCTG--CACTGCTGC----TGACAGGCAGCTCTTCACCTGGAGCTTCCAAGAGCTCTGAGGCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095384 71 - 7082604 GTTGGGAAGAGAGTCTGT-CACCGCTGC----TGACAGGCAGCTCTTCACCTGGAGCTTCCAAGAGCTCCGAGGCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581528 70 + 5243153 GTTGGGAAGAGAGTCTA--CACCCTTGC----TGACAGGTAGCTTTTCACCTGGAGCTTCCAAGAGCTCTGGGGCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916370 75 - 1938448 GTTGGGAAGAGAGTCTAC-CCTCTCTGCCAGGTGACAGGCAGCTCTTCACCTGGAGCTTCCAAGAGCTCTGAGGCA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 947791 69 + 1238772 GTTGGAGGAAGAGTCTA--CGCAGTAGC----TGACGTGCATCTCTTTACCTGGAGCCT-CAGGAGCTCTGAGGCA i proCoq1.NW_012151163v1 C 0 I 154 s canFam3.chr17 2028046 34 + 64289059 -----------------------------------------GCGCCCCAGGTTCTGTGT-CAAGGGCACTGGCACA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 554424 70 + 2232271 ACTGGAAAGAGAGTCCATGTGTAGTAAT----TCACATGCATCTCTTCACCTGGAACTTTGGCGAGCTGAGAAA-- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e otoGar3.GL873658 2524374 663 + 5252280 I e panTro5.chr2A 108008536 0 - 111504155 I a score=593327.000000 s hg38.chr2_KI270769v1_alt 41168 75 + 120616 GGCCCGCAGAGCCCCTCGTGCACACTTGTCA----------AAGATGC--TCTCTCTCCTGGCATACCCTTGAGGCCCTAGGCCACC s panPan2.chr2A 3363711 75 + 114371477 GGCCTGCAGAGCCCCTCGTGCACACCTGTCA----------AAGATGC--TCTCTCTCCTGGCATACCCTTGAGGCCCTAGGCCACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 239985 75 + 637652 GCCCCACAGAGCCCCTCGTGCACACCTGTCA----------AAGATGC--TCTCTCTCCTGGCGTACCCTTGAGGCCCTAAGCCACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035432 75 + 81552678 GCCCCGCAGAGCCCCTCGTGCACACCTGTCA----------AAGATGC--TCTCCCTCCTGGCATACCCTTGAGGCCCTAGGCCACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298036 75 + 108979918 GCCCCGCGGAGTCCCTTGTGCACACCTGTCA----------AAGATGC--TCTCTCTCCTGGCATAGCCTTGAGGCCCTAGGCCACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010797 75 - 111193037 GCCCCGCGGAGTCCCTTGTGCACACCTGTCA----------AAGATGC--TCTCTCTCCTGGCATAGCCTTGAGGCCCTAGGCCACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404672 75 + 3644372 GCCCCGCGGAGTCCCTTGTGCACACCTGTCA----------AAGATGC--TCTCTCTCCTGGCATAGCCTTGAGGCCCTAGGCCACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3359925 75 - 10304083 GCCCTGCGGAGTCCCTTGTGCACACCTGTCA----------AAGATGC--TCTCTCTCCTGGCATAGCCTTTAGGCTCTAGGCCACC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442621 75 - 107702431 GCCCTGCAGAGTCCCTTGTGCACACCTGTCA----------AAGATGC--TCTCTCTCCTGGCATAGCCTTGAGGCCCTAGGCCACC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991458 75 + 1565135 GCCCCACGGAGTCCCTTGTGCACACCTGTCA----------AAGATGC--TCTCTCTCCTGGCATAGCCTTGAGGCCCTAGGCCACC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348024 75 - 13651311 GCCCCACAGAGTCCCTTGTGCACATCTGTCA----------AAGATGC--TCTCTCTCCTGGCATGGCCTTGAGGCCCTAGGCCACC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442287 74 - 108792865 GCCCCGCAGAGCCCCT-ATGCACACCTGTTG----------AAGATGC--TCTCTCTCCTGGCCGAGTCTTGAGGCCCTACACCACC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095455 74 - 7082604 GCCCCACAGAGCCCCT-GTGCATACCTGTTG----------AAGATGC--TGTGTCCCCTGGCAGAGTCTTGAGGCCCTATACCACC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581598 65 + 5243153 GCCCCTCAGAGCCCCT-ATGCACACCTGTTG----------AAGATGC--TGTCTCTCCTGGC--AGTCTTGAGGCCCTA------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916445 74 - 1938448 GCCCCGCAGAGCCCCT-ATGCACACCTGTTG----------AAGATGC--TGTCTCTCCTGGCAGAGCCTTGAGGCCCTACAGCACC i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2028080 47 + 64289059 ----------GACCATTCCTCCCATGTGCCT----------CA--------------------ATGTACCTGGGCCCCTGGCTTCCC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 554494 87 + 2232271 GTCTTGCAGAATTCCCCGTGTTTACATGTTATTGGTGCAGTAAGATGCCATTTCCCTCTTTGGGCAGCCTTGAATTCTTAATCCACC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 947860 154 + 1238772 I e otoGar3.GL873658 2524374 663 + 5252280 I e panTro5.chr2A 108008536 0 - 111504155 I a score=281292.000000 s hg38.chr2_KI270769v1_alt 41243 34 + 120616 TGCT---GCCCTCGCCGTCTTCCATCGAGTACA--GTGG s panTro5.chr2A 3499433 34 + 111504155 TGCT---GCTCTAGCCGTCTTCCATCGAGTACA--GTGG i panTro5.chr2A I 6151 I 1660 s panPan2.chr2A 3363786 34 + 114371477 TGCT---GCCCTCGCCGTCTTCCATCGAGTACA--GTGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240060 34 + 637652 TGCT---GCCCTCGCCGTCTTCCATCGAGTACA--GTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035507 33 + 81552678 TGCT---GC-CTCGCCGTCTTCCATCAAGTGTA--GTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298111 34 + 108979918 TGCT---GCCCTCGCCGTCTTCCATCGAGTGCA--GTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010872 34 - 111193037 TGCT---GCCCTCGCCGTCTTCCATCGAGTGCA--GTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404747 34 + 3644372 TGCT---GCCCTCGCCGTCTTCCATCGAGTGTA--GTGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360000 34 - 10304083 TGCT---GCCCTCGCCGTCTTCCATCGAGTGCA--GTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442696 34 - 107702431 TGCT---GCCCTCGCCGTCTTCCATCGAGTGCA--GTGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991533 34 + 1565135 TGCT---GCCCTCGCCATCTTCCATCGAGTGCA--GTGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348099 37 - 13651311 TGCTGCCGCCCTCACCATCTTCCATCGAGTGCA--GTGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442361 33 - 108792865 TGCT---GCCCT-GCCGTCTTCAGTCAAGTGCG--CTGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095529 33 - 7082604 TGCT---GCCCT-GCTGTATTCAGTCGAGTGCA--CTGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581663 23 + 5243153 --------------CCGTCTTCAATCGAGTGCG--CTGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916519 33 - 1938448 TGCT---GCCCT-GCCGTCTTCAGTCGAGTGCG--CTGG i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2028127 35 + 64289059 TGCC---ACCTTAGCCTTCTGTAA-CGGGTGCAAGACGG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 554581 34 + 2232271 TGTT---GCTTTAGCTCTCTTTAATGGGAACTA--AATG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 947860 154 + 1238772 I e otoGar3.GL873658 2524374 663 + 5252280 I a score=185582.000000 s hg38.chr2_KI270769v1_alt 41277 31 + 120616 -------GATGCACTTAACGTGAG-TGCTCCCGG-GATCT s panPan2.chr2A 3363820 31 + 114371477 -------GATGCACTTAACGTGAG-TGCTCCCGG-GATCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240094 31 + 637652 -------GATGCACTTAACGTGAG-TGCTCCCAG-GATCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035540 31 + 81552678 -------GATGCACTTAATGTGAG-TGCTCCCAG-GATCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298145 30 + 108979918 -------GATGCACTTAACGTGAG-TTCT-CCGG-GATCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010906 30 - 111193037 -------GATGCACTTAACGTGAG-TTCT-CCGG-GATCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404781 30 + 3644372 -------GATGCACTTAACGTGAG-TTCT-CCGG-GATCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360034 30 - 10304083 -------GATGCACTTAACGTGAG-TGCT-CCAG-GATCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442730 30 - 107702431 -------GATGCACTTAACTTGAG-TGCT-CCGG-GATCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991567 30 + 1565135 -------GATGCACTTAACGTGAG-TTCT-CCGG-GATCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348136 31 - 13651311 -------GATGCACTTAACGTGAG-TGCT-CCGGAGATCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442394 30 - 108792865 -------GCTGCACTCAACGGGA--TGCTCCCAG-GATCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095562 30 - 7082604 -------GCTGCACTGAACGGGA--TGCTCCCGG-GATCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581686 30 + 5243153 -------GCTGCACTGAACGGGA--TGCTCCCAG-GATCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916552 30 - 1938448 -------GCTGCACTCAACGGGA--TGCTCCCGG-GATCT i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2028162 16 + 64289059 -------GATGCA--------GAGTTGCT----G-G---- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 554615 37 + 2232271 AATACACAATCTATTTAATGTGTA-TTCT-CTGG-GATCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 947860 154 + 1238772 I e otoGar3.GL873658 2524374 663 + 5252280 I e panTro5.chr2A 3499467 1660 + 111504155 I a score=31704.000000 s hg38.chr2_KI270769v1_alt 41308 4 + 120616 CATC s panTro5.chr2A 3501127 4 + 111504155 CATC i panTro5.chr2A I 1660 C 0 s panPan2.chr2A 3363851 4 + 114371477 CATC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240125 4 + 637652 CATC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035571 4 + 81552678 CCTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298175 4 + 108979918 CCTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010936 4 - 111193037 CCTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404811 4 + 3644372 CCTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360064 4 - 10304083 CCTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442760 4 - 107702431 CCTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991597 4 + 1565135 CCTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348167 4 - 13651311 CCTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442424 4 - 108792865 TCTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095592 4 - 7082604 TCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581716 4 + 5243153 TCTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916582 4 - 1938448 TCTC i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 554652 4 + 2232271 CCAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e canFam3.chr17 2028178 0 + 64289059 C e proCoq1.NW_012151163v1 947860 154 + 1238772 I e otoGar3.GL873658 2524374 663 + 5252280 I a score=23862.000000 s hg38.chr2_KI270769v1_alt 41312 6 + 120616 ----CCACAG s panTro5.chr2A 3501131 6 + 111504155 ----CCACAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363855 6 + 114371477 ----CCACAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240129 6 + 637652 ----CCACAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035575 6 + 81552678 ----CCACAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298179 4 + 108979918 ----CCAC-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010940 4 - 111193037 ----CCAC-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404815 4 + 3644372 ----CCAC-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360068 4 - 10304083 ----CCAC-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442764 4 - 107702431 ----CCAC-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991601 4 + 1565135 ----CCAC-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348171 6 - 13651311 ----CCACAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442428 4 - 108792865 ----CCAC-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095596 4 - 7082604 ----CCAC-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581720 4 + 5243153 ----CCAC-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916586 4 - 1938448 ----CCAC-- i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 948014 6 + 1238772 ----CCACAG i proCoq1.NW_012151163v1 I 154 C 0 s canFam3.chr17 2028178 4 + 64289059 ----CCAC-- i canFam3.chr17 C 0 I 2 s dasNov3.JH580157 554656 8 + 2232271 TCATACAT-- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2634940 367 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e otoGar3.GL873658 2524374 663 + 5252280 I a score=363494.000000 s hg38.chr2_KI270769v1_alt 41318 23 + 120616 AGTCTTTGGCCCTGTAGACAGAC s panTro5.chr2A 3501137 23 + 111504155 AGTCTGTGGCCCTGTAGACAGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363861 23 + 114371477 AGTCTGTGGCCCTGTAGACAGAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240135 23 + 637652 AGTCTTTGGCCCTGTAGACAGAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035581 23 + 81552678 AGTCTTTGGCCCTGTAGACAGAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298183 23 + 108979918 AGTCTTTGGCCCTGTAGACAGAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010944 23 - 111193037 AGTCTTTGGCCCTGTAGACAGAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404819 23 + 3644372 AGTCTTTGGCCCTGTAGACAGAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360072 23 - 10304083 AGTCTTTGGCCCTGTAGACAGAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442768 23 - 107702431 AGTCTTTGGCCCCGTAGACAGAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991605 23 + 1565135 AGTCTTTGACCCTATAGACAGAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348177 23 - 13651311 AGTCTTTGGCCCTGTAGACAGAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442432 23 - 108792865 AGTCTTTGGACCTGTAGACAGAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095600 23 - 7082604 AGTCTTTGGCCCTGTAGACAGAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581724 23 + 5243153 AGTCTTTGGCCCTGTGGACAGAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916590 23 - 1938448 AGTCTTTGGCCCTATAGACAGAC i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2635307 23 - 159902609 AGTCTTTGGCCCTGTAGACAGAC i micMur3.chr8 I 367 I 120 s proCoq1.NW_012151163v1 948020 23 + 1238772 AATCTTTGGCCGTGTAGACAGAC i proCoq1.NW_012151163v1 C 0 C 0 s canFam3.chr17 2028184 23 + 64289059 GATCTTTCACCCTGTAGACAGAC i canFam3.chr17 I 2 I 8 s dasNov3.JH580157 554664 23 + 2232271 AATCCTTGACCCTGTAAACAGGT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91410831 3057 - 120129022 I e otoGar3.GL873658 2524374 663 + 5252280 I a score=-22721.000000 s hg38.chr2_KI270769v1_alt 41341 14 + 120616 ---AGTCTCTGTAATCT s panTro5.chr2A 3501160 14 + 111504155 ---AGTCTCTGTAATCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363884 14 + 114371477 ---AGTCTCTGTAATCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240158 14 + 637652 ---AGTCTCTGTAATCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035604 6 + 81552678 ---AGTGTC-------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298206 6 + 108979918 ---ATCCTC-------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010967 6 - 111193037 ---ATCCTC-------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404842 6 + 3644372 ---ATCCTC-------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360095 6 - 10304083 ---ATCCTC-------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442791 6 - 107702431 ---ATCCTC-------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991628 6 + 1565135 ---ATCCTC-------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348200 6 - 13651311 ---ATCCTC-------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442455 2 - 108792865 -------TC-------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095623 4 - 7082604 ---AG--AC-------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581747 6 + 5243153 ---AGACTC-------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916613 6 - 1938448 ---AGACTC-------- i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 948043 14 + 1238772 ---AGCCCCAGTAATCT i proCoq1.NW_012151163v1 C 0 I 120 s canFam3.chr17 2028215 6 + 64289059 ---AACTCC-------- i canFam3.chr17 I 8 C 0 s dasNov3.JH580157 554687 7 + 2232271 GGCACCC---------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2635330 120 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e otoGar3.GL873658 2524374 663 + 5252280 I a score=1015087.000000 s hg38.chr2_KI270769v1_alt 41355 132 + 120616 TGTAATCTCCCCACAGCACA-GCCGTCTGCCTTCACTGGCACCTCAGCATCTGCAGGGAGCATCCCGGTCCCAGGAAAC-----ATCATCCAGCCCAGAGGGCGGCAG-----------------GGTCGCCGTCGCCATGGATGCCAGCCTTTA s panTro5.chr2A 3501174 126 + 111504155 TGTAATCTCCCCACAGCACA-GCCGTCCGCCTTCACTGGCACCTCAGCATCTGCAGGGAGCATCCCGGTCCCAGGAAAC-----ATCATCCAGCCCAGAGGGCGGCAG-----------------GGTCGCC------ATAGATGCCAGCCTTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3363898 126 + 114371477 TGTAATCTCCCCACAGCACA-GCCGTCCGCCTTCACTGGCACCTCAGCATCTGCAGGGAGCATCCCGGTCCCAGGAAAC-----ATCATCCAGCCCAGAGGGCGGCAG-----------------GGTCGCC------ATAGATGCCAGCCTTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240172 126 + 637652 TGTAATCTCCCCACAGCACA-GCCGTCCGCCTTCACTGGCACCTCAGCATCTGCAGGGAGCATCCCGGTCCCAGGAAAC-----GTCATCCAGCCCAGAGGGCGGCAG-----------------GGTCGCC------ATGGATGCCAGCCTTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035610 126 + 81552678 TGTAATCTCCCCACAGCACG-GCCATCCGCCTTCACTGGCACCCCAGCATGTGCAGGGAGCATCCCAGTCCCAGGAAAC-----CTCATCCAGCCCAGAGGGCGGCAA-----------------GGTCGCC------ATGGATGCCAGCCTTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298212 124 + 108979918 TGTAATCTCCCCACAGCATG-GCCATCTGCTGTCACTGGCACCTCAGCATCTGCAGGGAGCATCTCTGTCCCAGGAAAT--CTCCTCATCCACCCCAGAGGGT----------------------GGTCACC------ATGGACACCAGCCTTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5010973 124 - 111193037 TGTAATCTCCCCACAGCATG-GCCATCTGCTGTCACTGGCACCTCAGCATCTGCAGGGAGCATCTCTGTCCCAGGAAAT--CTCCTCATCCACCCCAGAGGGT----------------------GGTCACC------ATGGACACCAGCCTTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404848 121 + 3644372 TGTAATCTCCCCACAGCACG-GCCATCTGCTGTCACTGGCACCTCAGCATCTGCAGGGAGCATCTCTGTCCCAGGAAAT-----CTCATCCACCCCAGAGGGT----------------------GGTCACC------ATGGACACCAGCCTTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360101 121 - 10304083 TGTAATCTCCCCACAGCACG-GCCGTCTGCCGTCACTGGCACCTCAGCATCTGCAGGGTGCATCCCTGTCCCAGGAAAT-----CTCATTCACCCCAGAGGGT----------------------GGTCGCT------GTGGACACCAGCCTTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442797 121 - 107702431 TGTAATCTCCCCACAGCACG-GCCATCTGCCGTCACTGGCACCTCAGCATCTGCAGGGCGCATCCCTGTCCCAGGAAAT-----CTCATCCACCCCAGAGGGT----------------------GGTCGCT------ATGGACACCAGCCTTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991634 124 + 1565135 TGTAATCTCCCCACAGCACG-GCCATCTGCCGTCACTGGCACCTCAGCATCTGCAGGGAGCATCCCTGTCCCAGGAAAT--CTCCTCATCCACCCCAGAGGGT----------------------GGTCGCC------ATGGACACCAGCCTTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348206 124 - 13651311 TGTCATCTCCCCACAGCATG-GCCATCTGCCTTCACTGGCACCTCAGCATCTGCAGGGAGCATCCCTGTCCCAGGAAAT--CTCCTCATCCACCCCAGAGGGT----------------------AGTCGTC------ACGGACACCAGCCTTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442457 128 - 108792865 TGTGATCTCCCCACAGCTCA-GCCATCTGCTTTCACTGGTACCTCAGCATCCACAGGGAGCATATTC-TCCCAGGATAC--CTCCTCCTCCACCCCAGAGGACAGCAA-----------------GGTCGCC------ATGGATGCCTGCCTCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095627 128 - 7082604 TCTGATCTCCCCACAGCTCA-GCCGTCCACTTTCACTGGTACCTCAGCATCCGCAGGGAGCAAACCC-TCCCAGGAAAC--CTCCTCCCCAACCCCAGAGGGTGGCAA-----------------GGTCGCC------ACGGATGCCCACCTTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581753 116 + 5243153 TGTGATCTCCCCACAGCTCA-GCCGTCCACTTTCACTGGTACCTCAGCATCCGCAGGGAGCATACCC-TCCCAGGAAAC--CTCCTCCTCCA---CAGAGGG--------------------------CGCC------ATGGATGCCCACCTTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916619 128 - 1938448 TGTGATCTCCGCACAGCTCA-GCCGTCCGCTTTCACTGGTACCTCAGCATCCGCAGGGAGCATACCC-TCCCAGGACAC--TTCCTCCTCCACCCCAGAGGGCGGCAA-----------------GGTCGCC------ATGGATGCCCACCTTTT i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2028221 69 + 64289059 --TGCACACCCCAGGG---A-GCAGTCAGCCCCCTTTGG---------------------------------AGGAAAT---------------------GACAACGG-----------------GGTTGTT---------GGCACCAGCCTTTT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 554694 140 + 2232271 TATAATCTCTCTACACCTAGCACCCTACACTTCCATTGCTGCCCCAATATCTCCAG---------CCTTCCTAGAGCCCTACTGCCATCCCACCCGAGAAGATAGTGGCAAGAAAGAGTGTCCTTGGCTGTC------ATGGTAGCCAGCCTTTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2635330 120 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 948057 120 + 1238772 I e otoGar3.GL873658 2524374 663 + 5252280 I a score=1871680.000000 s hg38.chr2_KI270769v1_alt 41487 148 + 120616 CCCAGCACTAAA-AGTAT------TTTTGTTTTTGTTT------GTCTTAAATGTTGATAACTTCATAATAACTATTTA-CGTTAGGGCTTTAAAATACCTTTCCAAA-ATCCTACAAA----GTTTCTCTTTTGAGAGCCATTCTTCAGATCCCTGTACT------------AGCCTT s panTro5.chr2A 3501300 154 + 111504155 CCCAGCACTAAA-AGTAT------TTTTGTTTTTGTTTTTGTTTGTCTTAAATGTTGATAACTTCATAATTACTATTTA-CGTTAGGGCTTTAAAATACCTTTCCAAA-ATCCTACAAA----GTTTCTCTTTTGAGAGCCATTCTTCAGATCCCTGTACT------------AGCCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364024 154 + 114371477 CCCAGCACTAAA-AGTAT------TTTTGTTTTTGTTTTTGTTTGTCTTAAATGTTGATAACTTCATAATTACTATTTA-CGTTAGGGCTTTAAAATACCTTTCCAAA-ATCCTACAAA----GTTTCTCTTTTGAGAGCCATTCTTCAGATCCCTGTACT------------AGCCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240298 148 + 637652 CCCAGCACTAAA-AGTAT------TTTTGTTTTTGTTT------GTCTTAAATGTTGATAACTTTATAATTACTATTTA-CGTTAGGGCTTTAAAATACCTTTCCAAA-ATCCTACGAA----GTTTCTCTTTTGAGAGCCATTCTTCAGATCCCTGTACT------------AGCCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035736 148 + 81552678 CCCAGCACTAAA-AGTAT------TTTTGTTTTTGTTT------GTCTTAAATGTTGATAACTTCATAATTACTATTCA-CGTTAGGGCTTTAAAATACCTTTCCAAA-ATCCTATAAA----GTTTCTCTTTTGGGAGCCATTCTTCAGATCCCGGTACT------------AGCCTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298336 142 + 108979918 CCCAGCACCAAA-AG------------TGTTTTTGTTT------GTCTTAAATGTTGTTAACTTCATAATTACTCTTCA-CGTTAGGGCTTTAAAATACCTTTCCAAA-ATCCTACAGA----GTTTCTCTTTTGAGAGCCATTCTTCATATCCCCATACT------------AGCCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5011097 142 - 111193037 CCCAGCACCAAA-AG------------TGTTTTTGTTT------GTCTTAAATGTTGTTAACTTCATAATTACTCTTCA-CGTTAGGGCTTTAAAATACCTTTCCAAA-ATCCTACAGA----GTTTCTCTTTTGAGAGCCATTCTTCATATCCCCATACT------------AGCCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3404969 142 + 3644372 CCCAGCACCAAA-AG------------TGTTTTTGTTT------GTCTTAAATGTTGTTAACTTCATAATTACTCTTCA-CGTTAGGGCTTTAAAATACCTTTCCAAA-ATCCTACAGA----GTTTCTCTTTTGAGAGCCATTCTTCATATCCCCGTACT------------AGCCTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360222 142 - 10304083 CCCGGCACCAAA-AG------------TGTTTTTGTTT------GTCTTAAATGTTGTTAACTTCATAATTACTATTCA-CATTAGGGCTTTAAAATACCTTTCCAAA-ATCCTACAGA----GTTTCTCTTTTGAGAGCCATTCTTCATATCCCCGTACT------------AGCCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3442918 142 - 107702431 CCCAGCACCAAA-AG------------TGTTTTTGTTT------GTCTTAAATGTTGTTAACTTCATAATTACTATTCA-CATTCGGGCTTTAAAATACCTTTCCAAA-ATCCTACGGA----GTTTCTCTTTTGAGAGCCATTCTTCATATCCCTGTACT------------AGCCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991758 142 + 1565135 CCCGGCACCAAA-AG------------TGTTTTTGTTT------GTCTTAAATGTTGTTAACTTCATAATTACTATTCA-CATTAGGGCTTTAAAATTCCTTTTCAAA-ATCCTACAGA----GTTTCTCTTTTGAGAGCCATTCTTCATATCCCCGTACT------------AGCCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348330 148 - 13651311 CCCGGCACCAAA-AGCAT------TTTTGTTTTTGTTC------GTCTTAAATGTTGTTAACTTCATAATTACTATTCA-CGTTAGGGCTTTAAAATACCTTTCCAAA-ATCCTACAGA----GTTTCTCTTTTGAGAGCCATTCTTCATATCCCCGTACT------------AGCCtt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442585 135 - 108792865 CCCAGCACCAAA-AGTAT-----------------TTT------GTCTTAAATGTTAATAACTTCATAATTACTATTCA-CATTAGGGCTTTAAAATACCTTCCCAAA-ATCCTAC--A----CTTTCTCTTTCAAGAGTCATTCTTCATATGCCTGTACT------------AGCCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095755 152 - 7082604 CCCAGCACCAAA-AGTAtttttgtttttgtttttgttt------GTCTTAAATGTTAATAACTTCATAATTACTATTCA-CATTAGGGCTTTAAAATACCTTTCCAAA-AGCCTAC--A----GTTTCTCTCTTGAGAGCCATTCTTCATATGCCTGTACT------------AGCCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 581869 146 + 5243153 CCCAGCACCAAA-AGTAT------TTTTGGTTTTGTTT------GTCTTAAATGTTAATAACTTCATAATTACTATTCA-CATTAGGGCTTTAAAATACCTTTCCAAA-ATCCTAC--A----GTTTCTCTTTTGAGAGCCATTCTTCATATGCCTGTACT------------AGCCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916747 158 - 1938448 CCCAGCACCAAA-AGTAT------TTTTGTTTTTGTTT------GTCTTAAATGTTAATAACTTCATAATTACTGTTCA-CATTAGGGCTTTAAAATACCTTTCCAAA-ATCCTAC--A----GTTGCTCTTTTGAGAGCCATTCTTCGTATGTCTGTACTTTAATTTAAGAAAGCCtt i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2635450 152 - 159902609 CCCAGCACCAGA-AGTGT------TTCTGTTTTTGTCT--GCTCGTCTTAAATGTTGACAACTTCAGAATTACTTTTCA-TGTTAGTGTTTTAAAATACCTTTCCAAA-ATCCTGCATG----GTTTCTTTTCTGAGAACCATTCTTCATAGGCCTGTAAT------------AGCCTT i micMur3.chr8 I 120 C 0 s proCoq1.NW_012151163v1 948177 152 + 1238772 CCCAGCACCAAA-AGTAT------TCTTGTTTTTGTCT--GTTTGTCTGAAATGTTGACAACTTCAGAATTACTTTTCA-TGTTAGTGCTTTAAAATACCTTTCCAAA-GTCCCACACG----GTTTCTTTTTTGAGAACCATTCTTCATATGCCTGTAAT------------AGCCTT i proCoq1.NW_012151163v1 I 120 I 70 s canFam3.chr17 2028290 151 + 64289059 GCCAAAATTAAACAATGT------CTTTGTTTTTGTCC------ATCTTTAATGTTGATAGCTGTAGAATTACCGTTCAGTGTTAGGGCCTTAGCGTACCTTTCCAAACACTACACACT----GTTTTCCTCTTGAGAGTCATTCTTCGTATGCCTGTAAT------------CGCCTT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 554834 149 + 2232271 CTGAAAATTAAA-AG---------TTTTACGTTTGTTT------GTTTTTAATGTTGACTACTTCAAAATGACTATTAA-CATTAGGACTTTAAAGTACCTTTATAAA-ATCCTACATGTTTTTTTTCTCTTTAGAAGACGACTCTTCATATGCCTGCAGT------------AGCCTT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91410831 3057 - 120129022 I e otoGar3.GL873658 2524374 663 + 5252280 I a score=57051.000000 s hg38.chr2_KI270769v1_alt 41635 4 + 120616 CTTT s panTro5.chr2A 3501454 4 + 111504155 CTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364178 4 + 114371477 CTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240446 4 + 637652 CTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035884 4 + 81552678 CTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298478 4 + 108979918 CTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5011239 4 - 111193037 CTtt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3405111 4 + 3644372 CTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360364 4 - 10304083 CTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3443060 4 - 107702431 CTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991900 4 + 1565135 CTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348478 4 - 13651311 cttt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442720 4 - 108792865 CTTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095907 4 - 7082604 CTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582015 3 + 5243153 -TTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916905 4 - 1938448 cttt i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2635602 4 - 159902609 CTTT i micMur3.chr8 C 0 I 612 s canFam3.chr17 2028441 4 + 64289059 CTCT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 554983 4 + 2232271 CCTT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 948329 70 + 1238772 I e otoGar3.GL873658 2524374 663 + 5252280 I a score=390191.000000 s hg38.chr2_KI270769v1_alt 41639 53 + 120616 CTTT-------------AATTTTCTTTTAGA-T---TTTTTTT--TTTATTTTTTAAATTGTTACAC--TAGTG s panTro5.chr2A 3501458 52 + 111504155 CTTT-------------AATTTTCTTTTAGA-T---TTTTTTT--TT-ATTTTTTAAATTGTTACAC--TAGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364182 51 + 114371477 CTTT-------------AATTTTCTTTTAGA-T---TTTTTTT--T--ATTTTTTAAATTGTTACAC--TAGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240450 52 + 637652 CTTT-------------AATTTTCTTTTAGA-T---TTTTTTT--TT-ATTTTTTAAATTGTTACAC--TAGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035888 51 + 81552678 CTTT-------------AATTTTCTTTTAGA-T---TTTTTTT--T--AATTTTTAAATTGTTACAC--TAGTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298482 53 + 108979918 CTTT-------------AATTTTCTTTTAGATT---TTTTTTT--TT-ATTTTTTAAATTGTTACAC--TAGTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5011243 53 - 111193037 cttt-------------aattttcttttagatt---ttttttt--tt-attttttaaattgttaCAC--TAGTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3405115 52 + 3644372 CTTT-------------AATTTTCTTTTAGA-T---TTTTTTT--TT-ATTTTTTAAATTGTTACAC--TAGTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360368 51 - 10304083 CTTT-------------AATTTTCTTTTAGA-----TTTTTTT--TT-ATTTTTTAAATTGTTACAC--TAGTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3443064 52 - 107702431 CTTT-------------AATTTTCTTTTAGA-T---TTTTTTT--TT-ATTTTTTAAATTGTTACAC--TAGTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991904 65 + 1565135 CTTTTTAGATTTTTTAGAATTTTCTTTTAGA-T---TTTTTTT--TT-ATTTTTTAAATTGTTACAC--TAGTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348482 45 - 13651311 -----------------aattttcttttagt-------ttttt--tt-atttttttaattGTCACAC--TAGTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442724 53 - 108792865 Cttt-------------aa-tttttttaaat-t---aaattat--tt-attttttaaGTTGTTAGACTGTGGAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095911 54 - 7082604 CTCT-------------AACTTTCttttaat-t---aaattat--tt-attttttaaaCTGTTAGACTGTGAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582018 54 + 5243153 CTTT-------------GATTTTCTTTTAAT-T---AAATTAT--TT-ATTTTTTAAATTGTTAGGCTGTGGAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916909 54 - 1938448 cttt-------------aattttcttttaat-t---aaattat--tt-attttttaAGTTGTTAGTCTGTGGAA i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2028445 54 + 64289059 CCTT-------------AATTTGCTTTTAAT-T---AAATTATACTT-ATTTTGTAATTGTTAATTC--TAGAA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 554987 54 + 2232271 CTTT-------------AATTTGCTTTTAAC-TAAATTATTTT--TC-ATTTTGT-ACTTATTACAC--TAGAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2635606 612 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 948329 70 + 1238772 I e otoGar3.GL873658 2524374 663 + 5252280 I a score=484969.000000 s hg38.chr2_KI270769v1_alt 41692 38 + 120616 CAGATTGTTTCTCCCATTATAGGGTTTGCAGTCATGAA s panTro5.chr2A 3501510 38 + 111504155 CAGATTGTTTCTCCCATTATAGGGTTTGCAGTCATGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364233 38 + 114371477 CAGATTGTTTCTCCCATTATAGGGTTTGCAGTCATGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240502 38 + 637652 CAGATTGTTTCTCCCATTATAGGGTTTGCAGTCATGAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035939 38 + 81552678 CAGATCGTTTCCCCCATTATAGGGTTTGCAGTCATGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298535 38 + 108979918 CAGATTGTTTCTCCCGTCATAGGGTTTGCAGTCATGAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5011296 38 - 111193037 CAGGTTGTTTCTCCCGTCATAGGGTTTGCAGTCATGAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3405167 38 + 3644372 CAGATTGTTTCTCCCGTCATAGGGTTTGCAGTCATGAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360419 38 - 10304083 CAGATTGTTTCTCCCATTATAGGGTTTGCAGTCATGAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3443116 38 - 107702431 CAGATTGTTTCTCCCGTCATAGGGTTTGCAGTCATGAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 991969 38 + 1565135 CAGATTGTTTCTCCCGTCATAGGGTTTGCAGTCATGAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348527 38 - 13651311 CAGATTGTGTCTCCTGTTACAGGGTTTGCAGTCATGAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442777 38 - 108792865 CAGATTGTTTCTCCCGCTATAGGGTTTGTAGTCATGAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3095965 38 - 7082604 CAGATTATTTCTCCTGCTATAGGGTTTGTAGTCGTGAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582072 38 + 5243153 CAGATTATTTCTCCCGCTATAGGGTTTGTAGTCATGAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1916963 38 - 1938448 CAGATTGTTTCTCCCGCTATAGGGTTCGTAGCCATGAG i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 948399 38 + 1238772 CAGATTGTTTCTCCCACTATAGGGTTTGTATTCATGAG i proCoq1.NW_012151163v1 I 70 C 0 s canFam3.chr17 2028499 38 + 64289059 CAAATTGCTTTTCCCTCTGAAGGGTTTGTATTCAAGAG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 555041 38 + 2232271 GAGATTGTTACTCCCTTTCAAGGGTTTGTATTAATGAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2635606 612 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e otoGar3.GL873658 2524374 663 + 5252280 I a score=84356.000000 s hg38.chr2_KI270769v1_alt 41730 7 + 120616 AAGTGTT s panTro5.chr2A 3501548 7 + 111504155 AAGTGTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364271 7 + 114371477 AAGTGTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240540 7 + 637652 AAGTGTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035977 7 + 81552678 AAGTGTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298573 7 + 108979918 AAGTGTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5011334 7 - 111193037 AAGTGTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3405205 7 + 3644372 AAGTGTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360457 7 - 10304083 AAGTGTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3443154 7 - 107702431 AAGTGTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 992007 7 + 1565135 AAGTGTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348565 7 - 13651311 AAGTGTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442815 7 - 108792865 AAGCGCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096003 7 - 7082604 AAGCACT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582110 7 + 5243153 AAGCGCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917001 7 - 1938448 AAGCGCT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 948437 7 + 1238772 AGGtgtt i proCoq1.NW_012151163v1 C 0 I 2112 s otoGar3.GL873658 2525037 7 + 5252280 AAATGTT i otoGar3.GL873658 I 663 C 0 s canFam3.chr17 2028537 7 + 64289059 ACTTGTA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 555079 7 + 2232271 AGGCATT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2635606 612 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I a score=2346235.000000 s hg38.chr2_KI270769v1_alt 41737 241 + 120616 GATAGGGATTATATCCATGAA-AATATTTCTAGAACATTCATT-CAT-T-TTAtattaacagcttgcattggtgtggtacatttgtt-acaattgatgaaccagtattggtacagcattattaacaaatgtttatagtttacacttgggttcactct-tgtgttgtacatATTCACTATGTT----------AAAGAAAATTAAATGTCCATTCCTGACAAG----------------TTTAATTTCATCCT-CTC-TCAGGC---AGTTAAATTTTT- s panTro5.chr2A 3501555 229 + 111504155 GATAGGGATTATATCCATGAA-AATATTTCTAGAACATTCAtt-cat-t-ttatattaacagcttgcattggtgtggtacatttgtt-gcaattgatgaaccagtattggtacagcattattaacaaatgtttatagtttacacttgggttcactct-tgtgttgtacatATTCACCATGTT----------AAAGAAAATTAAATGTCCATTCCTGACAAG----------------TTTAATTTCATCCT-CTC-TCAGGC---------------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364278 229 + 114371477 GATAGGGATTATATCCATGAA-AATATTTCTAGAACATTCATT-CAT-T-TTAtattaacagcttgcattggtgtggtacatttgtt-gcaattgatgaaccagtattggtacagcattattaacaaatgtttatagtttacacttgggttcactct-tgtgttgtacatATTCACCATGTT----------AAAGAAAATTAAATGTCCGTTCCTGACAAG----------------TTTAATTTCATCCT-CTC-TCAGGC---------------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240547 241 + 637652 GATAGGGATTATATCCATGAA-AATATTTCTAGAACATTCAtt-cat-t-ttatattaacagcttgcattggtgtggtacatttgtt-acaattgatgaaccagtattggtacagcattattaacaaatgtttatagtttacacttgggttcactct-tgcgttgtacatATTCACTATGTT----------AAAGAAAATTAAATGTCCATTCCTGACAAG----------------TTTAATTTCATCCT-CTC-TCAGGC---AGTTAAATTTTT- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3035984 241 + 81552678 GATAGGGATTATATCCATGAA-AATATTTCTAGATCATTCATT-CAT-T-TTAtattaacagcttgcattggtgtggtacatttgtt-acagttgatgaaccagtattggtacagcattattaacaaatgttcatagtttacacttgggttcactct-tgtgttgtacatATTCACTATGTT----------AAAGAAAATTAAATGTCCATTTCTGACAAG----------------GTTAATTTCATCCT-CTC-TCAGAC---AGTTAAATTTTT- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298580 243 + 108979918 GGTAGGGATTATATCTCTGAATAATACTTCTAGATCATTCATTGCAT-T-TTAtattgacagcttgcattggtgtggtacatttgtt-acgactgatgaaccggtattggtacagcattattaacaaatgttcatagtttacacttgggttcactct-tgtgttgaacatATTCACTATGTT----------AAAGAAAATTAAATGTCCATTCCTGACAAG----------------GCTAATTTCATCCT-CTC-TCAGAG---AGTTAAATTTTT- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5011341 243 - 111193037 GGTAGGGATTATATCTCTGAATAATACTTCTAGATCATTCATTGCAT-T-TTAtattgacagcttgcattggtgtggtacatttgtt-acgactgatgaaccggtattggtacagcattattaacaaatgttcatagtttacacttgggttcactct-tgtgttgaacatATTCACTATGTT----------AAAGAAAATTAAATGTCCATTCCTGACAAG----------------GCTAATTTCATCCT-CTC-TCAGAG---AGTTAAATTTTT- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3405212 243 + 3644372 GGTAGGGATTATATCTCTGAATAATACTTCTAGATCATTCATTGCAT-T-TTAtattgacagcttgcattggtgtggtacatttgtt-acgactgatgaaccggtattggtacagcattattaacaaatgttcatagtttacacttgggttcactct-tgtgttgaacatATTCGCTATGTT----------AAAGAAAATTAAATGTCCATTCCTGACAAG----------------GCTAATTTCATCCT-CTC-TCAGAG---AGTTAAATTTTT- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360464 243 - 10304083 GCTAGGAATTATATCTCTGAATAATATTTCTAGATCATTCATTGCAT-T-TTAtattgacagcttgcattggtgtggtacatttgtt-acgactgatgaaccggtattggtacagcattattaacaaatgttcgtagtttacacttgggttcactct-tgtgttgtacatATTCACTATGCT----------AAAGAAAATTAAATGTCCATTCCTGACAAG----------------GTTAATTTCATCCT-CTC-TCAGAG---AATTAAATTTTT- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3443161 243 - 107702431 GGTAGGGATTATATCTCTGAATAATATTTCTAGATCATTCATTGCAT-T-TTAtattgacagcttgcattggtgtggtacatttgtt-acgactgatgaaccggtgttggtacagcattattaacaaatgttcatagtttacacttgggttcactct-tgtgttgtacatATTCACTATGTT----------AAAGAAAATTAAATGTCCATTCCTGACAAG----------------GTTAATTTCATCCT-CTC-TCAGAG---AGTTAAATTTTT- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 992014 243 + 1565135 GGTAGGGATTATATCTCTGAATAATACTTCTAGATCATTCATTGCAT-T-TTAtattgacagcttgcattggtgtggtacatttgtt-acgactgatgaaccagtattggtacagcattattaacaaatgttcttagtttacacttgggttcactct-tgtgttgtacatATTCACTATGCT----------AAAGAAAATTAAATGTCCATTCCTGACAAG----------------GCTAATTTCATCCT-CTC-TCAGAG---AGTTAAATTTTT- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348572 243 - 13651311 GGTAGGGATTATATCTGTGAATAATATTTCTAGATCATTCATTGCAT-T-TTGtattaacagcttgcattggtgtggtacatttgtt-acgattgatgaaccggtattggtacagcattattaacaaatgttcatagtttacacttgggttcactct-tgtgttgtacatATTCACTATGTT----------AAAGAAAATTAAATGTCCATTCCTGACAAG----------------GTTAATTTCATCCT-CTC-TCAGTG---AGTTAAATTCTT- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3442822 234 - 108792865 GACAGGA---ATATCCATGAACAGTTTTCCGAGACCACTCACTGCGC-T-TCGtattaacagcttgcactggtgcgggacgcttgttaacaaatgatgagccagtgttggtacagc---attaacaagtgttcatagtttacacttgggttcactct-tgtgtcgtgcacattcactatgTT----------AAAGAAAACTAAATGTCCATTCCTGACGAG----------------GTAAATTTCATCCT-CTC-TCAG-------TTACATTTTT- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096010 226 - 7082604 GACAGGG---ATATCCATGAACAACATTCCTAGATCACTCATTGCGT-T-TTGtatgaacagcttacattggtgtggtacg--tgtt-acaaatgacgaaccagcgttggtacagc---attgacaaatgttcatagtttacactggggttcactct-t-----gtacacattcactatgTT----------AAAGAAAATTAAATGTCCATTCCTGACGCG----------------GTTAATTTCATCCT-CTC-TCAG-------TTAAATTTCT- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582117 227 + 5243153 GACAGGG---ATTTCAATGAACAATATTCCTAGGTCACTCATTGCGG-T-TTGtattaacggcttgcattggtgtggtacg--tgtt-ataaatgatgaaccagtgttggtacagc---gttaacaaatgttcatagtttacacttgggttcactct-tgtgttgtacaCATTCACTATGTT--------------AAAATTAAATGTCCATTCCTGACGAG----------------GTTAATTTCATCCT-CTC-TCAG-------TTAAATTTTT- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917008 233 - 1938448 GACAGGG---ATATCCATGAACAATATTCCTAGATCACTCATTGCGT-T-TTGtattaacagcttgcaatggtgtggtacgtttgtt-acaaatgatgaaccagtgttggtacagc---attaacaaatgttcatagcttacacttgggttcactct-tgtgttgtacactttCACTATGTT----------AAAGAAAATTAAATGTCCATTCCTGGCAAG----------------GTTAATTTCATCCT-CTC-TCAG-------TTAAATTTTT- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2525044 235 + 5252280 GACAGGAATTAGATCCATGGATAATATCATTAAATCA-TCATTATAT-TGTTttatgaacgtcttgcatctgtctg--------gtt-acaatttatgaaccagtattgatggagaattattaacaaatgcccatagattata-ttgggttcactct-tctgtcgcaca----ctctgtgCT-TTTATCAACAAAGAGAATC-----TCCATCCCTGCCATC----------------GTTAATTTCATCTTCCTT-TAAGAC---AACTAAATTTTC- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2028544 270 + 64289059 GACGGGG-CTGTATCTGCGGATAATATAACCACGTCATTCATGGTGTCT-TTCtattaacgtcttgctttggtgtggcctctttgtc-acagttgatgaaccagtatcaatccatgattgttgacaaccgtggatcgtttacatttgggttcatgctctgtgttatacatATTCATTGTTATTTTTATCTTCACCAACAATGAAATATGCATTCCTGAGAGGTGTTTGTATCCATTCATTTAGATTTGGCCT-CTTGTGGGAC---AGTGAGATTTT-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 555086 149 + 2232271 GCAGAGGATTATGTCCATGGATAATATTACTGGATCATTCATTGTAT-T-----------------------------------GTT-AT---------------------------CTTTTAAAAAATG----------AAAC----GTCTATTCT---------------------TGAT----------AAAGTTAATT---TATCCATTCCTCATATA----------------GTTAATTTCAGCCT-CTT-GTAAAGGACAATTAGATTTTTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2635606 612 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=1550404.000000 s hg38.chr2_KI270769v1_alt 41978 121 + 120616 CCAGACCCCCACCACCA--TCTTTTTAATCTGTTGTTTGGAATTACCCCTCTC----GTTCC-AAAGAAACATTCACAATGGCAGTGAGCATGT-AAACTTTC-ATAGTGCTTTGAATTTTTAAAGTACC s panTro5.chr2A 3501784 115 + 111504155 ------CCCCACCACCA--TCTTTTTAATCTGTTGTTTGGAATTACCCCTCTC----GTTCC-AAAGAAACATTCACAATGGCAGTGAGCATGT-AAAGTTTC-ATAGTGCTTTGAATTTTTAAAGTACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364507 115 + 114371477 ------CCCCACCACCA--TCTTTTTAATCTGTTGTTTGGAATTACCCCTCTC----GTTCC-AAAGAAACATTCACAATGGCAGTGAGCATGT-AAAGTTTC-ATAGTGCTTTGAATTTTTAAAGTACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240788 121 + 637652 CCAGACCCCCACCACCA--TCTTTTTAATCTGTTGTTTGGAATTACCCCTCTC----GTTCC-AAAGAAACATTCACGATGGCAGTGTGCATGT-AAACTTTC-ATAGTGCTTTGAATTTTTAAACTACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036225 121 + 81552678 CCAGACCCCCACCACCA--TCTTTTTAATCTGTTGTTTGGAATTACTCCTCTC----GTTCC-AAAGAAACATTCACGATGGCAGTGAGCATGT-AAACTTTC-ATAGTGCTTTGAATTTTTAAAGTACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298823 121 + 108979918 CCAGACCCCCACCACCA--TCTTTTTAATCTGTTGTTTGGAATTACGCTTCTC----GTTCC-AAAGAAACATTCACGATGGCAGTCAGCATGT-AAACTTTC-CTAGTGCTTTGAATTTTTAAAGTACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5011584 121 - 111193037 CCAGACCCCCACCACCA--TCTTTTTAATCTGTTGTTTGGAATTACGCTTCTC----GTTCC-AAAGAAACATTCACGATGGCAGTCAGCATGT-AAACTTTC-CTAGTGCTTTGAATTTTTAAAGTACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3405455 121 + 3644372 CCAGACCCCCACCACCA--TCTTTTTAATCTGTTGTTTGGAATTACGCTTCTC----GTTCC-AAAGAAACATTCACGATGGCAGTCAGCATGT-AAACTTTC-CTAGTGCTTTGAATTTTTAAAGTACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360707 121 - 10304083 CCAGACCCCCACCACCA--TCTTTTTAATCTGTTGTTTGGAATTACGCTTCTC----GTTCC-AAAGAAACATTCACGATGGCAGTGAGCATGT-AAACTTTC-CTAGTGCTTTGAATTTTTAAAGTACC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3443404 121 - 107702431 CCAGACCCCCACCACCA--TCTTTTTAATCTGTTGTTTGGAATTACGCTTCTC----GTTCC-AAAGAGACATTCACGATGGCAGTAAGCATGT-AAACTTTC-CTAGTGCTTTGAATTTTTAAAGTACC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 992257 121 + 1565135 CCAGACCCCCACCACCA--TCTTTTTAATCTGTTGTTTGGAATTACGCTTCTC----GTTCC-AAAGAAACATTCACGATGGCAGTGAGCATGT-AAACTTTC-CTAGTGCTTTGAATTTTTAAAGTACC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348815 121 - 13651311 GTAGACCCCCACCACCA--TCTTTTTAATCTGTTGTTTGGAATTACGCTTCTC----GTTCC-AAAGAAACATTCACGATGGCAGTGAGCATGT-AAACTTTC-CTAGTGCTTTGAATTTTTGAAGTACC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443056 124 - 108792865 CCAGACCCCCACCACCA--TCTTTTTAATCTGTTGTTTGGAATTACCCCTCTCTCTTGTTCC-AAAGAAAAATTCGTGACGGGAGCAAGCATGT-AAGCTTT--ATAGTGCTTTGAATTTTTAAAGTACC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096236 126 - 7082604 CCAGACCCCCACCACCAGTTGTTTTTAATCTGTTGTTTGGAATTATCCCTCTCTCTCGTTCC-AAAGAAAAATTCATGACGGCAGTGAGCATGT-AAGCTTT--ATAGTGCTTTGAATTTTTAAAGTACC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582344 124 + 5243153 CCAGACCCCCACCACCA--TTTTTTTAATCTGTTGTTTGGAATTACCCCTCTCTCTTGTTCC-AAAGAAAAATTCATGATGGCAGTGAGCATGT-AAGCGTT--ATAGTGCTTTGAACTTTTAAAGTACC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917241 124 - 1938448 CCAGACCCCCACCACCA--TTTCTTTAATCTATTGTTTGGAATTACCCATCTCTCTCGTTCC-AAAGAAAAATTGATGGCGACAGTGAGCATGT-AAGCTTT--ACAGTGCTTTGAATTTTTAAAGTGCT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2636218 119 - 159902609 CCAGACCCCCATCACCA--CCTTTTTCATCTGTTGTTTAGAATTCTCCCTCTT----GTTCC-AAAGAAAGACTCACAATAACAGTGAGCAGGT-AAACGTAC---AGTGCTTTGAATGTTTAAAGTGTT i micMur3.chr8 I 612 C 0 s otoGar3.GL873658 2525279 123 + 5252280 CCAGACCCTCACCACCA--TCTTTTTAATCTGTTGTTTGAAATTCTCCCTCTT----GTTCCAAAAAAAAGAGTCAAGATAACAGTGTGTAGGTAAAACTTAC-TTAGTTCTTGGAATTGTTAAAGTACC i otoGar3.GL873658 C 0 I 229 s canFam3.chr17 2028814 120 + 64289059 CCAGA-TCTCACCACCA--TCTTTTTAATCTGCTGTTTGGATTTCTCTCTCTT----GTTGG-AAAGAAAGAGCCACGATGAAAGCAGGCAGGT-AAACCTTCCATAGCACTGTGGGT-TTCAAAGTACT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 555235 116 + 2232271 CCAAACTCCCACCACCA--TCTTTTTAGTACGTTGTTGGTACTTTTCCCTCTT----GTTTA-AAAGAAAGAATAATGATGAAGGTGAACATAT-AAAAC----TTAGTGCCTTGAACTTTCATAGTG-- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=231970.000000 s hg38.chr2_KI270769v1_alt 42099 24 + 120616 AC----------------------------------------------------------------------ATTCTGCATTAAATTGCTCACT s panTro5.chr2A 3501899 24 + 111504155 AC----------------------------------------------------------------------ATTCTGCATTAAATTGCTCACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364622 24 + 114371477 AC----------------------------------------------------------------------ATTCTGCATTAAATTGCTCACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240909 24 + 637652 AC----------------------------------------------------------------------ATTCTGCATTAAATTGCTCACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036346 24 + 81552678 AC----------------------------------------------------------------------ATTCTGCATTAAATTGCTCACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298944 24 + 108979918 AC----------------------------------------------------------------------GTTCTGCATTAAATTGCTCACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5011705 24 - 111193037 AC----------------------------------------------------------------------GTTCTGCATTAAATTGCTCACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3405576 24 + 3644372 AC----------------------------------------------------------------------GTTCTGCATTAAATTGCTCACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360828 24 - 10304083 AC----------------------------------------------------------------------GTTCTGCATTAAATTGCTCACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3443525 24 - 107702431 AC----------------------------------------------------------------------GTTCTGCATTAAATTGCTCACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 992378 24 + 1565135 AC----------------------------------------------------------------------TTTCTGCATTAAATTGCTCACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348936 24 - 13651311 AC----------------------------------------------------------------------GTTCTGCATTATATTGCTCACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443180 24 - 108792865 GC----------------------------------------------------------------------ATTCTGCATTCAGTCGCTCACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096362 24 - 7082604 AC----------------------------------------------------------------------ATTCTTCATTCAGTCACTCACT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582468 24 + 5243153 GC----------------------------------------------------------------------TTTCTGCATTCAGTTGCTTACT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917365 24 - 1938448 GC----------------------------------------------------------------------ATTCTGCATTCAGTCGCTCACT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2636337 22 - 159902609 ------------------------------------------------------------------------ACTCTGCATTAAATTGTTCACT i micMur3.chr8 C 0 I 144 s otoGar3.GL873658 2525631 94 + 5252280 acatcgtggcatgctactgtgaacaacaaagtaagactctgtctcaaaaaaaataaaaataaaTAAAGTACTGCTCAGCTTTAAATTGTTCACT i otoGar3.GL873658 I 229 C 0 s canFam3.chr17 2028934 21 + 64289059 ------------------------------------------------------------------------TCTCAACATTAAAGATTTCAC- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 555351 20 + 2232271 AT----------------------------------------------------------------------ACTCTA----AAATAGTTCACT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=1102738.000000 s hg38.chr2_KI270769v1_alt 42123 100 + 120616 ---------TCAAGTTTCCATGCAACTAGAGGGAAAATAGGAGCCCAAAAGATCTTCCCGCTGGAAATAAAG--CA--GCTTGATTATCTTCACTATGCAGTTTAAGAAGTAT s panTro5.chr2A 3501923 100 + 111504155 ---------TCAAGTTTCCATGCAACTAGAGGGAAAATAGGAGCCCAAAAGATCTTCCCACTGGAAATAAAG--CA--GCTTGATTATCTTCACTATGCAGTTTAAGAAGTAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364646 100 + 114371477 ---------TCAAGTTTCCATGCAACTAGAGGGAAAATAGGAGCCCAAAAGATCTTCCCACTGGAAATAAAG--CA--GCTTGATTATCTTCACTATGCAGTTTAAGAAGTAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 240933 100 + 637652 ---------TCAAGTTTCCATGCAACTAGAGGGAAAATAGGAGCCCAAAAGATCTTCCCACTGGAAATAAAG--CA--GCTTGATTATCTTCACTGTGCAGTTTAAGAAGTAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036370 100 + 81552678 ---------TCAAGTTTCCATGCAACTAGAGGGAAAATAGGAGCCCAAAAGATGTTCCTACTGGAAATAAAG--CA--ACTTGATTATCTTCACTATGCTGTTTAAGAAGTAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3298968 100 + 108979918 ---------TCAAGTTTCCATGCAACTAGAGGGAAAATAGGAGCCTAAAACATCTTCCCATTGGAAATAAAG--CA--ACTTGATTGTCTTCACTATGCTGTTTAAGAAGTAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5011729 100 - 111193037 ---------TCAAGTTTCCATGCAACTAGAGGGAAAATAGGAGCCTAAAACATCTTCCCATTGGAAATAAAG--CA--ACTTGATTGTCTTCACTATGCTGTTTAAGAAGTAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3405600 100 + 3644372 ---------TCAAGTTTCCATGCAACTAGAGGGAAAATAGGAGCCTAAAACATCTTCCCATTGGAAATAAAG--CA--ACTTGATTGTCTTCACTATGCTGTTTAAAAAGTAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360852 100 - 10304083 ---------TCAAGTTTCCATGCAACTAGAGGGAAAATAGGAGCCTAAAAGATCTTCCCACTGGAAATAAAG--CA--ACTTGATTATCTTCACTATGCTGTTTAAGAAGTAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3443549 100 - 107702431 ---------TCAAGTTTCCATGCAACTAGAGGGAAAATAGGAGCCTGAAAGATCTTCCCATTGGAAATAAAG--CA--ACTTGATTATCTTCACTATGCTGTTTAAGAAGTAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 992402 100 + 1565135 ---------TCAAGTTTCCATGCAACTAGAGGGAAAATAGGAGCCTAAAAGATCTTCCAATTGGAAATAAAG--CA--ACTTGATTATCTTCACTATGCTGTTTAAGAAGTAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3348960 100 - 13651311 ---------TCAAGTTTCCATGCAACTAGAGGGAAAATAGGAGCCTAAAAGATCTTCCCATTGGAAATAAAG--CA--ACTTGATTATCTTCACTGTGCTGTTTAAGAAGTAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443204 97 - 108792865 ---------TCAAGTTTCCACGCAACTAGAGGCAAAACAGG---CCAAAAATTCTTCGCATTGGAAATAAAG--CA--GCTTGCTTATCCTCACTGCGCTGTTTACGACGTGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096386 97 - 7082604 ---------TCAAGTTTCCTCGCAACTAGAGGCAAAACAGG---CCAAAAATTCTTCCCATTGGAAGTAAAG--CA--ACTTGATTCTCCTCACTGTGCTGTTTAAAACGTGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582492 97 + 5243153 ---------TCAAGTTTCCACGCAACTAGAGGCAAAACAGG---CCAAAAATTCTTCCCATTGGAAATAAAG--CA--ACTTGATTCTCCTCACTGTGCTGTTTAAACCATGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917389 97 - 1938448 ---------TCAAGTTTCCACGCAACTAGAGGCAAAACAGG---CCAAAAATTCTTCCCATTGGAAATAAAG--CA--ACTTGATTATCCACACTGTGCTGTTTAAGACGTGC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2525725 97 + 5252280 ---------TGAACTTCCCATGCAGTCGGAGG---AGTACGTGGCCAGAAGCTCTTTCTATTGGAAGTAAAG--CA--TTTTGATTATCTTCAATGTTTTGTTTAAGGAACAC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2028955 93 + 64289059 ---------TCGACTTTCTCTGCATCTAGAGGAAAACTTTGAAGCCAAAGG---------TGGGAAATAAGGTATA--TTTTGATCCCCCTCAGTGTGGCGTTTAAGACCTGC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 555371 111 + 2232271 TCAACTTTTTAGACTTTTCATGCAACTGGGGGGAAAATGTGAGTCTAAAATATCTGTCCTTTGGAAATAAAA--CATGTTTTGATTATTTTCAATATATTAGTTAAGAAATAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2636359 144 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=477497.000000 s hg38.chr2_KI270769v1_alt 42223 39 + 120616 AGTGCTGCTTCTAATACTAAATTCAGATCTGCATGTTTA s panTro5.chr2A 3502023 39 + 111504155 AGTGCTGCTTCTAATACTAAATTCAGATCTGCATGTTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364746 39 + 114371477 AGTGCTGCTTCTAATACTAAATTCAGATCTGCATGTTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241033 38 + 637652 AGTGCTGCTTCTAATACT-AATTCAGATCTGCATGTTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036470 39 + 81552678 AGTGCTGCTTCTAATACTAAATTCAGATCTGTATGTTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299068 39 + 108979918 GGTGCTGCTTCTAATACTAAATTCAGATCTGTATGTTTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5011829 39 - 111193037 GGTGCTGCTTCTAATACTAAATTCAGATCTGTATGTTTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3405700 39 + 3644372 GGTGCTGCTTCTAATACTAAATTCAGATCTGTATGTTTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360952 39 - 10304083 GGTGCTGCTTCTAATACTAAATTCAGATCTGGATGGTTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3443649 39 - 107702431 GGTGCTGCTTCTAATACTAAATTCAGATCTGTATGTTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 992502 39 + 1565135 GATGCTGCTTCTAATACTAAATTCAGATCTGGATGGTTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349060 39 - 13651311 GGTGCTGCTTCTAATACTAAATTCAGATCTGTATGTTTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443301 39 - 108792865 AGTGCGGCTTCTAATACAAAATTCAGATCTGTGCATTTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096483 39 - 7082604 AGTGCGGCTTCTAATACAAAATTCAGATCTGTACGTTTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582589 39 + 5243153 AGTGCGGCTTCTAATACAAAATTCAGATCTGTACGTTTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917486 39 - 1938448 AGTGCTGCTTCTAATACAAAATTCAGATCTGTACGTTTA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2636503 39 - 159902609 AGTGCTGCTTCTAATACTAAATTCATATCTGTGTGTTTA i micMur3.chr8 I 144 I 890 s otoGar3.GL873658 2525822 13 + 5252280 AGTGC--------------------------TGTGTTCA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2029048 39 + 64289059 AGCGGCTCCTCTAACACCGAGGTCAGGTCTGTGTGCTGA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 555482 37 + 2232271 GGTGCGTCTTCTAATGCTAAATTCAAATCTGTATGTT-- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=61137.000000 s hg38.chr2_KI270769v1_alt 42262 6 + 120616 GACTAA s panTro5.chr2A 3502062 6 + 111504155 GGCTAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364785 6 + 114371477 GGCTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241071 6 + 637652 GTCTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036509 6 + 81552678 GTCTAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299107 6 + 108979918 GTCTAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5011868 6 - 111193037 GTCTAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3405739 6 + 3644372 GTCTAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360991 6 - 10304083 GTCTAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3443688 6 - 107702431 GTCTAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 992541 6 + 1565135 GTCTAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349099 6 - 13651311 GTCTAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443340 6 - 108792865 GTGTAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096522 6 - 7082604 GTCTAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582628 6 + 5243153 GTCTAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917525 6 - 1938448 GTCTAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2525835 6 + 5252280 CTTTCA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2029087 6 + 64289059 GTGCAA i canFam3.chr17 C 0 I 3 s dasNov3.JH580157 555519 3 + 2232271 ---TAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2636542 890 - 159902609 I e mm10.chr12 91410831 3057 - 120129022 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=800078.000000 s hg38.chr2_KI270769v1_alt 42268 80 + 120616 GTTACAAGAGC-TGTAATGACGTCACAGGAAATGGTACTTCAGAACTTAATCC-G---TGCGGATTACCATCAGGTCA-AATTAAA s panTro5.chr2A 3502068 80 + 111504155 GTTACAAGAGC-TGTAATGACGTCACAGGAAATGGTACTTCAGAACTTAATCC-G---TGTGGATTACCATCAGGTCA-AATTAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364791 80 + 114371477 GTTACAAGAGC-TGTAATGACGTCACAGGAAATGGTACTTCAGAACTTAATCC-G---TGTGGATTACCATCAGGTCA-AATTAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241077 80 + 637652 GTTACAAGAGC-TGTAATGACGTCACAGGAAATGGTACTTCAGAACTTCACCC-T---TGCGGATTACCATCAGGTCA-AATTAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036515 80 + 81552678 GTTACAAGAGC-TGTAATGACTTCACAGGAAATGGTACTTCAAAACTTAATCC-T---TATAGCTTACCATCAGGTCA-AATTAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299113 80 + 108979918 GTTACAAGAGC-TGTAATGACTTCACATGAAACTGTACTTCAGAAGTGAATCC-T---TACGGATTACACTCAAGTCA-AATTAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5011874 80 - 111193037 GTTACAAGAGC-TGTAATGACTTCACATGAAACTGTACTTCAGAAGTGAATCC-T---TACGGATTACACTCAAGTCA-AATTAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3405745 80 + 3644372 GTTACAAGAGC-TGTAATGACTTCACACGAAACTGTACTTCAGAAGTGAATCC-T---TACGGATTACACTCGAGTCA-AATTAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3360997 80 - 10304083 GTTACAAGAGC-TGTAATGACTTCACACGAAATCGTACTTCAGAAGTGGATCC-T---TACGGATTACCCTCAAGTCA-AATTAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3443694 80 - 107702431 GTTACAAGAGC-TGTAATGACTTCACACGAAATTGTACTTCAGAAGTGAATCC-T---TATGGATTACCCTCAAGTCA-AATTAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 992547 80 + 1565135 GTTACAGGAGC-TGTAATGACTTCACACGAAACTGTACTTCAGAAGTGGATCC-T---TACGGATTACACTCAAGTCA-AATTAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349105 80 - 13651311 GTTACAAGAGC-TGTAATGACTTCACACGAAATTGTACTTCAGAAGTGAATCC-T---TACAGATTACCTTCAAGTCA-AATTAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443346 78 - 108792865 CGTACAAGAGC-TG---TGACTTCACACGAAATCGTTCTTCCTGACTTACTCCTT---TGTGGATTACCATCAAGTCA-AATTAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096528 78 - 7082604 CTTAGAGGAAC-TA---TGACTTCATATGAAATCGTACTCGATGACTTAATCCTT---TATAGATTACCATCAAGTCA-AATTAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582634 78 + 5243153 CTTACAAGAAC-TA---TGACTTCATACGAAATCGTATTTCATAACTTAATCCTT---TATGGATTTCCATCAAGCCA-AACTAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917531 78 - 1938448 CTTACAAGAGC-TG---TGACTTCATACAAAATCATACTTCATAACTTAATCCTT---TATGGATTACCATCAAGTCA-AATTAAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2525841 80 + 5252280 ATTATTAGATA-TAAAGTGACTTAACACAAAATCTTATTTCAGAACTTAATTC-T---TACAGATTGCCGTCAAATCC-AACTACA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91413888 78 - 120129022 GTTGCAGCGCC-TGCCATGCTGCTATAGACACTC--ACTTCTGAACTTAGACC-TGAGGACAGATCACCCTCAAATCA----TCGA i mm10.chr12 I 3057 C 0 s canFam3.chr17 2029096 79 + 64289059 ATTACAGTTCCTTATAATGCTCTCATATGAAATCGTGCTTCAAGACTCAATCC-T---TACGGATTAC---CAAGTCAAAACTAAA i canFam3.chr17 I 3 C 0 s dasNov3.JH580157 555522 80 + 2232271 GTTATTAGAAC-TATAATGATTTCATATGAAATCTTATTTCAGAACGTAATCC-T---TATGAATTACCATCAAGTCA-AACTAAA i dasNov3.JH580157 C 0 I 56 e micMur3.chr8 2636542 890 - 159902609 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=274475.000000 s hg38.chr2_KI270769v1_alt 42348 31 + 120616 GTGGATGGGGCAAACACTTCCATTAATCGGA s panTro5.chr2A 3502148 31 + 111504155 GTGGTTGGGGCAAACACTTCCATTAATCGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364871 31 + 114371477 GTGGTTGGGGCAAACACTTCCATTAATCGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241157 31 + 637652 GTGGATGGGGCAAACACTTCCATTAATCGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036595 31 + 81552678 GTGGGTGGGGCAAACACTTCCATTAATCGGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299193 31 + 108979918 GTGGATGGGGCAAACACTTCAATTAACCGGA i rheMac8.chr13 C 0 I 45 s macFas5.chr13 5011954 31 - 111193037 GTGGATGGGGCAAACACTTCAATTAACCGGA i macFas5.chr13 C 0 I 26 s macNem1.NW_012011978v1 3405825 31 + 3644372 GTGGATGGGGCAAACACTTCAATTAACCGGA i macNem1.NW_012011978v1 C 0 I 45 s cerAty1.NW_012000820v1 3361077 31 - 10304083 GTGGATGGGGCAAACACTTCAATTAACCGGA i cerAty1.NW_012000820v1 C 0 I 45 s chlSab2.chr14 3443774 31 - 107702431 GTGGATGGGGCAAACACTTCAATTAACCGGA i chlSab2.chr14 C 0 I 45 s manLeu1.NW_012104432v1 992627 31 + 1565135 GTGGATGGGGCAAACACTTCAATTAACCGGA i manLeu1.NW_012104432v1 C 0 I 43 s colAng1.NW_012118821v1 3349185 31 - 13651311 GTGGATGGGGCAAACACTTCAATTAACCGGA i colAng1.NW_012118821v1 C 0 I 45 s calJac3.chr14 3443424 30 - 108792865 ATTAAGG-GGCAAACACTTAAATTAATTGGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096606 31 - 7082604 ATTAAGGAGGCAAACACTTAAATTAATTGGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582712 31 + 5243153 ATCAAGGGGGCAAACACTTAAATTAATTGGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917609 31 - 1938448 ATTAAGGGGGCAAACACTTAAATTAATCGGA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2525921 28 + 5252280 CTG--CTGTGCAGACCCGTAGGTGACCAGG- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91413966 31 - 120129022 GCCAGATGTACAGACTCTCGAATTAACTGAG i mm10.chr12 C 0 C 0 s canFam3.chr17 2029175 27 + 64289059 ACTAATGAGGCAGACACCTGAATT----GGA i canFam3.chr17 C 0 C 0 e micMur3.chr8 2636542 890 - 159902609 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I e dasNov3.JH580157 555602 56 + 2232271 I a score=27607.000000 s hg38.chr2_KI270769v1_alt 42379 4 + 120616 TGCC s panTro5.chr2A 3502179 4 + 111504155 TGCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364902 4 + 114371477 TGCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241188 4 + 637652 TGCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036626 4 + 81552678 TGCC i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5012011 4 - 111193037 TGCT i macFas5.chr13 I 26 I 15 s calJac3.chr14 3443454 4 - 108792865 TGCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096637 4 - 7082604 TGCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582743 4 + 5243153 TGCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917640 4 - 1938448 TGCC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2525949 4 + 5252280 TGCC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91413997 4 - 120129022 TGCT i mm10.chr12 C 0 C 0 s canFam3.chr17 2029202 4 + 64289059 TGCC i canFam3.chr17 C 0 C 0 e micMur3.chr8 2636542 890 - 159902609 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I e dasNov3.JH580157 555602 56 + 2232271 I e colAng1.NW_012118821v1 3349216 45 - 13651311 I e manLeu1.NW_012104432v1 992658 43 + 1565135 I e chlSab2.chr14 3443805 45 - 107702431 I e cerAty1.NW_012000820v1 3361108 45 - 10304083 I e macNem1.NW_012011978v1 3405856 45 + 3644372 I e rheMac8.chr13 3299224 45 + 108979918 I a score=906756.000000 s hg38.chr2_KI270769v1_alt 42383 101 + 120616 GAATCTCTCTACTCTTCCATCAGCTGTCTGCTCCTCTATGTGCATAAAGGCA------------CACTGTCACTG---GATCTTTCTTCCTTTTTCATC---CTCCCTCCAAAATCATG s panTro5.chr2A 3502183 101 + 111504155 GAATCTCTCTACTCTTCCATCAGCTGTCTGCTCCTCTATGTGCATAAAGGCA------------CACTGTCACTG---GATCTTTCTTCCTTTTTCATC---CTCCCCCCAAAATCATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3364906 101 + 114371477 GAATCTCTCTACTCTTCCATCAGCTGTCTGCTCCTCTATGTGCATAAAGGCA------------CACTGTCACTG---GATCTTTCTTCCTTTTTCATC---CTCCCCCCAAAATCATG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241192 101 + 637652 GAATCTCTCTACTCTTCCATCAGCTGTCTGCTCCTCTATGTGCGTAAAGGCA------------CACTGTCGCTG---GATCTTTCTTCCTTTTTCATC---CTCCCTCCAAAATCATG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036630 101 + 81552678 GAATCTCTGTACTCTTCCATCAGCTGTCTGCTCCTCTGTGTGCGTAAAGGCA------------CACAGTCACTG---GGTCTTCCGTCCTTTTTCATC---CTCCCTCCAAAATCATG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299269 113 + 108979918 GAATCTCTCTACTCGTCCCTCAGCTGTCTGCTCCTCTGTGTGCCTAAAGGCACACTGTCACTGTCACTGTCACTG---GGCCTTTCGTCCTTTTTCATC---CTCCCTTCAAAATCATG i rheMac8.chr13 I 45 C 0 s macFas5.chr13 5012030 113 - 111193037 GAATCTCTCTACTCGTCCCTCAGCTGTCTGCTCCTCTGTGTGCGTAAAGGCACACTGTCACTGTCACTGTCACTG---GGCCTTTCGTCCTTTTTCATC---CTCCCTTCAAAATCATG i macFas5.chr13 I 15 C 0 s macNem1.NW_012011978v1 3405901 113 + 3644372 GAATCTCTCTACTCGTCCCTCAGCTGTCTGCTCCTCTGTGTGCGTAAAGGCACACTGTCACTGTCACTGTCACTG---GGCCTTTCGTCCTTTTTCATC---CTCCCTTCAAAATCATG i macNem1.NW_012011978v1 I 45 C 0 s cerAty1.NW_012000820v1 3361153 113 - 10304083 GAATCTCTCTACTCGTCCCTCAGCCGTCTGCTCCTCTGTGTGCGTAAAGGCTCACTGTCACTGTCACTGTCACTG---GGCCTTTCGTCCTTTTTCATC---CTCCCTTCAAAATCATG i cerAty1.NW_012000820v1 I 45 C 0 s chlSab2.chr14 3443850 107 - 107702431 GAATCTCTCTACTCGTCCCTCAGCTGTCTGCTCCTCTGTGTGCGTAGAGGCA------CACTGTCACTGTCACTG---GACCTTTCATCCTTTTTCATC---CTCCCTTCAAAATCATG i chlSab2.chr14 I 45 C 0 s manLeu1.NW_012104432v1 992701 113 + 1565135 GAATCTCTCTACTCGTCCCTCAGCTGCCTGCTCCTCTGTGTGCGTAAAGGCACACTGTCACTGTCACTGTCACTG---GGCCTTTCGTCCTTTTTCATC---CTCCCTCCAAAATCATG i manLeu1.NW_012104432v1 I 43 C 0 s colAng1.NW_012118821v1 3349261 113 - 13651311 GAATCTCTCTACTCATCCCTCAGATGTCTGCTCCTCTGCCTGCGTAAAGGCACACTGTCACTGTCACCGTCACTG---GGCCTTTCGTCCTTTTTCATC---CTCCCTCCAAAATCATG i colAng1.NW_012118821v1 I 45 C 0 s calJac3.chr14 3443458 100 - 108792865 AGATCTCTCTGCTCCTGTGTCAGCCGTCAGCTCCTCTGTGTAAGTA-AAGCA------------CACTGTCATTG---CATCTTTCATCCCTTTTTATC---CTCCCTCCAAAATCATG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096641 106 - 7082604 AGATCTCTCTGCTCCTGTATCAGCTGTCAGCTCCTCTGTGTGAGTG-AAGCA------------CACTGTCACTGGGTCGTCTTTCATCCCTTTTTATTAAACTCCCTCCAAAATCATG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582747 102 + 5243153 AAG--TCTCTGCTCCTGTATCAGCCGTCAGCTCCTCTGTGTAAGTATAAGCA------------CACTGTCATTG---GGCCTTTCGTCCCTTTTTATTAAACTCCCCCCAAAATCATG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917644 100 - 1938448 AAATCTCTCTGCTCCTGCATCAGCTGTCAGCTCCTCTGTGTAAGTA-AAGCA------------CACTGTCATTG---GGTCTTTCATCCCTTTTTATC---CTCCCTCCAAAATCATG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2525953 76 + 5252280 ---------CACTCACACCCCCAC---CAGCGTCACTG---------AGGGA------------C----TTGCAG---GGTCTGCATTCCCGTGCCGCC---CTCCCTCGTAAATCACC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91414001 82 - 120129022 --AAGTTTCCGTCCTCCCTGCTGCCATCTGCTCCTCGA--------------------------AATTCTCACCC---AGTCTTCAGTCTTCCTCTG-----CTCCCTCCAGTGTC-TG i mm10.chr12 C 0 C 0 s canFam3.chr17 2029206 98 + 64289059 AAGTCTCTGTCCCCTTCCTTCATCTCTCCAGCCCTCTG--AAAATAAAGGTA------------AATTGTCACTG----GTCTTTCGTCCCTTCCTATC---TTCCCTCCAGAATCGTG i canFam3.chr17 C 0 C 0 e micMur3.chr8 2636542 890 - 159902609 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I e dasNov3.JH580157 555602 56 + 2232271 I a score=754555.000000 s hg38.chr2_KI270769v1_alt 42484 65 + 120616 AAATTCACATTTTGAGTTCTCAAATTAAATTCTGAAAC-------TTTTTTTTATCAACACATAACCATATG s panTro5.chr2A 3502284 60 + 111504155 AAATTCACATTTTGAGTTCTCAAATT-----CTGAAAC-------TTTTTTTTATCAACACATAACCATATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365007 59 + 114371477 AAATTCACATTTTGAGTTCTCAAATT-----CTGAAAC--------TTTTTTTATCAACACATAACCATACG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241293 65 + 637652 AAATTCACATTTTGAGTTCTCAAATTAAATTCTGAAAC-------TTTTTTTTATCAACACATAACCATATG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036731 55 + 81552678 AAATTCACATTTTGAGTTCTCAAATT-----CTGAAAC------------TTTATCAGCACATAACCATACG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299382 65 + 108979918 AAATTCACATTTTGAGTTCTCAAATTAAATTCTGAAAC-------TTTTTTTTATCAACACATAACCATACG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5012143 65 - 111193037 AAATTCACATTTTGAGTTCTCAAATTAAATTCTGAAAC-------TTTTTTTTATCAACACATAACCATACG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406014 65 + 3644372 AAATTCCCATTTTGAGTTCTCAAATTAAATTCTGAAAC-------TTTTTTTTATCAACACATAACCATACG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3361266 65 - 10304083 AAATTCACATTTTGAGTTCTCAAATTAAATTCTGAAAC-------TTTTTTTTATCAACACATAACCATACG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3443957 65 - 107702431 AAATTCACATTTTGAGTTCTCAAATTAAATTCTGAAAC-------TTTTTTTTATCAACACATAACCATACG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 992814 66 + 1565135 AAATTCACATTTTGAGTTCTCAAATTAAATTCTGAAAC------TTTTTTTTTATCAACACATAACCATACG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349374 66 - 13651311 AAATTCACATTTTGAGTTCTCAAATTAAATTCTGAAAC------TTTTTTTTTATCAACACATAACCATACA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443558 62 - 108792865 AAATTCACATTTTGAGTTCTCAAATTAAATTCTGAAAC--------TTTTTTTATCA--ACATAACCATACG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096747 64 - 7082604 AAATTCACATTTTGAGTTCTCAAATTAAATTCTGAAAC--------TTTTTTTATCAACACATAACCATACG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582849 65 + 5243153 AAATTCATATTTTGAGTTCTCAAATTAAATTCTGAAAC-------TTTTTTTTATCAACATGTAACCATACG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917744 65 - 1938448 AAATCCACATTTCAAGTTCTCAAATTAAATTCTGAAAC-------TTTTTTTTGTCAACACATAACCATACG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2526029 53 + 5252280 AGGTGCACATTTAGAGTTCCCAGATTAAAC------AC-------TGTTTTTTGT------ATAACCATACG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91414083 57 - 120129022 CAGCTCACAGGTCTCTTTCTCAGG-CAAATTCTGAATC---------TTTTATATCCACACAAAACC----- i mm10.chr12 C 0 C 0 s canFam3.chr17 2029304 72 + 64289059 AAGTTCACATTTCTAGCTCCCAATCTGAATTTGGAGCCTTTTTTTTTTTTTTTTTTGATACATAACCATACA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 555658 62 + 2232271 NAATTCACATTTCTAGTTCTCAAACTAGATTGTGAAAC----------TTTTTACCAACACATAACCATAAA i dasNov3.JH580157 I 56 C 0 e micMur3.chr8 2636542 890 - 159902609 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=995831.000000 s hg38.chr2_KI270769v1_alt 42549 74 + 120616 TGATATCTCAGAATTAAATATTCAGCATGTTTCCAGTGTCGGATTTTATTTTTCATGACAAAATTACCTCACCT s panTro5.chr2A 3502344 74 + 111504155 TGATATCTCAGAATTAAATATTCAGCATGTTTCCAGTGTCGGATTTTATTTTTCATGACAAAATTACCTCACCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365066 74 + 114371477 TGATATCTCAGAATTAAATATTCAGCATGTTTCCAGTGTCGGATTTTATTTTTCATGACAAAATTACCTCACCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241358 74 + 637652 TGATATCTCAGAATTAAATATTTGGCATGTTTCCAGTGTCGGATTTTATTTTTCATGACAAAATTACCTCACCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036786 74 + 81552678 TGATATCTCAGAATTAAATATTCAGCATGTTTCCAGTGTCGGATTTTATTTTTCATGACAAAATTACCTCACTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299447 74 + 108979918 TGATATCTCAGAATTAAATATTCAGCATGTTTCAAATGTCAGATTTTATTTTTCATGACAAAATTACCTCACCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5012208 74 - 111193037 TGATATCTCAGAATTAAATATTCAGCATGTTTCAAATGTCAGATTTTATTTTTCATGACAAAATTACCTCACCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406079 74 + 3644372 TGATATCTCAGAATTAAATATTCAGCATGTTTCAAATGTCAGATTTTATTTTTCATGACAAAATTACCTCACCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3361331 57 - 10304083 TGATATCT-----------------CATGTTTCAAATGTCAGATTTTATTTTTCATGACAAAATTACCTCACCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444022 74 - 107702431 TGATATCTCAGAATTAAATATTCAGCATGTTTCAAATGTCAGATTTTATTTTTCATGACAAAATTACCTCACCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 992880 74 + 1565135 TGATATCTCAGAATTAAATACTTAGCATGTTTCAAATGTCAGATTTTATTTTTCATGACAAAATTACCTCACCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349440 74 - 13651311 TAATATCTCAGAATTAAATATTCAGCATGTTTCAAATGTCAGATTTTATGTTTCATGACAAAATTACCTCACCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443620 74 - 108792865 TGATATCTCAGAATTGAATTCTCAGCATGTTTCAAATGTCAGATTCTATTTTTCATGACAAAATTACCTCACCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096811 74 - 7082604 TGATATCTCAGAATTAAATTTTCAGCATGTTTCAAATGTCAGATTTTATTTTTCATGGCAAAATTACCTCACCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582914 73 + 5243153 TAATATCTCAGAATTAAATTTTCAGCGTGTTTCAAATGTCAGATTTTATTTTTCATGAC-AAATTACGTCACCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917809 74 - 1938448 TGATATCTCAGAATTAAATTTTCAGCATGTTTCAAATGTCAGATTTTATTTTTCATGACAAAATTACCTCACCT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2637432 74 - 159902609 TGATAGCTCAGAATTAAAAATTCAGCATGTTTCAAGTGTCTGATTTTATTTTCCATGACATAATTAATTCACCT i micMur3.chr8 I 890 I 99 s otoGar3.GL873658 2526082 68 + 5252280 TGATAGCTCAGAATTAAATACTCAGCATGTTTCAGATGCCTGACTTTATTTC------CATGACTAGTCCCCTC i otoGar3.GL873658 C 0 I 2 s mm10.chr12 91414140 65 - 120129022 TGACATGGCTGCATAATATTGTAAACATCTG---------GAATTTCATTCTTTACTGCAAAGTCAGTTTACCT i mm10.chr12 C 0 C 0 s canFam3.chr17 2029376 74 + 64289059 TGATCATTCAGGATTCATTGTTAAGCCTGTTTCAAATGTCTTATTTTGTTTTCTGTGACAAAATTAGTTCACCC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 555720 74 + 2232271 TGATAGCTTAGaattaaatatttataaaaatttGAATGTCTTATTTTGTTTTTCACAACAAAATTAATCCACTC i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=907590.000000 s hg38.chr2_KI270769v1_alt 42623 100 + 120616 TGCAGAGTGACCACGTTCTGCTT----------TAGATTTCCAGGTCACAATGCTTTGCATCAGAACTCCCGAGCGTTGATGGTTGGACATGTGATCGCTGCTTTATTTG s panTro5.chr2A 3502418 100 + 111504155 TGCAGAGTGACCACGTTCTGCTT----------TAGATTTCCAGGTCACAATGCTTTGCATCAGAACTCTCGAGCGTTGATGGTTGGACATGTGATCGCTGCTTTATTTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365140 100 + 114371477 TGCAGAGTGACCACGTTCTGCTT----------TAGATTTCCAGGTCACAATTCTTTGCATCAGAACTCTCGAGCGTTGATGGTTGGACATGTGATCGCTGCTTTATTTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241432 100 + 637652 TGCAGAGTGACCACGTTCTGCTT----------TAGATTTCCAGGTCACAATGCTTTGCATCAGAACTCCCAAACGTTGATGGTTGGACATGTGATCGCTGCTTTATTTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036860 100 + 81552678 CGCAGGGTGACCATGTTCTGCTT----------TAGATTTCCAGGTCACAATGCTTTGCATCAGAACTCCCGAGCGTTGATTGTTGGACACGTGATTGCTGCTTTACTTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299521 104 + 108979918 TGCAGAGTGACCACGTTCTGCTT------GAGTTAGATTTCCAGGTCACAATGCTTTGCATCAGAACTCCCGAGTGTTGATTGTTGGACACGTGATTGCTGCTTTATTTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5012282 104 - 111193037 TGCAGAGTGACCACGTTCTGCTT------GAGTTAGATTTCCAGGTCACAATGCTTTGCATCAGAACTCCCGAGTGTTGATTGTTGGACACGTGATTGCTGCTTTATTTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406153 104 + 3644372 TGCAGAGTGACCACGTTCTGCTT------GAGTTAGATTTCCAGGTCACAATGCTTTGCATCAGAACTCCCGAGTGTTGATTGTTAGACACGTGATTGCTGCTTTATTTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3361388 104 - 10304083 TGCAGAGTGACCACGTTCTGCTT------GAGTTAGATTTCCAGGTCACAATGCTTTGCATCAGAACTCCCGAGTGTTGATTGTTGGACACGTGATTGCTGCTTTGTTTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444096 104 - 107702431 TGCAGAGTGACCACGTTCTGCTT------GAGGTAGATTTCCAGGTCACAGTGCTTTGCATCAGAACTCCCGAGTGTTGATTGTTGGACACGTGATTGCTGCTTTATTTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 992954 104 + 1565135 TGCAGAGTGACCACGTTCTGCTT------GAGTGAGATTTCCAGGTCACAATGCTTTGCATCAGAACTCCCGAGTGTTGATTGTTGGACACGTGATTGCTGCTTTATTTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349514 104 - 13651311 TGCAGAGTTTCCATGTTCGGCTT------GAGTTAGATTTCCAGGTCACAATGCTTTGCGTCGGAACTCCTGAGTGTTGATTGTTGGACACGTAATTGCTGCTTTGTTTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443694 102 - 108792865 TGCAGAGTGACCACGTTCTGCTC------GAGTTCGA-TTCCGGGTCTTAATGCTTCACAT-AGAACTCCCAAGCGTTCATTGTTGGACATATGATTGCTGGTTTATTTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096885 102 - 7082604 TGCAGAGTGACCACGTTCTGCTT------GAGTTCGA-TTCCCGGTCATAATGCTTCACAC-AGAATTCCTAGGCATTCATTGTTGGACATGTGATTGCTGGTTCATTTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 582987 102 + 5243153 TGCAGAGTGACCATGTTCCGCTT------GAGTTCGA-TTCCAGGTCGTAATGCTTCACAT-AGAACTCCCAAGCGTTCACTGTTGGACATGTGATTGCTGGTTTATTTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917883 102 - 1938448 TGCAGAGTGACCACGTTCTGCTT------GAGTTCGA-TTCCAGGTCGTAATGCTTCACTT-ATAACTCCCAAGCGTTCATTGTTGGACATGTGATTGCTGGTTTATTTG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2526152 86 + 5252280 TGC------CTCAGTTTCCTCTC----------TG---TTCCGGGT-----TGTTGTGCACCAGAGCTCTTAGGCGCTTAACTGCCGACACCGTCTTTCTACCCTACTCC i otoGar3.GL873658 I 2 C 0 s mm10.chr12 91414205 72 - 120129022 CCCACAGCTAACATGTTAGGCTGACATTAGATTTAGATTTATAGTTCACATTACTCTGCCT--GAACTCCTGAG------------------------------------ i mm10.chr12 C 0 C 0 s canFam3.chr17 2029450 87 + 64289059 CTCACAGTTCACATCTTCTGCTT------AGGGTACATTTCCAG----------TTTACGCCAAAGCTCCTGAGCATTTATCATTTGAAGCATATTTTCCTCA------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 555794 69 + 2232271 -TCGGAGTTTAGATGTCCTGCAT------AAATTAGCTTTCCAATTTATATTACTTGCTGCTAGAATTCTTGAGCA---------------------------------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2637506 99 - 159902609 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=508557.000000 s hg38.chr2_KI270769v1_alt 42723 39 + 120616 TTCGGAGAAGGCTCGTTAGTTCATCTTACTGCTTTTCAC s panTro5.chr2A 3502518 39 + 111504155 TTCAGAGAAGGCTCGTTAGTTCATCTTACTGCTTTTCAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365240 39 + 114371477 TTCGGAGAAGGCTCGTTAGTTCATCTTACTGCTTTTCAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241532 39 + 637652 TTCGGAGAAGGCTCGTTAGTTCATCTTACTGCTTTTCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036960 39 + 81552678 TTTGGAGAAGGCTCGTTAGTTCATCTTACTGCTTTTCAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299625 39 + 108979918 TTTGGAGAAGGCTCATTAGTTCATCTTACTGCTTTTCAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5012386 39 - 111193037 TTTGGAGAAGGCTCATTAGTTCATCTTACTGCTTTTCAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406257 39 + 3644372 TTTGGAGAAGGCTCATTAGTTCATCTTACTGCTTTTCAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3361492 39 - 10304083 TTTGGAGAAGGCTCATTAGTTCATCTTACTGCTTTTCAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444200 39 - 107702431 TTTGGAGAAGGCTCATTCATTCATCATCCTGCTTTTCAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 993058 39 + 1565135 TTTGGAGAAGGCTCATTAGTTCATCTTACTGCTTTTCAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349618 39 - 13651311 TTTGGAGAAGGCTCATTAGTTCATCTTACTGCTTTTCAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443796 39 - 108792865 TCCGGAGAAGGCCCGTTAGTTCCTCTTACTGCTTTTCAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3096987 39 - 7082604 TTTGGAGAAGGCTTATTAGTTCATCTTACTGCTTTTCAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 583089 39 + 5243153 TTTGGAGAAGCCTCATTAGTTCATCTTACTGCTTTTCAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1917985 39 - 1938448 TTTGGAGAAGGCTCATTAGTTCATCTTACTGCTTTTTAT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2637605 39 - 159902609 TTCGGGGAAGGCCTGTTAGGTGATCTTACTGCTCTTCAC i micMur3.chr8 I 99 C 0 s otoGar3.GL873658 2526238 39 + 5252280 TCTGGGCAAGGCCTGTTAGTGAATCTTACTGCTTTACTC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91414277 30 - 120129022 TACCGAGAAGGGT---------GTCCTCCTGCTTCCTGC i mm10.chr12 C 0 I 43 s canFam3.chr17 2029537 38 + 64289059 TTCTGAATGAGCTAGTTA-CTGATCTTTGTGCTTTTCAC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 555863 33 + 2232271 TTCTGAAAAGGCTAGTGAG------TTAGGGTTTTTCAC i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=1157265.000000 s hg38.chr2_KI270769v1_alt 42762 100 + 120616 TTTGCCCACC-GTTTTTATGAAATCTGGCATTTTCAGTCTTTTC-----TTAGAACAAACTACTAAAAATAGGGGAATTTTCAGTTTGGGGT-TCCGTATCTACCAT s panTro5.chr2A 3502557 100 + 111504155 TTTGCCCACC-GTTTTTATGAAATCTGGCATTTTCAGTCTTTTC-----TTAGAACAAACTACTAAAAATAGGGGAATTTTCAGTTTGGGGT-TCCGTATCTACCAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365279 100 + 114371477 TTTGCCCACC-GTTTTTATGAAATCTGGCATTTTCAGTCTTTTC-----TTAGAACAAACTACTAAAAATAGGGGAATTTTCAGTTTGGGGT-TCCGTATCTACCAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241571 100 + 637652 TTTGCCCGCC-GTTTTTATGAAATCTGGCATTTTCAGTCTTTTC-----TTAGAACAAACTACTAAAAATAGGGGAATTTTCAGTTTGGGGT-TCCGTATCTACCAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3036999 100 + 81552678 TTTGCCCACC-GTTTTTATGAAATCTGGCATTTTCAGTCTTTTC-----TTAGAACAAACTACTAAAAATATGGGAATTTTCAGTTTGGGGT-TCCGTATCTACCAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299664 100 + 108979918 TTTGCTCACT-GTTTTTATGAAATCTGACATTCTCAGTCTTTTC-----TTAGAACAAACCACTAAAAATATGGGAATTTTCAGTTCGGGGC-CCCATATCTACCAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5012425 100 - 111193037 TTTGCTCACT-GTTTTTATGAAATCTAACATTCTCAGTCTTTTC-----TTAGAACAAACCACTAAAAATATGGGAATTTTCAGTTCGGGGC-CCCATATCTACCAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406296 100 + 3644372 TTTGCTCACT-GTTTTTATGAAATCTAACATTCTCAGTCTTTTC-----TTAGAACAAACCACTAAAAATATGGGAATTTTCAGTTTGGGGC-CCCATATCTACCAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3361531 100 - 10304083 TTTGCTCACT-GTTTTTATGAAATCTAACATTCTCAGTCTTTTC-----TTAGAACAAACCACTAAAAATATGGGAATTTTCAGTTTGGGGC-TCCATATCTACCAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444239 100 - 107702431 TTTGCTCACT-GTTTTTATGAAATCTGACATTCTCAGTCCTTTC-----TTAGAACAAACCACTAAAAATATGGGAATTTTCAGTTTGGGGC-CCCATATCTACCAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 993097 101 + 1565135 TTTGCTCACTGGTTTTTATGAAATCTAACATTCTCAGTCTTTTC-----TTAGAACAAATCACTAAAAATATGGGAATTTTCAGTTTGGGGC-CCCATATCTACCAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349657 100 - 13651311 TTTGCTCACT-GTTTTTATGAAATCTAACATTCTCAGTCTTTTC-----TTAGAACAAACCACTAAAAATATGGGAATTTTCAGTTTGGGGC-TCCATATCTACCAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443835 61 - 108792865 TTTGCTCACC-ATTTTTAGGAAATTTGG--------------------------------------------GAGAACTTTCAGTTTGGGAT-TCCGTATCTACCGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3097026 98 - 7082604 TTTGCTCACC-ATTTTGATGAAATTTGGCATTTTCAGTCTTTTC-----TTAGAACAAACTACTAAAAATATGAGAACTTTCAGTTTGGGGT-TCCATATCTAC--T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 583128 100 + 5243153 TTTGCTCACC-ATTTTTATGAAATTTGGCATTTTCAGTCTTTTC-----TTAGAACAAACTACTAAAAATAGGAGAACTTTCAGTTTGGGGT-TCCGTATCTACCAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1918024 100 - 1938448 TTTGCTCACC-ATTTTTATGAAGTTTGGCATTTTCAGTCTTTTC-----TTAGAACAAACTACTAAAAATATGAGAACTTTCAGTTTGGGGT-TCCATGTGTACCAT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2637644 105 - 159902609 TTTGCTCACC-ATTCTCATGACAGTTGGTGTTTCCAGTCTTTTTTTTTTTTAGAACAAACTATTAAAGATGTGGAAATTTTCAGTTTGGGGT-TCCATTTCTACCAT i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2526277 81 + 5252280 CTTGCTTATT-CATGTTATGAAATTTGACATTCCTGGCATTTTT----------------TATTAA--------GAAATTTCAGCATGGGGT-TCCATTTTTAACGT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2029575 93 + 64289059 TTTGCTTGCA-GTTTTAGTGAACTTTGGCATTTCCAGCC--TTC-----CTAGAACAAATCGTTATAGACATGGAAATGTTCCAGTTGGGGT-TCCAT-----TCAT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 555896 95 + 2232271 TTTGTTCATC-ATTTTTACAAACTTTGGCATTTCCAAG-----------TTTAGACAAACTATTATAGATATGGAAATTTTCAGTTTTGGGTCTCCATTTCCAACAT i dasNov3.JH580157 C 0 I 228 e mm10.chr12 91414307 43 - 120129022 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=215943.000000 s hg38.chr2_KI270769v1_alt 42862 15 + 120616 GAGAACACCCAAATG s panTro5.chr2A 3502657 15 + 111504155 GAGAACACCCAAATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365379 15 + 114371477 GAGAACACCCAAATG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241671 15 + 637652 GAGAACACCCACATG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037099 15 + 81552678 GAGAACACCCAAATG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299764 15 + 108979918 GAGAACATCCAGATG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5012525 15 - 111193037 GAGAACATCCAGATG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406396 15 + 3644372 GAGAACATCCAGATG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3361631 15 - 10304083 GAGAACACCCAGATG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444339 15 - 107702431 GAGAACACCCAAATG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 993198 15 + 1565135 GAGAACACCCAAATG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349757 15 - 13651311 GAGAACACCCAAATG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443896 15 - 108792865 GAGAACTCCCGAATG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3097124 15 - 7082604 GAGAACACCCGAATG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 583228 15 + 5243153 GAAAACACCTGAATG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1918124 15 - 1938448 GAGAACACCCGAATG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2637749 15 - 159902609 TAGAACACCCAAATg i micMur3.chr8 C 0 I 509 s otoGar3.GL873658 2526358 15 + 5252280 TAGAACACCCAGATG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2029668 15 + 64289059 GAGAACACCCAGCTG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 556219 15 + 2232271 aagaATGCCCAAATG i dasNov3.JH580157 I 228 C 0 e mm10.chr12 91414307 43 - 120129022 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=265882.000000 s hg38.chr2_KI270769v1_alt 42877 22 + 120616 GAGACCTCTCCTTATCCTGTCT- s panTro5.chr2A 3502672 22 + 111504155 GAGACCTCTCCTTATCCTGTCT- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365394 22 + 114371477 GAGACCTCTCCTTATCCTGTCT- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241686 22 + 637652 GAGACCTCTCCTTATCCTGTCT- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037114 22 + 81552678 GAGACCTCTCCTTACCCCGTCT- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299779 22 + 108979918 GAGACCTCTCCTCACCCTGTCT- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5012540 22 - 111193037 GAGACCTCTCCTCACCCTGTCT- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406411 22 + 3644372 GAGACCTCTCCTCACCCTGTCT- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3361646 22 - 10304083 GAGACCTCTCCTCACCCTGTCT- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444354 22 - 107702431 GAGACGTCTCCTTACCCTGTCT- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 993213 22 + 1565135 GAGACCTCTCCTTACCCTGTCT- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349772 22 - 13651311 GAGACCTCTCCTTACCCTGTCT- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443911 22 - 108792865 GAGGCCTCTCCTTACGCTGTCT- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3097139 22 - 7082604 GAGACCTCTCCTTACCCTGTCT- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 583243 22 + 5243153 GAGACCTCTCCTTACCCTGTCT- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1918139 22 - 1938448 GAGACCTAGCCTTACCCTGTCT- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2526373 22 + 5252280 AAGGCCTCTTCTTAACCTGTGT- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2029683 22 + 64289059 AAGGCCTCTCCTGAACCCATCT- i canFam3.chr17 C 0 I 572 s dasNov3.JH580157 556234 23 + 2232271 AGGGCTTCTTTGTAAACCGTCTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2637764 509 - 159902609 I e mm10.chr12 91414307 43 - 120129022 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=381965.000000 s hg38.chr2_KI270769v1_alt 42899 39 + 120616 G---CACAAGA-------------TACAG---------------GCCTTGGCCAGTCACTGGGCTGTAGC s panTro5.chr2A 3502694 39 + 111504155 G---CACAAGA-------------TACAG---------------GCCTTGGCCAGTCACTGGGCTGTAGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365416 39 + 114371477 G---CACAAGA-------------TACAG---------------GCCTTGGCCAGTCACTGGGCTGTAGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241708 39 + 637652 G---CACAAGA-------------TACAG---------------GCTTTGGCCAGTCACTGGGCTGTAGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037136 39 + 81552678 G---CACGAGA-------------TACAG---------------GCCTTGGCCAGTCCCTGGGCTATAGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299801 39 + 108979918 G---CACTAGA-------------TACAG---------------GCCTTGGCCAGTCACTGGGCTGTAGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5012562 39 - 111193037 G---CACTAGA-------------TACAG---------------GCCTTGGCCAGTCACTGGGCTGTAGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406433 39 + 3644372 G---CACTAGA-------------TACAG---------------GCCTTGGCCAGTCACTGGGCTGTAGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3361668 39 - 10304083 G---CACTAGA-------------TACAG---------------GCCTTGGCCAGTCACTGGGCTGTAGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444376 39 - 107702431 G---CACTAGA-------------TACAG---------------GCCTTGGCCAGTCACTGGGCTGTAGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 993235 39 + 1565135 G---CACTAGA-------------TACAG---------------GCCTTGGCCAGTCACTGGGCTGTAGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349794 39 - 13651311 G---CACTAGA-------------TACAG---------------GCCTTGGCCAGTCACTGGGCTGTGGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443933 38 - 108792865 G---CACAAGA-------------TACAG---------------GACGCGGCCAGTCACT-GGCTGTAGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3097161 38 - 7082604 G---CACAAGG-------------TACAG---------------GACTCAGCCAGTCGCT-GGCTGTAGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 583265 38 + 5243153 G---CACAAGA-------------TACAG---------------GACTTGGCCGGTCACT-GGCTGTGGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1918161 38 - 1938448 G---CACAAGA-------------TACAG---------------GACTCGGCCAGTCACT-GGCTGTAGC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2526395 62 + 5252280 AGCCCACAGGAAGTTT--------TGCAGTGAAATTCCAAATTTGTCTTTGCTGATCAATGAGCTGGAAC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 556257 52 + 2232271 G---CAGAAGAAATATTGCAATAATATAG---------------GCCTTTACCAATAGATGAGCTATGAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2637764 509 - 159902609 I e mm10.chr12 91414307 43 - 120129022 I e canFam3.chr17 2029705 572 + 64289059 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=822631.000000 s hg38.chr2_KI270769v1_alt 42938 86 + 120616 TGAAGCCACACGTGGATTGCACATGAC--TGTGGCAGACGC---G-TACAGAGGCA--GTGACCCAAGCCTCAGTTTGTCTTCATGCTTCAGGG s panTro5.chr2A 3502733 86 + 111504155 TGAAGCCACACGTGGGTTGCACATGAC--TGTGGCAGACTC---G-TACAGAGGCA--GTGACCCAAGCCTCAGTTTGTCTTCATGCTTCAGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365455 86 + 114371477 TGAAGCCACACGTGGGTTGCACATGAC--TGTGGCAGACTC---G-TACAGAGGCA--GTGACCCAAGCCTCAGTTTGTCTTCATGCTTCAGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241747 86 + 637652 TGAAGCCACACGTGGGTTGCACATGAC--TGTGGCAGACTC---G-TACAGAGGCA--GTGACCCAAGCCTCAGTTTGTCTTCATGCTTCAGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037175 86 + 81552678 TGAAGCCGCACGTGGGTCGCACATGAC--TGTGGCAGACTC---G-TACAGAGGCA--GTGACCCAAGCCTCAGTTTGTCTTCATGCTTCAGGG i nomLeu3.chr19 C 0 I 9 s rheMac8.chr13 3299840 86 + 108979918 TGAAGCCACACGTGGGTTGCACATGGC--TGTGGCGGACTC---A-TACAGAGGCA--GTGACCCAAGCCTCAGTTTGTCTTCATGCTTCAGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5012601 86 - 111193037 TGAAGCCACACGTGGGTTGCACATGGC--TGTGGCGGACTC---A-TACAGAGGCA--GTGACCCAAGCCTCAGTTTGTCTTCATGCTTCAGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406472 86 + 3644372 TGAAGCCACACGTGGGTTGCACATGGC--TGTGGCGGACTC---A-TACAGAGGCG--GTGACCCAAGCCTCAGTTTGTCTTCATGCTTCAGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3361707 86 - 10304083 TGAAGCCACACGTGGGTTGCACATGTC--TGTGGCAGACTC---A-TACAGAGGCA--GTGACCCAAGCCTCAGTTTGTCTTCATGCTTCAGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444415 86 - 107702431 TGAAGCCACACATGGGTTGCACATGGC--GGTGGCGGACTC---A-TACAGAGGCA--GTGACCCAAGCCTCAGTTTGTCTTCATGCTTCACGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 993274 86 + 1565135 TGAAGCCACACGTGGGTTGCACATGGC--TGTGGCAGACTC---A-TACAGAGGCA--GTGACCCAAGCCTCAGTTTGTCTTCATGCTTCAGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349833 86 - 13651311 TGAAGCCACACGTGGGTTGCACATGGC--TGTGGCAGACTC---A-TACAGAGGCA--GTGACCCAAACCTCAGTTTGTCTTCATGCTTCAGGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3443971 88 - 108792865 TGCAGCCACT-GGGGGTCGCGCATGGC--TGTGGCAGACTCGTTA-TCCAGAGGCC--GTGACCCAAGCCTCAGTTCGTCTTCATGCTTCAGGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3097199 87 - 7082604 TGGAGCCACG-TGGGGTCGCACGTGGC--TGTGACAGACTCACCG-TCCAGAGGCA--GTGACCCAAGCCTC-GTTTGTCTTCATGCTTCAGCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 583303 84 + 5243153 TGGAGCCACGTGGGGGTCACACA------TGTGACAGACTCCTTA-TCCAGAGGCA--GTGACCCAAGCCTC-CTTTGTCTTCATGCTTCAGCG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1918199 88 - 1938448 TGGAGCCACGTGGGGGTCGCACATGGC--TGTGGCAGACTCGTTA-GCCAGAGGCA--GTGACCCAAGCATC-ATTTGTCTTCATGCTTCAGGG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2526457 86 + 5252280 GGAAGTCAGACCTGGATCAGATGTGCC--G--GATGGGCTC---ACTGTGGGGGCAG-GTGACCCAGTCCTGAGTTTGTCTGCATGCTTCATGG i otoGar3.GL873658 C 0 I 9 s mm10.chr12 91414350 51 - 120129022 TGGAGCACTACCTGGATTG-------------------------G-------------ATGACCTAGTCCAT-ATTTTTTATCACTCTAC---- i mm10.chr12 I 43 C 0 s dasNov3.JH580157 556309 90 + 2232271 TGCAGTCATGCCTATATCAGGTATAACCATTTAAAGTAATT---G-TACTGAGGAAATGTAATCCAGTCCTGAGTTTTCCTTCATGCTTCATGG i dasNov3.JH580157 C 0 I 9 e micMur3.chr8 2637764 509 - 159902609 I e canFam3.chr17 2029705 572 + 64289059 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=340164.000000 s hg38.chr2_KI270769v1_alt 43024 48 + 120616 CTTTAG---------TTAAGCAAA-TCATTTAAATAAGAAAT-----ATTTAAGGTA-TTTTTT s panTro5.chr2A 3502819 48 + 111504155 CTTTAG---------TTAAGCGAA-TCATTTAAATAAGAAAT-----ATTTAAGGTA-TTTTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365541 48 + 114371477 CTTTAG---------TTAAGCGAA-TCATTTAAATAAGAAAT-----ATTTAAGGTA-TTTTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241833 47 + 637652 CTTTAG---------TTAACCGAA-TCATTTAAATAATAAAT-----ATTTAAGAT--TTTTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037270 48 + 81552678 CTTTAG---------TTAAGTGAA-TCATTTAAATAATAAAT-----ATTTAAGGTA-TTTTTT i nomLeu3.chr19 I 9 C 0 s rheMac8.chr13 3299926 44 + 108979918 CTTTGGAGAC-----TTAAGCGAA-TCATTT---------AT-----ATTTAAGGTATTTTTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5012687 44 - 111193037 CTTTGGAGAC-----TTAAGCGAA-TCATTT---------AT-----ATTTAAGGTATTTTTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406558 44 + 3644372 CTTTGGAGAC-----TTAAGCGAA-TCATTT---------AT-----ATTTAAGATATTTTTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3361793 42 - 10304083 CTTT-GAGAC-----TTAAGTGAA-TCATTT---------AT-----ATTTATGGTA-TTTTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444501 43 - 107702431 CTTTGGAGAC-----TTAAGTGAA-TCATTT---------AT-----ATTTAAGGTA-TTTTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 993360 43 + 1565135 CTTTGGAGAC-----TTAAGTGAA-TCATTT---------AT-----ATTTAAGGTA-TTTTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349919 43 - 13651311 CTTTGGAGAC-----TTAAGTGAA-TCATTT---------AT-----ATTTAAGGTA-TTTTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3444059 56 - 108792865 CTTTGGAGACTTCCGTT-AGTGAA-TTATTTAAATAATAAAT-----CTTTAAGGTA-TTCCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3097286 57 - 7082604 CTTTGGAGACTTGCGTTCAGTGAA-GTATTTCCATAATAAAT-----CTTTAAGGTA-TTTCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 583387 57 + 5243153 CTTTGGAGACTTTCATTCAGTGAA-TTATTTCAATAATAAAT-----CTTTAAGGTA-TTTCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1918287 57 - 1938448 CTTTGGAGACTTTCGTTCAGTGAA-TTATTTAAATAATAAAT-----CTTTAAGGTA-TTTCTT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2638273 48 - 159902609 CTTTAG---------TTGAACAAA-TCATTTAAATAACAAAT-----AGTTAAGATA-CTTTTT i micMur3.chr8 I 509 I 533 s otoGar3.GL873658 2526552 48 + 5252280 CTTCAG---------TGGAATGAG-TCATTTGAAGAATAAAT-----ATTGAAGATT-TTTTTT i otoGar3.GL873658 I 9 I 1 s mm10.chr12 91414401 39 - 120129022 CTCCAT---------CTAAAAAAATTTGATCAAATAATAAAT-----ATTTGA----------- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 556408 51 + 2232271 CTTTAG---------TTGAATTAA-CCATTTAAATAGTAAATATATAATCTAAGATA-ATTT-- i dasNov3.JH580157 I 9 C 0 e canFam3.chr17 2029705 572 + 64289059 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=325417.000000 s hg38.chr2_KI270769v1_alt 43072 29 + 120616 TCTCTTAGGACTTTCTCACTGTttttgtg s panTro5.chr2A 3502867 29 + 111504155 TCTCTTAGGACTTTCTCACTGTttttgtg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365589 29 + 114371477 TCTCTTAGGACTTTCTCACTGTttttgtg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241880 29 + 637652 TCTCTTAGGACTTTCTCACTGTttttgtg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037318 29 + 81552678 TCTCTTAGGACTTTCTCACTGTTTTTGTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299970 29 + 108979918 TCTCTTAGGACTTTCTCACTGTTTTTGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5012731 29 - 111193037 TCTCTTAGGACTTTCTCACTGTTTTTGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406602 29 + 3644372 TCTCTTAGGACTTTCTCACTGTTTTTGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3361835 29 - 10304083 TCTCTTAGGACTTTCTCACTGTTTTTGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444544 29 - 107702431 TCTCTTAGGACTTTCTCACTGTTTTTGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 993403 29 + 1565135 TCTCTTAGGACTTTCTCACTGTTTTTGTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3349962 29 - 13651311 TCTCTTAGGACTTTCTCACTGTTTTTGTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3444115 29 - 108792865 TCTCTTAGGACTTTCTCACTGTCTTTGTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3097343 29 - 7082604 TCTCTTAGGACTTTCTCACTGTCTTTGTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 583444 29 + 5243153 TCTCTTAGGACTTTCTCACTGTCTTTGTG i cebCap1.NW_016107454v1 C 0 I 21 s aotNan1.NW_018507213v1 1918344 29 - 1938448 TCTCTTAGGACTTTCTCACTGTCTTTGTG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2526601 26 + 5252280 TCTCTTAGGACTGCCTCAGCATATTT--- i otoGar3.GL873658 I 1 C 0 s mm10.chr12 91414440 7 - 120129022 --TCTAGGG-------------------- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 556459 25 + 2232271 TACTGTAGGATTTGCTAAGTATGTT---- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2638321 533 - 159902609 I e canFam3.chr17 2029705 572 + 64289059 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=12012.000000 s hg38.chr2_KI270769v1_alt 43101 2 + 120616 tt s panTro5.chr2A 3502896 2 + 111504155 tt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365618 2 + 114371477 tt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241909 2 + 637652 tt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037347 2 + 81552678 TT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3299999 2 + 108979918 TT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5012760 2 - 111193037 TT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406631 2 + 3644372 TT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3361864 2 - 10304083 TT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444573 2 - 107702431 TT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 993432 2 + 1565135 TT i manLeu1.NW_012104432v1 C 0 I 11 s colAng1.NW_012118821v1 3349991 2 - 13651311 TT i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2638321 533 - 159902609 I e mm10.chr12 91414447 0 - 120129022 C e canFam3.chr17 2029705 572 + 64289059 I e saiBol1.JH378218 3097372 0 - 7082604 C e proCoq1.NW_012151163v1 948444 2112 + 1238772 I e dasNov3.JH580157 556484 0 + 2232271 C e otoGar3.GL873658 2526627 0 + 5252280 C e cebCap1.NW_016107454v1 583473 21 + 5243153 I e aotNan1.NW_018507213v1 1918373 0 - 1938448 C e calJac3.chr14 3444144 0 - 108792865 C a score=4095.000000 s hg38.chr2_KI270769v1_alt 43103 1 + 120616 t s panTro5.chr2A 3502898 1 + 111504155 t i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365620 1 + 114371477 t i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241911 1 + 637652 t i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3300001 1 + 108979918 T i rheMac8.chr13 C 0 I 8 s macFas5.chr13 5012762 1 - 111193037 T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406633 1 + 3644372 T i macNem1.NW_012011978v1 C 0 I 7 s calJac3.chr14 3444144 1 - 108792865 T i calJac3.chr14 C 0 I 2 s saiBol1.JH378218 3097372 1 - 7082604 T i saiBol1.JH378218 C 0 I 2 s aotNan1.NW_018507213v1 1918373 1 - 1938448 T i aotNan1.NW_018507213v1 C 0 I 2 e micMur3.chr8 2638321 533 - 159902609 I e mm10.chr12 91414447 0 - 120129022 C e canFam3.chr17 2029705 572 + 64289059 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I e dasNov3.JH580157 556484 0 + 2232271 C e otoGar3.GL873658 2526627 0 + 5252280 C e cebCap1.NW_016107454v1 583473 21 + 5243153 I e colAng1.NW_012118821v1 3349993 0 - 13651311 C e manLeu1.NW_012104432v1 993434 11 + 1565135 I e chlSab2.chr14 3444575 0 - 107702431 C e cerAty1.NW_012000820v1 3361866 0 - 10304083 C e nomLeu3.chr19 3037349 0 + 81552678 C a score=-9303.000000 s hg38.chr2_KI270769v1_alt 43104 4 + 120616 ggtt s panTro5.chr2A 3502899 4 + 111504155 ggtt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365621 4 + 114371477 ggtt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241912 4 + 637652 gttt i gorGor5.CYUI01015435v1 C 0 C 0 s cerAty1.NW_012000820v1 3361866 1 - 10304083 ---G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444575 1 - 107702431 ---G i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3349993 1 - 13651311 ---G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3444147 2 - 108792865 GA-- i calJac3.chr14 I 2 I 2 s saiBol1.JH378218 3097375 2 - 7082604 GA-- i saiBol1.JH378218 I 2 I 2 s aotNan1.NW_018507213v1 1918376 2 - 1938448 GA-- i aotNan1.NW_018507213v1 I 2 I 18 e micMur3.chr8 2638321 533 - 159902609 I e mm10.chr12 91414447 0 - 120129022 C e canFam3.chr17 2029705 572 + 64289059 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I e dasNov3.JH580157 556484 0 + 2232271 C e otoGar3.GL873658 2526627 0 + 5252280 C e cebCap1.NW_016107454v1 583473 21 + 5243153 I e manLeu1.NW_012104432v1 993434 11 + 1565135 I e macNem1.NW_012011978v1 3406634 7 + 3644372 I e macFas5.chr13 5012763 0 - 111193037 C e rheMac8.chr13 3300002 8 + 108979918 I e nomLeu3.chr19 3037349 0 + 81552678 C a score=-1342.000000 s hg38.chr2_KI270769v1_alt 43108 6 + 120616 tgtttt s panTro5.chr2A 3502903 6 + 111504155 tgtttt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365625 6 + 114371477 tgtttt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241916 6 + 637652 tgtttt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037349 4 + 81552678 --TTGT i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5012763 3 - 111193037 ---TTA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3361867 6 - 10304083 TTTTTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444576 6 - 107702431 TTTTTA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3349994 6 - 13651311 TTTTTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3444151 5 - 108792865 -GTCCT i calJac3.chr14 I 2 I 11 s saiBol1.JH378218 3097379 5 - 7082604 -CTCTT i saiBol1.JH378218 I 2 I 11 s mm10.chr12 91414447 1 - 120129022 --T--- i mm10.chr12 C 0 C 0 e micMur3.chr8 2638321 533 - 159902609 I e canFam3.chr17 2029705 572 + 64289059 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I e dasNov3.JH580157 556484 0 + 2232271 C e otoGar3.GL873658 2526627 0 + 5252280 C e cebCap1.NW_016107454v1 583473 21 + 5243153 I e aotNan1.NW_018507213v1 1918378 18 - 1938448 I e manLeu1.NW_012104432v1 993434 11 + 1565135 I e macNem1.NW_012011978v1 3406634 7 + 3644372 I e rheMac8.chr13 3300002 8 + 108979918 I a score=1858.000000 s hg38.chr2_KI270769v1_alt 43114 2 + 120616 gt s panTro5.chr2A 3502909 2 + 111504155 gt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365631 2 + 114371477 gt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241922 2 + 637652 gt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037353 2 + 81552678 GT i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5012766 2 - 111193037 GT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3361873 2 - 10304083 GT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444582 2 - 107702431 GT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3350000 2 - 13651311 GT i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 583494 1 + 5243153 A- i cebCap1.NW_016107454v1 I 21 I 1 s mm10.chr12 91414448 2 - 120129022 AC i mm10.chr12 C 0 I 1 s dasNov3.JH580157 556484 1 + 2232271 -T i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2638321 533 - 159902609 I e canFam3.chr17 2029705 572 + 64289059 I e saiBol1.JH378218 3097384 11 - 7082604 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I e otoGar3.GL873658 2526627 0 + 5252280 C e aotNan1.NW_018507213v1 1918378 18 - 1938448 I e calJac3.chr14 3444156 11 - 108792865 I e manLeu1.NW_012104432v1 993434 11 + 1565135 I e macNem1.NW_012011978v1 3406634 7 + 3644372 I e rheMac8.chr13 3300002 8 + 108979918 I a score=-9630.000000 s hg38.chr2_KI270769v1_alt 43116 4 + 120616 -ttt--g s panTro5.chr2A 3502911 4 + 111504155 -ttt--g i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365633 4 + 114371477 -ttt--g i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241924 4 + 637652 -ttt--g i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037355 4 + 81552678 -TTT--G i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5012768 3 - 111193037 -GTT--- i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3361875 5 - 10304083 -GTTTT- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444584 3 - 107702431 -TTT--- i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3350002 3 - 13651311 -TTT--- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3444167 3 - 108792865 -GTT--- i calJac3.chr14 I 11 C 0 s saiBol1.JH378218 3097395 3 - 7082604 -GTT--- i saiBol1.JH378218 I 11 C 0 s cebCap1.NW_016107454v1 583496 3 + 5243153 -GTT--- i cebCap1.NW_016107454v1 I 1 C 0 s aotNan1.NW_018507213v1 1918396 3 - 1938448 -GTT--- i aotNan1.NW_018507213v1 I 18 C 0 s mm10.chr12 91414451 3 - 120129022 -TTT--- i mm10.chr12 I 1 C 0 s dasNov3.JH580157 556485 4 + 2232271 TTTT--- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2638321 533 - 159902609 I e canFam3.chr17 2029705 572 + 64289059 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I e otoGar3.GL873658 2526627 0 + 5252280 C e manLeu1.NW_012104432v1 993434 11 + 1565135 I e macNem1.NW_012011978v1 3406634 7 + 3644372 I e rheMac8.chr13 3300002 8 + 108979918 I a score=10920.000000 s hg38.chr2_KI270769v1_alt 43120 1 + 120616 t s panTro5.chr2A 3502915 1 + 111504155 t i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365637 1 + 114371477 t i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241928 1 + 637652 t i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037359 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s macNem1.NW_012011978v1 3406641 1 + 3644372 T i macNem1.NW_012011978v1 I 7 C 0 s chlSab2.chr14 3444587 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 993445 1 + 1565135 T i manLeu1.NW_012104432v1 I 11 C 0 s colAng1.NW_012118821v1 3350005 1 - 13651311 T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3444170 1 - 108792865 T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3097398 1 - 7082604 T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 583499 1 + 5243153 T i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1918399 1 - 1938448 T i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2526627 1 + 5252280 T i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91414454 1 - 120129022 T i mm10.chr12 C 0 C 0 s dasNov3.JH580157 556489 1 + 2232271 T i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2638321 533 - 159902609 I e canFam3.chr17 2029705 572 + 64289059 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I e cerAty1.NW_012000820v1 3361880 0 - 10304083 C e macFas5.chr13 5012771 0 - 111193037 C e rheMac8.chr13 3300002 8 + 108979918 I a score=111384.000000 s hg38.chr2_KI270769v1_alt 43121 11 + 120616 tttTAATTTAC s panTro5.chr2A 3502916 11 + 111504155 tttTAATTTAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365638 11 + 114371477 tttTAATTTAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241929 11 + 637652 tttTAATTTAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037360 11 + 81552678 TTTTAATTTAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3300010 11 + 108979918 TTTTAATTTAC i rheMac8.chr13 I 8 C 0 s macFas5.chr13 5012771 11 - 111193037 TTTTAATTTAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3406642 11 + 3644372 TTTTAATTTAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3361880 9 - 10304083 --TTAATTTAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3444588 11 - 107702431 TTTAAATTTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 993446 11 + 1565135 TTTTAATTTAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3350006 11 - 13651311 TTTTAATTTAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3444171 11 - 108792865 TTTTAATTGAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3097399 11 - 7082604 TTTAAATTGAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 583500 11 + 5243153 TTTTAATTGAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1918400 11 - 1938448 TTTTAATTGAT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2526628 11 + 5252280 TTTTAATTTAC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91414455 11 - 120129022 GTTTACATACC i mm10.chr12 C 0 C 0 s dasNov3.JH580157 556490 11 + 2232271 TTGAGATTTAC i dasNov3.JH580157 C 0 I 2 e micMur3.chr8 2638321 533 - 159902609 I e canFam3.chr17 2029705 572 + 64289059 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=3394470.000000 s hg38.chr2_KI270769v1_alt 43132 326 + 120616 AATGCCACATTAAAGTCAAAAATGACT-T------GTTGAGAGCTGT---------------AAGTGTGA----CAC--TGTGTGCTTGGCCGGGC----ACAGACACCAAG----CAG-TATCCCCAGCGTTGAGCAC-------AG-------GCAAACCAAAGGCA-----------------------------------TGGCTTAT--------------C-------------CTGCCTGCTGAGGT--CA------G--GATAGGGAAGGACACACCCAGACAGGCAGAGACAGT----GGG------------------AAATAAATACAAAGCAGTCTTCCCAGCAAAGCACTC-GCGTAACTTGAAAATGAGACGGAAATGCCAGGGCAAA---CTTGTAAGTTTGTGCCTTACTGAAG-------AAAG-CTGTTAAAATTGGGCAAAGGGTCTGGAAGGCTCCCGCAGAC------------ s panTro5.chr2A 3502927 326 + 111504155 AATGCCACATTAAAGTCAAAAATGACT-T------GTTGAGAGCTGT---------------AAGTGTGA----CAC--TGTGTGCTTGGCCGGGC----ACAGACACCAAG----CAG-TATCCCCAGCGTTGAGCAG-------AG-------GCAAACCAAAGGCA-----------------------------------TGGCTTAT--------------C-------------CTGCCTGCTGAGGT--CA------G--GATAGGGAAGGACACACCCAGACAGGCAGAGACAGT----GGG------------------AAATAAATACAAGGCAGTCTTCCCAGCAAAGCACTC-GCGTAACTTGAAAATGAGACGGAAATGCCAGGGCAAA---CTTGTAAGTTTGTGCCTTACTGAAG-------AAAG-CTGTTAAAATTGGGCAAAGGGTCTGGAAGGCTCCCGCAGAC------------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365649 326 + 114371477 AATGCCACATTAAAGTCAAAAATGACT-T------GTTGAGAGCTGT---------------AAGTGTGA----CAC--TGTGTGCTTGGCCGGGC----ACAGACACCAAG----CAG-TATCCCCAGCGTTGAGCAG-------AG-------GCAAACCAAAGGCA-----------------------------------TGGCTTAT--------------C-------------CTGCCTGCTGAGGT--CA------G--GATAGGGAAGGACACACCCAGACAGGCAGAGACAGT----GGG------------------AAATAAATACAAGGCAGTCTTCCCAGCAAAGCACTC-GCGTAACTTGAAAATGAGACGGAAATGCCAGGGCAAA---CTTGTAAGTTTGTGCCTTACTGAAG-------AAAG-CTGTTAAAATTGGGCAAAGGGTCTGGAAGGCTCCCGCAGAC------------ i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 241940 326 + 637652 AATGCCACATTAAAGTCAAAAATGACT-T------GTTGAGAGCTGT---------------AAGTGTGA----CAC--TGTGTGCTTGGCCGGGC----ACAGACACCAAG----CAG-TATCCCCAGCGTTGAGCAG-------AG-------GCAAACCAAAGGCA-----------------------------------TGGCTTAT--------------C-------------CTGCCTGCTGAGGT--CA------G--GATAGGGAAGGACACACCCAGACAGGCAGAGACAGT----GGG------------------AAATAAATACAAAGCAGTCTTCCCAGCAAAGCACTC-GCGTAACTTGAAAATGAGACGGAAATGCCAGGGCAAA---CTTGTAAGTTTGTGCCTTACTGAAG-------AAAG-CTGTTAAAATTGGGCAAAGGGTCTGGAAGGCTCCCGCAGAC------------ i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037371 333 + 81552678 AATGCCACATTAAAGTCCAAAATGACT-T------GTTGAGAGCTGT---------------GAGTCTGA----CAC--TGTGTGCTTGGCCGGGC----ACAGACACCAAG----CAG-TATCCCCCGCGATGAGCAG-------AG-------GGAAACCAAAGGTG-----------------------------------TGGCTTAT--------------C-------------CTACCTGCTGAGGT--CA------G--GATAGGGAAGGACACACCCAGACAGGCAGAGACAGT----GGG------------------AAATAAATACAAAGCAGTCTTCCCAGCAAAGCACAC-GCATACCTTGAAAATGAGACAGAAATGCCAGGGCAAA---CTTGTAAGTTTGTGCCTTATTGAAGAAAGGGTAAAG-CTGTTAAAATTGGGCAAAGGGTCTGGAAGGCTCCCGCAGCA------------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3300021 333 + 108979918 AATGCCACATTTAACTCAAAAATGACA-T------GTTGAGAGCTGT---------------AAGTGTGA----CAC--CGTGTGCTTGGCTGGGC----ACAGACACCAAG----CAG-TATCCCCACCGTTGAGCAG-------AG-------GGAAACCAAGCGCA-----------------------------------TGGCTTGT--------------C-------------CTGCCTGCTGAGGT--CA------G--GATAGGGAAGGACACACGCAGACATGCAGAGACAGA----GGG------------------AAATCAATACAAAGCAGTCTTCCCAGCAAAGTATTC-GCATAACTTGAAAATGAGACGGAAATGCCAGGGCAAA---CTTGTAAGTTTGTGCCTTTTTGAAGAAAGGGTAAAG-CTGTTAAAATTGGGCAAAGGGTTTGGAAGGCTGCCACAGCC------------ i rheMac8.chr13 C 0 I 1 s macFas5.chr13 5012782 333 - 111193037 AATGCCACATTTAACTCAAAAATGACA-T------GTTGAGAGCTGT---------------AAGTGTGA----CAC--CGTGTGCTTGGCTGGGC----ACAGACACCAAG----CAG-TATCCCCACCGTTGAGCAG-------AG-------GGAAACCAAGCGCA-----------------------------------TGGCTTGT--------------C-------------CTGCCTGCTGAGGT--CA------G--GATAGGGAAGGACACACGCAGACATGCAGAGACAGA----GGG------------------AAATCAATACAAAGCAGTCTTCCCAGCAAAGTATTC-GCATAACTTGAAAATGAGACGGAAATGCCAGGGCAAA---CTTGTAAGTTTGTGCCTTTTTGAAGAAAGGGTAAAG-CTGTTAAAATTGGGCAAAGGGTTTGGAAGGCTGCCACAGCC------------ i macFas5.chr13 C 0 I 1 s macNem1.NW_012011978v1 3406653 333 + 3644372 AATGCCACATTTAACTCAAAAATGACA-T------GTTGAGAGCTGT---------------AAGTGTGT----CAC--CGTGTGCTTGGCTGGGC----ACAGACACCAAG----CAG-TATCCCCACCGTTGAGCAG-------AG-------GGAAACCAAGCGCA-----------------------------------TGGCTTGT--------------C-------------CTGCCTGCTGAGGT--CA------G--GATAGGGAAGGACACACGCAGACATGCAGAGACAGA----GGG------------------AAATCAATACAAAGCAGTCTTCCCAGCAAAGTATTC-GCATAACTTGAAAATGAGACGGAAATGCCAGGGCAAA---CTTGTAAGTTTGTGCCTTTTTGAAGAAAGGGTAAAG-CTGTTAAAATTGGGCAAAGGGTTTGGAAGGCTGCCACAGCC------------ i macNem1.NW_012011978v1 C 0 I 1 s cerAty1.NW_012000820v1 3361889 333 - 10304083 AGTGCCACGTTTAACTCAAAAATGACT-T------GCTGAGAGCTGT---------------AAGTGTGA----CAC--TGTGTGCTTGGCAGGGC----ACAGACACCAAG----CAG-TATCCCCACCGTTGAGCAG-------AG-------GGAAACCAAGCGCA-----------------------------------TGGCTTGT--------------C-------------CTGCCTGCTGAGGT--CA------G--GATAGGGAAGGACACACGCAGACATGCAGAGACAGA----GGG------------------AAATCAATACAAAGCAGTCTTCCCAGCAAAGCATTC-GCATAACTTGAAAATGAGACGGAAATGCCAGGGCAAA---CTTGTAAGTTTGTGCCTGTTTGAAGAAAGGGTAAAG-CTGTTAAAATTGGGCAAAGGGTTTGGAAGGCTCCCACAGCC------------ i cerAty1.NW_012000820v1 C 0 I 1 s chlSab2.chr14 3444599 332 - 107702431 AATGCCACATTTAACTCAAAAATGACA-T------GTTGAGAGCTGT---------------AAGTGTGA----CAC--CGTGTGCTTGGCCGGGC----ACAGACACCAAG----CAG-TATCCTCACCGTTGAGCAG-------AG-------GGAAACCAAGCGCA-----------------------------------TGGCTTAT--------------C-------------CTGCCTGTTGAGGT--CA------G--GATAGGGAAGGACACACA-AGACATGCAGAGACAGA----GGG------------------AAATCAATACAAAGCAGTCTTCCCAGCAAAGCATTC-GCATAACTTGAAAATGAGATGGAAATGCCAGGGCAAA---CTTGTAAGTTTGTGCCTTTTTGAAGAAAGGGTAAAG-CTGTTAAAATTGGGCAAAGGGTTTGGAAGGCTCCCACAGCC------------ i chlSab2.chr14 C 0 I 1 s manLeu1.NW_012104432v1 993457 335 + 1565135 AGTGCCACATTTAACTCAAAAATGACT-T------GCTGAGAGCTGT---------------AAGTGTGA----CACTGTGTGTGCTTGGCAGGGC----ACAGACACCAAG----CAG-TATCCCCACCGTTGAGCAG-------AG-------GGAAACCAAGCGCA-----------------------------------TGGCTTGT--------------C-------------CTGCCTGCTGAGGT--CA------G--GATAGGGAAGGACACACGCAGACATGCAGAGACAGA----GGG------------------AAATCAATACAAAGCAGTCTTCCCAGCAAAGCATTC-GCATAACTTGAAAATGAGACGGAAATGCCAGGGCAAA---CTTGTAAGTTTGTGCCTTTTTGAAGAAAGGATAAAG-CTGTTAAAATTGGGCAAAGGGTTTGGAAGGCTGCCACAGCC------------ i manLeu1.NW_012104432v1 C 0 I 1163 s colAng1.NW_012118821v1 3350017 332 - 13651311 AATGCCACATTTAACTCAAAAATGACT-T------GTTGAGAGCTGT---------------AAGTGTGA----CAC--TGTGTGCTTGGCCGGGC----ACAGACACCAAG----CAG-TATCCCCACCGTTGAGCAG-------AG-------GGAAGCCAAGCGCA-----------------------------------TGGCTTAT--------------C-------------CTGCCTGCTGGggt--ca------g--gacaggaaaggacaca-gcagacatgcagagacagA----GGG------------------AAATAAATACAAAGCAGCCTTCCCAGCAACGCATTC-ACGTAACTTGAAAATGAGTCAGAAATGCCAGGGCAAA---CTTGTAAGTTTGTGCCTTTTTGAAGAAAGGGTAAAG-CTGTTAAAATTGGGTAAAGGGTTTGGAAGGTTTCCACAGCC------------ i colAng1.NW_012118821v1 C 0 I 1 s calJac3.chr14 3444182 331 - 108792865 AATGCCACATTAAAGTAAAAAATGACT-T------GTTGAGAGCTGT---------------CAGTGTGA----CAC--TGTGTGCCTGGCCGGGC----ACAGACACCAAG----CAG-TATCCCCAGCGTTGAGAAG-------AG-------AGGAGCCAAAGGCG-----------------------------------TGGCTTTT--------------C-------------CTGCCTGCTGAGAT--CA------G--GATAGGGAAGGGCACACCCAGACGGGCGGAGACAGA-----GG------------------AAATAAATAAAAAGCAGTCT-CCCAGCAAAGCATTC-ACATAACTTGAAAATGAGATGGAAACGCCAGGGCAAA---CTTTTAAGTTTGTGCCTTATTGAAGAAAGGGTACAG-CTGCTAAAATTGGGCAAAGGGTCTGGAAGGCACCTGCAGCC------------ i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3097410 330 - 7082604 AATGCCACATTAAAGTAAAAACTGACT-T------GTTGAGAGCTGT---------------CAGTGTGA----CAC--TGTGTGCCTGGCC-GGC----ACAGACACCAAG----CAG-TATCCCCAGCACTGAGCAG-------AG-------AGAAGCCAAAAGCA-----------------------------------TGGCTCTT--------------C-------------CTGCTTGCTGAAGT--CA------G--GATCGGGAAGGGCACACCCAGAC-AGCGGAGACAGA----GGG------------------AAAGAAATACACGGCAGTCTCCCCAGCAAAGCATTC-GCATAACTTGAAAATGAGATGGAAACGCCAGGGCAGA---CTTTTAAGTTTGTGCCTTATTGAAGAAAGGGTAGAG-CTGCTAAAATTGGGCCAAGGGTCTGGAA-GCACCTGCAGCC------------ i saiBol1.JH378218 C 0 I 1 s cebCap1.NW_016107454v1 583511 332 + 5243153 AATGCCACATTAAAGTAAAAAATGACT-T------GTTGAGAGCTGT---------------CAGTGTGA----CAC--TGTGTGCCTGGCCGGGC----ACAGACACCAAG----CAG-TATCCCCAGCGTTGAGCAG-------AG-------AGAAGCCAAAGGCA-----------------------------------TGGCGCTT--------------C-------------CTGCCTGCTGAGGT--CA------G--GAGAGGGAAGGGCACACCCAGACAGGCGGAGACAGG----GGG------------------AAATAAATACAAAGCAGTCT-CCCAGCAAAGCATTT-GCATAACTTGAAAATGAGATGGAAACGCCAGGGCAGA---CTTTTAAGTTTGTGCCTTATTGAAGAGAGGGTAGAG-CTACTAAAATTGGGCGAAGGGCCTGGAAGGCACCTGCAGCC------------ i cebCap1.NW_016107454v1 C 0 I 1 s aotNan1.NW_018507213v1 1918411 331 - 1938448 AATGCCACATTAAAGTCAAAAATGACT-T------GTTGAGAGCTGT---------------CAGTGTGA----CAC----TGTGCCTGGCCGGGC----ACAGACACCAAG----CAG-TATCCCCAGCATTGAGCAG-------AG-------AGAAGCCAAAGGCA-----------------------------------TGGCTTTT--------------C-------------CTGCCTGCTGAGGT--CA------G--GATAGAGAAGGACACACCCAGGCAGGCGGAGACAGA----GGA------------------AGATAAATACAAAGCAGTCTCCCCAGCAAAGCATTC-ACATAACTTGAAAATGAGATGGAAATGCCAGGGCAAA---CTTTTAAGCTTGTGCCTTATTGAAGAAAGGGTAGAG-CTGCTAAAATTGGGCAAAGGGTCTGGAAGGCACCTGCAGCC------------ i aotNan1.NW_018507213v1 C 0 I 1 s otoGar3.GL873658 2526639 354 + 5252280 AATGTAGCATTGACGTGGAAGGTGAC----------TTGAGGGTTGT---------------GAGTGGGA----CAC--TGTGTTCTTGGTAGGACACCTACGAGCACAGGA----CAG-TGGCCACAGCATTGAATAG-------TGAAG-GGAGGGGACCAAGGGCA-----------------------------------TGGTGTTTGCCCTC--------A-------------CTGCCTGCTAAGGT--CA------A--GGTGGAGAAAGG---ACCCAGACAAGTAGCGACAGA----GGGCCGTGTC------TAGGAAGACAAATACAGCACAGCAATCCCAGCAAAG-GTTT-TCCTAACTTGAATATAAGATGGAAATGCTGTGGCACA---CTTCTGAATTTAGGCCTCACTGAAGAAGGAGTGAAG-CTGTTAAAACTGGGGCCGGGGTACGGTGGGGTCCTTTGAGC------------ i otoGar3.GL873658 C 0 I 1 s mm10.chr12 91414466 327 - 120129022 AATGTAGCATT-AGGTGGAAGATGTCT-TCATAGCATTGAGAGTAGT---------------A----------------TGTGTCCTTG----AAC----ACTCTCACACAG----CGG-TATCTCAGCAGTAGAGCATCTC----AG-------GGAGACTGATGGAG-----------------------------------TGATCAGTATCCCCATCAGCTGC-------------CAACCTGCTCCTTC--CACCCCGGT--GATGGGGAGGAGGATACCAGGGAGGGGAGAGGGTGT--CCAGG------------------GTCTCCTGATGGATCAGTGAATCTAGTTAAGTGTCC-CTGTTAC--AAAAATGAAAGAGGAAGACTGAGACCAA---CCTGTGGGTCTGTGCCTTAGGGACG-------GAAG-AAGCTACAGTGGGAC------TCT-------CCCCACATGC------------ i mm10.chr12 C 0 C 0 s canFam3.chr17 2030277 339 + 64289059 AATGCAGTATTGAGGTTACAGGCAGTTCT------GTTGAGGATTGTTTTATG-------GCAAAGGTGAGGGGCAC--CATGTTCTTTGTCAGAC----ATAGTCATCCAGTGACCTG-TGTCCCAATAACCGAGCAGTGAAAGGAG-------AGGCACCAATGATG-----------------------------------GGACTCCT--------------C-------------CTG------GAGGTGGCA------G--AGAATGGAGAAAGACGAGCAGCAGAGCAGAGGGAGATGTCGAG------------------GGAAAAAGGCAGAGAGGTAATCCCCGCCGAGGGCCCAGCACAACTCGGAAGTGAGGCAGAAGTGCCCAGGCAAAGGTCCTTTAAATGTGTGC-----------------------TGTTAACACAGGGCAGAGGATCCAAGCAGTCCCTGTAGGT------------ i canFam3.chr17 I 572 I 4 s dasNov3.JH580157 556503 434 + 2232271 AACTCTGAGTTGAAGTTGAAGATAA---T------GTTGAGAAATGTTTCATAATGAATTACAAGTG-------AAC--TGCTCTCTTGGTCAGTC---TACATATACTGAC----CAATTATCCTGAATGTTGAATAG-------AGAAATGAAGGAAACCAAAGTCATATTGTCCCTCTGTCCTCCCCACCTACCTGCCCACTGCCCTGT--------------CCTCCACCCGTGGGCTGTTTACTAAAAT--CA------GAAGATAGGGAAAGACATACAAACAAAGGAAAAGGGGGA----AGG---TGTCAAAAAATAGAAAAAGAAATTCATATCAGTAACCACAGTAAAATGTCCTTCATAACTTCAAAACAAAATGGAAATGCTAAAACAAACTGCTTTTGAGTATGTACCTTACTGGAGAAAGAAGAAAGCCTGTTAAAGTTGGGCAAAGGGTAGAGCTGGATTTTTTTTCTTtttagcatgtt i dasNov3.JH580157 I 2 C 0 e micMur3.chr8 2638321 533 - 159902609 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=1760676.000000 s hg38.chr2_KI270769v1_alt 43458 208 + 120616 CCTTCTGTGAGGCAGGTGGCAC-AGGCGTCCAGGCA---TCATGTCACACCTGCTGCGGCCTCACGGCAAC----CTAGCTGCC-TCTGGGCCCTCCCGcc--ctagtttgca-gtgacacaga-aggctgcagagaggatgtgagccac--------ccagcacaaacagctagtgagtggcggaAGGT--------------------------------------------------------------------AGCATACCC---CACTGA-AGGGA-----AGCTGAAA--TGTCA--------------------TCTTTG-- s panTro5.chr2A 3503253 208 + 111504155 CCTTCTGTGAGGCAGGTGGCAC-AGGCGTCTAGGCA---TCATGTCACACCTGCTGCGGCTTCACGGCAAC----CTAGCTGCC-TCTGGGCCCTCCCGCC--CTAGTTTGCA-GTGACACAGA-AGGCTGCAGACAGGATGTGATCCAC--------CCAGCACAAACAGCTAGTGAGTGGCGGAAGGT--------------------------------------------------------------------AGCATACCC---CACTGA-AGGGA-----AGCTGAAA--TGTCA--------------------TCTTTG-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3365975 208 + 114371477 CCTTCTGTGAGGCAGGTGGCAC-AGGCGTCTAGGCA---TCATGTCACACCTGCTGCGGCCTCACGGCAAC----CTAGCTGCC-TCTGGGCCCTCCCGcc--ctagtttgca-gtgacacaga-aggctgcagacaggatgtgatccac--------ccagcacaagcagctagtgagtggcagaAGGT--------------------------------------------------------------------AGCATACCC---CACTGA-AGGGA-----AGCTGAAA--TGTCA--------------------TCTTTG-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 242266 208 + 637652 TCTTCTCTGAGGCAGGTGGCAC-AGGCGTCCAGGCA---TCATGTCACACCTGCTGCGGCCTCACGGCAAC----CTAGCTGCC-TCTGGGCCCTCCCGCC--CTAGTTTGCA-GTGACACAGA-AGGCTGCAGAGAGGATGTGATCCAC--------CCAGCACAAACAGCTAGTGAGTGGTGGAAGGT--------------------------------------------------------------------AGCATACCC---CACTGA-AGGGA-----AGCTGAAA--TGTCA--------------------TCTTTG-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037704 211 + 81552678 CGTTCTCTGAGGCAGATGGCAC-AGGCGTCCAGGCATCGTCATGTCACACCTGCTCCGGCCTCACGGCAAC----CTAGCTGCC-TCTGGGCCCTCCTGCC--CTCGTTTGCA-GTGACACAGA-AGGCTGCAGGGAGGATGTGATCCAC--------CCAGCACAAACAGCTAGTGAGTGGTGGAAGGT--------------------------------------------------------------------AGCATACCC---CACTGA-AGGGA-----AGCTGAAA--TGTCA--------------------TCTTTT-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3300355 212 + 108979918 CGTTCTCTGAGGCGGGTGGCAC-AGGCATCCAGGCATCCTCATGGCACACCTGCTCTGGCCTCACGGCCAC----CTAGCTGca-tctgggccctcacgcc--ctgatttgcaggtgacacaaa-aggctgcagagaggatgtgatccac--------ccagcacaaacagctagtgagtggcagaAGGT--------------------------------------------------------------------AGCATACCC---CACTGA-AGGGA-----AACTGAAA--TGTCA--------------------TCTTTT-- i rheMac8.chr13 I 1 C 0 s macFas5.chr13 5013116 212 - 111193037 CGTTCTCTGAGGCAGGTGGCAC-AGGCATCCAGGCATCCTCATGGCACACCTGCTCTGGCCTCACGGCCAC----CTAGCTGca-tctgggccctcacgcc--ctggtttgcaggtgacacaaa-aggctgcagagaggatgtgatccac--------ccagcacaaacagctagtgagtggcagaAGGT--------------------------------------------------------------------AGCATACCC---CACTGA-AGGGA-----AACTGAAA--TGTCA--------------------TCTTTT-- i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3406987 212 + 3644372 CGTTCTCTGAGGCAGGTGGCAC-AGGCATCCAGGCATCCTCATGGCACACCTGCTCTGGCCTCACGGCCAC----CTAGCTGCA-TCTGGGCCCTCACGcc--ctggtttgcaggtgacacaaa-aggctgcagagaggatgtgatccac--------ccagcacaaacagctagtgagtggcagaAGGT--------------------------------------------------------------------AGCATACCC---CACTGA-AGGGA-----AACTGAAA--TGTCA--------------------TCTTTT-- i macNem1.NW_012011978v1 I 1 C 0 s cerAty1.NW_012000820v1 3362223 209 - 10304083 CGTTCTCTGAGGCAGGTGGCAC-AGGCATCCAGGCATCCTCATGGCACACCTGCTCTGGCCTCACGGCCAC----CTAGCTGCA-TCTGGGCCCTCACGcc--ccagttcgcaggtgacacaaa-aggct---gagaggatgtgatccac--------ccagcacaaacagctagtgagtggcagaAGGT--------------------------------------------------------------------AGCATACCC---CACTGA-AGGGA-----AACTGAAA--TGTCA--------------------TCTTTT-- i cerAty1.NW_012000820v1 I 1 C 0 s chlSab2.chr14 3444932 212 - 107702431 CGTTCTCTGAGGCAGGTGGCAC-AGGCATCCAGGCATCCTCATGGCACACCTGCTCTGGCCTCATGGCCAC----CTAGCTGca-tctgggccctcacgcc--ctagttcgcaggtgacacaaa-aggctgcagagaggatgtgatccac--------ccagcacaaacagctagtgagtggcagaAGGT--------------------------------------------------------------------AGCATACCC---CACTGA-AGGGA-----AACTGAAA--TGTCA--------------------TCTTTT-- i chlSab2.chr14 I 1 C 0 s manLeu1.NW_012104432v1 994955 212 + 1565135 CGTTCTCTGAGGCAGGTGGCAC-AGGCATCCAGGCATCCTCATGGCACACCTGCTCTGGCCTCACGGCCAC----CCAGCTGCA-TCTGGGCCCTCACGcc--ccagtgcgcaggtgacacaaa-aggctgcagagaggatgtgatccac--------ccagcacaaacagctagtgagtggcagaAGGT--------------------------------------------------------------------AGCATACCC---CACTGA-AGGGA-----AACTGAAA--TGTCA--------------------TCTTTT-- i manLeu1.NW_012104432v1 I 1163 C 0 s colAng1.NW_012118821v1 3350350 208 - 13651311 CGTTCTCTGAGGCAGGTGGCAC-AGGCATCCAGGCATCCTCATGTCACACCCGCTCTGGCCTCATGGCAAC----CTAGCTGca-tctgggccctcacgcc--ctagtttgcaggtgactcaaa-aggctgcagagaggatgtgatccac--------ccagc----acagctagtgagtggcagaAGGT--------------------------------------------------------------------AGCATACCC---CACTGA-AGGGA-----AACTGAAA--TGTCG--------------------TCTTTT-- i colAng1.NW_012118821v1 I 1 C 0 s calJac3.chr14 3444514 198 - 108792865 CATTCTCTGAGGCAGGTGGCAC-AAGCATCCAGGCACCGTCATGTCACACCTGCTCTGGCCTCATAGCAAC----CTAGCTGCA-TCCAGGTCCTCCCGCC--CTAGTTTGCAGGTGACACA---------------------GGTCCACCATATCCACCAGCACAAACAGCTAATGAGTGGCGGCAGGT--------------------------------------------------------------------GGAGTGCCC---CACCCG-AGGGA-----AGCTGAAA--TGCCA--------------------TCTT---- i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3097741 219 - 7082604 TATTCTCTGAGGCAGGTGCCAC-AGGCATCCAGACATCGTCACGTCACTCCTGCTCTGGCCTCACAGCAAC----CTAGCTGCA-TCCAGGGCCTCCCGCA--CTAGTTTGCAGGTGACACAGG-AGGCTGCAGAGGGGCTGTGGTCCACCACGTCCACCAGCACAGACAGCTACTGAGTGGCGGCAGGG--------------------------------------------------------------------GGTGTACTC---CACCCA-AGGGA-----AGCTGAAA--TGCCA--------------------TCTTT--- i saiBol1.JH378218 I 1 C 0 s cebCap1.NW_016107454v1 583844 218 + 5243153 CATTCTCTGAGGCAGATGGCAC-AGACAT-CAGGCATCGACACATCACACCTGCTCTGGCCTCATAGCAAC----CTAGCTGCA-TCCAGGGCCTCCCGCC--CTCGTTTACAGGTGACACGGG-AGGCTGCAGAGAGGCCGTGGTCCACCATGTCCACCCGCACAGACAGCTAGTGAGTGGCGGCAGGG--------------------------------------------------------------------GGTGCACCC---CACCCA-AGGGA-----AGCTGAAA--TGCCG--------------------TCTTT--- i cebCap1.NW_016107454v1 I 1 C 0 s aotNan1.NW_018507213v1 1918743 217 - 1938448 CATTCTCTGAGGCAGGTGGCAC-AGGCATCCAGGCATCATCACGTCACACCTGCTCTGGCCTC--AGCAAC----CTAGCTGCA-TCCAGTGCCTCCCGCC--CTAGTTTGCAGGTGACACAGG-AGGCTGCAGAGAGGCTGTGGTCCACCATATCCACCAGCACAAACAGCTAGTGAGTGGCGGCAGGT--------------------------------------------------------------------GATGTACCC---CACCCA-AGGGA-----AGCTGAAA--TGCCA--------------------TCTTT--- i aotNan1.NW_018507213v1 I 1 C 0 s otoGar3.GL873658 2526994 211 + 5252280 CACTCTGTGTGCCAGGCAGCAC-AGTCTTCC-------------CCCTGCCCGCTCAGGATTCACGGCAGC----CTGGCC-CG-TCCGAGTCTTCCTTC-------TTTGCA-------CAGA-A-GCTCCTGACACGCCACAGTCTGC--------CCAGCACAGACAGCTGGCGAGTGGCAGGAAGC--------------------------------------------------------------------GGCCTGCCCGCTGACCCG-GAGGagccacagccgcag--ccccagccccagccccGCGGCTCCCTCTC---- i otoGar3.GL873658 I 1 C 0 s mm10.chr12 91414793 142 - 120129022 ---TCTCTGTTGCCAGTGGCGA-A--CATACATATA----------------GTGTTGGGTACATGGCAGCAAGTCCAGCTGTG-CCTCTGCCCC-------------------ACGCTGCCAG-GAGCTG---------------CCTC--------TCTCCGAGAGCAGC-AGTGA---------------------------------------------------------------------------------------CC---CATGGA-GGTCA-----CACCCATG--CGGC---------------------TCTCTG-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2030620 152 + 64289059 CCTGCT-----------------GGACGCCTGCGCA----------------GCTG-GGCCTGTCGGCACC----ATGGCCATGTTCCAGAACCCCACCCC--A-------------------------TCCCAGGAAGACACGGTTCGC--------CCAGCACACACAGCAGATGAGAG-----ATGT--------------------------------------------------------------------TCCATCTCC---TGTACACAGAGG-----AGTTAAAG--TTCCT--------------------CCGCTT-- i canFam3.chr17 I 4 I 1 s dasNov3.JH580157 556937 277 + 2232271 --ctctctgctagactttgcactaggcatttatgtg---------taatctcactcaggcctcacaacgat----ttggccaaa-tttaagtattcttaccaactctttcgcagatgaagaaactaagattcaaagctgacataatctac--------ccagcacaaatagttagcacgtagcagaaagtccaggCTATTTCTACCTATGCCATGTTATAAAAAGGTTCTAAGCTTATCATAAAATAAAATAAAAAAGGGCATAGCC---CGCTAA-CATTA-----AGCTAAAGTTTACCC--------------------CCTTTTCG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2638321 533 - 159902609 I e proCoq1.NW_012151163v1 948444 2112 + 1238772 I a score=17849.000000 s hg38.chr2_KI270769v1_alt 43666 2 + 120616 TT s panTro5.chr2A 3503461 2 + 111504155 TT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3366183 2 + 114371477 TT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 242474 2 + 637652 TT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037915 2 + 81552678 TT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3300567 2 + 108979918 TT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5013328 2 - 111193037 TT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3407199 2 + 3644372 TT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3362432 2 - 10304083 TT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3445144 2 - 107702431 TT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 995167 2 + 1565135 TT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3350558 2 - 13651311 TC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3097960 2 - 7082604 TT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 584062 2 + 5243153 TT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1918960 2 - 1938448 TT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 950556 2 + 1238772 TT i proCoq1.NW_012151163v1 I 2112 C 0 s otoGar3.GL873658 2527205 2 + 5252280 TC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2030773 1 + 64289059 T- i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 557214 2 + 2232271 TT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2638321 533 - 159902609 I e mm10.chr12 91414935 0 - 120129022 C e calJac3.chr14 3444712 0 - 108792865 C a score=4064619.000000 s hg38.chr2_KI270769v1_alt 43668 271 + 120616 CCCTTTCATTTTTCACTGCCCAGCACCAAGGCCCGGGCAATTCCTGGCACATTTCTC-----TTT------T-CTATAGTGGCAGCACGGATTTTCAGCACAACAAGGGACGGTCTGAAATAAATTTT--GTAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATGAATGAGAACACTTTTACAGTATTTATACCAACCTAGATTTTGGCAGGTCACAACTATACAT-----GGGAATCTTCCGGAAAAATAGATCCACTAGGAATTGTTTTTCCTTACAGATTTTGACT s panTro5.chr2A 3503463 271 + 111504155 CCCTTTCACTTTTCACTGCCCAGCACCAAGGCCCGGGCAATTCCTGGCACATTTCTC-----TTT------T-CTATAGTGGCAGCACGGATTTTCAGCACAACAAGGGACAGTCTGAAATAAATTTT--GTAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATGAATGAGAACACTTCTACAGTATTTATACCAACCTAGATTTTGGCAGGTCACAACTATACGT-----GGGAATCTTCCGGAAAAATAGATCCACTAGGAATTGTTTTTCCTTACAGATTTTGACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3366185 270 + 114371477 CCCTTTCACTTTTCACTGCCCAGCACCAAGGCCCGGGCAATTCCTGGCACATTTCTC-----TTT------T-CTATAGTGGCAGCACAGATTTTCAGCACAACAAGGGACAGTCTGAAATAAATTTT--GTAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATGAATGAGAACACTTCTACAGTATTTATACCAACCTAGA-TTTGGCAGGTCACAACTATACAT-----GGGAATCTTCCGGAAAAATAGATCCACTAGGAATTGTTTTTCCTTACAGACTTTGACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 242476 271 + 637652 CCCTTTCATTGTTCACTGCCTAGCACCAAGGCCCGGGCAATTCCTGGCACATTTCTC-----TTT------T-CTATAGTGGCAGCACAGATTTTCAGCACAACAAGGGACAGTCTGAAATAAATTTT--GTAGGAGCATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATGAATGAGAACACTTCTACAGTATTTATACCAACCTAGATTTTGGCAGGTCACAACTATACAT-----GGGAATCTTCCGGAAAAATAGATCCACTAGGAATTGTTTTTCCTTAAAGATTTTGACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3037917 268 + 81552678 CCCTTTCATTTTTCATTGCCCAGCACCAAGGCCCGGGCAATTCCTGGCACATTTCTC-----TTT------T-CTAGAGTAGCAGTACGGATTTTCAGC---ACAAGGGACGGTCTGAAATAAATTTT--GTAGGAATATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCCAAATGATTAATGAGAACACTTCTACAGTATTTATACCAACCTAGATTTTGGCAGGTCACAACTATACAT-----GGCAATCTTCCAGAAAAACAGATCCACTGGAAATTGTTTTTCCTTACAGATTTTGACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3300569 271 + 108979918 CCCTTTCATTTTTCACTGCCCAGCACCAAGGCCCGGGCAATTCCTGGCACATTTCTC-----TTT------T-CTATAGTAGCAGTACGGATTTTCAGCACAGCAAGGGACAGTCTGAAATAAATTTT--GTAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATTAATGAGAACACTTCTACAGTATTTATACCAACCTAGATTTTGGCAGGTCACAACTATACAT-----GGGAATCTTCCAGAAAAATAGATCCACTAGGAATTGTTTTTCCTTACAGATTTTGACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5013330 271 - 111193037 CCCTTTCATTTTTCACTGCCCAGCACCAAGGCCTGGGCAATTCCTGGCACATTTCTC-----TTT------T-CTATAGTAGCAGTACGGATTTTCAGCACAGCAAGGGACAGTCTGAAATAAATTTT--GTAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATTAATGAGAACACTTCTACAGTATTTATACCAACCTAGATTTTGGCAGGTCACAACTATACAT-----GGGAATCTTCCAGAAAAATAGATCCACTAGGAATTGTTTTTCCTTACAGATTTTGACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3407201 271 + 3644372 CCCTTTCATTTTTCACTGCCCAGCACCAAGGCCCGGGCAATTCCTGGCACATTTCTC-----TTT------T-CTATAGTAGCAGTACGGATTTTCAGCACAGCAAGGGACAGTCTGAAATAAATTTT--GTAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATTAATGAGAACACTTCTACAGTATTTATACCAACCTAGATTTTGGCAGGTCACAACTATACAT-----GGGAATCTTCCAGAAAAATAGATCCACTAGGAATTGTTTTTCCTTACAGATTTTGAGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3362434 267 - 10304083 CCCTTTCATTTTTCACTGCCCAGCACCAAGGCCCGGGCAATTCCTGGCACATTTCTC-----TTT------T-CTATAGTAGCAGAACGGATTTTCAGCACAACAAGGGACAGTCTGAAATAAATTTT--GTAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATTAATGAGAACACTTCTACAG----TATACCAACCTAGATTTTGGCAGGTCACAACTATACAT-----GGGAATCTTCCAGAAAAATAGATCCACTAGGAATTGTTTTTCCTTACAGATTTTGACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3445146 271 - 107702431 CCCTTTCATTTTTCACTGCCCAGCACCAAGGCCCGGGCAATTCCTGGCACATTTCTC-----TTT------T-CTATAGTAACAGTATGGATTTTCAGCACAGCAAGGGACAGTCTGAAATAAATTTT--GTAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATTAATGAGAACACTTCTACAGTATTTATACCAACCTAGATTTTGGCAGGTCACAACTATACAT-----GGGAATCTTCCAGAAAAATAAATCCACTAGGAATTGTTTTTCCTTACAGATTTTGACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 995169 271 + 1565135 CCCTTTCATTTTTCACTGCCCAGCACCAAGGCCTGGGCGATTCCTGGCACATTTCTC-----TTT------T-CTATAGTAGCAGTACGGATTTTCAGCACAACAAGGGACAGTCTGAAATAAATTTT--GTAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATTAATGAGAACACTTCTACAGTATTTATACCAACCTAGATTTTGGCAGGTCACAACTATACAT-----GGGAATCTTCCAGAAAAATAGATCCACTAGGAATTGTTTTTCCTTACAGATTTTGACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3350560 276 - 13651311 CCCTTTCATTTTTCACTGCCCACCACCAAGGCCTGGGCAATTCCTGGCACATTTCTC-----TTT------T-CTATAGTAGTAGTACGGATTTTCAGCACAACAAGGGACAGTCTGAAATAAATTTT--GTAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATTAATGAGAACACTTCTACAGTATTTATACCAACCTAGATTTTGGCAGGTCACAACTATACATTTTTCTGGAATCTTCCAGAAAAATAGATCCACTAGGAATTGTTTTTCCTCACAGATTTTGACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3444712 268 - 108792865 ---TTTCATTTCTCACTGCCCAGCACCAAGGCCCGGGCAAATCCTGGCACATTTCTC-----TTT------T-CTTCAGTAGCAGTATGGATTTTCAGCATAACAGGGGACTGTCTGATACAAATTTT--GTAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATAAATGAGAACCCTTCTACAGTATTTATACCAACCTAGATTTTGGCAGGTCACAGCTCTACAT-----GGGAATCTTCCAGAAAAATAGACCCACTAGGAATTGTTTTTCCTCACAGATTTTGACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3097962 271 - 7082604 GCCTTTCATTTCTCACTGCCCAGTACCAAGGCCCGGGCAATTCCTGGCACATTTCTC-----TTT------T-CTATCGTAGTAGTACGAATTTTCAGCGTAACAGGGGGCTGTCTGATACGAATTTT--GTAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTACATGATAAATGAGAACCCTTCTACAGTATTTATACCAGCCTAGAGTTTGGCAGGTCACAACTCTACGT-----GGGAATCTTACAGAAAAATAGATCCACTAGGAATTGTTTTTCCTCACAAATTTTGACT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 584064 270 + 5243153 CCCTTTCATTTCTCACTGCCCAGCACCAAGGCTCGGGCAATTCCTGGCACATTTCTC-----TTT------T-CTATAGTAGCAGTGTGGATTTTCAACATAACA-GGGACTGTCTGATACGAATTTT--CTAGGAGTATTT-------------------------------------------------------------------------------TTATTTAATGTTTTCTACATGATAAATGAGAACCCTTCTACAGTATTTATACCAACCTAGATTTTGGCAGGTCACAACTCTACAT-----GGAAATCTTCCAGAAAAATAGATCCACTAGTAATTGCTTTTCCTCACAGATTTTGACT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1918962 271 - 1938448 CCCTTTCATTTCTCACTGCCCAGCACCAAGGCCCAGGCAATTCCTGGCACATTTCTC-----TTT------T-CTATAGTAGCAGTATGGATTTTCAGCATAACAGGGAACTGTCTGATATGAATTTT--GTAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGTTAAATGAAAACCCTTCTACAGTATTGATATCAACCTAGATTTTGGCAGGTCACAACTCTACAT-----GGGAATCTTCCAGAAAAATAGATCCACTAGGAATTGTTTTTCCTCACAGATTTTGACT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2638854 266 - 159902609 CCCCTTCATTTTTCTCTGCCCAGCGCCGAGGCCTGGGCGATTCCCAGCACGTTTCTC-----TCC------T-CTGTAGTGGCAGTGTGGATCTCCGGCACGACAGGGGA----CTAAGATAAATTTT--GCAGGAGTATTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTGAATGATTAATGAGAACGCTTCTGCAGTATTTATAGCAACCTAGATTTCAGCCGGTCACAAGGATGCGT-----GGGAATA-TCCAGAGAAACAGATCCACTAGGAATTCTTTTTCTTTACAGATTTTGACT i micMur3.chr8 I 533 C 0 s proCoq1.NW_012151163v1 950558 269 + 1238772 CCCTTTCATCTTTCGCCGCCCGGCACCGAGGCCT-GGTGATTTCCGGCACGTTCCTC-----TCC------T-CTGTGGTGGCAGTGTGGACCTTCAGCACCACAGGGGACTGTCTAAAATAAATTTT--GTAGGAGTGTTT-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATTAATGAGAGCACTTCTACAGTATTTACAGCAACCTAGATTTCAGCCGGTCACAGGGGTACGT-----GGGAATA-TCCAGAGAAGCAGATCCACTAGGAACTCTTTTTCCTTACAGATTTTGACT i proCoq1.NW_012151163v1 C 0 I 1879 s otoGar3.GL873658 2527207 264 + 5252280 -CCCTCTCCTTGTCACTGCCCAGCACTGAGGCCT-GGCAGTTT-CGACACATT-CTC-----TCC------T-CTGTAGTGGCAGTATGGATTTTCAGCACGACAGGGGACTGTCTAAAATAAATTTT--GTAGGAGTATTC-------------------------------------------------------------------------------TCATTTAATGTTTTCTAAATGATTAATGAGAACGCTTCTACAGTATTTATAACAGCCCGGCTCTTGGCAGGTCATGGCTGCACGT-----GGGAATC-TTCCAGGAG--AGATCCAGGAGGAATTATTGTTCCTTGCAGATATTGCCT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91414935 345 - 120129022 --CTTTCAGTTTTCAGTGCACA-CACCAAGGCCCAGCAGATTTCTAGCACATTCCTCCCTGACTT------T-CCACAATGGTGGTGTAGCTCTTCAACACTGCAGGGGACAGTCTGAAATAATCTTCAAGTAGTTGTTTTTATTTAATGTGTtctctctctctctctctctctctctctctctctctctctctctctTCACCACCACCACCACCCCAGCCTCATTTAATATTTTCTAAACAACTAATGAGAATACTTCCTCAGTATTCATGTCAACCTATTTTTAGACAGGCCCCGACTGTACAT-----GGGAGACACACACACACAGAGG---ACTAGG------CTCTTCTTACAGATTTTGACT i mm10.chr12 C 0 C 0 s canFam3.chr17 2030774 216 + 64289059 ----CTCTGTTTTCTGTGCCCAGCA-TGAAGCCTGCTTCACTTCTGGTGCTTTCCTC-----TCG------GACTCTGCTGGCAGCGTGTGCTCACTGCACTGCGGGGACC-------------------GTAGG------------------------------------------------------------------------------------------------------AAATGATTAATGAGAATGCCTCTAC-----------CCACCTAGATTTAGGTAGGTCATGACTCTATGT-----GGGAATCTTCCAGAAAAACAGACCGTCTGGGAATTATCCGTCCTTGCAGACTTTGACT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 557216 246 + 2232271 -TCTTTCCATTTTTACTGCATAGCACCAAGGCCTAATTAATTTCTGGTGCATTTCTC-----TTTGGGTTCT-CCGTGGTGGCAGTATGGATTTGCAATGCTATAGGGTACTGCCTAAAATAAATTTT--TCAGG-GCATTT-------------------------------------------------------------------------------TCATTGAAT-TTTTCTAAATAAT---TGAGACCACTTCTACAGTATTTATACCAGCCTAGA-----------------------------AGGAATCTTTCAGAAAAAGAAATCCACTGGAAATTA-TTTTCCTTACAGAATTTGACT i dasNov3.JH580157 C 0 C 0 a score=4905.000000 s hg38.chr2_KI270769v1_alt 43939 1 + 120616 A s panTro5.chr2A 3503734 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3366455 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 242747 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3038185 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3300840 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5013601 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3407472 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3362701 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3445417 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 995440 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3350836 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3444980 1 - 108792865 C i calJac3.chr14 C 0 C 0 s aotNan1.NW_018507213v1 1919233 1 - 1938448 C i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2639120 1 - 159902609 A i micMur3.chr8 C 0 I 433 s otoGar3.GL873658 2527471 1 + 5252280 G i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91415280 1 - 120129022 G i mm10.chr12 C 0 C 0 s canFam3.chr17 2030990 1 + 64289059 A i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 557462 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e saiBol1.JH378218 3098233 0 - 7082604 C e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e cebCap1.NW_016107454v1 584334 0 + 5243153 C a score=20862.000000 s hg38.chr2_KI270769v1_alt 43940 2 + 120616 GC-------- s panTro5.chr2A 3503735 2 + 111504155 GC-------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3366456 2 + 114371477 GC-------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 242748 2 + 637652 GC-------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3038186 2 + 81552678 GC-------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3300841 2 + 108979918 GC-------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5013602 2 - 111193037 GC-------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3407473 2 + 3644372 GC-------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3362702 2 - 10304083 GC-------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3445418 2 - 107702431 GC-------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 995441 2 + 1565135 GC-------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3350837 2 - 13651311 GC-------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3444981 2 - 108792865 GC-------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3098233 2 - 7082604 GT-------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 584334 2 + 5243153 GC-------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1919234 2 - 1938448 AC-------- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2527472 2 + 5252280 GC-------- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91415281 2 - 120129022 GC-------- i mm10.chr12 C 0 I 1115 s canFam3.chr17 2030991 2 + 64289059 GC-------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 557463 10 + 2232271 GCCCCATCCC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2639121 433 - 159902609 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=2227936.000000 s hg38.chr2_KI270769v1_alt 43942 206 + 120616 TTCTCC-----------------------TTTTTTTTT--CCTTTCC-AATGCT--CTTTCTCCCTGCAGGAGAGAGATGGGCCTCAGGGCTGGTGTGGAAGC-CTTGCATATTTTATCTCGCTTGACAACCACCCTCAGCATGGAGGATTTCAGTGAGATTCCCAGGGTAGCTCTTCAGAGAC--AGG--GGCTAGGTTTGGCC--ACTGAGAGAATCAGCTTAAAGGTATTTTTATGTG s panTro5.chr2A 3503737 208 + 111504155 TTCTCC-----------------------TTTTTTTTTTTCCTTTCC-AATGCT--CTTTCTCCCTGCAGGAGAGAGACGGGCCTCAGGGCTGGCGTGGAAGC-CTTGCATATTTTATCTCGCTTGACAACCACCCTTAGCATGGAGGATTTCAGTGAGATTCCCAGGGTAGCTCTTCAGAGAC--AGG--GGCTAGGTTTGGCC--ACTGAGAGAATCAGCTTAAAGGTATTTTTATGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3366458 208 + 114371477 TTCTCC-----------------------TTTTTTTTTTTCCTTTCC-AATGCT--CTTTCTCCCTGCAGGAGAGAGACGGGCCTCAGGGCTGGCGTGGAAGC-CTTGCATATTTTATCTCGCTTGACAACCACCCTCAGCATGGAGGATTTCAGTGAGATTCCCAGGGTAGCTCTTCAGAGAC--AGG--GGCTAGGTTTGGCC--ACTGAGAGAATCAGCTTAAAGGTATTTTTATGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 242750 205 + 637652 TTCTCC-----------------------TTTTTTTT---CCTTTCC-AATGCT--CTTTCTCCCTGCAGGAGAGAGACAGGCCTCAGGGCTGGTGTGGAAGC-CTTGCATATTTTATCTAGCTTGACAACCACCCTCAGCATGGAGGATTTCAGTGAGATTCCCAGGGTAGCTCTTCAGAGAT--GGG--GGCTAGGTTTGGCC--GCTGAGAGAATCAGCTTAAAGGTATTTTTATGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3038188 207 + 81552678 TTCTCC-----------------------TTTTTTTTTT-CCTTTCC-AGTGCT--CTTTCTCCCTGCAGGAGAGAGACAGGCCTCAGGGCTGGTGTGGAAGC-CTTGCATATTTTATCTAGCTTGACAACCACCCTCAGCATTTAGGATTTCAGTGAGATTCCCAGGGTAGCTCTTCAGAGAC--AGG--GGCTAGGTTTGGCC--ACTGAGAGAATCAGCTTAAAGGTATTTTTATGTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3300843 231 + 108979918 TTCTCCtttttttttttttttttttttttttttttcttttcttttCC-AATGCT--CTTTCTCCCTGCAGGAGAAAGATAGGCCTCAGGGCTGGTGTGGAAGC-CTTGCATATTTTATCTCACTTGACAACCACCCTCAGCATGGAGGATTTCACTGGGATTCCCAGGGTGGCTCTTCAGAGAC--AGG--GGCTAGGTTTGGTG--ACTGAGAGAATCAGCTTAAAGGTATTTTTATGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5013604 231 - 111193037 TTCTCCttttttttttttttttttttttttttttttttttcttttCC-AATGCT--CTTTCTCCCTGCAGGAGAAAGATAGGCCTCAGGGCTGGTGTGGAAGC-CTTGCATATTTTATCTCACTTGACAACCACCCTCAGCATGGAGGATTTCACTGGGATTCCCAGGGTGGCTCTTCAGAGAC--AGG--GGCTAGGTTTGGTG--ACTGAGAGAATCAGCTTAAAGGTATTTTTATGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3407475 211 + 3644372 TTCTCC--------------------ttttttttttttttcttttCC-AATGCT--CTTTCTCCCTGCAGGAGAAAGATAGGCCTCAGGGCTGGTGTGGAAGC-CTTGCATATTTTATCTCACTTGACAACTACCCTCAGCATGGAGGATTTCACTGGGATTCCCAGGGTGGCTTTTCAGAGAC--AGG--GGCTAGGTTTGGTG--ACTGAGAGAATCAGCTTAAAGGTATTTTTATGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3362704 220 - 10304083 TTCTCC-----------tttttttttttttttttttttttCCTTTCC-AATGCT--CTTTCTCCCTGCAGGAGAAAGATAGGCCTCAGGGCTGGTGTGGAAGC-CTTGCATATTTTATCTCACTTGACAACCACCCTCAGCATGGAGGATTTCACTGGGATTCCCAGGGTGGCTCTTCAGAGAC--AGG--GGCTAGGTTTGGTG--ACTGAGAGAATCAGCTTAAAGGTATTTTTATGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3445420 218 - 107702431 TTCTCC-------------tttttttttttttttttttttCCTTTCC-AATGCT--CTTTCTCCCTGCAGGAGAAAGATAGGCCTCAGGGCTGGTGTGGAGGC-CTTGCATATTTTATCTCACTTGACAACCACCCTCAGCATGGAGGATTTCACTGAGATTCCCAGGGTGGCTCTTCAGAGAC--AGG--GGCTAGGTTTGGTG--ACTGAGAGAATCAGCTTAAAGGTATCTTTATGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 995443 210 + 1565135 TTCTCC---------------------TTTTTTTTTTTTTCCTTTCC-AATGCT--CTTTCTCCCTGCAGGAGAAAGATAGGCCTCAGGGCTGGTGTGGAAGC-CTTGCATATTTTATCTCACTTGACAACCACCCTCAGCATGGAGGATTTCACTGGGATTCCCAGGGTGGCTCTTCAGAGAC--AGG--GGCTAGGTTTGGTG--ACTGAGAGAATCAGCTTAAAGGTATTTTTATGTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3350839 205 - 13651311 TTCTCC----------------------TTTTTTTTTTTTCCTTTCC-AATGCT--CTTTCTCCCTGCAGGAGAA----AGGCCTCAGGGCTGGTGTGGAAGC-CTTGCATATTTTATCTCACTTGACAACCACCCTCAGCATGGAGGATTTCACTGAGATTCCCAGGGTGGCTCTTCAGAGAC--AGG--GGCTAGGTTTGGTG--ACTGAGAGAATCAGCTTAAAGGTATTTTTATGTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3444983 194 - 108792865 CTCTCC--------------------------TTTTTTCTCCTTTCC-GGTATT--TTTTCTCCCTGCAGGAGAGAGACAGGCCTCAGAGCTGCTGTGGAAGTTCTTGCATATTTCATCTCACTTGACATGAA------------AGGATTTTACTGAGGTTCCCAAGTTCGCTCTTCAGAGGC--AGG--GGCTAGGTCTGGTC--ACTGAGAGAATCAGCTTAAGGGTGTTTTTATGTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3098235 205 - 7082604 CTCTCC--------------------------TATTTTTTCCTTTCC-AATGTT--CTTTCTCCCTGCAGGAGAGAGACAGGCCTCAGGGCTGGTGTGGAAGTTCTTGCATATTTCATCTCACTTGACAGCCA-CCTCAGCATGGAGGATTTCACTGAGATTCCCAAGGTAGCTCTTCAGAGGC--AGG--GGCTAGGTTTGGTC--ACTGAGAGAATCAGCTTAAGGGTATTTTTATGTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 584336 206 + 5243153 CTCTCC-------------------------TTTTTTTTTCCTTTCC-ATTGTT--CTTTCTCCCTGCAGGAGAGAGACGGGCCTCAGGGCTGGTGTGGAAGTTCTTGCATATTTCATCTCACTTGACAGCCA-CCTCAGCATGGAGGATTTCACTGAGATTCCCAAGGTCGCTCTTCAGAGGC--AGG--GGCTAGGTTTGGTC--ACTGAGAGAATCAGCTTAAGGGTATTTTTATGTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1919236 205 - 1938448 CTCTCC--------------------------TTTTTTTTCCTTTCC-AATGCT--CTTTCTCCCTGCAGGAGAGAGACGGGCCTCAGGGCTGGTGTGGAAGTGCTTACATATTTCATCTACCTTGACAGCCA-CCTCAGCATGGAGAATTTCACTGAGATTCCCAAGGTAGCTCTTCAGAGGC--AGG--GGCTAGGTTTGGTC--ACTGAGAGAATCAGCTTAAGGGTATTTTTATGTG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2527474 192 + 5252280 CCCTCT----------------------------------CTTTCCCTGAGGCA--CTTTCTCCCTGCAGGAGAAAGACAGGCCCCGAGGCTGGTAGGGAAGC-CTTGCATATTTTATCTCTC-TGACAGCTCTCCCCAG-GTGAGGGCCTTCACTGAGACTCCCACTGTCACTCTTCAGAGAC--A-----GCTGGATTTGGCC--ACCGAGAGAGTCATCGTAAAGGCA-CTTTATGTG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2030993 180 + 64289059 -------------------------------------CCTTTATCTC-AAGGCG--CACTCTCCCTGCAGGAGAG----AGGGTTCTGGGCTAGTGTGAAAGC-C-GGCACGTTTCAGCTAGTTTGGCACT---GCTCAGCCTTGGGGACTCCACAGAG--TCTTGATG-------TCATGCAC--AGGGAGGCTGGATCTGGCCAGACAAATGGAATCAAGGTAAAGGTA-CTTTATATG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 557473 197 + 2232271 CCCACC----------------------------CCTTTTTTTCCCC-AAGGCTTACTCTATCCCTGATGGAGAGAAAAAGCCGTCAGGACGCGCATGAAAGC-CTTGCACATTTCATTTCACTC-ACTGCTCCCCTGAGGGTTAAGAACTGCCCTG-----------GTAACTAATCAGACACTGAGA--GGCTTGGTTTGGCCAGACTAAAAGAATAGCTTTAAAAGTACTTTTATGTg i dasNov3.JH580157 C 0 I 481 e micMur3.chr8 2639121 433 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=2332614.000000 s hg38.chr2_KI270769v1_alt 44148 253 + 120616 CATTTACTTAAGAACAAA----------------------------AGTATGAATTACACCAAAGCAGCTTCTGTATGCATCTTGTTGAAGAG-GGGAGTAGTTtccttgaggaca-----cg---------------gacctcgtggctgtcattgtgtgcacccagtgcaggccctcctgcgcagcgct-aggagctgctgag---taaatgtcagctcagtgaaATTCACACACCTTACCTGGAGCTCACAGATG--GTTTCTCCAGCTGCTTCCATTTATTGTTT----------------TAATTCTGTGATCTATATA s panTro5.chr2A 3503945 253 + 111504155 CATTTACTTAAGAACAAA----------------------------AGTATGAATTACACCAAAGCAGCTTCTGTATGCATCTTGTTGAAGAG-GGGAGTAGTTtccttgaggaca-----cg---------------gacctcgtggctgtcattgtgtgcacccggtgcaggccctcctgcccagcgct-aggagctgctgag---taaatgtcagctcagtgaaATTCACACACCTTACCTGGAGCTCACAGACA--GTTTCTCCAGCTGCTTCCATTTATTGTTT----------------TAATTCTGTGATCTATATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3366666 253 + 114371477 CATTTACTTAAGAACAAA----------------------------AGTATGAATTACACCAAAGCAGCTTCTGTATGCATCTTGTTGAAGAG-GGGAGTAGTTTCCTTGAGGACA-----CG---------------GACCTCGTGGCTGTCATTGTGTGCACCCGGTGCAGGCCCTCCTGCCCAGCGCT-AGGAGCTGCTGAG---TAAATGTCAGCTCAGTGAAATTCACACACCTTACCTGGAGCTCATAGACG--GTTTCTCCAGCTGCTTCCATTTATTGTTT----------------TAATTCTGTGATCTATATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 242955 253 + 637652 CATTTGCTTAAGAACAAA----------------------------AGTATGAATTACACCAAAGCAGCTTCTGTATGCATCTTGTTGAAGAG-GGGAGTAGTTTCCTTGAGGACA-----CG---------------GACCTCGTGGCTGTCATTGTGTGCACGCGGTGCAGGCCCTCCTGCCTAGCACT-AGGAGCTGCTGAG---TAAATGTCAGCTCAGTGAAATTCACACACCTTACCTGGAGCTCACAGACG--GTTTCTCCAGCTGCTTCCATTTATTGTTT----------------TAATTCTGTGATCTATGTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3038395 253 + 81552678 CATTTACTTAAGAACAAA----------------------------AGTATGAATTACACCAAAGCAGCTTCTGTATGCATCTTGCTGAAGAG-GGCAGTAGCTTCCCTGAGGACA-----GG---------------GACCTCGTGGCTGTCATTGTGTGCACCCGGTGCAGGCCCTCCTGCCCAGCGCT-AGGAGCTGCTGAG---TAACTGTCAGCTCAGTGAAATTCACACGCCTTACCTGGAGCGTACAGACA--GTTTCTCCAGCTGCTTCCATTTATTGTTT----------------TAATTCTATGATCCATATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3301074 252 + 108979918 CATTTACTTAAG-ACAAA----------------------------AGTATGAATTACACCAAAGCAGCTTCTGTATGTATCTTGTTGAAGAG-GGGAGTGGTTTCCTCGAGCTCG-----CG---------------GACCCCATAGCTCTCATTGTGTGCACAGGGTGCAGGCCCTCCTGCCCAGCGCC-AGGAGCTGCTAAG---TAAACGTCAGCTCAGTGAAATTCACACGCCCTACCTGGAGCACACAGGCG--GCTTCTCCAGCTGCTTCCGTGTATTGTTT----------------TCATTCTGTGATCCATCTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5013835 252 - 111193037 CATTTACTTAAG-ACAAA----------------------------AGTATGAATTACACCAAAGCAGCTTCTGTATGTATCTTGTTGAAGAC-GGGAGTGGTTTCCTCGAGCTCG-----CG---------------GACCCCATAGCTCTCATTGTGTGCACAGGGTGCAGGCCCTCCTGCCCAGCGCC-AGGAGCTGCTGAG---TAAACGTCAGCTCAGTGAAATTCACACGCCCCACCTGGAGCACACAGGCG--GCTTCTCCAGCTGCTTCCGTTTATTGTTT----------------TCATTCTGTGATCCATCTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3407686 252 + 3644372 CATTTACTTAAG-ACAAA----------------------------AGTATGAATTACACCAAAGCAGCTTCTGTATGTATCTTGTTGAAGAC-GGGAGTGGTTTCCTCGCGCTCG-----CG---------------GACCCCATAGCTCTCATTGTGTGCACAGGGTGCAGGCCCTCCTGCCCAGCGCC-AGGAGCTGCTGAG---TAAACGTCAGCTCAGTGAAATTCACACGCCCCACCTGGAGCACACAGGCG--GTTTCTCCAGCTGCTTCCGTTTATTGTTT----------------TAATTCTGTGATCCATCTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3362924 252 - 10304083 CATTTACTTAAG-ACAAA----------------------------AGTATGAATTACACCAAAGCAGCTTCTGTATGTATCTTGTGGAAGAG-GGGAGTGGTTTCCTCGAGGACA-----CG---------------GACCCCATAGCTCTCATTGTGTGCACAGGGTGCAGGCCCTCCTGCCCAGCGCC-AGGAGCTGCTGAG---TAAATGTCAGCTCAGTGAAATTCACACGCCCCACCTGGAGCGCACAGGCG--GTTTCTCCAGCTGCTTCCATGTATTGTTT----------------TAATTCTATGATCCATCTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3445638 252 - 107702431 CATTTACTTAAG-ACAAA----------------------------AGTATGAATTACACCAAAGCAGCTCCTGTATGTATCTTGTTGAAGAG-GGGAGTGGTTTCCTTGAGGACG-----CG---------------GACCCCATAGCTCTCATTGTGTGCACAGGGTGCAGGCCCTCCTGCCCAGCGCC-AGGAGCTGCTGAG---TAAATGTCAGCTCAGTGAAATTCACCCGCCCCACCTGGAGCGCACAGGCG--GTTTCTCCAGCTGCTTCCATTTATTGTTT----------------TAATTCTATGATCCATCTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 995653 267 + 1565135 CATTTACTTAAG-ACAAA----------------------------AGTATGAATTACACCAAAGCAGCTTCTGTATGTATCTTGTTGAAGAG-GGGAGTGGTTTCCTCGAGGACA-----CGGACCCCATAGCTCTCGACCCCATAGCTCTCATTGTGTGCACAGGGTGCAGGCCCTCGTGCCCAGCGCC-AGGAGCTGCTGAG---TAAATGTCAGCTCGGTGAAATTCACACGCCCCACCTGGAGCGCACAGGCA--GTTTCTCCAGCTGCTTCCATTTAGTGTTT----------------TAATTCTATGATCCATCTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351044 252 - 13651311 CATTTACTTATG-ACAAA----------------------------AGTCTGAATTACACCAAAGCAGCTTCTGTATGTATCTTGTTGAAGAG-GGGAGTGGTTTTCTTGAGGGTG-----CA---------------GACCCCATAGCTCTCATTATGTGCACAGGGTGCAGGCCCTCCTGCCCAGCGCC-AGGAGCTGCTGAG---TAAATGTCAACTCAGTGAAATTCACACGCCCCACCTGGAGCTCACAGGCG--GTTTCTCCAGCTGCTTCCATTTATTGTTT----------------TAATTCTATGATCCACATA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3445177 250 - 108792865 CGTTTACTTAAG-ACAGA----------------------------AGTATGCATTACACCAAAGCAGCATCTGTATGTATTTTGTTGAAGAA-AGGAGTAGTTAGGTTGAGGACTGGGGCCG---------------GACTGCGTGGCTGTC---GTGTGTACCCGG-AACAG-CCTCCTGCGCAGCACC-AGGAGCTGCTGAG---TCAGCCTCAGCTCAGTGAAATTTACGCACCCCACCTGGAGCTCA--------------CCGGCTGCTACCATTTATTGCTT-TTTGTTTG-----TTTAATTCTATGATCCATTTA i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3098440 259 - 7082604 CATTTACTTAAG-ACAAA----------------------------AGTATGCGTTATGCCAAAGCAGCTTCTGTATGTATTTTGTTGAAGAA-GGGAGTAGTTAGGTtgaggacacggaccg---------------gaccacgtggctgtcgttgtgagtacccggtgccag-ccttctgcccagcacc-aggagctgctgag---tcaatgtcagctcagtgaaATTCACACGCCCTGCCTGGAGCTCA--------------CCGGCTGCTTCCATTTATTGTTT-TTCGTTTGTTTGTTTTAATTCTGTGATCCATATA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 584542 259 + 5243153 CATTTACTTAAG-ACAAA----------------------------AGTATGCGTTACACCAAAGCAGCTTCTGTATGTATTTTGTTGAAGAA-GGGAGTAGTTAGGTTGAGGACATGGACCA---------------GACCATGTGGCTGTCATTGTGTGTACCTGGTGCCAG-CCTTCTGCCCAGCACC-GGGAGCTGCTGAG---TCAGTGTCAGCTCAGTGAAATTCACACGCCCCACCTGGAGCTCA--------------CCGGCTGCTTCCATTTACTGTTT-TTCGTTTGTTTGTTTTAATTCTATGATCCATATA i cebCap1.NW_016107454v1 C 0 I 1 s aotNan1.NW_018507213v1 1919441 260 - 1938448 CATTTACTTAAG-ACAAA----------------------------AGTATGCATTACACCAAAGCAGCTTGTGTATGTATTTTGTTGAAGAA-GGGAGTAGTTAGGTTGAGGACATGGACCG---------------GACCGCATGGCTGCCATTGTGTGTACCCGGTGCCAG-CCTTCTGCCCAGCACC-AGGAGCTGCTGAG---TCAGTGTCAGCTCGGTGAAATTCACACACCCTACCTGGAGCTCA--------------CGGGCTGCTTCCgtttgttttttgtttgtttgtttgtttTAATTCTATGATCCATATA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2527666 231 + 5252280 CATTTATTTAAA-ACAAAC---------------------------AATCTGAGCTACATGGAAGCAGGTTCTGTATGTATTTTATTAAAGAGAAGGAATGGCGTCCTTGAGGACG-----GT---------------GACCACAC--CTCTCACTTTGTATATCTGGAGCCTCACCTTGTGTTTGGC---------------AG---TAAGTGTTAAATCAG---------CACGTTCAATCTGGAGTTAGTAGACAGCGTTTCTGCAGATGCTGTCATCTCTTATTT----------------CAAGTCTATGAACAGCATA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2031173 279 + 64289059 CGTGTCTGTAAA-ACAAACAACACTGAGT-CGATAGCATTAGGGAAGGCCTGAGTCCCGTCCAAGCTGTTGCTGTCTGTGCATTCTGAAGACG-TGGAGTGGCTTACCTGGAGACA------G---------------TGCCCCCCCCCCCCAATCTTGTATGCGCAGGCCTGG-TCTTGCATTTGGCACC-TCAACCTGCTGAG---TAAACGTTTGTCCGCTTACGGTAGAGTGCTCAAGCTGGAATGGATCAGCAGTGTTTCTCCAGCGGCTGCTTTTTCGTGTTT----------------TGTCTTTATAAACACTTTG i canFam3.chr17 C 0 I 8 s dasNov3.JH580157 558151 276 + 2232271 CATTTCCTTAAA-ACAAGCAAAACAGTATACGGCATTATTAAGAAAAGTCTAAATTACATCAGAACAGTTTCTGCATGTATCTTATTGAAGAG-----ATAGTTTACCtgagaaca-----gt---------------gaccacatttctctcatttcatatacccagtgcctaacctagtgtttggcacctaaaaggttctgaatattaaatgtctgttcaattaaATTAACACATTTAACCTATAATTAATAAAAAGTGCATCTCCAGCTTTCTC------TTCTTT----------------TAAATCTATGAGCCACATA i dasNov3.JH580157 I 481 C 0 e micMur3.chr8 2639121 433 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=806574.000000 s hg38.chr2_KI270769v1_alt 44401 61 + 120616 TTTTTTCTAGGAAGGGG--TGTTTTTCTTTCTGATTTAATTCCCTACATTTTTCTCTTTCATA s panTro5.chr2A 3504198 61 + 111504155 TTTTTTCTAGGAAGGGG--TGTTTTTCTTTCTAATTTAATTCCCTACATTTTTCTCTTTCATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3366919 61 + 114371477 TTTTTTCTAGGAAGGGG--TGTTTTTCTTTCTGATTTAATTCCCTACATTTTTCTCTTTCATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 243208 61 + 637652 TTTTTTCTAGGAAGGGG--TGTTTTTCTTTCTGATTTAATTCCCTACATTTTTCTCTTTCATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3038648 61 + 81552678 TTTTTTCTAGGAAGGGG--TGTTTTTCTTTCTGATTTAATTCCCTACATTTTTCTCTTTCATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3301326 61 + 108979918 TTTTTTCTAGGAAGGGG--TGTTTTTCTTTCTGATTTAATTCCCTACGTTTTTCTCTTTCATA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014087 61 - 111193037 TTTTTTCTAGGAAGGGG--TGTTTTTCTTTCTGATTTAATTCCCTACGTTTTTCTCTTTCATA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3407938 61 + 3644372 TTGTTTCTAGGAAGGGG--TGTTTTTCTTTCTGATTTAATTCCCTACGTTTTTCTCTTTCATA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3363176 61 - 10304083 TTTTTTCTAGGAAGGGG--TGTTTTTCTTTCTGATTTAATTCCCTACATTTTTCTCTTTCATA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3445890 61 - 107702431 TTTTTTCTAGGAAGGGG--TGTTTTTCTTTCTGATTTAATTCCCTACATTTTTCTCTTTCATA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 995920 61 + 1565135 TTTTTTCTAGGAAGGGG--TATTTTTCTTTCTGATTTAATTCCCTACATTTTTCTCTTTCATA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351296 61 - 13651311 TTTTTTCTAGGAAGGGG--TGTTTTTCTTTCTGATTTAATTCCCTACATTTTTCTCTTGCATA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3445428 60 - 108792865 TTTTTTCTAGAAAGGGC--TGAC-ATTTTTCTGATTTAATTTCCTATGTTTTTCTCTTTCATA i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3098699 61 - 7082604 TTTTTCCTAGGAAGGGG--TGACTTTTTTTCTGATTTAATTTCCTACGTTTTTCTCTTTCATA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 584802 61 + 5243153 TTTTTTTTAGGAAGGGG--TGACTTTTTTTCTGATTTAATTTCCTACGTTTTTCTCTTTCATA i cebCap1.NW_016107454v1 I 1 C 0 s aotNan1.NW_018507213v1 1919701 59 - 1938448 TTTTTTCTAGGAAGGGG--TGAC-TTTTTTCTGATTTAATTTTCTACA-TTTTCTCTTTCATA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2639554 61 - 159902609 TTTTTTCTAGGCAGGGG--TATTTTTCTTTCTGATGTGATTTCCTTCATTTTTCTTTTTCATA i micMur3.chr8 I 433 I 376 s otoGar3.GL873658 2527897 59 + 5252280 ATTTTTTTAGGTAGGGG--TGTTTTTCTCTC--ATTTTATTTCCTTCATTTGTCTTTTTCATA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2031460 63 + 64289059 TTTTTCCTAAGAAGGAGCCTTTTTTTTTTTTTCCCCTGAATAGTTCCATTTTTCTCCTTCCCT i canFam3.chr17 I 8 C 0 s dasNov3.JH580157 558427 61 + 2232271 TATTTTCTAAGAACAGA--CATTTTTCTGTTTCATTGGATTTCTTTCATTTTTCTCTTTCATA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=2541902.000000 s hg38.chr2_KI270769v1_alt 44462 248 + 120616 TGAAGTTGCAGATAATGTTTTTCCTTCGGATTTTTATTC---TTTAAGATTTTTAAC-CTGTGCAAGACTTTTTCAATGATACAAGTCAAGGAGGATGAAGATCTTTTTCCACTTCAGTCTTCACTTTGC-TCCAGCTATTGCTAAGAAAGGCACAAACAATGACAGCATATT---TAAGGAAGAACCTGGCCGGCTTGGGTCAC---CGCTGCTGTCTTTCTTGGTTT-TG-CGTCTACCT-GGGAGAG---CCCAGCTTTTAG- s panTro5.chr2A 3504259 248 + 111504155 TGAAGTTGCAGATAATGTTTTTCCTTCGGATTTTTATTC---TTTAAGATTTTTAAC-CTGGGCAAGACTTTTTCAATGATACAAGTCAAGGAGGATGAAGATCTTTTTCCACTTCAGTCTTCACTTTGC-TCCAGCTATTGCTAAGAAAGGCACAAACAATGACAGCATGTT---TAAGGAAGAACCTGGCCGGCTTGGGTCAC---CGCTGCTGTCTTTCTTGGTTT-TG-CGTCTACCT-GGGAGAG---CCCAGCTTTTAG- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3366980 248 + 114371477 TGAAGTTGCAGATAATGTTTTTCCTTCGGATTTTTATTC---TTTAAGATTTTTAAC-CTGGGCAAGACTTTTTCAATGATACAAGTCAAGGAGGATGAAGATCTTTTTCCACTTCAGTCTTCACTTTGC-TCCAGCTATTGCTAAGAAAGGCACAAACAATGACAGCATGTT---TAAGGAAGAACCTGGCCGGCTTGGGTCAC---CGCTGCTGTCTTTCTTGGTTT-TG-CGTCTACCT-GGGAGAG---CCCAGCTTTTAG- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 243269 249 + 637652 TGAAGTTGCGGATAATGTTTTTCCTTCGGATTTTTATTC---TTTAAGATTTTTAAC-CTGTGCAAGACTTTTTCAATGATACAAGTCAAGGAGGATGAAGATCTTTTTCCACTTCAGTCTTCACTTTGC-TCCAGCTATTGCTAAGAAAGTCACAAACAATGACAGCATGTT---TAAGGAAGAACCTGGCCGGCTTGGGTCAC---CACTGCTGTCTTTCTTGGTTT-TG-CGTCTACCTGGGGAGAG---CCCAGCTTTTAG- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3038709 249 + 81552678 TGAAGTTGCAGATAATGTTTTTCCTTCAGATTTTTATTC---TTTAAGATTTTTAAC-CTGTGCAAGACTTTTTCAATGATACAAGTCAAGAACGAAGAAGATCTTTTTCCACTTCAGTCTTCACTTGGC-TCCAGCTATTGCTAAGAAAGGCAGAAACAATGACAGCATGTT---TAAGGAAGAACCTGGCCGGCTTGGGTCAC---CGCTGCTGTCTTTCTTGGTTT-TG-CGTCTACCTGGGGAGGG---CCCAGCTTTTAG- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3301387 249 + 108979918 TGAAGTTGTAGAT-ATGGTTTTCCTTCGGATTTTTATTCT--TTTAAGATTTTTAAC-CTGTGCGAGACTTTTTCAATGATACAAGTCAATGAGGAGGAAGATCTTCCTCCACATCAGTCTTCACTTTGC-TCCAGGTATTGCTAGGAAAGGCACAAACAATGACAGCATGTT---TAAGGAAGAACCTGGCCGGCTTGGATCAC---CGCTACTGTCATTCTTGGTTT-TG-CATCTACCTGGGGAGGG---CCCAGCTTTTAG- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014148 249 - 111193037 TGAAGTTGTAGAT-ATGGTTTTCCTTCGGATTTTTATTCT--TTTAAGATTTTTAAC-CTGTGCGAGACTTTTTCAATGATACAAGTCAATGAGGAGGAAGATCTTCCTCCACATCAGTCTTCACTTTGC-TCCAGGTATTGCTAGGAAAGGCACAAACAATGACAGCGTGTT---TAAGGAAGAACCTGGCCGGCTTGGATCAC---CGCTACTGTCATTCTTGGTTT-TG-CATCTACCTGGGGAGGG---CCCAGCTTTTAG- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3407999 249 + 3644372 TGAAGTTGTAGAT-ATGGTTTTCCTTCGGATTTTTATTCT--TTTAAGATTTTTAAC-CTGTGCGAGACTTTTTCAATGATACAAGTCAATGAGGAGGAAGATCTTCCTCCACATCAGTCTTCACTTTGC-TCCAGGTATTGCTAGGAAAGGCACAAACAATGAGAGCGTGTT---TAAGGAAGAACCTGGCCGGCTTGGATCAC---CGCTACTGTCATTCTTGGTTT-TG-CATCTACCTGGGGAGGG---CCCAGCTTTTAG- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3363237 249 - 10304083 TGAAGTTGTAGAT-ATGTTTTTTCTTCGGATTTTTATTCT--TTTAAGATTTTTAAC-CTGTGCGAGACTTTTTCAATGATACAAGTCAATGAGGAGGAAGATCTTCTTTCACTTCAGTCTTCACTTTGC-TCCAGGTATTGCTAGGAAAGGCACAAACAATGACAGCGTGTT---TAAGGAAGAACCTGGCCGGCTTGGATCAC---CGCTACTGTCATTCTTGGTTC-TG-CATCTACCTGGGGAGGG---CCCAGCTTTTAG- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3445951 249 - 107702431 TGAAGTTGTAGAT-ATGTTTTTCCTTCGGATTTTTATTCT--TTTAAGATTTTTAAC-CCGTGCGAGACTTTTTCAATGATACACGTCAATGAGGAGGAAGATCTTCTTCCACTTCAGTCTTCACGTTGC-TCCAGGTATTGCTAGGAAAGGCACAAACAATGACAGCGTGTT---TAAGGAAGAACCTGGCCGACTTGGATCAC---CGCTACTGTCATTCTTGGTTT-TG-CATCTACCTGGGGAGGG---CCCAGCTTTTAG- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 995981 249 + 1565135 TGAAGTTGTAGAT-ATGTTTTTCCTTCGGATTTTTATTCT--TTTAAGATTTTTAAC-CTGTGCGAGACTTTTTCAATGATACAAGTCAATGAGGAGGAAGATCTTCTTCCACTTCAGTCTTCACTTTGC-TCCAGGTATTGCTAGGAAAGGCACAAACAATGACAGCGTGTT---TAAGGAAGAACCTGGCCAGCTTGGATCAC---CACTACTGTCATTCTTGATTT-TG-CATCTACCTGGGGAGGG---CCCAGCTTTTAG- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351357 249 - 13651311 TGAAGTTGTAGAT-ATGTCTTTCCTTCGGATTTTTATTCT--TTTAAGATTTTTAAC-CTGTGCGAGACTTCTTCAATGATACAAGTCAATGAGGAGGAAGATCTTTTTCCACTTCAGTCTTCGCTTTGC-TCCAGGTATTGCTAGGAAAGGCACAAACAATGACAGCATGTT---TAAGGAAGAACCTGGCCGGCTTGGATCAC---CGCTACTGTCATTCTTGGTTT-TG-CATCTACCTGGGGAGGG---CCCAGCTTTTAG- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3445488 245 - 108792865 TAAAGTTGTAGAT-ATGTTTTTCCTTTAGATTTTTATTA---TTTAAGATTTTTAGC-CTGCACAAGACTTTTTCACTAATGCAAGTCAACC---AGGAAAATCTTTTTCCACTTCAGTGTTCACTTTGC-TCCAGGTATTTCTAAGAAGGGCACAAACAATGACAGAATGTT---TAAGGAAGAACCTGGCCGGCTTGGGTCAC---CACTGCTGTCTTTCTTGGTTT-TG-CGTCTGCCTGGGGAGGG---CCCAGCTTTTGG- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3098760 248 - 7082604 TAAAGTTGTAGAT-ATGTTTTTCCTTTGGATTTTTATTA---TTTAAGCTTTTTAGC-CTGCACAAGACTTTTTCACTAATGCAAGTCAATCAGGAGGAAGATCTTTTTCCACTTCAGTGTTCACTTTGC-TCCAGGTATTTCTAAGAAGGGCACAAACAATGACAGAATGTT---TAAGGAAGAACCTGGCCGGCTTGGGTCAC---CACTACTGTCTTTCCTGGTTT-TG-TGTCTGCCTGGGGAGGG---CCCAGCTTTCGG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 584863 248 + 5243153 TAAAGTTGTAGAT-ATGTTTTTCCTTTGGATTTTTATTA---TTTAAGATTTTTAGT-CTGCGCAAGACTTTTTCACTAATGCAAGTCAACCAGGAAGAAGATCTTTTTCCACTTCAGTGTTCACTTTGC-TCCAGGTATTTCTAAGAGGGGCACAAACAATGACAGAATGTT---TAAGGAAGAGCCTGACCGGCTTGGGTCAC---CACTACTGTCTTTCCTGGTTT-TG-CATCTGCCTGGGGAGGG---CCCAGCTTTCAG- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1919760 248 - 1938448 TAAAGTTGTAGGT-ATGTTTTTCCTTTGGATTTTTATTA---CTTAAGATTTTTAGC-CTGCACAAGACTTTTTCACTAATGCAAGTCAACCAGGAAGAAGGTCTCTTTCCACTTCAGTGTTCACTTTGC-TGCAGGTATTTCTAAGAAGGACACAAACAATGACAGAATGTT---TAAGGAAGAGCCTGGCCAGCTTGGGGCAC---CACTGCTGTCTTTCCTGATTT-TG-CGTCTGCCTGGGGAGGG---CCCAGCTTTCCG- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2527956 238 + 5252280 ------TGTATGT-CTG---TTCCTTCAGGTTTTTTTTTTTCTTTAAGA---TTAAT-CTGTACAAGACCTTTTCAGTGACACAGGTTAATGAGACAGAAGCATTTTTCCTGCTCCAATCTCTGCTTTGT-TCT-GATATTTCTAAGAAAGACGCAGAT-ATGGCAGTGTGTG---TGAGGAAGGGAGGAGCCGG---GGCTCCCTGTCGCTGCCGTCTGACCTGGTTTCTG-TGTCTGCCTGGGGAGAG---TCCAGTTTCCAG- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2031523 238 + 64289059 GGAGGCTGGG----AGGCATATGCTTCATATGCTTTCCT---CTTAATTTTTTTAAAGCTATGTGAGACCTTTCCAGTGGTGCCA---AGAGAGGATGAAGGCTTTTCCT--------TCTTGATCCAGCTTCCAAATCTGTCTGAGAAAGTCCCAGGTGGAGACAGTGTGCTTGGTAAGGAAGGCACACACAGGCCC---TCAC-----CTGCCCGCTTTCTGTGTTC-AGCCGTCGGGTCGGGCCGAAACTCCCAGATTTAAG- i canFam3.chr17 C 0 I 42 s dasNov3.JH580157 558488 207 + 2232271 ------TGAGTAT-GTGTGTATACCCC---------------CCCATGACCTTTCAA-AGATACAAG------TTAATAAACCAAG--AAAGAAGAGAAAGCCTTTTTTCTTCTTCAGTCTTAGTTTTCT-TCTAGTTATTTCTAAGAAAATCACAAA----AGCAGTGTGTT---TAAGGAAGAGAATGACA---CTGGCTCTT---TTTCACCCT---------TTT-TC-TGTCTGCCAGGGTTGCG---TCCAAATTTCCAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2639615 376 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=348113.000000 s hg38.chr2_KI270769v1_alt 44710 40 + 120616 GTTCCCATTG-AGGGAAGCATGAGAGAGGATTGTTT-GGGGG-------------- s panTro5.chr2A 3504507 40 + 111504155 GTTCCCATTG-AGGGAAGCATGAGAGAGGATTGCTT-GGGGG-------------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367228 40 + 114371477 GTTCCCATTG-AGGGAAGCATGAGAGAGGATTGCTT-GGGGG-------------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 243518 41 + 637652 GTTCTCGTTG-AGGGAAGCATGAGAGAGGATTGCTTGGGGGG-------------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3038958 38 + 81552678 GTTCCCATTG-AGGGAAGCAT--GAGAGGATTGCTT-GGGGG-------------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3301636 40 + 108979918 GTTCCCACTG-AGGGAAGCATGAGAGAGGATTGCTT-AGAGG-------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014397 40 - 111193037 GTTCCCACTG-AGGGAAGCATGAGAGAGGATTGCTT-AGAGG-------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408248 40 + 3644372 GTTCCCACTG-AGGGAAGCATGAGAGAGGATTGCTT-AGAGG-------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3363486 40 - 10304083 GTTCCCACTG-AGGGAAGCATGAGAGAGGATTGCTT-AGAGG-------------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446200 40 - 107702431 GTTCCCCCTG-AGGGAAGCACGAGAGAGGATTGCGT-GGGGG-------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996230 40 + 1565135 GTTCCCACTG-AGGGAAGCATGAGAGAGGATTGCTT-AGAGG-------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351606 40 - 13651311 GTTCCCACTG-AGGGAAGCATGAGAGAGGATTGCTT-GGGGG-------------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3445733 40 - 108792865 GTTCCCACTG-AGGGACACGTGAAAGAGGACTGCTT-GGGGA-------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099008 40 - 7082604 GTTCCCACTG-AGGGACATGTGAAAGCGGATTGCTT-GGGGG-------------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585111 40 + 5243153 GTTCCCACTG-AGGGACACGTGAAAGAGGATTGCTT-GGGGG-------------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920008 40 - 1938448 GTTCCCACTG-AGGGACACCTGAGAGAGGATTGCTT-GGGGG-------------- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2528194 33 + 5252280 AGTCCAGGCA-AGGGAGGCCC--GTTAGGATCACTG-------------------- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 558695 54 + 2232271 ATTCAAATCACAGGGTGGCATGTTA-AGGATCTCTT-GCTACCAACATTTATTCTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2639615 376 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2031761 42 + 64289059 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=636301.000000 s hg38.chr2_KI270769v1_alt 44750 64 + 120616 ATGCTG-CCAGA---GCTTCCAGCTGACAGTCT-CTGCAGAGCGGCTGCCAAGTGGCCTG-G----TGGCCGTA s panTro5.chr2A 3504547 64 + 111504155 ATGCTG-CCAGA---GCTTCCAGCTGACAGTCT-CTGCAGAGCGGCTGCCAAGTGGCCTG-G----TGGCCGTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367268 64 + 114371477 ATGCTG-CCAGA---GCTTCCAGCTGACAGTCT-CTGCAGAGCGGCTGCCAAGTGGCCTG-G----TGGCCGTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 243559 64 + 637652 ATGCTG-CCAGA---GCTTCCAGCTGACAGTCT-CTGCAGAGCGGCTGCCAAGTGGCCTG-G----GGGCCATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3038996 64 + 81552678 GTGCTG-CCAGA---GCTTCCAGCTGACAGTCT-CTGCAGAGCGGCTGCCAAGTGGCCTG-G----TGGCCGTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3301676 64 + 108979918 ATGCTG-CCAGA---GCTTCCAGCTGACGGTCT-TTGCAGAGCGGCTGCCAAGTGGCCTG-G----TGGCCGTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014437 64 - 111193037 ATGCTG-CCAGA---GCTTCCAGCTGACGGTCT-TTGCAGAGCGGCTGCCAAGTGGCCTG-G----TGGCCGTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408288 64 + 3644372 ATGCTG-CCAGA---GCTTCCAGCTGACGGTCT-TTGCAGAGCGGCTGCCAAGTGGCCTG-G----TGGCCGTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3363526 64 - 10304083 ATGCTG-CCAGA---GCTTCCAGCTGACGGTCT-TTGCAGAGCGGCTGCCAAGTGGCCTG-G----TGGCCGTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446240 64 - 107702431 ATGCTG-CCAGA---GCTTCCAGCTGACGATCT-TTGCAGAGCGGCTGCCAAGTGGCCTG-G----TGGCCGTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996270 64 + 1565135 ATGCTG-CCAGA---GCTTCCAGCTGACGGTCT-TTGCAGGGCGGCTGCCAAGTGGCCTG-G----TGGACGTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351646 64 - 13651311 ATGCTG-CCAGA---GCTTCCAGCTGACAGTCT-TTGCAGAGCGGCTGCCAAGTGGCCTG-G----TGGCCGTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3445773 64 - 108792865 CTGCTG-CCAGA---CCTTCCGGCTGACGGTCT-CTGCAGAGCTGCCGACAAGTGGCCTG-G----TGGCCGTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099048 64 - 7082604 CTGCTG-CCAGA---CCTTCCGGCTGACAGTCT-CTGCAGAGCTGCTGACAAGTGGCCTG-G----TGGCCATA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585151 64 + 5243153 CTGCTG-CCAGA---CCTTCTAGCTGACAGTCT-CTGCAGAGCTGCTGACAAGTGGCCTG-G----TGGCCGTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920048 64 - 1938448 CTGCTG-CCAGA---CCTTCCGGCTGACAGTCT-CTGCAGAGCTGCTGACAAGTGGCCTG-G----TGGCCATA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2528227 29 + 5252280 -----------------------------------------GCTGCTCCAGAGGGGCCTATG----GGGCTGCA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2031803 56 + 64289059 ACGCTGCCCGGG---GCTCCCTGCCAGCAGTGTGGTGCAGTGT-GCTG-CGAGGGGCTGG-G------------ i canFam3.chr17 I 42 C 0 s dasNov3.JH580157 558749 72 + 2232271 AGCCTG-TAAGAGATGCTTTCAACTTGCAGTTTAGTGCTGAACTGCTACATTGAGAATTG-GATGTTGGTTATA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2639615 376 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=144843.000000 s hg38.chr2_KI270769v1_alt 44814 9 + 120616 TGTTGGCAG s panTro5.chr2A 3504611 9 + 111504155 TATTGGCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367332 9 + 114371477 TGTTGGCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 243623 9 + 637652 TGTTGGCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039060 9 + 81552678 TGTTGGCAG i nomLeu3.chr19 C 0 I 1 s rheMac8.chr13 3301740 9 + 108979918 TGTTGGCAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014501 9 - 111193037 TGTTGGCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408352 9 + 3644372 CGTTGGCAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3363590 9 - 10304083 TGTTGGCAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446304 9 - 107702431 TGTTGGCAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996334 9 + 1565135 TGTTGGCAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351710 9 - 13651311 TGTTGGCAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3445837 9 - 108792865 TGTTGGCAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099112 9 - 7082604 TGTTGGCAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585215 9 + 5243153 TGTTGGCAG i cebCap1.NW_016107454v1 C 0 I 12 s aotNan1.NW_018507213v1 1920112 9 - 1938448 TGTTGGCAG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2639991 9 - 159902609 TGTTGGCAG i micMur3.chr8 I 376 C 0 s otoGar3.GL873658 2528256 9 + 5252280 TGTCCGCAG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2031859 9 + 64289059 GCTTGGCAG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 558821 9 + 2232271 TGTTGGCAG i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=283953.000000 s hg38.chr2_KI270769v1_alt 44823 25 + 120616 TTTTTGATGAATTGGGATTAGGGAA- s panTro5.chr2A 3504620 25 + 111504155 TTTTTGATGAATTGGGATTAGGGAA- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367341 25 + 114371477 TTTTTGATGAATTGGGATTAGGGAA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 243632 25 + 637652 TTTTTGATGAATTGGGATTAGGGAA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039070 25 + 81552678 TTTTTGATGAATTGGGATTAGGGAA- i nomLeu3.chr19 I 1 C 0 s rheMac8.chr13 3301749 25 + 108979918 CTTTGGATGAATTGGGATTAGGGAA- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014510 25 - 111193037 CTTTGGATGAATTGGGATTAGGGAA- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408361 25 + 3644372 CTTTGGATGAATTGGGATTAGGGAA- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3363599 25 - 10304083 CTTTGGATGAATTGGGATTAGGGAA- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446313 25 - 107702431 CTTTGGATGAATTGGGATTAGGGAA- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996343 25 + 1565135 CTTTGGATGAATTGGGATTAGGGAA- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351719 25 - 13651311 CTTTTGATGAATTGGGATTAGGGAA- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3445846 25 - 108792865 GTTTTCATGAATTGGGATTAGGGCA- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099121 25 - 7082604 GTTTTCATGAATTGGGATTAGGGAA- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1920121 25 - 1938448 GTTTTCATGAATTGGGATTAGGGAA- i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2640000 25 - 159902609 GTTTTGATGAACTGGGACTAAGGAA- i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2528265 25 + 5252280 GTTCTGATGAATTGGGACTAGGGGA- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2031868 24 + 64289059 GTGTGGGCGAGCCAGGAACAGGGA-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 558830 26 + 2232271 ATTTCAATGAATTGAGACTAAGGGAA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e cebCap1.NW_016107454v1 585224 12 + 5243153 I a score=79344.000000 s hg38.chr2_KI270769v1_alt 44848 5 + 120616 TGTTT s panTro5.chr2A 3504645 5 + 111504155 TGTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367366 5 + 114371477 TGTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 243657 5 + 637652 TGTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039095 5 + 81552678 TGTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3301774 5 + 108979918 TGTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014535 5 - 111193037 TGTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408386 5 + 3644372 TGTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3363624 5 - 10304083 TGTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446338 5 - 107702431 TGTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996368 5 + 1565135 TGTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351744 5 - 13651311 TGTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3445871 5 - 108792865 TGTTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099146 5 - 7082604 TGTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585236 5 + 5243153 TGTTT i cebCap1.NW_016107454v1 I 12 C 0 s aotNan1.NW_018507213v1 1920146 5 - 1938448 TGTTT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2640025 5 - 159902609 TGTTT i micMur3.chr8 C 0 I 707 s otoGar3.GL873658 2528290 5 + 5252280 TGTTT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 558856 5 + 2232271 TGTTT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2031892 0 + 64289059 C e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=2163943.000000 s hg38.chr2_KI270769v1_alt 44853 211 + 120616 GTTTACTTGATAACCGAGTGTCTACA-AGGAGAGGTGGCAGCGTGAGGGAATAGTGCCACCATAATGAGGACACAGCCAGCCATCTCTTCCCTGCCACAGAACCCCAGGCAGT-CCCCTTCAGGCTACAGTTTTCCATCTGGACCGAGGGACT--GGCCGGTGCAGCAGGAGGAGCCGATC-------ACCCTCTGTGGGAACGAGGATGCCCAGAAG----TTCC s panTro5.chr2A 3504650 211 + 111504155 GTTTACTTGATAACCGAGTGTCTACA-AGGAGAGGTGGCAGCGTGAGGGAATAGTGCCACCATAATGAGGACACAGCCAGCCATCTCTTCCCTGCCACAGAACCCCAGGCAGT-CCCCTTCAGGCTACAGTTTTCCATCTGGACTGAGGGACT--GGCCGGTGCAGCAGGAGGAGCCGATC-------ACCCTCTGTGGGAACGAGGATGCCCAGAAG----TTCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367371 211 + 114371477 GTTTACTTGATAACCGAGTGTCTACA-AGGAGAGGTGGCAGCGTGAAGGAATAGTGCCACCATAATGAGGACACAGCCAGCCATCTCTTCCCTGCCACAGAACCCCAGGCAGT-CCCCTTCAGGCTACAGTTTTCCATCTGGACCGAGGGACT--GGCCGGTGCAGCAGGAGGAGCCGATC-------ACCCTCTGTGGGAACGAGGATGCCCAGAAG----TTCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 243662 211 + 637652 GTTTACTTGATAACCAAGTGTCTACA-AGGAGAGGCGGCAGCGTGAGGGAATAGTGCCACCATAATGAGGACACAGCCAGCCATCTCCTCCCTGCCACAGAACCCCAGGCAGT-CCCCTTCAGGCTACAGTTTTCCATCTGGACCGAGGGACT--GGCTGGTGCAGCAGGAGGAGCCGATC-------ACCCTCTGTGGGAACGAGGATGCCCAGAAg----ttcc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039100 211 + 81552678 GTTTACTTGATAACCAAGTTTCTACA-AGGAGAGGTGGCAGCGTGAGGGAATAGTGCCACCATAATGAGGACACAGCCAGCCATCTCTTCCCTGCCACAGAACCCCAGGCAGT-CCCCTTCAGGCTGCAGTTTTCCGTCTGGACCAAGAGACT--GGCCGGTGAAGCAGGAGGAGCCGATC-------ACCCTCCGTGGGAACGAGGATGCCCAGTAG----TTCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3301779 198 + 108979918 GTTTACTTGATAACCGAGTATCTACA-AGGAGAGGTGGCAGCGTGAGGGAATAGTGCCACCATAACGAGGACACAGCCAGCCATCTCTTCCCTGCCACAGAACCCCAGGCAGT-CCCCTTCAGGCTGCAGTTTTCCGTCTGGACCGAGGGACT--GGCCGGTGGAGCAGGAGGAGCCGATC-------ACCCTCCG-------------GCTCAGAAG----TTTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014540 211 - 111193037 GTTTACTTGATAACCGAGTATCTACA-AGGAGAGGTGGCAGCGTGAGGGAATAGTGCCACCATAACGAGGACACAGCCAGCCATCTCTTCCCTGCCACAGAACCCCAGGCAGT-CCCCTTCAGGCTGCAGTTTTCCGTCTGGACTGAGGGACT--GGCCGGTGGAGCAGGAGGAGCCGATC-------ACCCTCCGTGGGAACGAGGATGCTCAGAAG----TTTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408391 211 + 3644372 GTTTACTTGATAACCGAGTATCTACA-AGGAGAGGTGGCAGCGTGAGGGAATAGTGCCACCATAACGAGGACACAGCCAGCCTTCTCTTCCCTGCCACAGAACCCCAGGCAGT-CCCCTTCAGGCTGCAGTTTTCCGTCTGGACTGAGGGACT--GGCCGGTGGAGCAGGAGGAGCCCATC-------ACCCTCCGTGGGAACGAGGATGCTCAGAAG----GTTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3363629 211 - 10304083 GTTTACTTGATAACCGAGTATCTACA-AGGAGAGGTGGCAGCGTGAGGGAATAGTGCCACCATAACGAGGACGCAGCCAGCCATCTCTTCCCTGCCACAGAACCCCAGGCAGT-CCCCTTCAGGCTGCAGTTTTCCGTCTGGACTGAGGGACT--GGCCGGTGGAGCAGGAGGAGCCAATC-------ACCCTCCATGGGAACGAGGATGCTCAGAAG----TTTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446343 211 - 107702431 GTTTACTTGATAACCGAGTATCTACA-AGGAGAGGTGGCAGCGTGAGGGAA-AGTGCCACCATAATGAGGACACAGCCAGCCATCTCTTCCCTGCCACAGAACCCCAGGCAGTCCCCCTTCAGGCTGCAGTTTTCCGTCTGGACTGAGGGACT--GGCCGGTGGAGCAGGAGGAGCCGATC-------ACCCTCCGTGGGAACGAGGATGCGCAGAAG----TTTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996373 211 + 1565135 GTTTACTTGATAACCGAGTATCTACA-AGGAGAGGTGGCAGCGTGAGGGAATAGTGCCACCATAACGAGGACACAGCCAGCCATCTCTTCCCTGCCACAGAACCCCAGGCAGT-CCCCTTCAGGCTGCAGTTTTCCGTCTGGACTGAGGGACT--GGCCGGTGGAGCAGGAGGAGCCGATC-------ACCCTCCGTGGGAACGAGGATGCGCAGAAG----TTTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351749 211 - 13651311 GTTTACTTGATAACCGAGTATCTACA-AGGAGAGGTGGCAGCGTGAGGGAATAGTGCCACCATAATGAGGACACAGCCAGCCATCTCTTCCCTGCCACAGAACCCCAGGCAGT-CCCCTTCAGGCTGCAGTTTTCCGTCTGGACTGAGGGACT--GGCCGGTGGAGCAGAAGGAGCTGATC-------ACCCTCCGTGGGAACGAGGATGTGCAGAAG----TTTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3445876 206 - 108792865 GTTTACTTGATAACCCATTGTCCACA-AAGAGAGGCGGCAGCATGAGGGAACAGTGCCACCATAATGAGGACACGGCCAAC--CCCCTACCCTGCCACAGAACCCTGGGCAGT-CCCCTTCAGGCTGCAATTTTCCCTCTGGACTGAGGGACT--GGCCGGTGGAGCAGGA-GAACTGATC-------ACCCCCCATGGGAACGAGGACTCCCAGAAG----TT-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099151 208 - 7082604 GTTTACTTGATAACCCATTGTCCACA-AGGAGGGGCGGCAGCATGAGGGAACAGTGCCACCATAATGAGGACACAGCCAAC--TCCCTACCCTGCTATAGAACCCTGGGCAGT-CCCCTTCAGGCTGCAGTTTTCCATCTGGACTGAGGGACT--GGCAGGTGGAGCAGGA-GAACTGATC-------ACCCTCCATGGGAACAAGGATGCCCAGAAG----TTAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585241 208 + 5243153 GTTTACTTGATAACCCATTGTCCACA-AGGAGAGGTGGCAGCGTGAGGGAACAGTGCCACCATAGTGAGGACACAGCCAAC--TCCCTCCCCTGCCGCAGAACCCTGGGCAGT-CCCCTTCAGGCTGCAGTTTTCCATCTGGACTGAGGGACT--GGCTGGTGGAGCGGGA-GAACTGATC-------ACCCTCCATGGGAAGGAGGATGCCCAGAAG----TTAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920151 208 - 1938448 CTTTACTTGATAACCCGTTGTCCACA-AGGAGAGGCAGCAGCATGAGGGAACAGTGCCACCATAATGAGGACACAGCCAAC--TCCCTACCCTGCCACAGAACCCTGAGCAGT-CCGCTTCAAGCCGCAGTTTTCCATCTGGACTGAGGGACT--GGCCGGTGGAGCAGGA-GAACTGATC-------ACCCTCCATGGGAACAAGGATGCCCAGAAG----TTAG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2528295 155 + 5252280 GTTTACTGGGTAAGCGACCGGGCACACAGCAGAAGAG--AGGGTGAGGGGACA-------------GAGGG---------------------TGTCTGAGACACCCTCTCAGC-TCTCTCCAGGCTGT-------------------GAGACT-------GTGGGGCAGGAGGCACCG-TC-------ACCCTGCGTGGGAACGCAGGTGCCCAAGAGGTCCTTGG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2031892 170 + 64289059 ------------------TGTCCGCC-GGCTGA--------TGCGAGGGAGCGGCACAGCCAGCACGAG-----AGACAGCAGGGCCCTCTCGGCCACAGAGCCCCAAGCACA-TTCCTTCAGGTTTCTGTTTCCTGTCTGGATGGGAGAACC--GGT-----GAACAG-AGGAGCAGATG-------GCCTG--ATGGCAACGAGGAT--CTGGGAG----TTCT i canFam3.chr17 C 0 I 27 s dasNov3.JH580157 558861 204 + 2232271 GTTTACTTAATAAAAAACTATACACA-GAGAG----GATGACTGGAAAGAACAGCGTAGTAATAATGAGAAAACAGC--------TTTTTCCTGCTACCAAGCTC-AAGCAGA-TTCTTTTAAG---CAGATTCCTATCTGGACTGGAGGACTGTGGATGACTAAACAGGAGGAACAAATCCCTGTTAGCTGTTAATGGAAATAAGGATATGGAAAAT----TTTC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2640030 707 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=13923.000000 s hg38.chr2_KI270769v1_alt 45064 1 + 120616 A s panTro5.chr2A 3504861 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367582 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 243873 1 + 637652 a i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039311 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3301977 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014751 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408602 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3363840 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446554 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996584 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351960 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446082 1 - 108792865 A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099359 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585449 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920359 1 - 1938448 A i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2528450 1 + 5252280 A i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 559065 1 + 2232271 A i dasNov3.JH580157 C 0 I 86 e micMur3.chr8 2640030 707 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2032062 27 + 64289059 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=102683.000000 s hg38.chr2_KI270769v1_alt 45065 10 + 120616 GTTACTGTGG s panTro5.chr2A 3504862 10 + 111504155 GTTACTGTGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367583 10 + 114371477 GTTACTGTGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 243874 10 + 637652 gttactgtgg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039312 10 + 81552678 ATTACTGTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3301978 10 + 108979918 GTTACCGTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014752 10 - 111193037 GTTACCGTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408603 10 + 3644372 GTTACCGTGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3363841 10 - 10304083 GTTACCGTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446555 10 - 107702431 GTTACTGTGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996585 10 + 1565135 GTTACCGTGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351961 10 - 13651311 GTTACTGTGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446083 10 - 108792865 GTTACTGCAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099360 10 - 7082604 GTTACTATGG i saiBol1.JH378218 C 0 I 18 s cebCap1.NW_016107454v1 585450 10 + 5243153 GTTACTATGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920360 10 - 1938448 GTTCCTGTGG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2528451 10 + 5252280 GATACTTTGG i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2640030 707 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2032062 27 + 64289059 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e dasNov3.JH580157 559066 86 + 2232271 I a score=10920.000000 s hg38.chr2_KI270769v1_alt 45075 1 + 120616 T s panTro5.chr2A 3504872 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367593 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 243884 1 + 637652 t i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039322 1 + 81552678 t i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3301988 1 + 108979918 t i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014762 1 - 111193037 t i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408613 1 + 3644372 t i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3363851 1 - 10304083 t i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446565 1 - 107702431 t i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996595 1 + 1565135 t i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351971 1 - 13651311 t i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446093 1 - 108792865 T i calJac3.chr14 C 0 I 17 s cebCap1.NW_016107454v1 585460 1 + 5243153 T i cebCap1.NW_016107454v1 C 0 I 16 s aotNan1.NW_018507213v1 1920370 1 - 1938448 T i aotNan1.NW_018507213v1 C 0 I 15 s otoGar3.GL873658 2528461 1 + 5252280 T i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2640030 707 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2032062 27 + 64289059 I e saiBol1.JH378218 3099370 18 - 7082604 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e dasNov3.JH580157 559066 86 + 2232271 I a score=22269.000000 s hg38.chr2_KI270769v1_alt 45076 4 + 120616 TTGT s panTro5.chr2A 3504873 4 + 111504155 TTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367594 4 + 114371477 TTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 243885 4 + 637652 tttt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039323 4 + 81552678 tttt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3301989 4 + 108979918 tttt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014763 4 - 111193037 tttt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408614 4 + 3644372 tttt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3363852 4 - 10304083 tttt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446566 4 - 107702431 tttt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996596 4 + 1565135 tttt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351972 4 - 13651311 tttt i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2528462 4 + 5252280 TTTT i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2640030 707 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2032062 27 + 64289059 I e saiBol1.JH378218 3099370 18 - 7082604 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e dasNov3.JH580157 559066 86 + 2232271 I e cebCap1.NW_016107454v1 585461 16 + 5243153 I e aotNan1.NW_018507213v1 1920371 15 - 1938448 I e calJac3.chr14 3446094 17 - 108792865 I a score=847289.000000 s hg38.chr2_KI270769v1_alt 45080 160 + 120616 ATGttcttctttttgagatggagtctcgctccgtcgcccaggctagagtgcagtggtgcgatctcggctcactgcaatgtccacctcctacattcaagcagttctcctgcctcagcctcccgagtagctgagattataggcgcatgccaccacgcccagc s panTro5.chr2A 3504877 160 + 111504155 ATGttcttctttttgagatggagtctcgctctgtcgcccaggctagagtgcagtggtgcgatctcggctcactgcaatgtccacctcccagattcaagcaattctcctgcctcagcctcccgagtagctgggattataggcgcatgccaccacgcccagc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367598 160 + 114371477 ATGttcttctttttgagatggagtctcgctccgtcgcccaggctagagtgcagtggtgcgatctcggctcactgcaatgtccacctcccagattcaagcaattctcctgcctcagcctcccgagtagctgggattataggcgcatgccaccacgcccagc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 243889 160 + 637652 atgttcttctttttgagatggagtctcgctccgtcgcccaggctagagtgcagtggtgcgatctcggctcactgcaacgtccacctcccagattcaagcaattctcctgcctcagcctcccgagtagctgggattataggcgcatgccaccacgcccagc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039327 157 + 81552678 atg---ttctttttgagatggagtctcgctccgctgcccaggctagagtgcagtggtgcaatctcagctcactgcaacctccacctcccagattcaagcaattctcctgcctcagcctcctgagtagctgggattataggcgcatgccaccacacccagc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3301993 158 + 108979918 atgttcttctttttgagatggagtctaactctgtcgcccaggctggagcgcagtggtgcgatctcggctcgctgcaacctccgcctcccagattcaagcagtcctcctgcctcagcctcc-aagtagcagggatcacaggcgtgcg-ccccacgcccggc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014767 157 - 111193037 atgttcttctttttgagatggagtctaactctgtcgcccaggctggagcgcagtggtgcgatctcggctcgctgcaacctccgcctcccagattcaagcagttcccctgcctcagcctcc-aagtagcagggatcacaggcgtgtg-ccccacg-ccagc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408618 158 + 3644372 atgttcttctttttgagatggagtctaactctgtcgcccaggctggagcgcagtggtgcgatctcggctcgctgcaacctccacctcccagattcaagcagttctcctgcctcagcctcc-aagtagcagggattataggcgtgtgcccccacg-ccagc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3363856 159 - 10304083 atgttcttctttttgagatggagtctaactctgttgcccaggctggagcgcagtggtgcgatctcggctcgctgcaacctccacctcccagattcaagcagttctcctgcctcagcctcc-aagtagcagggattataggcatgtgccaccacgcctagc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446570 159 - 107702431 atgttcttctttttgagatggagtctcactctgtcgcccaggctggagcacactggtgcgatctcggctcgctgcaacctccacctcccagattcaagcagttctcctgcctcagcctct-gagtagcagagattataggcgtgtgccaccacgcctagc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996600 159 + 1565135 atgttcttctttttgagatggagtctaactctgtcgcccaggctggagcgcactgatgcgatctcggctcgctgcaacctccaccttccagattcaagcagttctcctgcctcagcctcc-aagtagcagggattataggcatgtgccaccacgcctagc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3351976 159 - 13651311 atgttcttctttttgagatggagtctcactctgtcgcccaggctggagcgcagtggtgtgatctcggctcgctgcaacctccacctcccagattcaagcagttctcctgcctcagcctcc-gagtagcagggattataggcgtgtgccaccacacctagc i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2640030 707 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2032062 27 + 64289059 I e saiBol1.JH378218 3099370 18 - 7082604 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e dasNov3.JH580157 559066 86 + 2232271 I e otoGar3.GL873658 2528466 0 + 5252280 C e cebCap1.NW_016107454v1 585461 16 + 5243153 I e aotNan1.NW_018507213v1 1920371 15 - 1938448 I e calJac3.chr14 3446094 17 - 108792865 I a score=76074.000000 s hg38.chr2_KI270769v1_alt 45240 13 + 120616 taatatttg-tatt s panTro5.chr2A 3505037 13 + 111504155 taatatttg-tatt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367758 13 + 114371477 taatatttg-tatt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244049 13 + 637652 taatatttg-tatt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039484 13 + 81552678 taatatttg-tatt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3302151 13 + 108979918 taatactgg-tatt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014924 13 - 111193037 taatacttg-tatt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408776 13 + 3644372 taatacttg-tatt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364015 13 - 10304083 taatatttg-tatt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446729 14 - 107702431 taatacttgttatt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996759 13 + 1565135 taatatttg-tatt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352135 13 - 13651311 taatatttg-tatt i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2528466 13 + 5252280 TAATGGTTG-TATC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2640030 707 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2032062 27 + 64289059 I e saiBol1.JH378218 3099370 18 - 7082604 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e dasNov3.JH580157 559066 86 + 2232271 I e cebCap1.NW_016107454v1 585461 16 + 5243153 I e aotNan1.NW_018507213v1 1920371 15 - 1938448 I e calJac3.chr14 3446094 17 - 108792865 I a score=804481.000000 s hg38.chr2_KI270769v1_alt 45253 144 + 120616 tttagtagagacggggttttcgccatgttggccaggctggtctc-taacttccagcctcaagtga--tctgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcTGAGTTACTGTTAACTGTTAC s panTro5.chr2A 3505050 144 + 111504155 tttagtagagacggggttttcgccatgttggccaggctggtctc-taacttccagcctcaagtga--tctgcccgcctcagcctcccaaagtgctgggattacaggcgtgagacaccgcgcccagcTGAGTTACTGTTAACTGTTAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367771 144 + 114371477 tttagtagagacggggttttcgccatgttggccaggctggtctc-taacttccagcctcaagtga--tctgcccgcctcagcctcccaaagtgctgggattacaggcgtgagacaccgcgcccagcTGAGTTACTGTTAACTGTTAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244062 144 + 637652 tttagtagagacggggttttcgccacgttggccaggctggtctc-taacttccagcctcaagtga--tccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccgccgcgcccagctgagttactgttaactgttac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039497 145 + 81552678 tttagtagagacggggttttcgccatgttggccaggctggtctcttaacttccagcctcaagtga--tctgcccgcctcagcctctcaaagtgctgggattacaggcgtgagccaccgcgcccagcTGAGTTATTGTTAACTGTTAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3302164 141 + 108979918 tttggtagagacagggttttcgccatgttggccaggctggtctc-gaacttccagcctcaagtga--tctgcgcgcctcagcctcccaaagtgctgggatgacaggcatgagccaccgtgcccagcTGAGTTA---TTAACTGTTAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5014937 141 - 111193037 tttggtagagacagggttttcgccatgttggccaggctggtctc-gaacttccagcctcaagtga--tctgcgcgcctcagcctcccaaagtgctgggatgacaggcatgagccaccgtgcccAACTGAGTTA---TTAACTGTTAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408789 141 + 3644372 tttggtagagatagggttttcgccatgttggccaggctggtctc-gaacttccagcctcaagtga--tctgcgcgcctcagcctcccaaagtgctgggatgacaggcatgagccaccgtgcccagcTGAGTTA---TTAACTGTTAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364028 143 - 10304083 tttggtagagacagggttttcgccatgttggccaggctagtctc-gaacttccagcctcaagtgatctctgcgcgcctcagcctcccaaagtgctgggatgacaggcatgagcccccgcgcccagcTGAGTTA---TTAACTGTTAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446743 141 - 107702431 tttggtagagacaggtttttcgccatgttggccaggctggtctc-gaacttccagcctcaagtga--tctgtgcgcctcagcctcccaaagtgctgggatgacaggcatgagccaccgcgcccagcTGAGTTA---TTAACTGTTAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996772 141 + 1565135 tttggtagagacagggttttcgccatgttggccaggctgctctc-gaacttccagcctcaagtga--tctgcgcgcctcagcctcccaaagtgctgggatgacaggcatgagccaccgcgcccagcTGAGTTA---TTAACTGTTAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352148 144 - 13651311 tttggtagagacagggttttcgccatgttggccaggctggtctc-gaacttccagcctcaagtgg--tctgcgcgcctcagcctcccaaagtgctgggattacaggcatgagctaccgcgcccagcTGAGTTATTGTTAACTGTTAC i colAng1.NW_012118821v1 C 0 C 0 e micMur3.chr8 2640030 707 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2032062 27 + 64289059 I e saiBol1.JH378218 3099370 18 - 7082604 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e dasNov3.JH580157 559066 86 + 2232271 I e otoGar3.GL873658 2528479 0 + 5252280 C e cebCap1.NW_016107454v1 585461 16 + 5243153 I e aotNan1.NW_018507213v1 1920371 15 - 1938448 I e calJac3.chr14 3446094 17 - 108792865 I a score=-2493.000000 s hg38.chr2_KI270769v1_alt 45397 3 + 120616 TGG s panTro5.chr2A 3505194 3 + 111504155 TGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367915 3 + 114371477 TGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244206 2 + 637652 t-g i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039642 3 + 81552678 TGG i nomLeu3.chr19 C 0 I 2 s rheMac8.chr13 3302305 3 + 108979918 GTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015078 3 - 111193037 GTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408930 3 + 3644372 GTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364171 3 - 10304083 GTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446884 3 - 107702431 GTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996913 3 + 1565135 ATG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352292 3 - 13651311 GTG i colAng1.NW_012118821v1 C 0 C 0 s canFam3.chr17 2032089 3 + 64289059 TCA i canFam3.chr17 I 27 C 0 e micMur3.chr8 2640030 707 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e saiBol1.JH378218 3099370 18 - 7082604 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e dasNov3.JH580157 559066 86 + 2232271 I e otoGar3.GL873658 2528479 0 + 5252280 C e cebCap1.NW_016107454v1 585461 16 + 5243153 I e aotNan1.NW_018507213v1 1920371 15 - 1938448 I e calJac3.chr14 3446094 17 - 108792865 I a score=165511.000000 s hg38.chr2_KI270769v1_alt 45400 26 + 120616 GGGGGCAGGGGAATGGCTCATTAACA s panTro5.chr2A 3505197 26 + 111504155 GGGGGCAGGGGAAGGGCTCATTAACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367918 26 + 114371477 GGGGGCAGGGGAAGGGCTCATTAACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244208 26 + 637652 GGGGGCAGGGGAAGAGCTCATTAACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039647 26 + 81552678 GGGGGCAGGGGAAGGGCTCATTAACA i nomLeu3.chr19 I 2 C 0 s rheMac8.chr13 3302308 26 + 108979918 GGGGGCAGGGGAAGGGCTCGTTATCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015081 26 - 111193037 GGGGGCAGGGGAAGGGCTCATTATCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408933 26 + 3644372 GGGGGCAGGGGAAGGGCTCATTATCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364174 26 - 10304083 GGGGGCAGGGGAAGGGCTCATTATCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446887 25 - 107702431 GGGGGT-GGGGAAGGGCTCATTATCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996916 26 + 1565135 GGGGGCAGGGGAAGGGCTCATTATCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352295 26 - 13651311 GGGGGCAGGGGAAGGGCTCATTATCA i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2528479 26 + 5252280 AGGAGCACGGAAAAGCCTCATGAATA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2032092 23 + 64289059 ---GGGTGAGGGAGGATGCATTAATA i canFam3.chr17 C 0 C 0 e micMur3.chr8 2640030 707 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e saiBol1.JH378218 3099370 18 - 7082604 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e dasNov3.JH580157 559066 86 + 2232271 I e cebCap1.NW_016107454v1 585461 16 + 5243153 I e aotNan1.NW_018507213v1 1920371 15 - 1938448 I e calJac3.chr14 3446094 17 - 108792865 I a score=204997.000000 s hg38.chr2_KI270769v1_alt 45426 38 + 120616 TTTTTTTAAATAACATTAAC--A-------TTTTTAAAATGTTAAAA s panTro5.chr2A 3505223 38 + 111504155 TTTTTTTAAATAACATTAAC--A-------TTTTTAAAATGTTAAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367944 38 + 114371477 TTTTTTTAAATAACATTAAC--A-------TTTTTAAAGTGTTAAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244234 40 + 637652 TTTTTTTAAATAACATTAACATA-------TTTTTAAAATGTTAAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039673 45 + 81552678 TTTTTTTAAATAACATTAAC--ATATTTTCTTTTTAAAATGTTAAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3302334 45 + 108979918 TTTTTTTAAATAACATTAAT--GTATTTTCTTTTTAAAATGTTAAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015107 45 - 111193037 TTTTTTTAAATAACATTAAT--GTATTTTCTTTTTAAAATGTTAAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3408959 45 + 3644372 TTTTTTTAAATAACATTAAT--GTATTTTCTTTTTAAAATGTTAAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364200 45 - 10304083 TTTTTTTAAATAACATTAAT--GTATTTTCTTTTTTAAATGTTAAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446912 45 - 107702431 TTTTTTTAAATAATATTAAC--ATATTTTCTTTTTAAAATGTTAAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996942 45 + 1565135 TTGTTTTAAATAACATTAAT--GTATTTTCTTTTTAAAATGTTAAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352321 45 - 13651311 TTTTTTTAAATAATATTAAC--ATATTTTCTTTTTAAAATGTTAAAA i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2528505 23 + 5252280 TTTTTTAAAATATCA-------A-----------------GTTAAAA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2032115 23 + 64289059 TTTC------TAAAATTAAC--A----------------TGCTGAAA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 559152 23 + 2232271 TTTCtttaaaaaaaa--aaa--a--------------------aaaa i dasNov3.JH580157 I 86 C 0 e micMur3.chr8 2640030 707 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e saiBol1.JH378218 3099370 18 - 7082604 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e cebCap1.NW_016107454v1 585461 16 + 5243153 I e aotNan1.NW_018507213v1 1920371 15 - 1938448 I e calJac3.chr14 3446094 17 - 108792865 I a score=894767.000000 s hg38.chr2_KI270769v1_alt 45464 106 + 120616 TTTAATTCTGAAAGAA-----TTTTGCTACATTAGCGCTAGTTTTAATTGTG----ATTTTATTCAATATGTCCCCCAAATGTAAGGAAGAAATTGGTACATTTTGTTCACAAAA s panTro5.chr2A 3505261 106 + 111504155 TTTAATTCTGAAAGAG-----TTTTGCTACATTAGTGCTAGTTTTAATTGTG----ATTTTATTCAATATGTCCCCCAAATGTAAGGAAGAAATTGGTACATTTTGTTCACAAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3367982 106 + 114371477 TTTAATTCTGAAAGAG-----TTTTGCTACATTAGTGCTAGTTTTAATTGTG----ATTTTATTCAATATGTCCCGCAAATGTAAGGAAGAAATTGGTACATTTTGTTCACAAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244274 106 + 637652 TTTAATCCTGAAAGAA-----TTTTGCTACATTAGTGCTAGTTTTAATTGTG----ATTTTATTCAATATGTCCCCCAAATGTAAGGAAGAAATTGGTACATTTTGTTCACAAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039718 106 + 81552678 TTTAATTCTGAAAGAA-----TTTTGCTACATTAGTGCTAGTTTTAATTGTG----ATTTTATTCAATATGTCCCCCAAATGTAAGGAAGAAATGGGTAAATTTTGTTCACAAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3302379 106 + 108979918 TTTAATTCTGAAAGGA-----TTTTGCTACATTAGTGCTAGTTTTAATTGTG----ATTTTATTCAATATGTCCCCCAGATGTAAGGAAGAAATGGATAAATTTTGTTCACAAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015152 106 - 111193037 TTTAATTCTGAAAGGA-----TTTTGCTACATTAGTGCTAGTTTTAATTGTG----ATTTTATTCAATATGTCCCCCAGATGTAAGGAAGAAATGGATAAATTTTGTTCACAAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409004 106 + 3644372 TTTAATTCTGAAAGGA-----TTTTGCTACATTAGTGCTAGTTTTAATTGTG----ATTTTATTCAGTATGTCCCCCATATGTAAGGAAGAAATGGATAAATTTTGTTCACAAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364245 106 - 10304083 TTTAATTCTGAAAGGA-----TTTTGCTACATTAGTGCTAGTTTTAATTGTG----ATTTTATTCAATATGTCCCCCAGATGTAAGGAAGAAATGGATAAATTTTGTTCACAAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3446957 106 - 107702431 TTTAATTCTGAAAGAA-----TTTTGCTACATTAGTGCTAGTTTTAATTGTG----ATTTTATTCACTATGTCCCCCAAATGTAAGGAAGAAATGGGTAAATTTTGTTCACAAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 996987 106 + 1565135 TTTAATTCTGAAAGGA-----TTTTGCTACATTAGTGCTAGTTTTAATTGTG----ATTTTATTCAATATGTCCCCCAAATGTAAGGAAGAAATGGATAAATTTTGTTCACAAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352366 106 - 13651311 TTTAATTCTGAAAGAA-----TTTTGCTACATTAGTGCTAGTTTTAATGGTG----ATTTTATTCAATATATCCCCCAAATGTAAGGAAGAAATGGGTAAATTTTGTTCACAAAA i colAng1.NW_012118821v1 C 0 C 0 s micMur3.chr8 2640737 106 - 159902609 TTTAATTCTGAAAGAA-----TTTTGCTACATTAATATTAGTGTTATTTGTG----ATTTTATTCAACATGCCCCTCGGTTTCAAGGAGGAAATGGGTAAATTTTGTTCACAAAA i micMur3.chr8 I 707 I 350 s otoGar3.GL873658 2528528 103 + 5252280 TTTAATTCTGAAAGAA-----TTTTCCTACATTAGTACTGGCTTTATTTGTG----ATTTCACTCAACATGTTCCTCAAATTCCAGGAGGAAATAGGTAAA---TGTCCATGAAG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2032138 93 + 64289059 TTT--TTTTGAACAAAAGAGTTTTTGTTCCACTAGTATTAGTTTT----GTG----ATTTTATTCATGG----CCCCACGTTCAAGGAAGACATGGGTAAATTTTGT-------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 559175 108 + 2232271 tttaattCTGAAAAAT----TTTTTGCTATATTAG---TAATTTTGTGTGTGTGTAATTTTATTCAACATGTCCCCCCAGTTCAAGGAAGAAATGGGTACATTTTGTTCACCAAA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91415283 1115 - 120129022 I e saiBol1.JH378218 3099370 18 - 7082604 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e cebCap1.NW_016107454v1 585461 16 + 5243153 I e aotNan1.NW_018507213v1 1920371 15 - 1938448 I e calJac3.chr14 3446094 17 - 108792865 I a score=1599567.000000 s hg38.chr2_KI270769v1_alt 45570 255 + 120616 ATACCCTCCCCACCTCCCAAA-AGCAGTAGAAATGGGAGTGCCATAGCA--CGGGGGAGATTTGAAAAGAGCCCGGAAGTTGGGTTTGTTGGAGGAGGAGGA-------------------TCTGAGCACA---GCTCAGCTCCACCTGCTC----CAG-----CAGCGCAGAGTCCAC---GAGTACAAGCAG--------------GTGTTTGG-TCCCCAAGG--CCTCAC-------------AGAAGTTCAG------------GCAGAATTTCATCACTTTCTTTTCCCTTAACCCCCATTTAGGTTTTAAACGCCTGTGTGGTTTTT s panTro5.chr2A 3505367 255 + 111504155 ATATCCTCCCCACCTCCCAAA-AGCAGTAGAAATGGGAGTGCCATAGCA--CGGGGGAGATTTGAAAAGAGCCCGGAAGTTGGGTTTGTTGGAGGAGGAGGA-------------------TCTGAGCACA---GCTCAGCTCCACCTGCTC----CAG-----CAGCGCAGAGTCCAC---GAGTACAAGCAG--------------GTGTTTGG-TCCCCAAGG--CCTCAC-------------GGAAGTTCAG------------GCAGAATTTCATCACTTTCTTTTCCCTTAACCCCCATTTAGGTTTTAAACGCTTGTGTGGTTTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368088 255 + 114371477 ATATCCTCCCCACCTCCCAGA-AGCAGTAGAAATGGGAGTGCCATAGCA--CGGGGGAGATTTGAAAAGAGCCCGGAAGTTGGGTTTGTTGGAGGAGGAGGA-------------------TCTGAGCACA---GCTCAGCCCCACCTGCTC----CAG-----CAGCGCAGAGTCCAC---GAGTACAAGCAG--------------GTGTTTGG-TCCCCAGGG--CCTCAC-------------AGAAGTTCAG------------GCAGAATTTCATCACTTTCTTTTCCCTTAACCCCCATTTAGGTTTTAAACGCCTGTGTGGCTTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244380 255 + 637652 ATATCCTCCCCACCTCCCAAA-AGCAGTAGAAATGGGAGTGCCATAGCA--CGGGGGAGATTTGAAAAGAGCCCGGAAGTTGGGTTTGTTGGAGGAGGAGGA-------------------TCTGAGCACA---GCTCAGCTCCACCTGCTC----CAG-----CAGCGCAGAGTCCAC---GAGTACAAGCAG--------------GTGTTTGG-TCCCCAAGG--CCTCAC-------------AGAAGTTCAG------------GCAGAATTTCATCACTTTCTTTTCCCTTAACCCCCATTTAGGTTTTAAACGCCTGTGTGGTTTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3039824 255 + 81552678 ATATCCTCCCCACCTCCCAAA-AGCAGTAGCAATGGGAGTGCCTTAGCA--CGGGGGAGATTTGAAAAGAGCCCGGAAGTTGGGTTTGTTGGAGGAGGAGGA-------------------TCTGACTGCA---GCTCAACTCCACCTGCTC----CAG-----CAGCGCAGAGTCCAC---GAGTACAAGCAG--------------GCGTTTGC-TCCCCAAGG--CCTCAC-------------AGAAGTTCAG------------GCAGAATTTCATCACTTTCTTTTCCCTTAACCCCCATTTAGGCTTTAAACGCCTGTGTGGTTTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3302485 255 + 108979918 ATATCCTCCCCACCTCCCAAA-AGCAGTAGCAATGGGAGCACCTTAGCA--CGTGGGAGATTTGAAAAGAACCTGGAAGTCAGGTTTGTTGGAGGAGGAGGA-------------------TCTGACCACA---GCTCAACTCCACCTGCTC----CAG-----CAGTGCGGAGTCCAC---AGGTACAAGCAG--------------GCGTTTGG-TCCCCAAGG--CCTCAC-------------AGAAGTTCAG------------GCAGAATTTCATCACCTTCTTTTCCCTTAACCCCCATTTAGGCTTTAAACGCCTGTGTGGTTTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015258 255 - 111193037 ATATCCTCCCCACCTCCCAAA-AGCAGTAGCAATGGGAGCACCTTAGCA--CGTGGGAGATTTGAAAAGAACCTGGAAGTCAGGTTTGTTGGAGGAGGAGGA-------------------TCTGACCACA---GCTCAACTCCACCTGCTC----CAG-----CAGTGCGGAGTCCAC---AGGTACAAGCAG--------------GCGTTTGG-TCCCCAAGG--CCTCAC-------------AGAAGTTCAG------------GCAGAATTTCATCACCTTCTTTTCCCTTAACCCCCATTTAGGCTTTAAACGCCTGTGTGGTTTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409110 255 + 3644372 ATATCCTCCCCACCTCCCAAA-AGCAGTAGCAATGGGAGCACCTTAGCA--CGTGGGAGATTTGAAAAGAACCTGGAAGTCAGGTTTGTTGGAGGAGGAGGA-------------------TCTGACCACA---GCTCAACTCCACCTGCTC----CAG-----CAGTGTGGAGTCCAC---AGGTACAAGCAG--------------GCGTTTGG-TCCCCAAGG--CCTCAC-------------AGAAGTTCAG------------GCAGAATTTCATCACCTTCTTTTCCCTTAACCCCCATTTAGGCTTTAAACGCCTGTGTGGTTTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364351 254 - 10304083 ATA-CCTCCCTACCTCCCAAA-AGCAGTAGCAATGGGAGCACCTTAGCA--CGTGGGAGATTTGAAAAGAACCTGGAAGTCAGGTTTGTTGGAGGAGGAGGA-------------------TCTGACCACA---GCTCAACTCCACCTGCTC----CAG-----CAGTGCGGAGTCCAC---AGGTACAAGCAG--------------GCATTTGG-TCCCCAAGG--CCTCAC-------------AGAAGTTCAG------------GCAGAATTTCATCACCTTCTTTTCCCTTAACCCCCATTTAGGCTTTAAACGCCTGTGTGGTTTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447063 255 - 107702431 ATATCCTCCCCACCTCCCAAA-AGCAGTAGCAATGGGAGCACCTTAGCA--CGTGGGAGATTTGAAAAGAACCTGGAAGTCAGGTTTGTTGGAGGAGGAGGA-------------------TCTGACCACA---GCTGAACTCCACCTGCTC----CAG-----CAGCGCGGAGTCCAC---AGGTACAAGCAG--------------GCGTTTGG-TCCCCAAGG--CCTCAC-------------AGAAGTTCAG------------GCAGAATTTCATCACCTTCTTTTCCCTTAACCCCCATTTAGGCTTTAAACGCCTGTGTGGTTTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997093 255 + 1565135 ATATCCTCCCCACCTCCCAAA-AGCAGTAGCAATGGGAGCACCTTAGCA--CGTGGGAGATTTGAAAAGAACCTGGAAGTCAGGTTTGTTGGAGGAGAAGGA-------------------TCTGACCACA---GCTCAACTCCACCTGCTC----CAG-----CAGCGCGGAGTCCAC---AGGTACAAGCAG--------------GCGTTTGG-TCCCCAAGG--CCTCAC-------------AGAAGTTCAG------------GCAGAATTTCATCACCTTCTTTTCCCTTAACCCCCATTTAGGCTTTAAACGCCTGTGTGGTTTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352472 255 - 13651311 ATATCCTCCCTACCTCCCAAA-AGCAGTAGCAATGGGAGCACCTTAGCA--CGTGGGAGATTTGAAAAGAACCTGGAAGTCAGGTTTCTTGGAGGAGGAGGA-------------------TCTGACCACA---GCTCAACTCCACCTGCTC----CAG-----CAGCGCGGAGTCCAC---AGGTACAAGCAG--------------GCGTTTGG-TCCCCAAGG--CCTCAC-------------AGAAGTTCAG------------GCAGAATTTCATCACCTTCTTTTCCCTTAACCCCCATTTAGGCTTTAAATGCCTGTGTGGTTTTT i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2528631 262 + 5252280 TTGGCCTCCCGGTGCCCTGAATCGCAGAAGCAG-GGCAGCTGCCCAGCA--CGTGCCAG---CGGAGGGAGCAGGGG-------------GTGGCAGGAGGA-------------------CCCGACCACG---GCCC--CTCTGCCCGCGCTGGGCAG-----CAGAGCGGAGCCTGT----GGTGCGAGTGGGGGTGCCAGGGCCAGTGCGTGG-CCCCCATGG---CTCACTGCTGTCCCCAGTAAAAGCGCAG------------GTGGAATTTGTCGACTTTCCTTGCCTT--ACCCTCACGTAGGGTTGAAA--CCTGTGTGGTTTGT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2032231 270 + 64289059 -----CTTTTCCTCTCCTGAA-A--AGCCACTGTAGGAGCTGCTGTGCA--CACCTGAG-TCTGAAGGGAGCCAAGAAACCCCACGTGGGGGGGCAGGAGGAAGGTGCACCGTGGGTCCCCTCTGCCCGCACTGGATCACCTCTACCCATGC----TGG-----GTCCCCTGTGCCCACACCAGCTCCATGCAG--------------AGGGGCGG-ATGTGGGGA--CGAGCC---------------TAGCCCAG------------GCTCAGTTTCTGCACTCTCTCGTCCCCTACCCCCCGCCTCATCTCTGAACACCCATATTTGTTGT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 559283 280 + 2232271 ATATGTTCCC-----CTGGAA-AGCAGTAGCAGTGGGAGCAACTCTGGAAGCATAAGAGATTTGAGGACAGCTAAGAAATCATGTTTGTTGAAGTGGAATTG-------------------TTTAACTGGA---ATTCATCCTAATCTGCTC----TTGGCCTCTAGCCTAGAACCTCG---ATATGCCTGTGG---------TTCCAATGTTTGGATGCCCAAAGTTCCCCAC---TATCCTCTATAAAAGTTGGGAGAAAGGTAATAGCAGAATTTCTTCACTTTCCTTTTCTTTAGCCCCCA-------TTTAAATGTCTGTATTGTTTTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2640843 350 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e saiBol1.JH378218 3099370 18 - 7082604 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e cebCap1.NW_016107454v1 585461 16 + 5243153 I e aotNan1.NW_018507213v1 1920371 15 - 1938448 I e calJac3.chr14 3446094 17 - 108792865 I a score=29115.000000 s hg38.chr2_KI270769v1_alt 45825 3 + 120616 AAA s panTro5.chr2A 3505622 3 + 111504155 AAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368343 3 + 114371477 AAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244635 3 + 637652 AAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040079 3 + 81552678 AAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3302740 3 + 108979918 AAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015513 3 - 111193037 AAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409365 3 + 3644372 AAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364605 3 - 10304083 AAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447318 3 - 107702431 AAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997348 3 + 1565135 AAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352727 3 - 13651311 AAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446111 2 - 108792865 -AA i calJac3.chr14 I 17 I 1 s otoGar3.GL873658 2528893 3 + 5252280 AAA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2032501 3 + 64289059 AGA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 559563 3 + 2232271 AAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2640843 350 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e saiBol1.JH378218 3099370 18 - 7082604 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I e cebCap1.NW_016107454v1 585461 16 + 5243153 I e aotNan1.NW_018507213v1 1920371 15 - 1938448 I a score=13923.000000 s hg38.chr2_KI270769v1_alt 45828 1 + 120616 A s panTro5.chr2A 3505625 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368346 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244638 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040082 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3302743 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015516 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409368 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364608 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447321 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997351 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352730 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446114 1 - 108792865 A i calJac3.chr14 I 1 C 0 s cebCap1.NW_016107454v1 585477 1 + 5243153 A i cebCap1.NW_016107454v1 I 16 C 0 s aotNan1.NW_018507213v1 1920386 1 - 1938448 A i aotNan1.NW_018507213v1 I 15 C 0 s otoGar3.GL873658 2528896 1 + 5252280 A i otoGar3.GL873658 C 0 I 1 s canFam3.chr17 2032504 1 + 64289059 A i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 559566 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2640843 350 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e saiBol1.JH378218 3099370 18 - 7082604 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=899133.000000 s hg38.chr2_KI270769v1_alt 45829 112 + 120616 GGGTAGA-AGTAGCA--AGGAAACAATATATATCTAATGAGGGACA-TTTTCC-TGTGTGATATGTAATGAATGCACTATATGTAGTACTAATTACCTGTTATAATGAAGGCACTGT s panTro5.chr2A 3505626 112 + 111504155 GGGTAGA-AGTAGCA--AGGAAACAATATATATCTAATGAGGGACA-TTTTCC-TGTGTGATATGTAATGAATGCACTATATGTAGTACTAATTACCTGTTATAATGAAGGCACTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368347 112 + 114371477 GGGTAGA-AGTAGCA--AGGAAACAATATATATCTAATGAGGGACA-TTTTCC-TGTGTGATATGTAATGAATGCACTATATGTAGTACTAATTACCTGTTATAATGAAGGCACTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244639 112 + 637652 GGGTAGA-AGTAGCA--AGGAAACAATATATATCTAATGAGGGACA-TTTTCC-TGTGCGGTATGTAATGAATGCACTATATGTAGTACTAATTACCTGTTATAATGAAGGCACTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040083 112 + 81552678 GGGTAGA-GGTAGCA--AGGAAACAATATCTATCTAATGAGGGACA-TTTTCC-TGTGTGATATGTAATGAATGCACTGGATGTAGTACTGATTACCTGTTATAATGAAGGCACTGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3302744 112 + 108979918 GGGTGGA-GGTAGCA--AGGAAACAATATATATCTAATGAGGGACA-TTTTCC-TGTGTGATATGTAATGAATGTGCTATATGTAGTACTGATTACCTGTTATAATTAAGGCAGCGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015517 112 - 111193037 GGGTGGA-GGTAGCA--AGGAAACAATATTTATCTAATGAGGGACA-TTTTCC-TGTGTGATATGTAATGAATGTGCTATATGTAGTACTGATTACCTGTTATAATTAAGGCAGCGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409369 112 + 3644372 GGGTGGA-GGTAGCA--AGGAAACAATATATATCTAATGAGGGACA-TTTTCC-TGTGTGATATGTAATGAATGTGCTATATGTAGTACTGATTACCTGTTATAATTAAGGCAGCGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364609 112 - 10304083 GGGTAGA-GGTAGCA--AGGAAACAATATATATCTAATGAGGGACA-TTTTCC-TGTGTGATATGTAATGAATGTGCTATATGTAGTACTGATTACCTGTTATAATTAAGGCAGCGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447322 112 - 107702431 GGGTGGA-GGTAGCA--AGGAGACAATATATATCTAATGAGGGACA-TTTTCC-TGTGTGATATGTAATGAATGTGCTATATGTAGTACTGATTACCTGTTATAATTAAGGCAGCAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997352 112 + 1565135 GGGTGGA-GGTAGCA--AGGAAACAATATATATCTAATGAGGGACA-TTTTCC-TGTGTAATATGTAATGAATGTGCTATATGTAGTACTGATTACCTGTTATAATTAAGGCAGCGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352731 112 - 13651311 GGGTAGA-GGTAGCA--AGGAAACAATATATATCTAATGAGGGACA-TTTTCC-TGTGTGACATGTAATGAATGTGCTATACGCAGTACTGATTACCTGTTATAATTAAGGCAGTGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446115 83 - 108792865 GGGTAGA-GGCAGTA--AGGAAACAATGTATACCTCGTGAAGGACG-TTTTCC---TGTGGTGTGTAGTGACTGTACTAGATGTGGTACT--------------------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099388 85 - 7082604 GGGTAGA-GGCAGTG--AGGAAACAATACGTACCTAGCAAAGGACA-TTTTCC-TGTGTGGTATGTAATGAATGCACTAGATGTGGTACT--------------------------- i saiBol1.JH378218 I 18 C 0 s cebCap1.NW_016107454v1 585478 85 + 5243153 GGGTAGA-GGCAGTG--AGGAAACAATATATACCTAGTGAAGGACA-TTTTCC-TGTGTGGTATGTAATGAATGCACTAGATGTGGTACT--------------------------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920387 85 - 1938448 GGGTAGA-GGCAGTA--AGGAAACAATACATACCTAGTGAAGGACA-TTTTCC-TGTCTGGTACATAGCGAATGCACTAGATGTAGTACT--------------------------- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2528898 74 + 5252280 GGAAGGA-GACAGCA--GGAAACCGATGT----CACAAGGTGGACG-TCGTCT-CACAGGACGTCTGGTGAATGCACTTCATG---------------------------------- i otoGar3.GL873658 I 1 C 0 s canFam3.chr17 2032505 70 + 64289059 ----AGA-GCAGGCGATAGGAAACAACATGCAACTAAGGAGGGAGACTTCTGT-TGTGCCTCACATGATGGATATT----------------------------------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 559567 71 + 2232271 GGGTAGGCGATATTT--AGGAAACAGG------CTATCCAAGGACA-TTTTCCTTACATGATGTATAATGA--GCAATATAT----------------------------------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2640843 350 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=686131.000000 s hg38.chr2_KI270769v1_alt 45941 60 + 120616 ATAGTACCGATTACCTGTTTTAATTTGATCCTAAGGAAGGTCAATGTGCATTTTGAGGC-A s panTro5.chr2A 3505738 60 + 111504155 ATAGTACCGATTACCTGTTTTAATTTGATCCTAAGGAAGGTCAATGTGCATTTTGAGGC-T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368459 60 + 114371477 ATAGTACCGATTACCTGTTTTAATTTGATCCTAAGGAAGGTCAATGTGCATTTTGAGGC-A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244751 60 + 637652 ATAGTACTGATTACCTGTTTTAATTTGATCCTAAGGAAGGTCAATGTGCATTTTGAGGC-A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040195 60 + 81552678 ATAGTACCGATTGCCTGTTTTAATTTGATCCTAAGGAAGGTCAGTGTGCATTTTGAGAC-A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3302856 60 + 108979918 ATACTACTGATTACCTGTTTTAATTTGATCCTAAGGAAGGTCAGTGTGCATTTTGAGAC-A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015629 60 - 111193037 ATACTACTGATTACCTGTTTTAATTTGATCCTAAGGAAGGTCAGTGTGCATTTTGAGAC-A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409481 60 + 3644372 ATACTACTGATTACCTGTTTTAATTTGATCCTAAGGAAGGTCAGTGTGCATTTTGAGAC-A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364721 60 - 10304083 ATACTACTGATTACCTGTTTTAATTTGATCCTAAGGAAGGTCAGTGTGCATTTTGAGAC-A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447434 60 - 107702431 ATACTACTGATTACCTGTTTTAATTTGATCCTAAGGAAGGTCAGTGTGCATTCTGAGAC-A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997464 60 + 1565135 ATACTGCTGATTACCTGTTTTAATTTGATCCTAAGGAAGGTCAGTGTGCATTTTGAGAC-A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352843 60 - 13651311 ATACTACTGATGACCTGTTTTAATTTGATCCTAAGGAAGGTCAGTGTGCATTTTGAGAC-A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446198 50 - 108792865 --------GATTACCTGTTTGCATTTGACCCTGAGGAATGTC--TGTGCATTTCGAGAC-A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099473 52 - 7082604 --------GATTACCTGTTTTCATTTGATCCTAAGGAATGTCAGTGTGCATTTTGAGAC-A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585563 52 + 5243153 --------GATTACCTGTTTTCATTTGATCCTAAGGAATATCAGTGTGCATTTTGAGAC-A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920472 52 - 1938448 --------GATCACCCATTTTCATTTGATCCTAAGGAATGTCAGTGTGCATTTTGAGAC-A i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2641193 60 - 159902609 ATAGTACCGATGACGTGTTTTAATTTGATCCTAATGAGTTTAGATGTGCATTTTGAGACT- i micMur3.chr8 I 350 I 3 s otoGar3.GL873658 2528972 53 + 5252280 ---GTGCTGATGACACA--TTAGCTTGATCCTGAAGTGCTGAGCTGTGCA-TTGGAGCC-- i otoGar3.GL873658 C 0 I 4 s canFam3.chr17 2032575 60 + 64289059 GTAATACTGGCTGCCAGCTTTAATTTGACCCTAATGAACCAGGCTGTGCCTGTTGAGAC-A i canFam3.chr17 C 0 I 3 s dasNov3.JH580157 559638 60 + 2232271 ATAATACTGATTACATGTTTTAATTTGATCCTAATGAACTTGGATGTGCATTTAGACAC-A i dasNov3.JH580157 C 0 I 3 e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 950827 1879 + 1238772 I a score=491456.000000 s hg38.chr2_KI270769v1_alt 46001 35 + 120616 TTATAAAAATATAGTTGATATTAC-CTGATAACCTT s panTro5.chr2A 3505798 35 + 111504155 TTATAAAAATATAGTTGATATTAC-CTGATAACCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368519 35 + 114371477 TTATAAAAATATAGTTGATATTAC-CTGATAACCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244811 35 + 637652 TTATAAAAATATAGTTGATATTAC-CTGATAACCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040255 35 + 81552678 TTATAAAAATATAATTGATATTAC-CTGATAACCTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3302916 35 + 108979918 TTAGAAAAATATAATTGATATTAC-CTGATAACCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015689 35 - 111193037 TTAGAAAAATATAATTGATATTAC-CTGATAACCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409541 35 + 3644372 TTAGAAAAATATAATTGATATTAC-CTGATAACCTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364781 35 - 10304083 TTAGAAAAATATAATTGATATTAC-CTGATAACCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447494 35 - 107702431 TTAGAAAAATATAATTGATATTAC-CTGATAACCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997524 35 + 1565135 TTAGAAAAATATAATTGATATTAC-CTGATAACCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352903 35 - 13651311 TTAGAAAAATACAATTGATATTAC-CTGATAACCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446248 35 - 108792865 TTATGAAAATATCATTGTTATTGC-CTGATAACCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099525 35 - 7082604 TTATAAAAATATAATTGCTGTTAC-CTGATAACCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585615 35 + 5243153 TTATAAAAATATAATTGCTTTTAC-CTGATAACCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920524 35 - 1938448 TTATAAAAATATAATTGCTATTAC-CTGATAACCTT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2641256 35 - 159902609 TTATAAAAATATAAATGATATTGC-CGGATAACATT i micMur3.chr8 I 3 C 0 s proCoq1.NW_012151163v1 952706 35 + 1238772 TTATAAAAATATAAATGATACTGC-CTGATAACTTT i proCoq1.NW_012151163v1 I 1879 C 0 s otoGar3.GL873658 2529029 33 + 5252280 TTATAAAAACATAGACGATG-TGC-CTGACAAC-TC i otoGar3.GL873658 I 4 C 0 s canFam3.chr17 2032638 33 + 64289059 TCAGACAAATATAAATCGTG--AC-TTGACAGCCTT i canFam3.chr17 I 3 C 0 s dasNov3.JH580157 559701 36 + 2232271 TTATATAAATATAAGTGATACTGCTTTGACAACTTT i dasNov3.JH580157 I 3 I 427 e mm10.chr12 91415283 1115 - 120129022 I a score=767116.000000 s hg38.chr2_KI270769v1_alt 46036 50 + 120616 TGAGTTAGCGAATTTTAATTTCACATCAGTAAGGTACTGTTTT-------AGAGcag s panTro5.chr2A 3505833 50 + 111504155 TGAGTTAGCGAATTTTAATTTCACATCAGTAAGGTACTGTTTT-------AGAGcag i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368554 50 + 114371477 TGAGTTAGCGAATTTTAATTTCACATCAGTAAGGTACTGTTTT-------AGAGcag i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244846 50 + 637652 TGAGTTAGCGAATTTTAATTTCACATCAGTAAGGTACTGTTTT-------AGAGcag i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040290 50 + 81552678 TGAGTTAGCGAGTTTTAATTTCACATCAGTAAGGTACTGTTTT-------AGAGcag i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3302951 50 + 108979918 TGAGTTAGCGAATTTGAATTTCACATCAGTGAGGTACTGTTTT-------AGAGcag i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015724 50 - 111193037 TGAGTTAGCGAATTTTAATTTCACATCAGTGAGGTACTGTTTT-------AGAGcag i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409576 50 + 3644372 TGAGTTAGCGAATTTTAATTTCACATCAGTGAGGTACTGTTTT-------AGAGcag i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364816 50 - 10304083 TGAGTTAGCAAATTTTAATTTCACATCAGTGAGGTACTGTTTT-------AGAGcag i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447529 50 - 107702431 TGAGTTGGCGAATTTTAATTTCACATCAGTGAGGTACTGTTTT-------AGAGcag i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997559 50 + 1565135 TGAGTTAGCGAATTTTAATTTCACATCAGTAAGGTACTGTTTT-------AGAGcag i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352938 50 - 13651311 TGAGTTAGCGAATTTTAATTTCACATCAGTAAGGTACTGTTTT-------AGAGcag i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446283 57 - 108792865 TGAGTTAGTGAATTTTAATTTCACATCAGTGAGGTCCTGTTTTATGTTTTAGAGcag i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099560 57 - 7082604 TGAGTTAGTGAATTTCAATTTCACATCAGTGAGGTCCTGTTTTATGTTTTAGAGcag i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585650 57 + 5243153 TGAGTTAGTGAATTTTAATTTCACATCAGTAAGGTCCTGTTTTATGTTTTAGAGcag i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920559 57 - 1938448 TGAGTTAGTGAATTTTAATTTCACATCAGTGAGGTCCTGTTTTATGTTTCAGAGcag i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2641291 50 - 159902609 TGGGTTAGTGAATTTTAATTTCACATCAATAAGGTGATGTTTT-------AGAGCAg i micMur3.chr8 C 0 I 4950 s proCoq1.NW_012151163v1 952741 50 + 1238772 TGGGTTAGTGAATTTTAATTTCACATCAACGAGGTAATGTTTT-------AGAGcag i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2529062 50 + 5252280 TGGGCGGGTGAATTTTAATTTCACATCGACAAGGCAGTGCCTT-------GGAGCGG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2032671 50 + 64289059 GGAGTTAGTACACTTTAATCTCATGTCAGCGAGGTAAGGGTTC-------AGAGTAG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 560164 50 + 2232271 TAGGTTAGTAAATTTTACTTTCAAATCAATAAAATAATGATTT-------AGAGcac i dasNov3.JH580157 I 427 C 0 e mm10.chr12 91415283 1115 - 120129022 I a score=126882.000000 s hg38.chr2_KI270769v1_alt 46086 8 + 120616 tgcttct-c s panTro5.chr2A 3505883 8 + 111504155 tgcttct-c i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368604 8 + 114371477 tgcttct-c i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244896 8 + 637652 tgcttct-c i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040340 9 + 81552678 tgcttctcc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303001 8 + 108979918 tgcttct-c i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015774 8 - 111193037 tgcttct-c i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409626 8 + 3644372 tgcttct-c i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364866 8 - 10304083 tgcttct-c i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447579 8 - 107702431 tgcttct-c i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997609 8 + 1565135 tgcttct-c i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352988 8 - 13651311 tgcttct-c i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446340 8 - 108792865 tgcttct-c i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099617 8 - 7082604 tgcttct-c i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585707 8 + 5243153 tgcttct-c i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920616 8 - 1938448 tgcttct-c i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 952791 8 + 1238772 tgcttct-c i proCoq1.NW_012151163v1 C 0 I 511 s otoGar3.GL873658 2529112 8 + 5252280 TGCTTCC-C i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2032721 8 + 64289059 GGCTGCT-C i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 560214 8 + 2232271 tgcttct-c i dasNov3.JH580157 C 0 I 1 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I a score=772378.000000 s hg38.chr2_KI270769v1_alt 46094 74 + 120616 catctcagc-atgcacaggagtcacccagcctcttgtggagggcaggccc-tgatgcagcaggtctgggcagggcc- s panTro5.chr2A 3505891 74 + 111504155 catctcagc-atgcacaggagtcacccagcctcttgtggagggcaggccc-tgatgcagcagatctgggcagggcc- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368612 74 + 114371477 catctcagc-atgcacaggagtcacccagcctcttgtggagggcaggccc-tgatgcagcaggtctgggcagggcc- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244904 74 + 637652 catctcagc-atgcacaggagtcacccagcctcttgtggagggcaggccc-tgatgcagcaggtctgggcagggcc- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040349 74 + 81552678 catctcagc-ctgcacaggagtcacccagcctcttggggagggcaggccc-tgatgcagcaggtctgggcaggccc- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303009 74 + 108979918 catctcagc-atgcgcaggagtcacccagcctcttgtggtgggcaggccc-tgatgcagcaggtctgggcagggcc- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015782 74 - 111193037 catctcagc-gtgcgcaggagtcacccagcctcttgtggtgggcaggccc-tgatgcagcaggtctgggcagggcc- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409634 74 + 3644372 catctcagc-gtgcgcgggagtcacccagcctcttgtggtgggcaggccc-tgatgcagcaggtctgggcagggcc- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364874 74 - 10304083 catctcagc-gtgcgcaggagtcacccagcctcttgtggtgagcaggccc-tgatgcagcaggtctgggcagggcc- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447587 74 - 107702431 catctcagc-gtgcacaggagtcacccaggctcttgtggtgggcaggccc-tgatgcagcaggtctgggcagggcc- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997617 74 + 1565135 catctcagc-gtgcgcaggagtcacccagcctcttgtggtgagcaggccc-tgatgcagcaggtctgggcagggcc- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3352996 74 - 13651311 catctcagc-gtgcacaggaatcacccagcctcttgcggtgggcaggccc-tgatgcagcaggtctgggcagggcc- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446348 74 - 108792865 cattgcagc-gtgcacatgagtcacccagccacttacggagagcaggctc-ggacgcagcaggtctgggcagggcc- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099625 74 - 7082604 cattgcagc-gtgcacatgagtcacccagcctcttccggagagcaggctt-ggacacagcaggtctgggtggggcc- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585715 75 + 5243153 cattgcagc-gtgcacatgagtcacccagcctcttacagagagcaggctcttgacgcagcaggtctgggcagggcc- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920624 74 - 1938448 cattgcagc-atgcacacgagtcacccagcctcttacggagagcaggctc-gggcgcagcaggtctgggcagggcc- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2529120 56 + 5252280 -----CACC-CT-CACACAGACCACCCAGGATCCTGTGCAGTGCAGACGC-TGGTGCAGT------------GGTC- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2032729 73 + 64289059 CAGCTTACCTGTGCACTCAGGTCCCCCGGGC-CTTGTCGCAGGCGGGTTC-TGGCGCAGT-GGTCTGTGTGAGGCC- i canFam3.chr17 C 0 I 457 s dasNov3.JH580157 560223 62 + 2232271 aaccacaat-gtgcatactaattgcct-------------gagacgtcac-tgatgcagtaggtctggcttggggtc i dasNov3.JH580157 I 1 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 952799 511 + 1238772 I a score=273509.000000 s hg38.chr2_KI270769v1_alt 46168 24 + 120616 tgagactc-tgaagttctaacaagg s panTro5.chr2A 3505965 24 + 111504155 tgagactc-tgaagttctaacaagg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368686 24 + 114371477 tgagactc-tgaagttctaacaagg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 244978 24 + 637652 tgagactc-tgaagttctaacaagg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040423 24 + 81552678 tgagattc-tgaagttctaacaagg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303083 24 + 108979918 tgagattc-tgaagttctgacaagg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015856 24 - 111193037 tgagattc-tgaagttctgacaagg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409708 24 + 3644372 tgagattc-tgaagttctgacaagg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364948 24 - 10304083 tgagattc-tgaagttctgacaggg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447661 24 - 107702431 tgagattc-tgaagttctgacaagg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997691 24 + 1565135 tgagattc-tgaagttctgacaggg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3353070 24 - 13651311 tgagattc-tgaagttctgacaagg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446422 24 - 108792865 tgagattc-tcaagttctaacaagg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099699 24 - 7082604 tgagatcc-tcaagttctaacaagg i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585790 24 + 5243153 tgagattc-tcaagttctaacaagg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920698 24 - 1938448 tgagattc-tcaagttctaacaagg i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2529176 25 + 5252280 TGGGATTCTTTCAGTTCTAACAAAG i otoGar3.GL873658 C 0 I 913 s dasNov3.JH580157 560285 23 + 2232271 tgagagtc-tgca-tactaacaaga i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2032802 457 + 64289059 I e proCoq1.NW_012151163v1 952799 511 + 1238772 I a score=293786.000000 s hg38.chr2_KI270769v1_alt 46192 29 + 120616 gcacaggtgataagactgcagctggtcAG s panTro5.chr2A 3505989 29 + 111504155 gcacaggtgataagactgcggctggtcAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368710 29 + 114371477 gcacaggtgataagactgcagctggtcAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245002 29 + 637652 gcacaggtgataagactgcagctggtcAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040447 29 + 81552678 gcacaggtgataagactgcagctggtcGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303107 29 + 108979918 acacaggtgacaagactgcagctggtcGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015880 29 - 111193037 acacaggtgacaagactgcagctggtcGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409732 29 + 3644372 acacaggtgacaagactgcagctggtcGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3364972 29 - 10304083 acacaggtgacaagactgcagctggtcGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447685 29 - 107702431 acacaggtgacaagactgcagctggtcGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997715 29 + 1565135 acacaggtgacaagactgcagctggtcGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3353094 29 - 13651311 acacaggtgaCAAGACTGCAGGTAGCCGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446446 29 - 108792865 gcacaggcgataagcttgcagctggttgg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099723 29 - 7082604 gcacaggcgataagattgcagctggtcag i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585814 29 + 5243153 gcacaggcgataagattgcagctggtcag i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920722 29 - 1938448 gcgcaggcgataagattgcagctgatcag i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 560308 29 + 2232271 tcctgggtaatgaaaatgttgctggtcaa i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2032802 457 + 64289059 I e proCoq1.NW_012151163v1 952799 511 + 1238772 I e otoGar3.GL873658 2529201 913 + 5252280 I a score=139516.000000 s hg38.chr2_KI270769v1_alt 46221 12 + 120616 ---AATGTACCTTTA s panTro5.chr2A 3506018 12 + 111504155 ---AATGTACCTTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368739 12 + 114371477 ---AATGTACCTTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245031 12 + 637652 ---AATGTACCTTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040476 12 + 81552678 ---AATGTACCTTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303136 12 + 108979918 ---AATGTACCTTTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015909 12 - 111193037 ---AATGTACCTTTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409761 12 + 3644372 ---AATGTACCTTTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365001 12 - 10304083 ---AATGTACCTTTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447714 12 - 107702431 ---AATGTACCTTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997744 12 + 1565135 ---AATGTACCTTTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3353123 12 - 13651311 ---AATGTACCTTTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446475 12 - 108792865 ---aatgcaccttga i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099752 12 - 7082604 ---aatgcaccttga i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585843 12 + 5243153 ---aatgcaccttga i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920751 12 - 1938448 ---aatgcaccttga i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2033259 12 + 64289059 ---agtgcaccttga i canFam3.chr17 I 457 C 0 s dasNov3.JH580157 560337 15 + 2232271 aagactgtacattta i dasNov3.JH580157 C 0 I 4425 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 952799 511 + 1238772 I e otoGar3.GL873658 2529201 913 + 5252280 I a score=43400.000000 s hg38.chr2_KI270769v1_alt 46233 4 + 120616 ATCA s panTro5.chr2A 3506030 4 + 111504155 ATCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368751 4 + 114371477 ATCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245043 4 + 637652 ATCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040488 4 + 81552678 ATCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303148 4 + 108979918 ATCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015921 4 - 111193037 ATCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409773 4 + 3644372 ATCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365013 4 - 10304083 ATCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447726 4 - 107702431 ATCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997756 4 + 1565135 ATCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3353135 4 - 13651311 ATCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446487 4 - 108792865 atca i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099764 4 - 7082604 atca i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585855 4 + 5243153 atca i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920763 4 - 1938448 atca i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2033271 4 + 64289059 acag i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 952799 511 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2529201 913 + 5252280 I a score=325352.000000 s hg38.chr2_KI270769v1_alt 46237 25 + 120616 AGTATTAATATTACTCTTTCAGCTA s panTro5.chr2A 3506034 25 + 111504155 AGTATTAATATTACTCTTTCAGCTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368755 25 + 114371477 AGTATTAATATTACTCTTTCAGCTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245047 25 + 637652 AGTATTAATATTACTCTTTCAGCTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040492 25 + 81552678 AGTATTAATATTACTCTTTCAGCTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303152 25 + 108979918 AGTATTAATATTACTCTTTCAGCTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015925 25 - 111193037 AGTATTAATATTACTCTTTCAGCTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409777 25 + 3644372 AGTATTAATATTACTCTTTCAGCTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365017 25 - 10304083 AGTATTAATATTACTCTTTCAGCTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447730 25 - 107702431 AGTATTAATATTACTCTTTTAGCTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997760 25 + 1565135 AGTATTAATATTACTCTTTCAGCTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3353139 25 - 13651311 AGTATTAATATTACTCTTTCAGCTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446491 25 - 108792865 agCATTAATACTACTCTTTCCGCTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099768 25 - 7082604 agTATTAATATTACTCTTTCAGCTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585859 25 + 5243153 agTATTAATATTACTCTTTCACCTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920767 25 - 1938448 agTATTAATATTACTCTTTCAGCTA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 953310 23 + 1238772 agtattaatatta--ctttcagcta i proCoq1.NW_012151163v1 I 511 C 0 s canFam3.chr17 2033275 25 + 64289059 agtactgatattactctttcaacta i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2529201 913 + 5252280 I a score=1497058.000000 s hg38.chr2_KI270769v1_alt 46262 124 + 120616 CAGCTGGCCACTATATTTAATAGTATTTCTGA-G-AAAAAAAATACATATTTTAAGTCTCAATTTGAGATCCCAAGAACACAGTCCTTC------------ACCCCAAAGAAATGGATCTGATTTTATCTTTTTTCAT s panTro5.chr2A 3506059 125 + 111504155 CAGCTGGCCACTATATTTAATAGTATTTCTGACA-AAAAAAAATACATATTTTAAGTCTCAATTTGAGATCCCAAGAACACAGTCCTTC------------ACCCCAAAGAAATGGATCTGATTTTATCTTTTTTCAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368780 124 + 114371477 CAGCTGGCCACTATATTTAATAGTATTTCTGA-C-AAAAAAAATACATATTTTAAGTCTCAATTTGAGATCCCGAGAACACAGTCCTTC------------ACCCCAAAGAAATGGATCTGATTTTATCTTTTTTCAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245072 124 + 637652 CAGCTGGCCACTATATTTAATAGTATTTCTGA-G-AAAAAAAATACATATTTTAAGTCTCAATTTGAGATCCCGAGAACACAGTCCTTC------------ACCCCAAAGAAATGGATCTGATTTTATCTTTTTTCAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040517 123 + 81552678 CAACTGGCCACTATATTTAATAGTATTTCTGA---GAAAAAAATACATATTTCAAGTTTCAATTTGAGATCCCAAGAACACAGTCCTTT------------ACCCCAAAGAAGTGGATCTGATTTTATCTTTTCTCAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303177 124 + 108979918 TAGCTGGCCACTATATTTAATAGTATTTCTGA-C-AAAAAAAATACATATTTTAAGTTTCAATTTGAGATCCCAAGAACACAGTCCTTC------------ACCCCAAAGAAATGGATCTGATTGTATCTTTTTTCAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5015950 124 - 111193037 TAGCTGGCCACTATATTTAATAGTATTTCTGA-C-AAAAAAAATACATATTTTAAGTTTCAATTTGAGATCCCAAGAACACAGTCCTTC------------ACCCCAAAGAAATGGATCTGATTTTATCTTTTTTCAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409802 124 + 3644372 TAGCTGGCCACTATATTTAATAGTATTTCTGA-C-AAAAAAAATACATATTTTAAGTTTCAATTTGAGATCCCAAGAACACAGTCCTTC------------ACCCCAAAGAAATGGATCTGATTTTATCTTTTTTCAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365042 124 - 10304083 CAGCTGGCCACTATATTTAATAGTATTTCTGA-C-CAAAAAAATACATATTTTAAGTTTCAATTTGAGATCCCAAGAACACAGTCCTTC------------ACCCCAAAGAAATGGATCTGATTTTATCTTTTTTCAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447755 124 - 107702431 CAGCTGGCCACTATATTTAATAGTATTTCTGA-C-AAAAAAAATTAATATTTTAAGTTTCAATTTGAGATCCCAAGAACACAGTCCTTC------------ACCCCAAAGAAATGGATCTGATTTTATTTTTTTTCAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997785 124 + 1565135 CAGCTGGCCACTATATTTAATAGTATTTCTGA-C-AAAAAAAATACATATTTTAAGTTTCAATTTGAGATCCCAAGAACACAGTCCTTC------------ACTCCAAAGAAATGGATCTGATTTTATCTTTTTTCAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3353164 124 - 13651311 CAGCTGGCCACTATATTTAATAGTATTTCTGA-C-AATAAAAATACATATTTTAAGTTTCAATTTGAGATCCCAAGAACACAGTCCTTC------------ACCCCAAAGAAATGGATCTGATTTTATCTTTTTTCAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446516 124 - 108792865 CAGCTGGCCACTATATTTAATAGTATTTCTGA-GAAAAAAAAATATAT-TTTTAAGTTCCATTTTGAGATCCCAAGAACACAGTTCTTC------------CCTTCAAAGATGTAGGTCTGATTTTATCTATTTTCAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099793 124 - 7082604 CAGctggccactatatttaatagtatttctga-g-aaaaaatgtatatattttaagttccaatttgagatctcaagaacacagtccttc------------ccCTCAAAGATATGGATCTGATTTTATCTGTTTTCAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 585884 124 + 5243153 CAGCTGGCCACTATATTTAATAGTATTTCTGA-G-AAAATATATATATATTTTAAGTTCCAATTTGAGATCCCAAGAACACAGTCCTTC------------CCCTCAAAGATGTGGATCTGATTTTATCTATTTTCAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920792 124 - 1938448 CAGctggccactatatttaatagcatttctga-g-aaaaaatatgcatattttaagttccaatttgagatcccaagaacacagtccttc------------ccCTCAAAGATGTCGATCTGATTTTATCTATTTTCAT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 953333 129 + 1238772 cagctggtcactatattttataatatttc--a-a-agaaaaaatacatattttaagttcgaatttgaga-tctaagaac--agtctttc--cccaccctatccccgaaagGAATGGATCTGATTTTATCTTTTTTCAT i proCoq1.NW_012151163v1 C 0 I 4144 s otoGar3.GL873658 2530114 131 + 5252280 CAGCTAGTCACTACACGTGATAATGTTTC--A-A-AGAGAAAATACTTATTTAAAGTTCCAGTTTGTTAGCCTAAAAACA-AGTCTCTC--CCCTGCCCATCCCCAATAGGAATTGATCTGATCTTATCATTTTTCCT i otoGar3.GL873658 I 913 I 1 s canFam3.chr17 2033300 128 + 64289059 taactagctaccatatttagt--tatttctaa-g-aaaaaa------tatttttaattccaatttgagatccccaaaacacagtcttTTTTTTTTTTCCCTCCCCTTAAGGAATGGATCTAATTTTGTCTTTTTTCCT i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e dasNov3.JH580157 560352 4425 + 2232271 I a score=508957.000000 s hg38.chr2_KI270769v1_alt 46386 45 + 120616 GTGGCA------ATCCCCATATCTGAACCATGCTCATTAAAAACTCCATTT s panTro5.chr2A 3506184 45 + 111504155 GTGGCA------ATCCCCATATCTGAACCATGCTCATTAAAAACTCCATTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368904 45 + 114371477 GTGGCA------ATCCCCATATCTGAACCATGCTCATTAAAAACTCCATTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245196 45 + 637652 GTGGCA------ATCCCCATATCTGAACCACGCTCATTAAAAACTCCATTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040640 45 + 81552678 GTGGCA------ATCCCCATATCTGAACCACGCTCATTAAAAACTCCATTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303301 45 + 108979918 GTGGCA------GCCCCCATATTTGAACCACGCTCATTAAAAACTCCATTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016074 45 - 111193037 GTGGCA------GCCCCCATATTTGAACCACGCTCATTAAAAACTCCATTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409926 45 + 3644372 GTGGCA------GCCCCCATATTTGAACCACGCTCATTAAAAACTCCATTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365166 45 - 10304083 GTGGCA------GCCCCCATATTTGAACCACGCTCATTAAAAACTCCATTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447879 45 - 107702431 GTGGCA------GCCCCCATATTTGAACCACGCTCATTAAAAACTCCATTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997909 45 + 1565135 GTGGCA------GCCCCCATATTTGAACCACGCTCATTAAAAACTCCATTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3353288 45 - 13651311 GTGGCA------GTCCCCATATTTGAACCACGCTCATTAAAAACTCCATTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446640 45 - 108792865 GTGGCA------ATCCCCATATCCAAACCATGTTCATTAAAAACTCCATTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099917 45 - 7082604 GTGGCA------ATCCCCATATCCAAACCATGTTCATTAAAAACTCCATTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586008 45 + 5243153 GTGGCA------ATGCCCATATCCAAACCATGCTCATTAAAAACTCCATTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920916 45 - 1938448 GTGGCA------ATCCCCATATCCAAACCATGTTCATTAAAAACTCCATTT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2530246 50 + 5252280 GTAGCAAGTAGCATCCACCTACGTCAACTGTGCTTATT-AAAACTCCATTT i otoGar3.GL873658 I 1 I 290 s canFam3.chr17 2033428 45 + 64289059 GTGGCT------TTCTACATACCCCATCAGTGTTTATTAAAAATTATATTT i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I a score=2610716.000000 s hg38.chr2_KI270769v1_alt 46431 270 + 120616 TCCATCTAATACCTTGGAGACACCATCTTTATTGTATACTAAAGTATATATGTA------------TTCCCT------------TTTTGTA------------Atttacagaaaaatcgagt---------agagagttctatataccctcttttcttct--gcacagtttttaataacatcttgcatttttattattaataagtataaaaattttgcattagcgtagaacttttattataattgataaaccaat---agcggtacattgttgttaaagtacatagtttaccttagggctcactcttggtgttgtccctt s panTro5.chr2A 3506229 270 + 111504155 TCCATCTAATACCTTGGAGACACCATCTTTATTGTATACTAAAGTATATATGTA------------TTCCCT------------TTTTGTA------------Atttacagaaaagtcgagt---------agagagttctatataccctcttttcttct--gcacagtttttaataacatcttgcatttttattattaataagtataaaaattttgcattagcgtagaacttttattataattgataaaccaat---ggcggtacattgttgttaaagtacatagtttaccttagggctcactcttgctgttgtccatt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3368949 270 + 114371477 TCCATCTAATACCTTGGAGACACCATCTTTATTGTATACTAAAGTATATATGTA------------TTCCCT------------TTTTGTA------------Atttacagaaaaatcgagt---------agagagttctatataccctcttttcttct--gcacagtttttaataacatcttgcatttttattattaataagtataaaaattttgcattagcgtagaacttttattataattgataaaccaat---ggcggtacattgttgttaaagtacatagtttaccttagggctcactcttgctgttgtccatt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245241 270 + 637652 TCCATCTAATACCTTGGAGACACCATCTTTATTGTATACTAAAGTATATATGTA------------TTCCCT------------TTTTGTA------------Atttacagaaaaatcgagt---------agagagttctatataccctcttttcttct--gcacagtttttaataacatcttgcatttctattattaataagtataaaaattttgcattagcgtagtacttttattataattgataaaccaat---agcagtacattgttgttaaagtacatagtttaccttagggctcactcttgctgttgtccatt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040685 279 + 81552678 TCCATCTAATACCTTGGAGACACCATCTTTATTGTATACTAAAGTATATGTGTAGTTGGGTTTATCTTCCCT------------TTTTGTA------------Atttacagaaaaatcgagt---------agagagttctatataccctcttttcttct--gcacagtttttaataacatcttgcattt---ttattaataagtataaaaattttgcattagcgtagtacttttgttataattgataaaccagt---atcggtacattgttgttaaagtacatagtttacgttagggttcactcttgctgttgtccatt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303346 276 + 108979918 TCCATCTAATACGTCGGAGAGACCATCTTTATTATATTTTGAATTATATGTGTAGTTAGGTTTATCTTCCCT------------TTTTGTA------------Atttacagaaaaatcgagt-----------agagttccatataccctc-tttcttct--gcacaatttttaataacatattgcattt---ttactagtaagtaaaaaaattttgcattagcacagtacttttattataattgataaaccaat---atcggtacattgttattaaagtacatagtttaccttagggttcactctgtgggttgtccatt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016119 276 - 111193037 TCCATCTAATACGTCGGAGAGACCATCTTTATTATATTTTAAATTATATGTGTAGTTAGGTTTATCTTCCCT------------TTTTGTA------------Atttacagaaaaatcgagt-----------agagttccatataccctc-tttcttct--gcacaatttttaataacatcttgcattt---ttactagtaagtaaaaaaattttgcattagcacagtacttttattataattgataaaccaat---atcggtacattgttattaaagtacatagtttaccttagggttcactctgtgggttgtccatt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3409971 276 + 3644372 TCCATCTAATACGTCGGAGAGACCATCTTTATTATATTTTAAATTATATGTGTAGTTAGGTTTATCTTCCCT------------TTTTGTA------------Atttacagaaaaatcgagt-----------agagttccatataccctc-tttcttct--gcacagtttttaataacatcttgcattt---ttactagtaagtaaaaaaattttgcattagcacagtacttttattataattgataaaccaat---atcagtacattgttattaaagtacatagtttaccttagggttcactctgtgggttgtccatt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365211 271 - 10304083 TCCATCTAATACGTCGGAGAGACCATCTTTATTATATTTTAAATTATATGTGTAATTAGGTTTATCTTCCCT------------TTTTGTA------------Atttacagaaaaatcgagt-----------agagttccatataccctc-tttcttct--gcacagtttttaataacatcttgcattt---t-----acaagtaaaaaaattttgcattagcatagtacttttattataattgataaaccaat---atcggtacattgttattaaagtacatagtttaccttagggttcactctgtgggttgtccatt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3447924 276 - 107702431 TCCATCTAATACCTCGGAGAGACCATCTTTATTATATTTTAAATTATATGTGTAGTTAGGTTTATCTTCCCT------------TTTTGTA------------Atttacagaaaaatagagt-----------agagttccatataccctc-tatcttct--gcacagtttttaataacatcttgcattt---ttattaataagtataaaaattttgcattagcatagtacttttgttataattgataaaccaat---atcggtacattgttattaaagtacatagtttaccttagggttcactctgtgggttgtccatt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 997954 276 + 1565135 TCCATCTAATACGTCGGAGAGACCATCTTTATTATATTTTAAATTATATGTGTAGTTAGGTTTATCTTCCCT------------TTTTGTA------------Atttacagaaaaatcgagt-----------agagttccatataccctc-tttcttct--gcacagtttttaataacatcttgcattt---ttactagtaagtaaaaaaattttgcattagcatagtacttttattataattgataaaccaat---atcggtacattgttattaaagtacatagtttaccttagggttcactctgtgggttgtccatt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3353333 273 - 13651311 TCCATCTAATACCTCGGAGAGACCATCTTTATTGTATATTAAATTATATATGTAGTTAGGTTTATCTTCCCT------------TTTTGTA------------Atttacagaagaatcgagt-----------agagttccatataccctc-tttctt-----cacagtttttaataacatcttgcattt---ttattaataagtataaaaattttgcattagcatagtacttttattataattgataaaccaat---atcggtacattgttgttaaactacatagtttaccttagggttcactctgtgggttgtccatt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446685 272 - 108792865 TCCATCTAAT-----GGAGACACCATCTTTATTGTACACTAAATTATATACATAGTTGGGTTTATCTTTCCT------------TTTTGTA------------Atttacagaaaaatggagt---------agagagttccatataccctcttttcttctacacacagttttaaataacatcttgcattt---ttattaatagctataaacatttt-tatttgcagagtacttttattttaattgataaagcaat---atcagtacattgttattaaagtacatagtttaccttagggttcgctct---tgctgttcatt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3099962 272 - 7082604 TCCATCTAATGTCTGGGAGACACCATCTTTATTGTATACTAAATTATATACATAGTTGGGTTTATTGCTCCT------------Ttttgaa------------atttatagaaaaatcgagt---------agagagttccatataccctcttttcttctacacacagtttttaataacatcttgcattt---ttattaatatctataaaaatttt-tatttgcggagtac-----ttttaattgataaatcaat---atcagtacattgttattaaagtacatagtttaccttagggttggcttt---tgctgttcatt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586053 278 + 5243153 TCCATCTAATGCCTGGGAGACACCATCTTTATTGTATATTAAATTATATACATAGTTGGGTTTATCTTTCCT------------TTTTGTA------------Atttacagaaaaatcgagt---------agagagttccatataccctcttttcttctacacacagtttttaataacatcttgcattt---ttattaatatctataaaaatttt-ta-ttgcagagtactcttattttaattgataaaccaatatcatcagtacattgttattaaagtacatagtttacctta-ggttcactct---tgctgttcatt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1920961 277 - 1938448 TCCATCTAATGCCTGGGAGATACCATCTTTATTGTATACTAAATTATATACATAGTTGGGTTTATCTTTCCT------------TTTTGTA------------Atttacagaaaaatcgagt---------agagagttccatataccctcttttcttctacacacagtttttaataacatcttgcattt---ttattaatatctataaaaatttt-tatttgtagagtacttttattttaattgataaaccaat---atcagtacattgttattaaagtacatagtttaccttagggttcgctct---tgctgctgtct i aotNan1.NW_018507213v1 C 0 I 1339 s otoGar3.GL873658 2530586 256 + 5252280 TCATTCCAATACTTTGG-GATGCCACCTTTATCGTGTCCTAAAGTGTATATGCAGT--------------CT------------TGTTTTT------------AAATATACAAAATTAGAGC---------AGAGAGTTCCATATATTC---TTTGTTCC--TCATGGTTTTTACTAACATCTCATG------TTACTGATACCtattaacattttgca-gggtgggggacgtttattacagttggtaaaccagt---at-ggctcactgatatcaatgtctgtaggtgacattagggttcactcttggtcctgtacatt i otoGar3.GL873658 I 290 C 0 s canFam3.chr17 2033473 299 + 64289059 TCCTTTCAATGATTTGGGGATACTGTCTCTCTTATACAGTAAATTCTGGGTGCAGTTGGGCTTCTCTTTTCTTCATAATAtttattttttaggatcccttcaggtttacagaaaagttgaacacataatacagagagttccatataccttc-tcttttgc--atacagtttttattaatatcttatattttgattattaacatttgttaacatcttgcatttgtgtgggacatttgttataatag-------------agtgctatattattattaaaatccatcat-----ttagaactcactccaggtgttgtacatt i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I a score=306013.000000 s hg38.chr2_KI270769v1_alt 46701 33 + 120616 ctgtgggtttcaacaaattaatggcgttgcgtg s panTro5.chr2A 3506499 33 + 111504155 ctgtgggtttcaacaaattaatggcattgcgtg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369219 33 + 114371477 ctgtgggtttcaacaaattaatggcattgcgtg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245511 33 + 637652 ctgtgggtttcaacaaattaatggcgttgcgtg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040964 33 + 81552678 ctgtgggtttcaacaaattaatgacgttgcgtg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303622 33 + 108979918 ctgtgggtttcaacaaattaatgacattccgtg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016395 33 - 111193037 ctgtgggtttcaacaaattaatgacattccgtg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410247 33 + 3644372 ctgtgggtttcaacaaattaatgacattccgtg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365482 33 - 10304083 ctgtgggtttcaacaaattaatgacattctgtg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448200 33 - 107702431 ctgtgggtttcaacaaattaatgacattccgtg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 998230 33 + 1565135 ctgtgggtttcaacaaattaatgacattccgtg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3353606 33 - 13651311 ctgtgggtttcaacaaattaatgacattccgtg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446957 33 - 108792865 ctgtgggtttcaacaaattcctgatgtcgcatg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100234 33 - 7082604 ctgtgggtttcaacaaattcctgatgttgcatg i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586331 33 + 5243153 ctgtgggtttcaacaaattccttatgtcgcatg i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2530842 33 + 5252280 ctgtgggttttaagaaatgcagaatgtcgtgtG i otoGar3.GL873658 C 0 I 5314 s canFam3.chr17 2033772 33 + 64289059 ctttgagtctggacaaatggataatgacatgta i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I a score=329046.000000 s hg38.chr2_KI270769v1_alt 46734 41 + 120616 ---ttcattgtactgtcatgccgaatagtttcactgccctGTGT s panTro5.chr2A 3506532 41 + 111504155 ---ttcattgtactgtcatgctgaatagtttcactgccctGTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369252 41 + 114371477 ---ttcattgtattgtcatgctgaatagtttcactgccctGTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245544 41 + 637652 ---ttcattgtactgtcatgccgaatagtttcactgccctGTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3040997 41 + 81552678 ---ttcattgtagtgtcatgccgaatagtttcactgccctGTGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303655 41 + 108979918 ---ttcatcgtagtgtcatgcagaatagtttcactgccctGTGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016428 41 - 111193037 ---ttcatcgtagtgtcatgcagaatagtttcactgccctGTGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410280 41 + 3644372 ---ttcatcgtagtgtcatgcagaatagtttcactgccctGTGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365515 41 - 10304083 ---ttcatcgtagtgtcatgcagaatagtttcactgccctGTGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448233 41 - 107702431 ---ttcatcatagtgtcatgcagaatagtttcactgccctgtgt i chlSab2.chr14 C 0 I 53 s manLeu1.NW_012104432v1 998263 41 + 1565135 ---ttcaccgtagtgtcatgcagaatagtttcactgccctgtgt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3353639 41 - 13651311 ---ttcatcacagtgtcatgcagaatagtttcactaccctGTGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3446990 24 - 108792865 --------------------cagaacagtttcactgccctgtgt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100267 41 - 7082604 ---ttcgctgtagtgtcatacagaacagtttcactgccccgtgt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586364 41 + 5243153 ---ttcactgtagtgtcatacagaacagtttcactgccctgtgt i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2033805 42 + 64289059 tatacccttagaatatc-tgcaaggtagtttcactgccttaac- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I a score=43898.000000 s hg38.chr2_KI270769v1_alt 46775 6 + 120616 ATTAAT s panTro5.chr2A 3506573 6 + 111504155 ATTAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369293 6 + 114371477 ATTAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245585 6 + 637652 ATTAAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041038 6 + 81552678 ATTAAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303696 6 + 108979918 ATTAAT i rheMac8.chr13 C 0 I 1 s macFas5.chr13 5016469 6 - 111193037 ATTAAT i macFas5.chr13 C 0 I 1 s macNem1.NW_012011978v1 3410321 6 + 3644372 ATTAAT i macNem1.NW_012011978v1 C 0 I 1 s cerAty1.NW_012000820v1 3365556 6 - 10304083 ATTAAT i cerAty1.NW_012000820v1 C 0 I 1 s manLeu1.NW_012104432v1 998304 6 + 1565135 attaat i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3353680 6 - 13651311 ATTAAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3447014 6 - 108792865 atgaat i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100308 6 - 7082604 atgaat i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586405 6 + 5243153 atgaat i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2033847 6 + 64289059 atcatc i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e chlSab2.chr14 3448274 53 - 107702431 I a score=3133.000000 s hg38.chr2_KI270769v1_alt 46781 1 + 120616 C s panTro5.chr2A 3506579 1 + 111504155 C i panTro5.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245591 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041044 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303703 1 + 108979918 C i rheMac8.chr13 I 1 C 0 s macFas5.chr13 5016476 1 - 111193037 C i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3410328 1 + 3644372 C i macNem1.NW_012011978v1 I 1 C 0 s cerAty1.NW_012000820v1 3365563 1 - 10304083 C i cerAty1.NW_012000820v1 I 1 C 0 s manLeu1.NW_012104432v1 998310 1 + 1565135 c i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3353686 1 - 13651311 C i colAng1.NW_012118821v1 C 0 C 0 s canFam3.chr17 2033853 1 + 64289059 t i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e saiBol1.JH378218 3100314 0 - 7082604 C e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586411 0 + 5243153 C e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e calJac3.chr14 3447020 0 - 108792865 C e chlSab2.chr14 3448274 53 - 107702431 I e panPan2.chr2A 3369299 0 + 114371477 C a score=59064.000000 s hg38.chr2_KI270769v1_alt 46782 7 + 120616 --CCCCCAC s panTro5.chr2A 3506580 7 + 111504155 --CCCCCAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369299 7 + 114371477 --CCCCCAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245592 7 + 637652 --CCCCCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041045 7 + 81552678 --CCCCCAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303704 7 + 108979918 --CCCCCAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016477 7 - 111193037 --CCCCCAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410329 7 + 3644372 --CCCCCAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365564 7 - 10304083 --CCCCCAC i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 998311 7 + 1565135 --cccccac i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3353687 7 - 13651311 --CCCCCAC i colAng1.NW_012118821v1 C 0 T 14 s calJac3.chr14 3447020 7 - 108792865 --cccccac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100314 7 - 7082604 --cccccac i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586411 7 + 5243153 --ccccCAC i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2033854 7 + 64289059 ttcctcc-- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e chlSab2.chr14 3448274 53 - 107702431 I a score=11491.000000 s hg38.chr2_KI270769v1_alt 46789 3 + 120616 CAC s panTro5.chr2A 3506587 3 + 111504155 CAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369306 3 + 114371477 CAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245599 3 + 637652 CAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041052 3 + 81552678 CAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303711 3 + 108979918 CAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016484 3 - 111193037 CAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410336 3 + 3644372 CAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365571 3 - 10304083 CAG i cerAty1.NW_012000820v1 C 0 T 10 s manLeu1.NW_012104432v1 998318 2 + 1565135 ca- i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3447027 3 - 108792865 cac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100321 3 - 7082604 cac i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586418 3 + 5243153 CAC i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2033861 3 + 64289059 cac i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e chlSab2.chr14 3448274 53 - 107702431 I a score=33905.000000 s hg38.chr2_KI270769v1_alt 46792 6 + 120616 -CCCTGG s panTro5.chr2A 3506590 6 + 111504155 -CCCTGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369309 6 + 114371477 -CCCAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245602 6 + 637652 -CCCTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041055 6 + 81552678 -CCCTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303714 6 + 108979918 -CCCTGG i rheMac8.chr13 C 0 I 37 s macFas5.chr13 5016487 6 - 111193037 -CCCTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410339 6 + 3644372 -CCCTGG i macNem1.NW_012011978v1 C 0 C 0 s manLeu1.NW_012104432v1 998320 6 + 1565135 -ccctgg i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3447030 6 - 108792865 -ccctgg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100324 6 - 7082604 -ccctgg i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586421 6 + 5243153 -CCCTGG i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2033864 6 + 64289059 ccccca- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e chlSab2.chr14 3448274 53 - 107702431 I e cerAty1.NW_012000820v1 3365574 10 - 10304083 T a score=22836.000000 s hg38.chr2_KI270769v1_alt 46798 5 + 120616 ATTAA s panTro5.chr2A 3506596 5 + 111504155 ATTAA i panTro5.chr2A C 0 T 28 s panPan2.chr2A 3369315 5 + 114371477 ATTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245608 5 + 637652 ATTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041061 5 + 81552678 ATTAA i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5016493 5 - 111193037 ATTAA i macFas5.chr13 C 0 I 1 s macNem1.NW_012011978v1 3410345 5 + 3644372 ATTAA i macNem1.NW_012011978v1 C 0 I 1 s manLeu1.NW_012104432v1 998326 5 + 1565135 attaa i manLeu1.NW_012104432v1 C 0 I 2 s calJac3.chr14 3447036 5 - 108792865 attaa i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100330 5 - 7082604 attaa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586427 5 + 5243153 ATTAA i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2033870 5 + 64289059 cctgc i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e chlSab2.chr14 3448274 53 - 107702431 I e cerAty1.NW_012000820v1 3365574 10 - 10304083 T e rheMac8.chr13 3303720 37 + 108979918 I a score=-7464.000000 s hg38.chr2_KI270769v1_alt 46803 2 + 120616 --TA s panPan2.chr2A 3369320 2 + 114371477 --TA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245613 2 + 637652 --TA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041066 2 + 81552678 --TA i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3447041 1 - 108792865 --t- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100335 1 - 7082604 --c- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586432 1 + 5243153 --C- i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2033875 2 + 64289059 ca-- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998331 2 + 1565135 I e chlSab2.chr14 3448274 53 - 107702431 I e cerAty1.NW_012000820v1 3365574 10 - 10304083 T e macNem1.NW_012011978v1 3410350 1 + 3644372 I e macFas5.chr13 5016498 1 - 111193037 I e rheMac8.chr13 3303720 37 + 108979918 I e panTro5.chr2A 3506601 28 + 111504155 T a score=69342.000000 s hg38.chr2_KI270769v1_alt 46805 16 + 120616 -CCCCCA--TCACCCCTGG s panPan2.chr2A 3369322 15 + 114371477 --CCCCA--TCACCCCAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245615 15 + 637652 --CCCCA--TCACCCCTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041068 15 + 81552678 --CCCCA--TCACCCCTGG i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5016499 16 - 111193037 -CCCCCA--TCACCCCTGG i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3410351 16 + 3644372 -CCCCCA--TCACCCCTGG i macNem1.NW_012011978v1 I 1 C 0 s cerAty1.NW_012000820v1 3365564 16 - 10304083 -CCCCCA--CCAGCCCTGG i cerAty1.NW_012000820v1 T 10 C 0 s manLeu1.NW_012104432v1 998333 16 + 1565135 -ccccca--ccacccctgg i manLeu1.NW_012104432v1 I 2 C 0 s calJac3.chr14 3447042 16 - 108792865 -ccccca--ccacccctgg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100336 16 - 7082604 -ctccca--ccacccctgg i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586433 16 + 5243153 -CTCCCA--CCACCCCTGG i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2033877 19 + 64289059 ccccctaccccaccccagg i canFam3.chr17 C 0 I 5 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e chlSab2.chr14 3448274 53 - 107702431 I e rheMac8.chr13 3303720 37 + 108979918 I e panTro5.chr2A 3506601 28 + 111504155 T a score=38640.000000 s hg38.chr2_KI270769v1_alt 46821 7 + 120616 ATTAATC s panTro5.chr2A 3506573 7 + 111504155 ATTAATC i panTro5.chr2A T 28 C 0 s panPan2.chr2A 3369337 7 + 114371477 ATTAATA i panPan2.chr2A C 0 I 44 s gorGor5.CYUI01015435v1 245630 7 + 637652 ATTAATC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041083 7 + 81552678 ATTAATC i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5016515 7 - 111193037 ATTAATC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410367 7 + 3644372 ATTAATC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365580 7 - 10304083 ATTAATC i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 998349 7 + 1565135 attaatc i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3447058 6 - 108792865 attaa-c i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100352 7 - 7082604 attaatc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586449 7 + 5243153 ATTAATC i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2033901 7 + 64289059 actgatc i canFam3.chr17 I 5 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e chlSab2.chr14 3448274 53 - 107702431 I e rheMac8.chr13 3303720 37 + 108979918 I a score=3036.000000 s hg38.chr2_KI270769v1_alt 46828 1 + 120616 T s panTro5.chr2A 3506580 1 + 111504155 C i panTro5.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245637 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041090 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5016522 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410374 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365587 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 998356 1 + 1565135 c i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3447064 1 - 108792865 c i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100359 1 - 7082604 c i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586456 1 + 5243153 C i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2033908 1 + 64289059 c i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e chlSab2.chr14 3448274 53 - 107702431 I e rheMac8.chr13 3303720 37 + 108979918 I e panPan2.chr2A 3369344 44 + 114371477 I a score=12147.000000 s hg38.chr2_KI270769v1_alt 46829 2 + 120616 CC s panTro5.chr2A 3506581 2 + 111504155 CC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369388 2 + 114371477 CC i panPan2.chr2A I 44 C 0 s gorGor5.CYUI01015435v1 245638 2 + 637652 CC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041091 2 + 81552678 CC i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5016523 2 - 111193037 CC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410375 2 + 3644372 CC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365588 2 - 10304083 CC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448327 2 - 107702431 CC i chlSab2.chr14 I 53 C 0 s manLeu1.NW_012104432v1 998357 2 + 1565135 tc i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3447065 2 - 108792865 tc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100360 2 - 7082604 cc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586457 2 + 5243153 CC i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2033909 2 + 64289059 tt i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e rheMac8.chr13 3303720 37 + 108979918 I a score=9886.000000 s hg38.chr2_KI270769v1_alt 46831 2 + 120616 CC s panTro5.chr2A 3506583 2 + 111504155 CC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369390 2 + 114371477 CC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245640 2 + 637652 CT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041093 2 + 81552678 CC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303757 2 + 108979918 CC i rheMac8.chr13 I 37 C 0 s macFas5.chr13 5016525 1 - 111193037 -C i macFas5.chr13 C 0 I 1 s macNem1.NW_012011978v1 3410377 1 + 3644372 -T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365590 2 - 10304083 CC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448329 2 - 107702431 CC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 998359 2 + 1565135 cc i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3447067 2 - 108792865 cc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100362 2 - 7082604 tc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586459 2 + 5243153 CC i cebCap1.NW_016107454v1 C 0 C 0 s canFam3.chr17 2033911 2 + 64289059 tt i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T a score=10366.000000 s hg38.chr2_KI270769v1_alt 46833 2 + 120616 AC s panTro5.chr2A 3506585 2 + 111504155 AC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369392 2 + 114371477 AT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245642 2 + 637652 AC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041095 2 + 81552678 AC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303759 2 + 108979918 CC i rheMac8.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410378 2 + 3644372 AT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365592 2 - 10304083 AC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448331 2 - 107702431 AT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 998361 2 + 1565135 ac i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3447069 2 - 108792865 ac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100364 2 - 7082604 ac i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586461 2 + 5243153 AC i cebCap1.NW_016107454v1 C 0 T 52 s canFam3.chr17 2033913 2 + 64289059 ac i canFam3.chr17 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e macFas5.chr13 5016526 1 - 111193037 I a score=25076.000000 s hg38.chr2_KI270769v1_alt 46835 5 + 120616 TACCC s panTro5.chr2A 3506587 5 + 111504155 CACCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369394 5 + 114371477 CACCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245644 4 + 637652 TA-CC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041097 5 + 81552678 CACCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303761 5 + 108979918 CACCC i rheMac8.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410380 5 + 3644372 CACCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365594 5 - 10304083 CACCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448333 5 - 107702431 CACCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 998363 5 + 1565135 caccc i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3447071 5 - 108792865 caccc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100366 5 - 7082604 caccc i saiBol1.JH378218 C 0 C 0 s canFam3.chr17 2033915 5 + 64289059 tgtcc i canFam3.chr17 C 0 I 3023 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e macFas5.chr13 5016526 1 - 111193037 I a score=28017.000000 s hg38.chr2_KI270769v1_alt 46840 5 + 120616 CTGGA s panTro5.chr2A 3506592 5 + 111504155 CTGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369399 5 + 114371477 CAGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245648 5 + 637652 CTGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041102 5 + 81552678 CTGGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303766 5 + 108979918 CTGGA i rheMac8.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410385 5 + 3644372 CTGAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365599 5 - 10304083 CTGGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448338 5 - 107702431 CTGGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 998368 5 + 1565135 ctgga i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3447076 5 - 108792865 ctgGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100371 5 - 7082604 ctgGA i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e macFas5.chr13 5016526 1 - 111193037 I a score=5005.000000 s hg38.chr2_KI270769v1_alt 46845 1 + 120616 T s panTro5.chr2A 3506597 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369404 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245653 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041107 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303771 1 + 108979918 T i rheMac8.chr13 C 0 I 26 s macNem1.NW_012011978v1 3410390 1 + 3644372 T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365604 1 - 10304083 T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448343 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447081 1 - 108792865 T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100376 1 - 7082604 T i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macFas5.chr13 5016526 1 - 111193037 I a score=4095.000000 s hg38.chr2_KI270769v1_alt 46846 1 + 120616 T s panTro5.chr2A 3506598 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369405 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245654 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041108 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s macNem1.NW_012011978v1 3410391 1 + 3644372 T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365605 1 - 10304083 T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448344 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447082 1 - 108792865 T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100377 1 - 7082604 T i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macFas5.chr13 5016526 1 - 111193037 I e rheMac8.chr13 3303772 26 + 108979918 I a score=10010.000000 s hg38.chr2_KI270769v1_alt 46847 2 + 120616 AA s panTro5.chr2A 3506599 2 + 111504155 AA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369406 2 + 114371477 AA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245655 2 + 637652 AA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041109 2 + 81552678 AA i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5016527 2 - 111193037 AA i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3410392 2 + 3644372 AA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365606 2 - 10304083 AA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448345 2 - 107702431 AA i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447083 2 - 108792865 AA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100378 2 - 7082604 AA i saiBol1.JH378218 C 0 I 21 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e rheMac8.chr13 3303772 26 + 108979918 I a score=91593.000000 s hg38.chr2_KI270769v1_alt 46849 23 + 120616 TACCCCATCACCCCTGAATTAAT s panTro5.chr2A 3506601 23 + 111504155 TACCCCACCACCCCTGGATTAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369408 23 + 114371477 TACCCCACCACACCTGGATTAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245657 23 + 637652 TAGCCCATCACCCCTGGATTAAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041111 23 + 81552678 TACCCCATCACCCCTGAATTAAT i nomLeu3.chr19 C 0 I 1 s macFas5.chr13 5016529 23 - 111193037 TCCCCCATCACTCCTGGATTAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410394 23 + 3644372 TACCCCATCGCCCCTGGATTGat i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365608 23 - 10304083 TCCCCCGTCACCCCTGGATTAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448347 23 - 107702431 TCCCCTGTCACCCCTGGATTAAT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447085 23 - 108792865 CCTCCCACCACCCCTGGATTAAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100401 22 - 7082604 -CCCCCACCACCCCTGGATTAAC i saiBol1.JH378218 I 21 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e rheMac8.chr13 3303772 26 + 108979918 I a score=3600.000000 s hg38.chr2_KI270769v1_alt 46872 1 + 120616 C s panTro5.chr2A 3506624 1 + 111504155 C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369431 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245680 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5016552 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410417 1 + 3644372 c i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365631 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s calJac3.chr14 3447108 1 - 108792865 C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100423 1 - 7082604 C i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448370 0 - 107702431 C e rheMac8.chr13 3303772 26 + 108979918 I e nomLeu3.chr19 3041134 1 + 81552678 I a score=7512.000000 s hg38.chr2_KI270769v1_alt 46873 2 + 120616 CC s panTro5.chr2A 3506625 2 + 111504155 CC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369432 2 + 114371477 CC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245681 2 + 637652 CC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3303798 2 + 108979918 CC i rheMac8.chr13 I 26 I 1 s macFas5.chr13 5016553 1 - 111193037 -C i macFas5.chr13 C 0 I 1 s macNem1.NW_012011978v1 3410418 1 + 3644372 -c i macNem1.NW_012011978v1 C 0 I 1 s cerAty1.NW_012000820v1 3365632 2 - 10304083 CC i cerAty1.NW_012000820v1 C 0 I 1 s chlSab2.chr14 3448370 2 - 107702431 CC i chlSab2.chr14 C 0 I 1 s calJac3.chr14 3447109 2 - 108792865 TC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100424 2 - 7082604 CC i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e nomLeu3.chr19 3041134 1 + 81552678 I a score=91970.000000 s hg38.chr2_KI270769v1_alt 46875 19 + 120616 -CCC---ATCACCCCTGGATTAA s panTro5.chr2A 3506627 18 + 111504155 -CC----ATCACCCCAGGATTAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369434 18 + 114371477 -CC----ATCACCCCTGGATTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245683 18 + 637652 -CA----ATCACCCCTGGATTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041135 18 + 81552678 -CC----ATCGCCCCTGGATTAA i nomLeu3.chr19 I 1 C 0 s rheMac8.chr13 3303801 18 + 108979918 -CC----ATCACCCCTGGATTAA i rheMac8.chr13 I 1 C 0 s macFas5.chr13 5016555 18 - 111193037 -CC----GTCACCCCTGGATTAA i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3410420 22 + 3644372 -ccccaaatcacctctggattaa i macNem1.NW_012011978v1 I 1 I 13 s cerAty1.NW_012000820v1 3365635 18 - 10304083 -CC----ATCACCCCTGGATTAA i cerAty1.NW_012000820v1 I 1 I 9 s chlSab2.chr14 3448373 18 - 107702431 -CC----ATCACCCCTGGATTAA i chlSab2.chr14 I 1 C 0 s calJac3.chr14 3447111 18 - 108792865 -CC----ACCACCCCTGGATTAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100426 19 - 7082604 ACC----ACCACCCCTGGATTAA i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C a score=2818.000000 s hg38.chr2_KI270769v1_alt 46894 1 + 120616 T s panTro5.chr2A 3506645 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369452 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245701 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041153 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303819 1 + 108979918 T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016573 1 - 111193037 T i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365662 1 - 10304083 T i cerAty1.NW_012000820v1 I 9 C 0 s chlSab2.chr14 3448391 1 - 107702431 T i chlSab2.chr14 C 0 I 2 s calJac3.chr14 3447129 1 - 108792865 T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100445 1 - 7082604 C i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=135128.000000 s hg38.chr2_KI270769v1_alt 46895 44 + 120616 ACCCA-A---TCACCCCAGGATTAATACCCC-ATCACCCCTGGATTA--------AT s panTro5.chr2A 3506646 44 + 111504155 ACCCC-A---TCACCCCAGGATTAATACCCC-ACCACCCCTGGATTA--------AT i panTro5.chr2A C 0 I 44 s panPan2.chr2A 3369453 44 + 114371477 ACCCC-A---TCACCCCAGGATTAATACCCC-ACCACCCCTGGATTA--------AT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245702 41 + 637652 -CCCC-A---TCACCCCTGGATTA--ACCCC-ACCACCCCTGGATTA--------AC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041154 46 + 81552678 CCCCCAA---TCACCCCTGGATTAATCCCCCAATCACCCCTGGATTA--------AT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303820 55 + 108979918 CCCCC-ACCCTCACCCCTGGATTAATCCCCC-ATCGCCCCTGGATTAATCCCCCGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016574 44 - 111193037 CCCCC-A---TCACCCCTGGATTAATCCCCC-GTCACCCCTGGATTA--------AT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365663 43 - 10304083 CCCCC-A---TCACCCCTGGATTAAT-CCAC-ATTGCCCCTGGATTA--------AT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448394 31 - 107702431 CCCCC-A---TCACCCCTGGGTTAATCCccc--------------ca--------at i chlSab2.chr14 I 2 C 0 s calJac3.chr14 3447130 44 - 108792865 CCCCC-G---CCACCCCTGGATTAACCTCCC-ACCACCCCTGGATTA--------AT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100446 44 - 7082604 ACCCC-A---CCATGCCTAGATTAACCCCCC-ACCACCCATGGATTA--------AT i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=66843.000000 s hg38.chr2_KI270769v1_alt 46939 26 + 120616 CTCCCCACCACCCC-TGGATTAAT--CCC s panTro5.chr2A 3506734 27 + 111504155 A-CCCCACCACCCC-TGGATTAATACCCC i panTro5.chr2A I 44 C 0 s panPan2.chr2A 3369497 13 + 114371477 -CCCCCATCACCCC--------------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245743 24 + 637652 ---ACCTCCACCCCCTGGATTAAT--CCC i gorGor5.CYUI01015435v1 C 0 I 1 s nomLeu3.chr19 3041200 25 + 81552678 -CCCCCACCACCCT-TGGATTAAT--CTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303875 25 + 108979918 -CCCCCATCACCCC-TGGATTAAT--CCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016618 25 - 111193037 -CCCCCATCACCCC-TGGATCGAT--CCC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365706 25 - 10304083 -CCCCCATCACCCC-TGAATTAAT--ACC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448425 24 - 107702431 -cccccatcacccc-tggatcaa---ccc i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447174 25 - 108792865 -CCCCCACCACCCC-TGGATTAAT--CCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100490 26 - 7082604 CCCCCCACCACCCC-TGGATTAAC--CTC i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=6152.000000 s hg38.chr2_KI270769v1_alt 46965 2 + 120616 CC s panTro5.chr2A 3506761 2 + 111504155 TC i panTro5.chr2A C 0 C 0 s nomLeu3.chr19 3041225 2 + 81552678 CC i nomLeu3.chr19 C 0 T 93 s rheMac8.chr13 3303900 2 + 108979918 CC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016643 2 - 111193037 CC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365731 2 - 10304083 CC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448449 2 - 107702431 cc i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447199 2 - 108792865 CC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100516 2 - 7082604 CC i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e gorGor5.CYUI01015435v1 245767 1 + 637652 I e panPan2.chr2A 3369510 0 + 114371477 C a score=38006.000000 s hg38.chr2_KI270769v1_alt 46967 23 + 120616 ATCAGCCCTGGAATAATCCCCCC s panTro5.chr2A 3506763 23 + 111504155 CTCGCCGCTGGATTAATCCCCCA i panTro5.chr2A C 0 C 0 s rheMac8.chr13 3303902 23 + 108979918 ATCACCCCTGGATTAATCCCCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016645 23 - 111193037 ATCACCCCTGGATTAATCCCCCC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365733 23 - 10304083 ATCGCCCCTGGATTGATCCCCCC i cerAty1.NW_012000820v1 C 0 T 182 s chlSab2.chr14 3448451 23 - 107702431 atcacccCTGGATTAATAATCCC i chlSab2.chr14 C 0 I 2 s calJac3.chr14 3447201 22 - 108792865 ACCACCCCTGGATTAATCCCCC- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100518 22 - 7082604 ACCACCCCTGGATTAACACCCC- i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e nomLeu3.chr19 3041227 93 + 81552678 T e gorGor5.CYUI01015435v1 245767 1 + 637652 I e panPan2.chr2A 3369510 0 + 114371477 C a score=-960.000000 s hg38.chr2_KI270769v1_alt 46990 7 + 120616 ACCA--CCA s panTro5.chr2A 3506786 9 + 111504155 ATCACCCCA i panTro5.chr2A C 0 C 0 s rheMac8.chr13 3303925 6 + 108979918 -TCACCC-- i rheMac8.chr13 C 0 T 190 s chlSab2.chr14 3448476 7 - 107702431 ATTGCCC-- i chlSab2.chr14 I 2 I 2 s calJac3.chr14 3447223 9 - 108792865 ACCACCCCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100540 9 - 7082604 ACCATGCCT i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365756 182 - 10304083 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016668 0 - 111193037 C e nomLeu3.chr19 3041227 93 + 81552678 T e gorGor5.CYUI01015435v1 245767 1 + 637652 I e panPan2.chr2A 3369510 0 + 114371477 C a score=11360.000000 s hg38.chr2_KI270769v1_alt 46997 10 + 120616 GGATTAATAC s panTro5.chr2A 3506795 10 + 111504155 GGATTAATAC i panTro5.chr2A C 0 C 0 s rheMac8.chr13 3303741 10 + 108979918 GGATTAATCC i rheMac8.chr13 T 190 C 0 s macFas5.chr13 5016668 5 - 111193037 -----AATCC i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3448485 10 - 107702431 GGATTAATAT i chlSab2.chr14 I 2 C 0 s calJac3.chr14 3447232 10 - 108792865 GGATTAATCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100549 10 - 7082604 AGATTAACCC i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365756 182 - 10304083 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e nomLeu3.chr19 3041227 93 + 81552678 T e gorGor5.CYUI01015435v1 245767 1 + 637652 I e panPan2.chr2A 3369510 0 + 114371477 C a score=2800.000000 s hg38.chr2_KI270769v1_alt 47007 1 + 120616 C s panTro5.chr2A 3506805 1 + 111504155 C i panTro5.chr2A C 0 C 0 s nomLeu3.chr19 3041134 1 + 81552678 C i nomLeu3.chr19 T 93 C 0 s rheMac8.chr13 3303751 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016673 1 - 111193037 C i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3448495 1 - 107702431 C i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447242 1 - 108792865 C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100559 1 - 7082604 C i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365756 182 - 10304083 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e gorGor5.CYUI01015435v1 245767 1 + 637652 I e panPan2.chr2A 3369510 0 + 114371477 C a score=26254.000000 s hg38.chr2_KI270769v1_alt 47008 10 + 120616 CCA-----TCACCCC s panTro5.chr2A 3506806 10 + 111504155 CCA-----CCACCCC i panTro5.chr2A C 0 T 243 s gorGor5.CYUI01015435v1 245768 10 + 637652 CCA-----CCACCCC i gorGor5.CYUI01015435v1 I 1 C 0 s nomLeu3.chr19 3041135 10 + 81552678 CCA-----TCGCCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303752 15 + 108979918 CCAATCCCCCACCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016674 10 - 111193037 CCA-----TCACTCC i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3448496 10 - 107702431 CCA-----TCACCCC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447243 10 - 108792865 CCA-----CCACCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100560 10 - 7082604 CCA-----CCACCCC i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365756 182 - 10304083 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369510 0 + 114371477 C a score=15011.000000 s hg38.chr2_KI270769v1_alt 47018 10 + 120616 TGAATTAATC s panPan2.chr2A 3369510 10 + 114371477 TGGATTAATC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245778 8 + 637652 TGGATTAA-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041145 10 + 81552678 TGGATTAATC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303767 9 + 108979918 TGGATTAAT- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016684 9 - 111193037 TGGATTAAT- i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3448506 9 - 107702431 TAAATTAAT- i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447253 9 - 108792865 TGGATTAAT- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100570 8 - 7082604 -GGATTAAC- i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586463 52 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365756 182 - 10304083 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506816 243 + 111504155 T a score=76398.000000 s hg38.chr2_KI270769v1_alt 47028 33 + 120616 CCCCCACCA-CCCCTGGA--TTAATCCCC-CAATCAC s panPan2.chr2A 3369520 36 + 114371477 CCCCCATGGCCCCCTGGGATTTAACTCCC-CAATcac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245786 30 + 637652 CCCCCATTG-CCCCTGGA--TTAACACCT-C---CAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041155 33 + 81552678 CCCCAATCA-CCCCTGGA--TTAATCCCC-CAATCAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303776 32 + 108979918 CCCCTGTCA-CCCCTGGA--TCAA-TCCC-CCATCAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016693 32 - 111193037 CCCCCGTCA-CCCCTGGA--TTAA-TCCC-CCATCAC i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3448515 33 - 107702431 ACCCCATTG-CCCCTGGA--TCAACCCCC-CCATCAC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447262 32 - 108792865 CCCCCACCA-CCCCTGGA--TTAA-TCCC-CCACCAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100578 33 - 7082604 CCCCCACCA-TCCCTGGA--TTAA-CCCCACCACCAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586411 32 + 5243153 ccccCACCA-CCCCTGGA--TTAA-CCTC-CCACCAC i cebCap1.NW_016107454v1 T 52 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365756 182 - 10304083 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506816 243 + 111504155 T a score=18398.000000 s hg38.chr2_KI270769v1_alt 47061 6 + 120616 CCCTGG s panPan2.chr2A 3369556 5 + 114371477 cca-gg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245816 5 + 637652 CCT-GG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041188 6 + 81552678 CCCTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303808 6 + 108979918 CCCTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016725 6 - 111193037 CCCTGG i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365574 6 - 10304083 CCCTGG i cerAty1.NW_012000820v1 T 182 C 0 s chlSab2.chr14 3448548 6 - 107702431 CCCTGG i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447294 6 - 108792865 CCCTGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100611 6 - 7082604 TCCTGG i saiBol1.JH378218 C 0 T 200 s cebCap1.NW_016107454v1 586443 6 + 5243153 CCCTGG i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506816 243 + 111504155 T a score=100650.000000 s hg38.chr2_KI270769v1_alt 47067 28 + 120616 ATTAATCCCC-CCA---TCACCCCTGGATTAA s panPan2.chr2A 3369561 28 + 114371477 attaactacc-cca---ccaccccaggattaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245821 27 + 637652 ATTAATC-CC-CCA---CCACCCCTGGATTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041194 27 + 81552678 ATTAATC-CC-CCA---CCACCCTTGGATTAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303814 30 + 108979918 ATTAATC-CC-CCACCCTCACCCCTGGATTAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016731 27 - 111193037 ATTAATC-CC-CCG---TCACCCCTGGATTAA i macFas5.chr13 C 0 T 185 s cerAty1.NW_012000820v1 3365580 28 - 10304083 ATTAATC-CC-CCC--ACCACCCCTGGATTAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448554 27 - 107702431 ATTAATC-CC-CCA---TTGCCCCTGGATTAA i chlSab2.chr14 C 0 I 3 s calJac3.chr14 3447300 27 - 108792865 ATTAATC-CC-CCA---CCACCCCTGGATTAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100417 28 - 7082604 ATTAACC-CCACCA---CCACCCCTGGATTAA i saiBol1.JH378218 T 200 C 0 s cebCap1.NW_016107454v1 586449 28 + 5243153 ATTAATC-CCCCCA---CCACCCCTGGATTAA i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506816 243 + 111504155 T a score=119925.000000 s hg38.chr2_KI270769v1_alt 47095 54 + 120616 TGCCCCATCACCCCTGGAT---T-----------------------------------------AA-TCCCCCAA--------TCACCCCTGGATT---------AATCCCCCCA-T s panPan2.chr2A 3369589 52 + 114371477 ta-cccaccacccctggat---t-----------------------------------------aa-tccccc-a--------tcaccccaggatt---------aatagcccca-c i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245848 93 + 637652 CG-CCCATCACCCCTGGAT---TAACCCCTGCCACCCCTGGATTAATATCTCCACCCCTGGTTAAA-TCCCCC-A--------CCACCCGTGGATT---------AACCCCCCCA-T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041221 54 + 81552678 TCTCCCACCACCCCTAGAT---T-----------------------------------------AA-TCCCCCCA--------TCACTCCTGGATT---------TCTCCTCCCA-T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303844 60 + 108979918 TCCCCCATCGCCCCTGGAT---T-----------------------------------------AA-TCCCCC-GATCCCCCATCACCCCTGGATT---------AATCCCCCAT-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016573 52 - 111193037 TCCCCCATCACCCCTGGAT---T-----------------------------------------AA-TCCCCC-G--------TCACCCCTGGATT---------AATCCCCCAT-- i macFas5.chr13 T 185 I 133 s cerAty1.NW_012000820v1 3365608 62 - 10304083 TCCCCCGTCACCCCTGGAT---T-----------------------------------------AA-TCCCCC-C-------ATCACCCCTGGATTAATCCCCCCAATCCCCCAT-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448584 56 - 107702431 TCCCGCATCACCCCTGGATTCAT-----------------------------------------AA-TCCTGC-A--------TCACCCCTGGATT---------AATCCCCCCAC- i chlSab2.chr14 I 3 C 0 s calJac3.chr14 3447327 52 - 108792865 CATCCCACCACCCCTGGAT---T-----------------------------------------AA-CCTCCC-A--------CCACCCCTGGATT---------AA-CCTCCCA-C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100445 53 - 7082604 CACCCCACCATGCCTAGAT---T-----------------------------------------AA-CCCCCC-A--------CCACCCATGGATT---------AATCCCCCCA-C i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586477 54 + 5243153 CTTCCCACCACCCCTGGAT---T-----------------------------------------AATCCCCCC-A--------CCACCTCTGGATT---------AATCCCCCCA-C i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506816 243 + 111504155 T a score=63453.000000 s hg38.chr2_KI270769v1_alt 47149 14 + 120616 CACCCCTGGATTAA s panPan2.chr2A 3369641 14 + 114371477 cacccctggattaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245941 14 + 637652 CAGCCCTGGATTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041275 14 + 81552678 CGCCCCTGGATTAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303904 14 + 108979918 CACCCCTGGATTAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016758 14 - 111193037 CACCCCTGGATTAA i macFas5.chr13 I 133 C 0 s cerAty1.NW_012000820v1 3365670 14 - 10304083 CACCCCTGGATTAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448640 14 - 107702431 CACCCCTGGATTGA i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447379 14 - 108792865 CACCCCTGGATTAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100498 14 - 7082604 CACCCCTGGATTAA i saiBol1.JH378218 C 0 I 65 s cebCap1.NW_016107454v1 586531 14 + 5243153 CAAGCCTAGATTAA i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506816 243 + 111504155 T a score=2997.000000 s hg38.chr2_KI270769v1_alt 47163 1 + 120616 T s panPan2.chr2A 3369655 1 + 114371477 t i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 245955 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041289 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303918 1 + 108979918 T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016772 1 - 111193037 T i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365684 1 - 10304083 T i cerAty1.NW_012000820v1 C 0 T 76 s chlSab2.chr14 3448654 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447393 1 - 108792865 T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100577 1 - 7082604 C i saiBol1.JH378218 I 65 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586545 0 + 5243153 C e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506816 243 + 111504155 T a score=23146.000000 s hg38.chr2_KI270769v1_alt 47164 8 + 120616 ACCCCATC s panPan2.chr2A 3369656 8 + 114371477 cccccatc i panPan2.chr2A C 0 T 310 s gorGor5.CYUI01015435v1 245956 6 + 637652 ACCTCC-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041290 8 + 81552678 CCCCCATT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303919 8 + 108979918 CCCCCATC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016773 8 - 111193037 CCCCCATC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365609 8 - 10304083 CCCCCGTC i cerAty1.NW_012000820v1 T 76 C 0 s chlSab2.chr14 3448655 8 - 107702431 CCCCCATC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447394 8 - 108792865 CCCCCACC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100578 8 - 7082604 CCCCCACC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586545 8 + 5243153 CCCCTACC i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506816 243 + 111504155 T a score=52227.000000 s hg38.chr2_KI270769v1_alt 47172 16 + 120616 ACCCCTGAATTAATCC s gorGor5.CYUI01015435v1 245962 15 + 637652 ACCCCTGGATAAAT-C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041298 16 + 81552678 GCCCCTGAATTAAACC i nomLeu3.chr19 C 0 I 66 s rheMac8.chr13 3303927 16 + 108979918 ACCCCTGGATTAATCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016781 16 - 111193037 ACCCCTGGATTAATCC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365617 16 - 10304083 ACCCCTGGATTAATCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448663 16 - 107702431 ACCCCTGGATTAACCC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447402 16 - 108792865 ACCCCTGGATTAACCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100586 16 - 7082604 ATCCCTGGATTAACCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586553 16 + 5243153 ACCCCTGGATTAACCC i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369664 310 + 114371477 T e panTro5.chr2A 3506816 243 + 111504155 T a score=-3265.000000 s hg38.chr2_KI270769v1_alt 47188 3 + 120616 CCC-- s gorGor5.CYUI01015435v1 245977 3 + 637652 CCC-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041380 3 + 81552678 CCC-- i nomLeu3.chr19 I 66 C 0 s rheMac8.chr13 3303943 3 + 108979918 TCC-- i rheMac8.chr13 C 0 I 8 s macFas5.chr13 5016797 3 - 111193037 CCC-- i macFas5.chr13 C 0 I 127 s cerAty1.NW_012000820v1 3365633 3 - 10304083 CCC-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448679 3 - 107702431 CCC-- i chlSab2.chr14 C 0 I 2 s calJac3.chr14 3447418 2 - 108792865 --C-C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100602 3 - 7082604 --CAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586569 3 + 5243153 --CAC i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369664 310 + 114371477 T e panTro5.chr2A 3506816 243 + 111504155 T a score=3600.000000 s hg38.chr2_KI270769v1_alt 47191 1 + 120616 C s gorGor5.CYUI01015435v1 245980 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041383 1 + 81552678 C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303954 1 + 108979918 C i rheMac8.chr13 I 8 C 0 s cerAty1.NW_012000820v1 3365636 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448684 1 - 107702431 C i chlSab2.chr14 I 2 C 0 s calJac3.chr14 3447420 1 - 108792865 C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100605 1 - 7082604 C i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586572 1 + 5243153 C i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016800 127 - 111193037 I e panPan2.chr2A 3369664 310 + 114371477 T e panTro5.chr2A 3506816 243 + 111504155 T a score=17776.000000 s hg38.chr2_KI270769v1_alt 47192 6 + 120616 ACCA-CC s gorGor5.CYUI01015435v1 245981 6 + 637652 ACCA-CC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041384 7 + 81552678 ATCACCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303955 6 + 108979918 ATCA-CC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016927 6 - 111193037 ATCA-CC i macFas5.chr13 I 127 C 0 s cerAty1.NW_012000820v1 3365637 6 - 10304083 ATCA-CC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448685 6 - 107702431 ACCA-CC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447421 6 - 108792865 ACCA-CC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100606 6 - 7082604 ACCA-CT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586573 6 + 5243153 ATCA-CC i cebCap1.NW_016107454v1 C 0 T 116 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369664 310 + 114371477 T e panTro5.chr2A 3506816 243 + 111504155 T a score=17676.000000 s hg38.chr2_KI270769v1_alt 47198 5 + 120616 CCTGG s gorGor5.CYUI01015435v1 245987 5 + 637652 CCTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041391 5 + 81552678 CCTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303961 5 + 108979918 CCTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016933 5 - 111193037 CCTGG i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365643 5 - 10304083 CCTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448691 5 - 107702431 CCTGG i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447427 5 - 108792865 CCTGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100612 5 - 7082604 CCTGG i saiBol1.JH378218 C 0 T 237 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369664 310 + 114371477 T e panTro5.chr2A 3506816 243 + 111504155 T a score=5096.000000 s hg38.chr2_KI270769v1_alt 47203 2 + 120616 AT s gorGor5.CYUI01015435v1 245992 2 + 637652 AT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041396 2 + 81552678 AT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303966 2 + 108979918 AT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016938 2 - 111193037 AT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365648 2 - 10304083 AT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448696 2 - 107702431 AT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447432 2 - 108792865 AT i calJac3.chr14 C 0 I 2 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100617 237 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369664 310 + 114371477 T e panTro5.chr2A 3506816 243 + 111504155 T a score=726.000000 s hg38.chr2_KI270769v1_alt 47205 2 + 120616 AA s gorGor5.CYUI01015435v1 245994 2 + 637652 TA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041398 2 + 81552678 TA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303968 2 + 108979918 TG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016940 2 - 111193037 CG i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365650 2 - 10304083 TA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448698 2 - 107702431 TA i chlSab2.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100617 237 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e calJac3.chr14 3447434 2 - 108792865 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369664 310 + 114371477 T e panTro5.chr2A 3506816 243 + 111504155 T a score=10914.000000 s hg38.chr2_KI270769v1_alt 47207 6 + 120616 ATCC-CC s gorGor5.CYUI01015435v1 245996 6 + 637652 ACCC-CC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041400 7 + 81552678 ATCCACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303970 6 + 108979918 ATCC-CC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016942 6 - 111193037 ATCC-CC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365652 6 - 10304083 ATCC-CC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448700 6 - 107702431 Atcc-cc i chlSab2.chr14 C 0 T 307 s calJac3.chr14 3447436 6 - 108792865 ACCT-CC i calJac3.chr14 I 2 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100617 237 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369664 310 + 114371477 T e panTro5.chr2A 3506816 243 + 111504155 T a score=-8708.000000 s hg38.chr2_KI270769v1_alt 47213 13 + 120616 AATC---AACCCTGGC- s gorGor5.CYUI01015435v1 246002 1 + 637652 A---------------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041407 1 + 81552678 A---------------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303976 13 + 108979918 ---CGTCACCCCTGGA- i rheMac8.chr13 C 0 T 217 s macFas5.chr13 5016948 13 - 111193037 ---CATCACCCCTGGA- i macFas5.chr13 C 0 I 1 s cerAty1.NW_012000820v1 3365658 1 - 10304083 ---C------------- i cerAty1.NW_012000820v1 C 0 C 0 s calJac3.chr14 3447442 14 - 108792865 ---CACCACCCCTGGAT i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100617 237 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448706 307 - 107702431 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369664 310 + 114371477 T e panTro5.chr2A 3506816 243 + 111504155 T a score=6039.000000 s hg38.chr2_KI270769v1_alt 47226 10 + 120616 TAATCCCCCC s rheMac8.chr13 3303772 10 + 108979918 TAATCCCCTG i rheMac8.chr13 T 217 C 0 s macFas5.chr13 5016962 10 - 111193037 TAATCCCCCC i macFas5.chr13 I 1 T 445 s cerAty1.NW_012000820v1 3365659 10 - 10304083 CAATCCCCCA i cerAty1.NW_012000820v1 C 0 C 0 s calJac3.chr14 3447456 10 - 108792865 TAACCTCCCA i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100617 237 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448706 307 - 107702431 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e nomLeu3.chr19 3041408 0 + 81552678 C e gorGor5.CYUI01015435v1 246003 0 + 637652 C e panPan2.chr2A 3369664 310 + 114371477 T e panTro5.chr2A 3506816 243 + 111504155 T a score=6263.000000 s hg38.chr2_KI270769v1_alt 47236 5 + 120616 TCACC s gorGor5.CYUI01015435v1 246003 5 + 637652 TCACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041408 5 + 81552678 CCACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303782 5 + 108979918 TCACC i rheMac8.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365669 5 - 10304083 TCACC i cerAty1.NW_012000820v1 C 0 C 0 s calJac3.chr14 3447466 5 - 108792865 CCACC i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100617 237 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448706 307 - 107702431 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016972 445 - 111193037 T e panPan2.chr2A 3369664 310 + 114371477 T e panTro5.chr2A 3506816 243 + 111504155 T a score=13962.000000 s hg38.chr2_KI270769v1_alt 47241 8 + 120616 CCTGGATT s panPan2.chr2A 3369354 8 + 114371477 CCTGGATT i panPan2.chr2A T 310 C 0 s gorGor5.CYUI01015435v1 246008 8 + 637652 CCTGGATT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041413 8 + 81552678 CCTGCATT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303787 8 + 108979918 CCTGGATC i rheMac8.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365674 8 - 10304083 CCTGGATT i cerAty1.NW_012000820v1 C 0 C 0 s calJac3.chr14 3447471 8 - 108792865 CCTGGATT i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100617 237 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448706 307 - 107702431 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016972 445 - 111193037 T e panTro5.chr2A 3506816 243 + 111504155 T a score=6790.000000 s hg38.chr2_KI270769v1_alt 47249 3 + 120616 AAT s panPan2.chr2A 3369362 3 + 114371477 AAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246016 3 + 637652 AAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041421 3 + 81552678 AAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303795 3 + 108979918 AAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016527 3 - 111193037 AAT i macFas5.chr13 T 445 C 0 s cerAty1.NW_012000820v1 3365682 3 - 10304083 AAT i cerAty1.NW_012000820v1 C 0 T 93 s calJac3.chr14 3447479 3 - 108792865 AAT i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100617 237 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448706 307 - 107702431 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506816 243 + 111504155 T a score=-49.000000 s hg38.chr2_KI270769v1_alt 47252 1 + 120616 A s panPan2.chr2A 3369365 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246019 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041424 1 + 81552678 C i nomLeu3.chr19 C 0 T 111 s rheMac8.chr13 3303798 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016530 1 - 111193037 C i macFas5.chr13 C 0 C 0 s calJac3.chr14 3447482 1 - 108792865 C i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100617 237 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448706 307 - 107702431 T e cerAty1.NW_012000820v1 3365685 93 - 10304083 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506816 243 + 111504155 T a score=7614.000000 s hg38.chr2_KI270769v1_alt 47253 4 + 120616 CCCC s panPan2.chr2A 3369366 4 + 114371477 CCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246020 4 + 637652 CCTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041314 4 + 81552678 CCCC i nomLeu3.chr19 T 111 C 0 s rheMac8.chr13 3303799 4 + 108979918 CCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016531 4 - 111193037 CCCC i macFas5.chr13 C 0 C 0 s calJac3.chr14 3447483 4 - 108792865 CCCC i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100617 237 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448706 307 - 107702431 T e cerAty1.NW_012000820v1 3365685 93 - 10304083 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506816 243 + 111504155 T a score=23002.000000 s hg38.chr2_KI270769v1_alt 47257 11 + 120616 ATCACCCCTGA s panPan2.chr2A 3369370 11 + 114371477 ATCACCCCTGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246024 9 + 637652 --CGCCCCTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041318 11 + 81552678 ATCGCCCCTGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303803 11 + 108979918 ATCACCCCTGG i rheMac8.chr13 C 0 T 94 s macFas5.chr13 5016535 11 - 111193037 ATCACTCCTGG i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3448399 11 - 107702431 ATCACCCCTGG i chlSab2.chr14 T 307 T 136 s calJac3.chr14 3447487 11 - 108792865 ACCACCCCTGG i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100617 237 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365685 93 - 10304083 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506816 243 + 111504155 T a score=9883.000000 s hg38.chr2_KI270769v1_alt 47268 7 + 120616 ATTAATC s panTro5.chr2A 3506573 7 + 111504155 ATTAATC i panTro5.chr2A T 243 C 0 s panPan2.chr2A 3369381 6 + 114371477 ATTAAT- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246033 7 + 637652 ATTGATC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041329 7 + 81552678 ATTAAAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303720 7 + 108979918 ATTAATC i rheMac8.chr13 T 94 C 0 s macFas5.chr13 5016546 6 - 111193037 ATTAAT- i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3448274 7 - 107702431 attaatc i chlSab2.chr14 T 136 C 0 s calJac3.chr14 3447498 6 - 108792865 ATTAAC- i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100617 237 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365685 93 - 10304083 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=115186.000000 s hg38.chr2_KI270769v1_alt 47275 39 + 120616 CCCCCACCACCCCTGGATTAATCCCCCAA----TCACCCCTGG s panTro5.chr2A 3506580 38 + 111504155 CCCCCACCACCCCTGGATTAATACCCCA-----CCACCCCTGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369387 38 + 114371477 CCCCCATCACCCCAGGATTAATACCCCA-----CCACACCTGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246040 37 + 637652 CCCCCACCACCCCTGGATTAAC-CCCCA-----TCACCCCTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041336 36 + 81552678 CCCCCATCACCCCTGAATTAATACCC-------CCACCCCTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303727 43 + 108979918 CCCCCATCACCCCTGGATTAATCCCCCAATCCCCCACCCCTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016552 38 - 111193037 CCCCCGTCACCCCTGGATTAATCCCCCA-----TCACCCCTGG i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3448281 39 - 107702431 cccccactacccctggattaatccccccA----CCACCCCTGG i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447504 35 - 108792865 CTCCCACCACCCCTGGATTAATCCC--------CCACCCCTGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100380 37 - 7082604 CCCCCACCACCCCTGGATTAACCCCC-A-----CCACCCCTGG i saiBol1.JH378218 T 237 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353694 14 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365685 93 - 10304083 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=108287.000000 s hg38.chr2_KI270769v1_alt 47314 34 + 120616 ATTAAT-CCC---------------------CCCATCA-CCCCTGGATTAATACCCC s panTro5.chr2A 3506618 33 + 111504155 ATTAAT-CCC---------------------CC-ATCA-CCCCAGGATTAATACCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369425 33 + 114371477 ATTAAT-CCC---------------------CC-ATCA-CCCCTGGATTAATACCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246077 32 + 637652 ATTAAC-CCC---------------------C--ACCA-CCCCTGGATTAATACTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041372 35 + 81552678 ATTAAC-TCC---------------------CCCATCACCCCCTGGATTAATCCACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303770 33 + 108979918 ATTAAT-CCC---------------------CT-GTCA-CCCCTGGATCAATCCCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016590 33 - 111193037 ATTAAT-CCC---------------------CC-GTCA-CCCCTGGATTAATCCCCC i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3448320 33 - 107702431 ATTAAT-CCC---------------------CC-ATCA-CCCCTGGATTAATCCCCT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3353680 34 - 13651311 ATTAATCCCC---------------------CC-ACCA-CCCCTGGATTAATCCCCC i colAng1.NW_012118821v1 T 14 C 0 s calJac3.chr14 3447539 54 - 108792865 ATTAAT-CCCCCACCACCCTGGATTAACCTCCC-ACCA-CCCCTGGATTAACATCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100417 34 - 7082604 ATTAAC-CCC--------------------ACC-ACCA-CCCCTGGATTAACACCCC i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365685 93 - 10304083 T e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=151454.000000 s hg38.chr2_KI270769v1_alt 47348 32 + 120616 ATCACCCCTGGATTAATACCCCA---TCACCCCTG s panTro5.chr2A 3506651 32 + 111504155 ATCACCCCAGGATTAATACCCCA---CCACCCCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369458 32 + 114371477 ATCACCCCAGGATTAATACCCCA---CCACCCCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246109 30 + 637652 --CACCCCTGGATAAATCCCCCA---CCACCCCCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041407 32 + 81552678 ACCACCCCTGCATTAATCCCCCA---TCACCCCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303803 35 + 108979918 ATCACCCCTGGATTAATCCCCCACCCTCACCCCTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016623 32 - 111193037 ATCACCCCTGGATCGATCCCCCA---TCACCCCTG i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365592 32 - 10304083 ACCACCCCTGGATTAATCCCCCG---TCACCCCTG i cerAty1.NW_012000820v1 T 93 C 0 s chlSab2.chr14 3448353 32 - 107702431 GTCACCCCTGGATTAATCCCCCA---TCACCCCTG i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3353714 32 - 13651311 ATCACCCCTGGATTAATCCCCCA---TCACCCCTG i colAng1.NW_012118821v1 C 0 T 52 s calJac3.chr14 3447593 32 - 108792865 ACCACCCCTGGATTAACCTCTCA---CCACCCCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100451 32 - 7082604 ACCATGCCTAGATTAACCCCCCA---CCACCCATG i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=53390.000000 s hg38.chr2_KI270769v1_alt 47380 12 + 120616 GATTAATCCCCC s panTro5.chr2A 3506683 11 + 111504155 GATTAAT-CCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369490 11 + 114371477 GATTAAT-CCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246139 12 + 637652 GATTAATCCCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041439 12 + 81552678 GATTAATCCCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303838 12 + 108979918 GATTAATCCCCC i rheMac8.chr13 C 0 I 1 s macFas5.chr13 5016655 12 - 111193037 GATTAATCCCCC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365624 12 - 10304083 GATTAATCCCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448385 12 - 107702431 GATTAATCCCCC i chlSab2.chr14 C 0 I 1 s calJac3.chr14 3447625 12 - 108792865 GATTAATCCCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100483 12 - 7082604 GATTAATCCCCC i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=8595.000000 s hg38.chr2_KI270769v1_alt 47392 2 + 120616 CA s panTro5.chr2A 3506694 2 + 111504155 CA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369501 2 + 114371477 CA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246151 2 + 637652 CA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041451 2 + 81552678 CA i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5016667 2 - 111193037 CA i macFas5.chr13 C 0 I 259 s cerAty1.NW_012000820v1 3365636 2 - 10304083 CA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448398 2 - 107702431 CA i chlSab2.chr14 I 1 C 0 s calJac3.chr14 3447637 2 - 108792865 CA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100495 2 - 7082604 CA i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e rheMac8.chr13 3303850 1 + 108979918 I a score=46329.000000 s hg38.chr2_KI270769v1_alt 47394 15 + 120616 CCACCCCTGGATTAA s panTro5.chr2A 3506696 15 + 111504155 TCACCCCAGGATTAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369503 15 + 114371477 TCACCCCTGGATTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246153 15 + 637652 CCACCCCTGGATTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041453 12 + 81552678 TCA---CTGGATTAA i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5016928 15 - 111193037 TCACCCCTGGATCGA i macFas5.chr13 I 259 C 0 s cerAty1.NW_012000820v1 3365638 15 - 10304083 TCACCCCTGGATTAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448400 15 - 107702431 TCACCCCTGGGTTAA i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447639 15 - 108792865 CCACCCTGGGATTAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100497 15 - 7082604 CCACCCCTGGATTAA i saiBol1.JH378218 C 0 T 72 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e rheMac8.chr13 3303850 1 + 108979918 I a score=16817.000000 s hg38.chr2_KI270769v1_alt 47409 6 + 120616 TCCCCC s panTro5.chr2A 3506711 6 + 111504155 TACCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369518 6 + 114371477 TCCCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246168 6 + 637652 CCCCCC i gorGor5.CYUI01015435v1 C 0 I 6 s nomLeu3.chr19 3041465 6 + 81552678 TCCCCC i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5016943 6 - 111193037 TCCCCC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365653 6 - 10304083 TCCCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448415 6 - 107702431 TCCccc i chlSab2.chr14 C 0 I 144 s calJac3.chr14 3447654 6 - 108792865 CCTCCC i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100512 72 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e rheMac8.chr13 3303850 1 + 108979918 I a score=-221.000000 s hg38.chr2_KI270769v1_alt 47415 1 + 120616 A s panPan2.chr2A 3369524 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246180 1 + 637652 C i gorGor5.CYUI01015435v1 I 6 C 0 s nomLeu3.chr19 3041471 1 + 81552678 C i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5016949 1 - 111193037 A i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365659 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100512 72 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e calJac3.chr14 3447660 0 - 108792865 C e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448421 144 - 107702431 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e rheMac8.chr13 3303850 1 + 108979918 I e panTro5.chr2A 3506717 0 + 111504155 C a score=2548.000000 s hg38.chr2_KI270769v1_alt 47416 1 + 120616 A s panTro5.chr2A 3506717 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369525 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246181 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041472 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s cerAty1.NW_012000820v1 3365660 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 I 8 s chlSab2.chr14 3448565 1 - 107702431 A i chlSab2.chr14 I 144 C 0 s calJac3.chr14 3447660 1 - 108792865 A i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100512 72 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016950 0 - 111193037 C e rheMac8.chr13 3303850 1 + 108979918 I a score=41563.000000 s hg38.chr2_KI270769v1_alt 47417 16 + 120616 T--CACCCCTGGATT---------AAT s panTro5.chr2A 3506718 16 + 111504155 T--CACCCCAGGATT---------AAT i panTro5.chr2A C 0 T 44 s panPan2.chr2A 3369526 27 + 114371477 TGGCCCCCTGGGATTTAACTCCCCAAT i panPan2.chr2A C 0 I 2 s gorGor5.CYUI01015435v1 246182 15 + 637652 C--CACCCCTGGATT---------AA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041473 16 + 81552678 C--CACCCCTGGATT---------AAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303851 16 + 108979918 T--CGCCCCTGGATT---------AAT i rheMac8.chr13 I 1 C 0 s macFas5.chr13 5016950 16 - 111193037 T--CACCCCTGGATT---------AAT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365669 16 - 10304083 T--CACCCCTGGATT---------AAT i cerAty1.NW_012000820v1 I 8 C 0 s chlSab2.chr14 3448566 16 - 107702431 T--TGCCCCTGGATT---------AAT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447661 16 - 108792865 C--CACCCCTGGATT---------AAT i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100512 72 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=430.000000 s hg38.chr2_KI270769v1_alt 47433 1 + 120616 C s nomLeu3.chr19 3041489 1 + 81552678 C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303867 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016966 1 - 111193037 C i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365685 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448582 1 - 107702431 A i chlSab2.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100512 72 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e calJac3.chr14 3447677 0 - 108792865 C e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e gorGor5.CYUI01015435v1 246197 0 + 637652 C e panPan2.chr2A 3369553 2 + 114371477 I e panTro5.chr2A 3506734 44 + 111504155 T a score=4239.000000 s hg38.chr2_KI270769v1_alt 47434 5 + 120616 CCCCC s panTro5.chr2A 3506690 5 + 111504155 CCCCC i panTro5.chr2A T 44 C 0 s nomLeu3.chr19 3041490 5 + 81552678 CCCCC i nomLeu3.chr19 C 0 I 114 s rheMac8.chr13 3303868 5 + 108979918 CCCCG i rheMac8.chr13 C 0 I 7 s macFas5.chr13 5016967 5 - 111193037 CCCCC i macFas5.chr13 C 0 T 303 s cerAty1.NW_012000820v1 3365686 3 - 10304083 CAC-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448583 5 - 107702431 ATCCC i chlSab2.chr14 C 0 I 2 s calJac3.chr14 3447677 5 - 108792865 CCCCC i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100512 72 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e gorGor5.CYUI01015435v1 246197 0 + 637652 C e panPan2.chr2A 3369553 2 + 114371477 I a score=17917.000000 s hg38.chr2_KI270769v1_alt 47439 11 + 120616 ATCACCCCAGG s panTro5.chr2A 3506695 11 + 111504155 ATCACCCCAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369555 6 + 114371477 -----cccagg i panPan2.chr2A I 2 C 0 s nomLeu3.chr19 3041609 11 + 81552678 ACCACCCCTGG i nomLeu3.chr19 I 114 C 0 s rheMac8.chr13 3303880 11 + 108979918 ATCACCCCTGG i rheMac8.chr13 I 7 C 0 s cerAty1.NW_012000820v1 3365689 11 - 10304083 ATTGCCCCTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448590 11 - 107702431 ATCACCCCTGG i chlSab2.chr14 I 2 C 0 s calJac3.chr14 3447682 11 - 108792865 ACCACCCCTGC i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100512 72 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016972 303 - 111193037 T e gorGor5.CYUI01015435v1 246197 0 + 637652 C a score=9828.000000 s hg38.chr2_KI270769v1_alt 47450 3 + 120616 ATT s panTro5.chr2A 3506706 3 + 111504155 ATT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369561 3 + 114371477 att i panPan2.chr2A C 0 C 0 s nomLeu3.chr19 3041620 3 + 81552678 ATT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303891 3 + 108979918 ATT i rheMac8.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365700 3 - 10304083 ATT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448601 3 - 107702431 ATT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3447693 3 - 108792865 ATT i calJac3.chr14 C 0 I 1165 s saiBol1.JH378218 3100440 3 - 7082604 ATT i saiBol1.JH378218 T 72 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016972 303 - 111193037 T e gorGor5.CYUI01015435v1 246197 0 + 637652 C a score=1636.000000 s hg38.chr2_KI270769v1_alt 47453 1 + 120616 A s panTro5.chr2A 3506709 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369564 1 + 114371477 a i panPan2.chr2A C 0 C 0 s nomLeu3.chr19 3041623 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303894 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365703 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448604 1 - 107702431 C i chlSab2.chr14 C 0 I 3 s calJac3.chr14 3448861 1 - 108792865 a i calJac3.chr14 I 1165 C 0 s saiBol1.JH378218 3100443 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016972 303 - 111193037 T e gorGor5.CYUI01015435v1 246197 0 + 637652 C a score=37770.000000 s hg38.chr2_KI270769v1_alt 47454 16 + 120616 A-TACCCCATCACCCCA s panTro5.chr2A 3506710 16 + 111504155 A-TACCCCATCACCCCA i panTro5.chr2A C 0 T 145 s panPan2.chr2A 3369565 17 + 114371477 actaccccaccacccca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246197 14 + 637652 ---CCCCCACCACCCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041624 16 + 81552678 A-TTCCCTGTCACCTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303895 16 + 108979918 -ATCCCCCATCACCCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016669 16 - 111193037 -ATCCCCCATCACTCCT i macFas5.chr13 T 303 C 0 s cerAty1.NW_012000820v1 3365704 16 - 10304083 -ATCCCCCATCACCCCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448608 16 - 107702431 -ATCCTGCATCACCCCT i chlSab2.chr14 I 3 C 0 s calJac3.chr14 3448862 16 - 108792865 -atcccccaccacccct i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100444 16 - 7082604 -ACACCCCACCATGCCT i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=18381.000000 s hg38.chr2_KI270769v1_alt 47470 13 + 120616 GGATTAAT-C--CCCC- s panPan2.chr2A 3369582 12 + 114371477 ggattaat-a--ccc-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246211 15 + 637652 GGATTCAT-CATCCCC- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041640 13 + 81552678 GGATTAAT-T--CCCC- i nomLeu3.chr19 C 0 T 158 s rheMac8.chr13 3303911 12 + 108979918 GGATTAAT-C--CCC-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016685 12 - 111193037 GGATTAAT-C--CCC-- i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365720 12 - 10304083 GAATTAAT-A--CCC-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448624 13 - 107702431 GGATTAATCC--CCC-- i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3448878 13 - 108792865 ggattaat-c--ccc-c i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100460 13 - 7082604 AGATTAAC-C--CCC-C i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506726 145 + 111504155 T a score=-4999.000000 s hg38.chr2_KI270769v1_alt 47483 1 + 120616 -A s gorGor5.CYUI01015435v1 246226 1 + 637652 -C i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3303923 1 + 108979918 -C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016697 1 - 111193037 -C i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365732 1 - 10304083 -C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448637 1 - 107702431 -C i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3448891 1 - 108792865 a- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100473 1 - 7082604 A- i saiBol1.JH378218 C 0 I 44 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e nomLeu3.chr19 3041653 158 + 81552678 T e panPan2.chr2A 3369594 0 + 114371477 C e panTro5.chr2A 3506726 145 + 111504155 T a score=11844.000000 s hg38.chr2_KI270769v1_alt 47484 5 + 120616 ATCAC s panPan2.chr2A 3369594 5 + 114371477 accac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246227 5 + 637652 ACCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041495 5 + 81552678 ATCAC i nomLeu3.chr19 T 158 C 0 s rheMac8.chr13 3303924 5 + 108979918 ATCAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016698 5 - 111193037 GTCAC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365733 5 - 10304083 ATCGC i cerAty1.NW_012000820v1 C 0 T 164 s chlSab2.chr14 3448638 5 - 107702431 ACCAC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3448892 4 - 108792865 -ccac i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100474 44 - 7082604 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506726 145 + 111504155 T a score=34317.000000 s hg38.chr2_KI270769v1_alt 47489 18 + 120616 CCCTGGATT---------AAT-CCCCCA- s panPan2.chr2A 3369599 17 + 114371477 ccctggatt---------aat-ccccc-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246232 17 + 637652 CCCTGGATT---------CAT-CCCCC-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041500 18 + 81552678 CCCTGGATT---------AAT-CCACCC- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303929 26 + 108979918 CCCTGGATTAATCCTCCCAAT-CCCCC-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016703 17 - 111193037 CCCTGGATT---------AAT-CCCCC-- i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365574 18 - 10304083 CCCTGGATT---------AATCCCCCC-- i cerAty1.NW_012000820v1 T 164 C 0 s chlSab2.chr14 3448643 17 - 107702431 CCCTGGATT---------GAT-CCCCC-- i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3448896 18 - 108792865 ccctggatt---------aac-ctccc-a i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100474 44 - 7082604 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506726 145 + 111504155 T a score=4227.000000 s hg38.chr2_KI270769v1_alt 47507 2 + 120616 AT s panPan2.chr2A 3369616 2 + 114371477 at i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246249 2 + 637652 AT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041518 2 + 81552678 AC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303955 2 + 108979918 AT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016720 2 - 111193037 AT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365592 2 - 10304083 AC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448660 2 - 107702431 AT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3448914 1 - 108792865 -c i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100518 2 - 7082604 AC i saiBol1.JH378218 I 44 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586579 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506726 145 + 111504155 T a score=77595.000000 s hg38.chr2_KI270769v1_alt 47509 20 + 120616 CACCCCTGGATTAATA-CCCC s panPan2.chr2A 3369618 21 + 114371477 caccccaggattaatagcccc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246251 18 + 637652 CAGCCCTGGATTAATA---CC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041520 20 + 81552678 CACCCCTGGATTAATC-CCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303957 20 + 108979918 CACCCCTGGATTGATC-CCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016722 20 - 111193037 CACCCCTGGATTAATC-CCCC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365594 20 - 10304083 CACCCCTGGATTAATC-CCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448662 20 - 107702431 CACCCCTGGATTAACC-CCCC i chlSab2.chr14 C 0 T 252 s calJac3.chr14 3448915 20 - 108792865 cacccctgGATTAACC-TCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100520 20 - 7082604 CACCCCTGGATTAACA-CCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586463 20 + 5243153 CACCCCTGGATTAACT-TCCC i cebCap1.NW_016107454v1 T 116 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506726 145 + 111504155 T a score=26070.000000 s hg38.chr2_KI270769v1_alt 47529 18 + 120616 ATCACCCCTGGATTAAT-C s panPan2.chr2A 3369639 18 + 114371477 accacccctggattaat-c i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246269 18 + 637652 TCCACCCCTGGATTAAT-C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041540 18 + 81552678 ATCACCTCTGGATTAAT-C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303977 2 + 108979918 GT----------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016742 16 - 111193037 GTCACCCCTGGATTAA--- i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365614 18 - 10304083 GTCACCCCTGGATTAAT-C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448430 16 - 107702431 atcacccctggatcaa--- i chlSab2.chr14 T 252 C 0 s calJac3.chr14 3448935 17 - 108792865 ACCACCCCTGGATTAAC-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100540 17 - 7082604 ACCATGCCTAGATTAAC-- i saiBol1.JH378218 C 0 T 243 s cebCap1.NW_016107454v1 586483 18 + 5243153 ACCACCCCTGGATTAATC- i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506726 145 + 111504155 T a score=13352.000000 s hg38.chr2_KI270769v1_alt 47547 4 + 120616 CCCC s panPan2.chr2A 3369657 4 + 114371477 cccc i panPan2.chr2A C 0 T 362 s gorGor5.CYUI01015435v1 246287 4 + 637652 CCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041558 4 + 81552678 CCCC i nomLeu3.chr19 C 0 C 0 s cerAty1.NW_012000820v1 3365632 4 - 10304083 CCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448446 4 - 107702431 cccc i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3448952 4 - 108792865 CTCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100314 4 - 7082604 cccc i saiBol1.JH378218 T 243 C 0 s cebCap1.NW_016107454v1 586501 4 + 5243153 CCCC i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016758 0 - 111193037 C e rheMac8.chr13 3303979 0 + 108979918 C e panTro5.chr2A 3506726 145 + 111504155 T a score=65083.000000 s hg38.chr2_KI270769v1_alt 47551 29 + 120616 CATCACCCCTGGATT---------AA-TCCCCCAATCAC s gorGor5.CYUI01015435v1 246291 26 + 637652 -ACCACCC-TGGATT---------AA-CCCCTCG-CCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041562 29 + 81552678 CACCACCCCTGGATT---------AA-TCCACCCACCAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3303979 25 + 108979918 ---CACCCCTGGATT---------AA-TCCCCCG-TCAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016758 25 - 111193037 ---CACCCCTGGATT---------AA-TCCCCCA-TCAC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365636 37 - 10304083 CATCACCCCTGGATTAATCCCCCCAA-TCCCCCA-TCAC i cerAty1.NW_012000820v1 C 0 T 99 s chlSab2.chr14 3448450 31 - 107702431 catcacccCTGGATTAAT------AA-TCCCACA-TTGC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3448956 28 - 108792865 CACCACCCCTGGATT---------AA-TCCCCCG-CCAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100318 28 - 7082604 caccacccctggatt---------aa-cctccca-ccac i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586505 29 + 5243153 CACCACCTCTGGATT---------AATCCCCCCA-CCAA i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369661 362 + 114371477 T e panTro5.chr2A 3506726 145 + 111504155 T a score=32877.000000 s hg38.chr2_KI270769v1_alt 47580 12 + 120616 CCCTGGATTAA-T s gorGor5.CYUI01015435v1 246317 12 + 637652 CCCTGGATTAA-T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041591 12 + 81552678 CCCTGGATTAA-T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304004 12 + 108979918 CCCTGGATTAA-T i rheMac8.chr13 C 0 I 8 s macFas5.chr13 5016783 12 - 111193037 CCCTGGATTAA-T i macFas5.chr13 C 0 I 7 s cerAty1.NW_012000820v1 3365574 12 - 10304083 CCCTGGATTAA-T i cerAty1.NW_012000820v1 T 99 C 0 s chlSab2.chr14 3448481 12 - 107702431 CCCTGGATTAA-T i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3448984 11 - 108792865 CCCTGGATTAA-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100346 12 - 7082604 ccctggattaat- i saiBol1.JH378218 C 0 I 154 s cebCap1.NW_016107454v1 586534 11 + 5243153 GCCTAGATTAA-- i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369661 362 + 114371477 T e panTro5.chr2A 3506726 145 + 111504155 T a score=808.000000 s hg38.chr2_KI270769v1_alt 47592 1 + 120616 C s gorGor5.CYUI01015435v1 246329 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 I 7 s nomLeu3.chr19 3041603 1 + 81552678 C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304024 1 + 108979918 T i rheMac8.chr13 I 8 C 0 s macFas5.chr13 5016802 1 - 111193037 T i macFas5.chr13 I 7 C 0 s cerAty1.NW_012000820v1 3365586 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s calJac3.chr14 3448995 1 - 108792865 C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100512 1 - 7082604 C i saiBol1.JH378218 I 154 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586545 0 + 5243153 C e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448493 0 - 107702431 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369661 362 + 114371477 T e panTro5.chr2A 3506726 145 + 111504155 T a score=93010.000000 s hg38.chr2_KI270769v1_alt 47593 21 + 120616 CCCCCATCACCCCTGGATTAA s panPan2.chr2A 3369299 21 + 114371477 CCCCCATCACCCCAGGATTAA i panPan2.chr2A T 362 C 0 s gorGor5.CYUI01015435v1 246337 21 + 637652 CACCCATCACCCCTGGATTAA i gorGor5.CYUI01015435v1 I 7 C 0 s nomLeu3.chr19 3041604 21 + 81552678 CCCCCACCACCCCTGGATTAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304025 21 + 108979918 CCCCCATCACTCCTGGATTAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016803 21 - 111193037 CCCCCATCACCCCTGGATTAA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365587 21 - 10304083 CCCCCACCACCCCTGGATTAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448493 21 - 107702431 ATCCCATCACCCCTAAATTAA i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3448996 21 - 108792865 CTCCCACCACCCCTGGATTAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100513 21 - 7082604 CTCCCACCACCCCTGGATTAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586545 21 + 5243153 CCCCTACCACCCCTGGATTAA i cebCap1.NW_016107454v1 C 0 T 89 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506726 145 + 111504155 T a score=167.000000 s hg38.chr2_KI270769v1_alt 47614 2 + 120616 TA s panPan2.chr2A 3369320 2 + 114371477 TA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246358 2 + 637652 CC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041625 2 + 81552678 TT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304046 2 + 108979918 TC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016824 2 - 111193037 TC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365608 2 - 10304083 TC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448514 2 - 107702431 TA i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3449017 2 - 108792865 TC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100534 2 - 7082604 CA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586477 2 + 5243153 CT i cebCap1.NW_016107454v1 T 89 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506726 145 + 111504155 T a score=102278.000000 s hg38.chr2_KI270769v1_alt 47616 26 + 120616 CCCCATCACCCCTGGATTAA-TCCCCC s panTro5.chr2A 3506581 26 + 111504155 CCCCACCACCCCTGGATTAA-TACCCC i panTro5.chr2A T 145 C 0 s panPan2.chr2A 3369322 26 + 114371477 CCCCATCACCCCAGGATTAA-TACCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246360 26 + 637652 CCCCATCACCCCTGGATTAA-TCCCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041627 26 + 81552678 CCCTGTCACCTCTGGATTAA-TTCCCC i nomLeu3.chr19 C 0 T 113 s rheMac8.chr13 3304048 25 + 108979918 CCCCATCACCCCTGGATCGA-T-CCCC i rheMac8.chr13 C 0 I 1 s macFas5.chr13 5016826 25 - 111193037 CCCCGTCACCCCTGGATTAA-T-CCCC i macFas5.chr13 C 0 I 1 s cerAty1.NW_012000820v1 3365610 26 - 10304083 CCCCGTCACCCCTGGATTAA-TCCCCC i cerAty1.NW_012000820v1 C 0 I 1 s chlSab2.chr14 3448516 26 - 107702431 CCCCATTGCCCCTGGATCAA-CCCCCC i chlSab2.chr14 C 0 I 1 s calJac3.chr14 3449019 25 - 108792865 CCCCACCACCCCTGGATTAA-TCCCC- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100536 25 - 7082604 CCCCACCATGCCTAGATTAA-CCCCC- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586479 26 + 5243153 TCCCACCACCCCTGGATTAATCCCCC- i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=-5040.000000 s hg38.chr2_KI270769v1_alt 47642 1 + 120616 -A s panTro5.chr2A 3506607 1 + 111504155 -A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369348 1 + 114371477 -A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246386 1 + 637652 -G i gorGor5.CYUI01015435v1 C 0 C 0 s calJac3.chr14 3449044 1 - 108792865 C- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100561 1 - 7082604 C- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586505 1 + 5243153 C- i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448542 1 - 107702431 I e cerAty1.NW_012000820v1 3365636 1 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016851 1 - 111193037 I e rheMac8.chr13 3304073 1 + 108979918 I e nomLeu3.chr19 3041653 113 + 81552678 T a score=3316.000000 s hg38.chr2_KI270769v1_alt 47643 2 + 120616 AT s panTro5.chr2A 3506608 1 + 111504155 -C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369349 1 + 114371477 -C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246387 1 + 637652 -T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041540 2 + 81552678 AT i nomLeu3.chr19 T 113 C 0 s rheMac8.chr13 3304074 2 + 108979918 AT i rheMac8.chr13 I 1 C 0 s macFas5.chr13 5016852 2 - 111193037 GT i macFas5.chr13 I 1 C 0 s cerAty1.NW_012000820v1 3365637 2 - 10304083 AT i cerAty1.NW_012000820v1 I 1 C 0 s chlSab2.chr14 3448543 2 - 107702431 AT i chlSab2.chr14 I 1 C 0 s calJac3.chr14 3449045 2 - 108792865 AC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100562 2 - 7082604 AC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586506 2 + 5243153 AC i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 52 - 13651311 T e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=126806.000000 s hg38.chr2_KI270769v1_alt 47645 20 + 120616 CACCCCTGGATTAAT-CCCCC s panTro5.chr2A 3506609 20 + 111504155 CACCCCTGGATTAAT-CCCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369350 20 + 114371477 CAAACCTGGATTAAT-CCCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246388 20 + 637652 CACCCCTGGATTGAT-CCCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041542 21 + 81552678 CACCTCTGGATTAATCCCCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304076 20 + 108979918 CACCCCTGGATTAAT-CCCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016854 20 - 111193037 CACCCCTGGATTGAT-CCCCC i macFas5.chr13 C 0 I 2 s cerAty1.NW_012000820v1 3365639 20 - 10304083 CACCCCTGGATTAAT-CCCCC i cerAty1.NW_012000820v1 C 0 I 9 s chlSab2.chr14 3448545 20 - 107702431 CACCCCTGGATTAAT-CCCCC i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3353694 20 - 13651311 CACCCCTGGATTAAT-CCCCC i colAng1.NW_012118821v1 T 52 C 0 s calJac3.chr14 3449047 20 - 108792865 CACCCCTGGATTAAT-CCCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100564 19 - 7082604 CACCCC-GGATTAAC-CCCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586508 20 + 5243153 CACCTCTGGATTAAT-CCCCC i cebCap1.NW_016107454v1 C 0 T 116 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=46683.000000 s hg38.chr2_KI270769v1_alt 47665 16 + 120616 ATCACCCCTGGATTAA s panTro5.chr2A 3506629 16 + 111504155 ATCACCCCAGGATTAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369370 16 + 114371477 ATCACCCCTGAATTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246408 16 + 637652 ATCACCCCTGGATTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041563 16 + 81552678 ACCACCCCTGGATTAA i nomLeu3.chr19 C 0 C 0 s chlSab2.chr14 3448565 16 - 107702431 ATTGCCCCTGGATTAA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3353714 16 - 13651311 ATCACCCCTGGATTAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3449067 16 - 108792865 ACCACCCCTGGATTAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100583 16 - 7082604 ACCATCCCTGGATTAA i saiBol1.JH378218 C 0 T 298 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365659 9 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016874 2 - 111193037 I e rheMac8.chr13 3304096 0 + 108979918 C a score=-509.000000 s hg38.chr2_KI270769v1_alt 47681 3 + 120616 TAC s panTro5.chr2A 3506645 3 + 111504155 TAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369386 3 + 114371477 TCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246424 2 + 637652 C-C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041579 3 + 81552678 TCC i nomLeu3.chr19 C 0 T 193 s chlSab2.chr14 3448581 3 - 107702431 TAA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3353730 3 - 13651311 TCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3449083 3 - 108792865 TCC i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100599 298 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365659 9 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016874 2 - 111193037 I e rheMac8.chr13 3304096 0 + 108979918 C a score=5514.000000 s hg38.chr2_KI270769v1_alt 47684 3 + 120616 CCC s panTro5.chr2A 3506648 3 + 111504155 CCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369389 3 + 114371477 CCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246426 3 + 637652 CCC i gorGor5.CYUI01015435v1 C 0 C 0 s chlSab2.chr14 3448584 3 - 107702431 TCC i chlSab2.chr14 C 0 I 3 s colAng1.NW_012118821v1 3353733 3 - 13651311 CCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3449086 3 - 108792865 CCC i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100599 298 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365659 9 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016874 2 - 111193037 I e rheMac8.chr13 3304096 0 + 108979918 C e nomLeu3.chr19 3041582 193 + 81552678 T a score=19978.000000 s hg38.chr2_KI270769v1_alt 47687 10 + 120616 ATCACCCCTG s panTro5.chr2A 3506651 10 + 111504155 ATCACCCCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369392 10 + 114371477 ATCACCCCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246429 10 + 637652 ATCACCCCTG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3304096 2 + 108979918 --CA------ i rheMac8.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365668 10 - 10304083 ATCACCCCTG i cerAty1.NW_012000820v1 I 9 C 0 s chlSab2.chr14 3448590 10 - 107702431 ATCACCCCTG i chlSab2.chr14 I 3 C 0 s colAng1.NW_012118821v1 3353736 10 - 13651311 ATCACCCCTG i colAng1.NW_012118821v1 C 0 I 13634 s calJac3.chr14 3449089 10 - 108792865 ACCACCCCTG i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100599 298 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016874 2 - 111193037 I e nomLeu3.chr19 3041582 193 + 81552678 T a score=7833.000000 s hg38.chr2_KI270769v1_alt 47697 4 + 120616 GATT s panTro5.chr2A 3506661 4 + 111504155 GATT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369402 4 + 114371477 GATT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246439 4 + 637652 GATT i gorGor5.CYUI01015435v1 C 0 C 0 s cerAty1.NW_012000820v1 3365678 4 - 10304083 GATT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448600 4 - 107702431 GATT i chlSab2.chr14 C 0 I 4 s calJac3.chr14 3449099 4 - 108792865 GATT i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100599 298 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016874 2 - 111193037 I e rheMac8.chr13 3304098 0 + 108979918 C e nomLeu3.chr19 3041582 193 + 81552678 T a score=1636.000000 s hg38.chr2_KI270769v1_alt 47701 1 + 120616 A s panTro5.chr2A 3506665 1 + 111504155 A i panTro5.chr2A C 0 T 65 s panPan2.chr2A 3369406 1 + 114371477 A i panPan2.chr2A C 0 I 1 s gorGor5.CYUI01015435v1 246443 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 I 4 s rheMac8.chr13 3304098 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016876 1 - 111193037 A i macFas5.chr13 I 2 C 0 s cerAty1.NW_012000820v1 3365682 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448608 1 - 107702431 A i chlSab2.chr14 I 4 C 0 s calJac3.chr14 3449103 1 - 108792865 A i calJac3.chr14 C 0 I 1 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100599 298 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e nomLeu3.chr19 3041582 193 + 81552678 T a score=19769.000000 s hg38.chr2_KI270769v1_alt 47702 10 + 120616 TACCCCATCA s panTro5.chr2A 3506601 10 + 111504155 TACCCCACCA i panTro5.chr2A T 65 C 0 s panPan2.chr2A 3369408 10 + 114371477 TACCCCACCA i panPan2.chr2A I 1 C 0 s gorGor5.CYUI01015435v1 246448 10 + 637652 TCCCCCACCA i gorGor5.CYUI01015435v1 I 4 C 0 s rheMac8.chr13 3304099 10 + 108979918 TCCCCCATCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016877 10 - 111193037 TCCCCCATCA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365683 10 - 10304083 ATCCACATTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448609 10 - 107702431 TCCTGCATCA i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3449105 10 - 108792865 TCCCCCACCA i calJac3.chr14 I 1 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100599 298 - 7082604 T e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e nomLeu3.chr19 3041582 193 + 81552678 T a score=222177.000000 s hg38.chr2_KI270769v1_alt 47712 58 + 120616 CCCCTGGATTAAT-CCCCCATCACCCCTGGATTAATAC--------CCCATCACCCCTGGATTAATC s panTro5.chr2A 3506611 57 + 111504155 CCCCTGGATTAAT-CCCCCATCACCCCAGGATTAATAC--------CCCATCACCCCAGGATTAAT- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369418 57 + 114371477 CACCTGGATTAAT-CCCCCATCACCCCTGGATTAATAC--------CCCATCACCCCAGGATTAAT- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246458 66 + 637652 CCCCTGGATTAAC-CCCTCGCCACCCCTGGATTAATTCCCCTATCACCCATCACCCCTGGATTAACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041389 58 + 81552678 CCCCTGGATTAAT-CCACCACCACCCCTGCATTAATCC--------CCCATCACCCCTGGATTAATC i nomLeu3.chr19 T 193 C 0 s rheMac8.chr13 3304109 58 + 108979918 CTCCTGGATTAAT-CCCCCGTCACCCCTGGATTAATCC--------CCCATCACCCCTGGATTAATC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016887 53 - 111193037 CTCCTGGATTAAT-CCCCCGTCACCCCTGGATTAATCC--------CCCATCACCCCTGGAT----- i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365693 58 - 10304083 CCCCTGGATTAAT-CCCCCATCACCCCTGAATTAATAC--------CCCATCGCCCCTGGATTGATC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448619 59 - 107702431 CCCCTGGATTAATCCCCCCACCACCCCTGGATTGATCC--------CCCATCACCCCTGGATTAACC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3449115 57 - 108792865 CCCCTGGATTAAT-CCCCCACCACCCCTGGATTAACAT--------CCCACCACCCCTGGATTAAC- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100301 58 - 7082604 cccgtgtatgaat-cccccaccacccctggattaacct--------cccaccacccctggattaatc i saiBol1.JH378218 T 298 I 21 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=31754.000000 s hg38.chr2_KI270769v1_alt 47770 17 + 120616 CCCC---CACCACCCCTGGA s panTro5.chr2A 3506668 17 + 111504155 ACCC---CACCACCCCTGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369475 17 + 114371477 ACCC---CACCACCCCTGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246524 17 + 637652 CCCC---CATCATCCCTGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041447 14 + 81552678 CCCC---CATCA---CTGGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304167 4 + 108979918 CCCC---------------- i rheMac8.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365751 20 - 10304083 CCCCCCAAAACACCCCTGGA i cerAty1.NW_012000820v1 C 0 T 122 s chlSab2.chr14 3448678 19 - 107702431 CCCC-ACCACCACCCCTGGA i chlSab2.chr14 C 0 T 165 s calJac3.chr14 3449172 17 - 108792865 CTCC---CACCACCCCTGGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100380 17 - 7082604 CCCC---CACCACCCCTGGA i saiBol1.JH378218 I 21 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5016940 0 - 111193037 C a score=90753.000000 s hg38.chr2_KI270769v1_alt 47787 52 + 120616 T---------TAATCCCCCAATCACCCCTGGATT---------AATCCCC-CCATCAC-------------------------CCCTGGAT---TAA-TA s panTro5.chr2A 3506685 28 + 111504155 T---------TAATCCCCC----------------------------------ATCAC-------------------------CCCAGGAT---TAA-TA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369492 77 + 114371477 T---------TAATCCCCC-ATCACCCCTGGATT---------AATCCCC-CCATGGCCCCCTGGGATTTAACTCCCCAATcacccaggat---taacta i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246541 49 + 637652 T---------TAACCCCCG--TCACCCCTGGATT---------AATACCC-CCACCAG-------------------------CCCTGGAT---TAA--C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041461 53 + 81552678 T---------TAATCCCCCCACCACCCCTGGATT---------AATCCCC-CCATCAC-------------------------CCCTGGAT---TAATCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304171 49 + 108979918 ----------CAATCCCCC-ATCGCCCCTGGATT---------AAT-CCC-CCATCAC-------------------------CCCTGAAT---TAA-TA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5016940 58 - 111193037 ----------CGATCCCCC-ATCACCCCTGGATTAATCCCCCCAAT-CCC-CCATCAC-------------------------TCCTGGAT---TAA-TC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365649 58 - 10304083 TTAATCCCCCCAATCCCCC-ATCACCCCTGGATT---------AAT--CC-ACATTGC-------------------------CCCTGGAT---TAA-TC i cerAty1.NW_012000820v1 T 122 C 0 s chlSab2.chr14 3448532 54 - 107702431 --------TCAACCCCCCC-ATCACCCCTGGATT---------AAT-CCC-CCATTGC-------------------------CCCTGGATTAATAA-TC i chlSab2.chr14 T 165 C 0 s calJac3.chr14 3449189 50 - 108792865 T---------TAACCTCCC-ACCACCCCTGGATT---------AAT-CCC-CCACCAC-------------------------CCCTGGAT---TAA-CC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100397 50 - 7082604 T---------TAACC-CCC-ACCACCCCTGGATT---------AAC-CCCACCACCAC-------------------------CCCTGGAT---TAA-CA i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 116 + 5243153 T e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=54881.000000 s hg38.chr2_KI270769v1_alt 47839 12 + 120616 CCCCATCACCCC s panTro5.chr2A 3506713 12 + 111504155 CCCCATCACCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369569 12 + 114371477 ccccaccacccc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246590 11 + 637652 CCCCATC-CCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041514 12 + 81552678 ACCCACCACCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304220 12 + 108979918 CCCCATCGCCCC i rheMac8.chr13 C 0 T 211 s macFas5.chr13 5016998 12 - 111193037 CCCCGTCACCCC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365707 12 - 10304083 CCCCATCACCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448586 12 - 107702431 CCGCATCACCCC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3449239 12 - 108792865 TCCCACCACCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100447 12 - 7082604 CCCCACCATGCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586412 12 + 5243153 cccCACCACCCC i cebCap1.NW_016107454v1 T 116 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=17039.000000 s hg38.chr2_KI270769v1_alt 47851 5 + 120616 AGGAT s panTro5.chr2A 3506725 5 + 111504155 AGGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369581 5 + 114371477 aggat i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246601 5 + 637652 TGGGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041526 5 + 81552678 TGGAT i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5017010 5 - 111193037 TGGAT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365719 5 - 10304083 TGAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448598 5 - 107702431 TGGAT i chlSab2.chr14 C 0 I 3 s calJac3.chr14 3449251 5 - 108792865 TGGAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100459 5 - 7082604 TAGAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586424 5 + 5243153 TGGAT i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e rheMac8.chr13 3304232 211 + 108979918 T a score=220085.000000 s hg38.chr2_KI270769v1_alt 47856 57 + 120616 TAATACCCCATCACCCCTGGATTAAT-CCCCC---CATCACCCCTGGATTAATCCCCC-ATC s panTro5.chr2A 3506730 59 + 111504155 TAATACCCCACCACCCCTGGATTAATACCCCT---CCTCGCCGCTGGATTAATCCCCCAATC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369586 56 + 114371477 taata-cccaccacccctggattaat--cccc---catcaccccaggattaatagccccacc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246606 57 + 637652 TAATCCCCCACCACCCCTGGATTAAT-CCACC---CATCGCCCCTGGATTAATCCCCC-ATC i gorGor5.CYUI01015435v1 C 0 I 198 s nomLeu3.chr19 3041531 58 + 81552678 TAATCCCCCATCACCTCTGGATTAAT-CCCCC---CACCACCCCTGGATTAATCCACCCACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304021 56 + 108979918 CAATCCCCCATCACTCCTGGATTAAT-CCCCC----ATCACCCCTGGATCGATCCCCC-ATC i rheMac8.chr13 T 211 C 0 s macFas5.chr13 5017015 43 - 111193037 TAATCCCCCATCACCCCTGGATTAAT-CCCCC-----------------CAATCCCCC-ATC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365724 60 - 10304083 TAATACCCCATCGCCCCTGGATTGAT-CCCCCCCAAAACACCCCTGGATTAACccccc-acc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448606 57 - 107702431 TAATCCTGCATCACCCCTGGATTAAT-CCCCC---CACCACCCCTGGATTGATCCCCC-ATC i chlSab2.chr14 I 3 C 0 s calJac3.chr14 3449256 56 - 108792865 TAACCTCCCACCACCCCTGGATTAA--CCTCC---CACCACCCCTGGATTAATCCCCC-ACC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100464 57 - 7082604 TAACCCCCCACCACCCATGGATTAAT-CCCCC---CACCACCCCTGGATTAACCTCCC-ACC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586429 57 + 5243153 TAACCTCCCACCACCCCTGGATTAAT-CCCCC---CACCACCCCTGGATTAACTTCCC-ACC i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=3785.000000 s hg38.chr2_KI270769v1_alt 47913 1 + 120616 A s panTro5.chr2A 3506789 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369642 1 + 114371477 a i panPan2.chr2A C 0 C 0 s nomLeu3.chr19 3041589 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304077 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5017058 1 - 111193037 G i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365784 1 - 10304083 a i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448663 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3449312 1 - 108792865 A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100521 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586486 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e gorGor5.CYUI01015435v1 246663 198 + 637652 I a score=41811.000000 s hg38.chr2_KI270769v1_alt 47914 7 + 120616 CCCCTGG s panTro5.chr2A 3506790 7 + 111504155 CCCCAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369643 7 + 114371477 cccctgg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246861 7 + 637652 CCCCTGG i gorGor5.CYUI01015435v1 I 198 C 0 s nomLeu3.chr19 3041590 7 + 81552678 CCCCTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304078 7 + 108979918 CCCCTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5017059 7 - 111193037 CCCCTGG i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365785 7 - 10304083 cctctgg i cerAty1.NW_012000820v1 C 0 T 113 s chlSab2.chr14 3448664 7 - 107702431 CCCCTGG i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3449313 7 - 108792865 CCCCTGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100522 7 - 7082604 CCCCTGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586487 7 + 5243153 CCCCTGG i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=4664.000000 s hg38.chr2_KI270769v1_alt 47921 1 + 120616 A s panTro5.chr2A 3506797 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369650 1 + 114371477 a i panPan2.chr2A C 0 T 89 s gorGor5.CYUI01015435v1 246868 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041597 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304085 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5017066 1 - 111193037 A i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365679 1 - 10304083 A i cerAty1.NW_012000820v1 T 113 C 0 s chlSab2.chr14 3448671 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3449320 1 - 108792865 A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100529 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586494 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=12012.000000 s hg38.chr2_KI270769v1_alt 47922 2 + 120616 TT s panTro5.chr2A 3506798 2 + 111504155 TT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369562 2 + 114371477 tt i panPan2.chr2A T 89 C 0 s gorGor5.CYUI01015435v1 246869 2 + 637652 TT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041598 2 + 81552678 TT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304086 2 + 108979918 TT i rheMac8.chr13 C 0 I 106 s macFas5.chr13 5017067 2 - 111193037 TT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365680 2 - 10304083 TT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448672 2 - 107702431 TT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3449321 2 - 108792865 TT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100530 2 - 7082604 TT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586495 2 + 5243153 TT i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=33227.000000 s hg38.chr2_KI270769v1_alt 47924 31 + 120616 AATCCCC--CCATCACCCCAGG--ATTAAT--ACCCC s panTro5.chr2A 3506800 31 + 111504155 AAT-ACC--CCACCACCCCAAGGCATTAAT--A-CCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369564 30 + 114371477 aactacc--ccaccaccccagg--attaat--a-ccc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246871 31 + 637652 AAT-CCC--CCACCACCCCTGG--ATTAATCCA-CCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041600 31 + 81552678 AATCCCC--CCACCACCCCTGG--ATTAAT--TCCCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304194 8 + 108979918 ---------------------------AAT--CCCCC i rheMac8.chr13 I 106 C 0 s macFas5.chr13 5017069 8 - 111193037 ---------------------------AAT--CCCCC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365682 29 - 10304083 AATCC----ACATTGCCCCTGG--ATTAAT--CCCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448674 33 - 107702431 AACCCCCCACCACCACCCCTGG--ATTAAt--ccccc i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3449323 30 - 108792865 AA-CCTC--CCACCACCCCTGG--ATTAAT--CCCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100532 30 - 7082604 AA-CACC--CCACCATGCCTAG--ATTAAC--CCCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 586497 31 + 5243153 AATCCCC--CCACCACCTCTGG--ATTAAT--CCCCC i cebCap1.NW_016107454v1 C 0 I 2239 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=11178.000000 s hg38.chr2_KI270769v1_alt 47955 6 + 120616 ATCACC--- s panTro5.chr2A 3506831 6 + 111504155 ACCACC--- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369594 6 + 114371477 accacc--- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246902 6 + 637652 ATCGCC--- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041631 6 + 81552678 GTCACC--- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304202 6 + 108979918 ATCACC--- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5017077 6 - 111193037 ATCACC--- i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365711 6 - 10304083 ATCACC--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448707 6 - 107702431 accacc--- i chlSab2.chr14 C 0 T 117 s calJac3.chr14 3449353 5 - 108792865 ---ACCCC- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100562 6 - 7082604 ---ACCACC i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=7821.000000 s hg38.chr2_KI270769v1_alt 47961 2 + 120616 CC s panTro5.chr2A 3506837 2 + 111504155 CC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369600 2 + 114371477 cc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246908 2 + 637652 CC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041637 2 + 81552678 TC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304208 2 + 108979918 CC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5017083 2 - 111193037 CC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365717 2 - 10304083 CC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448596 2 - 107702431 CC i chlSab2.chr14 T 117 C 0 s saiBol1.JH378218 3100568 2 - 7082604 CC i saiBol1.JH378218 C 0 T 111 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e calJac3.chr14 3449358 0 - 108792865 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=39845.000000 s hg38.chr2_KI270769v1_alt 47963 15 + 120616 AGGATTAATACCC---CA s panTro5.chr2A 3506839 15 + 111504155 AGGATTAATACCC---CA i panTro5.chr2A C 0 I 197 s panPan2.chr2A 3369602 15 + 114371477 tggattaatcccc---ca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246910 14 + 637652 TGGATTAATCCCC---A- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041639 14 + 81552678 TGGATTAATTCCC---C- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304210 15 + 108979918 TGAATTAATACCC---CA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5017085 15 - 111193037 TGAATTAATACCC---CA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365719 15 - 10304083 TGAATTAATACCC---CA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448598 18 - 107702431 TGGATTCATAATCCTGCA i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3449358 15 - 108792865 TGGATTAATCCCC---CA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100459 15 - 7082604 TAGATTAACCCCC---CA i saiBol1.JH378218 T 111 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I a score=33174.000000 s hg38.chr2_KI270769v1_alt 47978 17 + 120616 TCCCCCTTGGATTAACC s panPan2.chr2A 3369617 17 + 114371477 tcaccccaggattaata i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246924 16 + 637652 -TCCCCCTGGATTAACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041653 16 + 81552678 -CACCCCTAGATTAAtc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304225 17 + 108979918 TCGCCCCTGGATTGATC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5017100 7 - 111193037 TCGCCCC---------- i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3365734 17 - 10304083 TCGCCCCTGGATTGATC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448616 17 - 107702431 TCACCCCTGGATTAATC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3449373 16 - 108792865 CCACCCCTGGATTAA-C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100474 17 - 7082604 CCACCCATGGATTAATC i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panTro5.chr2A 3506854 197 + 111504155 I a score=16133.000000 s hg38.chr2_KI270769v1_alt 47995 5 + 120616 CCCCC s panTro5.chr2A 3507051 5 + 111504155 CCCCC i panTro5.chr2A I 197 C 0 s panPan2.chr2A 3369634 5 + 114371477 gcccc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246940 3 + 637652 --CCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041669 5 + 81552678 cctcc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304242 5 + 108979918 CCCCC i rheMac8.chr13 C 0 I 28 s cerAty1.NW_012000820v1 3365751 5 - 10304083 CCCCC i cerAty1.NW_012000820v1 C 0 I 15 s chlSab2.chr14 3448633 5 - 107702431 CCCCC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3449389 5 - 108792865 CTCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100491 5 - 7082604 CCCCC i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5017107 0 - 111193037 C a score=27164.000000 s hg38.chr2_KI270769v1_alt 48000 11 + 120616 ACCACCCCTGG s panTro5.chr2A 3507056 11 + 111504155 ACCACCCCTGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369639 11 + 114371477 accacccctgg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246943 10 + 637652 ATC-CCCCTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041674 11 + 81552678 accacccctgg i nomLeu3.chr19 C 0 T 32 s rheMac8.chr13 3304275 11 + 108979918 ACCACCCCTGG i rheMac8.chr13 I 28 C 0 s chlSab2.chr14 3448638 8 - 107702431 ACCACCCC--- i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3449394 11 - 108792865 ACCACCCCTGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100496 11 - 7082604 ACCACCCCTGG i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365756 15 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5017107 0 - 111193037 C a score=5001.000000 s hg38.chr2_KI270769v1_alt 48011 3 + 120616 ATC s panTro5.chr2A 3507067 3 + 111504155 ATT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369650 3 + 114371477 att i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246953 3 + 637652 ATT i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3304286 3 + 108979918 ATT i rheMac8.chr13 C 0 T 201 s calJac3.chr14 3449405 3 - 108792865 ATT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100507 3 - 7082604 ATT i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448646 0 - 107702431 C e cerAty1.NW_012000820v1 3365756 15 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5017107 0 - 111193037 C e nomLeu3.chr19 3041685 32 + 81552678 T a score=3822.000000 s hg38.chr2_KI270769v1_alt 48014 2 + 120616 AA s panTro5.chr2A 3507070 2 + 111504155 AA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369653 2 + 114371477 aa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246956 2 + 637652 AA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3304088 2 + 108979918 AA i rheMac8.chr13 T 201 C 0 s calJac3.chr14 3449408 2 - 108792865 AA i calJac3.chr14 C 0 I 2 s saiBol1.JH378218 3100510 2 - 7082604 AA i saiBol1.JH378218 C 0 I 87 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448646 0 - 107702431 C e cerAty1.NW_012000820v1 3365756 15 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5017107 0 - 111193037 C e nomLeu3.chr19 3041685 32 + 81552678 T a score=7185.000000 s hg38.chr2_KI270769v1_alt 48016 6 + 120616 TCCCCC s panTro5.chr2A 3507072 6 + 111504155 TCCCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369655 6 + 114371477 tccccc i panPan2.chr2A C 0 T 10 s gorGor5.CYUI01015435v1 246958 6 + 637652 CCCCCC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3304090 6 + 108979918 TCCCCC i rheMac8.chr13 C 0 I 8 s calJac3.chr14 3449412 6 - 108792865 TCCCAC i calJac3.chr14 I 2 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100512 87 - 7082604 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448646 0 - 107702431 C e cerAty1.NW_012000820v1 3365756 15 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5017107 0 - 111193037 C e nomLeu3.chr19 3041685 32 + 81552678 T a score=9912.000000 s hg38.chr2_KI270769v1_alt 48022 18 + 120616 CAATCCCCCTGGGTTAAT s panTro5.chr2A 3507078 18 + 111504155 CATCACCCCTGGATTAAT i panTro5.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 246964 16 + 637652 --ATCCCCCTGGGTTAAT i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3304104 18 + 108979918 CATCACTCCTGGATTAAT i rheMac8.chr13 I 8 C 0 s calJac3.chr14 3449418 15 - 108792865 ---CACCCCTGGATTAAC i calJac3.chr14 C 0 I 1 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100512 87 - 7082604 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448646 0 - 107702431 C e cerAty1.NW_012000820v1 3365756 15 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5017107 0 - 111193037 C e nomLeu3.chr19 3041685 32 + 81552678 T e panPan2.chr2A 3369661 10 + 114371477 T a score=476.000000 s hg38.chr2_KI270769v1_alt 48040 1 + 120616 C s panTro5.chr2A 3507096 1 + 111504155 C i panTro5.chr2A C 0 I 1558 s gorGor5.CYUI01015435v1 246980 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3304122 1 + 108979918 C i rheMac8.chr13 C 0 I 1 s calJac3.chr14 3449434 1 - 108792865 T i calJac3.chr14 I 1 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100512 87 - 7082604 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448646 0 - 107702431 C e cerAty1.NW_012000820v1 3365756 15 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5017107 0 - 111193037 C e nomLeu3.chr19 3041685 32 + 81552678 T e panPan2.chr2A 3369661 10 + 114371477 T a score=2633.000000 s hg38.chr2_KI270769v1_alt 48041 11 + 120616 CCCACCACCCG s gorGor5.CYUI01015435v1 246981 11 + 637652 CCCCATCCCCC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3304124 11 + 108979918 CCCGTCACCCC i rheMac8.chr13 I 1 I 97 s calJac3.chr14 3449435 11 - 108792865 CTCACCACCCC i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100512 87 - 7082604 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448646 0 - 107702431 C e cerAty1.NW_012000820v1 3365756 15 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e macFas5.chr13 5017107 0 - 111193037 C e nomLeu3.chr19 3041685 32 + 81552678 T e panPan2.chr2A 3369661 10 + 114371477 T e panTro5.chr2A 3507097 1558 + 111504155 I a score=13843.000000 s hg38.chr2_KI270769v1_alt 48052 16 + 120616 TGGATTGATCCCCCCT s gorGor5.CYUI01015435v1 246992 16 + 637652 TGAGTTAATCCCCCCC i gorGor5.CYUI01015435v1 C 0 I 2 s rheMac8.chr13 3304232 16 + 108979918 TGGATTGATCCCCCCC i rheMac8.chr13 I 97 I 4 s macFas5.chr13 5017107 16 - 111193037 TGGATTGATCCCCCCC i macFas5.chr13 C 0 I 4 s chlSab2.chr14 3448646 14 - 107702431 TGGATTGATCCCCC-- i chlSab2.chr14 C 0 I 2 s calJac3.chr14 3449446 16 - 108792865 TGGATTAATCCCCCAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3100599 5 - 7082604 ----------CCCCA- i saiBol1.JH378218 I 87 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365756 15 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e nomLeu3.chr19 3041685 32 + 81552678 T e panPan2.chr2A 3369661 10 + 114371477 T e panTro5.chr2A 3507097 1558 + 111504155 I a score=21558.000000 s hg38.chr2_KI270769v1_alt 48068 11 + 120616 CACCCCTGGat s gorGor5.CYUI01015435v1 247010 11 + 637652 CACCCCTGGAT i gorGor5.CYUI01015435v1 I 2 C 0 s nomLeu3.chr19 3041653 11 + 81552678 CACCCCTAGAT i nomLeu3.chr19 T 32 C 0 s rheMac8.chr13 3304252 11 + 108979918 CACCCCTGGAT i rheMac8.chr13 I 4 C 0 s macFas5.chr13 5017127 11 - 111193037 CACCCCTGGat i macFas5.chr13 I 4 C 0 s chlSab2.chr14 3448662 11 - 107702431 CACCCCTGGAT i chlSab2.chr14 I 2 C 0 s calJac3.chr14 3449462 11 - 108792865 CACCCCTGGAT i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100604 0 - 7082604 C e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365756 15 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369661 10 + 114371477 T e panTro5.chr2A 3507097 1558 + 111504155 I a score=15896.000000 s hg38.chr2_KI270769v1_alt 48079 9 + 120616 taatccccc s panTro5.chr2A 3508655 9 + 111504155 TAATCCCCC i panTro5.chr2A I 1558 C 0 s gorGor5.CYUI01015435v1 247021 9 + 637652 TGATCCCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041664 8 + 81552678 TAAtccct- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304263 9 + 108979918 TAACCCCCC i rheMac8.chr13 C 0 I 2 s macFas5.chr13 5017138 9 - 111193037 taacccccc i macFas5.chr13 C 0 I 2 s chlSab2.chr14 3448673 9 - 107702431 TAACCCCCC i chlSab2.chr14 C 0 I 15 s calJac3.chr14 3449473 9 - 108792865 TAACCTCCC i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100604 0 - 7082604 C e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e cerAty1.NW_012000820v1 3365756 15 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e panPan2.chr2A 3369661 10 + 114371477 T a score=1859.000000 s hg38.chr2_KI270769v1_alt 48088 4 + 120616 catc- s panTro5.chr2A 3508664 4 + 111504155 CATC- i panTro5.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 247030 4 + 637652 CATC- i gorGor5.CYUI01015435v1 C 0 I 1 s rheMac8.chr13 3304274 4 + 108979918 CACC- i rheMac8.chr13 I 2 I 1 s macFas5.chr13 5017149 4 - 111193037 cacc- i macFas5.chr13 I 2 I 1 s calJac3.chr14 3449482 4 - 108792865 -ACCA i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100604 0 - 7082604 C e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448682 15 - 107702431 I e cerAty1.NW_012000820v1 3365756 15 - 10304083 I e macNem1.NW_012011978v1 3410442 13 + 3644372 I e nomLeu3.chr19 3041672 0 + 81552678 C e panPan2.chr2A 3369661 10 + 114371477 T a score=14904.000000 s hg38.chr2_KI270769v1_alt 48092 8 + 120616 cccctggg s panTro5.chr2A 3508668 8 + 111504155 CTCCTGGA i panTro5.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 247035 8 + 637652 CCCCTGGA i gorGor5.CYUI01015435v1 I 1 C 0 s rheMac8.chr13 3304279 8 + 108979918 CCCCTGGA i rheMac8.chr13 I 1 C 0 s macFas5.chr13 5017154 8 - 111193037 cccctgga i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3410455 8 + 3644372 cccctgga i macNem1.NW_012011978v1 I 13 C 0 s calJac3.chr14 3449486 8 - 108792865 CCCCTGGA i calJac3.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3100604 0 - 7082604 C e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 998373 0 + 1565135 C e chlSab2.chr14 3448682 15 - 107702431 I e cerAty1.NW_012000820v1 3365756 15 - 10304083 I e nomLeu3.chr19 3041672 0 + 81552678 C e panPan2.chr2A 3369661 10 + 114371477 T a score=95545.000000 s hg38.chr2_KI270769v1_alt 48100 20 + 120616 ttaatcccccatcacccctg s panTro5.chr2A 3508676 20 + 111504155 TTAAtcccccaccacccctg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369651 11 + 114371477 ttaatccccca--------- i panPan2.chr2A T 10 C 0 s gorGor5.CYUI01015435v1 247043 20 + 637652 TTAAtcccccaccacccctg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041672 12 + 81552678 --------ccaccacccctg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3304287 20 + 108979918 TTAAccccccaccacctctg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5017162 20 - 111193037 ttaaccccccaccacctctg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410463 20 + 3644372 ttaaccccccaccacctgtg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365771 20 - 10304083 TTAACcccccaccacctctg i cerAty1.NW_012000820v1 I 15 C 0 s chlSab2.chr14 3448697 20 - 107702431 TTAAtcccccaccacctctg i chlSab2.chr14 I 15 C 0 s manLeu1.NW_012104432v1 998373 20 + 1565135 ttaatcccccaccacctctg i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3449494 20 - 108792865 TTAATCCCCCACCACCCCTG i calJac3.chr14 C 0 I 1638 s saiBol1.JH378218 3100604 12 - 7082604 --------CCACCACTCCTG i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=5229005.000000 s hg38.chr2_KI270769v1_alt 48120 866 + 120616 ggagcttggagtctttccattgtctccatagtttccccttttcca-aaggtcttatagttggaatcatacagtatgtggtc--ctcagattggcttcgttcacttaggaatgtgcatttagggttccgctgtctttttct---gcttgatagtacgtttcttatctctgaataatattccattttatgtatataccatagcttatttatccatttctctgttgaagaacat--cttggttgcttctggtttttgacaattatgaataaagctactataaacattctttttcagggttttgtgtagatacaagttttatcacctttatcag---------ttccaatccttgggtaaatctctaggactgtgattgctggatcttatggtaaaagtattcttagccttgtaaatatctgccaagcatcttccaaaactttcatactattttgctttcctaagagcaatcaatgagagttcctattgattcacatcctcagccagcttttggtattgtcattttttggatttttcgctattctga-taggtgtgtagtgttacctcattg------ttttaatttgcagttccctaatgacatatgatgatgagcatctttttatatgcttgttattgataaatctttattggtgatatgtctgttcagatctgttgcccatttattaattgggtt----gttttctcattg------------------------tctgttttttg-gagacagagtctcactt-tgtcacccaggctggagtccagtggtgcagttatggcccactgcagcctcaagcccctgggcttaagcagccttcccacctcaaccaatggagtagctaggactgtaggcacac-------ctggctagtttttgtattttttgtagaaacaaaaaaaagcga- s panTro5.chr2A 3508696 873 + 111504155 ggagcttggagtctttccattgtctccatagtttcccctttttca-aaggtcttatagttggaatcatacagtatgtggtc--ctcagattggcttcgttcacttaggaatgtgcatttagggttccgctgtctttttct---gcttgatagtacgtttcttatctctgaataatattccattttatgtatataccatagcttatttatccatttctctgttgaagaacat--cttggttgcttctggtttttgacaattacgaataaagctactataaacattctttttcagggttttgtgtagataaaagttttatcacctttatcag---------ttccaatccttgggtaaatctctaggactgtgattgctggatcttatggtaaaagtattcttagccttgtaaatatctgccaagcatcttccaaaactttcatactattttgctttcctaagagcaatcaatgagagttcctgttgattcacatcctcagccagcttttggtattgtcattttttggatttttcgctattctga-taggtgtgtagtgttatctcattg------ttttaatttgcagttccctaatgacatatgatgatgagcatctttttatatgcttgttattgataaatctttattggtgatatgtctgttcagatctgttgcccatttattaattgggtt----gttttctcattg------------------------tctgttttttg-gagacagagtctcactt-tgtcacccaggctggagtccagtggtgcagttatggcccactgcagcctcaagcccctggacttaagcagccttcccacctcaaccaatggagtagcaaggactgtaggcacacaccacacctggctagtttttgtattttttgtagaaacaaaaaaaagcga- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3369662 861 + 114371477 -----------tctttccattgtctccatagtttcccctttttca-aaggtcttatagttggaatcatacagtatgtggtc--ctcagattggcttcgttcacttaggaatgtgcatttagggttccgctgtctttttct---gcttgatagtacgtttcttatctctgaataatattccattttatgtatataccatagcttatttatccatttctctgttgaagaacat--cttggttgcttctggtttttgacaattacgaataaagctactataaacattctttttcagggttttgtgtagatacaagttttatcacctttatcag---------ttccaatccttgggtaaatctctaggactgtgattgctggatcttatggtaaaagtattcttagccttgtaaatatctgccaagcatcttccaaaactttcatactattttgctttcctaagagcaatcaatgagagttcctgttgattcacatcctcagccagcttttggtattgtcattttttggatttttcgctattctga-taggtgtgtagtgttatctcattg------ttttaatttgcagttccctaatgacatatgatgatgagcatctttttatatgcttgttattgataaatctttattggtgatatgtctgttcagatctgttgcccatttattaattgggtt----gttttcgcattg------------------------tctgttttttg-gagacagagtctcactt-tgtcacccaggctggagtccagtggtgcagttatggcccactgcagcctcaagcccctggacttaagcagccttcccacctcaaccaatggagtagcaaggactgtaggcacacaccacacctggctagtttttgtattttttgtagaaac-aaaaaaagcga- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 247063 873 + 637652 ggagcttggagtctttccattgtctccatagtttccccttttcca-aaggtctaatagttggaatcatacagtatgtggtc--ctcagattggcttcgttcacttaggaatgtgcatttatggttccgctgtctttttct---gcatgatagtacatttcttatctctgaataatattccattttatgtatataccatagcttatgtatccatttctctgttgaagaacat--cttggttgcttctggtttttgacaattacgaataaagctactataaacattcttttgcagggttttgtgtagatacaagttttatcacctttatcag---------ttccaatccttgggtaaatctctaggactgtgattgctggatcttatggtaaaagtattcttagccttgtaaatatctgccaagcatcttccaaaactttcatactattttgctttcctaagagcaatcaatgagagttcctgttgattcacatcctcagccagcctttggtattgtcattttttggatttttcgctattctga-taggtgtgtagtgttatctcattg------ttttaatttgcagttccctaatgacatatgatgatgagcatctttttatatgcttgttattgataaatctttattggtgatatgtctgttcagatctgttgcccatttattaattgggtt----gttttctcattg------------------------tctgttttttg-gagacagagtctcactt-tgtcacccaggctggagtccagtggtgcagttatggcccactgcagcctcaagcccctgggcttaagcagccttcccacctcaaccaacggagtagctaggactgtaggcacacaccacacctggctagtttttgtattttttgtagaaacaaaaaaaagtga- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3041684 882 + 81552678 ggaacatggagtcttcccattgtctccatagtttcaccttttcca-aaggttttatagttggaatcatacagtatgtggtc--ctcagattgggttcattcacttaggaacgtgcgtttatggttccgccgtctttttct---gcttgatagtacatttcttatctctgaataatattccattttatgtgtataccatagcttatttatccatttctctgttgaagaacat--cttggttgcttctggtttttgacaattacgaataaagctgctgtaaacattcttttgcagggttttgtgtagacacaagttttatcacctttatcagatacaagttttccaatccttgggtaaatccctaggactgtgattgttggatcttatggtaaaagtattcttagccttgtaaatatctgccaagcatcttccaaagctttcatactattttgctttcctgagagcaatgaatgagagttcccgttgattcatatcctcagccagcctttggtattgtcattttttggatttttcgctattctga-taggtgtgtagtgttatctcattg------ttataatttgcagttccctaatgacatatgatgatgggcatctttttatatgcttgtcattgataaatctttattagtgaggtgtctgttcagatctgttgcccatttattaattgggtt----gttttcttattg------------------------tctattttttg-gagacagagtctcactt-tgtcgcccaggctggagtccagtggtgcagttacggcccaccgcagcctcaagcccctgggcttaagcagccttcccacctcagccaatggagtagctgggactgtaggcacacaccacacctggctagtttttgtattttttgtagaaacAAAAAAAAGCGA- i nomLeu3.chr19 C 0 M 510 s rheMac8.chr13 3304307 862 + 108979918 ggaacttggagtctttccattgtctccatagtttcaccttttcca-aaggtcttatagtgagaatcatacggtgtatggtc--ctcaggttggcttcgttcacttaggaatgtgcatttatggttccactgtctttttct---ggttgatattacatttattatctctgaataatattccgctgtgtgtatataccacagcttatttatccgttcctctgttgaagaatagaacttggttgcttctggtttttgacaattacgaataaagctgctataaacattcttttgcagggttttgtgtagacacaagtt-------------------------ttccaatccttgggtaaccccctaggactgtgattgctggattttatggtaaaagtattcttagctttgtaaatatctgccaagcatcttccaaggctttcatactatttggctttcctaagagcaatgaatgagagttcctgttgattcacatcctcaaccagcctttggtattgtcattttttggatttttcactattctga-taggtgtatagtgtcatctcattg------ttttaatttgcagttccctaatgacatatgatgatgagtatc--tttatatgcttgtcattgataaatctttattggtgaggtgtctgttcagatctgttgcccatttattagttgggttattcgttttcttattg------------------------tctgttttttgttttttggagtctcactc-tgtcgcccaggctggagtccagttgtgcagttatggctcactgcagcctcgagcccctgggcttaagcagtcttcccacctcaaccaacggagtagctgggactgtaggcacacaccacacctggctagtttttgtgttttttgtagaaacCAAAAAaagcaa- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5017182 862 - 111193037 ggaacttggagtctttccattgtctccatagtttcaccttttcca-aaggtcttatagtgagaatcatacggtgtatggtc--ctcaggttggcttcgttcacttaggaatgtgcatttatggttccactgtctttttct---ggttgatattacatttattatctctgaataatattccgctgtgtgtatataccacagcttatttatccgttcctctgttgaagaatagaacttggttgcttctggtttttgacaattacgaataaagctgctataaacattcttttgcagggttttgtgtagacacaagtt-------------------------ttccaatccttgggtaaccccctaggactgtgattgctggattttatggtaaaagtattcttagctttgtaaatatctgccaagcatcttccaaggctttcatactatttggctttcctaagagcaatgaatgagagttcctgttgattcacatcctcaaccagcctttggtattgtcattttttggatttttcactattctga-taggtgtatagtgtcatctcattg------ttttaatttgcagttccctaatgacatatgatgatgagtatc--tttatatgcttgtcattgataaatctttattggtgaggtgtctgttcagatctgttgcccatttattagttgggttattcgttttcttattg------------------------tctgttttttgttttttggagtctcactc-tgtcgcccagactggagtccagttgtgcagttatggctcactgcagcctcgagcccctgggcttaagcagtcttcccacctcaaccaacggagtagctgggactgtaggcacacaccacacctggctagtttttgtgttttttgtagaaaccaaaaaaagcaa- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3410483 861 + 3644372 ggaacttggagtctttccattgtctccatagtttcaccttttcca-aaggtcttatagtgagaatcatacggtgtatggtc--ctcaggttggcttcgttcacttaggaatgtgcatttatggttccactgtctttttct---ggttgatagtacatttattatctctgaataatattccgctgtgtgtatataccacagcttatttatccgttcctctgttgaagaatagaacttggttgcttctggtttttgacaattacgaataaagctgctataaacattcttttgcagggttttgtgtagacacaagtt-------------------------ttccaatccttgggtaactccctaggactgtgattgctggattttatggtaaaagtattcttagctttgtaaatatctgccaagcatcttccaaggctttcatactatttggctttcctaagagcaatgaatgagagttcctgttgattcacatcctcaaccagcctttggtattgtcattttttggatttttcactattctga-taggtgtatagtgtcatctcattg------ttttaatttgcagttccctaatgacatatgatgatgagtatc--tttatatgcttgtcattgataaatctttattggtgaggtgtctgttcagatctgttgcccatttattagttgggttattcgttttcttattg------------------------tctgttttttg-gagacagagtctcactc-tgtcgcccaggctggagtccagttgtgcagttatggctcactgcagcctcgagcccctgggcttaagcagtcttcccacctcaagcaacggagtagctgggactgtaggcacacaccacacctggctagtttttgtgttttttgtagaaacCAAAAAaagcaa- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3365791 861 - 10304083 ggaacttggagtctttccattgtctccatagtttcaccttttcca-aaggtcttatagtgagaatcatacagtgtatggtc--ctcaggttggcttcgttcacttaggaatgtgcatttatggttccactgtctttttct---ggttgataatacatttattatctctgaataatattccactgtgtgtatataccacagcttatttatccattccgctgttgaagaatagaacttggttgcttctggtttttgacaattacgaataaagctgctataaacattcttttgcagggttttgtgtagacacaagtt-------------------------ttccaatccttgggtaactccctaggactgtgattgctggattttatggtaaaagtattcttagctttgtaaatatctgccaagcatcttccaaggctttcatactattttgctttcctaagagcaatgaatgagagttcctgttgattcacatcctcaaccagcctttggtgttgtcattttttggatttttcactattctga-taggtgtatagtgtcatctcattg------ttttaatttgcagttccctaatgacatatgatgatgagcatc--tttatatgcttgtcattgataaatctttattggtgaggtgtctgttcagatctgttgcccatttattagttgggttattcgttttcttattg------------------------tctgttttttg-gagacagagtctcactc-tgtcgcccaggctggagtccagttgtgcagttatggctcactgcagcctcgagcccctgggcttaagcagtcttcccacctcagccaacggagtagctgggactttaggcacacaccacacctggctagtttttgtgttttttgtagaaacCAAAAAaagcaa- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3448717 859 - 107702431 ggaacttggagtctttccattgtctccatagtttcaccttttcca-aaggtcttatagtgagaatcatacagtgtgtggtc--ctcaggttggcttcgttcacttaggaatgtgcatttatggttccactgtctttttct---ggttgatagtacatttcttatctctgaataatattccggtgtgtgtatataccacagcttatttacgcattcctctgttgaagaatagaacttggttgcttctggtttttgacaattatgaataaagctgctataaacattcttttgcaaggttttgtgtagacacaagtt-------------------------ttccaatccttgggtaactccctaggactgtgattgctggatcttatggtaaaagtattcttagctttgtaaatatctgccaagcatcttccaaggctttcatactattttgctttcctaagggcaatgaatgagagttcctgttgattcacatcctcaaccagcctttggtattgtcattgtttggatttttcactattctga-taggtgtagagtgtcatctcgttg------ttttaatttgcagttccctaatgac--atgatgatgagcatc--tttatgtgcttctcattgataaatcttcattggtgaggtgtctgttcagatctgttgcccatttattaattgggttatttgttttcttattg------------------------tctgttttttg-gagacagagtctcactc-tgtcgcccaggctggagtccagttgtgcagttacggctcactgcagcctcgagcccctgggcttaagcagtcttcccacctcaaccaacggagtagctgggactataggcacacaccacacctggctagtttttgtgttttttgtagaaaccaaaaaaagcaa- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 998393 862 + 1565135 ggaacttggagtctttccattgtctccatagtttcaccttttcca-aaggtcttatagtgagaatcatacagtgtatggtc--ctcaggttggcttcgttcacttaggaatgtgcatttatggttccactgtctttttct---ggttgataatacgtttattatctctgaataatattccgctgtgtgtatataccacagcttatttatccattcctctgttgaagaatagaacttggttgcttctggtttttgacaattacgaataaagctgctataaacattcttttgcagggttttgtgtagacacaagtt-------------------------ttccaatccttgggtaactccctaggactgtgattgctggattttatggtaaaagtattcttagctttgtaaatatctgccaagcatcttccaaggctttcatactattttgctttcctaagaacaatgaatgagagttcctgttgagtcacatcctcaaccagcctttggtattgtcattttttggatttttcactattctgattaggtgtatagtgtcatctcattg------ttttaatttgcagttccctaatgacatatgatgatgagcatc--tttatatgcttgtcattgataaatctttattggtgaggtgtctgttcagatttgttgcccatttatcagttgggttattcgttttcttattg------------------------tctgttttttg-gagacagagtctcactc-tgtcgcccaggctggagtccagttgtgcagttatggctcactgcagcctcgagcccctgggcttaagcagtcttcccacctcagccaacggagtagctgggactttaggcacacaccacacctggctagtttttgtgttttttgtagaaaccaaaaaaagcaa- i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3451152 836 - 108792865 GGAATGTCGAGTCtttccatt---------gtttcacattttccagaaggccttagagttggactcacaccgtatgtactgttttcagattggcttcattcacttaggaatgtgcatttatgggcccaccatctctttttctggtttgatagtacatttcttatctgtgaataatattcccttgtatggatataccacagcttatttttccactcctctgttgaagaatgt--cttggttgcttctggtttttgacaattacaaataaaactgctataaacatttttttgcagggttttgtgtagatacaagtt-------------------------ttccaatccttgggtaaatccctggggtcgtgattgctggatcttacagtgaaagtatccttagctctgtaaatatctgccaagcatcttccaaagctttcacactgttttgcattcctaagagcaatgaatgagagttcctgttga---------------------------tgttattttttggatttttagctattctaa-taggtgcgtagtattatctcattgttttaattttaatttgcaattccctaatgacatatgatga---gcatctttttatatgcttgtcattgataaatctttattcgcaagctgtctgttcagatctgttgctt----attaattgggtt----gttttcttattgtGGGtttt----------------ttttttttttg-gagaccgagtctcactcttgtctcccaggttggagtgcagtggtgcagtcatggttcactgcagcctccagcctctgtgcttaagcagtcttcccacctcaactaatggagtagccaggaccacaggcacacaccacacctggctagtttttatattttttgtagaaaAAAAAAAAAAAAAA i calJac3.chr14 I 1638 C 0 s saiBol1.JH378218 3100616 854 - 7082604 GGAACGTCAAGTCCTtccatt---------gtttcacgttttccagaaggccttagagttggactcacacagtatgtagtcttttcagattggcctcgttcacttaggaatgtgcatttataggtccaccatctctttttctggtttgatagtacatttcttatccgtgaataatattcccttgtatggatataccacagcttatgtatccacccctctactgaagaatat--gttggttgcttctggtttttgacaattacaaataaaactgctataaacatttttttgcagggttttgtgtagatacaagtt-------------------------ttccaatctttgggtaaatccctaggactgtgattgctggatcttacagtaaaagtactcttagctttgtaaatatctgccaggcgtcttccaaagctttcacactgttttgcattcctaagagcaatgaatgagagttcctgttga---------------------------tgttattttttggatttttagctattctaa-taggtgtgtagtgttatctcattgttttcattttaatttgcagttccctaatgacatatgatga---gcatctttttatatgcttgtaattgataaatctttattcgcaagctgtctgttcagatctgttgcttattgattaattgggtt----gttttcttgttgtGGttttttttgtttttgtttttgttttttttttt-gagacagagtctcactcttgtctcccaggttggagtgcggtggtgcagtcatggttcactgcagcctccagcctctgtgcgtaagcagtcttcccacctcaaccagtggagtagctgggaccacaggcacacaccacacctggttaatttttatactttttgtagggaAAAAAAAAAAAG-- i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=1478358.000000 s hg38.chr2_KI270769v1_alt 48986 282 + 120616 tcagctcgcctcagcctc--------------------------------cccgcgtgctgggatcccaggcatcagccaccatacctggcctgttgttgatttttaagaattcttcatatatgttgaatacaagttctttatcagataggtgttttacagctattttcttcctatctgtgacttgtctcttcattactttaatactacgttggacagagcatacgtgtttaattttaatgaagtccaacttactgatttttttc-tttcatggatggtgtttttggtgttgtatctaaaagattatcagcaaac s panTro5.chr2A 3509569 282 + 111504155 tcagctcgcctcagcctc--------------------------------cccgcgtgctgggatcccaggcatcagccaccatacctggcctgttgttgatttttaagaattcttcatatatgttgaatacaagttctttatcagataggtgttttacagatattttcttcctatctgtgacttgtctcttcattactttaatactacgttggacagagcatacgtgtttaattttaatgaagtccaacttactgatttttttc-tttcatggattgtgtttttggtgttgtatctaaaagattatcagcaaac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3370523 282 + 114371477 tcagctcgcctcagcctc--------------------------------cccgcgtgctgggatcccaggcatcagccaccatacctggcctgttgttgatttttaagaattcttcatatatgttgaatacaagttctttatcagataggtgttttacagatattttcttcctatctgtgacttgtctcttcattactttaatactacgttggacagagcatacgtgtttaattttaatgaagtccaacttactgatttttttc-tttcatggattgtgtttttggtgttgtatctaaaagattatcagcaaac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 247936 282 + 637652 tcagctcgcctcagcctc--------------------------------cctgcgtgctgggatcccaggcatcagccaccatacctggcctgttgttgatttttaagaattcttcatatatgttgaatacaagttctttatcagataggtgttttacagatattttcttcctatgtgtgacttgtctcttcattactttaatactacgttggacagagcatacgtgtttaattttaatgaagtccaacttactgatttttttc-tttcatggattgtgtttttggtgttgtatctaaaagattatcagcaaac i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3305169 283 + 108979918 tcagtttgcttcagcctc--------------------------------cccacctgctgggatcacaggcatcagccaccatacctggcctgttgttgatttttaaggattctttgtatacgttggatacaagttctttattagataggtgttttacaaatattttcttcctatctgtgacttgtctcttcattactttaatactacgttttacagagcatatgtttttaattttaatgaagtccagcttactgatttttttcttttcatggattatgtttttggtgttgtatctgaaagattatcaacaaac i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5018044 283 - 111193037 tcagtttgcttcagcctc--------------------------------cccacctgctgggatcacaggcatcagccaccatacctggcctgttgttgatttttaaggattctttgtatacgttggatacaagttctttattagataggtgttttacaaatattttcttcctatctgtgacttgtctcttcattactttaatactacgttttacagagcatatgtttttaattttaatgaagtccagcttactgatttttttcttttcatggattatgtttttggtgttgtatctgaaagattatcaacaaac i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3411344 283 + 3644372 tcagtttgcttcagcctc--------------------------------cccacctgctgggatcacaggcatcagccaccatacctggcctgttgttgatttttaaggattctttgtatatgttggatacaagttctttattagataggtgttttacaaatattttcttcctatctgtgacttgtctcttcattactttaatactacgttttacagagcatatgtttttaattttaatgaagtccagcttactaatttttttcttttcatggattatgtttttggtgttgtatctgaaagattatcaacaaac i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3366652 283 - 10304083 tcagtttgcttcagcctc--------------------------------cccacctgctgggatcacaggcatcagccaccatacctggcctgttggtgatttttaagaattctttgtatatgttggatacaagttctttattagataggtgttttacaaatattttcttcctatctgtgacttgtctcttcattactttaatactacgttttacagagcatatgtttttaattttaatgaagtccagcttactgatttttttcttttcatggattatgtttttggtgttgtatctaaaagattatcaacaaac i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3449576 283 - 107702431 tcagtttgcttcagcctc--------------------------------cccacctgctgggatcacaggcatcagccaccatacttggcctgttgttgatttttaagaattctttgtatatgttggatacaagttctttattagataggtgttttacaaatattttcttcctatctgtgacttgtctcttcgttactttaatactacgttttacagagcatacgtttttaatgttaatgaagtccagcttactgatttttttcttttcatggattatgtttttggtgttgtatctaaaagattatcaacaaac i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 999255 283 + 1565135 tcagtttgcttcagcctc--------------------------------cccacctgctgggattacaggcatcagccaccatacctggcctgttgttgatttttaagaattctttgtatatgttggatacaagttctttattagataggtgttttacaaatattttcttcctatctgtgacttgtctcttcgttactttaatactacgttttacagagcatacgtttttaattttaataaagtccagcttgctgatttttttcttttcatggattatgtttttggtgttgtatctaaaagattatcaacaaac i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3451988 310 - 108792865 CCTGCTTGCCTAAGTTTTGGTATTTTTTGTAGAAACAAATGAAAAAGCAGTTTACATgctgggatcacaggcatgagccaccacacctggccTGTTGTTGATTTTTAagaattctttgtacatgttggatacaggttcttaatcagataggtgttttagaaatattttcttc----ctgtgacttgtctcctcgtcactttaacactacattttagagaggatgcatttttaattttaatgaagtccaccttactgatttttctc-tgtcatgaattatgtttttggtgttacatcgaaaaacttattcgcaaac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3101470 309 - 7082604 -CTGCTTGCCTAACTTTTTGTATTTTTTGTAGAAACC----AAAAAGCAATTTGCATgctgggatcacaggcatgagccaccacacctggccCATTGTTGATTTTTAagaattcttggtatatgttggatacaggttctttatcagataggtgttttacaaatattttcttcctatctgtgacttgtctcttcatcgctttaacactacattttacagaggatacatttttaattttaatgaagtccaacttactgatttttttc-tgtcatggattgtgtttttggtgttgtatctaaaaacttatgcacaaac i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 560352 4425 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e nomLeu3.chr19 3042566 510 + 81552678 M a score=2108725.000000 s hg38.chr2_KI270769v1_alt 49268 390 + 120616 ccaggtcactcagattttcatctgtgttctgttctagaagttgtatagtttttgcactttacatgta-gtctgttattg-----gagttcattttggggtaagatgtaagatctgtgtctagattcatt-------tttttttttt---catgtggacgtccagttgtcccagcaccatttttggaaaaacctgtcctttctccattgaattacctttattcctttgtcagagatcaaactgactatatttgtgaggaccaatttcttgtctttctgctctgggccactgatctatttgtccgttctttttctaggaccacacagtcacccagtcttttttacagtagctttagagtagctct-gtaaggtgggtagtgtcagcctgccagatttgctc-----tctttgat s panTro5.chr2A 3509851 393 + 111504155 ccaggtcactcagattttcatctgtgttctgttctagaagttttatagtttttgcactttacatgta-gtctgttattg-----gagttaattttggggtaagatgtaagatgtgtgtctagattcatt-------tttttttttttttcatgtggacgtccagttgtcccagcaccatttttggaaaaacctgtcctttctccattgaattacctttattcctttgtcagagatcaaactgactatatttgtgaggaccaatttcttgtctttctgctctgggccactgatctatttgtccgttctttttctaggaccacacagtcacccagtcttttttacagtagctttagagtagctct-gtaaggtgggtagtgtcagcctgccagatttgctc-----tctttgat i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3370805 392 + 114371477 ccaggtcactcagattttcatctgtgttctgttctagaagttttatagtttttgcactttacatgta-gtctgttattg-----gagttaattttggggtaagatgtaagatctgtgtctagattcttt-------tttttttttt-ttcatgtggacgtccagttgtcccagcaccatttttggaaaaacctgtcctttctccattgaattacctctattcctttgtcagagatcaaactgactatatttgtgaggaccaatttcttgtctttctgctctgggccactgatctatttgtccgttctttttctaggaccacacagtcacccagtcttttttacagtagctttagagtagctct-gtaaggtgggtagtgtcagcctgccagatttgctc-----tctttgat i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 248218 388 + 637652 ccacgtcactcagattttcatctgtgttctgttctcgaagttttatagtttttgcactttacatgta-gtctgttattg-----gagttaattttggggtaagatgtaagatctgtgtctagattcatt-------tttttttt-----catgtggacgtccagttgtcccagcaccatttttgtaaaaacctgtcctttctccattgaattacctttattcctttgtcagagatcaaactgactatatttgtgaggaccagtttcttgtctttctgctctgggccactgatctatttgtccgttctttttctaggaccacacagtcacccagtcttttttacagtagctttagagtagctct-gtaaggtgggtagtgtcagcccgccagatttgctc-----tctttgat i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3305452 382 + 108979918 ccaggtcacctagattttcatctgtgttctgttctaaaagttttataatttttgcactttacatgtaggtctgttattg-----gagttaatttttgtgtaagatgtaagatctgtgtctagattcatt-------ttttt--------catgtggacgtccagttgtcccagcaccatttttggaaaagcctgttctttctccattgcatttcctttattcgtctgtcacagatcaaactgactatatttgtgaggagcaatttcttgtctttctgctcggggccactgatctatttgtccgttctttctctaggaccacacagtcacccagtc-tttttacagtagctttcgagtagctct--caaggtgggtagtctcagccctccagatttgctc-----tcttta-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5018327 382 - 111193037 ccaggtcacctagattttcatctgtgttctgttctaaaagttttataatttttgcactttacatgtaggtctgttattg-----gagttaatttttgtgtaagatgtaagatctgtgtctagattcatt-------ttttt--------catgtggacgtccagttgtcccagcaccatttttggaaaagcctgttctttctccattgcatttcctttattcgtctgtcacagatcaaactgactatatttgtgaggagcaatttcttgtctttctgctcggggccactgatctatttgtccgttctttctctaggaccacacagtcacccagtc-tttttacagtagctttcgagtagctct--caaggtgggtagtctcagccctccagatttgctc-----tcttta-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3411627 382 + 3644372 ccaggtcacctagattttcatctgtgttctgttctaaaagttttataatttttgcactttacatgtaggtctgttattg-----gagttaatttttgtgtaagatgtaagatctgtgtctagattcatt-------ttttt--------catgtggacgtccagttgtcccagcaccatttttggaaaagccagttctttctccattgcatttcctttattcgtctgtcacagatcaaactgactatatttgtgaggagcaatttcttgtctttctgctcggggccactgatctatttgtccgttctttctctaggaccacacagtcacccagtc-tttttacagtagctttcgagtagctct--caaggtgggtagtctcagccctccagatttgctc-----tcttta-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3366935 384 - 10304083 ccaggtcacctagattttcatctgtgttctgttctaaaagttttatagtttttgcacttcacatgtaggtctgttattg-----gagttaatttttgtgtaagatgtaagatctgtgtctagattcatt-------ttttt--------catgtggacgtccagttgtcccagcaccatttttggaaaagcctgttctttctccattgcatttcctttattcctctgtcacagatcaaactgactatatttgtgaggagcaatttcttgtctttctgctcggggccactgatctatttgtccgttctttctctaggaccacacagtcacccagtc-tttttacagtagctttcgagtagctct--taaggtgggtagtctcagccctccagatttgctc-----tctttaat i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3449859 383 - 107702431 ccaggtcacctagattttcatctgtgttctgttctaaaagttttacagtttttgcactttacatgtaggtctgttattg-----gagttaatttttgtgtaaaatataagatctgtgtctagattcatt-------ttttt--------catgtggacgtccagttgtcccagcaccatttttggaaaaacctgttctttctccattgcatttcctttattcctctgtcagagatcaaactgactatatttgtgaggagcaatttcttgtctttctgctctgggccactgatc-atttgtccgttctttctcgaggaccacacagtcacccagtc-tttttacagcagctttcgagtagctct--taaggtgggtagtctcagccctccagatttgctc-----tctttaat i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 999538 384 + 1565135 ccaggtcacctagattttcatctgtgttctgttctaaaagttttacagtttttgcactttacatgtaggtctgttattg-----gagttaatttttgtgtaagatgtaagatctgtgtctagattcatt-------ttttt--------catgtggacgtccagttgtcccagcaccatttttggaaaaacctgttctttctccattacatttcctttattcctctgtcacagatcaaactgactatatttgtgaggagcaatttcttgtctttctgctcggggccactgatctatttgtccattctttctcgaggaccacacagtcacccagtc-tttttacagtagctttcgagtagctct--taaggtgggtagtctcagccctccagatttgctc-----tctttaat i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3452298 391 - 108792865 ccaggtcacctagattttcgtc--tgttctattctggaagttttagggtttttgcacttcacatgtcggactgtttctgatctcaaggtaacttttgtgtaagatgtaaggtctgggtctagattcatt-------ttttctt------catcgggacgtttagttgtcccagcctcatttttggaaaaacctgtcctttctccactgaattacctttactcccttgtcagagatcagggtgactgtatttgtgaggacccatgtctcgtttgtctgctctgggccgttgatctgtttgcccattcctctgccaggaccacgacatcacccagtctttttcataatagctctgcagtggctct-gtagggtggatggtgtcagccctccacatttgttc-----tctttaat i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3101779 399 - 7082604 ccaggtcacctagattttcgtctgtgttctattctggaagttttatggcttttgcacttcacatgtgggactgtttctgatctgaagttaactgttgtgtaagatgtaagatctgtgtctagattcattattattattttttg------ggggggggcatccagttgtctcagcatcatttttggaaaaacctgtcctttctccactgaatgacctttactcctttgtcaaagatcaaggtgactgtgtttgtgaggacccatctctcgtctttctgctctgggcca-tgatctgtttgcccattcttctgccaggaccacacagtcacccagtctttttcatgatagctctgcagtggctct-gtaaggtgggcggtgtcagccctccagatttgttc-----tctttaat i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 564777 394 + 2232271 ccaggtcaccttgattttcttctgtgttatcttacagacattttatgg-ttttacattttacatttagatctatgatccattttgagttcaattttttggaagctgtaaggtctgtgtctagattcatt-------attttttttaattgatgtggatgtccacttgtaccagcataatttgttgaaaagactatcctttctcttttgagttcccttggctcccttgtcagtgatca-gttgactaaatttgcatgggtttatttctgggttctctatactgttccagtaattggttagtctgttctttc------accacac---cactctgtcttgattactgtagctttatagtaagtctcaaaagttagggaatgtcagtcctccaactttgttctttggtcttcagt i dasNov3.JH580157 I 4425 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e nomLeu3.chr19 3042566 510 + 81552678 M a score=1665264.000000 s hg38.chr2_KI270769v1_alt 49658 242 + 120616 attgtgttggatgttctgggtgttttccttctccatattaacttcagaatcattttgttgataaccacaaaataatttgctgagattttg----attggggctgcatcgaatctgtaggtcaagttgtaaagaactgatattttagcagtattgt--cttcctgtccatgaatgtggaatatctcttga-tttcttcag---ctctgtgaattttttcatcagagttttatagttttcttcctatagctctt s panTro5.chr2A 3510244 242 + 111504155 attgtgttggatgttctgggtgttttccttctccatattaacttcagaatcattttgttgataaccacaaaataatttgctgagattttg----attggggctgcatcgaatctgtaggtcaagttgtaaagaactgatattttagcagtattgt--cttcctgtccatgaatgtggaatatctcttga-tttcttcag---ctctgtgaattttttcatcagagttttatagttttcttcctatagctctt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3371197 242 + 114371477 attgtgttggatgttctgggtgttttccttctccatattaacttcagaatcattttgttgataaccacaaaataatttgctgagattttg----attggggctgcatcgaatctgtaggtcaagttgtaaagaactgatattttagcagtattgt--cttcctgtccatgaatgtggaatatctcttga-tttcttcag---ctctgtgaattttttcatcagagttttatagttttcttcctatagctctt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 248606 242 + 637652 attgtgttggatgttctgggtgttttccttctccatattaacttcagaatcattttgttgataaccacaaaataatttgccgagattttg----attggggctgcatcgaatctgtaggtcaagttgtaaagaactgatattttagcagtattgt--cttcctgtccatgaatgtggaatatctcttga-tttcttcag---ctctgtgaatgttttcatcagagttttatagttttcttcctatagctctt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3043076 242 + 81552678 attgtgttgcatattctgggtgttttccttctccatagtaacttcagaatccttttgttgataaccacaaaataatttgctgagattttg----attggggctgcatcgaatctgtaggtcaagttgtaaagaactgatattttagcagtattgt--cttcctgtccatgaatgtggagtatctcttga-tttcttcag---ctctgtgaattttttcatcagagttttatagttcttttcccataactctt i nomLeu3.chr19 M 510 C 0 s rheMac8.chr13 3305834 240 + 108979918 ---gtgttggatattctgagtgttttccttctccatattaacttcagagtcatttcgttgataaccatgaaataatttgctgggattttg----attggggctgcatcgaatctgtaggtcaagttgtaaagaactgttgttttagcagtattgt--cttcctgtccatgaatgtgtaatatctcttgatttttttcag---ctctgtgaattttttcatcagagttttgtagttttcttcctacagctctt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5018709 240 - 111193037 ---gtgttggatattctgagtgttttccttctccatattaacttcagagtcatttcgttgataaccatgaaataatttgctgggattttg----attggggctgcatcgaatctgtaggtcaagttgtaaagaactgttgttttagcagtattgt--cttcctgtccatgaatgtgtaatatctcttgatttttttcag---ctctgtgaattttttcatcagagttttgtagttttcttcctacagctctt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3412009 240 + 3644372 ---gtgttggatattctgagtgttttccttctccatattaacttcagagtcatttcgttggtaaccatgaaataatttgctgggattttg----attggggctgcatcgaatctgtaggtcaagttgtaaagaactgttgttttagcagtattgt--cttcctgtccatgaatgtgtaatatctcttgatttttttcag---ctctgtgaattttttcatcagagttttatagttttcttcctacagctctt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3367319 242 - 10304083 gttatgttggatattctgagtgttttccttctccatattaacttcagagtcatttcgttgataaccatgaaataatttgctgggattttg----attggggctgcatcgaatctgtaggtcaagttgtaaagaactgttgttttagcagtgttgt--cttcctgtccatgaatgtggaatatctcttga-ttttttcag---ctctgtgagttttttcatcagagttttgtagttttcttcctacagctctt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3450242 243 - 107702431 gttgtgttgcatattctgagtgttttccttctccatattaacttcaaagtcatttcgttgataaccatgaaataatttgctgggattgtg----attggggctgcatcgaatctgtaggtcaagttgtaaagaactgttgttttagcagtattgt--cttcctgtccatgaatgtggaatatctcttgatttttttcag---ctctgtgaattttttcatcagagttttgtagttttcttcctacagctctt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 999922 243 + 1565135 gttatgttggatattctgagtgttttccttctccatattaacttcagagtcatttcgttgataaccatgaaataatttgctgggattttg----attggggctgcatcgaatctgtaggtcaagttgtaaagaactgttgttttagcagtgttgt--cttcctgtccatgaatgtggaatatctcttgatttttttcag---ttctgtgaattttttcatcagagttttgtagttttcttcctacagctctt i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3452689 242 - 108792865 atagcgttggatattctgggtgttttccttctccatattaactttagaatcattttgttgagaaccacaaaataatgtgctggagttttttttcattggggctgcatcgaatctgtaggtgaagttgtaaagaactggtattttagcagtattgt--cttcctggccgtgaatgtgga--atctctcaa-tttattcaa---gtctgtgaattctttcatc--agttttatagttttcttcctacagctttt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3102178 239 - 7082604 accatgttggatattgtgggtgttttccccctccatattaactttagaatcattttgttgataaccacaaaataatttgccggaatttttttt-attggggctgcatcgaatctgtaggtcaggttgtaaa-aactgatattttagcagtatcgt--cttcctgtttgtgaatgtgga--atctctcaa-tttattcta---gtctgtgaattctttcatc--agttttatag-tttctttctacagctttt i saiBol1.JH378218 C 0 I 582 s dasNov3.JH580157 565171 247 + 2232271 gttgtgttggatattttgggtcttttggccttttacctaaactttagaaacaatttgttgctatccacaaaataacttgctgggattttg----attgagattgggttgaatctataggtcaagttgggaaggactgatatcttaacagtattgttacttcctatccatgaacatggaatatctctcca-tttatttagatcttctttgacttccttcatcatagttttgtatttttccacaaatagactat i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=1129074.000000 s hg38.chr2_KI270769v1_alt 49900 200 + 120616 gtgcatattttgtccatttt--atacgt-gggtatttcacttattta----tgt-agaaatgatagtgtgtttttaatttcaaattcccatcatttattgctagtatctaggaagccagttgacttttgcatattgatcttgtatcctgtgacttt----taatcacttcctagtt-tagaagtgttttt--gttctttgagattgttctttata s panTro5.chr2A 3510486 200 + 111504155 gtgcatattttgtccatttc--atacct-gggtatttcacttattta----tgt-agaaatgatagtgtgtttttaatttcaaattcccatcatttattgctagtatctaggaagccagttgacttttgcatattgatcttgtatcctgtgacctt----taatcacttcctagtt-tagaagtgttttt--gttctttgagattgttctttata i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3371439 200 + 114371477 gtgcatattttgtccatttt--atacct-gggtatttcacttattta----tgt-agaaatgatagtgtgtttttaatttcaaattcccatcatttattgctagtatctaggaagccagttgacttttgcatattgatcttgtatcctgtgacctt----taatcacttcctagtt-tagaagtgttttt--gttctttgagattgttctttata i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 248848 200 + 637652 gtgcatattttgtccatttt--atacct-gggtatttcacttattta----tat-agaaatgatagtgtgtttttaatttcaaattcccatcatttattgctagtatctaggaagccagttgacttttgcatattgatcttgtatcctgtgacctt----taatcacttcctagtt-tagaagtgttttt--gttctttgagattgttctttata i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3043318 200 + 81552678 gtgcatattttgtccatttt--atacct-gggtatttcacttactta----tat-ggaaatgatagtgtgttttttatttcaaattcccatcatttattgctagtatctaggaagccagttgacttttgcatattgatcttgtattctgtgacctt----taatcacttcctactt-tagaagttttttt--gttctttgagatttttctttata i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3306074 202 + 108979918 gtgcttattttgtccatttt--atacctagggtatttcacttattta----tatgggaaatgatagtgtgtttttaatttcaaattcccatcttttattggtagtatctaggaagacagttgacttttgcatattgatctcgtatcctgtgacctt----taaacacttactagtt-tagaagttttttt--gttctttgagatttttcttcata i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5018949 202 - 111193037 gtgcttattttgtccatttt--atacctagggtatttcacttattta----tatgggaaatgatagtgtgtttttaatttcaaattcccatcttttattggtagtatctaggaagacagttgacttttgcatattgatctcgtatcctgtgacctt----taaacacttactagtt-tagaagttttttt--gttctttgagatttttcttcata i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3412249 202 + 3644372 gtgcttattttgtccatttt--atacctagggtatttcacttattta----tatgggaaatgatagtgtgtttttaatttcaaattcccatcttttattggtagtatctaggaagacagttgacttttgcatattgatctcgtatcctgtgacctt----taaacacttactagtt-tagaagttttttt--gttctttgagatttttcttcata i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3367561 202 - 10304083 gtgcttattttgtccatttt--atacctagggtatttcacttattta----tgtgggaaatgatagtgtgtttttaatttcaaattcccatcttttattggtagtatctaggaagccagttgacttttgcatattgatctcgtatcctgtgacctt----taaacacttactagtt-tagaagttttttt--gttctttgagatttttcttcata i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3450485 202 - 107702431 gtgcttattttgtccatttt--ataccgagggtatttcacttattta----tatgggaaatgatagtgtggttttaatttcaaattcccaacatttattggtagtatctaggaagccagttgacttttgcatattgatctcgtatcctgtgacctt----taaacacttactggtt-tagaagttttttt--gttctttgagatttttcttcata i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1000165 202 + 1565135 gtgcttattttgtccatttt--atacctagggtatttcacttattta----tatgggaaatgatagtgtgtttttaatttcaaattcccatcttttattggtagtatctaggaagccagttgacttttgcatattgatctcgtatcctgtgacttt----taaactcttactagtt-tagaagttttttt--gttctttgagatttttcttcata i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3452931 194 - 108792865 atgcatattttgtccagttt--atacct-ggatatttcatttattta----tat-ggaaatgatactgtgtttttaatttcaaattcccgtcattta----tagtatctaggaagccagttgacatttgcgtattaatcttgtatcctgtgaccct----caatcacttactagtt-taaag--tctttt--gttctttgagatttttcttcata i calJac3.chr14 C 0 C 0 s dasNov3.JH580157 565418 208 + 2232271 ----atatttt-tgtattagaaatacct-aagtatttcatatttttaatgttattataaatgatattgtgctttaaattacaaattacagttattcattgctgttatataggaaagcagttcacatttatatgttaactttatatcctacaaatctgttataattgcttattaattccagaagtttttgtcaattcattcagagt-ttctgaata i dasNov3.JH580157 C 0 I 111 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3102417 582 - 7082604 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=466135.000000 s hg38.chr2_KI270769v1_alt 50100 80 + 120616 attatgtcattgcaaacaagtagttttatttccttcttcccagtctgtgtacctttgg-----ttttcttgtc--attgcattagct s panTro5.chr2A 3510686 80 + 111504155 attatgtcattgccaacaagtagttttatttccttcttcccagtctgtgtacctttgg-----ttttcttgtc--attgcattagct i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3371639 80 + 114371477 attatgtcattgccaacaagtagttttatttccttcttcccagtctgtgtacctttgg-----ttttgttgtc--attgcattagct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 249048 80 + 637652 attatgtcattgcaaacaagtagttttatttccttcttcccagtctgtgtacctttgg-----ttttcttgtc--attgcattagct i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3043518 80 + 81552678 attatgtcattgcaaacaaatagttttattcccttcttcccagtctgtgtacctttgg-----ttttcttgtc--attgcattagct i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3306276 85 + 108979918 attatgtcattttaagcaaatagttttatttccttcttcccactctgtgtacctttggttttcttttcttgtc--attacattagct i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5019151 85 - 111193037 attatgtcattttaagcaaatagttttatttccttcttcccactctgtgtacctttggttttcttttcttgtc--attacattagct i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3412451 85 + 3644372 attatgtcattttaagcaaatagttttatttccttcttcccactctgtgtacctttggttttcttttcttgtc--attacattagct i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3367763 85 - 10304083 attatgtcattgcaagcaaatagttttatttccttcttcccactctgtgtacctttggttttcttttcttgtc--attgcattagct i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3450687 85 - 107702431 attatgtcattgcaagcaaatagttttatttccttcttcccactctgtgtacctttggttttcttttcttgtc--attgcattagct i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1000367 85 + 1565135 attatgtcattgcaagcaaatagttttatttccttcttcccactctgtgtacctttggttttcttttcttgtc--attgcattagct i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3453125 82 - 108792865 attatgtcattgcaaacaagtggttttacttccttccgctcaggctgtg--cctttggtttg-ttcccttgtc--attgcattcgct i calJac3.chr14 C 0 C 0 s dasNov3.JH580157 565737 86 + 2232271 agcatgtcatttgcaa-agacagttttatttcctccttctgaatctgtaagcctttcatttccttttcttgtcttattgcattagct i dasNov3.JH580157 I 111 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3102417 582 - 7082604 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=1763746.000000 s hg38.chr2_KI270769v1_alt 50180 341 + 120616 cgaacttccagtacaatgttcagtagaagagataagagggaacattgttgctttattcatgatcttagggggaagtcactgagtttctcactcttaagtttgttgttagctgcag-ttgttttgtagatgtcctttattaagttgaggaagtttccctctattcctagttggctgagagttttta-tcacgagctggtgctggattttgttaaatgcttttctacatctattgatatgatttttgttctttagcctgtttgatgtggtagattatgttaattgattttggaatgttagatcacccctgcatacc-----tggaataaattctgtctggtcatggttca s panTro5.chr2A 3510766 341 + 111504155 cgaacttccagtacaatgttcagtagaagagataagagggaacattgttgctttattcatgatcttagggggaagtcactgagtttctcactcttaagtatgttgttagctgcag-ttgttttgtagatgtcctttattaagttgaggaagtttccctctattcctagttggctgagagttttta-tcacgagctggtgctggattttgttaaatgcttttctacatctattgatatgatttttgttctttagcctgtttgatgtggtagattatgttaattgattttggaatgttagatcacccctgcatacc-----tggaataaattctgtctggtcatggttca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3371719 341 + 114371477 cgaacttccagtacaatgttcagtagaagagataagagggaacattgttgctttattcatgatcttagggggaagtcactgagtttctcactcttaagtatgttgttagctgcag-ttgttttgtagatgtcctttattaagttgaggaagtttccctctattcctagttggctgagagttttta-tcacgagctggtgctggattttgttaaatgcttttctacatctattgatatgatttttgttctttagcctgtttgatgtggtagattatgttaattgattttggaatgttagatcacccctgcatacc-----tggaataaattctgtctggtcatggttca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 249128 341 + 637652 cgaacttccagtacaatgttcaggagaagagataagagggaacattgttgctttattcatgatcttagggggaagtcactgagtttctcactcttaagtatgttgttagctgcag-ttgttttgtagatgtcctttattaagctgaggaagtttccctctattcctagttggctgagagttttta-tcacgagctggtgctggattttgttaaatgcttttctacatctattgatatgatttttgttctttagcctgtttgatatggtagattatgttaattgattttggaatgttagatcacccttgcatacc-----tggaataaattctgtctggtcatggttca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3043598 341 + 81552678 ccaacttccagtacaatgttcagtagaagagatgagagggaacattgttgctttattcatgatcttagggggaaatcactgagtttctcactcttaagtatgttgttagctgcag-ttgttttgtagatgtcccttattaagttgaggaagtttccctttattcctggttggctgagagttttta-tcatgagctggtgctggattttgttaaatgcttttctacatttattgatatgatttttgttctttagcctgtttgatgtggtagattatgttaattgattttggaatgttagatcacccttgcatacc-----tggaataaattctatctggtcatggttta i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3306361 340 + 108979918 cgaacttccagtacaatgttcagtggaagagatgagagggaacattgttgctttattcatgatcttagggggaaatcactgagtttctcactcttaagtatgttgttagctgcag-ttgttttat-gatgtcctttatcaagttgaggaagtttccctctattcctagtttgctgagagttttta-tcatgagccggtgctggattttgttaaatgcttttctacatctatggataagatttttgttctttagcctgtttgatgtagtagattatgttaactgattttggaatgttagatcacccttgcatacc-----tggaataaattctgtctggtcatggttta i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5019236 340 - 111193037 cgaacttccagtacaatgttcagtggaagagatgagagggaacattgttgctttattcatgatcttagggggaaatcactgagtttctcactcttaagtatgttgttagctgcag-ttgttttat-gatgtcctttatcaagttgaggaagtttccctctattcctagtttgctgagagttttta-tcatgagccggtgctggattttgttaaatgcttttctacatctatggataagatttttgttctttagcctgtttgatgtagtagattatgttaactgattttggaatgttagatcacccttgcatacc-----tggaataaattctgtctggtcatggttta i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3412536 338 + 3644372 cgaacttccagtacaatgttcagtggaagagatgagagggaacattgttgctttattcatgatcttagggggaaatcactgagtttctcactcttaagtatgttgttagctgcag-ttgttttat-gatgtcctttatcaagttgaggaagtttccctctattcctagtttgct--gagttttta-tcatgagctggtgctggattttgttaaatgcttttctacatctatggataagatttttgttctttagcctgtttgatgtagtagattatgttaactgattttggaatgttagatcacccttgtatacc-----tggaataaattctgtctggtcatggttta i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3367848 340 - 10304083 cgaacttccagtacaatgttcagtggaagagacgagagggaacattgttgctttattcatgatcttagggggaaatcactgagtttcttactcttaagtatgttgttagctgcag-ttgttttat-aatgtcctttattaagttgaagaagtttccctctattccttgtttgctgagagttttta-tcatgagctggtgctggattttgttaaatgcttttctacatctatggataagatttttgttctttagcctgtttgatgtagtagattatgttaactgattttggaatgttagatcacccttgcatacc-----tggaataaattctatctggtcatggttta i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3450772 340 - 107702431 cgaacttccagtacaatgttcagtggaagagatgagagggaacattgttgctttattcatgatcttagggggaaatcactgagtttctcagtcttaagtatgttgttagctgcag-ttgttttat-aatgtcctttattaagttgaggaagtttccctctattcctagtttgctgagagttttta-tcatgagctggtgctggattttgttaaatgcttttctacatctatggataagatttttgttctttagcctgtttgatgtagtagattatgttaactgattttggaatgttagatcacccttgcatacc-----tggaataaattctgtctggtcatggttta i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1000452 340 + 1565135 cgaacttccagtacaatgttcagtggaagagatgagagggaacattgttgctttattcatgatcttagggggaaatcactgagtttctcactcttaagtatgttgttagctgcag-ttgttttat-aatgtcctttattaagttgaagaagtttccctctattccttgtttgctgagagttttta-tcatgagctggtgctggattttgttaaatgcttttctacatctatggataagatttttgttctttagcctgtttgatgtagtagattatgttaactgattttggaatgttagatcacccttgcatacc-----tggaataaattctgtctggtcatggttta i manLeu1.NW_012104432v1 C 0 C 0 s dasNov3.JH580157 565823 308 + 2232271 cagacttccagt---atgttgaataggagtggtgagaagagacagccttgccttgattccaattttcggtggaaagcgtcaagtttctca---ttaagtgtgacattagctatagatttttttgtggatattctttatcaaattgaggtagttcctttctattccttgtttgctgagaggttttagtcatcagtgagtgttggattttgtgaagtatatttctacacctattgatatgat---------------------------catataatttttatatat-------tgttggattgtctttgctaacattttgttgaagattttttgttttgttttggtttg i dasNov3.JH580157 C 0 I 93 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3102417 582 - 7082604 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e calJac3.chr14 3453207 0 - 108792865 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=374876.000000 s hg38.chr2_KI270769v1_alt 50521 76 + 120616 taattctttttatacattgttggatttggttgctaattttttgttgacttcagttttcttagatttagtttgctaa s panTro5.chr2A 3511107 76 + 111504155 taattctttttatacattgttggatttggttgctaattttttgttgacttcagttttcttagatttagtttgctaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3372060 76 + 114371477 taattctttttatacattgttggatttggttgctaattttttgttgacttcagttttcttagatttggtttgctaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 249469 76 + 637652 taattctttttatacattgttggatttggttgctaattttttgttgacttcagttttcttagatttagtttgctaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3043939 76 + 81552678 taattctttttatacattgttggatttggttgctaattttttgttgacttcagttctcttagattcagtttgctaa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3306701 76 + 108979918 taattctttttatacattgttggatttggttgctaattttttgttgacttcagttctcttcgattcagtttgctaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5019576 76 - 111193037 taattctttttatacattgttggatttggttgctaattttttgttgacttcagttctcttcgattcagtttgctaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3412874 76 + 3644372 taattctttttatacattgttggatttggttgctaattttttgttgacttcagttctcttcgattcagtttgctaa i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3368188 76 - 10304083 taattctttttatacattgttggatttggttgctaattttttgttgacttcagttctcttcgattcagtttgctaa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3451112 76 - 107702431 taattctttttatacattgttggatttggttgctaattttttgttgacttcagttctcttcggttcagtttgctaa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1000792 76 + 1565135 taattctttttatacattgttggatttggttgctaattttttgttgacttcagttctcttcgattcagtttgctaa i manLeu1.NW_012104432v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3102417 582 - 7082604 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 566131 93 + 2232271 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e calJac3.chr14 3453207 0 - 108792865 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=2892432.000000 s hg38.chr2_KI270769v1_alt 50597 672 + 120616 ttttgttgaagatttttgcatttatgttcatgagacatattggtc--tacag-tttttttttcttgtaacgtctttgtctggttttggtattagggtaatgccagactcatataagaagttagaaagcgttcctctgcttctgttttctgaaagagattgtagagaactggtagcatttcttccataaatgttaggtggaattca-cagtgagaccatctgggtctggggcttgc-tttttggaaag-------------------------------------------------------gtttttcttt------------------------------------------ttctatccaagttaccaaatgtatggacatagagctgttcataatattcctttactattcttttactgttcataggatccatagtaatagtccttcacttctagtactagttgtttatgtcttctct---gttttttgactagcctggggagagacttattggtcttgtcagagttttattggtcttgtcaaagaatatgtttttggtttggttgattttgtctattgatttcctgttttcagtttcactgatttctgctctaattttta-ttattatatttttattattttcttattataatacaataatat-------------------------------ttttattattttcttat---aataaaatattttattttcttat-----------------------------aataaaataatatttttattattttcttctctactgcttactttaggcttatattgctctttctttccttc s panTro5.chr2A 3511183 677 + 111504155 tttttttgaagatttttgcatttatgttcatgagacatattggtc--tacag-tttttttttcttgtaacgtctttgtctggttttggtattagggtaatgccagactcatataagaagttagaaagcgttcctctgcttctgttttctgaaagagattgtagagaactggtagcatttcttccataaatgttaggtggaattca-cagtgagaccatctgggtctggggcttgc-tttttggaaag-------------------------------------------------------gtttttcttt------------------------------------------ttctatccaagttaccaaatgtatggacatagagctgttcataatattcctttactattcttttactgttcataggatccatagtaatagtccttcacttctagtactagttgtttatgtctcctct---gttttttgactagcctggggagagacttactggtcttgtcagagttttattggtcttgtcaaagaatatgtttttggtttggttgattttgtctattgatttcctgttttcagtttcactgatttctgctctaattttta-ttattatatttttattattttcttat-ataatacaataatat-------------------------------ttttattattttcttattataataaaatattttattttcttat--------------------------tataataaaataatatttttattattttcttctctactgcttactttaggcttatatcgctctttctttccttc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3372136 677 + 114371477 ttttgttgaagatttttgcatttatgttcatgagacatattggtc--tacag-tttttttttcttgtaacgtctttgtctggttttggtattagggtaatgccagactcatataagaagttagaaagcgttcctctgcttctgttttctgaaagagattgtagagaactggtagcatttcttccataaatgttaggtggaattca-cagtgagaccatctgggtctggggcttgc-tttttggaaag-------------------------------------------------------gtttttcttt------------------------------------------ttctatccaagttaccaaatgtatggacacagagctgttcataatattcctttactattcttttactgttcataggatccatagtaatagtccttcacttctagtactagttgtttatgtctcctct---gttttttgactagcctggggagagacttattggtcttgtcagagttttattggtcttgtcaaagaatatgtttttggtttggttgattttgtctatcgatttcctgttttcagtttcactgatttctgctctaattttta-ttattatatttttattattttcttat-ataatacaataatat-------------------------------ttttattattttcttattataataaaatattttattttcttat--------------------------tataataaaataatatttttattattttcttctctactgcttactttaggcttatatcgctctttctttccttc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 249545 731 + 637652 ttttgttgaagatttttgcatttatgttcatgagacatattggtc--tacag-tttttttttcttgtaacgtctttgtctggttttggtattagggtaatgccagactcatataagaagttagaaagcgttcctctgcttctgttttctgaaagagattgtagagaactggtagcatttcttccataaatgttaggtggaattca-cagtgaaaccatctgggtctggggcttgc-tttttggaaag-------------------------------------------------------g-ttttcttt------------------------------------------ttctatccaagttaccaaatgtatggacatagagctgttcataatattcctttactatccttttactgtccataggatccatagtgatagtccttcacttctagtactagttgtttatgtcttctct---gttttttgactagcctggggagagacttattggtcttgtcagagttttattggtcttgtcaaagaatatgtttttggtttggttgattttgtctattgatttcctgttttcagtttcactgatttctgctctaattttta-ttattatatttttattattttcttattataataaaataatattttattattttcttattataataaaataatattttattattttcttattataataaaatattttattttcttattataataaaatattttattattttcttataataaaataatatttttattattttctt---tactgcttactttaggcttatattgctctttctttccttc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3044015 598 + 81552678 ttttgttgaagatttttgcatttatgttcatgacacatattggtc--tatag-tttttttttcttgtaacatctttgtctggttttggtattagggtaatgccagactcatataagaagttagaaa---------------tgttttctggaagagattgtagagaactggtagcatttcttccataaatgtttggtggaattca-cagtgaaaccatctgggtctggggcttgc-tttttggaacg-------------------------------------------------------atttttcttt------------------------------------------ttctatctaagttaccaaatgtatggacatagagctgttcataatattcctttacttttcttttactgtccataggatccatagtaataatccttcacttctagtactagttgtttatgtcttctct---tttttttgactagcgtggggagaggcttattggtcttgtcagagttttattggtcttgtcaaagaatatgtttttggtttggttgattttgtctattgatttcctcttttcagtttcactgatttctgctctaattttta-ttattatattttta-----------------------------------------------------------ttttgtta---------------------------------at------------------------------ataaaataatatttttattattttcttctccactgcttactttaggcttatattgctctttctttccttc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3306777 591 + 108979918 ttttgttgaagatttttgcatttatgttcatgagacatattggtc--tatat--tcttttttcttgtaacatctttgtctggttttggtattagggtaatgccagcctcatataagaagttagaaagtattcctctgcttctgttttcgggaagagattgtggagaactgatatcatttcttccataaatgtttagtggaattca-cagtgaaaccatctgggtctggggcttgcttttttggaaag-------------------------------------------------------gtttttcttt------------------------------------------ttctatctaagttaccaaatgtgtggacatagagctgttcgtaatattcctttattattcttttactgtccgtaggatccacagtaataatccttcacttctagtactagttgtttatgtcttgtct----ttttttgactagcctggggagaggcttattggtcttgtcagagttttattggtcttgtcaaagaatatgtttttggtttggttgattttgtctattgatttcctgttttcagtttcactgatttctgctctaattttta-ttattatattttta-----------------------------------------------------------------------------------------------------------------------------------------------ttattattattttattctctactgcttactttaggcttatattgctctttctttccttc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5019652 591 - 111193037 ttttgttgaagatttttgcatttatgttcatgagacatattggtc--tatat--tcttttttcttgtaacatcgttgtctggttttggtattagggtaatgccagcctcatataagaagttagaaagtattcctctgcttctgttttcgggaagagattgtggagaactgatatcatttcttccataaatgtttggtggaattca-cagtgaaaccatctgggtctggggcttgcttttttggaaag-------------------------------------------------------gtttttCTTt------------------------------------------ttctatctaagttaccaaatgtgtggacatagagctgttcgtaatattcctttattattcttttactgtccgtaggatccacagtaataatccttcacttctagtactagttgtttatgtcttgtct----ttttttgactagcctggggagaggcttattggtcttgtcagagttttattggtcttgtcaaagaatatgtttttggtttggttgattttgtctattgatttcctgttttcagtttcactgatttctgctctaattttta-ttattatattttta-----------------------------------------------------------------------------------------------------------------------------------------------ttattattattttattctctactgcttactttaggcttatattgctctttctttccttc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3412950 591 + 3644372 ttttgttgaagatttttgcatttatgttcatgagacatattggtc--tatat--tcttttttcttgtaacatctttgtctggttttggtattagggtaatgccagcctcatataagaagttagaaagtattcctctgcttctgttttcgggaagatattgtggagaactgatatcatttcttccataaatgtttggtggaattca-cagtgaaaccatctgggtctggggcttgcttttttggaaag-------------------------------------------------------gtttttcttt------------------------------------------ttctatctaagttaccaaatgtgtggacatagagctgttcgtaatattcctttattattcttttactgtccgtaggatccacagtaataatccttcacttccagtactagttgtttatgtcttgtct----ttttttgactagcctggggagaggcttattggtcttgtcagagttttattggtcttgtcaaagaatatgtttttggtttggttgattttgtctattgatttcctgttttcagtttcactgatttctgctctaattttta-ttattatattttta-----------------------------------------------------------------------------------------------------------------------------------------------ttattattattttattctctactgcttactttaggcttatattgctctttttttccttc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3368264 593 - 10304083 ttttgttgaagatttttgcatttatgttcatgagacatattggtctatatat--ttttttttcttgtaacgtctttgtctggttttggtattagggtaatgccagcctcatataagaagttagaaagtattcctctgcttctgttttcgggaagagattgtggagaactgatatcatttcttccataaatgtttggtggaattca-cagtgaaaccatctgggtctggggcttgcttttttggaaag-------------------------------------------------------gtttttcttt------------------------------------------ttctatctaagttaccaaatgtgtggacatagagctgttcgtaatattcctttattattcttttactgtccgtagcatccacagtaataatccttcacttctagtactagttgtttatgtcttctct----ttttttgactagcctggggagaggcttattggtcttgtcagagttttattggtcttgtcaaagaatatgtttttggtttggttgattttgtctattgatttcctgtttgcagtgtcactgatttctgctctaattttta-ttattatattttta-----------------------------------------------------------------------------------------------------------------------------------------------tttttattattttattctctactgcttactttaggcttatattgctctttctttccttc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3451188 593 - 107702431 ttttgttgaagatttttgcatttatgttcatgagacatattggtc--tatat-tttttttttcttgtaacatctttgtctggttttggtattagggtaatgccagcctcatataaggagttagaaagtattcctttgcttctgttttcaggaggagattgtggagaactgatatcatttcttccataaatgtttggtggaattca-cagtgaaaccatctgggtctggggcttgcttttttggaaag-------------------------------------------------------gtttttCTTT------------------------------------------ttctatctaagttaccaaatgtgtggacatagagctgttcgtaatattcctttattattcttttactgtccgtagcatccacagtaataatccttcagttttagtactagttgtttatgtcttctct----ttttttgactagcctggggagaggcttattggtcttgtcagagttttattggtcttatcaaagaatatgtttttggtttggttgattttgtctgttgatttcctgttttcagtttcactgatttctgctctaatttttatttattatattttta-----------------------------------------------------------------------------------------------------------------------------------------------tttttattattttcttctctactgcttactttaggcttatattgctctttctttccttc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1000868 588 + 1565135 ttttgttgaagatttttgcatttatgttcatgagacatattggtc--tatat-attttttttcttgtaacgtctt----tggttttggtattagggtaatgccagcctcatataagaagttagaaagtattcctctgcttctgttttcgggaggagattgtggagaacttatatcatttcttccataaatgtttggtggaattca-cagtgaaaccatctgggtctggggcttgcttttttggaaag-------------------------------------------------------gtttttcttt------------------------------------------ttctatctaagttaccaaatgtgtggacatagagctgttcataatattcctttattattcttttactgtccgtaggatccacagtaataatccttcacttctagtactagttgtttatgtcttctct----ttttttgactggcctggggagaggcttattggtcttgtcagagttttattggtcttgtcaaagaatatgtttttggtttggttgattttgtctattgatttcctgttttcagtttcactgatttctgctctaattttta-ttattatattttta-----------------------------------------------------------------------------------------------------------------------------------------------tttttattattttattctctactgcttactttaggcttatattgctctttctttccttc i manLeu1.NW_012104432v1 C 0 C 0 s dasNov3.JH580157 566224 626 + 2232271 ctatgttaaggatttttgc----atgttcatgagagatattggtc--tgtagttttttctttcttataatgtcct---ctggttttagtattaggataatgctgacctcatagaatgagatagagag--------tgtttctgttttctggaagaaattgtagagaattggtatcttttcttccttaaatgtttggtggaattcatcagtgaaaccacctgggcctgcttctttcagttttggaaagttatcagttattgattcctttttttttaatagttctaggcctattcaggttatctgtttctccttgtgtgtgttttggtagattgtgtccttcacggaattagtccatttcatctaagttatctcatttgtaggcatagagttcttcataattttcttttactattcttttaatatccatggaggtggtggcact--tccttcatttctaatggtattaattt-tgtcttctctcttttttcttgattatcctgtcta-aggtttatc-----------aattattttgatcttttcaaagaaccaggttttgatt-------tttt---------tttcctgtttatggtttcattgatttctgctctaattttta-tta----------------------------------------------------------------------------------------------------------------------------------------------------------tttcttttattt----------tgcttgctttccgtttatattgct-tgtctctcttt- i dasNov3.JH580157 I 93 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2033920 3023 + 64289059 I e saiBol1.JH378218 3102417 582 - 7082604 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e calJac3.chr14 3453207 0 - 108792865 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=544582.000000 s hg38.chr2_KI270769v1_alt 51269 93 + 120616 tagttttcaaaggt-gaag---------ctggtttcaga----tctttcttttccaatatatgcatttaatgctaaaaagcttcctctcagcactgcttttgctgca s panTro5.chr2A 3511860 94 + 111504155 tagttttcaaaggtagaag---------ctggtttcaga----tctttcttttccaatatatgcatttaatgctaaaaagcttcctctcagcactgcttttgctgca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3372813 94 + 114371477 tagttttcaaaggtagaag---------ctggtttcaga----tctttcttttccaatatatgcatttaatgctaaaaagcttcctctcagcactgcttttgctgca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250276 94 + 637652 tagttttcaaaggtggaag---------ctggtttcaga----tctttcttttccaatatatgcatttaatgctaaaaagcttcctctcagcactgcttttgctgca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3044613 94 + 81552678 tagttttcaaaggtggaag---------ctggtttcaga----tctttcttttccaatatatgcatttaatgctaaaaagcttcctctcagcactgcttttgctgca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3307368 93 + 108979918 tagttttcaaaggtggaa----------ctggtttcaga----tctttcttttctagtatatgcatttaatgctaaaaagcttcctctcagcactgcttttgctgca i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5020243 93 - 111193037 tagttttcaaaggtggaa----------ctggtttcaga----tctttcttttctagtatatgcatttaatgctaaaaagcttcctctcagcactgcttttgctgca i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3413541 93 + 3644372 tagttttcaaaggtggaa----------ctggtttcaga----tctttcttttctagtatatgcatttaatgctaaaaagcttcctctcagcactgcttttgctgca i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3368857 94 - 10304083 tagttttcaaaggtggaag---------ctggtttcaga----tctttcttttctagtatatgcatttaatgctaaaaagcttcctctcagcactgcttttgctgca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3451781 94 - 107702431 tagttttcaaaggtggaag---------ctggtttcaga----tctttcttttctaatatatgcatttaatgctaaaaagcttcctctcagcactgcctttgctgca i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1001456 94 + 1565135 tagttttcaaaggtggaag---------ctggtttcaga----tctttcttttctagtatatgcatttaatgctaaaaagcttcctctcagcactgcttttgctgca i manLeu1.NW_012104432v1 C 0 C 0 s canFam3.chr17 2036943 95 + 64289059 tggttttccctgttga------------ttgattttaaaatcttctttcttttcaaatatattcatataatgctgtaaaattccctcttagcactgcttttgcagca i canFam3.chr17 I 3023 C 0 s dasNov3.JH580157 566850 100 + 2232271 ---tttcctgaggtaggagcttatgttatttatttttca----tcttttttttctaatatgatcattcactgctataaagttccttgttagcactgctgtcactgca i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e saiBol1.JH378218 3102417 582 - 7082604 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e otoGar3.GL873658 2530875 5314 + 5252280 I e cebCap1.NW_016107454v1 586528 2239 + 5243153 I e aotNan1.NW_018507213v1 1921238 1339 - 1938448 I e calJac3.chr14 3453207 0 - 108792865 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=10920.000000 s hg38.chr2_KI270769v1_alt 51362 1 + 120616 t s panTro5.chr2A 3511954 1 + 111504155 t i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3372907 1 + 114371477 t i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250370 1 + 637652 t i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3044707 1 + 81552678 t i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3307461 1 + 108979918 t i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5020336 1 - 111193037 t i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3413634 1 + 3644372 t i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3368951 1 - 10304083 t i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3451875 1 - 107702431 t i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1001550 1 + 1565135 t i manLeu1.NW_012104432v1 C 0 C 0 s saiBol1.JH378218 3102999 1 - 7082604 t i saiBol1.JH378218 I 582 C 0 s cebCap1.NW_016107454v1 588767 1 + 5243153 t i cebCap1.NW_016107454v1 I 2239 C 0 s aotNan1.NW_018507213v1 1922577 1 - 1938448 t i aotNan1.NW_018507213v1 I 1339 C 0 s canFam3.chr17 2037038 1 + 64289059 t i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 566950 1 + 2232271 t i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e otoGar3.GL873658 2530875 5314 + 5252280 I e calJac3.chr14 3453207 0 - 108792865 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=529164.000000 s hg38.chr2_KI270769v1_alt 51363 53 + 120616 cccacaaattttgataagttgtatttttattttcacttagttcaaaatatttt s panTro5.chr2A 3511955 53 + 111504155 cccacaaattttgataagttgtatttttattttcacttagttcaaaatatttt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3372908 53 + 114371477 cccacaaattttgataagttgtatttttattttcacttagttcaaaatatttt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250371 53 + 637652 cccacaaattttcataagttgtatttttattttcacttagttcaaaatatttt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3044708 53 + 81552678 cccacaaattttgataagttgtatttttattttcacttagttcaaaatatttt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3307462 51 + 108979918 cccacaaattttgat--gttgtatttttattttcactttgttcaaaatatttt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5020337 51 - 111193037 cccacaaattttgat--gttgtatttttattttcactttgttcaaaatatttt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3413635 51 + 3644372 cccacaaattttgat--gttgtatttttattttcactttgttcaaaatatttt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3368952 51 - 10304083 cccacaaattttgat--gttgtatttttattttcactttgttcaaaatatttt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3451876 51 - 107702431 cccacaaattttgat--gttgtatttttattttcacttcgttcaaaatatttt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1001551 51 + 1565135 cccacaaattttgat--gttgtatttttattttcactttgttcaaaatatttt i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3453207 53 - 108792865 cccacaaatctcggtaagttgtatttttattttcacttagttcaaaatgtttt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103000 53 - 7082604 cccacagattttgataagtcgtatttttatctttacttagttcagaatatttt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 588768 53 + 5243153 cccaccaatcttgataagtcgtatttttattttcacttagttcaaaatagttt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1922578 53 - 1938448 cccacaaatcttgataagttgtatttttattttcacttagttcaaaatatttt i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2037039 53 + 64289059 ctcacaaattttgataagttgtgttttcactctcatttagctccacgtgattt i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 566951 53 + 2232271 tctataaatttaggtaagttatattttcattttcagttagttcaaaatatctt i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e otoGar3.GL873658 2530875 5314 + 5252280 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=1535758.000000 s hg38.chr2_KI270769v1_alt 51416 174 + 120616 CACATGTGC-TTTTACATCCAGAAGCACCCCCATGTCCATGGGCAGTTGTCAGGATAAGGGGCAGCTAACTTTCTGCCACCTTCTCAGGTGAAGTG----GCAGGAGTCACACAGCCTGTTTTCTCACCATCCACCAAACTGTATTCCAGATCGGAGTATTAACAGCTAGTCTATAAAT s panTro5.chr2A 3512008 174 + 111504155 CACATGTGC-TTTTACATCCAGAAGCACCCCCATGTCCATGGGCAGTTGTCAGGATAAGGGGCAGCTAACTTTCTGCCACCTTCTCAGGTGAAGTG----GCAGGAGTCACACAGCCTGTTTTCTCACCATCCACCAAACTGTATTCCAGATCGGAGTATTAACAGCTAGTCTATAAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3372961 174 + 114371477 CACATGTGC-TTTTACATCCAGAAGCACCCCCATGTCCATGGGCAGTTGTCAGGATAAGGGGCAGCTAACTTTCTGCCACCTTCTCAGGTGAAGTG----GCAGGAGTCACACAGCCTGTTTTCTCACCATCCACCAAACTGTATTCCAGATCGGAGTATTAACAGCTAGTCTATAAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250424 174 + 637652 CACATGTGC-TTTTACATCCAGAAGCAACCCCATGTCCATGGGCAGTTGTCAGGATAAGGGGCAGCTAACTTTCTGCCACCTTCTCAGGTGAAGTG----GCAAGAGTCACACAGCCTGTTTTCTCACCATCCACCAAACTGTATTCCAGATCGGAGTATTAACAGCTAGTCTATAAAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3044761 174 + 81552678 CACATGTGC-TTTTACATCCAGAAGCACCCCCACGTCCATGGGCAGTTGTCAGGGTAAGGGGCAGCTAACTTTCCGCCATCTTCTCAGGTGAAGTG----GCTGGAGTCACATAGCCTGTTTTCTCACCATCCACCAAACTGTATTCCAGGTCGGAGTATTAACAGCTAGTCTGTAAAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3307513 174 + 108979918 CACATGTGC-TTTTACATCCAGAAGCACCCCCATGTCCATGGGCAGTTGTCAGGGTAAGGGGCAGCTAACTTTCTGCCACTGTCTCAGGTGAAGTG----GCAGGAGTCACACAGCCTGTTTTCTCACCATCTACCAAACTGTATTCCAGATCGGAGTATTAACAGCTAGTCTATAAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5020388 174 - 111193037 CACATGTGC-TTTTACATCCAGAAGCACCCCCATGTCCATGGGCAGTTGTCAGGGTAAGGGGCAGCTAACTTTCTGCCACTGTCTCAGGTGAAGTG----GCAGGAGTCACACAGCCTGTTTTCTCACCATCTACCAAACTGTATTCCAGATCGGAGTATTAACAGCTAGTCTATAAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3413686 174 + 3644372 CACATGTGC-TTTTACATCCAGAAGCACCCCCATGTCCATGGGCAGTTGTCAGGGTAAGGGGCAGCTAACTTTCTGCCACTGTCTCAGGTGAAGTG----GCAGGAGTCACACAGCCTGTTTTCTCACCATCTACCAAACTGTATTCCAGATCGGAGTATTAACAGCTAGTCTATAAAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3369003 174 - 10304083 CACATGTGC-TTTTACATCCAGAAGCACCCCCATGTCCATGGGCAGTTGTCAGGGTAAGGGGCAGCTAACTTTCTGCCACCGTCTCAGGTGAAGTG----GCAGGAATCACACAGCCTGTTTTCTCACCATCTACCAAACTGTATTCCAGATCGGAGTATTAACAGCTAGTCTATAAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3451927 174 - 107702431 CACATGTGC-TTTTACATCCAGAAGCACCCGCATGTCCATGGGCAGTTGTCAGGGTAAGGGGCAGCTAACTTTCTGCCACCTTCTCAGGTGAAGTG----GCAGGAGTCACACAGCCTGTTTTCTCACCATCTACCAAACTGTATTCCAGATCGGAGTATTAGCAGCTAGTCTATAAAT i chlSab2.chr14 C 0 I 6150 s manLeu1.NW_012104432v1 1001602 174 + 1565135 CACATGTGC-TTTTACATCCAGAAGCACCCCCATGTCCATGGGCAGTTGTCAGGGTAGGGGGCAGCTAACTTTCTGCCACCGTCTCAGGTGAAGTG----GCAGGAGTCACACAGCCTGTTTTCTCACCATCTACCAAACTGTATTCCAGATCGGAGTATTAACAGCTAGTCTATAAAT i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3453260 170 - 108792865 --catgtcc-tttTACATGCAGAAGCACCCCCATGTCCATGGGCAGTTGTCAGGGGAAGGGGCAGATAACTGTCTGCCACCTTT---GGTGAAGGGGCTCGCAGGAGTTTCACAGCCTGTTTCCTCCCCA--CTCCTAACTGTATTCCGGATGGGAGTGTTAACAGCTAGTCCATAAA- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103053 177 - 7082604 cacatgtcc-tttTACATGCAGAAGCACCCCCATGTCCATGGGTAGTTGTCAGGGGAAGGGGCAGATAATCTTCTGCCGCCTTCTCAGGTGAAGTGGCTCGCGGGAGTCCCACAGCCTGTTTTCTCCGCATCCTCCAAACTGTATTCCAGATGGGAGTATTAACAGCTAGTCTATAAA- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 588821 177 + 5243153 cacatgtcc-tttaacatGCAGAAGCATCCCCATGTCCATGGGCAGCTGTCAGGGAAAGGGGCAGTTAACTTTTGGCCGCCTTCTCAGGTGAGGTGGCTCGCAGGAGTTCCACAGCCTGTTTTCTCCCCATCCTCCAAGCTGTACTCCAGATGGGAGTATTAACAGCTAGTCTATAAA- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1922631 178 - 1938448 cacatgtcctttTTACATGCAGAAGCACCCCCATGTCCATGGGCTGTTGTCAGGGGAAGGGGCAGATAACTTTCTGCCACCTTCTGAGGTGAAGTGGCTCGCAGGAGTCCCACAGCCTGTTTTCTCCCCATCCTCCGAACTGTATTCCAGATGGGAGTATTAACAGCTAGTCTATAAA- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2536189 103 + 5252280 CACATGTAC-TTTTAAATACAGAAACTTCCCCGGGCCAGTGGGCAGCTGTCGGGGTAAAGTGCAGAGAACT-----------------------------GC-----------AGCCTTTTCATTTAT----------------------------------ATGGCTGGTTTATAAA- i otoGar3.GL873658 I 5314 C 0 s canFam3.chr17 2037092 108 + 64289059 tgcatgtcc-ttttaaatGTGGGAACTTCCTCTGGTGTGTAGACATTTGCCAGAATATGTAGCAAACTACTCCCTACCACCTCATCA-----------------------------------------------------TGTATC-----------------CAGTTCATTTATAAAT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 567004 107 + 2232271 CACATGCCT-TTTTGATCACAG-AGAGTTTTCAGGTCTATGGACAATTGCCAGGGCAAGGAGCAAATAACACCCTGCTACCTTTTCATATAGAGTG----------------------------------------------------------------------CTTATTTATAAAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=22401.000000 s hg38.chr2_KI270769v1_alt 51590 6 + 120616 TGAGAT s panTro5.chr2A 3512182 6 + 111504155 TGAGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373135 6 + 114371477 TGAGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250598 6 + 637652 TGAGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3044935 6 + 81552678 TGAGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3307687 6 + 108979918 TGAGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5020562 6 - 111193037 TGAGAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3413860 6 + 3644372 TGAGAT i macNem1.NW_012011978v1 C 0 I 289 s cerAty1.NW_012000820v1 3369177 6 - 10304083 TGAGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458251 6 - 107702431 TGAGAT i chlSab2.chr14 I 6150 C 0 s manLeu1.NW_012104432v1 1001776 6 + 1565135 TGAGAT i manLeu1.NW_012104432v1 C 0 C 0 s canFam3.chr17 2037200 2 + 64289059 TG---- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 567111 2 + 2232271 TA---- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e saiBol1.JH378218 3103230 0 - 7082604 C e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e otoGar3.GL873658 2536292 0 + 5252280 C e cebCap1.NW_016107454v1 588998 0 + 5243153 C e aotNan1.NW_018507213v1 1922809 0 - 1938448 C e calJac3.chr14 3453430 0 - 108792865 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=8633.000000 s hg38.chr2_KI270769v1_alt 51596 2 + 120616 CG s panTro5.chr2A 3512188 2 + 111504155 CG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373141 2 + 114371477 CG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250604 2 + 637652 CG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3044941 2 + 81552678 TG i nomLeu3.chr19 C 0 I 594 s rheMac8.chr13 3307693 2 + 108979918 CG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5020568 2 - 111193037 CG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3414155 2 + 3644372 CG i macNem1.NW_012011978v1 I 289 C 0 s cerAty1.NW_012000820v1 3369183 2 - 10304083 CG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458257 2 - 107702431 CG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1001782 2 + 1565135 TG i manLeu1.NW_012104432v1 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2037202 0 + 64289059 C e saiBol1.JH378218 3103230 0 - 7082604 C e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 567113 0 + 2232271 C e otoGar3.GL873658 2536292 0 + 5252280 C e cebCap1.NW_016107454v1 588998 0 + 5243153 C e aotNan1.NW_018507213v1 1922809 0 - 1938448 C e calJac3.chr14 3453430 0 - 108792865 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=159194.000000 s hg38.chr2_KI270769v1_alt 51598 35 + 120616 GAGTATTAACAGCTAGTCTGTACGTTGAGATCGGA s panTro5.chr2A 3512190 35 + 111504155 GAGTATTAACAGCTAGTCTGTACGTTGAGATCGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373143 35 + 114371477 GAGTATTAACAGCTAGTCTGTACGTTGAGATCGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250606 35 + 637652 GAGTATTAACAGCTAGTCTGTACGTTGAGATCGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045537 35 + 81552678 GAGTATTAACAGCTAGTCTGTAAACTGAGATTAGA i nomLeu3.chr19 I 594 C 0 s rheMac8.chr13 3307695 35 + 108979918 GAGTATTAACAGCCAGTCGGTAAATTGAGATCGGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5020570 35 - 111193037 GAGTATTAACAGCCAGTCGGTAAATTGAGATCGGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3414157 35 + 3644372 GAGTATTAACAGCCAGTCTGTAAATTGAGATCGGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3369185 35 - 10304083 GAGTATTAACAGCCAGCCTGTAAATTGAGATCAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458259 35 - 107702431 GAGTATTAACAGCTAGTCTGTAAATTGAGATCGGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1001784 35 + 1565135 GAGTATTAACAGCCAGTCTGTAAATTGAGATCGGA i manLeu1.NW_012104432v1 C 0 I 194 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2037202 0 + 64289059 C e saiBol1.JH378218 3103230 0 - 7082604 C e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 567113 0 + 2232271 C e otoGar3.GL873658 2536292 0 + 5252280 C e cebCap1.NW_016107454v1 588998 0 + 5243153 C e aotNan1.NW_018507213v1 1922809 0 - 1938448 C e calJac3.chr14 3453430 0 - 108792865 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=188572.000000 s hg38.chr2_KI270769v1_alt 51633 43 + 120616 GTATTAACAGCTAGTCT---------------------------------GTAAACTGAGATCGGAGTATTAACAG s panTro5.chr2A 3512225 43 + 111504155 GTATTAACAGCTAGTCT---------------------------------GTAAACTGAGATCAGAGTATTAACAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373178 43 + 114371477 GTATTAACAGCTAGTCT---------------------------------GTAAACTGAGATCAGAGTATTAACAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250641 76 + 637652 GTATTAACAGCTAGTCTGTACGTTGAGATCGGAGTATTAACAGCTAGTCGGTAAACTGAGATCGGAGTATTAACAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045572 43 + 81552678 GTATTAACAGCTAGTCT---------------------------------GTAAACTGAGATTAGAGTATTAACAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3307730 43 + 108979918 GTATTAACAGCTAGTCT---------------------------------GTAAATTGAGATCAGAGTATTAACAG i rheMac8.chr13 C 0 I 2421 s macFas5.chr13 5020605 43 - 111193037 GTATTAACAGCTAGTCT---------------------------------GTAAATTGAGACCAGAGTATTAACAG i macFas5.chr13 C 0 I 677 s macNem1.NW_012011978v1 3414192 43 + 3644372 GTATTAACAGCTAGTCT---------------------------------ATAAATTGAGATGGGAGTATTAACAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3369220 43 - 10304083 GTATTAACAGCTAGTCT---------------------------------GTAAATTGCGATCGGAGTATTAACAG i cerAty1.NW_012000820v1 C 0 I 194 s chlSab2.chr14 3458294 43 - 107702431 GTATTAACAGCTGGTCT---------------------------------GTAAATTGAGATCGGAGTATTAACAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1002013 43 + 1565135 GTATTAACAGCCAGTCT---------------------------------GTAAATTGAGATCGGAGTATTAACAG i manLeu1.NW_012104432v1 I 194 I 481 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2037202 0 + 64289059 C e saiBol1.JH378218 3103230 0 - 7082604 C e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 567113 0 + 2232271 C e otoGar3.GL873658 2536292 0 + 5252280 C e cebCap1.NW_016107454v1 588998 0 + 5243153 C e aotNan1.NW_018507213v1 1922809 0 - 1938448 C e calJac3.chr14 3453430 0 - 108792865 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=24687.000000 s hg38.chr2_KI270769v1_alt 51676 6 + 120616 CTAGTC s panTro5.chr2A 3512268 6 + 111504155 CTAGTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373221 6 + 114371477 CTAGTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250717 6 + 637652 CTAGTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045615 6 + 81552678 CTAGTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310194 6 + 108979918 CTAGTC i rheMac8.chr13 I 2421 C 0 s macFas5.chr13 5021325 6 - 111193037 CTAGTC i macFas5.chr13 I 677 C 0 s macNem1.NW_012011978v1 3414235 6 + 3644372 CCAGTC i macNem1.NW_012011978v1 C 0 I 257 s cerAty1.NW_012000820v1 3369457 6 - 10304083 CTAGTC i cerAty1.NW_012000820v1 I 194 C 0 s chlSab2.chr14 3458337 6 - 107702431 CTAGTC i chlSab2.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2037202 0 + 64289059 C e saiBol1.JH378218 3103230 0 - 7082604 C e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 567113 0 + 2232271 C e otoGar3.GL873658 2536292 0 + 5252280 C e cebCap1.NW_016107454v1 588998 0 + 5243153 C e aotNan1.NW_018507213v1 1922809 0 - 1938448 C e calJac3.chr14 3453430 0 - 108792865 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 1002056 481 + 1565135 I a score=17352.000000 s hg38.chr2_KI270769v1_alt 51682 5 + 120616 CCAAG s panTro5.chr2A 3512274 5 + 111504155 CCAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373227 5 + 114371477 CCAAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250723 5 + 637652 CCAAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045621 5 + 81552678 CCAAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310200 5 + 108979918 CCAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5021331 5 - 111193037 CCAAG i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3369463 5 - 10304083 CCAAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458343 5 - 107702431 CCAAG i chlSab2.chr14 C 0 C 0 e micMur3.chr8 2641341 4950 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2037202 0 + 64289059 C e saiBol1.JH378218 3103230 0 - 7082604 C e proCoq1.NW_012151163v1 953462 4144 + 1238772 I e dasNov3.JH580157 567113 0 + 2232271 C e otoGar3.GL873658 2536292 0 + 5252280 C e cebCap1.NW_016107454v1 588998 0 + 5243153 C e aotNan1.NW_018507213v1 1922809 0 - 1938448 C e calJac3.chr14 3453430 0 - 108792865 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 1002056 481 + 1565135 I e macNem1.NW_012011978v1 3414241 257 + 3644372 I a score=648316.000000 s hg38.chr2_KI270769v1_alt 51687 67 + 120616 TTGGGTTTGAGAACTTCCAGTAGA-GG-----TTTGTTTCTGTGCTTATCTTATAGAGCTTGAA-GGGTTCTTG s panTro5.chr2A 3512279 67 + 111504155 TTGGGTTTGAGAACTTCCAGTAGA-GG-----TTTGTTTCTGTGCTTATCTTACAGAGCTTGAA-GGGTTCTTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373232 67 + 114371477 TTGGGTTTGAGAACTTCCAGTAGA-GG-----TTTGTTTCTGTGCTTATCTTACAGAGCTTGAA-GGGTTCTTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250728 67 + 637652 TTGGGTTTGAGAACTTCCAGTAGA-GG-----TTTGTTTCTGTGCTTATCTTATAGAGCTTGAA-GGGTTCTTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045626 67 + 81552678 TTGGATTTGAGGACTTCCAGTATG-GG-----TTTGTTTCTGTGCTTATCTTATAGAGCTTGAA-GGGTTCCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310205 67 + 108979918 TTGGGTTTGAGAACTTCCAGTAGG-GG-----TTTGTTTCTGTGCTTACCTTATAGAGCTTGAA-GAGTTCTTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5021336 67 - 111193037 TTGGGTTTGAGAACTTCCAGTAGG-GG-----TTTGTTTCTGTGCTTACCTTATAGAGCTTGAA-GAGTTCTTG i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3369468 67 - 10304083 TTGGGTTTGAGAACTTCCAGTAGG-GG-----TTTGTTTCTGTGCTTACCTTATAGAGCTTGAA-GAGTTCTTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458348 67 - 107702431 TTGGGTTTGAGAACTTCCAGTAGG-GG-----TTTGTTTCTGTGCTTACCTTATAGAGCTTGAA-GGGTTCTTG i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3453430 66 - 108792865 CTGGGCTTGAGAACTACCAGTAGA-GG------TTGTTTCTGTGCTTCTGTAATGGAGCTTGAA-GGGTTCTTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103230 66 - 7082604 TTGGGGTTAAGAACTACCAGTAGA-GG------TTGTTTCTGTGCTTATATTATGGAGCTTGAA-GGGTTCCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 588998 66 + 5243153 TTGGGTTTGCGAACTACCAGTAGA-CG------TTGTTTCTGTGCTTATAGTATGGAGCTTGAA-GGGTTCTTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1922809 66 - 1938448 TTGGGTTTGAGAACTACCAGTAGA-GG------TTGTTTCTGTGCTTATATTGTGGAGCTTGAA-GGGTTCTTG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2646291 66 - 159902609 TTGGGTTTGAGAACCTCCAGTGGA-GT-----TTTG-TTCTGTGCTCAGCTTATAGAACTTGAA-GGGTTCTTG i micMur3.chr8 I 4950 I 253 s proCoq1.NW_012151163v1 957606 67 + 1238772 TTGGGTTTGAGAACTTCCAGTGGA-GT-----TTTG-TTCTGTGCTTAGCTTATGGAACTTGAAGGGGTTCTTG i proCoq1.NW_012151163v1 I 4144 C 0 s otoGar3.GL873658 2536292 62 + 5252280 -TGGGGTTGGGAAC-TGCAGTAGA-GC-----TCCG-TTCTATGCTTAGCTTGTAGAG--TGGA-GGGTTCCTG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2037202 65 + 64289059 ---GGTTTGAGAACATGCAGTAGACAG-----TTTGTTTTTGTGCTTATTTTACAGAACCTACA-GAGTTCTCA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 567113 69 + 2232271 ---GATTTGGAAATTTCTAGTAAC-AGAAGTTTTTGTTTCTGGGCTTGTCATGTAAAGCTTGAA-GAATTCTTG i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91415283 1115 - 120129022 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 1002056 481 + 1565135 I e macNem1.NW_012011978v1 3414241 257 + 3644372 I a score=103799.000000 s hg38.chr2_KI270769v1_alt 51754 12 + 120616 AGATATTCTCTC s panTro5.chr2A 3512346 12 + 111504155 AGATATTCTCTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373299 12 + 114371477 AGATATTCTCTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250795 12 + 637652 AGATATTCTCTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045693 12 + 81552678 AGATATTCTCTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310272 12 + 108979918 AGATATTCTCTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5021403 12 - 111193037 AGATATTCTCTC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3369535 12 - 10304083 AGATATTCTCTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458415 12 - 107702431 AGATATTCTCTC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3453496 12 - 108792865 AGATCGTCTTTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103296 12 - 7082604 AGATCATCTTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589064 12 + 5243153 AGATGGTCTTTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1922875 12 - 1938448 AGATTGTCTTTC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 957673 12 + 1238772 GTATATTCTCTC i proCoq1.NW_012151163v1 C 0 I 202 s otoGar3.GL873658 2536354 12 + 5252280 AGGTCTTGGCTC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2037267 12 + 64289059 AGATATTCTCTC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 567182 12 + 2232271 AGATATTTGCTC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2646357 253 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 1002056 481 + 1565135 I e macNem1.NW_012011978v1 3414241 257 + 3644372 I a score=881582.000000 s hg38.chr2_KI270769v1_alt 51766 115 + 120616 CCTTGTGGTAAGTGATAAACCACACAGG---AGTGATT--CTGGCCCCTTCTCTACTTGAGACAGAAGGATGGAAGTGACGTGGCTTACATATAACTTACCATGTTGGGCCGGTTCCACA s panTro5.chr2A 3512358 115 + 111504155 CCTTGTGGTAAGTGATAAACCACACAGG---AGTGATT--CTGGCCCCTTCTCTACTTGAGACAGAAGGATGGAAGTGACGTGGCTTACATATAACTTACCATGTTGGGCCGGTTCCACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373311 115 + 114371477 CCTTGTGGTAAGTGATAAACCACACAGG---AGTGATT--CTGGCCCCTTCTCTACTTGAGACAGAAGGATAGAAGTGACGTGGCTTACATATAACTTACCATGTTGGGCCGGTTCCACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250807 115 + 637652 CCTTGTGGTAAGTGATAAACCACACAGG---AGTGATT--CTGGCCCCTTCTCTACTTGAGACAGAAGGATGGAAGTGACGTGGCTTACATATAACTTACCATGTTGGGCCGGTTCCACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045705 115 + 81552678 CCTTGTGGTAAGTGCTAAACCACACAGG---AGTGATT--CTGGCCCCTTCTCTACTTGAGACAGAAGGATGGAAGTGACACGACTTACATATAACTTACCGTGTTGGGCCGGTTCCACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310284 115 + 108979918 CCTTGAGTTAAGTGATCAGCCACATAGG---AGTGATT--CTGGCCCCTTCTCTACTTGAGACAGAAGGATGGAAGTGACACGGCTTACATATAACTTACCATGTTGGGCCGGTTCCACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5021415 115 - 111193037 CCTTGAGTTAAGTGATCAGCCACATAGG---AGTGATT--CTGGCCCCTTCTCTACTTGAGACAGAAGGATGGAAGTGACACGGCTTACATATAACTTACCATGTTGGGCCGGTTCCACA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3369547 115 - 10304083 CCTTGAGTTAAGTGATCAGCCACATAGG---AGTGATT--CTGGCCCCTTCTCTACTTGAGACAGAAGGATGGAAGTGACACGGCTTACATATAACTTACCATGTTGGGCCGGTTCCACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458427 115 - 107702431 CCTTGAGGTAAGTGATCAGCCACATAGG---AGTGATT--CTGGCCCCTTCTCTACTTGAGACAGAAGGATGGAAGTGACACGGCTTACATATAACTTACCATGTTGGGCCGGTTCCACA i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3453508 115 - 108792865 CCTTGAGGTAGGTGATAAACCACACAGG---AGTGATT--ATGGCCCCTTCTCTACATGAGACAGAAGGATGGAAGTGACACAGCTTACATATAACTTACCATGTTGGGCTGGCTTCACA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103308 115 - 7082604 CCTTGAAGTAAGTGATAAACCACACAGG---AGTGATT--ACAGCCCCTTCTCTACACGAGACAGAAGGATGGAAGTAACACAGCTTTCGTGTAACTTACCATGTTGGGCTGGTTTCACA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589076 115 + 5243153 CCTTGAAGTAAGTGATAAACCAGACAGG---AGTGATT--ATGGCCCCTTCTCTACGCGAGACAGAAGGATGGAAGTGACACAGCTTACATATAACTTACCATGTTGGGCTGGCTTCACA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1922887 115 - 1938448 CCTTGAAGTAAGTGATAAACCACACAGG---AACGATT--ATGGCCCCTTCTCTACACGAGACAGAAGGATGGAAGTGACACAGCTTACATATAACTTACCGTGTTGGGCTGGTTTCACA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2536366 102 + 5252280 CCTAGAGGTCAGTTCCACACCATGCGGGAACAGCGGCTGGGTGGCGCGTTCTCCACTTGAAGCAGAGGGAAGGAACAG---CAGCTCTCACATGCCCCACTGTGT--------------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2037279 115 + 64289059 TCTGCAGGTGAATTCTCACCCACATGGG---AATGATC--ATTGCCTATTGTTTACTTGATATGAAGGGGTGGAAATGACACAGCTAATCCATGGCCTACCATGTTAGCATAGTCCCATA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 567194 109 + 2232271 CTTAAAGGTTAGTTGTAAACCATATGGG---AGCAATT--ATTGCCTATTCTCTACTTGATACATAAGAATGGAAATGACACAACTtcagcactgcgca------tgggccagctccaca i dasNov3.JH580157 C 0 I 130 e micMur3.chr8 2646357 253 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 957685 202 + 1238772 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 1002056 481 + 1565135 I e macNem1.NW_012011978v1 3414241 257 + 3644372 I a score=65696.000000 s hg38.chr2_KI270769v1_alt 51881 16 + 120616 GTGACATGACTTAC--AT s panTro5.chr2A 3512473 16 + 111504155 GTGACATGACTTAC--AT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373426 16 + 114371477 GTGACATGACTTAC--AT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250922 16 + 637652 GTGACATGACTTAC--GT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045820 16 + 81552678 GTGACATGACTTAC--AT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310399 16 + 108979918 GTGACGTGACTTAC--AT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5021530 16 - 111193037 GTGACGTGACTTAC--AT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3369662 16 - 10304083 GTGACGTGACTTAC--AT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458542 16 - 107702431 GTGACATGACTTAC--AT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3453623 14 - 108792865 GTGACATGACTTAC---- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103423 14 - 7082604 GTGACATGACTTAC---- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589191 13 + 5243153 GTGACGTGACTTA----- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1923002 16 - 1938448 GTGACATGACTTACAT-- i aotNan1.NW_018507213v1 C 0 I 877 s canFam3.chr17 2037394 4 + 64289059 GTTA-------------- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2646357 253 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 957685 202 + 1238772 I e dasNov3.JH580157 567303 130 + 2232271 I e otoGar3.GL873658 2536468 0 + 5252280 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 1002056 481 + 1565135 I e macNem1.NW_012011978v1 3414241 257 + 3644372 I a score=24470.000000 s hg38.chr2_KI270769v1_alt 51897 8 + 120616 ATGACTTA s panTro5.chr2A 3512489 8 + 111504155 ATGACTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373442 8 + 114371477 ATGACTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250938 8 + 637652 ATGACTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045836 8 + 81552678 ATGACTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310415 8 + 108979918 ATGACTTG i rheMac8.chr13 C 0 I 1 s macFas5.chr13 5021546 8 - 111193037 ATGACTTG i macFas5.chr13 C 0 I 1 s cerAty1.NW_012000820v1 3369678 8 - 10304083 ATGACTTG i cerAty1.NW_012000820v1 C 0 I 1 s chlSab2.chr14 3458558 8 - 107702431 ATGACTTG i chlSab2.chr14 C 0 I 1 e micMur3.chr8 2646357 253 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2037398 0 + 64289059 C e saiBol1.JH378218 3103437 0 - 7082604 C e proCoq1.NW_012151163v1 957685 202 + 1238772 I e dasNov3.JH580157 567303 130 + 2232271 I e otoGar3.GL873658 2536468 0 + 5252280 C e cebCap1.NW_016107454v1 589204 0 + 5243153 C e aotNan1.NW_018507213v1 1923018 877 - 1938448 I e calJac3.chr14 3453637 0 - 108792865 C e colAng1.NW_012118821v1 3353746 13634 - 13651311 I e manLeu1.NW_012104432v1 1002056 481 + 1565135 I e macNem1.NW_012011978v1 3414241 257 + 3644372 I a score=14976.000000 s hg38.chr2_KI270769v1_alt 51905 2 + 120616 AT s panTro5.chr2A 3512497 2 + 111504155 AT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373450 2 + 114371477 AT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250946 2 + 637652 AT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045844 2 + 81552678 AT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310424 2 + 108979918 AT i rheMac8.chr13 I 1 C 0 s macFas5.chr13 5021555 2 - 111193037 AT i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3414498 2 + 3644372 AT i macNem1.NW_012011978v1 I 257 C 0 s cerAty1.NW_012000820v1 3369687 2 - 10304083 AT i cerAty1.NW_012000820v1 I 1 C 0 s chlSab2.chr14 3458567 2 - 107702431 AT i chlSab2.chr14 I 1 C 0 s manLeu1.NW_012104432v1 1002537 2 + 1565135 AT i manLeu1.NW_012104432v1 I 481 C 0 s calJac3.chr14 3453637 2 - 108792865 AC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103437 2 - 7082604 AT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589204 2 + 5243153 AT i cebCap1.NW_016107454v1 C 0 C 0 e micMur3.chr8 2646357 253 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e canFam3.chr17 2037398 0 + 64289059 C e proCoq1.NW_012151163v1 957685 202 + 1238772 I e dasNov3.JH580157 567303 130 + 2232271 I e otoGar3.GL873658 2536468 0 + 5252280 C e aotNan1.NW_018507213v1 1923018 877 - 1938448 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=963140.000000 s hg38.chr2_KI270769v1_alt 51907 110 + 120616 TGTAGGCCAGTCCCCTGTGTCATTATGCGGATGGTCTAGAAATGTTTATTTCTAGAAAACCGAAGTGACTCAGGCTGTAACTTAAGCTCGGCC-------------------------------AGATATTCTCTTGAGAT s panTro5.chr2A 3512499 110 + 111504155 TGTAGGCCAGTCCCCTATGTCATTATGCGGATGGTCTAGAAATGTTTATTTCTAGAAAACCGAAGTGACTCAGGCTGTAACTTAAGCTCGGCC-------------------------------AGATATTCTCTTGAGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373452 110 + 114371477 TGTAGGCCAGTCCCCTATGTCATTATGCGGATGGTCTAGAAATGTTTATTTCTAGAAAACCGAAGTGACTCAGGCTGTAACTTAAGCTCGGCC-------------------------------AGATATTCTCTTGAGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 250948 110 + 637652 TGTAGGCCAGTCCCCTGTGTCATTATGCGGATGGTCTAGAAATGTTTATTTCTAGAAAACCGAAGTGACTCAGGCTGTAACTTAAGCTCGGCC-------------------------------AGACATTCTCTTGATAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045846 109 + 81552678 TGTAGACCAGTCCCCTGTGTCATTATGCTGATGGTCTAGAAATGTTTATTCCTAGAAAACCGAAGTGACTCAGGCTGTAACTTAAGCTCGGCC-------------------------------AGACA-TCTCTTGAGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310426 110 + 108979918 TGCAGGCCAGTCCCCTGCGTCATTATACTGATGGTCTAGAAATGTTTATTTCTGGGAAACCGAAGTGACTCAGGTTGTAACTTAAGCTCAGCC-------------------------------AGACATTCTCTTGAGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5021557 110 - 111193037 TGCAGGCCAGTCCCCTGCGTCATTATACTGATGGTCTAGAAATGTTTATTTCTGGGAAACCGAAGTGACTCAGGTTGTAACTTAAGCTCAGCC-------------------------------AGACATTCTCTTGAGAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3414500 110 + 3644372 TGCAGGCCAGTCCCCTGCATCATTATACTGATGGTCTAGAAATGTTTATTTCTGGGAAACCGAAGTGACTCAGGTTGTAACTTAAGCTCAGCC-------------------------------AGACATTCTCTTGAGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3369689 110 - 10304083 TGCAGGCCAGTCCCCTGCGTCATTATACTGATGGTCTAGAAATGTTTATTTCTGGGAAACTGAAGTGACTCAGGTTGTAACTTAAGCTCAGCC-------------------------------AGACATTCTCTTGAGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458569 110 - 107702431 TGCAGGCCAGTCCCCTGCGTCATTATACTGATGGTCTAGAAATGTTTATTTCTGGGAAACCGAAGTGACTCAGGTTGTAACTTAAGCTCAGCC-------------------------------AGACATTCTCTTGAGAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1002539 110 + 1565135 TGCAGGCCAGTCCCCTGCGTCATTATACTGATGGTCTAGAAATGTTTATTTCTGGGAAACCGAAGTGACTCAGGTTGTAACTTAAGCTCAGCC-------------------------------AGACATTCTCTTGAGAT i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3453639 106 - 108792865 TGGAGGCCAGTCCCCTGTGTCTTTATGCTGATAGTCTAGAAATGTTGATTTCTAGGAAACCAAAGAAACTCAGGCTGTAACTTAAGCTCAGTC-----------------------------------ATTCTCTTAAGAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103439 106 - 7082604 TGGAGGCCAGTCCCCTGTGTCATTATGCTGTTAGTCTAGAAATGTTGATTTCTAGGAAACCAAAGTTACTCAGGCTGTAACTTAAGCTCAGTC-----------------------------------ATTCTCTTAAGAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589206 106 + 5243153 TGGAGGCCAGTCCCCTGTGTCATTATGCTGATAGTCTAGAAATGTTGATTTCTAGGAAACCAAAGTACCTCAGGCTGAAACTTAAGCTCAGTC-----------------------------------ATTCTCTTAAGAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1923895 106 - 1938448 CGGAGGCCAGTCCCCTGTGTCATTATGCTGATAGACTAGAAATGTTGATTTCTAGGAAACCGAAGTAACCCAGGCTGTAACTTAAGCTCAGTC-----------------------------------ATTCTCTTAAGAT i aotNan1.NW_018507213v1 I 877 C 0 s otoGar3.GL873658 2536468 104 + 5252280 --CAGCCCAGGCCCTCGTTGAGTCATGCCGATGGTCAGGAA----CTAGTTCTAGGGAACTGAAATGACTCATAGTGTAAATTAAAGTCAGTT-------------------------------ATTCATCCTCTTCAGAC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2037398 119 + 64289059 ---------------------GTGATGCTCAT-GTCAAGACACTTTTCTTTCTAGGAAGTAGAAACAACTCCTTCCAGAGTGTAAACTCAATCATCCATCCTCTTTTTTTTTCATTTTTTTTTTATCCATCCTCTTTAAAC i canFam3.chr17 C 0 C 0 e micMur3.chr8 2646357 253 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 957685 202 + 1238772 I e dasNov3.JH580157 567303 130 + 2232271 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=340971.000000 s hg38.chr2_KI270769v1_alt 52017 28 + 120616 ACAG-AAATTATTTAGTGGCATCAAAAAA s panTro5.chr2A 3512609 28 + 111504155 ACAG-AAATTATTTAGTGGCATCAAAAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373562 28 + 114371477 ACAG-AAATTATTTAGTGGCATCAAAAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251058 28 + 637652 ACAG-AAATTATTTAGTGGCATCAAAAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045955 28 + 81552678 ACAG-AAATTATTTAGTGGCATCAAAAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310536 28 + 108979918 ACAG-AAATTATTTAGTGGCATCAAAAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5021667 28 - 111193037 ACAG-AAATTATTTAGTGGCATCAAAAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3414610 28 + 3644372 ACAG-AAATTATTTAGTGGCATCAAAAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3369799 28 - 10304083 ACAG-AAATTATTTAGTGGCATCAAAAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458679 28 - 107702431 ACAG-AAATTATTTAGTGGCATCAAAAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1002649 28 + 1565135 ACAG-AAATTATTTAGTGGCATCAAAAAA i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3453745 28 - 108792865 ACAG-AAATTATTCACCGGCATCAAAAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103545 28 - 7082604 ACAG-AAATTATTTAGTGGCATCAAAAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589312 28 + 5243153 ACAG-AAATCATTTAGTGGCATCAAAAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924001 28 - 1938448 ACAG-AAATTATTTAGTGGCATCAAAAAA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 957887 28 + 1238772 ACAG-AAATTATTTAATGTCATCAAAAAA i proCoq1.NW_012151163v1 I 202 I 1 s otoGar3.GL873658 2536572 29 + 5252280 ATGGAAAATAATTTAATGTCATCAGTAAA i otoGar3.GL873658 C 0 I 1 s canFam3.chr17 2037517 28 + 64289059 ATAG-GAATTATTTAGTATCCCTAAAAAA i canFam3.chr17 C 0 C 0 e micMur3.chr8 2646357 253 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e dasNov3.JH580157 567303 130 + 2232271 I e colAng1.NW_012118821v1 3353746 13634 - 13651311 I a score=51961.000000 s hg38.chr2_KI270769v1_alt 52045 6 + 120616 -GAAAGT s panTro5.chr2A 3512637 6 + 111504155 -GAAAGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373590 6 + 114371477 -GAAAGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251086 6 + 637652 -GAAAGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045983 6 + 81552678 -GAAAGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310564 6 + 108979918 -GAAAGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5021695 6 - 111193037 -GAAAGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3414638 6 + 3644372 -GAAAGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3369827 6 - 10304083 -GAAAGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458707 6 - 107702431 -GAAAGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1002677 6 + 1565135 -GAAAGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3367380 6 - 13651311 -GAAAGT i colAng1.NW_012118821v1 I 13634 C 0 s calJac3.chr14 3453773 5 - 108792865 --AAAGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103573 6 - 7082604 -GAAAGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589340 6 + 5243153 -TAAAGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924029 6 - 1938448 -GAAAGT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 957916 6 + 1238772 -GTGAAC i proCoq1.NW_012151163v1 I 1 C 0 s otoGar3.GL873658 2536602 6 + 5252280 -GTAAAC i otoGar3.GL873658 I 1 C 0 s canFam3.chr17 2037545 6 + 64289059 AAAAAA- i canFam3.chr17 C 0 I 2 e micMur3.chr8 2646357 253 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e dasNov3.JH580157 567303 130 + 2232271 I a score=1216292.000000 s hg38.chr2_KI270769v1_alt 52051 94 + 120616 TTAAACATTTTAAGTTCAATAATTGTTACCTTTCTTTTCTCCAGGCTTATAATCACAATAGAA-CTGTTTTCCATAGTGTTCCTTAATTTTGACT s panTro5.chr2A 3512643 94 + 111504155 TTAAACATTTTAAGTTCAATAATTGTTACCTTTCTTTTCTCCAGGCTTATAATCACAATAGAA-CTGTTTTCCATAGTGTTCCTTAATTTTGACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373596 94 + 114371477 TTAAACATTTTAAGTTCAATAATTGTTACCTTTCTTTTCTCCAGGCTTATAATCACAATAGAA-CTGTTTTCCATAGTGTTCCTTAATTTTGACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251092 94 + 637652 TTAAACATTTTAAGTTCAATAATTGTTACCTTTCTTTTCTCCAGGCTTATAATCACAATAGAA-CTGTTTTCCATAGTGTTCCTTAATTTTGACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3045989 94 + 81552678 TTAAACATTTTAAGTTCAATAATTGTTATCTTTCTTTTCTCCAGGCTTATAATCACCATAGAA-CTATTTTCCATAGTGTTCCTTAATTTTGACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310570 93 + 108979918 TTAAACATTTTAATTTCAATAATTGTTATCTTTCTTTTCTCCA-GCTTATCATCACAGTAAAA-CTATTTTCCATAGTGTTCTTTAATTTTCATT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5021701 93 - 111193037 TTAAACATTTTAATTTCAATAATTGTTATCTTTCTTTTCTCCA-GCTTATCATCACAGTAAAA-CTATTTTCCATAGTGTTCTTTAATTTTCATT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3414644 93 + 3644372 TTAAACATTTTAATTTCAATAATTGTTATCTTTCTTTTCTCCA-GCTTATCATCACAGTAAAA-CTATTTTCCATAGTGTTCTTTAATTTTCATT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3369833 93 - 10304083 TTAAACATTTTAATTTCAATAATTGTTATCTTTCTTTTCTCCA-GCTTATCATCACAGTAAAA-CTGTTTTCCATAGTGTTCCTTAATTTTCACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458713 93 - 107702431 TTAAACATTTTAATTTCAATAATTGTTATCTTTCTTTTCTCCA-GCTTATCATCACAGTAAAA-CTATTTTCCATAGTGTTCCTTAATTTTCACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1002683 93 + 1565135 TTAAACATTTTAATTTCAATAATTGTTATCTTTCTTTTCTCCA-GCTTATCATCACAGTAAAA-CTATTTTCCATAGTGTTCCTTAATTTTCATT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3367386 93 - 13651311 TTAAACATTCTAATTTCAATAATTGTTATCTTTCTTTTCTGCA-GCTTATCATCACAGTAAAA-CTATTTTCCATAGTGTTCCTTAATTTTCACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3453778 92 - 108792865 TTAAAAGTTTTAAGTTCAATAATTGTTATCTTTTTTTTCTCCAGGCTTAGAGTCATAAT--AA-CTATTTTCCATAGTATCCCTTAATTTTGACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103579 94 - 7082604 TTAAACATTTTAAGTTCAATAATTGTTATCTTTCTTTTCTCCAGGCTTATAGTCATAATAGAA-CTATTTTCCATAGTGTCCCTTAATTTTGACT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589346 94 + 5243153 TTAAACATTTTAAGTTCAATAATTGTTATCTTTCTTTTCTCCAGGCTTATGGTCACAATAGAA-CTATTTTCCATCGTGTCCCTTAATTTTGACT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924035 94 - 1938448 TTAAACATTTTAAGTTCAATAATTGTTATATTTCTTTTCTCCAGGCTTACAGTCATAACAGCA-CTATTTTCCATAGTGTCCCTTAATTTTGACT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2646610 91 - 159902609 TTAAACATTTTAAATTCAATAA---TTATCTTTCCTTCCTCCAGACTTATATTCACAATAAAA-CTATTTTCCATAGCGTTCTTTATTTTTGACT i micMur3.chr8 I 253 I 194 s proCoq1.NW_012151163v1 957922 91 + 1238772 TTAAACATTTTAAATTCAATAA---TTATCTTTCTTTTCCCCAGACTTAGGTTCACAATAAAA-CCATTTTCCATCATGTTCCTTATTTTTGACT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2536608 89 + 5252280 TTAAACATCTTGAGTTCGATAG---TTATCTTTC-TTTCTCCAGACTGGTATCTGCAGGTGAA-CTG-CTTCCATCGTGTTCCTTAGTTTTGACT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2037553 95 + 64289059 TCAGACATTTAAAATTCAATAATTGTCATCTTTCTTTCCTCTGGACTTACAGTCACCGTAGAACCTATTTTTTGTGGAGTTCCTTATTTGTGACC i canFam3.chr17 I 2 I 7 e mm10.chr12 91415283 1115 - 120129022 I e dasNov3.JH580157 567303 130 + 2232271 I a score=34596.000000 s hg38.chr2_KI270769v1_alt 52145 3 + 120616 GTC s panTro5.chr2A 3512737 3 + 111504155 GTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373690 3 + 114371477 GTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251186 3 + 637652 GTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046083 3 + 81552678 GTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310663 3 + 108979918 GTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5021794 3 - 111193037 GTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3414737 3 + 3644372 GTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3369926 3 - 10304083 GTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458806 3 - 107702431 GTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1002776 3 + 1565135 GTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3367479 3 - 13651311 GTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3453870 3 - 108792865 ATC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103673 3 - 7082604 ATC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589440 3 + 5243153 ATC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924129 3 - 1938448 CTC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 958013 3 + 1238772 GTC i proCoq1.NW_012151163v1 C 0 I 136 s otoGar3.GL873658 2536697 1 + 5252280 --C i otoGar3.GL873658 C 0 I 1 s canFam3.chr17 2037655 3 + 64289059 ATC i canFam3.chr17 I 7 C 0 e micMur3.chr8 2646701 194 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e dasNov3.JH580157 567303 130 + 2232271 I a score=1504584.000000 s hg38.chr2_KI270769v1_alt 52148 146 + 120616 -TTCTTTTTGGACCTTTGTTATTAAAGACCATA---------AACAT-------------------------AAAGCTCATTTCAGTGTGG-T-CACGGCCCATTCTCAGTAATGGTTAATGAA---TAGacagatggatgcattgaggcacagat-----------acattaagtggcttgcagaagtcatacgcg- s panTro5.chr2A 3512740 146 + 111504155 -TTCTTTTTGGACCTTTGTTATTAAAGACCATA---------AACAT-------------------------AAAGCTCATTTCAGTGTGG-T-CACGGCCCATTCTCAGTAATGGTTAATGAA---TAGacagatggatgcattgaggcacagat-----------acgttaagtggcttgcagaagtcatacgcg- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373693 146 + 114371477 -TTCTTTTTGGACCTTTGTTATTAAAGACCATA---------AAAAT-------------------------AAAGCTCATTTCAGTGTGG-T-CACGGCCCATTCTCAGTAATGGTTAATGAA---TAGacagatggatgcattgaggcacagat-----------acgttaagtggcttgcagaagtcatacgcg- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251189 146 + 637652 -TTCTTTTTGGACCTTTGTTATTAAAGACCATA---------AACAT-------------------------AAAGCTCATTTCAGTGTGG-T-CACGGCCCATTCTCAGTAATGGTTAATGAA---TAGacagatggatgcattgaggcacagat-----------acgttaagtggcttgcagaagtcatacGCA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046086 146 + 81552678 -TTCTTTTTGGACCTTTCTTATTAGAGACCATA---------AACAT-------------------------AAAGCTCGTTTCAGTGTGG-T-CAAGGCCCATTCTCAGTAATGGTTAATGAA---TAGacagatggatacattgaggcacagat-----------gtgttaagtggcttgcagaagtcatacgcg- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310666 146 + 108979918 -TTCTTTTTGGACCTTTCTTATTAAAGACCATA---------ACCAT-------------------------AAAGCTCATTTCAGTGTGG-T-TGTGGCCCATTCTCAGTAATGGTTAATGAA---TAGacagatggatgcactgaggcacagag-----------atgttaagtggcttgcagaagtcacacgcg- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5021797 146 - 111193037 -TTCTTTTTGGACCTTTCTTATTAAAGACCATA---------ACCAT-------------------------AAAGCTCATTTCAGTGTGG-T-TGTGGCCCATTCTCAGTAATGGTTAATGAA---TAGacagatggatgcactgaggcacagag-----------atgttaagtggcttgcagaagtcacacgcg- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3414740 146 + 3644372 -TTCTTTTTGGACCTTTCTTATTAAAGACCATA---------ACCAT-------------------------AAAGCTCATTTCAGTGTGG-T-TGTGGCCCATTCTCAGTAATGGTTAATGAA---TAGacagatggatgcactgaggcacagag-----------atgttaagtggcttgcagaagtcacacgcg- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3369929 146 - 10304083 -TTCTTTTTGGACCTTTCTTATTAAAGACCATA---------ACCAT-------------------------AAAGCTCATTTCAGTGTGG-T-CGTGGCCCATTCTCAGTAATGGTTAATGAA---TAGacagatggatgcactgaggcacagag-----------atgttaagtggcttgcagaagtcacacgcg- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458809 146 - 107702431 -TTCTTTTTGGACCTTTCTTATTAAAGACCATA---------ACCAC-------------------------AAAGCTTATTTCAGTGTGG-T-TATGGCCCATTCTCAGTAATGGTTAATGAA---TAGacagatggatgcactgaggcacagag-----------gtgttaagtggcttgcagaagtcacacgcg- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1002779 157 + 1565135 -TTCTTTTTGGACCTTTCTTATTAAAGACCATA---------ACCAT-------------------------AAAGCTCATTTCAGTGTGG-T-CGTGGCCCATTCTCAGTAATGGTTAAGGAA---TAGACAGATGGATACACTGAGGCACAGAGATGTGCAAAATATGTTAAGTGGCTTGCAGAAGTCACACGCG- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3367482 146 - 13651311 -TTCTTTTTGGACCTTTCTTATTAAAGACCATA---------ACCAT-------------------------AAAGCTCATTTCAGTGTGG-T-CATGGCCCATTCTCAGTAATGGTTAATGAA---TAGacagatggatgcattgaggcacagag-----------atgttaagtggcttgcagaagtcacacaCG- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3453873 146 - 108792865 -TTCCTTTTGGACCTTTTTTATTAAAGAGCATA---------AACAT-------------------------AAAGCCCATTTCAGTGTGG-T-CGTGGCACACTCTCAGTAATGGCTAGTGAA---TAGacagatggacgcattgaggcccagag-----------atgttaactggcttacagaagtcacacaCT- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103676 146 - 7082604 -TTCTTTTTGGACCTTTTTTATTAAAGAGCCTA---------AACAT-------------------------AAAGCCCATTTCAGTGTGG-T-TGTGGCACACTCTCAGTAATGGCTAGTGAA---TAGacagatggacgcattgagacccagag-----------atgttaagtggcttacagaagtcacatgct- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589443 149 + 5243153 -TTCTTGTTGGACCTTTTTTATTAAAGAGCATA---------AACAT-------------------------AAAGCCCATTTCAGTGTGG-T-CGTGGTGCACTCTCAGTAATGGCTAGTGAACAGTAGacagatggacgcattgaggcccagag-----------atgttaggtggcttacagaagtcacacgct- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924132 146 - 1938448 -TTCCTTTTGGACCTTTTTTATTAAAGAGCATA---------AACAC-------------------------AAAGCCCATTTCAGTGTGG-T-CGTGCCACACTCTCAGTAATGGCTAGTGAA---TAGacagatggacgcattgaggcccagag-----------atgttaagtggcttacagaagtcacacgct- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2536699 139 + 5252280 -TCCTTTTTGGACCTTTCTTATGGAAGACCCT----------GCCGT-------------------------AAAGCTCTTCTTGGGGTGGCC-CCTCGTACACCCACAGAAGTGGTGAGTAGG---T-----GAGAGGTGTTTTGAGGCTCAGCG-----------GTTTCA--TCGCTGTTCAGTGTCACTCAGC- i otoGar3.GL873658 I 1 I 1 s canFam3.chr17 2037658 175 + 64289059 TTTCTT------CCATCTTTATTAAAGACCATAGAGCATCATACCATTTCAAGGTGAGAAGGAGCTCAGTTGAGAAGCCATCTTAGTGTGG-TACGTGACAGACTCTCCCTGTTGATTAATGGT---CAGGcaggtgggcagacccaggcacagag-----------agg--gagtcacttgcaggtgtcacacaact i canFam3.chr17 C 0 C 0 e micMur3.chr8 2646701 194 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 958016 136 + 1238772 I e dasNov3.JH580157 567303 130 + 2232271 I a score=618986.000000 s hg38.chr2_KI270769v1_alt 52294 48 + 120616 tgttTTCTCACCATCTTTCAGACTATATTCCAGATCCGAATATTCATC s panTro5.chr2A 3512886 48 + 111504155 tgttTTCTCACCATCTTTCAGACTACATTCCAGATCCGAATATTCATC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373839 48 + 114371477 tgttTTCTCACCATCTTTCAGACTACATTCCAGATCCGAATATTCATC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251335 47 + 637652 TGTTTTCTCACCATCTTTCAGACTATA-TCCAGATCCAAATATTCATC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046232 48 + 81552678 tgttCTCTCACCATCTTTCAGACTATATTCCAGATCCGAATATTCGTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310812 48 + 108979918 tgttTCCTCACCGTCTTTCAGACTATATTCCAGATCCGAATATTCATC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5021943 48 - 111193037 tgttTCCTCACCGTCTTTCAGACTATATTCCAGATCCGAATATTCATC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3414886 48 + 3644372 tgttTCCTCACCATCTTTCAGACTATATTCCAGATCCGAATATTCATC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3370075 48 - 10304083 tgttTCCTCACCATCTTTCAGACTATATTCCAGATCCGAATATTCATC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3458955 48 - 107702431 tgttTCCTCACCATCTTTCAGACTATATTCCAGATCCAAATATTCATC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1002936 48 + 1565135 TGTTTCCTCACCATCTTTCAGACTATATTCCAGATCCGAATATTCATC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3367628 48 - 13651311 TGTTTCCTCGCCATCTTTCAGACTATATTCCAGATCCGAATATTCATC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454019 48 - 108792865 TGTTTTCTCACCATCTTTCAAACTATATTCCAGATCTGAATATTCATC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103822 48 - 7082604 tgtTTTCTCACCATCTTTCAAACTATATTCCAGATCTGAATATTCATC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589592 48 + 5243153 tgtTTTCTTACCATCTTTCAAACTATATTCCAGATCTGAAAATTCATC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924278 48 - 1938448 tgtTTTCTCACCATCTTTCAAACTATATTCCAGATCTGAATATTCATC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 958152 48 + 1238772 TGTTTTCTCAGCATCTTCCAAACTATATTCCAGATCTGAATGTTAACA i proCoq1.NW_012151163v1 I 136 C 0 s otoGar3.GL873658 2536839 48 + 5252280 TGTTTCCTCCACATCTTCCAAGCCGTATTCCGGATCTGAATATTAACA i otoGar3.GL873658 I 1 C 0 s canFam3.chr17 2037833 41 + 64289059 tgtTTTCTAACCATCTTCCAAACTGTA-------TCTAAATACTTGAC i canFam3.chr17 C 0 C 0 e micMur3.chr8 2646701 194 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e dasNov3.JH580157 567303 130 + 2232271 I a score=683852.000000 s hg38.chr2_KI270769v1_alt 52342 52 + 120616 -GCTTAGGCCTATTTTGAAAAGCACTTTACTGAATCTATGTGATTGCCCTCT---G s panTro5.chr2A 3512934 54 + 111504155 -GCTTAGGCCTATTTTGAAAAGCACTTTACTGAATCTATGTGATTGCCCTCT-TTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373887 54 + 114371477 -GCTTAGGCCTATTTTGAAAAGCACTTTACTGAATCTATGTGATTGCCCTCT-TTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251382 54 + 637652 -GCTTAGGCCTATTTTGAAAAGCACTTTACTGAATCTATGTGATTGCCCTCT-TTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046280 55 + 81552678 -GCTTAGGCCTGTTTTGAAAAGCACTTTACTGAATCTATGTGATTGCCCTCTGCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310860 55 + 108979918 -ACTTAGGCCTATTTTGAAAAGCACTTTGCTGAATACATGTGATTGCCCTCTGCTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5021991 55 - 111193037 -ACTTAGGCCTATTTTGAAAAGCACTTTGCTGAATACATGTGATTGCCCTCTGCTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3414934 55 + 3644372 -ACTTAGGCCTATTTTGAAAAGCACTTTGCTGAATACATGTGATTGCCCTCTGCTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3370123 55 - 10304083 -ACTTAGGCCTATTTTGAAAAGCACTTTGCTGAATACATGTGATTACCCTCTGCTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3459003 55 - 107702431 -ACTTAGGCCTATTTTGAAAAGCACTTTGCTGAATACATGTGATTGCCCTCTGCTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1002984 55 + 1565135 -ACTTAGGCCTATTTTGAAAAGCACTTTGCTGAATACGTGGGATTACCCTCTGCTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3367676 55 - 13651311 -ACTTAGGCCTATTTTGAAAAGCACTTTGCTGAATACATGTGATTGCCCTCTGCTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454067 55 - 108792865 -ACTTAGGCCTATTTTGAAAAGCGCTTTACTGAATCTATGTGATTGCCCTCTGCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103870 55 - 7082604 -ACTTAGGCCTATTTTGAAAAGCGCTTTACTGAATCTATGTGATTGCCCTCTGCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589640 55 + 5243153 -ACTTAGGCCTATTTTGAAAAGCGCTTTACTGAATCTATGCAGTTGCCCTCTGCTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924326 55 - 1938448 -ACTTAGGCCTGTTTTGAAAAGCGCTTTACTGAATCTGTGTGATTGCCCTCTGCTG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2646895 52 - 159902609 -GCTTAGGACTACTGTGAAAAGCCCCTTACTGAATCTGCGTGATTGCCCTCTG--- i micMur3.chr8 I 194 I 465 s proCoq1.NW_012151163v1 958200 52 + 1238772 -GCTTAGGACTATTGTGAAAAGTCTTTTACTGAATCTGTGTGATTGCCCTCTG--- i proCoq1.NW_012151163v1 C 0 I 503 s otoGar3.GL873658 2536887 51 + 5252280 -GTGTGGGCCTGTTCTGCAGGGTCCTTC-CTGAATCTGTGTCGTTGCCATCTG--- i otoGar3.GL873658 C 0 I 3 s canFam3.chr17 2037874 56 + 64289059 GCCTCCAGTCTGTTTTGAAAAGCCCTCTTCTGACTCTTCAGGATCACCCTGTGTTG i canFam3.chr17 C 0 C 0 e mm10.chr12 91415283 1115 - 120129022 I e dasNov3.JH580157 567303 130 + 2232271 I a score=115979.000000 s hg38.chr2_KI270769v1_alt 52394 11 + 120616 GCATTTCTC-TA s panTro5.chr2A 3512988 11 + 111504155 GCATTTCTC-TA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373941 11 + 114371477 GCATTTCTC-TG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251436 11 + 637652 GCATTTCTC-TA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046335 11 + 81552678 GCATTTCTC-TA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310915 11 + 108979918 GCATTTCTC-TG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022046 11 - 111193037 GCATTTCTC-TG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3414989 11 + 3644372 GCATTTCTC-TG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3370178 11 - 10304083 GCATTTCTC-TG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3459058 11 - 107702431 GCATTTCTC-TG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1003039 11 + 1565135 GCATTTCTC-TG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3367731 11 - 13651311 GCGTTTCTC-TG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454122 11 - 108792865 GCATTTCTC-TA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103925 12 - 7082604 GCATTTCTCTTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589695 11 + 5243153 GCATTTCTC-TA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924381 11 - 1938448 GCATTTCTC-TG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2536941 11 + 5252280 GCATTTCCA-TA i otoGar3.GL873658 I 3 I 22 s canFam3.chr17 2037930 11 + 64289059 TCATGTTCA-AA i canFam3.chr17 C 0 C 0 e micMur3.chr8 2646947 465 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 958252 503 + 1238772 I e dasNov3.JH580157 567303 130 + 2232271 I a score=593009.000000 s hg38.chr2_KI270769v1_alt 52405 60 + 120616 TTCTTTATCTCATTTATAATCAG---------------TGCACGCTATTTGATTTTTTGATGATTGTTATCTACT s panTro5.chr2A 3512999 60 + 111504155 TTCTTTATCTCATTTATAATCAG---------------TGCACGCTATTTGATTTTTTGATGATTGTTATCTACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3373952 60 + 114371477 TTCTTTATCTCATTTATAATCAG---------------TGCACGCTATTTGATTTTTTGATGATTGTTATCTACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251447 60 + 637652 TTCTTTATCTCATTTATAATCAG---------------TGCACGCTATTTGATTTTTTGATGATTGTTATCTACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046346 60 + 81552678 TTCTTTATCTTATTTATAATGAA---------------TGCATGCTATTTGATTTTGTGATGATTGTTATCTACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310926 60 + 108979918 TTCTTTATCTCATTTATAATCAA---------------TGCATGCTATTTGATTTTTTGCTGATTGTTATCTACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022057 60 - 111193037 TTCTTTATCTCATTTATAATCAA---------------TGCATGCTATTTGATTTTTTGCTGATTGTTATCTACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415000 60 + 3644372 TTCTTTATCTCATTTATAATCAA---------------TGCATGCTATTTGATTTTTTGCTGATTGTTATCTACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3370189 60 - 10304083 TTCTTTATCTCATTTATAATCAA---------------TGCATGCTATTTGATTTTTTGCTGATTGTTATCTACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3459069 60 - 107702431 TTCTTTATCTCATTTATAATCAA---------------TGCATGCTATTTGATTTTTTGCTGATTGTTATCTACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1003050 60 + 1565135 TTCTTTATCTCATTTATAATCAA---------------TGCATGCTATTTGATTTTTTGCTGATTGTTATCTACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3367742 60 - 13651311 TTCTTTATCTCATTTATAATCAA---------------TGCGTGCTATTTGATTTTTTGATGATTGTTATCTACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454133 57 - 108792865 TTCTTTATCTCATTTCTAATCAA---------------TACATGCTATTTGATCTTTCAATG---GTTATGTACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103937 60 - 7082604 TTCTTTATCTCATTTCTAATCAA---------------TACATGCTATTTGATCTTTCAATGATTGTTATGTACT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589706 57 + 5243153 ---TTTATCTCATTTCTAATCAA---------------TACATGCTATTTGATCTTTTGATGATTGTTATGTACT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924392 60 - 1938448 TTCTTTATCTCATTTCTAATCAA---------------TACATGCTATTTGATCTTTTGACAATTGTTATGTACC i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2037941 75 + 64289059 TCCATTACCTCACTTATGACAGGCTGTTTGCAATTTTTTTTAGGCTGTTTGCAATTTTGATGGTTTATATGTACT i canFam3.chr17 C 0 C 0 e micMur3.chr8 2646947 465 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 958252 503 + 1238772 I e dasNov3.JH580157 567303 130 + 2232271 I e otoGar3.GL873658 2536952 22 + 5252280 I a score=3810110.000000 s hg38.chr2_KI270769v1_alt 52465 404 + 120616 TAGTATACATACTACAGATCAAATTCCAAATCCTATTAGAAGAGAACACAATATTAACAAAAAGTTGACCTTACCCTGAGAGATGATGCAGCCACAGGT-GATACGATATA-AAGGGGGTTTCTCCTGAGCTTCTTCCT-------------------CTTCTTAGCGCACGCAA-----A-----------GCCAGGCAGCTCTGGGTGATGGATTTTTCAAGTCCAGCTCCCTTGCCTCCTG----------TCAGAGGTGGAACGCA--GGCTCCAG-GGCCACATGGA------------------------------------------ATCCAGTGGGAGGCCCATCCCCAGGGCCGAGGCCTGAGACGCAcctgtgctcagtttc-gcctcctccccactggttttcccgggagcacttccggaacca--------ctggctggcttacggcttctcccttcagggtctccttctggggaacccaagctaagCAACCT s panTro5.chr2A 3513059 404 + 111504155 TAGTATACATACTACAGATCAAATTCCAAATCCTATTAGAAGAGAACACAATATCAACAAAAAGTTGACCTTACCCTGAGAGATGATGCAGCCACAGGT-GATACGATATA-AAGGGGGTTTCTCTTGGGCTTCTTCCT-------------------CTTCTTAGCACACTCAA-----A-----------GCCAGGCAGCTCTGGGTGATGGATTTTTCAATTCCAGCTCCCTTGCCTCCTG----------TCAGAGGCGGAACGCA--GGCTCCAG-GGCCACACGGA------------------------------------------ATCCAGTGGGAGGCCCATCCCCAGGGCCCAGGCCTGAGACGCAcctgtgctcagtttc-gcctcctccccactggttttcccgggagcacttccggaacca--------ctggctggcttacggcttctcccttcagggtctccttctggggaacccaagctaagCAACCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374012 404 + 114371477 TAGTATACATACTACAGATCAAATTCCAAATCCTATTAGAAGAGAACACAATATCAACAAAAAGTTGACCTTACCCTGAGAGATGATGCAGCCACAGGT-GATACGATATA-AAGGGGGTTTCTCTTGGGCTTCTTCCT-------------------CTTCTTAGCACACTCAA-----A-----------GCCAGGCAGCTCTGGGTGATGGATTTTTCAATTCCAGCTCCCTTGCCTCCTG----------TCAGAGGCGGAACGCA--GGCTCCAG-GGCCACACGGA------------------------------------------ATCCAGTGGGAGGCCCATCCCCAGGGCCCAGGCCTGAGACGCAcctgtgctcagtttc-gcctcctccccactggttttcccgggagcacttccggaacca--------ctggctggcttacggcttctcccttcagggtctccttctggggaacccaagctaagCAACCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251507 401 + 637652 TAGTATACATACTACAGATCAAATTCCAAATCCTATTAGAAGAGAACACAATATTAACAAAAAGTTGACCTTACCCTGAGAGATGATGCAGCCACAGGT-GATACAATATA-AAGGGGTTTTCTCTTGGGCTTCTTCC----------------------TCTTAGCACACGCAC-----A-----------GCCAGGCAGCTCTGGGTGATGGATTTTTCaagtctagctcccttgcctcctg----------tcagaggcggaacgca--ggctccag-ggccacacgga------------------------------------------atccagtgggagacccatccccagggcccaggcctgagatgcacctgtgctcagtttc-gcctcctccccactggttttcccgggagcacttccggaacca--------ctggctggcttacggcttctcccttcagggtctccttctggggaacccaagctaagCAACCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046406 413 + 81552678 TAGTGTACATACTACAGATCAAATTCCAAATCCTATTAGAAGAGAACACAATATTAACAAAAAGTTTACCTGACCCGGAGAGGTGATGCAGCCACAGGT-GATACGATATA-AAGGGGGTTTCTCTTGGGCTTCTTCCT-------------------CTTCTTAGCACACTCAT-----A-----------GCCAGGCAGCTCTGGGTGATGGATTTTTCaagtccagctcccttgtcttctgttgggactgctcagaggcggaacgca--ggctccag-ggccacatgca------------------------------------------atccagtgggaggcccatccccagggcccaggcctgagatgcacctgtgctcagtttc-ccctcctccccactggttttcccaggagcacttccagaacca--------ttggctggcttacatcttctcccttca-ggtctccttctggggaacccaacctaagCAACCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3310986 391 + 108979918 TAGTATACATACTACAGATCAAATTCCGAATCCTATTAGAAGAGAACACAATATTAACAATAAGTTTACCTTACCCTGAGAGATGATGCAGCCACATGT-GATATGATATA-AAGGTGGTTTCTCTTGGGCTTCTTCC----------------------TCTTAGCACACTCGT-----A-----------ACCAGGCAGCTCTGGGTGATAGATTTTTCAAGTCCAGCTCCCTTGCCTCCTGTTGAGACAGCTCAGAGGCAGAGCGCA--GGCTCCAA-GGCCACGTGGA------------------------------------------ATCCAGTGGGAGGCCCATTCCCAGGGCCCAGGCCTGAGATGCACCTGTGCTCAGTTTC-CCCTCCTCCCCACTGG-----------------CCAGAACCA--------CTGGCTGGCTTACAGCTTCTCCCTTCAGGGTCTC---CTGGGGAACCCAACCTAAGCAACCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022117 394 - 111193037 TAGTATACATACTACAGATCAAATTCCGAATCCTATTAGAAGAGAACACAATATTAACAATAAGTTTACCTTACCCTGAGAGATGATGCAGCCACATGT-GATATGATATA-AAGGTGGTTTCTCTTGGGCTTCTTCC----------------------TCTTAGCACACTCGT-----A-----------ACCAGGCAGCTCTGGGTGATAGATTTTTCAAGTCCAGCTCCCTTGCCTCCTGTTGAGACAGCTCAGAGGCAGAGCGCA--GGCTCCAA-GGCCACGTGGA------------------------------------------ATCCAGTGGGAGGCCCATTCCCAGGGCCCAGGCCTGAGATGCACCTGTGCTCAGTTTC-CCCTCCTCCCCACTGG-----------------CCAGAACCA--------CTGGCTGGCTTACAGCttctcccttcagggtctccttctggggaacccaacctaagCAACCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415060 394 + 3644372 TAGTATACATACTACAGATCAAATTCCGAATCCTATTAGAAGAGAACACAATATTAACAATAAGTTTACCTTACCCTGAGAGATGATGCAGCCACATGT-GATATGATATA-AAGGTGGTTTCTCTTGGGCTTCTTCC----------------------TCTTAGCACACTCGT-----A-----------ACCAGGCAGCTCTGGGTGATAGATTTTTCaagtccagctcccttgcctcctgttgggacagctcagaggcagagcgca--ggctccaa-ggccacgtgga------------------------------------------atccagtgggaggcccattcccagggcccaggcctgagatgcacctgtgctcagtttc-ccctcctccccACTGG-----------------CCAGAACCA--------CTGGCTGGCTTACAGCttctcccttcagggtctccttctggggaacccaacctaagCAACCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3370249 391 - 10304083 TAGTATACATACTACAGATCAAATTCCAAATCCTATTAGAAGAGAACACAATATTAACAATAAGTTTACCTTACCCTGAGAGATGATGCAGCCACATGT-GATATGATATA-AAGGTGGTTTCTCTTGGGCTTCTTCC----------------------TCTTAGCACACTCGT-----A-----------ACCAGACAGCTCTGGGTGATAGATTTTTCaagtccagctcccttacctcctgttgggacagctcagaggcagagcgca--ggctccag-ggccacgtgga------------------------------------------atccagtaggaggcccattcccagggcccaggcctgagatgcacttgtgctcagtttt-c---cctccccACTGG-----------------CCAGAACCA--------CTGGCTGGCTTACAGCttctcccttcagggtctccttctggggaacccaacctaagCAACCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3459129 391 - 107702431 TAGTATACATACTACAGATCAAATTCCAAATCCTATTAGAAGAGAACACAATATTAACAATAAGTTTACCTTACCGTGAGAGATGATGCAGCCACATGT-GATATGATATA-AAGGTGGTTTCTCTTGGGCTTCTTCC----------------------TCTTAGCACACTCAT-----A-----------ACCAGACAGCTCTGGATGATAGATTTTTCAAGTCCAGCTCCCTTACCTCCTGTTGGGACAGCTCAGAGGCAGAGCACA--GGCTCCAG-GGCCACGTGGA------------------------------------------ATTCAGTGGGAGGCCCATTCCCAGGGCCCAGGCCTGAGATGCACCTGTGCTCAGTTTC-C---CCTCCCCACTGG-----------------CCAGAACCA--------CTGGCTGGCTTACAGCTTCTCCCTTCAGGGTCTCCTTCTGGGGAACCCAACCTAAGCAACCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1003110 390 + 1565135 TAGTATATATACTACAGATCAAATTCCAAATCCTATTAGAAGAGAACGCAATATTAACAATAAGTTTACCTTACCCTGAGAGATGATGCAGCCACATGT-GATATGATATA-AAGGTGGTTTCTCTTGGGCTTCTTCC----------------------TCTTAGCACACTCGT-----A-----------ACCAGACAGCTCCGAGTGATAGATTTTTCaagtccagctcccttgcctcctgttgggacagctcagaggcagagcgca--ggctccag-ggccacgtgga------------------------------------------atccagtgggaggcccattcccagggcccaggcctgagatgcacctgtgctcagttt--c---cctccccactgg-----------------ccagaacca--------ctggctggcttacagcttctcccttcagggtctccttctggggaacccaacctaagCAACCT i manLeu1.NW_012104432v1 C 0 I 346 s colAng1.NW_012118821v1 3367802 394 - 13651311 TAGTATACATACTACAGATCAAATTCCAAATCCTATTAGAAGAGAACACAATATTAACAATAAGTTTACCTTACCCTGAGAGATGATGCAGCCACATGT-GATATGATATA-AAGGTGGTTTCTCTTGGGCTTCTTCC----------------------TCTTAGCACACTCGT-----A-----------ACCAGGCAGCTCTGGGTGATAGATTTTTCaagtccagctcccttgcctcctgttgggacagctcagaggcagagcgca--ggctccag-ggccacgtgga------------------------------------------atccagtgggaggcctattcccagggcccaggcctgagatgcacctgtgctcagtttc-ccctcctccccACTGG-----------------CCAGAACCA--------CTGGCTGGCTTACAGCttctcccttcagggtctccttctggggaacccaacctaagCAACCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454190 408 - 108792865 TAGTATACATATTACAGGTTGATTTCCAAATCCTGTTAGAAGAGAATGTAA-AGTAACAA-ATATTTCCCTTACCCTGAGAGATGAGGCAGCCACGTGT-GGTACAATA-C-AAGGTAGTTTCTCTTGGGCATCTTCCT-------------------CTTTTTAGCACACTCAC-----A-----------GCCAGGTGGCTCTGGGTGATGGATGTTTCAAGTCCAA-TCCCTTACCTCCTATTGGGACAGCTCAGAGTCAGAACATA--GGCTCCAG-GGCCACGTGGA------------------------------------------ATCCAGTGGGAGGCCCATTCCCAGGGCCCAGGCATGAGACTCACCTGTGCTCTATTTT-TCCTCCTACCCACT-GGTTCCCCAGGAGCAGTTCTAGAACTA--------CTGTCTGGCTTACAGCTTCTCCCTTCCAGGTCTCCTTCTGGGGAACCCAACCTAGG-AACCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3103997 410 - 7082604 TAGTATACATATTACAGATTGATTTCCAAATCCTGTTAGAAGAGAACATAATAGTAACAA-ATACTTCCCTTA-CCTGAGAGATGAGGCAGCCACGTAT-GGTACAATATC-AAGGTAGTTTCTCTTGGGTGTCTTCCT-------------------GTTTTTAGCACACTCAC-----A-----------GCGAGGCGGCTCTGGGCGATGGATTTTTCaagtccag-tcccttgcctcctattgggacagctcagaggcagaacata--ggctccag-ggccaggtgga------------------------------------------atccagtgggaggcccattccca-ggcccaggcctgagacttacctgtgctcagttttcccctcctacccactgggttccccgggagcagttccagaacca--------ctggctggcttacagcttctcccttccgggtctccttctggggaacccaacctagg-aACCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 589763 411 + 5243153 TAGTATACATATTACAGATTGATTTCCAAATCCTGTTAGAAGAGAACATAACAGTAACAG-ATATTTCCCTTGCCCTGAGAGATGAGGCAGCCACGTGT-GGTACAATATC-AAGGTGGTTTCTCTTGGGCGTCTTCCT-------------------CTTTTTAGCACACTCAC-----A-----------GCCAGGTGGCCCTGGGTGATGGATTTTTCAACTCCAG-TCCCTTGCCTCCTATTGGGACAGCTCAGAGGCAGAACATA--GGCTCCAG-GGCCACATGGA------------------------------------------ATCCAGTGGGAGGCCCATTCCCAGGGCCCGGGCCTGAGACTCACCTGTGCTCAGTTTC-CCCTCCTACCCACTGGGTTCCCTGGGAGCAGTTCCAGAACCA--------CTGGCTGGCTTACAGCTTCTCCCTTCCGGGTCTCCTTCTGGGGAAGCCAACCTAGG-AACCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924452 411 - 1938448 AAGTATACATATTACAGATTGATTTCCAAATCCTGTTAGAAGAGAACATAATAGTAACAA-ATATTTCCCTTACCCTGAGAGATGAGGCAGCCACGTGT-GGTACAATATC-CAGGTGGTTTCTCTTGGGCAACTTCCT-------------------CTTTTTAGCACACTCAT-----A-----------GCCAGGCGGCTCTGGGCAGTGGATTTTTCAAGTCCAA-TCCCTTGCCTCCTATTGGGACAGCTCAGAGGCAGAACATA--GGCTCCAG-GGCCACTTAGA------------------------------------------ATCCAGTGGGAGGCCCATTCCCAGGGCCCGGGCCTGAGACTCACCTGTGCTCAGTTTC-CCCTCCTACCCACTGGGTTCCCCAGGAGCAGTTCCAGAACTA--------CTGGCTGGCTTATAGCTTCTCCCTTCCGGGTCTCCTTCTGGGGAACCCAACCTAGG-AACCT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2536974 318 + 5252280 TGGTATGTGTGCCACGGGCCAGACTCTCA---------------------------------------------CCTGGGAGG---GGCAGCCACAC-------------------TGGACCCTGTCGTGCTTTCTCCT-------------------CCCTCTGCCCCACACATCACAGA-----------GCCAGGCAGCCCTGGA-GGGGGACTTCGCACTCCCGGACGCCTTG----------GGACAGTTCAGAGGCAGAACTTA--GGCCCCAGCAGCTGCAGTCA------------------------------------------GTACA---GGGGCCCCATCCACTGGAT--AGCCCTG------------GCCCTGCTTC-CC--ACTGCCCACTCA---CCCAAGAAGCACTTCTATAATCA--------GTCACCTGCTCACACGTTCTCCCCTCAGGGTCTC---CTGGGGAACAC-ACCTAAGCCACTT i otoGar3.GL873658 I 22 C 0 s canFam3.chr17 2038016 473 + 64289059 TCCTGTATTTACTGTATGTCAAATTCCAAATCCTAT--GGAAGGAGCATGATATTAATAAAAAGATTCCCTTGTTCTGAGGGACAATGCAGCCACATCCAGATACTGTGTATAAGTTCATTTCAGGTGCAGCCCTTCTTCAGAGAACTGCTCTCATTCCCCCTCAGCACACTGAT-----GGAGTGTTCCCTGCCAGGCGAGCCTGGAGGGTGGAGTTTCCAAGTCCAGCTCCCTTACCTTCTGTGGGGGCACCTCTGACGAAGAGAGCCTTTGCTGCAG-AGCcacacacacgcatgtatgcacacgcacacacacacacatacacaTTGCCGAATCAGGCAAAGCTCCATCCTAGGGACCTGGACCTGAGACGCACCTTTGCTCACTTTC-C-------TTCGCTGG----------------TCCTGCATCAGCCACATTCTTACTTGCTTGCAGAGCCTCCTTTGAGGGTCTCCTTCTAGGTACCCCAACATAAGCGACCT i canFam3.chr17 C 0 C 0 e micMur3.chr8 2646947 465 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 958252 503 + 1238772 I e dasNov3.JH580157 567303 130 + 2232271 I a score=147716.000000 s hg38.chr2_KI270769v1_alt 52869 16 + 120616 ACCATTCGAGCTTGCT s panTro5.chr2A 3513463 16 + 111504155 ACCATTCGAGCTTGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374416 16 + 114371477 ACCATTCGAGCTTGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251908 16 + 637652 ACCATTCGAGCTTGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046819 14 + 81552678 ACCATTCGAGCTTG-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311377 15 + 108979918 -TCATTCGAGCTTGCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022511 15 - 111193037 -TCATTCGAGCTTGCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415454 15 + 3644372 -TCATTCGAGCTTGCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3370640 15 - 10304083 -TCATTCGAGCTTGCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3459520 15 - 107702431 -TCATTCGAGCTTGCT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3368196 15 - 13651311 -TCATTTGAGCTTGCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454598 16 - 108792865 TCCATTCGAGCTTGCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104407 16 - 7082604 TGCATTCGAGCTTGCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590174 16 + 5243153 TCCATTCGAGCTTGCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924863 16 - 1938448 TCCATTCGAGCTTGCT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2537292 15 + 5252280 -TCTACTGAGCTTGCC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2038489 16 + 64289059 TTTATTTGAGCTTGTC i canFam3.chr17 C 0 C 0 e micMur3.chr8 2646947 465 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 958252 503 + 1238772 I e dasNov3.JH580157 567303 130 + 2232271 I e manLeu1.NW_012104432v1 1003500 346 + 1565135 I a score=42445.000000 s hg38.chr2_KI270769v1_alt 52885 5 + 120616 AAACT s panTro5.chr2A 3513479 5 + 111504155 AAACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374432 5 + 114371477 AAACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251924 5 + 637652 AAACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046833 2 + 81552678 ---CT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311392 5 + 108979918 AAACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022526 5 - 111193037 AAACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415469 5 + 3644372 AAACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3370655 5 - 10304083 AAACT i cerAty1.NW_012000820v1 C 0 I 305 s chlSab2.chr14 3459535 5 - 107702431 AAACT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3368211 5 - 13651311 AAACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454614 5 - 108792865 AAACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104423 5 - 7082604 AAACT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590190 5 + 5243153 AAACT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924879 5 - 1938448 AAACT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2537307 5 + 5252280 ATGAG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2038505 5 + 64289059 ATACC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 567433 5 + 2232271 AAGAT i dasNov3.JH580157 I 130 C 0 e micMur3.chr8 2646947 465 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 958252 503 + 1238772 I e manLeu1.NW_012104432v1 1003500 346 + 1565135 I a score=25347.000000 s hg38.chr2_KI270769v1_alt 52890 2 + 120616 AA s panTro5.chr2A 3513484 2 + 111504155 AA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374437 2 + 114371477 AA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251929 2 + 637652 AA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046835 2 + 81552678 AA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311397 2 + 108979918 AA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022531 2 - 111193037 AA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415474 2 + 3644372 AA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3370965 2 - 10304083 aa i cerAty1.NW_012000820v1 I 305 C 0 s chlSab2.chr14 3459540 2 - 107702431 AA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1003846 2 + 1565135 aa i manLeu1.NW_012104432v1 I 346 C 0 s colAng1.NW_012118821v1 3368216 2 - 13651311 AA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454619 2 - 108792865 CA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104428 2 - 7082604 AA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590195 2 + 5243153 AA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924884 2 - 1938448 AA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2537312 2 + 5252280 GA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2038510 2 + 64289059 AA i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 567438 2 + 2232271 AA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2646947 465 - 159902609 I e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 958252 503 + 1238772 I a score=103624.000000 s hg38.chr2_KI270769v1_alt 52892 7 + 120616 AGAAATA s panTro5.chr2A 3513486 7 + 111504155 AGAAATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374439 7 + 114371477 AGAAATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251931 7 + 637652 AGACATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046837 7 + 81552678 AGAAATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311399 7 + 108979918 AGAAATA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022533 7 - 111193037 AGAAATA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415476 7 + 3644372 AGAAATA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3370967 7 - 10304083 agaaaTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3459542 7 - 107702431 AGAAATG i chlSab2.chr14 C 0 I 305 s manLeu1.NW_012104432v1 1003848 7 + 1565135 aaaaaTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368218 7 - 13651311 AGAAGTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454621 7 - 108792865 AGAAATA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104430 7 - 7082604 AGAAATA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590197 7 + 5243153 AGAAATA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924886 7 - 1938448 AGAAATA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2647412 7 - 159902609 AGAAATA i micMur3.chr8 I 465 C 0 s otoGar3.GL873658 2537314 7 + 5252280 AGAAATA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2038513 7 + 64289059 AAAAATA i canFam3.chr17 I 1 I 1 s dasNov3.JH580157 567440 7 + 2232271 AAAAATA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 958252 503 + 1238772 I a score=305445.000000 s hg38.chr2_KI270769v1_alt 52899 24 + 120616 TTAAAGAATATCTGAGCATTCTGG s panTro5.chr2A 3513493 24 + 111504155 TGAAAGAATATCTGAGCATTCTGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374446 24 + 114371477 TGAAAGAATATCTGAGCATTCTGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251938 24 + 637652 TTAAAGAATATCTGAGCATTCTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046844 24 + 81552678 TTAAAGAATATCTGAGCATTCTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311406 24 + 108979918 TTAAAGAATATCTGAGCATTCAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022540 24 - 111193037 TTAAAGAATATCTGAGCATTCAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415483 24 + 3644372 TTAAAGAATATCTGAGCATTCAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3370974 24 - 10304083 TTAAAGAATATCTGAGCATTCAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3459854 24 - 107702431 TTAAAGAATATCTGAGCATTCAGG i chlSab2.chr14 I 305 C 0 s manLeu1.NW_012104432v1 1003855 24 + 1565135 TTAAAGAATATCTGAGCATTCAGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368225 24 - 13651311 TTAAAGAGTATCTGAGCATTCAGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454628 24 - 108792865 TTAGAGAATACCTGAGCATTCTGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104437 24 - 7082604 TTAGAGAATACCTGAGCATTCTAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590204 24 + 5243153 TTAGAGAATACCTGAGCATTCTGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924893 24 - 1938448 TTAGAGAATACCTGAGCATCCTGG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2647419 24 - 159902609 TTAAGGGATACCTGAGCATTCTCT i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2537321 24 + 5252280 TTAAAGAATAGCTGAGTGTTCCCC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2038521 24 + 64289059 TTTAAAAACCCATGAGTGTTCTGT i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 567447 23 + 2232271 -AAAAGAATACATGAGTATTCTAT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91415283 1115 - 120129022 I e proCoq1.NW_012151163v1 958252 503 + 1238772 I a score=346093.000000 s hg38.chr2_KI270769v1_alt 52923 28 + 120616 -----TTTTTCTTTTATTGGAGGAGGGGTTGGC- s panTro5.chr2A 3513517 28 + 111504155 -----TTTTTCTTTTATTGGAGGAGGGGTTGGT- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374470 28 + 114371477 -----TTTTTCTTTTATTGGAGGAGGGGTTGGT- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251962 28 + 637652 -----TTTTTCTTTTATTGGAGGAGGGGTTGGT- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046868 28 + 81552678 -----TTTTTCTTTTATTGGAGGAAGGGTTGGT- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311430 28 + 108979918 -----TTTTTCTTTTATTGGAGGAGGGGTTGGT- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022564 28 - 111193037 -----TTTTTCTTTTATTGGAGGAGGGGTTGGT- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415507 28 + 3644372 -----TTTTTCTTTTATTGGAGGAGGGGTTGGT- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3370998 28 - 10304083 -----TTTTTCTTTTATTGGAGGAGGGGTTGGT- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3459878 28 - 107702431 -----TTTTTCTTTTATTGGAGGAGGGGTTGGT- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1003879 28 + 1565135 -----TTTTTCTTTTATTGGAGGAGGGGTTGGT- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368249 28 - 13651311 -----TTTTTCTTTTATTGGAGGAGGGGTTGGT- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454652 28 - 108792865 -----TTTCTCTTTTATTGGAGGAGGGGTTGGT- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104461 28 - 7082604 -----TTTCTCTTTTATTGAAGGAGGGGTTGGT- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590228 28 + 5243153 -----TTTCTCTTTTATTGGAGGAGGGGTTGGT- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924917 28 - 1938448 -----TTTCTCTTTTATTGGAGGAGGAGTTGGT- i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2647443 24 - 159902609 -----TTTTTATTTTATTGTAGGA-GGGCT---- i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 958755 25 + 1238772 -----TTTTTATTTTGTTGGAGGAGGGGAT---- i proCoq1.NW_012151163v1 I 503 C 0 s otoGar3.GL873658 2537345 20 + 5252280 ----------ATTTTTTTTTGGAAGAGGCT---- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2038545 25 + 64289059 -----GGTTTCTTTTATTGGAGGAGGAAGC---- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 567470 34 + 2232271 CTTGTTTTCTTTTTTTTTTTTGGAAGGGACAGAC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91415283 1115 - 120129022 I a score=794745.000000 s hg38.chr2_KI270769v1_alt 52951 62 + 120616 GGTCTCTACTGTTTCATTCATTTTGGGATCATTTCTAAATGATTGCAGTGTAGCTTTGGAAA s panTro5.chr2A 3513545 62 + 111504155 GGTCTCTACTGTTTCATTCATTTTAGGATCGTTTCTAAATGATTGCAGTGTAGCTTTGGAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374498 62 + 114371477 GGTCTCTACTGTTTCATTCATTTTAGGATCGTTTCTAAATGATTGCAGTGTAGCTTTGGAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 251990 62 + 637652 GGTCTCTACTGTTTCATTCGTTTTGGGATCGTTTCTAAATGATTGCAGTGTAGCTTTGGAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046896 62 + 81552678 GGTCTCTACTGTTTCATTCATTTTGGGATCGTTTCTAAATGATTGCAGTGTAGCTTTGGAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311458 62 + 108979918 GGTCTCTACTGTTTCATTCATTTTGGGATCGTTTCTAAATGATTGCAGTGTAGCTATGGAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022592 62 - 111193037 GGTCTCTACTGTTTCATTCATTTTGGGATCGTTTCTAAATGATTGCAGTGTAGCTATGGAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415535 62 + 3644372 GGTCTCTACTGTTTCATTCATTTTGGGATCATTTCTAAATGATTGCAGTGTAGCTATGGAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3371026 61 - 10304083 GGTCTCTACTGTTT-ATTCATTTTGGGATCGTTTCTAAATGATTGCAGTGTAGCTATGGAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3459906 62 - 107702431 GGTCTCTACTGTTTCATTCATTTTGGGATCGTTTCTAAATGATTGCAGTGTAGCTATGGAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1003907 61 + 1565135 GGTCTCTACTGTTT-ATTCATTTTGGGATCGTTTCTAAATGATTGCAGTGTAGCTATGGAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368277 62 - 13651311 GGTCTCTACTGTTTCATTCATTTTGGGATCGTTTCTAAAGGATTGCAGTGTAGCTATGGAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454680 61 - 108792865 GGTCTCTAT-GTTTCATTCATTTGGGAGTGGTTTGTTAATGATCACAGTTTAGCTATGGAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104489 61 - 7082604 GGTCTCTAC-GTTTCATTCATTTGGGAGTGGTTTGTAAATGATCACAGTTTAGCTATGGAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590256 61 + 5243153 GGTCTCTAC-ATTTCACTCATTTGGGAGTGGTTTGTAAATGATCACAGTTTAGCTATGGAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1924945 61 - 1938448 GGTCTCTAC-ATTTCATTCATTTGGGAGTGGTTTGTAAATGATCACAGTTTAGCTATGGAAA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2647467 62 - 159902609 GGTCTCTGCTGTTTTATTCGTTTTGTGATAGTTTCTACGTGGGGGCAGTGTAGCTGTGGGAA i micMur3.chr8 C 0 I 1 s proCoq1.NW_012151163v1 958780 62 + 1238772 GGTCTCTACTGTCTCATTCGCTTTGTGATAGTTTCTACATGACTGCAGTGTAGCTATGGAAA i proCoq1.NW_012151163v1 C 0 I 236 s otoGar3.GL873658 2537365 61 + 5252280 GGTCTCTACTGCCTTACTCGTTTTGTGATAGTTTCCACATGATGGTGGACT-GCTATGGAGG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91416398 59 - 120129022 GGTATCTGCTACTGAATTTATTT-GTGAGAACCTCT--GTGGTTGCTGCAGAGCTGTGGCAA i mm10.chr12 I 1115 C 0 s canFam3.chr17 2038570 29 + 64289059 AGTCGCTA---------------------------------GTTGGAGCACAGCTATGGAAA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 567504 62 + 2232271 TGTATGTACTATTTCATTCATTTTATGTTAGTTTATACGTGATTGAATTATAGCTATAGAAA i dasNov3.JH580157 C 0 C 0 a score=335572.000000 s hg38.chr2_KI270769v1_alt 53013 25 + 120616 TTGTGGTGTCATCCACCTGTCTCCT s panTro5.chr2A 3513607 25 + 111504155 TTGTGGTGTCATCCACCTGTCTCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374560 25 + 114371477 TTGTGGTGTCATCCACCTGTCTCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 252052 25 + 637652 TTGTGGTGTCATCCACCTGTCTCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046958 25 + 81552678 TTGTGGTGTCATCCACCTGTCTCCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311520 25 + 108979918 TCGTGGTGTCATCCACCTGTCTCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022654 25 - 111193037 TCGTGGTGTCATCCACCTGTCTCCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415597 25 + 3644372 TCGTGGTGTCATCCACCTGTCTCCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3371087 25 - 10304083 TCGTGGTGTCATCCACCTGTCTCCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3459968 25 - 107702431 TCGTGGTGTCATCCACCTGTCTCCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1003968 25 + 1565135 TCGTGGTGTCATCCACCTGTCTCCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368339 25 - 13651311 TCATGGTGTCGTCCACCTGTCTCCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454741 25 - 108792865 GCGTGGTGACAACCACCTGTCTCCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104550 25 - 7082604 GCGTGGTGACAACCACCTGTCTCCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590317 25 + 5243153 GTGTGGTGACAGCCACCTGTCTCCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1925006 25 - 1938448 GCGTGGTGACAACCACCTGTCTCCT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2647530 25 - 159902609 TAGTGGTCACATCCACCTGTCTCCT i micMur3.chr8 I 1 I 213 s otoGar3.GL873658 2537426 25 + 5252280 TGGTAGTCATTTCCATCTATCTCTC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91416457 22 - 120129022 TAGTGGTAACATCTG---GTCTCCC i mm10.chr12 C 0 C 0 s canFam3.chr17 2038599 24 + 64289059 CAGTAGTGACATC-ACCTTTCTCCT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 567566 25 + 2232271 TATTAATGATATCTACCTGTCTCCT i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 958842 236 + 1238772 I a score=1672465.000000 s hg38.chr2_KI270769v1_alt 53038 129 + 120616 CTGATAATTGTCGAG-ACATACATACATAGAGCTCCATAGAGAAAACCAGCATGTATTTTATAGTTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGCG- s panTro5.chr2A 3513632 129 + 111504155 CTGATAATTGTCGAG-ACATACATAGATAGAGCTCCATAGAGAAAACCAGCATGTATTTTATAGTTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGCG- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374585 129 + 114371477 CTGATAATTGTCGAG-ACATACATAGATAGAGCTCCATAGAGAAAACCAGCATGTATTTTATAGTTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGTG- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 252077 129 + 637652 CTGATAATCGTCGAG-ACATACATACATAGAGCTCCATAGAGAAAACCAGCATGTATTTTATAGTTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGCG- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3046983 129 + 81552678 CTGATAATTGTCTAG-ACATACATACATAGAGCTCCATAGAAAAAACCAGCACGTATTTTATAGCTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGCG- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311545 129 + 108979918 CTGATAATTGTCTAG-ACATACATAGATAGAGCTCCACAGAGAAAACCAGCATGTATTTTATAGCTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGCG- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022679 129 - 111193037 CTGATAATTGTCTAG-ACATACATAGATAGAGCTCCACAGAGAAAACCAGCATGTATTTTATAGCTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGCG- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415622 129 + 3644372 CTGATAATTGTCTAG-ACATACATAGATAGAGCTCCACAGAGAAAACCAGCATGTATTTTATAGCTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGCG- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3371112 129 - 10304083 CTGATAATTGTCTAG-ACATACATAGATAGAGCTCCACAGAGAAAACCAGCATGTATTTTATAGCTGACACGGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGCG- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3459993 129 - 107702431 CTGATAATTGTCTAG-ACATACATAGATAGAGCTCCACAGAGAAAACTAGCATGTATTTTATAGCTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGCG- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1003993 129 + 1565135 CTGATAATTGTCTAG-ACATACATAGATAGAGCTCCACAGAGAAAACCAGCATGTATTTTATAGCTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGTG- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368364 129 - 13651311 CTGATAATTGTCTAG-ACATACATAGATAGAGCTCCACAGAGAAAACCAGCATGTATTTTATAGCTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGCG- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454766 129 - 108792865 CTGATCATTGTCTAG-ACATGCATACATAGAGCTCCACAGAGAAAACCAGCATGTATTTTATAGCTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGTG- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104575 129 - 7082604 CTGATCATTGTCTAG-ACATACACAGATAGAGCTCCACAGAGAAAACCAGCATGTATTTTATAGCTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGTG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590342 129 + 5243153 CTGATCATTGTCTAG-ACATACATAGATAGAGCTCCACAGAGAAAACCAGCATGTATTTTATAGCTGACACAGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGCG- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1925031 129 - 1938448 CTGATCATTGTCTAG-ACATACATAGATAGAGCTCCACAGAGAAAACCAGCATGTATTTTATAGCTGACACCGTTAAATACTTCA-CAAGAAAT------AAAGGGA--T-C-TGTCATCACTTCTGCTGGGACATCTGCG- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2537451 126 + 5252280 TGGATAAACTTATAG-ACATACGC----AGAACTTTATAGAGAAATGTAGCATTTATCTTATGGCTGTTACCACGGGACGTCTCACCAAGAAAT------AAAGGGA--TCC-TGTCATCACTTCTG-TGGGACCTCTGCA- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91416479 114 - 120129022 TTGGTAATTGGCTAG-ATATGTA-AGATATGACTTAGCAGAGAAAACCAGCTTGTATTCTACAGCTAA----------------A-CCAAAAAT------CAAAGGACTT-C-TGTTCTTGCTTCCAATGCAACACCTGtg- i mm10.chr12 C 0 I 366 s canFam3.chr17 2038623 113 + 64289059 TTGATAGTTGTCTAGAACATATGTATTTATGGCTT-------------------TACTTCATAACTGACACCTTTGCATACCTTAGCAACAAAT------GAAGAGC--TTC-TGTCCTCCCTTCCTCTGGGACATCAGCA- i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 567591 137 + 2232271 CTTATAATTGTCTAG-ACATATTTATGTACAGTTTTACAGAGACAACTCGCATAT-TTTTAGAGCTGACACCATTGAATTCATTACCAAGGGATGCTTGCAAAATAA--T-CTTATCACCACTTCCTCTAGGACATTTGCAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2647555 213 - 159902609 I e proCoq1.NW_012151163v1 958842 236 + 1238772 I a score=383832.000000 s hg38.chr2_KI270769v1_alt 53167 29 + 120616 ACGCCTCCTTCAAGTGTGCCAAGTATGAA s panTro5.chr2A 3513761 29 + 111504155 ACGCCTCCTTCAAGTGTGCCAAGTATGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374714 29 + 114371477 ACGCCTCCTTCAAGTGTGCCAAGTATGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 252206 29 + 637652 ACGCCTCCTTCAAGTGTGCCAAGTATGAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3047112 29 + 81552678 ATGCCTCCTTCAAGTGTGCCAAGTATGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311674 29 + 108979918 ACGCCTTCTTCAAGTGTGCCAAGTATGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022808 29 - 111193037 ACGCCTTCTTCAAGTGTGCCAAGTATGAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415751 29 + 3644372 ACGCCTTCTTCAAGTGTGCCAAGTATGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3371241 29 - 10304083 ACGCCTTCTTCAAGTGTGCCAAGTATGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3460122 29 - 107702431 ACGCCTTCTTCAAGTGTGCCAAGTATGAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1004122 29 + 1565135 ACGCCTTCTTCAAGTGTGCCAAGTATGAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368493 29 - 13651311 ACGCCTCCTTCAAGTGTGCCAAGTATGAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454895 29 - 108792865 ACGCCTCCTTCAAGTGTGCCAAGTATGAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104704 29 - 7082604 ACGCCTCCTTCAAGTGTGCCAAGTATGAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590471 29 + 5243153 ACGCCTCCTTCAAGTGTGCCAAGTATGAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1925160 29 - 1938448 ACGCCTCCTTCAAGTGTGCCAAGTATGAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2537577 29 + 5252280 GATCCTCCTTAGAGAATGCCAGGTGTGAA i otoGar3.GL873658 C 0 I 444 s mm10.chr12 91416959 27 - 120129022 ATGCTTCCTTCCTCTGGAC--AGTCAGAA i mm10.chr12 I 366 C 0 s canFam3.chr17 2038737 29 + 64289059 TTCCCTCCTTCAGGTGTGTTAAGTATGAA i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 567728 29 + 2232271 GTGCCTCCTTAAAATGCATTAGGTATGAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2647555 213 - 159902609 I e proCoq1.NW_012151163v1 958842 236 + 1238772 I a score=12829.000000 s hg38.chr2_KI270769v1_alt 53196 2 + 120616 TG- s panTro5.chr2A 3513790 2 + 111504155 TG- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374743 2 + 114371477 TG- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 252235 2 + 637652 TG- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3047141 2 + 81552678 TG- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311703 2 + 108979918 TG- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022837 2 - 111193037 TG- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415780 2 + 3644372 TG- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3371270 2 - 10304083 TG- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3460151 2 - 107702431 TG- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1004151 2 + 1565135 TG- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368522 2 - 13651311 TG- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454924 2 - 108792865 TG- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104733 2 - 7082604 TG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590500 2 + 5243153 TG- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1925189 2 - 1938448 TG- i aotNan1.NW_018507213v1 C 0 C 0 s mm10.chr12 91416986 1 - 120129022 -A- i mm10.chr12 C 0 I 1 s canFam3.chr17 2038766 2 + 64289059 AG- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 567757 2 + 2232271 -AA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2647555 213 - 159902609 I e proCoq1.NW_012151163v1 958842 236 + 1238772 I e otoGar3.GL873658 2537606 444 + 5252280 I a score=575958.000000 s hg38.chr2_KI270769v1_alt 53198 47 + 120616 CGTGCTCAGTTATGGCAAACAAACTCACTCAGCACTGATTG-GATTCC s panTro5.chr2A 3513792 47 + 111504155 CGTGCTCAGTTATGGCAAACAAACTCACTCAGCACTGATTG-GATTCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374745 47 + 114371477 CGTGCTCAGTTATGGCAAACAAACTCACTCAGCACTGATTG-GATTCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 252237 47 + 637652 CGTGCTCAGTTATGGCAAACAAACTCACTCAGCACTGATTG-GATTCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3047143 47 + 81552678 CATGCTCAGTTATGGCAAACAAACTCACTCAGCACTGATTG-GATTCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311705 47 + 108979918 CGTGCTCAGTTATGGCAAACAAACTCACTCAGCGCTGATTG-GATTCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022839 47 - 111193037 CGTGCTCAGTTATGGCAAACAAACTCACTCAGCGCTGATTG-GATTCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415782 47 + 3644372 CGTGCTCAGTTATGGCAAACAAACTCACTCAGCGCTGATTG-GATTCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3371272 47 - 10304083 CGTGCTCAGTTATGGCAAACAAACTCACTCAGCGCTGATTG-GATTCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3460153 46 - 107702431 CGTGCTCAGTTAT-GCAAACAAACTCACTCAGCGCTGATTG-GATTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1004153 47 + 1565135 CGTGCTCAGTTATGGCAAACAAACTCACTCAGCGCTGATTG-GATTCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368524 47 - 13651311 CGTGCTCAGTTATGGCAAACAAACTCACTCAGCACTGATTG-GATTCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454926 47 - 108792865 TGTGCTCAGTTATGGCAAACAGACTCACTCAGCGCTGATTG-GATTCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104735 46 - 7082604 TGCGCTCAG-TATGGCAAACAAACTCACTCAGCGCTGATTG-GATTCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590502 47 + 5243153 TGTGCTCAGTTATGGCAAACAAACTCACTCAGCGCTGATTG-GATTCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1925191 47 - 1938448 TGCGCTCAGTTATGGCAAACAAACTCACTCGGCGCTGATTG-GATTCC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2538050 47 + 5252280 CACGCGTGGTTACTGCACACAGCCGGCCTCAGCTCTGGTTT-CATCCT i otoGar3.GL873658 I 444 C 0 s mm10.chr12 91416988 48 - 120129022 CACACACATCCATAGCAAGCTCACTAATTTACCTGTGGTTTCTACTCT i mm10.chr12 I 1 C 0 s canFam3.chr17 2038768 39 + 64289059 TGTGCTGAGTTATAGCATACTAACTC------CACT--TTG-ACTTCC i canFam3.chr17 C 0 I 5 s dasNov3.JH580157 567759 48 + 2232271 CATACTTAATTATAGCAAACAGATTAACTCAACTTTGATTTTGATTCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2647555 213 - 159902609 I e proCoq1.NW_012151163v1 958842 236 + 1238772 I a score=2344547.000000 s hg38.chr2_KI270769v1_alt 53245 118 + 120616 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGATAGACTGCACAAGGTGAAGACTGTCTGCAGCAAGGTA s panTro5.chr2A 3513839 118 + 111504155 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGATAGACTGCACAAGGTGAAGACTGTCTGCAGCAAGGTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374792 118 + 114371477 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGATAGACTGCACAAGGTGAAGACTGTCTGCAGCAAGGTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 252284 118 + 637652 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGATAGACTGCACAAGGTGAAGACTGTCTGCAGCAAGGTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3047190 118 + 81552678 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGATAGACTGCACAGGGTGAAGACTGTCTGCAGCAAGGTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311752 118 + 108979918 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGATAGACTGCACAGGGTGAAGACCGTCTGCAGCAAGGTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5022886 118 - 111193037 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGATAGACTGCACAGGGTGAAGACCGTCTGCAGCAAGGTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415829 118 + 3644372 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGATAGACTGCACAGGGTGAAGACCGTCTGCAGCAAGGTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3371319 118 - 10304083 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGATAGACTGCACAGGGTGAAGACCGTCTGCAGCAAGGTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3460199 118 - 107702431 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGATAGACTGCACAGGGTGAAGACCGTCTGCAGCAAGGTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1004200 118 + 1565135 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGATAGACTGCACAGGGTGAAGACCGTCTGCAGCAAGGTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368571 118 - 13651311 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGATAGACTGCACAGGGTGAAGACCGTCTGCAGCAAGGTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3454973 118 - 108792865 AGGCTCCATGGTCCCCTTCTCCATGCGCATCCTGCATGCAGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGACAGACTGCACAGGGTCAAGACTGTCTGCAGCAAGGTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104781 118 - 7082604 AGGCTCCATGGTCCCCTTCTCCATGCGCATCCTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCGCAGGAGTCGCTGGACAGACTGCACAGGGTCAAGACTGTCTGCAGCAAGGTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590549 118 + 5243153 AGGCTCCATGGTCCCCTTCTCCATGCGCATCCTGCACGCGGAGCTTCAGCAGTACCTGGGGAACCCACAGGAGTCGCTGGACAGACTGCACAGGGTCAAGACTGTCTGCAGCAAGGTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1925238 118 - 1938448 AGGCTCCATGGTCCCCTTCTCCATGCGCATCCTGCACGCGGAGCTGCAGCAGTACCTGGGGAACCCGCAGGAGTCGCTGGACAGACTGCACAGGGTCAAGACTGTCTGCAGCAAGGTA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2647768 118 - 159902609 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCTGGGGAATCCGCAGGAGTCGCTGGACAGGCTGCACAGGGTGAAGACCGTCTGCAGCAAGGTA i micMur3.chr8 I 213 I 1000 s proCoq1.NW_012151163v1 959078 118 + 1238772 AGGCTCTATGGTCCCCTTCTCGATGCGCATCTTACACGCGGAACTTCAGCAGTATCTGGGGAATCCGCAGGAGTCGCTGGACAGACTGCACAGGGTGAAGACCGTCTGCAGCAAGGTA i proCoq1.NW_012151163v1 I 236 I 733 s otoGar3.GL873658 2538097 118 + 5252280 AGGCTCCATGGTCCCCTTCTCGATGCGCATCTTACACGCAGAGCTGCAGCAGTACCTGGGGAACCCACAAGAGTCGTTGGACCGGCTGCACAGGGTGAAGACCGTCTGCAGCAAGGTA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91417036 118 - 120129022 AGGCTCCATGGTCCCCTTTTCGATGCGTATTCTGCATGCAGAACTGCAGCAGTATCTGGGGAACCCACAGGAGTCCCTGGACCGATTACACAGGGTCAAGACCGTCTGCAGCAAGGTA i mm10.chr12 C 0 C 0 s canFam3.chr17 2038812 118 + 64289059 AGGCTCCATGGTCCCATTTTCAATGCGGATCTTACATGCAGAGCTTCAGCAATACCTGGGGAATCCACAGGAGTCCTTGGATCGACTGCACAAAGTGAAGGCCGTCTGCAGCAAGGTA i canFam3.chr17 I 5 I 13 s dasNov3.JH580157 567807 118 + 2232271 AGGCTCAATGGTTCCCTTTTCAATGCGAATCTTACATGCAGAACTTGAGCAGTATCTGGGGAATCCCCAGGAGTCACTTGATAGACTACACAGAATGAAAACCATCTGCATCAAGGTA i dasNov3.JH580157 C 0 C 0 a score=250608.000000 s hg38.chr2_KI270769v1_alt 53363 28 + 120616 --GGTGGC----GC----------------TGTCAT------------TCTTCCCTGCCACG s panTro5.chr2A 3513957 28 + 111504155 --GGTGGC----GC----------------TGTCAT------------TCTTCCCTGCCACG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374910 28 + 114371477 --GGTGGC----GC----------------TGTCAT------------TCTTCCCTGCCACG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 252402 28 + 637652 --GGTGGC----GC----------------TGTCAT------------TTTTCCCTGCCACG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3047308 28 + 81552678 --GGTGGC----GC----------------TGTCAT------------TCTTCCCTGCCACG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311870 28 + 108979918 --GGTGGC----GC----------------TGTCAT------------TTTTCCCCGCCACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023004 28 - 111193037 --GGTGGC----GC----------------TGTCAT------------TTTTCCCCGCCACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415947 28 + 3644372 --GGTGGC----GC----------------TGTCAT------------TTTTCCCCGCCACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3371437 28 - 10304083 --GGTGGC----GC----------------TGTCAT------------TTTTCCCCGCCACG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3460317 28 - 107702431 --GGTGGC----GC----------------TGTCAT------------TTTTCCCCGCCACG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1004318 28 + 1565135 --GGTGGC----GC----------------TGTCAT------------TTTTCCCCGCCACG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368689 28 - 13651311 --GGTGGC----GC----------------TGTCGT------------TTTTCCCCACCACG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3455091 28 - 108792865 --GGTGAC----GC----------------TGCCAC------------TCTTCCCTGCTGTG i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3104899 28 - 7082604 --GGTGAC----GC----------------TGCCAT------------TCTTCCCTGCCGCG i saiBol1.JH378218 C 0 I 1 s cebCap1.NW_016107454v1 590667 28 + 5243153 --GGTGAC----AC----------------TGCCAT------------TCTTCCCCGCCACG i cebCap1.NW_016107454v1 C 0 I 1 s aotNan1.NW_018507213v1 1925356 28 - 1938448 --GGTGAC----GC----------------TGCCAT------------TCTTCCCCGCCACG i aotNan1.NW_018507213v1 C 0 I 1 s otoGar3.GL873658 2538215 30 + 5252280 --AGTGTCC--TGC----------------CGTCGT------------TCCCCCACCCCCCG i otoGar3.GL873658 C 0 I 18 s mm10.chr12 91417154 29 - 120129022 ------------AC----------------TGTCATGGTGTTCAGTCCTCTTCCTCT----- i mm10.chr12 C 0 C 0 s canFam3.chr17 2038943 31 + 64289059 --GGTAACCTGTTC----------------TGTCCT------------CCTTCCTGAAGAA- i canFam3.chr17 I 13 C 0 s dasNov3.JH580157 567925 46 + 2232271 AAGGTCTC----TCCAGAATAGCCTGTTCTTGTTAT------------CCTTCACACCCACA i dasNov3.JH580157 C 0 I 16 e micMur3.chr8 2647886 1000 - 159902609 I e proCoq1.NW_012151163v1 959196 733 + 1238772 I a score=331117.000000 s hg38.chr2_KI270769v1_alt 53391 33 + 120616 GGGAGAA------------------CATGCCCTCCAC-GCCCTCCCCACAGG s panTro5.chr2A 3513985 33 + 111504155 GGGAGAA------------------CATGTCCTCCAC-GCTCTCCCCACAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374938 33 + 114371477 GGGAGAA------------------CATGCCCTCCAC-GCTCTCCCCACAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 252430 33 + 637652 GGGAGAA------------------AGTGCCCTCCAC-GCCCTCCCCACAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3047336 33 + 81552678 GGGAGAA------------------CGCGCCCTCCAC-GCCGTCCCCACAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311898 33 + 108979918 GGGAGAA------------------CACGCCCTCCAC-GCCCTCCCCACAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023032 33 - 111193037 GGGAGGA------------------CACGCCCTCCAC-GCCCTCCCCACAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3415975 51 + 3644372 GGGAGAAcacgccctccacgccctccacgccctccac-gccctccCCACAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3371465 33 - 10304083 GGGAGAA------------------CACGCCCTCCAC-GCCCTCCCCACAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3460345 33 - 107702431 GGGAGAG------------------CACGTCCTCCAC-GCCCTCCCCACAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1004346 33 + 1565135 GGGAGAA------------------CACGCCCTCCAC-GCCCTCCCCACAGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368717 33 - 13651311 AGAAGAA------------------CACGCCCTCCAC-GCCCTCCCCACAGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3455120 33 - 108792865 GGGAGAA------------------CACACCCTCCAT-GCCCTCCCCACAGG i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3104928 33 - 7082604 AGGAGAA------------------CGCGCCCTCCAT-GCCCTCCCCACAGG i saiBol1.JH378218 I 1 C 0 s cebCap1.NW_016107454v1 590696 33 + 5243153 GGGAGAA------------------CGCGCCCTCCTT-GCCCTCCCCACAGG i cebCap1.NW_016107454v1 I 1 C 0 s aotNan1.NW_018507213v1 1925385 33 - 1938448 GGCATAA------------------CGCGCCCTCCAC-GTCCTCCCCACAGG i aotNan1.NW_018507213v1 I 1 C 0 s mm10.chr12 91417183 30 - 120129022 ----GAG------------------CATTCACACCACGGCATTCTCCACCGG i mm10.chr12 C 0 I 143 s canFam3.chr17 2038974 32 + 64289059 GAGAGGA------------------CAC-CCTTACTC-CCCCTTCCCTCAGG i canFam3.chr17 C 0 I 3 s dasNov3.JH580157 567987 27 + 2232271 GGGAATA------------------CACTATTTCCTT-----TTCTGATA-- i dasNov3.JH580157 I 16 C 0 e micMur3.chr8 2647886 1000 - 159902609 I e proCoq1.NW_012151163v1 959196 733 + 1238772 I e otoGar3.GL873658 2538245 18 + 5252280 I a score=1501555.000000 s hg38.chr2_KI270769v1_alt 53424 156 + 120616 ----ACATGCCCGTGCTGTTCCCTGCCCGTCCTGCCCCATGCACCATCGCTGCTTCTGCCTTCAGAA-GGCTAGGTGACCCGGTTT--GT-GTGGCC-TGGTAGTCGTGGCTCTTGCTGAAATC-TTTTTTAGGGATGGT-AAGAGTTTCTAGCAGAGCTTGAGTCC s panTro5.chr2A 3514018 156 + 111504155 ----ACATGCCCATGCTGTTCCTTGCCCGTCCTGCCCCATGCACCATCGCTGCTTCTGCCTTCAGAA-GGCTAGGTGACCCGGTTT--GT-GTGGCC-TGGTAGTCGTGGCTCTTGCTGAAATC-TTTTTTAGGGATGGT-AAGAGTTTCTAGCAGAGCTTGAGTCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3374971 156 + 114371477 ----ACATGCCCATGCTGTTCCTTGCCCGTCCTGCCCCATGCACCATCGCTGCTTCTGCCTTCAGAA-GGCTAGGTGACCCGGTTT--GT-GTGGCC-TGGTAGTCGTGGCTCTTGCTGAAATC-TTTTTTAGGGATGGT-AAGAGTTTCTAGCAGAGCTTGAGTCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 252463 156 + 637652 ----ACATGCCCGTGC-GTTCCCTGCCCGTCCTGCCCCATGCACCATCGCTGCTTCTGCCTTCAGAA-GGCTAGGTGACCCGGTTT--GT-GTGGCC-TGGTAGTCGTGGCTCTTGCTGAAATCTTTTTTTAGGGATGGT-AAGAGTTTCTAGCAGAGCTTGAGTCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3047369 156 + 81552678 ----ACATGCCCGTGCTGTTCCCTGCCCGTCCTGCCCCATGCACCATTGCTGCTTCTGCCTTCAGAA-GGCTAGGTGACCCGGTTT--GT-GTGGCC-TGGTAGTCGCGGCTCTTGCTGAAATC-TCTTTTAGGGATGGT-AAGAGTTTCTAGCAGAGCTTGAGTCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3311931 154 + 108979918 ----ACGTGCCTGGGGTGTTCCCTGCCCATCCTGCCCCGTGCACCATCGCTGCTTCTGCCTTCAGAA-GGCTAGGTGACCCAGT-T--GT-GTGGCC-TGGTAGTCATGGCTCTTG-TGAAATA-TTTTTTAGGGATGGT-CAGAGTTTCTAGCAGAGCTTAAGTCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023065 154 - 111193037 ----ACGTGCCTGGGCTGTTCCCTGCCCATCCTGCCCCGTGCACCATCGCTGCTTCTGCCTTCAGAA-GGCTAGGTGACCCAGT-T--GT-GTGGCC-TGGTAGTCATGGCTCTTG-TGAAATA-TTTTTTAGGGATGGT-CAGAGTTTCTAGCAGAGCTTAAGTCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416026 154 + 3644372 ----ACGTGCCTGGGGTGTTCCCTGCCCATCCTGCCCCGTGCACCATCGCTGCTTCTGCCTTCAGAA-GGCTAGGTGACCCAGT-T--GT-GTGGCC-TGGTAGTCATGGCTCTTG-TGAAATA-TTTTTTAGGGATGGT-CAGAGTTTCTAGCAGAGCTTAAGTCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3371498 155 - 10304083 ----ACGTGCCTGGGGTGTTCCCTGCCCATCCTGCCCCGTGCACCATCGCTGCTTCTGCCTTCAGAA-GGCTAGGTGACCCAGT-T--GT-GCGGCC-TGGTAGTCATGGCTCTTGCTGAAATA-TTTTTTAGGGATGGT-CAGAGTTTCTAGCAGAGCTGAAGTCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3460378 156 - 107702431 ----ACGTGCCTGGGGTGTTCCCTGCCCATCCTGCCCCGTGCACCATGGCTGCTTCTGCCTTCAGAA-GGTTAGGTGACCCAGTTT--GT-GTGGCC-TGGTAGTCATGGCTCTTGCTGAAATA-TTTTTTAGGGATGGT-AAGAGTTTCTAGCAGAGCTTAAGTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1004379 156 + 1565135 ----ACGTGCCTGGGGTGTTCCCTGCCCATCCTGCCCCCTGCACCATCGCTGCTTCTGCCTTCAGAA-GGCTAGGTGACCCAGTGT--GT-GTGGCC-TGGTAGTCATGGCTCTTGCTGAAATA-TTTTTTAGGGATGGT-CAGAGTTTCTAGCAGAGCTGAAGTCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368750 154 - 13651311 ----AC-TGCCTGTGGTGTTCCCTGCCCATCCTGCCCTGTGCTCCATCGCTGCTTCTGCCTTCAGAA-GGCTAGGTGACTCATT-T--GT-GTGGAC-TGGTAGTCATGGCTCTTGCTGAAATA-TGCTTTAGGGATGGT-AAGAGTTTCCAGCAGAGCTTAAGTCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3455153 156 - 108792865 ----ACGTGCCTGTGCGGTTTCCTGCCTGTCCCACCTCGTGCACCACTGCTGCTTCTGCCTTCAGAA-GGCTGGGTGACCCGGTTT--GT-GTGGCC-TGGCCATCGTGGCTCTTGCTGAAGCC-TTTTTTTGGGATGCT-AAGGCTTTCTAGCAGAGCTTGAGTCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3104961 155 - 7082604 ----ACGTGCCTGTGCGGTTTCCCGCCCGTCCTGCCCCGTGCACCACTGCTGCTTCTGCTTTC-GGA-GGCTGGGTGACCCGGTTT--GT-GTGGCC-TGGCAGTCGTGGCTCTTGCTGAAGCC-TTTTTTAGGGATGCT-AAGGCTTTCTAGCAGAGCTTGAGTCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590729 154 + 5243153 ----ACGTGCCTGTGCGGTTTCTTGCCCGTCCCACCCCGTGCACCACTGCTGCTTCTGCCTTC-GGA-GGCTGGGTGACCCGGTTT--GT-GTGGCC-TGGCAGTCGTGGCTCTTGCTGAAGCC-CTTTTTAGGGATGCT-AAGGCTTTCTAGCAGAGCTTGAGTC- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1925418 156 - 1938448 ----ACGTGCCTGTGCGGTTTCCTGCTTGTCCTGCCCCATGCACCACTGCTGCTTCTGCCTTCGGAA-GGCTGGGTGACCCGGTTT--GT-GTGGCC-TGGCTGTCGTGGCTCTTGCTGAAGCC-TTTTTTAGGAATGCT-AAGGCTTTCTAGCAGAGCTTGAGTCC i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2039009 159 + 64289059 ----GCGCACC-GCATTACCTTCTACCCAGCCCGCCCCAACCACTGCCATCACCACTTCCCCCAGAAGGGCAGGGTCATCCAGTGC--ATCATGACCATGGTATTCTCTGTTCTCACTAAAATT-GTTTTTGGGGACAGTGGATGTTTTTTGGCAAAGCTTGCAGCC i canFam3.chr17 I 3 I 3179 s dasNov3.JH580157 568014 157 + 2232271 ATAAGCATATCTCT-TTGTTCTCTACCCATTCCATCCCA---ACTATCACCACTTTTTCCTTCAAAA-AGGTAAGTTGCCCTATTTCATC-ATGATCACCATATTCATTATTCTAGCTAAAATA---ATTAAGTGCTATG-GATAGTTTTTGGCAAAGCTCAAATCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2647886 1000 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 959196 733 + 1238772 I e otoGar3.GL873658 2538245 18 + 5252280 I a score=3851053.000000 s hg38.chr2_KI270769v1_alt 53580 387 + 120616 TGTAATTCTT-ACTGCCTGGTACTA-------TGGGAAGCTGAAA------------------GGCAGAGACA---TCTTTCT-------TGCCAAGGCTGCCAGCTGAAG--CTTCAAGGTCAGTGTGCCAGACCACCCCTGTGTCCCACAAGTGCCCA-CACGCACCTGCCACGTGCA-G-ACAGA---GGTACCGGAGCAGTACTGAAAGCAAT-CATGGTTTAA---GCTTTC---AAATCCAAGTAAGTGCTTCTGCATTATGGCAACTGTCACTCATGATCCTGACTGCAAAGGC-----AGAGTCGG--AGTGTTTTCG-GACTCATTCTTGGTTGTGAAGTCACAGTTAATGTGGGAGCCA------CCAA--------------AGTG-------------GCACGTTAT---------TACACTAACTGACATTGGGAAGAAATGTGGGACTCAGAGACTTTGCTGTCTACAGGTTGT s panTro5.chr2A 3514174 387 + 111504155 TGTAATTCTT-ACTGCCTGGTACTA-------TGGGAAGCTGAAA------------------GGCAGAGACA---TCTTTCT-------TGCCAAGGCTGCCAGCTGAAG--CTTCAAGGTCAGTGTGCCAGACCACCCCTGTGTCCCACAAGTGCCCA-CACGCACCTGCCACGTGCA-G-ACAGA---GGTACCGGAGCAGTACTGAAAGCAAT-CATGGTTTAA---GGTTTC---AAATCCAAGTAAGTGCTCCTGCATTATGGCAACTGTCACTCATGATCCTGACTGCAAAGGC-----AGAGTCGG--AGTGTTTTCG-GACTCATTCTTGGTTGTGAAGTCACAGTTAATGTGGGAGCCA------CCAA--------------AGTG-------------GCACGTTAT---------TACACTAACTGACATTGGGAAGAAATGTGGGACTCAGAGACTTTGCTGTCTACAGGCTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375127 387 + 114371477 TGTAATTCTT-ACTGCCTGGTACTA-------TGGGAAGCTGAAA------------------GGCAGAGACA---TCTTTCT-------TGCCAAGGCTGCCAGCTGAAG--CTTCAAGGTCAGTGTGCCAGACCACCCCTGTGTCCCACAAGTGCCCA-CACGCACCTGCCACGTGCA-G-ACAGA---GGTACCGGAGCAGTACTGAAAGCAAT-CATGGTTTAA---GGTTTC---AAATCCAAGTAAGTGCTCCTGCATTATGGCAACTGTCACTCATGATCCTGACTGCAAAGGC-----AGAGTCGG--AGTGTTTTCG-GACTCATTCTTGGTTGTGAAGTCACAGTTAATGTGGGAGCCA------CCAA--------------AGTG-------------GCACGTTAT---------TACACTAACTGACATTGGGAAGAAATGTGGGACTCAGAGACTTTGCTGTCTACAGGCTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 252619 387 + 637652 TGTAATTCTT-ACTGCCTGGTACTA-------TGGGAAGCTGAAA------------------GGCAGAGACA---TCTTTCT-------TGCCAAGGCTGCCGGCTGAAG--CTTCAAGGTCAGTGTGCCAGACCACCCCTGTGTCCCACAAGTGCCCA-CACGCACCTGCCACGTGCA-G-ACAGA---GGTACTGGAGCAGTACTGAAAGCAAT-CATGGTTTAA---GCTTTC---AAATCCAAGTAAGTGCTCCTGCATTATGGCAACTGTCACTCATGATCCTGACTGCAAAGGC-----AGAGTCGG--AGTGTTTTCG-GACTCATTCTTGGTTGTGAAGTCACAGTTAATGTGGGAGCCA------CCAA--------------AGTG-------------GCACGTTAT---------TACACTAACTGACATTGGGAAGAAATGTGGGACTCAGAGACTTTGCTGTCTACAGGCCGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3047525 368 + 81552678 TGTAATTCTT-ACTGCCTGGTACTA-------TGGGAAGCTGAAA------------------GGCAGAGACA---TCTTTCT-------TGCCAAGGCTGCCAGCTGAAG--CTTCAAGGTCAGTGTGCCAGACCACTCCTGTGTCCCACAAGTGCTCA-CACGCGCCTGCCATGTGCA-G-ACAGA---GGTGCCGGAGCAGTACTGAAAGCAAT-CATGGTTTAA---GCTTTC---ACATCCAAGTAAGTGGTACTGCATTATGGCAACTGTCACTCATGATCCCGACTGCGAAGGC-----AGAGTCAG--AGT--------------------GTTGTGAAGTCACAGTTAACGTGCGAGCCA------CCAA--------------AGTG-------------GCACATTAT---------TACACTAACTGACATTGGGAAGAAATGTGGGACTCAGAGGCTTCGCTATCTACAGGCCGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312085 390 + 108979918 TGTAATTCGT-ACTGCCTGGTACTG-------TGAGAAGCCAAAA------------------GGCAGGGACC---TCTTTCT-------TGCCGAGGCCGCCGGCTCAAA--CTTCAAGGTCAGTGTGCCAGACCACTCCTGTGTCCCACAGGTGCTCA-CACGCACCTGCCACGTGCA-G-ACAGAGGTGGTGCCGGAGCAGTACGGAAAGCAAT-CATGGTTTAA---GCTTTC---AAATCAAAGTAAGTGGTACTGCATTACGGCAACTGTCACTCACGATCCTGACTGCAAAGGC-----AGAGTCAG--AGTGTTTTTG-GACTCATTCTCGGTTGTGAAGTCACAGATAATGTGGGAGCCA------CCAA--------------AGCG-------------GCACATTAT---------TACACTAACTGAGATTGGGAAGAAATGTGGGACTCAGAGGCTTTGCTGTCTACAGGCTGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023219 390 - 111193037 TGTAATTCGT-ACTGCCTGGTACTG-------TGAGAAGCCAAAA------------------GGCAGGGACC---TCTTTCT-------TGCCGAGGCTGCCGGCTAAAA--CTTCAAGGTCAGTGTGCCAGACCACTCCTGTGTCCCACAGGTGCTCA-CACGCACCTGCCACGTGCA-G-ACAGAGGTGGTGCCGGAGCAGTACTGAAAGCAAT-CATGGTTTAA---GCTTTC---AAATCAAAGTAAGTGGTACTGCATTACGGCAACTGTCACTCATGATCCTGACTGCAAAGGC-----AGAGTCAG--AGTGTTTTTG-GACTCATTCTCGGTTGTGAAGTCACAGATAATGTGGGAGCCA------CCAA--------------AGCG-------------GCACATTAT---------TACACTAACTGAGATTGGGAAGAAATGTGGGACTCAGAGACTTTGCTGTCTACAGGCTGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416180 388 + 3644372 TGTAATTCTT-ACTGCCTGGTACTG-------GGAGAAGCCAAAA------------------GGCAGGGACC---TCTTTCT-------TGCCGAGGCTGCCGGCTCAAA--CTTCAAGGTCAGTGTGCCAGACCACTCCTGTGTCCCACAAGTGCTCA-CACGCACCTGCCACGTGCA-G-ACAGAGGTGGTGCCGGAGCAGTACTGAAAGCAAT-CGTGGTTTAA---GCTTTC---AAATCAAAGTAAGTGGTACTGCATTACGGCAACTGTCACTCATGATCCGGACTGCAAAGGC-----AGAGTCAG--AGTGTTTTTG-GACTCATTCTCGGTTGTGAAGTCACAGATAATGTGGGAGCCA------CCAA--------------AGCG-------------GCACATTAT---------TACACTAACTGAGATTGGGAAGAAATGTGGGACTCAGAGACTTTGctgtctacaggct-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3371653 384 - 10304083 CGTAATTCTT-ACTGCCTGGTACTG-------TGAGAAGCCAAAA------------------GGCACAGACC---TCTTTCT-------TGCCAAGGCTGCCGGCTAAAA--CGTCAAGGTCAGTGTGCCAGGCCACTCCTGTGTCCCACAAGTGCT-------CACCTGCCATGTGCA-G-ACAGAGGTGGTGCCGGAGCAGTACTGAAAGCAAT-CATGGTTTAA---GCTTTC---AAATCAAAGTAAGGGGTACTGCATTATGGCAACTGTCACTCATGATCCTGACTGCAAAGGC-----AGAGTCAG--AGTGTTTTTG-GACTCATTCTCGGTTGTGAAGTCACAGATAATGTGGAAGCCA------CCAA--------------AGCG-------------GCACATTAT---------TACACTAACTGACATTGGGAAGAAACGTGGGACTCAGAGACTTTGCTGTCTACAGGCTGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3460534 390 - 107702431 TGTAATTCTT-ATTGCCTGGTACTA-------TGAGAAGCCAAAA------------------GGCAGAGACC---TCTTTCT-------TGCCAAGGCTGCCAGCTAAAA--CTTCAAGGTCAGTGTGCCAGACCACTCCTGTGTCCCACAAATGCTCA-CACGCACCTGCCATGTGCA-G-ACACAGGTGGTGCCGGAGCAGTACTGAAAGCAAT-CATGGTTTAA---GCTTTC---AAATCAAAGTAAGTGGTACTGCATTATGGCAACTGTCACTCATGATCCTGACTGCAAAGGC-----AGAGTCAG--CATGTTTTTG-GACTCATTCTCGGTTGTGAAGTCACAGATAATGTGGGAGCCC------CCAA--------------AGCG-------------GCACATTAT---------TACACTAACTGACATTGGGAAGAAATGTGGGACTCAGGGACTTTGCTGTCTACCGGCTGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1004535 390 + 1565135 TGTAATTCTT-ACTGCCTGGTACTG-------TGAGAAGCCAAAA------------------GGCAGAGACG---TCTTTCT-------TGCCAAGGCTGCCGGCTAAAA--CGTCAAGGTCAGTGTGCCAGGCCACTCCTGTGTCCCGCAAGTGCTCA-CACGCACCTGCCATGTGCA-G-ACAGAGGTGGTGCCGGAGCAGTGCTGAAAGCGAT-CATGGTTTGA---GCTTTC---ACATCAAAGTAAGTGGTACCGCATTGTGGCAACTGTCACTCATGACCCTGGCTGCAAAGGC-----AGAGTCAG--AGTGTTTTTG-GACTCATTCTCGGTTGTGAAGTCACAGATAATGTGGGAGCCA------CCAA--------------AGCA-------------GCACATTAT---------TACACTCACTGACATTGGGAAGAAACGTGGGACTCAGAGACTTTGCTGTCTACAGGCAGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3368904 396 - 13651311 TGTAATTCTT-ATTGCCTGGTACTA-------TGAGAAGCCAAAA------------------GGCAGAGACC---TCTTTCT-------TGCCGAGGCTGCCGGCTACAA--CTTCAAGGTCAGTGTGCCAGACCACTCCTGTGTCCCACAAGTGCTCA-CACGCACCTGCCATGTGCA-G-ACAGAGGTGGTGCTGGAGCAGTACTGAAAGCAAT-CATGGTTTAA---GCTTTC---AAATCAAAGTAAGTGGTACTGCATTATGGCAACTGTCACTCATGATCCTGACTGCAAAGGC-----AGAGTCAG--AGTGTTTTTG-GACTCATTCTTAGTTGTGAAGTCACAGATAATGTGGGAGCCACCAAAGCCAA--------------AGCG-------------GCACATTAT---------TACACTAACTGACATTGGGAAGAAATGTGGGACTCAGAGACTCTGCTGTCTGCAGGCTGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3455309 382 - 108792865 TGTGATTCTT-ACTGCCTGCTACTA-------TGGGAAGCTAAAA------------------TGCAGAGGCA---TCTTTCT-------TGCCAAGGCTGCCGGCTAAAG--CTTCAAGGTCAGTGTGCCAGAGCACTCCTGCATCCCACAAGTGCTCA-CACTCACCTGCCAGGTACA-G-ACAGA---GGTGCCGGAGCAGTATTGAAAGCAGT-CATGGTTTCA---GCTTTC---ACATCAAAGTCAGTGGTCCTGCATCAT---CTCTGTCACTCATGATCCTGACTCC--AGGC-----AGAGGCAG--AGTGCTTTCC-GACTCATTCTTAGTTGTGAAGTCACAGTTAATGTGGGAGGCA------CCAA--------------ACCA-------------GCACGTTTT---------TACACTAACCAACATTGGGAAGAAATGTGGGACCCAGAGCCTGCGCTGTTTACGGGCTGt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105116 388 - 7082604 TGTAATTCTTAACTGCTTGCTACTA-------TGGGAAGCTGAAA------------------TGCAGAGGCA---TCTTTCT-------TGCTGAGGCTGCCGGCTAAAG--CTTCAAGGTCAGTGTGCCAGACCACGCCTGCATCCCAC-AGTGCTCA-CAGTCACCTGCCAGGTGCA-G-ACAGA---GGTGCTAGAGCAGTACTGAAAGCAAT-CATGGTTTCA---GCTTTC---ACATCAAAGTAAGTGGTCCTGCATTATGACAGCTATCACTCATGATCCTAACTCCAAAGGG-----AGAGTCAG--AGTGTTTTCCTGACTCATTCTTGGTTGTGAAGTCACAGTTAATGTGGGAGGCA------CCAA--------------ACCA-------------GCACGTTAT---------TACACTAACTGACATTGGGAAGAAATGTGGGACCCAGAGCCTTCACTGTTTATGGGCTGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 590883 379 + 5243153 -------CTT-ACTACCTGCTACTG-------TGGGAAGCTGAAA------------------TGCAGAGACG---TCTTTCT-------TGCTGAGGCTGCCGGCTAAAG--CTTCAAGGTCAGTGTGCCAGACCACGCCTGCGTCCCACAAGTGCTCA-CACCCACCTGCCAGGTGCA-G-ACAGA---GGTGCCGGAGCAGTATTGAAAGCAAT-CATGGTTTCA---GCTTTC---ACATCAAAGTAAGTGGTCCTGCGTTATGATAGCTGTCACTCATGATCCTGACTCCAAAGGC-----AGAGTCAG--AGTGTTTTCC-GACTCATTCTTGGTTGTGAAGTCACAGTTAATGTGGGAGGCA------CCAA--------------ACCA-------------GCACGTTAT---------TACACTAACTGACATTGGGAAGAAATGT-GGACCCAGAGCCCTCGCTGtttatgggctgt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1925574 387 - 1938448 TGTGATTCTT-ACTGCCTGCTACTA-------TGGGAAGCTGAAA------------------TGCAGAAGCA---TCTTTCT-------TGCCGAGGCTGCCAGCTAAAG--CTTTAAAGTCAGTGTGCCAGAGCACTCCTGCGTCCCACAAGTGCTCG-CACTTACCTGCCAGGTGCA-G-ACAGA---GGTGCCGGAGCAGTATTGAAAGCAAT-CATGGTTTCA---GCTTTC---ACATCAAAGTAAGTAGTCCTGCATTATGACAACTGTCACTCATGATCCTGACTCCAAAGGC-----AGAGTCAG--AGTGTTTTCC-GACTCATTCTTGGTTGTGAAGTCACAGTTCATGTGGGAGGCA------CCAA--------------ACCA-------------GGACGTTAT---------TACACTAACTGACATTGGGAAGAAATGTGGGACCCAGAGCCTTCGCTGTTTACGGGCTGT i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2042347 395 + 64289059 tgtaattctt-cCT---TACTATTA-------TTGGTAAATTAAA------------------AGCAAGGAAATATTCTCTTG-------TGTAAAAATCGTATGCC------CTTAAA------TGTAGCAGGCCATTCACAGGTCCTGCAAATACT-G-TAAGCATCTATCTCCTTTATT-ACTGA---GGCACTGGGgcaatatttaaagagct-gatggtttaaaatgttcca---gaatcaaagcaaATTATATTGTATAATGACAACTGTCATTTGTAATACTGACTCCAAAGGCGGATAAGGTTCAG-AAGTGCTTTCT-GAATTGTTCCTGGTTGTAAAGTAACAATT-ATATGGAAGGTA------CCAA--------------GCTGCATCAACAGAAGATCAAATTAT---------TCCATTCAGTAATATTAGCAGGAAATAAGAGATTTAGAGTCTGC---ATCTCCAGGCTGT i canFam3.chr17 I 3179 C 0 s dasNov3.JH580157 568171 438 + 2232271 TAAAATCTTT-CTTATTTAGTATTATTTATACTAAGATGTTGCAAACAAAATTTTCCTCTTGTGTTGAAATCA---TGTTTTTGAACATATGTCCAGGCTGCCAACTAAAGTACTTAAA------TGTGCCAGACCATT-GTACATTTCGCATATATTTATTAAGCATTTACTTTGTGTT-GAACATA---GGCATTGGAGCAATGTTTAAAATGATAAATGGTTAAG---AATTTCCCAGAATCACAGCAAATTACACTGTATAATGACAACTGTCGTTCATAGTATTGACTCTAAAGAC-----ATGGTTTGGAAGTACTTTCT-GAATTATTCTTGACTTTGAGG-------TAATACAGAAGGCC------TCAAACTTACATAAACAGAGCA-------------TCaaattatatatatatatatattCTGTGATATGATGGAAAAATGTAGGATTTAGAAACTTTGCCATTTATAGACTAT i dasNov3.JH580157 C 0 I 647 e micMur3.chr8 2647886 1000 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 959196 733 + 1238772 I e otoGar3.GL873658 2538245 18 + 5252280 I a score=626135.000000 s hg38.chr2_KI270769v1_alt 53967 78 + 120616 TA--------------TAGAGTATTCATCTCAGATTAGGAATGATCCTGCCTTT-CTACCCACGTCACAGTGTTCCTGTATAGGTTCAGTGAC s panTro5.chr2A 3514561 78 + 111504155 TA--------------TAGAGTATTCATCTCAGATTAGGAATGATCCTGCCTTT-CTACCCACATCACAGTGTTCCTGTATAGGTTCAGTGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375514 78 + 114371477 TG--------------TAGAGTATtcatctcagattaggaatgatcctgccttt-ctacccacatcacagtgttcctgtataggttcagtgac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253006 78 + 637652 TA--------------TAGAGTATtcatctcagattaggaatgatcctgccttt-ctacccacgtcacagtgttcctgtataggttcagtgac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3047893 66 + 81552678 TA--------------TAGAGTATTCATCTCAGATTAGGAAGGATCCTGCCTTT-CTACCCACGTCACAGTGTTCC------------GTGAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312475 78 + 108979918 TA--------------Gagattattcatctcagattaggaatgatcctgccttt-ctacccacgtcacagtggtcctatgtaggttcaatgac i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023609 78 - 111193037 TA--------------Gagattattcatctcagattaggaatgatcctgccttt-ctacccacgtcacagtggtcctatgtaggttcaatgac i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416568 76 + 3644372 ----------------gagattattcatctcagattaggaatgatcctgccttt-ctacccacgtcacagtggtcctatgcaggttcaatgac i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372037 78 - 10304083 TA--------------Gagattattcatctcagattaggaatgatcctgccttt-ctacccacgtcacagtggtcctgtgtaggttcaatgac i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3460924 78 - 107702431 AA--------------Gagattattcatctcagattaggaatgatcctgccttt-ctgcccacgtcacagtggtcctgtgtaggttcaatgac i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1004925 78 + 1565135 TA--------------GAGATCATtcatctcagattaggaacgatcctgccttt-ctacccacgtcacagtgctcctgtgtaggttcaatgac i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3369300 78 - 13651311 TA--------------TAGATTATTCATCTCCGATGAGGAATGATCCTGCCTTT-CTACCCACGTCCCAGTGGTCCTGTGTAGGTTCAATGAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3455691 76 - 108792865 t----------------agattattcgtctcagagtaggaataatcctgcctttgctgcccacgtcccagtgtt-ctgtagaggttctatgac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105504 76 - 7082604 T----------------AGGTTATTTGTCTCAGATTAGGAATGATCCTGCCTTTGCTACCCACGTCCCAGTGTT-CTGTAGAGGTTCGATGAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591262 76 + 5243153 t----------------agattatttgtctcagattaggaataatcctgcccttgctacccacgtcccagtgtt-ctgtagaggttcgatgac i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1925961 76 - 1938448 T----------------AGAttatttgtctcagattgggagtcatcctgcctttgctgcccacgtcccagtgtt-cggtagaggttcgaggac i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2042742 93 + 64289059 GGACCACCCCACCTcccagatctctcatccctgggatggaagtaaagtgcctttcctgcctgctgtgcagtgctgctggacaagttgagtgaa i canFam3.chr17 C 0 C 0 e micMur3.chr8 2647886 1000 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 959196 733 + 1238772 I e dasNov3.JH580157 568609 647 + 2232271 I e otoGar3.GL873658 2538245 18 + 5252280 I a score=811390.000000 s hg38.chr2_KI270769v1_alt 54045 86 + 120616 A------TAAGGTATGCGGAAGTACTTTGAAAACTAC-AACAACAAGCAGTTATT----AGGAG-CAGCAGCATATTATAATTTTTGGGAAAACTAAG s panTro5.chr2A 3514639 86 + 111504155 A------TAAGGTATGCGGAAGTACTTTGAAAACTAC-AACAACAAGCAGTTATT----AGGAG-CAGCAGCATATTATAATTTTTGGGAAAACTAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375592 86 + 114371477 a------taaggtatgcggaagtactttgaaaactac-aaCAACAAGCAGTTATT----AGGAG-CAGCAGCATATTATAATTTTTGGGAAAACTAAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253084 86 + 637652 a------taaggtatgcggaagtactttgaaaactac-aaCAACAAGCAGTTATT----AGGAG-CAGCAGCATATTATAATTTTTGGGAAAACTAAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3047959 86 + 81552678 G------TAAGGTATGCGGAAGTACTTTGAAAACTAC-AACAACAAGCCGTTATT----AGGAG-CAGCAGCATATTGTAATTTTTGGAAAAACTAAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312553 86 + 108979918 a------taaggtatgcggaagtactttgaaaacGAC-AACAACAAGCAGTTTTT----AGGAG-CAGCAGCATAGTATGATTTTAGGAAAAACGAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023687 86 - 111193037 a------taaggtatgcggaagtactttgaaaacGAC-AACAACAAGCAGTTTTT----AGGAG-CAGCAGCATAGTATGATTTTTGGAAAAACGAAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416644 86 + 3644372 a------taaggtatgcggaagtactttgaaaacGAC-AACAAGAAGCAGTTTTT----AGGAG-CAGCAGCATAGTATGATTTTTGGAAAAACGAAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372115 86 - 10304083 a------taaggtgtgcggaagtactttgaaaactac-aaCAACAAGCAGTTTTT----AGGAG-CAGCAGCATAGTATGATTTTTGGAAAAACGAAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461002 85 - 107702431 a------taaggtat-cagaagtactttgaaaactac-aaCAACAAGCAGTTATT----AGGAG-CAGCAGCATAGTATGACTTTTGGAAAAACGAAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005003 86 + 1565135 a------taaggtgtgcggaagtactttgaaaactac-aaCAACAAGCAGTTTTT----AGGAG-CAGCAGCATAGTATGATTTTTGGAAAAACGAAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3369378 85 - 13651311 A------TAAGGTGTGCGGAAGTACTTT-AAAACTAC-AACAAGAAGCAGTTATT----AGGAG-CCGCAGCATAGTATAATTTTTGGAAAAACTAAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3455767 86 - 108792865 a------t-gggtatgcagaagtgctttgaaaactct-aaCAACAGGCGGGTAGT---CAGGAG-CCGCAGCATGTTATGATTTTTGGAAAAACTAAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105580 95 - 7082604 ACCTCTCC-AGGTGTGCAGAAGTGCTGCAAAAACTGT-ACCAGCAGGCGGGTAGTGAGCAGGAG-CAGCAGCATGTTACCGTTTTTGGGAAAACTGAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591338 89 + 5243153 a------t-aggtatgcagaagtgcttcgaaagctgt-aaCAACAGGCGGGTAGTCAGTAGGAG-CAGCAGCATATGATAATTTTTGGAAAAACTAAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926037 89 - 1938448 a------t-aggtatgcgcaagtgcttcgaaaactgt-aaCAACAGGCGGGTGGTCAGTAGGAG-CAGCAGCATATTATACTTTTGGGGAAAACTAAG i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 959929 88 + 1238772 a------tagggtatgtgcaagtgctttgaaaactataaaAAACAAGCAGTTATT----AGGAGCCAGCAGCATATTATAATTTTTGGAAAAAATAAG i proCoq1.NW_012151163v1 I 733 I 192 s canFam3.chr17 2042835 81 + 64289059 g------tcatgtctgtggagg-gcttgcagaactgt-aaCAACAAGCAGTT-------AGGAG-CAGCAGCATGTCACAGCTCTTTTTTAAATGAG- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2647886 1000 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e dasNov3.JH580157 568609 647 + 2232271 I e otoGar3.GL873658 2538245 18 + 5252280 I a score=373283.000000 s hg38.chr2_KI270769v1_alt 54131 40 + 120616 ATTCTTCTTGTCAGATTCCTCCTTTCACTTCCTAACTGTT s panTro5.chr2A 3514725 40 + 111504155 ATTCTTCTTGTCAGATTCCTCCTTTCACTTCCTAACTGTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375678 40 + 114371477 ATTCTTCTTGTCAGATTCCTCCTTTCACTTCCTAACTGTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253170 40 + 637652 ATTCTTCTTGTCAGATTCCTCCTTTCACTTCCCAACTGTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048045 40 + 81552678 ATTCTTCTTGTCGAATTCCTCCTTTCACTTCCCAGCTGTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312639 40 + 108979918 ATTCTTCTTGTCGAATTCCCGCTTTCACTTCCCAGCTGTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023773 40 - 111193037 ATTCTTCTTGTCGAATTCCCGCTTTCACTTCCCAGCTGTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416730 40 + 3644372 ATTCTTCTTGTCGAATTCCCGCTTTCACTTCCCAGCTGTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372201 40 - 10304083 ATGATTCTTGTCGAATTCCCCCTTTCACTTCCCAGCTGTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461087 40 - 107702431 ATTCTTCTTGTCGAATTCCCCCTTTCACTTCCCAGCTGTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005089 40 + 1565135 ATGATTCTTGTCGAATTCCCCCTTTCACTTCCCAGCTGTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3369463 40 - 13651311 ATTCTTCTTGTCGAATTCCCCCTTTCACTTCCCAGCTGTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3455853 40 - 108792865 ATTCTTCTTGCCACATTCCTCCTTTGACCTGCCAGCGGTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105675 40 - 7082604 ATTCTTCTTGCCACGTTCCTCCTCTCACTTGCCAGCAGTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591427 40 + 5243153 ATTCTTCTTGCCAGATTCCTCCTTTCACTTGCCAGCGGTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926126 40 - 1938448 ATTCTTCTTGCCACATTCCTCCTTTCACTTGCCAGCGGTA i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2042916 40 + 64289059 GTTATATTTGTTGAGTTCCTCCTTTCCATTTCCAGTTATT i canFam3.chr17 C 0 I 197 e micMur3.chr8 2647886 1000 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 960017 192 + 1238772 I e dasNov3.JH580157 568609 647 + 2232271 I e otoGar3.GL873658 2538245 18 + 5252280 I a score=263913.000000 s hg38.chr2_KI270769v1_alt 54171 29 + 120616 GTGGTAGAAGTTTTGCGGAGTTCCAAGAT------- s panTro5.chr2A 3514765 29 + 111504155 GTGGTAGAAGTTTTGCGGAGTTCCAAGAT------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375718 29 + 114371477 GTGGTAGAAGTTTTGCGGAGTTCCAAGAT------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253210 29 + 637652 GTGGTAGAAGTTTTGCGGAGTTCCAAGAT------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048085 29 + 81552678 GTGATGGAAGTTTTGCGGAGTTCCAAGAT------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312679 29 + 108979918 GTGATGGAAGTTTTGTGGAGTTCCAAAAC------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023813 29 - 111193037 GTGATGGAAGTTTTGTGGAGTTCCAAAAC------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416770 29 + 3644372 GTGATGGAAGTTTTGTGGAGTTCCAAAAC------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372241 29 - 10304083 GTGATGGAAGTTTTGTGGAGTTCCAAAAC------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461127 29 - 107702431 GTGATGGAAGTTTTGTGGAGTTCCGAAAC------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005129 29 + 1565135 GTGATGGAAGTTTTGTGGAGTTCCAAAAC------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3369503 29 - 13651311 GTGATGGAAGTTTTGTGGAGTTCCAGAAC------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3455893 29 - 108792865 GTGACGGAAGTTCCGCAGAGTTCCCAGGT------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105715 29 - 7082604 GTGATGGAAGTTCTGCGGAGTTCCCAGGT------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591467 29 + 5243153 GTGATGGAAGTTCTGCGGAGTTCCCAGGT------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926166 29 - 1938448 GTTACAGAAGTTCTGCAGAGTTCCCAGGT------- i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2043153 36 + 64289059 TTGATGGAAGTTCTGTGGAAGTTCTCCACAGAAGAA i canFam3.chr17 I 197 C 0 e micMur3.chr8 2647886 1000 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 960017 192 + 1238772 I e dasNov3.JH580157 568609 647 + 2232271 I e otoGar3.GL873658 2538245 18 + 5252280 I a score=321843.000000 s hg38.chr2_KI270769v1_alt 54200 37 + 120616 GATGGTGTTAACAGTGTTCCTAGTAAGGAAGGAAGGG s panTro5.chr2A 3514794 37 + 111504155 GATGGTGTTAACAGTGTTCCTAGTAAGGAAGGAAGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375747 37 + 114371477 GATGGTGTTAACAGTGTTCCTAGTAAGGAAGGAAGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253239 37 + 637652 GATGGTGTTAACAGTGTTCCTAGTAAGGAAGGAAGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048114 37 + 81552678 GATGGTGTTAACAGTGTTCCTCGTAAGGAAGGAAGGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312708 37 + 108979918 GGTGGTGTCGTCAGTGTTCCTAGCGAGGAAGGAAGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023842 37 - 111193037 GGTGGTGTCGTCAGTGTTCCTAGCGAGGAAGGAAGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416799 37 + 3644372 GGTGGTGTCGTCAGTGTTCCTAGCGAGGAAGGAAGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372270 37 - 10304083 GGTGGTGTTGTCAGTGTTCCTAGCGAGGAAGGAAGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461156 37 - 107702431 GGTGGTGGTGTCAGTGTTCCTAGCGAGGAAGGAAGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005158 37 + 1565135 GGTGGTGTTGTCAGTGTTCCTAGCGAGGAAGGAAGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3369532 36 - 13651311 CGTGGTGTTGTCAGTGTTCCTAGCGAGGAAGGAA-GG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3455922 34 - 108792865 GATGTC---GTCAGTGTCCCTGCTGAGGAAGGAAGGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105744 37 - 7082604 GATGTCTTTGTCAGTGGCCCTGGTGAGGAAGGAAGGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591496 34 + 5243153 GATGTG---GTCAGTGTCCCTGGTGAGGAAGGAATGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926195 37 - 1938448 GATGTCGTCGTCAGTGTCCCTGGTGAGGAAGGAAGGG i aotNan1.NW_018507213v1 C 0 I 42 s otoGar3.GL873658 2538263 35 + 5252280 GGTGCTGGTATCAGTGCTGCCAGAAGGGAAGTGAG-- i otoGar3.GL873658 I 18 C 0 s canFam3.chr17 2043189 37 + 64289059 GGTGGTATCCTCAGGACCCGCAGCAGGGAGGTAGTGG i canFam3.chr17 C 0 C 0 e micMur3.chr8 2647886 1000 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 960017 192 + 1238772 I e dasNov3.JH580157 568609 647 + 2232271 I a score=248911.000000 s hg38.chr2_KI270769v1_alt 54237 50 + 120616 GCCCTCTTTATCCTTATCTGTGGAGA------------AAAAACAGGCG---TTTCTA---------GGCCCCT s panTro5.chr2A 3514831 50 + 111504155 GCCCTCTTTATCCTTATCTGTGGAGA------------AAAAACAGGCA---TTTCTA---------GGCCCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375784 50 + 114371477 GCCCTCTTTATCCTTATCTGTGGAGA------------AAAAACAGGCA---TTTCTA---------GGCCCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253276 50 + 637652 GCCCTCTTTATCCTTATCTGTGGAGA------------AAAAACGGGCA---TTTCTA---------GGCCCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048151 48 + 81552678 G-TCTCCTTATCCTTATCTGTGGAGA------------AAAAACGGGCA---TTTCTA---------GGCACC- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312745 43 + 108979918 GCCC------TCCTTGTCTGTGGAG-------------AAAATCAGGCA---TTTCTA---------GGCACCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023879 43 - 111193037 GCCC------TCCTTGTCTGTGGAG-------------AAAATCAGGCA---TTTCTA---------GGCACCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416836 43 + 3644372 GCCC------TCCTTGTCTGTGGAG-------------AAAATCAGGCA---TTTCTA---------GGCACCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372307 43 - 10304083 GCCC------TCCTTGTCTGTGGAG-------------AAAATCAGGCA---TTTCTA---------GGCACCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461193 43 - 107702431 GCCC------TCCTTGTCTGTGGAG-------------AAAATCAGGCA---TTTCTA---------GGCACCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005195 43 + 1565135 GCCC------TCCTTGTCTGTGGAG-------------AAAATCAGGCA---TTTCTA---------GGCACCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3369568 43 - 13651311 GCCC------TCCTTATCTGTGGAG-------------AAAATCAGGCC---TTTCTA---------GGCAGCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3455956 41 - 108792865 --CC------TCCTGACCTGTGGAGG------------CGAAGCAGGCA---CTTCCA---------GGCACC- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105781 41 - 7082604 --CC------TCCTTACCCATGGAGG------------AGTAGCAGGCA---CTTCCC---------GGCACC- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591530 41 + 5243153 --CC------CGCTTACCTGTGGAGG------------AGAAGCAGGCA---CTTCCA---------GGCACC- i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2538298 49 + 5252280 ------CTGGTCCTTGCCTGTGCAGA------------GGGAT----CC---TTCCCACAACTGGACGGCCTCT i otoGar3.GL873658 C 0 I 3 s canFam3.chr17 2043226 56 + 64289059 ---------GTTCCTCCCTGCACAGATGGACCTCACTCAAGCATAGGCAGGTGTCCTG---------GGCACCT i canFam3.chr17 C 0 C 0 e micMur3.chr8 2647886 1000 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 960017 192 + 1238772 I e dasNov3.JH580157 568609 647 + 2232271 I e aotNan1.NW_018507213v1 1926232 42 - 1938448 I a score=26109.000000 s hg38.chr2_KI270769v1_alt 54287 6 + 120616 TGTTGT s panTro5.chr2A 3514881 6 + 111504155 TGTTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375834 6 + 114371477 TGTTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253326 6 + 637652 TGTTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048199 4 + 81552678 --TTGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312788 6 + 108979918 CATCGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023922 6 - 111193037 CATCGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416879 6 + 3644372 CATCGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372350 6 - 10304083 CATTGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461236 6 - 107702431 CATTGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005238 6 + 1565135 CATTGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3369611 6 - 13651311 CGTTGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3455997 6 - 108792865 TGGTGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105822 6 - 7082604 TGGTGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591571 6 + 5243153 TGGTGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926274 6 - 1938448 TGGTGC i aotNan1.NW_018507213v1 I 42 C 0 s otoGar3.GL873658 2538350 6 + 5252280 AGGCGC i otoGar3.GL873658 I 3 C 0 s canFam3.chr17 2043282 6 + 64289059 TACACC i canFam3.chr17 C 0 C 0 e micMur3.chr8 2647886 1000 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 960017 192 + 1238772 I e dasNov3.JH580157 568609 647 + 2232271 I a score=246742.000000 s hg38.chr2_KI270769v1_alt 54293 24 + 120616 CCTGGGCTTTGTACCCACTTCCA-T s panTro5.chr2A 3514887 24 + 111504155 CCTGGGCTTTGTACCCACTTCCA-T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375840 25 + 114371477 CCTGGGCTTTGTACCCACTTCCATT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253332 23 + 637652 CCTGGGCTTTGTACCCACTTCCA-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048203 24 + 81552678 CCTGGGTTTTGTACCCACTTCCA-T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312794 24 + 108979918 CCTGGGCTTTGCACCCACTTCCA-T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023928 24 - 111193037 CCTGGGCTTTGCACCCACTTCCA-T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416885 24 + 3644372 CCTGGGCTTTGCACCCACTTCCA-T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372356 24 - 10304083 CCTGGGCTTTGCACCCACTTCCA-T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461242 24 - 107702431 CCTGGGCTTTGCACCCACTTCCA-T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005244 24 + 1565135 CCTGGGCTTTGCACCCACTTCCA-T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3369617 24 - 13651311 CCTGGGCTTTGCACCCACTTCCG-T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456003 24 - 108792865 CCTGGGCGTTGTGCCCACGTCCT-T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105828 24 - 7082604 CCTGGGCTTTGTGCGCACTTCCA-T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591577 23 + 5243153 CC-GGGCTTTGTACCTGCCTCAG-T i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926280 24 - 1938448 CCTGGGCTTTGTGCCCACTTCCA-T i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2538356 23 + 5252280 TTTGGGC-TGGCATCTGCTTCCA-T i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2043288 21 + 64289059 CTCGAGCTGTGTACCAACTTC---- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 569256 24 + 2232271 CCCAGGCTTTGTATCAGCTTCAG-T i dasNov3.JH580157 I 647 C 0 e micMur3.chr8 2647886 1000 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 960017 192 + 1238772 I a score=116875.000000 s hg38.chr2_KI270769v1_alt 54317 10 + 120616 TTTTTTATTA s panTro5.chr2A 3514911 10 + 111504155 TTTTTTAATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375865 10 + 114371477 TTTTTTAATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253355 10 + 637652 TTTTTTAATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048227 10 + 81552678 TTTTTTAATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312818 10 + 108979918 TTTTTTAATA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023952 10 - 111193037 TTTTTTAATA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416909 10 + 3644372 TTTTTTAATA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372380 10 - 10304083 TTTTTTAATA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461266 10 - 107702431 TTTTTTAATA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005268 10 + 1565135 TTTTTTAATA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3369641 10 - 13651311 TTTTTTAATA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456027 10 - 108792865 TCTTTTAATA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105852 10 - 7082604 TCTTTTAATA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591600 10 + 5243153 TCTTTTAATA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926304 10 - 1938448 TCTTTTAATA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 960209 10 + 1238772 TTTTTTAATA i proCoq1.NW_012151163v1 I 192 C 0 s otoGar3.GL873658 2538379 9 + 5252280 -TTTTTTACA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2043309 6 + 64289059 TGGTTC---- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 569280 8 + 2232271 --TTTCCATA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2647886 1000 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I a score=245195.000000 s hg38.chr2_KI270769v1_alt 54327 26 + 120616 CCATAACTTAAAAGA-TAAAAAGAAAA s panTro5.chr2A 3514921 26 + 111504155 CCATAACTTAAAAGA-TAAAAAGAAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375875 26 + 114371477 CCATAACTTAAAAGA-TAAAAAGAAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253365 26 + 637652 CCATAACTTAAAAGA-TAAAAAGAAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048237 26 + 81552678 CCATAACTTAAAAGA-TAAAAAGAAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312828 22 + 108979918 CCATAACTTACAAGA-TAA----AAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023962 22 - 111193037 CCATAACTTACAAGA-TAA----AAAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416919 22 + 3644372 CCATAACTTACAAGA-TAA----AAAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372390 22 - 10304083 CCATAACTTACAAGA-TAA----AAAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461276 22 - 107702431 CCGTAACTTACAAGA-TAA----AAAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005278 23 + 1565135 CCATAACTTACAAGATTAA----AAAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3369651 26 - 13651311 CCATAACTTAAAAGA-TAAAAAGAAAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456037 25 - 108792865 CCTTAATGTGAAAGG-TAAAAA-GAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105862 25 - 7082604 CCATAACGTGAAAGG-TAGAAA-GAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591610 25 + 5243153 CCATAATGTGAAAGG-TAGAAA-GAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926314 25 - 1938448 CCATAACCTGAAAGG-TAAAAA-GAAA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2648886 26 - 159902609 CCATAACTTAAAAGA-TAAAAAGAAAA i micMur3.chr8 I 1000 I 130 s proCoq1.NW_012151163v1 960219 26 + 1238772 CCATAACTTAAAAGG-TAAAAAGAAAA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2538388 26 + 5252280 CCATAACTTAAAAGA-TAAAAAGAAAA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2043315 26 + 64289059 CTAGAACTCCAGAGA-TCAACAGAAAC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 569288 20 + 2232271 TCATAACTTTAAA-A-TAAAAA----- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91417213 143 - 120129022 I a score=25004.000000 s hg38.chr2_KI270769v1_alt 54353 4 + 120616 ATTG-- s panTro5.chr2A 3514947 4 + 111504155 ATTG-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375901 4 + 114371477 ATTG-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253391 4 + 637652 ATTG-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048263 4 + 81552678 ATTG-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312850 4 + 108979918 ATTG-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023984 4 - 111193037 ATTG-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416941 4 + 3644372 ATTG-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372412 4 - 10304083 ATTG-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461298 4 - 107702431 ATTG-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005301 4 + 1565135 ATGG-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3369677 4 - 13651311 ATTG-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456062 2 - 108792865 AC---- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105887 4 - 7082604 ACTG-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591635 4 + 5243153 ACTG-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926339 4 - 1938448 ACTG-- i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 960245 4 + 1238772 GTTG-- i proCoq1.NW_012151163v1 C 0 I 126 s otoGar3.GL873658 2538414 4 + 5252280 ACTG-- i otoGar3.GL873658 C 0 I 2 s canFam3.chr17 2043341 4 + 64289059 CCTG-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 569308 5 + 2232271 -ATGTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2648912 130 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I a score=988642.000000 s hg38.chr2_KI270769v1_alt 54357 93 + 120616 -TTTGCTTTCTGTACTAT-AT--------------CAGTTGAT-GGAG-AATCATGTTA----CCAAC-T--TTTTTAC-ATTTCAACACTTTT---CT---TGAATCT---TAAAACGGGGTTTAAT--- s panTro5.chr2A 3514951 93 + 111504155 -TTTGCTTTCTGTACTAT-AT--------------CAGTTGAT-GGAG-AATCATGTTA----CCAAC-T--TTTTTAC-ATTTCAACACTTTT---CT---TGAATCT---TAAAACGGGGTTTAAT--- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375905 93 + 114371477 -TTTGCTTTCTGTACTAT-AT--------------CAGTTGAT-GGAG-AATCATGTTA----CCAAC-T--TTTTTAC-ATTTCAACACTTTT---CT---TGAATCT---TAAAACGGGGTTTAAT--- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253395 93 + 637652 -TTTGCTTTCTGTACTGT-AT--------------CAGTTGGT-GGAG-AATCATGTTA----CCAAC-T--TTTTTAC-ATTTCAACACTTTT---CT---TGAATCT---TAAAACGGGGTTTAAT--- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048267 93 + 81552678 -TTTGCTTTATGTACTAT-AT--------------CAGTTGAT-GGAG-AATCATGTTA----CCAAC-T--TTTTTAC-ATTTCAACACTTTT---CT---TGAATCT---TAAAACGGGGTTTAAT--- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312854 107 + 108979918 -TTTGCTTTTTATACTAT-ATATATAGTATAGAAATTGTTGAT-GGAG-AATCATGTTA----CCAAC-T--GTTTTAC-ATTTCAACACTTTT---CT---TGAATCT---TAAAACGGGGTTTAAT--- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5023988 107 - 111193037 -TTTGCTTTTTATACTAT-ATATATAGTATAGAAATTGTTGAT-GGAG-AATCATGTTA----CCAAC-T--GTTTTAC-ATTTCAACACGTTT---CT---TGAATCT---TAAAACGGGGTTTAAT--- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3416945 107 + 3644372 -TTTGCTTTTTATACTAT-ATATATAGTATAGAAATTGTTGAT-GGAG-AATCATGTTA----CCAAC-T--GTTTTAC-ATTTCAACACTTTT---CT---TGAATCT---TAAAACGGGGTTTAAT--- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372416 107 - 10304083 -TTTGCTTTTTATACTAT-ATATATAGTATAGAAATTGTTGAT-GGAG-AATCATGTTA----CCAAC-T--GTTTTAC-ATTTCAACACTTTT---CT---TGAATCT---TAAAACGGGGTTTAAT--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461302 107 - 107702431 -TTTGCTTTTTATACTAT-ATATATAGTATAGAAATTGTTGAT-GGAG-AATCATGTTA----CCAAC-T--GTTTTAC-ATTTCAACACTTTT---CT---TGAATCT---TAAAACGGGGTTTAGT--- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005305 107 + 1565135 -TTTGCTTTTTATACTAT-ATATATAGTATAGAAATTGTTGAT-GGAG-AATCATGTTA----CCAGC-T--GTTTTAC-ATTTCAACACTTTT---CT---TGAATCT---TAAAACGGGGTTTAAT--- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3369681 107 - 13651311 -TTTGCTTTCTATACTAT-ATATATAGTTTAGAAATTGTTGAT-GGAG-AATCATGTTA----CCAAC-T--GTTTTAC-ATTTCAACACTTTT---CT---TGAATCT---TAAAACGGGGTTTAAT--- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456064 94 - 108792865 -TCTGCTTTCTATACTTTGGT--------------CGGTTGAT-GGAG-AATCGTGTTA----CCAAC-T--TTTTTGC-ATTGCAACACTTTT---CT---TGAATCT---TAAAACAGGGTTTAAT--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105891 94 - 7082604 -TTTGCTTTCTATACTTTGAT--------------CGGATGAT-GGAG-AATCATGTTA----CCAAC-T--TTTTTAC-ATTGCAACACTTTT---CT---TGAATCT---TAAAACAGGGTTTAAT--- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591639 95 + 5243153 -TTTGCTTTCTATATTTTGAT--------------TGGTTGAT-GGAG-AATCATGTTA----CCAACTT--TTTTTAC-ATTGTAACACTTTT---CT---TGAATCT---TAAAACAGGGTTTAAT--- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926343 94 - 1938448 -TTTGCTTTCTATACTTTGAT--------------CGGTTGAT-GGAG-AATCATGTTA----CCAAC-T--TTTTTAT-ATTGCAACACTTTT---CT---TGAATCT---TAAAACAGGGTTTAAT--- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2538420 96 + 5252280 -TTTCTTGCTTATACTTTGAC--------------CAGTTGAT-GGGA-AATTGTGTTG----CCAAC-TTCTTTTTAT-ATGGCAACACTTTT---CT---TGAATCT---TAAAATGGAGGTAAAT--- i otoGar3.GL873658 I 2 I 2 s canFam3.chr17 2043345 97 + 64289059 ----TTTTCCTATACACTGAT--------------CAGTTGACAGGGA-AATTGCATTAACTGACATT-T--TTTTTTT-ATTCTAGCGCTTTTTTCCT---TGAACCT---TGAAA--GAGTTAAGA--- i canFam3.chr17 C 0 I 4 s dasNov3.JH580157 569313 106 + 2232271 TCTATTTTCTTATACTTTTAT--------------CAGTTGAT-GGGGAAATAGTGTTA----CCAGC-T--TTTTTTCTATTGTAATATCTTT---TTTTCTAAATCTTAATAAAATGCAATAAGATATC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2648912 130 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 960249 126 + 1238772 I a score=2922535.000000 s hg38.chr2_KI270769v1_alt 54450 228 + 120616 TTTATTTACAGAAATCGGAAG----CACATAACTTGAAATTGAGAAGTTCTAAATCAGTGA-----------CTTTCTAAAC--TATACGA-----ATTTTTCATTATCCTCCATGTCACATTGTAGGAAATCTTTATAGTATTTGAGAG-AGAAAATTC-TGGGCCATAGGGTGATTTGTGGATGGAAAAGCCAAGTTAGTTGAAGTAGTTTTGCAAGTCAGCTTTCCTGGTCCTGAAGTATGTCCTATTT s panTro5.chr2A 3515044 228 + 111504155 TTTATTTACAGAAATCGGAAG----CACATAACTTGAAATTGAGAAGTTCTAAATCAGTGA-----------CTTTCTAAAC--TATACGA-----ATTTTTCATTATCCTCCATGTCACATTGTAGGAAATCTTTATAGTATTTGAGAG-AGAAAATTC-TGGGCCATAGGGTGATTTGTGGATGGAAAAGCCAAGTTAGTTGAAGTAGTTTTGCAGGTCAGCTTTCCTGGTCCTGAAGTATGTCCTATTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3375998 228 + 114371477 TTTATTTACAGAAATCGGAAG----CACATAACTTGAAATTGAGAAGTTCTAAATCAGTGA-----------CTTTCTAAAC--TATACGA-----ATTTTTCATTATCCTCCATGTCACATTGTAGGAAATCTTTATAGTATTTGAGAG-AGAAAATTC-TGGGCCATAGGGTGATTTGTGGATGGAAAAGCCAAGTTAGTTGAAGTAGTTTTGCAAGTCAGCTTTCCTGGTCCTGAAGTATGTCCTATTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253488 228 + 637652 TTTATTTACAGAAATCAGAAG----CACATAACTTGAAATTGAGAAGTTCTAAATCAGTGA-----------CTTTCTAAAC--TACACGA-----ATTTTTCATTATCCTCCATGTCACATTGTAGGAAATCTTTATAGTATTTGAGAG-AGAAAATTC-TGGGCCATAGGGTGATTTGTGGATGGAGAAGCCAAGTTAGTTGAAGTAGTTTTGCAAGTCAGCTTTCCTGGTCCTGAAGTATGTCCTATTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048360 228 + 81552678 TTTATTTACAGAAATCGGAAG----CACATAACTTGAAATTGAGAAGTTCTAAATCAGTGA-----------CTTTCTAAAC--TACACGA-----ATTTTTCATTATCCTCCATGTCACATTGTAGGAAATCTTTATAGTATTTGAGAG-AGAAAATTC-TGGGCCATAGGGTGATTTGTGGATGGAAAAGCCAAGTTAGTTGAAGGAGTTTTGCAAGTCAGCTTTCCTGGTCCTGAAGTATGTCCTATTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3312961 228 + 108979918 TTTATTTACAGAAATCGGAAG----CACATAACTTGAAATTGGGAAATTCTAAATCAGTGA-----------CTTTCTAAACTGTACACGA-----ATTTTTCATTATCCTCCATGTCACGTTGTAGGAAATCTTTATAGTA-TTGAGAG-AGAAAATCC-TGGGCCATAGGGTGA-TTGTGGATGGAAAAGCCAAGTTAGTTGAAGTAGTTTTGCAAGTCAGCTTTCCTGGTCCTAAAGTATTTCCTATTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5024095 228 - 111193037 TTTATTTACAGAAATCGGAAG----CACATAACTTGAAATTGGGAAATTCTAAATCAGTGA-----------CTTTCTAAACTGTACACGA-----ATTTTTCATTATCCTCCATGTCACGTTGTAGGAAATCTTTATAGTA-TTGAGAG-AGAAAATCC-TGGGCCATAGGGTGA-TTGTGGATGGAAAAGCCAAGTTAGTTGAAGTAGTTTTGCAAGTCAGCTTTCCTGGTCCTAAAGTATTTCCTATTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3417052 228 + 3644372 TTTATTTACAGAAATCGGAAG----CACATAACTTGAAATTGGGAAATTCTAAATCAGTGA-----------CTTTCTAAACTGTACACGA-----ATTTTTCATTATCCTCCATGTCACGTTGTAGGAAATCTTTATAGTA-TTGAGAG-AGAAAATCC-TGGGCCATAGGGTGA-TTGTGGATGGAAAAGCCAAGTTAGTTGAAGTAGTTTTGCAAGTCAGCTTTCCTGGTCCTAAAGTATTTCCTATTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372523 228 - 10304083 TTTATTTACAGAAATCAGAAG----CACATAACTTGAAATTGGGAAATTCTAAATCAGTGA-----------CTTTCTAAACTGTACACGA-----ATTTTTCATTATCCTCCATGTCACGTTGTAGGAAATCTTTATAGTA-TTGAGAG-AGAAAATCC-TGGGCCATAGGGTGA-TTGTGGATGGAAAAGCCAAGTTAGTTGAAGTAGTTTTGCAAGTCAGCTTTCCTGGTCCTTAAGTATTTCCTATTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461409 228 - 107702431 TTTATTTACAGGAATCGGAAG----CACGTAACTTGAAATAGGGAAATTCTAAATCAGCGA-----------CTTTCTAAACTGTACACGA-----ATTTTTCGTTATCCTCCATGTCACGTTGTAGGAAACCTTTATGGTA-TTGAGAG-AGAAAATCC-TGGGCCGTAGGATGA-TTGTAGATGGAAAAGCCAAGTTAGTTGAAGTAGTTTTGCAAGTCAGCTTTCCTGGTCCTAAAGTATTTCCTATTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005412 228 + 1565135 TTTATTTACAGAAATCGGAAG----CACATAACTTGAAATTGGGAAATTCTAAATCAGTGA-----------CTTTCTAAACTGTACACGA-----ATTTTTCATTATCCTCCATGTCACGTTGTAGGAAATCTTTATAGTA-TTGAGAG-AGAAAATCC-TGGGCCATAGGGTGA-TTGTGGATGGAAAAGCCAAGTTAGTTGAAGTAGTTTTGCAAGTCAGCTTTCCTGGTCCTAAAGTATCTCCTATTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3369788 228 - 13651311 TTTATTTACGGAAATCGGAAG----CACATGACTTGAAATTGGGAAATTCTAAATCAGTGA-----------CTTTCTAAACTGTACACAA-----ATTTTTCATTATCCTCCATGTCACGTTGTAGGAAATCTTTATAGTA-CTGAGAA-AGAAAATCC-TGGGCCGTAGGGTGA-TTGTGGATGGAAAAGCCAAGTTAATTGAAGCAGTTTTGCAAGTCAGCTTTCCTGGTCCTAAAGTATTTCCTATTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456158 221 - 108792865 TTTATTCACAGAAATAGGAAG----CACATGACTTGAAATTGAGAAATTCGAAATCAATGA-----------CTTTCTAAATTGTACA--------TTTTTTGATTAACCTCCGTGTCACATCGTAGGAAATC-TTATAGTGTTTGAGAG-AGAAAGTTC-TG---CATAGGGTGATTTGTGGATGGAGAAGCCAGGTGAGTTGAAGTAG-TTTGCAAGTCGGCCATCCT-GTCCTGAAGTATTTCCTGTTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3105985 215 - 7082604 TTTATTTACAGAAATAGGAAG----CACATGACTTGAAATTGAGAAATTCTAAATCAATGA-----------CTTTCTAAATTGTACACAAT----TTTTTTTGTTATCCTGCATGTCACATTGTGGGAAATCTTTATAGCATTTGAGAG-AGGAAGTTC-CG---CATA-GGTGATTT------------GCCAAGTGAGTTGAAGCAGTTTTGCAAGTCAGCCATCCTGGTCCTGGAGTATTTCCTATTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591734 228 + 5243153 TTTATTTACAGAAATAGGAAG----CACATGACTTGAAATTGAGAAATTCTAAATCAATGA-----------CTTTCTAAATTGTACACAAT----TTTTTTTATTATCCTCCATGTCACATTGTAGGAAATCTTTATGGCATTTGAGAG-GGAAAGTTC-TG---CACAGGGTGGTTTGCAGATAGAGAAGCCAAGTGAGTTGAAGTAGTTTTGCAAGTCAGCCATCTTGGTCCTGAAGTATTTCCTATTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926437 231 - 1938448 TTTATTTACAGAAATAGGAAG----CACATGACTTGAAATTGAGAAATTCTAAATCAATGA-----------CTTTCTAAATTGTACACAAT----TTTTTTTATTATCTTCCGTGTCACATTGTAGGAAATCTTTATAGCATTTGAGAG-AGAAAGTTC-TGGGCCATAGGGTGATTTGTGGATGGAGAAGCCAAGTGAGTTGAGGTAGTTTTGCAAGTCAGCCATCCCAGTCCTGAAGTATTTCCTGTTT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2649042 232 - 159902609 TTTATTTTCAAAAATAGGAAG----CACATAAATTGATATTGAGAAATTCTAACTCAATGA-----------CTTTCTAAACTGTACACAGTTGATTTTTTTCGTTAACCTCAGTATCACGTTGTGGGAAATTTTTATAGTATTTGAGA---GAAAGCTC-TGTGTCATAGGGTGACTTGAAGTTGGAACAGACAAGTCAGCTGAAATAGTT-TGCAAGTCAGTTTTCCTGGTCCTAAAGTATTTCCTGTTT i micMur3.chr8 I 130 I 2378 s proCoq1.NW_012151163v1 960375 230 + 1238772 TTTATTTTCAAAAATAGGAAG----CACATAAATTGATATCGAGAAATTCTAAATCAATGA-----------CTTTCTAAACTG--CACAGTTGA-TTTTTTCGTTAACCTCAGTATCACATTGTGAGAAATCTTCATAGGATTTGAGA---GAAAACTCTTGTGTCACAGGGTGATTTGAAGTTGGAAAAGACAAGTCAGCTGAAATAGTT-TGCAAGTCAGTTTTCCTGGTCCTAAAGTATTTCCTGTTT i proCoq1.NW_012151163v1 I 126 I 1 s otoGar3.GL873658 2538518 205 + 5252280 TTTATTTTCAAAAATATGAAG----CACATACATTGATATTGAGAAATTCTAGATCAATGA-----------CTTACTAACCTG--CA--------------------------TATGACATTTTAGGAAATGTCTATGGTATTTGAGA---GAAAACTG-TCTGTCGTAGGGTGATTTGAAGTTGGAAAAGTCAAGTCAGGTGAAGTGGTTGTGAGAGTCAGTTTTCCTGGTCCTAAGGTATTTCTTGTTT i otoGar3.GL873658 I 2 I 20 s canFam3.chr17 2043446 211 + 64289059 ATTATTTTCAGAAATAAGAAA----CACATAACTTGTTAATGAGAAATGTGAAGTTAGTGA-----------TTTTCCACACTGTACACAG-----ATGATTTG----CCTCCATATCAC--TTCAGGGCAT-TTTAT-GTACTTGAGAG-GGAATTCTA-AGTGTTCTAGG--GACTTGAGGGTGGGAGAGAAA---------CAGGAGTTCTGCAGGTTCGTTTTCCCGGCAGTGAGGCATCATGTATCT i canFam3.chr17 I 4 I 1 s dasNov3.JH580157 569419 229 + 2232271 TTTATTTTAAGAAATAGGAAGTATATATATAGCTTAATATTGAGAAATTTTTAATCGATGATGGTGTTGGTTTTTTTTTTATT-------------GTTTTTCATTAACATCCATATCACATTGGGGAAGAATTTTATAGTGTTTCAGAGAAGAAAAACC-TGAGTCTTAGGGTTATTTGAGAG---------AAAGTCAGTTGAAATGGCTTTGCGAGTTAATTCTGCTGGTCCTAAAGTATTTCATATTT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91417213 143 - 120129022 I a score=298670.000000 s hg38.chr2_KI270769v1_alt 54678 25 + 120616 CAGAATTATGCTCCTTAAATGCATA s panTro5.chr2A 3515272 25 + 111504155 CAGAATTATGCTCCTTAAATGCATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3376226 25 + 114371477 CAGAATTATGCTCCTTAAATGCATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253716 25 + 637652 CAGAATTATGCTCCTTAAATGCATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048588 25 + 81552678 CAGTATTATGCTCCTTAAATGCATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3313189 25 + 108979918 CAGTATTATGCTTCTTAAATGCATA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5024323 25 - 111193037 CAGTATTATGCGTCTTAAATGCATA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3417280 25 + 3644372 CAGTATTATGCTTCTTAAATGCATA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372751 25 - 10304083 CAGTATTATGCTTCTTAAATGCATA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461637 25 - 107702431 CAGTATTATGCTTCTTAAATGCATA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005640 25 + 1565135 CAGTATTATGCTTCTTAAATGCATA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3370016 25 - 13651311 CAGTATTATGCTTCTTAAATGCATA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456379 25 - 108792865 CAGTATTGTGCTCCTTAAATGCATA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3106200 25 - 7082604 CAGTATTATGCTTCTTAAATGCACA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591962 25 + 5243153 CAGTATTATGCTCCTTAAATGCACA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926668 25 - 1938448 CAGTATTATGCTCCTTAAATGCACA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 960606 25 + 1238772 CAGTATTGAGCTCCTTAGATGCATA i proCoq1.NW_012151163v1 I 1 I 663 s canFam3.chr17 2043658 18 + 64289059 CACTATTGAGCCCCTTAA------- i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 569648 25 + 2232271 TGTTACTAAACTCCTTATGTGCAAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e otoGar3.GL873658 2538723 20 + 5252280 I a score=34928.000000 s hg38.chr2_KI270769v1_alt 54703 3 + 120616 CTA s panTro5.chr2A 3515297 3 + 111504155 CTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3376251 3 + 114371477 CTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253741 3 + 637652 CTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048613 3 + 81552678 CTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3313214 3 + 108979918 CTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5024348 3 - 111193037 CTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3417305 3 + 3644372 CTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372776 3 - 10304083 CTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461662 3 - 107702431 CTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005665 3 + 1565135 CTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3370041 3 - 13651311 CTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456404 3 - 108792865 CTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3106225 3 - 7082604 CTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591987 3 + 5243153 CTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926693 3 - 1938448 CTA i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 569673 3 + 2232271 ATA i dasNov3.JH580157 C 0 I 34 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2043676 0 + 64289059 C e proCoq1.NW_012151163v1 960631 663 + 1238772 I e otoGar3.GL873658 2538723 20 + 5252280 I a score=576528.000000 s hg38.chr2_KI270769v1_alt 54706 61 + 120616 CAGgctgggtacaggggctcatgcctgtaatcccagctacttgggaggctgaggcatgaga s panTro5.chr2A 3515300 61 + 111504155 CAGgctgggtacaggggctcatgcctgtaatcccagctacttgggaggctgaggcatgaga i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3376254 61 + 114371477 CAGgctgggtacaggggctcatgcctgtaatcccagctacttgggaggctgaggcatgaga i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253744 61 + 637652 CAGgctgggcgcaggggctcatgcctataatcccagctacttgggaggctgaggcatgaga i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048616 61 + 81552678 CAGgctgggtgcaggggctcatgcctgtaatcccagctacctgggaggctgaggcatgaga i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3313217 61 + 108979918 CAGgctgggtgcaggggctcatgcctgtaatcccagctactcgggaggctgaggcatgaga i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5024351 61 - 111193037 CAGgctgggtgcaggggctcatgcctgtaatcccagctactcgggaggctgaggcatgaga i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3417308 61 + 3644372 CAGgctgggtgcaggggctcatgcctgtaatcccagctactcgggaggctgaggcatgaga i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372779 61 - 10304083 CAGgctgggtgcaggggctcatgcctgtaatcccagctactcgggaggctgaggcatgaga i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461665 61 - 107702431 CAGgctgggtgcaggggctcatgcctgtaatcccagctcctcgggaggctgaggcatgaga i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005668 61 + 1565135 CAGCctgggtgcagggactcatgcctgtaatcccagctactcgggaggctgaggcatgaga i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3370044 61 - 13651311 CAGgctgggtgcaggggctcatgcctgtaatcccagctactcgggaggctgaggcatgaga i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456407 61 - 108792865 CCGgctgggcgcagaggttcatgcctgtaacctcacctcctcagaaggctgaggcacaaaa i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3106228 60 - 7082604 CAGgctgggcgcagaggctcatgcctgcaacctcagctactcggaaggctgtggcac-aaa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 591990 60 + 5243153 CAGgctgggcgcagaggctcatgcctgtaacctcagctactca-aaggctgagacacaaaa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926696 61 - 1938448 CAGgctgggcgcagaggctcatgcctgtaacctcagctactcagaaggctgaggcacaaaa i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2043676 8 + 64289059 -----------------------------------------------------GCACGGGA i canFam3.chr17 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 960631 663 + 1238772 I e dasNov3.JH580157 569676 34 + 2232271 I e otoGar3.GL873658 2538723 20 + 5252280 I a score=971281.000000 s hg38.chr2_KI270769v1_alt 54767 105 + 120616 atcgcttgaacccaggaggctgaggttgcagtaagccgagatcaagccactgcactccagtctgggcaacagagcaagactctgtctc-aaaaaaa------aagaaaaaCT s panTro5.chr2A 3515361 105 + 111504155 atcgcttgaacccaggaggctgaggttgcagtaagccgagatcaagccactgcactccagtctgggcaacagagcaagactctgtctc-aaaaaaa------aagaaaaCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3376315 105 + 114371477 atcgcttgaacccaggaggctgaggttgcagtaagccgagatcaagccactgcactccagtctgggcaacagagcaagactctgtctc-aaaaaaa------aagaaaaCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253805 105 + 637652 atcgcttgaacccaggaggctgaggttgcagtaagccgagatcaagccactgcactccagtctgggcaacagagcaagactctgtctc-aaaaaaa------aagaaaaaCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048677 103 + 81552678 atcgcttgaacccaggaggctgaggttgcagtaagccgagatcaagccactgcactccagtctgggcaacagagcaagactctgtctc-aaaataa------a--aaaaaCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3313278 108 + 108979918 atcgcttaaacccaggaggctgaggttgcagtaagccgagatcaagccactgcactccaatctgggcaacagagcaagactctgtctc-aaaaaag---gaaaaaaaaaaCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5024412 109 - 111193037 atcgcttaaacccaggaggctgaggttgcagtaagccgagatcaagccactgcactccaatctgggcaacagagcaagactctgtctc-aaaaaag--aaaaaaaaaaaaCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3417369 109 + 3644372 atcgcttaaacccaggaggctgaggttgcagtaagccgagatcaagccactgcactccaatctgggcaacagagcaagactctgtctc-aaaaaag--aaaaaaaaaaaaCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372840 106 - 10304083 atcgcttaaacccaggaggctgaggttgcagtaagccgagatcaagccactgcactccagtctgggcaacagagcaagactctgtctc-aaaaaag--agaaaaaaaaa--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461726 108 - 107702431 atcacttaaacccaggaggctgaggttgcagtaagccgaaatcaagccactgcactccagtgtgggcaacagagcaagactctgtctc-aacaaag---aaaaaaaaaaaCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005729 107 + 1565135 atcgcttaaacccaggaggctgaggttgcagtaagccgagatcaagccactgcactccagtctgggcaacagagcaagactctgtctc-aaaaaag----aaaaaaaaaaCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3370105 110 - 13651311 atcgcttaaacccaggaggctgaggttgcagtaagccgagatcaagccactgcactccagtctaggcaacagagcaagactctgtctc-aaaaaaga-aaaaaaaaaaaaTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456468 102 - 108792865 atcacttgaacccaggaggctgaggttgcagtaagccgagatcgagccactgcactccagtctgggcagcagagtgagactcCCCCCC----------CCCCCCGCAAAAAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3106288 111 - 7082604 atcacttgaacccaggaggctgaggttgcagtaagccgacaccgagccactgcactccagtctgggcaacagagtgagactctatctc-aaaaaaaaaaaaaaaaaaaaaaa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 592050 112 + 5243153 atcacttgaaccctggaggctgaggttgcaggaagccgagatcgagccactgcactccagtctgggcaacagagtgagactctgtctaaaaaaaaaaaaaaaaaaaaaaaaT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926757 101 - 1938448 atcacttcaacccaggaggctgaggttgcagtaagccgagatcgagccactgcactccagtctgggcaacagagtgagactctgtctc-----------aaaaaaataaaaT i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2043684 0 + 64289059 C e proCoq1.NW_012151163v1 960631 663 + 1238772 I e dasNov3.JH580157 569676 34 + 2232271 I e otoGar3.GL873658 2538723 20 + 5252280 I a score=61002.000000 s hg38.chr2_KI270769v1_alt 54872 6 + 120616 GCATAC s panTro5.chr2A 3515466 6 + 111504155 GCATAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3376420 6 + 114371477 GCATAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253910 6 + 637652 GCATAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048780 6 + 81552678 GCATAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3313386 6 + 108979918 GTATAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5024521 6 - 111193037 GTATAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3417478 6 + 3644372 GTATAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372946 6 - 10304083 GTATAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461834 6 - 107702431 GCATAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005836 6 + 1565135 GTATAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3370215 6 - 13651311 GCATAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456570 6 - 108792865 GCATAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3106399 6 - 7082604 GCATAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 592162 6 + 5243153 GCGTAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926858 6 - 1938448 CCATAC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2538743 6 + 5252280 GCATAA i otoGar3.GL873658 I 20 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2043684 0 + 64289059 C e proCoq1.NW_012151163v1 960631 663 + 1238772 I e dasNov3.JH580157 569676 34 + 2232271 I a score=1632287.000000 s hg38.chr2_KI270769v1_alt 54878 177 + 120616 TACAGTGTAACGATGAGAGGAGCCACTTAGCACTAGCTATGAAGCA----------GCAGGGACG------------GTGGAGCAGAGAGCAGGAGCT---TCCCACACCG---CTGCTCTGGGCACC-TGCACTTACTCCACCTGACAGACacctttgttgcattcattatgaggcagccactgct-ctgag-----ttccaatattaact s panTro5.chr2A 3515472 177 + 111504155 TACAGTGTAACGATGAGAGGAGCCACTTAGCACTAGCTATGAAGCA----------GCAGGGACG------------GTGGAGCAGAGAGCAGGAGCT---TCCCACACCG---CTGCTCTGGGCACC-TGCACTTACTCCACCTGACAGACacctttgttgcattcattatgaggcagccactgct-ctgag-----ttccaatattaact i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3376426 177 + 114371477 TACAGTGTAACGATGAGAGGAGCCACTTAGCACTAGCTATGAAGCA----------GCAGGGACG------------GTGGAGCAGAGAGCAGGAGCT---TCCCACACCG---CTGCTCTGGGCACC-TGCACTTACTCCACCTGACAGACacctttgttgcattcattatgaggcagccactgct-ctgag-----ttccaatattaact i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 253916 177 + 637652 TACAGTGTAACGATGAGAGGAGCCACTTAGCACTAGCTATGAAGCA----------GCAGGGACG------------GTGGAGCAGAGAGCAGGAGCT---TCCCACATCG---CTGCTCCGGGCACC-TGCACTTACTCCACCTGACAGACacctttgttgcattcattatgaggcagccactgct-ctgag-----ttccaatattaact i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3048786 177 + 81552678 TACAGTGTAACGATCAGGGGAGCCACTTAGCACTAGCTGTGAAGCA----------GCAGGGACA------------GTGGAGCAGAGGGCAGGAGCT---TCCCACACTG---CTGCTCCGGGCACC-TGCACTGACTCCACCTGACAGACacctttgtggaattcattatgagccagccactgct-ctgag-----ttccaatattaact i nomLeu3.chr19 C 0 I 1333 s rheMac8.chr13 3313392 177 + 108979918 TACAGTGTAGCGATCAGGGGAGCCACTTAGCACTAGCTGTGAAGCA----------GCAGGGACA------------GTGGAGCAGAGAGCAGGAAAT---TCCCACACAG---CTGCTCCAGGCACC-TGCACCCACTCCACCCGACAGACTCCTTTGTCgcattcattatgagccagccactgct-ctgag-----ttccaacattaact i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5024527 177 - 111193037 TACAGTGTAGCGATCAGGGGAGCCACTTAGCACTAGCTGTGAAGCA----------GCAGGGACA------------GTGGAGCAGAGAGCAGGAAAT---TCCCACACCG---CTGCTCCAGGCACC-TGCACCCACTCCACCCGACAGACTCCTTTGTCgcattcattatgagccagccactgct-ctgag-----ttccaacattaact i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3417484 177 + 3644372 TACAGTGTAGCGATCAGGGGAGCCACTTAGCACTAGCTGTGAAGCA----------GCAGGGACA------------GTGGAGCAGAGAGCAGGAAAT---TCCCACACTG---CTGCTCCAGGCACC-TGCACCCACTCCACCCGACAGACTCCTTTGTCgcattcattatgagccagccactgct-ctgag-----ttccaacattaact i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3372952 177 - 10304083 TGCAGTGTAGCGATCAGGGGAGCCACTTAGCACTAGCTGTGAAGCA----------GCAGGGACA------------GTGGAGCAGAGAGCAGGAGCT---TCCCACACCA---CTGCTCCAGGCACC-TGCACCCACTCCACTCGACAGACTCCTTTGTCgcattcattatgagccagccactgct-ctgag-----ttccaacattagct i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3461840 177 - 107702431 TACAGTGTAGCGATCAGGGGAGCCACTTAGCACTAGCTGTGAAGCA----------GCAGGGACA------------GTGGAACAGAGAGCAGGAGCT---TCCCACACCG---CTGCTCCAGGCACC-TGCACCCACTCCACCCGACAGACTCCtttgttgcattcattatgagccagccactgct-ctgag-----ttccaacattagct i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1005842 177 + 1565135 TACAGTGTAGCGATCAGGGGAGCCACTTAGCACTAGCTGTGAAGCA----------GCAGGGACA------------GTGGAGCAGAGAGCAGGAGCT---TCCCACACCG---CTGCTCCAGGCACC-TGCACCCACTCCACCCGACAGACTCCTTTGTCgcattcattatgagccagccactgct-ctgag-----ttccaacgttagct i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3370221 177 - 13651311 TACAGTGTAGCGATCAGGGGAGCCACTTAGCAGTAGCTGTGAAGCA----------GCAGGGACA------------GTGGAGCAGAGAGCAGGAGCT---TCCCACACGG---CTGCTCCAGGCACC-GGCACCCACTCCACCTGACAGACTCCTTTGTCgcattcattatgagccagccactgct-ccgag-----ttccaacattaact i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456576 174 - 108792865 TCCAGGGTAACACTCAG-GGAGCCACTCAGCACCAGCTGCACAGCA----------GCAGGGACA------------GTGTAACAGAGAGCAGGAACT---TCCCACACCG---CTGC-CCAGGCACC--GCACTTACTCCACCTGACAGACACCTATGCCACATTTGTGCtgagccagccactgct-ctgag-----ttccagtatcaact i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3106405 162 - 7082604 TCCAGTGTAACGCTCAG-GGAGCCACTCA-----------ACAGCA----------GCAGGGACA------------GTGGAACAGAGAGCAGGCGCT---TCCCACAGTA---CTG--CCAGGCACC--ACACTTACTCTGCCTGACAGACACCTGTGCCAcgttcacgatgatccagccactgct-ctgag-----ttccaatatcaact i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 592168 169 + 5243153 TCCAGTGTAGCACTCAG-GGAGCCACTCAGCACCAGCTGTGCAGCA----------GCAG----A------------GTGGGACAGAGAGCAGAAGCT---TCCCACACCA---CTG--CCAGGCACT--GCACTTACTCCACCCGACAGacacctatgccacattcatgatgagccagccactgct-ctgag-----ttccagtatcaact i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1926864 174 - 1938448 TCCAGTGTAACGCTCAG-GGAGCCACTCAGCACCAGCTGCACAGCA----------GCAGGGACA------------GTGGAACAGAGAGCAGGAGCT---TCCCACACCA---CTGC-CCAGGCACC--GCACTCACTCCTCCtgacagacacctatgccacattcatgatgagccagccactgct-ctgag-----ttccaatatcaact i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2538749 201 + 5252280 TACTGTGTAACCATCAGAAGATCCACTTAGCACCTGCTATGGAGCAGGCTGTGGGGGCAGGGGGAGAGAATGGGGGGGTGCAGTGGAGAGTGGGGGATGAGGCAGACAGTGGGCCTGTCCAGGCTACC--------GCTGTGCTTCTTGGACACTTagcgtgtactca---tgagtcagccactgttgctaagcagttttcagaccttagct i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2043684 132 + 64289059 TGCAGGGTAATGATGGGAGGGG------------------AAGGCA----------G--------------------GT-----------------CT---TCTGCCACCA---CTGCTCTAGGCTCCTTGTACTCGTTGTACTAAACACA--------TTgtgtttgctggaaaccagtctctggt-cctaagcatttttcaattatagct i canFam3.chr17 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 960631 663 + 1238772 I e dasNov3.JH580157 569676 34 + 2232271 I a score=880473.000000 s hg38.chr2_KI270769v1_alt 55055 84 + 120616 catttaatcctt----------------atcacaaccctatgaa-ggagatgtt---attatcccaatttacagatggggaaact---gaggcacagataggttagg s panTro5.chr2A 3515649 84 + 111504155 catttaatcctt----------------atcacaaccctatgaa-ggagatgtt---attatcccaatttacagatggggaaact---gaggcacggagaggttagg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3376603 84 + 114371477 catttaatcctt----------------atcacaaccctatgaa-ggagatgtt---attatcccaatttacagatggggaaact---gaggcacggagaggttagg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 254093 84 + 637652 catttaatccta----------------atcacaaccctatgaa-ggagatgtt---attatcccaatttacagatggggaaact---gaggcacggagaggttagg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3050296 84 + 81552678 catttaatcctt----------------atcacaaccctacgaa-ggagatgtt---attatcccaatttacagatggggaaact---gaggcacggagaggttagc i nomLeu3.chr19 I 1333 C 0 s rheMac8.chr13 3313569 84 + 108979918 catttaatcctt----------------atcacaaccgtatgaa-ggagatgtt---attatcccagtttacagatggggagact---gaggcatggagaggttagc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5024704 84 - 111193037 catttaatcctt----------------atcacaaccctatgaa-ggagatgtt---attatcccagtttacagatggggagact---gaggcatggagaggttagc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3417661 84 + 3644372 catttaatcctt----------------atcacaaccctatgaa-ggagatgtt---attatcccagtttacagatggggagact---gaggcatggagaggttagc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3373129 84 - 10304083 catttaatcctt----------------atcacaaccctatgaa-ggagatgtt---attatcccagtttacagatggggaaact---gaggcatggagaggttagc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3462017 84 - 107702431 catttaatcctt----------------atcacaaccctatgaa-ggacatgtt---gttatcccagtttacagatggggaaact---gaggcatggagaggttagc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1006019 84 + 1565135 catttaatcctt----------------atcacaaccctatgaa-ggagatgtt---attatcccagtttacagatggggagact---gaggcatggagaggttagc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3370398 79 - 13651311 catttaatcctt----------------atcacaaccgtatgaa-ggagatgtt---gttatcccagtttacagatggggaaact---gaggcat-----cctaagc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456750 84 - 108792865 catctaatcctt----------------ataacaaccctgtaaa-ggacatgtt---gttatcccagtttacacatggggaaact---gaggcacagagtgcttagc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3106567 84 - 7082604 catttagtcctt----------------gtaactaccctgtgaa-ggagatgtt---attaccccagtttacatatggggaaact---gaggcatggagtgcttagc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 592337 84 + 5243153 catttaatcctt----------------ataacaaccctgtgaa-ggagatgtt---attatcccagtttacacatggggaaact---gaggcacagagtgcttatc i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1927038 84 - 1938448 catttaatccgt----------------ataacaaccctgtgaa-ggcgatgtt---attatcccagtttatacatggggaaact---gaggcatggagtgcttagc i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2538950 85 + 5252280 cactgaatcctt----------------at-acatccctaggaa-ggaggtgggggagtcttcccagtttacatctggggaaact---gaggcat-gagagggcagg i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2043816 103 + 64289059 tatttaatccttacacacctatgtaaggattaaaaccctatgactaggggttcc---attacccca-cttacagctgagcgacctgaggaggcacagagaggctgac i canFam3.chr17 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 960631 663 + 1238772 I e dasNov3.JH580157 569676 34 + 2232271 I a score=1838617.000000 s hg38.chr2_KI270769v1_alt 55139 232 + 120616 taactt----aggatcacatgagttgaacccaagtcatctggctctaaagtccatgc---tcttcatc---actTGCCTGGCTTCATCACTATAACATGTCCCGTTTGAAGACAGAAGGACCGAGAGTCCTCTCTTCCACCCTGCACCAGCATTTCTGCTCCA---AGAAAGGACAGTGCTGTCCGGGGTCAACTGACATCTGCTCAGAAGACCCCTGTGCTGAATG-GGGCCCTGCCCCT------TCCCC s panTro5.chr2A 3515733 232 + 111504155 taactt----aggatcacatgagttgaacccaagtcatctggctctaaagtccatgc---tcttcatc---actTGCCTGGCTTCATCACTATAACATGTCCCGTTTGAAGAGAGAAGGACCGAGAGTCCTCTCTTCCACCCTGCACCAGCATTTCTGCTCCA---AGAAAGGACAGTGCTGTCCGGGGTCAACTGACATCTGCTCAGAAGACCCCTGTGCTGAATG-GGGCCCTGCCCCT------TCCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3376687 232 + 114371477 taactt----aggatcacatgagttgaacccaagtcatctggctctaaagtccatgc---tcttcatc---actTGCCTGGCTTCATCACTATAACATGTCCCGTTTGAAGAGAGAAGGACCGAGAGTCCTCTCTTCCACCCTGCACCAGCATTTCTGCTCCA---AGAAAGGACAGTGCTGTCCGGGGTCAACTGACATCTGCTCAGAAGACCCCTGTGCTGAATG-GGGCCCTGCCCCT------TCCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 254177 232 + 637652 taactt----aggatcacatgagttgaacccaagtcatctggctctaaagtccatgc---tcttcatc---actTGCCTGGCTTCATCACTATAACATGTCCCGTTTGAAGAGAGAAGGACCGAGAGTCCTCTCTTCCACCCTGCACCGGCATTTCTGCTCCA---AGAAAGGACAGTGCTGTCCGGGGTCAACTGACATCTGCTCAGAAGACCCCAGTGCTGAATG-GGGCCCTGCCCCT------TCCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3050380 235 + 81552678 taactt----aggatcacttgagttgaacccaagtcatctggctctagagtccatgc---tct---tc---acTTGCGCGGCTTCATCACTATAACATGTCCCGTTTGAAGGGAGAAGAACCGAGAGTCCTCTCTTCCACCCTGCACCAGCATTTCTGCTCCA---AGAAAGGACAGTGCTGTCCGGGATCGACTGACATCTGCTCAGAAGACCCCTGTGCTGAATG-GGGCCCTGCCCCTTCCCCCTCCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3313653 212 + 108979918 caactt----aggatcacattagttgaacccaagtcgtctggctctagagtccatgc---tcgtcatc---actCGCCTGCCTCCATCACTGTAATGTGTCCCGTTTGAAGGGAGAAGGACCGAGAGTCCTCTCTT-CATTCTGCACCAGCATTTCTGCTCCA---AGGAAGGACAGTGCTGTCCGGGGTCAACTGACATCTGCTCAGAAGACCCCTGTGCT-------------------------T-CCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5024788 212 - 111193037 caactt----aggatcacatgagttgaacccaagtcgtctggctctagagtccatgc---tcgtcatc---actCGCCTGCCTCCATCACTGTAATGTGTCCCGTTTGAAGGGAGAAGGACCGAGAGTCCTCTCTT-CATTCTGCACCAGCATTTCTGCTCCA---AGGAAGGACAGTGCTGTCCGGGGTCAACTGACATCTGCTCAGAAGACCCCTGTGCT-------------------------T-CCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3417745 212 + 3644372 caactt----aggatcacatgagttgaacccaagtcgtctggctctagagtccatgc---tcgtcatc---actCGCCTGCCTCCATCACTGTAATGTGTCCCGTTTGAAGGGAGAAGGACCGAGAGTCCTCTCTT-CATTCTGCACCAGCATTTCTGCTCCA---AGGAAGGACAGTGCTGTCCGGGGTCAACTGACATCTGCTCAGAAGACCCCTGTGCT-------------------------T-CCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3373213 212 - 10304083 caactt----aggatcacatgagttgaacccaagtcgtctggctctagagtccatgc---tcatcatc---actCGCCTGCCTCCGTCACTGTAATGTGTCCCGTTTGAAGGGAGAAGGACCAAGAGTCCTCTCTT-CATTCTGCACCAGCATTTCTGCTCCA---AGGAAGGACAGTGCTGTCCGGGGTCAACTGACATCTGCTCAGAAGACCCCTGTGCT-------------------------T-CCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3462101 213 - 107702431 caactt----aggatcacatgagttgaacccaagtcatctggttctagagtccatgc---tcgtcatc---actCGCCTGCCTCCATCACTGTAATGTGTCCCGTTTGAAGGGAGAAGGACCGAGAGTCCTCTCTT-CCTTCTGCACCAGCATTTCTGCTCCA---AGGAAGGACAGTGCTGTCCGGGGTCAACTGACATCTGCTCAGAAGTCCCCTGTGCT-------------------------TCCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1006103 213 + 1565135 caactt----aggatcacatgagttgaacccaagtcgtctggctctagagtccatgc---tcatcatc---actCGCCTGCCTCCGTCACTGTAATGTGTCCCGTTTGAAGAGAGTAGGACCAAGAGTCCTCTCTT-CACCCTGCACCAGCATTTCTGCTCCA---AGGAAGGACAGTGCTGTCCGGGGTCAACTGACATCTGCTCAGAAGACCCCTGTGCT-------------------------TCCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3370477 216 - 13651311 caactt----aggatcacatgagctgaacccaagccgcctggctctagagtccgtgctcttcttcatc---actcgcctgcctccgTCACTGTCATGTGTCCCGTTTGAAGGGAGAAGGACCGAGAGTCCTCTCTT-CACCCTGCACCAGCATTTCTGCTCCA---AGGAAGGACAGTGCTGTCCAAGGTCAACTGACATCTGCTCAGAAGACCCCTGTGCT-------------------------TCCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3456834 204 - 108792865 taaccgactcatgatcatg--agttgaacccaagtcatctggctctagagcccatac---t------------------gcctttgtcactgtAACGTGTCCCATTTGAAGGAAGGAAGACT--AAATCCTCTCTTCCACCCTGTACTTGTATTTCTGCTCCA---AGGAAGTACAGTGCTGTTAGGGGTCGCTGGACA--------------CCCCGTGCTGAGTGGGGACACTGCCCCT------TCCCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3106651 235 - 7082604 taacttactcaggattacc--agttgaacccaagtcatctggctctagagcctgtgc---tcttcatc---actTGCCCGCCTTCATCACTGTAACGTGTCCCGTTTGAAGGAAGGAAGACTGAGAGTCCTCTCTTCCACCCTGTACCAGCATTTCTGCTCCA---AGAAAGGACAGTGCTGTTCGGGGTCCCTGGACACCTACACAAAAGACCCCTGTGCTGAGTGTGGGTACTGCCCCT------TCCCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 592421 234 + 5243153 taacttactcaggatcacc--agttgaacccaagtcatctggctgtagagcccatgc---tcttcatc---actTGCCGGCTTTCATCACTGTAATGTGTCCCGTTTGAAGGCAGGAAGGCTGAGAGTCCTCTCTTCCACCCTGTACCAGTATTTCTGCTCCA---AGGAAGGACAGTGCTGTTCGGGGTCGCTGGACACCTACACAAAAGC-CCCCGTGCTGAGTGGGGGCACTGCCCCT------TACCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1927122 220 - 1938448 taacttactcaggatcaca--agttgaacccaagtcatctggctccagagcccatac---t------------------gccttcatcactgtAACATGTCCCATTTGAAGGAAGGAAGACTGAGAGTCCTCTCTTCCACCCTGTACCAGTATTTCTGCTCCA---AGGAAGGACAGTGCTGTTCGAGGTCGCTGGACATCTACACAAAAGACCCCCGTGCTGAGTGGGGGCACTGCCCCT------TCCCA i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2043919 187 + 64289059 ttgccc----gtgatcacataatttg-acccaagttgtccagctgtggggtctgtgc---tcaaaatcaAAACCTGCCC-------TCCCTGTGCCATGTCCCAGTTGAAATGAGAAAGGCCTAAGATCTTC-----CTCCCCATGCCAGCATCTCTGCTCCGTCCAGTAGGAACACGTCTCACTGTGATCGA---------------AATGCCCTC------------------------------TCGCA i canFam3.chr17 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 960631 663 + 1238772 I e dasNov3.JH580157 569676 34 + 2232271 I e otoGar3.GL873658 2539035 0 + 5252280 C a score=5764338.000000 s hg38.chr2_KI270769v1_alt 55371 588 + 120616 CTGACTGATGCCTGGAGATGGGCTCGAGCCTGTGCTCTGCTGGGCTGGG-CCCTCCTGAGACTCTTGAGGGGGCTT-------------CCAAGCAAC-AGCAGTTGACAGCTAAGCATCG-TAGGGTTGGGGAGAAACGAGAAGGGTTAGTGCAGTCACATCCTAGGAACGTTTCTCTCAGGCTGAC-----TGG---------------------GCGT--------------GGGGCCACCGTCA----------GTGAGAGAGCCACT-----------CATGCTTCTCgttccctccgctggtctacagttccacctgcctctca-tcttgtg-aatacataaccgcacttcaggtatctctcatgttt-aaagata-catatcttttccatggcatga-tccaaatctaagccaacactccttatggtacttaaatgaggaaatcgcaattcgttctaatcctggaagaaaaacaagcagttggatttatgaaaaggtgtgtgttggtcttcaccttaaaggattttcaccgttaatttcaatatgtaattactatgtgttcctttatgtgctgacttaaaatttgacac--cctcttgagaGAGAGAGCTGCACTGTGGCACAGCTGGTGGATGCCTGGACCAAGAGGGAA------AGACCCAGGGCATG s panTro5.chr2A 3515965 588 + 111504155 CTGACTGATGCCTGGAGATGGGCTCGAGCCTGTGCTCTGCTGGGCTGGG-CCCTCCTGAGACTCTTGAGGGGGCTT-------------CCAAGCAAC-AGCAGTTGACAGCTAAGCATCG-TAGGGTTGGGGAGAAACCAGAAGGGTTAGTGCAGTCACATCCTAGGAACGTTTCTCTCAGGCTGAC-----TGG---------------------GCGT--------------GGGGCCACCGTCA----------GTGAGAGAGCCACT-----------CATGCTTCTCgttccctccgctggtctacagttccacctgcctctca-tcttgtg-aatacataaccgcacttcaggtatctctcatgttt-aaagata-catatcttttccatggcatga-tccaaatctaagccaacactccttatggtacttaaatgaggaaatcgcaattcgttctaatcctggaagaaaaacaagcagttggatttatgaaaaggtgtgtgttggtcttcaccttaaaggattttcaccgttaatttcaatatgtaattactatgtgttcctttatgtgctgacttaaaatttgacac--cctcttgagaGAGAGAGCTGCACTGTGGCACAGCTGGTGGATGCCTGGACCAAGAGGGAA------AGACCCAGGGCATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3376919 570 + 114371477 CTGACTGAT------------------GCCTGTGCTCTGCTGGGCTGGG-CCCTCCTGAGACTCTTGAGGGGGCTT-------------CCAAGCAAC-AGCAGTTGACAGCTAAGCATCG-TAGGGTTGGGGAGAAACCAGAAGGGTTAGTGCAGTCACATCCTAGGAACGTTTCTCTCAGGCTGAC-----TGG---------------------GCGT--------------GGGGCCACCGTCA----------GTGAGAGAGCCACT-----------CATGCTTCTCgttccctccgctggtctacagttccacctgcctctca-tcttgtg-aatacataaccgcacttcaggtatctctcatgttt-aaagata-catatcttttccatggcatga-tccaaatctaagccaacactccttatggtacttaaatgaggaaatcgcaattcgttctaatcctggaagaaaaacaagcagttggatttatgaaaaggtgtgtgttggtcttcaccttaaaggattttcaccattaatttcaatatgtaattactatgtgttcctttatgtgctgacttaaaatttgacac--cctcttgagaGAGAGAGCTGCACTGTGGCACAGCTGGTGGATGCCTGGACCAAGAGGGAA------AGACCCAGGGCATG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 254409 588 + 637652 CTGACTGATGCCTGGAGATGGGCTTGAGCCTATGCTCTGCTGGGCTGGG-CCCTCCTGAGACTCTTGCGGGGGCTT-------------CCAAGCAAC-AGCAGTTGACAGCTAAGCATCG-TGGGGTTGGGGAGAAATCAGAAGGGTTAGTGCAGTCACATCCTAGGAACGTTTCTCTCAGGCTGAC-----TGG---------------------GCAT--------------GGGGCCACCGTCA----------GTGAGAGAGCCACT-----------CATGCTTCTCgttccctccgctggtctacagttccacctgcctctca-tcttgtg-aatacatcaccgtacttcaggtatctctcatgttt-aaagata-catatcttttccatggcatga-tccaaatctaagctaacactccttatggtacttaaatgaggaaatcgcaattcgttctaatcctggaagaaaaacaagcagttggatttatgaaaaggtgtgtgttggtcttcaccttaaaggattttcaccgttaatttcaatatgtaattactatgtgttcctttatgtgctgacttaaaatttgacac--cctcttgagaGAGAGAGCTGCACGGTGGCACAGCTGGTGGATGCCTGGACCAAGAGGGAA------AGACCCAGGGCATG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3050615 588 + 81552678 CTGACTGATGTCTGGAGATGGGCTCGAGTCTGTGCTCTGCTGGGCTGGG-CCCTCCTGAGACTCTTGCAGGGGCTT-------------CCAAGCAAC-AGCAGTTGACAGCTAGGCATCG-TGGGGTTGGGGAGAAACCAGAAGGGTTAGTGCAGTCACATCCTAGGAACATTTCTCTCAGGCTGAC-----TGG---------------------GCCT--------------GGGGCCACCGTCA----------GTGAGAGAGCCACT-----------CATGCTTCTCAttccctccgctggtctacagttccacctgcctctcg-tcgtgtg-aatacatcaccacacttcaggcatctctcatgttt-aaagata-catattttttccatggcatga-tccaaatataagccagcattccttatggtacttaaatgaggaaatcgcagtttgttctaatcctggaagaaaaacaagcagttggatttatgaaaaggtgtgtgttggtcttcaccttaaaggattttcacagttaatttcaatatgtaattactatgtgttcctttatgtgccgacttaaaatttgacac--cctcttgagaGAGAGAGCTGCACTGTGGCACAACTGGTGGATGCCTGGACCAAGAGGGAA------AGACCCAGGGCATG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3313865 586 + 108979918 CTGACTGATGCCT-GAGATGGGCTCGAGCCTGTGTTCTGCT-GGCTGGG-CCCTCCTGAGACTCTTGCGGGGGCTT-------------CCAGGCAAC-AGCAGTTGACAGCTACGCATTG-AGGGGTTGGGGAGAAACCAGAAGGATCAGTGCAGTCACATCCTAGGAACATTTCTCTCAGGCTGAC-----TGG---------------------GCTT--------------GGGGCCACCATCA----------GTGAGAGAGCCACT-----------CATGCTTCTCgttccctccgctagtctaccgttccacctgcctctca-gcgtgtg-aatacatcaccacacttcaggcatctctcatgttt-acagata-catattttttctatggcatga-tccaaatataagccagcattccttgtggtacttaattgaggaaatcgcaatttgttctaatcctggaagaaaaacaagcagttggatttatgaaaagatgtgtgttggtcttcaccttaaaagattttcatggttaatttcaatatgtaattactatgtgttcctttatatgctgacttaaaatttgacac--cctcttgagaGAGAGAGCTGCACTGTGGCACAGCTGGTGGATGCCTGGACCACGAGAGAA------AGACCCAGGGCGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5025000 586 - 111193037 CTGACTGATGCCT-GAGATGGGCTCGAGCCTGTGTTCTGCT-GGCTGGG-CCCTCCTGAGACTCTTGCGGGGGCTT-------------CCAGGCAAC-AGCAGTTGACAGCTACGCATTG-AGGGGTTGGGGAGAAACCAGAAGGATCAGTGCAGTCACATCCTAGGAACATTTCTCTCAGGCTGAC-----TGG---------------------GCTT--------------GGGGCCACCATCA----------GTGAGAGAGCCACT-----------CATGCTTCTCgttccctccgctagtctaccgttccacctgcctctca-gcgtgtg-aatacatcaccacacttcaggcatctctcatgttt-acagata-catattttttctatggcatga-tccaaatataagccagcattccttgtggtacttaattgaggaaatcgcaatttgttctaatcctggaagaaaaacaagcagttggatttatgaaaagatgtgtgttggtcttcaccttaaaagattttcatggttaatttcaatatgtaattactatgtgttcctttatatgctgacttaaaatttgacac--cctcttgagaGAGAGAGCTGCGCTGTGGCACAGCTGGTGGATGCCTGGACCACGAGAGAA------AGACCCAGGGCGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3417957 586 + 3644372 CTGACTGATGCCT-GAGATGGGCTCGAGCCTGTGTTCTGCT-GGCTGGG-CCCTCCTGAGACTCTTGCGGGGGCTT-------------CCAGGCAAC-AGCAGTTGACAGCTACGCATTG-AGGGGTTGGGGAGAAACCAGAAGGATCAGTGCAGTCACATCCTAGGAACATTTCTCTCAGGCTGAC-----TGG---------------------GCTT--------------GGGGCCACCATCA----------GTGAGAGAGCCACT-----------CATGCTTCTCgttccctccgctagtctaccgttccacctgcctctca-gcgtgtg-aatacatcaccacacttcaggcatctctcatgttt-acagata-catattttttctatggcatga-tccaaatataagccagcattccttgtggtacttaattgaggaaatcgcaatttgttctaatcctggaagaaaaacaagcagttggatttatgaaaagatgtgtgttggtcttcaccttaaaagattttcatggttaatttcaatatgtaattactatgtgttcctttatatgctgacttaaaatttgacac--cctcttgagaGAGAGAGCTGCGCTGTGGCACAGCTGGTGGATGCCTGGACCACGAGAGAA------AGACCCAGGGCGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3373425 585 - 10304083 CTGACTGATGCCT-GAGATGGGCTCGAGCCTGTGCTCTGCT-GGCTGGG-CCCTCCTGAGACTCTTGCGGGGGCTT-------------CCAGGCAAC-GGCAGTTGACAGCTACGCATTG-A-GGGTTGGGGAGAAACCAGAAGGATCAGTGCAGTCACCTCCTAGGAACATTTCTCTCAGGCTGAC-----TGG---------------------GCGT--------------GGGGCCACCGTCA----------GTGAGAGAGCCGCT-----------CATGCTTCTtgttccctccgctagtctgccgttccacctgcctctca-gcgtgtg-aatacatcaccacacgtcacgcatctctcatgttt-acagata-catattttttctatggcgtga-tccaaatataagccagcattccttgtggtacttaattgaggaaatcgcaatttgttctaatcctggaagaaaaacaagcagttggatttatgaaaagatgtgtgttggtcttcaccttaaaggattttcatggttaatttcaatatgtaattactatgtgttcctttatatgctgacttaaaatttgacac--cctcttgagaGAGAAAGCTGCGCTGTGGCACAGCTGGTGGATGCCTGGACCACGAGAGAA------AGACCCAGGGCGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3462314 587 - 107702431 CCAACTGATGCCT-GAGATGGGCTCGAGCCTGTGCTCTGCT-GGCTGGG-CCCTCCTGAGACTCTTGCGGGGGCTT-------------CCAGGCAAC-AGCAGTTGACAGCTACGCATTG-AGGGGTTGGGGAGAAACCAGAAGGATCAGTGCAGTCACCTGCTAGGAACATTTCTCTCAGGCTGAC-----TGG---------------------GCTT--------------GGGGCCGCCGTCA----------GTGAGAGAGCCACT-----------CATGCTTCTCgttccctccgctagtctaccgttccacctgcctctca-gcgtgtg-actacatcaccacacgtcaggcatctctcgtgttt-acagatagcatattttttctatggcatga-tccgaatataagccagcattccttgtggtacttaattgaggaaatcacaatttgttctaatcctggaagaaaaacgagcagttggatttatgaaaagatgtgtgttggtcttcaccttaaaagattttcatggttaatttcaatatgtaattactatgtgttcctttatgtgctgacttaaaatttgacat--cctcctgagaGAGAGAGCTGCGCTATGGCACAGCTGGTGGATGCCTGGACCACGAGAGAA------AGACCCAGGGCGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1006316 586 + 1565135 CTGACTGATGCCT-GAGATGGGCTCGAGCCTGTGCTCTGCT-GGCTGGG-CCCTCCTGAGACTCTTGCGGGGGCTT-------------CCAGGCAAC-AGCAGTTGACAGCTACGCATTG-AGGGGTTGGGGAGAAACCAGAAGGATCAGTGCAGTCACCTCCTAGGAACATTTCTCTCAGGCTGAC-----TGG---------------------GCGT--------------GGGGCCACCGTCA----------GTGAGAGAGCCACT-----------CATGCTTCTCgttccctccgctagtctgccgttccacctgcctctca-gcgtgtg-aatacatcaccacacgtcaggcatctctcatgttt-acagata-catattttttctatggcatga-tccaaatataagccagcattccttgtggtacttaattgaggaaatcgcagtttgttctaatcctggaagaaaaacaagcagttggatttatgaaaagatgtgtgttggtcttcaccttaaaggattttcatggttaatttcaatatgtaattactatgtgttcctttatgtgctgacttaaaatttgacac--cctcttgagaGAGAAAGCTGCGCTGTGGCACAGCTGGTGGATGCCTGGACCACGAGAGAA------AGACCCAGGGTGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3370693 586 - 13651311 CTGACTGATGCCTGGAGATGGGCTCGAGCCCATGCTCTGCT-GGCTGGG-CCCTCCTGAGACTCTTGCGGGGGCTT-------------CCAGGCAAC-AGCAGTTGACAGCTGCGCATTG-AGGGGTTGGGGAGAAACCGGAAGGATCAGTGCAGTCCCATCCTAGGAACATTTCTGTCAGGCTGAC-----TGG---------------------GCTT--------------GGGGCCACCATCA----------GTGAGAGAGCCACT-----------CATGCTTCTCAttccctccgctagtccacagttccacctgcctctca-gcgtgtg-aatacatcaccacacttcaggcatctctcaggttt-aaagata-cgtattttttctatggcatga-tccaaatataagccagcattccttgtggtacttaattgaggaaatcgcaatttgttctaatcct-gaagaaaaagaagcagttggatttatgaaaagatgtgtgttggtcttcaccttaaaggattttcatggctaatttcaatatgtaattgctatgtgttcctttatgtgctgacttaaaatttgacac--cctcttgagaGAGAGAGCTGCACTGTGGCACAGCTGGTGGATGCCTGGAGCACGAGAGAA------AGACCCAGGGCGGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3457038 578 - 108792865 CTGACTGATGTCTGGAGATGGGCTTAAGCCTGTACTCTGCTGTGCCTGG-CCCTTCTGAGAC--T--GTGGGGCTT-------------CCAAGTGACAAGCAGTTGACAGCTAAGCATTGTGGGGGGT-GGGAGAAGCCAGAAGGATTAGTGCAGTCAAATCTTAGGAACGTTTCTCTTGGGCTGAC-----TGG---------------------G--T--------------AGGGCCACCACCA----------GTGAGAGCGTCA-T-----------CCTGCCTCTtgtgctctctgccaggctacagttccacctgcctctcattcgcgtg-agtacatcaccacacttcaggcaacgctcacattt-aaagatg-cat-ttttttttatggcatga-tccaaatataagccagcatttcttgtggtacttaaatgaggaaatcacaatttgtgctaatcctggaag-aaaacaggcagttggatttatggaaagatgtgtgttgggctttaccttgaaggattttcatggttaatttcaatatgtaatttctatgtgttcctttatgtgctgacttaaaatctgaccc-----cttaagagagagagccccactgtGGCAGAGCTGGTGGATGCCTGGGCAAGGAGGGAA------AGACCCAGAGCGTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3106886 553 - 7082604 CTGGCTGACATCTGGAGATGGGCTCAAGCCTGTACTCTGCCGTGCCGGG-CCCTTCTGAGAC-------------T-------------CCAGGTGAC-AGCAGTTGACAGCTAAGCATTG-GGGGGGT-GGGAGAAACCGGAAGGATTAGTGCAGTCACATCCTAGGGACGTTTCTCTTGGGCTGAC-----TGG---------------------G--T--------------GGGACGCCCACCA----------GTGAGAGCGTCA-T-----------CCTGCCTCCCGTGC-CTCCGCC-----------------gcctctca-tcgcatg-aaaacatcaccacacttcatgcaacgctcacgttt-aaaggtg-cacattttttctatggcatga-tccaaatataagccagcatttcttgtggtacttaattgaggaaatcgcaatttgttctaatcctggaagaaaaacaagcagttggatttatggaaagatgtgtgttgggctttaccttaaaggattttcatggttaatttcaatatgtaatgtctatgtgttcctttatgtgctgacttaaaatctgaccc--cttcttaagaGAGAGAACTCCACCGTGGCACAGCTGGTGGATGCCTGGGCAAGGAGGGAA------AGACGCAGCGCGTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 592655 562 + 5243153 CTGGCTGACATCTGGAGACAGGCTGAAGTCTGTACTCTGCTGTGCCGGG-CCCTTCGGAGACTCT--GTGGGGCTT-------------CCAAGTGAC-AGCAGTTGACAGCTAAGCATTG-TGGAGGT-GGGAGAAACCA-AAGGGTTATTGCAGTCACATCCTGGGAACGTTTCTCTTGGGCTGAC-----CGG---------------------G--T--------------GGGACCCCCACCA----------GTGAGAGCGCCA-T-----------CCTGCCTCTCCTGC-CTCCGCC-----------------gcctctca-tcgcgtg-agaacatcaccacacttcaggcaatgctcacgttt-aaaggtg-catattttttctgtggcatga-tccaaatataagccagcatttcttgtggtatttaattgaggaaattacagtttgttctaatcctggaagaaaagtaagcagttggatttatggaaagatgtgtgttgggctttaccttaaaggattttcatggttaatttcaatatgtaatgtctatgtgttcctttatgtgctgacttaaaatctgaccc--cTTCTTCAGAGAGAGAACCCCACTGTGGCACAGCTGGCGGATGCCTGGGC-AGGAGGGAA------AGACCCAGCACGTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1927342 582 - 1938448 CTGGCTGACCTCTGGAGATGGGCTCAAGCCTGTACTCTGCTGTGCCAGG-CCCTTCTGAGACTCT--GTGGGGCTT-------------CCAAGTGAC-AGCAGTTGACAGCTAAGCATTG-GGGGGGT-GGGAGAAACCAGAAGGATTGGTGCAGTCACATCCTAGGAACGTTTCTCTTGGGCTGAC-----TGG---------------------G--T--------------GGGGCCACCACCA----------GTGAGAGCGCCG-T-----------CCTGCCTCTCgtgccctccgccagactgcagttccacctgcctctca-tcgcgtg-agcacatcaccacacttcaggcaacgctcacgttt-aaagatg-cctatgtattctatggcatga-tccaaatataagccagcatttcttgtggtactcaattgaggaaatcacaatttgttctaatcctggaagaaaaacaagcagttggatttatggaaagatgtatgttgggctttaccttaaaggattttcatggttaatttcaatatgtaagttctatgtgttcctttatgtgctgacttaaaatctgacct--cttcttaagaGAGAGAACCCCACTGTGGCACAGCTGGTGGATGCCTGGGCAAGGAGGGAA------AGACCCAGAGCGTG i aotNan1.NW_018507213v1 C 0 C 0 s canFam3.chr17 2044106 590 + 64289059 CAGACCTATCCCCAGAGAGGGGATCATGCCTGTGCTCTGTTGGACTGGGCCCCTCCTCAGACTC---AGGTGGTTTCATCCCAAAGTGGCCAAGTGAT-GACAGCTGACAGC--------A-TGGGCATGAGAGGTAA--AGCAGGTGTAGTGCAATCATACTACGGGAACATTTCTTGTAGGCTGACACGCTTGGAGGAGACAAGGCAGAAATAGTGCAG--------------GGACCCGCTGCCA----------GTGTGCATGTGACT-----------TGagtctctcg------------------ggtgccacctgcttctca-ccgtggg-agcatcccgccacgcatcacggaattgcactgtgt-accagta-gatgtttctcttatggcgtga-cccagatgtaagcctatccttctcctggtgcctaattgatgaaatggcaggtggtccttattctggaagaaagacaagcagttgg--ttgtggaagatagtgtgttggtctcTGGCCAAAAGGATGTTCATGGCTAATTTCAACATGTAATTTCTATGTGTTCC-TTATGTGCCAGCTTAAAATTTGGCCCCACCTCCAAAGAGAGGCAACCTCA-TGTCACATGACTGGCTGGCGCT-----AAAGAGAGAA------AGGGAGAGGGCATG i canFam3.chr17 C 0 I 1026 s dasNov3.JH580157 569710 564 + 2232271 CTTACTG-TGTTTAGTGATGGATTGAAATCTG--CTCATCAGGGTGGTT-TTATCCTGAAATGC-------------------------CCGAGTAAT-GACTGTTGACAGGTAAGCATGG-ACTGAATAGAGATGAAGCAAAAGGTTTAGTGTAATCACATCATAGTA--------CTTATGCTGAC-----TCG---------------------GCTTTGAAAGAGGAAGGGGGGGTGATAGGAATTTACATAGTGTAAGGGACCTGCTATCCTTGAGTACGTGTGACT-GTttccctcgttggtctcagattacacatgcctctca-taatgtgaaatatatcaccacatttcatataactctgatgtctaaaagaga-gatatttttcttatgccatgaccccagatgtaagccgatactttgtg-ggttagaaattgaagaaacagaaatgtattccaatcctggagggaaaacaaccatctcttactaagagatggtgtgtat------------------gtcttcaTAGTTAATT---------------GATTTGTCATCTTATATGCTGACTTAAAACTAAAATA--ACT---------GGTAACAACA-TGTAAAATAATTAGTTGATACTTGAAAAAAGAAAGAGAAAGACAGACCTAGAGCACG i dasNov3.JH580157 I 34 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e proCoq1.NW_012151163v1 960631 663 + 1238772 I e otoGar3.GL873658 2539035 0 + 5252280 C a score=3591609.000000 s hg38.chr2_KI270769v1_alt 55959 472 + 120616 ----ACCATATAGTCAGCCTTGCCTGTCCGCCACCTTT----GGCAGGAGAAGAAGCACCGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAACTTCCTCGCTCACTTCCTTGCACGTTAGGGGCT-CATGGCCGCATGT-GGGCATTCTTGACCTTTCTGCGGCTGGTTCAGTGTTGAACTGAAGCAGTTTTTATCTGGATGTGAACAGTGGGCAC-------TGCGGGGACATGGAGCAATGCGTCT----CCACGCTG-------TCCAGAACAGCTCTATCTGAGCTTGTTCatttgttcatgcagcaaatgccctttcagcacctactgagtact--------gcacactggcagttcgggactcaacagaacgca-gcctcgccctcagtgagtttacagtttggtagacgaTGCTTGTTTCAC-----------CTGTTCCTTTTAGGTTTGCAGCCATCACCAATACATCATGATCCTCCAGAATTTAAAAAGGGACAGTTTGTGTTCATGCTAGAATTTCTTTACTCAAGAAGTGt s panTro5.chr2A 3516553 472 + 111504155 ----ACCATACAGTCAGCCTTGCCTGTCCGCCACCTTT----GGCAGGAGAAGAAGCACCGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAACTTCCTCGCTCACTTCCTTGCACGTTAGGGGCT-CGTGGCCGCATGT-GGGCATTCTTGACCTTTCTGTGGCTGGTTCAGTGTTGAACTGAAGCAGTTTTTATCTGGATGTGAACAGTGGGCAC-------TGCGGGGACATGGAGCGATGCGTCT----CCACGCTG-------TCCAGAACAGCTCTATCTGAGCTTGTTCatttgttcatgcagcaaatgtcctttcagcacctactgagtact--------gcacactggcagttcgggactcaacagaacgca-gcctcgccctcagtgagtttacagtttggtagacgaTGCTTGTTTCAC-----------CTGTTCCTTTTAGGTTTGCAGCCATCACCAATACATCATGATCCTCCAGAATTTAAAAAGGGACAGTTTGTGTTCATGCTAGAATTTCTTTACTCAAGAAGTGt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3377489 472 + 114371477 ----ACCATACAGTCAGCCTTGCCTGTCCGCCACCTTT----GGCAGGAGAAGAAGCACCGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAACTTCCTCGCTCACTTCCTTGCATGTTAGGGGCT-CGTGGCCGCATGT-GGGCATTCTTGACCTTTCTGTGGCTGGTTCAGTGTTGAACTGAAGCAGTTTTTATCTGGATGTGAACAGTGGGCAC-------TGCGGGGACATGGAGCGATGCGTCT----CCACGCTG-------TCCAGAACAGCTCTATCTGAGCTTGTTCatttgttcatgcagcaaatgtcctttcagcacctactgagtact--------gcacactggcagttcgggactcaacagaacgca-gcctcgccctcagtgagtttacagttgggtagacgaTGCTTGTTTCAC-----------CTGTTCCTTTTAGGTTTGCAGCCATCACCAATACATCATGATCCTCCAGAATTTAAAAAGGGACAGTTTGTGTTCATGCTAGAATTTCTTTACTCAAGAAGTGt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 254997 479 + 637652 ----ACCATACAGTCAGCCTTGCCTGTCCGCCACCTTC----GGCAGGAGAAGAAGCA-CGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAACTTCCTCGCTCACTTCCTCGCACGTTAGGGGCT-CGTGGCCGCATGT-GGGCATTCTTGACCTTTCTGCAGCTGGTTCAGTGTTGAACTGAAGCAGTTTTTATCTGGATGTGAACAGTGGGCAC-------TGCGGGGGCATGGAGCGATGTGTCT----CCACGCTG-------TCCAGAACAGCTCTATCTGAGCTTGTTCatttgttcatgcagcaagtgtcctttcagcacctactgagtactgcacactggcacactggcagttcgggactcaacagaacgca-gcctcgccctcagtgagtttacagtttggtagacgaTGCTTGTTTCAC-----------CTGTTCCTTTTAGGTTTGCAGCCATCACCAATACATCATGATCCTCCAGAATTTAAAAAGGGACAGTTTGTGTTCATGCTAGAATTTCTTTACTCAAGAAGTGt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3051203 472 + 81552678 ----ACCACGCAGTCAGCCTTGCCTGTCCGCCACCTTC----CGCAGGAGAAGAAGCACCGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAACTTCCTCGCTCACTTCCTTGCACATTAGGGGCT-CGTGGCAGCATGT-GGGCATTCTTGACCTTTCTGCGGCTGGTTCAGTGTTGAACTGAGGCAGTTTTTATCTGGATGTGAATACTGGGCAT-------TGTTGGGGCATGGAGCGATTTGTCT----CCATGCTG-------TCCAGAACAGCTCTATCTGAGCCTGTTCatttgttcatgcagcaaatgtcctttcagcacctactgagtact--------gcacgctggcagttcgggactcaacagaacgca-gcctttccctcagtgagtttacagtttggtagacgaTGCTTGTTTCAC-----------CTGTTCCTTTTAGGTTTGCAGCCATCACCAATACATTATGATCCTCCAAAATTTAAAAAGGGACAGTTTGTGTTCATGCTAGAATTTCTTTACTCAATAAGTGt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3314451 476 + 108979918 ----ACCATGCAGTCAGCCTTGCCTCTCCGCCACCTTT----GGCAGGAGAAGAAGCACCGTCGCCAACTTCCTCGGTCACTTCCTTGCACA----------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGGGCTCGTGGGAGCATGTGGGGCCTCTCCACTACCTTCCGCAGGAGAAGCACCGTTGCCAACTTCCTTGCTCACTTCCTTGCACATTAGGGGCT-TGTGGCAGCATGT-GGGCATTCTTAACCTTTCTGTGACTGGTTCAGTGTTGAACTGA-------------------------------------------------------------------------------------------------------AGCTTGTTCatttgttcatgcagcaaatgtccattcagcacctactgagtgct--------gcacgctggcagttggggactgaacagaacaca-gccttgccctcagtgagtttacagtttggtagacgaTGCTTGTTTCAC-----------CTGTTCCTTTTAGGTTTGCAGCCATCACCAATACATCATGATCATCCAGAATTTAAACAGGGACAGTTTGTCTTCATGCTCGAATTTCTTTACTCAAGAAGTGt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5025586 476 - 111193037 ----ACCATGCAGTCAGCCTTGCCTCTCCGCCACCTTT----GGCAGGAGAAGAAGCACCGTCGCCAACTTCCTCGGTCACTTCCTTGCACA----------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGGGCTCGTGGGAGCATGTGGGGCCTCTCCACTACCTTCCGCAGGAGAAGCACCGTTGCCAACTTCCTTGCTCACTTCCTTGCACATTAGGGGCT-TGTGGCAGCATGT-GGGCATTCTTAACCTTTCTGTGACTGGTTCAGTGTTGAACTGA-------------------------------------------------------------------------------------------------------AGCTTGTTCatttgttcatgcagcaaatgtccattcagcacctactgagtgct--------gcacgctggcagttggggactgaacagaacaca-gccttgccctcagtgagtttacagtttggtagacgaTGCTTGTTTCAC-----------CTGTTCCTTTTAGGTTTGCAGCCATCACCAATACATCATGATCATCCAGAATTTAAACAGGGACAGTTTGTGTTCATGCTCGAATTTCTTTACTCAAGAAGTGt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3418543 476 + 3644372 ----ACCCTGCAGTCAGCCTTGCCTCTCCGCCACCTTT----GGCAGGAGAAGAAGCACCGTCGCCAACTTCCTCGGTCACTTCCTTGCACAT------------------------------------------------------------------------------------------------------------------TAAGGGCTCGTGGGAGCATGTGGGGCCTCTCCACTACCTTC----------------------------------------CGCAGGAGAAGCACCGTTGCCAACTTCCTCGCTCACTTCCTTGCACATTAGGGGCT-TGTGGCAGCATGT-GGGCATTCTTAACCTTTCTGTGACTGGTTCAGTGTTGAACTGA-------------------------------------------------------------------------------------------------------AGCTTGTTCatttgttcatgcagcaaatgtccattcagcacctactgagtgct--------gcacgctggcagttggggactgaacagaacaca-gccttgccctcagtgagtttacagtttggtagacgaTGCTTGTTTCAC-----------CTGTTCCTTTTAGGTTTGCAGCCATCACCAATACATCATGATCATCCAGAATTTAAACAGGGACAGTTTGTGTTCATGCTCGAATTTCTTTACTCAAGAAGTGt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3374010 476 - 10304083 ----ACCATGCAGTCAGCCTTGCCTCTCCGCCACCTTT----GGCAGGAGAAGAAGCACCGTCGCCAACTTCCTCGCTCACTTCCTTGCACAT---------------------------------------------------------TAAGGGCTCGTGGGAGCATGTGGGGCCTCTCCACTACCTTCCACAGGAGAAGCACCGT-------------------------------------------------------------------------------------------------TGCCAACTTCCTCGCTCACTTCCTTGCACATTAGGGGCT-TGTGGCAGCATGT-GGGCATTCTTAACCTTTCCGTGACTGGTTCAGTGTTGAACTGA-------------------------------------------------------------------------------------------------------AGCTTGTTCatttgttcatgcagcaaatgtccattcagcacctactgagtgct--------gcacgctggcagttggggactgaacagaacaca-gccttgccctcagtgagtttacagtttggtagacgaTGCTTGTTTCAC-----------CTGTTCCTTTTAGGTTTGCAGCCATCACCAATACATCATGATCATCCAGAATTTAAACAGGGACAGTTTGTGTTCATGCTCGAATTTCTTTACTCAAGAAGTGt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3462901 476 - 107702431 ----ACCATGCAGTCAGCCTTGCCTCTCCGCCACCTTT----GGCAGGAAAAGAAGCACCGTCGCCAACTTCCTCACTCACTTCCTTGCACATTAAGGGCTCGTGGGAGCATGTGGGGCCTCTCCACTACCTTCCGCAGCAGAAGCACCGT----------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAACTTCCTCGCTCACTTCCTTGCACATTAGGGGCT-TGCGGCAGCATGT-GGGCATTCTTAACCTTTCTGTGACTGGTTCAGTGTTGAGCTGA-------------------------------------------------------------------------------------------------------AGCTTGTTCatttgttcacgcagcaaatgtccattcagcacctactgagtact--------gcacactggcagctggggactgaacagaacaca-gccttgccctcagtgagtttacagtttggtagacgaTGCTTGTTTCAC-----------CTGTTCCTTTTAGGTTTGCAGCCATCACCAATACATCATGATCATCCAGAATTTAAACAGGGACAGTTTGTGTTCATGCTAGAATTTCTTTACTCAAGAAGTGt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1006902 387 + 1565135 ----ACCATGCAGTCAGCCTTGCCTCTCCGCCACCTTT----GGCAGGAGAAGAAGCACCGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAACTTCCTCGCTCTCTTCCTTGCACATTAGGGGCT-CATGGCAGCATGT-GGGCATTCTTAACCCTTCTGTGACTGGTTCAGTGTTGAACTGA-------------------------------------------------------------------------------------------------------AGCTTGTTCatttgttcatgcagcaaatgtccattcagcacctactgagtgct--------gcacgctggcagttggggactgaacagaacaca-gccttgccctcagtgagtttacagtttggtagacgaTGCTTGTTTCAC-----------CTGTTCCTTTTAGGTTTGCAGCCATCACCAATACATCATGATCATCCAGAATTTAAACAGGGACAGTTTGTGTTCATGCTCCAATTTCTTTACTCAAGAAGTGt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3371279 387 - 13651311 ----ACCATGCAGTCAGCCTTGCCTCTCCGCCACCTTT----GGCAGGAGAAGCAGCACCGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAACGTCCTCACTGACTTCCTTGCACGTTAGGGGCT-CATGGCAGCATGT-GGGCATTCTTAACCTTTCTGTGACTGGTTCAGTGTTGAACTGA-------------------------------------------------------------------------------------------------------AGCTTGTTCatttgttcatgtggcaaatgtccattcagcacctactgagtact--------gcacgctggcagttggggactgaacagaacaca-gccttgccctcagtgagtttacagtttggtagaCAATGCTTATTTCAC-----------CTGTTCCTTTTAGTTTTGCAGCCATCACCAATACATCATGATCATCCAGAATTTAAACAGGGACAGTTTGTGTTCATGCTAGAATTTCTTTACTCAAGAAGTGt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3457616 477 - 108792865 ----ACCATGCAGTCAGCCTTGTGTCTCCGCCACCTTC----TGCAGCATAAGCAGCGCAGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGCTTCCTCGCTCACTTCCTTGCACATTAGGGGCT-CGAGGCAGCACGCGGGGCATTCCTGGCCTTTCTGTGGCTGGTTCCATGTTTAACTGAAGCGGTTTTCATCTGGATGTGAACACTGGGCACGTAAGCACTTTGGGACATGGAGTGAGTTGTCT----CCCCACTG-------TCCAGAACAGCTCTATCTGAGCTTGTTCGtttgttcatgcagcaaatggcca-tcagcatctactgagtgcc--------acatgctggccgttcagggctgactgcaacaca-gcctcgccggcagcgggttcgcagtttgggagacgaCGCTTGTTTCAC-----------CCGCTCCTTTCAGGTTTGCAGCCATCACCAATAC-TCATGATCATCCAGAATTTAAAAAGGGAAAGTCTGTGTT-ACGCTAGAATTTCTTTACTCAAGAAGTGt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3107439 478 - 7082604 ----ACCATGCAGTCAGCCTTGTGTCTCTGCCACCTTC----TGCAGCATAAGCAGCGCAGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAGCTTCCTCTCTCACTTCCTTGCACATCAGGGGCT-TGAGGCAGCACGCGGGGCATTCCTGACCTTTCTGTGGCTAGTTCGGTGTTTGACTGAAGCGGTTTTCATGTGGATGTGAACACTGGGCACGTAGGCACTTTAGGACATGGAGTGACTTGTCT----CCCCGCTG-------TCCGGAACAGCTCTGTCTGAGCTTGTTCatttgttcatgcagcaagtggcca-tcagcatctactgagtgtc--------acatgctggcagttcagggccgaccgcaacaca-gctgcgccctcagtgggttcgcagtctggtagacgaTGCTTGTTTCAC-----------CCGCTCCCTTTAGGTTTGCAGCCATCACCAATACATCATGATCATCCAGAATTTAAAAAGGGAAAGTCTGTGTT-ACGGTAGAATTTCTTTACTTAAGAAGTGt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 593217 473 + 5243153 ----ACCATGCGGTCAGCCTTGTGTCGCCACCACCTTC----TGCAGCATGATCAGCGTGGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGCTTCCTCTGTCACTTCCTTGCACATTAGGGGCC-TGAGGCAGCACGCGGGGCATTGCTGACCTTTCTGTGGCTGGTTCAGTGTTGAACTGAAGCGGTTTTCATCTGGATGTGACCACTGGACACATAGGCACTTTGGGACATGGAGTGATTTGTCT----CCCCACTG-------TCCAGAACAGCTCTGTCTGAACTTGTTCatttgttcatgcagcaagtggcca-tcagcatctactgagtgcc--------acatgctggcagttcagggctgatcacaacaca-gcctcgccctcagtgggttcgcagtttggtaggcgaTGCTTGTTTCAC-----------CCGCTCCCTTTAGGTTTG-----ATCACCAATACATCATGATCATCCAGAATTTAAAAAGGGAAAGTCTGTGTT-ACGGTAGAATTTCTTTACTCGAGAAGTGt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1927924 475 - 1938448 ----ACCATGCAGTCAGCCTTGTGTCTCCGCCACCTTC----TGCAGCATGAGAAGGGCAGCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGCTTCCTCTCTCACTTGCTTACACATTAGGGGCT-CGAGGCAGCACGCGGGGCATTCCTCACCTTTCTGTGACTGGTTCAGTGTTTAACTGAAGCGGTTTTCATCTGGATGTG--CACTGGGCACGTAAGCACTCTGGGACATGGAGTGATTTGTCT----CCCTGCTG-------TCCAGAACAGCTCTATCTGAGCTTGTTCatttgttcatgcagcaagtggcca-tcagcatctactgagtgcc--------acatgctggcagttcagggctcaccacaacaca-gcctcgccctcagtgtgttcgcagtttggtagacgaTGCTTGTTTCAC-----------CC-CTCCTTTTAGGTTTGCAGCCGTCACCAATACATCATGATCATCCAGAGTTTAAAAAGGGAAAGTCTGTGTT-ATGGTAGAATTTCTTTACTCAAGAAGTGt i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 570274 500 + 2232271 GAAATACATACAATCAACCTTAAATTTCTTCTGCCATTACCCTGCAAAATAAGAAAAACAATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAGCTTCCTTTTTCACTTCCTC-TACATTATGGGCCACGTATCACCCTTA-AGGCATGCTTTACCCTTCCAAGGTTGATTTAATGTTTAGTTTAAGCTGTTTTCAACTGGGTTCCTATATTGGGCAC--------TTAGGAACATGG-GTAATTTGTCTCTGGCCCCACTACTCTCATCTCAGTATAGCTGTGTCTGAATTTGttcatttgttattgcaacaaatatttattcagcacctactgtgtgct--------acatgctaacaattaatgg-tgaagaaaatacaccccccgtccttaatgagtttaccatccaACATACAATCCGTGTTTCACAGACAACCCAGTCAGTCCTTTTTCATTTGTAGCCATTCACAATATATCATAGTTGTCCAGAATTTAAAAAATAGAAAATTGTGTTCAAACTAGGATTTA-TTACTCCAGAAGTAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 960631 663 + 1238772 I e otoGar3.GL873658 2539035 0 + 5252280 C a score=1519238.000000 s hg38.chr2_KI270769v1_alt 56431 169 + 120616 gtattagtccatctggctttgccataaaggaatacccgagggtgagtcatttataaagaaaaggtttattttggctcacagtcctgcaggctgtacaagaagcacagtg--------tcagcatctgcttccagtga-ggcctcaggaagc----ttttt----------------------------------------------tttttttcttgaagcggagtct s panTro5.chr2A 3517025 168 + 111504155 gtattagtccatttggctttgccataaaggaatacccgagggtgagtcatttataaagaaaaggtttattttggctcacagtcctgcaggttgtacaagaagcacagtg--------tcagcatctgcttccggtga-ggcctcaggaagc-----tttt----------------------------------------------tttttttcttgaagcggagtct i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3377961 167 + 114371477 gtattagtccatttggctttgccataaaggaatacccgagggtgagtcatttataaagaaaaggtttattttggctcacagtcctgcaggttgtacaagaagcacagtg--------tcagcatctgcttccggtga-ggcctcaggaagc------ttt----------------------------------------------tttttttcttgaagcggagtct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 255476 169 + 637652 gtattagtccatttggctttgccataaaggaatacccgagggtgagtcatttataaagaaaaggtttattttggcttacagtcctgcaggctgtacaagaagcacagtg--------tcagcatctgcttccgctga-ggcctcaggaagc----ttttt----------------------------------------------tttttttcttgaagcgaagtct i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3051675 173 + 81552678 gtattagtccatttggcattgccataaaggaatacccgagggtgagtcatttataaagaaaaggtttattttggctcacagtcctgcaagctgtacaagaagcacagtg--------tcagcatctgcttccggtga-ggcctcaggaagcttttttttt----------------------------------------------ttttttttttGAAACGGAGTCT i nomLeu3.chr19 C 0 I 1022 s rheMac8.chr13 3314927 171 + 108979918 gtcttagtccatttggcattgccataaaggaatacctgagggtgagtcatttataaagaaaaggtttattttggctcacacttctgcaggccgtacaagaagcacagtgtcagcatctcagcatctgcttctggtga-ggcctcaggaagc--------------------------------------------------------tttttttttgaaacagagtct i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5026062 172 - 111193037 gtcttagtccatttggcattgccataaaggaatacccgagggtgagtcatttataaagaaaaggtttattttggctcacacttctgcaggccgtacaagaagcacagtgtcagcatctcagcatctgcttctggtga-ggcctcaggaagc-------------------------------------------------------ttttttttttgaaacagagtct i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3419019 172 + 3644372 gtcttagtccatttggcattgccataaaggaatacccgagggtgagtcatttataaagaaaaggtttattttggctcacacttctgcaggccgtacaagaagcacagtgtcagcatctcagcatctgcttctggtga-ggcctcaggaagc-------------------------------------------------------ttttttttttgaaacagagtct i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3374486 164 - 10304083 gtcttagtccatttggcattgccgtaaaggaatacccgagggtgagtcatttataaagaaaaggtttattttggctcacacttctgcaggctgtacaagaagcacagtg--------tcagcatctgcttctggtga-ggcctcaggaagc-------------------------------------------------------ttttttttttgaaacggagtct i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3463377 165 - 107702431 gtcttagtccatttggcattgccgtaaaggaatacccgagggtgagtcatttataaagaaaaggtttcttttggctcacacttctgcaggctgtacaagaagcacagtg--------tcagcatctgcttctggtga-ggcctcaggaagc--------t----------------------------------------------ttttttttttgaaacggagtct i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1007289 164 + 1565135 gtcttagtccatttggcattgccgtaaaggaatacctgagggtgagtcatttataaagaaaaggtttattttggctcacacttctgcaggccgtacaagaagcacagtg--------tcagcatctgcttctggtga-ggcctcaggaagc-------------------------------------------------------ttttttttttgaaacggagtct i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3371666 179 - 13651311 gtattcgtccatttggcattgccataaaggagtacccgagggtgagtcatttataaagaaaaggtttattttggctcacagttctgcaggctgtacaagaagcacagtgtcagcatctcagcatctgcttctggtga-ggcctcaggaagc--ttttttt----------------------------------------------ttttttttttgaaacggagtct i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3458093 167 - 108792865 gtcttggtccgtttggtggtgccataaaggaataccccagagtgagtcatttataaagaaa--ggttatcttggctcacagttctgcaggctatataagaagcacggtg--------tcagcatctgctgctgctgt-ggcctcaggaagc----ttctc----------------------------------------------tttttttttcgaaacagagtct i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3107917 213 - 7082604 gtctcggtccgtttggtagtgccataaaggaatacccgagagtgagttatttacaaagaaaagggttatcttggctcacagttctgcaggctgtaccaggagcacggtg--------tcagcatctgcttccggtgt-ggcctcaggaagc----tcttctttttttttttcttttcttttttttttttttttttttttttttttttttttttttttaaac--agtct i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 593690 177 + 5243153 atcttggtccatttggtagtgccataaaggaatacccgagaatgagtcatttataaagaaaaggtttatcttggctcacagttctgcaggcaatacaagaagcacagtg--------tcagcatctgcttctggtgtgggcctcaggaagc----ttttt---------------------------------------tttttttttttttttttgaaacagagtct i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1928399 170 - 1938448 gtcttggtccatttggtagtaccataaaggaatacccgagactgagtcatttataaagaaaaggtttatcttggctcacagttctgcacactatacaagaagcacggtg--------tcagcatctgcttctggtgt-ggcctcaggaagc----ttttc---------------------------------------------tttttttttttgaaacagagtct i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 960631 663 + 1238772 I e dasNov3.JH580157 570774 0 + 2232271 C e otoGar3.GL873658 2539035 0 + 5252280 C a score=2407643.000000 s hg38.chr2_KI270769v1_alt 56600 287 + 120616 cgttctgtcacccaggctggagtgcagtggcgctattggctcactgcaacctccacctcccaggttcaagcgattctcctgccttgcctcctgagtagctaggattacaggcgcccatcaccacacctggctaatttttcta-tttttagtagagacagggcttcaccatggtggccaggctagcctcaaactcctgacctcaaatgatccacccgccttggcctcccaaagtactgggattacaggcatgagccactgcgcctggccaggaagcttttaatcatagt s panTro5.chr2A 3517193 288 + 111504155 cgttctgtcacccaggctggagtgcagtggcgctattggctcactgcaacctccacctcccaggttcaagcgattctcctgccttgcctcctgagtagctaggattacaggcgcccatcaccacacctggctaatttttctattttttagtagagacagggcttcaccatggtggccaggctagcctcgaactcctgacctcaaatgatccacccgccttggcctcccaaagtactgggattacaggcatgagccactgcgcctggccaggaagcttttaatcatagt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3378128 288 + 114371477 cgttctgtcacccaggctggagtgcagtggcgctattggctcactgcaacctccacctcccaggttcaagcgattctcctgccttgcctcctgagtagctaggattacaggcgcccatcaccacacctggctaatttttctattttttagtagagacagggcttcaccatggtggccaggctagcctcgaactcctgacctcaaatgatccacccgccttggcctcccaaagtactgggattacaggcatgagccactgcgcctggccaggaagcttttaatcatagt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 255645 287 + 637652 cgttctgtcacccaggctggagtgcagtggcgctattggctcactgcaacctccacctcccaggttcaagcaattctcctgccttgcctcctgagtagctaggattacaggcgcccaccaccacacctggctaatttttcta-tttttagtagagacagggcttcaccatggtggccaggctagcctcaaactcctgacctcaaatgatccacccgccttggcctcccaaagtactgggattacaggcatgagccactgcgcctggccaggaaacttttaatcatagt i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3315098 284 + 108979918 ggttctgtcacccaggctggaatgcagtgacgctattgggtcactgcaacctccacctcccaggttcaagcagttctcctgcctcacctcctgagtagctaggattacaggcatccaccaccacacctggctaatttttgta-tttttagtagagacagaacttaaccacgttggccaggctggcctcaaactcctgacctcaaatgatccacctgccttggcctcccaaagtgctgggattacaggcatgagccactgcgcccggccaggaagcttttaatcc---t i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5026234 287 - 111193037 ggttctgtcacccaggctggagtgcagtgacgctattgggtcactgcaacctccacctcccaggttcaagcagttctcctacctcacctcctgagtagctaggattacaggcatccaccaccacacctggctaatttttgta-tttttagtagagacagggcttaaccacgttggccaggctggcctcaaactcctgacctcaaatgatccacctgcctcggcctcccaaagtgctgggattacaggcatgagccactgcgcccggccaggaagcttttaatcctagt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3419191 287 + 3644372 ggttctgtcacccaggctggagtgcagtgacgctattgggtcactgcaacctccacctcccaggttcaagcagttctcctgcctcacctcctgagtagctaggattacaggcatccaccaccacacctggctaatttttgta-tttttagtagagacagggcttaaccacgttggccaggctggcctcaaactcctgacctcaaatgatccacctgcctcggcctcccaaagtgctgggattacaggcatgagccactgcgcccggccaggaagcttttaatcctagt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3374650 287 - 10304083 ggttctgtcacccaggctggagtgcagtgatgctattgggtcactgcaacctccacctcccaggttcaagcagttctcttgcctcacctcctgagtagctaggattacaggcatccaccaccacacctggctaatttttgta-tttttagtagagacagagcttaaccacgttggccaggctggcctcaaactcctgacctcaaatgatccacctgcctcggcctcccaaagtgctgggattacaggcatgagccactgcgcccggccaggaagcttttaatcctagt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3463542 287 - 107702431 cgttctgtcaccgaggctggagtgcagtgacgctattgggtcactgcaacctccacctcccaggttcaagcagttctcctgcctcacctcctgagtagctaggattacaggcacccaccaccacacctggctaatttttgta-tttttagtagagacagggcttaaccatgttggccaggctggcctcaaactcctgacctcaaatggtccacctgcctcggcctcccaaagtgctgggattacaggcatgagccactgcgcccggccaggaagcttttaatcctagt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1007453 287 + 1565135 cgttctgtcacccaggctggagtgcagtgacgctattgggtcactgcaacctccacctcccaggttcaagcagttctcctgcctcacctcctgagtagctaggattacaggcacccaccaccacacctggctaatttttgta-tttttagtagagacagggcttaaccatgttggccaggctggcctcaaactcctgacctcaaatgatccacctgcctcggcctcccaaagtgctgggattacaggcatgagccactgcacctggccaggaagcttttaatcctagt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3371845 287 - 13651311 cattctgtcacccaggctggagtgcagtgatgctattggctcactgcaacctccacctcccaggttcaagcagttctcctgcctcgcctccggagtagctaggattacaggcacccaccaccacacctggctaatttttgta-tttttagtagagacagggcttaaccatgttggccaggctggcctcgaattcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggatgacaggcatgagccactgctccaggccaggaagcttttaatcctagt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3458260 257 - 108792865 cattctgtcacccagggtggagtgcagtctagcagtcggttcactgcaacctccacatcccaggttcaagtgattctcctacctcac--------------------------cccaccaccacttccggctaatttttg-----tttagtagagacagggtttcaccatgttggccaggctagtctcgaactcctgacctcaaatcatctaactcccttggtttcccaaagtgctggaattacaggcatgagccactgcacctggccaggaagcttttagtcatagt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3108130 287 - 7082604 cgttctgtcacccaggctggagtgcagtctagcagtcggctcactgcaacctccacctcccaggtttgagtgattctcctgcctcacctcctgagtagctgggattacaggtgcccaccatcacttctggctaattgttgta-tttttagtagagacagagtttcaccatgttggccaggctagtctcgaactcctgacctcaaatgatctacctcccttggcttcccaaagtgctaggattacaggcatgaaccactgcacctggccaggaagcttttaatcatagt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 593867 286 + 5243153 cgttctgtcacccaggctggagtgcagtccagcagtcagctcactgcaacctccacctcccaggttcgagtgattctcctgcctcacctgctgagtagctgggattacaggtgcccaccaccacttccagctaatttttgta-tttttagtagagacagggtttca-catgttggccaggctagtctcgaactcctgacctcaaatgatctacctcccttggcttcccaaagtgctgggattacaggcatgaaccactgcacatggccaggaagcttttaatcatagt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1928569 286 - 1938448 tgttctgtcacccaggctggagtgcagtctagcagtcggctcactgcaatctccacctcccaggttcgagtgattctcctgcctcacctcctgaatagctgggattacaggtgcccatcaccacttccagctaatttttgta-tttttagtagagacagggtttcaccatgttggccaggctagtcttgaactcctgacctcaaatgatctacctcgcttggcttctcaaagtgct-ggattacaggcatgaaccactgcacctggccaggaagcttttaatcatagt i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 960631 663 + 1238772 I e dasNov3.JH580157 570774 0 + 2232271 C e otoGar3.GL873658 2539035 0 + 5252280 C e nomLeu3.chr19 3051848 1022 + 81552678 I a score=2338027.000000 s hg38.chr2_KI270769v1_alt 56887 276 + 120616 agaaagcaaaggggaagcaagtgtgtcacatggtgagaaagacagcga-gaga--------------------gaa---gaggaggag---gagggaggcaccaga-ctttttttgacaatcagatcccaaggtaactaacagagccagaactcattcattgccatagggacggtaccaagccacccatgagggatccacccccaggacacaaacaccccccaccaggacccacctccaacactggagctcacatttcaacatgagatttggaggggatgaatgtccaaactatatcaTAGTGC- s panTro5.chr2A 3517481 273 + 111504155 agaaagcaaaggggaagcaagtgtgtcacatggtgagaaagacagcga-gaga--------------------gaa------gaggag---gagggaggcaccaga-ctttttttgagaatcagatcccaaggtaactaacagagccagaactcattcattgccgtagggatggtaccaagccacccatgagggatccacccccaggacacaaacaccccccaccaggccccacctccaacactggagctcacatttcaacatgagatttggagggggtgaatgtccaaactatatcaTAGTGC- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3378416 273 + 114371477 agaaagcaaaggggaagcaagtgtgtcacatggtgagaaagacagcga-gaga--------------------gaa------gaggag---gagggaggcaccaga-ctttttttgagaatcagatcccaaggtaactaacagagccagaactcattcattgccgtagggatggtaccaagccacccatgagggatccacccccaggacacaaacaccccccaccaggccccacctccaacactggagctcacatttcaacatgagatttggagggggtgaatgtccaaactatatcaTAGTGC- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 255932 274 + 637652 agaaagcaaa-gggaagcaagtgtgtcacatggtgagaaagacagcga-gaga--------------------gaa---gaggaggag---gagggaggcaccaga-ctttttttgacaatcagatcccaaggtaactaacagagccagaactcattcattgccgtagggacggtaccaagcca-ccatgagggatccacccccaggacacaaacaccccccaccaggccccacctccaacactggagctcacatttcaacatgagatttggaggggatgaatgtccaaactatatcaTAGTGC- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3052870 268 + 81552678 aaaaagcaaaggggaagcaagtgtgtcacatggtgagaaggagagcga-ga-------------------------------gaggag---gagggaggcaccaga-ctttttttggcaatcagatcccaaggtaactaacagagccagaactcattcattgctgtagggacagtaccaagccacccatgagggatccacccccaggacacaaacacctcccaccaggccccaccttcaacactggagctcacatttcaacatgagatttggaggggatgaatgtccaaactgtatcaTAGTGC- i nomLeu3.chr19 I 1022 C 0 s rheMac8.chr13 3315382 282 + 108979918 agaaagcaaaggggaagcaagtatgtcacacagtgagaacgagagtgacaagc--------------------gaa---gaggaggaggacgagtgaggcaccagagtttttttaaacaatcagatcccaagataacgaatggagccagaactcattcgttgccacagggagggtaccaagccacccatgagggttccacccccaggaaacagacacctcccaccaggccccacctccaacactggggctcacatttcatcatgagagttggaggggatgaatgtccaaactctaccaTAGTGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5026521 282 - 111193037 agaaagcaaaggggaagcaagtatgtcacacagtgagaacgagagtgacaagt--------------------gaa---gaggaggaggacgagggaggcaccagagtttttttaaacaatcagatcccaagataacgaatggggccagaactcattcgttgccacagggagggtaccaagccacccatgagggttccacccccaggaaacagacacctcccaccaggccccacctccaacactggggctcacatttcatcatgagagttggaggggatgaatgtccaaacTCTGCCATAGTGCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3419478 282 + 3644372 agaaagcaaaggggaagcaagtatgtcacacagtgagaacgagagtgacaagt--------------------gaa---gaggaggaggacgagggaggcaccagagtttttttaaacaatcagatcccaagataacgaatggagccagaactcattcgttgccacagggagggtaccaacccacccatgagggttccacccccaggaaacagacacctcccaccaggccccacctccaacactggggctcacatttcatcatgagagttggaggggatgaatgtccaaacTCTGCCATAGTGCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3374937 282 - 10304083 agaaagcaaaggggaagcaagtatgtcacacagtgagaacgagagtgacaagt--------------------gaa---gaggaggaggacgagggaggcaccagagttttttttaacaatcagatcccagagtaactaatggagccagatctcattcattgccatagggagggtaccaagccacccatgagggttccacccccaggacacagacacctcccaccaggccccacctccaacactggggctcacatttcaacatgagggttggaggggatgaatgtccaaactctaccaTAGTGCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3463829 285 - 107702431 agaaagcaaaggggaagcaagtatgtcacacagtgagaacgaaagtgacaagt--------------------gaagaggaggaggaggaggagggaggcaccagagttttttttaacaatcagatcccaaagtaactaatggagccagaactcattcattgccatagggagggtaccaagccacccatgagggttccacccccaggacacagacacctcccaccaggccccacctccaacactggggctcacatttcaacatgagagttggaggggatgaatgtccaaactctaccaTAGTGCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1007740 282 + 1565135 agaaagcaaaggggaagcaagtatgtcacacagtgagaacgagagtgacaagt--------------------gaa---gaggagggggacgagggaggcaccagagttttttttaacaatcagatcccaaagtaactaatggagccagaactcattcattgccatagggagggtaccaagccacccatgagggttccacccccaggacacagacacctcccaccaggccccacctccaacactggggctcacatttcaacatgagggttggaggggatgaatgtccaaactctaccGTAGTGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3372132 279 - 13651311 agaaagcaaaggggaagcaagtatgtcacacagtgagaaagagagtgacaagt--------------------gaa---caggaggag---gagggaggcaccagagttttttttaacaatcagatcccaaggtaactaatggagccagaactcattcgttgccatagggagggtaccaagccacccatgagggttccacccccaggacacagacacctcccaccaggccccacctccaacgctggggcttacatttcaacatgagagttggaggggatgaatatccaaactctaccaTAGTGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3458517 280 - 108792865 agaaagcaaaggggaagccagtgtgtcacatgatgagaaagggagcaa-gaga--------------------ggagaggaggaggagggagggggaggcgccagg-ctgtttttaacagccactttccaaggtaactaatggagccagaactcattcattactgtagggagggcaccaagccatccataagggatccacccccaggacacagacacctcccaccaggtcccacctccaacactggggctcacattccaacatgaggtttg--ggggacgaatgtccaaactgcatcaTAGTGT- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3108417 270 - 7082604 agaaagcaaaggggaagcaagcgtgtcacatgattagaa-----------aga--------------------gaataggaggaggagggagggggaggcaccagg-ctctttttaacggccagatcccaaggtagctaatggaaccagaactcattcattactgtagggagggcactaagccatccatgagggatccacccccaggacacagacacctcccaccacgtcccacctccaacactggggctcacattccaacgtgaagtttg--ggggacgaatgtccaaactgcatcaTGGTGC- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 594153 300 + 5243153 agaaagcaaaggagaagcaagtgtgtcacatgatgagaaagggagaga-gagaagaggaggaagagggagggggagggggaggaggggggagggggaggcaccagg-ctctttttaacagccagatcccaaggtaactaatggagccagaactcattcattgctgtagggagggcaccaagccatccatgagggatccacgcccagaacacagacccctcccacccggtcccacctccaacactggggctcacattccaacatggggtttg--ggggacgaatgtccaaactGCATCATAGTGA- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1928855 239 - 1938448 ggaaagcaaaggggaagccagtgtgtcacatgatgagaaagggagcga-aaga-----------------ggagaggaggaggaggagggagggggaggcaccagg-ctctgtttaacagccagatcccaaggtgactaatggagccagaactcattcattactgtagggagggcaccaagccatccgtgagggatccgcccccaggacacagac-cctcccaccaggtcccacctccaacactggg---------------------------------------------gcatcttagtgt- i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 960631 663 + 1238772 I e dasNov3.JH580157 570774 0 + 2232271 C e otoGar3.GL873658 2539035 0 + 5252280 C a score=4540228.000000 s hg38.chr2_KI270769v1_alt 57163 527 + 120616 AAAATCTAAAAATACTAAAAGCCAGCCCACCACTATTCTGCCAGTGTTGATTTGCTGGATTAAAGTGA----------------------------ACGGCTTGGTGTGGCCTTTGATCCCCTCTGCTCTCCACTGGTGAgtaaagagagaggtcagaccagaga--ctccaggg--ttctccagcatgac-attctgattttCCCAGACC-TTCACAACTCCAGGAAATCCTCAGGAAGTCTTAAAC-TAAGGATGTGTTAGT---------------------------------GAGACCTCTCCGTCCGTGGACTGCCCTTTGCTGCATTGTTTAAAGTATTCACC-ACACCTGCCCCAAAC--CACACGCACACACACAGCTCTGCTCAGGACA-CGTGCTGTGTGTC-CCAGCACTGA-GGTGCAGTCACGTGTTAACGCTG--CATGGATGTG--TGAG-----------------------gtgctgaatgcattatgttgattaccccctactaatgcccacagcagctgcaagtgattttattatcctcggttcccagatgaggaaagtggcctcagggaggtgaagtgttccccagacaactgcagtgaggcagc----ga s panTro5.chr2A 3517754 527 + 111504155 AAAATCTAAAAATACTAAAAGGCAGCCCACCACTATTCTGCCAGTGTTGATTTGCTGGATTAAAGTGA----------------------------ACGGCTTGGTGTGGACTTCGATACCCTCTGCTCTCCACTGGTGAGTAAAGAGAGAGGTCAGACCAGAGA--CTCCAGGG--TTCTCCAGCATGAC-ATTCTGATTTTCCCAGACC-TTCGCAACTCCAGGAAATCCTCAGGAAGTCTTAAAC-TAAGGATGTGTTAGT---------------------------------GAGACCTCTCCGTCCGTGGACTGCCCTTTGCTGCATTGTTTAAAGTATTCACC-ACACCTGCCCCAAAC--CACACGCACACACACAGCTCTGCTCAGGACA-CGTGCTGTGCGTC-CCAGCACTGA-GGTGCAGTCACGTGTTAACGCTG--CATGGATGTG--TGAG-----------------------gtgctgaatgcattatgttgattaccccctactaatgcccacagcagctgcaagtgattttattatcctcggttcccagatgaggaaagtggcctcagggaggtgaagtgttccccagacaactgcagtgaggcagc----ga i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3378689 527 + 114371477 AAAATCTAAAAATACTAAAAGGCAGCCCACCACTATTCTGCCAGTGTTGATTTGCTGGATTAAAGTGA----------------------------ATGGCTTGGTGTGGACTTCGATCCCCTCTGCTCTCCACTGGTGAgtaaagagagaggtcagaccagaga--ctccaggg--ttctccagcatgac-attctgattttCCCAGACC-TTCGCAACTCCAGGAAATCCTCAGGAAGTCTTAAAC-TAAGGATGTGTTAGT---------------------------------GAGACCTCTCCGTCCGTGGACTGCCCTTTGCTGCATTGTTTAAAGTATTCACC-ACACCTGCCCCAAAC--CACACGCACACACACAGCTCTGCTCAGGACA-CGTGCTGTGCGTC-CCAGCACTGA-GGTGCAGTCACGTGTTAACGCTG--CATGGATGTG--TGAG-----------------------gtgctgaatgcattatgttgattacccccttctaatgcccacagcagctgcaagtgattttattatcctcggttcccagatgaggaaagtggcctcagggaggtgaagtgttccccagacaactgcagtgaggcagc----ga i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 256206 527 + 637652 AAAATCTAAAAATACTAAAAGCCAGCCCACCACTATTCTGCCAGTGTTGATTTGCTGGATTAAAGTGA----------------------------ACGGCTTGGTGTGGCCTTCGATCCCCTCTGCTCTCCACTGGTGAATAAAGAGAGAGGTCAGACCAGAGA--CTCCAGGG--TTCTCCAGCATGAT-GTTCTGATTTTCCCAGACC-TTCGCAACTCCAGGAAATCCTCAGGAAGTCTTAAAC-TAAGGATGTGTTAGT---------------------------------GAGACCTCTCCGTCCGTGGACTGCCCTTTGCTGCATTGTTTAAAGTATTCACC-ACACCTGCCCCAAAC--CACACGCACACACACAGCTCTGCTCAGGACA-CGTGCTTGTGGTC-CCAGCACTGA-GGTGCAGTCACGTGTTAACGCTG--CATGGATGTG--TGAG-----------------------gtgctgaatgcattatgttgattaccccctactaatgcccacagcagctgcaagtgattttattatcctcggttcccagatgaggaaagtggcctcagggaggtgaagtgtcccccagacaactgcagtgaggcagc----ga i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3053138 527 + 81552678 CAAATCTAAAAATACTAAAAGCCAGCCCACCACTATTCCACCAGCGTTGATTTGGTGGATTAAAGTGA----------------------------ACGGCTTGGTGTGGCCTTCGATCCCCTCTGCTCTCCACTGGTGAATAAAGAGGGAGGTCAGACCAGAGACTCTCCAGGG--TTCTCCAGCATGAC-GCTCTGATTTTCCCAGACC-TTCGCAACTCCAGGAAGTCCTCAGGAAGTCTTAAAC-TAAGGATGTGTTCGC---------------------------------GAGACCTCT--GTGCGTGGATTGCCCTTTGCTGCATTGTTTAAGGTATTCACC-ACACCTGCCCCAAAC--CACACGCGCGCACACAGCTCTGCTTAGGACA-CGTGCTGTGCGTC-CCAGCACTGA-GGTGCAGTCACGTGTTAATGCTG--CATGGATGTG--TGAG-----------------------gtgctgaatgcattatgttgactaccccctactaatgcccacagcaactgcaggtgattttattatcctcggttcccagatgaggaaagtggcctcagggaggtgaagtatcccccagacaactgcagtgaggcagt----ga i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3315664 523 + 108979918 AAAATCTGAAAATACTAAAAGCCAGCCCACCACTGTTCTGCCAGTGTTGATTTGGTGGATTAAAGTGA----------------------------ACAGCTTGGTGTGGCCTTCGATCCTCTCTGCTCTCCACCAGTGAATAAAGAGAGAGGTCAGACCAGAGACTCTCCAGGG--TTCTCCAGCATGACTGTTCTGATTTGCCCAGACC-TTCGCAACTCCAGGAAATCCTCAGGAAGTCTTAAAC-TAAGGATGTGTCAGC---------------------------------GAGACCGCTCCCTGTGTGGACTGCTCTTTG-TGCCTTGTTTAAAGCATTCACC-ACACCTGCCCCAAACCACACGCGCACACACACAGCTCTGCTTGGGACA-CGCACTGTGTGTC-CCAGCACTGA-GGTGCTGTCACGTGTTAACGCTG--CACGGATGt------------------------------gtgctgaatgcatcatgttgatta---cctactaatgcccacagcagctgcaggtgactttactgtcctcggttcccagatgaggaaggtggccttagggaggggaagtatccaccagacaactgcagtgaggcagc----ga i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5026803 523 - 111193037 AAAATCTGAAAATACTAAAAGCCAGCCCACCACTGTTCTGCCAGTGTTGATTTGGTGGATTAAAGTGA----------------------------ACAGCTTGGTGTGGCCTTCGATCCTCTCTGCTCTCCACCAGTGAATAAAGAGAGAGGTCAGACCAGAGACTCTCCAGGG--TTCTCCAGCATGACTGTTCTGATTTGCCCAGACC-TTCGCAACTCCAGGAAATCCTCAGGAAGTCTTAAAC-TAAGGATGTGTCAGC---------------------------------GAGACCGCTCCCTGTGTGGACTGCTCTTTG-TGCCTTGTTTAAAGCATTCACC-ACACCTGCCCCAAACCACACGCGCACACACACAGCTCTGCTTGGGACA-CGCACTGTGTGTC-CCAGCACTGA-GGTGCTATCACGTGTTAACGCTG--CACGGATGt------------------------------gtgctgaatgcatcatattgatta---cctactaatgcccacagcagctgcaggtgactttactctcctcggttcccagatgaggacggtggccttagggaggtgaagtatccaccagacaactgcagtgaggcagt----ga i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3419760 523 + 3644372 AAAATCTGAAAATACTAAAAGCCAGCCCACCACTGTTCTGCCAGTGTTGATTTGGTGGATTAAAGTGA----------------------------ACAGCTTGGTGTGGCCTTCGATCCTCTCTGCTCTCCACCAGTGAATAAAGAGAGAGGTCAGACCAGAGACTCTCCAGGG--TTCTCCAGCATGACTGTTCTGATTTGCCCAGACC-TTCGCAACTCCAGGAAATCCTCAGGAAGTCTTAAAC-TAAGGATGTGTCAGC---------------------------------GAGACCGCTCCCTGTGTGGACTGCTCTTTG-TGCCTTGTTTAAAGCATTCACC-ACACCTGCCCCAAACCACACGCGCACACACACAGCTCTGCTTGGGACA-CGCACTGTGTGTC-CCGGCACTGA-GGTGCTGTCACGTGTTAACGCTG--CACGGTTGt------------------------------gtgctgaatgcatcatattgatta---cctactaatgcccacagcagctgcaggtgactttactctcctcggttcccagatgaggacggtggccttagggaggtgaagtatccaccagacaactgcagtgaggcagt----ga i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3375219 525 - 10304083 AAAATCTGAAAATACTAAAAGCCAGCCCACCACTGTTCTGCCAGTGTTGATTTGGTGGATTAAAGTGA----------------------------ACAGCTTGGTGTGGCCTTCGATCCTCTCTGCTCTCCACTGGTGAATAAAGAGAGAGGTCAGACCAGAGACTCTCCAGGG--TTCTCCAGCATGACTGTTCTGATTTTCCCAGACC-TTCGTAACTCCAGGAAATCCTCAGAAAGTCTTAAAC-TAAGGATGTGTCAGC---------------------------------GAGACCGCTCCCTGTGTGGACTGCTCTTTG-TGCCTTGTTTAAAGTATTCACC-ACACCTGCCCCAAAC--CACGTGCACACACACAGCTCTGCTTGGGACA-CGCACTGTGTGTC-CCAGCACTGA-GGTGCTGTCGCGTGGTAACGCTG--CACGGATGt------------------------------gtgctgaatgcatcatgttgatta---cctactaatgcccacagcagccgcaggtgactttactatcctcggttcccagatgaggaaggtggccttagggaggtgaagtatccaccagacaactgcagtgaggcagtgagaga i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3464114 506 - 107702431 AAAATCTGAAAATACTAAAAGCCAGCCCACCACTGTTCTGCCAGTGTTGATTTGGTGGATTAAAGTGA----------------------------ACAGCTTGGTGTGGCCTTCGATCCTCTCTGCTCTCCACTGGTGAATAAAGAGAGAGGGCAGCCCAGAGACTCTCCAGGG--TTCTCCAGCATGACTGTTCTGATTTTCCCAGACC-TTCGTAACTCCAGGAAATCCTCAGGAAGTCTTAAAC-TAAGGATGTGTCAGC---------------------------------GAGACTGCTCCCTGTGTGGACTGCTCTTTG-TGCCTTGTTGAAAGCATTCACC-ACACCTGCCCCAAAC--CACACGCGCGCACACAGCTCTGCCTGGGACA-C----------------GCACTGA-GGTGCTGTCACGTGTTAACGCCG--CGTGGGTGt------------------------------gtgctggatgcgtcatgttgattt---cctactaatgcccacagcagctgcaggtgactttactatcctcggttcccagatgaggaaggtggccttagggaggtgaagtatccaccagacaactgcagtgaggcagt----ga i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1008022 519 + 1565135 AAAATCTGAAAATACTAAAAGCCAGCCCACCACTGTTCTGCCAGTGTTGATTTGGTGGATTAAAGTGA----------------------------ACAGCTTGGTGTGGCCTTCGATCCTCTCTGCTCTCCACCGGTGAGTAAAGAGAGAGGTCAGACCAGAGACTCTCCAGGG--TTCTCCAGCATGACTGTTCTGATTTTCCCAGACC-TTCGCAACTCCAGGAAATCCTCAGGAAGTCTTAAAC-TAAGGATGTGTCAGC---------------------------------GAGACCGCTCCCTGTTTGGACTGCTC--TG-TGCCTTGTTTAAAGCATTCACC-ACACCTGCCCCAAAC--CACGCGCACACACACAGCTCTGCTTGGGACA-CGCACTGTGTGTC-CCAGCACTGA-GGTGCTGTCACGTGCTAACGCTG--CACGGATGt------------------------------gtgctgaatgcatcatgttgatta---cctactaatgcccacagcagctgcaggtgactttactatcctcggttcccagatgaggaaggtggccttagggaggtgaagtatccaccagacaactgcagtgaggcagt----ga i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3372411 523 - 13651311 AAAATCTGAAAATACTAAAAGCCAGCCCTCCACTGTTCTGCCAGTGTTGATTTGGTGGATTAAAGTGA----------------------------ACAGCTTGGTGTGGCCTTCGATCCTCTCTGCTCTCCACTGGTGAATAAAGAGAGAGGTCAGCCCAGAGACTCTCCAGGG---TCTCCAGCATGACTGTTCTGATTGTCCCAGACC-TTTGCAACTCCAGGAAATCCTCAGGAAGTCTTAAAC-TAAGGATGTGTTAGC---------------------------------GAGACCTCTCCCGGTGTGGACTGCTCTTTGCTGCATTGTTTAAAGCATTCACC-ACACCTGCCCCAAACCACACGTGCACACACACAGCTCTGCTTGGGACA-CACGCTGTGTGTC-CCAGCACTGA-GGTGCTGTCCCGTGTTAACGCTG--CATGGATGt------------------------------gtgctgaatgcattatgttgatta---cctactaatgcccacagcagctgcaggtgatttcactatcctcggttcccagatgaggaaagtggccttagggaggtgaagcatccaccagacaactgcagtgaggcagt----ga i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3458797 563 - 108792865 GAAATCTACCAGCACGAAAAGCCAGCTTGCCACTCTTCCTTCAGTGTTGATTTGGTGGGTGAAAGTGA----------------------------GCAGCTTGGTGTGGCCTTCAGTCCCCTCTGCTCTCCACTGGTGAATAAAGAGAGAGGTCAGAC---AGAGTCTGCACGG--TTCTCCAGCATGTATGTTGTGATTTTCTCAGACC-TTGACAACTCAGGGAAATCCTCAGGACGTC--AAACCTAAGGATGAGCTAGCGAGGCCTTCACAACCCCGGGAAGATATGTTAGCGAGGCCTCTTCCTGCGTGGAGTGCTCTTTGCTGTGTTGTTTAAGGCATTCACC-ACAGCTGCCCCAAAC--------CACACACACAGC-CTGCTCGGGACA-CGTGCTGTGCGTC-CCAGCACTGA-GGCGCTGTGACATGTTGACGCTG--CATGGATGTG--CGAGgtgctttctg-gtatcgggcgccgtgccgaatgcattatgttgatca--ccctactgatgcccgcagcgcctgcaggtggctttattaccctcagttcccagatgaggaaagcagctccggggaggtgaagt-ttcccctgacgactgcagt------------ga i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3108687 561 - 7082604 GAAATCGAACCATATGAAAAGCCAGCCCGCCACTCTTCTGCCAGTGCTGATTTGGTGGATGAACGTAA----------------------------GCAGCTTGGTGTGGCCTTCGGGCCCCTCTGCTCTCCACTGGTGAATAAAGAGAGAGGTCAGACCAGAGAGTCTCCACGG--TTCTCCAGCATGAATGCTTGGATTTTCCCAGACC-TTGACAACTCAGGGAAATCCTCAGGAAGT------CTCAAGGATGTGCTAGCGAGGCCTTCACAACTCAGGGCAGATGTGTTCACGAGGCCTCTTCCTGCATGGACTGCTCTTTGCTGTGTTGTTTAAAGCATTCACC-ACAGCTGCCCCAAAC----------CACACATAGC-CTGCTCAGGACA-CGTGCTGTGCGTC-CCAGCACTGA-GGCACCGTGACATGTTGGCGCTG--CATGGATGTG--Cgagctgctttctg-gtaccgggcaccgtgccgaatgcattatgttgatca-cccctactaatgcccacagcacctccaggtggctttattatcctcagttcccaaatgaggaaagcagcttcagggaggtgatgt-ttcctctgacgaccgcagt------------ga i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 594453 559 + 5243153 GAAATCTAACAGTAAGAAGAGCCAGCCCGCCACTCTTCTGCCAGTGTTGATTTGGTGGATGAAAGTGA----------------------------GCAGCTTGGTGTGGCCTT----------TGCTCTCCACTGGTGAATAA--AGAGAAGTCAGACCAGAGAGTCTCCACAG--TTCTCCAGCATGAATGCTTTGATTTTCCCAGACC-TTGACAACTCAGGGAAACCCTCAGGAAGTCTTAAACCTAAGGACGTGCTAGCGAGGCCTTCACAGCTCAGGGAAGACGTGCTCGGGAGGCCTCTTCCTGCGTGGACTGCTCTTTGCTGTGTTGTTTAAAGCATTCACC-GCAGCTGCCCCAAGC--CA----CACACACACAGC-CTGCTCGGGACA-CATGCTGTGTGTC-CCAGCACTGA-GGTGCTATGACATGTTGGTGCTG--CATGGATGTG--CGAGATgctttctg-gtactgggcaccgtgcctaatgcattatgttgatca-cccctactaatgcctacagcacctgcaggtggttttattaccctcagttcccaggtgaggaaagcagcttcggggaggtgaagt-ttcccctgacgaccgcagt------------ga i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1929094 565 - 1938448 gaaatctAACAGTATGAAAAGCCAGCCCGCCACTCTTCTGCCAGTGTTGATTTGGTGGATGAAAGTGA----------------------------GCAGCTTGGTGTGGCCTTCGGTCCCCTCTGCTCTCCACTGGTGAATAAAGAGAGAGGTCAGACC--AGAGTCTCCACGG--TTCTCCAGCATGAATGTTTTTATTTTCCCAGACC-TTGACAACTCAGGGAAATCCTCAGGAAGTCTTAAACCTAAGGATGTGCTAGCGAGGCCTTCACAACTCGGGGAAGATGTGTTAGCGAGGCCTCTTCCTGTGTGGACTGCTCTTTGCTGTGTTGTTTAAAGCATTCACG-ACAGCTGCCCCAAAC--------CACACACACAGC-CTGCTCGGGACA-CGTGCTGTGCTTC-CCAGCACTGA-GGCGCTGTGACATGTTGACGCTG--CATGGATGTG--CGAGgtgctttctg-gtaccaggcgccgtgccgaacacattgtgttgatca-ccgcttctaatgcccgcggcacctgcaggtggttttattatcct--gttcccagatgaggaaagccgcttcagggaggtgaagt-ttcccctgacgactgcagt------------ca i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 570774 575 + 2232271 AAAATCTAGAAATA--ATAAGCCAACACACCGTTATTATGGCAGTATTGATTTGGgggactcaagagattttaatatgttacttccatttaggtctgccctttggcatgaccattgatcctctctagtttacaattgtaaat-----gagaggttagggtgaaagatctctaagagtgtgtctagcattaacattccaATTTTTTTGAATTATTGATAATTCAAGGAAACCCTTGGAAAAAGTTAAACCTAAGAGTTCATCAAAA--------------------------------GAGCTTGCTGTAGGTGTG---TCCTCTTTCCTGTTTTATTTAGAGCATTCACCTATGTACGCCCCCACC--TACATGCAAAAGTAGTTCTTTTCTTGGCTCAGTGTACTGTGTTACACTGGTGATGACGGTAATG----GTGGTGATGATAGCCatcaacatgtcttaagtacttgcagtggaataggcactgagcttaatatttcacattaactt-tcaaagttaatgctcacaatagctgtaagaga---tattatcccaaattcacctacaaggaaa-cagcctcagaggggttaagtatttcctaaaatactacaattaggtagt----gg i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 960631 663 + 1238772 I e otoGar3.GL873658 2539035 0 + 5252280 C a score=1175573.000000 s hg38.chr2_KI270769v1_alt 57690 124 + 120616 tggagcctggctgagcccca-tcacacagctccagaagcctcacccttgagcaccactctgcggttctctgTGAAATT--AGACCATCAGG--ATTGTGGT-TTTTTCCTCCAAATACAGACTTTTCTCT s panTro5.chr2A 3518281 124 + 111504155 tggagcctggctgagcccca-tcacacagctccagaagcctcacccttgagcaccactctgcggttctctgTGAAATT--AGACCATCAGG--ATTGTGGT-TTTTTCCTCCAAATACAGACTTTTCTCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3379216 124 + 114371477 tggagcctggctgagcccca-tcacacagctccagaagcctcacccttgagcaccactctgcggttctctgTGAAATT--AGACCATCAGG--ATTGTGGT-TTTTTCCTCCAAATACAGACTTTTCTCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 256733 122 + 637652 tggagcctggctgagcccca-tcacacagctccagaagcctcacccttgagcaccactctgcggttctctgTGAAATT--AGACCATCAGG--ATTGTGGT-TTTT--CCCCAAATACAGACTTTTCTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3053665 122 + 81552678 tggagcctggctgagcccca-tcacacagctccagaagcctcgcccttgagcaccactctgcggttctc--tgAAATT--AGACCATCAGG--ATTGTGGT-TTTTTCCTCCAGATACAGAATTTTCTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3316187 123 + 108979918 gcgagcctggctgagcccca-ccgcacagctccagaagcctcgcccttGAGCACCAGTCTACGGTTCTCTGGG-AATT--AGACCATCAGG--ATTGGGGT-TTTTTCCTCCACATACAGACTTTTCTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5027326 122 - 111193037 gcgagcctggctgagcccc--ccacacagctccagaagcctcgcccttGAGCACCAGTCTACGGTTCTCTGGG-AATT--AGACCATCAGG--ATTGGGGT-TTTTTCCTCCAAATACAGACTTTTCTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3420283 122 + 3644372 gcgagcctggctgagcccc--ccacacagctccagaagcctcgcccttGAGCACCAGTCTGCGGTTCTCTGGG-AATT--AGACCATCAGG--ATTGGGGT-TTTTTCCTCCAAATACAGACTTTTCTCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3375744 123 - 10304083 gcgagcctggctgagcccca-ccacacagctccagaagcctcgcccttgaccaccaGTCTGCGGTTCTCTGTG-AATT--AGACCATCAGG--ATTGGGGT-TTTTTCCTCCAAATACAGACTTTTCTCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3464620 123 - 107702431 gagagcctggctgagcccca-ccacgcagctccagaagcctcacccttgaccaccaGTCTGCGGTTCTCTGTG-AATT--AGACCATCAGG--ATTGGGGT-TTTTTCCTCCAAATACAGACTTTTCTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1008541 123 + 1565135 gagagcctggctgagcccca-ccacacagctccagaagcctcgcccttgaccaccaGTCTGCGGTTCTCTGTG-AATT--AGACCATCAGG--ATTGGGGT-TTTTTCCTCCAAATACAGACTTTTCTCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3372934 123 - 13651311 gagggcctggctgagcccca-ccacacagctccagaagcctcgtcctTGACCACCAGTCTGCGGTTCTCTGTG-AATT--AGACCATCAGG--ACTGGGGT-TTTTTCCTCCAAATACAGACTTTTCTCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3459360 123 - 108792865 tggagcctggctgagccctg-ccacacagctccagaaacctcacccttgag--ccactctgctgttctCTGTGCAATT--AGACTTTCAAG--AGTGTGGCTTTTTTCCTCCAAATACAAAATCTTCTCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3109248 123 - 7082604 tggagcctggctgagccccg-ccacacagttctggaaacctcacacttgag--ccactctgctgttctCTGTGCAGTT-AAGACTATCAAG--AATGTGGC-TTTTTCCTCCAAATACAAAATCTTCTCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 595012 123 + 5243153 tggagcctggctgagcccgg-ccacacagctccagaaacctcgcccttgag--ccactctgctgttctCTGTGCAGTT--AGACTATCAAG--AGTGTGGCTTTTTTCCTCCAAATACAAAATATTCTCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1929659 123 - 1938448 tggagcctggctgagccccg-ccacacagctccagaaacctcgcccttgag--ccactctgctgttctCTGTGCAATT--CGACTATCAAG--AGTGTGGCTTTTTTCCTCCAAATACAAACTCTTCTCT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2539035 127 + 5252280 tgaagcccaccttaggctgagccactgggctccagaagcctcttccttgagcaccactccgcagtgctctGTGAAGCT--GGGCCACCAAAGTACTACATT-TCTTCTCTCCCAGTGCACTTCCTTCCCT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 571349 119 + 2232271 tggagcctagattagct----ttacatgactctagaaacgtcatcattaatcactaccctgtGTTTATCTGTC-ATTTTAAGACTAT---G--AGTCCTTT-CTTTCTCATGAAGTACCATCCATTCCCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 960631 663 + 1238772 I a score=1865594.000000 s hg38.chr2_KI270769v1_alt 57814 166 + 120616 GATGCTTTGTAAAGCAGGGGCTCTAAAGTTTGGTCTTAAGCGTCACTTGAACAGTTCCAGAAATTTTAGCAA-TCTCTACTGCACTTGCTCCTGCCAAAAATTGCTCTCAGTAGATTCAGGGAAC--TGTGGACTCTTCCAGTGGGTGAGGAGAGTCAAACAGAGTGAA s panTro5.chr2A 3518405 162 + 111504155 GATGCTTTGTAAAGCAGGGGCTCTAAAGTTTGGTCTTAAACGTCACTTGAACAGTTCCAGAAATTTTAGCAA-TCTCTACTGCACTTGCTCCTGCCAAAAATTGCTCTCAGTAGATTCAGGGAAC--TGCGGACTCTTCCAGTGGGTGAGGAGAGT----CAGAGTGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3379340 162 + 114371477 GATGCTTTGTAAAGCAGGGGCTCTAAAGTTTGGTCTTAAACGTCACTTGAACAGTTCCAGAAATTTTAGCAA-TCTCTACTGCACTTGCTCCTGCCAAAAATTGCTCTCAGTAGATTCAGGGAAC--TGCGGACTCTTCCAGTGGGTGAGGAGAGT----CAGAGTGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 256855 164 + 637652 GATGCTTTGTAAAGCAGAGGCTCTAAAATTTGGTCTTAAGCGTCACTTGAACAGTTCCAGAAATTTTAGCAA-TCTCTACTGCATTTGCTCCTGCCAAAAATTGCTCTCAGTAGATTCAGGGAACTGTGTGGACTCTTCCAGTGGGTGAGGAGAGT----CAGAGTGAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3053787 162 + 81552678 GAGGCTTTGTAAAGCAGGGGCTCTCAAGTTTGGTCTTAAGCGTCACTTGAACAGTTCCAGAAATTTTAGCAA-TCCCTACTGCACTTGCTCCTGCCAAAAATTGCTCTCAGTAGGTTCAGGGAAC--CGTGGACTCTTCCAGTGGGTGAGGAGAGT----CAGAGTGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3316310 166 + 108979918 GCTGCCTTGTGAAGCAGGGGCTCTAAAGTTTGGTGTTAAGCGTCACTTGAACAGTTCCAGAAATTTTAGCAA-TCCCGACGGCACTTGCTCCTGCCAAAAACTGTTCTCAGTCGGTTCAGGGAAC--TGTGAGCTCTTCCAGTGGGTGAGGAGAGTCAAGCAGAGTGAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5027448 166 - 111193037 GCTGCCTTGTAAAGCAGGGGCTCTAAAGTTTGGTGTTAAGCGTCACTTGAACAGTTCCAGAAATTTTAGCAA-TCCCGACGGCACTTGCTCCTGCCAAAAACTGTTCTCAGTCGGTTCAGGGAAC--TGTGAGCTCTTCCAGTGGGTGAGGAGAGTCAAGCAGAGTGAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3420405 166 + 3644372 GCTGCCTTGTAAAGCAGGGGCTCTAAAGTTTGGTGTTAAGCGTCACTTGAACAGTTCCAGAAATTTTAGCAA-TCCCGACGGCACTTGCTCCTGCCAAAAACTGTTCTCAGTCGGTTCAGGGAAC--TGTGAGCTCTTCCAGTGGGTGAGGAGAGTCAAGCAGAGTGAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3375867 163 - 10304083 GCTGCCTTGTAAAGCAGGGGCTCTAAAGTTTGGGGTTAAGCGTCACTTGAACAGTTCCAGAAATTTTAGCAA-TCCCGACGGCACTTGCTCCTGCCAAAAATTGTTCTCAGTCGGTTCAGGGAAC----TGAACTCTT-CAGTGGGTGAGGAGAGTCAAGCAGAGTGAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3464743 151 - 107702431 GCTGCCTTGTAAAGCAGGGGCTCTAAAGTTTGGTGTTAAGCATCACTTGAACAGTTCCAGAAATTTTAGCAA-TCCCAACCGCACTTGCTC---------------CTCAGTAGGTTCAGGGAAC--TGTGAACTCTTCCAGTGGGTGAGGAGAGTCAAGCAGAGTGAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1008664 165 + 1565135 GCTGCCTTGTAAAGCAGGGGCTCTAAAGTTTGGGGTTAAGCGTCACTTGAACAGTTCCAGAAATTTTAGCAA-TCCCGACTGCACTTGCTCCTGCCAAAAATTGTTCTCAGTCGGTTCAGGGAAC--TGTGAACTCTTCCAGT-GGTGAGGAGAGTCAAGCAGAGTGAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3373057 166 - 13651311 GATGCCTTGTAAAGCAGGGGCTTTAAAGTTTGGTGTTAAGCGTCACTTGAACAGTTCCAGAAATTTTAGCAA-TCCCGACCGCACTTGCTCCTGCCAAAAATTGTTCTCAGTAGGTTCAGGGAAC--TGTGAACTCTTCCAGTGGGTGAGGAGAGTCAAGCAGAGTGAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3459483 166 - 108792865 GATGCCTTTTAAAGCAGAGGCTCTAATGTTTGGTGTTAAGTGTCATTTAAACAGTTACAGAAATTTCAGCAA-TCCCTACTGCACTTGCTCCTGCCAAAAACTAGTCTCAGTGGTTTCTGGGAAC--TATGGACTCTTCCAGTGGGTGCGGAGAGTCAAGCAGAGTGAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3109371 166 - 7082604 GATGCCTTTTAAAGCAGGGGCTCTAACGTTTGATCTTAAGTGTCACTTAAACAGTTACAGAAATTTCAGCAA-TCCCTACCGCACTTGCTTCTGCCAAAAACTAGTCTCAGTAGTTTCAGGGAAG--TATGGACTCTTCCATTGGGTGCGGAGAGTGAAGCAGAGTGAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 595135 165 + 5243153 GATGCCTTTTAAAGCAGGGACTCCAACGTTTGATCTTAAGTGTCACTTAAACAGTTACAGAAATTTCAGTAA-TCCCTACTGCACTTGCTTCTGCCAAAAACTAGTCTCAGTAGTTTCAGGGAAC--TGTGGACTCTTCCAGT-GGTGTGGAGAGTCAAGCAGAGTGAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1929782 165 - 1938448 GATGCCTTTTAAAGCAGGAGCTCTAACGTTTGGTCTTAAGTGTCA-TTAAACAGTTACAGAAATTTCAGCAA-TCCCTACTGCACTTGCTCCTGCCAAAAACTAGTCTCAGTCGTTTCAGAGAAC--TATGGACTCTTCCAGTGGGTGCGGAGAGTCAAGCAGCGTGAA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 961294 167 + 1238772 GATGCCTTATAAAGCAGCAGCTCTAAAGTTTGGTCTTATCTATCAATTTGACGGTGCCAGAAATTCTGGCAACTCCCTACTGCATTTGCTTTTGCCAAAAATTGGCTCCCATAGTCGCAGGGAAC--TGTGGACTCTCTAAATGGGTGAGGAGAGTCCAGCAGAGTGAG i proCoq1.NW_012151163v1 I 663 C 0 s otoGar3.GL873658 2539162 165 + 5252280 GATGCCTTATAAAGCAGCAGTTACTAAGTTTAGTTCTATCTACCAATTTGATGGTGCCAGAAATTTTAGCAGCTCCCTACTGCATTTGTTCTTGCCAACAATTGGGTTCAGCAGGTGCAGGGATC--TGTGGA--CTCTAAGTGGATGCGGAGAGTCTGGCCAAGAGAA i otoGar3.GL873658 C 0 I 1550 s dasNov3.JH580157 571468 156 + 2232271 GGTGCCTTATAGAGTAGTGGTACTGAACTTTGGTCTTATGTATCATTTG-ACAGTACCAAAAAAT------A-TACCTACTGTACTTGCTTTTGCCAAAAATTGGTCCCAGTAGGTACAGGGAAC--TGTAGACTCTTGAAATGGGAGAAGACAATCAA--AGAGGGA- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I a score=79281.000000 s hg38.chr2_KI270769v1_alt 57980 7 + 120616 AAGAAAT s panTro5.chr2A 3518567 7 + 111504155 AAGAAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3379502 7 + 114371477 AAGAAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 257019 7 + 637652 AAGAAAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3053949 7 + 81552678 AAGAAAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3316476 7 + 108979918 AAGAAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5027614 7 - 111193037 AAGAAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3420571 7 + 3644372 AAGAAAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3376030 7 - 10304083 AAGAAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3464894 7 - 107702431 AAGAAAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1008829 7 + 1565135 AAGAAAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3373223 7 - 13651311 AAGAAAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3459649 7 - 108792865 AATAAAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3109537 6 - 7082604 AA-AAAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 595300 7 + 5243153 CAGAAAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1929947 7 - 1938448 AAGAAAT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 961461 7 + 1238772 AAGAAAT i proCoq1.NW_012151163v1 C 0 I 1626 s dasNov3.JH580157 571624 7 + 2232271 AAGATAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e otoGar3.GL873658 2539327 1550 + 5252280 I a score=560829.000000 s hg38.chr2_KI270769v1_alt 57987 55 + 120616 GAGTC------CAGAATGTTAAACAT-GATTTCCTTTGGTGCCGTTTTCCATTAGCTCCTCC s panTro5.chr2A 3518574 55 + 111504155 GAGTC------CAGAATGTTAAACAT-GATTTCCTTTGGTGCCGTTTTCCATTAGCTCCTCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3379509 55 + 114371477 GAGTC------CAGAATGTTAAACAT-GATTTCCTTTGGTGCCGTTTTCCATTAGCTCCTCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 257026 55 + 637652 GAGTC------CAGAATGTTAAACAT-GATTTCCTTTGGTGCCGTTTTCCATTAGCTCCTCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3053956 55 + 81552678 GAGTC------TAAAATGTTAAACAT-TCTTTCCTTCGGTGCCATTTTCCATTAGCTCCTCC i nomLeu3.chr19 C 0 I 996 s rheMac8.chr13 3316483 55 + 108979918 GAGTC------TAGAATGTTAAACAT-TAGTTCCTTTGGTGCCATTTTCCGTTAGCTCCTCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5027621 55 - 111193037 GAGTC------TAGAATGTTAAACAT-TAGTTCCTTTGGTGCCATTTTCCGTTAGCTCCTCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3420578 55 + 3644372 GAGTC------TAGAATGTTAAACAT-TAGTTCCTTTGGTGCCATTTTCCGTTAGCTCCTCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3376037 55 - 10304083 GAGTC------TAGAATGTTAAACAT-TATTTCCTTTGGTGCCATTTTCCGTTAGCTCCTCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3464901 55 - 107702431 GAGTC------TAGAATGTTAAACAT-TATTTCCTTTGGTGCCATTTTCTGTTAGCTCCTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1008836 55 + 1565135 GAGTC------TAGAATGTTAAACAT-TATTTCCTTTGGTGCCATTTTCCATTAGCTCCTCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3373230 55 - 13651311 GAGTC------TAGAATGTTAAACAT-TATTTCCTTTGGTGCCATTTTCCATTAGTTCCTCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3459656 60 - 108792865 TAGTCTAGAATTAGAATGTTAAACAT--GTTTCCTTTGGTGCCATTTTCCGTTAGTTCCTCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3109543 54 - 7082604 GAGTC------TAGAATGTTAAACAT--ATTTCCTTTGGTGCCATTTTCCGTTAGCTCCTCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 595307 54 + 5243153 TGGTC------CAGAAGATTAAACAT--ATTTCCTTTGGTGCCATTTTCCGTTAGCTCCTCC i cebCap1.NW_016107454v1 C 0 I 1275 s aotNan1.NW_018507213v1 1929954 54 - 1938448 TAGTC------TAGAATGTTAAACAT--ATTTCCTTTGGTGCCATTTTCCGTTAGCTCTTCC i aotNan1.NW_018507213v1 C 0 I 1251 s dasNov3.JH580157 571631 56 + 2232271 TAGTC------AAGAATGTTAAATATATATGCCCTGCAGTGAAACTTTCCATTAATTCCTCC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e otoGar3.GL873658 2539327 1550 + 5252280 I a score=23562.000000 s hg38.chr2_KI270769v1_alt 58042 3 + 120616 TCC s panTro5.chr2A 3518629 3 + 111504155 TCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3379564 3 + 114371477 TCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 257081 3 + 637652 TCC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3316538 3 + 108979918 TCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5027676 3 - 111193037 TCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3420633 3 + 3644372 TCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3376092 3 - 10304083 TCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3464956 3 - 107702431 TCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1008891 3 + 1565135 TCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3373285 3 - 13651311 TCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3459716 3 - 108792865 CCC i calJac3.chr14 C 0 I 1170 s saiBol1.JH378218 3109597 3 - 7082604 CCC i saiBol1.JH378218 C 0 I 1156 s dasNov3.JH580157 571687 3 + 2232271 TCC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e nomLeu3.chr19 3054011 996 + 81552678 I a score=6600.000000 s hg38.chr2_KI270769v1_alt 58045 1 + 120616 C s panTro5.chr2A 3518632 1 + 111504155 C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3379567 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 257084 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3316541 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5027679 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3420636 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3376095 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3464959 1 - 107702431 C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1008894 1 + 1565135 C i manLeu1.NW_012104432v1 C 0 I 1234 s colAng1.NW_012118821v1 3373288 1 - 13651311 C i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 571690 1 + 2232271 C i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e saiBol1.JH378218 3109600 1156 - 7082604 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e calJac3.chr14 3459719 1170 - 108792865 I e nomLeu3.chr19 3054011 996 + 81552678 I a score=8860.000000 s hg38.chr2_KI270769v1_alt 58046 2 + 120616 GC s panTro5.chr2A 3518633 2 + 111504155 GC i panTro5.chr2A C 0 I 1223 s panPan2.chr2A 3379568 2 + 114371477 GC i panPan2.chr2A C 0 I 1223 s gorGor5.CYUI01015435v1 257085 2 + 637652 GC i gorGor5.CYUI01015435v1 C 0 I 1340 s rheMac8.chr13 3316542 2 + 108979918 GC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5027680 2 - 111193037 GC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3420637 2 + 3644372 GC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3376096 2 - 10304083 GC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3464960 2 - 107702431 GC i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3373289 2 - 13651311 GC i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 571691 2 + 2232271 TC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e saiBol1.JH378218 3109600 1156 - 7082604 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e calJac3.chr14 3459719 1170 - 108792865 I e manLeu1.NW_012104432v1 1008895 1234 + 1565135 I e nomLeu3.chr19 3054011 996 + 81552678 I a score=5005.000000 s hg38.chr2_KI270769v1_alt 58048 1 + 120616 A s panTro5.chr2A 3519858 1 + 111504155 A i panTro5.chr2A I 1223 C 0 s panPan2.chr2A 3380793 1 + 114371477 A i panPan2.chr2A I 1223 C 0 s gorGor5.CYUI01015435v1 258427 1 + 637652 A i gorGor5.CYUI01015435v1 I 1340 C 0 s rheMac8.chr13 3316544 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5027682 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3420639 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3376098 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3464962 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3373291 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 571693 1 + 2232271 A i dasNov3.JH580157 C 0 I 1766 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e saiBol1.JH378218 3109600 1156 - 7082604 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e calJac3.chr14 3459719 1170 - 108792865 I e manLeu1.NW_012104432v1 1008895 1234 + 1565135 I e nomLeu3.chr19 3054011 996 + 81552678 I a score=4500.000000 s hg38.chr2_KI270769v1_alt 58049 1 + 120616 G s panTro5.chr2A 3519859 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3380794 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258428 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3316545 1 + 108979918 G i rheMac8.chr13 C 0 I 1234 s macFas5.chr13 5027683 1 - 111193037 G i macFas5.chr13 C 0 I 1205 s macNem1.NW_012011978v1 3420640 1 + 3644372 G i macNem1.NW_012011978v1 C 0 I 1234 s cerAty1.NW_012000820v1 3376099 1 - 10304083 G i cerAty1.NW_012000820v1 C 0 I 1230 s chlSab2.chr14 3464963 1 - 107702431 G i chlSab2.chr14 C 0 I 1219 s colAng1.NW_012118821v1 3373292 1 - 13651311 G i colAng1.NW_012118821v1 C 0 I 1234 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e saiBol1.JH378218 3109600 1156 - 7082604 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e dasNov3.JH580157 571694 1766 + 2232271 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e calJac3.chr14 3459719 1170 - 108792865 I e manLeu1.NW_012104432v1 1008895 1234 + 1565135 I e nomLeu3.chr19 3054011 996 + 81552678 I a score=26015.000000 s hg38.chr2_KI270769v1_alt 58050 54 + 120616 GGCGTGGAGAGCAGCCG--GTTACTCGAGGGTAGGGCGTCTAGAGCAGCCGGTTAC s panTro5.chr2A 3519860 54 + 111504155 GGCGTGGAGAGCAGCCG--GTTACGCGAGGGTAGGGCGTGGAGAGCAGCCGGTTAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3380795 54 + 114371477 GGCGTGGAGAGCAGCCG--GTTACGGGAGGGTAGGGCGTGGAGAGCAGCCGGTTAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258429 56 + 637652 GGCGTGGCGAGCAGCCGGTGTTACTCGAGGGTAGGGCGTGGCGAGCAGCCGGTTAC i gorGor5.CYUI01015435v1 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e saiBol1.JH378218 3109600 1156 - 7082604 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e dasNov3.JH580157 571694 1766 + 2232271 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e calJac3.chr14 3459719 1170 - 108792865 I e colAng1.NW_012118821v1 3373293 1234 - 13651311 I e manLeu1.NW_012104432v1 1008895 1234 + 1565135 I e chlSab2.chr14 3464964 1219 - 107702431 I e cerAty1.NW_012000820v1 3376100 1230 - 10304083 I e macNem1.NW_012011978v1 3420641 1234 + 3644372 I e macFas5.chr13 5027684 1205 - 111193037 I e rheMac8.chr13 3316546 1234 + 108979918 I e nomLeu3.chr19 3054011 996 + 81552678 I a score=41922.000000 s hg38.chr2_KI270769v1_alt 58104 64 + 120616 GCGAGGGTAGGGCGTGGAGAGCAGCCGGTTACGCGA-GGGTAGGGCGTGGAGAGCAGCCGGTTAC s panTro5.chr2A 3519914 62 + 111504155 TCGAGGGTAGGGCGTGGAGA-CAGCCGGTTACGC-A-TGGTAGGGCGTGGAGAGCAGCCGGTTAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3380849 65 + 114371477 TCGAGGGTAGGGCGTGGAGAGCAGCCGGTTACTCGACGGGTAGGGCGTGGAGAGCAGCCGGTTAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258485 64 + 637652 GCGAGGGTAGGGCGTGGCGAGCAGCCGGTTATGCGA-GGGTAGGGCGTGGCGAGCAGCCGGTTAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055007 64 + 81552678 GCGAAAATGAAGCCCAGAGAACAGCCGGTGACGCGA-GGGTAGAATGTGGAGAGCAGCCGGTGAC i nomLeu3.chr19 I 996 T 64 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e saiBol1.JH378218 3109600 1156 - 7082604 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e dasNov3.JH580157 571694 1766 + 2232271 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e calJac3.chr14 3459719 1170 - 108792865 I e colAng1.NW_012118821v1 3373293 1234 - 13651311 I e manLeu1.NW_012104432v1 1008895 1234 + 1565135 I e chlSab2.chr14 3464964 1219 - 107702431 I e cerAty1.NW_012000820v1 3376100 1230 - 10304083 I e macNem1.NW_012011978v1 3420641 1234 + 3644372 I e macFas5.chr13 5027684 1205 - 111193037 I e rheMac8.chr13 3316546 1234 + 108979918 I a score=144.000000 s hg38.chr2_KI270769v1_alt 58168 1 + 120616 G s panTro5.chr2A 3519976 1 + 111504155 G i panTro5.chr2A C 0 I 158 s panPan2.chr2A 3380914 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258549 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 I 98 s nomLeu3.chr19 3055007 1 + 81552678 G i nomLeu3.chr19 T 64 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e saiBol1.JH378218 3109600 1156 - 7082604 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e dasNov3.JH580157 571694 1766 + 2232271 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e calJac3.chr14 3459719 1170 - 108792865 I e colAng1.NW_012118821v1 3373293 1234 - 13651311 I e manLeu1.NW_012104432v1 1008895 1234 + 1565135 I e chlSab2.chr14 3464964 1219 - 107702431 I e cerAty1.NW_012000820v1 3376100 1230 - 10304083 I e macNem1.NW_012011978v1 3420641 1234 + 3644372 I e macFas5.chr13 5027684 1205 - 111193037 I e rheMac8.chr13 3316546 1234 + 108979918 I a score=33514.000000 s hg38.chr2_KI270769v1_alt 58169 46 + 120616 CGAGGGTAGGGCGTGGAGAGCAGCCGGTTACGCGAGGGTAGGGCGT s panTro5.chr2A 3520135 46 + 111504155 CGAGGGTAGGGCGTCTAGAGCAGCCGGTTACGCGAGGGTAGGGCGT i panTro5.chr2A I 158 C 0 s panPan2.chr2A 3380915 46 + 114371477 CGAGGGTAGGGCGTGGAGAGCAGCCGGTTACTCGAGGGTAGGGCGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258648 46 + 637652 CGAGGGTAGGGCGTGGCGAGCAGCCGGTTACGCGAGGGTAGGGCGT i gorGor5.CYUI01015435v1 I 98 C 0 s nomLeu3.chr19 3055008 46 + 81552678 CGAAAATGAAGCCCAGAGAACAGCCGGTGACGCGAGGGTAGAATGT i nomLeu3.chr19 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e saiBol1.JH378218 3109600 1156 - 7082604 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e dasNov3.JH580157 571694 1766 + 2232271 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e calJac3.chr14 3459719 1170 - 108792865 I e colAng1.NW_012118821v1 3373293 1234 - 13651311 I e manLeu1.NW_012104432v1 1008895 1234 + 1565135 I e chlSab2.chr14 3464964 1219 - 107702431 I e cerAty1.NW_012000820v1 3376100 1230 - 10304083 I e macNem1.NW_012011978v1 3420641 1234 + 3644372 I e macFas5.chr13 5027684 1205 - 111193037 I e rheMac8.chr13 3316546 1234 + 108979918 I a score=1500.000000 s hg38.chr2_KI270769v1_alt 58215 1 + 120616 G s panTro5.chr2A 3520181 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3380961 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258694 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055054 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s saiBol1.JH378218 3110756 1 - 7082604 G i saiBol1.JH378218 I 1156 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e dasNov3.JH580157 571694 1766 + 2232271 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e calJac3.chr14 3459719 1170 - 108792865 I e colAng1.NW_012118821v1 3373293 1234 - 13651311 I e manLeu1.NW_012104432v1 1008895 1234 + 1565135 I e chlSab2.chr14 3464964 1219 - 107702431 I e cerAty1.NW_012000820v1 3376100 1230 - 10304083 I e macNem1.NW_012011978v1 3420641 1234 + 3644372 I e macFas5.chr13 5027684 1205 - 111193037 I e rheMac8.chr13 3316546 1234 + 108979918 I a score=18465.000000 s hg38.chr2_KI270769v1_alt 58216 17 + 120616 GAGAGCAGC--------CGGTTACG s panTro5.chr2A 3520182 17 + 111504155 GAGAGCAGC--------CGGTTACG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3380962 17 + 114371477 GAGAGCAGC--------CGGTTACG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258695 25 + 637652 GAGAGCAGCCGGTTACGCGGTTACG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055055 17 + 81552678 GAGAGCAGC--------CGGTGACG i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5028889 14 - 111193037 GAGAACAGC--------CAGTC--- i macFas5.chr13 I 1205 C 0 s saiBol1.JH378218 3110757 17 - 7082604 GGGTACAGC--------CAGTTAAG i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e dasNov3.JH580157 571694 1766 + 2232271 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e calJac3.chr14 3459719 1170 - 108792865 I e colAng1.NW_012118821v1 3373293 1234 - 13651311 I e manLeu1.NW_012104432v1 1008895 1234 + 1565135 I e chlSab2.chr14 3464964 1219 - 107702431 I e cerAty1.NW_012000820v1 3376100 1230 - 10304083 I e macNem1.NW_012011978v1 3420641 1234 + 3644372 I e rheMac8.chr13 3316546 1234 + 108979918 I a score=8570.000000 s hg38.chr2_KI270769v1_alt 58233 8 + 120616 CGGTTACA s panTro5.chr2A 3520199 8 + 111504155 CGGTTACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3380979 8 + 114371477 CGGTTACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258720 8 + 637652 CGGTTACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055072 8 + 81552678 CGGTTACA i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5028903 2 - 111193037 CG------ i macFas5.chr13 C 0 C 0 s calJac3.chr14 3460889 8 - 108792865 CGGTTACG i calJac3.chr14 I 1170 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e saiBol1.JH378218 3110774 0 - 7082604 C e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e dasNov3.JH580157 571694 1766 + 2232271 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e colAng1.NW_012118821v1 3373293 1234 - 13651311 I e manLeu1.NW_012104432v1 1008895 1234 + 1565135 I e chlSab2.chr14 3464964 1219 - 107702431 I e cerAty1.NW_012000820v1 3376100 1230 - 10304083 I e macNem1.NW_012011978v1 3420641 1234 + 3644372 I e rheMac8.chr13 3316546 1234 + 108979918 I a score=36493.000000 s hg38.chr2_KI270769v1_alt 58241 14 + 120616 CGAGGGCGGAGGGC s panTro5.chr2A 3520207 14 + 111504155 CGAGGGCGGAGGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3380987 14 + 114371477 CGAGGGCGGAGGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258728 14 + 637652 CGACGGCGGAGGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055080 14 + 81552678 CGAGGGCGGAGGGC i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5028905 13 - 111193037 CGAGGGCAGAGGG- i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3466183 13 - 107702431 CGAGGGCGGAGGG- i chlSab2.chr14 I 1219 C 0 s calJac3.chr14 3460897 14 - 108792865 TGAGGGCGGAGGGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3110774 14 - 7082604 CAAGGGCAGAGGGC i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e dasNov3.JH580157 571694 1766 + 2232271 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e colAng1.NW_012118821v1 3373293 1234 - 13651311 I e manLeu1.NW_012104432v1 1008895 1234 + 1565135 I e cerAty1.NW_012000820v1 3376100 1230 - 10304083 I e macNem1.NW_012011978v1 3420641 1234 + 3644372 I e rheMac8.chr13 3316546 1234 + 108979918 I a score=1840.000000 s hg38.chr2_KI270769v1_alt 58255 2 + 120616 GT s panTro5.chr2A 3520221 2 + 111504155 GT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381001 2 + 114371477 GT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258742 2 + 637652 GT i gorGor5.CYUI01015435v1 C 0 C 0 s calJac3.chr14 3460911 2 - 108792865 GG i calJac3.chr14 C 0 C 0 s dasNov3.JH580157 573460 2 + 2232271 gt i dasNov3.JH580157 I 1766 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e saiBol1.JH378218 3110788 0 - 7082604 C e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e colAng1.NW_012118821v1 3373293 1234 - 13651311 I e manLeu1.NW_012104432v1 1008895 1234 + 1565135 I e chlSab2.chr14 3466196 0 - 107702431 C e cerAty1.NW_012000820v1 3376100 1230 - 10304083 I e macNem1.NW_012011978v1 3420641 1234 + 3644372 I e macFas5.chr13 5028918 0 - 111193037 C e rheMac8.chr13 3316546 1234 + 108979918 I e nomLeu3.chr19 3055094 0 + 81552678 C a score=413502.000000 s hg38.chr2_KI270769v1_alt 58257 74 + 120616 GTGCCGGGAGCACAATCCGGGCCGAGGCTCCTGGTAAG-GGAGC----AGAGCGGGAAGCTGATCCCCCAC-GGATTCTT s panTro5.chr2A 3520223 74 + 111504155 GTGCCGGGAGCACAATCCGGGCCGAGGCTCCTGGTAAG-GGAGC----AGAGCGGGAAGCTGATCCCCCAC-GGATTCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381003 74 + 114371477 GTGCCGGGAGCACAATCCGGGCCGAGGCTCCTGGTAAG-GGAGC----AGAGCGGGAAGCTGATCCCCCAC-GGATTCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258744 74 + 637652 GTGCCGGGAGCACAATCCGGGCCGAGGCTCCTGGTAAG-GGAGC----AGAGCGGGAAGCTGATCCCCCAC-GGATTCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055094 74 + 81552678 GTGCCGGGAGCACAATCCGGGCCGAGGCTCCTGGTAAG-GGAGC----AGAGCGGGAAGCTGATCCCCCAC-GGATTCTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3317780 78 + 108979918 GTGCCGGGAGCACGCTCTGGGCCGAGGCTCCTGGTAAG-GGAGCGAGCGGAGCGGGAAGCTGAACCCCCAC-GTATGCTC i rheMac8.chr13 I 1234 C 0 s macFas5.chr13 5028918 78 - 111193037 GTGCCGGGAGCACGCTCTGGGCCGAGGCTCCTGGTAAG-GGAGCCAGCGGAGCGGGAAGCTGAACCCCCAC-GTATTCTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3421875 78 + 3644372 GTGCCGGGAGCACGCTCTGGGCCGAGGCTCCTGGTAAG-GGAGCGAGCGGAGCGGGAAGCTGAACCCCCAC-GTATTCTC i macNem1.NW_012011978v1 I 1234 C 0 s cerAty1.NW_012000820v1 3377330 78 - 10304083 GTGCCGGGAGCACGCTCTGGGCCGAGTCTCCTGGTAAG-GGAGCAAGCGGAGCGGGAAGCTGAACCCCCAC-GGATTCTC i cerAty1.NW_012000820v1 I 1230 C 0 s chlSab2.chr14 3466196 78 - 107702431 GTGCCGGGAGCACGCTCTGGGCCGAGGCTCCTGGTAAG-GGAGCGAGTGGAGCGGGAAGCTGAACCCCCAC-GGATTCTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010129 78 + 1565135 GTGCGGGGAGCACGCTCTGGGCCGAGGCTCCTGGTAAG-GGAGCGAGCGGAGCGGGAAGCTGAACCCCCAC-GGATTTTC i manLeu1.NW_012104432v1 I 1234 C 0 s colAng1.NW_012118821v1 3374527 78 - 13651311 GTGCCGGGAGCACGCTCTGGGCCGAGGCTCCTGGTAAG-GGAGCGAACAGAGCGGGAAGCTGAACCCCCAC-GGATTCTC i colAng1.NW_012118821v1 I 1234 C 0 s calJac3.chr14 3460913 51 - 108792865 ------------------GGGGCGGGG-----GGT-GG-AGGGC----GTGCCGAGAAAGTGGAGCCCCACGGGACTCTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3110788 39 - 7082604 ------------------------------------GG-AGGGC----GTGCCAGGAAAGGGGAGCCCCATGGGACTCTC i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 573462 75 + 2232271 atgccaaaagcagatttggtactgaggccctaagtaagcaaagc----aaaagagaaacataaccaattac-aggtttct i dasNov3.JH580157 C 0 I 30 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e otoGar3.GL873658 2539327 1550 + 5252280 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I a score=4561.000000 s hg38.chr2_KI270769v1_alt 58331 2 + 120616 AG s panTro5.chr2A 3520297 2 + 111504155 AG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381077 2 + 114371477 AG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258818 1 + 637652 A- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055168 2 + 81552678 AG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3317858 2 + 108979918 AG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5028996 2 - 111193037 AG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3421953 2 + 3644372 AG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3377408 2 - 10304083 AG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466274 2 - 107702431 AG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010207 2 + 1565135 AG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3374605 2 - 13651311 AG i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2540877 1 + 5252280 A- i otoGar3.GL873658 I 1550 C 0 s dasNov3.JH580157 573567 2 + 2232271 AG i dasNov3.JH580157 I 30 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e saiBol1.JH378218 3110827 0 - 7082604 C e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e cebCap1.NW_016107454v1 595361 1275 + 5243153 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I e calJac3.chr14 3460964 0 - 108792865 C a score=106223.000000 s hg38.chr2_KI270769v1_alt 58333 10 + 120616 GGGGCCGACT s panTro5.chr2A 3520299 10 + 111504155 GGGGCCGACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381079 10 + 114371477 GGGGCCGACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258819 10 + 637652 GGGGCCGACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055170 10 + 81552678 GGGGCCGACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3317860 10 + 108979918 GGGGCCGACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5028998 10 - 111193037 GGGGCCGACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3421955 10 + 3644372 GGGGCCAACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3377410 10 - 10304083 GGGGCCGACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466276 10 - 107702431 GGGGCCGACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010209 10 + 1565135 GGGGCCGACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3374607 10 - 13651311 GGGGCCGACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3460964 9 - 108792865 -GGGCAGACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3110827 10 - 7082604 GGGGCCGACT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 596636 10 + 5243153 GGGGCCGACT i cebCap1.NW_016107454v1 I 1275 C 0 s otoGar3.GL873658 2540878 10 + 5252280 GGGCCCGGCT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 573569 10 + 2232271 AAGCCCAGCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e mm10.chr12 91417213 143 - 120129022 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I a score=15461.000000 s hg38.chr2_KI270769v1_alt 58343 3 + 120616 TCC s panTro5.chr2A 3520309 3 + 111504155 TCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381089 3 + 114371477 TCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258829 3 + 637652 TGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055180 3 + 81552678 TCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3317870 3 + 108979918 TCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029008 3 - 111193037 TCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3421965 3 + 3644372 TCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3377420 3 - 10304083 TCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466286 3 - 107702431 TCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010219 3 + 1565135 TCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3374617 3 - 13651311 TCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3460973 3 - 108792865 GCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3110837 3 - 7082604 GTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 596646 3 + 5243153 GTT i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2540888 3 + 5252280 TTC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91417356 3 - 120129022 TCT i mm10.chr12 I 143 C 0 s dasNov3.JH580157 573579 3 + 2232271 TTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I e aotNan1.NW_018507213v1 1930008 1251 - 1938448 I a score=68342.000000 s hg38.chr2_KI270769v1_alt 58346 8 + 120616 CCTG--TGTT s panTro5.chr2A 3520312 8 + 111504155 CCTG--TGTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381092 8 + 114371477 CCTG--TGTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258832 8 + 637652 CCTT--TGTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055183 8 + 81552678 CCTG--TGTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3317873 8 + 108979918 CCTG--TGTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029011 8 - 111193037 CCTG--TGTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3421968 8 + 3644372 CCTG--TGTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3377423 8 - 10304083 CCTG--TGTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466289 8 - 107702431 CCTG--TGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010222 8 + 1565135 CCTG--TGTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3374620 8 - 13651311 CCTG--TGTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3460976 8 - 108792865 CCCG--TGTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3110840 8 - 7082604 CCTG--TGTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 596649 8 + 5243153 CCTG--CGTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1931259 8 - 1938448 CCTA--TGTC i aotNan1.NW_018507213v1 I 1251 C 0 s otoGar3.GL873658 2540891 9 + 5252280 -CTGACCGTG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91417359 8 - 120129022 GCTG--TCTG i mm10.chr12 C 0 C 0 s dasNov3.JH580157 573582 6 + 2232271 ACTA--TG-- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e canFam3.chr17 2044696 1026 + 64289059 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I a score=676359.000000 s hg38.chr2_KI270769v1_alt 58354 67 + 120616 GAAGATTCATCAAAGACTGATTCGAGTCTG--TGTTC--AGCATGTGTGTTTTAGATTAGAACAGTGTTGA s panTro5.chr2A 3520320 67 + 111504155 GAAGATTCATCAAAGACTGATTCGAGTCTG--TGTTC--AGCATGTGTGTTTTAGATTAGAACAGTGTTGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381100 67 + 114371477 GAAGATTCATCAAAGACTGATTCGAGTCTG--TGTTC--AGCATGTGTGTTTTAGATTAGAACAGTGTTGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258840 67 + 637652 GAAGATTCATCAAAGACTGATTCGAGTCTG--TGTTC--AGCATGTGTGTTTTAGATTAGAACAGTGTTGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055191 67 + 81552678 GAAGATTCACCAAAGACTGATTCGAGTCTG--TGTTC--AGCATGTGTGTTTTAGATTAGAACAGTGTTGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3317881 67 + 108979918 GAAGATTCACCAAAGACTGATTCGAGTCTG--TGTTC--AGCATGAGTGTTTCAGATTAGAACAGTGCTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029019 67 - 111193037 GAAGATTCACCAAAGACTGATTCGAGTCTG--TGTTC--AGCATGAGTGTTTCAGATTAGAACAGTGCTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3421976 67 + 3644372 GAAGATTCACCAAAGACTGATTCGAGTCTG--TGTTC--AGCATGAGTGTTTCAGATTAGAACAGTGCTGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3377431 67 - 10304083 GAAGATTTACCAAAGACTGATTCGAGTCTG--TGTTC--AGCATGTGTGTTTCAGATTAGAACAGTGTTGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466297 67 - 107702431 GAAGATTCACCAAAGACTGATTCGAGTCTG--TGTTC--AGCATGTGTGTTTCAGATTAGAACAGTGTTGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010230 67 + 1565135 GAAGATTCACCAAAGACTGATTCGAGTCTG--TGTTC--AGCATGTGTGTTTCAGATGAGAACAGTGTTGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3374628 67 - 13651311 GAAGATTCACCAAAGACTGATTCGAGTCTG--TGTTG--AGCATGTGTGTTTCAGATTAGAACAGTGTTGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3460984 64 - 108792865 GAACATACCCCAAAGACTGATTGGAGTC----TGTTC--AGCACATGTGTTTTAGATTAGAACCATG-TGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3110848 65 - 7082604 GAACATTCACCAAAGACTGATTCGAGTC----TGTTC--AGCACGTGTGTTTTAGATTAGAACCATGTTGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 596657 65 + 5243153 GAACATTCGCCAAAGACTGACTCGAGTC----TGTTC--ACCACGTGTGTTTTAGATTAGAACCATGTTGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1931267 65 - 1938448 GAACATTCATCCAAGACTGATTCGAGTC----TGTTC--AGCACGTGTGTTTTAGATTAGAACCATGTTGT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2540900 58 + 5252280 GAAGATTCACCAG----TGATTAGAGCCTG--CGTGCGTGGCACGTGAATATCAGATTGGCAGA------- i otoGar3.GL873658 C 0 I 1 s mm10.chr12 91417367 66 - 120129022 GAAGACTCA-CAAGGACTGGACAGTGTGTGCATATTC--CACGTGCCTGGCTTAGATCAGGGCGATGCT-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2045722 67 + 64289059 GAACATTCCCCAGATGATGGTTATAGACTG--TATCC--GACCAGTAAGCCTGAGCTTGGGTCGTGGCCGT i canFam3.chr17 I 1026 C 0 s dasNov3.JH580157 573588 56 + 2232271 GAAGCGCCACCAAAGAATGATTAG--------TATTC--AACAAGTGACTCTTAGAGCA--ACGGTGT--- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2649274 2378 - 159902609 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I a score=392271.000000 s hg38.chr2_KI270769v1_alt 58421 37 + 120616 GAATTTTTATATGGGGCCCAGTTTTAGCAGGACATCA s panTro5.chr2A 3520387 37 + 111504155 GAATTTTTATATGGGGCCCAGTTTTAGCAGGACATCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381167 37 + 114371477 GAATTTTTATATGGGGCCCAGTTTTAGCAGGACATCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258907 37 + 637652 GAATTTTTATATGGGGCCCAGTTTTAGCAGGACATCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055258 37 + 81552678 GAATTTTTATATGGGGCCGAGTTTTAGCAGGACATCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3317948 37 + 108979918 GAATTTTTATATGGTGCCCAGTTTTAGTAGGACATCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029086 37 - 111193037 GAATTTTTATATGGTGCCCAGTTTTAGTAGGACATCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3422043 37 + 3644372 GAATTTTTATATGGTGCCCAGTTTTAGTAGGACATCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3377498 37 - 10304083 GAATTTCTATATGGTGCCCAGTTTTAGTAGGACATCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466364 37 - 107702431 GAATTTTTATATGATGCCCAGTTTTAGTAGGACATCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010297 37 + 1565135 GAATTTCTATGTGGTGCCCAGTTTTAGTAGGACATCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3374695 37 - 13651311 GAATTTTTATATGGTGCCCAGTTTTAGTAGGACATCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3461048 30 - 108792865 GAGTTTTCATATGGGGCCCCATTTT---AGGAG---- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3110913 34 - 7082604 GAGTTTTCATATGGGGCCCAGTTTT---AGGATTTCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 596722 34 + 5243153 GAGTTTTCATATGGGGCCCAGTTTT---AGGACTTCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1931332 34 - 1938448 GAGTTTTCATATGGGGCCCAGTTGT---AGGACTTCA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2651652 37 - 159902609 GAATTTTCACACGGGGCCCCGTTTTAGCAGGACATCA i micMur3.chr8 I 2378 I 33 s otoGar3.GL873658 2540959 37 + 5252280 AATCCTTCCTCTGGGGCCCAGTTTTAGCAGGATATCA i otoGar3.GL873658 I 1 C 0 s mm10.chr12 91417433 32 - 120129022 -----CTTATGCAGCATCCTCTTATATGGAGACATCA i mm10.chr12 C 0 C 0 s canFam3.chr17 2045789 25 + 64289059 GAATTTTAGCACAG-GCCCAGCTTCC----------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 573644 36 + 2232271 GAATTTTTCTACAGCTCCCCATT-TAGCAGGGCGTGA i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 961468 1626 + 1238772 I a score=297006.000000 s hg38.chr2_KI270769v1_alt 58458 34 + 120616 TTTAGGATCTTTACAA-ACGAGTTCAG-GGTACTTC s panTro5.chr2A 3520424 34 + 111504155 TTTAGGATCTTTACAA-ACGAGTTCAG-GGTACTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381204 34 + 114371477 TTTAGGATCTTTACAA-ACGAGTTCAG-GGTACTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258944 34 + 637652 TTTAGGATCTTTACAA-ACGAGTTCAG-GGTACTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055295 34 + 81552678 TTTAGAATCTTTACAA-ACGAGTTCAG-GGTACTTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3317985 34 + 108979918 CTTAGGATCTTTATAA-ATGAGTTCAG-GGTACTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029123 34 - 111193037 CTTAGGATCTTTATAA-ATGAGTTCAG-GGTACTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3422080 34 + 3644372 CTTAGGATCTTTATAA-ATGAGTTCAG-GGTACTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3377535 34 - 10304083 CTTAGGATCTTTATAA-ATGAGTTCAG-GGTACTTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466401 34 - 107702431 CTTAGGATCTTTATAA-ATGAGTTCAG-GGTACTTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010334 34 + 1565135 CTTAGAATCTTTATAA-ATGAGTTCAG-GGTACTTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3374732 34 - 13651311 CTTAGGATCTTTATAA-ATGAGTTCAG-GGTACTTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3461078 33 - 108792865 -TTATGATCTTCACAA-ACTACTTCAG-GGTACTTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3110947 34 - 7082604 CTTATGATCTTTACAA-ACTACTTCTG-AGTACTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 596756 34 + 5243153 CTTATGATCTTTACAA-ACTACTTCAG-GGCACTTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1931366 34 - 1938448 CTTATGATCTTTACAA-ACTACTTCAG-GGTACTTC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2540996 6 + 5252280 ----------------------TACAG-G------- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91417465 29 - 120129022 CTTAC--TTTTCTTAA-AGGAGTACAGTGATG---- i mm10.chr12 C 0 C 0 s canFam3.chr17 2045814 33 + 64289059 CTTCTGATCTTTATGACGTGATCCCAG-GGAACA-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 573680 33 + 2232271 TTCAAGACTTTTACAA-AGTAGTCCAG-AGCATTG- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2651689 33 - 159902609 I e proCoq1.NW_012151163v1 961468 1626 + 1238772 I a score=618739.000000 s hg38.chr2_KI270769v1_alt 58492 45 + 120616 GTTTTATCTGTTGTCTTTGAG---------------------CCACTGAGTG-AATTAGTAAATGTT s panTro5.chr2A 3520458 45 + 111504155 GTTTTATCTGTTGTCTTTGAG---------------------CCACTGAGTG-AATTAGTAAATGTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381238 45 + 114371477 GTTTTATCTGTTGTCTTTGAG---------------------CCACTGAGTG-AATTAGTAAATGTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 258978 46 + 637652 GTTTTATCTGTTGTCTTTGAG---------------------CCACTGAGTGAAATTAGTAAATGTT i gorGor5.CYUI01015435v1 C 0 I 3 s nomLeu3.chr19 3055329 45 + 81552678 GTTTTATCTGTTGTCTTTGAG---------------------CCACTGAGTG-AATTAGTAAATGTT i nomLeu3.chr19 C 0 I 3 s rheMac8.chr13 3318019 45 + 108979918 GTTTTATCTGTTGTCTTTGAG---------------------CCACTGAGTG-AATTAGTAAATGTT i rheMac8.chr13 C 0 I 3 s macFas5.chr13 5029157 45 - 111193037 GTTTTATCTGTTGTCTTTGAG---------------------CCACTGAGTG-AATTAGTAAATGTT i macFas5.chr13 C 0 I 3 s macNem1.NW_012011978v1 3422114 45 + 3644372 GTTTTATCTGTTGTCTTTGAG---------------------CCACTGAGTG-AATTAGTAAATGTT i macNem1.NW_012011978v1 C 0 I 3 s cerAty1.NW_012000820v1 3377569 45 - 10304083 GTTTTATCTGTTGTCTTTGAG---------------------CCACTGAGTG-AATTAGTAAATGTT i cerAty1.NW_012000820v1 C 0 I 3 s chlSab2.chr14 3466435 45 - 107702431 GTTTTATCTGTTGTCTTTGAG---------------------CCACTGAGTG-AATTAGTAAATGTT i chlSab2.chr14 C 0 I 3 s manLeu1.NW_012104432v1 1010368 45 + 1565135 GTTTTATCTGTTGTCTTTGAG---------------------CCACTGAGTG-AATTAGTAAATGTT i manLeu1.NW_012104432v1 C 0 I 3 s colAng1.NW_012118821v1 3374766 45 - 13651311 GTTTTATCTGTTGTCTTTGAG---------------------CCACTGAGTG-AATTAGTAAATGTT i colAng1.NW_012118821v1 C 0 I 3 s calJac3.chr14 3461111 44 - 108792865 ATTTTATCTGTAGTCTTTGAG---------------------CCACTGAGTG-AATCAGT-AATGTT i calJac3.chr14 C 0 I 3 s saiBol1.JH378218 3110981 45 - 7082604 ATTGTATCTGTTGTCTTTGAG---------------------CCACTGAGTG-AATCGGTAAATGTT i saiBol1.JH378218 C 0 I 3 s cebCap1.NW_016107454v1 596790 45 + 5243153 GTTTTATCTGTCGTCTTTGAG---------------------CCACTGAGTG-AATCAGTAAATGTT i cebCap1.NW_016107454v1 C 0 I 3 s aotNan1.NW_018507213v1 1931400 45 - 1938448 ATTTTATCCATTGTCTTTGAG---------------------CCACTGAGTG-AATCAGTAAATGTT i aotNan1.NW_018507213v1 C 0 I 3 s micMur3.chr8 2651722 45 - 159902609 GTTTTATCTATTGTCTTTGAG---------------------CCATTTAGTG-AATCAGTAAATGTT i micMur3.chr8 I 33 I 3 s otoGar3.GL873658 2541002 44 + 5252280 -TTTAATCTATTGTCTGTGAG---------------------CTATTTATTG-AATTAGTGTTTGGT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91417494 43 - 120129022 GTTTTGTTTATTGCCTTTGAG---------------------TCATTTGGTG-ACTTCTC--GTGTC i mm10.chr12 C 0 I 3 s canFam3.chr17 2045847 63 + 64289059 GTTTTCCCAGCTGTCTCTGAAGTCGAGGCTGGCAAG---AGCCTGTGTGGTA-AAGTAGGAACTGTT i canFam3.chr17 C 0 I 2 s dasNov3.JH580157 573713 65 + 2232271 ATTTTAT-TATTGTCTTTGAATTACTGGTTGATAAGTAAGACCCATTTAGTG-AATTAGTAAATGTT i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 961468 1626 + 1238772 I a score=752143.000000 s hg38.chr2_KI270769v1_alt 58537 56 + 120616 --TGCAAATGTGATTGCATCAGTGAAGAAGAACATATACCACGAGTTAAAATAAATTT s panTro5.chr2A 3520503 56 + 111504155 --TGCAAATGTGATTGCATCAGTGAAGAAGAACATATACCACGAGTTAAAATAAATTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381283 56 + 114371477 --TGCAAATGTGATTGCATCAGTGAAGAAGAACATATACCACGAGTTAAAATAAATTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259027 56 + 637652 --TGCAAGTGTGATTGCATCAGTGAAGAAGAACATATACCACGAGTTAAAATAAATTT i gorGor5.CYUI01015435v1 I 3 C 0 s nomLeu3.chr19 3055377 53 + 81552678 --TGCAATTGTGATTGCATCAGT---GAAGAACACGTACCACGATTTAAAATAAATTT i nomLeu3.chr19 I 3 C 0 s rheMac8.chr13 3318067 56 + 108979918 --TGCAAATGTGATTGCATCAGTGAAGAAGAAAATATACCACGATTTAAAATAATTTT i rheMac8.chr13 I 3 C 0 s macFas5.chr13 5029205 56 - 111193037 --TGCAAATATGATTGCATCAGTGAAGAAGAAAATATACCACGATTTAAAATAATTTT i macFas5.chr13 I 3 C 0 s macNem1.NW_012011978v1 3422162 56 + 3644372 --TGCAAATGTGATTGCATCAGTGAAGAAGAAAATATACCATGATTTAAAATAATTTT i macNem1.NW_012011978v1 I 3 C 0 s cerAty1.NW_012000820v1 3377617 56 - 10304083 --TGCAAATGTGATTGCATCAGTGAAGAAGAAAATATACCACGATTTAAAATAATTTT i cerAty1.NW_012000820v1 I 3 C 0 s chlSab2.chr14 3466483 56 - 107702431 --TGCAAATGTGATTGCATCAGTGAAGAAGAAAATATACCACGATGTAAAATAATTTT i chlSab2.chr14 I 3 C 0 s manLeu1.NW_012104432v1 1010416 56 + 1565135 --TGCAAATGTGATTGCATCAGTGAAGAAGAAAATATACCACGATTTAAAATAATTTT i manLeu1.NW_012104432v1 I 3 C 0 s colAng1.NW_012118821v1 3374814 56 - 13651311 --TGCAAATGTGATTGCATCAGTGAAGAAGAAAATATACCACGATTTAAAATAATTTT i colAng1.NW_012118821v1 I 3 C 0 s calJac3.chr14 3461158 56 - 108792865 --TGCAAGTGTGATTTCATCAGTGAAGAAGAAAATACACCACGATTTAAAAGAAATTT i calJac3.chr14 I 3 C 0 s saiBol1.JH378218 3111029 56 - 7082604 --TGCAAGTGTGATTTCATCAGTGAAGAAGAAAATACACCACAATTTAAAAGAAATTT i saiBol1.JH378218 I 3 C 0 s cebCap1.NW_016107454v1 596838 56 + 5243153 --TTCAAGTGTGATTTCATCAGTGAAGAAGAAAATACACCACGATTTAAAAGAAATTT i cebCap1.NW_016107454v1 I 3 C 0 s aotNan1.NW_018507213v1 1931448 56 - 1938448 --TGCAAGTGTGATTTCATCAGTGAAGAAGAAAATACACCACGATTCAAAAGAAATTT i aotNan1.NW_018507213v1 I 3 C 0 s micMur3.chr8 2651770 56 - 159902609 --TGCAAATATAATTACATCAGTGAAGAATAAAATATGCCATGACTTAAAATAGATTT i micMur3.chr8 I 3 I 448 s proCoq1.NW_012151163v1 963094 56 + 1238772 --TGCAAATATAATTACATCAGTGAAGAACAAAATACACTATGACTTAAAATAAATTT i proCoq1.NW_012151163v1 I 1626 C 0 s otoGar3.GL873658 2541046 55 + 5252280 ---GCAAATATAATTACCTCAATGAAGAATAAAGTAAACCATGATTTAAAATAAGTTT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91417540 42 - 120129022 --TTTAAATG-----GAATCAGTGTACCACAC----TGTCATGACACAGAAGC----- i mm10.chr12 I 3 C 0 s canFam3.chr17 2045912 54 + 64289059 --GTTCAGTTTAACTG--TCAATGAGGAGTGACATGTGCCTCGATTTAAAACAAATTG i canFam3.chr17 I 2 C 0 s dasNov3.JH580157 573778 58 + 2232271 TGGCCCGATGAGATTACATCAACGAATAATAAAATATATCATTATTTAAGGTAAGTTT i dasNov3.JH580157 C 0 C 0 a score=132944.000000 s hg38.chr2_KI270769v1_alt 58593 10 + 120616 CCCGTGCTGC s panTro5.chr2A 3520559 10 + 111504155 CCCGTGCTGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381339 10 + 114371477 CCCGTGCTGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259083 10 + 637652 CCCGTGCTGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055430 10 + 81552678 CCCATGCTGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3318123 10 + 108979918 CCTATGCTAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029261 10 - 111193037 CCTATGCTAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3422218 10 + 3644372 CCTATGCTAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3377673 10 - 10304083 CCTATGCTAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466539 10 - 107702431 CCTATGCTGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010472 10 + 1565135 CCTATGCTAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3374870 10 - 13651311 CCCATGCTAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3461214 10 - 108792865 CCCATGCTGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3111085 10 - 7082604 CCCGTACTAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 596894 10 + 5243153 CCCATGCTGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1931504 10 - 1938448 CCCATGCTGC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 963150 10 + 1238772 CCCATGCTGC i proCoq1.NW_012151163v1 C 0 I 106 s otoGar3.GL873658 2541101 10 + 5252280 TCCATACAAC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91417582 10 - 120129022 CCTTGGCTGT i mm10.chr12 C 0 I 7 s canFam3.chr17 2045966 10 + 64289059 GCCGTGCTAC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 573836 10 + 2232271 TCCATGCTGG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2651826 448 - 159902609 I a score=654670.000000 s hg38.chr2_KI270769v1_alt 58603 73 + 120616 T--------GAAA-------------------AATCAG--------------------------TGCC-GCCATCC--------------------T-CTGA-CCCTGCTCCTCCCACGCGCCCTGCAGGCTGTC--TCCCTCTGGGG------TCG s panTro5.chr2A 3520569 73 + 111504155 T--------GAAA-------------------AATCAG--------------------------TGCC-GCCATCC--------------------T-CTGA-CCCTGCTCCTCCCACGCGCCCTGCAGGCTGTC--TCCCTCTGGGG------TCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381349 73 + 114371477 T--------GAAA-------------------AATCAG--------------------------TGCC-GCCATCC--------------------T-CTGA-CCCTGCTCCTCCCACGCGCCCTGCAGGCTGTC--TCCCTCTGGGG------TCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259093 73 + 637652 T--------GAAA-------------------AATCAG--------------------------TGCC-GCCATCC--------------------T-CTGA-CCCTGCTCCTCCCACGCGCCCTGCAGGCTGTC--TCCCTCTGGGG------TCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055440 73 + 81552678 T--------GAAA-------------------AATCAG--------------------------TGCC-GCCATCC--------------------T-CTGA-CCCTGCTCCTCCCACGCGCCCTGCAGGCTGTC--TCCCTCTGGGG------TTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3318133 87 + 108979918 CGTGGCTTGGAAA-------------------AATCAA--------------------------TGCC-GCCGTCC--------------------T-CTGA-CCGTGCTCCTCCCACGCGCCCTGCAGGCTGTC--TCCCTCTTGGTCTCCACTCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029271 87 - 111193037 CGTGGCTTGGAAA-------------------AATCAA--------------------------TGCC-GCCGTCC--------------------T-CTGA-CCGTGCTCCTCCCACGCGCCCTGCAGGCTGTC--TCCCTCTTGGTCTCCACTCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3422228 87 + 3644372 CGTGGCTTGGAAA-------------------AATCAA--------------------------TGCC-GCCGTCC--------------------T-CTGA-CCGTGCTCCTCCCACGCGCCCTGCAGGCTGTC--TCCCTCTTGGTCTCCACTCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3377683 87 - 10304083 CATGGCTTGGAAA-------------------AATCAA--------------------------TGCC-GCCATCC--------------------T-CTGA-CCCTGCTCCTCCCATGCGCCCTGCAGGCTGTC--TCCCTCTTGGTCTCCACTCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466549 87 - 107702431 CGTGGCTTGGAAA-------------------AATCAA--------------------------TGCC-GCCATCC--------------------T-CTGA-CCGTGCTCCTCCCACGCGCCCTGCAGGCTGTC--TTCCTCTTGGTCTCGACTCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010482 87 + 1565135 CGTGGCTTGGAAA-------------------AATCAA--------------------------TGCC-GCCATCC--------------------T-CTGA-CCCTGCTCCTCCCACGCGCCCTGCAGGCTGTC--TCCCTCTTGGTCTCCACTCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3374880 87 - 13651311 CGTGGCTTGGAAA-------------------GATCAA--------------------------TGCC-GCTGTCC--------------------T-CTGA-CCCTGCTCCTCCCATGCGCCCTGCAGGCCGTC--TCCCTCTTGGTCTCGACTCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3461224 82 - 108792865 CGTGGCTTGTTAA-------------------AATCAG--------------------------TGCC-TCCATCC--------------------T-CTGA-CCCTGCTCCTCCCACGTCCCCTGTAGGCTGTC--TCCCTCTTGGT-----CCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3111095 82 - 7082604 CGTGGCTTGGTAA-------------------AATCAG--------------------------TGCC-TCCATCC--------------------T-CTGA-CCCTGCTCCTCCCACGTCCCCAGTAGGCTGTC--TCCCTCTTGGT-----CCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 596904 82 + 5243153 CCTGGCTTGGTAA-------------------AATCAG--------------------------TGCC-TCCGTCC--------------------T-CTGA-CCCTGCTCCTCCCACATCCCCTGTAGGCTGTC--TCCCTCTTGGT-----CCTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1931514 82 - 1938448 CGTGGCTTGGTAA-------------------AATCAG--------------------------TGCC-TCCTTCC--------------------T-CTGA-CCCTGCTCCTCCCATGTCCCCTGTAGGCTGTC--TCCCTCTTGGT-----CCTG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2541111 106 + 5252280 CATGGCTTGGAAA-------------------GACGAA----------------------CAGCCACT-GCTGTCCAGAGTGGCAGGTGCCTCGATT-CCTG-CCCCGCTCCTCTTCC-TACTCTGCAGA-TGTC--TCCTCCTCAAGGTCCCC--- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91417599 72 - 120129022 --------------------------------TGCAGA--------------------------TGCCTGTCTTCT--------------------G-CTTT-CTATGCCTCCCTTTCTGGCTCTGCAGACTGTCTGTTCCTCCAGGT-----CTCA i mm10.chr12 I 7 C 0 s canFam3.chr17 2045976 102 + 64289059 CAGGCCTTGGAAACGGTGACCATGGTCCGAGCAGCAGG--------------------------TGCC-TCCGTCC--------------------TGCGGG-CCCTGCTTCTCTGGC-TTCTCTGCAGCCTGCC--TCTGCCACCAGCCCCA---- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 573846 85 + 2232271 TATGATTTAGAAA-------------------AATTAATATCCTCCGCTGTATAAAGCAGCAGATACC-TCAACCC--------------------T-CTGATTTCTGCTCCTC-------------------TT--CCCTGCTTGG---------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2651826 448 - 159902609 I e proCoq1.NW_012151163v1 963160 106 + 1238772 I a score=758085.000000 s hg38.chr2_KI270769v1_alt 58676 64 + 120616 AGAGAGCTTCACAGACCATTTGGGAAAGAGCC----AAGCAAACACACTTCTGC-AAGCCATTTGCATA s panTro5.chr2A 3520642 64 + 111504155 AGAGAGCTTCACAGACCATTTGGGAAAGAGCC----AAGCAAACACACTTCTGC-AAGCCATTTGCATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381422 64 + 114371477 AGAGAGCTTCACAGACCATTTGGGAAAGAGCC----AAGCAAACACACTTCTGC-AAGCCATTTGCATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259166 64 + 637652 AGAGAGCTTCACAGACTATTTGGGAAAGAGCC----AAGCAAACACACTTCTGC-AAGCCATTTGCATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055513 63 + 81552678 AGAGAGCTTCACAGACCATTTGGGAA--AGCC----AAGCAAACACACTTCTACAAAGCCATTTGCATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3318220 64 + 108979918 AGAGAGCTTCACAGACCATTTGGGAAAGAGCC----AAGGAAACACATTTCTAC-AAGCCATTTGCATA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029358 64 - 111193037 AGAGAGCTTCACAGACCATTTGGGAAAGAGCC----AAGGAAACACATTTCTAC-AAGCCATTTGCATA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3422315 64 + 3644372 AGAGAGCTTCACAGACCATTTGGGAAAGAGCC----AAGGAAACACATTTCTAC-AAGCCATTTGCATA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3377770 63 - 10304083 AGAGAGCTTCACAGACTATTTGGGAAAGAGCC----AAGGAAACA-ATTTCTAC-AAGCCATTTGCATA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466636 63 - 107702431 AGAGAGCTTCACAGACCATTTGGGAAAGAGCC----AAGGAAACACATTTC-AC-AAGCCATTTGCATA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010569 64 + 1565135 AGAGAGCTTCACAGACTATTTGGGAAAGAGCC----AAGGAAACACATTTCTGC-AAGCCATTTGCATA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3374967 64 - 13651311 AGAGAGCTTCACAGACCATTTGGGAAAGAGCC----AAGGAAACACATTTCTAC-AAGCCATTTGCATA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3461306 64 - 108792865 AGAGAGTGTCACAGACCCTTGGGGAAAGAGCT----GAGCAAACACACTTCTAA-AAGCCATTTGCCTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3111177 64 - 7082604 AGAGAGTGTCACAGACCCTTTGGGAAAGAGCT----GAGCAAACACACTTCTAA-AAGCCATTTGCCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 596986 64 + 5243153 AGAGAGTGTCACAGACTCTTTGGGAAAGAGCT----GAGCAAACACACTTCTAA-AAGCCATTTGCCTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1931596 64 - 1938448 AGAGAGTGTCACAGACCCTTTGGGAAAGAGCT----GAGCAAATGCACTTCTAA-AAGCCATTTGCCTA i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 963266 64 + 1238772 AGAGAACTTTGCAGATCACTTGGGAAAGAGCC----AAGCAGGCACAATTCTAG-AAGCCATCTGCATA i proCoq1.NW_012151163v1 I 106 I 281 s otoGar3.GL873658 2541217 49 + 5252280 AGAAAGCTCTGCAGACCATCTG-------------------GGCGTGTTTGTAG-AAGCCATTGGTGTG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91417671 68 - 120129022 CCAGAGTTTTGCAAACTGATTGGGGAAGAACCCACACAGCAGAGACATTCCTAA-GAGCCATTTGCATA i mm10.chr12 C 0 C 0 s canFam3.chr17 2046078 61 + 64289059 AGAGGCCTTTAAAGAGGCCT--GGAAAGAGCC----AGGAGAACACCTCCCCA--GCGCCATGTGCATT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 573931 50 + 2232271 ----------ACAG--CCTTGGGGAAGGAGCC----AAGTGAACACGTTTCTA--AAACTAT-TGCATA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2651826 448 - 159902609 I a score=330062.000000 s hg38.chr2_KI270769v1_alt 58740 28 + 120616 AGTAGA-CATAATCCATACGGAATGATGC s panTro5.chr2A 3520706 28 + 111504155 AGTAGA-CATAATCCATACGGAATGATGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381486 28 + 114371477 AGTAGA-CATAATCCATACGGAATGATGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259230 28 + 637652 AGTAGA-CATAATCCATACGGAATGATGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055576 28 + 81552678 AGTAGA-CATAATCCATACGGAATGATGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3318284 28 + 108979918 AGTAGA-CATAATCCATACGGAATGATGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029422 28 - 111193037 AGTAGA-CATAATCCATACGGAATGATGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3422379 28 + 3644372 AGTAGA-CATAATCCATACAGAATGATGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3377833 28 - 10304083 AGTAGA-CATAATCCATACGGAATGATGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466699 28 - 107702431 AGTAGA-CATAATCCATACGGAATGATGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010633 28 + 1565135 AGTAGA-CATAATCCATACAGAATGATGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375031 28 - 13651311 AGTAGA-CATAATCCATACGGAATGATGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3461370 24 - 108792865 AGTAGA-CAT----CATACGTAGTGTTGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3111241 28 - 7082604 AGTAGA-CATAATCCATACGTAATGACGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597050 28 + 5243153 AGTAGA-CATAATCCATATGTAATGATGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1931660 28 - 1938448 AGCAGA-CATAGTCCATACGTAATGATGC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2541266 27 + 5252280 -TTAGA-TGAAATCTGTGCATAATGATGC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91417739 28 - 120129022 AATAGG-TATAATCCATAACCAGTAAGGT i mm10.chr12 C 0 C 0 s canFam3.chr17 2046139 26 + 64289059 AGTAGATCCTGAT--ATAC-TAATGATGC i canFam3.chr17 C 0 I 33 s dasNov3.JH580157 573981 28 + 2232271 AATAGG-TGTAACCCACAAATAATGATGC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2651826 448 - 159902609 I e proCoq1.NW_012151163v1 963330 281 + 1238772 I a score=160757.000000 s hg38.chr2_KI270769v1_alt 58768 19 + 120616 ACTGTTCGGTTG----TAGTTTC s panTro5.chr2A 3520734 19 + 111504155 ACTGTTCGGTTG----TAGTTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381514 19 + 114371477 ACTGTTCGGTTG----TAGTTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259258 19 + 637652 ACTGTTCGGTTG----TAGTTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055604 19 + 81552678 ACTGTTCGGTTG----TAGTTTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3318312 19 + 108979918 ACAGTTCGATTG----TAGTTGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029450 19 - 111193037 ACAGTTCGATTG----TAGTTGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3422407 19 + 3644372 ACAGTTCGATTG----TAGTTGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3377861 19 - 10304083 ACAGTTCGATTG----TAGTTGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466727 19 - 107702431 ACAGTTCAATTG----TAGTTGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010661 19 + 1565135 ACAGTTCGATTG----TAGTTGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375059 19 - 13651311 ACAGTTCGATTG----TAGTTGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3461394 19 - 108792865 CCAGTTCAACTG----TAGCTTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3111269 19 - 7082604 ACAGTTCGATTG----TAGCTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597078 19 + 5243153 ACAGGTTGATTG----TAGCTTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1931688 19 - 1938448 ACAGTTCGACTG----TAGCTTC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2541293 17 + 5252280 CAAGAGC--TTG----CGATTTA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91417767 23 - 120129022 ACAATTAGCTTGAGGTTAATTTC i mm10.chr12 C 0 C 0 s dasNov3.JH580157 574009 19 + 2232271 CAAATTAGCTTG----AGGTTTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2651826 448 - 159902609 I e canFam3.chr17 2046165 33 + 64289059 I e proCoq1.NW_012151163v1 963330 281 + 1238772 I a score=1305005.000000 s hg38.chr2_KI270769v1_alt 58787 127 + 120616 ATTCGTCAGTGACCTGCATCTGCCCG-CCCAGTC-TTGAGTTCAGCTCCATCCCTCCCTGCAG-TTCCGCAGCCT-CCGGCTTCCCCACCTCAGCTTGGCTGAGAGTTTCACGTTCATCCAAGTGCTTCTT s panTro5.chr2A 3520753 118 + 111504155 ATTCGTCAGTGACCTGCATCTGCCCG-CCCAGTC-TTG---------CCATCCCTCCCTGCAG-TTCCGCAGCCT-CCGGCTTCCCCACCTCAGCTTGGCTGAGAGTTTCACGTTCATCCAAGTGCTTCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381533 127 + 114371477 ATTCGTCAGTGACCTGCATCTGCCCG-CCCAGTC-TTGAGTTCAGCTCCATCCCTCCCTGCAG-TTCCGCAGCCT-CCGGCTTCCCCACCTCAGCTTGGCTGAGAGTTTCACGTTCATCCAAGTGCTTCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259277 127 + 637652 ATTCGTCACTGACCTGCATCTGCCCG-CCCAGTC-TTGAATTCAGCTCCATCCCTCCCTGCAG-TTCCGCAGCCT-CCGGCTTCCCCACCTCAGCTTGGCTGAGAGTTCCACGTTCATCCAAGTGCTTCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055623 127 + 81552678 ATTCGTCACTGACCTGCATCTGCCCG-CCCAGTC-TTGAGTTCAGCTCCATCCCTCCCTGCAG-TCCTGCAGCCT-CCGGCTTTCCCAGCTCAGCTTGGCTGAGAGTTCCACGTTCATCCAAGTGCTTCTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3318331 127 + 108979918 ATTCGTCACTGACCTGCATCCACCCG-CACAGTC-TTGAGTTCAGCTCCATCCTTCCCTGCAG-TTCCGCAGCCT-CCAGATTCTCCAGCTCAGCTTGGCTGAGAGTTCCACGTTCATAGAAGTGCTTCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029469 127 - 111193037 ATTCGTCACTGACCTGCATCCACCCG-CACAGTC-TTGAGTTCAGCTCCATCCTTCCCTGCAG-TTCCGCAGCCT-CCAGATTCTCCAGCTCAGCTTGGCTGAGAGTTCCACGTTCATAGAAGTGCTTCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3422426 127 + 3644372 ATTCGTCACTGACCTGCATCCACCCG-CACAGTC-TTGAGTTCAGCTCCATCCTTCCCCGCAG-TTCCGCAGCCT-CCAGATTCTCCAGCTCAGCTTGGCTGAGAGTTCCACGTTCATAGAAGTGCTTCTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3377880 125 - 10304083 ATTCGTCACTGACCTGCATCCGCCCG---CAGTC-TTGAGTTCAGCTCCATCCTTCCCTGCAG-TTCCGCAGCCT-CCAGATTCTCCAGCTCAGCTTGGCTGAGAGTTCCATGTTCATAGAAGTGCTTCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466746 128 - 107702431 ATTCGTCACTGACCTGCATCCGCCCG-CACAGTCTTTGAGTTCAGCTCCATCCTTCCCTGCAG-TTCTGCAGCCT-CCAGATTCTCCAGCTCAGCTTGGCTGAGAGTTCCACGTTCATAGAAGTGCTTCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010680 125 + 1565135 ATTCGTCACTGACCTGCATCCGCCCG---CAGTC-TTGAGTTCAGCTCCATCCTTCCCTGCAG-TTCCGCAGCCT-CCAGATTCTCCAGCTCAGCTTGGCTGAGAGTTCCACGTTCATAGAAGTGCTTCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375078 127 - 13651311 ATTCGTCACTGACCTGCATCCGCCCG-CACAGTC-TTGAGTTCAGCTCCATCCTTCCCTGCAG-TTCCGCAGCCT-CCAGATTCTCCAGCTCAGCTTGGCTGAGAGTTCCACGTTCATAGAAGTGCTTCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3461413 127 - 108792865 ATTCCTCACTCACCTGCATGCACCCG-CCCAGTC-TTGAGTTCGGCTTCAT-CCTCCCTGCAG-TTCTGCAGGCTCCCAGCCTTTCCAGCTCAGCTTGGCTGAGAGTTCCATGTTCGTAGAACTGCTTCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3111288 126 - 7082604 ATTCATCACTCACCTGCATGCACCCG-CCCCGTC-TTGAGTTGGGCTCCATCCCTCCCTGCAG--TCTGCAGCCT-CCAGCCTCCCCAGCTCAGCTTGGCTGAGAGTTCCATGTTCATAGAACTGCTTCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597097 127 + 5243153 ATTCATCACTCACCTGCATGCCCCCA-CCCAGTC-TTGAGTTGGGCTCCATCCCTCCCTGCAG-TTCTGCAGCCT-CCAGCCTCCCCAGCTCAGCTTGGCTGAGAGTTCCATGTTCATAAAACTGCTTCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1931707 127 - 1938448 ATTCATCACCCACCTGCATGCACCTG-GCCAGTC-TTGAGTTCGGCTCCATTCCTCGCTGCAC-TTCTGCAGCCT-CCAGCCTCCCCAGCTCAGCTTGGCTGAGAGTTCCATGTTCATAGAACTGCTGCTT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2541310 107 + 5252280 ATTTGTGGCTG--------------------GTG-TTGAG-TGGGTGACACTGTTCCCTTTAA-TTCTGCAGCCT-CCACCTTCCCCAGGCTAGCCAAGCTGAGGGTCCCATGTTTAAAGAAGTGCCTCTT i otoGar3.GL873658 C 0 I 278 s mm10.chr12 91417790 81 - 120129022 ATTTGCCAGTG------------------CAG---ATGAA-------CCACCCCTAC--------TCCACAATCC-CAGGTAGATTTGGCTTCG---GGGTAAGAG----------GTAGAAAGGTTTCCT i mm10.chr12 C 0 C 0 s canFam3.chr17 2046198 126 + 64289059 GTCCGTCGCTGATACGGACACACCGGGTGTGGTT-TTGAGTCCAGCTCCATCCCTCCC-ACGA-CCCAGCAGCCT-CCGCCCATTCCAGGCTGGCCTGGCGGAGGGTAGCTTGTA-AAAGAAGTGCTACAT i canFam3.chr17 I 33 C 0 s dasNov3.JH580157 574028 129 + 2232271 GTTCATCACTAATATGAACTTGCTCAGAGTAGTC-TTGAGTTCAACTCCATCCCCCCCTGCAATTTTTATATCCT-CTACCCACCCCCGGTTAGTTTAGTTGAAGGTACCATGCTAAAAGAAGTGCTTCTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2651826 448 - 159902609 I e proCoq1.NW_012151163v1 963330 281 + 1238772 I a score=1394668.000000 s hg38.chr2_KI270769v1_alt 58914 124 + 120616 ------TACAGACTCACTCCCAG---CTG---GAGGAGGCAGAGGGTAAGGTACATTTTCGTGCACTCCGGAAAAGAAACGTATTCAACAATGTCCATGTAGCTTTTGCTTCTCTATTGATAATTGCTAATGTGGT s panTro5.chr2A 3520871 124 + 111504155 ------TACAGACTCACTCCCAG---CTG---GAGGAGGCAGAGGGTAAGGTACATTTTCGTGCACTCTGGAAAAGAAACGTATTCAACAATGTCCATGTAGCTTTTGCTTCTCTATTGATAATTGCTAATGTGGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381660 124 + 114371477 ------TACAGACTCACTCCCAG---CTG---GAGGAGGCAGAGGGTAAGGTACATTTTCGTGCACTCTGGAAAAGAAACGTATTCAACAATGTCCATGTAGCTTTTGCTTCTCTATTGATAATTGCTAATGTGGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259404 124 + 637652 ------TACAGACTCACTCCCAG---CTG---GAGGAGGCAGAGGGTAAGGTACATTTTCGTGCACTCTGGAAAAGAAACGTATTCAACAATGTCCATGTAGCTTTTGCTTCTCTGTTGATAATTGCTAATGTGGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055750 120 + 81552678 ------TACAGACTCACTCTCAG---CTG---GAGGAGGCAGAGGATAAGGTACATTTTCGTGCACCCTGGAAAAG----GTATTCAACAATGTCGATGAAGCTTTTGCTTCTCTATTGATAGTTGCTAATGTGGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3318458 124 + 108979918 ------TACAAACTCACTCCCAG---CTG---GAGGAGGCCGAGGATAAGGTACATTTTCGTGCACTCTGGAAAAGAAACGTATTCAACAATGTCGATGTAGCTTTTGCTTCTCTATTGATAGTTGCTAATATGGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029596 124 - 111193037 ------TACAAACTCACTCCCAG---CTG---GAGGAGGCCGAGGATAAGGTACATTTTCGTGCACTCTGGAAAAGAAACGTATTCAACAATGTCGATGTAGCTTTTGCTTCTCTATTGATAGTTGCTAATATGGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3422553 124 + 3644372 ------TACAAACTCACTCCCAG---CTG---GAGGAGGCCGAGGATAAGGTACATTTTCGTGCACTCTGGAAAAGAAACGTATTCAACAATGTCGATGTAGCTTTTGCTTCTCTATTGATAGTTGCTAATATGGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378005 124 - 10304083 ------TACAGACTCACCCCCAG---CTG---GAGGAGGCCGGGGATAAGGTGCATTTTCGTGCACTCTGGAAAAGAAACGTATTCAACAATGTCGATGTAGCTTTTGCTTCTCTATTGATAGTTGCTAATATGGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466874 124 - 107702431 ------TACAGACTCACTCCCAG---CTG---GAGGAGGCAGAGGATACAGTACATTTTCGTGCACTCTGGAAAAGAAACGTATTCAACGATGTCGATGTAGCTTTTGCTTCTCTATTGATAGTTGCTAATATGGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010805 124 + 1565135 ------TACAGACTCACTCCCAG---CTG---GAGGAGGCCGGGGATAAGGTGCATTTTCGTGCACTCTGGAAAAGAAACGTATTCAACAATGTCGATGTAGCTTTTGCTTCTCTATTGATAGTTGCTAATATGGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375205 124 - 13651311 ------TACAGACTCACTCCCAG---CTG---GAGGAGGCAGAGGATAAGGTACATTTTCGTGCACTCTGGAAAAGAAACGTATTCAACAATGTCGATGTAGCTTTTGCTTCTCTATTGATAGTTGCTAATATGGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3461540 125 - 108792865 ------TGCAGACTCACTCCCAACAGCAG---GAGGAGGCAGAGGAAAAGGTACATCTTCGTGCACTCTGGAAAAGAAATGTGTTCAACGCTGTTCGTGTAGC--TTGCTTCTGTCTTGATGGTTGCTAATGTAGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3111414 122 - 7082604 ------TGCAGACTCACTGCCAA---CTG---GAGGAGGCAGAGGATAAGGTACATTTTTGTGCACTCTGGAAAAGAAATGTATTCAACAATGTCAGTGTAGC--TTGCTTCTGTCTTGATAGTTGCTATTGTAGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597224 118 + 5243153 ------TGCAGACTCATTCCCAA---CTG---GAGGAGGCAGAGGATAAGGTACATTTTTGTGCACTCTGGAAAAGAAATGTATTCAACAATGTCATTGTAGC--TTGCT----TCTTGATAGTTGCTAATGCAGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1931834 122 - 1938448 ------TGCAGACTCACTCCCAG---CTG---GAGGAGGCAGAGGATAAGGTACATTTTTGTGCACTCTGGAAAAGAAATGTATTCAACAATGTCAGTGTAGC--TTGCTTCTGTCTTGATAGTTGGTAATGTAGT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2541695 115 + 5252280 ------TAAAGACTCATTCACAA---CTGATCAAAGAGACAGAGGGTAAGATATGTTTT-GTGTGCTCTGAAAAAGAAATACATTCAACAGCGTCAATATAAT--TTGCTTCTCTA---------GCTAAAAAGGT i otoGar3.GL873658 I 278 I 3 s mm10.chr12 91417871 106 - 120129022 ------TAGAGCCT------CTG---CTG----------CAGCAGATGAGGCTCTGTCTCATGCACTCAGAAAAAGAGGCGCGT---GGGCTGGGAGTGTGGC--CCGCTTCTCTGCTGATGGCTGACAAGACAGC i mm10.chr12 C 0 C 0 s canFam3.chr17 2046324 116 + 64289059 ------TAGAGACC--CCCACAG---CTG---AAGGAGCCAGAGGGTAAGA-GCATGT--GTGCACCCTGGAAAAGAAGAACCTTTAGCGGCGTCCATACGGC--TTG-TTCCCTGCTGATGATTGCTGATAAGGC i canFam3.chr17 C 0 I 3 s dasNov3.JH580157 574157 114 + 2232271 CAGTGATGTAG-----CCCACAG---CTG---AACGAGGCAAAGAAAAAGATATATTTGTTTGTACTCTGGAAAAGAAATGTATC--AAAATTTCT---------TTATTTCTCTTCTGATGGTTGCCGATAAGGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2651826 448 - 159902609 I e proCoq1.NW_012151163v1 963330 281 + 1238772 I a score=213140.000000 s hg38.chr2_KI270769v1_alt 59038 17 + 120616 ---AGTGAGAGCTTTGTTTG s panTro5.chr2A 3520995 17 + 111504155 ---AGTGAGAGCTTTGTTTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381784 17 + 114371477 ---AGTGAGAGCTTTGTTTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259528 17 + 637652 ---GGTGAGAGCTTTGTTTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055870 17 + 81552678 ---AGTGAGAGCTTTGTTTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3318582 17 + 108979918 ---AGTGAGAGCTTTGTTTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029720 17 - 111193037 ---AGTGAGAGCTTTGTTTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3422677 17 + 3644372 ---AGTGAGAGCTTTGTTTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378129 17 - 10304083 ---AGTGAGAGCTTTGTTTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3466998 17 - 107702431 ---AGTGAGAGCTTTGTTTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010929 17 + 1565135 ---AGTGAGAGCTTTGTTTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375329 17 - 13651311 ---AGTGAGAGCTTTGTTTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3461665 16 - 108792865 ---TGTGAGAGT-TTGTTCG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3111536 13 - 7082604 ---CGTAAGAGC----TTTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597342 17 + 5243153 ---CGTGAGAGCTTTGTTTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1931956 17 - 1938448 ---CATGAGAGCTTTGTTCG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2652274 17 - 159902609 ---AGTGAGAACTTTCTTTC i micMur3.chr8 I 448 C 0 s otoGar3.GL873658 2541813 17 + 5252280 ---AGTGAGAGCTTGCTTTC i otoGar3.GL873658 I 3 C 0 s mm10.chr12 91417977 15 - 120129022 ----GTGAGAGCTCTGTTC- i mm10.chr12 C 0 C 0 s canFam3.chr17 2046443 17 + 64289059 ---GGTGAAAGCTTTGTTTC i canFam3.chr17 I 3 C 0 s dasNov3.JH580157 574271 20 + 2232271 AAGAACAAGAGCTTTATTTC i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 963330 281 + 1238772 I a score=1019305.000000 s hg38.chr2_KI270769v1_alt 59055 71 + 120616 TAGGAAGAGTTAATATCTTTTCTAAAAGGGTTTTTTGACAGATGGACATTCTTCAGTTTTGCTGTCTTATT s panTro5.chr2A 3521012 71 + 111504155 TAGGAAGAGTTAATATCTTTTCTAAAAGGGTTTTTTGACAGATGGACATTCTTCAGTTTTGCTGTCTTATT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381801 71 + 114371477 TAGGAAGAGTTAATATCTTTTCTAAAAGGGTTTTTTGACAGATGGACATTCTTCAGTTTTGCTGTCTTATT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259545 71 + 637652 TAGGAAGAGTTAATATCTTTTGTAAAAGGGTTTTTTGACAGATGGACATTCTTCAGTTTTGCTGTCTTATT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055887 71 + 81552678 TAGGAAGAGTTAATATCTTTTCTAAAAGGGTTTTTTGACAGATGGACATTCTTCAGTTTTGCTGTCTTATT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3318599 70 + 108979918 TAGGAAGAGTTAATATCTTGTCTAAAAGGGGTTTTTGACAGATGGACA-TCTTCGGTTTTGCTGTCTTATT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029737 70 - 111193037 TAGGAAGAGTTAATATCTTATCTAAAAGGGGTTTTTGACAGATGGACA-TCTTCGGTTTTGCTGTCTTATT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3422694 70 + 3644372 TAGGAAGAGTTAATATCTTGTCTAAAAGGAGTTTTTGACAGATGGACA-TCTTCGGTTTTGCTGTCTTATT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378146 70 - 10304083 TAGGAAGAGTTAATATCTTGTCTAAAAGGGGTTTTTGACAGATGGACA-CCTTCGGTTTTGCTGTCTTATT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467015 70 - 107702431 TAGGAAGAGTTAATATCTTGTCTAAAAGGGGTTTTTGACAGACGGACA-TCTTCGGTTTTGCTGTCTTATT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1010946 70 + 1565135 TAGGAAGAGTTAATATCTTGTCTAAAAGGGGTTTTTGACAGATGGACA-TCTTCGGTTTTGCTGTCTTATT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375346 70 - 13651311 TAGGAAGAGTTAGTATCGTTTCTAAAAGGGGTTTTTGACAGATGGACA-TCTTCGGTTTTGCTGTCTTATT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3461681 69 - 108792865 TAGGAAGAGTTCATGTCTTTTCTAAAAGGGG-TTTTGACAGATGGAGA-TCTTCAGTTTTGTTGTTTTATT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3111549 68 - 7082604 TAGGAAGAGTTAATA-CTTTTCTAAAAGGGG-TTTTGACAGATGGACA-TCTTCAGTTTTGTTGTCTTATT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597359 69 + 5243153 TAGGAAGAGTTAATATCTTTTCTAAAAGGGG-TTTTGACAGACGGACG-TCTTCAGTTTTGTTGTCTTATT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1931973 69 - 1938448 TAGGAAGAGTTAATATCTTTTCTTAAGGGGG-TTTTGACAGATGGACA-TCTTCAGTTTTGTTGTCTTATT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2652291 70 - 159902609 TAGGCAGGGTTTATATCTTTCCTAGAAAGGATTTCTGACAGATGGACA-TCTTCAGTTTTGCTGTTTTATT i micMur3.chr8 C 0 I 390 s proCoq1.NW_012151163v1 963611 70 + 1238772 TAGGAAGGGTTAGTATCTTTCCTAGAAAGGATTTCTGACAGATGGACA-TCTTCAGTTTTGCTATTTTATT i proCoq1.NW_012151163v1 I 281 C 0 s otoGar3.GL873658 2541830 69 + 5252280 TAGGAAGGGTTAATATCTTTTCTAAAAAGGATTTCTGACAGATGGATA-TTTTCAG-TTTGCTATTTTATT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91417992 68 - 120129022 CAGGAAGGGTTGGTGTCTTTGCTAAAAGGGGTTTCTGACAGATGGGCG-CACTTGGGCTTGCCGCTTTC-- i mm10.chr12 C 0 I 1 s canFam3.chr17 2046460 21 + 64289059 TGGGAAGGGTTAATATCCTTT-------------------------------------------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 574291 70 + 2232271 TAGAAAGGGTTAATATCTTTTCTAAAAAAGATTTTTGACAGAAGGACA-TGTTCAGCTATGCTGTTTTATG i dasNov3.JH580157 C 0 C 0 a score=543332.000000 s hg38.chr2_KI270769v1_alt 59126 48 + 120616 TGTTAAGCAAAGTTAGAAACATAAGTGAGAACAGGCGTGGCT-GGCCTC---- s panTro5.chr2A 3521083 48 + 111504155 TGTTAAGCAAAGTTAGAAACATAAGTGAGAACAGGCGTGGCT-GGCCTC---- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381872 48 + 114371477 TGTTAAGCAAAGTTAGAAACATAAGTGACAACAGGCGTGGCT-GGCCTC---- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259616 48 + 637652 TGTTAAGCAAAGTTAGAAACATAAGTGAGAACAGGCGTGGCT-GGCCTC---- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3055958 47 + 81552678 TGTTAAGCAAAGTTAGAAACATAAGCGAGAACAGGCG-GGCT-GGCCTC---- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3318669 47 + 108979918 TG-TAAGCAAAGTTAGAAACATAAGCGAGAGCAGGCGTGGCT-GGCGTC---- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029807 47 - 111193037 TG-TAAGCAAAGTTAGAAACATAAGCGAGAGCAGGCGTGGCT-GGCGTC---- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3422764 47 + 3644372 TG-TAAGCAAAGTTAGAAACATAAGCGAGAGCAGGCGTGGCT-GGCGTC---- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378216 47 - 10304083 TG-TAAGCAAAGTTAGAAACATAAGCGAGAGCAGGCGTGGCT-GGCGTC---- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467085 47 - 107702431 TG-TAAGCAAAGTCAGAAACATAAGCGAGAGCAGGCGTGGCT-GGCATC---- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011016 47 + 1565135 TG-TAAGCAAAGTTAGAAACATAAGCGAGAGCAGGCGTGGCT-GGCGTC---- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375416 47 - 13651311 TG-TAAGCAAAGTTAGAAACATAAACGAGAAGAGGCGTGGCT-GGCGTC---- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3461750 45 - 108792865 CG-TAAGCAAAGTCAGAAAC--AAGCGAGAACAGGCGTGGCG-GGCATT---- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3111617 47 - 7082604 TG-TAAGCAAAGTTAGAAACATAAGCAAGAACAGGCGTGGTG-GTCCTC---- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597428 47 + 5243153 TG-CAAGCAAAGTTAGAAACATAATTGAGAACAGGCGTGGCA-GGCCTC---- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1932042 47 - 1938448 TG-TAAGCAAAGTTAGAAATATAAGCGAGAACAGGTGTGGCG-GGCCTC---- i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 963681 47 + 1238772 TG-TAAACAAAGTTAGAAATGCTAGTGAGAACAGCCATTGCT-GGCCTC---- i proCoq1.NW_012151163v1 C 0 I 326 s otoGar3.GL873658 2541899 47 + 5252280 TG-TAAACAAAGTCAGAAATCTGAGTAGGAACAGCCATCACT-AGCCTC---- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418061 45 - 120129022 AG-TAGACAAAGTTAGAAATACAG--GACAACAGCCACCACC-ATCCTC---- i mm10.chr12 I 1 C 0 s canFam3.chr17 2046481 38 + 64289059 ----------AGTTAAAAATGGAGCCGGGGGCAGCTGTTGTC-AGCCTT---- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 574361 52 + 2232271 TG-TAAACAAAGTCTAAAATGCAAGAAAGGAGAGCCATTGCCAGGCAGCTCCC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652361 390 - 159902609 I a score=2309349.000000 s hg38.chr2_KI270769v1_alt 59174 224 + 120616 ---TAACACTG--------TCAGGGCCAGG-ACT-CAGG--GCCTGGCCACCC--GCACACCGACAG--TGGCCA-GTTATTGCCATCACCGTGCCTGACCCAGAGGGTTTGGTTGCCCTTCTTTTCTGCTGCTTCCACAGAAAACAAATTGATTGTGGCTT-AATCA-GATGAGATGGGAATGACTGGCAGGTGGGGAGAAGAAA-GGAAAGGCCGAGTGAGGATGGC--------CATCCATCGAGGCCACTT s panTro5.chr2A 3521131 224 + 111504155 ---TAACACTG--------TCAGGGCCAGC-ACT-CAGG--GCCTGGCCACCC--GCACACCGACAG--TGGCCA-GTTACTGCCATCACCGTGCCTGACCCAGAGGGTTTGGTTGCCCTTCTTTTCTGCTGCTTCCACAGAAAACAAATTGATTGTGGCTT-AATCA-GATGAGATGGGAATGACTGGCAGGTGGGGAGAAGAAA-GGAAAGGCCGAGTGAGGATGGC--------CATCCATTGAGGCCACTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3381920 224 + 114371477 ---TAACACTG--------TCAGGGCCAGC-ACT-CAGG--GCCTGGCCACCC--GCACACCGACAG--TGGCCA-GTTATTGCCATCACCGTGCCTGACCCAGAGGGTTTGGTTGCCCTTCTTTTCTGCTGCTTCTACAGAAAACAAATTGATTGTGGCTT-AATCA-GATGAGATGGGAATGACTGGCAGGTGGGGAGAAGAAA-GGAAAGGCCGAGTGAGGATGGC--------CATCCATTGAGGCCACTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259664 225 + 637652 ---TAACACTG--------TCAGGGCCAGC-ACT-CAGG--GCCTGGCCACCC--GCACACCGACAG--TGGCCA-GTTACTGCCATCACCGTGCCTGACCCAGAGGGTTTGGTTGCCCTTCTTTTCTGCTGCTTCCACAGAGAACAAATTGATTGTGGCTTAAATCA-GATGAGATGGGAATGACTGGCAGGTGGTGAGAAGAAA-GGAAAGGCCGAGTGAGGATGGC--------CATCCATCGAGGCCACGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056005 219 + 81552678 ---TAA--------------CAGGGCCCGC-ATT-CAGG--GCCTGGCCACCC--ACGCTCCGTCGG--TGGTCA-GTTACTGCCATCACCGTGCCTGACCCAGAGGGTTTGGTTGCCCTTCTTTTCTGCTGCTTCCACAGAGAACAAATTGATTGTGGCTT-AATCACGATGAGATGGGAATGACTGGCAGGTGGGGAGAAGAAA-GGAAAGGCCGAGTGAGGATGGC--------CGTCCATGAAGGCCACGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3318716 223 + 108979918 ---TAACACTG--------TCAGGGCCGGC-GCT-CAGG--GTCTGGCCACCC--GCACGCCGACAG--CGGCCA-GTTGCTGCCATCACCGTGCCTGA-CCAGAGGGCTTGGTTGCCCTGCTTTTCTGCTCCTCCCGCAGAGAACAAATTGATCATGGCTA-AATCA-GATGAGATGGGAATGATTGGCAGGTGGGGAGAAGAAA-GGAAAGGCCGAGTGAGGATGGC--------CGTCCATCGAGGCCACGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5029854 223 - 111193037 ---TAACACTG--------TCAGGGCCGGC-GCT-CAGG--GTCTGGCCACCC--GCACGCCGACAG--CGGCCA-GTTGCTGCCATCACCGTGGCTGA-CCAGAGGGCTTGGTTGCCCTGCTTTTCTGCTCCTCCCGCAGAGAACAAATTGATCATGGCTA-AATCA-GATGAGATGGGAATGATTGGCAGGTGGGGAGAAGAAA-GGAAAGGCCGAGTGAGGATGGC--------CGTCCATCGAGGCCACGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3422811 223 + 3644372 ---TAACACTG--------TCAGGGCCGGC-GCT-CAGG--GTCTGGCCACCC--GCACGCCGACAG--CGGCCA-GTTGCTGCCATCACCGTGCCTGA-CCAGAGGGCTTGGTTGCCCTGCTTTTCTGCTCCTCCCGCAGAGAACAAATTGATCATGGCTA-AATCA-GATGAGATGGGAATGATTGGCAGGTGGGGAGAAGAAA-GGAAAGGCCGAGTGAGGATGGC--------CGTCCATCGAGGCCACGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378263 223 - 10304083 ---TAACACTG--------TCAGGGCCGGC-GCT-CAGG--GTCTGGCCACCC--GCACGCCGACAG--CGGCCA-GTTGCTGCCATCACCGTGCCTGA-CCAGAGGGCTTGGTTGCCCTGCTTTTCTGCTCCTCCCGCAGAGAACAAATTGATTATGTCTA-AATCA-GATGAGATGGAAATGATTGGCAGGTGGGGAGAAGAAA-GGAAAGGCCAAGTGAGGATGGC--------CGTCCATCGAGGCCACGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467132 223 - 107702431 ---TAACACTG--------TCAGGGCCGGC-GCT-CAGG--GTCTGGCCACCC--GCACACCGACAG--CGGCCA-GTTGCTGCCATCACCGTGCCTGA-CCAGAGGGCTTGGTTGCCCTGCTTTTCTGCTGCTCCCGCAGAGAACAAATTGATTATGGCTA-AATCA-GATGAGATGGGAATGATTGGCAGGTGGGGAGAAGAAA-GGAAAGGCCGAGTGAGGATAGC--------CGTCCATCGAGGCCACGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011063 223 + 1565135 ---TAACACTG--------TCAGGGCGGGC-GCT-CAGG--GTCTGGCCACCC--GCACACCGACAG--CAGCTG-GTTGCTGCCATCACCGTGCCTGA-CCAGAGGGCTTGGTTGCCCTGCTTTTCTGCTCCTCCCGCAGAGAACAAATTGATTATGGCTA-AATCA-GATGAGATGGGAATGATTGGCAGGTGGGGAGAAGAAA-GGAAAGGCCGAGTGAGGATGGC--------CGTCCATCGAGGCCACGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375463 223 - 13651311 ---TAACACTG--------TCAGGGCCAGC-TCT-CAGG--GTCTGGCCACCC--GCACACTGACAG--TGGCCA-GTTGCTGCCATCACCGTGCCTGA-CCAGAAGGCTTGGTTGCCCTGCTTTTCTGCTGCTCCCGCAGAGAACAAATTGATTATGGCTA-AATCA-GATGAGATGGGAATGATTGGCAGGTAGGGAGAAGAAA-GGAAAGGCCGAGTGAGGATGGC--------CGTCCATCGAGGCCACGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3461795 211 - 108792865 ---TAATACCA--------TCAGGGCCAGC-GCT-CAGG--GCTC----------GCACACAGACAG--CGGCCC-CTTGCCGCGGTCACCACATCTGACCCAGAGGGTTTGTTCGCCCTACTTTTCTGCTGTTCCCGCAGAGAACAGAGTGATGGTGGCTT-AATCA-GATGACATGGGAATGATTGGCAGCTGGAGAGAA------GAAAGGCCGAGTGAGGACAAA--------TGTCCATTGAGGCAAAGT i calJac3.chr14 C 0 I 37 s saiBol1.JH378218 3111664 219 - 7082604 ---TAATACCG--------TCAGGGCCAGC-GCT-CAGG--GCCCAGCCCCCG--GCACACCGACAG--CGGCCA-GTTGCTGCCATCACCACGTCTGACCCAGAGGGTTTGTTCGCCCTGCTTTTCTGCTGCTCCTGCAGAGAACAGATTGATTGTGGCTT-AATCA-GATGACATGGGAGTGATTGGGAGGTGGAGAGAA------GAAAGGCCGAGTGAGGACGGC--------TGTCCATTGAGACTGAGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597475 205 + 5243153 ---TAATACTG--------TCAGGGCCAGC-GCT-C--------C----------GCGCACCGACAG--TGGCCA-GTTGCTGCCATCACCACGTGTGACCCAGAGGGTTTGTTCGCCCTGCTTTTCTGCTACTCCTGCAGAGAACAGATTGATTGTGGCTT-AATCA-GATGACATGGGAATGATTGGCAGGTGGAGAGAA------GAAAGGCCAAGTGAGGACGGC--------TGTCCGCTGAGGCTGAGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1932089 218 - 1938448 ---TAATACCA--------TCAGGGCCACC-GTT-CAGG--GCCCAGCCCCC---GCACGCCAACAG--CGGCCA-GTTGCTGCCATCAAAACGTCTGACCCAGAGGGTTTGGTCACCCTGCTTTTCTGCTGCTCCTGCAGAGAACAGATTGATTGTGGCTT-AATCA-GATGACATGGGAATGATTGGCAGGTGGAGAAAA------GAAAGGCCAAGTGAGGATGGC--------TATCCATTGAGGCTGAGT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2541946 215 + 5252280 ---TAGTGTGG--------TCAGCGCCAGCTGCT-CAAG-----CAGCCCCCCCAGTGCGCTG-CGG--CGGC------------ATCACCTCGCCTGACCTCGATGCTTCCCTTGTCCTGCTCATCTCCTGTTCCAGCAGAAAACAAAG-----GTGGCAT-AATCA-GAGATGGTGGGAGTGAGTGGCAAGTGGAGAGAATAAA-GGAAAGACTGGATGAAGACAGCTTCTGCTTCTTCAGCCCAGACCCTGT i otoGar3.GL873658 C 0 I 5 s mm10.chr12 91418106 211 - 120129022 -------TCCT--------CGCGGGCCGGC-TCG-GGCA--GGCCAGCCGTCA--GCCCCCTGATGGCTCTGCCC-GCTGCTGCCGCTCCC----CTGATCCAGA---------TGCTCCACTTTCCCACTGCTCCTGCGGAGAACAAATTAGCTGTGACTT-AATCA-GAGACGATGGG-GCATTCGGCAAGCCACTTAAAGAAGCAGAAAGAGAGACTGAGGAGCGC------TTCATCCCTCTGGGCTGCAG i mm10.chr12 C 0 I 7 s canFam3.chr17 2046519 232 + 64289059 ------CACTGGCCAGCTCCCCAGGGAAGC-GCT-CAAGGAGGCTGGTCATCG--GCACGCGGACGA--CGTCTG-GGCGCTGCCAG-GCCTCACCTGACCCACACAGCGCACGTGCCCTGCCT---TGCTGCTCCAGCAGAGAGCAAATTGTCTGTGGCTT-AATCA-GATGAGATGGGAGTGATTGGCAAGTGGAGAGAGGTAA----TTGAGTGATTGGAGACGGCTCCTGCTTCCTGGCTCGAGGCGGCAT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 574413 239 + 2232271 TGGCCAAGCCG--------CCTGGGGAAAC-ACTGCAGGTAGGCTGGCCATCA--GTATGCTGAAAA--TGTCCAGGTCACTGCCAGCGCCTCATCTGACTCAGACAGTTCGGTTGCCCTACTTTTCCGCTGCTCCAGCAGAGAACAAATTGATTGTGGCTT-AATCA-GATAAGATGGGGATGATTGGCAAGTGGAGAGGAGTAATTGAAAGATACAGCGAGGATGGC-TCAGCTTCCTCAGTCGAGGCAGCAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652361 390 - 159902609 I e proCoq1.NW_012151163v1 963728 326 + 1238772 I a score=488560.000000 s hg38.chr2_KI270769v1_alt 59398 48 + 120616 CCCTGCTCTTTGCCATTGAAGCCCATGCTC-CTGGAACCCCGTGTGTGT s panTro5.chr2A 3521355 48 + 111504155 CCCTGCTCTTTGCCATTGAAGCCCATGCTC-CTGGAACCCCGTGTGCGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382144 48 + 114371477 CCCTGCTCTTTGCCATTGAAGCCCATGCTC-CTGGAACCCCGTGTGCGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259889 48 + 637652 CCCTGCTCTTTGCCATTGAAGCCCATGCTC-CTGGAACCCCGTGTGTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056224 49 + 81552678 CCCTGCTCTTTGCCATTGAAGCCCATGCTCTCTGGAACCCCGTGTGTGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3318939 48 + 108979918 CCCTGCTCTTTTCCATTGAAGCCCATGCTC-CTGGAACCCCGTGTGTGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030077 48 - 111193037 CCCTGCTCTTTTCCATTGAAGCCCATGCTC-CTGGAACCCCGTGTGTGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423034 48 + 3644372 CCCTGCTCTTTTCCATTGAAGCCCATGCTC-CTGGAACCCCGTGTGTGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378486 48 - 10304083 CCCTGCTCTTTTCCATTGAAGCCCATGCTC-CTGGAACCCCGTGTGTGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467355 48 - 107702431 CCCTGCTCTTTTCCATTGAAGCCCATGCTC-CTGGAACCCCGTGTGTGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011286 48 + 1565135 CCCTGCTCTTTTCCATTGAAGCCCATGCTC-CTGGAACCCCGTGTGTGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375686 48 - 13651311 CGCTGCTCTTTTCCATGGAAGCCCATGCTC-GTGGAACCCCGTGTGTGC i colAng1.NW_012118821v1 C 0 I 8 s saiBol1.JH378218 3111883 38 - 7082604 CCCTTCTCATTGCCATTGAAGCCCAAGCTC-C----------TGTGTGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597680 38 + 5243153 CCCTGCTCTTTGCCATTGAAGCCCAGGCTC-C----------TGTGTGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1932307 48 - 1938448 CCCTGCTCTTTGCCATTGAAGCCCAAGCTC-CTGGAACCCCGTGTGTGC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2542166 40 + 5252280 GCCGGCCCTTTGCCATGGAAG-CCAAGTTC-C-------CCAACTGTGC i otoGar3.GL873658 I 5 C 0 s mm10.chr12 91418324 37 - 120129022 CCCTGCCCC--------GAGGCTCACACTC-CTG---CCCCGCATCTGT i mm10.chr12 I 7 I 4 s canFam3.chr17 2046751 46 + 64289059 CTCTGCCCTTTGCCATTGACGCTCAGGCTT-CTGGG--CCCGTGCATGC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 574652 48 + 2232271 ATCTGCCCTTTGCCGTTGAGGTTTGTACTC-CCAGGACCCGGTGTGTGC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652361 390 - 159902609 I e proCoq1.NW_012151163v1 963728 326 + 1238772 I e calJac3.chr14 3462006 37 - 108792865 I a score=211914.000000 s hg38.chr2_KI270769v1_alt 59446 17 + 120616 TCAGAATGTGCAAGCAG s panTro5.chr2A 3521403 17 + 111504155 TCAGAATGTGCAAGCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382192 17 + 114371477 TCAGAATGTGCAAGCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259937 17 + 637652 TCAGAATGTGCAAGCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056273 17 + 81552678 TCAGAATGTGCAAGCAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3318987 17 + 108979918 TCAGAATGTGCAAGCAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030125 17 - 111193037 TCAGAATGTGCAAGCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423082 17 + 3644372 TCAGAATGTGCAAGCAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378534 17 - 10304083 TCAGAATGTGCAAGCAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467403 17 - 107702431 TCAGAATGTGCAAGCAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011334 17 + 1565135 TCAGAATGTGCAAGCAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375742 17 - 13651311 TCAGAATGTGCAAGCAG i colAng1.NW_012118821v1 I 8 C 0 s calJac3.chr14 3462043 17 - 108792865 TCAGAAATTGCAAGCAG i calJac3.chr14 I 37 C 0 s saiBol1.JH378218 3111921 16 - 7082604 TCAGATG-TGCAAGCAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597718 16 + 5243153 TCAGATG-TGCAAGCCG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1932355 17 - 1938448 TCAGAATGTGCAAGCAG i aotNan1.NW_018507213v1 C 0 I 1793 s otoGar3.GL873658 2542206 17 + 5252280 CCAGAATGTGGGAGCTG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418365 13 - 120129022 CCAGA----GCAAACTG i mm10.chr12 I 4 I 3 s canFam3.chr17 2046797 17 + 64289059 TCAGAGTGCACAAGCAG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 574700 17 + 2232271 TCAGAATACTCAAGCAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652361 390 - 159902609 I e proCoq1.NW_012151163v1 963728 326 + 1238772 I a score=24408.000000 s hg38.chr2_KI270769v1_alt 59463 3 + 120616 AAG s panTro5.chr2A 3521420 3 + 111504155 CAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382209 3 + 114371477 CAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259954 3 + 637652 CAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056290 3 + 81552678 GAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319004 3 + 108979918 GAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030142 3 - 111193037 GAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423099 3 + 3644372 GAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378551 3 - 10304083 GAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467420 3 - 107702431 GAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011351 3 + 1565135 GAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375759 3 - 13651311 GGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462060 3 - 108792865 GAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3111937 3 - 7082604 GAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597734 3 + 5243153 GAG i cebCap1.NW_016107454v1 C 0 I 17 s canFam3.chr17 2046814 3 + 64289059 GAG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 574717 3 + 2232271 GAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652361 390 - 159902609 I e mm10.chr12 91418378 3 - 120129022 I e proCoq1.NW_012151163v1 963728 326 + 1238772 I e otoGar3.GL873658 2542223 0 + 5252280 C e aotNan1.NW_018507213v1 1932372 1793 - 1938448 I a score=-14723.000000 s hg38.chr2_KI270769v1_alt 59466 17 + 120616 A-------------AGAAGAGGGAGCGGAA-- s panTro5.chr2A 3521423 17 + 111504155 A-------------AGGAGAGGGAGCGGAA-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382212 17 + 114371477 A-------------AGGAGAGGGAGCGGAA-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259957 17 + 637652 A-------------AGGAGAGGGAGCGGAA-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056293 17 + 81552678 A-------------AGCAGAGGGAGCAGAA-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319007 15 + 108979918 A-------------AAC--AGGGAGCAGAG-- i rheMac8.chr13 C 0 I 1 s macFas5.chr13 5030145 15 - 111193037 A-------------AAC--AGGGAGCAGAG-- i macFas5.chr13 C 0 I 1 s macNem1.NW_012011978v1 3423102 28 + 3644372 AATGTGAAAGCAGGAAA--AGGGAGCGGAG-- i macNem1.NW_012011978v1 C 0 I 1 s cerAty1.NW_012000820v1 3378554 15 - 10304083 A-------------AAC--AGGGAGTGGAG-- i cerAty1.NW_012000820v1 C 0 I 1 s chlSab2.chr14 3467423 13 - 107702431 A-------------AAC----GGAGCGGAG-- i chlSab2.chr14 C 0 I 1 s manLeu1.NW_012104432v1 1011354 13 + 1565135 A-------------AAC----GGAGCGGAG-- i manLeu1.NW_012104432v1 C 0 I 1 s colAng1.NW_012118821v1 3375762 17 - 13651311 A-------------AACAGAGGGAGCAGAG-- i colAng1.NW_012118821v1 C 0 I 1 s calJac3.chr14 3462063 16 - 108792865 --------------AATGGACGGAAGTGAG-- i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3111940 16 - 7082604 --------------CGTGGTGGGAGCGGGG-- i saiBol1.JH378218 C 0 I 1 s otoGar3.GL873658 2542223 11 + 5252280 -------------------GAGGTGCCAAA-- i otoGar3.GL873658 C 0 I 1 s mm10.chr12 91418381 17 - 120129022 ------------TCAACAAAGGAGCTAGA--- i mm10.chr12 I 3 C 0 s canFam3.chr17 2046817 4 + 64289059 ------------------------ACGA---- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 574720 14 + 2232271 ------------------AAGCACACAGGAAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652361 390 - 159902609 I e proCoq1.NW_012151163v1 963728 326 + 1238772 I e cebCap1.NW_016107454v1 597737 17 + 5243153 I e aotNan1.NW_018507213v1 1932372 1793 - 1938448 I a score=133351.000000 s hg38.chr2_KI270769v1_alt 59483 14 + 120616 AGCACTGGGCATCA s panTro5.chr2A 3521440 14 + 111504155 AGCACTGGGCATCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382229 14 + 114371477 AGCACTGGGCATCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259974 14 + 637652 AGCACTGGGCATCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056310 14 + 81552678 AGCACTGGGCATCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319023 14 + 108979918 AGCGCTGGGCATCA i rheMac8.chr13 I 1 C 0 s macFas5.chr13 5030161 14 - 111193037 AGCGCTGGGCATCA i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3423131 14 + 3644372 AGCGCTGGGCATCA i macNem1.NW_012011978v1 I 1 C 0 s cerAty1.NW_012000820v1 3378570 14 - 10304083 AGCGCTGGGCATCA i cerAty1.NW_012000820v1 I 1 C 0 s chlSab2.chr14 3467437 14 - 107702431 AGCGCTGGGCATCA i chlSab2.chr14 I 1 C 0 s manLeu1.NW_012104432v1 1011368 14 + 1565135 AGCGCTGGGCATCA i manLeu1.NW_012104432v1 I 1 C 0 s colAng1.NW_012118821v1 3375780 14 - 13651311 AGCGCTGGGCATCA i colAng1.NW_012118821v1 I 1 C 0 s calJac3.chr14 3462080 14 - 108792865 AGCATTGGGCATCG i calJac3.chr14 I 1 I 362 s saiBol1.JH378218 3111957 14 - 7082604 AGCACTGGGCATCG i saiBol1.JH378218 I 1 C 0 s cebCap1.NW_016107454v1 597754 14 + 5243153 AGCACTGGGCGTCA i cebCap1.NW_016107454v1 I 17 C 0 s otoGar3.GL873658 2542235 14 + 5252280 AGAATGGGTCATCA i otoGar3.GL873658 I 1 C 0 s mm10.chr12 91418398 10 - 120129022 ---ACT-TCCATCA i mm10.chr12 C 0 I 3 s canFam3.chr17 2046821 12 + 64289059 --CAGTAGGGCCCA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 574734 14 + 2232271 GTCCTTTGTCAACA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652361 390 - 159902609 I e proCoq1.NW_012151163v1 963728 326 + 1238772 I e aotNan1.NW_018507213v1 1932372 1793 - 1938448 I a score=144385.000000 s hg38.chr2_KI270769v1_alt 59497 16 + 120616 -GGGCTTTCCAGGGGAA s panTro5.chr2A 3521454 16 + 111504155 -GGGCTTTCCAGGGGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382243 16 + 114371477 -GGGCTTTCCAGGGGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 259988 16 + 637652 -GGGCTTTCCAGGGGAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056324 16 + 81552678 -GGACTTTGCAGAGGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319037 16 + 108979918 -GGGCTTTCCAGAGGAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030175 16 - 111193037 -GGGCTTTCCAGAGGAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423145 16 + 3644372 -GGGCTTTCCAGAGGAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378584 16 - 10304083 -GGGCTTTCCAGAGGAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467451 16 - 107702431 -GGGCTTTCCAGAGGAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011382 16 + 1565135 -GGGCTTTCCAGAGGAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375794 16 - 13651311 -GGGCGTTCCAGAGGAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462456 16 - 108792865 -GGGTTCCCCAGAGGAA i calJac3.chr14 I 362 C 0 s saiBol1.JH378218 3111971 16 - 7082604 -GGGCTCTCCAGAGGAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597768 16 + 5243153 -GGGATCTCCCGAGGAA i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2542249 16 + 5252280 -GGGTTTGCAAGATTGA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418411 16 - 120129022 -GGGTGTGCAGGGCGGC i mm10.chr12 I 3 C 0 s canFam3.chr17 2046833 16 + 64289059 -GGACTTTCTAGAGAAA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 574748 8 + 2232271 TTGGTTTG--------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652361 390 - 159902609 I e proCoq1.NW_012151163v1 963728 326 + 1238772 I e aotNan1.NW_018507213v1 1932372 1793 - 1938448 I a score=102002.000000 s hg38.chr2_KI270769v1_alt 59513 12 + 120616 TGTCTTGACCTG s panTro5.chr2A 3521470 12 + 111504155 TGTCTTGACCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382259 12 + 114371477 TGTCTTGACCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260004 12 + 637652 TGTCTTGACCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056340 12 + 81552678 TGTCTTGACCCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319053 11 + 108979918 TGTC-TGACCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030191 11 - 111193037 TGTC-TGACCCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423161 11 + 3644372 TGTC-TGACCCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378600 12 - 10304083 TGTCTTGACCCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467467 12 - 107702431 TGTCTTGACCCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011398 12 + 1565135 TGTCTTGACCCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375810 12 - 13651311 TGTCTTGACCCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462472 12 - 108792865 TGTCTTGACTTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3111987 12 - 7082604 TGTCTTGACTCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597784 12 + 5243153 TGTCTTGACTCG i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2542265 12 + 5252280 TATCTTGACCCA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418427 12 - 120129022 TGCCCTGCTGGG i mm10.chr12 C 0 C 0 s dasNov3.JH580157 574756 12 + 2232271 TATCTCGATTCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652361 390 - 159902609 I e canFam3.chr17 2046849 0 + 64289059 C e proCoq1.NW_012151163v1 963728 326 + 1238772 I e aotNan1.NW_018507213v1 1932372 1793 - 1938448 I a score=61078.000000 s hg38.chr2_KI270769v1_alt 59525 7 + 120616 GCTGGCA s panTro5.chr2A 3521482 3 + 111504155 GC----A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382271 3 + 114371477 GC----A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260016 7 + 637652 GCTGGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056352 7 + 81552678 GCTGGCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319064 7 + 108979918 GCTGGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030202 7 - 111193037 GCTGGCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423172 7 + 3644372 GCTGGCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378612 7 - 10304083 GCTGGCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467479 7 - 107702431 GCTGGCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011410 7 + 1565135 GCTGGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375822 7 - 13651311 GCTGGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462484 7 - 108792865 GCTGGCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3111999 7 - 7082604 GCTGGCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597796 7 + 5243153 GCTGGCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934165 7 - 1938448 GCTGGCA i aotNan1.NW_018507213v1 I 1793 C 0 s otoGar3.GL873658 2542277 7 + 5252280 GCTCACA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418439 7 - 120129022 GGTCACA i mm10.chr12 C 0 C 0 s dasNov3.JH580157 574768 7 + 2232271 GCTCCAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652361 390 - 159902609 I e canFam3.chr17 2046849 0 + 64289059 C e proCoq1.NW_012151163v1 963728 326 + 1238772 I a score=486363.000000 s hg38.chr2_KI270769v1_alt 59532 33 + 120616 GTGGAAATTCACACCTTCAGAAACC-TCTAGAGT s panTro5.chr2A 3521485 33 + 111504155 GTGGAAATTCACACCTTCAGAAACC-TCTAGAGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382274 33 + 114371477 GTGGAAATTCACACCTTCAGAAACC-TCTAGAGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260023 33 + 637652 GTGGAAATTCACACCTTCAGAAACC-TCTAGAGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056359 33 + 81552678 GTGGAAATTCATACCTTCAGAAACC-TCTGGAGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319071 33 + 108979918 GTGGAAATTCACACCTTCAGAAACC-TCTAGAGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030209 33 - 111193037 GTGGAAATTCACACCTTCAGAAACC-TCTAGAGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423179 33 + 3644372 GTGGAAATTCACACCTTCAGAAACC-TCTAGAGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378619 33 - 10304083 GTGGAAATTCACACCTTCAGAAACC-TCTAGAGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467486 33 - 107702431 GTGGAAATTCGTACCTTCAGAAACC-TCTAGAGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011417 33 + 1565135 GTGGAAATTCACACCTTCAGAAACC-TCTAGAGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375829 33 - 13651311 GTGGAAATTCACACCTTCAGAAACC-TCTAGAGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462491 32 - 108792865 GTGG-AATTCACACCTTCAGAGACC-TCTAGAGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112006 33 - 7082604 GTGGAAATTCACACCTTCAGAATCC-TCTGGAGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597803 33 + 5243153 GTGGAAGTTCACACCTTCAGAATCC-TCTGGAGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934172 34 - 1938448 GTGGAAATTCACACCTTCAGAAACTAGCTAGAGT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2652751 33 - 159902609 GTGGGAATTCACACCTTCAGAACCC-TCTAGAGT i micMur3.chr8 I 390 I 736 s proCoq1.NW_012151163v1 964054 33 + 1238772 GTGGGAATTCGCACCTTCAGAACCC-TCTAGAGT i proCoq1.NW_012151163v1 I 326 C 0 s otoGar3.GL873658 2542284 32 + 5252280 ATGGAAAATCACACCTTTAG-ACCC-TCCAGAGC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418446 16 - 120129022 ----------------GCAGAAGCC-TCT-GATT i mm10.chr12 C 0 I 1 s dasNov3.JH580157 574775 33 + 2232271 ATGGAAATTCATACCTTTAGAACCC-TCCTGATT i dasNov3.JH580157 C 0 C 0 e canFam3.chr17 2046849 0 + 64289059 C a score=59203.000000 s hg38.chr2_KI270769v1_alt 59565 5 + 120616 TCATC s panTro5.chr2A 3521518 5 + 111504155 TCATC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382307 5 + 114371477 TCATC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260056 5 + 637652 TCATC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056392 5 + 81552678 TCATC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319104 5 + 108979918 TCATC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030242 5 - 111193037 TCATC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423212 5 + 3644372 TCATC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378652 5 - 10304083 TCATC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467519 5 - 107702431 TCATC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011450 5 + 1565135 TCATC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375862 5 - 13651311 TCATC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462523 5 - 108792865 TCATC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112039 5 - 7082604 TCATC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597836 5 + 5243153 TCATC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934206 5 - 1938448 TCATC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 964087 5 + 1238772 GCATC i proCoq1.NW_012151163v1 C 0 I 185 s otoGar3.GL873658 2542316 5 + 5252280 ACGTT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418463 4 - 120129022 GCAC- i mm10.chr12 I 1 C 0 s dasNov3.JH580157 574808 5 + 2232271 GCATC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652784 736 - 159902609 I e canFam3.chr17 2046849 0 + 64289059 C a score=166424.000000 s hg38.chr2_KI270769v1_alt 59570 17 + 120616 GTGGCCA-ATCCTGGGAC s panTro5.chr2A 3521523 17 + 111504155 GTGGCCA-ATCCTGGGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382312 17 + 114371477 GTGGCCA-ATCCTGGGAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260061 17 + 637652 GTGGCCA-ATCCTGGGAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056397 17 + 81552678 GTGGCCA-ATCCCGGGAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319109 17 + 108979918 GTGGCCA-GTTCCGGGAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030247 17 - 111193037 GTGGCCA-GTTCCGGGAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423217 17 + 3644372 GTGGCCA-GTCCCGGGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378657 17 - 10304083 ATGGCCA-GTCCCGAGAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467524 17 - 107702431 GTGGCCA-GTCCCGGGAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011455 17 + 1565135 ATGGCCA-GTCCCGGGAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375867 17 - 13651311 GTGGCCA-GTCCCGGGAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462528 17 - 108792865 ATGCCCA-GTTCTGAGAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112044 17 - 7082604 GTGGCCA-ATCCTGAGAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597841 17 + 5243153 GTGGCCA-ATCCTGAGAC i cebCap1.NW_016107454v1 C 0 I 4 s aotNan1.NW_018507213v1 1934211 17 - 1938448 GTGGCCA-ATGCTGAGAC i aotNan1.NW_018507213v1 C 0 I 11 s otoGar3.GL873658 2542321 16 + 5252280 --GTCCACATCCTGAGGT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418467 16 - 120129022 GTTGCAA-ATCTCGGGC- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 574813 17 + 2232271 ATTGCAA-ACCACAGGAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652784 736 - 159902609 I e canFam3.chr17 2046849 0 + 64289059 C e proCoq1.NW_012151163v1 964092 185 + 1238772 I a score=10706.000000 s hg38.chr2_KI270769v1_alt 59587 2 + 120616 AT s panTro5.chr2A 3521540 2 + 111504155 TT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382329 2 + 114371477 TT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260078 2 + 637652 AT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056414 2 + 81552678 AT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319126 2 + 108979918 AT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030264 2 - 111193037 AT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423234 2 + 3644372 AT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378674 2 - 10304083 AT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467541 2 - 107702431 AT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011472 2 + 1565135 AT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375884 2 - 13651311 AT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462545 2 - 108792865 GT i calJac3.chr14 C 0 I 2 s saiBol1.JH378218 3112061 2 - 7082604 GT i saiBol1.JH378218 C 0 I 2 s mm10.chr12 91418483 2 - 120129022 AT i mm10.chr12 C 0 C 0 s dasNov3.JH580157 574830 2 + 2232271 CT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652784 736 - 159902609 I e canFam3.chr17 2046849 0 + 64289059 C e proCoq1.NW_012151163v1 964092 185 + 1238772 I e otoGar3.GL873658 2542337 0 + 5252280 C e cebCap1.NW_016107454v1 597858 4 + 5243153 I e aotNan1.NW_018507213v1 1934228 11 - 1938448 I a score=980396.000000 s hg38.chr2_KI270769v1_alt 59589 165 + 120616 GGACTTAGGAATGCCCAACCCCGCCACCCAGCCGTGGCAACCCGATTCAAAACCAAATGCACCAAATGTGAACTCGAAGGCCATAGCCCTT-GCCAGCGACCCAGCCCTGAAGCGGGCATGATAGCCCAGAGAAG---A---GGCCTTTGATGTA----AGATGATTCTTAAATCG s panTro5.chr2A 3521542 165 + 111504155 GGACTTAGGAATGCCCAACCCCACCACCCAGCCGTGGCAACCCGATTCAAAACCAAATGCACCAAATGTGAACTCGAAGGCCATAGCCCTT-GCCAGTGACCCAGCCCTGAAGCGGGCATGATAGCCCAGAGAAG---A---GGCCTTTGATGTA----AGATGATTCTTAAATCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382331 165 + 114371477 GGACTTAGGAATGCCCAACCCCGCCACCCAGCCGTGGCAACCTGATTCAAAACCAAATGCACCAAATGTGAACTCGAAGGCCATAGCCCTT-GCCAGTGACCCAGCCCTGAAGCGGGCATGATAGCCCAGAGAAG---A---GGCCTTTGATGTA----AGATGATTCTTAAATCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260080 165 + 637652 GGACTTAGGAATGCCCAACCCTGCCACCCAGCTGTGGCAACCCGATTCAAAACCAAATGCACCAAATGTGAACTCGAAGGCCATAGCCCTT-GCCAGCGACCCAGCCCTGAAGCGGGCATGATAGCCCAGAGAAG---A---GGCCTTTGATGTA----AGATGATTCTTAAATCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056416 165 + 81552678 GGACTTAGGAATGCCCAACCCTGCCACTCAGCCGTGGCAACCCGATTCAAAACCGGATGCACCAAATGTGAACTCGAAGGCCGTAGCACTT-GCCAGTGAGCCAGCCCTGAAGCGGGCATGATAGCCCAGAGAAG---A---GGCCTTTGATGTA----AGACGATTCTTAAATCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319128 165 + 108979918 GGACTTAGGAATGCCCAGCCCTGCCACCCAGCCATGGCAATGCGATTCAAAACCAGATGCACCAAATGTGAACTCGAAGGCCATAGCACTT-GCCAGTGACCCAGTCCTGAAGCGAGCATGATAGTCCAGAGAAG---A---GGCCTTTGATGTA----AGACGATTCTTAAATTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030266 165 - 111193037 GGACTTAGGAATGCCCAGCCCTGCCACCCAGCCATGGCAATGCGATTCAAAACCAGATGCACCAAATGTGAACTCGAAGGCCATAGCACTT-GCCAGTGACCCAGTCCTGAAGCGAGCATGATAGTCCAGAGAAG---A---GGCCTTTGATGTA----AGACGATTCTTAAATTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423236 165 + 3644372 GGACTTAGGAATGCCCAGCCCTGCCATCCAGCCATGGCAATGCGATTCAAAACCAGATGCACCAAATGTGAACTCGAAGGCCATAGCACTT-GCCAGTGACCCAGTCCTGAAGCGAGCATGATAGTCCAGAGAAG---A---GGCCTTTGATGTA----AGACGATTCTTAAATTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378676 165 - 10304083 GGACTTAGGAATGCCCAGCCCTGCCTCCCAGCCATGGCAATGCGATTCAAAACCAGATGCACCAAATGTGAACTCGAAGGCCGTAGCACTC-GCCAGTGACCCAGTCCTGAAGCGAGCATGATAGTCCAGAGAAG---A---GGCCTTTGATGTA----AGACGATTCTTAAATTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467543 165 - 107702431 GGACTTAGGAATGCCCAGCCTTGCCACCCAGCCATGGCAATGCGATTCAAAATCAGATGCACCAAATGTGAACTCAAAGGCCATAGCACTC-GCCAGTGACCCAGTCCTGAAGCGAGCATGATAGCCCAGAGAAG---A---GGTCTTTGATGTA----AGACGATTCTTAAATTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011474 164 + 1565135 GGACTTAGGAATGCCCAGCCCTGCCTCCCAGCCATGGCAATGCGATTCAAAACCAGATGCACCAAATGTGAACTCGAAGGCCATAGCACTC-GCCAGTGACCCAGTCCTGAAGCGAGCATGATAGTCCAGAGAAG---A---GG-CCTTGATGTA----AGACGATTCTTAAATTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3375886 165 - 13651311 GGACTTAGGAATGGCCAGCCCTGCCACCCAGCCATGGCAGTGCGATTCAAAACCAGATGCACCAAATGTGAACTCCAAGGCCAGAGCACTT-GCCAGTGACCCAGTCCTGAAGCGAGCATGATAGCCCAGAGGAG---A---GGCCTTTGATGTG----AGATGATTCTTAAATTG i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2542337 155 + 5252280 -----------TGCCCAGCCGCCCTACTCAGCACCTCCAGCCCAATAACAACCCTGGTGCTGCAGGAGTG-ACTC-ACGGCCACAGAGCCA-GCAGGTGCTCCAGCCCCGAAGGTCTCGGGAACGGGGAGAAAAG--CA---GGCCCTCGCTGTAAT--AAAAGGTCCTCGAGTGC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418485 124 - 120129022 GGAC--AAGAAAGCCACTGGGCACTGCGCAGC--------------------------------AGTATGGAGTCTCGGTCCA----------CTGAAGAGCTAGA---GAGGGACACACGAGAACCCAGAGAAAGCCA---GGCTTTCCGGCTAGTAAAGATG--TCTTCCATTC i mm10.chr12 C 0 C 0 s dasNov3.JH580157 574832 169 + 2232271 GTGCTTGGGAATGCCCAGCAGTTCCACTGAGCAACTTCAACCTAATAGAAGATCCGTTGC--CAAAGATAAATTACAAGGCCACAGAAGTTAACCGATGATCGAGCCGTGAAGTACGCATGATAGCACAAAGAGA---ATTGAGCTCTTCATGTAAT--AAAAAGTTCTTAAATTC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652784 736 - 159902609 I e canFam3.chr17 2046849 0 + 64289059 C e saiBol1.JH378218 3112063 2 - 7082604 I e proCoq1.NW_012151163v1 964092 185 + 1238772 I e cebCap1.NW_016107454v1 597858 4 + 5243153 I e aotNan1.NW_018507213v1 1934228 11 - 1938448 I e calJac3.chr14 3462547 2 - 108792865 I a score=334922.000000 s hg38.chr2_KI270769v1_alt 59754 41 + 120616 TGCATTCTTTGCCTTGCTTTTCTCGGCAGTATGTGTTCTGT s panTro5.chr2A 3521707 41 + 111504155 TGCATTCTTTGCCTTGCTTTTCTCGGCAGTATGTGTTCTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382496 41 + 114371477 TGCATTCTTTGCCTTGCTTTTCTCGGCAGTATGTGTTCTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260245 41 + 637652 TGCATTCTTTGCCTTGCTTTTCTCGGCAGTATGTGTTCTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056581 41 + 81552678 TGCATTCCTTGTCTTGCTTTTCTTGGCACTATGTATTTTGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319293 41 + 108979918 TGCATTCTTTGCCTTGCTTTTCTTGGCACTATATGTTCTGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030431 41 - 111193037 TGCATTCTTTGCCTTGCTTTTCTTGGCACTATATGTTCTGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423401 41 + 3644372 TGCATTCTTTGCCTTGCTTTTCTTGGCACTATATGTTCTGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378841 41 - 10304083 TGCATTCTTTGCCTTGCTTTTCTTGGCACTATATGTTCTGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467708 41 - 107702431 TGCATTCTTTGCCTTGCTTTTCTTGGCACTATATGTTCTGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011638 41 + 1565135 TGCATTCTTTGCCTTGCTTTTCTTGGCACTATATGTTCTGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376051 41 - 13651311 TGCACTCTTTACCTTGCTTTTCTTGGCACTATATATTCTGT i colAng1.NW_012118821v1 C 0 C 0 s proCoq1.NW_012151163v1 964277 41 + 1238772 TGCATTCTTTGCCTCGTTTTTCGTGGCACTGTATGTTCTCT i proCoq1.NW_012151163v1 I 185 C 0 s otoGar3.GL873658 2542492 40 + 5252280 TGCCTTCTTTGCCTC-CTTTTCCTGGCACTGTATAGTATCT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418609 40 - 120129022 AGTCCTCTTTGCCTTTCTTTTCTTAGCAC-ATGCATCCCCT i mm10.chr12 C 0 I 1 s dasNov3.JH580157 575001 41 + 2232271 CACCTCCTTTTCCTTGTTTTTCTCAGCATTGTTTATTCTCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652784 736 - 159902609 I e canFam3.chr17 2046849 0 + 64289059 C e saiBol1.JH378218 3112063 2 - 7082604 I e cebCap1.NW_016107454v1 597858 4 + 5243153 I e aotNan1.NW_018507213v1 1934228 11 - 1938448 I e calJac3.chr14 3462547 2 - 108792865 I a score=68585.000000 s hg38.chr2_KI270769v1_alt 59795 7 + 120616 CAATCTG s panTro5.chr2A 3521748 7 + 111504155 CAATCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382537 7 + 114371477 CAATCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260286 7 + 637652 CAATCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056622 7 + 81552678 CAATCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319334 7 + 108979918 CAATCTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030472 7 - 111193037 CAATCTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423442 7 + 3644372 CAATCTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378882 7 - 10304083 CAATCTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467749 7 - 107702431 CAATCTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011679 7 + 1565135 CAATCTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376092 7 - 13651311 CAATCTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462549 7 - 108792865 CAATGTA i calJac3.chr14 I 2 C 0 s saiBol1.JH378218 3112065 7 - 7082604 CAATGTA i saiBol1.JH378218 I 2 C 0 s cebCap1.NW_016107454v1 597862 7 + 5243153 CAATGTG i cebCap1.NW_016107454v1 I 4 C 0 s proCoq1.NW_012151163v1 964318 7 + 1238772 CAATCTG i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2542532 7 + 5252280 TAGTCTG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418650 4 - 120129022 CGAC--- i mm10.chr12 I 1 C 0 s dasNov3.JH580157 575042 7 + 2232271 GATTCTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652784 736 - 159902609 I e canFam3.chr17 2046849 0 + 64289059 C e aotNan1.NW_018507213v1 1934228 11 - 1938448 I a score=219750.000000 s hg38.chr2_KI270769v1_alt 59802 15 + 120616 TGATCTGAGTAGAAA s panTro5.chr2A 3521755 15 + 111504155 TGATCTGAGTAGAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382544 15 + 114371477 TGATCTGAGTAGAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260293 15 + 637652 TGATCTGAGTAGAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056629 15 + 81552678 TGATCTGAATAGAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319341 15 + 108979918 TGATCTGAATAGAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030479 15 - 111193037 TGATCTGAATAGAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423449 15 + 3644372 TGATCTGAATAGAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378889 15 - 10304083 TGAGCTGAATAGAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467756 15 - 107702431 TGATCTGAATAGAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011686 15 + 1565135 TGATCTGAATAGAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376099 15 - 13651311 TGATCTGAATAGAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462556 15 - 108792865 TGATCTGAGTAGAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112072 15 - 7082604 TGATCTGAATAGAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597869 15 + 5243153 TGATCTGAATAGAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934239 15 - 1938448 TGATGTGAATAGAAA i aotNan1.NW_018507213v1 I 11 C 0 s proCoq1.NW_012151163v1 964325 15 + 1238772 TGATCTGAGTGGAAA i proCoq1.NW_012151163v1 C 0 I 60 s otoGar3.GL873658 2542539 15 + 5252280 TGGTCTGAGTGGAAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418654 15 - 120129022 TGGTGTGAGTAGTAA i mm10.chr12 C 0 C 0 s dasNov3.JH580157 575049 15 + 2232271 TCATCTGAATGTAAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652784 736 - 159902609 I e canFam3.chr17 2046849 0 + 64289059 C a score=579110.000000 s hg38.chr2_KI270769v1_alt 59817 52 + 120616 GAAGAAAGTGTAT--TTTCAAGGTATGAGGGGCCCA--GAGGACACTGTC---------CCAAAA s panTro5.chr2A 3521770 52 + 111504155 GAAGAAAGTGTAT--TTTCAAGGTGTGAGGGGCTCA--GAGGACACTGTC---------CCAAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382559 52 + 114371477 GAAGAAAGTGTAT--TTTCAAGGTGTGAGGGGCCCA--GAGGACACTGTC---------CCAAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260308 52 + 637652 GAAGAAAGTGTAT--TTTCAAGGTGTGAGGGGCCCA--GAGGACACTGTC---------CCAAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056644 52 + 81552678 GAAGAAAGTGTAT--TTTCAAGGTGTGAGGGGCCCA--GAGGACACTGTC---------CTAAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319356 52 + 108979918 GAAGAAAGTGCAT--TTTCAAGGTGTGAGGGGCCCA--GAGGACACTGTC---------CCAAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030494 52 - 111193037 GAAGAAAGTGCAT--TTTCAAGGTGTGAGGGGCCCA--GAGGACACTGTC---------CCAAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423464 52 + 3644372 GAAGAAAGTGCAT--TTTCAAGGTGTGAGGGGCCCA--GAGGACACTGTC---------CCAAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378904 52 - 10304083 GAAGAAAGTGCAT--TTTCAAGGTGTGAGGGGCCCA--GAGGACACTGTC---------CCAAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467771 52 - 107702431 GAAGAAAGTGCAT--TTTCAAGGTGTGAGGGGCCCA--GAGGACACTGTC---------CCAAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011701 52 + 1565135 GAAGAAAGTGCAT--TTTCAAGGTGTGAGGGGCCCA--GAGGACACTGTC---------CCAAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376114 52 - 13651311 GAAGAAAATGCAT--TTTCAAGGTGTGAGGGGCCCA--GAGGACACTGTC---------CCAAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462571 52 - 108792865 GAAGAAAGTATAT--TTTCAAGGGGTGAGGGGCCCA--GAAGACACTGTC---------CCAAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112087 52 - 7082604 GAAGGAAGTATAT--TTTCAAGGGGTGAGGGGCCCA--GAGGACACTGTC---------CCAAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597884 52 + 5243153 GAAGAAAGTATAT--TTTCAAGGGGTGAGGGGCCCA--GAGGACACTGTC---------CCAAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934254 52 - 1938448 GAAGAAAGTGTAT--TTTCAAGGGGTGAGGGGCCCA--GAGGACACTGTC---------CCAAAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2542554 59 + 5252280 -AGGACAGTGTAT--TTTCTGGATTTAAAGTTCCCA--AAGGACACTGTCCTCCCCGCTCCGAG- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418669 26 - 120129022 GAAAAGCACACAC-----------------AGACAG--GAGGACA-------------------- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 575064 56 + 2232271 AAGGAAAGTAGTTTATTTCGAGGTATGAAGGCTCCGTCAGGGACACTGTC---------TTTTAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652784 736 - 159902609 I e canFam3.chr17 2046849 0 + 64289059 C e proCoq1.NW_012151163v1 964340 60 + 1238772 I a score=583449.000000 s hg38.chr2_KI270769v1_alt 59869 46 + 120616 GCAGTGGTTGTGAGAGTGGCTTTGGAGTCAGGCTGACAGTCTGGAA s panTro5.chr2A 3521822 46 + 111504155 GCAGTGGTTGTGAGAGTGGCTTTGGAGTCAGGCTGACAGTCTGGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382611 46 + 114371477 GCAGTGGTTGTGAGAGTGGCTTTGGAGTCAGGCTGACAGTCTGGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260360 46 + 637652 GCAGTGGTTGTGAGAGTGGCTTTGGAGTCAGGCTGACAGTCTGGAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056696 44 + 81552678 GCAGTGGTTGTGAGA--GGCTTTGGAGTCAGGTTGACAGTCTGCAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319408 46 + 108979918 GCAGTAGTTGTGAGAGTGGCTTTGGAGTCAGGCTGACAGTCTGGAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030546 46 - 111193037 GCAGTGGTTGTGAGAGTGGCTTTGGAGTCAGGCTGACAGTCTGGAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423516 46 + 3644372 GCAGTGGTTGTGAGAGTGGCTTTGGAGTCAGGCTGACAGTCTGGAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3378956 46 - 10304083 GCAGTGGTTGTGAGAGTGGCTTTGGAGTCAGGCTGACAGTCTGGAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467823 46 - 107702431 GCAGTGGTTGTGAGAGTGGCTTTGGAGTCAGGCTGACAGCGTGGAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011753 46 + 1565135 GCAGTGGTTGTGAGAGTGGCTTTGGAGTCAGGCTGACAGTCTGGAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376166 46 - 13651311 GCAGTGGTTGTGAGAGTGGCTTTGGAGTCAGGCTGACAGTCTGGAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462623 46 - 108792865 GCagtggttgtgaaagtggctttggagtcagtctgaccatctggaa i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112139 46 - 7082604 GCagtggttgtgaacgcggctttggagtcagtctgacagtctggaa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597936 46 + 5243153 GCagtggttgtgaaagcggctttggagtcagtctgacagtctggaa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934306 46 - 1938448 GCagtggttgtgaaagcggctttggagtcagtctgacagtctggaa i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 964400 46 + 1238772 GCAGTGTCTGTGAGAATGGCTTCGGAGCCAGGCTGACAGCCTGGAA i proCoq1.NW_012151163v1 I 60 I 554 s otoGar3.GL873658 2542613 37 + 5252280 ACAGTGGTTATGAGGGTGGCTTTGGAGTCAGGCTGAT--------- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418695 26 - 120129022 --------------------TCTGGAGCCACACAAACTGGGTGGAA i mm10.chr12 C 0 C 0 s dasNov3.JH580157 575120 46 + 2232271 GCCAGGAGTGTGCGatggcctgtggattcaggcagagtaggtaaaa i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652784 736 - 159902609 I e canFam3.chr17 2046849 0 + 64289059 C a score=2460406.000000 s hg38.chr2_KI270769v1_alt 59915 271 + 120616 ACTTCCAGGTCC------GCTCTGA--AGTGCCGGCTGCATGACCAGC-----CCTCCAGCCTGTGTCCGCTTCGGCCTTCTT-TGTGCAAGTGA-GAGCATTGCTGATCCCCCCGG---------GGTGGCGA----GGGGGCGCACGTCAGTGACCTCGCAT--GGTGCCTGCCAGGCACGTGGTCCGTGTTTCATGATTC-TTTGAGAGCTTTGGAGCAGCTCCAAGAAGACT-CT-TTT-------------ACTTTGAAGA---------------GGT-------------------------CCCCTGG-------------GAAGCTGTGGTGGGACTGG-AAGGTCGCAGGACTTTC--CAAAA-- s panTro5.chr2A 3521868 271 + 111504155 ACTTCCAGGTCC------GCTCTGA--AGTGCCGGCTGCATGACCAGC-----CGTCCAGCCTGTGTCCGCTTCGGCCTTTTT-TGTGCAAGTGA-GAGCATTGCTGATCCCCCCGG---------GGTGGCCA----GGGGGCACACGTCAGTGACCCCGCAC--GGTGCCTGCCAGGCACGTGGTCGGTGTTTCATGATTC-TTTGAGAGCTTTGGAGCAGCTCCAAGAAGACT-CT-TTT-------------ACTTTGAAAA---------------GGT-------------------------CCCCTGG-------------GAAGCTGTGGTGGGACTGG-AAGGTCGCAGGACTTTC--CAAAA-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382657 271 + 114371477 ACTTCCAGGTCC------GCTCTGA--AGTGCCGGCTGCATGACCAGC-----CGTCCAGCCTGTGTCCGCTTCGGCCTTTTT-TGTGCAAGTGA-GAGCATTGCTGATCCCCCCGG---------GGTGGCCA----GGGGGCACACGTCAGTGACCCCGCAC--GGTGCCTGCCAGGCACGTGGTCGGTGTTTCATGATTC-TTTGAGAGCTTTGGAGCAGCTCCAAGAAGACT-CT-TTT-------------ACTTTGAAAA---------------GGT-------------------------CCCCTGG-------------GAAGCTGTGGTGGGACTGG-AAGGTCGCAGGACTTTC--CAAAA-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260406 271 + 637652 ACTTCCAGGTCC------GCTCTGA--AGTGCCGGCTGCATGACCAGC-----TGTCCAGCCTGTGTCCGCTTCGGCCTTCTT-TGTGGAAGTGA-GAGCATTGCTGATCCCCCTGG---------GGTGGCCA----GGGGGCACACGTCAGTGACCCCGCAC--GGTGCCTGCCAGGCACGTGGTCGGTGTTTCATGATTC-TTTGAGAGCTTTGGAGCAGCTCCAAGAAGACT-CT-TTT-------------ACTTTGAAGA---------------GGT-------------------------CCCCTGG-------------GAAGCTGTGGTGGGACTGG-AAGGTCGCAGGACTTTC--CAAAA-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3056740 271 + 81552678 ACTTCCAGGTCC------GCTCTGA--AGTGCCGGCTGCATGACCAGC-----CGTCCAGCCTGTGTCCGCCTCGGCCTTCTT-TGTGCAAGTGAGGAGTATTGCTGACCCCCCCGG---------GGTAGCC-----GGGGGCACACGTCAGTGACCCCGCAC--GGTGCCTGCCAGGCATGTGGTCTGTGTTTCATGATTC-TTTGAGAGCTTTGGAGCAGCTCCAAGAAGAAGACT-CTC-------------ACTTTGAAGA---------------GGT-------------------------CCCCTGG-------------GAAGCTGTGGTGGGACTGG-AAGGTC-CAGGACTTCC--CAAAA-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319454 268 + 108979918 ACTTCCAGGTCC------ACTCTGA--AGTGCCAGCCGCATGACCAGT-----TGTCCAGCCTGTGTCTGCCTTGGCCTCCTT-TGTGCAAGTGAGGAACATGGCTGATCCCCCCGG---------GGTGGCAA----GGGGGCACACGTAAGTGACCCCACAT--GGTGCCT----GGCACATGGTCGGTGTTTCATGATTC-TTTGAGAGCTTTGGAGCAGCTCCAAGAAACCT-CT-TTC-------------ACTTTGAAGA---------------GGT-------------------------CCCCTGG-------------GAAGCTGTGGTGGGACTGG-AAGGTCTCAGGACTTCT--CAAAG-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030592 268 - 111193037 ACTTCCAGGTCC------ACTCTGA--AGTGCCAGCCGCATGACCAGT-----TGTCCAGCCTGTGTCTGCCTTGGCCTCCTT-TGTGCAAGTGAGGAACATGGCTGATCCCCCCGG---------GGTGGCAA----GGGGGCACACGTAAGTGACCCCACAT--GGTGCCT----GGCACATGGTCGGTGTTTCATGATTC-TTTGAGAGCTTTGGAGCAGCTCCAAGAAACCT-CT-TTC-------------ACTTTGAAGA---------------GGT-------------------------CCCCTGG-------------GAAGCTGTGGTGGGACTGG-AAGGTCTCAGGACTTCT--CAAAG-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423562 268 + 3644372 ACTTCCAGGTCC------ACTCTGA--AGTGCCGGCCGCATGACCAGT-----TGTCCAGCCTGTGTCTGCCTTGGCCTCCTT-TGTGCAAGTGAGGAACATGGCTGATCCCCCCGG---------GGTGGCAA----GGGGGCACACGTAAGTGACCCCACAT--GGTGCCT----GGCACATGGTCGGTGTTTCATGATTC-TTTGAGAGCTTTGGAGCAGCTCCAAGAAACCT-CT-TTC-------------ACTTTGAAGA---------------GGT-------------------------CCCCTGG-------------GAAGCTGTGGTGGGACTGG-AAGGTCTCAGGACTTCT--CAAAG-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3379002 268 - 10304083 ACTTCCAGGTCC------ACTCTGA--AGTGCCGGCCGCATGACCAGT-----TGTCCAGCCTGTGTCTGCTTTGGCCTCCTT-TGTGCAAGTGAGGAACATGGCTGATCCCCCCGG---------GGTGGCAA----GGGGGCACACGTAAGTGACCCCGCAT--GGTGCCT----GGCACGTGGTCGGTGTTTCATGATTC-TTTGAGACCTTTGAAGCAGCTCCAAGAAACCT-CT-TTC-------------ACTTTGAAGA---------------GGT-------------------------CCCCTGG-------------GAAGCTGTGGTGGGACTGG-AAGGTCTCAGGACTTCC--CAAAG-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3467869 268 - 107702431 ACTTCCAGGTCC------ACTCTGA--AGTGCCGGCCGCATGACCAGT-----TGCCCAGCCTCTGTCTGCCTTGGCCTCCTT-TGTGCAAGTGAGGAACATTGCTGATCCGCCCGG---------GGTGGCAA----GGGGGCACACGTAAGTGACCCCGCAT--GGTGCCT----GGCATGTGGTCGGTGTTTCATGATTC-TTTGAGAGCTTTGGAGCAGCTCCAAGAAACCT-CT-TTC-------------ACTTTGAAGA---------------GGT-------------------------CCCCTGG-------------GAAGCTGTGGTGGGACTGG-AAGGTCTCAGGACTTCC--CAAAG-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1011799 268 + 1565135 ACTTCCAGGTCC------ACTCTGA--AGTGCCGGCCGCATGACCAGT-----TGTCCAGCCTGTGTCTGCCTTGGCCTCCTT-TGTGCAAATGAGGAACATGGCTGATCCCCCCAG---------GGTGGCAA----GGGGGCACACGTAAGTGACCCCGCAT--GATGCCT----GGCACGTGGTCGGTGTTTCATGATTC-TTTGAGACCTTTGGAGCAGCTCCAAGAAACCT-CT-TTC-------------ACTTTGAAGA---------------GGT-------------------------CCCCTGG-------------GAAGCTGTGGTGGGACTGG-AAGGTCTCAGGACTTCC--CAGAG-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376212 271 - 13651311 ACTTCCAGGTCC------ACTCTGA--AGTGCCGGCCGCATGACCAGT-----TGTCCAGCCTGTGTCTGCCTTGGCCTCCTT-TGTGCAAGTGAGGAACATTGCTGATCCCCCCAG---------GGTGGCAA----GGGGGCACATGTAAGTGACCCCGCATGGGGTGCCT----GGCACGTGGTCGGTGTTTCATGATTCTTTTGAGAGCTTTGGAGCAGCTCCAAGAAACCT-CT-TTC-------------ACTTTGAAGA---------------GGT-------------------------CCCCTCG-------------GAAGCTGTGGTGGGACTGG-AAGGTCGCAGGACTTCC--CAAAG-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462669 265 - 108792865 acttccaggtcc------actctga--cgtgccagctacatgaccagc-----tgtccagcctgggtccacctcagcctcctt-tctgcaagcaaggaacattgctaat--atccag---------ggtggcc-----agggtcacatgtaagtgacaccacac--agtccct----ggcatgtggtcggtgtttcatgattc-ttTGAGAGCTTTGGGGCAGCTCCAGGAAACCT-CTTTTC-------------ACTTTGAAGA---------------GGT-------------------------CCCATAG-------------GAAGCCCTGGTGGGGCTGG-AAGGTC-CACGGATTCC--CAAAA-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112185 261 - 7082604 acttccaggtcc------gctccga--catgccagctacatgaccagc-----tgtgcagcctgggtctgcctcagcctcctt-tctgcaagtgaagaacatggctgat--acccag---------ggtggcc-----gggggcacatgtaagtg--accgcac--ggtccct----ggcatgtggtcagtgtttcatgattc-ttggAGAGCTTTGGAGCAGCTCCAAGAAACCT-CTTTTC-------------ACTTTGAAGA---------------GGT-------------------------CCCCTGT-------------GAAGCCAAGG-ACCCCTGG-AAGGTC-C-TAATGTCC--CGAAA-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 597982 265 + 5243153 acttccaggtcc------gctccaa--tgtgccagctacatgaccagc-----tgcccagcctgggtccgcctcagcctcctt-tctgcaagcgagggacattgctgat--acccag---------ggtggct-----gggggcagacataagtgacaccgcac--ggtccct----ggcacgtggtcagtgtttcatgaTTC-TTTGAGAGCTTTGGAGCAGCTCCAAGAAACCT-CTTTTC-------------ACTTTGAAGA---------------GGT-------------------------CCCCTAG-------------GAAGCCAAGGTAGGACTGG-AGGGTC-CTAGGCTTCC--CAAAA-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934352 265 - 1938448 acttccaggtcc------gctccga--cgtgccagctacgtgaccagc-----tgtccagcctgggtccgcctcagcctcctt-tctgcaagcgaggaacattgctgat--acccaG---------GGTGGCC-----GGGGGCACATGTAAGTGACACCGCAC--GGTCCCT----GGCACGTGGTCGGTGTTTCATGATTC-CTTGAGAGCTTTGGAGCAGCTCCAAGAAACCT-CTCTTC-------------ACTTTGAAGA---------------GGT-------------------------CCCCTAG-------------GAAGCCATGGTGAGACTGG-AAGGTC-CTAGGCTTCC--CAAAA-- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2542650 269 + 5252280 ---------TCT------GCCCCCG--GGTG------GTGTGAT--GC-----TGCCTCGCCTGTG-CAGCCTCAGCCTCTTTGTCTGCCAGTGGGACATGTCATTG--CCACCTGG---------GCTGCCAA----GAGG--------------CTCCGCCT--GGTACAT----G------AGTGAGTATTTAATCGCTC-TTAAAGTGCCATGGAGCAGCTCCAGGAAACCT-TT-TTC-------------CCTTTGGAAA---------------GTCTCTCTTCTGAAAGACTTTCACCCCACCCCCAGACCCCCCACCCCCGAGGCTCAGTAGGGATGGG-AAGGTCCTAGGGCTTCTGGAGAAG-- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418721 199 - 120129022 ------------------ACACCGA--AGTGT--ACATCCTGACCAG-------GCCTGGCCTGC-------------------TGTGC---TGAGCAACGCTACTAGT--------------------------------GGCCTGCACCAGTGACCACTCAA--TG---CT----GGAGCAGTGGGGATATTTAATAATTC-TTCAAGTGTCCAAGAGCA-CTCTGAGAAGCCT-CT-TCCCTGTGGGAAGCCTACCTTCCAGA---------------AGG-------------------------CCCCCAG-------------GTAGCCATGGTAAAGATGG--------------------------- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 575166 309 + 2232271 atccccaaatccaaagtgactctgactcttactagctgaatgaccagctcttttattcagcctccctaaggctcaacttcctcatctctaaatgaataatgtgacca--cctccttgcattattttgaggacaaaatcagtgatacatataaatgaca--gcac--agtggct----ggtccatggtgagtgttaaataaTTC-TTTATGTTGTTTGGAGCAGCTCCAAGAAATCT-AT-TTA-------------ACTTTGGAAAATCTCCTTTCCAAAGGGC-------------------------TCTCTAG-------------GAAACTGTAGCAGAAATGGGAAGGCTGCAAGACTTGT--CAAAGAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652784 736 - 159902609 I e canFam3.chr17 2046849 0 + 64289059 C e proCoq1.NW_012151163v1 964446 554 + 1238772 I a score=493751.000000 s hg38.chr2_KI270769v1_alt 60186 49 + 120616 TCTAAGTCTCTCCAGAACAGAGCTGCTCCAAGCTTTAGTCTCCACTCAA s panTro5.chr2A 3522139 49 + 111504155 TCTAAGTCTCTCCAGAACAGAGCTGCTCCAAGCTTTAGTCTCCACTCAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382928 49 + 114371477 TCTAAGTCTCTCCAGAACAGAGCTGCTCCAAGCTTTAGTCTCCACTCAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260677 49 + 637652 TCTAAGTCTCTCCAGAACAGAGCTGCTTCAAGCTTTAGTCTCCACTCAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3057011 49 + 81552678 TCTAAGGCTTTCCAGAACAGACCTGCTCCAACCTTTAGTCTCCACTCAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319722 49 + 108979918 TCTAAGGCTCTCCAGCACAGACCTGCTCCAACCTTTAGTCTCCACTCAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030860 49 - 111193037 TCTAAGGCTCTCCAGCACAGACCTGCTCCAACCTTTAGTCTCCACTCAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423830 49 + 3644372 TCTAAGGCTCTCCAGCACAGACCTGCTCCAACCTCTAGTCTCCACTCAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3379270 49 - 10304083 TCTAAGGCTCTCCAGCACAGACCTGCTCCAACCTTTAGTCTCCACTCAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3468137 49 - 107702431 TCTAAGGCTCTCCAGCACAGACCTCCTCCAACCTTTAGTCTCCACTCAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1012067 49 + 1565135 TCTAAGGCTGTCCAGCACAGACCTGCTCCAACCTTTAGTCTCCACTCAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376483 49 - 13651311 TCTAAGTCTCTCCGGAACAGACCTGCTCCAACCTTTAGTCTCCACTCAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3462934 49 - 108792865 TCTAAGGCCCTCCAGAGTAGACCTGCTCTAGCCTTTAGTCCGGACTCAA i calJac3.chr14 C 0 I 1274 s saiBol1.JH378218 3112446 49 - 7082604 TCTGAGGCTCTCCAGAAGAGACCTGCTCTCACCTTTAGTCTGGACTCAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 598247 49 + 5243153 TCTAACACTCTCCAGAATAGACCTGCTCTAACCTTTAATCTGGACTCAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934617 49 - 1938448 TCTGAGGCTCTCCAGAATAGACCTGCTCTAACCGTTAGTCTGGACTCAG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2542919 28 + 5252280 CCTGAGGCTCTCAGG--CAGACCTGCCCCA------------------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2046849 48 + 64289059 TCCGAGCCCCTCTAGGGCGGGCCTGCTGTCA-CTTTGGTCTGGACTCAA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 575475 49 + 2232271 ATCAAGACACTCTGGGACAGGCCTGCTCTAACCGTTGGTTTGGGTTAGG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2652784 736 - 159902609 I e mm10.chr12 91418920 0 - 120129022 C e proCoq1.NW_012151163v1 964446 554 + 1238772 I a score=132122.000000 s hg38.chr2_KI270769v1_alt 60235 11 + 120616 AAGGGTCCACT s panTro5.chr2A 3522188 11 + 111504155 AAGGGTCCACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382977 11 + 114371477 AAGGGTCCACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260726 11 + 637652 AAGGGTCCACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3057060 11 + 81552678 AGGGGTCCACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319771 11 + 108979918 AAGGGTCCACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030909 11 - 111193037 AAGGGTCCACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423879 11 + 3644372 AAGGGTCCACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3379319 11 - 10304083 AAGGGTCCACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3468186 11 - 107702431 AAGGGTCCACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1012116 11 + 1565135 AAGGGTCCACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376532 11 - 13651311 AAGGGTCCACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3464257 11 - 108792865 AAGGGTCCACT i calJac3.chr14 I 1274 C 0 s saiBol1.JH378218 3112495 11 - 7082604 AAGCGTCCACT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 598296 11 + 5243153 AAGGGTCCACT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934666 11 - 1938448 AAGGGTCCACT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2542947 5 + 5252280 ------CCTCT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418920 11 - 120129022 GAAGGCCTACC i mm10.chr12 C 0 C 0 s canFam3.chr17 2046897 9 + 64289059 GTAGGTTT--T i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 575524 11 + 2232271 ATAGATCCACT i dasNov3.JH580157 C 0 I 453 e micMur3.chr8 2652784 736 - 159902609 I e proCoq1.NW_012151163v1 964446 554 + 1238772 I a score=506467.000000 s hg38.chr2_KI270769v1_alt 60246 49 + 120616 TAGTAAGTTCTCAGGTCCTTGGCTTAGTGCCAGCTTCCCAGTAGTTTGT s panTro5.chr2A 3522199 49 + 111504155 TAGTAAGTTCTCAGGTCCTTGGCTTAGTGCCAGCTTCCCAGTAGTTTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3382988 49 + 114371477 TAGTAAGTTCTCAGGTCCTTGGCTTAGTGCCAGCTTCCCAGTAGTTTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260737 49 + 637652 TAGGAAGTTCTCAGGTCCTTGGCTTAGTGCCAGCTTCCCAGTAGTTTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3057071 49 + 81552678 TAGTAAGTTCTCAGGTCCTTGGCTTAGTGCCATCTTCCCAGTAGTTTGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319782 49 + 108979918 TAGTAAGTTCTCAGGTCCTTGGCTTAGTGTCAGCTTCCCAGTAGTTCGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030920 49 - 111193037 TAGTAAGTTCTCAGGTCCTTGGCTTAGTGTCAGCTTCCCAGTAGTTCGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423890 49 + 3644372 TAGTAAGTTCTCAGGTCCTTGGCTTAGTGTCAGCTTCCCAGTAGTTCGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3379330 49 - 10304083 TAGTAAGTTCTCAGGTCCTTGGCTTAGTGTCAGCTTCCCAGTAGTTCGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3468197 49 - 107702431 GAGTAAGTTCTCAGGTCCTTGGCTTAGCGCCAGCTTCCCAGTGGTTTGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1012127 49 + 1565135 TAGTAAGTTCTCAGGTCCTTGGCTTAGTGTCAGCTTCCCAGTAGTTCGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376543 49 - 13651311 TAGTAAGTTCTCGGGTCCTTGGCTTAGTGTCAGCTTCCCAGTAGTTTGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3464268 42 - 108792865 TAGGAAGTCCTCAGGTCC------TAGTGCCAACTTCTCAG-GCTTTGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112506 49 - 7082604 TAGGAAGTCCTCAGGTCCTTGACTTAGTGCCAGCTTCCCAGTACTGCGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 598307 49 + 5243153 TAGGAAGTCCTCAGGTCCTTGACGTCGTGCCAGCTTCTCAGTACTTTGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934677 49 - 1938448 TAGGAAGTCCTCAGTTGCTTGACTTAGTGCCAGCTTCTCAGTACTTTGT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2542952 48 + 5252280 GAGAGGGTCCTCGAGTCCAAGACTCACTG-CAGCTTCTCAGCAGTCTGT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418931 36 - 120129022 TATT---------GGTCCTTGAGTGGGTGTTAGTCTCACA----TGTGT i mm10.chr12 C 0 C 0 s canFam3.chr17 2046906 48 + 64289059 TAGTTGAGTCTTTGGTCCTTGAATTAGGGCCAGCCAC-CAGTTGTTTGT i canFam3.chr17 C 0 C 0 e micMur3.chr8 2652784 736 - 159902609 I e proCoq1.NW_012151163v1 964446 554 + 1238772 I e dasNov3.JH580157 575535 453 + 2232271 I a score=502543.000000 s hg38.chr2_KI270769v1_alt 60295 40 + 120616 ATACTAGATGCCTTGGGAATAAAACCAGTTCCCTAAACCT s panTro5.chr2A 3522248 40 + 111504155 ATATTAGATGCCTTGGGAATAAAACCAGTTCCCTAAACCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3383037 40 + 114371477 ATATTAGATGCCTTGGGAATAAAACCAGTTCCCTAAACCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260786 40 + 637652 ATACTAGGTGCCTTGGGAATAAAACCAGTTCCCTAAACCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3057120 40 + 81552678 ATATTAGATGCCTTGGGAATAAAACCAGTTCCCTAAACCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319831 40 + 108979918 ACACCAGATGCCTTGGGAATAAAACCAGTTCCCTAAACCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5030969 40 - 111193037 ACACCAGATGCCTTGGGAATAAAACCAGTTCCCTAAACCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423939 40 + 3644372 ACACTAGATGCCTTGGGAATAAAACCAGTTCCCTAAACCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3379379 40 - 10304083 ACACTAGATGCCTTGGGAATAAAACCAGTTCCCTAAACCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3468246 40 - 107702431 ACACTAGATGCCTTGGGAATAAAACCAGTTCCCTAAACCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1012176 40 + 1565135 ACACTAGATGCCGTGGGAATAAAACCAGTTCCCTGAACCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376592 40 - 13651311 ACACTAGATGCCTTGGGAATAAAGCCAGTTCCCGAAACCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3464310 40 - 108792865 ATACTAGATGCCTCAGGAATAAAATCAGTTCCCTAAACTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112555 40 - 7082604 ATACTAAATGCCTCAGGAATAAAACCAGTTCCCTGAACCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 598356 40 + 5243153 ATACTAGATGCCTCAGGAATAAAACCAGTTCCCTAAACCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934726 40 - 1938448 ATACTAGATGCCTCAGGAACAAAACCAGTTCCTTAAACCT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2653520 40 - 159902609 ATACCAGATGCCTCGTGAATAAAACCAGCTCCCTAAACCT i micMur3.chr8 I 736 I 140 s otoGar3.GL873658 2543000 40 + 5252280 ATTCCAGATGCCTCGTATACAAAACTGGTTCCCCAAACCT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91418967 32 - 120129022 GTGCC-GAGACCTCATGTCTACAGCAAGCCCTC------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2046954 40 + 64289059 ACATAGGATACTTTGTGCATAAAACCCATTCCCCAAAAGA i canFam3.chr17 C 0 C 0 e proCoq1.NW_012151163v1 964446 554 + 1238772 I e dasNov3.JH580157 575535 453 + 2232271 I a score=1525559.000000 s hg38.chr2_KI270769v1_alt 60335 157 + 120616 ATCCC--------GTGCTCA-CCCACGACCCGTGACAGCT-GCCAAAGGGACAGACGCAAAGGCTCCTTCCTCAAGGC-CCCCTGCAGACAGCACTTTCCACACTGAAGGTGTCA---GTGACCCAGCCAGAAAACCTGCTTCACCACCTCCT-GGATAACTGCATAGG-ATG------ s panTro5.chr2A 3522288 157 + 111504155 ATCCC--------GCGCTCA-CCCACGACCCATGACAGCC-GCCAAAGGGACAGACGCAAAGGCTCCTTCCTCAAGGC-CCCCTGCAGACAGCACTTTCCACACTGAAGGTGTCA---GTGACCCAGCCAGAAAACCTGCTTCACCACCTCCT-GGATAACTGCATAGG-ATG------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3383077 157 + 114371477 ATCCC--------GCGCTCA-CCCACGACCCATGACAGCC-GCCAAAGGGACAGACGCAAAGGCTCCTTCCTCAAGGC-CCCCTGCAGACAGCACTTTCCACACTGAAGGTGTCA---GTGACCCAGCCAGAAAACCTGCTTCACCACCTCCT-GGATAACTGCATAGG-ATG------ i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260826 157 + 637652 ATCCC--------GCGCTCA-CCCACGACCCGTGACAGCC-GCCAAAGGGACAGACGCAAAGGCTCCTTCCTCAAGGC-CCCCTGCAGACAGCACTTTCCACATTGAAGGTGTCA---GTGACCCAGCCAGAAAACCTGCTTCACCACCTCCT-GGATAACTGCATAGG-ATG------ i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3057160 165 + 81552678 ATCCCATGATCCTGCACTCA-CCCACGACCCGTGACAGCC-GCCAAAGGGATAGGCGCAAAGGCTCCTTCCTCAAGGC-CCCCTGCAGACAGCACTTTCCACACTGAAGGTGCCA---GTGACCCAACCAGAAAACCTGCTTCACCACCTCCT-GGATGACTGCATAGG-ATG------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3319871 157 + 108979918 ATCCC--------GTGCTCA-CCCACGACCCGTGACAGCC-GCCAAAGGGACAGGCACAAAGGCTCCTTCCTCAAGGC-CCCCTGCAGACAGCACTTCCCACACCGAAGGTGTCC---GTGACCCAGCCGGAAAGCCTGCTTCACCACCTCCT-GGATAACGGCATAGG-ATG------ i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5031009 157 - 111193037 ATCCC--------GTGCTCA-CCCACGACCCGTGACAGCC-GCCAAAGGGACAGGCACAAAGGCTCCTTCCTCAAGGC-CCCCTGCAGACAGCACTTCCCACACCGAAGGTGTCC---GTGACCCAGCCGGAAAGCCTGCTTCACCACCTCCT-GGATAACGGCATAGG-ATG------ i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3423979 157 + 3644372 ATCCC--------GTGCTCA-CCCACGACCCGTGACAGCC-GCCAAAGGGACAGGCACAAAGGCTCCTTCCTCAAGGC-CCCCTGCAGACAGCACTTCCCACATCGAAGGTGTCC---GTGACCCAGCCGGAAAGCCTGCTTCACCACCTCCT-GGATAACGGCATAGG-ATG------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3379419 157 - 10304083 ATCCC--------GTGCTCA-CCCACGACCCGTGACAGCC-GCCGAAGGGACAGGCACAAAGGCTCCTTCCTCAAGGC-CCCCTGCAGACAGCACTTTCCACACCGAAGGTGTCC---GTGACCCAGCCGGAAAACCTGCTTCACCACCTCCT-GGATAACTGCATAGG-ATG------ i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3468286 157 - 107702431 ATGCC--------GCGCTCA-CCCACGACCCGTGACAGCC-GCCAAAGGGACAGGCACAAAGGCTCCTTCCTCAAGGC-CCCCTGCAGACAGCACTTTCCACACTGAAGGTGTCC---GTGGCCCAGCCGGAAAACCTGCTTCACCACCTCCT-GGATAACTGCATGGG-ATG------ i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1012216 157 + 1565135 ATCCC--------GTGCTCA-CCCACGACCCGTGACAGCT-GCCAAAGGGACAGGCACAAAGGCTCCTTCCTCAAGGC-CCCCTGCAGACAGCACTTTCCACACTGAAGGTGTCC---GTGACCCAGCCGGAAAACCTGCTTCACCACCTCCT-GGATAACGGCATAGG-ATG------ i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376632 157 - 13651311 ACCCT--------GCGCTCA-CACACGACCCGTGACAGCT-ACCAAAGGGACAGGCACAAAGGCTCCTTCCTCAAGGC-CCCCTACAGACAGCACTTTCCACGCTGAAGGTGTCC---GTGACCCAGCCAGAAAACCTGCTTCACCGCCTCCT-GGATAACTGCATAGG-ATG------ i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3464350 157 - 108792865 TTCCC--------ATGCTCACCCCACGACCCGTGACAGCC-ACCAAAGGGACAGGCGTGAAGGCTCCTTCCTCAAGGC-CTCCTGCAGACAGCACTTTCCACAG-GAAGGCCTCG---GTTACGCAGCCAGAAAACCTGCTTCACCACCTCCC-GGATAGTTGCATATG-ATG------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112595 157 - 7082604 ATCCC--------ACGCTCACCCCACGACCCACGACAGCC-ACCAAAGGGACGGGCGCGATGGCTTCTTCCTCAAGGC-CTCCCACAGACAGCACTTTCCACAC-GAAGGCGTCG---GTGACGCAGCCAGAAAACCTGCTTCACCACCTCCC-GGATAGCTGCATATG-ATG------ i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 598396 157 + 5243153 ATCCC--------ACGCTCACCCCACGACCCGTGACAGCC-GCCAAAGGGACAAGCACGAAGGCTCCTTCCTCAAGGC-CTCCTGCAGACAGCAATTTCCACAC-GAAGGCGTCG---GTGACGCAGCCAGAAAACCTGCTTCACCACCTCGC-GGTTAGCTGCATATG-ATG------ i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934766 122 - 1938448 ATCCC--------ATGCTCACCCCACGACCCGTGACAGCT-GCCAAAGGGACAGGCGCGAAGGCTCCTTCCTCAAGGC-CTCC---------------------------------------CGCAGCCAGAAAACCTGCTTCACCACCTCCC-AGATAGCTGCATATG-ATG------ i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2543040 135 + 5252280 ATCTC--------ACCCCAA-TCTCCAGCCCATGACAGCCTGCCAAAGGGACA-----------------------GC-CTCCTGCCGATTGTGATCCCCAGACCAAAGGTGGCA---GTCAC-CAGTTGGAACACCTGCTTCACTACCTCCTCAGATAACTGCACAGG-ACT------ i otoGar3.GL873658 C 0 I 1 s mm10.chr12 91418999 98 - 120129022 ---------------------------ACTCATGACAGCT-CCTGCAGG-----------------------CCAGGG-CCCCAGCCCAGAG---------------AGGTGTGC------AGCAAGTTAGGACACCTGCCCAGCCACCTACTCAGATAACTGTAAAAC-TC------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2046994 152 + 64289059 ACCCC--------ATGC-CA-CCTGTAATCCGTGGCAGCCCACCAAAGAGAGAGGTA-GGAGGCTCCTTCCCCAGGGCTTTCCTACAAGCTGTGGTCCC------AAGAGTGTCACCTGAAGCTCATCAGAAGTACGGGCTTTG----------GGATCACAGCAGAGGCATACAAATC i canFam3.chr17 C 0 C 0 e micMur3.chr8 2653560 140 - 159902609 I e proCoq1.NW_012151163v1 964446 554 + 1238772 I e dasNov3.JH580157 575535 453 + 2232271 I a score=151461.000000 s hg38.chr2_KI270769v1_alt 60492 11 + 120616 AGAACATAGAT s panTro5.chr2A 3522445 11 + 111504155 AGAACATAGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3383234 11 + 114371477 AGAACATAGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260983 11 + 637652 AGAACATAGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3057325 11 + 81552678 AGAACATAGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3320028 11 + 108979918 AGGACACAGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5031166 11 - 111193037 AGGACACAGAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3424136 11 + 3644372 AGGACACAGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3379576 11 - 10304083 AGAACACAGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3468443 11 - 107702431 AGAACACAGAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1012373 11 + 1565135 AGAACACAGAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376789 11 - 13651311 AGAACACAGAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3464507 11 - 108792865 AGAACACAGAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112752 11 - 7082604 AGAACACAGAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 598553 11 + 5243153 AGAACACAGAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934888 11 - 1938448 AGAACACAGAT i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2653700 11 - 159902609 AGAACATGGAT i micMur3.chr8 I 140 C 0 s proCoq1.NW_012151163v1 965000 11 + 1238772 AGAACATGGAT i proCoq1.NW_012151163v1 I 554 C 0 s otoGar3.GL873658 2543176 11 + 5252280 AGAGCAGGAAC i otoGar3.GL873658 I 1 C 0 s mm10.chr12 91419097 7 - 120129022 --AAAGCAG-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2047146 11 + 64289059 AGAACCTAGAT i canFam3.chr17 C 0 I 73 e dasNov3.JH580157 575535 453 + 2232271 I a score=1727211.000000 s hg38.chr2_KI270769v1_alt 60503 123 + 120616 TTGGGTCTCTTTAAATATGAATAGGTTACAAATTGCCTTTTTAAATATTGCTTGAGAT-CAAGTGGTAGTGGTTATATATGGAGTCAAGCA-GCTGGGATATTCATTCAAGGCGTGTAATTTTC-T s panTro5.chr2A 3522456 123 + 111504155 TTAGGTCTCTTTAAATATGAATAGGTTACAAATTGCCTTTTTAAATATTGCTTGAGAT-CAAGTGGTAGTGGTTATATATGGAGTCAAGCA-GCTGGGATATTCATTCAAGGCGTGTAATTTTC-T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3383245 123 + 114371477 TTAGGTCTCTTTAAATATGAATAGGTTACAAATTGCCTTTTTAAATATTGCTTGAGAT-CAAGTGGTAGTGGTTATATATGGAGTCAAGCA-GCTGGGATATTCATTCAAGGCGTGTAATTTTC-T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 260994 123 + 637652 TTGGGTCTCTTTAAATATGAATAGGTTACAAATTGCCTTTTTAAATATTGCTTGAGAT-CAAGTGGTAGTGGTTATATATGGAGTCAAGCA-GCTGGGATATTCATTCAAGGCGTGTAATTTTC-T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3057336 122 + 81552678 TTGGGTCTCTTTAAATATGAATAGGTTACAAATTGCCTTTTTAAAT-TTGCTTGAGAT-CAAGTGGTAGTGGTTATATATGGAGTCAAGCA-GCTGGGGTATTCATTCAAGGCATATAATTTTC-T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3320039 123 + 108979918 TTGGGTCTCTTTAAATATGAATAGGTTACAGATTGCCTTTTTAAATATTGCTTGAGAT-CAAGTGGTGGTGGTTATATATGGAGTCAAGCA-GCTGGGATATTCATTCGAGGCATATAATTTTC-T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5031177 123 - 111193037 TTGGGTCTCTTTAAATATGAATAGGTTACAGATTGCCTTTTTAAATATTGCTTGAGAT-CAAGTGGTGGTGGTTATATATGGAGTCAAGCA-GCTGGGATATTCATTCGAGGCATATAATTTTC-T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3424147 123 + 3644372 TTGGGTCTCTTTAAATATGAATAGGTTACAGATTGCCTTTTTAAATATTGCTTGAGAT-CAAGTGGTGGTGGTTATATATGGAGTCAAGCA-GCTGGGATATTCATTCGAGGCATATAATTTTC-T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3379587 123 - 10304083 TTGGGTCTCTTTAAATATGAATAGGTTACAGATTGCCTTTTTAAATACTGCTTGAGAT-CAAGTGGTGGTGGTTATATATGGAGTCAAGCA-GCTGGGATATTCATTCGAGGCATATAATTTTC-T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3468454 124 - 107702431 GTGGGTCTCTTTAAATATGAATAGGTTACAGATTGCCTTTTTAAATATTGCTTGAGATGAAAGTGGTGGTGGTTATATATGGAGTCAAGCA-GCTGGGATATTCATTCGAGGCATGTAATTTTC-T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1012384 123 + 1565135 TTGGGTCTCTTTAAATATGAATAGGTTACAGATTGCCTTTTTAAATACTGCTTGAGAT-CAAGTGGTGGTGGTTATATATGGAGTCAAGCA-GCTGGGATATTCATTCGAGGCATATAATTTTC-T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376800 123 - 13651311 TTGGGTCTCTTTAAATATGAATAGGTTACAGATTGCCTTTTTAAATATTGCTTGAGAT-CAAGTGGTGGTGGTTATATATGGAGTCAAGCA-GCTGGGATATTCATTCGAGGCATATAATTTTC-T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3464518 123 - 108792865 TTGGGTCTCTTTAAATATGAATAGGTTACAAATTGCCTTTTTAAATATTGCTTGAGAT-CAAGCGGTAGTGGTTATATATGAAGTCAAGCA-GCTGGGATATTCATTCAAGGCATATAATTTTC-T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112763 123 - 7082604 TTGGGTCTCTTTAAATATGAATAGGTTACAAATTGCCTCTTTAAATATTGCTTGAGAT-CAAGTGGTAGCGGTTATATATGAAGTCAAGCA-GCTGGCATATTCATTCAAGGCATATAATTTTC-T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 598564 123 + 5243153 TTGGGTCTCTTTAAATATGAATAGGTTACAAATTGCCTTTTTAAATATTGCTTGAGAT-CAAGCGGCAGCGGTTATATATGAAGTCAGGCA-GCTGGGATATTCATTCAAGGCATGTAATTTTC-T i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1934899 123 - 1938448 TTGGGTCTCTTTAAATATGAATAGGTTACAAATTGCCTTTTTAAATATTGCTTGAGAT-CAAGTGGTAGCAGTTATATATGAAGTCAAGCA-GCTGGGATGTTCGTTCAAGGCATATAATTTTC-T i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2653711 122 - 159902609 TTGGGTCTCTTTAACTGTGAATAGGTTACAAATTGCTTTTCTAAATAGGATTTGAGAT-CAAACGGTATTGGTTATAAATGGAGTCAGACA-GCTGGGATATTCATTCAAGGCCTATAATTTTC-- i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 965011 123 + 1238772 TTGGGTCTCTTTAAATATGAATAGGTTACAAATTGCTTTTTTAAATAGGGTTTGAGAT-CAAGCGGTATTGGTTATAAATGGAGTCAGACA-GCTGGGATATTCATTCAAGGCATACAATTTTCT- i proCoq1.NW_012151163v1 C 0 I 1345 s otoGar3.GL873658 2543187 120 + 5252280 TTGGGTCTCTTTAAATATGAATAGG-TACAAATTGCTCTTTTAAATACAATCTGAGAT-CAAGCAGTATTGGTTATAAATGGAGTCAGGCA-GCTGGAATATTCATTCAAGGC-TATAATTTTC-- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91419104 86 - 120129022 --GGGTC------------------------ATGGCCTGTGTAAATATTG-TGGCAAG-CAAGTGGTAGGGGCTGTATACAGAGTCAAGCAGGGTGCCAAAGTCACTCCAGACA------------ i mm10.chr12 C 0 C 0 e canFam3.chr17 2047157 73 + 64289059 I e dasNov3.JH580157 575535 453 + 2232271 I a score=514133.000000 s hg38.chr2_KI270769v1_alt 60626 44 + 120616 TCATT--CTTTGGACAAAACACAAGCAGGTTTTTAATTTTGAATAA s panTro5.chr2A 3522579 44 + 111504155 TCATT--CTTTGGACAAAACACAAGCAGGTTTTTAATTTTGAATAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3383368 44 + 114371477 TCATT--CTTTGGACAAAACACAAGCAGGTTTTTAATTTTGAATAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 261117 44 + 637652 TCATT--CTTTGGACAAAACACAAGCAGGTTTTTAATTTTGAATAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3057458 44 + 81552678 TCATT--CTTGGGACAAAACACAAGCAGGTTTTTAATTTTGAATAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3320162 44 + 108979918 TCATT--CTTGGGACAAAACACAAGCAGGTTTTTAATTTTGAATAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5031300 44 - 111193037 TCATT--CTTGGGACAAAACACAAGCAGGTTTTTAATTTTGAATAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3424270 44 + 3644372 TCATT--CTTGGGACAAAACACAAGCAGGTTTTTAATTTTGAATAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3379710 44 - 10304083 TCATT--CTTGGGACAAAACACAAGCAGGTTTTTAATTTTGAATAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3468578 44 - 107702431 TCATT--CTTGGGACAAAACACAAGCAGGTTTTTAATTTTGAGTAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1012507 44 + 1565135 TCATT--CTTGGGACAAAACACAAGCAGGTTTTTAATTTTGAATAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376923 44 - 13651311 TCGTT--CTTGGGACAAAACACAAGCAGGTTTTTAATTTTGAATAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3464641 44 - 108792865 TCACT--CTTTGGACAAAACACCAGCAGGTTTTTAACTTTGAATAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112886 44 - 7082604 TCACT--CTTTGGACAGAACACAAGCAGGTTTTTAACTCTGAATAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 598687 44 + 5243153 TCACT--CTTTGGACAAAACACAAGCAGGTTTTTAACTCTGAATAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1935022 44 - 1938448 TCACT--CCTTGGACAAAACACAAGCAGGTTTTGAACTCTGAATAA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2653833 40 - 159902609 ----T--CTTTGGGCAAAACACAACCAGGTTTTCTATTTTGAATAA i micMur3.chr8 C 0 I 974 s otoGar3.GL873658 2543307 39 + 5252280 ----T--CTTTGGGC-AAACACCACCAGGTTTTCTATTTTGAATAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91419190 21 - 120129022 TCGTTCCCCTTGGAC---ACATAG---------------------- i mm10.chr12 C 0 C 0 e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 575535 453 + 2232271 I a score=1211774.000000 s hg38.chr2_KI270769v1_alt 60670 125 + 120616 TTGATCTTCCCTCCCATACTGTGGGCAGGTGTTGATGGTTCCCCACCTTGTTAGCCTGAAGCCTGTTCATCCCTGGACCGGCCATGACATGCCCAGTGC------------AGTATCCCCCACGGTGGGGCTGGCAG s panTro5.chr2A 3522623 125 + 111504155 TTGATCTTCCCTCCCATACTGTGGGCAGGTGTTGATGGTTCCCCACCTTGTTAGCCTGAAACCTGTTCATCCCTGGACCGGCCATGACATGCCCAGTGC------------AGTATCCCCCACAGTGGGGCTGGCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3383412 125 + 114371477 TTGATCTTCCCTCCCATACTGTGGGCAGGTGTTGATGGTTCCCCACCTTGTTAGCCTGAAGCCTGTTCATCCCTGGACCGGCCATGACATGCCCAGTGC------------AGTATCCCCCACAGTGGGGCTGGCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 261161 125 + 637652 TTGATCTTCCCTCCCATACTGTGGGCAGGTGTTGATGGTTCCCCACCTTGTTAGCCTGAAGCCTGTTCATCCCTGGACTGGCCATGACATGCCCAGTGC------------AGTATCCCCCACGGTGGGGCTGGCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3057502 125 + 81552678 TTGATCTTCCCTCCTCTACTGTGGGCAGGTGTTGATGGTTCCCCACCTTGTTAGCCTGAAGCCTGTTCATCCCTGGACTGGCCATGACATGCCCAGTGC------------AGTATCCCCCATGGTGGGGCTGGCAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3320206 125 + 108979918 TTGGTCTTCCCTCCCATACCGTGGGCAGGTGTTGATGGTTCCCCACCTTGTTAGCCTGAAGCCTGTTCATCCCTGGACCGGCCACGACATGCCCAGAGC------------AGTATCCCCCATAGAGGGGCTGGCAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5031344 125 - 111193037 TTGGTCTTCCCTCCCATACCGTGGGCAGGTGTTGATGGTTCCCCACCTTGTTAGCCTGAAGCCTGTTCATCCCTGGACCGGCCACGACATGCCCAGAGC------------AGTATCCCCCATAGAGGGGCTGGCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3424314 125 + 3644372 TTGGTCTTCCCTCCCGTACCGTGGGCAGGTGTTGATGGTTCCCCACCTTGTTAGCCTGAAGCCTGTTCATCCCTGGACCGGCCACGACATGCCCAGAGC------------AGTATCCCCCATAGAGGGGCTGGCAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3379754 125 - 10304083 TTGGTCTTCCCTCCCGTACCGTGGGCAGGTGTTGATGGTTCCCCACCTTGTTAGCCTGAAGCCTGTTCATCCCTGGACCGGCCACGACATGCCCAGAGC------------AGTATCCCCCATAGTGGGGCTGGCAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3468622 125 - 107702431 TTGGTCTTCCCTCCCGTACCGTGGGCAGGTGTTGATGGTTCCCCACCTTGTTAGCCTGAAGCCTGTTCATCCCTGGACCGGCCATGACATGCCCAGAGC------------AGTATCCCCCGTGGTGGGGCTGGCAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1012551 125 + 1565135 TTGGTCTTCCCTCCCGTACCGTGGGCAGGTGTTGATGGTTCCCCACCTTGTTAGCCTGAAGCCTGTTCATCCCTGGACCGCCCACGACATGCCCAGAGC------------AGTATCCCCCGTGGTGGGGCTGGCAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3376967 125 - 13651311 TTGGTCTTCCCTCCCGTACCGTGGGCAGGTGTTGATGGTTCCCCACCTTGTTAGCCTGAAGCCTGTTCATCCCTGGACCGGCCACGACATGCCCAGTGC------------AGTACCCCCCATGGTGGGGCTGGCAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3464685 124 - 108792865 TTGATCTTCCCTCCTGTACTG-TGGTGGATGTTGATGTTTGTCCACCTTGTTAGCCTGAAACCTGTTCCTCCCTGGACTGGCCACGCCATGCCCAGTGC------------AGTATCCCCCATGATGGGATTGGCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3112930 125 - 7082604 TTGATCTTCCCTCCTGTACTGAGGGGGGGTGTTGATGATTGCCCACCTCGTTAGCCTGAAACCTTTTCAGCCCTGGACCAGCCACGCCATGCCCGGTGT------------GGTATCCCCCATGGTGGGGCTGGCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 598731 125 + 5243153 CTGATCTTCCCTCCTGTACTGCGGGTGGATGTTGATGGTTGCCCACCTTGTTAGCCTGAAACCTCTTTATCCCTGGACCGACCACGCCATGCCCAGTGC------------GGTATCCCCCATGGTGGGGCTGGCTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1935066 125 - 1938448 TTGATCTTCCCTCCTGTACTGTGGGTGGATGTTGATGGTTGCCCACCTTGTTAGCCTGAAACCTGTTCATCCCTGGACCGGCCACGCCATGCCCGGTGT------------GGTATCCCCCATGGTGGGGCTGGCTG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2543346 61 + 5252280 --------------CACATCG-gggcag---------------------------------------cacctgtggctcgggtagggca---ctgg-------------------ccccatataccgagggtggcag i otoGar3.GL873658 C 0 I 357 s mm10.chr12 91419211 121 - 120129022 --------CCTTCCCGTGCTGTGGGTGTGTAGTGAGAATTACCCACATTTTAGGAGTGCAGGCTGGT-ATTCCAATCCAATCTAGTCTGTGCCCAGGGCTTGGGGTCCAGAAGAGCCCTCTGCTTTAGGG------- i mm10.chr12 C 0 C 0 e micMur3.chr8 2653873 974 - 159902609 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 575535 453 + 2232271 I a score=1703139.000000 s hg38.chr2_KI270769v1_alt 60795 183 + 120616 CAG-CCCCTCCACAC--------------TATGCACAGAGCAGT-CTGAGTCTGGAATCGTCTCTT-CAGCCTTACAGCTGTTCCATCTGTTATTTTCTCCAAACTCCTCTTCCCTGCATTTCCAAGCAGCGTCTTCTCATGATTACAGTCACTTTCAGAGATGAGCTCATGCT--GAT---ACCC---AATGAAGAACCCAGTTCAG s panTro5.chr2A 3522748 183 + 111504155 CAG-CCCCTCCACAC--------------TATGCACAGAGCAGT-CTGAGTCTGGAATCGTCTCTT-CAGCCCTACAGCTGTTCCATCTGTTATTTTCTCCAAACTCCTCTTCCATGCATTTCCAAGCAGCGTCTTCTCATGATTACAGTCGCTTTCAGAGATGAGCTCATGCT--GAT---ACCC---AGTGAAGAACCCAGTTCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3383537 183 + 114371477 CAG-CCCCTCCACAC--------------TATGCACAGAGCAGT-CTGAGTCTGGAATCGTCTCTT-CAGCCCTACAGCTGTTCCATCTGTTATTTTCTCCAAACTCCTCTTCCATGCATTTCCAAGCAGCGTCTTCTCATGATTACAGTCGCTTTCAGAGATGAGCTCATGCT--GAT---ACCC---AGTGAAGAACCCAGTTCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 261286 183 + 637652 CAG-CCCCTCCACAC--------------TATGCACAGAGCAGT-CCGAGTCTGGAATCATCTCTT-CAGCCCTACAGCTGTTCCATCTGTTATTTTCTCCAAACTCCTCTTCCATGCATTTCCAAGCAGCGTCTTCTCATGATTACAGTCGCTTTCAGAGATGAGCTCATGCT--GAT---ACCC---AATGAAGAACCCAGTTCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3057627 183 + 81552678 CAGCCCCCTCCACAC--------------TATGCACAGAGCAGT-CCGAGTCGGGAATCGTCTCTT-CAGCCCCACAGCTGTTCCATCGGTTATTTTCTGCAGACTCCTCTTCCATGCATTTCCAAGCAGCGTTTTCTCATGATTACAGTCGCTTTCAGAGATGAGCTCATGCT--GAT---A-CC---AATGAAGAACCCAGTTCAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3320331 181 + 108979918 CAG-CCCCTCCACAC----------------TGCACAGAACAGT-CCGAGTCTAGAATCGTCTC---CAGCCACACAGCTGTTTGATGTGTTATTTTCTCCGAACTCCTCTTCCACGCATTTCCAAGCAGCATCTTCTCATGATTACAGTTGCTTTCAGAGATGAGCTCATGCTAAGAT---ACCC---AATGAAGAACCCAGTTCAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5031469 181 - 111193037 CAG-CCCCTCCACAC----------------TGCACAGAACAGT-CCGAGTCTAGAATCGTCTC---CAGCCACACAGCTGTTTGATGTGTTATTTTCTCCGAACTCCTCTTCCACGCATTTCCAAGCAGCATCTTCTCATGATTACAGTTGCTTTCAGAGATGAGCTCATGCTAAGAT---ACCC---AATGAAGAACCCAGTTCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3424439 181 + 3644372 CAG-CCCCTCCACAC----------------TGCACAGAACAGT-CCGAGTCTAGAATCGTCTC---CAGCCACACAGCTGTTTGATGTGTTATTTTCTCCGAACTCCTCTTCCACGCATTTCCAAGCAGCATCTTCTCATGATTACAGTTGCTTTCAGAGATGAGCTCATGCTAAGAT---ACCC---AATGAAGAACCCAGTTCAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3379879 183 - 10304083 CAG-CCCCTCCACAC--------------TATGCACAGAACAGT-CCGAGTCTAGAATCGTCTC---CAGCCACACAGCTGTTTGATGTGTTATTTTCTCCGAACTCCTCTTCCACGCATTTCCAAGCAGCATCTTCTCATGATTACAGTCGCTTTCAGAGATGAGCTCATGCTAAGAT---ACCC---AATGAAGAACCCAGTTCAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3468747 181 - 107702431 CAG-CCCCTCCACAC----------------TGCACAGAACAGT-CCGAGTCTAGAATCGTCTC---CAGCCACACAGCTGTTTAATGTGTTATTTTCTCCAAACTCCTCTTCCATGCATTTCCAAGCAGCGTCTTCTCGTGATTACAGTCGCTTTCAGAGATGAGCTCATGCTAAGAT---ACCC---AATGAAGAACCCAGTTCAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1012676 183 + 1565135 CAG-CCCCTCCACAC--------------TATGCACAGAACAGT-CCGAGTCTAGAATCGTCTC---CAGCCACACAGCTGTTTGATGTGTTATTTTCTCCGAACTCCTCTTCCACGCATTTCCAAGCAGCATCTTCTCATGATTACAGTCGCTTTCAGAGATGAGCTCATGCTAAGAT---ACCC---AATGAAGAACCCAGTTCAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3377092 182 - 13651311 CAG-CCCCTCCACAC----------------TGCACAGAACAGT-CCGAGTCTGGAATCGTCTCTT-CAGCCGCACAGCTG-TTGATGTGTTATTTTCTCCAAACTCCTCTTCCATGCATTTCCAAGCAGCATCTTCTCATGATTACAGTTGCTTTCAGAGATGAGCTCATGCTAAGAT---ACCC---AATGAAGAACCCAATTCAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3464809 198 - 108792865 CAG-CCCCTCCACACCAAACAGACCCCTCTGTGGACAGCACAGT-CCGAGTCTGG-GTGGTCTCTT-CAGCCCCACAGCTGTTCCTTCTGTTACTGTCTCCAAACTCCTCTTCCATGCATTTCCAAGCTGTGTCTTCACACGGTTACAGTCACTTTCAGAGACGAGCTCATGCTAAGAC---GCCC---ACTGAAGAACCCAGTTCAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3113055 195 - 7082604 CAG-CCCCTCCACACCAAACAGACCCCTCTGTGAACAGAACAGT--CGAGTCTGG---AGTCTCTT-CAGCCCCACAGCTGTTCCTTCTGTTACTTTCTCCAGACTCCTCTTCCATGCATTTCCAAGCGGCGTCTTCACATGATTACAGTCGCTTTCAGAGATGAGCTCGTGCTAAGAT---GCCC---AATGAAGAACCCTGATCAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 598856 202 + 5243153 CAG-CCCCTCCACGCCAAACAGACCCCTCTGTGAACATAACAGT-CCGAGTCTGGAGTTGCCTCTT-CAGCCCCACAGCTGTTCCTTCTGTTACTTTCTCCAAACTCCTCTTCCATGAATTTCCAAGCGGCACCTTCGCATGATTACAGTCGCTTTCAGAGATGAGCTCATGCTAAGACGTAGCCC---GATGAAGAACCCAGTTCAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1935191 199 - 1938448 CAG-CCCCTCCACACCAAACAGACCCCTCTGTGAACAGAACAGT-CTGAGTCTGGAGTCGTCTCTT-CAGCCCCACAGCTGTTCCTTCTGTTACTTTCTCCAAACTCCACTTCCATGCATTTCCAAGCGGCATCTTCTCATGATTACGGTCGCTTTCAGAGATGAGCTCATGCTAAGAT---GCCC---AATGAAGAACCCAGTTCAG i aotNan1.NW_018507213v1 C 0 C 0 s mm10.chr12 91419332 176 - 120129022 -AG-CCTC------C--------------TTGGCATAGGTAAGTGTCGCGTCAGGAGCCCTCTCTTCCAGCCCCAC-GCTTCACCTTCAGTG--TTTCTTCCCACGGCCTGCCCACTCAGTTCCAAGTA-CCTCTCTCCATGACTGAACTTGATCACGGCGGTGAGCTCG---TAAGAC---ACCCAATAATAAAGAATGCATTTCAG i mm10.chr12 C 0 I 2295 e micMur3.chr8 2653873 974 - 159902609 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 575535 453 + 2232271 I e otoGar3.GL873658 2543407 357 + 5252280 I a score=148425.000000 s hg38.chr2_KI270769v1_alt 60978 31 + 120616 AAttttc--tttttttttcttttttgttttttt------ s panTro5.chr2A 3522931 31 + 111504155 AAttttc--tttttttttcttttttgttttttt------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3383720 31 + 114371477 AAttttc--tttttttttcttttttgttttttt------ i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 261469 29 + 637652 AAttttc---ttttttttcttttttg-tttttt------ i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3057810 28 + 81552678 AAttttc--tttttttttcttttt---tttttt------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3320512 24 + 108979918 AAttttc--c-tttttttttt------tttttt------ i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5031650 22 - 111193037 AAttttc--c---tttttttt------tttttt------ i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3424620 22 + 3644372 AAttttc--c---tttttttt------tttttt------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3380062 22 - 10304083 AAttttc--c---tttttttt------tttttt------ i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3468928 27 - 107702431 AAttttctttttttttttttt------tttttt------ i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1012859 25 + 1565135 AAttttc--cttttttttttt------tttttt------ i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3377274 25 - 13651311 AAttttc--tttttttttttt------tttttt------ i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3465007 25 - 108792865 AAttttt--tttttttctttt------ttttct------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3113250 31 - 7082604 AAttttt--ttcttttttttt------tttttttttttt i saiBol1.JH378218 C 0 M 100 s cebCap1.NW_016107454v1 599058 29 + 5243153 AAttttt--ttttcttttttt------ttttttttct-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1935390 25 - 1938448 AAttttt--ttttcctttttt------tttttt------ i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 575535 453 + 2232271 I e otoGar3.GL873658 2543407 357 + 5252280 I a score=223495.000000 s hg38.chr2_KI270769v1_alt 61009 26 + 120616 gagacagggggtcttattctgtcacc s panTro5.chr2A 3522962 26 + 111504155 gagacaggcggtcttattctgtcacc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3383751 26 + 114371477 gagacaggcggtcttattctgtcacc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 261498 26 + 637652 gagacaggaggtcttattctgtcacc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3057838 26 + 81552678 gagacagggggtcttgttctgtcacc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3320536 26 + 108979918 gagacagggggtcttgttctgtcacc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5031672 26 - 111193037 gagacagggggtcttgttctgtcacc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3424642 26 + 3644372 gagacagggggtcttgttctgtcacc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3380084 26 - 10304083 gagacagggggtcttgttctgtcacc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3468955 26 - 107702431 gagacagagggtcttgttctgtcact i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1012884 26 + 1565135 gagacagggggtcttgttctgtcacc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3377299 26 - 13651311 gagacagggggtcttgttctgtcacc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3465032 24 - 108792865 gagacag--ggtcttgttctgtcacc i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 599087 24 + 5243153 gagacag--ggtcttgttctgtcacc i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1935415 24 - 1938448 gagacag--ggtcttgttctgtcacc i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e saiBol1.JH378218 3113281 100 - 7082604 M e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 575535 453 + 2232271 I e otoGar3.GL873658 2543407 357 + 5252280 I a score=2102689.000000 s hg38.chr2_KI270769v1_alt 61035 200 + 120616 cagactggagtacagtggcatgaacgtggctcactgcagccttga---cctccccggttcaagcaattcttctgcctcgccctcctgagtagctgggactacaggcatgcaccaccaagcctggctaatttttaaactttttgtagagatagggtctcactctgttgcccaggctggtcttgaactcctggactcaagcagtt s panTro5.chr2A 3522988 200 + 111504155 cagactggagtacagtggcatgaacgtggctcactgcagccttga---cctccccggttcaagcaattcttctgcctcgccctcctgagtagctgggactacaggcatgcaccaccaagcctggctaatttttaaactttttgtagagatagggtctcactatgttgcccaggctggtcttgaactcctggactcaagcagtt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3383777 200 + 114371477 cagactggagtacagtggcatgaacgtggctcactgcagccttga---cctccccggttcaagcaattcttctgcctcgccctcctgagtagctgggactacaggcatgcagcaccaagcctggctaatttttaaactttttgtagagatagggtctcactatgttgcccaggctggtcttgaactcctggactcaagcagtt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 261524 200 + 637652 cagactggagtacagtggcatgaacgtggctcactgcagccttga---cctccccggttcaagcaattcttctgcctcgccctcctgtgtagctgggactacaggcatgcaccaccaagcctggctaatttttaaactttttgtagagatagggtctcactatgttgcccagactggtcttgaactcctggactcaagcagtt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3057864 200 + 81552678 cagactggagtacagtggcatgaacgtggctcactgcagccttga---cctccccggttcaagcaattcttctgcctcgccctcctgagtagcggggactacaggcatgtgccaccatgcctggctaatttttaaactttttgtagagatagggtctcactatgttgcacaggctggtcttgaactcctggactcaagcagtt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3320562 200 + 108979918 cagactggagtacagtggcacgaacatggctcactgcagccttga---cctccctggttcaagcaattcttctgccttgccctcctgagtagctgggactacaggcatgcaccaccttgcctggctaatttttaaactttttgtagagatagggtctcactacgttgcccagcctggtcttgaactcctggactcaagcagtt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5031698 200 - 111193037 cagactggagtacagtggcacgaacatggctcactgcagccttga---cctccctggttcaagcaattcttctgccttgccctcctgagtagctgggactacaggcatgcaccaccttgcctggctaatttttaaactttttgtagagatagggtctcactacgttgcccagcctggtcttgaactcctggactcaagcagtt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3424668 200 + 3644372 cagactggagtacagtggcatgaacatggctcactgcagccttga---cctccctggttcgagcaattcttctgccttgccctcctgagtagctgggactacaggcatgcaccaccttgcctggctaatttttaaactttttgtagagatagggtctcactacgttgcccagcctggtcttgaactcctggactcaagcagtt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3380110 200 - 10304083 cagactggagtacagtggcatgaacatggctcactgcagccttga---cctccctggttcaagcaattcttctgccttgccctcctgagtagctgggactacaggcatgcaccaccttgcctggctaatttttaaactttttgtagagatagggtctcactatgttgcccagcctggtcttgaactcctggactcaagcagtt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3468981 203 - 107702431 cagactggagtacagtggcgtgaacatggctcactgcagccttgacctcctccctggttcaagcaattcttctgccttgccctcctgagtagctgggactacaggcgtgcaccaccatgcctggctaatttttaaactttttgtagagatagggtctcactatgttgcccaggctggtcttgaactcctggactcaagcagtt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1012910 200 + 1565135 cagactggagtacagtggcatgaacatggctcactgcagccttga---cctccctggttcaagcaattcttctaccttgccctcctgagtagctgggactacaggcatgcaccaccttgcctggctaatttttaaactttttgtagagatagggtctcactatgttgcccagcctggtcttgaactcctggacccaagcagtt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3377325 200 - 13651311 cagactggagtacagtggcgtgaacatggctcactgcagccttga---cctccctggttcaagcaattcttctgccttgccctcctaagtagctgggactacaggcatgcaccaccatgcctggctaatttttaaactgtttgtagagatagggtctcactatgttgctcaggctggtcttgaactcctggactcaagcagtt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3465056 200 - 108792865 cagactggagtacagtggcatgaacatggcttactgcagccgtga---cctcccaagttcaagcaatttttctgccttgccctcctgagtagctgggactacaggcatgtgccaccatgcctggctaatttttaaactttttgtagagatgggatatcactatgttgcccaggctggtcttgaactcctcgactcaagcagtt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3113383 200 - 7082604 cagactggagtaccgtggcatgaacatggcttactgcagccgtga---cctccccagtttgagcaattcttctgccttgccctcctgagtagctgggactacaggcttgtgccaccatgcctggctaatttttaaactttttgtagagatgggatctcactatgttgcctaggctggtcttgaactcctggactcaagcagtt i saiBol1.JH378218 M 100 C 0 s cebCap1.NW_016107454v1 599111 200 + 5243153 cagactggagtccagtggcatgaacatggcttactacagctgtga---cctccccagttcgagcaattcttctgccttgccctcctgagtagctgggactacaggcatgtgccaccatgcctggctaatttttaaactttttgtagagatgggatctcactgtgttgcccaggctggtcttgaactcctggactcaagcagtt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1935439 200 - 1938448 cagactggagtatagtggcatgaacatggcttactgcagccgtga---cctccccagttcaagcaattcttctgccttgccctcctgagtagctgggactacaggcatgtgccaccatgcctggctaatttttaaactttttgtagagatgggatctcactatgttgcccaggctggtcctgaactcctggactcaagcagtt i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 575535 453 + 2232271 I e otoGar3.GL873658 2543407 357 + 5252280 I a score=497430.000000 s hg38.chr2_KI270769v1_alt 61235 50 + 120616 ctcccacct-cagcttcccaaagtgctacagctgactataagcgtgagcca s panTro5.chr2A 3523188 50 + 111504155 ctcccacct-cagcttcccaaagtgctacagctgactataagcgtgagcca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3383977 50 + 114371477 ctcccacct-cagcttcccaaagtgctacagctgactataagcgtgagcca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 261724 50 + 637652 ctcccatct-cagcttcccaaagtgctacaactgactataagcgtgagcca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3058064 50 + 81552678 ctcccacct-cagcttcccaaagtgctacaactgactataagcgtgagcca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3320762 50 + 108979918 ctcccacct-cagcttcccaaagtgctacgactgactataagcgtgagcca i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5031898 50 - 111193037 ctcccacct-cagcttcccaaagtgctacgactgactataagcgtgagcca i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3424868 50 + 3644372 ctcccacct-cagcttcccaaagtgctacgactgactataagcgtgagcca i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3380310 50 - 10304083 ctcccacct-cagcttgccaaagtgctacgactgactataagcgtgagcca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3469184 50 - 107702431 ctcccacct-cagcttcccaaagtgctacgactgactataagcgtgagcca i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1013110 50 + 1565135 ctcccacct-cagcttcccaaagtgctacgactgactataagcgtgagcca i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3377525 50 - 13651311 ctcccacct-cagcttcccaaagtgctacgactgactataagcctgagcca i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3465256 42 - 108792865 ctcccacct---------caaaatgttagaactgactataggcatgaccca i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3113583 50 - 7082604 ctcccacct-cagcttcccaaaatgctagaactgactataggcgtgacgca i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 599311 50 + 5243153 ctcccacct-cagcttcccaaaatgctagaactgactataggcgtgaccca i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1935639 50 - 1938448 ctcccacct-cagcttcccgaaatgctagaactgactataggcgtgaccca i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2543764 48 + 5252280 TTTCCACCTGCGTCCTCTCAGGAT--TGCAGCTGTCT-TCAGAGAGGGCCA i otoGar3.GL873658 I 357 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 575535 453 + 2232271 I a score=1258276.000000 s hg38.chr2_KI270769v1_alt 61285 171 + 120616 ccat----------------gtccagcc-------CAGAATTTTCAAATTAAACAAAACTAACCCT-----------------------------------------------------------------------------------------------------------------------------------------CCAACATGTTTCAGTACAGTGGCCTCAATACACTATTCCTCATGCAAAGCCTTCAGTTGAAAGTGCTGGGTAACTTGGATTTGC-CTGtgtgttgaccatcagttgctgcctaacagattatctgcagc------ s panTro5.chr2A 3523238 171 + 111504155 ccat----------------gtccagcc-------CAGAATTTTCAAATTAAACAAAACTAACCCT-----------------------------------------------------------------------------------------------------------------------------------------CCAACATGGTTCAGTACAGTGGCCTCAATACACTATTCCTCATGCAAAGCCTTCAGTTGAAAGTGCTGGGTAACTTGGATTTGC-CTGtgtgttgaccatcagttgctgcctaacagattatctgcagc------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384027 171 + 114371477 ccat----------------gtccagcc-------CAGAATTTTCAAATTAAACAAAACTAACCCT-----------------------------------------------------------------------------------------------------------------------------------------CCAACATGGTTCAGTACAGTGGCCTCAATACACTATTCCTCATGCAAAGCCTTCAGTTGAAAGTGCTGGGTAACTTGGATTTGC-CTGtgtgttgaccatcagttgctgcctaacagattatctgcagc------ i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 261774 171 + 637652 ccat----------------gtccagcc-------CAGAATTTTCAAATTAAAGAAAACTAACCCT-----------------------------------------------------------------------------------------------------------------------------------------CCACCATGTTTCAGTACAGTGGCCTCAATACACTATTCCTCATGCAAAGCCTTCAGTTGAAAGTGCTGGGTAAGTTGGATTTGC-CTGtgtgttacccatcagttgctgcctaacagattatctgcgac------ i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3058114 170 + 81552678 ccat----------------gtccagcc-------CAGAATTTTCAAA-TAAACCAAACTAAACCT-----------------------------------------------------------------------------------------------------------------------------------------CCAACATGTTTCAGTACAGTGGCCTCAATACACTATTCCTCGTGCAAAGCCTTCAGTTAAAAGTGCTGGGTAACTTCGATTTAC-CTGtgtgttgaccatcagttgctgcctaacagatgatctgcaac------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3320812 242 + 108979918 ccat----------------gtccggcc-------TAGAATTTTCAAATT----AAAGCTAAACCT---------------------------------CCA----------------------------GCATGTTTCAGTAGAATGGCCTCAATGCGCTATTCCTCAGCTTAGAATTTTCAAATTAAACAAAGCTAAACCTCCAGTGTGTTTCAGTAGAATGGCCTCAATGCACTATTCCCCA-GCAAAGCCTTCAGTTAAAGGTACGGGGTAACGTCGACTGAC-CTGtgtgttagccatcagttgctgcctaacagattatctgcaac------ i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5031948 242 - 111193037 ccat----------------gtccggcc-------TAGAATTTTCAAATT----AAAGCTAAACCTCCAGCATGTTTCAGTAGAATGGCCTCAATGCGCT-------------------------------------------------------------ATTCCTCAGCTTAGAATTTTCAAATTAAACAAAGCTAAACCTCCAGTGTGTTTCAGTAGAATGGCCTCAATGCACTATTCCCCA-GCAAAGCCTTCAGTTAAAGGTACGGGGTAACGTCGACTGAC-CTGtgtgttagccatcagttgctgcctaacagattatctgcaac------ i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3424918 242 + 3644372 ccat----------------gtccggcc-------TAGAATTTTCAAATT----AAAGCTAAACCT---------------------------------CCAGCATGTTTCAGTAGAATGGCCTCAATGCGC----------------------------TATTCCTCAGCTTAGAATTTTCAAATTAAACAAAGCTAAACCTCCAGTGTGTTTCAGTAGAATGGTCTCAATGCACTATTCCCCA-GCAAAGCCTTCAGTTAAAGGTACGGGGTAACGTCGACTGAC-CTGtgtgttagccatcagttgctgcctaacagattatctgcaac------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3380360 166 - 10304083 ccat----------------gtccagcc-------TAGAATTTTCAAATT----AAAGCTAAACCT-----------------------------------------------------------------------------------------------------------------------------------------CCAGCGTGTTTCAGTAGAATGGCCTCAATGCGCTATTCCCCA-GCAAAGGCTTTAGTTAAAGGTGTGGGGTAACGTCGACTGAC-CTGtgtgttagccatcagttgctgcctaacagattatctgcaac------ i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3469234 170 - 107702431 ccat----------------gtccagcc-------TAGAATTTTCAAATTAAACAAAGCTAAACCT-----------------------------------------------------------------------------------------------------------------------------------------CCAGCGTGTTTCAGTAGAATGGCCTCAATGCACTATTCCCCA-GCAAAGGCTTCAGTTAAAGGTGCGGGGTAACGTCCACTGAC-CTGtgtgttagccatcagttgctgcctaacagattatctgcaac------ i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1013160 166 + 1565135 ccat----------------gtccagcc-------TAGAATTTTCAAATT----AAAGCTAAACCT-----------------------------------------------------------------------------------------------------------------------------------------CCAGCGTGTTTCAGTAGAATGGCCTCAATGCGCTATTCCCCA-GCAAAGGCTTCAGTTAAAGGTGCAGGGTAACGTCGACTGAC-CTGtgtgttagccatcagatgctgcctaacagattatctgcaac------ i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3377575 173 - 13651311 ccat----------------gtccAAATTTTCAAATTAAATTTTCAAATT----AAAGCTAAACCT-----------------------------------------------------------------------------------------------------------------------------------------CCAGCGTGTTTCAGTAGAATGGCCTCAATGCACTACTCCCCA-GCAAAGGCTTCAGTTAAAGGTGCGGGGTGACGTCGACTGAC-CTGtgtgttagccatcagttgctgcctaacagattatctgcaac------ i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3465298 162 - 108792865 ctat----------------gtctagcc-------CAGAATTTTCAAATTAAACAAAACTAAACCT-----------------------------------------------------------------------------------------------------------------------------------------CCCAAGTATGTCAGTACATTGCTCTCAATACACTGTTCCTCATGCAAAGCCTTAAA-GGAAGGTGCTGGGGAACTTGGCTGTGC-CTGCGTGTTCACCGTCAGTTGATATGCATCGGACGA-------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3113633 169 - 7082604 ccat----------------gtccagcA-------CAGAATTTTCAAAGTAAACAAAACTAAACCT-----------------------------------------------------------------------------------------------------------------------------------------CCCGAGCGTTTCAGTACATGGGTCTCAATACACTGTTCCTCATGCAAAGCCTTGAA-GGAAGGTACT-GGTAACTTCGCTGTGC-CCGTGTGTTCGCCATCAGTTGATCTGCAGCAAATGATCTGCAGC------ i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 599361 170 + 5243153 tcat----------------gtccagcc-------CAGAATTTTCAAATTAAACAAAACTAAACTT-----------------------------------------------------------------------------------------------------------------------------------------CCTGAGTGTTTCAGTACATTGGTCTCAATACACTGTTCCTCATGCAAAGCCCTGAA-GGAAGGTGCGGGGTAACTTCGCTGTGC-CTGTGTGTTCGCCATCAGTTGATCTGCAGCAGATGATCTGTAGC------ i cebCap1.NW_016107454v1 C 0 I 21 s aotNan1.NW_018507213v1 1935689 170 - 1938448 ccac----------------gtccagcc-------CAGAATTTTCAAATTAAACAAAACTAAACCT-----------------------------------------------------------------------------------------------------------------------------------------CCTGCGTGTTTCAGTACATTGGTCTCAATACACTGTTCCTCATGTAAAGCCTTAAA-GGAAGGTGCTGGGTGACTTCGCTGTGC-CTGTGTGTTCGCCATCGGTTGATCTGCATCAGACGATCTGCAGC------ i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2543812 167 + 5252280 TTCTAGGGCAACAGTGAGGAGCCCACTT-------CAGAATGTGCAAATTAAACACAAGTAAACCT-----------------------------------------------------------------------------------------------------------------------------------------CTAAAGTGACTGAATGCCTCGACCTCAGTGCACTGTTTCTCATGGGAAGCCTTGGA-TAAAAGTGCTGGGTGACTTTGACTCAC-CTGTGTATTagttatccatcaaggc------------------------- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 575988 156 + 2232271 ----------------------CCATTT-------CCAAATTTCCAAGTT----AAAGCTAAACCT-----------------------------------------------------------------------------------------------------------------------------------------C--------TTCAGTATGCTGGCCTCAACATGCTGTTCCTTACTGAAAACCTCATCTAAAGAGCATGTGGCAACTTTGGTTTACTTTAtggattagttat----tgctgcataacaagttactttttgtttaaac i dasNov3.JH580157 I 453 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I a score=307362.000000 s hg38.chr2_KI270769v1_alt 61456 34 + 120616 tctgtgggctaaaaccacagggatgtatgacctt s panTro5.chr2A 3523409 34 + 111504155 tctgtgggctaaaaccacagggatgtatgacctt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384198 34 + 114371477 tctgtgggctaaaaccacagggatgtatgacctt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 261945 34 + 637652 tctgtgggctgaaaccacagggatgtatgacctt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3058284 34 + 81552678 tctgtgggctaaaaccacagggatgtatgacctc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3321054 34 + 108979918 tctatgggctaaaaccacagggatgtatgacctc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032190 34 - 111193037 tctatgggctaaaaccacagggatgtatgacctc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425160 34 + 3644372 tctatgggctaaaaccacagggatgtatgacctc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3380526 34 - 10304083 tctatgggctaaaaccacagggatgtatgacctc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3469404 34 - 107702431 tctatgggctaaaaccacagggatgtatgacctc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1013326 34 + 1565135 tctatgggctaaaaccacagggatgtatgacctc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3377748 34 - 13651311 tctatgggctaaaaccacagggatgtatgacctc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3465460 29 - 108792865 -----GAGCTGTAGCCACAGGGATGCACAGCctt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3113802 34 - 7082604 TCTATGCGCTGCAGCCCCAGGGCTGCACGACCTC i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1935859 34 - 1938448 TCCATGAGCTGCAGCCACAGGGATGCACGACCTC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2543979 34 + 5252280 tctgtggcttaaagcaacagggatttgtgatctc i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 576144 34 + 2232271 cttttggcttaaaacaatgaacagttattgtctt i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e cebCap1.NW_016107454v1 599531 21 + 5243153 I a score=2111000.000000 s hg38.chr2_KI270769v1_alt 61490 223 + 120616 cctatttctgtgggtctcgagtccagca-cagcttctgggtcgcactggctca-ggtctgtcctgaggttgcagttaagatggt------gaccgcagt--gtctcacctgagggctcagctggggctggagaactgggctcc-gggaggctccgtcatacacccgctgagttctgctgctgttggtgagagg-------------ctgggttcctggcctcatggttctttctgtagggcttcttg s panTro5.chr2A 3523443 223 + 111504155 cctatttctgtgggtcttgagtccagca-cagcttctgggtcgcactggctca-ggtctgtcctgaggttgcagttaggatggt------gaccgcagt--gtctcacctgagggctcagctggggctggagaactgggctcc-gggaggctccgtcatacacccgctgagttctgctgctgttggtgagagg-------------ctgggttcctggcctcatggttctttctgtagggcttctcg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384232 223 + 114371477 cctatttctgtgggtcttgagtccagca-cagcttctgggtcgcactggctca-ggtctgtcctgaggttgcagttacgatggt------gaccgcagt--gtctcacctgagggctcagctggggctggagaactgggctcc-gggaggctccatcatacacccgctgagttctgctgctgttggtgagagg-------------ctgggttcctggcctcatggttctttctgtagggcttctcg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 261979 223 + 637652 actatttctgtgggtctcgagtccagca-cagcttctgggtcgcactggctca-ggtctgtcctgaggttgcagttaagatggt------gaccgcagt--gtctcacctgagggctcagctggggctggagaactgggctcc-aggaggctccgtcatacacccgctgagttctgctgctgttggtgagagg-------------ctgggttcctggcctcatggttcgttctgtagggcttctcg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3058318 223 + 81552678 actatttctgtgggtctcgagtccagca-cagcttctgggtcgcactggctca-ggtctgtcctgaggttgcagttaagatgct------gactgcagt--gtctcacctgagggctcagctggggctggagaactgggctcc-aggaggctctgtcatatacccgctgagttctgctgctcttggtgagagg-------------ctgggttcctggcctcatggttctttctgtagggcttctca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3321088 223 + 108979918 actatttctgtgggtcttgagtccagca-cagcttctgggtcgcactggctca-ggtctgtcctgaggttgcagttaggatgct------gaccgcgct--gtctcacctgagggctcagctgggactggagaactgggctcc-tggaggctccgtcatacacccgccaagttctgctgctatgggtgagagg-------------ctgggttcctggcctcatggttctttctgtagggcttctca i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032224 223 - 111193037 actatttctgtgggtcttgagtccagca-cagcttctgggtcgcactggctca-ggtctgtcctgaggttgcagttaggatgct------gaccgcgct--gtctcacctgagggctcagctgggactggagaactgggctcc-tggaggctccgtcatacacccgccaagttctgctgctatgggtgagagg-------------ctgggttcctggcctcatggttctttctgtagggcttctca i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425194 223 + 3644372 actatttctgtgggtcttgagtccagca-cagcttctgggtcgcactggctca-ggtctgtcctgaggttgcagttaggatgct------gaccgcgct--gtctcacctgagggctcagctgggactggagaactgggctcc-tggaggctccgtcatacacccgccacgttctgctgctatgggtgagagg-------------ctgggttcctggcctcatggttctttctgtagggcttctca i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3380560 223 - 10304083 actatttctgtgggtcttgagtccagca-cagcttctgggtcgcactggctca-ggtctgtcctgaggttgcagttaggatgct------gaccgcgct--gtctcacctgagggctcagctgggactggagaactgggctcc-tggaggctctgtcatacacccgccaagttctgctgctatgggtgagagg-------------ctgggttcctggcttcatggttctttctgtagggcttctca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3469438 223 - 107702431 actatttctgtgggtctcgagtccagca-cagcttctgggtcacattggctca-ggtctgtcctgaggttgcagttaggatgct------gaccgcgct--gtctcacctgagggctcagctgggactggagaactgggctcc-tggaggctccgtcatacacccaccgagttctgctgctatgggtgagagg-------------ctgggttcctggcctcatggttctttctgtagggcttctcg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1013360 223 + 1565135 actatttctgtgggtcttgagtccagca-cagcttctgggtcgcaatggctca-ggtctgtcctgaggttgcagttaggatgct------gaccgcgct--gtctcacctgagggctcagctgggactggagaactgggctcc-tggaggctctgtcatacacctgccaagttctgctgctatgggtgagagg-------------ctgggttcctggcctcatggttctttctgtagggcttctca i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3377782 222 - 13651311 actatttctgtaggtcttgagtccagca-tagcttctgggtcgcactggctca-ggtctgtcctgaggttgcagttaggatact------gactgtgct--gtctcacctgagggctcagctgggactggagaactgggctcc-tggaggctctgtcatacacctgccgagttctgctgctatgggtgagagg-------------ct-ggttcctggccccatggttctttctgtagggcttctcg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3465489 191 - 108792865 gctgtttctgtgggtccggagtccagcg-cagct----------tctggctca-ggcctgtcctgaggctgccattatgatgtt------ggccgcact--gccccacctgagggcttggctggggcttgagagctgggctct--gggggctccctcctgtacccactgagctctgctgctgttggtgagagg-------------ctgggttcct---------------------gggcttctcg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3113836 218 - 7082604 GCTgtttctgtgggtctggggtccagcg-cagcttctgggtcgctctggctca-ggcttgtcccgaggctgcagttatgatgtt------ggccgtggttgtccccaccggagggctcagctggggctggagaaccggggtcc--gggggctccctcctacgcccaccgagctctgctgctgttggtgagagg-------------ctgggttcctgggctcat------ttctgtggggcttctcg i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 599552 209 + 5243153 GCTgtttctgtgggtctggggtccagcg-cagcttctgggtcgctgtggctca-ggcctgtcccgaggctgcagttatgacgtt------ggccgtgtt--gcctcacctgagggctcagctggggctggagaactgggcccc---ggggctccctcctgcacccaccgagctctgc------tggtgagagg-------------ctgggttcctgggcttat------ttctgtggagctcctcg i cebCap1.NW_016107454v1 I 21 C 0 s aotNan1.NW_018507213v1 1935893 216 - 1938448 GCTgtttctgtgggtctggagtccagcg-tggcttctgggtctctctggctca-ggcctgtcctgaggctgcagttatgatgtt------ggccgagct--gcctcacctgagggttcggctggggctggagaactgggctct--gggggctccctcctacacccaacaagctctgctgctgttggcgagagg-------------ctgggttcctgggcttat------ttctgtggggcttctcg i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2544013 212 + 5252280 actgtgtctgt-ggtctggggtcttcag-tagcttcaggggt-ttctggctcagggtatctcttatggctgcagccagg--------------CACATC--CTCACACGT---------GCATGGACTGGAGTGCTGGCCTCC-AGGGTCCCCC------CAGCCTGCGAGTGTCCTCCTTGTTGGTAGGAGGCCTCAGGTCCTGCCTGGGGCCCTCCCAAGAATGTCCTTATACCAGGGCTCCCTG i otoGar3.GL873658 C 0 I 175 s dasNov3.JH580157 576178 225 + 2232271 gccatctctg--ggtcaggagctcaggagcagcttt--ggtgactttggctcagggtgtctcgtgaggtggcagtcaaggtgtcccttggggccacagt------catatgaagggggcgctggggctgaagaattggcttccctagtggctcc-tcacacacttgtcaagtttgctaattactggcagcaggcc-----------cccatttctttgctgctgtgacctttctgtagggctactga i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I a score=190881.000000 s hg38.chr2_KI270769v1_alt 61713 22 + 120616 --tgcgtctcacagcatagcagct s panTro5.chr2A 3523666 22 + 111504155 --tgcatctcacagcatagcagct i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384455 22 + 114371477 --tgcatctcacagcatagcagct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262202 22 + 637652 --tgcatctcatagcatagcagct i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3058541 22 + 81552678 --tgcgtctcacagcattgcagct i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3321311 22 + 108979918 --tgcatctcacagcatagccact i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032447 22 - 111193037 --tgcatctcacagcatagccact i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425417 22 + 3644372 --tgcatctcacagcatagccact i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3380783 22 - 10304083 --tacatctcacagcatagccact i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3469661 22 - 107702431 --tgcatctcacagcatagccact i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1013583 22 + 1565135 --tgcatctcacagcatagccact i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378004 22 - 13651311 --tgcatctcacagcatggcagct i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3465680 22 - 108792865 --tgtgtcgcacagcatggcagct i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114054 22 - 7082604 --tgtgtcggacagaagggcagct i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 599761 22 + 5243153 --tgtgtcgcacagcatggcagct i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1936109 22 - 1938448 --tgtgtcgcacagcatggcagct i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 576403 23 + 2232271 agtgt-cctcaagccattgcagct i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e otoGar3.GL873658 2544225 175 + 5252280 I a score=2143926.000000 s hg38.chr2_KI270769v1_alt 61735 271 + 120616 ggctccct--gca---------------------------------------------------------gagagggag---ggaggaggaggaagcc---acagtgccttgcacggcc---------gggtctcag-----aggtctc--tatgtcccctccacctggttctttttgtcaga--cgag--tcactaagtccaggccacacgcaagggatggg-aatgagactct--gccttttgagg--a--gtgctcaggaatgcatggccgca-tttaaactgccacaCTGTGGCCGGTCAGCTGG-GTCTGTTCCACTTCAGGATCCACAGGCCTCTCCTG-GCCCTGCAGGACAGGCTC--CC s panTro5.chr2A 3523688 270 + 111504155 ggctccct--gca---------------------------------------------------------gagagggag---ggaggaggaggaagcc---acagtgccttgcacggcc---------gggtctcag-----aggtctc--tatgtcccctccacctggttctgtttgttgga--cgag--tcactaagtccaggccacatgcaagggatggg-aatgagactct--gccttttgagg--a--gtgctcaggaatgcatggccgca-tttaaactgccacaCTG-GGCCGGTCAGCTGG-GTCTGTTCCACTTCAGGATCCACAGGCCTCTCCTG-GCCCTGCAGGACAGGCTC--CC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384477 225 + 114371477 ggctccct--gca---------------------------------------------------------gagagggag---ggaggaggaggaagcc---acagtgccttgcacggcc---------gggtctcag-----aggtctc----tgtcccctccacctggttctgtttgttgga--cttg--tcactaagtcc------------------------------------------------a--gTGCTCAGGAATGCATGGCCGCA-TTTAAACTGCCACACTG-GGCCGGTCAGCTGG-GTCTGTTCCACTTCAGGATCCACAGGCCTCTCCTG-GCCCTGCAGGACAGGCTC--CC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262224 271 + 637652 ggctccct--gca---------------------------------------------------------gagagggag---ggaggaggaggaagcc---acagtgccttgcacggcc---------ggctctcag-----aggtctc--tatgtcccctccacctggttctgtttgttgga--cgag--tcactaagcccaggccacacgcaagggatggg-aatgagactct--accttttgagg--a--gtgctcaggaatgcatggccgca-tttaaactgccacaCTGTGGCCGGGCAGCTGG-GTCTGTTCCACTTCAGGATCCACAGGCCTCTCCTG-GCCCTGCAGGACAGGCTC--CC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3058563 266 + 81552678 ggctccct--gca---------------------------------------------------------gagagggag---ggaggaggaggaagcc---acagtgccttgcacggcc---------gggtctcag-----aggtctc----tgtccactccacctggttctgtttgttgga--cgag--tcactaagtccaggccacacacaagggatggg-aatgaga--ct--gccttttgagg--a--gtgttcaggaatgcatggccacg-tttaaactgccacaCTGTGGCCAGTCAGCTGG-GTCTGTTCCACTTCA-GATACACAGGCCTCTCCTG-GCCCTGCAGGACAGGCTC--CC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3321333 269 + 108979918 ggctccct--gca---------------------------------------------------------gagagggag---ggaggaggaggaagcc---acagtgccttgcatggcc---------aggtctcac-----aggtctc--catgtcccctccacctggttctgtttgttgga--caag--tcaccaagtccagcccacgcgcgagggatggg-aatgaca--ct--gccttttgagg--a--gtgctcaggaatgcatggccgcg-tttaaactgccgcCCCGCGGCCAGTCAGCTGG-GTCTGTGCCACTTCAGGATGCACAGGCCTCTCCTG-GCCCCGCAGGACGGGCTC--AC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032469 269 - 111193037 ggctccct--gca---------------------------------------------------------gagagggag---ggaggaggaggaagcc---acagtgccttgcatggcc---------aggtctcag-----aggtctc--catgtcccctccacctggttctgtttgttgga--caag--tcaccaagtccagcccacgcgcgagggatggg-aatgaca--ct--gccttttgagg--a--gtgctcaggaatgcatggccgcg-tttaaactgccgcCCCGCGGCCAGTCAGCTGG-GTCTGTGCCACTTCAGGATGCACAGGCCTCTCCTG-GCCCCGCAGGACGGGCTC--AC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425439 269 + 3644372 ggctccct--gca---------------------------------------------------------gagagggag---ggaggaggaggaagcc---acagtgccttgcatggcc---------gggtctcag-----aggtctc--catgtcccctccacctggttctgtttgttgga--caag--tcaccaagtccagcccacgcgcgagggatggg-aatgaca--ct--gccttttgagg--a--gtgctcaggaatgcatggccgcg-tttaaactgccgcCCCGCGGCCAGTCAGCTGG-GTCTGTGCCACTTCAGGATGCACAGGCCTCTCCTG-GCCCCGCAGGACGGGCTC--AC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3380805 269 - 10304083 ggctccct--gca---------------------------------------------------------gagagggag---ggaggaggaggaagcc---acagtgccttgcatggcc---------gggtctcag-----aggtctc--catgtcccctccaccgggttctgtttgttgga--caag--tcactaagtccagcccacacgcgagggatggg-aaagaga--ct--gccttttgagg--a--atgctcaggaatgcatggccgcg-tttaaactgccacCCCGCGGCCAGTCAGCTGG-GTCTGTTCCACTTCAGGATGCACAGGCCTCTCCTG-GCCCTGCAGGACAGGCTC--AC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3469683 269 - 107702431 ggctccct--gca---------------------------------------------------------gagagggag---ggaggaggaggaagcc---acagtgccttgcatggcc---------gggtctcag-----aggtttc--catgtcccctccacctggttctgtttgttgga--caag--tcactaagtccagcccacacgcgagggatggg-aatgaga--ct--gccttttgagg--a--gtgctcaggaatgcatggccgcg-tttaaactgccacaGCGTGGCCAGTCAGCTGG-GTCTGTTCCACTTCAGGATGCCCAGGCCGCTCCTA-GCCCTGCAGGACAGGCTC--AC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1013605 272 + 1565135 ggctccct--gca---------------------------------------------------------gagagggagggaggaggaggaggaagcc---acagtgccttgcatggcc---------ggatctcag-----aggtctc--catgtcccctccaccgggttctgtttgttgga--caag--tcactaagtccagcccacacgcgagggatggg-aaagaga--ct--gccttttgagg--a--gtgctcaggaatgcatggccgcg-tttaaactgccacCCCGCGGCCAGTCAGCTGG-GTCTGTTCCACTTCAGGATGCACAGGCCTCTCCTG-GCCCTGCAGGACAGGCTC--AC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378026 266 - 13651311 ggctccct--gca---------------------------------------------------------gagagggag---ggaggaggaggaagcc---acagcgccttgca-ggcc---------gggtctcag-----aggtctc--cctgtcccctccacctggt--tgtttgttgga--caag--tcactaagtccagcccacacgccagggatggg-aatgagg--ct--gccttttaagg--a--gtgctcaggaatgcatggccgcg-tttaaactgccacaCTGTGGCCAGTCGACTGG-GTCTGTTCCACTTCAGGATGCACAGGCCTCTCCTG-GCCCTGCAGGACAGGCTC--AC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3465702 233 - 108792865 ggctccct--gca---------------------------------------------------------gagagggag---cgaagaggaggaagtc---actgtgccttgcggggcc---------tggtctcag-----aGACCTC--CATGTCCCCTCCACCTGgt----------------------cactaagtccagcccacacgc-agggatggg-aatgagg--ct-ctccttttgagg--a--gtgttgaggaacacgtggccaca-----------------GTGGCC-GTCAGCTGGGGTCCGTTCCACTTCAGAATGCACTGGCCTCTCCTG-GCCCTGCAGGGTGGTTTC---- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114076 233 - 7082604 ggctcccg--aca---------------------------------------------------------gagaggcag---ggaggaggaggaagcc---actgtgccttgcggggcc---------tggtctcgg-----agacctc--catgtcccctccacctggt----------------------cactaagtccagcccacatgc-agggatggg-aatgagg--ct-ctccttttgagg--a--gtgttgagggacgcgtggccaca-----------------GTGGTC-GTCAGCTGGGGTCTGTTCCACTTCAGGATGCACCGGCCTCTCCTG-GCCCTGCAGGGCGGGCTC---- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 599783 219 + 5243153 ggctcccg--aca---------------------------------------------------------gagaggcaa---ggaggaggaggaagcc---actgtgccttgcaggg----------------------------cctC--CATGTCCCCTCCACCTGgt----------------------caccaagtccagcccacacgc-agggatggg-gatgagg--ct-ctccttttgagg--a--gtgttgaggaacgcgtggccaca-----------------GTGGCG-GTCAGCCGGAGTCCGTTCCACTTCAGGATGCACCGGCCTCTCCTG-GCCCTGCAGGGCGGGCTC---- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1936131 233 - 1938448 gactccca--aca---------------------------------------------------------gaggg--ag---ggaggaggaggaagcc---actgtaccttgcggggcc---------tggtctcag-----agacctc--catgtcccctccaccttgt----------------------cactaagtccagcccacacgc-agggatggg-aacgagg--ct-ctccttttgagg--a--gtgttgaggaactcgtggccaca-----------------GTGGCC-GTCAGCTGGGGTCCATTCCACTTCAGGACGCACCGGCCTCTCCTG-GCCCTGCAGGGCGGGCTCCC-- i aotNan1.NW_018507213v1 C 0 I 88 s otoGar3.GL873658 2544400 342 + 5252280 ggcactct--gcactctaccctctaccgagggctacagagtaagactttTTTTTTATTTTTGAGACAGAGGAaggagag---ggagggaaaaggagccaggacaatgcctttc-cgacctcacatggaagatcacagcatcaacattgc--catgtcacttccccctgatttctgtggctaaagtagag--tcactgagtctggtccacatgcaaggggcggg--atgcag--ct--tcacACTGAGGACA--GTGTTGGAGAATGTG-GGAGGTG-TTTCAACCTCCGCACC-TGGTCGGTCAGCTCAGGCCTATCACACTGCAGGCCACCGAGCCCCTTACTGCGCTCAGGAAGAGAGCCG----- i otoGar3.GL873658 I 175 C 0 s dasNov3.JH580157 576426 269 + 2232271 ggcttcctgagcg---------------------------------------------------------tgagtgaag---agaagcggaagaagcc---ataatgtcttttatggcc---------taatcttaa-----agatcacacagtggcatttctacctaattctgttgattaga--agagacttaccaagtccagcccacactcaaggggagggaaattagg--ctgcaccttctgaaa--acggtatcagagaatttgtggacctgttttaaaccacGCTGCCTTGGTTAATCAGCTTGAATCT------CTTAAGGACATAAAGGCTTCCTCTT--------AGTAAGGACCC--TC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I a score=344086.000000 s hg38.chr2_KI270769v1_alt 62006 47 + 120616 CTGCCT----------------------------CCACTCCAG-CCCGTCCTGGTGGTTGTGAGCCGCACTTAACC s panTro5.chr2A 3523958 47 + 111504155 CTGCCT----------------------------CCACTCCAG-CCCGTCCTGGTGGTTGTGAGCCGCACTTAACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384702 47 + 114371477 CTGCCT----------------------------CCACTCCAG-CCCGTCCTGGTGGTTGTGAGCCGCACTTAACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262495 47 + 637652 CTGCCT----------------------------CCACTCCAG-CCCGTCCTGGTGGTTGTGAGCCGCACTTAACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3058829 46 + 81552678 CTGCCT----------------------------CCACTCCAG-CCCGTCCT-GTGGTTGTGAGCTGCACTTCACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3321602 75 + 108979918 CTGCCTCCACCCCAGGCCGTCCTGGTGTTTGTGGCCACCCCAG-GCCGTCCTGGTGTTTGTGGACTTCGCTTCACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032738 75 - 111193037 CTGCCTCCACCCCAGGCCGTCCTGGTGTTTGTGGCCACCCCAG-GCCGTCCTGGTGTTTGTGGACTTCGCTTCACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425708 47 + 3644372 CTGCCT----------------------------CCACCCCAG-GCCGTCCTGGTGTTTGTGGACTGCGCTTCACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381074 47 - 10304083 CTGCCT----------------------------CCACCCCAG-GCCGTCCTGGTGTTTGTGGACTGCACTTCACC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3469952 47 - 107702431 CTGCCT----------------------------CCGCCCCAG-GCCTTCCTGGTGTTTGTGGACGGCACTTCACC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1013877 47 + 1565135 CTGCCT----------------------------CCACCCCAG-GCCGTCCTGGTGTTTGTGGACTGCACTTCACC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378292 47 - 13651311 CTGCCT----------------------------CCACCCCAG-GCCGTCCTGGTGTTTGTGAACTGCACTTCACC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3465935 47 - 108792865 CTGCCT----------------------------CCACCCCAG-CCCAGCCCGGCAGCTGTGAGCTGCACTTCACC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114309 47 - 7082604 CCGCCT----------------------------CCACCCCAG-CCCGGCCCGCCGGTTGCGAGCTGCACTTCCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600002 47 + 5243153 CTGCCT----------------------------CCACCCCAG-CCCGGCCCTACGGTTGTGAGCTGCACTTCACC i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2544742 45 + 5252280 -CTCCC----------------------------CGATCCCAGTCCCACCCTGGTGTCTGAGTGC--CACTTGCCC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 576695 46 + 2232271 --TCCT----------------------------CCATTTCAGTCCCTTCAAGGTGAATTTGGAGCACAGTTGATC i dasNov3.JH580157 C 0 I 543 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e aotNan1.NW_018507213v1 1936364 88 - 1938448 I a score=122713.000000 s hg38.chr2_KI270769v1_alt 62053 22 + 120616 CTGCCA-------------GGATGC----------------------------GGCTTGTACT s panTro5.chr2A 3524005 22 + 111504155 CTGCCA-------------GGATGC----------------------------GGCTTGTACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384749 22 + 114371477 CTGCCA-------------GGATGC----------------------------GGCTTGTACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262542 22 + 637652 CTGCCA-------------GGATGC----------------------------GGCTTGTACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3058875 21 + 81552678 TTGCCA-------------GGATGC-----------------------------GCTCGTACT i nomLeu3.chr19 C 0 M 659 s rheMac8.chr13 3321677 22 + 108979918 CTGCCA-------------GCATGC----------------------------GGCTCGTACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032813 22 - 111193037 CTGCCA-------------GCATGC----------------------------GGCTCGTACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425755 22 + 3644372 CTGCCA-------------GCATGC----------------------------GGCTCGTACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381121 22 - 10304083 CTGCCA-------------GCGTGC----------------------------GGCTCGTACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3469999 50 - 107702431 CCGCCA-------------GCATGCGGCTCGGCACTTCACCCTGCCAGCATGTGGCTCGTACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1013924 22 + 1565135 CTGCCA-------------GCATGC----------------------------GGCTCGTACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378339 22 - 13651311 CTGCCA-------------GCATGC----------------------------GGCTCGTACC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3465982 35 - 108792865 CCACCAGCTACAGGCTCGGGCATGC----------------------------GGCTCATGCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114356 35 - 7082604 CCACCAGCTGCAGGCTCGGGCATGC----------------------------GGCTCGTGCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600049 35 + 5243153 CCAACAGCTGCAGGCTCGGGCACGC----------------------------GGCTCGTGCT i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2544787 39 + 5252280 CCGGAAGGTGCAGGCCT--GGGTGC----------------------TTGGCTTGCTGGTGCC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 576741 543 + 2232271 I e aotNan1.NW_018507213v1 1936364 88 - 1938448 I a score=284318.000000 s hg38.chr2_KI270769v1_alt 62075 38 + 120616 -gggaggcccatgggctccgagaggacttcccttcaacc s panTro5.chr2A 3524027 38 + 111504155 -GGGAGGCCCATGGGCTCCGAGAGGACTTCCCTTCAACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384771 38 + 114371477 -gggaggcccatgggctccgagaggacttcccttcaacc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262564 38 + 637652 -GGGAGGCCCATGGGCTCCGAGAGGACTTCCCTTCAACC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3321699 38 + 108979918 -GGGAGGCCCATGGGCTCCGAGAGGACCTCCCTTCAACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032835 38 - 111193037 -GGGAGGCCCATGGGCTCCGAGAGGACCTCCCTTCAACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425777 38 + 3644372 -GGGAGGCCCATGGGCTCCGAGAGGACCTCCCTTCAACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381143 38 - 10304083 -gggaggcccatgggctccgagaggacctcccttcaacc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470049 38 - 107702431 -GGGAGGCCCCTGGGCTCCGAGAGGACCTACCTTCAACC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1013946 38 + 1565135 -GGGAGGCCCATGGGCTCCGAGAGGACCTCCCTTCAACC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378361 38 - 13651311 -GGGAGGCCCATGGGCTCCGGGAGGACTTCCCTTCAACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466017 38 - 108792865 -GGGAAGCTCATGGACTCCGAGAGGCCTGCTCTCTTCAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114391 38 - 7082604 -GGGGAGCTCATGGACTCCGAGAGGCCTGCCCTTCAGCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600084 38 + 5243153 -GGGAAGCTCATGGACCCCAAGAGGCCTGCCCTTCAGCC i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2544826 33 + 5252280 GGGCTGGC------ACTCTGAGAAGCCTCACCTGCAACC i otoGar3.GL873658 C 0 I 132 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 576741 543 + 2232271 I e aotNan1.NW_018507213v1 1936364 88 - 1938448 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=49490.000000 s hg38.chr2_KI270769v1_alt 62113 7 + 120616 tccaggc s panTro5.chr2A 3524065 7 + 111504155 TCCAGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384809 7 + 114371477 tccaggc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262602 7 + 637652 TCCAGGC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3321737 7 + 108979918 TCCAGGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032873 7 - 111193037 TCCAGGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425815 7 + 3644372 TCCAGGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381181 7 - 10304083 tccaggc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470087 7 - 107702431 TCCAGGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1013984 7 + 1565135 TCCAGGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378399 7 - 13651311 GCCAGGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466055 7 - 108792865 TTTGGGG i calJac3.chr14 C 0 I 71 s saiBol1.JH378218 3114429 7 - 7082604 TCCAGGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600122 7 + 5243153 TCCAGGA i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2544991 7 + 5252280 tcgcggc i otoGar3.GL873658 I 132 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 576741 543 + 2232271 I e aotNan1.NW_018507213v1 1936364 88 - 1938448 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=96220.000000 s hg38.chr2_KI270769v1_alt 62120 16 + 120616 -------accttgaa----actgccca s panTro5.chr2A 3524072 16 + 111504155 -------ACCTTGAA----ACTGCCCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384816 16 + 114371477 -------accttgaa----actgccca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262609 16 + 637652 -------ACCTTGAA----ACTGCCCA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3321744 16 + 108979918 -------ACCTTGAG----ACTGCCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032880 16 - 111193037 -------ACCTTGAG----ACTGCCCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425822 16 + 3644372 -------ACCTTGAG----ACTGCCCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381188 16 - 10304083 -------accttgag----actgccca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470094 16 - 107702431 -------ACCTTGAA----ACTGCCCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1013991 16 + 1565135 -------ACCTTGAA----ACTGCCCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378406 16 - 13651311 -------ACCTTGAA----ACTGCCCA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3114436 16 - 7082604 -------ACCTCGCA----GCTGCCCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600129 16 + 5243153 -------AACTCGCA----GCTGCCCA i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2544998 27 + 5252280 attaggaaggttgagaaccactgGTCT i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 576741 543 + 2232271 I e aotNan1.NW_018507213v1 1936364 88 - 1938448 I e calJac3.chr14 3466062 71 - 108792865 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=8666.000000 s hg38.chr2_KI270769v1_alt 62136 1 + 120616 g s panTro5.chr2A 3524088 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384832 1 + 114371477 g i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262625 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3321760 1 + 108979918 G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032896 1 - 111193037 G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425838 1 + 3644372 G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381204 1 - 10304083 g i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470110 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014007 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378422 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466133 1 - 108792865 G i calJac3.chr14 I 71 C 0 s saiBol1.JH378218 3114452 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600145 1 + 5243153 G i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2545025 1 + 5252280 A i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 576741 543 + 2232271 I e aotNan1.NW_018507213v1 1936364 88 - 1938448 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=136825.000000 s hg38.chr2_KI270769v1_alt 62137 15 + 120616 cagccaaacctcag--------------------------------a s panTro5.chr2A 3524089 15 + 111504155 CAGCCAAACCTCGG--------------------------------A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384833 15 + 114371477 cagccaaacctcag--------------------------------a i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262626 15 + 637652 CAGCCAAACCTCAG--------------------------------A i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3321761 15 + 108979918 CAGCCAAACCTCGG--------------------------------A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032897 15 - 111193037 CAGCCAAACCTCGG--------------------------------A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425839 15 + 3644372 CAGCCAAACCTCGG--------------------------------A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381205 15 - 10304083 cagccaaacctcgg--------------------------------a i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470111 15 - 107702431 CAGCCAAACCTCGG--------------------------------A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014008 15 + 1565135 CAGCCAAACCTCGG--------------------------------A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378423 15 - 13651311 CAGCCAAACCTCGG--------------------------------A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466134 15 - 108792865 CAGCCAAACCTCAG--------------------------------A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114453 15 - 7082604 CAGCCAAACCTCGG--------------------------------A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600146 15 + 5243153 CAGCCAAACCTCGG--------------------------------A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1936452 15 - 1938448 CAGCCAAACCTCGG--------------------------------A i aotNan1.NW_018507213v1 I 88 C 0 s otoGar3.GL873658 2545026 47 + 5252280 CAGGCAGATCCCAGCACAGCTTACAGCTCTCCCCCTCAGCCAAGGCA i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2653873 974 - 159902609 I e mm10.chr12 91419508 2295 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 576741 543 + 2232271 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=273267.000000 s hg38.chr2_KI270769v1_alt 62152 30 + 120616 gctg------------tggaagctcctggacgtttcaaagac s panTro5.chr2A 3524104 30 + 111504155 GCTG------------TGGAAGCTCCTGGACGTTTCAAAGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384848 30 + 114371477 gctg------------tggaagctcctggacgtttcaaagac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262641 30 + 637652 GCTG------------TGGAAGCTGCTGGACGTTTCAAAGAC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3321776 29 + 108979918 GCTG------------TGGAAGCTCCTGGATG-TTCAAAGAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032912 29 - 111193037 GCTG------------TGGAAGCTCCTGGATG-TTCAAAGAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425854 29 + 3644372 GCTG------------TGGAAGCTCCTGGATG-TTCAAAGAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381220 29 - 10304083 gctg------------tggaagctcctggatg-ttcaaagac i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470126 29 - 107702431 GCTG------------TGGAAGCTCCTGGATG-TTCAAAGAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014023 29 + 1565135 GCTG------------TGGAAGCTCCTGGATG-TTCAAAGAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378438 29 - 13651311 GCTG------------TGGAAGCTCCTGGATG-TTCAAAGAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466149 29 - 108792865 G-TG------------TGGAAGCTCCTGGAAGTTTCAGAGGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114468 30 - 7082604 GTTG------------TGGAAGCTCCTGGAAGTTTCAAAGGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600161 30 + 5243153 GTTG------------TGGAAGCTCCTGGAAGTTTCAAAGGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1936467 30 - 1938448 GTTG------------TGGAAGCTCCTGGAGGTTTCAAAGGC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2545073 42 + 5252280 GCCGCCTACTGCCCCATGGAAGCTGTTGGAAGTTTCAAAGAC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91421803 30 - 120129022 GCTG------------AGAAAGCTCCCAGAAGTTCTAGAGAC i mm10.chr12 I 2295 C 0 e micMur3.chr8 2653873 974 - 159902609 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 576741 543 + 2232271 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=332980.000000 s hg38.chr2_KI270769v1_alt 62182 28 + 120616 ccacttaatatttaatagtcaGTGCAGC s panTro5.chr2A 3524134 28 + 111504155 CCACTTAATATTTAGAAGTCAGTGCAGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384878 28 + 114371477 ccacttAATATTTAGAAGTCAGTGCAGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262671 28 + 637652 CCACTTAATATTTAATAGTCAGTGCAGC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3321805 28 + 108979918 CCACTTAATATTTAATAGTCAGTGCAGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032941 28 - 111193037 CCACTTAATATTTAATAGTCAGTGCAGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425883 28 + 3644372 CCACTTAATATTTAATAGTCAGTGCAGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381249 28 - 10304083 ccacttaatatttaatagtcaGTGCAGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470155 28 - 107702431 CCACTTAATATTTAATAGTCAGTGCAGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014052 28 + 1565135 CCACTTAATATTTAATAGTCAGTGCAGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378467 28 - 13651311 CCACTTAATATTTAATAGTCAGTGCAGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466178 28 - 108792865 CCACTTAATATGTAATAGTCAGTGCAAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114498 28 - 7082604 CCACTTAATATGTAATAGTCAGTGCAGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600191 28 + 5243153 CCACTTAATATGTAATAGTCAATGCAGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1936497 28 - 1938448 CCATTTAATATGTAATAGTCAGTGCAGC i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2654847 28 - 159902609 CCACTTAATATTTGGCAGTCAGTGCAGC i micMur3.chr8 I 974 C 0 s otoGar3.GL873658 2545115 28 + 5252280 CCACCTAGTAGTTAACAGCCAACGCAGC i otoGar3.GL873658 C 0 I 89 s mm10.chr12 91421833 27 - 120129022 CCACTTACTACTTAGCAGTCAGCA-AGC i mm10.chr12 C 0 C 0 e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 576741 543 + 2232271 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=347309.000000 s hg38.chr2_KI270769v1_alt 62210 34 + 120616 ATTAATTTCATTGCTCCCCGATCCCACATATCGA s panTro5.chr2A 3524162 34 + 111504155 ATTAATTTCATTGCTCCCCGATCCCACATAGCGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384906 34 + 114371477 ATTAATTTCATTGCTCCCCGATCCCACATAGCGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262699 34 + 637652 ATTGATTTCATTGCTCCCTGATCCCACATGTCGA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3321833 34 + 108979918 ATTAATTTCATTGCTCCCCGATCCCACATATCGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5032969 34 - 111193037 ATTAATTTCATTGCTCCCCGATCCCACATATCGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425911 34 + 3644372 ATTAATTTCATTGCTCCCCAATCCCACATATCGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381277 34 - 10304083 ATTAATTTCATTGCTCCCCGATCCCACATATCGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470183 34 - 107702431 ATTAATTTCATTGCTCCCCGATCCCACATATCGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014080 34 + 1565135 ATTAATTTCATTGCTCCCCGATCCCACATATCGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378495 34 - 13651311 ATTAATTTCATTGCTCCCCAATCCCACATATCGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466206 34 - 108792865 ATTGATTTAATTGCTCCCCAATCCCACACACCAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114526 34 - 7082604 ATTAATTTAATTGCTCCCCGATCCCACATACCGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600219 34 + 5243153 ATTAATTTAATCGCTCCCCGATCCCACATACCGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1936525 34 - 1938448 ATTAATTTAACTGCTCCCCAATCCCACATACCGA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2654875 34 - 159902609 ACTGATCTCGTTGCTCCCACGTCACACAGATCTA i micMur3.chr8 C 0 C 0 s mm10.chr12 91421860 34 - 120129022 ATTAGCCTCATTGCTCCCAGATCACGCATTTCCA i mm10.chr12 C 0 C 0 e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 576741 543 + 2232271 I e otoGar3.GL873658 2545143 89 + 5252280 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=237419.000000 s hg38.chr2_KI270769v1_alt 62244 22 + 120616 AACCTTTCACAGTTTAGTACAG s panTro5.chr2A 3524196 22 + 111504155 AACCTTTCACAGTTTAGTACAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384940 22 + 114371477 AACCTTTCACAGTTTAGTACAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262733 22 + 637652 AACCTTTCACAGTTTAGTACAG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3321867 22 + 108979918 AACCTTTCACAGTTCAGTACAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033003 22 - 111193037 AACCTTTCACAGTTCAGTACAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425945 22 + 3644372 AACCTTTCACAGTTCAGTACAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381311 22 - 10304083 AACCTTTCACAGTTTAGTACAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470217 22 - 107702431 AACCTTTCACAGTTTAGTACAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014114 22 + 1565135 AACCTTTCACAGTTTAGTACAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378529 22 - 13651311 AACCTTTCACAGTTTAGTACCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466240 20 - 108792865 AACCTTTCA--GTTTAGCACAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114560 22 - 7082604 AACCTTTCACCGTTTAGCACAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600253 22 + 5243153 AACCCTTCACAGTTTAGCACGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1936559 22 - 1938448 AACCTTTCACAGTTTAGCACGG i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2654909 22 - 159902609 AGCCTTTCACCGTTTATTACAC i micMur3.chr8 C 0 C 0 s otoGar3.GL873658 2545232 22 + 5252280 AACCTTGCACAGTTCATTACAA i otoGar3.GL873658 I 89 C 0 s mm10.chr12 91421894 21 - 120129022 ACCCTTTTATA-TTTGTTACAG i mm10.chr12 C 0 C 0 e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 965134 1345 + 1238772 I e dasNov3.JH580157 576741 543 + 2232271 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=408041.000000 s hg38.chr2_KI270769v1_alt 62266 32 + 120616 GGATGATGGTG--AAAGAGAAACCACAGGGAAAA s panTro5.chr2A 3524218 32 + 111504155 GGATGATGGTG--AAAGAGAAACCACAGGGAAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384962 32 + 114371477 GGATGATGGTG--AAAGAGAAACCACAGGGAAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262755 32 + 637652 GGATGATGGTG--AAAGAGAAACCACAGGGAAAA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3321889 32 + 108979918 GGATGGTGGTG--AAAGAGAAACCACAGGGAAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033025 32 - 111193037 GGATGGTGGTG--AAAGAGAAACCACAGGGAAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425967 32 + 3644372 GAATGGTGGTG--AAAGAGAAACCACAGGGAAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381333 32 - 10304083 GGATGGTGGTG--AAAGAGAAACCACAGGGAAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470239 32 - 107702431 GGATGATGGTG--AAAGAGAAACCACAGGGAAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014136 32 + 1565135 GGATGGTGGTG--AAAGAGAAACCACAGGGAAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378551 32 - 13651311 GGATGATGGTG--AAAGAGAAACCGCAGGGAAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466260 32 - 108792865 GGATGATGGCG--AAAGAGAAGCCACAGAGAAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114582 32 - 7082604 AGATGATGGCG--AAAGAGAAGCCACAGGGAAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600275 32 + 5243153 GGATGATGGCG--AAAGAGAAGCCACAGGGAAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1936581 32 - 1938448 GGATGATGGTG--AAAGAGAAGCCACAGGGAAAA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2654931 32 - 159902609 AGATAAGGGTG--AAAGAGAAACCACAGTGAAAA i micMur3.chr8 C 0 I 1799 s proCoq1.NW_012151163v1 966479 31 + 1238772 GGATGAGGGTG--GAAGAGAAACCACAGTGAAA- i proCoq1.NW_012151163v1 I 1345 C 0 s otoGar3.GL873658 2545254 31 + 5252280 GGAAAATGGTG---AAGAGAAATCCCAATGAAAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91421915 34 - 120129022 GGATGAAGGCAGAAAAAAAAGACCACAGGAAAAA i mm10.chr12 C 0 C 0 e canFam3.chr17 2047157 73 + 64289059 I e dasNov3.JH580157 576741 543 + 2232271 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=389132.000000 s hg38.chr2_KI270769v1_alt 62298 39 + 120616 TCCGAGGCAGTGGAA----------TTGTTTAATTTCTGGTTGCTTCTC s panTro5.chr2A 3524250 39 + 111504155 TCCGAGGCAGTGGAA----------TTGTTTAATTTCTGGTTGCTTCTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3384994 39 + 114371477 TCCGAGGCAGTGGAA----------TTGTTTAATTTCTGGTTGCTTCTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262787 39 + 637652 TCCGAGGCAGTGGAA----------TTGTTTAATTTCTGGTTGCTTCTC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3321921 39 + 108979918 TCCAAGGCAGTGGGA----------TTGTTTAATTTCCGGTTGCTTCTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033057 39 - 111193037 TCCAAGGCAGTGGGA----------TTGTTTAATTTCCGGTTGCTTCTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3425999 39 + 3644372 TCCAAGGCAGTGGGA----------TTGTTTAATTTCCGGTTGCTTCTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381365 39 - 10304083 TCCAAGGCAGTGGGA----------TTGTTTAATTTCTGGTTGCTTCTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470271 39 - 107702431 TCCAAGGCAGTGGGA----------TTGTTTAATTTCTGGTTGCTTCTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014168 39 + 1565135 TCCAAGGCAGTGGGA----------TTGTTTAATTTCTGGTTGCTTCTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378583 39 - 13651311 TCCAAGGCAGTGGGA----------TTGTTTAGTTTCTGGTTGCTTCTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466292 38 - 108792865 -CTGAGGCATTGAAA----------TGTTTACATTTCCGGTTGCTTCTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114614 38 - 7082604 -CTGAAGCAGTGGAA----------TTTTTACATTTCTGGTTGCTTCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600307 38 + 5243153 -CTGAGGCAGTGGAA----------TTTTTACGTTTCTGGTTGCTTCTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1936613 38 - 1938448 -CTGAGGCAGTGGAA----------TTTTTACATTTCTGGTTGCTTCTC i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 966510 39 + 1238772 CCCGAGACAGTGGGA----------CTTGTAGACTTCTGGTTGCTTCTC i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2545285 34 + 5252280 -CCTAGAATTT--------------CTTTTTAATTTCTTGTTGCTTCTC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91421949 49 - 120129022 TCTGAGGCGGAGGAGCAGTTTTAATTTTTTTAATTTCTTGTTGCTGTTC i mm10.chr12 C 0 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e canFam3.chr17 2047157 73 + 64289059 I e dasNov3.JH580157 576741 543 + 2232271 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=1140564.000000 s hg38.chr2_KI270769v1_alt 62337 104 + 120616 CTCTTATTTGTAATTAA--TATCCATTCagcatctttaaagcttacaaaatgctt-caagtacattctcattggagttccatgatttgtaaaacaggcatgtgaaaa s panTro5.chr2A 3524289 104 + 111504155 CTCTTATTTGTAATtca--tatccattcagcatctttaaagcttacaaaatgctt-caagtacattctcattggagttccgtgatttgtaaaacaggcatgtgaaaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385033 104 + 114371477 CTCTTATTTGTAATtca--tatccattcagcatctttaaagcttacaaaatgctt-caagtacattctcattggagttccgtgatttgtaaaacaggcatgtgaaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262826 104 + 637652 CTCTTATTTGTAATTAa--tatccgttcagcatctttaaagcttacaaaatgctt-caagtacattctcattggagttccatgatttgtaaaacaggcatgtgaaaa i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3321960 104 + 108979918 CTTTTATTTGTAATTAA--TATCCATTCagcatttttaaagcttacaaaatgctt-caagcacattctcattggagttctgtgatttgtaaaacaggcatgtgaaaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033096 104 - 111193037 CTTTTATTTGTAATTAA--TATCCATTCAGCATTTTTAAAGCTTACAAAATGCTT-CAAGCACATTCTCATTGGAGTTCTGTGATTTGTAAAACAGGCATGTGAAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426038 104 + 3644372 CTTTTATTTGTAATTAa--tatccattcagcatttttaaagcttacaaaatgctt-caagcacattctcattggagttctgtgatttgtaaaacaggcatgtgaaaa i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381404 104 - 10304083 CTTTTATTTGTAATTAa--tatccattcagcatttttaaagcttacaaaatgctt-caagcacattctcattggagttctgtgatttgtaaaacaggcatgtgaaaa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470310 104 - 107702431 CTTTTATTTGTAATTAA--TATCCATTCAGCATTTTTAAAGCTTACAAAATGCTT-CAAGCACATTCTCATTGGAGTTCTGTGATTTGTAAAACAGGCATGTGAAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014207 104 + 1565135 CTTTTATTTGTAGTTAa--tatccattcagcatttttaaagcttacaaaatgctt-caagcacattctcattggagttctgtgatttgtaaaacaggcatgtgaaaa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378622 104 - 13651311 CTTTTATTTGTAATTAa--tatgcattcagcatctttaaagcttacaaaatgctt-caagcacattctcattggagttccgtgatttgtaaaacaggcatgtgaaaa i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466330 83 - 108792865 C-----------------------ATTCagcatttttaaagcttacagaatgctt-caagtccattctcattggagtttcatgacttgtaatacaggcaggcggaaa i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114652 101 - 7082604 C---TATTTGTAATTAA--TATCTGTTCAGCGTTTTTAAAGCTCATAGAATGCTT-CAAGTACATTCTCATAGGAGTTTCATGACTTGTAATACAGGCATGTGAAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600345 101 + 5243153 C---TATTTGTGATTAA--TATCCATTCagcatttttaaagcttacagaatgctt-caagtacattctcattggagtttcatgacttgtaatacaggcaTGTGAAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1936651 101 - 1938448 C---TATTTGTAATTAA--TATCCATTCagcatttttaaagctcacagaatgctt-caagtacattctcattggagtttcatgacttgtaatacaggcatgtgaaaa i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 966549 104 + 1238772 CTCTTACTTGTAATTAA--TCTTCATTCAGCACTTTTAAAGTTTACAAAACACTT-CAAATATATTCTCACTGGCGTTCCATAATTAGTAATATGGGCATGTGAAAA i proCoq1.NW_012151163v1 C 0 I 1794 s otoGar3.GL873658 2545319 91 + 5252280 CTTTTATTTGTAATCAGTCTCTTTATTAAGCATTTTTAAAGTTTACGAA--CTCT-TAGTTGTGTTCTCATTGGAGTTCTA-----------ATAGGCATATGAA-- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91421998 96 - 120129022 C------ATGTAATTAA--TTTTCCCTCGGCACTTTTAAAGTTTACAAAACACTA-TAAGTACATTCTCCATGGAGCCCCACAGTCTGTAATGCTGAC--GAGAACA i mm10.chr12 C 0 I 4 s dasNov3.JH580157 577284 105 + 2232271 CTCTTACTTGTAATTAA--TATTCATTTATGACTtttaaagtttacaaaatacttccaagtacattctcatttgatcctcacaatttgtactctagtcatgtaaaag i dasNov3.JH580157 I 543 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e canFam3.chr17 2047157 73 + 64289059 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=1272663.000000 s hg38.chr2_KI270769v1_alt 62441 150 + 120616 -----aatgggaagctaag----gaaataggaattcagaaaaggtacactgaaggtacgctgaaggtcagcctgaacttgaacccacgtcttctggcaccggacatccct--gttcttgtca-ctgcg---gcactttgcTCTGTGTGTGGAAAGCGTGAAGGG-C s panTro5.chr2A 3524393 150 + 111504155 -----aatgggaagctaag----gaaataggaattcagagaaggtacactgaaggtacgctgaaggtcagcctgaacttgaacccacgtcttctggcaccggacatccct--gttcttgtca-ctgcg---gcactttgcTCTGTGTGTGGAAAGTGTGAAGGG-C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385137 150 + 114371477 -----aatgggaagctaag----gaaataggaattcagagaaggtacgctgaaggtacgctgaaggtcagcctgaacttgaacccacgtcttctggcaccggacatccct--gttcttgtca-ctgcg---gcactttgcTCTGTGTGTGGAAAGTGTGAAGGG-C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 262930 150 + 637652 -----aatgggaagctaag----gaaataggaattcagagaaggtacactgaaggtacgctgaaggtcagcctgaacttgaacccacgtcttctggcaccggacatccct--gttcttgtca-ctgcg---gcactttgcTCTGTGTGTGGAAAGCGTGAAGGG-C i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3322064 139 + 108979918 -----aattggaagctaag----gaaataggaattcagagaaggtaca-----------ctgaaagtcagcctgaacttgaacccacgccttctggcaccgaacgtccct--gttctcgtca-ctgca---gcactttgcTCTGTGTGTGGAAAGCGTGAAGGG-C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033200 139 - 111193037 -----AATTGGAAGCTAAG----GAAATAGGAATTCAGAGAAGGTACA-----------CTGAAAGTCagcctgaacttgaacccacgccttctggcaccgaacgtccct--gttctcgtca-ctgca---gcactttgctcTGTGTGTGGAAAGCGTGAAGGG-C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426142 139 + 3644372 -----aattggaagctaag----gaaataggaattcagagaaggtaca-----------ctgaaagtcagcctgaacttgaacccacgccttctggcaccgaacgtccct--gttctcgtca-ctgca---gcactttgcTCTGTGTGTGGAAAGCGTGAAGGG-C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381508 139 - 10304083 -----aattggaagctaag----gaaataggaattcagagaaggtaca-----------gtgaaagtcagcctgaacttgaacccacgccttctggcaccgaacgtccct--gttctcgtca-ctgca---gcactttgcTCTGTGTGTGGAAAGCATGAAGGG-C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470414 139 - 107702431 -----AATCGGAAGCTAAG----GAAATAGGAATTCAGAGAAGGTACA-----------CTGAAAGTCagcctgaacttgaacccacgccttctggcaccgaacatccct--gttctcgtca-ctgca---gcactttgctcTGTGTGTGGAAAGCGTGAAGGG-C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014311 139 + 1565135 -----aattggaagctaag----gaaataggaattcagagaaggtaca-----------gtgaaagtcagcctgaacttgaacccacgccttctggcaccgaacgtccct--gttctcgtca-ctgca---gcactttgcTCTGTGTGTGGAAAGCGTGAAGGG-C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378726 141 - 13651311 -----aattggaagctaag----gaaataggaattcagagaaggtaca-----------ctgaaagtcagcctgaacttgaacccacgccttctggcaccaaacatccctgagttctcgtca-ctgca---gcactttgcTCTGTGTGTGGAAAGCGTGAAGGG-C i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466413 136 - 108792865 -----agttggaacataag----gaaataggaagtcagagaaggcaca-----------ctgacagtcagcctgaactggaacccacgccttctggtcggggacatccct--gttcttgtca-ctgca---gcacTTCAC--TGTGTGTAGAAAACGTGAAGGG-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114753 136 - 7082604 -----AGTTGGAAGCTAAG----GAAATAGGAAGTCAGAGAAGGCACA-----------CTGAAAGTCAGCCTGAACTGGAACCCACGTCTTCTGGTCGGGAACATCCCC--GTTCTTGTCA-CCGTA---GCACTTTGC--TGTGTGTAGAAAGTGCGCAGGG-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600446 136 + 5243153 -----AGTTGGAAGCTGAG----GAAATAGGATGTCAGAGAAGGCACA-----------CTGAAAGTCAGCCTGCACTGGAGCCCACGTCTTCTGGCCGGGAACATCCCC--GTTCTTGTCA-CTCCA---GCACTTTGC--TGTGTGTAGAAAGCACGAAGGG-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1936752 134 - 1938448 -----agttggaagctaag----gaaataggaagtcagagaaggcacg-----------cggaaagtcagcctgaactggaacccacgtctcctggtcgggaacatccct--gttcttgtca-ctgca---gcactttgc----TGTGTAGAAAGCGCGAAGGG-- i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2545410 132 + 5252280 -----AATAGGAAACTGAG----GAAATAAAAATTTGGAGAAGATA-G-----------CCAGAGGTCAGCCTGAACTTGAACCTGCATCTTCTGGTGCCAAACACCTGT--GTTCT--------GTG---CCACTTTGCTCTGCACACAGAAGGCACAAGGGGAC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91422098 131 - 120129022 -----GTTGGGGCGTCCAGGTGAGAAATAGACATT-AGAGATGATAAG-----------CTTAA-GTCATCCTGGACCTGAAGCAGCATCTCACGG---------TGCCT--GGAGTTACCA-CTGCGCCTGTGCCTCACTC----CACCAAAGGCAGGAAGGG-C i mm10.chr12 I 4 I 2208 s dasNov3.JH580157 577389 144 + 2232271 tgtggcatttacagctaag----gaaatagaaatttagagaggttaag-----------gttaaagtcagccagtacttgaacccaactcttctgatacc-aagataatt--gttctttttatttgca---ccactttgccCTACAGATAGAAAACATGAAATG-C i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=674350.000000 s hg38.chr2_KI270769v1_alt 62591 68 + 120616 CCCTGCAAATGGACATGATGctgcctcctccac-aggtttatttttgtgaaa-tcaaacagaata---------------------------------ctgtt s panTro5.chr2A 3524543 68 + 111504155 CCCTGCAAATGGGCATGATGCTGCCTCCTCCAC-AGGTTTATTTTTGTGAAA-TCAAACAGAATA---------------------------------CTGTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385287 68 + 114371477 CCCTGCaaatgggcatgatgctgcctcctccac-aggtttatttttgtgaaa-tcaaacagaata---------------------------------ctgtt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263080 68 + 637652 CCCTGCAAATGGGCATGATGCTGCCTCCTCCAC-AGGTTTATTTTTGTGAAA-TCAAACAGAATA---------------------------------CTGTT i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3322203 68 + 108979918 CCCTGCaaatgggcatgatgctgcctcctccac-aggtttatttttgtgaaa-tcaaacagaata---------------------------------ctgtt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033339 68 - 111193037 CCCTGCAAATGGGCATGATGCTGCCTCCTCCAC-AGGTTTATTTTTGTGAAA-TCAAACAGAATA---------------------------------CTGTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426281 68 + 3644372 CCCTGCAAATGGGCATGATGCTGCCTCCTCCAC-AGGTTTATTTTTGTGAAA-TCAAACAGAATA---------------------------------CTGTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381647 68 - 10304083 CCCTGCAAATGGGCATGATGCTGCCTCCTCCAC-AGGTTTATTTTTGTGAAA-TCAAACAGAATA---------------------------------CTGTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470553 68 - 107702431 CCCTGCAAATGGGCATGATGctgcctcctccac-aggtttatttttgtgaaa-tcaaacagaata---------------------------------ctgtt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014450 68 + 1565135 CCCTGCAAATGGGCACGATGCTGCCTCCTCCAC-AGGTTTATTTTTGTGAAA-TCAAACAGAATA---------------------------------CTGTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378867 68 - 13651311 CCCTGCaaatgggcatgatgctgcctcctccac-aggcttatttttgtgaaa-tcaaacagaata---------------------------------ctgtt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466549 68 - 108792865 CCCTGCACATAGGCACGATGCTGCCTCCGCCAC-AGGTTGATTTTTGTGAAA-TCAAACAGAATG---------------------------------CTGTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114889 68 - 7082604 CCCTGCACATGGGCACAATGCTGCCTCCGCCAC-AGGTTTATTTTTGTGAAA-TCAAACAGAACG---------------------------------CTGTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600582 68 + 5243153 CCCTGCACATGGGCACGATGCTGCCTCCACCAC-AGGTTTATTTTTGTGAAA-TCAAACAGAATG---------------------------------CTGTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1936886 68 - 1938448 CCCTGCACATGGGCACGATGCTGCCTCCGCCAC-AGGTTTATTTTTGTGAAA-TCAGACAGAATG---------------------------------CTGTT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2545542 62 + 5252280 TTCTGCACA-GGGTGTGACAGTG-CTTCTCCAC-AGGTT-ATCTCTG---AG-TTAAACGGAACT---------------------------------TTGTC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 577533 103 + 2232271 TTCTCagaatgggcaaaataatgcctactccacaaagtttattattgtaaagcttaaacaaaataTggggagtggaagtggctcaagtagttgagtgtctgct i dasNov3.JH580157 C 0 I 173 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=1420018.000000 s hg38.chr2_KI270769v1_alt 62659 169 + 120616 tgtgCTTAAAAACCATCCTGCGCCCC------------CATCTGTAAAATACATCGTCCCCGGTACTTCCCAGCAGGCG--------CTAAGCACCACCCACACTGCCGGCGCCTGACCAGACAGCTC--CATGGAGCTCCTGACCCAGCTTCAAC------C-CGTCGGGAACAGCTCCCAGGGAATGTGCAGGAA-G s panTro5.chr2A 3524611 169 + 111504155 TGTGCTTAAAAACCATCCTGCGCCCC------------CATCTGTAAAATACATCGTCCCCGGTACTTCCCAGCAGGCG--------CTAAGCACCACCCACACTGCCGGCGCCTGACCAGACAGCTC--CATGGAGCTCCTGACCCAGCTTCAAC------C-CGTCGGGAACAGCTCCCAGGGAATGTGCAGGAA-G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385355 169 + 114371477 tgtgCTTAAAAACCATCCTGCGCCCC------------CATCTGTAAAATACATCGTCCCCGGTACTTCCCAGCAGGCG--------CTAAGCACCACCCACACTGCCGGCGCCTGACCAGACAGCTC--CATGGAGCTCCTGACCCAGCTTCAAC------C-CGTCGGGAACAGCTCCCAGGGAATGTGCAGGAA-G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263148 169 + 637652 TGTGCTTAAAAACCATCCTGCGCCCC------------CATCTGTAAAATACATCGTCCCCAGTACTTCCCAGCAGGCG--------CTAAGCACCACCCACACTGCCGGCGCCTGACCAGACAGCTC--CATGGAGCTCCTGACCCAGCTTCAAC------C-CGTTGGGAACAGCTCCCAGGGAATGTGCAGGAA-G i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3322271 169 + 108979918 tgtgCTTAAAAACCATCCTGCGCCCC------------CATCTGTAAACGACATCGTCCCTGGTACTTCCCAGCAGGCG--------CTAAGCACCGCCCACACTGCCGGCGCCTGACCAGACAGCTC--CACTGAGCTCCTGACCCAGCTTCAAC------C-CGCCGGGAGCAGCTCCCGGGGAATGTGCAGAAA-A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033407 169 - 111193037 TGTGCTTAAAAACCATCCTGCGCCCC------------CATCTGTAAACGACATCGTCCCTGGTACTTCCCAGCAGGCG--------CTAAGCACCGCCCACACTGCCGGCGCCTGACCAGACAGCTC--CACTGAGCTCCTGACCCAGCTTCAAC------C-CGCCGGGAGCAGCTCCCGGGGAATGTGCAGAAA-A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426349 169 + 3644372 TGTGCTTAAAAACCATCCTGCGCCCC------------CATCTGTAAACGACATCGTCCCTGGTACTTCCCAGCAGGCG--------CTAAGCACCGCCCACACTGCCGGCGCCTGACCAGACAGCTC--CACTGAGCTCCTGACCCAGCTTCAAC------C-CGCCGGGAGCAGCTCCCGGGGAATGTGCAGAAA-A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381715 169 - 10304083 TGTGCTTAAAAACCATCCTGCGCCCC------------CATCTGTAAACTACATCGTCCCTGGTACTTCCCAGCAGGCG--------CTAAGCACCGCCCACACTGCCGGCGCCTGACCAGACAGCTC--CACTGAGCTCCTGACCCAGCTTCAAC------C-CACTGGGAGCAGCTCCCGGGGAATGTGCAGAAA-A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470621 169 - 107702431 tgtgCGTAAAAACCATCCTGCGCCCC------------CATCTGTAAACTACATCGTCCCTGGTACTTCCCAGCAGGCG--------CTAAGCACCGCCCACACTGCCGGCGCCTGACCAGACAGCTC--CACTGAGCTCCTGACCCAGCTTCAAC------C-CGCCGGGAGCAGCTCCCGGGAAATGTGCAGAAA-G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014518 169 + 1565135 TGTGCTTAAAAACCATCCTGCGCCCC------------CATCTGTAAACGACATCGTCCCTGGTACTTCCCAGCAGGCG--------CTAAGCACCGCCCACACTGCCGGCGCCTGACCAGACAGCTC--CACTGAGCTCCTGACCCAGCTTCAAC------C-CACTGGGAGCAGCTCCCGGGGAATGTGCAGAAA-A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3378935 175 - 13651311 tgtgCTTAAAAACCATCCTGCGCCCC------------CATCTGTAAACTACATCGTCCCTGGTACTTCCCAGCAGGCG--------CTAAGCACCGCCCACACTGCCGGCGCCCGACCAGACAGCTC--CACTGAGCTCCTGACCCAGCTTCAACCCGCCGC-CGCCGGAAGCAGCTCCCAGGGAATGTGCAGAAA-G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466617 147 - 108792865 TGTGCTTAAAAACCATCCTGGGCCCC------------CATCTGTGAAGTGTATGATCCCTGGTAGTTCCCAGCAGGCG--------CTGAGCACCA-CCACGCTGCCAGGGCCTGACCAGACCACTC--CACGGAGCT------CCAGCTCCGAG------C-AGCTGGGAGC---------------TGCAGGAA-G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3114957 154 - 7082604 TGTGCTTAAAAACTGTCCTGGGCCCC------------CATCTGTAAAGTAC-TCATCCCCGGTAGTTCCCAGCAGGCG--------CTGAGCACCA-CCACTCTGCTGGCGCCTGACCAGACCACACTGCACAGAGCTCCAGACCCAGCTCCAAC------C-AGCTGGGAGC---------------TGCAGGAA-G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600650 153 + 5243153 TGTGCTTAAAAACCATCCTGGGCCCC------------CATCTGTAAAGTACATCATCCCCGGTAGCTCCCAGCAGATG--------CTGAGCACCA-CCACGCTGCCGGCGCCTGCCCAGACCACTC--CACGGAGCTCCTGACCCAGCTCCAAC------C-AGCTGGGAGC---------------TGCAGGAA-G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1936954 154 - 1938448 TGTGCTTAAAAACCATCCTGGGCCCC------------CATCTGTGAAGTACATCATCCCTGGTACTTCCCAGCAGGCG--------CGGAGCACCA-CCACGCTGCCGGCGCCTGACCAGACCACTC--CACGGAGCTCCTGACCCAGCTCCAAC------C-AGCTGGGAGC---------------TGCAGGAAGG i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2545604 161 + 5252280 TGTGCTTAAAAACCACCACGTG-CCA------------CATCTGCAAAAT------------GTGGCTCCCAGTAGCTGCTGCGTTCCTGAGCCCTGTCTGCACGGATGGCA-CGGTGCTCCCAGCTC--CACAGAGCTCTCTGCCCACCTAGAGC------C-AGTTGGGGACAGTG--CGTGTGATGCACAGGGA-G i otoGar3.GL873658 C 0 I 401 s dasNov3.JH580157 577809 181 + 2232271 TGTGCTTCAAAACCATAATATGCCCTAATATGCCCATACATCTTCAAAATGTACAGTTATTAGTAGCTTTTAGCATTTG--------TTAAGCCCTACATGCCCTTGTGGTGCTTTGTTATATAGCTC--CACAGAGCTCTTG-CCCAACTAGGAC------TGTGCCAGGAAAAGCTCCCACAGAAGGCACAGGAA-G i dasNov3.JH580157 I 173 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=207113.000000 s hg38.chr2_KI270769v1_alt 62828 24 + 120616 --GTGCCTCCAACACCCGGCCCTTTC s panTro5.chr2A 3524780 24 + 111504155 --GTGCCTCCAACACCCGGCCCTTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385524 24 + 114371477 --GTGCCTCCAACACCCGGCCCTTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263317 24 + 637652 --GTGCCTCCAACACCCAGCCCTTTC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3322440 23 + 108979918 --GTGCCTCCAACACCC-GCCCTTTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033576 23 - 111193037 --GTGCCTCCAACACCC-GCCCTTTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426518 23 + 3644372 --GTGCCTCCAACACCC-GCCCTTCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381884 24 - 10304083 --GTGCCTCCAACACCCAGCCCTTTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470790 24 - 107702431 --GTGCCTCCAACACCCAGCCCTTTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014687 24 + 1565135 --GTGCCTCCAACACCCAGCCCTTTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379110 24 - 13651311 --GTGCCTCCAACACCCGGCCCTTTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466764 24 - 108792865 --GTGCCTCCAGCACCCGGCGCTTTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3115111 24 - 7082604 --GTGCCTCCAGCACCTGGCGCTTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600803 24 + 5243153 --GTGCCTCCAGCACCCGGCGCTTTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937108 24 - 1938448 --GTGCTTCCAGCACCCGGTGCTTTC i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 577990 25 + 2232271 CTGT-CTTCCAATAAAGGGCCCTTTC i dasNov3.JH580157 C 0 I 3926 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I e otoGar3.GL873658 2545765 401 + 5252280 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=5190.000000 s hg38.chr2_KI270769v1_alt 62852 1 + 120616 T s panTro5.chr2A 3524804 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385548 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263341 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3322463 1 + 108979918 T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033599 1 - 111193037 T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426541 1 + 3644372 T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381908 1 - 10304083 T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470814 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014711 1 + 1565135 T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379134 1 - 13651311 T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3466788 1 - 108792865 C i calJac3.chr14 C 0 I 833 s saiBol1.JH378218 3115135 1 - 7082604 C i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600827 1 + 5243153 T i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937132 1 - 1938448 C i aotNan1.NW_018507213v1 C 0 I 29 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I e dasNov3.JH580157 578015 3926 + 2232271 I e otoGar3.GL873658 2545765 401 + 5252280 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=234551.000000 s hg38.chr2_KI270769v1_alt 62853 29 + 120616 GCCCCTCGGCCCCTGTGGTCACTCTGCCC s panTro5.chr2A 3524805 29 + 111504155 GCCCCTCGGCCCCTGTGGTCACTCTGCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385549 29 + 114371477 GCCCCTCGGCCCCTGTGGTCACTCTGCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263342 25 + 637652 GCCCCTCGGCCCCTGTGG----TCTGCCC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3322464 29 + 108979918 GCCCCTCGGCCCCTGTGGTCACTCTCCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033600 29 - 111193037 GCCCCTCGGCCCCTGTGGTCACTCTCCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426542 29 + 3644372 GCCCCTCGGCCCCTGTGGTCACTCTCCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381909 29 - 10304083 GCCCCTCAGCCCCTGTGGTCACTCTCCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470815 29 - 107702431 GCCCCTTGGCCCCTGTGGTCACTCTCCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014712 29 + 1565135 GCCCCTCAGCCCCTGTGGTCACTCTCCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379135 29 - 13651311 GCCCCTTGGCCCCTGTGGTCACTCTCCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3467622 29 - 108792865 GTCCCTCCGCCCCCGCGGTCACTCTGCCC i calJac3.chr14 I 833 C 0 s saiBol1.JH378218 3115136 29 - 7082604 ACCCCTCTGCCCCAGAGGTCACTCTGCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 600828 29 + 5243153 GCCCCTCTGCCCCCGCGGTCACTCTGCCC i cebCap1.NW_016107454v1 C 0 I 126 s aotNan1.NW_018507213v1 1937162 29 - 1938448 GTCCGTCTGCCCCCGCGGTCACTCTGCCC i aotNan1.NW_018507213v1 I 29 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I e dasNov3.JH580157 578015 3926 + 2232271 I e otoGar3.GL873658 2545765 401 + 5252280 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=108928.000000 s hg38.chr2_KI270769v1_alt 62882 18 + 120616 TCCACAGTCCTTCTGCCC s panTro5.chr2A 3524834 18 + 111504155 TCCACAGTCCTTCTGCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385578 18 + 114371477 TCCACAGTCCTTCTGCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263367 18 + 637652 TCCACAGTCCTTCTGCCC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3322493 15 + 108979918 TCCACAGTC---CTGACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033629 15 - 111193037 TCCACAGTC---CTGACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426571 15 + 3644372 TCCACAGTC---CTGACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381938 15 - 10304083 TCCACAGTC---CTGCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470844 15 - 107702431 TCCACAGTC---CTGCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014741 15 + 1565135 TCCACAGTC---CTGCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379164 15 - 13651311 TCCACAGTC---CTGCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3467651 18 - 108792865 TCTGCAGTCCCTCTGCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3115165 18 - 7082604 TCTGCAGTCCCTCTGCCC i saiBol1.JH378218 C 0 I 408 s cebCap1.NW_016107454v1 600983 18 + 5243153 TCTGCAGCCCCTCTGCCT i cebCap1.NW_016107454v1 I 126 C 0 s aotNan1.NW_018507213v1 1937191 18 - 1938448 TCTGCAGTCCCTCTGCCC i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I e dasNov3.JH580157 578015 3926 + 2232271 I e otoGar3.GL873658 2545765 401 + 5252280 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=283435.000000 s hg38.chr2_KI270769v1_alt 62900 41 + 120616 CTGTGGCTGGTCGCTTACTGCTCTGTGCATCTTCCTGAAGC s panTro5.chr2A 3524852 41 + 111504155 CTGTGGCTGGTCGCTTACTGCTCTGTGCATCTTCCTGAAGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385596 41 + 114371477 CTGTGGCTGGTCGCTTACTGCTCTGTGCATCTTCCTGAAGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263385 41 + 637652 CTGTGGCTCGTCGCTTACTGCTCTGTGCATCTTCCTGAAGC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3322508 41 + 108979918 CCGCAGTCGGTCACTTACTGCCCTATGCATCTTCCTGAAGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033644 41 - 111193037 CCGCAGTCGGTCGCTTACTGCCCTATGCATCTTCCTGAAGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426586 41 + 3644372 CCGCAGTCGGCCGCTTACTGCCCTATGCATCTTCCTGAAGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381953 41 - 10304083 CCGCAGTCGGTCGCTTACTGCCCTGTGCATCTTCCTGAAGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470859 41 - 107702431 CCGCAGTCGGTCGCTTACTGCCCTGTGCATCTTCCTGAAGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014756 41 + 1565135 CCGCAGTCGGTCGCTTCCTGCCCTGTGCATCTTCCTGAAGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379179 41 - 13651311 CCGCAGTTGGTCGCTTACTGCCCTGTGCATCTTTCTGAAGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3467669 41 - 108792865 CTGCTGTCGGTCGATCACCACTCTGTGCATCTTCCTGAAGC i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 601001 41 + 5243153 CTGCTGTTGGTCGATCACCGCTCTGTGCGTCTTCCTGAAGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937209 41 - 1938448 CTGCTGTCGGTCGATCACTGCTCTGTGCGTCTTCCTCAAGC i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e saiBol1.JH378218 3115183 408 - 7082604 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I e dasNov3.JH580157 578015 3926 + 2232271 I e otoGar3.GL873658 2545765 401 + 5252280 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=332987.000000 s hg38.chr2_KI270769v1_alt 62941 44 + 120616 ACTTGGCACTGTTGCCTCATCTCTGTCCTCTTCCTCCTATGCCC s panTro5.chr2A 3524893 44 + 111504155 ACTTGGCACTGTTGCCTCATCTCTGTCCTCTTCCTCCTATGCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385637 44 + 114371477 ACTTGGCACTGTTGCCTCATCTCTGTCCTCTTCCTCCTATGCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263426 44 + 637652 ACTTGGCACTGTTGCCTCCTCTCCGTACTCTTCCTCCTATGCCC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3322549 43 + 108979918 ACCT-GCACTGTTGCCTCATCTTTGTCCTCTTCCTCCTATGCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033685 43 - 111193037 ACCT-GCACTGTTGCCTCATCTTTGTCCTCTTCCTCCTATGCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426627 43 + 3644372 ACCT-GCACTGTTGCCTCATCTTTGTCCTCTTCCTCCTGTGCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3381994 43 - 10304083 ACCT-GCACTGTTGCCTCATCTTTGTCCTCTTCCTCCTATGCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470900 43 - 107702431 ACCT-GCACCGTTGCCTCATCTTTGTCCTCTTCCTCCTATGCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014797 43 + 1565135 ACCT-GCACTGTTGCCTCATCTCTGTCCTCTTCCTCCTATGCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379220 43 - 13651311 ACCT-GCGCTGTTGCCTCATCGCTGTCCTCTACCTCCTACGCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3467710 44 - 108792865 ACTTTGAACTGTCACCTTATCTCTGTCCTCTGCCTCCTAAGCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3115591 44 - 7082604 ACTTGGCAGTGTTGTGGTATCTCTGTCCTCTGCCTCCTACGCCC i saiBol1.JH378218 I 408 C 0 s cebCap1.NW_016107454v1 601042 44 + 5243153 ACTTTGCACTGTCGCCTTAGCTCTGTCCTCTGCCTCCTACGCCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937250 44 - 1938448 ACTTTGCACTGTTGCCTTATCTCTGTCCTCTGCCTCCTACGCCC i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I e dasNov3.JH580157 578015 3926 + 2232271 I e otoGar3.GL873658 2545765 401 + 5252280 I e nomLeu3.chr19 3058896 659 + 81552678 M a score=117502.000000 s hg38.chr2_KI270769v1_alt 62985 11 + 120616 TCGCCTGGGCC s panTro5.chr2A 3524937 11 + 111504155 TCGCCTGGGCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385681 11 + 114371477 TCGCCTGGGCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263470 11 + 637652 TTGCCTGGGCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3059555 11 + 81552678 TCGCATGGGCC i nomLeu3.chr19 M 659 C 0 s rheMac8.chr13 3322592 11 + 108979918 TCGCCTGGGCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033728 11 - 111193037 TCGCCTGGGCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426670 11 + 3644372 TCGCCTGGGCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382037 11 - 10304083 TCGCCTGGGCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470943 11 - 107702431 TCGCCTGGGCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014840 11 + 1565135 TCACCTGGGCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379263 11 - 13651311 TGGCCTGGGCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3467754 11 - 108792865 TCGCCTGGGTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3115635 11 - 7082604 TCGCCTGGGCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601086 11 + 5243153 TCGCCTGGGCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937294 11 - 1938448 TCGCCTGGGCC i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I e dasNov3.JH580157 578015 3926 + 2232271 I e otoGar3.GL873658 2545765 401 + 5252280 I a score=392506.000000 s hg38.chr2_KI270769v1_alt 62996 45 + 120616 CTCAGCAGCTTCCAGCAGGGAGGGTGTGGGTGCAGTGATTTGG--------------------------------AT s panTro5.chr2A 3524948 45 + 111504155 CTCAGCAGCTTCCAGCAGGGAGGGTGTGGGTGCAGTGATTTGG--------------------------------AT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385692 45 + 114371477 CTCAGCAGCTTCCAGCAGGGAGGGTGTGGGTGCAGTGATTTGG--------------------------------AT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263481 45 + 637652 CTCAGCAGCTTCCAGCAGGGAGGGTGTGGGTGCAGTGATTTGG--------------------------------AT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3059566 45 + 81552678 ATCAGCGGCTTCCAGCAGGGAGGATGTGGGTGCAGTGATTCGG--------------------------------AT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3322603 59 + 108979918 CTCAGCGGCTTCCAGCAGGGAGGGTGCGAGTGCAGTGATTCGGCAC------------------CTGTGCTTCATGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033739 59 - 111193037 CTCAGCGGCTTCCAGCAGGGAGGGTGTGAGTGCAGTGATTCGGCAC------------------CTGTGCTTCATGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426681 59 + 3644372 CTCAGCGGCTTCCAGCAGGGAGGGTGTGAGTGCAGTGATTCGGCAC------------------CTGTGCTTCATGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382048 59 - 10304083 CTCAGCGGCTTCCAGCAGGGAGGGTGTGAGTGCAGTGATTTGGCAC------------------CTGTGCTTCAAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3470954 59 - 107702431 CTCAGCGGCTTCCAGCAGGGAGGGTGTGAGTGCAGTGATTTGGTAC------------------ATGTGCTTCAAAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014851 59 + 1565135 CTCAGCGGCTTCCAGCAGGGAGGGTGTGAGTGCAGTGATTCGGCAC------------------ATGTGCTTCAAAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379274 59 - 13651311 CTCAGCGGCTTCCAGCAGGGAGGATGTGGGTGCAGTGATTCGGCAC------------------AAGTGCTTCAAAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3467765 77 - 108792865 CTCAGTGGCTTCCTGCAGGGAAGGTGTGGGCGACGTGATCTGGCACACGGGGTGTTCTGTCAGTCTGTGCTTCATAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3115646 76 - 7082604 CTCAGCAGCTTACTGCA-GGAAGGTATGGGCAACGTGCTCTGGCACATGGGGTGTTCTGTCACCCCGTACTTCATAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601097 77 + 5243153 CTCAGCGGCTTCCTTCAGGGAAGGTGTGGGTGATGTGATCTGGCACATGGGGTGTTCTGTCACCCCGTGCTTCATAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937305 77 - 1938448 CTCAGCGGCTTCCTGCAGGGAAGGTGTGGGCGACGTGATCTGGCTCATGGGGTGTTCTGTCACCCTGTGCTTCTTAT i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2546166 45 + 5252280 CTCAGCTGCCTTCAGAAGGGAGGGGACAGGCACAGTGACTCAA--------------------------------AG i otoGar3.GL873658 I 401 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I e dasNov3.JH580157 578015 3926 + 2232271 I a score=80814.000000 s hg38.chr2_KI270769v1_alt 63041 7 + 120616 CATG-CCC s panTro5.chr2A 3524993 7 + 111504155 CATG-CCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385737 7 + 114371477 CATG-CCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263526 7 + 637652 CATG-CCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3059611 7 + 81552678 CATG-CCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3322662 8 + 108979918 CATGCCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033798 7 - 111193037 CATG-CCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426740 7 + 3644372 CATG-CCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382107 7 - 10304083 CATG-CCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471013 7 - 107702431 CATG-CCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014910 7 + 1565135 CATG-CCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379333 7 - 13651311 CATG-CCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3467842 7 - 108792865 CACA-CCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3115722 7 - 7082604 CATG-CCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601174 7 + 5243153 CGTG-CCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937382 7 - 1938448 CATG-CCC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2546211 7 + 5252280 CACA-GCC i otoGar3.GL873658 C 0 I 1636 s dasNov3.JH580157 581941 7 + 2232271 CATG-CCT i dasNov3.JH580157 I 3926 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I a score=31122.000000 s hg38.chr2_KI270769v1_alt 63048 3 + 120616 CTA s panTro5.chr2A 3525000 3 + 111504155 CTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385744 3 + 114371477 CTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263533 3 + 637652 CTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3059618 3 + 81552678 CTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3322670 3 + 108979918 CTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033805 3 - 111193037 CTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426747 3 + 3644372 CTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382114 3 - 10304083 CTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471020 3 - 107702431 CTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014917 3 + 1565135 CTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379340 3 - 13651311 CTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3467849 3 - 108792865 CTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3115729 3 - 7082604 CTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601181 3 + 5243153 CTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937389 3 - 1938448 CTG i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 581948 3 + 2232271 CTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I e otoGar3.GL873658 2546218 1636 + 5252280 I a score=232130.000000 s hg38.chr2_KI270769v1_alt 63051 22 + 120616 -CTCCTCAGAGCCTCTTCCCAAA s panTro5.chr2A 3525003 22 + 111504155 -CTCCTCAGAGCCTCTTCCCAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385747 22 + 114371477 -CTCCTCAGAGCCTCTTCCCAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263536 22 + 637652 -CTCCTCAGAGCCTCTTCCCAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3059621 22 + 81552678 -ATCCTCAGAGCCTCTTCCCAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3322673 22 + 108979918 -CTCCTCACAGCCTCTTCCCAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033808 22 - 111193037 -CTCCTCACAGCCTCTTCCCAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426750 19 + 3644372 ----CTCACAGCCTCTTCCCAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382117 22 - 10304083 -CTCCTCACAGCCCCTTCCAAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471023 22 - 107702431 -CTCCTCACAGCCTCTTCCCAGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014920 22 + 1565135 -CTCCTCACAGCCTCTTCCAAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379343 22 - 13651311 -CTCCTCACAGCCTCTTCTCAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3467852 22 - 108792865 -CTCCTCACAGCCTCTTCCTGAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3115732 22 - 7082604 -CTCCTCAGAGCCTCTTCCCGAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601184 22 + 5243153 -CTCCTCAGAGCCTCTTCCCGAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937392 22 - 1938448 -CTCCTCAGGGCCTCTCCCCGAA i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2547854 22 + 5252280 -CTTTCCAGAGCATCTTCCAGAA i otoGar3.GL873658 I 1636 C 0 s dasNov3.JH580157 581951 23 + 2232271 TTTTTTCAGAGCACCCTCCAGAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047157 73 + 64289059 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I a score=805147.000000 s hg38.chr2_KI270769v1_alt 63073 80 + 120616 CGAA-CCGGGTGTGGCGTGCTGGG-CCTTTATTCTTCTGGG-ACACAAACACGGGACTGCTGATTGGTCTCTGATATAGACCC s panTro5.chr2A 3525025 80 + 111504155 CGAA-CCGGGTGTGGCGTACTGGG-CCTTTATTCTTCTGGG-ACACAAACACGGGACTGCTGATTGGTCTCTGATATAGACCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385769 80 + 114371477 CGAA-CCGGGTGTGGCGTACTGGG-CCTTTATTCTTCTGGG-ACACAAACACGGGACTGCTGATTGGTCTCTGATATAGACCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263558 80 + 637652 CGAA-CCGGGTATGGCGTGCTGGG-CCATTATTCTTCTGGG-ACACAAACACGGGACTGCTGATTGGTCTCTGATATAGACCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3059643 70 + 81552678 CTAACCCGAGTGAGGCTGCCCGGACCCTTTATTCTTTTGGGAACACAAACCATGGGATGCTG-------------ATAGACCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3322695 80 + 108979918 CGAA-CCGGGTGTGGCGTGCTGGG-CCTTTATTCTTCTGGG-ACACAAACACAGGACTGCTGATTGGTCTCTCACATAGACCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033830 79 - 111193037 CGAA-CCGGGTGTGGCGTGCTGGG-CCTTTATTCTTCTGGG-ACGCAAACACAGGACTGCTGATTGGTCTCTCACATAGA-CC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426769 80 + 3644372 CGAA-CCGGGTGTGGCGTGCTGGG-CCTTTATTCTTCTGGG-ACACAAACACAGGACTGCTGATTGGTCTCTCACATAGACCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382139 80 - 10304083 TGAA-CCGGGTGTGGCGTGCTGGG-CCTTTATTCTTCTGGG-ACACAAACACAGGACTGCTGATTGGTCTCTCACATAGACCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471045 80 - 107702431 TGAA-CCGGGTGTGGCGTGCCGGC-CCTTTATTCTTCTGGG-ACACAAACACAGGACTGCTGAGTGGTCTCTCACATAGACCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1014942 80 + 1565135 TGAA-CCAGGTGTGGCGTGCTGGG-CCTTTATTCTTCTGGG-ACACAAACACAGGACTGCTGATTGGTCTCTCACATAGACCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379365 80 - 13651311 CGAA-CCGGGTGTGGCGTGCTGGG-CCCTTATTCTTCTGGG-ACACAAACACAGGACTGCTGATTGGTCTCTCACATAGACCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3467874 80 - 108792865 TGAG-CTGGGTGTGGTGTGTCAGG-CCTTCATTCTTCTGGG-AAACAAACACAGGACTGCTGATTGGTCTCTGATACAGACCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3115754 80 - 7082604 TGAG-CTGGGCATGGTGTGTTGGG-CCTTTATTCTTCTGGG-ACACAAACACAGGACTGCTGGTTGGTCTCTGATATAGACCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601206 77 + 5243153 TGAG-CTGGGTGTGGTGTGTTGGG-CCTTTA---TTCTGGG-ACACAAACACAAGACTGCTGATTGGTCTCTGATATAGACCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937414 80 - 1938448 TGAG-CTGGGTGTGGTGTGTTGGG-CCTTTATTCTTCTGGG-ACGCGAACACAGGACTGCTGATTGGTCTCTGATATAGACCC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2547876 79 + 5252280 CATT-CTGGGTCTGGTGCGTTGGG-CCTTTATTCTTCTGGG-AAATGCATGCAGGACTGCTAATTAGTGTCTGATTTAGACT- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2047230 77 + 64289059 CAGG-CCAGGGGGTGCATCCTG---CCTTGCTTGTTGTGGA-GAGCAGACCCAGGAGTGCTTGCCAGTGTCTGACCTGGACG- i canFam3.chr17 I 73 C 0 s dasNov3.JH580157 581974 74 + 2232271 TGGG-CTGGGCTCACTTCATCATG-CCTCTATCCTCCTGGG-----AAACACAATACTCCTGATCAGTTTCCAATTTAGAT-- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2654963 1799 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e proCoq1.NW_012151163v1 966653 1794 + 1238772 I a score=2935564.000000 s hg38.chr2_KI270769v1_alt 63153 199 + 120616 TGGAG-TCTGCT-CCTTTTGTCTGGGGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCGCACCACATTTGCAAACGACACACTGTCGGGC-TTTTTTTG-----------CAATAACTGCATTTCCTAAATAATTCAGTCTTTGGATTGAGAACGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATTAATGTACTGTTACTTTATA s panTro5.chr2A 3525105 199 + 111504155 TGGAG-TCTGCT-CCTTTTGTCTGGGGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCGCACCACATTTGCAAACGGCACACTGTCGGGC-TTTTTTTG-----------CAATAACTGCATTTCCTAAATAATTCAGGCTTTGGATTGAGAACGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3385849 200 + 114371477 TGGAG-TCTGCTCCCTTTTGTCTGGGGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCGCACCACATTTGCAAACGGCACACTGTCGGGC-TTTTTTTG-----------CAATAACTGCATTTCCTAAATAATTCAGGCTTTGGATTGAGGACGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263638 199 + 637652 TGGAG-TCTGCT-CCTTTTGTCTGGGGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCGCACCACATTTGCAAACGACACACTGTCGGGC-TTTTTTTG-----------CAATAACTGCATTTCCTAAATAATTCAGGCTTTGGATTGAGAACGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3059713 202 + 81552678 TGGAATTCTGGT-CCTTTTGTCTAGGGCAAAAAGGAACCAAAGGAAGGAAAATCTAGCCG-GCCACATTTGCAAACGACACACTGTCGGGG-CTTTTTTG-----------CAATAAAATACATTCCTAAAATATTCAGGCTTTGGATTGAGAACGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3322775 199 + 108979918 TGGAG-TCTGGT-CCTTTCGTCTGGGGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCGCACCACATTTGCAAACGACACACTGTCGGGC-TTTTTTTG-----------CAATAACTGCATTTCTTAAATAATTCAGGCTTTGGATTGAGAACGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5033909 199 - 111193037 TGGAG-TCTGGT-CCTTTCGTCTGGGGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCGCACCACATTTGCAAACGACACACTGTCGGGC-TTTTTTTG-----------CAATAACTGCATTTCTTAAATAATTCAGGCTTTGGATTGAGAACGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3426849 199 + 3644372 TGGAG-TCTGGT-CCTTTCGTCTGGGGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCGCACCACATTTGCAAACGACACACTGTCGGGC-TTTTTTTG-----------CAATAACTGCATTTCTTAAATAATTCAGGCTTTGGATTGAGAACGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382219 199 - 10304083 TGGAG-TCTGGT-CCTTTTGTCTGGGGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCGCACCACATTTGCAAACGACACACTGTCGGGC-TTTTTTTG-----------CAATAACTGCATTTCTTAAATAATTCAGGCTTTGGATTGAGAACGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471125 200 - 107702431 TGGAG-TCTGGT-CCTTTCGTCTGGGGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCGCACCACATTTGCAAACGACACACTGTCGGGCTTTTTTTTG-----------CAATAACTGCATTTCTGAAATAATTCAGGCTTTGGATTGAGAACGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015022 199 + 1565135 TGGAG-TCTGGT-CCTTTCGTCTGGGGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCGCACCACATTTGCAAACGACACACTGTCGGGC-TTTTTTTG-----------CAATAACTGCATTTCTTAAATAATTCAGGCTTTGGATTGAGAACGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379445 199 - 13651311 TGGAG-TCTGGT-CCTTTCGTCTGGGGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCGCACCACATTTGCAAACGACACACTGTCGGGC-TTTTTTTG-----------CAATAACTGCATTTCCTAAGTAATTCAGGCTTTGGATTGAGAACGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3467954 205 - 108792865 TGGAG-TCCGGT-CCTTTTGTCTGGGGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCATGCCACATTTGCAAACGGCACACTGTCGGGC-TTTTTTTTTTTTTT-----CAATAACTGCATTTCCTAAATAATTCAGGCTTTGGATTGAGAGCGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3115834 208 - 7082604 TGGAG-TCTGGT-CCTTTCGTCTGGGAC-AAAAGGAACCAA--GGAGGAAATTCCAGCCATGCCACATTTGCAGACGACACACTGTCGGGC-TTTTTTTTTTTTTT--TTGCAATAACTGCATTTCCTAAATAATTCAGGCTTTGGATTGAGAGCGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601283 200 + 5243153 TGGAG-TCTGGT-CCTTTCGTCTGGAGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCATGCCACATTTGCAAACGACACACTGTCGGGC-TTTTTTTTG----------CAATAACTGCATTTCCTAAATAATTCAGGCTTTGGATTGAGAGCGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937494 210 - 1938448 TGGAG-TCTGGT-CCTTTCGTCTGGGGC-AAAAGGAACCAA--GGAGGAAATTCCAGCCATGCCACATTTGTAAACGACACGCTGTCGGGC-CtttttttttttttttttGCAATAACTGCATTTCCTAAATAATTCAGACTTTGGATTGAGAGCGTGTCTGTCACTTTCCTTTATAGAAATAACCTTTTGTAAATCAATGTACTGTTACTTTATA i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2656762 197 - 159902609 TGGAC-TCTGGT-CCCTTTGTCCAGGGC-AGAAGGAAGCAG--GGAGGAAATGACAAGCATACCACACTTGCTAACTAAACACTTTCAGGC-TCTTCTTG-----------CAATATCTGCATTTCCTAAATAATTCAAGCTTTGAGTTGGGA--GTGTCTGTCACTTTCCTTTACAGAAATAACCTTTTGTAAATCAACGTGCTGTTACTGTATA i micMur3.chr8 I 1799 C 0 s proCoq1.NW_012151163v1 968447 197 + 1238772 TGGAC-TCTGGT-CCCTTTGTCCAGGGC-AGAAGGAACGAG--GGAGGAAATGACAAGCACACCACATTTGCAAACTAAACACTTTCAAGC-TTTTCTTG-----------CAATATCTGCATTTCCTAAATAATTCACGCTTTGAGTTGAGA--GTGTCTGTCACTTTCCTTTACAGAAATAACCTTTTGTAAATCAGCGTACTGTTGATGTATG i proCoq1.NW_012151163v1 I 1794 C 0 s otoGar3.GL873658 2547955 198 + 5252280 TGGGC-TCTGGT--CCTTTGTCCAGGAC-AGAAGGAAGCAA--GGAGGAAATCACAAGCACACCACATTTGCAAACTAAACACTTTCAGAC-TTTTTTTG-----------CAATATCTGCATTTCCTAAATAATTCAAGCTTTGAGTTGAGAGTGTGTCTGTCACTCTCCTTTACAGAAATAACCTTTTGTCAATCAGCGCACGGTTGCTGCATA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2047307 159 + 64289059 TGGGC-CTCGGT-CATGTTGTCAGGGAC-AG-AGGGATGGA--GAAGGGAAGTGGGACCTTACCACGGTTGCAGACAA----------GAC--------------------C---------------------GTTCAGGCTTCGGGTAGGCAGTGTTTGTGTCACTTTCCTTCACAGAACTACCGCCTTAGAGGTAAGCACACTAGGACTGTACA i canFam3.chr17 C 0 I 424 s dasNov3.JH580157 582048 196 + 2232271 TGGAC-CCTGGT-TGTTTAGTCTGTGAT-GGAAGGAACCAA--TGAGGAAATTGCAACCACCTTACTTTTGCATTCTAAACTACTTCAGGC----TTTTG-----------CAATATCTGCATTTTCTAAGTAATTCAAGGGTTGGGTTAGGAATGTTTCTGTCACTTTCCTTTATAGAAACAACCATTTGTAAATCAAGGTACTGTTACTTTATA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91422229 2208 - 120129022 I a score=629863.000000 s hg38.chr2_KI270769v1_alt 63352 42 + 120616 AAGCCAGACAACTGTCTCTAGATAGACAGCAATAAAAGCTAC s panTro5.chr2A 3525304 42 + 111504155 AAGCCAGACAACTGTCTCTAGATAGACAGCAATAAAAGCTAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386049 42 + 114371477 AAGCCAGACAACTGTCTCTAGATAGACAGCAATAAAAGCTAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263837 42 + 637652 AAGCCAGACAACTGTCTCTAGATAGACAGCAATAAAAGCTAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3059915 42 + 81552678 AAGCCAGACAACTGTCTCTAGATAGACAGCAATAAAAGCTAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3322974 42 + 108979918 AAGCCAGACAACTGTCTCTAGATAGACAGCAATAAAAGCTAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034108 42 - 111193037 AAGCCAGACAACTGTCTCTAGATAGACAGCAATAAAAGCTAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427048 42 + 3644372 AAGCCAGACAACTGTCTCTAGATAGACAGCAATAAAAGCTAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382418 42 - 10304083 AAGCCAGACAACTGTCTCTAGATAGACAGCAACAAAAGCTAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471325 42 - 107702431 AAGCCAGACAACTGTCTCTAGATAGACAGCAATAAAAGCTAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015221 42 + 1565135 AAGCCAGACAACTGTCTCTAGATAGACAGCAACAAAAGCTAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379644 42 - 13651311 AAGCCAGACAACTGTCTCTAGATAGACAGCAATAAAAGCTAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468159 38 - 108792865 AAGCCAGACAACTGTCTC----TAGACAGCAATACAAGCTAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116042 38 - 7082604 AAGCCAGACAACTGTCTC----TAGACAGCAATACAAGCTAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601483 38 + 5243153 AAGCCAGACAACTGTCTC----TAGACAGCAATACAAGCTAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937704 38 - 1938448 AAGCCAGACAACTGTCTC----TAGACAGCAATACAGGCTAC i aotNan1.NW_018507213v1 C 0 C 0 s micMur3.chr8 2656959 42 - 159902609 AAGCCAGACAACTGTCTCCAGATAGACAGTGATAAAAGCTAC i micMur3.chr8 C 0 I 991 s proCoq1.NW_012151163v1 968644 42 + 1238772 AAGCCAGACAACTGTCTCTAGATAGACAGTGATAAAAGCTAC i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2548153 42 + 5252280 AAGCCAGACGACCGTGTCTAGACAGGCAGCAATGAGAGCTAC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 582244 42 + 2232271 AAGCCAGACAGATATCTCTAGAAAGACAACGATAAAAGCTAC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I a score=249185.000000 s hg38.chr2_KI270769v1_alt 63394 18 + 120616 CAACTGTGAACTGCTGTT s panTro5.chr2A 3525346 18 + 111504155 CAACTGTGAACTGCTGTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386091 18 + 114371477 CAACTGTGAACTGCTGTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263879 18 + 637652 CAACTGTGAACTGCTGTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3059957 18 + 81552678 CAACTGTGAACTGCTGTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323016 18 + 108979918 CAACTGTGAACTGCTGTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034150 18 - 111193037 CAACTGTGAACTGCTGTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427090 18 + 3644372 CAACTGTGAACTGCTGTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382460 18 - 10304083 CAACTGTGAACTGCTGTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471367 18 - 107702431 CAACTGTGAACTGCTGTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015263 18 + 1565135 CAACTGTGAACTGCTGTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379686 18 - 13651311 CGACTGTGAACTGCTGTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468197 18 - 108792865 CAACTGTGAACTGCTGTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116080 18 - 7082604 CAACTGTGAACTGCTGTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601521 18 + 5243153 CAACTGTGAACTGCTGTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937742 18 - 1938448 CAACTGTGAACTGCTGTT i aotNan1.NW_018507213v1 C 0 C 0 s proCoq1.NW_012151163v1 968686 18 + 1238772 TAACTGGGAGCTACTGTT i proCoq1.NW_012151163v1 C 0 I 965 s otoGar3.GL873658 2548195 18 + 5252280 GAACTGGGAGTTGCCGCT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 582286 18 + 2232271 TAAGTGCGAATTATTGTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I a score=940742.000000 s hg38.chr2_KI270769v1_alt 63412 85 + 120616 TCTTTTCCTTTCACTCATGGATGCTCTTCTGCATCACACTGGGACCTATCAATTGA---CATTAAATGACACACCCTACAAATAAAAC s panTro5.chr2A 3525364 85 + 111504155 TCTTTTCCTTTCACTCATGGATGCTCTTCTGCATCACACTGGGACCTATTAATTGA---CATTAAATGACACACCCTACAAATAAAAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386109 85 + 114371477 TCTTTTCCTTTCACTCATGGATGCTCTTCTGCATCACACTGGGACCTATTAATTGA---CATTAAATGACACACCCTACAAATAAAAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263897 85 + 637652 TCTTTTCCTTTCACTCATGGATGCTCTTCTGCATCACACTGGGACCTACTAATTGA---CATTAAATGACACATCCTACAAATAAAAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3059975 85 + 81552678 TCTTTTCCGTTCACTCATGGATGATCTTCTGCATCACACTGGGACCTATTAATTGA---CATTAAATGACACCTCCTACAAATAAAAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323034 85 + 108979918 TCTGTTCCGTTCACTCATGGATGCTCTTCTGCATCACACTGGGACCTATTAATTGA---CATTAAATGACACACCCTACAAATGAAAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034168 85 - 111193037 TCTGTTCCGTTCACTCATGGATGCTCTTCTGCATCACACTGGGACCTATTAATTGA---CATTAAATGACACACCCTACAAATGAAAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427108 85 + 3644372 TCTGTTCCGTTCACTCATGGATGCTCTTCTGCATCACACTGGGACCTATTAATTGA---CATTAAATGACACACCCTACAAATGAAAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382478 85 - 10304083 TCTGTTCCGTTCACTCATGGATGCTCTTCTGCATCACACTGGGACCTATTAATTGA---CATTAAATGACACACCCTACAAATGAAAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471385 85 - 107702431 TCTGTTCCGTTCACTCATGGATGCTCTTCTGCATCACACTGGGACCTATTAATTGA---CATTAAATGACACACCCTACAAATGAAAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015281 85 + 1565135 TCTGTTCCGTTCACTCATGGATGCTCTTCTGCATCACACTGGGACCTATTAATTGA---CATTAAATGACACACCCTACAAATGAAAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379704 85 - 13651311 TCTGTTCCGTTCACTCATGGATGCTCTTCTGCATCACACTGGGACCTATTAATTGA---CATTAAATGACACACCCTACAAATGAAAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468215 85 - 108792865 TGTGTCCCGTTCACTCATGGATGCTCTTCTGCACCACACTGGGACCTTTTAATTGA---CATTAAATGACACACCCTGCAAACAAAAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116098 85 - 7082604 TCCGTCCCGTTCACTCGTGGATGCTCTTCTGCACCGCACTGGGACCTTTTAATTGA---CATTAAGTGACACACCCCACAAACAAAAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601539 85 + 5243153 TCTGTCCCGTTCACTCGTGGATGCTCTTCTGCACCGCACTGGGACCTTTTAATTGA---CATTAAATGACACACCCTACAAACAAAAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937760 85 - 1938448 TCTGTCCCATTCACTCATGGATGCTCTTCTGCACCGCACTGGGACCTTTTAATTGA---CATTAAATGACACACCCTACAAACAAAAC i aotNan1.NW_018507213v1 C 0 I 43 s otoGar3.GL873658 2548213 85 + 5252280 CCTGCTCAGTGCACTCGAGGGTGC-CCTCTGGGTTACATT-GGACCTATTAATTGACATCATTATATAATACTCCCTAAAAATAGAA- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 582304 64 + 2232271 TCTCTTTTTGTCACTCAAGGATTCACTTCTAAATCAGCCTGGGACCTATTAACTGATATCATTA------------------------ i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I a score=121108.000000 s hg38.chr2_KI270769v1_alt 63497 12 + 120616 AATAGTCACTGA s panTro5.chr2A 3525449 12 + 111504155 AATAGTCACCGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386194 12 + 114371477 AATAGTCACCGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263982 12 + 637652 AATAGTCACCGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060060 12 + 81552678 AATAGTCGCTGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323119 12 + 108979918 AATAGTCACCGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034253 12 - 111193037 AATAGTCACCGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427193 12 + 3644372 AATAGTCACCGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382563 12 - 10304083 AATGGTCACCGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471470 12 - 107702431 AATAGTCACCAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015366 12 + 1565135 AATAGTCACCGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379789 12 - 13651311 AATAGTCACCGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468300 12 - 108792865 AATAGTCACCAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116183 12 - 7082604 AATACTCACCGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601624 12 + 5243153 AGTAGTCACCGA i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2548298 12 + 5252280 AATGCGCTCTGA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 582368 12 + 2232271 AATAGCCACTGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e aotNan1.NW_018507213v1 1937845 43 - 1938448 I a score=1639446.000000 s hg38.chr2_KI270769v1_alt 63509 166 + 120616 GGGTCAGAAGGTTGTGTCTGATATGCCTATGTTCCTGTC----AACAATAGG--------GGCTTTCTCCAGCTGTCCCCTTCT-CGGGCTGAAGCACCTCAGTGACCCAGATCCCTGCAGGCACT-TG-GCGTCGTT-TTGTGTGTCCCTCTGCCCCAGCCAGGAGAGTGCTTTTTGCAGA s panTro5.chr2A 3525461 166 + 111504155 GGGTCAGAAGGTTGTGTCTGATATGCCTATGTTCCTGTC----AACAATAGG--------GGCTTTCTCCAGCTGTCCCCTTCT-CGGGCTGAAGCACCTCAGTGACCCAGATCCCTGCAGGCACT-TG-GCGTCGTT-TCGTGTGTCCCTCTGCCCCAGCCAGGAGAGTGCTTTTTGCAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386206 166 + 114371477 GGGTCAGAAGGTTGTGTCTGATATGCCTATGTTCCTGTC----AACAATAGG--------GGCTTTCTCCAGCTGTCCCCTTCT-CGGGCTGAAGCACCTCAGTGACCCAGATCCCTGCAGGCACT-TG-GCGTCGTT-TCGTGTGTCCCTCTGCCCCAGCCAGGAGAGTGCTTTTTGCAGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 263994 166 + 637652 GGGTCAGAAGGTTGTGTCTGATATGCCTATGTTCCTGTC----AACGATAGG--------GGCTTTCTCCAGCTGTCCCCTTCT-GGGGCTGAAGCACCTCAGTGACCCAGATCCCTGCAGGCACT-TG-GCGTCGTT-TCATGTGTCCCTCTGCCCCAGCCAGGAGAGTGCTTTTTGCAGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060072 166 + 81552678 GGGTCAGAAGGTTGTGTCTGATATGCCTGTGTTCGTGTC----AACAATAGG--------GGCTTTCTCCAGCTGTCCCTTTCT-CGGGCTGAAGCACCTCAGTGACCCAGATCCCTGCAGGCACT-TG-GCGTCGTT-CCATGCGTCCCTCTTCCCCAGCCAGGAGAGTGCTTTTTGCAGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323131 166 + 108979918 GGGTCAGAGGGTCGTGTCTGATGTGCCTATGCTCATGTC----AACAATAGG--------TGCCTTCTCCAGCTGTCCCTTTCT-CGGGCTGAAGCACCTCAGTGACCCAGATCCCTGCAGGCACT-TG-GCATCGTT-GTGTGCGTCCCTCCGCCCCAGCCAGGAGAGTGCTTTTTGCAGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034265 166 - 111193037 GGGTCAGAGGGTCGTGTCTGATGTGCCTATGCTCATGTC----AACAATAGG--------TGCCTTCTCCAGCTGTCCCTTTCT-CGGGCTGAAGCACCTCAGTGACCCAGATCCCTGCAGGCACT-TG-GCATCGTT-GTGTGCGTCCCTCCTCCCCAGCCAGGAGAGTGCTTTTTGCAGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427205 166 + 3644372 GGGTCAGAGGGTCGTGTCTGATGTGCCTATGCTCGTGTC----AACAATAGG--------TGACTTCTCCAGCTGTCCCTTTCT-CGGGCTGAAGCACCTCAGTGACCCAGATCCCTGCAGGCACT-TG-GCATCGTT-CTGTGCGTCCCTCCGCCCCAGCCAGGAGAGTGCTTTTTGCAGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382575 166 - 10304083 GGGTCAGAGGGTTGTGTCTGATGTGCCTATGCTCGTGTC----AACAATAGG--------TGCCTTCTCCAGCTGTCCCTTTCT-CGGGCTGAAGCACCTCGGTGACCCAGATCCCTGCAGGCACT-TG-GCATCATT-CTGTGCGTCCCTCCGCCCCAGCCAGGAGAGTGCTTTTTGGAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471482 166 - 107702431 GGGTCAGAGGGTCGTGTCTGATGTGCCTATGCTCATGTC----AACAATAGG--------TGCCTTCTCCAGCTGTCCCTTTCT-CGGGCTGAAGCACCTCGGTGACCCAGATCCCTGCAGGCACT-TG-GCATCATT-CTGTGCGTCCCTCCGCCCCAGCCAGGAGAGTGCTTTTTGCAGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015378 166 + 1565135 GGGTCAGAGGGTTGTGTCTGATGTGCCTATACTCGTGTC----AACAATAGG--------TGCCTTCTCCAGCTGTCCCTTTCT-CGGGCTGAAGCACCTCAGTGACCCAGATACCTGCAGGCACT-TG-GCATCGTT-GTGTGCGTCCCTCCGCCCCAGCCAGGAGAGTGCTTTTTGCAGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379801 165 - 13651311 GGGTCGGAGGGTCGTGTCTGATGTGCCTATGCTCGTGTC----AACAATAGG--------TGCCGTCTCCAGCTGTCCCTTTCT-CGGG-TGAAGCAGCTCGGTGACCCAGATCCCTGCAGGCACT-TG-GCATCGTT-CTGCGCGTCCCTCTGCCCCAGCCAGGAGAGTGCTTTTTGCAGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468312 158 - 108792865 GGATCAGAGGGTTGTGTCTGATGTGCCTGTGCTGGTGTC----AGTGATAGG--------TGCCTTCTCTAGCTGTCCCTTCCT-CGGGCCGCAGCACCTCAGTGACTCAGATACCTGCAGGCACT-TGTGCATC---------CATCCCTCTGCCCCAGCCAGGA-GGTGCTTTTTTCAGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116195 166 - 7082604 GGCTCAGAAGGTTGTGTCTGATGTGCCTGTGCTCGTGTC----GATGATCGG--------TGCCTTCTCCAGCTGTCCCTTCCT-CGGGCTGCAGCACCTCCATGACTCAGGTCCCTGCAGGCACT-TG-GCGTCATT-CTGTGCACCCCTCTGCCCCAGCCAGGAGGGTGCTTTTTTCAGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601636 166 + 5243153 GGATCAGAAGGTTGTGTCTGATGTGCCTGTGCTCATGTC----AATGATTGG--------TGCCTTCTCCAGCTGTCCCTTCCT-CAGGCTGCAGCACCTCAGTGACTTAGGTCCCTGCAGACACT-TG-GCGTCGTT-CTGTGCATCCCTCTGCCCCAGCCAGGAGGGTGCTTTTTTCAGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1937888 166 - 1938448 AGATCAGAAGGCTGTGTCTGAGGTGCCTGTGCTCATGTC----ATTGATAGG--------TGCCTTCTCCAGCTGTCCCTTCCT-CGGGCTGCAGCACCTCAGTGACTCAGATCCCTGCAGGCACT-TG-GCATCGTT-CTGTGCATCCCTCTGCCCCAGCCAGGAGGGTGCTTTTTTCAGA i aotNan1.NW_018507213v1 I 43 C 0 s otoGar3.GL873658 2548310 128 + 5252280 GGAGCAGAAAGGCACAGCCAGCGCGTCTGCGCGCC--TC----TGCAAT-GT--------CCCCTTCCCCAGCTGTCTCGCCCTCCGAGCTGAAGCACTTTGGTGACCCAGATCCT--------------GC--------------TGCCTCACCCCCAGCCCG-----------TTGGAGT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 582380 177 + 2232271 GGATGAGGAAATTTCATTTAAAACATTTATGTACCTTTCTTTTAGGAATAAGTTCTCTCCTGTCTTTTCTAGCTGTTTCTA----AGTGCTAAAGCACTTAACGAGCCCAGGTCCCTGAAGACATTCCA-TCACCATTCCTGTGCTTACTTCACCCCCAACCTCAGAAAGGGCTGCTAGAGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I a score=13600.000000 s hg38.chr2_KI270769v1_alt 63675 1 + 120616 G s panTro5.chr2A 3525627 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386372 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264160 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060238 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323297 1 + 108979918 G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034431 1 - 111193037 G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427371 1 + 3644372 G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382741 1 - 10304083 G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471648 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015544 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379966 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116361 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601802 1 + 5243153 G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938054 1 - 1938448 G i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2548438 1 + 5252280 G i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 582557 1 + 2232271 G i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e calJac3.chr14 3468470 0 - 108792865 C a score=22035.000000 s hg38.chr2_KI270769v1_alt 63676 2 + 120616 GG s panTro5.chr2A 3525628 2 + 111504155 GG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386373 2 + 114371477 GG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264161 2 + 637652 GG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060239 2 + 81552678 GG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323298 2 + 108979918 GG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034432 2 - 111193037 GG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427372 2 + 3644372 GG i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3471649 2 - 107702431 GG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015545 2 + 1565135 GG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379967 2 - 13651311 GG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468470 2 - 108792865 GG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116362 2 - 7082604 GG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601803 2 + 5243153 GG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938055 2 - 1938448 GG i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 582558 2 + 2232271 GA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e otoGar3.GL873658 2548439 0 + 5252280 C e cerAty1.NW_012000820v1 3382742 0 - 10304083 C a score=9555.000000 s hg38.chr2_KI270769v1_alt 63678 1 + 120616 A s panTro5.chr2A 3525630 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386375 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264163 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060241 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323300 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034434 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427374 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3471651 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3379969 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468472 1 - 108792865 A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116364 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601805 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938057 1 - 1938448 A i aotNan1.NW_018507213v1 C 0 C 0 s dasNov3.JH580157 582560 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e otoGar3.GL873658 2548439 0 + 5252280 C e manLeu1.NW_012104432v1 1015547 0 + 1565135 C e cerAty1.NW_012000820v1 3382742 0 - 10304083 C a score=388982.000000 s hg38.chr2_KI270769v1_alt 63679 44 + 120616 GGGGTGTAGC-CTGCCTGGTGTCTCCGTGTCCTACCTGTGTGCCC s panTro5.chr2A 3525631 44 + 111504155 GGGGTGTAGC-CTGCCTGGTGTCTCCGTGTCCTACCCGTGTGCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386376 44 + 114371477 GGGGTGTAGC-CTGCCTGGTGTCTCCGTGTCCTACCCGTGTGCCC i panPan2.chr2A C 0 T 47 s gorGor5.CYUI01015435v1 264164 44 + 637652 GGGGTGTAGC-CTGCCTGGTGTCTTCGTGTCCTACCCATGTGCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060242 44 + 81552678 GGGGTGTAGC-CTGCCTGGTGTCTCCGTCTCCTACCCATGTGCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323301 44 + 108979918 GGGGTGTAGC-CTGCCTGGTGTCTCCGTCTCCTACCCCTGCGCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034435 44 - 111193037 GGGGTGTAGC-CTGCCTGGTGTCTCCGTCTCCTACCCCTGCGCCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427375 44 + 3644372 GGGGTGTAGC-CTGCCTGGTGTCTCCGTGTCCTACCCATGTGCCC i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3471652 44 - 107702431 GGGGTGTAGC-CTGCCTGGTGTCTCCGTGTCCTACCCATGTGCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015547 44 + 1565135 GGGGTGTAGC-CTGCCTGGTGTCTCCATCTCCTACCCCTGCACCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3379970 44 - 13651311 GGGGTGTAGC-CTGCCTGGCGTCTCCGTGTCCTACCCATGTGCCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468473 43 - 108792865 GGGGTGTGGC-CTG-CTGGTGTCTCCGTGTCCGACCCATGCGCCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116365 43 - 7082604 GGGATGTGGC-CTG-CTGGTGTCTCCGTGTCCGACCCGTGCGCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601806 43 + 5243153 GGGATGTGGC-CTG-CTGGTGTCTCTGTGTCCTACCCCTGTGCCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938058 43 - 1938448 GGGATGTAGC-CTG-CTGGTGTCTCCGTGTCCAACCCGTGTGCTC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2548439 34 + 5252280 -----------CTGTTTGGGGTCTCCATCCCTTATCCATGTGGCC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 582561 44 + 2232271 GAACTGTAACTCTGCTTGATA-CTCCACCTCATATCTGCGTACCT i dasNov3.JH580157 C 0 I 2 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e cerAty1.NW_012000820v1 3382742 0 - 10304083 C a score=115753.000000 s hg38.chr2_KI270769v1_alt 63723 16 + 120616 TCCCAGCTGGGTAGGT s panTro5.chr2A 3525675 16 + 111504155 TCCCAGCTGGGTAGGT i panTro5.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264208 16 + 637652 TCCGAGCTGGGTAGGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060286 16 + 81552678 TCCCAGCTGGGTAGGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323345 16 + 108979918 TCCCAGCTGGGTGGGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034479 16 - 111193037 TCCCAGCTGGGTGGGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427419 16 + 3644372 TCCCAGCTGGGTAGGT i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3471696 16 - 107702431 TCCCAGCTGGGAAGAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015591 16 + 1565135 TCCCAGCTGGGTGGGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380014 16 - 13651311 TTTCAGCTGGGTGGGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468516 16 - 108792865 GGGCAGCTGCGTAGGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116408 16 - 7082604 TCCCAGCTGAGTAGGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601849 13 + 5243153 TCCCAGCTGGGTA--- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938101 16 - 1938448 TCCCAACTGGGTAGAC i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2548473 14 + 5252280 --TCAGCTGTGTAGAT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 582607 16 + 2232271 TCCAACCTGTGTAGAT i dasNov3.JH580157 I 2 I 289 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e cerAty1.NW_012000820v1 3382742 0 - 10304083 C e panPan2.chr2A 3386420 47 + 114371477 T a score=7397.000000 s hg38.chr2_KI270769v1_alt 63739 1 + 120616 G s panTro5.chr2A 3525691 1 + 111504155 G i panTro5.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264224 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060302 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323361 1 + 108979918 G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034495 1 - 111193037 G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427435 1 + 3644372 G i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3471712 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015607 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380030 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468532 1 - 108792865 G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116424 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1938117 1 - 1938448 A i aotNan1.NW_018507213v1 C 0 C 0 s otoGar3.GL873658 2548487 1 + 5252280 G i otoGar3.GL873658 C 0 I 99 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e cebCap1.NW_016107454v1 601862 0 + 5243153 C e cerAty1.NW_012000820v1 3382742 0 - 10304083 C e panPan2.chr2A 3386420 47 + 114371477 T a score=36024.000000 s hg38.chr2_KI270769v1_alt 63740 5 + 120616 GGTCT s panTro5.chr2A 3525692 5 + 111504155 GGTCT i panTro5.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264225 5 + 637652 GGTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060303 5 + 81552678 GGTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323362 5 + 108979918 GGTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034496 5 - 111193037 GGTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427436 5 + 3644372 GGTCT i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3471713 5 - 107702431 GGTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015608 5 + 1565135 GGTCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380031 5 - 13651311 AGTCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468533 5 - 108792865 GGTCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116425 5 - 7082604 GGTCT i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1938118 5 - 1938448 GGTCT i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e cebCap1.NW_016107454v1 601862 0 + 5243153 C e cerAty1.NW_012000820v1 3382742 0 - 10304083 C e panPan2.chr2A 3386420 47 + 114371477 T a score=21000.000000 s hg38.chr2_KI270769v1_alt 63745 2 + 120616 GG s panTro5.chr2A 3525697 2 + 111504155 GG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386373 2 + 114371477 GG i panPan2.chr2A T 47 C 0 s gorGor5.CYUI01015435v1 264230 2 + 637652 GG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060308 2 + 81552678 GG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323367 2 + 108979918 GG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034501 2 - 111193037 GG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427441 2 + 3644372 GG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382742 2 - 10304083 GG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471718 2 - 107702431 GG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015613 2 + 1565135 GG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380036 2 - 13651311 GG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468538 2 - 108792865 GG i calJac3.chr14 C 0 T 70 s saiBol1.JH378218 3116430 2 - 7082604 GG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1938123 2 - 1938448 GG i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e cebCap1.NW_016107454v1 601862 0 + 5243153 C a score=5362.000000 s hg38.chr2_KI270769v1_alt 63747 1 + 120616 A s panTro5.chr2A 3525699 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386375 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264232 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060310 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323369 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034503 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427443 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382744 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471720 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015615 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 T 69 s colAng1.NW_012118821v1 3380038 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116432 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1938125 1 - 1938448 G i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e cebCap1.NW_016107454v1 601862 0 + 5243153 C e calJac3.chr14 3468540 70 - 108792865 T a score=464234.000000 s hg38.chr2_KI270769v1_alt 63748 59 + 120616 GGGGTGTAGCCTGCCTGGTGTCTCCATGTCCTACCCCTGCGCCTTCCCAGCTGGGTAGG s panTro5.chr2A 3525700 59 + 111504155 GGGGTGTAGCCTGCCTGGTGTCTCCGTGTCCTACCCGTGTGCCCTCCCAGCTGGGTAGG i panTro5.chr2A C 0 T 69 s panPan2.chr2A 3386376 59 + 114371477 GGGGTGTAGCCTGCCTGGTGTCTCCGTGTCCTACCCGTGTGCCCTCCCAGCTGGGTAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264233 59 + 637652 GGGGTGTAGCCTGCCTAGTGTCTCCATATCCTACCCCTGCGCCTTCCCAGCTGGGTAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060311 57 + 81552678 GGGATGTAG-CTGCCTGGTGTCTCCGTCTCCTACCCGTGTGCC-TCCCAGCTGGGTAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323370 59 + 108979918 GGGGTGTAGCCTGCCTGGTGTCTCCGTCTCCTACCCCTGCGCCTTCCCAGCTGGGTGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034504 59 - 111193037 GGGGTGTAGCCTGCCTGGTGTCTCCGTCTCCTACCCCTGCGCCTTCCCAGCTGGGTGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427444 59 + 3644372 GGGGTGTAGCCTGCCTGGTGTCTCCGTGTCCTACCCCTGTGCCTTCCCAGCTGGGTGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382745 59 - 10304083 GGGGTGTAGCCTGCCTGGTGTCTCCGTCTCCTACCCCTGCACCTTCCCAGCTGGGTGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471721 59 - 107702431 GGGGTGTAGCCTGCCTGGTGTCTCTGTCTCCTACCCCTGCGCCTTCCCAGCTAGGTAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015547 59 + 1565135 GGGGTGTAGCCTGCCTGGTGTCTCCATCTCCTACCCCTGCACCTTCCCAGCTGGGTGGG i manLeu1.NW_012104432v1 T 69 C 0 s colAng1.NW_012118821v1 3380039 59 - 13651311 GGGGTGTAGCCTGCCTGGTGTCTCCATCTCCTACCCCTGCGCCTTCCCAACTGGGTAGG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116433 58 - 7082604 GGGATGTGGCCTG-CTGGTGTCTCTGTGTCCTACCCATGTGCCTTTGAAGCTGGGCAGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601862 56 + 5243153 --GATGTGGCCTG-CTGGTGTCCCTGTGTCCAACCTGTGCGCCCTCCCATCTGGGTAGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938126 58 - 1938448 GGGATGTGGCCTG-CTGGTGTCTCTGTGTCCGACCCGTGCGCCCTCCTAGCTGGGTAGG i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e calJac3.chr14 3468540 70 - 108792865 T a score=64087.000000 s hg38.chr2_KI270769v1_alt 63807 7 + 120616 TGGGTCT s panTro5.chr2A 3525690 7 + 111504155 TGGGTCT i panTro5.chr2A T 69 C 0 s panPan2.chr2A 3386435 7 + 114371477 TGGGTCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264292 7 + 637652 TGGGTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060368 7 + 81552678 TGGGTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323429 7 + 108979918 TGGGTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034563 7 - 111193037 TGGGTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427503 7 + 3644372 TGGGTCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382804 7 - 10304083 TGGGTCT i cerAty1.NW_012000820v1 C 0 T 69 s chlSab2.chr14 3471780 7 - 107702431 TGGGTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015606 7 + 1565135 TGGGTCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380098 7 - 13651311 TGGGTCT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116491 7 - 7082604 TGGGTCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601918 7 + 5243153 CAGGTCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938184 7 - 1938448 CAGGTCT i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e calJac3.chr14 3468540 70 - 108792865 T a score=21000.000000 s hg38.chr2_KI270769v1_alt 63814 2 + 120616 GG s panTro5.chr2A 3525697 2 + 111504155 GG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386442 2 + 114371477 GG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264299 2 + 637652 GG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060375 2 + 81552678 GG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323436 2 + 108979918 GG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034570 2 - 111193037 GG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427510 2 + 3644372 GG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382742 2 - 10304083 GG i cerAty1.NW_012000820v1 T 69 C 0 s chlSab2.chr14 3471787 2 - 107702431 GG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015613 2 + 1565135 GG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380105 2 - 13651311 GG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116498 2 - 7082604 GG i saiBol1.JH378218 C 0 T 121 s cebCap1.NW_016107454v1 601925 2 + 5243153 GG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938191 2 - 1938448 GG i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e calJac3.chr14 3468540 70 - 108792865 T a score=5362.000000 s hg38.chr2_KI270769v1_alt 63816 1 + 120616 A s panTro5.chr2A 3525699 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386444 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264301 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060377 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323438 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034572 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427512 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382744 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471789 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015615 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 T 69 s colAng1.NW_012118821v1 3380107 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 601927 1 + 5243153 G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938193 1 - 1938448 G i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e saiBol1.JH378218 3116500 121 - 7082604 T e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e calJac3.chr14 3468540 70 - 108792865 T a score=92711.000000 s hg38.chr2_KI270769v1_alt 63817 15 + 120616 GGGGTGTAGCCTGCC s panTro5.chr2A 3525700 15 + 111504155 GGGGTGTAGCCTGCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386445 15 + 114371477 GGGGTGTAGCCTGCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264302 15 + 637652 GGGGTGTAGCCTGCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060378 14 + 81552678 GGGGTGTAG-CTGCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323439 15 + 108979918 GGGGTGTAGCCTGCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034573 15 - 111193037 GGGGTGTAGCCTGCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427513 15 + 3644372 GGGGTGTAGCCTGCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382745 15 - 10304083 GGGGTGTAGCCTGCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471790 15 - 107702431 GGGATTTGGCCTGCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015547 15 + 1565135 GGGGTGTAGCCTGCC i manLeu1.NW_012104432v1 T 69 C 0 s colAng1.NW_012118821v1 3380108 14 - 13651311 GGGGTGTA-CCTGCC i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 601928 14 + 5243153 GGTATGTGGCCTGC- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938194 14 - 1938448 GGGATGTGGCCTGC- i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e saiBol1.JH378218 3116500 121 - 7082604 T e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e calJac3.chr14 3468540 70 - 108792865 T a score=99767.000000 s hg38.chr2_KI270769v1_alt 63832 13 + 120616 TGGTGTCTCCATG s panTro5.chr2A 3525715 13 + 111504155 TGGTGTCTCCGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386460 13 + 114371477 TGGTGTCTCCGTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264317 13 + 637652 TGGTGTCTCTGTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060392 13 + 81552678 TGGTGTCTCCGTG i nomLeu3.chr19 C 0 T 67 s rheMac8.chr13 3323454 13 + 108979918 TGGTGTCTCCGTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034588 13 - 111193037 TGGTGTCTCCGTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427528 13 + 3644372 TGGTGTCTCCGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382760 13 - 10304083 TGGTGTCTCCGTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471805 13 - 107702431 TGGTGTCTCTGTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015562 13 + 1565135 TGGTGTCTCCATC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380122 11 - 13651311 TGGTGTCT--ATC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116379 13 - 7082604 TGGTGTCTCCGTG i saiBol1.JH378218 T 121 C 0 s cebCap1.NW_016107454v1 601942 13 + 5243153 TGGTGTCTCTGTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938208 13 - 1938448 TGGTGTCTCCATG i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e calJac3.chr14 3468540 70 - 108792865 T a score=114653.000000 s hg38.chr2_KI270769v1_alt 63845 16 + 120616 TCCTACCCCTGCGCCT s panTro5.chr2A 3525728 16 + 111504155 TCCTACCCGTGTGCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386473 16 + 114371477 TCCTACTCCTGCGCCT i panPan2.chr2A C 0 T 69 s gorGor5.CYUI01015435v1 264330 16 + 637652 TCCTACCCCTGCACCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060338 15 + 81552678 TCCTACCCGTGTGCC- i nomLeu3.chr19 T 67 C 0 s rheMac8.chr13 3323467 16 + 108979918 TCCTACCCCTGCGCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034601 16 - 111193037 TCCTACCCCTGCGCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427541 16 + 3644372 TCCTACCCCTGTGCCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382773 16 - 10304083 TCCTACCCCTGCACCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471818 16 - 107702431 TCCTACCCCTGCACCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015575 16 + 1565135 TCCTACCCCTGCACCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380133 16 - 13651311 TCCTACCCCTGTGCCT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116392 16 - 7082604 TCCGACCCGTGCGCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601955 16 + 5243153 TTCTACCCATGTGCCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938221 16 - 1938448 TCTGACCCATGCACCC i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e calJac3.chr14 3468540 70 - 108792865 T a score=188333.000000 s hg38.chr2_KI270769v1_alt 63861 22 + 120616 TCCCAGCTGGGTAGGTGGGTCT s panTro5.chr2A 3525744 22 + 111504155 TCCCAGCTGGGTAGGTGGGTCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386420 22 + 114371477 TCCCAGCTGGGTAGGTGGGTCT i panPan2.chr2A T 69 C 0 s gorGor5.CYUI01015435v1 264346 22 + 637652 TCCCAGCTGGGTAGATGGGTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060353 22 + 81552678 TCCCAGCTGGGTAGGTGGGTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323483 22 + 108979918 TCCCAGCTGGGTAGGTGGGTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034617 22 - 111193037 TCCCAGCTGGGTAGGTGGGTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427557 22 + 3644372 TCCCAGCTGGGTGGGTGGGTCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382789 22 - 10304083 TCCCAGCTGGGTGGGTGGGTCT i cerAty1.NW_012000820v1 C 0 T 69 s chlSab2.chr14 3471834 22 - 107702431 TCCCAGCTGAGTGGGTGGGTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015591 22 + 1565135 TCCCAGCTGGGTGGGTGGGTCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380149 21 - 13651311 T-CCAGCTGGGTGGGTGGGTCT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116408 22 - 7082604 TCCCAGCTGAGTAGGCGGGTCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601971 22 + 5243153 TTGCAGCTGGGTAGGCGGGTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938237 22 - 1938448 TCCTAGCCGGGTAGGCAGGTCT i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e calJac3.chr14 3468540 70 - 108792865 T a score=7334.000000 s hg38.chr2_KI270769v1_alt 63883 3 + 120616 -GGA s panTro5.chr2A 3525766 3 + 111504155 -GGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386442 3 + 114371477 -GGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264368 3 + 637652 -GGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060375 3 + 81552678 -GGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323505 3 + 108979918 -GGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034639 3 - 111193037 -GGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427579 3 + 3644372 -GGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382742 3 - 10304083 -GGA i cerAty1.NW_012000820v1 T 69 C 0 s chlSab2.chr14 3471856 3 - 107702431 -GGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015613 3 + 1565135 -GGA i manLeu1.NW_012104432v1 C 0 T 69 s colAng1.NW_012118821v1 3380170 3 - 13651311 -GGA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116430 3 - 7082604 GGG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601993 3 + 5243153 ACG- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938259 3 - 1938448 GGG- i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e calJac3.chr14 3468540 70 - 108792865 T a score=115978.000000 s hg38.chr2_KI270769v1_alt 63886 15 + 120616 GGGGTGTAGCCTGCC s panTro5.chr2A 3525769 15 + 111504155 GGGGTGTAGCCTGCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386445 15 + 114371477 GGGGTGTAGCCTGCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264371 15 + 637652 GGGGTGTAGCCTGCC i gorGor5.CYUI01015435v1 C 0 T 69 s nomLeu3.chr19 3060378 14 + 81552678 GGGGTGTAG-CTGCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323508 15 + 108979918 GGGGTGTAGCCTGCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034642 15 - 111193037 GGGGTGTAGCCTGCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427582 15 + 3644372 GGGGTGTAGCCTGCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382745 15 - 10304083 GGGGTGTAGCCTGCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471859 15 - 107702431 GGGGTGTAGCCTGCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015547 15 + 1565135 GGGGTGTAGCCTGCC i manLeu1.NW_012104432v1 T 69 C 0 s colAng1.NW_012118821v1 3380173 15 - 13651311 GGGGTGTAGCCTGCC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116433 14 - 7082604 GGGATGTGGCCTGC- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 601996 14 + 5243153 GGGATGTGGCCTGC- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938262 14 - 1938448 GGGATATGGCCTGC- i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e calJac3.chr14 3468540 70 - 108792865 T a score=9555.000000 s hg38.chr2_KI270769v1_alt 63901 1 + 120616 T s panTro5.chr2A 3525784 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386460 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264317 1 + 637652 T i gorGor5.CYUI01015435v1 T 69 C 0 s nomLeu3.chr19 3060392 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323523 1 + 108979918 T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034657 1 - 111193037 T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427597 1 + 3644372 T i macNem1.NW_012011978v1 C 0 T 138 s cerAty1.NW_012000820v1 3382760 1 - 10304083 T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471874 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015562 1 + 1565135 T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380188 1 - 13651311 T i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116447 1 - 7082604 T i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 602010 1 + 5243153 T i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938276 1 - 1938448 T i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e calJac3.chr14 3468540 70 - 108792865 T a score=195816.000000 s hg38.chr2_KI270769v1_alt 63902 28 + 120616 GGTGTCTCCGTCTCCTACCCCTGCACCT s panTro5.chr2A 3525785 28 + 111504155 GGTGTCTCCGTCTCCTACCCCTGCGCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386461 28 + 114371477 GGTGTCTCCGTCTCCTACTCCTGCGCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264318 28 + 637652 GGTGTCTCTGTCTCCTACCCCTGCACCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060393 28 + 81552678 GGTGTCTCCGTGTCCTACCCCTGCACCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323524 28 + 108979918 GGTGTCTCCGTCTCCTACCCCTGCGCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034658 28 - 111193037 GGTGTCTCCGTCTCCTACCCCTGCACCT i macFas5.chr13 C 0 I 207 s macNem1.NW_012011978v1 3427460 28 + 3644372 GGTGTCTCCGTGTCCTACCCCTGTGCCT i macNem1.NW_012011978v1 T 138 C 0 s cerAty1.NW_012000820v1 3382761 28 - 10304083 GGTGTCTCCGTCTCCTACCCCTGCACCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471875 28 - 107702431 GGTGTCTCCGTCTCCTACCCCTGCACCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015563 28 + 1565135 GGTGTCTCCATCTCCTACCCCTGCACCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380189 26 - 13651311 GGTGTCT--ATCTCCTACCCATGTGCCT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116448 28 - 7082604 GGTGTCTCTGTGTCCTACCCATGTGCCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 602011 9 + 5243153 GGTGTCTCC------------------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938277 28 - 1938448 GGTGTCCCCGTGTCCGACCCATGCGCCC i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e calJac3.chr14 3468540 70 - 108792865 T a score=108612.000000 s hg38.chr2_KI270769v1_alt 63930 15 + 120616 TCCCAGCTGGGTAGA s panTro5.chr2A 3525813 15 + 111504155 TCCCAGCTGGGTAGG i panTro5.chr2A C 0 T 69 s panPan2.chr2A 3386489 15 + 114371477 TCCCAGCTGGGTAGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264346 15 + 637652 TCCCAGCTGGGTAGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060421 15 + 81552678 TCCCAGCTGGGTAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323552 15 + 108979918 TCCCAGCTGGGTGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034893 15 - 111193037 TCCCAGCTGGGTAGG i macFas5.chr13 I 207 C 0 s macNem1.NW_012011978v1 3427488 15 + 3644372 TCCCAGCTGGGTGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382789 15 - 10304083 TCCCAGCTGGGTGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471903 15 - 107702431 TCCCAGCTGGGTGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015591 15 + 1565135 TCCCAGCTGGGTGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380215 14 - 13651311 -TCCAGCTGGGTGGG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116476 15 - 7082604 TTGAAGCTGGGCAGG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1938305 15 - 1938448 TCCCAACTGGGTAGG i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e cebCap1.NW_016107454v1 602020 0 + 5243153 C e calJac3.chr14 3468540 70 - 108792865 T a score=57954.000000 s hg38.chr2_KI270769v1_alt 63945 7 + 120616 TGGGTCT s panTro5.chr2A 3525759 7 + 111504155 TGGGTCT i panTro5.chr2A T 69 C 0 s panPan2.chr2A 3386504 7 + 114371477 TGGGTCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264361 7 + 637652 TGGGTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060436 7 + 81552678 TGGGTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323567 7 + 108979918 TGGGTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034908 7 - 111193037 TGGGTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427503 7 + 3644372 TGGGTCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382804 7 - 10304083 TGGGTCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471918 7 - 107702431 TGGGTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015606 7 + 1565135 TGGGTCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380229 7 - 13651311 TGGGTCT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3116491 7 - 7082604 TGGGTCT i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1938320 7 - 1938448 CAGGTCT i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e cebCap1.NW_016107454v1 602020 0 + 5243153 C e calJac3.chr14 3468540 70 - 108792865 T a score=17477.000000 s hg38.chr2_KI270769v1_alt 63952 2 + 120616 GG s panTro5.chr2A 3525766 2 + 111504155 GG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386511 2 + 114371477 GG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264368 2 + 637652 GG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060443 2 + 81552678 AG i nomLeu3.chr19 C 0 T 40 s rheMac8.chr13 3323574 2 + 108979918 GG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034915 2 - 111193037 GG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427510 2 + 3644372 GG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382811 2 - 10304083 GG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471925 2 - 107702431 GG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015613 2 + 1565135 GG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380236 2 - 13651311 GG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468470 2 - 108792865 GG i calJac3.chr14 T 70 C 0 s saiBol1.JH378218 3116498 2 - 7082604 GG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1938327 1 - 1938448 -G i aotNan1.NW_018507213v1 C 0 I 1 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e cebCap1.NW_016107454v1 602020 0 + 5243153 C a score=5634.000000 s hg38.chr2_KI270769v1_alt 63954 1 + 120616 A s panTro5.chr2A 3525768 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386513 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264370 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3323576 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034917 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427512 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382813 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471927 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015615 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380238 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468472 1 - 108792865 A i calJac3.chr14 C 0 C 0 s aotNan1.NW_018507213v1 1938329 1 - 1938448 G i aotNan1.NW_018507213v1 I 1 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e saiBol1.JH378218 3116500 0 - 7082604 C e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e cebCap1.NW_016107454v1 602020 0 + 5243153 C e nomLeu3.chr19 3060445 40 + 81552678 T a score=27300.000000 s hg38.chr2_KI270769v1_alt 63955 3 + 120616 GGG s panTro5.chr2A 3525769 3 + 111504155 GGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386514 3 + 114371477 GGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264371 3 + 637652 GGG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3323577 3 + 108979918 GGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034918 3 - 111193037 GGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427513 3 + 3644372 GGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382814 3 - 10304083 GGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3471928 3 - 107702431 GGG i chlSab2.chr14 C 0 I 6310 s manLeu1.NW_012104432v1 1015616 3 + 1565135 GGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380239 3 - 13651311 GGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468473 3 - 108792865 GGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116500 3 - 7082604 GGG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1938330 3 - 1938448 GGG i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e cebCap1.NW_016107454v1 602020 0 + 5243153 C e nomLeu3.chr19 3060445 40 + 81552678 T a score=71629.000000 s hg38.chr2_KI270769v1_alt 63958 11 + 120616 GTGTAGCCTGC s panTro5.chr2A 3525772 11 + 111504155 GTGTAGCCTGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386517 11 + 114371477 GTGTAGCCTGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264374 11 + 637652 GTGTAGCCTGC i gorGor5.CYUI01015435v1 C 0 I 1 s rheMac8.chr13 3323580 11 + 108979918 GTGTAGCCTGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034921 11 - 111193037 GTGTAGCCTGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427516 11 + 3644372 GTGTAGCCTGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382817 11 - 10304083 GTGTAGCCTGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3478241 11 - 107702431 GTGTAGCCTGC i chlSab2.chr14 I 6310 C 0 s manLeu1.NW_012104432v1 1015619 11 + 1565135 GTGTAGCCTGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380242 11 - 13651311 GTGTAGCCTGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468476 10 - 108792865 GTGTGGCCTG- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116503 10 - 7082604 GTGTGACCTG- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1938333 10 - 1938448 ATGTGGCCTG- i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e cebCap1.NW_016107454v1 602020 0 + 5243153 C e nomLeu3.chr19 3060445 40 + 81552678 T a score=7800.000000 s hg38.chr2_KI270769v1_alt 63969 1 + 120616 C s panTro5.chr2A 3525783 1 + 111504155 C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386528 1 + 114371477 C i panPan2.chr2A C 0 C 0 s rheMac8.chr13 3323591 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034932 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427527 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382828 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3478252 1 - 107702431 C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015630 1 + 1565135 C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380253 1 - 13651311 C i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468486 1 - 108792865 C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116513 1 - 7082604 C i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1938343 1 - 1938448 C i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e cebCap1.NW_016107454v1 602020 0 + 5243153 C e nomLeu3.chr19 3060445 40 + 81552678 T e gorGor5.CYUI01015435v1 264385 1 + 637652 I a score=8281.000000 s hg38.chr2_KI270769v1_alt 63970 1 + 120616 T s panTro5.chr2A 3525784 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386529 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264386 1 + 637652 T i gorGor5.CYUI01015435v1 I 1 C 0 s rheMac8.chr13 3323592 1 + 108979918 T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034933 1 - 111193037 T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427528 1 + 3644372 T i macNem1.NW_012011978v1 C 0 I 69 s cerAty1.NW_012000820v1 3382829 1 - 10304083 T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3478253 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015631 1 + 1565135 T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380254 1 - 13651311 T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468487 1 - 108792865 T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116514 1 - 7082604 T i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018507213v1 1938344 1 - 1938448 T i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e cebCap1.NW_016107454v1 602020 0 + 5243153 C e nomLeu3.chr19 3060445 40 + 81552678 T a score=81454.000000 s hg38.chr2_KI270769v1_alt 63971 12 + 120616 GGTGTCTCCGTC s panTro5.chr2A 3525785 12 + 111504155 GGTGTCTCCGTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386530 12 + 114371477 GGTGTCTCCGTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264387 12 + 637652 GGTGTCTCCGTG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3323593 12 + 108979918 GGTGTCTCCGTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034934 12 - 111193037 GGTGTCTCCATC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427598 12 + 3644372 GGTGTCTCCGTC i macNem1.NW_012011978v1 I 69 C 0 s cerAty1.NW_012000820v1 3382830 12 - 10304083 GGTGTCTCCGTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3478254 12 - 107702431 GGTGTCTCCATC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015632 12 + 1565135 GGTGTCTCCATC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380255 12 - 13651311 GATGTCTCCATC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468488 12 - 108792865 GGTGTCTCCGTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116515 12 - 7082604 GGTGTCTCTGTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 602020 3 + 5243153 ---------CCG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938345 12 - 1938448 GGTGTCTCCGTG i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I e nomLeu3.chr19 3060445 40 + 81552678 T a score=374183.000000 s hg38.chr2_KI270769v1_alt 63983 39 + 120616 TCCTACCCCTGCGCCTTCCCAGCTGGGTAGGTGGGTCTG s panTro5.chr2A 3525797 39 + 111504155 TCCTACCCCTGCGCCTTCCCAGCTGGGTAGGTGGGTCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386542 39 + 114371477 TCCTACCCCTGCGCCTTCCCAGCTGGGTAGGTGGGTCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264399 39 + 637652 TCCTACCCCTGCGCCTTCCCAGCTGGGTAGGTGGGTCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060405 39 + 81552678 TCCTACCCCTGCACCTTCCCAGCTGGGTAGGTGGGTCTA i nomLeu3.chr19 T 40 C 0 s rheMac8.chr13 3323605 39 + 108979918 TCCTACCCCTGCGCCCTCCCAGCTGGGTAGGTGGGTCTG i rheMac8.chr13 C 0 I 206 s macFas5.chr13 5034946 39 - 111193037 TCCTACCCCTGCGCCTTCCCAGCTGGGTGGGTGGGTCTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427610 39 + 3644372 TCCTACCCCTGCGCCTTCCCAGCTGGGTGGGTGGGTCTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382842 39 - 10304083 TCCTACCCCTGCGCCTTCCCAGCTGGGTAGATGGGTCTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3478266 39 - 107702431 TCCTACCCCTGCGCCTTCCCAGCTGGGTGGGTGGGTCTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015644 39 + 1565135 TCCTACCCCTGCGCCTTCCCAGCTGGGTAGATGGGTCTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380267 39 - 13651311 TCCTACCCCTGCACCTTCCCAACTGGGTAGGTGGGTCTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468500 39 - 108792865 TCCGACCCATGCGCCTGGGCAGCTGCGTAGGTGGGTCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116527 39 - 7082604 TCCGACCCGTGCGCCTGCGCAGCTGGGTAGGCGGATCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 602023 39 + 5243153 TCTGACCCGTGCGCCTGCGCAGCTGGGTAGGCGGGTCTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938357 39 - 1938448 TTCGACCCGTGCACCCTCCTAGCTGGGTAGGCAGGTCTG i aotNan1.NW_018507213v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I a score=14700.000000 s hg38.chr2_KI270769v1_alt 64022 2 + 120616 GG s panTro5.chr2A 3525836 2 + 111504155 GG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386581 2 + 114371477 GG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264438 2 + 637652 GG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060444 2 + 81552678 GG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323850 2 + 108979918 GG i rheMac8.chr13 I 206 C 0 s macFas5.chr13 5034985 1 - 111193037 -G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427649 1 + 3644372 -G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382881 1 - 10304083 -G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3478305 1 - 107702431 -G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015683 1 + 1565135 -G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380306 1 - 13651311 -G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468539 2 - 108792865 GG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116566 2 - 7082604 GG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 602062 2 + 5243153 GG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018507213v1 1938396 2 - 1938448 GG i aotNan1.NW_018507213v1 C 0 N 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I a score=844924.000000 s hg38.chr2_KI270769v1_alt 64024 92 + 120616 CCAAAAGCAGCTGCTGCAGGTGGAGCTCCCG-TCACTCACATGCTCTGCGTTTGATGCCTCTGCTAAGATGGAGCCTCTGTTTCTGC----ATTTAT s panTro5.chr2A 3525838 92 + 111504155 CCAAAAGCAGCTGCTGCAGGTGGAGCTCCCG-TCACTCACGTGCTCTGCGTTTGATGCCTCTGCTAGGATGGAGCTTCTGTTTCTGC----ATTTAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386583 92 + 114371477 CCAAAAGCAGCTGCTGCAGGTGGAGCTCCCG-TCACTCACGTGCTCTGCGTTTGATGCCTCTGCTAGGATGGAGCTTCTGTTTCTGC----ATTTAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264440 92 + 637652 CCGAAAGCAGCTGCTGCAGGTGGAGCTCCCG-TCACTCACGTGCTCTGCGTTTGATGCCTCTGCTAGGATGGAGCTTCTGTTTCTGC----ATTTAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060446 92 + 81552678 CCGAAAGCAGCTGCTGCAGGTGGAGCTCCCG-TCACTGACTTGCTCTGCGTTTGATGCCTCTACTATGATGGAGCTTCTGTTTCTGC----ATTTAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323852 96 + 108979918 GCTGAAGCAGCTGCTGCAGGTGGAGCGCCCG-TCACTCACGGGCTCTGCTTTTGATGCCTCTACTACAATGGAGCTTCTGTTTCTGCCTGCATTTAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5034986 96 - 111193037 GCTGAAGCAGCTGCTGCAGGTGGAGCACCCG-TCACTCACGGGCTCTGCTTTTGATGCCTCTACTACAATGGAGCTTCTGTTTCTGCCTGCATTTAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427650 96 + 3644372 GCTGAAGCAGCTGCTGCGGGTGGAGCGCCCG-TCACTCACGTGCTCTGCTTTTGATGCCTCTACTACAATGGAGCTTCTGTTTCTGCCTGCATTTAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382882 96 - 10304083 GCTGAAGCAGCTGCTGCAGGTGGTGTGCCCA-TCACTCACGTGCTCTGCTTTTGATGCCTCTACTACAATGGAGCTTCTGTTTCTGCCTGTATTTAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3478306 96 - 107702431 GCTGAAGCAGCTGCTGCAGGTGGAGCGCCCG-TCACTCACGTGCTCTGCTTTTGATGCCTCTGCTACAATGGAGCTTCTGTTTCTGCCTGCATGTAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015684 96 + 1565135 GCTGAAGCAGCTGCTGCAGGTGGCGCGCCCG-TCACTCACGTGCTCTGCTTTTGATACCTCTACTACAATGGAGCTTCTGTTTCTGCCTGCATTTAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380307 96 - 13651311 GCTGAAGCAGCTGCTGCAGGTGGAGCGCCCG-TCACTCACGTGCTCTGCTTTTGATGCCTCTGCTACAATGGAGCTTCTGTTTCTGCCTGCATTTAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468541 97 - 108792865 CTGAAATCAGCTGCTGCAGGTGGAGCTCCCGTTTCCTCACATGCGCTGCTTTTGATGCCTTTGCTACAACGGAGCTTCTGTTTCTGCCTGCATTAAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116568 97 - 7082604 CCGAAAGCAGCTGCTGCAGGTGGAGCTCCCGTTTCCTCATGTGCTCTGCTTTTGATGCCTCTGCTACAATGGTGCTTCTGTTTCTGCCTGCACTTAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 602064 97 + 5243153 TGGAAAGCAGCTGCTGCAGGCAGAGCTCCCGTTTCCTCATGTGCTCTGCTTTTGATGCCTCCGCTACGATGGAGCTTCTGTTTCTGCCTGCGTTTAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3345343 97 + 7587287 CCGAAAGCAGCTGCTGCAGGTAGAGCTCCCGTTTCCTCATGTGCTCTGCTTTTGATGCCTCCGCTACAATGGAGCTTCTGTTTCTGCCTGCATTTAC i aotNan1.NW_018509326v1 N 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548488 99 + 5252280 I a score=2642571.000000 s hg38.chr2_KI270769v1_alt 64116 286 + 120616 GCATCATTGGGGTGGGAAACT-CTGTTTCCTTTTTTCTAGACCTTTCTCTTCCTGCTGCCCTTCTGAAGGACCTCATTCCCCCTTCTCCCCTCATTGGCCGTGATAGTCCACAGGGAACGTCAGCCCCAGCGCAGCTTGTGCTGAGACCACCATGGCCCTGT-GGTGCGGGTCTTCTC--TCAGGCC-------TTGCGTGCT----CACTACAGAGGTCTGGGGTGTT---------TCTGCAGGGTTTTCTCCTCCACTCAGCACGTGGAGA-GATCGCCCAT-----GGCATGGAGAGATGGCCCAGACCCAC s panTro5.chr2A 3525930 284 + 111504155 GCGTCATTGGGGTGGGAAACT-CTGTTTCCTTTTTTCTAGACCTTTCTCTTCCTGCTGCCCTTCTGAAGGACCTCATTCCCCCTTCTCCCCTCATTGGCCGTGATAGTCCACAGGGAACGTCAGCCCCAGCGCAGCTTGTGCTGAGACCACCATGGCCCTGT-GGTGCAGGTCTTCTC--TCAGGCC-------TTGCGTGCT----CACTGCAAAGGTCTGGGGTGTT---------TCTGCAGGGTTTTCTCCTCCACTCAGCACGTGGAGA---TCGCCCAT-----GGCATGGAGAGATGGCCCAGGCCCAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386675 284 + 114371477 GCGTCATTGGGGTGGGAAACT-CTGTTTCCTTTTTTCTAGACCTTTCTCTTCCTGCTGCCCTTCTGAAGGACCTCATTCCCCCTTCTCCCCTCATTGGCCGTGATAGTCCACAGGGAACGTCAGCCCCAGCGCAGCTTGTGCTGAGACCACCATGGCCCTGT-GGTGCAGGTCTTCTC--TCAGGCC-------TTGCGTGCT----CACTGCAAAGGTCTGGGGTGTT---------TCTGCAGGGTTTTCTCCTCCACTCAGCACGTGGAGA---TCGCCCAT-----GGCATGGAGAGATGGCCCAGGCCCAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264532 286 + 637652 GCATCATTGGGGTGGGAAACT-CTTTTTCCTTTTTTCTAGACCTTTCTCTTCCTGCTGCCCTTCTGAAGGACCTCATTCCCCCTTCTCCCCTCATTGGCCGTGATAGTCCACAGGGAGCGTCAGCCCCAGCGCAGCTTGTGCTGAGACCACCATGGCCCTGT-GGTGCGGGTCTTCTC--TCTGGCC-------TTGCGTGCT----CACTACAAAGTTCTGGGGTGTT---------TCTGCAGGGTTTTCTCCTCCACTCAGCACGTGGAGA-GATTGCCCAT-----GGCATGGAGAGATGGCCCAGACCCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060538 286 + 81552678 GCATCATTGGGGTGGGAAACT-CTTTTTCCTTCTTTCTAGAGCTTTCTCTTCCTGCCGCCCTTCTGAAGGACCTCATTCCCCCTTCTCCCCTCGTTAGCCATGATAGTCCACAGGGAGCGTCAGCCCCAGCGCAGCTTGTGCTGAGACCACCATGGCCCTGT-GGTGTGGGTCTTCTC--TCAGGCC-------TTGCATGCT----CACTACAAAGTTCTAGCGTGTT---------TCTGCAGGGTTTTCCTCTCCACTCAGCACGTAGAGA-GATCACCCAT-----GGCATGGGGAGATGGCCCAGACCCAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3323948 277 + 108979918 GCATCACTGGGGTGAGAAACT-CTTTTTCCTTCTTTCTAGACCTTTCTCTTCCTGCTGCACTTCTGAAGGACCTCATTCTCCCTTCTCCCCTCATTAGCCATGACAGTCCACAGGGAGCGTCGGCCCCA--GCAGCTTGTGCTGAGACCACCGTGGCCCTGT-GGTGCAGGTCTTCTC--TCGG------------GCATGCT----CACTGCAGAGTTCTGCGGTGTT---------TCTGC--AGTTTTCTTCTCCACTCAGCATGTAGAGA-GATCGCCCAT-----GGCATGGAGAGATTGCCCAGGCCCAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5035082 282 - 111193037 GCATCACTGGGGTGGGAAACT-CTTTTTCCTTCTTTCTAGACCTTTCTCTTCCTGCTGCCCTTCTGAAGGACCTCATTCCCCCTTCTCCCCTCATTAGCCATGACAGTCCACAGGGAGCGTCGGCCCCA--GCAGCTTGTGCTGAGACCACCGTGGCCCTGT-GGTGCAGGTCTTCTC--TCGGGCC-------TTGCATGCT----CACTGCAGAGTTCTGCGGTGTT---------TCTGC--AGTTTTCTTCTCCACTCAGCATGTAGAGA-GATCGCCCAT-----GGCATGGAGAGATTGCCCAGGCCCAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3427746 282 + 3644372 GCATCACTGGGGTGGGAAACT-CTTTTTCCTTCTTTCTAGACCTTTCTCTTCCTGCTGCCCTTCTGAAGGATCTCATTCCCCCTTCTCCCCTCATTAGCCATGACAGTCCACAGGGAGCGTCGGCCCCA--GCAGCTTGTGCTGAGACCACCGTGGCCCTGT-GGTGCAGGTCTTCTC--TCGGGCC-------TTGCATGCT----CACTGCAGAGTTCTGCGGTGTT---------TCTGC--AGTTTTCTTCTCCACTCAGCATGTAGAGA-GATCACCCAT-----GGCATGGAGAGATTGCCCAGGCCCAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3382978 282 - 10304083 GCATCACTGGGGTGGGAAACT-CTTTTTCCTTCTTTCTAGACCTTTCTCTTCCTGCTGCCCTTCTGAAGGACCTCATTCCCCCTTCTCCCCTCATTAGCCATGACAGTCCACAGGGAGCGTCAGCCCCA--GCAGCTTGTGCTGAGACCACCATGGCCATGT-GGTGCGGGTCTTCTC--TCAGGCC-------TTGCATACT----CACTACAAAGTTCTGCGGTGTT---------TCTGC--AGTTTTCTTCTCCACTCAGCACGTAGAGA-GATCACCCAT-----GGCATGGAGAGATTGCCCAGGCCCAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3478402 283 - 107702431 GCATCACTGGGGTGGGAAACT-CTTTTTCCTTCTTTCTAGACCTTTCTCTTCC-GCTGCCCTTCTGAAGGACCTCATTCCCCCTTCTCCCCTCATTAGCCATGACAGTCCACAGGGAGCGTCGGCCCCA--GCAGCTTGTGCTGAGACCACCATGGCCCTGT-GGTGCAGGTCTTCTC--TCAGGCC-------TTGCATGCT----CACTACAGAGTTCTGGGGTGTT---------TCTGCAGAGTTTTCCTCTCCACTCAGCGTGTGGAGA-GATCACCCAT-----GGCATGGAGAGATTGCCCAGGCCCAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1015780 284 + 1565135 GCATCACTGGGGTGGGAAACT-CTTTTTCCTTCTTTCTAGACCTTTCTCTTCCTGCTGCCCTTCTGAAGGACCTCATTCCCCCTTCTCCCCTCATTAGCCATGACAGTCCACAGGGAGCGTCAGCCCCA--GCAGCTTGTGCTGAGACCACCATGGCCGTGT-GGTGCGGGTCTTCTC--TCAGGCC-------TTGCATACT----CACTACAAAGTTCTGCGGTGTT---------TCTGCAGAGTTTTCTTCTCCACTCAGCACGTAGAGA-GATCACCCAT-----GGCATGGAGAGATTGCCCAGGCCCAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380403 286 - 13651311 GCATCACTGGGGTGGGAAACT-CCTTTTCCTTCTTTCTAGACCTTTCTCTTCCTGCTGCCCTTCTGAAGGACCTCATTCCCCCTTCTCCCCTCATTAGCCATGACGGTCCACAGGGAGCGTCGGCCCCAGCGCAGCTTGTGCTGAGACCACCGTGGCCCTGA-GGTGCAGGTCCTCTC--TCCGGCC-------TTGCACGCT----CACTACAGAGTCCTGCGGCGTT---------TCTGCAGAGTTTTCTTCTCCACTCAGCACGTAGAGA-GATCACCCAT-----GGCATGGAGAGATTGCCCAGGCCCAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468638 281 - 108792865 GCTTCATTGGGATGGGAAACT-TTTTTTCCTTCTTTCTAGACCTTTCTCTTCCTGCTGCCCTT-TGAGGAACCTCATT---CCTCCTCCCTTCATTAGCCATGACAGCCTGCAGGGAGCACCAG-CGAAGCACAGCTTGTGCAGAGGCCACCACGACCCTGTGGGTGCAGGTCTTCTC--TCAGGCC-------TTGCATGCT----CACTACAAAGTTCTG-GGCATT---------TCCACAGGGTTTTCTTCTCTACTCAGCACATAGAGA-GATCACCCAT-----GGTGTGGAGAGATGGCCCAGCCCCGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116665 282 - 7082604 GCATCATTGGGATGGGAAACTCTTTTTTACTTCTTTCTAGACCTTTCTCTTCCTGCCGCCCTT-TGAGGGACCTCATT---CCTCCTCCCTTCATTAGCCATGACAGCCTGCAGGGAGTGCCAGCCCCAGCACAGCTTGTGCAGAGGCCACCACGACCCTGTGGGTGCAGGTCTTCTC--TCAGGCC-------TTGCATGCT----CACTGCAAAGTTCTG-GGCGTT---------TCCAC-GGGTTTTCTTCTCCACTCAACACAGAGAGA-GATCACCCAT-----GGTGTGGAGAGATGGCCCAGCCCCGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 602161 280 + 5243153 GCATCATTGGGATGGGAAACCCTTTTTTCCTTCTTTCTAGACCTTTCTCTTCCTGCTGCCCTT-TGAGGGACCTCATT---CCTCCTGCCTTCATTAGCCATGACAGCCCGCAGGGAGCGCCAGCCCCAGCACAGCTTGTGCAGAGGCCACCACGACACTGTGGGTGCAGGTCTTCTC--TCAGGCC-------TTGCATGTT----CACTGCAAAGTTCTG-GGTGTT---------TCCACAGGGTT---TTCTCCACTTAGCACATAGAGA-GATCACTCAT-----GGTGTGGAGAGATGGCCCAGCCTCAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3345440 282 + 7587287 GCATCATTGGGATGGGAAACTCTTTTTTCCTTCTTTCTAGACCTTTCTCCTCCTGCTGCCCTT-TGAGGGACCTCATT---CCTCCTCCCTTCATTAGCCATGACAGCCCACAGGGAGCGCCAG-TCCAGCACAGCTTGTGCAGAGGCCACCACGACCCTGTAGGTGCAGGTCTTCTC--TCAGGCC-------TTGAGTGCT----CACTACAAAGCTCTG-GGCGTT---------TCCACGGGGTTTTCTTCTCCACTCAGCACATAGAGA-GATCACCCAT-----GGTGTGGAGAGATGGCCCAGCCCCGC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2548587 268 + 5252280 GCCCCACTGGGGTGGGAAAGT--------------------CCTCTCTTCCCCTGCTGCCCCTGTGCAGGACCCCAT----CCTCCCCCACT-----GCCAGGACAGCTGGTGGGG----------CCT-------TCGGGCTGAGACTACCACAGCCC-AC-GGTGCGTGTCCTCCCAGCCAGGCCACATCCGTGGCATCCTCTTGCCCTCCAGCAGCATGTGGAGGTCATCCCCAGTGTGTAGATCCCTGTCGTGCCCTCAGCATGTGGAGATGATCTTCGATATTGGGGTGTAAAGGGCAGGCTGAGTCCCAC i otoGar3.GL873658 I 99 I 543 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I a score=73457.000000 s hg38.chr2_KI270769v1_alt 64402 7 + 120616 AGAGACC s panTro5.chr2A 3526214 7 + 111504155 AGAGACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386959 7 + 114371477 AGAGACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264818 5 + 637652 --AGACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060824 7 + 81552678 AGAGACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3324225 7 + 108979918 AGAGACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5035364 7 - 111193037 AGAGACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3428028 7 + 3644372 GGAGACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3383260 7 - 10304083 AGAGACC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3478685 7 - 107702431 AGAGGCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1016064 7 + 1565135 AGAGACC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380689 7 - 13651311 AGAGACC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468919 7 - 108792865 AGAGACC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116947 7 - 7082604 AGAGACC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 602441 7 + 5243153 AGAGACC i cebCap1.NW_016107454v1 C 0 I 159 s aotNan1.NW_018509326v1 3345722 7 + 7587287 AGAGACC i aotNan1.NW_018509326v1 C 0 I 1175 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548855 543 + 5252280 I a score=469961.000000 s hg38.chr2_KI270769v1_alt 64409 83 + 120616 TCGCCGCATAGAGGATTTGCCCAGACCCC-----------------------------------------TAGA--CCCCGCCACGTGAGGAGGTCACCCAGGCCCGTAGGGCTCCCGTGGTGTGC-------------------------------------- s panTro5.chr2A 3526221 83 + 111504155 TCGCCGCATAGAGGATTTGCCCAGACCCC-----------------------------------------TAGA--CCCCGCCACGTGAGGAGGTCACCCAGGCCCGTAGGGCTCCCATGGTGTGC-------------------------------------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3386966 83 + 114371477 TCGCCGCATAGAGGATTTGCCCAGACCCC-----------------------------------------TAGA--CCCCGCCACGTGAGGAGGTCACCCAGGCCCGTAGGGCTCCCGTGGTGTGC-------------------------------------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264823 83 + 637652 TCGCCGCATAGAGGATTTGCCCAGACCCC-----------------------------------------TAGA--CCCCACCACGTGAGGAGGTCACCCAGGCCCGTAGAGCTCCCGTGGTGTGT-------------------------------------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060831 82 + 81552678 TCGCCGCATAGAGGATTTGCCCAGG-CCC-----------------------------------------TAGA--CCCTGCCACGTGAGGAGGTCACCCTGGCCCGTAGAGCTCCCGTGGTGTGC-------------------------------------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3324232 85 + 108979918 TCGCCGCGTGGAGGGTTTGCCCAGGCCCG-----------------------------------------TAAAGCCCCCGCCACGTGGAGAGGTCACCCAGGCCCGTAGAGCCCCCACAGTGTGA-------------------------------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5035371 85 - 111193037 TCGCCGCGTGGAGGGTTTGCCCAGGCCCG-----------------------------------------TAAAGCCCCCGCCACGTGGAGAGGTCACCCAGGCCCGTAGAGCCCCCACAGTGTGA-------------------------------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3428035 85 + 3644372 TCGCCGCGTGGAGGGTTTGCCCAGGCCCG-----------------------------------------TAAAGCCCCCGCCACGTGGAGAGGTCACCCAGGCCCGTAGAGCCCCCACAGTGTGA-------------------------------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3383267 85 - 10304083 TCGCCGCGTGGAGGGTTTGCCCAGGCCTG-----------------------------------------TAAAGCCCCCACCACGTGGAGAGGTCACCCAGGCCCGTAGAGCCCCCACAGTGTGG-------------------------------------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3478692 85 - 107702431 TCGCCGCGTGGAGGGTTTGCCCAGGCCCG-----------------------------------------TAAAGCCCCCACCACGTGGAGAGGTCACCCAGGCCCATAGAGCCCCCACAGTGTGG-------------------------------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1016071 85 + 1565135 TCGCCGCGTGGAGGGTTTGCCCAGGCCCG-----------------------------------------TAAAGCCCCCACCACGTGGAGAGGTCACCCAGGCCCGTAGAGCCCCCACAGTGTGG-------------------------------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380696 85 - 13651311 TCGCTGCGTGGAGGGTTTGCCCAGGCCCG-----------------------------------------TAAAGCCCCCACCACGTGGAGAGGTCACCCAGGCCCGTAGCGCCCCCACAGTGTGG-------------------------------------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3468926 118 - 108792865 CTGCTGCGTGGTGAGGTCACCCAGGCCCG-----------------------------------------TAGAGACCCCCCTGTGTGGAGAGGTCGCCCAGGCCTGTAGAGACCCC-CTGCGTGGAGAGGTCACCCAGGCCCAGAGA----CCCAGCTCGTGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3116954 163 - 7082604 CCGCTGCATGGAGAGGTCACCCCAGCCCGTAGAGTTAGTTCCCAAGGCGTGGAGAGGTCACCACAGCCCATAGAGTTCCCAAGGTGTGGAGAGGTCACCCAAGCCCATAGAGACCCC-CTGTGTGGAGAGGCCGCCCAGGCCCATAGAGACCCCCAGCTCGTGG i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548855 543 + 5252280 I e cebCap1.NW_016107454v1 602448 159 + 5243153 I e aotNan1.NW_018509326v1 3345729 1175 + 7587287 I a score=2422287.000000 s hg38.chr2_KI270769v1_alt 64492 302 + 120616 GGAG-GCGCAGAACAAGCTCAGGAGTCTGCTGACCTGGTGCGCCACACCCCGGGGACCGCCAGTGGGCGTGTTCGAGGCTCCGCTGACCAGGGCGCTGTCAGGTCTGGTTCGGGCAGCGGCTTTGCCTCTGTGATAGGTGTCCCGTCCCTCTTTCTTCCTGTGCTCCCTCTACACTAGCCTAAGGGAAGTCAGTTTCCTTTT-TTTAATAAAttttaatttttgtagatacatagtaggtgtttat------gggttataggagatattttgatacaggcaggcaatgcgtaataatcccatcagggt-aa s panTro5.chr2A 3526304 302 + 111504155 GGAG-GCGCAGAACAAGCTCAGGAGTCTGCTGACCTGGTGCGCCACACCCCGGGGACCGCCAGTGGGCGTGTTCGAGGCTCCGCTGACCAGGGCGCTGTCAGGTCTGGTTCGGGCAGCGGCTTTGCCTCTGTGATAGGTGTCCCGTCCCTCTTTCTTCCTGTGCTCCCTCTACACTAGCCTAAGGGAAGTCAGTTTCCTTTT-TTTAATAAAttttaatttttgtagatacatagtaggtgtttat------gggttataggagatattttgatacaggcaggcaatgcgtaataatcccatcagggt-aa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3387049 302 + 114371477 GGAG-GCGCAGAACAAGCTCAGGAGTCTGCTGACCTGGTGCGCCACACCCCGGGGACCGCCAGTGGGCGTGTTCGAGGCTCCGCTGACCAGGGCGCTGTCAGGTCTGGTTCGGGCAGCGGCTTTGCCTCTGTGATAGGTGTCCCGTCCCTCTTTCTTCCTGTGCTCCCTCTACACTAGCCTAAGGGAAGTCAGTTTCCTTTT-TTTAATAAAttttaatttttgtagatacatagtaggtgtttat------gggttataggagatattttgatacaggcaggcaatgcgtaataatcccatcagggt-aa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 264906 299 + 637652 GGAG-GCACAGAACAAGCTCAGGACTCTGCTGACCTGGTGCGCCACACCCCGGGGACCGCCAGTGGGCGTGTTTGAGGCTCCGCTGACCAGGGCGCTGTCAGGTCTGGTTCGGGCAGCGGCTTTGC--CTGTGATAGGTGTCCCGTCCCTCTTTCTTCCTGTGCTCCCTCTACACTAGCGTAAGGGAAGTCAGTTTCCTTTT-TTTAATAAAttttaa-ttttatagatacatagtaggtgtttat------gagttataggagatattttgatacaggcagacaatgcgtaataatcccatcagggt-aa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3060913 295 + 81552678 GGAG-GCACAGAACAAGCACAGGAGTCTGCTGACCTGGTGCGTCACACCCCGGGGACCGCCAGTGGGCGTGTTCGAGGCTCCGCTGACCAGGGCGCTGCCAGGTCTGGCTCGGGCAGCGGCTTTGCCTCTGTGATAGGTGTCCCGTCCCTCTTTCTTCCTGTGCTCCCTCTACACTAGCCTAAGGGAAGTTAGTTTCCTTTT-TTTAATAAAttttaatttttgtagatacatagtaggtgttttt------g-------ggagatattttgatagaggcaggcaatgcgtaataatcacatcagggt-aa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3324317 301 + 108979918 GGAG-GCACAGAACAAGCACAGGAGTCCACTGACCTGGTGTGTCACACCCCGGGGACCACCAGTGGGCGTGTTCAAGGCTCCACTGACCAGGGCGCTGCCAGGTCTGGCTCAGGCAGTGGCTTTGCCTCTGTGATGGGTGTGCCGCCCCTCTTTCTTCCTGTGCTCCCTCTGTGCTAGCCTGAGGGAAGTCAGTTTCCTTTT-TTTAGTAAAttttaatttttgtggatacatagtaggtgtttat------gggttataggagatactttgatacaggcaggcaatgcgtaataatcacatc-aggt-aa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5035456 301 - 111193037 GGAG-GCACAGAACAAGCACAGGAGTCCACTGACCTGGTGTGTCACACCCCGGGGACCACCAGTGGGCGTGTTCAAGGCTCCACTGACCAGGGCGCTGCCAGGTCTGGCTCAGGCAGTGGCTTTGCCTCTGTGATGGGTGTGCCGCCCCTCTTTCTTCCTGTGCTCCCTCTGTGCTAGCCTGAGGGAAGTCAGTTTCCTTTT-TTTAGTAAAttttaatttttgtggatacatagtaggtgtttat------gggttataggagatactttgatacaggcaggcaatgcgtaataatcacatc-aggt-aa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3428120 301 + 3644372 GGAG-GCACAGGACAAGCACAGGAGTCCACTGACCTGGTGCGTCACACCCCGGGGACCACCAGTGGGCGTGTTCAAAGCTCCACTGACCAGGGCGCTGCCAGGTCTGGCTCAGGCAGTGGCTTTGCCTCTGTGATGGGTGTGCCGCCCCTCTTTCTTCCTGTGCTCCCTCTGTGCTAGCCTGAGGGAAGTCAGTTTCCTTTT-TTTAGTAAAttttaatttttgtggatacatagtaggtgtttat------gggttataggagatactttgatacaggcaggcaatgcataataatcacatc-aggt-aa i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3383352 301 - 10304083 GGAG-GCACAGAACAAGCGCAGGAGTCCACTGACCTGGTGCGTCACAACCCGGGGACCACCAGTGGGCGTGTTCAAGGCTCCACTGACCAGGGCGCTGCCAGGTCTGGCTGAGGCAGTGGCTTTGCCTCTGTGATGGGTGTGCTGCTCATCTTTCTTCCTGTGCTCCCTCTGTGCCAGCCTGAGGGAAGTCAGTTTCCTTTT-TTTAGTAAAttttaatttttgtggatgcatagtaggtgtttat------gggttataggagatattttgatacaggcaggcaatgcgtaataatcacatc-gggt-aa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3478777 297 - 107702431 GGAG-GCACAGAACAAGCGCAGGAGTCCACTGACCTG----GTCACACCCCGGGGACCACCAGTGGGCGTGTTCAAGGCTCCACTGACCAGGGCGCTGCCAGGTCTGGCTCGGACAGTGGCTTTGCCTCTGTGATGGGTGTGCCGCTCCTCTTTCTTCCTGTGCTCCCTCTGTGCTAGCCTGAGGGAAGTCAGTTTCCTTTT-TTTAGTAAAttttaatttttgtggatacatagtaggtgtttat------gggttataggagatattttgatataggcaggcaatgcgtaataatcacatc-gggt-aa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1016156 301 + 1565135 GGAG-TCACAGAACAAGCGCAGGAGTCCACTGACCTGGTGCGTCACAACCCGGGGACCACCAGTGGGCGTGTTCAAGGCTCCACTGACCAGGGCGCTGCCAGGTCTGGCTGAGGCAGTGGCTTTGCCTCTGTGATGGGTGTGCCGCTCCTCTTTCTTCCTGTGCTCCCTCTGTGCCAGCCTGAGGGAAGTCAGTTTCCTTTT-TATAGTAAAttttaatttttgtggatacatagtaggtgtttat------gggttataggagatactttgatacaggcaggcaatgcgtaataatcacatc-gggt-aa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3380781 288 - 13651311 GGAG-GCACAGAACAAGCGCAGGAGTCCACTGACCTGGTGCGTCACACCCCGGAGACCACCAGTGGGCGTGTTCAAGGCTCCACTGACCAGGGCGCTGCCAGGTCTGGCTCGGGCAGTGGCTTTGCCTCTGTGATGGGTGTGCCGC----------TCCTGTGCTCCCTCTACGCTAGCCTGAGGGAAGTCAGTGTCCTTTT-TTTAGTAAAttttaatttttgtggatacatagtacgtgtttat------gggttataggagatattttgatacaggcaggcagtgcg---taatcacatc-gggt-aa i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3469044 308 - 108792865 GGAGCGCACGGAACAAGCGCAGGAGTTGGCTGACCTGGTGTGTCACACCCCGGGGACCACCAGTGGGAGTGTTCAAAGCTCCGCAGACTGGGGAACTGCCAGGTCTGGCTGGTGCAGCGGCTTTGCCTCTGCAGTGGGTGTCCC--CCCACTTTCTTCCTGGGCTCCCTCCATGCCAGCCTGAAGGAAGTCAGCTTCCTTTTCTTTAATAGAttttcatttttgtgggtacatagtagatgtttatacttaggggttacgtgagatattgtgatacaagaaggcaatgtgtaataatcacatcagggt-aa i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3117117 308 - 7082604 GGAG-GCGCAGAACAAGCGCAGGAGTCAGCTGACCTGGTGCGTCACACCCTGGGGACTGCCAGTGGGAATGTTCAAAGCTCCGCTGACCGGGGCGCTGCCAGGTCTGGCTGGTGCAGTGGCTTTGCCTCTGCAGTGGGTGTCTC--CCCACTTGCCTCCCGTGCTCCCTCCACACCAGCCTGAATGAAGTCAGCTTCCTTTTCTTTAGTAGAttttcatttttgtgggtacatggtaggtgtttatatttatgggctacatgagatattgtgatacaagcaggcaatgtgtaatcatcacatcagggtaaa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 602607 306 + 5243153 GGAG-GCACAGAACAAGCACAGGAGTTGGCTGACCTGGTGTGTCACACCC-GGGGACTGCCAGTGGGAGTGTTCAAAGCTCCTCTGACCGGGGCGCTGCCAAGTCTGGCTGGTGCAGCGGCTTTGCCTCTGCAATGTGTGTCCC--CCCACTTTCTTCCCGTGCTCCCTCCATGCCAGCCTGAAGGAAGTCAGCTTCCTTTTCTTTAATAGGttttcagttttgtgggtacatagtaggtgtttatatttatgggttacgtgagatattgtgatacaagcaggcaatgtgtaataatcacatcagggt-aa i cebCap1.NW_016107454v1 I 159 I 282 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548855 543 + 5252280 I e aotNan1.NW_018509326v1 3345729 1175 + 7587287 I a score=1067442.000000 s hg38.chr2_KI270769v1_alt 64794 169 + 120616 atggagtatccatcccctcaagcattgatcctttgtgttgca-acaatccaattatgctcccttagttatttttttaacgtac---acttaaattactgtagtcacccttgtactagcaaacactaggtcttatttgttctat-ttttt-ttttgtacccattaccatccccact s panTro5.chr2A 3526606 168 + 111504155 atggagtatccatcccctcaagcattgatcctttgtgttgca-acaatccaattatactcccttagttatttttttaacgtac---acttaaattactatagtcacccttgtactagcaaatactaggtcttatttgttctat-ttttt-ttt-gtacccattaccatccccact i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3387351 167 + 114371477 atggagtatccatcccctcaagcattgatcctttgtgttgca-acaatccaattatactcccttagttatttttttaacgtac---acttaaattactatagtcacccttgtactagcaaatactaggtcttatttgttctat-ttttt-tt--gtacccattaccatccccact i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 265205 167 + 637652 atggagtatccatcccctcaagcatggatcctttgtgttgca-acaatccaattatactcctct-gttatttttttaatgtac---acttaaattactatagtcacccttgtactagcaaatactaggtcttatttgttctat-ttttt-ttt-gtacccattaccatccccact i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3061208 169 + 81552678 atggagtatccatcccctcaagcattaatcctttgtgttgca-acaatccagttatactcctttagttatttttttaatgtac---acttaaattactatagtcacccttgtactagcaaatactaggtcttatttattctat-ttttt-tgttgtacccattaccatccccact i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3324618 160 + 108979918 atggagtatccatcccctcaagcattgatcctttgtgttgca-acaagccaattatactccctcagttatttttttaatgtac------------actatagtcacccttgtactagcaaatactaggtcttattcattctaa-ttttt-ttttgtacccgttaccatccccact i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5035757 160 - 111193037 atggagtatccatcccctcaagcattgatcctttgtgttgca-acaagccaattatactccctgagttatttttttaatgtac------------actatagtcacccttgtactagcaaatactaggtcttattcattctaa-ttttt-ttttgtacccgttaccatccccact i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3428421 160 + 3644372 atggagtatccatcccctcaagcattgatcctttgtgttgca-acaagccaattatactccctcagttatttttttaatgtac------------actatagtcacccttgtactagcaaatactaggtcttattcattctaa-ttttt-ttttgtacccgttaccatccccact i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3383653 161 - 10304083 atggagtatccatcccctcaagcattgatcctttgtgttgca-acaagccaattatactccctcagttatttttttaatgtac------------actatagtcacccttgtactagcaaatgctaggtcttattcattctaa-tttttgttttgtacccgttaccatccccact i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3479074 162 - 107702431 atggagtatccatcccctcaagcattgatcctttgtgttgca-acaagccaattatactccctcagttatttttttaatgtac------------actatagtcacccttgtactagcaaatactaggtcttattcattctaatttttttttttgtacccgttaccatccccact i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1016457 161 + 1565135 atggagtatccatcccctcaagcattgatcctttgtgttgca-acaagccaattatactccctcagttatttttttaatgtac------------actatagtcacccttgtactagcaaatactaggtcttattcattctaa-tttttgttttgtacccgttaccatccccact i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3381069 160 - 13651311 atggagtatccatcccctcaagcattgatcctttttgttgca-acaaaccaattatactccctcagttatttttttaatgtac------------actatagtcacccttgtactagcaaatactaggtcttattcattctaa-ttttt-ttttgtacccgttaccatccccact i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3469352 146 - 108792865 gtgtaggatccat-ccctcaagcattgatcctttgtgttccagacaatccag-------------------tttttaaggtacttaaattgctttactatagtcagccttgtgctagcaaatactaggtc----ttgttctgg-ttttt-g---gtacacatcaccatccccact i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3117425 168 - 7082604 gtgcaggatccct-ccctcaggtgttgatcccttgtgttccagacaatccagttttagtcttttagtta-ttttttaatatactcaaattactttactatagtcacccttgtgctagcaaatactaggtcttatttattctat-gtttt-t---gtacgcatcaccacccccact i saiBol1.JH378218 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548855 543 + 5252280 I e cebCap1.NW_016107454v1 602913 282 + 5243153 I e aotNan1.NW_018509326v1 3345729 1175 + 7587287 I a score=7504.000000 s hg38.chr2_KI270769v1_alt 64963 1 + 120616 c s panTro5.chr2A 3526774 1 + 111504155 c i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3387518 1 + 114371477 c i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 265372 1 + 637652 c i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3061377 1 + 81552678 c i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3324778 1 + 108979918 c i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5035917 1 - 111193037 c i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3428581 1 + 3644372 c i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3383814 1 - 10304083 c i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3479236 1 - 107702431 c i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1016618 1 + 1565135 c i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3381229 1 - 13651311 c i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3469498 1 - 108792865 a i calJac3.chr14 C 0 I 538 s saiBol1.JH378218 3117593 1 - 7082604 c i saiBol1.JH378218 C 0 I 13 s aotNan1.NW_018509326v1 3346904 1 + 7587287 c i aotNan1.NW_018509326v1 I 1175 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548855 543 + 5252280 I e cebCap1.NW_016107454v1 602913 282 + 5243153 I a score=169436.000000 s hg38.chr2_KI270769v1_alt 64964 20 + 120616 catcccccactactgttccc s panTro5.chr2A 3526775 20 + 111504155 catcccccactactgttccc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3387519 20 + 114371477 catcccccactactgttccc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 265373 20 + 637652 catcccccactactgttccc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3061378 20 + 81552678 cgtcccccactactgttccc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3324779 20 + 108979918 catcccccactactcttccc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5035918 20 - 111193037 catcccccactactcttccc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3428582 20 + 3644372 catcccccactactcttccc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3383815 20 - 10304083 catcccccactactgttccc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3479237 20 - 107702431 catcccccactactgttccc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1016619 20 + 1565135 catcccccactactgttccc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3381230 20 - 13651311 catcccccacgactgttccc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470037 20 - 108792865 catccccaactgctgttcca i calJac3.chr14 I 538 C 0 s saiBol1.JH378218 3117607 20 - 7082604 catccccaactgctgttccg i saiBol1.JH378218 I 13 C 0 s aotNan1.NW_018509326v1 3346905 20 + 7587287 catccccaactgctgttccg i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548855 543 + 5252280 I e cebCap1.NW_016107454v1 602913 282 + 5243153 I a score=4237835.000000 s hg38.chr2_KI270769v1_alt 64984 471 + 120616 agcctctggtaaccatcctcctgctctccatctccatgagttcagttgtttaaagtttagctcccacagataagtgagaacatacgatgtttgtctttctgtgcctggcgtatgtcacttaacacagtgacctccagttccatccatgctgttgtaaatgacaggataccattcttttttatggccgaagagtactccatcgtgtatatatggcaattcctttatccccttgtctgctgatggacacttag-gttgcttccaagtcttggctgttgtgaacagtgctgcagcacacacgggtgtgcagtgatctct--gatagactgatttcctttcttttctttggagtatatatctaggcat-ggattgctgcgttgtatggtagctctattttttgtttttttgtagaaacctcaaactgttctccctagtggttgcactgatgtacattcccaccaactgtggacaagggG s panTro5.chr2A 3526795 470 + 111504155 agcctctggtaaccatcctcctgctctccatctccatgagttcagttgtttaaagtttagctcccacaggtaagtgagaacatacaatgtttgtctttctgtgcctggcgtatgtcacttaacacagtgacctccagttccatccatgctgttgtaaatgacaggataccattcttttttatggccgaagagtactccatcgtgtatatatggcaattcctttatccccttgtctgctgatggacacttag-gttgcttccaagtcttggctgttgtgaacagtgctgcagcacacacgggtgtgcagtgatctct--gatagactgatttcctttcttttctttggagtatatatctaggcat-ggattgctgggttgtatggtagctctattttttgtttttt-gtagaaacctcaaactgttctccgtagtggttgcactgatgtacattcccaccaactgtggacaagggG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3387539 470 + 114371477 agcctctggtaaccatcctcctgctctccatctccatgagttcagttgtttaaagtttagctcccacagataagtgagaacatacaatgtttgtctttctgtgcctggcgtatgtcacttaacacagtgacctccagttccatccatgctgttgtaaatgacaggataccattcttttttatggccgaagagtactccatcgtgtatatatggcaattcctttatccccttgtctgctgatggacacttag-gttgcttccaagtcttggctgttgtgaacagtgctgcagcacacacgggtgtgcagtgatctct--gatagactgatttcctttcttttctttggagtatatatctaggcat-ggattgctgggttgtatggtagctctattttttgtttttt-gtagaaacctcaaactgttctccgtagtggttgcactgatgtacattcccaccaactgtggacaagggG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 265393 470 + 637652 agcctctggtaaccatcctcctgctctccacctccatgagttcagttgtttaaagtttagctcccacaggtaagtgagaacatacaatgtttgtctttctgtgcctggcgtatgtcacttaacacagtgacctccagttccatccatgctgttgtaaatgacaggataccattcttttttatggccgaagagtactccatcgtgtatatatagcaattcctttatccccttgtctgctgatggacacttag-gttgcttccaagtcttggctgttgtgaacagtgctgcagcacacacgggtgtgcagtgatctct--gatagactgatttcctttcttttctttggagtgtatatctaggcat-ggattgctgggttgtatggtagctctattttttgtttttt-gtagaaacctcaaactgttctccatagtggctgcactgatgtacattcccaccaactgtggacaagggG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3061398 470 + 81552678 agcctctggtaaccatcctcctgctctccatctctgtgagttccgttgtttaatgtttagctcccacagataagtgaggacatacaatgtttgtctttctgtgcctggcatatgtcccttaacacaatgacctccagttccatccatgctgttgtaaatgacaggataccattcttttttatggctgaatagtactccatcatgtatatgtagcaattcctttatcccctcatctgctgatggacacttag-gttgcttccaagtcttggctgttgtgaacagtgctgcagcgcacacgggtgcgcagagatctct--gatagacggatttcctttcttttctttggggtatatatctaggcat-ggattgctgggttgtatggtagctctattttttgtttctt-gtagaaacctccaactgttctccatagtggttgtactgatttacattcccaccaactgtggacaagggG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3324799 470 + 108979918 agcctctggtaaccatccttctgctctccatctccatgagttcagttgtttaatgtttagctcccacagataagtgagaacatacagtgtttgtctttctgtgcctggcgtacgtcactt-acacggtgacctccagttccatctgtgctgttgtaaatgacaggatcccattctttttgatggccgagtcgtactccatcgtgtatatgtagcaagtcctttctcccgttgtctgctgatgggcacttag-gctgcttccaagtctcggctgttgcgaacagtgcttcagcgcacacggctgtgcagagatctct--gatagacggatttccttttttttctttggggtgtgtatctaggcgt-gcattgctgggttgtatggtagctctattttttgtttttttgtagaaaccgcagactgttctccgtagtggttgcactgatttgcattcccaccaactgtgtacaagggG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5035938 469 - 111193037 agcctctggtaaccatccttctgctctccatctccatgagttcagttgtttaatgtttagctcccacagataagtgagaacatacagtgtttgtctttctgtgcctggcgta-gtcactt-acacagtgacctccagttccatctgtgctgttgtaaatgacaggatcccattctttttgatggccgagtcgtactccatcgtgtgtatgtagcaagtcctttttcccgttgtctgctgatgggcacttag-gctgcttccaagtctcggctgttgcgaacagtgcttcagcgcacacggctgtgcagagatctct--gatagacggatttcctttcttttctttggggtgtgtatctaggcgt-gcattgctgggttgtatggtagctctattttttgtttttttgtagaaaccgcagactgttctccgtagtggttgcactgatttgcattcccaccaactgtgtacaagggG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3428602 469 + 3644372 agcctctggtaaccatccttctgctctccatctccatgagttcagttgtttaatgtttagctcccacagataagtgagaacatacagtgtttctctttctgtgcctggcgta-gtcactt-acacagtgacctccagttccatctgtgctgttgtaaatgacaggatcccattcttttttatggccgagtcgtactccattgtgtatatgtagcaagtcctttttcccgttgtctgctgatgggcacttag-gctgcttccaagtctcggctgttgcgaacagtgcttcagcgcacacggctgtgcagagatctct--gatagacggatttcctttcttttctttggggtgtgtatctaggcgt-gcattgctgggttgtatggtagctctattttttgtttttttgtagaaaccgcagactgttctccgtagtggttgcactgatttgcattcccaccaactgtgtacaagggG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3383835 470 - 10304083 agcctctggtaaccatccttctgctctccatctccatgagttccgttgtttaatgtttagctcccacagataagtgagaacatacaacgtttgtctttctgtgcctggcgtacgtcactt-acacagtgacctccagttccatctgtgctgttgtaaatgacaggatctcattcttttttatggccgagtcgtactctatcgtgtatatgtagcaagtcctttctcccgtcgtctgctgatggacacttag-gctgctcccaagtctcggctgttgcgaacagtgctgcagcgcacacggctgtgcagagatctct--gatagacggatttcctttcttttctttggggtgtgtatctaggcgt-gcattgctgggttgtatggtagctctattttttgtttttttgtagaaacctcagactgttctccgtagtggttgcactgatttgcattcccaccaactgtgtacaagggG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3479257 470 - 107702431 agcctctggtaaccatccttctgctctccatctccatgagttcagttgtttaatgtttagctcccacagataagtgagaacatacaatgtttgtctttctgtgcctggcgtacgtcactt-acacagtgacctccagttccatctgtgctgttgtaaatgacaggatcccatccttttttatggccgagtcgtactccatcgtgtatatgtagcaagtcctttctcccgtcgtctgctgatggacacgtag-gctgcttccaagtctcggctgttgcgaacagggctgcagcgcacacagctgtgcagagatctct--gatagacggatttcctttcttttctttggggtgtgtatctaggcgt-gcattgctgggttgtgtggtagctctattgtttgtttttttgtagaaacctcagactgttctccgtagtggttgcactgatttgcattcccaccaactgtgtacaagggG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1016639 470 + 1565135 agcctctggtaaccatccttctgctctacatctccatgagttccgttgtttaatgtttagctcccacagataagtgagaacatacaacgtttgtctttctgtgcctggcgtacgtcactt-acacagtgacctccagttccatctgtgctgttgtaaatgacaggatcccattcttttttatggccgagtcgtactccatcgtgtgtatgtagcaagtcctttctcccgtcgtctgctgatggacacttag-gctgctcccaagtctcggctgttgcgaacagtgctgcagcgcacacggctgtgcagagatctct--gatagacggatttcctttcttttctttggggtgtgtatccaggcgt-gcattgctgggttgtatggtagctctattttttgtttttttgtagaaacctcagactgttctccgtagtggttgcactgatttgcattcccaccaactgtgtacaagggG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3381250 469 - 13651311 agcctctggtaaccatcctcctgctctccatctccatgagttcagttgtttaatgtttagctcccacagaaaagtgagaacacacaatgtttgtctttctgtgcctggcgaatgtcactt-acacagtgacctccagttccatccatgctgttgcagatgacaggatcccattcttttttgtggccgaatcgtactccattgtgtatatgtggcaagtcctttctcccctcgtctgctgatggacacttcg-gctgcttccaagtcttggctgttgtgaacagtgctgcagcgcgcacggctgtgcagacatctct--gatagactgatttcctctcttctctttggggtgtgtatctaggcgt-gcgttactgggttgtatggtagctctattttttggttttttgtggaaaccccgaactgttctccgtagtggttgcactgatttgcattcccgccaactgtgcacaa-ggg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470057 465 - 108792865 agcctctggtaaccatt-ttctacttgccatctccgtgagttgaatggtttaatttttagcccccacagataaatgagagcatacgatgtttatctttctgtgcctggcatatgtcacttaacacagtgacctccagttccatccatgttgttgtaaatgacaggaccccattcttttttatggctgaatagtactccatcgtgtatgtg-gccatttcctttatcccctcatctgttgatggacacttag-gctgcttccaagtcgtggctgtggtgaacggtgctggcgcacactcaggcatgcagagatctctccgatagactgatttcc-----tttctctggggtatatatctggtcatgggattgctgggtggtatagcagctctctttttaggttttt-gtagaaactccaaactgttctccatagtggttgcactgat-tacattcccaccaactgtgtacgagggt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3117627 465 - 7082604 agcctctggtaaccattcttctacttaccatctccatgagttgagtggtgtaatttttagcccccacagataaatgagaacatacaatgtttatctttctgtgcctggcatatgtcacttaacaccgtgacctccagttccatccatgttgttgtaaatgacaggaccccattctgtttgatggctgaacggtcctccgtcgtgtgtgtg-gccgtttcctttatcccctcatccgtggatggacacttaacgctgcttccaagtcgtggctgtggtgaacggtgctggcacacactcgggcgtgcagagatctctccgatacaccagtttcc-----tttctccggggtatatatctgggcgtgggattgctgggtggtatagtagctctatttttaggttttt-gtagaaactcc--actgttctccatagtggttgcgctgat-tacattcccgccaactgtgtgcgagggt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 603195 466 + 5243153 agcctctggtaaccattcttctacttgccacctccatgagttgagtggtttaatttttagcccccacagataaatgagaacatacgatgtttatcttcctgtggctggcgtatgtcacttaacacagtgacccccagttccatccatgttgttgtaaatgacaggaccccattcttttttatggctgaatagtactccatcgtgtatgtg-gccatttcccttatcccctcatctgttgatggacacttag-gctgcgtccaagtcgtggctgtggtgaacgttgctggcgcacactggggcgtgcagagatcgctccgatacactgatttcc-----tttctctggggtatatatccgggcgtgggtttgctgggaggtatagtagctctatttttaggttttt-gtagaaactccaaactgttctccatagtggttgcactgat-tacattcgcaccaactgtatacgagggt i cebCap1.NW_016107454v1 I 282 C 0 s aotNan1.NW_018509326v1 3346925 462 + 7587287 agcctctagtaaccatc----ttcttgccatctccgtaagttgagtggtttaatttttagcccccacagataaatgagaacatacgatgtttatctttctgtgcctggcgtatgtcacttaacacagtgacctccagttccatccatgttgttgtaaatgacaggaccccattcttttttatggctgaatagtactccatcgtgtatgtg-gccatttcctttatcccctcatctgctgatggacacctag-gctgcttccaggtcgtggctgtggtgaacagtgctggcgcacactcgggcgtgcagagatctctccgatagactgatttcc-----tttttctggggtgtatatctgggtgtgggactgttgggtggtatagcagctctatttttaggttttt-gtagaaactccaaactgttctccatagcggttgcactgat-tacattcccgccaactgtgtacgggggt i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2548855 543 + 5252280 I a score=79152.000000 s hg38.chr2_KI270769v1_alt 65455 6 + 120616 TGAGGG s panTro5.chr2A 3527265 6 + 111504155 TGAGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388009 6 + 114371477 TGAGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 265863 6 + 637652 TGAGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3061868 6 + 81552678 TGAGGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325269 6 + 108979918 TGAGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036407 6 - 111193037 TGAGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429071 6 + 3644372 TGAGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384305 6 - 10304083 TGAGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3479727 6 - 107702431 TGAGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017109 6 + 1565135 TGAGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3381719 6 - 13651311 tGAGGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470522 6 - 108792865 tGAGGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118092 6 - 7082604 tGAGGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 603661 6 + 5243153 tgaggg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347387 6 + 7587287 tGAGGG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2549398 6 + 5252280 TGAGGG i otoGar3.GL873658 I 543 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e canFam3.chr17 2047466 424 + 64289059 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I a score=82978.000000 s hg38.chr2_KI270769v1_alt 65461 7 + 120616 AAGTTAA s panTro5.chr2A 3527271 7 + 111504155 AAGTTAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388015 7 + 114371477 AAGTTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 265869 7 + 637652 AAGTTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3061874 7 + 81552678 AAGTTAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325275 7 + 108979918 AAGTTAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036413 7 - 111193037 AAGTTAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429077 7 + 3644372 AAGTTAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384311 7 - 10304083 AAGTTAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3479733 7 - 107702431 AAGTTAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017115 7 + 1565135 AAGTTAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3381725 7 - 13651311 AAGTTAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470528 7 - 108792865 GGGTTAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118098 7 - 7082604 AAGTTAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 603667 7 + 5243153 aagctaa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347393 7 + 7587287 AAGTTAA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2549404 7 + 5252280 AATTTAG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2047890 7 + 64289059 AGATTAA i canFam3.chr17 I 424 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e proCoq1.NW_012151163v1 968704 965 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I a score=298263.000000 s hg38.chr2_KI270769v1_alt 65468 28 + 120616 TTTCATGGTAACACCAAGCCTTTCCTTT s panTro5.chr2A 3527278 28 + 111504155 TTTCATGGTAACACCAAGCCTTTCCTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388022 28 + 114371477 TTTCATGGTAACACCAAGCCTTTCCTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 265876 28 + 637652 TTTCATGGTAACACCAAGCCTTTCCGTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3061881 28 + 81552678 TTTCATGGTAACAGCAAGCCTTTCCTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325282 28 + 108979918 TTTCATGGGAACACCAAGCCTTCCATTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036420 28 - 111193037 TTTCATGGGAACACCAAGCCTTCCATTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429084 28 + 3644372 TTTCATGGGAACACCAAGCCTTCCATTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384318 28 - 10304083 TTTCGTGGGAACACCAAGCCTTCCATTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3479740 28 - 107702431 TTTCATGGGAACACCAAGCCTTCCATTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017122 28 + 1565135 TTTCATGGGAACACCAAGCCTTCCATTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3381732 28 - 13651311 TTTCATAGGAACACCAAGCCTTCCCTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470535 27 - 108792865 -TTCGTGGTAACACCAAGGTTTTCTTCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118105 27 - 7082604 -TTCATGGTAACACCAAGGTTTTCTTCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 603674 27 + 5243153 -ttcttggtaacaccaagattttcttct i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347400 27 + 7587287 -TTCATGGTAACACCAAGGTTTTCTTCT i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 969669 28 + 1238772 TTTCTTGGTAACACCAAGACTTTCTTTC i proCoq1.NW_012151163v1 I 965 C 0 s otoGar3.GL873658 2549411 26 + 5252280 ATTCCTGGTGACACCAACTCTTTCTT-- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2047897 28 + 64289059 TTCAATGGTACCATCAAGACTTCCTTCC i canFam3.chr17 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e mm10.chr12 91422229 2208 - 120129022 I e dasNov3.JH580157 582623 289 + 2232271 I a score=26983.000000 s hg38.chr2_KI270769v1_alt 65496 2 + 120616 TT s panTro5.chr2A 3527306 2 + 111504155 TT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388050 2 + 114371477 TT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 265904 2 + 637652 TT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3061909 2 + 81552678 TT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325310 2 + 108979918 TT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036448 2 - 111193037 TT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429112 2 + 3644372 TT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384346 2 - 10304083 TT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3479768 2 - 107702431 TT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017150 2 + 1565135 TT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3381760 2 - 13651311 TT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470562 2 - 108792865 TT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118132 2 - 7082604 TT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 603701 2 + 5243153 tt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347427 2 + 7587287 TT i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 969697 2 + 1238772 CT i proCoq1.NW_012151163v1 C 0 C 0 s mm10.chr12 91424437 2 - 120129022 TT i mm10.chr12 I 2208 C 0 s canFam3.chr17 2047925 2 + 64289059 CT i canFam3.chr17 C 0 C 0 e micMur3.chr8 2657001 991 - 159902609 I e dasNov3.JH580157 582623 289 + 2232271 I e otoGar3.GL873658 2549437 0 + 5252280 C a score=1402703.000000 s hg38.chr2_KI270769v1_alt 65498 105 + 120616 -GTCAGTTTCTGTTCTTATGATCATTCATTAGA--AGGCAGATTCACTGAAGAATGTCGTTTTACCTAGTTTAAACTGGCTAGATTCTTTTCAA--GGTTACAATTTTGA s panTro5.chr2A 3527308 105 + 111504155 -GTCAGTTTCTGTTCTTATGATCATTCATTAGA--AGGCAGATTCACTGAAGAATGTCGTTTTACCTAGTTTAAACTGGCTAGATTCTTTTCAA--GGTTACAATTTTGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388052 104 + 114371477 -GTCAGTTTCTGTTCTTATGATCATTCATTAGA--AGGCAGATTCACTGAAGAATGTCGTTTTACCTAGTTTAAACTGGCTAGATTCTTTTCAA--GG-TACAATTTTGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 265906 105 + 637652 -GTCAGTTTCTGTTCTTATGATCATTCATTAGA--AGGCAGATTCACTGAAGAATGTCGTTTTACCTAGTTTAAACTGGCTAGATTCTTTTCAA--GGTTACAATTTTGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3061911 105 + 81552678 -GTCAGTTTTTGTTCTTATGATCATTCATTAGA--AGGCAGATTCACTGAAGAATGTCATTTTACCTAGTTTAAACTGGCTAGGTTCTTTTCAA--GGTTACAATTTTGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325312 104 + 108979918 -GTCAGTTTCTGTTGTTATGATCATTCCTTAGA--AGACAGATTCACTGAAGAATGTTG-TTTCCCTAGTTTAAACTGGCTAGATTCTTTTCAA--GGTTACCATTTTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036450 104 - 111193037 -GTCAGTTTCTGTTGTTATGATCATTCCTTAGA--AGACAGATTCACTGAAGAATGTTG-TTTCCCTAGTTTAAACTGGCTAGATTCTTTTCAA--GGTTACCATTTTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429114 104 + 3644372 -GTCAGTTTCTGTTGTTATGATCATTCCTTAGA--AGACAGATTCACTGAAGAATGTTG-TTTCCCTAGTTTAAACTGGCTAGATTCTTTTCAA--GGTTACCATTTTGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384348 104 - 10304083 -GTCAGTTTCTGTTGTTATGATCATTCCTTAGA--AGACAGATTCACTGAAGAATGTTG-TTTCCCTAGTTTAAACTGGCTAGATTCTTTTCAA--GGTTACCATTTTGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3479770 104 - 107702431 -GTCAGTTTCTGTTGTTATGATCATTCCTTAGA--AGACAGATTCACTGAAGAATGTTG-TTTCCCTAGTTTAAACTGGCTAGATTCTTTTCAA--GGTTGCCATTTTGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017152 104 + 1565135 -GTCAGTTTCTGTTGTTATAATCATTCCGTAGA--AGACAGATTCACTGAAGAATGTTG-TTTCCCTAGTTTAAACTGGCTAGATTCTTTTCAA--GGTTACCATTTTGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3381762 105 - 13651311 -GTCACTTTCTGTTCTTATGATCATTCCTGAGA--AGACAGATCCACTGAAGAAGGTCGCTTTACCGAGTTTAAACTGGCTAGAGTCTTTTCAA--GATTACCATTTTGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470564 105 - 108792865 -GTCAGTTTCTGTTCTTGTGATTATTCGTCAGA--AGACAGATTCACTGAAGAATGTCAGTTCACCTAGTTTAAACTGGCTAGATTGTTTTCAG--GGTTGCAGTTTTGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118134 107 - 7082604 -GTCAATTTCTGCTCTTGTGATTATTCATCAGA--AGACAGATTCACCGAAGAATGTCATTTCACCGAGTTTGAACCGGCTAGATTGTTTTCAGAAGGTCACAGTTTGGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 603703 105 + 5243153 -gtcaatttctgttcttgtgattatTCGTCAGA--AGGCAGATTCACTGAAGAATGTCATTTCACCTAGTTTAAACTGGCTAGACTGTTCTCAA--GGTTACAGTTTTGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347429 105 + 7587287 -GTCAATTTCTGTTCTTGTGATTATTCGTCAGA--AGACAGATTCACTGAAGAATGTCATTTCGCCTAGTTTAAACTGGCTAGATTGTTTTCAG--GGTTACAGTTTTGA i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2657992 105 - 159902609 -GTCAGTTTCTGTGTTTATGATTATTCTTCAGA--AGACAGACTCGCTGAACAGTGTCGTTTGACCTGGTTTAAACCCACTAGACTCTTTCCAA--GGTCACAATCTTGA i micMur3.chr8 I 991 I 977 s proCoq1.NW_012151163v1 969699 104 + 1238772 -GTCGGTTTCTGTGTTTATGATTATTCTTCAGA--AGACAGATTCGCTGAA-AACGTCACTTGACCTGGGTTAAACCCACTAGATTCTTTCCAA--GGTCACAGTTTTGA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2549437 107 + 5252280 -GCCAGTTTCTGTGTTTATGATTATTCCTCAAAAGAGACAGACTCACTAAAAAATATCATCTGACCTGGTTTAAACCAGCTAGATTTTCTTCAG--GGTCACAATTTTGA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91424439 105 - 120129022 -GTCGGTTTCTGCCTTCACGATTACTCATCAGA--AGACAAATTAGCTGGGACATGCCATTTGACCTGGTTTGATCTGGCTCGTTTCTCTCAAA--GGTCACAGTCTTTA i mm10.chr12 C 0 C 0 s canFam3.chr17 2047927 86 + 64289059 GGTCAGTTTCTGTGTTCATGTTCCTTTATCAGA--AGACAGATTAGCTAAGAAGCGTCA--------------------CTAGATGACCTTTAC--TATCGTGGTTTTGA i canFam3.chr17 C 0 C 0 e dasNov3.JH580157 582623 289 + 2232271 I a score=29735.000000 s hg38.chr2_KI270769v1_alt 65603 2 + 120616 AC s panTro5.chr2A 3527413 2 + 111504155 AC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388156 2 + 114371477 AC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266011 2 + 637652 AC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062016 2 + 81552678 AC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325416 2 + 108979918 AC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036554 2 - 111193037 AC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429218 2 + 3644372 AC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384452 2 - 10304083 AC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3479874 2 - 107702431 AC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017256 2 + 1565135 AC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3381867 2 - 13651311 AC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470669 2 - 108792865 AC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118241 2 - 7082604 AC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 603808 2 + 5243153 AC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347534 2 + 7587287 AT i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 969803 2 + 1238772 AC i proCoq1.NW_012151163v1 C 0 I 1143 s otoGar3.GL873658 2549544 2 + 5252280 TC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91424544 2 - 120129022 AC i mm10.chr12 C 0 C 0 s canFam3.chr17 2048013 2 + 64289059 AC i canFam3.chr17 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e dasNov3.JH580157 582623 289 + 2232271 I a score=1113070.000000 s hg38.chr2_KI270769v1_alt 65605 119 + 120616 CCCACCT-T-GTCCCCTGAGTCATCGAGGTAGCCCA----AGATAACGGTTAAGAGG-AAACATCCTTTGTGTT----------------GGCAGCAAATTGTTCTCCAGTTTCTGT----TAAGTAGTGTCCCTTGCAGGTGAG-----G s panTro5.chr2A 3527415 119 + 111504155 CCCACCT-T-GTCCCCTGAGTCATCGAGGTAGCCCA----AGATAATGGTTAAGAGG-AAACATCCTTTGTGTT----------------GGCAGCAAGTTGTTCTCCAGTTTCTGT----TAAGTAGTGTCCCTTGCAGGTGAG-----G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388158 119 + 114371477 CCCACCT-T-GTCCCCTGAGTCATCGAGGTAGCCCA----AGATAATGGTTAAGAGG-AAACATCCTTTGTGTT----------------GGCAGCAAGTTGTTCTCCAGTTTCTGT----TAAGTAGTGTCCCTTGCAGGTGAG-----G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266013 119 + 637652 CCCACCT-T-GTCCCCTGAGTCATCGAGGTAGCCCA----AGATAACGGTTAAGAGG-AAACATCCTTTGCGTT----------------GGCAGCAAGTTGTTCTCCAGTTTGTGT----TAAGTAGTGTCCCTTGCAGGTGAG-----G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062018 119 + 81552678 CCTACGT-T-GTCTCCTGAGTCATCGAGGTAGCCCA----AGATAACGGTTAAGAGG-AAAAATCCTTTGTGTT----------------GACAGCCAGTTGTTCTCCAGTTTGTGT----TAAGTAATGGCCCTTGCAGGTGAG-----G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325418 119 + 108979918 CCCACGT-T-GTCCTCTGAGTCATCGAGGTAGCCCA----AGATAACGGTTAAGAGG-AAAAATCCTTTGTGTT----------------GACAGCAAGCTGTTCTCCAGTTTGTGT----TAAGTAACGGCCCCTGCGGGTGAG-----G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036556 119 - 111193037 CCCACGT-T-GTCCTCTGAGTCATCGAGGTAGCCCA----AGATAACGGTTAAGAGG-AAAAATCCTTTGTGTT----------------GACAGCAAGCTGTTCTCCAGTTTGTGT----TAAGTAACGGCCCCTGCGGGTGAG-----G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429220 119 + 3644372 CCCACGT-T-GTCCTCTGAGTCATCGAGGTAGCCCA----AGATAACGGTTAAGAGG-AAAAATCCTTTGTGTT----------------GACAGCAAGCTGTTCTCCAGTTTGTGT----TAAGTAACGGCCCCTGCGGGTGAG-----G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384454 119 - 10304083 CCCACGT-T-GTCCTCTGAGTCATCGAGGTAGCCCA----AGATAACGGTTAAGAGG-AAAAATCCTTCATGTT----------------GACAGCAAGCTGTTCTCCAGTTTGTGT----TAAGTAATGGCCCCTGCGGGTGAG-----G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3479876 119 - 107702431 CCCACGT-T-GTCCTCTGAGTCCTCGAGGTAGCCCA----AGATAACGGTTAAGAGG-AAAAATCCTTTGTGTT----------------GACAGCAAGCTGTTCTCCAGTTTGTGT----GAAGTAACGGCCCCTGCGGGTGAG-----G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017258 119 + 1565135 CCCACGT-T-GTCCTCTGAGTCATCGAGGTAGCCCA----AGATAACGGTTAAGAGG-AAAAATCCTTGGTGTT----------------GACAGCAAGCTGTTCTCCAGTTTGTGT----TAAGTAACGGCCCCTGCGGGTGAG-----G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3381869 124 - 13651311 CCAACGT-T-GTCCTCTGAGTCATCGAGGTAGCCCA----AGATAACGGTTAAGAGG-AAAAATTCTTTGTGTC----------------GACAGCAAGCTGTTCTCCAGTTTGTGT----TAAGTAATGGCCCCTGCAGGTGAGGAGACG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470671 122 - 108792865 CCCAGGT-T-GTCCTCTGAGTCATCAAGGTAGCCCA----AGATAACGGTTAAGAGG-AAAAGTCCTCCGTGTT----------------CATAGCACGTTGTTCTCCGTCTGATGTTAAGTAAGTAACAGCCC-TGCAGGTGAA-----G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118243 118 - 7082604 CACAGGC-T-GTCCTCTGAGTCATCAAGGCAGCCCA----AGATAATGGTTAAGAGG-AAAAGTCCTCCGTGTT----------------CACAGCACATTGTTCTCCATCTGGTGT----TAAATAACGGCCC-TGCAGGTGAA-----G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 603810 118 + 5243153 CCCAGGT-T-GTCCTCTGAGTTATCAAGGTAGCCCA----AGATAACGGTTAAGAGG-AAAAGTCCTCCGTGTT----------------CAAAGCTCATTGTTCTCCATCTGGTGT----TAAATAATGGCCC-TGCAGGTGAA-----G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347536 118 + 7587287 CCCAAGT-T-GTCCTCTGAGTCATCAAGGTAGCCCA----AGATAATGGTTAAGAGG-AAAAGTCCTTCTTGTT----------------CACAGCACATTGTTCTCCATCTGGTGT----TAAATAACGGCCC-TGCAGGTGAA-----C i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2549546 112 + 5252280 CCCAGGTGT-GTCCTCCGAAGCACTGAGGTAGCCCGAGATAGATAACCATTAAGAGGAAAAAACCCTTCCTGTT----------------CACAGCCAATTGTTCTTCAGTCAATGA----G-------------GGCAGGTGAG-----G i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91424546 121 - 120129022 CCCGTGT-CGGTCCCTTGAATCTCTCAG------------AGGTCACAGTCGTGAGC-------CCCACATGTTTCCCCGAGTCACATTCCACAGCTAATTGTTCTCTTGCTTATAC----AAAATAATGACTT-TACAAAGGAG-----G i mm10.chr12 C 0 I 249 s canFam3.chr17 2048015 65 + 64289059 -CCAG---T-GCATCCGGAGTCCGCGAG-TGGCCCA-------------------GG-------CCTCTGTAAC----------------TGCAG--------------------------GGAAT-------CCTGCAGGTACA-----G i canFam3.chr17 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I a score=855483.000000 s hg38.chr2_KI270769v1_alt 65724 95 + 120616 AGAGGCTGCTTTCATCCTCAGCAGGT-AGAGAC------CGGGGAGTCGGACCAGCGGAAA----------------------------TCCTCACCTCCTGGGGTGGGC------CGTGTGGGGAG-TGTTAACTG s panTro5.chr2A 3527534 95 + 111504155 AGAGGCTGCTTTCGTCCTCAGCAGGT-AGAGAC------TGGGGAGTCAGACCAGCGGAAA----------------------------TCCTCACCTCCTGGGGTGGGC------CGTGTGGGGAG-TGTTAACTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388277 95 + 114371477 AGAGGCTGCTTTCGTCCTCAGCAGGT-AGAGAC------TGGGGAGTCAGACCAGCGGAAA----------------------------TCCTCACCTCCTGGGGTGGGC------CGTGTGGGGAG-TGTTAACTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266132 95 + 637652 AGAGGCTGCTTTCGTCCTCAGCAGGT-AGAGAC------CGGGGAGTCGGACGAGCGGAAA----------------------------CCCTCACCTCCTGGGGCGGGC------CATGTGGGGAG-AGTTAACTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062137 95 + 81552678 AGAGGCTGCTTTCGTCCTCAGCAGGT-GTAGAC------CGGGGAGTCAGACGAACGGAAA----------------------------TCCTCACCTCCTGGGGCGGGT------CATGTGGGGAG-TGTTAACTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325537 95 + 108979918 AGAGGCCGCCTTCGTCCTCAGTGTGT-GTAGAC------CAGGGAGTCGGAGACACGGAAA----------------------------TCCTCACCTCCTGGGGCGGGT------CATGTGGGGAG-TGTTAAATG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036675 95 - 111193037 AGAGGCCGCCTTCATCCTCAGTGTGT-GTAGAC------CAGGGAGTCGGAGACACGGAAA----------------------------TCCTCACCTCCTGGGGCGGGT------CATGTGGGGAG-TGTTAAATG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429339 95 + 3644372 AGAGGCCGCCTTCGTCCTCAGTGTGT-GTAGAC------CAGGGAGTCGGAGACACGGAAA----------------------------TCCTCACCTCCTGGGGCGGGT------CATGTGGGGAG-TGTTAAATG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384573 95 - 10304083 AGAGGCCGCCTTCGTCCTCAGTGTGT-GTAGAC------CAGGGAGTCGGACACACGGAAA----------------------------TCCTCACCTCCTGGGGCGGGT------CATGTGGGGAG-TGTTAAATG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3479995 95 - 107702431 AGAGGCCGCCTTCGTCCTCAGTGTGT-GTAGAC------CAGGGAGTCGGACACACGGAAA----------------------------TCCTCACCTCCTGGGGCGGGT------CATGTGGGGAG-TGTTAACTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017377 95 + 1565135 AGAGGCCGCCTTCGTCCTCAGTGTGT-GTAGAC------CAGGGAGTCGGACACACGGAAA----------------------------TCCTCACCTCCTGGGGCGGGT------CATGTGGGGAG-TGTTAACTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3381993 95 - 13651311 AGACGCCGCTTTCGTCCTCAGCGTGT-GTAGAC------CGGGGAGTCCGACAAACAGAAA----------------------------TCCTCACCTCCTGGGGCGGGT------CATGTGGGGAG-TGTTAACTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470793 95 - 108792865 AGAGTCCGCCTTTGTCCTCAGCATGT-GGGGAC------CAGGGAGTCACATGAACAGAAA----------------------------CCCTTGCCTCCTGGGGCTGGT------CATGTGGGGAG-CGTTGATTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118361 95 - 7082604 AGAGGCCGCCTTTGTCCTCAGCGTGT-GGAGAC------CAGGGAGTCACACGAACGGAAG----------------------------CCCTCACCTCCTGGGGCGGGT------CATGTGGGGAG-TGTTGATTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 603928 92 + 5243153 AGACGCCGCTTTTGTCCTCAGTGTAT-GGGGAC------CTGGGAGTCACACGAATGGAAA----------------------------CCCTCGCCTCCTGGGGCGCGT------CAT---GGGAG-TGTTGATTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347654 94 + 7587287 AGAGGCCACTTTCGTCCTCAGCGTGC-GGGGAC------TAGGGAGTCACAGGAACGGAAA----------------------------CCCTTGCCTCCTAGGGCGGGT------CACGT-GGGAG-TGTTGATTG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2549658 130 + 5252280 AGAGGCCCCTCCAGTGCCCTGCTCCTCGTAGAC------CAGGGGGCTGGGCAGGTGCATGACCCCAGCGGCTTCTTCACTGGGCTGTTTCCTCACCCCCAGAGGAGGGTCGGGGCCATCGGGGAAG-TGGTGACTG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2048080 92 + 64289059 AGAGGCCCAGCTCACCCTC--CTTGC-TGGGACCCAACACGGGAAAGCCCAGAGCCGGT------------------------------TCCTCAC------GGGCGAGC------CACTGGGGGAGACGTTAACTG i canFam3.chr17 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e mm10.chr12 91424667 249 - 120129022 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e dasNov3.JH580157 582623 289 + 2232271 I a score=118037.000000 s hg38.chr2_KI270769v1_alt 65819 10 + 120616 GCAAGAC---------------GAT s panTro5.chr2A 3527629 10 + 111504155 GCAAGAC---------------GAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388372 10 + 114371477 GCAAGAC---------------GAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266227 10 + 637652 GCAAGAC---------------GAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062232 10 + 81552678 GCAAGAT---------------GAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325632 10 + 108979918 GCAAGAT---------------GAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036770 10 - 111193037 GCAAGAT---------------GAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429434 10 + 3644372 GCAAGAT---------------GAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384668 10 - 10304083 GCAAGAT---------------GAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480090 10 - 107702431 GCAAGAT---------------GAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017472 10 + 1565135 GCAAGAT---------------GAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382088 10 - 13651311 GCAAGAT---------------GAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470888 10 - 108792865 GCAAGAT---------------GAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118456 10 - 7082604 GCAAGAT---------------GAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604020 10 + 5243153 ACAATAC---------------GAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347748 10 + 7587287 GCAAGAT---------------GAT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2549788 25 + 5252280 GCAAGATCCTCACTAGGTGAAGGAT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2048172 10 + 64289059 GCAGGAC---------------AGT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 582912 10 + 2232271 GCAAAAT---------------GAA i dasNov3.JH580157 I 289 C 0 e micMur3.chr8 2658097 977 - 159902609 I e mm10.chr12 91424667 249 - 120129022 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I a score=8360.000000 s hg38.chr2_KI270769v1_alt 65829 1 + 120616 -C s panTro5.chr2A 3527639 1 + 111504155 -C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388382 1 + 114371477 -C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266237 1 + 637652 -C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062242 1 + 81552678 -C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325642 1 + 108979918 -C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036780 1 - 111193037 -C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429444 1 + 3644372 -C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384678 1 - 10304083 -C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480100 1 - 107702431 -C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017482 1 + 1565135 -C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382098 1 - 13651311 -C i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470898 1 - 108792865 -C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118466 1 - 7082604 -C i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604030 1 + 5243153 -C i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347758 1 + 7587287 -C i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2549813 1 + 5252280 -C i otoGar3.GL873658 C 0 I 126 s mm10.chr12 91424916 1 - 120129022 -C i mm10.chr12 I 249 C 0 s canFam3.chr17 2048182 1 + 64289059 -C i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 582922 1 + 2232271 G- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I a score=23531.000000 s hg38.chr2_KI270769v1_alt 65830 3 + 120616 TAA- s panTro5.chr2A 3527640 3 + 111504155 TAA- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388383 3 + 114371477 TAA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266238 3 + 637652 TAA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062243 3 + 81552678 TAA- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325643 3 + 108979918 TAA- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036781 3 - 111193037 TAA- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429445 3 + 3644372 TAA- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384679 3 - 10304083 TAA- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480101 3 - 107702431 TAA- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017483 3 + 1565135 TAA- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382099 3 - 13651311 TAA- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470899 3 - 108792865 TAA- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118467 3 - 7082604 TCA- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604031 2 + 5243153 T-A- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347759 3 + 7587287 TAA- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2549940 3 + 5252280 TAA- i otoGar3.GL873658 I 126 C 0 s mm10.chr12 91424917 3 - 120129022 TAA- i mm10.chr12 C 0 C 0 s canFam3.chr17 2048183 3 + 64289059 CGA- i canFam3.chr17 C 0 I 155 s dasNov3.JH580157 582923 3 + 2232271 -AAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I a score=983536.000000 s hg38.chr2_KI270769v1_alt 65833 90 + 120616 ATTCTCTACC-CAGATCACAGCGGCTACAGCAGCTTTGCTTTCAGAGAAGA--AAACACA----AAAAAAAGTGCCCAAAAGTTAAAAAGCAAGTGG s panTro5.chr2A 3527643 90 + 111504155 ATTCTCTACC-CAGATCACAGCGGCTACAGCAGCTTTGCTTTCAGAGAAGA--AAACACA----AAAAAAAGTGCCCAAAAGTTAGAAAGCAAGCGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388386 90 + 114371477 ATTCTCTACC-CAGATCACAGCGGCTACAGCAGCTTTGCTTTCAGAGAAGA--AAACACA----AAAAAAAGTGCCCAAAAGTTAGAAAGCAAGCGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266241 89 + 637652 ATTCTCTACC-CAGATCACAGCGGCTACAGCAGCGTTGCTTTCAGAGAAGA--AAACAC-----AAAAAAAGTGCCCAAAAGTTAGAAAGCAAGCGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062246 94 + 81552678 ATTCTCTACC-CAGATCACAGCAGCAACAACAGCTTTGCTTTCAGAGAAGA--AAACACAACACAAAAGAAGTGCCCAAAAGTTACAAACCAAGCAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325646 91 + 108979918 ATTCTCTACC-CAGATCACAGCAGCAACAGCAGCTTTGCTTTCAGAGAAAA--CAAAACAC---AAAAGAAGTGCCCAAAAGTTACAAACCAAGCAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036784 91 - 111193037 ATTCTCTACC-CAGATCACAGCAGCAACAGCAGCTTTGCTTTCAGAGAAAA--CAAAACAC---AAAAGAATTGCCCAAAAGTTACAAACCAAGCAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429448 91 + 3644372 ATTCTCTACC-CAGATCACAGCAGCAACAGCAGCTTTGCTTTCAGAGAAAA--CAAAACAC---AAAAGAAGTGCCCAAAAGTTACAAACCAAGCAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384682 91 - 10304083 ATTCTCTACC-CAGATCACAGCAGCAACAGCAGCTTTGCTTTCAGAGAAAA--CAAAACAC---AAAAGAAGTGCCCAAAAGTTACAAACCAAACAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480104 91 - 107702431 ATTCTCTACC-CAGATCACAGCAGCAACAGCAGCTTTGCTTTCAGGGAAAA--CAAAACAC---AAAAGAAGTGCCCAAAAGTTACAAACCAAGCAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017486 91 + 1565135 ATTCTCTACC-CAGATCACAGCAGCAACAGCAGCTTTGCTTTCAGAGAAAA--CAAAACAC---AAAAGAAGTGGCCAAAAGTTACAAACCAAGCAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382102 89 - 13651311 ATTCTCTACC-CAGATCACAGCAGCAACAGCAGCTTTGCTTT--GAGAAAA--CAAAACAC---AAAGGAAGTGCCCAAAAGTTACAAACCAAGCAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470902 93 - 108792865 ATTCTCTACGCCAAATAACAGCAGCAACAGCAGCTCGCCTTTCAGAGAAAA-CCAAAACTC---AAAAGAAGTGCCCAAAATTTACAAACCAAGCAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118470 92 - 7082604 ATTCTCTACG-CAAATCGCAGCAGCAACAGCAGCTTGTCTTTCAGAGAAAA-CCGAAACAC---AAAAGAAGTGCCCAAAAGTTACAAACCAAGCAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604033 83 + 5243153 ATTCTCTACG-CAAATC---------ACAGCAGCTTACCTTTCAGAGAAAA-CCAAAACAC---AAAAGAAGTGCCCAAACGTTACAAACCAAGCAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347762 92 + 7587287 ATTCTCTACG-CAAGTCACAGCAGCAGCAGCAGCTTGCCTTTCAGAGAAAA-CCAAAACAC---AAAAGAAGTGCCCAAAAGTTACAAAACCTGTGG i aotNan1.NW_018509326v1 C 0 I 12 s otoGar3.GL873658 2549943 82 + 5252280 ATTCTCTATT-CAAATT----------CAGCAGCTTTTACTTTATAGAAAA-CCAAAACAC---AGAAGAAGCAACTAAAAGTTACTAACAAAACAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91424920 92 - 120129022 ATCTTTTCCC-TGTGTCACAGGGACCATAGAAGCTTTTCTTTCAGGGAAAA-CCCAAATAC---AGATGAAACAATGGAAAGGTTTTAACCAAACAA i mm10.chr12 C 0 I 1 s canFam3.chr17 2048341 93 + 64289059 ATCCTCTGCC-CAGATTCCAGTGGAAACAGCCTTTTTTCTTTTCAAGAAAGGCCAAAACAC---AAAAGAAGCAGCCCAAAGTTATTAACCAAACAA i canFam3.chr17 I 155 C 0 s dasNov3.JH580157 582926 90 + 2232271 --ACTCTACC-CAAATTATAGCAGCAACAGCTTCTTTTCTTTCAGGGAAAA-CCAAAAAGG---CAAAGAAGCAACTGAAAGTTATTAACCAAAAGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I a score=75360.000000 s hg38.chr2_KI270769v1_alt 65923 22 + 120616 TAAAACC---GGG--AAGCGACA---CGTT s panTro5.chr2A 3527733 22 + 111504155 TAAAACC---GGG--AAGCGACA---CGTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388476 22 + 114371477 TAAAACC---GGG--AAGCGACA---CGTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266330 22 + 637652 TAAAACC---GGG--AAGCGACA---CGTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062340 24 + 81552678 TAAAACT---GTGAAAAGTGACG---TGTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325737 28 + 108979918 TAAAAACTGTGGA--AAGTGACCTGGTGTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036875 28 - 111193037 TAAAAACTGTGGA--AAGTGACCTGGTGTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429539 28 + 3644372 TAAAAACTGTGGA--AAGTGACCTGGTGTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384773 28 - 10304083 TAAAAACTGTGGA--AAGTGACCTGGTGTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480195 28 - 107702431 TAAAAACTGTGGA--AAGTGACCTGTTGTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017577 28 + 1565135 TAAAAACTGTGGA--AAGTGACCTGGTGTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382191 25 - 13651311 TAAAAACTGTGGA--AAGTGACC---TGTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3470995 24 - 108792865 CGAAGACTGTGGA--AAGTGCCA---TGT- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118562 24 - 7082604 CAAAAACTGTGGA--AAGGGACA---TGT- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604116 22 + 5243153 CAAAAACTGTGGA--AAGTGAC-----GT- i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2550025 23 + 5252280 TAAAAACTACAG---AAGTAACA---ATT- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91425013 23 - 120129022 -CAAAACTATGCA--AAGTACCA---GCT- i mm10.chr12 I 1 C 0 s canFam3.chr17 2048434 24 + 64289059 CGGAAACCATGTA--AAGTGACA---GTT- i canFam3.chr17 C 0 I 2 s dasNov3.JH580157 583016 13 + 2232271 -----------TA--AAGTGACA---ATT- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e aotNan1.NW_018509326v1 3347854 12 + 7587287 I a score=1109937.000000 s hg38.chr2_KI270769v1_alt 65945 106 + 120616 GCACAAAACGTATTTGGTAC-G-TTAAA-AAGGCCAGA---AGC---ACGGTG---CCCTGT-----AGGAA--TGAGACTGACATCTTCACAAAAGGTCATCATCAGTCTC--ATGTG--ACATTCTC s panTro5.chr2A 3527755 106 + 111504155 GCACAAAACGTATTTGGTAC-G-TTACA-AAGGCCAGA---AGC---ACAGTG---CCCTGT-----AGGAA--TGAGACTGACATCTTCACAAAAGGTCATCATCAGTCTC--ATGTG--ACATTCTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388498 106 + 114371477 GCACAAAACGTATTTGGTAC-G-TTACA-AAGGCCAGA---AGC---ACAGTG---CCCTGT-----AGGAA--TGAGACTGACATCTTCACAAAAGGTCATCATCAGTCTC--ATGTG--ACATTCTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266352 106 + 637652 GCACAAAACGTATTTGGTAC-G-TTACA-AAGGCCAGA---AGC---ACGGTG---CCCTGT-----AGGAA--TGAGACTGACATCTTCACAGAAGGTCATCATCAGTCTC--ATGTG--ACATTCTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062364 106 + 81552678 GCACAAAACGTATTTGGTAC-A-TTAAA-AAGGCCACA---AGC---ACAGTG---CCCTGT-----AGGAA--TGAGACCGACATTTTCACATAAGGTCATCATCAGTCTC--ATGTG--ACGTACTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325765 106 + 108979918 GCACAAAACGTTTTTGGTAC-A-TTAAA-AAGGCCACT---AGC---ACAGTG---CCCTGT-----GGGAA--TGAGACTGACATTTTCACAGAAGGTCATCACCACTCTC--ATGTG--ACATACTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5036903 106 - 111193037 GCACAAAACGTTTTTGGTAC-A-TTAAA-AAGGCCACT---AGC---ACAGTG---CCCTGT-----GGGAA--TGAGACTGACATTTTCACAGAAGGTCATCACCACTCTC--ATGTG--ACATACTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429567 106 + 3644372 GCACAAAACGTTTTTGGTAC-A-TTAAA-AAGGCCACT---AGC---ACAGTG---CCCTGT-----GGGAA--TGAGACTGACATTTTCACAGAAGGTCATCACCACTCTC--ATGTG--ACATACTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384801 106 - 10304083 GCACAAAACGTTTTTGGTAC-A-TTAAA-AAGGCCACT---AGC---ACAGTG---CCCTGT-----GGGAA--TGAGACTGACATTTTCACAGAAGGTCATCACCACTCTC--ATGTG--ACATACTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480223 105 - 107702431 GCACAAAACGTATTTGGTAC-A-TTAAA-AAGGCCACT---AGC---ACAGTG---CCCTGT-----GGGAA--TGAGACTGACATTTTCACAGAAGGTCATCA-CACTCTC--ATGTG--ACATACTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017605 106 + 1565135 GCATAAAACGTATTTGGTAC-A-TTAAA-AAGGCCACT---AGC---ACAGTG---CCCTGT-----GGGAA--TGAGACTGACATTTTCACAGAAGGTCATCACCACTCTC--ATGTG--ACATACTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382216 106 - 13651311 ACACAAAATGTATTTGGTGC-A-TTAAA-AAGGCCACT---AGC---ACAGTG---CCCTGT-----GGGAA--TGAGACTGACATTTTCACAGAAGGTCATCACCACTCTC--ACGTG--ACATACTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3471019 105 - 108792865 GCTCAAAACATATTTGGTAC-A-TTAAA-AATGCCATA---AGC---GCAGTG---CCTGGT-----AGGAA--TGGGGCTGACCTTTTCACAGGA-GTTATCACCACTCTC--AGGTG--ACATACTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118586 102 - 7082604 GCTCAAAACGTATTTGGTAC-A-TTTAA-AAGGCCACA---AGC---ACAGCG---CCTGGT-----AGGAA--TGGGGCCGACGTCTTCAC---A-GTTATCACCACTCTC--AGGTG--ACATACTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604138 103 + 5243153 GCTCAAGACGTGTTTGGTAC-A-TTCAA-AAGGCCACA---AGC---GCAGTG---CCCGGT-----AGGAA--TGGGGCCGGTGTTTTCACAGGA-GTTATCAC--CTCTC--AGGTG--ACATACGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347866 105 + 7587287 GCTCCAAACGTATTTGGTAC-A-TTAAA-AAGGCCACA---AGC---GCAGTG---CCCGGT-----AGGAA--TGGGGCTGACATTTTCACAGGA-GTTATCACGACTCTC--AGGTG--ACATACTT i aotNan1.NW_018509326v1 I 12 C 0 s otoGar3.GL873658 2550048 107 + 5252280 GCACCTAA----TTTGACAC---CTGAA-AAGGCC-CC---AGC---GCCTTG---CTTTGCCTTAGAGGAA--TAAGGCTGATATTTTCACAAAAGTGAATTGTCATTCTCATATGTA--ACATACTC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91425036 109 - 120129022 TTACAAAATGGACCCAGTGCTG-AAGAA-AAGGCTGGA---GGC---TCACTGGCACCCCGG-----AGAAAGGCGGGGCTGATGCTCCCACAGCA---CTTGATCACTCTT--GTGTA--CAGCTTTT i mm10.chr12 C 0 C 0 s canFam3.chr17 2048460 112 + 64289059 TCAGAATATATATTTGATAC-GTTTCAA-GAGGCCACATCCCTC---ATGGTG---CCCTGG-----AGGAA--TAAGACTGATGTTTTCACAGAAGTTAATAATCAGCCTC--GTGTGTAACATACTT i canFam3.chr17 I 2 C 0 s dasNov3.JH580157 583029 112 + 2232271 GCACAAAATTTATTTGGTGC-A-TTAAAGAAGGCCGTG---TACCTTGTGGTG---CCCTTG-----AGGAA--TAAGACTGATATTTTCACAAAAGTTAATAATCATTCTCCTGTGTG--ACATACCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I a score=40504.000000 s hg38.chr2_KI270769v1_alt 66051 4 + 120616 CATG s panTro5.chr2A 3527861 4 + 111504155 CATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388604 4 + 114371477 CATG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266458 4 + 637652 CATG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062470 4 + 81552678 AATG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325871 4 + 108979918 GATG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037009 4 - 111193037 GATG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429673 4 + 3644372 GATG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384907 4 - 10304083 CATG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480328 4 - 107702431 GATG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017711 4 + 1565135 GATG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382322 4 - 13651311 GATG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3471124 4 - 108792865 GATG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118688 4 - 7082604 CATG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604241 4 + 5243153 GATG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347971 4 + 7587287 GATG i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91425145 4 - 120129022 CATG i mm10.chr12 C 0 I 153 s canFam3.chr17 2048572 4 + 64289059 GATG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 583141 4 + 2232271 GACA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e otoGar3.GL873658 2550155 0 + 5252280 C a score=61092.000000 s hg38.chr2_KI270769v1_alt 66055 14 + 120616 C--------ttttttttta--------aag-- s panTro5.chr2A 3527865 14 + 111504155 C--------ttttttttta--------aag-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388608 13 + 114371477 C---------tttttttta--------aag-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266462 14 + 637652 C--------ttttttttta--------aag-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062474 22 + 81552678 Cttttttttttttttttta--------aag-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325875 13 + 108979918 C---------tttttttta--------aag-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037013 13 - 111193037 C---------tttttttta--------aag-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429677 13 + 3644372 C---------tttttgtta--------aag-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384911 13 - 10304083 C---------tttttttta--------aag-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480332 8 - 107702431 C--------------ttta--------aag-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017715 13 + 1565135 C---------tttttttta--------aag-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382326 13 - 13651311 C---------tttgtttta--------aag-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3471128 15 - 108792865 C-------ttttttatttt--------aag-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118692 23 - 7082604 C-------ttttttttttttttttttgaag-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604245 15 + 5243153 C-------ttttttttttg--------aag-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347975 17 + 7587287 C-------ttttttttttttt------aag-- i aotNan1.NW_018509326v1 C 0 C 0 s canFam3.chr17 2048576 13 + 64289059 ---------CTTTTCTTTA--------AAA-- i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 583145 14 + 2232271 ----------TTATTCTTT--------AAGAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e mm10.chr12 91425149 153 - 120129022 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e otoGar3.GL873658 2550155 0 + 5252280 C a score=12376.000000 s hg38.chr2_KI270769v1_alt 66069 1 + 120616 a s panTro5.chr2A 3527879 1 + 111504155 a i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388621 1 + 114371477 a i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266476 1 + 637652 a i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062496 1 + 81552678 a i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325888 1 + 108979918 a i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037026 1 - 111193037 a i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429690 1 + 3644372 a i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384924 1 - 10304083 a i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480340 1 - 107702431 a i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017728 1 + 1565135 a i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382339 1 - 13651311 a i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3471143 1 - 108792865 a i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118715 1 - 7082604 a i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604260 1 + 5243153 a i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347992 1 + 7587287 a i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 583159 1 + 2232271 A i dasNov3.JH580157 C 0 I 2 e micMur3.chr8 2658097 977 - 159902609 I e mm10.chr12 91425149 153 - 120129022 I e canFam3.chr17 2048589 1 + 64289059 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e otoGar3.GL873658 2550155 0 + 5252280 C a score=2179490.000000 s hg38.chr2_KI270769v1_alt 66070 301 + 120616 cagggtctcattctgtcacccagcctggagtgcagtggtgcagtccc-tggtcactgc--------agccttgacctcccaggctcaggtgatcctcccacctcagcctcccaggtagctgggaccacagg-cgcacaccaccatgcccagctaatgtt-ttgtatttttgtagagatggggttttgccatgttgccccagctggtctctaactcctgggctcaagtgacccacctgcctcggcctcccaag-----------------------------------------gtgttgggattacaggcttgagccaccgcTCAATCCCAGAAGTGTTGGGATTACAGGCT-------------------T s panTro5.chr2A 3527880 301 + 111504155 cagggtctcactctgtcacccagcctggagtgcagtggtgcagtccc-tggtcactgc--------agccttgacctcccaggctcaggtaatcctcccacctcagcctcccaggtagctggaaccacagg-cacacaccaccatgcccagctaatgtt-ttgtatttttgtagagatggggttttgccatgttgccccagctggtctctaactcctgggctcaagtgacccacctgcctcggcctcccaag-----------------------------------------gtgttgggattacaggcttgagccaccgcTCAATCCCAGAAGTGTTGGGATTACAGGCT-------------------T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388622 301 + 114371477 cagggtctcactctgtcacccagcctggagtgcagtggtgcagtccc-tggtcactgc--------agccttgacctcccaggctcaggtgatcctcccacctcagcctcccaggtagctggaaccacagg-cacacaccaccatgcccagctaatgtt-ttgtatttttgtagagatggggttttgccatgttgccccagctggtctctaactcctgggctcaagtgacccacctgcctcggcctcccaag-----------------------------------------gtgttgggattacaggcttgagccactgcTCAATCCCAGAAGTGTTGGGATTACAGGCT-------------------T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266477 342 + 637652 cagagtctcactctgtcacccaggctggagtgcagtggtgcagtccc-tggtcactgc--------agccttgacctcccaggctcaggcgatcctcccacctcagcctcccaggtagctgggaccacagg-cgcacaccaccatgcccagctaatttt-ttgtatttttgtagagatagggttttgccatgttgccccagctggtctctaactccttggctcaagtgacccacctgcctcggcctcccaaggtgttgggattacaggcttgagccaccgcTCAAtcccagaagtgttgggattacaggcttgagccaccgcTCAATCCCAGAAGTGTTGGGATTACAGGCT-------------------T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062497 259 + 81552678 cagggtctta--ctgtcaccgaggctggagtgcaatggtgcagtcac-tggtcactgc--------agccttgacctcccaggctcaggtgatcctcccacctcagcctcccaggtagctgggaccacagg-cacataccaccatgcccagctaatttt-ttgtatttttgtagagatggggttttgccatgttgcccaagctggtctttaactcctgggctcaagtgacccacctgcctcggcctcccaaa---------------------------------------------------------------------------------actgttgggattacaggct-------------------t i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3325889 254 + 108979918 cagggtctcactctgtcacccaggctggagtgcagtggtacagtcac-tggtcactgcggccttgaagccttgacctcccaggcttaagtgatcctcccacctcagcctcccaggtagctggaaccacagg-tgcacaccaccatgcccagctaatttt-ttgtatttttgtagaggtggggttttgccatgttgcccaagctggt--------------ctcaagtgatccgcctgcctcggcctccc----------------------------------------------------------------------------------aaagtgttgggattacaggGT-------------------T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037027 254 - 111193037 cagggtctcactctgtcacccaggctggagtgcagtggtgcagtcac-tggtcactgcggccttgaagccttgacctcccaggcttaagtgatcctcccacctcagcctcccaggtagctggaaccacagg-tgcacaccaccatgcccagctaatttt-ttgtatttttgtagaggtggggttttgccatgttgcccaagctggt--------------ctcaagtgatccgcctgcctcggcctccc----------------------------------------------------------------------------------aaagtgttgggattacaggGT-------------------T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429691 254 + 3644372 cagggtctcactctgtcacccaggctggagtgcagtggtgcagtcac-tggtcactgcggccttgaagccttgacctcccaggcttaagtgatcctcccacctcagcctcccaggtagctggaaccacagg-tgcacaccaccatgcccagctaatttt-ttgtatttttgtagaggtggggttttgccatgttgcccaagctggt--------------ctcaagtgatccgcctgcctcggcctccc----------------------------------------------------------------------------------aaagtgttgggattacaggGT-------------------T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3384925 254 - 10304083 gagggtctcactctgtcacccaggccggagtgcagtggtgcagtcac-tggtcactgcggccttgaagccttgacctcccagtctcaagtgatcctcccacctcagcctcccaggtagctggaaccacagg-tgcacaccaccatgcccagctaatttt-ttgtgtttttgtagaggtggggttttgccatgttgcccaagctggt--------------ctcaagtgatccgcctgcctcggcctccc----------------------------------------------------------------------------------aaagtgttgggattacaggGT-------------------T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480341 254 - 107702431 cagggtctcactctgtcacccaggccggagtgcagtggtgcagtcac-tggtcactgcggccttgaagccttgacctcccaggctcaagtgatcctcccacctcagcctcccaagtagctggaaccacagg-tgcacaccaccatgcccagctaatttt-ttgtatttttgtagaggtggggttttgccatgttgcccaagctggt--------------ctcaagtgatccgcctgccccggcctccc----------------------------------------------------------------------------------aaagtgttgggattacaggGT-------------------T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017729 254 + 1565135 gagggtctcactctgtcacccaggccggagcgcagtggtgcagtcac-tggtccctgcggccttgaagccttgacctcccaggctgaagtgatcctcccacctcagcctcccaggtagctggaaccacagg-tgctcaccaccatgcccagctaatttt-ttgtatttttgtagaggtggggttttgccatgttgcccaagctggt--------------ctcaagtgatccgcctgcctcggcctccc----------------------------------------------------------------------------------aaagtgttgggattacaggGT-------------------T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382340 295 - 13651311 cagggtctcactctgtcacccaggctggagtgcagtggtgcaatcac-tggtcactgcggccttgaagccttgacctcccaggctcaagtgatcctcccacctcagcctcccaggtagctggaaccacagg-tgcacaccaccatgcccagctaatttt-ttgtatttctgtagaggtggggttttgccatgttgcccgagctggt--------------ctcaaatgatccccctgcctcggcctcccaga-----------------------------------------atgttgggatgacaggtttgagccatcacTCAATCCCAAAAGTGTTGGGATTACAGGGT-------------------T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3471144 274 - 108792865 cagggtctcactctgtcacccaggctggagtgcagtggtgaggtcacttggtcactgc--------atccttgacctcccaggctcaggtga---tcccacctcagcctcccaggtagctagggccacaggccacacaccaccacaccctgctggtttt-ttgtatttttgtagaggtgggatgttgccacc---tccaggttgatctctaactcctgcgcccaggtgat-cgcctgccttagtctcccaaag----------------------------------------------------------------------------------tgttgggattacaggcttgagccacAACACTGGTCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118716 279 - 7082604 cagggtctcactctgtcacccaggctgcagtgcagtggtgaggtcac-tggccactgc--------agccttgacctcccaggctcaggtgatcctcccacctcagcctcccaggtagctggggccatagg-tgcatgccaccacaccctgctggttttgttgtatttttttagaggtggggtttcgctacattgtccaggctggtgtgtaactcctgggcccaggtgat-cacctgccttagcctcccaacg----------------------------------------------------------------------------------tgttgggattacaggcttgagccaccacacTAGTCCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604261 279 + 5243153 caggttctcactctgtcacccaagctggagtgcagtggtgaggtcac-tggtcactgc--------agccttgacttcctaggctcaagtgatcctcccacctcagcctcccaggtagctggggccacagg-tgcacgccaccacaccttgctgatttttttgtatttttgtagaggtggggtttcgtcacgttgtccaggctggtctctaactcctgggcccaggtgat-cgcctgccttaacctcccaaag----------------------------------------------------------------------------------tgttgggattacaggcttgagccaccacacTGGTCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3347993 275 + 7587287 cagggt----ctctgtcacccaggctggagtgcagtggtgagatcac-tggtcactgc--------agccttgacctcccatgctcaggtgatcctcccacctcagcctcccaggtagctggggccacagg-tgcacgccaccacaccctgctgatttttttgtatttttgtagaggtggggtttcgccacgttgtccagtctggtctctaacacctgggcccaggtgat-cgcctgccttagcctcccaaaa----------------------------------------------------------------------------------tgttgggattacaggcttgagccaccacacTGGTCTT i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e mm10.chr12 91425149 153 - 120129022 I e canFam3.chr17 2048589 1 + 64289059 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e dasNov3.JH580157 583160 2 + 2232271 I e otoGar3.GL873658 2550155 0 + 5252280 C a score=118360.000000 s hg38.chr2_KI270769v1_alt 66371 12 + 120616 GATGCTTTTCTT------ s panTro5.chr2A 3528181 12 + 111504155 GATGCTTGTCTT------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388923 12 + 114371477 GATGCTTGTCTT------ i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266819 12 + 637652 GATGCTTTTCTT------ i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062756 12 + 81552678 gaTGCTTTTCTT------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3326143 12 + 108979918 GATGCTTTTCTT------ i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037281 12 - 111193037 GATGCTTTTCTT------ i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429945 12 + 3644372 GATGCTTTTCTT------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3385179 12 - 10304083 GATGCTTTTCTT------ i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480595 12 - 107702431 GATGCTTTTCTT------ i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017983 12 + 1565135 GATGCTTTTCTT------ i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382635 12 - 13651311 GATGCTTTTCTT------ i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3471418 12 - 108792865 GATGCTTTTCTG------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3118995 12 - 7082604 GATGCTTTTCTT------ i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604540 13 + 5243153 GATGCTTTTCTT-----A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3348268 12 + 7587287 GATGCTTTTTTA------ i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2550155 18 + 5252280 AATGCTTTTCTAAAAAGA i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e mm10.chr12 91425149 153 - 120129022 I e canFam3.chr17 2048589 1 + 64289059 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e dasNov3.JH580157 583160 2 + 2232271 I a score=13923.000000 s hg38.chr2_KI270769v1_alt 66383 1 + 120616 A s panTro5.chr2A 3528193 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388935 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266831 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062768 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3326155 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037293 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429957 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3385191 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480607 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017995 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382647 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3471430 1 - 108792865 A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3119007 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604553 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3348280 1 + 7587287 A i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2550173 1 + 5252280 A i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2048590 1 + 64289059 A i canFam3.chr17 I 1 C 0 e micMur3.chr8 2658097 977 - 159902609 I e mm10.chr12 91425149 153 - 120129022 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e dasNov3.JH580157 583160 2 + 2232271 I a score=1125316.000000 s hg38.chr2_KI270769v1_alt 66384 97 + 120616 AAAAACATATTCCCCATGTATGATGTCTGCAGATACTTCAAGAACATCATAAACACCACTTTCACCATCAGCTGG-GAGCAGA-GTCCCTCCCCATTCA s panTro5.chr2A 3528194 97 + 111504155 AAAAACATATTCCCCATGTATGATGTCTGCAGATACTTCAAGAACATCATAAACACCACTTTCACCATCAGCTGG-GAGCAGA-GTCCCTCCCCATTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3388936 97 + 114371477 AAAAACATATTCCCCATGTATGATGTCTGCAGATACTTCAAGAACATCATAAACACCACTTTCACCATCAGCTGG-GAGCAGA-GTCCCTCCCCATTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266832 97 + 637652 AAAAACATATTCCCCATGTATCATGTCTGCAGATACTTCAAGAACATCATAAACACCACTTTCACCATCAGCTGG-GAGCAGA-GTCCCTCCCCATTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062769 97 + 81552678 AAAAACATATTCCCTATGTATGATGTCTGCAGATACTTCAAGAACATCATAAACACCACTTTCACCATCAGCTGG-GAGCAGA-GTCCCTCCCCATTCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3326156 97 + 108979918 AAAAACATACTTCCTATGTATGATGTCTGCAGATACTTCAAGAACATCATAAACACCACTTTCACCATCAGCGGG-GAGCAGA-GTCCCTGCCCGTTCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037294 97 - 111193037 AAAAACATACTTCCTATGTATGATGTCTGCAGATACTTCAAGAACATCATAAACACCACTTTCACCATCAGCGGG-GAGCAGA-GTCCCTGCCCGTTCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3429958 97 + 3644372 AAAAACATACTCCCTATGTATGATGTCTGCAGATACTTCAAGAACATCATAAACACCACTTTCACCATCAGCGGG-GAGCAGA-GTCCCTGCCCGTTCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3385192 97 - 10304083 AAGAACATACTCCCTATGTATGATATCTGCAGATACTTCAAGAACATCAGAAACACCACTTTCACCATCAGCGGG-GAGCAGA-GTCCCTGCCCGTTCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480608 97 - 107702431 AAAAACATACTCCCTATGTATGATGTCTGCAGATACTTCAAGAACATCATAAACACCACTTTCACCATCAGCTGG-GAGCAGA-GTCCCTGCCCGTTCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1017996 97 + 1565135 AAAAACATACTCCCTATGTATGATGTCTGCAGATACTTCAAGAACATCATAAACACCACTTTCACCATCAGCGGG-GAGCAGA-GTCCCTGCCCGTTCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382648 97 - 13651311 AAAAACATATTCCCTATGTATGATGTCTGCAGATACTTCAAGAACATGATAAACACCACTTTCACCATCAGCTGG-GAGCAGA-GTCCCTGCCTGTTCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3471431 97 - 108792865 AAAAATATATTCTTTATGAATGATGTCTGCAAACACTTCAAGAGCATCCTAAACACCACCCTCACCGTCAGCTGG-GAGCAGA-GGCCCTGCCCATTCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3119008 97 - 7082604 AAAAACATATTCTCTATGTCTGATGTCTACAAATACTTGAAGAACATCCTAAACACCACGTTCACCATCAGCTAG-GAGCAGA-GTCCCTGCCTATTCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604554 97 + 5243153 AAAAACATATTCTGTATGTATGATGTCTGCAAATACTTCAAGAACATCCTAAACATCACTTTCACCCTCAGCTAG-GAGCAGA-GTGTCTGCCCATTCG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3348281 97 + 7587287 AAAAACATATTCTCTATGTATGATGTCTGCAAATACTTCAAGAACATCCTAAGCACCACTTTCACCATCAGCTAG-GAGCAGA-GTCCCTGTTCATTCA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2550174 93 + 5252280 AAAAACATGCT---TATGTACAATGTCTG-AGATGCTTTATGAGCATCATAAATCCCAATCCCACCCTCACCTGG-GGGCAGA-GTCCCCAGCCACTGA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2048591 91 + 64289059 GAAAACAGCTACCCTGTGTCTGATGTCTCTGAGTGCTTTATGAGCATCATAAACCCAAC--TCCACATCAGCTAG-----AGG-ATGGCTTCCCCTCTG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 583162 99 + 2232271 AAAAAAAACTTACTTATGTATGATGTCTCTTAATGCTTTATGAGCATCATAAACCCAAATTCCCCCATCACCTAGAAAACAGATTTCCCTCTTCATTTA i dasNov3.JH580157 I 2 I 32 e micMur3.chr8 2658097 977 - 159902609 I e mm10.chr12 91425149 153 - 120129022 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I a score=191729.000000 s hg38.chr2_KI270769v1_alt 66481 22 + 120616 CTGTCGCCCCACGCCATAGGGA s panTro5.chr2A 3528291 22 + 111504155 CTGTCGCCCCATGCCATAGGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3389033 22 + 114371477 CTGTCGCCCCATGCCATAGGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266929 22 + 637652 CTGTCGCCCCATGCCATAGGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062866 22 + 81552678 CTGTCACCCCATGCCATAGGGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3326253 22 + 108979918 TTGTCACCCCACGCCATAGGGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037391 22 - 111193037 TTGTCACCCCACGCCATAGGGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3430055 22 + 3644372 TTGTCACCCCACGCCATAGGGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3385289 22 - 10304083 TTGTCACCCCACACCATAGGGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480705 22 - 107702431 TTGTCACCCCACGCCATAGGGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1018093 22 + 1565135 TTGTCACCCCACGCCATAGGGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382745 22 - 13651311 TTGTCACCCCACGCCATAGGGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3471528 18 - 108792865 TTGTCACCCCATGTCATA---- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3119105 18 - 7082604 TTGTCACCCCATGTCATA---- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604651 18 + 5243153 TTGTCACCCCATGTCATA---- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3348378 18 + 7587287 TTGTCACCCCATGTCATA---- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2550267 22 + 5252280 CCGTCACCCTGTGTGACAGTGA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2048682 21 + 64289059 CTG-CGCCTCCCTGTGTAGGGA i canFam3.chr17 C 0 I 9 e micMur3.chr8 2658097 977 - 159902609 I e mm10.chr12 91425149 153 - 120129022 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e dasNov3.JH580157 583261 32 + 2232271 I a score=7800.000000 s hg38.chr2_KI270769v1_alt 66503 1 + 120616 C s panTro5.chr2A 3528313 1 + 111504155 C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3389055 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266951 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062888 1 + 81552678 C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3326275 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037413 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3430077 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3385311 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480727 1 - 107702431 C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1018115 1 + 1565135 C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382767 1 - 13651311 C i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2550289 1 + 5252280 C i otoGar3.GL873658 C 0 I 15 e micMur3.chr8 2658097 977 - 159902609 I e mm10.chr12 91425149 153 - 120129022 I e canFam3.chr17 2048703 9 + 64289059 I e saiBol1.JH378218 3119123 0 - 7082604 C e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e dasNov3.JH580157 583261 32 + 2232271 I e cebCap1.NW_016107454v1 604669 0 + 5243153 C e aotNan1.NW_018509326v1 3348396 0 + 7587287 C e calJac3.chr14 3471546 0 - 108792865 C a score=3885659.000000 s hg38.chr2_KI270769v1_alt 66504 444 + 120616 TTGGTGATGTTTACAGTGTGTCCCTGTGggcgaacgggataaggaaaagatggtgcacatacactgtggaata-ctacgcagccgt-aaaaaaagaaccaaatcatgttgtttgcagcaacatggatacagctggaggccattatc-ctaagtgaattaacacagaaacagaaaaccaaatagtgaatgttttcacatgtaagtagaagctaaacattggattcacatgga----------caaaaaatag--accagagactaccagtgg-g-gggagggtgggatgggaggaagagctgaaaaatgatctgttgggtcccatgctgactacctgggtgatggcttcaatcgta-ccccaacctcagcatcacccagtatacccaggt----aacctgcacacatacctcctgaatctaaaataaagttgcaatttaaaataaaTAAAATATCAAATGTTTTAAT s panTro5.chr2A 3528314 444 + 111504155 TTGGTGATGTTTACAGTGTGTCCCTGTGggtgaacgggataaggaaaagatggtgcacatacaccgtggaata-ctacgcagccat-aaaaaaagaaccaaatcatgttgtttgcagcaacatggatacagctggaggccattatc-ctaagtgaattaacacagaaacagaaaaccaaatagtgaatgttttcacatgtaagtagaagctaaacattggattcacatgga----------caaaaaatag--accagagactaccagtgg-g-gggagggtgggatgggaggaagggctgaaaaatgatctgttgggtcccatgctgactacctgggtgatggcttcaatcgta-ccccaacctcagcatcacccagtatacccaggt----aacctgcacacatacctcctgaatctaaaataaagttgcaatttaaaataaataaaATATCAAATGTTTTAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3389056 444 + 114371477 TTGGTGATGTTTACAGTGTGTCCCTGTGggtgaacgggataaggaaaagatggtgcacatacaccgtggaata-ctacgcagccat-aaaaaaagaaccaaatcatgttgtttgcagcaacatggatacagctggaggccattatc-ctaagtgaattaacacagaaacagaaaaccaaatagtgaatgttttcacatgtaagcagaagctaaacattggattcacatgga----------caaaaaatag--accagagactaccagtgg-g-gggagggtgggatgggaggaagggctgaaaaatgatctgttgggtcccatgctgactacctgggtgatggcttcaatcgta-ccccaacctcagcatcacccagtatacccaggt----aacctgcacacatacctcctgaatctaaaataaagttgcaatttaaaataaataaaATATCAAATGTTTTAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 266952 427 + 637652 TTGGTGATGTTTACAGTGTGTCCCTGTGggtgaactggataaggaaaagatggtgcacatacaccgtggaata-ctacgtagccat-aaaaaaagaaccaaatcatgttgtttgcagcaacatggatacaactggaggccattatc-ctaagtgaattaacagagaaacagaaaaccaaatagtgaatgttttcacatgtaagtagaagctaaacattggattcacatgga----------caaaaaatag--accagggactaccagttg-g--------------gggaggaagggctgaaaaatgatctgttgggtcccatgctgactacctgggtgatggcttcaatcgta-ccccaacctcagcatcacccagtatacccaggt----aacctgcacacatacctcctgaatctaaaataaagttgcaaTTTA----AAATGAAATATCAAATGTTTTAAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3062889 425 + 81552678 -TGGTGATGTTTACAGTGTGTCCCTGTGggtgaactggataaggaaaagatggtgcacatacaccgtggaata-ctacacagccatgaaaaaaagaaccaaatcatgtcctttgcagcaacatggatgcagctggaggccattatg-ctaagtgaattaacacagaaacagaaaaccaaatagtgaatgttttcacatgtaagtaggagctaaacattggattcacatgga----------caaaaaatagacaccagggactagcagtgg-gggggagggtagaatgggaggaagggctggaaaatgatctgctgggtcccat-------------------gcttcaattgtatccccaacctcagcatcacccagtatacccaggt----aacctgaacacatgcctcctgaatctaaaataaagttgcaattta----aaataaaaTATCAAATGTTTTAAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3326276 452 + 108979918 -TGGCGATGTTTACAGTGTGTCCCTGTGggtgaactgggtaaggaaaagacggtgcacatacaccatggaata-ctacgcagtcat-aaaaaaagaaccaaatcatgtcctttgtagcaacgtggatgcagctggaggccattatc-ctaagtgaattaacacagaaacagaaaaccaaatagtgaatgttttcacttataagtagaagctaaacattggattcacatggacctacagaagcaaaaaatagacaccagggactaccagtcg-g-gggagggtgggatgggaggaacggctgaaaaacgatctgttgggtcccacgctgactacccgggtgatggcttcaatcatacccccaacctcagcatcacccagtaagcccaggt----aacctgcacacgtaccacctgaatctaaaatgaagttgcaattta----aaataaaaTATCAAATGTTTTAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037414 452 - 111193037 -TGGCGATGTTTACAGTGTGTCCCTGTGggtgaactgggtaaggaaaagacggtgcacatacaccatggaata-ctacgcagtcat-aaaaaaagaaccaaatcatgtcctttgtagcaacgtggatgcagctggaggccattatc-ctaagtgaattaacacagaaacagaaaaccaaatagtgaatgttttcacttataagtagaagctaaacattggattcacatggacctacagaagcaaaaaatagacaccagggactaccagtcg-g-gggagggtgggatgggaggaacggctgaaaaacgatctgttgggtcccacgctgactacccgggtgatggcttcaatcatacccccaacctcagcatcacccagtaagcccaggt----aacctgcacacgtaccacctgaatctaaaatgaagttgcaattta----aaataaaaTATCAAATGTTTTAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3430078 452 + 3644372 -TGGCGATGTTTACAGTGTGTCCCTGTGggtgaactgggtaaggaaaagacggtgcacatacaccatggaata-ctacgcagtcat-aaaaaaagaaccaaatcatgtcctttgtagcaacgtggatgcagctggaggccattatc-ctaagtgaattaacacagaaacagaaaaccaaatagtgaatgttttcacttataagtagaagctaaacattggattcacatggacctacagaagcaaaaaatagacaccagggactaccagtcg-g-gggagggtgggatgggaggaacggctgaaaaacgatctgttgggtcccacgctgactacccgggtgatggcttcaatcatacccccaacctcagcatcacccagtaagcccaggt----aacctgcacacgtaccacctgaatctaaaatgaagttgcaattta----aaataaaaTATCAAATGTTTTAAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3385312 453 - 10304083 -TGACGATGTTTACAGTGTGTCCCTGTGggtgaactgggtaaggaaaagacggtgcacatacaccgtggaata-ctatgcagtcat-aaaaaaagagccaaatcatgtcctttgtagcaacgtggatgcagctggaggccattatcactaagtgaattaacacagaaacagaaaaccaaatagtaaatgttttcacttataagtagaagctaaacattggattcacatggacctacagaagcaaaaaatagacaccagagactaccagtcg-g-gggagggtgggatgggaggaacggctgaaaaacgatctgttgggtcccacgctgactacctgggtgatggcttcaatcatacccccaacctcagcatcacccagtaagcccaggt----aacctgcacacataccgcctgaatctaaaataaagttgcgattta----aaataaaaTATCAAATGTTTTAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3480728 453 - 107702431 -TGGCGATGTTTACAGTGTGTCCCTGTGggtgaactgggtaaggaaaagacggtgcacatacactgtggaata-gtatgcaatcataaaaaaaagaaccaaatcatgtccttcgtagcaacgtggatgcagctggaggccattatc-ctaactgaattaacacagaaacagaaaaccaaatagtaaatgttttcacttataagtagaagctaaacattggatttacatggatctacagaagccaaaaatagacaccagggactaccagtcg-g-gggagggtgggattggaggaaggggtgaaaaacgatctgttgggtcccacgctgactacctggatgatggcctcaatcatacccccaacctcagcatcacccgctatgcccaggt----aacctgcacacgtagcacctgaatctaaaatgaagttgcaattta----aaataaaaTATCACATGTTTTAAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1018116 451 + 1565135 -TGGCGATGTTTACAGTGTGTCCCTGTGggtgaactgggtaaggaaaagacggtgcacatacaccgtggaata-ctacacagtcat-aaaaaaagaaccaaatcatgtcctttgtagcaacgtggatgcagctggaggccattatc-ctaagtgaattaacacagaaacagaaaaccaaatagtgaatgttttcacttataagtaggaggtaaacattggattcacatggacctacagaagccaaaaatagaca-cagtgactaccagtcg-g-gggagggtgggatgggaggaacggctgaaaaacgacctgttgggtcccacgctgactacctgggtgatggcttcaatcatacccccaacctcagcatcacccagtaagcccaggt----aacctgcacacataccgcctgaatctaaaatgaagttgcaattta----aaataaaaTATCAAATGTTTTAAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3382768 451 - 13651311 -TGGTGATGTTTACAGTGTGTCCCTGTGggtgaactgggtaaggaaaagatggtgcccatacaccgtggaata-ctacgcagtcat-aaaaaaagaaccagatcatgtcctttgtagcaacgtggatgcagctggaggccattatc-ctaagtgaattaacacagaaacagaaaagcaaatagtgaatgttttcagttgtaagtaggagctaaacattggattcacatggacctacagaagcaaaaaatagacaccagggactaccagtcg-c-gggagggtgggatgggaggaaaggctgaaaaacaatctgttgggtcccacactgactacctgg-tgatggcttcaatcacacccccaacctcagcgtcacccagtatgcccaggt----aacctgcacacgtaccgcctgaatctaaaatgaagttgcaattta----aaataaaaTATCAAATGTTTTAAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3471546 453 - 108792865 -GGGTGATGTTGAAAATGTGTCCCTGTGggtgaactggatgaggaaaagatagtgcacgtaccctgtgaaata-ctattcagccat--cagaaagaaccatgtcgcgtcctttgcagcaacatggatgcagctggaggccgtgatc-ctaagtgaatcagcacagaaacag--aaccaagtactgactgttttcactcgtaagtgggagctaaacaccggattcacctggatgtaccgaagcaaaagataaacaccagggactaccagcgg---gggagggcgggctggg-ggaagggttgaaaaacgacctagtggatcccacgctgaccacctgggtgttggcttcagctgcacccccactctcagcatcacacaggatactcaggtaac-aacctgtgcacgtacctcctgaatctaaaataaagttgcaaTTTACAATAAATAAAATATCAAATG-TCTAAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3119123 456 - 7082604 -GGGGGATGTTGAAAATGTGTCCCCGTGggtgaaccggacgaggagaagatggtgcacatacactgtgaaatacccactcagccgt--cagaaagaaccacaccttgtcctttgcagccacatggatgtagctggaagccatgatc-ctaagtgagtcaacacagaaacagaaaaccaaatactgaatgttttcactcgtaagtgggagctaaacagtggactcacgtggacatacagaagcagaaaataaacaccagggatgaccagcgg-a-gggagcctggggtggg-ggaagggttgaaaaacgacctgttggatcccatgctgaccacctgggtgatggcttcagctgca-gcccaccctcagcatcacacagtatactcaggtcacaaacctctgcacatacctcctgaatctaaaataaagttgc-atttacaataaagaaaaTATCAAATG-TTTAAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 604669 456 + 5243153 -GGGTGATGCTGAAAATGTGTCCCCGTGggtgaactggatgaggaaaagatagtgcacatacgctgtgaaata-ctattcagccat--cagaaagaaccacatcgtgtcctttgcagcaacatggatgcagctggcagccatgatc-ctaagtcaatcaacacagaaacagaaaaccaaatactgaatgttttcactcataagtgggagctaaacattggattcacgtggacatacagaagccaaaaataaacaccagggactaccagcag-g-gggagggcggg-tggg-ggaagggttgaaaaacgacctgttggatcccatgctgaccacctgggtgatggcttcagctgcacccccaccctcagcatcacacagcatactcaggtagcaagcctgcgcacgtacctcctgaatctaaaataaagttgcaaTTTACAATAAAGAAAATATCAAATG-TTTAAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3348396 438 + 7587287 -GGGTAATGTTGAAAATGTGTCCCCGTGggagaactggatgaggaaaaggtagtgcacatacactgtgaaata-ctattcagccat--cagagagaaccacgttgtgccctttgcagcaacatggaagcagctggaggccatgatc-ctaagtgaatcaacacagaaacagaaacccaaatactgaatattttcactcataagtgggagctaaacattggattcacatggacatacagaagcaaaaaataaacaccagggactaccagcgggg-aggagggcggggcggg-ggaagggtt-aaaaacgacccattggatcccatgctgaccacctgggtgatggcttcagctgcacccccaccctcagcatcacacagtatgctccagtaacaaacctgcacacgt-------------------aAGTTGCAATTTGCAATAAATAAAATATCAAATG-TTAAAT i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e mm10.chr12 91425149 153 - 120129022 I e canFam3.chr17 2048703 9 + 64289059 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e dasNov3.JH580157 583261 32 + 2232271 I e otoGar3.GL873658 2550290 15 + 5252280 I a score=34422.000000 s hg38.chr2_KI270769v1_alt 66948 4 + 120616 ATTT s panTro5.chr2A 3528758 4 + 111504155 ATTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3389500 4 + 114371477 ATTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 267379 4 + 637652 ATTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3063314 4 + 81552678 ATTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3326728 4 + 108979918 ATTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037866 4 - 111193037 ATTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3430530 4 + 3644372 ATTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3385765 4 - 10304083 GTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3481181 4 - 107702431 ATTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1018567 4 + 1565135 ATTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3383219 4 - 13651311 ATTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3471999 4 - 108792865 ATTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3119579 4 - 7082604 ATCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 605125 4 + 5243153 ATTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3348834 3 + 7587287 AT-T i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 583293 4 + 2232271 ATGT i dasNov3.JH580157 I 32 C 0 e micMur3.chr8 2658097 977 - 159902609 I e mm10.chr12 91425149 153 - 120129022 I e canFam3.chr17 2048703 9 + 64289059 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e otoGar3.GL873658 2550290 15 + 5252280 I a score=79343.000000 s hg38.chr2_KI270769v1_alt 66952 12 + 120616 TTT-AAAAGTATG s panTro5.chr2A 3528762 12 + 111504155 TTT-AAAAGTATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3389504 12 + 114371477 TTT-AAAAGTATG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 267383 12 + 637652 TTT-AAAAGTGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3063318 12 + 81552678 TTT-AAAAGTGTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3326732 11 + 108979918 TTT-T-AAATGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037870 11 - 111193037 TTT-T-AAATGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3430534 11 + 3644372 TTT-T-AAATGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3385769 12 - 10304083 TTT-TAAAATGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3481185 12 - 107702431 TTTAA-AAATGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1018571 11 + 1565135 TTT-T-AAATGTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3383223 12 - 13651311 TTT-AAAAATATG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3472003 12 - 108792865 TTT-AGAAGTTTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3119583 12 - 7082604 TTT-TAAAGTTTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 605129 12 + 5243153 TTT-AAAAGTTTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3348837 12 + 7587287 TTT-AAAAGTTTG i aotNan1.NW_018509326v1 C 0 C 0 s canFam3.chr17 2048712 11 + 64289059 -TT-TAAAATGTG i canFam3.chr17 I 9 I 4 s dasNov3.JH580157 583297 12 + 2232271 TTT-TAAAATATG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e mm10.chr12 91425149 153 - 120129022 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e otoGar3.GL873658 2550290 15 + 5252280 I a score=431319.000000 s hg38.chr2_KI270769v1_alt 66964 32 + 120616 ----TGTG-AACATCCCTTGACAAATT-GTTTTCATCC s panTro5.chr2A 3528774 32 + 111504155 ----TGTG-AACATCCCTTGACAAATT-GTTTTCATCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3389516 32 + 114371477 ----TGTG-AACATCCCTTGACAAATT-GTTTTCATCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 267395 32 + 637652 ----TGTG-AACATCCCTTGACAAATT-GTTTTCATCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3063330 32 + 81552678 ----TGTG-AACATCCCTTGACAAATT-GTTTTCATCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3326743 32 + 108979918 ----TGTG-AACATCCCTTGACAAATT-GTTTTCATCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037881 32 - 111193037 ----TGTG-AACATCCCTTGACAAATT-GTTTTCATCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3430545 32 + 3644372 ----TGTG-AACATCCCTTGACAAATT-GTTTTCATCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3385781 32 - 10304083 ----TGTG-AACATACCTTGACAAATT-GTTTTCATCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3481197 32 - 107702431 ----TGTG-AACATCCCTTGACAAATT-GTTTTCATCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1018582 32 + 1565135 ----TGTG-AACATCCCTTGACAAATT-GTTTTCATCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3383235 32 - 13651311 ----TGTG-AACATCCCTTGACAAATT-GTTTTCATCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3472015 32 - 108792865 ----TGTG-AACATCCCTTGACAGACT-GTTTTCATCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3119595 32 - 7082604 ----TGTG-AACATCCCTTGACAGATT-GTTTTCATCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 605141 32 + 5243153 ----TGTG-AACATCCCTTGACAGATT-GTTTTCATCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3348849 32 + 7587287 ----TGTG-AACATCCCTTGACAGATT-GTTTTCATCC i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91425302 33 - 120129022 ----TGTG-AACATTCCTTGCCTGATTGGTTTTCACCA i mm10.chr12 I 153 C 0 s canFam3.chr17 2048727 34 + 64289059 ----TGTGAAACATTCCTTGACAAATTGGCTTTCATAC i canFam3.chr17 I 4 C 0 s dasNov3.JH580157 583309 38 + 2232271 TCCATATGAAACATTCCTTGACAAGTTGGTTTTCATAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I e otoGar3.GL873658 2550290 15 + 5252280 I a score=644165.000000 s hg38.chr2_KI270769v1_alt 66996 58 + 120616 AGAGAAATTTGCTGTACTGAGATTATATTATAACAAAGTCTTAGACAAAAATTGGTTC- s panTro5.chr2A 3528806 58 + 111504155 AGAGAAATTTGCTGTACTGAGAATATATTATAACAAAGTCTTAGACAAAAATTGGTTC- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3389548 58 + 114371477 AGAGAAATTTGCTGTACTGAGAATATATTATAACAAAGTCTTAGACAAAAATTGGTTC- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 267427 58 + 637652 AGAGAAATTTGCTGTACTGAGAATACATTATAACAAAGTCTTAGACAAAAATTGGTTC- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3063362 53 + 81552678 AGAGAAATGTGCTGTACTGAGAA-----TATAACAAAGTCTTAGACAAAAATTTGTTC- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3326775 58 + 108979918 AGAGAAATTTGCTGTACTGAGAATATATTTTAACAAAGTCTTAGACAAAAATTGGTTC- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037913 58 - 111193037 AGAGAAATTTGCTGTACTGAGAATATATTTTAACAAAGTCTTAGACAAAAATTGGTTC- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3430577 58 + 3644372 AGAGAAATTTGCTGTACTGAGAATATATTTTAACAAAGTCTTAGACAAAAATTGGTTC- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3385813 53 - 10304083 AGAGAAATTTGCTGTACTGAG-----ATTATAACAAAGTCTTAGACAAAAATTGGTTC- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3481229 58 - 107702431 AGAGAAATTTGCTGTACTGAGCATATATTATAACAAAGTCTTAGACAAAAATTGGTTC- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1018614 58 + 1565135 AGAGAAATTTGCTGTACTGAGAATATATTATAACAAAGTCTTAGACAAAAATTAGTTC- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3383267 58 - 13651311 AGAGAAATTTGCTGTACTGAGAATATATTATAACAAAGTCTCAGACAAAAATTGGTTC- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3472047 57 - 108792865 AGGGAAATTTGCTGAACTGAGAATATATCATCACAAAGTC-CAGACACAAATTCCTTC- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3119627 57 - 7082604 AGGGAAATCTGCTGAACTGAGAATATATTATAACAAAGTC-CAGACACAAACTCATTC- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 605173 57 + 5243153 GGGGACATTTGCTGAGCTGAGAATATATTACAACAAAGTC-CAGACACAAATTCATTC- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3348881 57 + 7587287 AGGGAAATTTGCTGAACTGAGAATATATTATAACAAAGTC-CAGACACAAATTGATTC- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2550305 57 + 5252280 AGTGAAATTTGCTGTACCAAGAGTATACCATGAAAAAGTC-TAGCTGCAAATACGTCT- i otoGar3.GL873658 I 15 C 0 s mm10.chr12 91425335 55 - 120129022 AGAGAAATTTGCTGTGTCTGAAATATATGAGGACAGTG---TAGCCACAAATCCACTT- i mm10.chr12 C 0 C 0 s canFam3.chr17 2048761 57 + 64289059 AGAGTAATCTGCTTCTCTTGGAATATATTATGACAAAGTC-TAAAAGCAAATTCATTT- i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 583347 57 + 2232271 AGAGAAATTTGCT-TACCTAGAATATATTAAGGCAAACTC-TAGGCACAAATTCACTTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2658097 977 - 159902609 I e proCoq1.NW_012151163v1 969805 1143 + 1238772 I a score=1880687.000000 s hg38.chr2_KI270769v1_alt 67054 112 + 120616 CCATGATTTTGTCCTTCTCATTTGGAATGATTGCAGATCCTGGCCAATTTGGAGCAAGGCTTAGCAGAAGACGGCGGCATGAGCAGCGTGACTCAGGAGGGCAGACAAGGTG s panTro5.chr2A 3528864 112 + 111504155 CCATGATTTTGTCCTTCTCATTTGGAATGATTGCAGATCCTGGCCAATTTGGAGCAAGGCTTAGCAGAAGACGGCGGCATAAGCAGCGTGACTCAGGAGGGCAGACAAGGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3389606 112 + 114371477 CCATGATTTTGTCCTTCTCATTTGGAATGATTGCAGATCCTGGCCAATTTGGAGCAAGGCTTAGCAGAAGACGGCGGCATGAGCAGCGTGACTCAGGAGGGCAGACAAGGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 267485 112 + 637652 CCATGATTTTGTCCTTCTCATTTGGAATGATTGCAGATCCTGGCCAATTTGGAGCAAGGCTTAGCAGAAGACGGCGGCATGAGCGGCGTGACTCAGGAGGGCAGACAAGGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3063415 112 + 81552678 TGATGATTTTGTCCTTCTCATTTGGAATGATTGCAGATCCTGGCCAATTTGGAGCAAGGCTTAGCAGAAGACGGCGGCATGAGCAGCGTGACTCAGGAGGGCAGACAAGGTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3326833 112 + 108979918 CCATGATTTTGTCCTTCTCATTTGGAATGATTGCAGATCCTGGCCAATTTGGAGCAAGGCTTAGCAGAAGACGGGGCCATGAGCAGCGTGACTCAGGAGGGCAGACAAGGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5037971 112 - 111193037 CCATGATTTTGTCCTTCTCATTTGGAATGATTGCAGATCCTGGCCAATTTGGAGCAAGGCTTAGCAGAAGACGGGGCCATGAGCAGCGTGACTCAGGAGGGCAGACAAGGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3430635 112 + 3644372 CCATGATTTTGTCCTTCTCATTTGGAATGATTGCAGATCCTGGCCAATTTGGAGCAAGGCTTAGCAGAAGACGGGGCCATGAGCAGCGTGACTCAGGAGGGCAGACAAGGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3385866 112 - 10304083 CCATGATTTTGTCCTTCTCATTTGGAATGATTGCAGATCCTGGCCAATTTGGAGCAAGGCTTAGCAGAAGACGGGGCCATGAGCAGCGTGACTCAGGAGGGCAGACAAGGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3481287 112 - 107702431 CCATGATTTTGTCCTTGTCATTTGGAATGATTGCAGATCCTGGCCAATCTGGAGCAAGGCTTAGCAGAAGACGGGGCCGTGAGCAGCGCGACTGAGGAGGGCAGACAAGGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1018672 112 + 1565135 CCATGATTTTGTCCTTCTCATTTGGAATGATTGCAGATCCTGGCCAATTTGGAGCAAGGCTTAGCAGAAGACGGGGGCATGAGCAGCGTGACTCAGGAGGGCAGACAAGGTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3383325 112 - 13651311 TCATGATTTTGTCCTTCTCATTTGGAATGATTGCAGATCCTGGTCAATTTGGAGCAAGGCTTAGCAGAAGACGGGGCCACGAGCAGCGTGACTCAGGAGGGCAGACAAGGTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3472104 111 - 108792865 CCATGATTTTGTCCTTCTCATTTGGAATG-TTGCAGATCCTGGCCAATTTGGAGCAAGGCTTCGCAGAAGATGGCAGCATGAGCAGTGTGACTCTGGAGGGCAGACAAGGTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3119684 108 - 7082604 CCATGACTTTGTC---TTCATTTGGAATG-TTGCAGATCCTGGTCAATTTGGAGCAAGGCTTGGCAGAAGATGGCGGCGCGAGCGGTGTGACTCCGGAGGGCAGACAAGGTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 605230 108 + 5243153 CCATGATTTTGTC---CTCATTTGGAATG-TTGCAGATCCTGGCCAATTTGGAGCAAGGCTTAGCAGAAGATGGCGGCACGAGCAGTGTGACTCCGGAGGGCAGACAAGGTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3348938 111 + 7587287 CCATGATTTTGTCCTTCTCATTTGGAATG-TTGCAGATCCTGGCCAATTTGGAGCAAGGCTTAGCAGAAGATGGCGGCATGAGCAGTGTGACTCAGGAGGGCAGACAAGGTA i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2659074 112 - 159902609 CCATGGTCTTGTCATTCTCGTTTGACATGATTGCAGATCCTGGCCAATTTGGAGCGCGGCTTGGCTGAGGACGGCAGCATGAGCAACATGACTCCGGAGAACAGACAAGGTG i micMur3.chr8 I 977 I 2250 s proCoq1.NW_012151163v1 970948 112 + 1238772 CCATGGTTTTGTCATTCTCGTTTGACGTGATTGCAGATCCTGACCAATTTGGAGCACGGCTTGGCTGAGGACGGCAGCATGAGCAACATGAGTCCGGAGAACAGACAAGGTG i proCoq1.NW_012151163v1 I 1143 I 2131 s otoGar3.GL873658 2550362 105 + 5252280 TCATGGT-------TTATCATTTGAAATGATTGCAGATCCTGAGCCACTTGGAGCATGGCTTGGCTGAAGACGGCAGCATCAGCAGCATGACCCCAGAGCACAGGCAAGGTG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91425390 110 - 120129022 --ACAGTTTTGTTGTCCTTGTTTGAAATGACTGCAGATCTTGGCCAACTTGGAGCAAGGCTTAGCTGAAGATGGTGGTCTGAGCAGCGTCACCCAGGAAAGCAGGCAAGGTG i mm10.chr12 C 0 I 2 s canFam3.chr17 2048819 112 + 64289059 TTATGATTTTGTCGTTCTTATTTGGAATTACTGCAGATCCTGACAAATTTGGAGCAAGGCTTAGCTGAAGACGGGAGCATGAGCAGCATCACACAGGAGAACAGACAAGGTC i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 583404 112 + 2232271 TTATAATTTTGTTGTTCTTATTTTCAATTACCACAGATCCTAACAAATTTGGAGCAAGGCTTAGCTGAAGATGGGAGCATGAGTAACATCACACAAGAGAACAGACAAGGTT i dasNov3.JH580157 C 0 C 0 a score=317689.000000 s hg38.chr2_KI270769v1_alt 67166 34 + 120616 GGTCGGCCGGACTTTGCTG-ACTAGATGCTTC-TCG s panTro5.chr2A 3528976 34 + 111504155 GGTCGGCCGGACTTTGCTG-ACTAGATGCTTC-TCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3389718 34 + 114371477 GGTCGGCCGGACTTTGCTG-ACTAGATGCTTC-TCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 267597 34 + 637652 GGTCGGCCGGACTTTGCTG-ACTAGATGCTTC-GCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3063527 34 + 81552678 GGTCGGCCGGACTTTGCTG-ACTAGATGCTTC-CCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3326945 34 + 108979918 GGTCGGCTGGACTTTGCTG-ACTAGATGCTTC-TCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5038083 34 - 111193037 GGTCGGCCGGACTTTGCTG-ACTAGATGCTTC-TCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3430747 34 + 3644372 GGTCGGCCGGACTTTGCTG-ACTAGATGCTTC-TCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3385978 34 - 10304083 GGTCGGCCGGACTTTGCTG-ACTAGATGCTTC-TCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3481399 34 - 107702431 GGTCGGCCAGACTTTGCTG-ACGAGATGCTTC-TCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1018784 34 + 1565135 GGTCGGCCGGACTTTGCTG-ACTAGATGCTTC-TCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3383437 34 - 13651311 GGTCGGCCGGACTTTGCTG-ACGAGATGCTTC-TCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3472215 32 - 108792865 CGCCGGCCAGACTT--CTG-ACTAGATGCTTC-TCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3119792 32 - 7082604 GGCCGGCCAGACTT--CTG-ACGAGATGCTTC-TCG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 605338 31 + 5243153 GGCCGGCCGGAC-T--CTG-ACTAGATGCTTC-TCG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3349049 30 + 7587287 GGCCGGCCGGACTT--CTG-AC--GACGCTTC-TCG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2550467 34 + 5252280 -AGCGGCCAGGTGCAGCCA-GCTGGAGGGTTCAGCA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91425502 31 - 120129022 CATTGCCC---TTCTGTTG-GCTGAACACCAC-TCG i mm10.chr12 I 2 I 1810 s canFam3.chr17 2048931 31 + 64289059 -AGTGGCCAGAATTTCC---ATTAAATAATTA-TCC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 583516 35 + 2232271 GGTTGAGCATACTTTTCAGAATTAAATAATTA-TCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2659186 2250 - 159902609 I e proCoq1.NW_012151163v1 971060 2131 + 1238772 I a score=912622.000000 s hg38.chr2_KI270769v1_alt 67200 112 + 120616 GACATCACTGACAGACTG----AGCCCAAAGcc-tctcgctt----------cctctccttctcctttcctttc----------TGTAGTCAGCACTGCACGTGTCCACTCGTGCATTTGCAACTCACTCCTTTCTT s panTro5.chr2A 3529010 117 + 111504155 GACATCACTGACAGACTG----AGCCCAAAGcc-tctcgctt----------cctctccttctcctttcctttc-----ctttcTGTAGTCAGCACTGCACGTGTCCATTCGTGCATTTGCAACTCACTCCTTTCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3389752 122 + 114371477 GACATCACTGACAGACTG----AGCCCAAAGCC-TCTCGCtt----------cctctccttctcctttcctttcctttcctttcTGTAGTCAGCACTGCACGTGTCCATTCGTGCATTTGCAACTCACTCCTTTCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 267631 112 + 637652 GACATCACTGAGAGACTG----AGCCCAAAGCC-TCTCGCTT----------CCTCTCGTTCTCCTTTCCTTTC----------TGTAGTCAGCACTGCACGTGTCCATTCGTGCATTTGCAACTCACTCCTTTCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3063561 122 + 81552678 GACATCATTGAGAGACTG----AGCCCAAAGCC-TCTCGCTTCCTCTCGTTCCCTCTCGTTCTCCTTTCCTTTC----------TGTAGTCAGCACTGCACGCGTCCATTCGTGCATTTGCGACTCACTCCTTTCCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3326979 109 + 108979918 GACGTCATTGAGAGACTG----AGTCCAAAGCC-TCTCGCTT----------CCTCTTG---TCCTTTCCTTTT----------CGTAGTGAGCACTGCACACATCCCTTCGTGCATTTGCCACTCACCCCTCTCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5038117 109 - 111193037 GACGTCATTGAGAGACTG----AGTCCAAAGCC-TCTCGCTT----------CCTCTTG---TCCTTTCCTTTT----------CGTAGTCAGCACTGCACACATCCCTTCGTGCATTTGCCACTCACCCCTTTCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3430781 109 + 3644372 GACGTCATTGAGAGACTG----AGTCCAAAGCT-TCTCGCTT----------CCTCTTG---TCCTTTCCTTTT----------CGTAGTCAGCACTGCACACATCCCTTCGTGCAGTTGCCACTCACCCCTTTCCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3386012 112 - 10304083 GACGTCATTGAGAGACTG----AGTCCAAAGCC-TCTCGCTT----------CCTCTTGTTCTCCTTTCCTTTT----------CGTAGTCAGCACTGCACACATCCCTTCGTGCATTTGCCACTCACCCCTTTCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3481433 112 - 107702431 GACGTCATTGAGAGACTG----AGTCCAAAGCC-TCTCGCGT----------CCTCTTGTTCTCCTTTCCTTTT----------CGTAGTCAGCACTGCACACACCCCTTCGTGCATTTGCCACTCGCCCCTTTCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1018818 109 + 1565135 GACGTCATTGAGAGACTG----AGTCCAAAGCC-TCTCGCTT----------CCTCTTG---TCCTTTCCTTTT----------CGTAGTCAGCACTGCACACATCCCTTCGTGCATTTGCTACTCACCCCTTTCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3383471 112 - 13651311 GACGTCACTGAGAGACTG----AGTCCAAAGCC-TCTCGCTT----------CCTCTTGTTCTCCTTTCCTTTT----------CGTGGTCAGCACTGCACACATCCATTCGTGCATTTGCCACTCACTCCTTTCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3472247 112 - 108792865 GACGTGACTGAGGGATGT----CGCCCCAAGCC-TCTCGCTT----------CCTCTCGTTCTCCTTTCCCTTT----------TGCAGTCAGCACTGCACGCATCCATTCGTGGATTTGCCGCTCACTGCTTTCTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3119824 109 - 7082604 GACGTGACTGAGGGCTGT----CGCCCCAGGCC-TCCGGCTT----------CCTCTC---CTTCTTTCCCTTT----------TGCAGTCAGCACTGCATGCATCCGTTCGTGGATTTGCCGCTCACTCCCTTCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 605369 112 + 5243153 GACGTGACGGAGGGATGT----CGCCCCAAGCC-TCCCGCTT----------CCTCTAGCTCTCCCTTCCCTTT----------TGCAGTCAGCACTGCATGCATCCATTCGTGGATTTGCCGCTCACTCCTTTCTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3349079 111 + 7587287 GACGTGACTGAGGGATGT----CGCCCCAAGCC-TCTCGCTT----------CCTCTCTTTCTCCTTTCCC-TT----------TGCGGTCAGCACTGCGCGCATCCATTCGTGGATTTGCCGCTCACTCCTTTCTC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2550501 67 + 5252280 GACG--------------------------GTC-CCCTGCAG----------GCTTTG----TTCTTCCCTGTC--------AGGGcactcagcatt---------cactc-----------actttctcctttct- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2048962 88 + 64289059 AGCGTTGTCAGAAGATTC------------GCC-TTTC-TTC----------TGTCTCAGTCTCCTTTTCCCTT----------CTTGCTCAGTAATGCCTTGGTCCTTGCATGCATTCG---------------TT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 583551 112 + 2232271 AAAGTTACCAAAAGATTATTTAGCTCCAAAGTTATTTTTCTT----------GACTTCGTTCTCTTTT--TTCC----------CTCATTCAGTAATCCattcattcattcactcatt---cacttattcctttttt i dasNov3.JH580157 C 0 I 1856 e micMur3.chr8 2659186 2250 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e proCoq1.NW_012151163v1 971060 2131 + 1238772 I a score=1493276.000000 s hg38.chr2_KI270769v1_alt 67312 205 + 120616 GGGGAAGCCAAGCACATCACTGGGTGATGCTG-TGGGTGCAACGTGCAGCCTCAGACCCGAACCCTGCGCCC-------------GGGGAGAAGACACGCCTTCAC-CACAAAAGCACACGGCCC--GGAACCTGCCACGCTGA---GTGGTCTGAGTGGGCGC-GAGGAAGGAGCCCAGCCCAGCC---------GAAGGGGCCCAG-AGGGGCCTCTGCGTCGGGGAGAGAGGC s panTro5.chr2A 3529127 205 + 111504155 GGGGAAGCCAAGCACATCACTGGGTGATGCTG-TGGGTGCAACGTGCAGCCTCAGACCCGAACCCTGCGCCC-------------GGGGAGAAGACACGCCTTCAC-CACAAAAGCACACGGCCC--GGAACCTGCCATGCTGA---GTGGTCTGAGTGGGCGC-GAGGAAGGAGCCCAGCCCAGCC---------GAAGGGGCCCAG-AGGGGCCTCTGCGTCAGGGAGAGAGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3389874 205 + 114371477 GGGGAAGCCAAGCACATCACTGGATGATGCTG-TGGGTGCAACGTGCAGCCTCAGACCCGAACCCTGCGCCC-------------GGGGAGAAGACACGCCTTCAC-CACAAAAGCACACGGCCC--GGAACCTGCCACGCTGA---GTGGTCTGAGTGGGCGC-GAGGAAGGAGCCCAGCCCAGCC---------GAAGGGGCCCAG-AGGGGCCTCTGCGTCAGGGAGAGAGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 267743 184 + 637652 GGGGAAGCCAAGCACATCACTGGGTGATGCTG-TGGGTGCAACGTGCAGCCTCAGACCCGAACCCTGCGCCC-------------GGGGAGAAGACACGCCTTCAC-CACAAAAGCACACGGCCC--GGAACCTGCCACGCTGA---GTGGTCTGAGTGGGCGA-GAGGAAGGAGCCCAGCCCAGCC---------GAAGGGGCCC----------------------AGAGAGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3063683 184 + 81552678 GGGGAAGCCAAGCACATCACTGGGTGATGCTG-TGGGTGCGACGTGTGGCCTCAGACCCGAACCCTGCGCAC-------------GGGGAGAAGACACGCCTTCAC-CACAAAAGCACACGTCCC--GGAACCTGCCGTGCCAA---GTGGTCTGAGTGGGCAC-GAGGAAGGAGCCCAGCCCAGCC---------GAAGGGGCCC----------------------AGAGAGGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3327088 181 + 108979918 GGGGAAGCCAGGCACATCACTGGGTGACGCTG-CGGGTGCAGTGTGCAGCCTCAGACCCGAGCCCTGCACAC-------------GGGGAGAAGACTCGCCTCCAC-CACAGAAGCACACGGCCC--GGAACCTGGCACGCCGAGTGGTGGTCTGAGTGGGTGT-GAGGAAGGAGCCCAGCCCAGCT---------GAAGGGGCCCAG---------------------------- i rheMac8.chr13 C 0 I 6 s macFas5.chr13 5038226 181 - 111193037 GGGGAAGCCAGGCACATCACTGGGTGATGCTG-CGGGTGCAGCGTGCAGCCTCAGACCCGAGCCCTGCACAC-------------GGGGAGAAGACTCGCCTCCAC-CACAGAAGCACACGGCCC--GGAACCTGGCACGCCGAGTGGTGGTCTGAGTGGGTGT-GAGGAAGGAGCCCAGCCCAGCT---------GAAGGGGCCCAG---------------------------- i macFas5.chr13 C 0 I 6 s macNem1.NW_012011978v1 3430890 181 + 3644372 GGGGAAGCCAGGCACTTCACTGGGTGATGCTG-CGGGTGCAGCGTGCAGCCTCAGACCCGAGCCCTGCACAC-------------GGGGAGGAGACTCGCCTCCAC-CACAGAAGCACACGGCCC--GGAACCTGGCACGCCGAGTGGTGGTCTGAGCGGGTGT-GAGGAAGGAGCCCAGCCCAGCT---------GAAGGGGCCCAG---------------------------- i macNem1.NW_012011978v1 C 0 I 6 s cerAty1.NW_012000820v1 3386124 181 - 10304083 GGGGAAGCCAGGCACATCACTGGGTGATGCTG-TGGGTGCAGCGTGCAGCCTCAGACCCGAGCCCTGCACGC-------------GGGGAGAAAACTCGCCTTCAC-CACAGAAGCACACGGCCC--GGAACCTGGCACGCCAAGTGGTGGTCTGAGTGGGTGT-GAGGAAGGAGCCCAGCCCAACT---------GAAGGGGCCCAG---------------------------- i cerAty1.NW_012000820v1 C 0 I 6 s chlSab2.chr14 3481545 207 - 107702431 GGGGAAGCCAGGCACATCACTGGGTGATGCTG-TGG-TGCCGCGTGCAGCCTCAGACCCGAGCCCTGCACAC-------------GGGGAGAAGACTCGCCTTCAC-CACAGGAGCACACGGCCC--GGAACCTGGCGCGCCGCGTGGTGGTCTGAGTGGGTGT-GAGGAAGGAGCCCAGCCCAGCT---------GAAGGGGCCCAG-AGAGGCCTCCGCGTCAGGGACAGAGGC i chlSab2.chr14 C 0 I 44 s manLeu1.NW_012104432v1 1018927 175 + 1565135 GGGAAAGCCAGGCACATCACTGGGTGATGCTG-CGGATGCAGCGTGCAGCCTCAGACCCGAGCCCTGCACAC-------------GGGGAGAAGA--CGCCTT----CACAGAAGCACACGGCCC--GGAACCTGGCACGCCGAGTGGTGGTCTGAGTGGGTGT-GAGG-AGGAGCCCAGCCCAACT---------GAAGGGGCCCAG---------------------------- i manLeu1.NW_012104432v1 C 0 I 6 s colAng1.NW_012118821v1 3383583 181 - 13651311 GGGGAAGCCAGGCACATCACTGGGTGATGCTG-TGGGTGCACCGTGCAGCCTCAGACCCGAACCCTGCACAC-------------GGGGAGAAGACTCGCCTTCAC-CACAAAAGCACACGGCCC--GGAACCTGGCACGCCGAGTGGTGGTCTGAGTGGGTGT-GAGGAAGGAGCCCAGCCCAGCT---------GAAGGGGCCCAG---------------------------- i colAng1.NW_012118821v1 C 0 I 6 s calJac3.chr14 3472359 169 - 108792865 AGGGAAGCCAGGCG--------GGTGATGCTG-TGGATGCAATGTGCGGCTTCTGACCTGCACCCTGTGCAC------------GGGGGAGAGGACGCACCTGCAC-CACAAAAGCATGAAGCCC--GAAACCTGAAGCTCCGAGTGGTGGTCTGAGTGGGTGG-GAGGAAG--GCCCAGCCCAGCC---------CAAGGGCCC------------------------------- i calJac3.chr14 C 0 I 8 s saiBol1.JH378218 3119933 177 - 7082604 AGGGAAGCCGAGCACGTCACCCGGTGACGCTG-TGGGTGCAGTGTGCGCCTTCCGACCTGCGCCCTGTGCAC------------AGGGGAGAGGACACACCCTCAC-CACAGAAGCACACAGCCC--GGAACCTGCCGCGCCGAGTGGTGGTCTGAGCGGGCAC-GAGGGAG--GCGCAGCCCAGCT---------AAAGGGCCC------------------------------- i saiBol1.JH378218 C 0 I 8 s cebCap1.NW_016107454v1 605481 177 + 5243153 GGGGAAGCCAAGCACATCACCGGGTGATGCCG-TGGGTGCAATGTGCGGCTTCCGACCTGCACCCCGTGCAC------------GGGGGAGAGGGCGCACCCTCAC-CACAAAAGCACACAGCCC--AGAATCTGCCACGCCGAGTGGTGATCTGAGCAGGCAC-CAGGAAG--GCCCAGCCCAGCC---------AAAGGGCCC------------------------------- i cebCap1.NW_016107454v1 C 0 I 8 s aotNan1.NW_018509326v1 3349190 177 + 7587287 GGGGAAGCCAAGCACATCACCGGGTGATGCTG-TGGGTGCAGTGTGCGGCTTCCGACCTGCACCCTGTGCAC------------GGGGGAGAGGACGCACCCTCAC-CACAAAAGCACACAGCCC--GGAACCTGCCACGCTGAGTGGTGGTCTGAGTGGGCGC-GAGGAAG--GCCCAGCCCAGCC---------AAAGGGCCC------------------------------- i aotNan1.NW_018509326v1 C 0 I 8 s otoGar3.GL873658 2550568 184 + 5252280 gggtaaaccag---cccctgtggttggtgctattgagaacaatcaacagtctcagaactgag-cctgctctc--------------ggaagaagatgcaccttcatgtaatgacacaaaccgcag--gcagtattccatgccaa--aggggtctgggagggcacagaggagggagactgg-ccagtg---------gcaggaccctgggaggcgtc-------------------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2049050 188 + 64289059 GG------CAAGCACCGGACCTGGCACTGCTG--ATGCATGAAGAGCAAACGTGTATGTGGGTCCTGCCCAGGCAGCCCCATCGGGTGCAGAAGACCCGCCTGCAC-CCCGTGATCCAGAAGCCTTGGGTGGCTTCCACAGTAG---GTGG-----AAGGGTGC-TGGGACGGAGAGGAGCCGGACCTTCCTGTGGGAAGGGCGTC------------------------------ i canFam3.chr17 C 0 C 0 e micMur3.chr8 2659186 2250 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e proCoq1.NW_012151163v1 971060 2131 + 1238772 I e dasNov3.JH580157 583663 1856 + 2232271 I a score=177752.000000 s hg38.chr2_KI270769v1_alt 67517 50 + 120616 CTCTGCGT-------------CGGGGACAGAGGCCTCTGCGTCGGGGACAGAGGCTCGGGAGG s panTro5.chr2A 3529332 29 + 111504155 CTCTGCGT-------------CGGGGACAGAGGC---------------------TCCGGAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3390079 29 + 114371477 CTCTGCGT-------------CGGGGACAGAGGC---------------------TCCGGAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 267927 29 + 637652 CTCCGCGT-------------CGGGGACAGAGGC---------------------TTGAGAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3063867 29 + 81552678 CTCTGCGT-------------CGGGGACAGAGGC---------------------TCGGGAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3327275 29 + 108979918 CTCCGCGT-------------CAGGGACAGAGGC---------------------TCGGGAGG i rheMac8.chr13 I 6 C 0 s macFas5.chr13 5038413 29 - 111193037 CTCCGCGT-------------CAGGGACAGAGGC---------------------TCGGGAGG i macFas5.chr13 I 6 C 0 s macNem1.NW_012011978v1 3431077 29 + 3644372 CTCCGCGT-------------CAGGGACAGAGGC---------------------TCGGGAGG i macNem1.NW_012011978v1 I 6 C 0 s cerAty1.NW_012000820v1 3386311 29 - 10304083 CTCCGCGT-------------CAAGGACAGAGGC---------------------TCGGGAGG i cerAty1.NW_012000820v1 I 6 C 0 s manLeu1.NW_012104432v1 1019108 29 + 1565135 CTCCGCGT-------------CAGGGACAGAGGC---------------------TCGGGAGG i manLeu1.NW_012104432v1 I 6 C 0 s colAng1.NW_012118821v1 3383770 29 - 13651311 CTCCGCGT-------------CAGGGACAGAGGC---------------------TCGGGAGG i colAng1.NW_012118821v1 I 6 C 0 s calJac3.chr14 3472536 21 - 108792865 CTCCATAT-------------CGGGGAGGGAGGC----------------------------- i calJac3.chr14 I 8 C 0 s saiBol1.JH378218 3120118 21 - 7082604 CTCCGCAT-------------TGGGGATGGAGGC----------------------------- i saiBol1.JH378218 I 8 C 0 s cebCap1.NW_016107454v1 605666 29 + 5243153 CTCCGCAT-------------CGGGGATGGAGAC---------------------TCGGGAGG i cebCap1.NW_016107454v1 I 8 C 0 s aotNan1.NW_018509326v1 3349375 29 + 7587287 CTCCGCAT-------------TGGGGATGGAGGC---------------------TCGGAAGG i aotNan1.NW_018509326v1 I 8 I 22 s otoGar3.GL873658 2550752 40 + 5252280 --ctgtgtggtatgtggagactggggccaggagc---------------------tcaaggGG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2049238 13 + 64289059 --------------------CCCAGGGTGGAGG------------------------------ i canFam3.chr17 C 0 C 0 e micMur3.chr8 2659186 2250 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e proCoq1.NW_012151163v1 971060 2131 + 1238772 I e dasNov3.JH580157 583663 1856 + 2232271 I e chlSab2.chr14 3481752 44 - 107702431 I a score=1080.000000 s hg38.chr2_KI270769v1_alt 67567 1 + 120616 -G s panTro5.chr2A 3529361 1 + 111504155 -G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3390108 1 + 114371477 -G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 267956 1 + 637652 -G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3063896 1 + 81552678 -G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3327304 1 + 108979918 -G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5038442 1 - 111193037 -G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3431106 1 + 3644372 -G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3386340 1 - 10304083 -G i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 1019137 1 + 1565135 -G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3383799 1 - 13651311 -G i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 605695 1 + 5243153 -G i cebCap1.NW_016107454v1 C 0 I 21 s canFam3.chr17 2049251 1 + 64289059 C- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2659186 2250 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e saiBol1.JH378218 3120139 0 - 7082604 C e proCoq1.NW_012151163v1 971060 2131 + 1238772 I e dasNov3.JH580157 583663 1856 + 2232271 I e otoGar3.GL873658 2550792 0 + 5252280 C e aotNan1.NW_018509326v1 3349404 22 + 7587287 I e calJac3.chr14 3472557 0 - 108792865 C e chlSab2.chr14 3481752 44 - 107702431 I a score=165517.000000 s hg38.chr2_KI270769v1_alt 67568 26 + 120616 TGCTTCAGGAGGAGCTGGAGAGGAAG s panTro5.chr2A 3529362 26 + 111504155 TGCTTCAGGAGGAGCTGGAGAGGAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3390109 26 + 114371477 TGCTTCAGGAGGAGCTGGAGAGGAAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 267957 26 + 637652 TGCTTCAGGAGGAGCTGGAGAGGAAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3063897 26 + 81552678 TGCTTCAGGAGGAGCTGGAGAGGAAG i nomLeu3.chr19 C 0 I 9 s rheMac8.chr13 3327305 26 + 108979918 TGCTTCAGAAGGAGCAGGAGTGGAAG i rheMac8.chr13 C 0 I 9 s macFas5.chr13 5038443 26 - 111193037 TGCTTCAGAAGGAGCAGGAGTGGAAG i macFas5.chr13 C 0 I 9 s macNem1.NW_012011978v1 3431107 26 + 3644372 TGCTTCAGAAGGAGCAGGAGTGGAAG i macNem1.NW_012011978v1 C 0 I 9 s cerAty1.NW_012000820v1 3386341 26 - 10304083 TGCTTCAGAAGGAGCAGGAGTGGAAG i cerAty1.NW_012000820v1 C 0 I 9 s manLeu1.NW_012104432v1 1019138 26 + 1565135 TGCTTCAGAAGGAGCAGGAGTGGAAG i manLeu1.NW_012104432v1 C 0 I 9 s colAng1.NW_012118821v1 3383800 26 - 13651311 TGCTTCAGAAGGAGCAGGAGTGGAAG i colAng1.NW_012118821v1 C 0 I 9 s calJac3.chr14 3472557 22 - 108792865 ----TCTGGAGGAGCAGGAGAGGAAG i calJac3.chr14 C 0 I 8 s saiBol1.JH378218 3120139 22 - 7082604 ----TCAGGAGGAACAGGAGAGGAAA i saiBol1.JH378218 C 0 I 8 s otoGar3.GL873658 2550792 23 + 5252280 ---CCCAGAGAGATCTGGAGAGGAAA i otoGar3.GL873658 C 0 I 11 s canFam3.chr17 2049252 18 + 64289059 TACCT--------GCCAGAGACGCAG i canFam3.chr17 C 0 C 0 e micMur3.chr8 2659186 2250 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e proCoq1.NW_012151163v1 971060 2131 + 1238772 I e dasNov3.JH580157 583663 1856 + 2232271 I e cebCap1.NW_016107454v1 605696 21 + 5243153 I e aotNan1.NW_018509326v1 3349404 22 + 7587287 I e chlSab2.chr14 3481752 44 - 107702431 I a score=432211.000000 s hg38.chr2_KI270769v1_alt 67594 45 + 120616 GCCCAGAGCCT-GGGG-CAGGCTGAGGGACCTGGGCAG-TTCCCTGGA s panTro5.chr2A 3529388 45 + 111504155 GCCCAGAGCCT-GGGG-CAGGCTGAGGGACCTGGGCAG-TTCCCTGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3390135 45 + 114371477 GCCCAGAGCCT-GGGG-CAGGCTGAGGGACCTGGGCAG-TTCCCTGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 267983 45 + 637652 GCCCAGAGCCT-GGGG-CAGGCTGAGGGACCTGGGCAG-TTCCCTGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3063932 46 + 81552678 GCCCAGAGCCCGGGGG-CAGGCTGAGGGGCCTGGGCAG-TTCCCTAGA i nomLeu3.chr19 I 9 C 0 s rheMac8.chr13 3327340 46 + 108979918 GCCCGGAGCCTGGGGG-CAGGCTGAGGGGGCTGGACAG-TTCCCTGAG i rheMac8.chr13 I 9 C 0 s macFas5.chr13 5038478 46 - 111193037 GCCCGGAGCCTGGGGG-CAGGCTGAGGGGGCTGGGCAG-TTCCCTGAG i macFas5.chr13 I 9 C 0 s macNem1.NW_012011978v1 3431142 46 + 3644372 GCCCGGAGCCTGGGGG-CAGGCTGAGGGGGCTGGGCAG-TTCCCTGAG i macNem1.NW_012011978v1 I 9 C 0 s cerAty1.NW_012000820v1 3386376 46 - 10304083 GCCCAGAGCCTGGGGG-CAGGCTGAGGGGGCTGGGCGG-TTCCCTGGA i cerAty1.NW_012000820v1 I 9 I 122 s chlSab2.chr14 3481796 46 - 107702431 GCCCAGAGCCTGGGGG-CAGGCTGAGGGGGCTGGGCGG-TTCCCTGAG i chlSab2.chr14 I 44 C 0 s manLeu1.NW_012104432v1 1019173 46 + 1565135 GCCCAGAGCCTGGGGG-CAGGCTGAGGGGGCTGGGCGG-TTCCCTGAG i manLeu1.NW_012104432v1 I 9 C 0 s colAng1.NW_012118821v1 3383835 47 - 13651311 GCCCAGAGCCTGGGGA-CAGGCTGAGGGGGCTGGGCGGTTTCCCTGAA i colAng1.NW_012118821v1 I 9 C 0 s calJac3.chr14 3472587 46 - 108792865 GGCCAGAGCCTGGGGG-CAGGCCCAGAGAGCTGGGCAG-TTTCCTGGA i calJac3.chr14 I 8 C 0 s saiBol1.JH378218 3120169 46 - 7082604 GGCCAGAGCCTGGGGG-CAGGCTGAGAGGGCTGGGCAG-TTCCCTGGA i saiBol1.JH378218 I 8 C 0 s cebCap1.NW_016107454v1 605717 45 + 5243153 GCCCAGAGCCT-GGGG-CAGGCTGAGAGGGCTGGGCAG-TTCCCTGGA i cebCap1.NW_016107454v1 I 21 C 0 s aotNan1.NW_018509326v1 3349426 46 + 7587287 GGCCAGAGCCTGGGGG-CAGGCTGAGAGGGCTGGGCAG-TTCCCTGGA i aotNan1.NW_018509326v1 I 22 C 0 s otoGar3.GL873658 2550826 40 + 5252280 GAGCAGAGCCTGGGAGCCAGGGCAAGGATGCTGGGCTC-TT------- i otoGar3.GL873658 I 11 C 0 s canFam3.chr17 2049270 33 + 64289059 -CCCAGG-----AGGC-CAGGCTGA------TGAACTC-ACCCTTGA- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2659186 2250 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e proCoq1.NW_012151163v1 971060 2131 + 1238772 I e dasNov3.JH580157 583663 1856 + 2232271 I a score=199399.000000 s hg38.chr2_KI270769v1_alt 67639 32 + 120616 GCATTGGAAACCCC---------TTGGGGGACTGGGTGGGT s panTro5.chr2A 3529433 32 + 111504155 GCATTGGAAACCCC---------TTGGGGGACTGGGTGGGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3390180 32 + 114371477 GCATTGGAAACCCC---------TTGGGGGACTGGGTGGGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 268028 31 + 637652 GCATTGGAAACCCC---------TT-GGGGACTGGGTGGGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3063978 32 + 81552678 GCATTGGAAACCCC---------TTGGGGGACTGGGTGGGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3327386 32 + 108979918 GCATTGGAAAACCC---------CTGGGGTACCGGGTGGGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5038524 32 - 111193037 GCATTGGAAAACCC---------CTGGGGTACTGGGTGGGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3431188 32 + 3644372 GCATTGGAAAACCC---------CTGGGGTACTGGGTGGGT i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3481842 31 - 107702431 GCATTGG-AAACCC---------CTGGGGTACTGGGTGGGT i chlSab2.chr14 C 0 I 467 s manLeu1.NW_012104432v1 1019219 32 + 1565135 GCATTGGAAAACCC---------CTGGGGTACTGGGTGGGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3383882 32 - 13651311 GCAGTGGAAAGCCC---------CTGGGGTACTGGGTGGGT i colAng1.NW_012118821v1 C 0 I 30 s calJac3.chr14 3472633 32 - 108792865 TCAGTGGAAACCGT---------CTGGGGGACTGGGTGGGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3120215 32 - 7082604 CCAGTGGCAACCGT---------CTGGGGGATTGGGTGGGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 605762 32 + 5243153 CCAGTGGCAACCGC---------CTGGGGGACTGGGTGGGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3349472 41 + 7587287 TCAGTGGAAACCGCCTGGGGGGACTGGGGGACTGGGTGGGT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2550866 19 + 5252280 ----------TTGC---------TTAGGGTCAAGGGAT--- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2049303 14 + 64289059 -------------C---------CCCAAGCACGGGC----- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2659186 2250 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e proCoq1.NW_012151163v1 971060 2131 + 1238772 I e dasNov3.JH580157 583663 1856 + 2232271 I e cerAty1.NW_012000820v1 3386422 122 - 10304083 I a score=81989.000000 s hg38.chr2_KI270769v1_alt 67671 8 + 120616 TGACATGA s panTro5.chr2A 3529465 8 + 111504155 TGACATGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3390212 8 + 114371477 TGACATGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 268059 8 + 637652 TGACATGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3064010 8 + 81552678 TGACATGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3327418 8 + 108979918 TGACATGA i rheMac8.chr13 C 0 I 90 s macFas5.chr13 5038556 8 - 111193037 TGACATGA i macFas5.chr13 C 0 I 90 s macNem1.NW_012011978v1 3431220 8 + 3644372 TGACATGA i macNem1.NW_012011978v1 C 0 I 90 s chlSab2.chr14 3482340 8 - 107702431 TGACACGG i chlSab2.chr14 I 467 C 0 s manLeu1.NW_012104432v1 1019251 8 + 1565135 TGGCATGA i manLeu1.NW_012104432v1 C 0 I 177 s colAng1.NW_012118821v1 3383944 8 - 13651311 TGACATGA i colAng1.NW_012118821v1 I 30 C 0 s calJac3.chr14 3472665 8 - 108792865 TGACATGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3120247 8 - 7082604 TGACATGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 605794 8 + 5243153 TGACATGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3349513 8 + 7587287 TGACATGA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2550885 8 + 5252280 TGACAGGA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2049317 8 + 64289059 TGCTGGGA i canFam3.chr17 C 0 C 0 e micMur3.chr8 2659186 2250 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e proCoq1.NW_012151163v1 971060 2131 + 1238772 I e dasNov3.JH580157 583663 1856 + 2232271 I e cerAty1.NW_012000820v1 3386422 122 - 10304083 I a score=383882.000000 s hg38.chr2_KI270769v1_alt 67679 50 + 120616 GCTGATCTGCACAGTG---AGGCCATGCCAGCTGCAGCTCGGGGAGTGCGTTA s panTro5.chr2A 3529473 50 + 111504155 GCTGATCTGCACAGTG---AGGCCATGCCAGCTGCAGCTCGGGGAGTGCGTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3390220 50 + 114371477 GCTGATCTGCACAGTG---AGGCCATGCCAGCTGCAGCTCGGGGAGTGCGTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 268067 50 + 637652 GCTGATCTGCACAGTG---AGGCCATGCCAGCTGCAGCTCGGGGAGTGCGTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3064018 50 + 81552678 GCCGATCTGCACAGTG---AGGCCATGCCAGTTGCAGCTCGGGGAGTGCGTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3327516 50 + 108979918 GCTGATCCGCACAGTG---AGGCCGTGCCAGCTGCGTCTCGGGGAGTGCCTTA i rheMac8.chr13 I 90 C 0 s macFas5.chr13 5038654 50 - 111193037 GCCGATCCGCGCAGTG---AGGCCGTGCCAGCTGCGTCTCGGGGAGTGCCTTA i macFas5.chr13 I 90 C 0 s macNem1.NW_012011978v1 3431318 50 + 3644372 GCCGATCCGCGCAGTG---AGGCCGTGACAGCTGCGTCTCGGGGAGTGCCTTA i macNem1.NW_012011978v1 I 90 C 0 s cerAty1.NW_012000820v1 3386544 50 - 10304083 GCCGATCCGCACAGTG---AGGCCGTGCCAGCTGCGTCTCGGGGAGTGCGTTA i cerAty1.NW_012000820v1 I 122 C 0 s chlSab2.chr14 3482348 50 - 107702431 GCCGATCCGCACAGTG---AGGCCGTGCCAGCTGCGTCTCGGGGAGTGCGTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1019436 50 + 1565135 GCCGATCCGCACAGTG---AGGCCATGCCAGCTGCGTCTCGGGGAGTGCGTTA i manLeu1.NW_012104432v1 I 177 C 0 s colAng1.NW_012118821v1 3383952 50 - 13651311 GCCGATCCGCACAGTG---AGGCCGTGCCAGCTGCGTCTTGGGGAGTGCGTTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3472673 39 - 108792865 GCTGATCTCTACAGTG---AGGCCATGCCAGCTGCAGCTCAG----------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3120255 39 - 7082604 GCTGACCTCCACAGTG---AGGCCATGCCAGCTGCAGCTCAG----------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 605802 38 + 5243153 GCTGACCTCTACAGTG---TGGCCAT-CCAGCTGCAGCTCAG----------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3349521 39 + 7587287 GCTGATCTCTACAGCG---AGGCCATGCCGGCTGCAGCTCAG----------- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2550893 48 + 5252280 GTAGCTCTGCAC--TA---TGGCAAGACTGGTTGAACTGCAGCAAGTGTGGTA i otoGar3.GL873658 C 0 I 2491 s canFam3.chr17 2049325 51 + 64289059 GCCGA-CTGCACGTTGAGAAGACCTTCCTGGCAGCGATGTTTTGAGAACATT- i canFam3.chr17 C 0 C 0 e micMur3.chr8 2659186 2250 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e proCoq1.NW_012151163v1 971060 2131 + 1238772 I e dasNov3.JH580157 583663 1856 + 2232271 I a score=2378094.000000 s hg38.chr2_KI270769v1_alt 67729 320 + 120616 GCCAGGAGCAAGCTTCCGATCATGCTTGGAAACCTGGCCTGAGTGCTCCCTCCCAGGTAG---CCCCACCCTAGCCTCACTCCCTCACTCCTTGTGGCAGCATCTCCCCACAGGCCTGGTG-----------------GCCTGGTCATCTCCTCCT------------------------TCCCACAGCTTCTGTCCTACTCGATGTGCAGCC-------CAAG-----------TCAAGATCGGGTGGTCTCC---GTTTCCGC----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCTGGTGTGAGCTGAACgtgtgtga------------ggtg-----tgta-----tg----------------tgtgtggtgtgtggat-gttggg--tgtgcatgct---gt-ggcatgt---------------------------ggtgtgggtgtggt s panTro5.chr2A 3529523 320 + 111504155 GCCAGGAGCAAGCTTCCGATCATGCTTGGAAACCTGGCCTGAGTGCTCCCTCCCAGGTAG---CCCCACCCTAGCCTCACTCCCTCACTCCTTGTGGCAGCATCTCCCCACAGGCCTGGTG-----------------GCCTGGTCATCTCCTCCT------------------------TCCCACAGCTTCTGTCCTACTCGATGTGCAGCC-------CAAG-----------TCAAGATCGGGTGGTCTCC---GTTTCCGC----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCTGGTGTGAGCTGAACgtgtgtga------------ggtg-----tgta-----tg----------------tgtgtggtgtgtggat-gttggg--tgtgcatgct---gt-ggcatgt---------------------------ggtgtgggtgtggt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3390270 320 + 114371477 GCCAGGAGCAAGCTTCCGATCATGCTTGGAAACCTGGCCTGAGTGCTCCCTCCCAGGTAG---CCCCACCCTAGCCTCACTCCCTCACTCCTTGTGGCAGCATCTCCCCACAGGCCTGGTG-----------------GCCTGGTCATCTCCTCCT------------------------TCCCACAGCTTCTGTCCTACTCGATGTGCAGCC-------CAAG-----------TCAAGATCGGGTGGTCTCC---GTTTCCGC----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCTGGTGTGAGCTGAACgtgtgtga------------ggtg-----tgta-----tg----------------tgtgtggtgtgtggat-gttggg--tgtgcatgct---gt-ggcatgt---------------------------ggtgtgggtgtggt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 268117 318 + 637652 GCCAGGAGCAAGCTTCCGATCATGCTTGGAAACCCGGCCTGAGTGCTCCCTCCCAGGTAG---CCCCACCCTAGCCTCACTCCCTCACTCCTTGTGGCAGCATCTCCCCACAGGCCTGGTG-----------------GCCTGGTCATCTCCTCCT------------------------TCCCACAGCTTCTGTCCTACTCGATGTGCAGCC-------CAAG-----------TCAAGACCAGGTGGTCTCC---ATTTCCGC----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCTGgtgtgagctgaa----tgtga------------ggtg-----tgtatg---tg----------------tgtgtggtgtgtggat-gttggg--tgtgcatgct---gt-ggcatgt---------------------------ggtgtgggtgtggt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3064068 318 + 81552678 GCCAGGAGCAAGCTTCTGATCACGCTTGGAAACCCGGCCTGAGTGCTCCCTCCCAGGCAG---CCCCACCCTAGC----CTCCCTCACTCCTTGTGGCAGCATCTCCCCACAGGCCTGGTT-----------------GCCTGGTCATCTCCTCCT------------------------TCCCATAGCTTCTGTCCTGCTGGATGTGCGGCC-------CAAG-----------TCAAGACCGGGTGGTCTCC---ATTTCCGC----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCTGGTGTGAGCTGAACgtgtgtga------------ggtg-----tgtata---tg----------------tgtgtggtgtgtggat-gttgag--tttgtatgtt---gt-ggcgtgt---------------------------ggtgtgggtgtggt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3327566 315 + 108979918 GCCAGGAGCGAGCTTCCGATCACGGTTGGAAACCCGGCCTGAGTGCTCCCTCCCGGGCAG---CCCCG-CCGAGCCTCACTCCCTCACTGCTTGTGGCAGCGTCTCCCCACAGGCCTGGTT-----------------GCCTGGTCATCTCCTCCT------------------------TCCCATAGCTTCTGTCCTACTCGGTGTGCAGCC-------CAAG-----------TCGGGACCGGGTGGTCTGC---GTTTCTGC----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCTGGTGTGAGCTGAACAtgtgtga------------ggtg-----tgta-------------------------tgtggtgggtgtac-gttgaa--tgtgcatgtt---gt-ggcatgt---------------------------ggtgtgggtgtggt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5038704 315 - 111193037 GCCAGGAGCGAGCTTCCGATCACGGTTGGAAACCCGGCCTGAGTGCTCCCTCCCGGGCAG---CCCCG-CCGAGCCTCACTCCCTCACTGCTTGTGGCAGCGTCTCCCCACAGGCCTGGTT-----------------GCCTGGTCATCTCCTCCT------------------------TCCCATAGCTTCTGTCCTACTCAGTGTGCAGCC-------CAAG-----------TCGGGACCGGGTGGTCTGC---GTTTCTGC----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCTGGTGTGAGCTGAACAtgtgtga------------ggtg-----tgta-------------------------tgtggtgggtgtac-gttgaa--tgtgcatgtt---gt-ggcatgt---------------------------ggtgtgggtgtggt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3431368 315 + 3644372 GCCAGGAGCGAGCTTCCGATCACGGTTGGAAACCCGGCCTGAGTGCTCCCTCCCGGGCAG---CCCCG-CCGAGCCTCACTCCCTCACTGCTTGTGGCAGCGTCTCCCCACAGGCCTGGTT-----------------GCCTGGTCATCTCCTCTT------------------------TCCCATAGCTTCTGTCCTACTCGGTGTGCAGCC-------CAAG-----------TCGGGACCGGGTGGTCTGC---GTTTCTGC----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCTGGTGTGAGCTGAACAtgtgtga------------ggtg-----tgta-------------------------tgtggtgggtgtac-gttgaa--tgtgcatgtt---gt-ggcatgt---------------------------ggtgtgggtgtggt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3386594 303 - 10304083 GCCAGGAGCGAGCTTCCGATCACGGTTGGAAACCCGGCCTGAGTGCTCCCTCCCGGGCAG---CCCCG-CCGAGCCTCACTCCCTCACTGCTTGTGGCAGCGTCTCCCCACAGGCCTGGTT-----------------GCCTGGTCATCTCCTCCT------------------------TCCCATAGCTTCTGTCCTACTCGGTGTGCAGCC-------CAAG-----------TCGGGACTGGGTGGTCTGC---GTTTCTGC----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCTGGTGTGAGCTGAACAtgtgtga------------ggtg-----tgta-------------------------tgtggtgggtgtac-gttgaa--tgtgcatgt-------------------------------------------tgtgggtgtggt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3482398 315 - 107702431 GCCAGGAGCGAGCTTCCGATCACGCTTGGAAACCCGGCCTGAGTGCTCCCTCCCGGGCAG---CCCCA-CCGAGCCTCACTCCCTCACTGCTTGTGGCAGCGTCTCCCCACAGGCCTGATT-----------------GCCTGGTCATCTCCTCCT------------------------TCCCATAGCTTCTGTCCTACTCGGTGTGCAGCC-------CAAG-----------TCGGGACCGGGTGGTCTGC---GTTTCTGC----------------------AGGGGTGCTGGAGTT-----TCTGGGGA-------GCTGCTG------------GCTGGTGTGAGCTGAACAtgtgtga------------ggtg-----tgta-------------------------tgtggtgggtgtac-gttgaa--tgtgcatgtt---gt-ggcatgt---------------------------ggtgtgggtgtggt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1019486 315 + 1565135 GCCAGGAGCGAGCTTCCGATCACGGTTGGAAACCCGGCCTGAGTGCTCCCTCCCGGGCAG---CCCCG-CCGAGCCTCACTCCCTCACTGCTTGTGGCAGCGTCTCCCGACAGGCCTGGTT-----------------GCCTGGTCGTCTCCTCCT------------------------TCCCATAGCTTCTGTCCTACTCGGTGTGCAGCC-------CAAG-----------TCGGGACCGGGTGGTCTGC---GTTTCTGC----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCTGGTGTGAGCTGAACAtgtgtga------------ggtg-----tgta-------------------------tgtggtgggtgtac-gttgaa--tgtgcatgtt---gt-ggcatgt---------------------------ggtgtgggtgtggt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3384002 315 - 13651311 GCCAGGAGCGAGCTTCCGATCATGCTTGGAAACCCCGCCTGAGTGCTCCCTCCCGGGCAG---CCCCG-CCGAGCCTCACTCCCTCACTGCTTGTGGCAGCGTCTCCCCACAGGCCTGGTT-----------------GCCTGGTCATCTCCTCCT------------------------TCCCATAGCTTCTGTCCTACTCGGTGTGCAGCC-------CAAG-----------TTGAGACCAGGTGGTCTCT---GTTTCTGC----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCTGGTGTGAGCTGAACAtgtgtga------------gggg-----tgtg-------------------------tgtggtgggtggac-gttgaa--tgtgcatgtt---gt-ggcatgt---------------------------ggtgtgggtgtggt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3472712 280 - 108792865 ----GGAATGAGCTTC-GATCCTGCCTGGAAACCTGGCCTGATCGCT-CCTCCCGGTCAG---CGCCACCCTATCCTCACTGCCTCACCACTGGTGGCAGCGTCCCCTCACAGTCCTGGTT-----------------GCCTGGTCATCTCTTCCT------------------------CCCCATGGCCTCTGTCCTACTCAGTGTGCAAGT-------CAAG-----------TCCAGACCAGGCTGCCTCT---GGCTCCGG----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCCGGTGTGCACtgtacgtgtatg---------------------------------------------------tgtggtgtggggat---------------------------ggtgt----------------------------atgtgtgtgtggt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3120294 258 - 7082604 ----GGAACAAGCTTC-GATCACACCTGGAAACCCAGCCTGATGGCT-CCTCCCGGTCAG---CCCCACCCTGTGCTCACTGCCTCACCCCTGGTGGCAGCGTCCCCCCACGGTCCTTGTT-----------------GGCTGGTCATCTCCTCCT------------------------CCCCATAGCTTCTGTCCTACTCCATGTGCAAGC-------CAGG-----------TCGAGACCAGGTGGCCTCT---GGCTCCGC----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCTGGTGTGAACTGTACGTGTATG---------------------------------------------------TGTGGTGTGG----------------------------------------------------------------------------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 605840 277 + 5243153 ----GGAACGAGCTTC-AATCACGCCTGGAAACCCGGCCTCATGGCT-CCTCCCGGTCAG---CCCCACCCTATCCCCACTGCCTCACCCCTGGTGGCAGCGTCCCCCCACGGTCCTGCTT-----------------GCCTGGTCATCTCCTCCT------------------------CCCCATAGCTTCTGTCCTACTCCGTGTGCAAGC-------CAAG-----------TCAAGACCAGGTGGCCTCT---GGCTCCGC----------------------AGGTGTGCTGGGGTT-----TCTGGGGA-------ACTGCTG------------GCTGGTATGAACCTTACCTGTATg---------------------------------------------------tgtggtgtgg-------------------------------cgtgt---------------------------ggtgtgggtgtggt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3349560 276 + 7587287 ----GGAACGAGCTTC-GATCACGCCTGGAGACCCGGCCTGATCACT-CCTCCCGGTCAG---CCCCACCCTATCCTCACTGCCTCACCCCTGGTGGCAGCGTCTCCCGACGGTCCTGGTT-----------------GCCTGGTCATCTCCTCCT------------------------CCCCATAGCTTCTGTCCTACTCAGTGTGCGAGC-------TGAG-----------TCGAGACCAGGCGGCCTCT---GGCTCCAC----------------------AGGTGTGCTGGGCTT-----TCTGGGGA-------ACTGCTG------------GCTGGTGTGAACTGTACgtgtgtg---------------------------------------------------tgtggtgtgt--------------------------------ggat---------------------------ggtgtgggtgtggt i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2553432 377 + 5252280 GGCAAGAGTGAACTGCTAGTCATGTTT-----CCT---CAGAGTGGTCCCACCC---------------CTTATCCTTGCTCCTATGTTTCT-GAGGCAGCACCACCC--CTAGCCTAGCT-----------------GCCTGG--ACCTCTCCCC------------------------TGCTATCATGTCTGTCCTGCTCCGCCTGAACTCCTGAGTGCAAGGTCATGGCTGCTCAGGAGCTACTGGCCAGTGGGGGCTGCAC----------------------TGGCGAGCTGGGGTTCCCTCTCCAGCCA-------GCTCTGA------------GGGGACTTGAGCCAAAAGCTGGAGA------------GGAGATAATTGCAGA--TTGACACCAAGCCAAGAGCCAGGCCATGAGTGGGC-CTTGGGCCCATTTATGCTTAAAT-GGTGTGTCCTTTACGTAACCCCACATACCCAACAGGTTTGGGTGTGTG i otoGar3.GL873658 I 2491 C 0 s canFam3.chr17 2049376 415 + 64289059 ---AGGGATGaacttctaattatgcttcaaagcccaactcaaatggcgcctccctgagaggcccctca-cctgccgctccttccccaaggcccgtcgtctcctttccccaccagtcccactctgtctcacctccaggagcctggcggtttccacctctgtgtgcctgactcggagcgtgctctccTGACCTCTGGCCAGC---GTGGGTTATT-------CTAG-----------CAAGTATTGGGCTTCCTCT---GAAGCTGCTCCGAGTAGACCAATGGGCCTGAGGCAGGCGAGGTGG-----CCTGGGGAAGGGAACACTGCAGGTAGAGAGCCATGCTGGTGCCCCCAGGACCATGGTGACCCTGGACGGCCCATG-----AGCATGGGCTT------------------TGCGGGGGGAGGGCAGTAGAG--AGAGAACAGC---GTGGGCAGGA---------------------------GATGTTTGGCTTGG i canFam3.chr17 C 0 C 0 e micMur3.chr8 2659186 2250 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e proCoq1.NW_012151163v1 971060 2131 + 1238772 I e dasNov3.JH580157 583663 1856 + 2232271 I a score=1974283.000000 s hg38.chr2_KI270769v1_alt 68049 195 + 120616 gtgt-----gcatgtg-----tgtgCACT---TGTGCA-------------CTCTCTTTTCAGTAATTT--AATTGCAGGTAGAGTAACAAG---GTCTG-AAGGAGAGACG------GCACTGTCTGCTCATG----GATGTCCCA-------TTCAGCATTCTTGGCAACC--AGTCATTTTACCCCTGGTTGGGCTC---------CTGCTTTGGTGG------------------------GAATGAGCATGTAGTTATCAGAGAGCAGAAGGCT s panTro5.chr2A 3529843 195 + 111504155 gtgt-----gcatgtg-----tgtgCACT---TGTGCA-------------CTCTCTTTTCAGTAATTT--AGTTGCAGGTAGAGTAACAAG---GTCTG-AAGGAGAGACG------GCACTGTCTGCTCATG----GATGTCCCA-------TTCAGCATTCTTGGCAGCC--AGTCATTTTACCCCTGGTTGGGCTC---------CTGCTTTGGTGG------------------------GAATGAGCATGTAGTTATCAGAGAGCAGAAGGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3390590 195 + 114371477 gtgt-----gcatgtg-----tgtgCACT---TGTGCA-------------CTCTCTTTTCAGTAATTT--AGTTGCAGGTAGAGTAACAAG---GTCTG-AAGGAGAGACG------GCACTGTCTGCTCATG----GATGTCCCA-------TTCAGCATTCTTGGCAGCC--AGTCATTTTACCCCTGGTTGGGCTC---------CTGCTTTGGTGG------------------------GAATGAGCATGTAGTTATCAGAGAGCAGAAGGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 268435 194 + 637652 gtgt-----gcatgtg-----tgtgCACT---TGTGCA-------------CTCTCTTTTCAGTAATTT--AATTGCAGGTAGAGTAACAAG---GTCTG-AAGGAGAGACG------GCACCGTCTGCTCATG----GATGTCCCA-------TTCAGCATTCTTGGCAACC--AGTCATTTTACCCCTGGTTGGGCTC---------CTGCTTTGGTGG------------------------GAATGAGCATGTAGTTATC-GAGAGCAGAAGGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3064386 195 + 81552678 gtgt-----gcatgtg-----tgtgCACT---TGTGCA-------------CTCTGTTTTCAGTAATTT--AATTGCAAGTAGAGTAACAAG---GTCTG-AAGGAGAGACG------TCAGCGTCTGCTCATG----GATGTCCCG-------TTCAGCATTCTTGGCAACC--AGTCATTTTACCCCTGGTTGGGCTC---------CTGCTTTGGTGG------------------------GAATGAGCATGTAGGTATCGGAGAGCAGAAGGCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3327881 195 + 108979918 gtgt-----gcttgtg-----tgtgCACT---TGTGCG-------------CTCTCTTTTCAGTAATTT--AATTGAAAGCAGAGTAACAAG---GTCTG-AAGGAGAGATG------TCGCCATCTGCTCCTG----GATGTCCCA-------TCCAGCACTCTTGGCACCC--AGTCATGTTACCCCTTGTTGGGCTC---------CCGCTTTGGTGG------------------------GAATGAGCATGTAGTTATCAGAGAGCAGAAGGCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5039019 195 - 111193037 gtgt-----gcttgtg-----tgtgCACT---TGTGCG-------------CTCTCTTTTCAGTAATTT--AATTGAAAGCAGAGTAACAAG---GTCTG-AAGGAGAGATG------TCGCCATCTGCTCCTG----GATGTCCCA-------TCCAGCACTCTTGGCACCC--AGTCATGTTACCCCTTGTTGGGCTC---------CCGCTTTGGTGG------------------------GAATGAGCATGTAGTTATCAGAGAGCAGAAGGCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3431683 195 + 3644372 gtgt-----gcttgtg-----tgtgCACT---TGTGCG-------------CTCTCTTTTCAGTAATTT--AATTGAAAGCAGAGTAACAAG---GTCTG-AAGGAGAGATG------TCACCATCTGCTCCTG----GATGTCCCA-------TCCAGCATTCTTGGCACCC--AGTCATGTTACCCCTTGTTGGGCTC---------CCGCTTTGGTGG------------------------GAATGAGCATGTAGTTATCAGAGAGCAGAAGGCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3386897 195 - 10304083 gtgt-----gcttgtg-----tgtgCACT---TGTGCG-------------CTCTCTTTTCAGTAATTT--AATTGAAAGCAGAGTAACAAG---GTCTG-AAGGAGAGACG------TCGCCATCTGCTCCTG----GATGTCCCA-------TCCAGCATTCTTGGCACCC--AGTCATGTTACCCCTTGTTGGGCTC---------CCGCTTTGGTGG------------------------GAATGAGCATGTAGTTATCAGAGAGCAGGAGGCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3482713 195 - 107702431 gtgt-----gcttgtg-----tgtgCACT---TGTGCG-------------CTCTCTTTTCAGTAATTT--AATTGAAAGTAGAGTAACAAG---GTCTG-AAGGAGAGACA------TCACCATCTGCTCCTG----GATGTCCCA-------TCCAGCATTCTTGGCACCC--AGTCATGTTACCCCTTGTTGGGCTC---------CCGCTTTGGTGG------------------------GCATGAGCATGTAGTTATCAGAGAGCAGAAGGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1019801 195 + 1565135 gtgt-----gcttgtg-----tgtgCACT---TGTGCA-------------CTCTCTTTTCAGTAATTT--AATTGAAAGCAGAGTAACAAG---GTCTG-AAGGAGAGACG------TCGCCATCTGCTCCTG----GATGTCCCA-------TCCAGCATTCTTGGCACCC--AGTCATGTTACCCCTTGTTGGGCTC---------CCGCTTTGGTGG------------------------GAATGAGCATGTAGTTATCAGAGAGCAGAAGGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3384317 195 - 13651311 gtgt-----gcttgtg-----tgtgCACT---TGTGCG-------------CTCTCTTTTCAGTAATTT--AATTGAAAGTAGAGTAACAAG---GTCTG-AAGGAGAGACG------TCGCCATCTGCTCCTG----GATGTCCCA-------TCCAGCATTCTTGGCACCC--AGTCATGTTACCCCTTGTTGGGCTC---------CCGCTTTGGTGG------------------------GAATGAGCTTGTAGTTATCAGAGAGCAGAAGGCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3472992 201 - 108792865 gtgg-----gcctgtg-----tgtgcact---tgtgCA-------------CTCTCTTTTTAGTCATTT--AATTGCATGCAGAGTAACAAG---GTCTG-AAGGAGAGACGTCACCATCGCCATCTGCTCGCA----GCTGTCCCG-------TTCAGCATTCTTGGCACCC--GGCCGTTTTACCCCTTCCTGGGCTC---------TGGCTTTGGTGG------------------------GAATGAGCATGTAGTTACTAGAGGTCAGAAGGCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3120552 185 - 7082604 ------------------------GCACT---TGTGCG---------------CTCTTTTTAGTCATTT--AATTGCATGCAGAGTAACAAG---GTCTG-AAGGAGAGACGTCACCATCACCATCTGCTCTTG----GCTGTCCCA-------TTCAGCATTCTTGGCACCC--AGCCGTTTTACCCCTTCCTGGGCTC---------CGGCTTTGGTGG------------------------GAATGAGCATGTAGTTACTAGAGGTCAGAAGGCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 606117 201 + 5243153 gtgg-----gcctgtg-----tgtgCACT---TGTGCA-------------CTCTCTTTTTAGTCATTT--AATTGCATGCAGAGTAGCAAG---GTCCG-AAGGAGAGACGTCACCATCACCATCTGCTCATG----GCTGTCCCA-------TTCAGCATTCTTGGCACCC--AGCCGTTTTACCCCTTCCTGGGCTC---------CGGCTTTGGTGG------------------------GAATGAGCATGTAGTTATGAGAGGTCAGAAGGCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3349836 201 + 7587287 gtgg-----gcctgtg-----tgtgCACT---TGTGCA-------------CTCTCTTTTTAGTCATTT--AATTGCATGCAGAGTAACAAG---GTCTG-AAGGAGGGACGTCGCCATCACCATCTGTTCGTG----GCTGTCCCA-------TTCAGCATTCTTGGCACCC--AGCCGTTTTACCGCTTCCTGGGCTC---------CGGCTTTGGTGG------------------------GAATGAACATGTAGTTATGAGAGGTCAGAAGGCT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2553809 201 + 5252280 AGAT-----GTGGGTGGCAGATGTGCAATGTGTGTGCA-------------CTGTCTCTCTTG-GATTT--AATTGAAAATAAATTAACAAGCCAGTCTG-AAGGAGAGGAG------TCACCCTGTGCACATG----GACACCCTGG----TCTCCAGCATTTTGGCCCCAC--AGCCACTCCATCCCCACAGG----------------GCTTTAGTGG------------------------GCACAAGCACACGGCTATTGCAGATCAAAAAGCA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2049791 247 + 64289059 GAGCCAACAGCACTGG-----GCTGCACG---TATGCAGCAAGCACAGCGACCTTTGTTTGAGAAATCCCAACCTACAGCCAGAGTTGTAGG---GAGTGTGCGCATGTGTG------TGCACATCTGTGCATGCACACACATCCCT-------CTCGGCATTGTAGCTG--------CAGGTGAGTCTGAGCTGGCCTCACCCTCCGACCTCCCTGGTGTTGTCTGCACGTGGTCACTATTCCCGCAGAAGCAGGTAGGGACTGGATCTCAGGAGGCA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 585519 206 + 2232271 GTTT-----ATATGTG-----TGTGTACT---CATGCA-----------CACTTTCTTTTCAGTAATTT--AACTGCAAATAAATTAACAAG---ATCTG-AAGGAGAGAAG------TCATCATCCTCTCTTG----GGCATCCCAGACATTCTCTGGCATTTCTCTCCACCTGAATCATCTTATTCCCATTGGGGCTC---------CTGTTTTAGTGG------------------------AAATGAGCGGAGACGTGTTAGATATCAGAAGGCA i dasNov3.JH580157 I 1856 C 0 e micMur3.chr8 2659186 2250 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e proCoq1.NW_012151163v1 971060 2131 + 1238772 I a score=470438.000000 s hg38.chr2_KI270769v1_alt 68244 51 + 120616 GTTCCTGGAAATCTAACAGAAGGTCACA-CCCATGAG--C--ATTTATAAGGAGGG s panTro5.chr2A 3530038 51 + 111504155 GTTCCTGGAAATCTAACAGAAGGTCACA-CCCATGAG--C--ATTTATAAGGAGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3390785 51 + 114371477 GTTCCTGGAAATCTAACAGAAGGTCACA-CCCATGAG--C--ATTTATAAGGAGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 268629 51 + 637652 GTTCCTGGAAATCTAACAGAAGGTCACA-CCCATGAG--C--ATTTATAAGGAGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3064581 48 + 81552678 GTTCCTGGAAATCTAAC---AGGTCACA-CCCGTGAG--C--ATTTATAAGGAGGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3328076 50 + 108979918 GTTCCTGGAAATCTAACAAAAGGTTACA--CCATGAG--C--ATTTCTAAGGAGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5039214 50 - 111193037 GTTCCTGGAAATCTAACAAAAGGTTACA--CCATGAG--C--ATTTCTAAGGAGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3431878 50 + 3644372 GTTCCTGGAAATCTAACAAAAGGTTACA--CCATGAG--C--ATTTCTAAGGAGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3387092 50 - 10304083 GTTCCTGGAAATCGAACAAAAGGTTACA--CCATGAG--C--ATTTCTAAGGAGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3482908 50 - 107702431 GTTCCTGGAAATCTAACAAAAGGTTACA--CCATGAG--C--ATTTCTAAGGAGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1019996 50 + 1565135 GTTCCTGGAAATCGAACAAAAGGTTACA--CCATGAG--C--ATTTCTAAGGAGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3384512 50 - 13651311 GTTCCTGGAAATCGAACAAAAGGTTACA--CCATGAG--C--ATTTGTAAGGAGGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3473193 46 - 108792865 TTTCCTGGAGATG-----GCAGGCCACA-CAGAGGAG--C--ATTCCTAAGGAGGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3120737 51 - 7082604 CTTCCTGGATATGGAACAGAAGACCGCA-CAGAGGAG--C--GTCCCTAAGGAGGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 606318 51 + 5243153 CTTCCTGGAGATGGAACAGAAGGCCACA-CAGAGGAG--C--ATTCCTAAGGAGGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3350037 51 + 7587287 CTTCCTGGAGATGGAACAGAAGGCCACA-CAGAGGAG--C--ATTCCTAAGGAGGG i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 973191 51 + 1238772 GTTCCTAGAAATCTAACAAAAAGTCACA-CAGATCAT--C--AGTTACGAGGAGGA i proCoq1.NW_012151163v1 I 2131 C 0 s otoGar3.GL873658 2554010 53 + 5252280 GTTCCTGGACGTCTGTCAGAAAGTCACA-TTGGTCAGCAC--ATTCATAAGGAGAC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2050038 42 + 64289059 CTTCCTGGTCCT------AAGGGTCA----AGATAAA--C--AGATTTCAGGGTAA i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 585725 54 + 2232271 GTTCTTGGAAACCTAACCAAGAGTAACAACAGATAAA--CAGATTTACAAGGAGAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2659186 2250 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I a score=2738864.000000 s hg38.chr2_KI270769v1_alt 68295 211 + 120616 TAGGGGAGGATTTAGAGCAGGA-AAGGAATCT-----------------------GCAAAGATCATCAGAATAAATA---TGCAATTCATTGAGACAATCCATATTTTACATCCATTAAGAGAAGA---TATTCAGAATTT--CTTTTCACAAAAATAATGGTAT-AAGGGGAACATAAGCAGCT-AATGTGTTTTTCATTGCTGAAAGGCAAAGTGAGTTAAGTTTTTAATTCTAGCAATTAAG s panTro5.chr2A 3530089 211 + 111504155 TAGGGGAGGATTTAGAGCAGGA-AAGGAATCT-----------------------GCAAAGATCATCAGAATAAATA---TGCAATTCATTGAGACAATCCATATTTTACATCCATTAAGAGAAGA---TATTCAGAATTT--CTTTTCACAAAAATAATGGTAT-AAGGGGAACATAAGCAGCT-AATGTGTTTTTCATTGCTGAAAGGCAAAGTGAGTTAAGTTTTTAATTCTAGCAATTAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3390836 211 + 114371477 TAGGGGAGGATTTAGAGCAGGA-AAGGAATCT-----------------------GCAAAGATCATCAGAATAAATA---TGCAATTCATTGAGACAATCCGTATTTTACATCCATTAAGAGAAGA---TATTCAGAATTT--CTTTTCACAAAAATAATGGTAT-AAGGGGAACATAAGCAGCT-AATGTGTTTTTCATTGCTGAAAGGCAAAGTGAGTTAAGTTTTTAATTCTAGCAATTAAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 268680 210 + 637652 TAGGGGAGGATTTAGAGCAGGA-AAGGAATCT-----------------------GCAAAGATCATCAGAATAAATA---TGCAATTCATTGAGACAATCCATATTTTACATCCATTAAGAGAAGA---TATTCAGAATTT--C-TTTCACAAAAATAATGGTAT-AAGGGGAACATAAGCAGCT-AATGTGTTTTTCATTGCTGAAAGGCAAAGTGAGTTAAGTTTTTAATTCTAGCAATTAAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3064629 206 + 81552678 TAGGGGAGGATTTAGAGCAGGA-AAGGAATCT-----------------------GCAAAGATCATCAGAATAAATA---TGCAACTCATTGAGACAATCCATATTTTACATCCATTAAGAGAAGA---TATTCAGAATTT--CTTTTCACAAAAATAATGGTAT-AAGGGGAACATAAGCAGCT-AATGTGTTTTTAATTGCTGAAAGACAAAGTGAGTTAAGTTTTTAATTCTAGC-----AG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3328126 211 + 108979918 TAGGGGAGGATTTAAAGCAGGA-AAAGAAACT-----------------------GCAAAGATCATCAGAATAAATA---TGCAATTCATTGAGATAATCCATATTTTACCTCCATTAAGAGAAGA---TATTCAGAATTT--CTTTTCACAAAAGTAATGGTAC-AAGGGGAATATAAGCAGCT-AATGCGGTTTTAATTGCTGAAAGGCAAAGAGAGTTAAGTTTTTAATTCTAGCAATTAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5039264 211 - 111193037 TAGGGGAGGATTTAAAGCAGGA-AAAGAAACT-----------------------GCAAAGATCATCAGAATAAATA---TGCAATTCATTGAGATAATCCATATTTTACCTCCATTAAGAGAAGA---TATTCAGAATTT--CTTTTCACAAAAATAATGGTAC-AAGGGGAATATAAGCAGCT-AATGTGGTTTTAATTGCTGAAAGGCAAAGAGAGTTAAGTTTTTAATTCTAGCAATTAAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3431928 211 + 3644372 TAGGGGAGGATTTAAAGCAGGA-AAAGAAACT-----------------------GCAAAGATCATCAGAATAAATA---TGCAGTTCATTGAGATAATCCATATTTTACCTCCATTAAGAGAAGA---TATTCAGAATTT--CTTTTCACAAAAATAATGGTAC-AAGGGGAATATAAGCAGCT-AATGTGGTTTTAATTGCTGAAAGGCAAAGAGAGTTAAGTTTTTAATTCTAGCAATTAAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3387142 211 - 10304083 TAGGGGAGGATTTAAAGCAGGA-AAAGAAACT-----------------------GCAAAGATCATCAGAATAAATA---TGCAATTCATTGAGATAATCCATATTTTACCTCCATTAAGAGAAGA---TATTCAGAATTT--CTTTTCACAAAAATAATGGTAC-AAGGGGAATATAAGCAGCT-AATGTGTTTTTAATTGCTGAAAGGCAAAGAGAGTTAAGTTTTTAATTCTAGCAATTAAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3482958 207 - 107702431 TAGGGGAGGATTTAAAGCAGGA-AAAGAAACT-----------------------GCAAAGATCATCAGAATAAATA---TGCAATTCATTGAGGTAATCTGTATTTTACCTCCATTAAGAGAAAA---TATTCAGAATTT--CTTTTCACAAAAATAGTGGTAC-AAGGGGAATATAAGCAGCT-ACTGTGTTTTTAATTGCTGAAAGGC----AGAGTTAAGTTTTTAATTCTAGCAATTAAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1020046 211 + 1565135 TAGGGGAGGATTTAAAGCAGGA-AAAGAAACT-----------------------GCAAAGATCATCAGAATAAATA---TGCAATTCATTGAGATAATCCATATTTTACCTCCATTAAGAGAAGA---TATTCAGAATTT--CTTTTCACAAAAATAATGGTAC-AAGGGGAATATAAGCAGCT-AATGTGTTTTTAATTGCTGAAAGGCAAAGAGAGTTAAGTTTTTAATTCTAGCAATTAAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3384562 211 - 13651311 TAGGGGAGGATTTAGAGCAGGA-AAGGAAACT-----------------------GCAAAGATCATCGGAATAAATA---CGCAATTCATTGAGATAATCCATATTTTACCTCCATTAAGAGAAGA---TATTCAGAATTT--CTTTTCACAAAAATAATGGTAC-AAGGGGAATATAAGCAGCT-AATGTGTTTTTAATTGCTGAAAGGCAAAGAGAGTTAAGTTTTTAATTCTAGCAATTAAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3473239 194 - 108792865 TA----GGGTTGCAGAGCAG------GAGTCT-----------------------GCAGAGATCATCAGAGTGAATA---TGTGGTTCATTGAGACAGTCCCTAGTTTACATCCGTTAGGAGAAGA---TATTCAGAATAT--CTTTTCACAGAAATAATGGTAC--AGGGGAGCATGCAAAGCT-AGTGTG-TTTTAATTGCTGAAAGGCAAAGTG-----AGTTTTCAATTTTAGCAATT-TT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3120788 222 - 7082604 CA---GGGGTTGCAGAGCAG------GGGTCTGCAGAGATCCTCGGAGTAAATACGCAGAGATCCTCAGAGTAAATA---CGCAGTTCAGTT---CAGTCCGTAGTTCACATCCATTAGGAGAAGA---TATTCAGAATTT--CCTTTCGTAGAAATAATGGTAC-AAGGGGAACATAGAAAGCT-AATGTGTTTTTAATTGCTGAAAGGCAAAGTGAGTCAAGTTTTCGATTTTAGCAGTT-CG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 606369 198 + 5243153 TA--GGGGGATGCAGAGCAG------GGGTCT-----------------------GCAGAGATCGTCGGAGTAAACG---TGCAGTTCATTGAGACAATCCGTAGTTTACATCCATTAGGAGAAGA---CATTCAGAATTT--CTTTTCACAGAAATAATGGTAC-AAGGGGAACATAGAAAGCT-AATGTGTTTTTAATTGCTGAAAGGCAAAGTG-----AGTTTTCAATTTTAGCAGTT-CA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3350088 202 + 7587287 TG---GGGGATGCAGAGCAG------GAGTCT-----------------------GCAGAGATCATCAGAGTAAATA---TGCAATTCATTGAGACAATCCGTAGTTTACATCCATTAGGAGATGA---TATTCAGAATTT--CTTTTCACAGAAATAATGGTAC-AAGGGGAACATATAAAGCT-AATGTGTTTTTAATTGCTGAAAGGCAAAGTGAGTTAAGTTTTCAATTTTAGCAATT-CG i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2661436 212 - 159902609 TAGGGGAAGATTTAGGGCTGCA-GAGGAATCT-----------------------GCAGAAATAATCAAAATAGATC---TGCAGTTCATTGAGACAATCCAAATTTTACATTCATTAAGAAAAGAT--TGTTCAAAATTT--CTTTTCACAAAAATAATGTTAT-AAGGGGAATACAAGCAGCT-AATGTACTTTTCATTGCTGAAAGGCAAAGCGAGTTAAGTTTTTAATTCTAGCAATTAAG i micMur3.chr8 I 2250 C 0 s proCoq1.NW_012151163v1 973242 212 + 1238772 CAGGGGAAGATTTAGAGCTAGA-AAGGAATCT-----------------------GCAGAGATAATCAAAATAAATC---TGCAATTCGTTGAGACAATCCAAATTTTACATTCATGAAGAAAAGAT--TGTTCACAATTT--CTTTTCACAAAAACAATGTTAC-AAGGGGAATACAAGCAGCT-GATGTACTTTTAATTGGTGAAAGGCAAAGCAAGTTAAGTTTTTAATTCTAGCAATTAAG i proCoq1.NW_012151163v1 C 0 I 1114 s otoGar3.GL873658 2554063 192 + 5252280 TAGGGGAAGATTTAGGGCTGGAGGAGGAATCT-----------------------GTAAAG---ATCAAAATAAATC------------ATGAGACCATCCATGTTTTATATTCATTAAGAAAAGATAGTGTTTAGAATTT--CTTTTCAC-AAAATAAGGTTGT------------AAGCAGCTCTATGTACCTTTAATTGCTAAAAGGCAAAGTGAGTTATGTTTTTAATTCTCACAATTAAG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2050081 192 + 64289059 TAGGGAAGAATTCGCACTTG---GAGAAGTCC-----------------------GT-----------GGGTACGTACACTGCACTTCGCTGAGACAGCCCACCTTTTACGTTCCTCAACAAGATAC--TGTTCAGAATTTTCCTTTTCAC-AAAATGATGTTGT------------AAGCAGTT-AGTGTATTTTTAATTGCTAAAAGGCAAAGTGAGTTGAGTTCTTAACTTTGGCAATTAAG i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 585779 215 + 2232271 TCAGGGAAGAATTAGAGCTCGA-AAGAAATCT-----------------------GCAAAGATAATCAAAAGAAATC---TGCAATTCATTGAGACAATGCACATTTTACATTCATTAAGAACAGATATTGTTCAGAATTT--CTTTTCATAAAAATAATGTTATTAAGGGGAATATAAGCAGCT-AATATATTTTTAATTGCTGAAAGGCAAATTGAGTTAAGTTCTTAATTCTAGCAATTAAA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91425533 1810 - 120129022 I a score=43480.000000 s hg38.chr2_KI270769v1_alt 68506 3 + 120616 TTT s panTro5.chr2A 3530300 3 + 111504155 TTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3391047 3 + 114371477 TTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 268890 3 + 637652 TTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3064835 3 + 81552678 TTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3328337 3 + 108979918 TTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5039475 3 - 111193037 TTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3432139 3 + 3644372 TTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3387353 3 - 10304083 TTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3483165 3 - 107702431 TGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1020257 3 + 1565135 TTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3384773 3 - 13651311 TTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3473433 3 - 108792865 TTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3121010 3 - 7082604 TTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 606567 3 + 5243153 TTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3350290 3 + 7587287 TTT i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2661648 3 - 159902609 TTT i micMur3.chr8 C 0 I 1049 s otoGar3.GL873658 2554255 3 + 5252280 TTT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2050273 2 + 64289059 -TT i canFam3.chr17 C 0 I 2 s dasNov3.JH580157 585994 3 + 2232271 CTT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91425533 1810 - 120129022 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I a score=701235.000000 s hg38.chr2_KI270769v1_alt 68509 69 + 120616 CTGTGTGTTCTCCTGAAGCAC-ACCGTAAATGCACATCATTTCTAGGTGATTGTTATCTCACAGTGGACG s panTro5.chr2A 3530303 63 + 111504155 CTATGTGTTCTCCTGAAGCAC-ACCGTAAAT------CATTTCTAGGTGATTGTTATCTCACAGTAGACG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3391050 69 + 114371477 CTATGTGTTCTCCTGAAGCAC-ACCGTAAATACACATCATTTCTAGGTGATTGTTATCTCACAGTAGACG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 268893 69 + 637652 CTGTTTGTTCTCCTGAAGCAC-ACCGTAAATACACATCATTTCTAGGTGATTGTTATCTCACAGTGGACG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3064838 69 + 81552678 CTGTGTGTTCTCCTGAAGCAC-ACACTGAATACACATCATTTCTAGGTGATTGTTATCTCACAGTGGACG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3328340 69 + 108979918 CTGTGTGTTCTCCTGAAGCAC-ACGGTGAATACACGTCATTTCCAGGTGATTGTTATCTCACTGTGGACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5039478 69 - 111193037 CTGTGTGTTCTCCTGAAGCAC-ACGGTGAATACACGTCATTTCCAGGTGATTGTTATCTCACTGTGGACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3432142 69 + 3644372 CTGTGTGTTCTCCTGAAGCAC-ACCGTGAATACACATCATTTCCAGGTGATTGTTACCTCACTGTGGACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3387356 69 - 10304083 CTGTGTGTTCTCCTGAAGCAC-ACCGTGAATACACATCATTTCTAGGTGATTGTTATCTCACTGTGGACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3483168 69 - 107702431 CTGTGTGTTCTCCTGAAGCAC-ACCGTGAATACACGTCATTTCTCGGTGATTGTTATCTCACTGTGGACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1020260 69 + 1565135 CTGTGTGTTCTCCTGAAGCAC-ACCGTGAATACACATCATTTCTAGGTGATTGTTATCTCACTGTGGACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3384776 69 - 13651311 CTGTGTGTTCTCCTGAAGCAC-ACCATGAATACACATCATTTCTAGGTGATTGTTATCTCACTGTGGACA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3473436 69 - 108792865 CTGGTTGTTCTCCTGAAGCAC-ACCGTGAGTATACATCATTTCTGGGTGATTGTGATATCACAGTGCACC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3121013 69 - 7082604 CTGGGTGTTCTCCTGAAGCAC-ACCTTGAGTACACATCATTTCTAGGTGACTGTGACCTCACAGTGCATC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 606570 66 + 5243153 CTGGGTGTT---CTGAAGCAC-ACCATGAGTACACATCATTTCTAGGTGATTGTGACCTCACGGTGCACC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3350293 69 + 7587287 CTGGGTGTTCTCCTGAAGCAC-ACCATGAGTACACATCATTCCTAGGTGATTGTGATCTCACAGTGCACC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2554258 67 + 5252280 CTGTGTGCTCCT---AAGCACTCCCAAGAATAAACATAATTTCTAGACGACCATCACTTCAAAACTGACC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2050277 63 + 64289059 CTGTGT-----TCCGAAGCGT--CCAAGGACGAACATGGTTTCCAGGCAGTGCTTAACCCTCAGATAACG i canFam3.chr17 I 2 I 1972 s dasNov3.JH580157 585997 66 + 2232271 ---TTTTTTGTTCTTAAGCAC-TCCAAGAATAAACATAATTTCTAGGTGATCATTATTTCAAAATTAACC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2661651 1049 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I a score=221006.000000 s hg38.chr2_KI270769v1_alt 68578 28 + 120616 CTTGGTGCCAGCGG----------------------TG-------GGTCAGCTTC-AG s panTro5.chr2A 3530366 28 + 111504155 CTTGGTGCCAGCGG----------------------TG-------GGTCAGCTTC-AG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3391119 28 + 114371477 CTTGGTGCCAGCGG----------------------TG-------GGTCAGCTTC-AG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 268962 28 + 637652 CTTGGTGCCAGCAG----------------------TG-------GGTCAGCTTC-AG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3064907 28 + 81552678 CTTGGTGCCAGCGG----------------------TG-------GGTCAGCGTC-GG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3328409 35 + 108979918 CGTGGTGCCAGCTG----------------------CGGGAGGAAGGTCAGCTTC-AG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5039547 35 - 111193037 CGTGGTGCCAGCTG----------------------CGGGAGGAAGGTCAGCTTC-AG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3432211 35 + 3644372 CGTGGTGCCAGCTG----------------------CGGGAGGAAGGTCAGCTTC-AG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3387425 35 - 10304083 GGTGGTGCCAGCTG----------------------CGGGAGGAAGGTCAGCTTC-AG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3483237 35 - 107702431 CTTGGTGCCAGCTG----------------------CGAGAGGAAGGTCAGCTTC-AG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1020329 35 + 1565135 GGTGGTGCCAGCTG----------------------CGGGAGGAAGGTCAGCTTC-AG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3384845 35 - 13651311 CTTGGTGCCAGCTG----------------------CGGGAGGAAGGTCAGCTTC-AG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3473505 36 - 108792865 CTCTGTGTCAGCAG----------------------CAGGAGGAAGGTCAGCTTCTGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3121082 36 - 7082604 CTCCGCATCAGCAG----------------------CGGGAGGAAGGTCAGCTTCTGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 606636 36 + 5243153 CTCCATGTCAGCAG----------------------CGGGAGGAAGGTCAGCTTCTGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3350362 36 + 7587287 CTCCGTGTCAGCAG----------------------CGGGAGGAAGGTCAGCTTCCGG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2554325 30 + 5252280 TTTGGTGT-GGCAG----------------------TG----GAAGATGGGCTGC-AG i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 586063 57 + 2232271 ATTGATATTGGCAAGAGACATAAGAAAAATTTCAGTTGGCAAGCAGGTCAGTATA-AG i dasNov3.JH580157 C 0 I 208 e micMur3.chr8 2661651 1049 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e canFam3.chr17 2050340 1972 + 64289059 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I a score=462125.000000 s hg38.chr2_KI270769v1_alt 68606 45 + 120616 CCTCCTAAATCACAGCCTCAGAGGCAGCCAGGGACACACGGCTCC s panTro5.chr2A 3530394 45 + 111504155 CCTCCTAAATCACAGCCTCAGAGGCAGCCAGGGACACACGGCTCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3391147 45 + 114371477 CCTCCTAAATCACAGCCTCAGAGGCAGCCAGGGACACACGGCTCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 268990 45 + 637652 CCTCCTAAATCACAGCCTCAGAGGCAGCCAGGGACACACGGCTCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3064935 45 + 81552678 CCTCCTAAATCACAGCCTCAGAGGCGGCTGGGGACACACGGCTCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3328444 45 + 108979918 CCTCCTAAATCGCAGCCTCAGAGGCAGCCGGGGACACACGGCTCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5039582 45 - 111193037 CCTCCTAAATCGCAGCCTCAGAGGCAGCCGGGGACACACGGCTCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3432246 45 + 3644372 CCTCCTAAATCGCAGCCTCAGAGGCAGCCGGGGACACACGGCTCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3387460 45 - 10304083 CCTCCTAAATCACAGCCTCAGAGGCAGCCGGGGACACACGGCTCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3483272 45 - 107702431 CCTCCTAAATCACAGCCTCAGAGGCAGCCGGGGACACACAGCTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1020364 45 + 1565135 CCTCCTAAATCACAGCCTCAGAGGCAGCCGGGGACACACGGCTCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3384880 45 - 13651311 CCTCCTAAATCACAGCCTCAGAGGCGGCCAGGGACACGCGGCTCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3473541 45 - 108792865 GCTCCTGAATCATAGCCTCAGAAGCAGCCAGGGACACGTGGCTCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3121118 45 - 7082604 GCTCCTGAATCACAGCCTCAGAAGCAGCCAGGGACACGCGGCTCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 606672 45 + 5243153 GCGCCTGAATCACAGCCTCAGAAGCAGCCGGGGACACACGGCTCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3350398 45 + 7587287 GCTCCTGAATCACAGCCTCAGAAGCAGCCAGGGACACGCAGCTCC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2554355 39 + 5252280 GGGCAAGTAGGTCAGTCTCAAG------CAGAAACGCAAGGTTTC i otoGar3.GL873658 C 0 I 347 e micMur3.chr8 2661651 1049 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e canFam3.chr17 2050340 1972 + 64289059 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I e dasNov3.JH580157 586120 208 + 2232271 I a score=764984.000000 s hg38.chr2_KI270769v1_alt 68651 81 + 120616 CAGTGCCCAGCGATGAGGGAGGCCAGGAGCACTCCCAGGGCCTGGTGCTGCCCAGGGTGGCATCTTGGCACTTTGCAGTTG s panTro5.chr2A 3530439 81 + 111504155 CAGTGCCCAGCGATGAGGGAGGCCAGGAGCGCTCCCAGGGCCTGGTGCTGCCCAGGGTGGCATCTTGGCACTTTGCAGTTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3391192 81 + 114371477 CAGTGCCCAGCGATGAGGGAGGCCAGGAGCGCTCCCAGGGCCTGGTGCTGCCCAGGGTGGCATCTTGGCACTTTGCAGTTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 269035 81 + 637652 CAGTGCCCAGCGATGAGGGAGGCCACGAGCACTCCCAGGGCCTGGTGCTGCCCAGGGTGGCATCTTGGCACTTTGCAGTTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3064980 81 + 81552678 CAGTGCCCAGTGATGAGGGAGGCTGGGAGCACTCCCAGGGACTGGTGCTGCCCAGGGTGGCATCTTGGCACTTCGCAGTTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3328489 80 + 108979918 CTGTGCCCAGCAATGAGGGAGGCTGGGTGCGCTCCCAGGCACTGGTGCTGCCCAGGGTGGCATCTTGGCA-TTCACAGTTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5039627 80 - 111193037 CTGTGCCCAGCAATGAGGGAGGCTGGGAGCGCTCCCAGGCACTGGTGCTGCCCAGGGTGGCATCTTGGCA-TTCACAGTTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3432291 80 + 3644372 CTGTGCCCAGCAATGAGGGAGGCTGGGAGCGCTCCCAGGCACTGGTGCTGCCCAGGGTGGCATCTTGGCA-TTCACAGTTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3387505 81 - 10304083 CAGTGCCCAGCAATGAGGGAGGCTGGGAGCGCTCCCAGGCACTGGTGCTGCCCAGGGTGGCATCTTGGCACTTCACAGTTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3483317 81 - 107702431 CAGTGCCCAGCAATGAGGGAGGCTGGGAGCGCTCCCAGGCACTGGTGCTGCCCAGGGTGGCATCTTGGCACTTCACAGTTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1020409 81 + 1565135 CAGTGCCCAGCAATGAGGGAGGCTGGGAGCGCTCCCAGGCACTGGTGCTGCCCAGGGTGGCATCTTGGCACTTCACAGTTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3384925 81 - 13651311 CAGTGCCCAGCAATGAGGGAGGCTGGGAGCGCTCCCAGGGACTGGTGCTGCCCAGGGTGGCATCTTGGCACTTCACAGTTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3473586 81 - 108792865 CAGTGCCTGGCAATGAGGGAGGCTGGGAGCGCTCCCAGGGGCTGGTGCTGCTTGTGGTAGCATCCTTGCACTTGGCAGTTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3121163 81 - 7082604 CAGTGCCCGGCAGTGAGGGAGGCCAGGAGTGCTCCCAGGGGCTGGTGCTGCTCGTGGTAGCCTCCTGGCACTTGGCAGTTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 606717 81 + 5243153 CAGTGCCCGGCAATGAGGGAGGCTGGGAGCACTCCCAGGGTCTGGTGCTGCTCATGGTAGCATCCTGGCACTTGGCAGTTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3350443 81 + 7587287 CAGTGCCCGCCAATGAGGGAGGCTGGGAGCGCTCCCAGGGGCTGGTGCTGCTTGTGGTAGCATCCTGGCACTTGGCAGTTG i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2661651 1049 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e canFam3.chr17 2050340 1972 + 64289059 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I e dasNov3.JH580157 586120 208 + 2232271 I e otoGar3.GL873658 2554394 347 + 5252280 I a score=1983328.000000 s hg38.chr2_KI270769v1_alt 68732 251 + 120616 GAAGTGTGGACTTTTCTTCGAGGAAGTAGACACAGCACAGGCGCAAGGAGCGCTGGACAAGGGGTCAGA---TGGAAGCGTCCCTGGCCTCTGTGGACCTCAGCCTGCCTGTCAATAATATGTTCATTTCAGATTAGCTCAGTCCTCAACCTGCGCCTTCCTCCTGGTCATCCCAATG-ATAAACA----------------------------------------GGCACCATTGGTCAGCCCAC-CCTCCCCC--CAGGGCAGCTCCCAGGGGACCTTT-------GCAGACCCCAAGAAGGC s panTro5.chr2A 3530520 250 + 111504155 GAAGTGTGGACTTTTCTTGGAGGAAGTAGACACAGCACAGGCACAAGGAGCGCTGGACAAGGGGTCAGA---TGGAAGCGTCCCTGGCCTCTGTGGACCTCAGCCTGCCTGTCAATAATATGTTCATTTCAGATTAGCTCAGTCCTCAACCTGCGCCTTCCTCCTGGTCATCCCAATG-ATAAACA----------------------------------------GGCACCATTGGTCAGCCCAC-CCTCCCCC---AGGGCAGCTCCCAGGGGACCTTT-------GCAGACCCCAAGAAGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3391273 250 + 114371477 GAAGTGTGGACTTTTCTTGGAGGAAGTAGACACAGCACAGGCACAAGGAGCGCTGGACAAGGGGTCAGA---TGGAAGCGTCCCTGGCCTCTGTGGACCTCAGCCTGCCTGTCAATAATATGTTCATTTCAGATTAGCTCAGTCCTCAACCTGCGCCTTCCTCCTGGTCATCCCAATG-ATAAACA----------------------------------------GGCACCATTGGTCAGCCCAC-CCTCCCCC---AGGGCAGCTCCCAGGGGACCTTT-------GCAGACCCCAAGAAGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 269116 247 + 637652 GAAGTGTGGACTT---TTGGAGGAAGTCGACACAGCACAGGCGCAAGGAGTGCTGGACAAGGAGTCAGA---TGGAAGCGTCCCTGGCCTCTGCGGACCTCAGCCTGCCTGTCAATAACATGTTCATTTCAGATTAGCTCAGTCGTAAACCTGCGCCTTCCTCCTGGTCATCCCAGTG-ATAAACA----------------------------------------GGCACCATTGGTCAGCCCAC-CCTCCCCC---AGGGCAGCTCCCAGGGGACCTTT-------GCAGACCCCAACAAGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3065061 248 + 81552678 GAAATGTGGACTTTTCTTGGAGGAAGTAGACACAGCACAGGCGCAAGGAGCACTGGACAAGGGGTCAGA---TGGAAACGTCCCTGGCCTCTCTGGACCTCAGCTTGCCTGTCAATAACA--TTCATTTCAGATTAGCTCAGTCCTCAACCTGCGCCTTCCTCCTGGTCATCCCAATG-ATAAACA----------------------------------------GGCACCATTGGTCAGCCCAC-CCTCCCCC---GGGGCAGCTCCCAGGGGACCTTT-------GCAGACCCCAATAAGTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3328569 236 + 108979918 G-GGTGTGGACTTTTCTTAGAGGAAGTGGGCATAGTACAGGCGCAAGGAGCACCGGACAGGGGGTCAGA---TGGAAATGTCCCTGTCCTCTCTGGACCTCAGCTTGCCTGTCGATAACATACTCATTTCAGATGAGCTCAGTCCTCAACCTGCGCCTTCCCCCTGGCCATCCCAGTA-ATAAACA----------------------------------------GGTGCTATTGGTCAGCCCGC-CCTCC---------------CCCAGGGG-CCTTT-------GCAGACCCCAGCAAGTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5039707 236 - 111193037 G-GGTGTGGACTTTTCTTAGAGGAAGTGGGCATAGTACAGGCGCAAGGAGCACCGGACAGGGGGTCAGA---TGGAAATGTCCCTGTCCTCTCTGGACCTCAGCTTGCCTGTCGATAACATACTCATTTCAGATGAGCTCAGTCCTCAACCTGCGCCTTCCCCCTGGCCATCCCAGTA-ATAAACA----------------------------------------GGTGCTATTGGTCAGCCCGC-CCTCC---------------CCCAGGGG-CCTTT-------GCAGACCCCAGCAAGTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3432371 236 + 3644372 G-GGTGTGGACTTTTCTTAGAGGAAGTGGGCATAGTACAGGCGCAAGGAGCACCGGACAGGGGGTCAGA---TGGAAATGTCCCTGTCCTCTCTGGACCTCAGCTTGCCTGTCGATAACATACTCATTTCAGATGAGCTCAGTCCTCAACCTGCGCCTTCCCCCTGGCCATCCCAGTA-ATAAACA----------------------------------------GGTGCTATTGGTCAGCCCGC-CCTCC---------------CCCAGGGG-CCTTT-------GCAGACCCCAGCAAGTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3387586 235 - 10304083 G-GGTGTGGACTTTTCTTAGAGGAAGTGGGCACAGTACAGGCGCAAGGAGCACTGGAC-GGGGGTCAGA---TGGAAACGTCCCTGTCCTCTCTGGACCTCAGCTTGCCTGTCGATAACATACTCATTTCAGATGAGCTCAGTCCTCAACCTGCGCCTTCCCCCTGGCCATCCCAGTA-ATAAACA----------------------------------------GGTGCTATTGGTCAGCCCGC-CCTCC---------------CCCAGGGG-CCTTT-------GCAGACCCCAGCAAGTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3483398 226 - 107702431 G-GGTGTGGACTTATT--------AGTGGGCACAGTACAGGCGCAAGGAGCACTGGAC-GGGGGTCAGA----GGAAACGTCCCTGTCCTCTCTGGACCTCAGCTTGCCTGTCGATAACATACTCATTTCAGATGAGCTCAGTTCTCAACCTGCGCCTTCCCCCTGGCCATCCCAGTA-ATAAACA----------------------------------------GGTGCTGTTGGTCAGCCCGC-CCTGC---------------CCCAGGGG-CCTTT-------GCAGACCCCAGCAAGTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1020490 236 + 1565135 G-GGTGTGGACTTTTCTTAGAGGAAGTGGGCACAGTACAGGCGCAAGGAGCACTGGAC-GGGGGTCAGA---TGGAAACGTCCCTGTCCTCTCTGGACCTCAGCTTGCCTGTCGATAACATACTCATTTCAGATGAGCTCAGTCCTCAACCTGCGCCTTCCCCCTGGCCATCCCAGTA-ATAAACA----------------------------------------GGTGCTATTGGTCAGCCCGC-CCTCC--------------TCCCAGGGG-CCTTT-------GCAGACCCCAGCAAGTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3385006 248 - 13651311 G-GGTGTGGACTTTTCTTAGAGGAAGTGGGCACAGTACAGGCGCAAGGAGCACTGGACAGGGGGTCAGA---TGGAAACGTCCCTGTCCTCTCTGGACCTCAGCTTGCCTGTCGATAACATACTCATTTCAGATGAGCTCAGTCCTCAACCTGCGCCTTCCCCCTGGCCAACCCAGTA-ATAAACA----------------------------------------GGTGCCGTTGGTCAGCCCGC-CCTCCCCC---AGGGCAGCTCCCAGGGG-CCTTT-------GCAGACCCCAGCAAGTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3473667 154 - 108792865 GAAGTGTGGACTTCTCGTGGAGGAAGTAG-----------------------------------------------------------------------------------------------------------TCTCAGTCCTCAACCTGTGCCTCCCTCCTGGTCATCCCAATG-ATAAACA----------------------------------------GATGCCGTTGGTCAGCCCGCTCCCCCCCC---AGGGCAGCTCCCAGGGGGCCTTTGCACACCGCACACCCCAACAAGTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3121244 249 - 7082604 GAAGTGTGGACTTTTCTTGGAGGAAGTGGACACAGCACAGGCACAA-GAGGACTGGACGAGAGATCAAA---TGGACACATCCCTGGCCTGTCGGGACCTCAGCCTGCCTGTCAATAACATACCCATTTCAGATCAGCTCAGTCCTCAACCTGCGCCTTCCTCCTGGTCATCCCAGTG-ATAAACA----------------------------------------GATGCCACTGGTCAGCCCGC-CCTCCCCC---AGGGCAGGTCCCAGGGGACCTTT-------GCAGACCCCAACAAGTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 606798 237 + 5243153 GAAGTGTTGACTTTTCTTGGAGGAAGTGG--ACAGCACAGGCACAA-GAGCACTGGACGAGAGGTCAAA---TGGACACATCCCTGGCCTGTCGGGACCTCATCCTGCCTGTCAATAACATATTCATTTCAGATCAGCTCAGTCCTCAACCTGCGCCTTCCTCCTCGTCATCCCAATG-ATAAACA----------------------------------------GACGTCACTGGTCAGCCCGC-CCTCCCCC---AGGGCAGCTCCCAGGGGG-----------------CCCCAACAAGTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3350524 249 + 7587287 GAAGTGTGGACTTTTCTTGGAGGAAGTGGACACAGCATAGGCATAA-GAGCACTGGATGAGGGGTCAAA---TGGACACATCCCTGGCCTGTCGGGACCTCAGCCTGCCTGTCAGTAACATATTCATTTCAGATCAGCTCAATCCTCAACCTTCACCTTCCTCCTGGTCATCCCAATG-ATAAACA----------------------------------------GACGCCATTGGTCAGCCCGC-CCTCCCCC---AGGGCAGCTCCCAGGGGGCCTTT-------GCAGACCCCAGCAAGTC i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 586328 291 + 2232271 GAAGGTTGGATTCCTCCTAAACCAAGT--TCAGAGCAGTGGAGTGAAGAGCACTGGACTGGGAGGCAGGGATCGGATATGTCTGTGGGCTCCCTGGGCCTCAATTTATTTATCAATAAAAGG----TTTTAATTGAGCTCTGTCTTCATACCAAACCTTACTCCTAATAATGCCAGAGTAAAAACAGAAAAGTTGAGCTACTGGGCGGGAGGGCAACAGGAGATTGGGAGCCGTTGGTAAGCCCCT-CCCTTCCCTCTAAGGAAGCTCCTGGGAGACTTTT-------GCAAACCTTGAGGACTA i dasNov3.JH580157 I 208 C 0 e micMur3.chr8 2661651 1049 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e canFam3.chr17 2050340 1972 + 64289059 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I e otoGar3.GL873658 2554394 347 + 5252280 I a score=1606223.000000 s hg38.chr2_KI270769v1_alt 68983 179 + 120616 CACAAAGCC-AGTTTGGAAACTACTAGAA--GAGATGGGCCCTGAAGGTTTGAAATCAGTGGAGGGAT------------------------------------------------------------------------------------GGCTGCTAACTAAATAATGTGCAGGGGAGAGCAGGGA------GGGACGGGCCAGGCTCAGGGTCGCGGTCAGCCACCGTGTGGCAGC-AGGTGC--TAGGGAAGGAAGC-CAGCTGCAGGGGA s panTro5.chr2A 3530770 179 + 111504155 CACAAAGCC-AGTTTGGAAACTACTAGAA--GAGATGGGCCCTGAAGGTTTGAAATCAGTGGAGGGAT------------------------------------------------------------------------------------GGCTGCTAACTAAATAATGTGCAGGGGAGAGCAGGGA------GGGACGGGCCAGGCTCAGGGTCGCGGTCAGCCACCGTGTGGCAGC-AGGTGC--TAGGGAAGGAAGC-CAGCTGCAGGGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3391523 179 + 114371477 CACAAAGCC-AGTTTGGAAACTACTAGAA--GAGATGGGCCCTGAAGGTTTGAAATCAGTGGAGGGAT------------------------------------------------------------------------------------GGCTGCTAACTAAATAATGTGCAGGGGAGAGCAGGGA------GGGACGGGCCAGGCTCAGGGTCGCGGTCAGCCACCGTGTGGCAGC-AGGTGC--TAGGGAAGGAAGC-CAGCTGCAGGGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 269363 179 + 637652 CACAACGCC-AGTTTGGAAACTACTAGAA--GAGATGGGCCCTGAAGGTTTGAAATCAGTGGAGGGAT------------------------------------------------------------------------------------GGCTGCTAACTAAATAATGTGCAGGGGAGAGCAGGGA------GGGACGGGCCAGGCTCAGGGTCGCGGTCAGCCACCGTGTGGCAGC-AGGTGC--TAGGGAAGGAAGC-CAGCTGCAGGGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3065309 174 + 81552678 CACAAAGCC-AGTTTGGAAAGTACTAGAA--GAGATGGGCCCTGAAGGTTTGAAATCAGTGGAGGGAT------------------------------------------------------------------------------------GGCTGCTAACTAAAGAATGTGCAGGGGAGAGCAGGGA------GGGACAGGCCAGGCCAAAGGTTGCGGTCAGCCACC-----GCACC-GGGTGC--TAGGGAAGGAAGC-CGGCTGCAGGGGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3328805 179 + 108979918 CACAAAGCC-AGTTTGGAAACTTCTAGAA--GAGATGGGCCCTGAAGGTTTGAAATCAGTGGAGGGAT------------------------------------------------------------------------------------GGCTGCTAACTAATGAATGTGCAGGGGAGAGCAGGGA------GGGACGGGCCAGGCTCAGGGTCGCGGTCAGCCACCGTGAGGCAGT-GGGTGC--TAGGGAAGGAAGC-TGGCTGCAGGGGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5039943 179 - 111193037 CACAAAGCC-AGTTTGGAAACTTCTAGAA--GAGATGGGCCCTGAAGGTTTGAAATCAGTGGAGGGAT------------------------------------------------------------------------------------GGCTGCTAACTAATGAATGTGCAGGGGAGAGCAGGGA------GGGACGGGCCAGGCTCAGGGTCGCGGTCAGCCACCGTGAGGCAGT-GGGTGC--TAGGGAAGGAAGC-TGGCTGCAGGGGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3432607 179 + 3644372 CACAAAGCC-AGTTTGGAAACTTCTAGAA--GAGATGGGCCCTGAAGGTTTGAAATCAGTGGAGGGAT------------------------------------------------------------------------------------GGCTGCTAACTAATGAATGTGCAGGGGAGAGCAGGGA------GGGACGGGCCAGGCTCAGGGTCGCGGTCAGCCACCGTGAGGCAGT-GGGTGC--TAGGGAAGGAAGC-TGGCTGCAGGGGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3387821 179 - 10304083 CACAAAGCC-AGTTTGGAAACTTCTAGAA--GAGATGGGCCCTGAAGGTTTGAAATCAGTGGAGGGAT------------------------------------------------------------------------------------GGCTGCTAACTAACGAATGTGCAGGGGAGAGCAGGGA------GGGACGGGCCAGGCTCAGGGTCGCGGTCAGCCACCGTGAGGCAGT-GGGTGC--TAGGGAAGGAAGC-TGGCTGCAGGGGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3483624 263 - 107702431 CACAAAGCC-AGTTTGGAAACTTGTAGAA--GAGATGGGCCCTGAAGGTTTGAAATCAGTGGAGGGATGGCTGCTAAGGTTTGAAGTCAGTGGAGGGATGGTTTGAAATCAGTGGAGGGATGGCTGCTAAGGTTTGAAATCAGTGGAGGGAGGGCTGCTAACTAACGAATATGCAGGAGAGAGCAGGGA------GGGGTGGGCCAGGCTCAGGGTCGAGGTCAGCCACCGTGAGGCAGT-GGGTGC--TAGGGAAGGAAGC-TGGCTGCAGGGGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1020726 179 + 1565135 CACAAAGCC-AGTTTGGAAACTTCTAGAA--GAGATGGGCCCTGAAGGTTTGAAATCAGTGGAGGGAT------------------------------------------------------------------------------------GGCTGCTAACTAACGAATATGCAGGGGAGAGCAGGGA------GGGACGGGCCAGGCTCAGGGTCGCGGTCAGCCACCGTGAGGCAGT-GGGTGC--TAGGGAAGGAAGC-TGGCTGCAGGGGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3385254 179 - 13651311 CACAAAGCC-AGTTTGGAAACTTCTAGAA--GAGATGGGCCCTGAAGGTTTGAAATCAGTGGAGGGAT------------------------------------------------------------------------------------GGCTGCTAACTAACGAATGTACAGGGGAGAGCAGGGA------GGGACAGGCCAGGCTCAGGGTCGTGGTCAGCCACCGTGTGGCAGC-GGGTGC--TAGGGAAGGAAGC-TGGCTGCAGGGGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3473821 170 - 108792865 TACAAAGCC-AGTTTGAAAACTACTATAA--GAGATGGGCCCTG-AGGTTGGGAAGCAGTGGGGGGAA------------------------------------------------------------------------------------GGCTG----CTAACGGATGTGCAGGGGAGAGCACAGA------GGGGTG-GCCAGGCTCAGGGTCACGGCCAGCCAGTGTGTGGCAGC-GGGGGC--TGGGAAAGGAGGC-CAGCTGC---GGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3121493 149 - 7082604 CACAAAGCC-AGTTTGAAAACTACTAAA-----------------------------AGTGGGGGGAA------------------------------------------------------------------------------------GGCTGCTAACTAACGGATGTGCAGGGGAGAGCAGGGA------GGGGCA-GCCAGGCTCGGGGTCATGGCCAGCCAGCATGTGGCAGCGGGGGGC--TAGGAAAGCAGGC-CAGCTGC---GGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 607035 175 + 5243153 CACAAAGCC-AGTTTGAAAACTACTAGAA--GAGATGGGCCCTGAAGGTTGGGAAGCAGTGGGGAGAA------------------------------------------------------------------------------------GGCTGCTAACTAATGGATGTGCAGGGGAGAGCAGGGA------GGGGCA-GCCAGGCTCAGGGTCACGGCCAGCCAGCGCGTGGCAGC-GGGGGC--TAGGAAAGGAGGG-CAGCTGC---AGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3350773 176 + 7587287 CACAAAGCC-AGTTTGAAAACTACTAGAA--GAGATGGGCCCTGAAGGTTGGAAAGCAGTGGGGGGAA------------------------------------------------------------------------------------GGCTGCTAACTAACGGATGTGCAGGGGAGAGTAGGGA------GGGG---GCCAGGCTCAGGGTCACTGCCAGCCAGCGTGTGGCAGC-GGGGGC--TAGGAAAGGAGGC-CAGCTGCAGGGGA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2554741 124 + 5252280 cacaaagcc--------------ctagaaagaagatagagcctgttgtttcca----------gggat------------------------------------------------------------------------------------cacttccatccaa-------------aagattaaggc------g------cccaggccttgag--aagatcagtc----cgtggccca-aggtca--taggtaa----------ctggcgtgga i otoGar3.GL873658 I 347 C 0 s dasNov3.JH580157 586619 171 + 2232271 CACGAAGCCCAGTTTGAAAACCCCTAGAA--CAGATGGGTTC---AGGTTGAAAA----------GAT------------------------------------------------------------------------------------GGCTGATAACTAAGGGCTATGT-GGGGAGAATAGATGAAATCTGTGATGAAACATATCAAGAA--GCAGTTG--CTCTACGTGACAAC-AGATGCTGTGGGGAAGAAAGCATCCCTGCAGGGGT i dasNov3.JH580157 C 0 I 399 e micMur3.chr8 2661651 1049 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e canFam3.chr17 2050340 1972 + 64289059 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I a score=1108427.000000 s hg38.chr2_KI270769v1_alt 69162 123 + 120616 GTGCCGAGTCCCCAGCGGA--ATGTGCCAGCCACTTGAGTTCTGGAACA--CGGTGTAGCACTCCTTGGGGGAACCGGCGTCTGCACCAGCCCATGGTCGGGAGGCAGGGGAGGCCTCATGGCTGGG s panTro5.chr2A 3530949 123 + 111504155 GTGCCGAGTCCCCAGCGGA--ATGTGCCAGCCACTTGAGTTCTGGACCA--CGGTGTAGCACTCCTTGGGGGAACCAGCGTCTGCACCAGCCCATGGCCGGGAGGCAGGGGAGGCCTCATGGCTGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3391702 123 + 114371477 GTGCCGAGTCCCCAGCGGA--ATGTGCCAGCCACTTGAGTTCTGGACCA--CGGTGTAGCACTCCTTGGGGGAACCAGCGTCTGCACCAGCCCATGGCCGGGAGGCAGGGGAGGCCTCATGGCTGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 269542 123 + 637652 GTGCCGAGTCCCCAGCAGA--ATGTGCCAGCCACTTGAGTTCTGGACCA--CGGTGTAGCACTCCTTGGGGGAACCGGCGTCTGCACCAGCCCATGGCCAGGAGGCAGGGGAGGCCTCATGGCTGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3065483 123 + 81552678 GTGCCGAGTCCCCAGCGGA--ATGTGCCAGCCACTTGAGTTCTGGACCA--GGGTGTTGCACTCCTTGGTGGAACTGGCGTCTGCACCAGTCCATGGCCGGGAGGCAGGGGAGGCCCAGTGGCTGGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3328984 123 + 108979918 GTGCCAAGTCCCTAGCGAA--ATGTGCCAGCCACTTGAGTTCTGGACCA--GGGTGTGGCACTCCTTGGGGGAACTGGCATCTGCACCAGCCCATGGCCGGGAGGCAGGGGAGGCCTTGTGGCTGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040122 123 - 111193037 GTGCCAAGTCCCTAGCGAA--ATGTGCCAGCCACTTGAGTTCTGGACCA--GGGTGTGGCACTCCTTGGGGGAACTGGCATCTGCACCAGCTCATGGCCGGGAGGCAGGGGAGGCCTTGTGGCTGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3432786 123 + 3644372 GTGCCAAGTCCCCAGCGAA--ATGTGCCAGCCACTTGAGTTCTGGACCA--GGGTGTGGCACTCCTTGGGGGAACTGGCATCTGCACCAGCCCATGGCCGGGAGGCAGGGGAGGCCTTGTGGCTGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388000 123 - 10304083 GTGCCAAGTCCCCAGCGAA--ATGTGCCAGCCACTTGAGTTCTGGACCA--GGGTGTGGCACTCCTCGGGGGAACTGGCACCTGCACCAGCCCATGGCCGGGAGGCAGGGGAGGCCTTGTGGCTGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3483887 123 - 107702431 GTGCCAAGTCCCCAGAGAA--ATGTGCCAGCCACTTGAGTTCTAGACCA--GGGTGTGGCACTCCTTGGAGGAACTGGCACCTGCACCAGCCCATGGCCGGGAGGCAGGGGAGGCCTTGTGGCTGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1020905 123 + 1565135 GTGCCAAGTCCCCAGAGAA--ATGTGCCAGCCACTTGAGTTCTGGACCA--GGGTGTGGCACTCCTCGGGAGAACTGGCACCTGCACCAGCCCATGGCCGGGAGGCAGGGGAGGCCTTGTGGCTGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3385433 123 - 13651311 GTGCCAAGTCCCCAGCGAA--ACGTGCCAGCCACTTGAGTTCTGGACCA--GGGCGTGGCACTCCTTGGGGGAACTGGCATCTGCAGCAGCCCATGGCCGGGAGGCAGGGGAGGCCTTGTGGCTGGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3473991 116 - 108792865 GTGCCGAGTCCCCAGAGGAGTGTGTGCCAGCCACTTGAGTTCTGGGCCA--GGGCGTGGCACTCCGTGG-GGAATCAGCACCTG--------CATGGCCTGGAGGCAGGGGAAGCCTTGTGGCTGGC i calJac3.chr14 C 0 I 4 s saiBol1.JH378218 3121642 118 - 7082604 GTGCGGAGTCCCCAGGGGAGTGTGTGCCAGCCACTTGAGTTCTGGGCCAGGGGGCGTGGCACCCCTTGG-GGAATCAGCATCTG--------CATGGCCCGGAGGCAGGGGAAGCCTTGTGGCTGGC i saiBol1.JH378218 C 0 I 4 s cebCap1.NW_016107454v1 607210 116 + 5243153 GTGCTGAGTCCCCAAGGGAGTGTGTGCCAGCCACTTGAGTTCTGGGCCA--GGGCGTGGCACTCTTTGG-GGAATCAGCATCTG--------CATGGCCTGGAGGCAGGGGAAGCCTTGCAACTGGC i cebCap1.NW_016107454v1 C 0 I 4 s aotNan1.NW_018509326v1 3350949 116 + 7587287 ATGCCGAGTCCCCAGGGGAGTGTGTGCCAGCCACTTGAGTTCTGGGCCG--GGGTGTGGCACTCCTTGA-GGAATCAGCATCTG--------CATGGCCTGGAGGCAGGGGAAGCCTTGTGGCTGGC i aotNan1.NW_018509326v1 C 0 I 24 s otoGar3.GL873658 2554865 71 + 5252280 gccCC----------------GTG---------CTTGAGTCTCACACCC--AGGCGTGGCACTCCTTG-------------------CAGCCAGTGGCAGGGAGG----------CCTGTGCCTGGG i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2661651 1049 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e canFam3.chr17 2050340 1972 + 64289059 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I e dasNov3.JH580157 586790 399 + 2232271 I a score=160023.000000 s hg38.chr2_KI270769v1_alt 69285 20 + 120616 CATGGGTGGGGCCCTCCGGG s panTro5.chr2A 3531072 20 + 111504155 CATGGGTGGGGCCCTCCAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3391825 20 + 114371477 CATGGGTGGGGCCCTCCAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 269665 20 + 637652 CATGGGTGGGGCTCTCCGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3065606 20 + 81552678 CATGGGTGGGGCCCTCCAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329107 19 + 108979918 CATGGGTAGGG-CCTCCGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040245 19 - 111193037 CATGGGTAGGG-CCTCCGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3432909 19 + 3644372 CATGGGTAGGG-CCTCCGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388123 19 - 10304083 CATGGGTAGGG-CCTCCGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484010 20 - 107702431 CACGGGTAGGGCCCTCCGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021028 19 + 1565135 CACGGGTAGGG-CCTCCAGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3385556 20 - 13651311 CACGGGTAGGGCCCTCCGGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474111 20 - 108792865 TATGGGTGGGGCCCTCTGGG i calJac3.chr14 I 4 C 0 s saiBol1.JH378218 3121764 20 - 7082604 CATGGGTGGGGCCCTCTGGG i saiBol1.JH378218 I 4 C 0 s cebCap1.NW_016107454v1 607330 20 + 5243153 CATGGGTGGGGCCCTCCGGG i cebCap1.NW_016107454v1 I 4 C 0 s otoGar3.GL873658 2554936 20 + 5252280 CACAAGTGCAGCCCAGTGGG i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2661651 1049 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e canFam3.chr17 2050340 1972 + 64289059 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I e dasNov3.JH580157 586790 399 + 2232271 I e aotNan1.NW_018509326v1 3351065 24 + 7587287 I a score=226345.000000 s hg38.chr2_KI270769v1_alt 69305 30 + 120616 TGG---CCTCCCAT-AGGTCA-------------------------------ACTG-----------CGAGAGGCT s panTro5.chr2A 3531092 30 + 111504155 TGG---CCTCCCCT-AGGTCA-------------------------------ACTG-----------CGAGAGGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3391845 30 + 114371477 TGG---CCTCCCCT-AGGTCA-------------------------------ACTG-----------CGAGAGGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 269685 30 + 637652 TGG---CCTCCCGT-AGGTCA-------------------------------ACTG-----------CGAGAGGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3065626 30 + 81552678 TGG---CCTCCCGT-AGTTCA-------------------------------ACTG-----------CGAGAGACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329126 30 + 108979918 TGG---CCTCCCAT-AGGTCA-------------------------------ACTG-----------TGAGAGGCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040264 30 - 111193037 TGG---CCTCCCAT-AGGTCA-------------------------------ACTG-----------TGAGAGGCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3432928 30 + 3644372 TGG---CCTCCCAT-AGGTCA-------------------------------ACTG-----------TGAGAGGCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388142 30 - 10304083 TGG---CCTCCCAT-AGGTCA-------------------------------ACTG-----------TGAGAGGCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484030 30 - 107702431 TGG---CCTCCCAT-AGGTCA-------------------------------ACTG-----------TGAGAGGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021047 30 + 1565135 TGG---CCTCCCAT-AGGTCA-------------------------------ACTG-----------TAAGAGGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3385576 30 - 13651311 TGG---CCTCCCAT-AGGTCA-------------------------------ACTG-----------TGAGAGGCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474131 72 - 108792865 TGG---CCTTTTAC-GGGGCACCCTCGAGAGGCTGGAGGCCACCCTTGAGAGGCTGGAGGCCACCCTCGAGAGGCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3121784 30 - 7082604 TAG---CCTCTCAC-GGGGCA-------------------------------GCTG-----------CAAGAGGCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 607350 30 + 5243153 TGG---CCTCTCAT-GAGGCA-------------------------------GCTG-----------CGAGAGGCT i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2554956 32 + 5252280 CAGTAACCTCTTA--GGGTCA-------------------------------GCTT-----------TAGGGGTCT i otoGar3.GL873658 C 0 I 1 s dasNov3.JH580157 587189 31 + 2232271 TTG---CCTCACTTGAGTTCA-------------------------------GCTT-----------TGAGCTTCT i dasNov3.JH580157 I 399 I 3 e micMur3.chr8 2661651 1049 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e canFam3.chr17 2050340 1972 + 64289059 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I e aotNan1.NW_018509326v1 3351065 24 + 7587287 I a score=998986.000000 s hg38.chr2_KI270769v1_alt 69335 100 + 120616 GGCGGCCACCCTGGCCAGT-GGCCCTCCCAGCC----------------------TTGTCG-AGCTGCAGGCAA-----TGTCGTCGTTTCTGTCAGCTTTGCTCCTTTTCTCAGGGTTCTGGCTTTGG s panTro5.chr2A 3531122 100 + 111504155 GGCGGCCACCCTGACCAGT-GGCCCTCCCGGCC----------------------TTGTCG-AGCTGCAGGCAA-----TGTCGTCATTTCTGTCAGCTTTTCTCCTTTTCTCAGAGTTCTGGCTTTGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3391875 100 + 114371477 GGCGGCCACCCTGGCCAGT-GGCCCTCCCGGCC----------------------TTGTCG-AGCTGCAGGCAA-----TGTCGTCATTTCTGTCAGCTTTTCTCCTTTTCTCAGAGTTCTGGCTTTGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 269715 97 + 637652 GGCGGCCACCCTGGCCAGT-GGCCCTCCCGGCC----------------------TTGTCG-AGCTGCAGGCAA-----TGTCG---TTTCTGTCAGCTTTGCTCCTTTTCTCAGGGTTCTGGCTTTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3065656 100 + 81552678 GGTGGCCACCCTGGCCAGT-GGCCCTCCCGGCC----------------------TTGTCG-AGCTGCAGGCAA-----TGTCGTCGTTTCTGTCAGCTTTGCTCCTTTTCTCAGGGTTCTGGCTTTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329156 100 + 108979918 GGCGGCCACCCTGGCCAGT-GGCCCTCCTGGCC----------------------TTGTCG-AGCTACAGACAA-----TGTCGTCATTTCTGTCAGCTCTGCTCCTTTTCTCAGGGTTCTGGCTGTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040294 100 - 111193037 GGCGGCCACCCTGGCCAGT-GGCCCTCCTGGCC----------------------TTGTCG-AGCTACAGACAA-----TGTCGTCATTTCTGTCAGCTCTGCTCCTTTTCTCAGGGTTCTGGCTGTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3432958 100 + 3644372 GGCGGCCACCCTGGCCAGT-GGCCCTCCTGGCC----------------------TTGTCG-AGCTACAGACAA-----TGTCGTCATTTCTGTCAGCTCTGCTCCTTTTCTCAGGGTTCTGGCTGTGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388172 100 - 10304083 GGCGGCCACCCTGGCCAGT-GGCCCTCCTGGCC----------------------TTGTCG-AGCTACAGACAA-----TGTCGTCGTTTCTGTCAGCTCTGCTCCTTTTCTCAGGGTTCTGGCTTTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484060 100 - 107702431 GGCGGCCACCCTGGCTAGT-GGCCCTCCTGGCC----------------------TTGTCG-AGCTACAGACAA-----TGTCGTCATTTCTGTCAGCTCTGCTTCTTTTCTCAGGGTTCTGGCTGTGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021077 100 + 1565135 GGCAGCCACCCTGGCCAGT-GGCCCTCCTGGCC----------------------TTGTCG-AGCTACAGACAA-----TGTCGTCGTTTCTGTCAGCTCCGCTCCTTTTCTCAGGGTTCTGGCTTTGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3385606 100 - 13651311 GGCAGCCACCCTGGCCAGT-GGCCCTCCTGGCC----------------------TTGTCG-AGCTACAGACAA-----TGTCGTCGTTTCTGTCAGCTTTGCTCCTTTTCTCAGGGTTCTGGCTGTGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474203 96 - 108792865 GGAGGCCACCCTGGCCAGT-GGCCCTCCTGGCC-----------------------TGTCA-AGCTACAGGCAG--------TGTCGTTTCTGTCAGCTTTGCTCCTTTTCTCAGGGTTCTGGCTTTGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3121814 96 - 7082604 GGCGGCCACTCTGGCCAGT-GGCCCTCCAGGCC-----------------------TGTCG-AGCCGTAGGCAG--------TGTCGTTTCTGTCAGCTTTGTTCCTTTTCTCAGGGTTCTGGCTTTGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 607380 99 + 5243153 GGCGGCTACCCTGGCCAGT-GGCCCTCCCGGCC-----------------------TGTCG-AGCTGCAGGCAG-----TGTTGTTGTTTCTGTCAGCTTTGCTCCTTTTCTCAGGGTTCTGGCTTTGG i cebCap1.NW_016107454v1 C 0 I 36 s aotNan1.NW_018509326v1 3351089 98 + 7587287 GGAGGCCACCCTGGCCAGT-GGCCCTCCC-GCC-----------------------TGTCG-AGCTGCAGGCAG-----TGTCATCGTTTCCTTCAGCTTTGCTCCTTTTCTCGGGGTTCTGGCTTTGG i aotNan1.NW_018509326v1 I 24 C 0 s otoGar3.GL873658 2554989 95 + 5252280 TGCAACTACCCC------C-AGCCTTGCCGGCT----------------------GATTCACAGCTGCAGGCAGA---TGGTGGCCGTTGATGTCAGATCCACTG-TTTTCTTAGGGTCCCAGCTTGC- i otoGar3.GL873658 I 1 C 0 s dasNov3.JH580157 587223 124 + 2232271 TTCAGCCACCCCAGTCGGTCTGCTTTCCCAACCAATTAACTTTTATACCATGAAATTACAT-GACTGCAAGCAGATGGTTATCATCATTTACACTGGTTTTGC----TTTCTTTGGGTTCTAACTTTAG i dasNov3.JH580157 I 3 C 0 e micMur3.chr8 2661651 1049 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e canFam3.chr17 2050340 1972 + 64289059 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I a score=145859.000000 s hg38.chr2_KI270769v1_alt 69435 17 + 120616 AAACGGGGCCCCCGGTC s panTro5.chr2A 3531222 17 + 111504155 AAACGGGGCCCCCGGTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3391975 17 + 114371477 AAACGGGGCCCCCGGTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 269812 17 + 637652 AAACGGGGCCCCCGGTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3065756 17 + 81552678 AAACGGGGCTCCCGGTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329256 17 + 108979918 AAACGGGGCTTCCGGTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040394 17 - 111193037 AAACGGGGCTTCCGGTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433058 17 + 3644372 AAACGGGGCTTCCGGTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388272 17 - 10304083 AAACGGGGCTTCCGGTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484160 17 - 107702431 AAACAGGGCTTCCGGTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021177 17 + 1565135 AAACGGGGCTTCCGGTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3385706 17 - 13651311 AAACGGGACTTCCGGTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474299 17 - 108792865 CCCCGGGGCTCCTCGTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3121910 17 - 7082604 CAGCGGGGCTCCTAGTC i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3351187 17 + 7587287 CAGCGGGGCTCCTGGTC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2555084 16 + 5252280 AAACATAG-TTCTGGTC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 587347 17 + 2232271 AAATGTGGCTCTTGGTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2661651 1049 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e canFam3.chr17 2050340 1972 + 64289059 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I e cebCap1.NW_016107454v1 607479 36 + 5243153 I a score=2097771.000000 s hg38.chr2_KI270769v1_alt 69452 206 + 120616 GGACCATTTGGCCTTGTGTCTGGGCTG-ATGCTGAGCAGCCACCCTCCTG-------------GTTC-TC-------------TGAT-GCCGAGGGTCTCTTCCCAAAGCCA---CCTCTGGT----CCCAATGCGAGTGCTGTATTTTCTG----CCTCA--GTGCAGC-CTGCAGCATATTCAGCATTCCAGGCC-GAAATCCAGTGG-TGTTAACAAGAGGGATCTTTTAAAGTTAAATTAGAATTCA s panTro5.chr2A 3531239 206 + 111504155 GGACCATTTGGCCTTGTGTCTGGGCTG-ATGCTGAGCAGCCACCCTCCTG-------------GTTC-TC-------------TGAT-ACCGAGGGTCTCTTCCCAAAGCCA---CCTCTGGT----CCCAATGCGAGTGCTGTATTTTCTG----CCTCA--GTGCAGC-CTGCAGCATATTCAGCATTTCAGGCC-GAAATCCAGTGG-TGTTAACAAGAGGGATCTTTTAAAGTTAAATTAGAATTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3391992 206 + 114371477 GGACCATTTGGCCTTGTGTCTGGGCTG-ATGCTGAGCAGCCACCCTCCTG-------------GTTC-TC-------------TGAT-GCCGAGGATCTCTTCCCAAAGCCA---CCTCTGGT----CCTAATGCGAGTGCTGTATTTTCTG----CCTCA--GTGCAGC-CTGCAGCATATTCAGCATTCCAGGCC-GAAATCCAGTGG-TGTTAACAAGAGGGATCTTTTAAAGTTAAATTAGAATTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 269829 206 + 637652 GGACCATTTGGCCTTGTGTCTGGGCTG-ATGCTGAGCAGCCACCCTCCTG-------------GTTC-TC-------------TGAT-GCCGAGGGTCTCTTCCCAAAGCCA---CCTCTGGT----CCCAATGCGAGTGCTGTATTTTCTG----CCTCA--GTGCAGC-CTGCAGCATATTCAGCATTCCAGGCC-GAAATCCAGTGG-TGTTAACAAGAGGGATCTTTTAAAGTTAAATTAGAATTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3065773 206 + 81552678 GGACCGTTTGGCCTTGTGTCTGGGCTG-ATGCTGAGCAGCCACCCTCCTG-------------GTTC-CC-------------TAAT-GCCGAGGGTCTCTTCCCAAAGCCA---CCTCCGGT----CCCAATGCGAGTGCTGTATTTTCTG----CCTCA--GTGCAGC-CTGCAGCATATTCAGCATTCCAGGCC-GAAATCCAGTGG-TGTTAACAAGAGGGATCTTTTAAAGTTAAATTAGAATTCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329273 208 + 108979918 AGACCGTTTGGCTTCGTGTCTGGGCTG-ATGCTGAGCAGCCGCCCTCCTG-------------GTTC-TC------------TTGAT-GCCGAGGGTCTCTTCCCAAAGACC---CCTCTGGT----CCCAGCGCGAGTGCTGTATTTTCTG----CCTCA--GTGCAGC-CTGCAGCATATTCAGCATTCCATGCC-GAAATCCAGTGGTTATTAGCAAGAGAGATCTTTTAAAGTTAAATTAGAATCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040411 208 - 111193037 AGACCGTTTGGCTTCGTGTCTGGGCTG-ATGCTGAGCAGCCGCCCTCCTG-------------GTTC-TC------------TTGAT-GCCGAGGGTCTCTTCCCAAAGACC---CCTCTGGT----CCCAGCGCGAGTGCTGTATTTTCTG----CCTCA--GTGCAGC-CTGCAGCATATTCAGCATTCCATGCC-GAAATCCAGTGGTTATTAGCAAGAGAGATCTTTTAAAGTTAAATTAGAATCCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433075 208 + 3644372 AGACCGTTTGGCTTCGTGTCTGGGCTG-ATGCTGAGCAGCCGCCCTCCTG-------------GTTC-TC------------TTGAT-GCCGAGGGTCTCTTCCCAAAGACA---CCTCTGGT----CCCAGCGCGAGTGCTGTATTTTCTG----CCTCA--GTGCAGC-CTGCAGCATATTCAGCATTCCATGCC-GAAATCCAGTGCTTATTAGCAAGAGAGATCTTTTAAAGTTAAATTAGAATCCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388289 207 - 10304083 AGACCGTTTGGCTTCGTGTCTGGGCTG-ATGCTGAGCAGCCGCCCTCCTG-------------GTTC-TC------------CTGAT-GCCGAGGGTCTCTTCCCAAAGACA---CCTCTGGT----CCCAGCACGAGTGCTGTATTTTCTG----CCTCA--GTGCAGC-CTGCAGCATATTCAGCATTCCATGCC-GAAATCCAGTGG-TATTAGCAAGAGGGATCTTTTAAAGTTAAATTAGAATCCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484177 207 - 107702431 AGACCGTTTGGCTTCATGTCTGGGCTG-ATGCTGAGCAGCCGCCCTCCTG-------------GTTC-TC------------TTGAT-GCTGAGGGTCTCTTCCCAAAGACA---CCTCTGGT----CCTAGCGCGAGTGCTGTATTTTCTG----CCTCA--GTGCAGC-CTGCAGCATATTCAGCATTCCATGCC-GAAATCCATTGG-TATTAGCAAGAGGGATCTTTTAAAGTTAAATTAGAATCCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021194 207 + 1565135 AGACCGTTTGGCTTCGTGTCTGGGCTG-ATGCTGAGCAGCCGCCCTCCTG-------------GTTC-TC------------CTGAT-GCCGAGGGTCTCTTCCCAAAGACA---CCTCTGGT----CCCAGCACGAGTGCTGTATTTTCTG----CCTCA--GTGCAGC-CTGCAGCATATTCAGCATTCCATGCC-GAAATCCAGTGG-TATTAGCAAGAGGGATCTTTTAAAGTTAAATTAGAATCCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3385723 207 - 13651311 AGACCGTGTGGCTTCGTGTCTGGGCTG-ATGCTGAGCAGCCGCCCTCCTG-------------GTTC-TC------------TTGAT-GCCGAGGGTCTCCTCCCAAAGACA---CCTCTGGT----CCCAGCGCGAGTGCTGAATTTTCTG----CCTCA--GCGCAGC-CTGCAGCATATTGAGCATTCCAGGCC-GAAATCCAATGG-TATTAGCAAGAGGGATCTTTTAAAGTTAAATTAGAATTCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474316 220 - 108792865 GGGCCATTTGGCCTTGTGTCTGGGCCA-GTGCTGACCAGCCACCGTCCTG-------------GGTC-TCAGTGCTGCCTCCTTGAT-GCCAAAGGTCTCTTCCCAAAGCCA---CCCCTGCT----CCCAATGCAAGTGCTGTGTTTTCTA----CCTCA--GCGCAAC-CTGCAGCGCATTCAACATTCCAGGCCAAAAATCCATTGG-CATTAACAATAGGGATCTTTTCAAGTTAAATCACAATTCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3121927 219 - 7082604 AGGCCGTTTGGCCTTGTGTCTGGGCCA-GTGCTGACCAGCCACCCTCCTG-------------GTTC-TCACTCCTGCCTCCTTGAT-GCCGAAGGTCTCTGCCCAAAGCCA---CCCCCGGT----CCCAATGCAGGTGCTGTGTTTTCCA----CCTCA--ATGTAGC-CTGCAGTGCATTCAACATTCCAGGCC-AAAATCCAGTGG-CATTAACAAGAGGGATCTTTTCAGGTTAAATCAGAATTCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 607515 218 + 5243153 GGGCCATTTGGACTTGTGTCTGGGCCA-GTGCTGACCAGCCACCGTCCTG-------------GTTC-TCACTGCTGCCTCCTTGAT-GCCGAAGGTCTCTTCCCAAAGCCA----CCCTGGT----CCCAATGCAAGGGCTGCATTTTCCA----CCTCA--GTGCAGC-CTGCAGCGAATTTAACATTCCAGGCC-AGAATCCAGTGG-CATTAACAAGAGGGATCTTTTCAGGTTAAATCAGAATTCA i cebCap1.NW_016107454v1 I 36 C 0 s aotNan1.NW_018509326v1 3351204 219 + 7587287 GGGCCTTTTGGCCTTGCGTCTGGGCCA-GTGCTGACCGGCGACCTTCCTG-------------GTTC-TCACTGCTGCCTCCTTGAT-GCCAAAGGTCACTTCCCAAAGCCA---CCCCTGGT----CCCAATGCAAGTGCTGTGTTTTCCG----CCTCA--GTGCAGC-CTGCGGCGCATTCAACATTCCAGGCC-AAAATCCAGTGG-CATTAACAAGAGGGATCTTTTCAAGTGAAATCAGAATTCA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2555100 216 + 5252280 GGATTGTCTGGTCTCATGTCAGGGCTG-AAGCAGAGCCGTTGCCCACCTGTCATTGCCAGACTGTTCATCATCCATGTTTGTCCGATCACACAGGAAGGCTCCCCAGGGCCAGCTCCTGTGGC----TCCAGCGAGGGTGCTAGGCTTGCTGCTGCCCCCG--GTG--GC-TCACAGCATCATGCACATCCCAGGCT-GAA--CCAGCGG-AGTTAGGGAGAGGGGCCCT--------------------- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 587364 221 + 2232271 GGATTATTTAATCTTTTGTCTGAACTGAATGCCGAGCAGTTGCCCTCCTG-------------CTTT-TTGTAGTTGCATCATTTAT-GCAGACATTCTATTCCTAGAACCA---ATTGCAGTCGTCCCTAGGAGAGGTGCTGTATTTTCTG----TCTCACGGTGCAGCTCGGCAGCACATTAAAAATTCTAGGCT-AAAACCCAGTGG-TGTTAACAAGAGGGATCTT------TTAAATCAGAATTCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2661651 1049 - 159902609 I e mm10.chr12 91425533 1810 - 120129022 I e canFam3.chr17 2050340 1972 + 64289059 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I a score=504436.000000 s hg38.chr2_KI270769v1_alt 69658 46 + 120616 CAGGACCCAGTAATTGAGGGCTAGAAAGAGCCTCGAATTTATTTGT s panTro5.chr2A 3531445 46 + 111504155 CAGGACCCAATAATTGATGGCTAGAAAGAGCCTCGAATTTATTTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392198 46 + 114371477 CAGGACCCAATAATTGATGGCTAGAAAGAGCCTCGAATTTATTTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270035 46 + 637652 CAGGACCCAATAATTGATGGCTAGAAAGAGCCTCGAATTTATTTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3065979 46 + 81552678 CAGGACCCAATAATTGATGGCTAGAAAGAGCCTGGAATTTATTTGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329481 46 + 108979918 CAGGACCCAATAATTGATGGCTAGAAAGAGCCTCAAATGTATTTGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040619 46 - 111193037 CAGGACCCAATAATTGATGGCTAGAAAGAGCCTCAAATGTATTTGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433283 46 + 3644372 CAGGACCCAATAATTGATGGCTAGAAAGAGCCTCAAATGTATTTGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388496 46 - 10304083 CAGGACCCAATAATTGATGGCTAGAAAAAGCCTCAAATGTATTTGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484384 46 - 107702431 CAGGACCCAATAATTGACGGCTAGAAAGAGCCTCAAATGTATTTGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021401 46 + 1565135 CAGGACCCAATAATTGATGGCTAGAAAAAACCTCAAATGTATTTGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3385930 46 - 13651311 CAGGACCAAATAACTGATGGCTAGAAAGAGCCTCGAATGTATTTGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474536 45 - 108792865 CAGGACCTGGTAATTGAT-GCTAGAAAGAGCCTCCAATTTATTTGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122146 46 - 7082604 CAGGACCTGGTAATTGATGGCTAGAAAGAGCCTCCAAGTTATTTGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 607733 46 + 5243153 CAGGACCTGGTAATTGATGGCTGGAAAGAGCCTCCAATTTATTTGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3351423 46 + 7587287 CAGGACCTGGGAATTGATGGCTAGAAAGAGCCTCCAATTTATTTGT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2555316 31 + 5252280 ----------GGGTGGGTGGC-----AGAGGCCCTCATTCCCTCGC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91427343 43 - 120129022 CAGAGTGTAGCAGTTGCCAGCTCGCAGGAG---CACACTTGCTTGT i mm10.chr12 I 1810 C 0 s canFam3.chr17 2052312 42 + 64289059 CAAGACC--ATGGCCGAGAGCCAGGATGTGCCTCCGACCTGCGC-- i canFam3.chr17 I 1972 C 0 s dasNov3.JH580157 587585 46 + 2232271 CAGGACCCAATAATTGATGGCTAGAAAGAACCTCTAATTTATTTGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2661651 1049 - 159902609 I e proCoq1.NW_012151163v1 973454 1114 + 1238772 I a score=16013.000000 s hg38.chr2_KI270769v1_alt 69704 1 + 120616 G s panTro5.chr2A 3531491 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392244 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270081 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3066025 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329527 1 + 108979918 G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040665 1 - 111193037 G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433329 1 + 3644372 G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388542 1 - 10304083 G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484430 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021447 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3385976 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474581 1 - 108792865 G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122192 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 607779 1 + 5243153 G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3351469 1 + 7587287 G i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2662700 1 - 159902609 G i micMur3.chr8 I 1049 C 0 s otoGar3.GL873658 2555347 1 + 5252280 A i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91427386 1 - 120129022 G i mm10.chr12 C 0 C 0 s canFam3.chr17 2052354 1 + 64289059 A i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 587631 1 + 2232271 G i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 973454 1114 + 1238772 I a score=2002755.000000 s hg38.chr2_KI270769v1_alt 69705 104 + 120616 --CACTTACAGGCTGCTCTTACCTTGTAGCCTCTATCCGGCTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA s panTro5.chr2A 3531492 104 + 111504155 --CACTCACAGGCTGCTCTTACCTTGTAGCCTCTGTCCGGCTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392245 104 + 114371477 --CACTCACAGGCTGCTCTTACCTTGTAGCCTCTGTCCGGCTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270082 104 + 637652 --CACTCACAGGCTGCTCTTACCTTGTAGCCTCTATCCGGCTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3066026 104 + 81552678 --CACTCACAGGCTGCTCTTACCTTGTAGCCTCTGTCCGGCTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329528 104 + 108979918 --CACTCACAGGCTGCTCTTACCTTGCAGCCTCTGTCCGGTTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040666 104 - 111193037 --CACTCACAGGCTGCTCTTACCTTGCAGCCTCTGTCCGGTTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433330 104 + 3644372 --CACTCACAGGCTGCTCTTACCTTGCAGCCTCTGTCCGGTTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388543 104 - 10304083 --CACTTACAGGCTGCTCTTACCTTGCAGCCTCTGTCCGGTTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484431 104 - 107702431 --CACTCACAGGCTGCTCTTACCTTGCAGCCTCTGTCCGGTTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021448 104 + 1565135 --CACTTACAGGCTGCTCTTACCTTGCAGCCTCTGTCCGGTTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3385977 104 - 13651311 --CACTCACAGGCTGCTCTTACCTTGCAGCCTCTGTCCGGTTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474582 104 - 108792865 --CACTCACAGGCTGCTCTTACCTTGCAGCCTCTATCCGGCTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122193 104 - 7082604 --CACTCACAGTCTGCTCTTACCTTGCAGCCTCTATTCGGCTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 607780 104 + 5243153 --CACTCACAGGCTGCTCTTACCTTGTAGCCTCTATCCGGCTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3351470 104 + 7587287 --CACTCACAGGCTGCTCTTCCCCTGCAGCCTCTATCCGGCTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2662701 104 - 159902609 --CACTCACAGGCCGCCCTTGCTTTGCAGCGTCTGTGCAGCTGTGGAGGTCGCGGCTGGGCCGGGTGACGTACTCCATGGCCAACTGCCTGCTCCTGATGAAGGTA i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 974568 104 + 1238772 --CACTCACAGGCTGCCCTTGCTTTGCAGCGTCCGTCCAGCTGTGGAGGTCGCGGCTGGGCCGGGTGACGTACTCCATGGCCAACTGTCTGCTGCTGATGAAGGTA i proCoq1.NW_012151163v1 I 1114 I 129 s otoGar3.GL873658 2555348 104 + 5252280 --CACTCAAGAGCTGCTCTTTCTTTGCAGCGTCTCTCCAGCTATGGCGGTCGCGTCTGGGCCGGGTGACATACTCCATGGCCAACTGTCTGCTCCTGATGAAGGTA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91427387 103 - 120129022 --CACACTCACGCCTCTCTCTCCC-GCAGCCTCTGTTCAGCTGTGGAGGTCTCGTCTGGGCCGTGTGCTGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGTA i mm10.chr12 C 0 C 0 s canFam3.chr17 2052355 103 + 64289059 --CGCTCACCA-CTGCCCCTCTCTTGCAGCCTCCATTCAGCTGTGGAGGTCCCGCCTGGGCCGGGTGATGTGCTCCATGGCAAACTGCCTGCTCCTGATGAAGGTA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 587632 106 + 2232271 CACATTCACAAGCTGCTCTTATTTTGCAGCCTCTATTCAGCTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCTATGGCAAACTGTCTGCTAATGATGAAGGTA i dasNov3.JH580157 C 0 C 0 a score=34899.000000 s hg38.chr2_KI270769v1_alt 69809 2 + 120616 CG s panTro5.chr2A 3531596 2 + 111504155 CG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392349 2 + 114371477 CG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270186 2 + 637652 CG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3066130 2 + 81552678 TG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329632 2 + 108979918 CG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040770 2 - 111193037 CG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433434 2 + 3644372 CG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388647 2 - 10304083 CG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484535 2 - 107702431 CG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021552 2 + 1565135 CG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3386081 2 - 13651311 CG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474686 2 - 108792865 TG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122297 2 - 7082604 CG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 607884 2 + 5243153 CG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3351574 2 + 7587287 CG i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2662805 2 - 159902609 CG i micMur3.chr8 C 0 I 249 s otoGar3.GL873658 2555452 2 + 5252280 CG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91427490 2 - 120129022 TG i mm10.chr12 C 0 C 0 s canFam3.chr17 2052458 2 + 64289059 CG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 587738 2 + 2232271 CG i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 974672 129 + 1238772 I a score=69227.000000 s hg38.chr2_KI270769v1_alt 69811 5 + 120616 TGGGT s panTro5.chr2A 3531598 5 + 111504155 TGGGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392351 5 + 114371477 TGGGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270188 5 + 637652 TGGGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3066132 5 + 81552678 TGGGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329634 5 + 108979918 TGGGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040772 5 - 111193037 TGGGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433436 5 + 3644372 TGGGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388649 5 - 10304083 TGGGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484537 5 - 107702431 TGGGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021554 5 + 1565135 TGGGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3386083 5 - 13651311 TGGGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474688 5 - 108792865 TGGGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122299 5 - 7082604 TGTGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 607886 5 + 5243153 TGGGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3351576 5 + 7587287 TGGGT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2555454 5 + 5252280 TGAGT i otoGar3.GL873658 C 0 I 51 s mm10.chr12 91427492 5 - 120129022 TGGGC i mm10.chr12 C 0 C 0 s canFam3.chr17 2052460 4 + 64289059 TGCG- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 587740 5 + 2232271 TGGGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2662807 249 - 159902609 I e proCoq1.NW_012151163v1 974672 129 + 1238772 I a score=821503.000000 s hg38.chr2_KI270769v1_alt 69816 83 + 120616 GGCCA----AGCAGGGCTGCCATGTGATCTGGAAGAGCG-GGGTCAG-TGGGAGCCGCGAGGGA--GCCGC-TGGTATAATAGATGCTGGCA s panTro5.chr2A 3531603 83 + 111504155 GGCCA----AGCAGGGCTGCCATGTGATCTGGAAAAGCG-GGGTCAG-TGGGAGCCGCGAGGGA--GCCGC-TGGTATAATAGATGCTGGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392356 83 + 114371477 GGCCA----AGCAGGGCTGCCATGTGATCTGGAAGAGCG-GGGTCAG-TGGGAGCCGCGAGGGA--GCCGC-TGGTATAATAGATGCTGGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270193 83 + 637652 GGCCA----AGCAGGGCTGCCATGTGATCTGGAAGAGCG-GGGTCAG-TGGGAACCGCGAGGGA--GCCGC-TGGTATAATAGATGCTGGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3066137 83 + 81552678 GGCCA----AGCAAGGCTGCCGTGTGATCTGGAAGAGGG-GGGTCAG-TGGGAGCCGCGAGGGA--GCCGC-TGGCATAATAGACGCTGGCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329639 84 + 108979918 GGCCG----AGCAGGGCCGCCATGGGATCTGGAAGAGGGTGTGTCAG-TGGGAGCCGTGAGGGA--GCCGC-TGGTATAATAGATGCTGGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040777 84 - 111193037 GGCCG----AGCAGGGCCGCCATGGGATCTGGAAGAGGGTGTGTCAG-TGGGAGCCGTGAGGGA--GCCGC-TGGTATAATAGATGCTGGCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433441 84 + 3644372 GGCCG----AGCAGGGCTGCCATGGGATCTGGAAGAGGGTGTGTCAG-TGGGAGCCGTGAGGGA--GCCGC-TGGTATAATAGATGCTGGCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388654 84 - 10304083 GGCCG----AGCAGGGCTGCCATGGGATCTGGAAGAGGGTGTGTCAG-TGGGAGCCGTGAGGGA--GCCGC-TGGTATAATAGATGCTGGCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484542 84 - 107702431 CGCCG----AGCAGGGCCGCCATGGGATCTGGAAGAGGGTGTGTCAG-TGGGAGCCGTGAGGGA--GCCGC-TGGTATAATAGATGCTGGCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021559 83 + 1565135 GGCCG----AGCAGGGCCGCCATGGGATCTGGAAGAGGGTGTGTCAG-TGGGAGCCGTGAGGGA--GCCGC-T-GTATAATAGATGCTGGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3386088 84 - 13651311 GGCCG----AGCAGGGCCGCCATGGGATCTGGAAGAGGGTGTGTCAG-TGGGAGCCGTGAGGGA--GCCGT-TGGTATAATAGATGCTGGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474693 82 - 108792865 GGCCG----AGCAGGGCTGCCATGTGGTCTGGAAGAG-G-GGGTCGG-AGGGAGCCTCGAGGGA--GCCGC-TGGTTTAATAGATGCTGGCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122304 83 - 7082604 GGCCG----AGCAGGGCTGCCATGTGGTCTGGAAGAGAG-GGGTCGG-AATGAGCCTCAGGGGA--GCCGC-TGGTATAATAGATGCTGGCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 607891 83 + 5243153 GGCCG----AGCAGGGCTGCCATGTGGTCTGGAAGAGGG-GGGTCGG-AGGGAGCCTCGAGGGA--GCCGC-TGGTATAATAGATGCTGGCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3351581 83 + 7587287 GGCTG----AGCAGGGCTGCCATGTGGTCTGGAAGAGGG-GGGTCGG-AGGGAGCCTCGAGGGA--GCCGC-TGGTGTAATAGACGCTGGCA i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91427497 85 - 120129022 GGCTG----AGCTGTAGAGCACCTTGTTCTAGCAGACA--GTGTCAGCTAGAGGCTGCAAGGAAGTGCTGCGTGTTCCAATAGGC-CTGACA i mm10.chr12 C 0 C 0 s canFam3.chr17 2052464 57 + 64289059 ---------------------------TCCTGAGGAGG--GTGTCAG-CAGAAGCTGCGGGGGC--CCGGC-TGGCAC-ACGGGTGCAGGA- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 587745 82 + 2232271 GGCAGTAACTGCAGAGCTACCGTATATTCTAGAGTAGG--ATGTCAG-TGAAAACTGCAAGGGA--ATTGC-TTGTACATTC----CTGATA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2662807 249 - 159902609 I e proCoq1.NW_012151163v1 974672 129 + 1238772 I e otoGar3.GL873658 2555459 51 + 5252280 I a score=666606.000000 s hg38.chr2_KI270769v1_alt 69899 82 + 120616 GGGACCGGCCG--------------------------TGCAGAG----AAGCCAGCTAAGT----ACT------GG----CTTAA--------CAGGGAGCCCAGTGA--------CACAT--TATGGGGCTATATGTACTTT-A s panTro5.chr2A 3531686 83 + 111504155 GGGACCGGCTG--------------------------TGCAGAG----AAGCCAGCTAAGT----ACT------GG----CTTAA--------CAGGGAGCCCAGTGA--------CACAT--TATGGGGCTATATTTACTTTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392439 83 + 114371477 GGGACCGGCCG--------------------------TGCAGAG----AAGCCAGCTAAGT----ACT------GG----CTTAA--------CAGGGAGCCCAGTGA--------CACAT--TATGGGGCTATATTTACTTTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270276 83 + 637652 GGGACCGGCCG--------------------------TGCAGAG----AAGCCAGCTAAGT----ACT------GG----CTTAA--------CAGGGAGCCCGGTGA--------CACAT--TATGGGGCTATATTTACTTTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3066220 83 + 81552678 GGAACAGGCCG--------------------------TGCAGAG----AAGCCAGCTAAGT----ACT------GG----CTTAA--------CGGGGAGCCCAGTGA--------CACAT--TCTGGGGCTATATTTACTTTAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329723 91 + 108979918 GGGACGGGCCGG-----------------TGTAGCCATG-AGAG----AAGCCAGCTAAGC----ACT------GG----CTTCA--------CAGGGAGCCCAGTGA--------CACAT--TACGGGGCTATATTTACTTTCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040861 91 - 111193037 GGGACGGGCCGG-----------------TGTAGCCATG-AGAG----AAGCCAGCTAAGC----ACT------GG----CTTCA--------CAGGGAGCCCAGTGA--------CACAT--TACGGGGCTATATTTACTTTCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433525 91 + 3644372 GGGACGGGCCGT-----------------TGTAGCCATG-AGAG----AAGCCAGCTAAGC----ACT------GG----CTTCA--------CAGGGAGCCCAGTGA--------CACAT--TACGGGGCTATATTTACTTTCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388738 91 - 10304083 GGGACGGGCCGG-----------------TGTAGCCGTG-AGAG----AAGCCAGCTAAGC----ACT------GG----CTTCA--------CAGGGAGCCCAGTGA--------CACAT--TACAGGGCTATATGTACTTTCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484626 91 - 107702431 GGGATGGGCCGG-----------------TGTAGCCGTG-AGAG----AAGCCAGCTAAGT----ACT------GG----CTTCA--------CAGGGAGCCCAGTGA--------CACAT--TACGGGGCTATATTTACTTTCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021642 91 + 1565135 GGGACGGGCCGG-----------------TGTAGCCGTG-AGAG----AAGCCAGCTAAGC----ACT------GG----CTTCA--------CAGGGAGCCCAGTGA--------AACAT--TACGGGGCTATATGTACTTTCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3386172 92 - 13651311 GGGACAGGCCGG-----------------TGTAGCCGTGCAGAG----AAGCCAGCTAAGT----ACT------GG----CTTCA--------CAGGGAGCCCAGTGA--------CACAT--TACGGGGCTGTATTTACTTTCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474775 93 - 108792865 GGGATGGGAAGT----------------GGGTAGCTGTGCAGAG----AAGCCAGCTAAGA----ACT------GG----CTTAA--------CAGGGAGCCCAGCGG--------CACAT--TCCGGGGCTAGATTTACTTTCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122387 90 - 7082604 GGGACAGGAAGC----------------AGGTAGCCGTGCAGAG----AAGCCAGCTAAGT----ACC------GG----CTTAA--------CAGGGAGCCCAGTGG--------CACAT--TCCGGGCTC---TTTACTTTCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 607974 92 + 5243153 GGGACGGGAAGC-----------------GGTTGCCGTGCAGAG----AAGCCAGCTAAGT----GCC------AG----CTTAA--------CAGGGAGCCCAGTGG--------CACAT--TCCGGGGCTATGTTTACTTTCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3351664 93 + 7587287 GGGACGGGAAGC----------------GGATAGCCGTGCAGAG----AAGCCAGCTCAGT----ACT------GG----CTTAA--------CAGGGAGCCCAGTGG--------CACAT--TCCTGGGCTGTATTTACTTTCA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2555510 70 + 5252280 -------------------------------------------G----GGCTCAGCCGTGTCCCAGCC------TG----CTTTG--------TGCAGAGCCCAGAAA--------TACGC--TCTAGAGCTAAATTTTCTTCCA i otoGar3.GL873658 I 51 C 0 s mm10.chr12 91427582 90 - 120129022 -----------------------------------------AGG----AAGTGAGCCGTGG----GCCTCAGCAGT----CTTCAGTGTGGCCTAGATTGCTCAGTAGAGTTCACTCACAC--TTGGGGGCCTAACTTGTCGTTG i mm10.chr12 C 0 C 0 s canFam3.chr17 2052521 67 + 64289059 -------------------------------------------G----TGCCCCGCGGTGG----GCG---GGAGG----CTTTACCGAG---CAGAGGGCTGCGTAC--------CACATCGTGCACGGCATTAG--------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 587827 117 + 2232271 AGAAAAAGCTCCCACAGTAAACATGAAAGTTTACCTAAGCAGAGAATTAATTCAACTAAGT----AAT------GGTTTATTTAA--------TAGATAGTTCAGTAA--------CACAC--TCTGGGGCTAAATTTACTTTAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2662807 249 - 159902609 I e proCoq1.NW_012151163v1 974672 129 + 1238772 I a score=1638478.000000 s hg38.chr2_KI270769v1_alt 69981 121 + 120616 TTTCTACTGCAAGAAATTTCAACAGAATGTAGAATTTAGATGATCAGATTTCATTATTGAAATGTGGGTCTAAATGATTTAATTAAAAGTATTGTTCATTTT------------------------------------------CCCC---------CAT----------TTTTCTCTGAAC s panTro5.chr2A 3531769 121 + 111504155 TTTCTACTGCAAGAAATTTCAACAGAATGTAGAATTTAGATGATCAGATTTCATTATTGAAATGTGGGTCTAAGTGATTTAATTAAAAGTATTGTTCATTTT------------------------------------------CCCC---------CGT----------TTTTCTCTGAAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392522 121 + 114371477 TTTCTACTGCAAGAAATTTCAACAGAATGTAGAATTTAGATGATCAGATTTCATTATTGAAATGTGGGTCTAAGTGATTTAATTAAAAGTATTGTTCATTTT------------------------------------------CCCC---------CGT----------TTTTCTCTGAAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270359 121 + 637652 TTTCTACTGCAAGAAATTTCAACAGAATGTAGAATTTAGATGATCAGATTTCATTATTGAAAAGTGGGTCTAAATGATTTAATTAGAAGTATTGTTCATTTT------------------------------------------CCCC---------CAT----------TTTTCTCTGAAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3066303 121 + 81552678 TTTCTACTGCAAGAAATTTCAACAGAATGTGGAATTTAGATGATCAGATTTCACCATTGAAATGTGGGTCTAAATGATTTAATTAAAACTATTGTTCATTTC------------------------------------------CCCC---------CAT----------TTTTCTCTGAAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329814 121 + 108979918 TTTCTACTGCAAGAAATTTCAACAGAATGTAGAATTTACATGATCAGATTTCATTATTGAAACGTGGGTCTAAATGATTTAATTTAAAGCGTTGTTCATTTT------------------------------------------CCCC---------CGT----------TTTTCTCTGAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5040952 121 - 111193037 TTTCTACTGCAAGAAATTTCAACAGAATGTAGAATTTACATGATCAGATTTCATTATTGAAACGTGGGTCTAAATGATTTAATTTAAAGCGTTGTTCATTTT------------------------------------------CCCC---------CGT----------TTTTCTCTGAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433616 121 + 3644372 TTTCTACTGCAAGAAATTTCAACAGAATGTAGAATTTACATGATCAGATTTCATTATTGAAACGTGGGTCTAAATGATTTAATTTAAAGCGTTGTTCATTTT------------------------------------------CCCC---------CGT----------TTTCCTCTGAAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388829 121 - 10304083 TTTCTACTGCAGGAGATTTCAACAGAATGTAGAATTTACATGATCAGATTTCATTATTGAAACGTGGGTCTAAATGATTTCATTATAAGCGTTGTTCATTTT------------------------------------------CCCC---------CGT----------TTTTCTCTGAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484717 121 - 107702431 TTTCTACTGCAGGAGATTTCAACAGAATGTAGAATTTACGTGATCAGATTTCATTATTGAAACGTGGGTCTAAATGATTTAATTTAAAGCGTTGTTCATTTT------------------------------------------CCCC---------CAT----------TTTTCTGTGAAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021733 121 + 1565135 TTTCTACTGCAGGAGATTTCAACAGAATGTAGAATTTACATGATCAGATTTCATTATTGAAACGTGGGTCTAAATGATTTCATTTAAAGCGTTGTTCATTTT------------------------------------------CCCC---------CGT----------TTTTCTCTGAAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3386264 119 - 13651311 TTTCTACTGCGAGAAATTTCAACAGAATGTAGAATTTACATGATCAGATTTCATTACTGAGACGTGGGTCTAAATGATTTCATTTAAAGCA-TGTTCATTTT------------------------------------------CCCC---------C-C----------TTTTCTCTGAAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474868 119 - 108792865 TTTCTACTGCAAGAAATTTCAACAGAAGGTAGAATTTACATGATCAGGTTTCATTATTGAAATGTGGGTCTAAATGATTTAATGAAAAGCATTGTTCATCTT------------------------------------------CCCC---------C------------TTTTCTCTGAAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122477 121 - 7082604 TTTCTACTGCAAGAAATTTCAACAGAAGGTAGAATTTACATGATCAGATTTCATTATTGAAACGTGGGTCTAAATGATTTAATGGAAAGCATTGTTCATCTT------------------------------------------CCCC---------CGT----------TTTTCTCTGAAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 608066 121 + 5243153 TTTCTACTGCAGGAAGTTTCAACAGAAGGTAGAATTTACATGATCAGATTTCATTATTGAAACGTGGGTCTAAATGATTTAATGAAAAGCATTGTCCATCTT------------------------------------------CCCC---------CGT----------TTTTCTCTGAAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3351757 121 + 7587287 TTTCTACTGCAAGAAATTTCAACAGAAGGTAGAATTTACATGATCAGATTTCATTATTGAAACGTGGGTCTAAATGATTTAATGAAAAGCATTGTTCATCTT------------------------------------------CCCC---------CGT----------TTTTCTCTGAAT i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 974801 116 + 1238772 TTTCTCCTGAAAGAAATTTCACCAGAATGTGGAATTTATATTATCAACTCTAATTGTTAAAACGTGGGTCTGAATCATTTAATTAAAATCATTGCT----TG------------------------------------------CCCC---------TGT----------TTT-CTCTGAAT i proCoq1.NW_012151163v1 I 129 C 0 s otoGar3.GL873658 2555580 117 + 5252280 TTTCTCCTGTAAGAAATTTCAACAGAATGTAGAATTTACATTATCAAATTTAATTGATTAAATGTGGGTCCAAGTGATTTAATTAAAATCATTGTT----TG------------------------------------------CCCC---------GGT----------TTTGCTCTGAAT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91427672 114 - 120129022 -----------TAAAATTTCCACAGAAAACAG--TTTATATTGCTGAATTTAATTGCACGGGCCTAGGTCTAAACAGTCTAATTAAAA---CTGCTCACTCC------------------------------------------GCCCGAAAATGGGCGT----------TTTCCTCTGAAC i mm10.chr12 C 0 C 0 s canFam3.chr17 2052588 130 + 64289059 TTTATACTGAAAGACATCTCAGCAGAATATACAGCTTACATTGTCAAGTTCAATTGTTCA-ACTTGGGTCTCGGTGATTTAATTAAAATCATCATTCATCCT------------------------------------------CCCT---------CGCTCTCGCATAGTTTCCTCTAGAT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 587944 163 + 2232271 TTTCTACTGAAAGAAATTTCAACCAAATGGAGAATTTATATTTTCAAATTTAATTGTTCAAACATGGGTCTAAATGATTTAATTAAAATCATTATTCATTCTCATGCAAATTCTCATTCTCTCTCTCTcacacacacacacacacaca---------caT----------TTTTCTTTGAAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2662807 249 - 159902609 I a score=762462.000000 s hg38.chr2_KI270769v1_alt 70102 52 + 120616 TCCATCCCCAGAAGGTGTCC-TTTGTTCTCCCTATCTTCGTG-GAGGGTG-TTTT s panTro5.chr2A 3531890 52 + 111504155 TCCATCCCCAGAAGGTGTCC-TTTGTTCTCCCTGTCTTCGTG-GAGGGTG-TTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392643 52 + 114371477 TCCATCCCCAGAAGGTGTCC-TTTGTTCTCCCTATCTTCGTG-GAGGGTG-TTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270480 52 + 637652 TCCATCCCCAGAAGGTGTCC-TTTGTTCTCCCTGTCTTCATG-GAGGGTG-TTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3066424 52 + 81552678 TCCATCCCCAGAAGGTGTCC-TTTGTTCTCCCTATCTTCATA-GAGGGTG-TTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329935 52 + 108979918 TCCATCCCCAGAAGGTGTCC-TTTGTTCTCCCTGTCTGCGTG-GAGGGTG-TTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5041073 52 - 111193037 TCCATCCCCAGAAGGTGTCC-TTTGTTCTCCCTGTCTGCGTG-GAGGGTG-TTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433737 52 + 3644372 TCCATCCCCAGAAGGTGTCC-TTTGTTCTCCCTGTCTGCGTG-GAGGGTG-TTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3388950 52 - 10304083 TCCATCCCCAGAAGGTGTCC-TTTGTTCTCCCTGTCTTCGTG-GAGGGTG-TTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484838 52 - 107702431 TCCATCCCCAGAAGGTGTCC-TTTGTTCTCCCTGTCTTCGTG-GAGGGTG-TTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021854 52 + 1565135 TCCATCCCCAGAAGGTGTCC-TTTGTTCTCCCTGTCTTCGTG-GAGGGTG-TTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3386383 53 - 13651311 TCCATCCCCAGAAGGTGTCC-TTTGTTCTCCCTGTCTTCCTG-GAGGTTGTTTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3474987 52 - 108792865 TCCATTCCCAAAAGGTGTCC-TTTGTTCTCCCTGTCTTCCTG-GAGGGTG-TTTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122598 51 - 7082604 TCCATCCCCAAAGGGTGTCC-TTTGTTCTCGCTGTCTTCCTG-GAGGATG--TTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 608187 43 + 5243153 TCCATCCCCAAAAGGTGTCC-TTTGTTCTC--------CCTG-GAGGGTG--TTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3351878 51 + 7587287 TCCATCCCCAAAAGGTGCTC-TTTGTTCTCCCTGTCTTCCTG-GAGGGTG--TTT i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2663056 52 - 159902609 TCCATCCCGAAGAGGTGTCC-TTTGTTCTCCCTGCCTTTGTG-GAGGGGG-TTTT i micMur3.chr8 I 249 I 3 s proCoq1.NW_012151163v1 974917 51 + 1238772 TGCATCCCGAGAAGGTGTCC--TTGTTCTCCCTGCCTTCGTG-GAGGGTG-TTTT i proCoq1.NW_012151163v1 C 0 I 14 s otoGar3.GL873658 2555697 52 + 5252280 TTCCTTCCAAAAAGGTGTCC-TTGGTTCTCCCTGTCTTTGTG-GAGGGCT-TTTT i otoGar3.GL873658 C 0 I 4 s mm10.chr12 91427786 53 - 120129022 TCCATCCAGAAAATCTCACC-TTTGTTCTGATTGTTTTACTGTGAGGGTC-ATTT i mm10.chr12 C 0 C 0 s canFam3.chr17 2052718 46 + 64289059 TCCATCCCAGAAAGGTGGCC--CTGCCCTCCCCGT-----GG-TAGGGGG-CTGT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 588107 53 + 2232271 TCCATCCTAGAAAGGTATCCTTTTGTTCTTGCTGGCTTAATG-GAGGGGT-TTTT i dasNov3.JH580157 C 0 C 0 a score=109927.000000 s hg38.chr2_KI270769v1_alt 70154 14 + 120616 TTT-CACCTCATGGT--- s panTro5.chr2A 3531942 15 + 111504155 TTTTCACCTCATGGT--- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392695 14 + 114371477 TTT-CACCTCATGGT--- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270532 14 + 637652 TTT-CACTTCTTGGT--- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3066476 14 + 81552678 TTT-CACCTCATGGT--- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3329987 14 + 108979918 TTT-CGCCTCTTGGT--- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5041125 14 - 111193037 TTT-CGCCTCTTGGT--- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433789 14 + 3644372 TTT-CGCCTCTTGGT--- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3389002 14 - 10304083 TTT-CGCCTCTTGGT--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484890 14 - 107702431 TTT-CGCCTCTTGGT--- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021906 14 + 1565135 TTT-CGCCTCTTGGT--- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3386436 14 - 13651311 TTT-CGCCTCTTGGT--- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3475039 14 - 108792865 TTT-CACCTCTTGGT--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122649 14 - 7082604 TTT-CACCCCTTGGT--- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 608230 14 + 5243153 TTT-CGCCTCTTGGT--- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3351929 14 + 7587287 TTT-CGCCTCTTGGT--- i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2663111 12 - 159902609 TTT-CATCTCAGG----- i micMur3.chr8 I 3 C 0 s otoGar3.GL873658 2555753 11 + 5252280 TTT-AATCTCAA------ i otoGar3.GL873658 I 4 C 0 s mm10.chr12 91427839 5 - 120129022 TTT-AA------------ i mm10.chr12 C 0 C 0 s canFam3.chr17 2052764 10 + 64289059 TTT-CCCTTGT------- i canFam3.chr17 C 0 I 5 s dasNov3.JH580157 588160 17 + 2232271 TTT-CCCCCTTTTCTTGA i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 974968 14 + 1238772 I a score=1852364.000000 s hg38.chr2_KI270769v1_alt 70168 132 + 120616 TTTGATTTTATGATTGATGCTTACAACACCTGAAGACAGGCTTCCCCAC------AAGA---CCTTCTT---AGGACGTCACCCCAGAGCTCTCAGCCCGC-AGGGAAACAGCTTAGAAATCAAGGA-GCTGAACTGAG--GCTGTCA s panTro5.chr2A 3531957 132 + 111504155 TTTGATTTTATGATTGATGCTTACAACACCTGAAGACAGGCTTCCCCAC------AAGG---CCTTCTT---AGGACGTCACCTCAGAGCTCTCAGCCCGC-AGGGAAACAGCTTAGAAATCAAGGA-GCTGAACTGAG--GCTGTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392709 132 + 114371477 TTTGATTTTATGATTGATGCTTACAACACCTGAAGACAGGCTTCCCCAC------AAGG---CCTTCTT---AGGACGTCACCTCAGAGCTCTCAGCCCGC-AGGGAAACAGCTTAGAAATCAAGGA-GCTGAACTGAG--GCTGTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270546 132 + 637652 TCTGATTTTATGATTGATGCTTACAACACCTGAAGACAGGCTTCCCCAC------AAGA---CCTTCTT---AGGACGTCACCCCAGAGCTCTCAGCCCGC-AGGGAAACAGCTTAGAAATCAAGGA-GCTGAACTGAG--GCTGTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3066490 132 + 81552678 TTTGATTTTATGATTGATGCTTACAACACCTGAAGACAGGCTTCCCCAC------AAGA---CCTTCTT---AGGGCGTCACCCCAGAGCTCTCAGCACCC-AGGGAAACAGCTCAGAAATCAAGGA-GCTGAACTGAG--GCTGTCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3330001 130 + 108979918 TTTGATTTTATGATTGATGCTCGCAACACCTGAAGACAAGCTTCCCCAC------AAGA---CCTTCCT---AGGACGTCA-CCCAGAGCTCTCAGCCCCC-AGGA-AACAGCTTAGAAATCAGGGA-GCTGAACTGAG--GCTGTCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5041139 130 - 111193037 TTTGATTTTATGATTGATGCTCGCAACACCTGAAGACAAGCTTCCCCAC------AAGA---CCTTCCT---AGGACGTCA-CCCAGAGCTCTCAGCCCCC-AGGA-AACAGCTTAGAAATCAGGGA-GCTGAACTGAG--GCTGTCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433803 130 + 3644372 TTTGATTTTATGATTGATGCTCGCAACACCTGAAGACAAGCTTCCCCAC------AAGA---CCTTCCT---AGGACGTCA-TCCAGAGCTCTCAGCCCCC-AGGA-AACAGCTTAGAAATCAGGGA-GCTGAACTGAG--GCTGTCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3389016 131 - 10304083 TTTGATTTTATGATTGATGCTCGCAACACCTGAAGACAAGCTTCCCCAC------AAGA---CCTTCTT---AGGACGTCACCCCAGAGCTCTCAGCCCCC-AGGG-AACAGCTTAGAAATCAGGGA-GCTGAACTGAG--GTTGTCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3484904 132 - 107702431 TTTGATTTTATGATTGATGCTCGCAACACCTGAAGACAAGCTTCCCCAC------AAGA---CTTTCTT---AGGACGTCACCCCAGAGCTCTCAGCCCCC-AGGGAAACAGCTTAGAAATCAGGGA-GCTGAACTGAG--GCTGTCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1021920 131 + 1565135 TTTGATTTTATGATTGATGCTCGCAACACCTGAAGACAAGCTTCCCCAC------AAGA---CCTTCTT---AGGACGTCACCCCAGGGCTCTCAGCCCCC-AGGG-AACAGCTTAGAAATCAGGGA-GCTGAACTGAG--GCTGCCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3386450 132 - 13651311 TTTGATTTTGTGATTGATGCTCGCAACACCTGAAGACAAGCTTCCCCAC------AAGA---CCTTCTT---AGGACGTCACCCCAGAGCTCTCAGCCCCC-AGGGAAACAGCTTAGAAATCAGGGA-GCTGAACTGAG--GCTGTCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3475053 133 - 108792865 TTTGATTTTATGATTGATGATCACAACACCTGAAGAC--GCTTTCCAAT------AAGACCCCCTGCTT---AGGACGTCACCCCAGAGCTCTCAGCCCCC-AGGGAAACAGCTTAGAAATCAAGGA-GCTGAACTGAG--GCTGTCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122663 134 - 7082604 TTTGATTTTATGATTGATGATCATAACACCTGAAGACAGGCTTTCCCAT------GAGA-TCCCTGCTT---AGGACGTCACCCCAGAGCTCTTAGCCCCC-AGGGAAACAGCTGAGAACTCAAGGA-GCTGAACTCAG--ACTGTCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 608244 135 + 5243153 GTTGATTTTATGATTGATGATCACAACACCTGAACACAGGCTTTCCCAC------AAGACCCCCTGCTT---AGGACATCACCCCAGAGCTCTCAGCCCCC-AGGGAAACAGCTTAGAAATCAAGGA-GCTGAACTGAG--GCTGTCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3351943 133 + 7587287 TTTGATTTTATGATTGATGATAACAACACCTGAAGACAGGCTTTCCCAC------AAGACCCCCTGCTT---GGGACGTCACCCCAGAGCTC--AGCCCCC-GGGGAAACAGCTTAGAAATCAAGGA-GCTGAACTGAG--ACTGTCA i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2663123 135 - 159902609 -TTGGTTTTATGATTGATGCTCGCAGCATCTGGAGACGGGCCTTCCCAC------AAGACCTGCTTCTT---AGGGCTTCACCCCAGAGCTTTCAGCCCCCGGAGGAAACAGCTTAAAAATCCAGGC-GCAGAACCGAG--GCTGTCA i micMur3.chr8 C 0 I 1005 s proCoq1.NW_012151163v1 974982 132 + 1238772 TTTGATTTTATGACTGATGCTCACA----TTGCAGGCAGGCTTTCCCAC------AAGACCTGCTTCTT---AGGACTTCACCCCAGAGCTTTCGGCCCCCTGAGGAAACAGCTTAAAAATCAAGGC-GCCGAACTGAG--GCTGTCA i proCoq1.NW_012151163v1 I 14 I 57 s otoGar3.GL873658 2555764 138 + 5252280 TTTGATTTTATGATTGATGCTTACGGCATCTGAAGACAGGCCTTCCTAC------AAGACCTACTTCTT---AGGACTTTGCCCCAGAGCTTTCAGACCCCCAGGGAAACAGCTCAGAAATCAAGGA-GCTGAAGCGAGACGTCGTCA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91427844 119 - 120129022 ----------TGATTGATGGATTTGACATCTGAAGGCAGTCTTTCCCAC------CAGA---CCCTCTTGTGAGGACCTCACCCC-GAGCTGT--GCACCT-GAGGAGCCAGTGT--GACTCGGGGA-GCTCTGCCG-G--GCTGTCA i mm10.chr12 C 0 I 4 s canFam3.chr17 2052779 127 + 64289059 CCAGACGTGCTGACCGATGCCC------CGTG-------GCTTCCCCACCCCCGTAAGACCTGCGTCTC---AGGGAAGCCACCCGCAGCCTTCTGCCCTG-GAGGGCGCAGCTCACACCCCAGGAG-GCTGACCTCAG--GC-GTTG i canFam3.chr17 I 5 I 4 s dasNov3.JH580157 588177 131 + 2232271 CTTGATTTTATGATTGATGCTAATGTCATCTAATGACAGAGTTCCCCAT------AAGACCTAGTTCTC---AGGACTTCACCCCGGCACTTT-----CCT-AAGAAAAGAGCTTAAAAATAAAGGAGGCTGAACTGAG--GGTGTCA i dasNov3.JH580157 C 0 I 5 a score=453181.000000 s hg38.chr2_KI270769v1_alt 70300 53 + 120616 TCTGT-TTTTCC-------GT---GTCTCC---TGG------CT-------CTCGCCAGCCTGTGCAA-------CGGTGTTTTTT-G--- s panTro5.chr2A 3532089 54 + 111504155 TCTGT-TTTTCC-------GT---GTCTCC---TGG------CT-------CTCGCCAGCCTGTGCAA-------CGGTGTTTTTTTG--- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392841 54 + 114371477 TCTGT-TTTTCC-------GT---GTCTCC---TGG------CT-------CTCGCCAGCCTGTGCAA-------CGGTGTTTTTTTG--- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270678 53 + 637652 TCTGT-TTTTCC-------GT---GTCTCC---TGG------CT-------CTCGCCAGCCTGTGCAA-------CGGTGTTTTTT-G--- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3066622 53 + 81552678 TTTGT-TTTTCC-------GT---GTCTCC---TGG------CT-------CTTGCCAGCCGGTGTAA-------CAGTGTTTTTT-G--- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3330131 53 + 108979918 GTTGT-TTTTCC-------GT---GTCTCC---TGG------CT-------CTCGCTAGCCTGTGCAA-------CGGTGTTTTTT-G--- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5041269 53 - 111193037 GTTGT-TTTTCC-------GT---GTCTCC---TGG------CT-------CTCGCTAGCCTGTGCAA-------CGGTGTTTTTT-G--- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433933 53 + 3644372 GTTGT-TTTTCC-------GT---GTCTCC---TGG------CT-------CTCGCTAGCCTGTGCAA-------CGGTGTTTTTT-G--- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3389147 53 - 10304083 TTGGT-TTTTCC-------GT---GTCTCC---GGG------CT-------CTCGCTAGCCTGTGCAA-------CGGTGTTTTTT-G--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3485036 53 - 107702431 TTTGT-TTTTCC-------GT---GTCTCC---TGG------CT-------CTCGCTAGCCTGTGCAA-------CGGTGTTTTTT-G--- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1022051 53 + 1565135 TTGGT-TTTTCC-------GC---GTCTCC---GGG------CT-------CTCGCTAGCCTGTGCAA-------CGGTGTTTTTT-G--- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3386582 53 - 13651311 TTTGT-TTTTCC-------GT---GTCTCC---TGG------CT-------CTCGCTAGCCTGTGCAA-------CGGTGTGTTTT-G--- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3475186 52 - 108792865 TTTGT-TTTTCC-------GT---GTCTCC---TGG------CT-------CTTGCCAGCCTGTGCCA-------TGGTGTTTTT--G--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122797 52 - 7082604 TTTGT-TTTTCC-------AC---GTCTCC---TGG------CT-------CTCGCCAGCCTGTGCCA-------TGGTGTTTCT--G--- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 608379 50 + 5243153 TTTGT-TTTTCC-------GC---ATCTCC---TGG------CT-------C--ACCAGCCTGTGCCA-------CGGTGTTTTT--G--- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3352076 50 + 7587287 CTTGT-TTTTCC-------AT---GTCTCC---TGG------CT-------CTCGCCAGCCTGTGCCA---------GTGTTTTT--A--- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2555902 61 + 5252280 TCTGTGTTTGCA-------GT---GTGTTC---TCG------CTGGAGCAGCCCCCCAGCCCGAGCGG-------CAGCATGTTCC-G--- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91427967 48 - 120129022 CTGAA-TTTCCA-------GTCCATTCTCCACGTGG------GC-------CCTGCCAGC-----------------GGGTTTTCA----- i mm10.chr12 I 4 C 0 s canFam3.chr17 2052910 60 + 64289059 TTTGT-TTCCTC-------TA---GCCTGT---TCG-----TCT-------CACACAGGCCCTTGCAGCTGAGAGCAGTGTTGGCA----- i canFam3.chr17 I 4 C 0 s dasNov3.JH580157 588313 68 + 2232271 TTGGT-TTTTGCCAGTCTAGT---CTCTCC---CTGAGAAGTCC-------CTCCCCAGCTTCTGCAG-------CCAGGTTTTT--GCTG i dasNov3.JH580157 I 5 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e proCoq1.NW_012151163v1 975114 57 + 1238772 I a score=734297.000000 s hg38.chr2_KI270769v1_alt 70353 58 + 120616 GCTCCTCTCTTTGTTTGGAACGCA------CCCCACAC-CT-GGCTCACCTCCCACACTGGGCATC s panTro5.chr2A 3532143 58 + 111504155 GCTCCTCTCTTTGTTTGGAACGCA------CCCCACAC-CT-GGCTCACCTCCCACACTGGGCATC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392895 58 + 114371477 GCTCCTCTCTTTGTTTGGAACGCA------CCCCACAC-CT-GGCTCACCTCCCACACTGGGCATC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270731 58 + 637652 GCTCCTCTCTTTGTTTGGAACGTA------CCCCACAC-CT-GGCTCACCTCCCACACTGGGCATC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3066675 58 + 81552678 GCTCCTCTCTTTGTTTGGAACGCA------CCCCACAC-CT-GGCTCACCTCCCACACTGGGCGTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3330184 57 + 108979918 GCTCCTCTCTTTGTTTGGAATGCA-------CGCACGC-CT-GGCTCACCTCCCACACTGGGCGTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5041322 57 - 111193037 GCTCCTCTCTTTGTTTGGAATGCA-------CGCACGC-CT-GGCTCACCTCCCACACTGGGCGTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3433986 57 + 3644372 GCTCCTCTCTTTGTTTGGAATGCA-------CGCACGC-CT-GGCTCACCTCCCACACTGGGCGTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3389200 57 - 10304083 GCTCCTCTCTTTGTTTGGAATGCA-------CCCACGC-CT-GGCTCACCTCCCACACTGGGCGTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3485089 57 - 107702431 GCTCCTCTCTTTGTTTGGAATGCA-------CCCACGC-CT-GGCTCACCTCCCACACTGGGCGTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1022104 57 + 1565135 GCTCCTCTCTTTGTTTGGAATGCA-------CCCACGC-CT-GGCTCACCTCCCACACTGGGCGTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3386635 58 - 13651311 GCTCCTCTCTTTGTTTGGAATGCA------CCCCACGC-CT-GGCTCACCTCCCACACTGGGCGTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3475238 58 - 108792865 GCTCCTCTCTTTGTTTGGAACACA------CCCCATGC-CT-GGCTCACCTCCCACACTGGGCGTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122849 58 - 7082604 GCTCCTCTTTTTGTTTGGAACACA------CCCCATGC-CT-GGCTCATCTCCCACACTGGGCGTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 608429 58 + 5243153 GCTCCTCTCTTTGTTTGGAACACA------CCCCATGC-CT-GGCTCACCTCCCACACTGGGTGTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3352126 58 + 7587287 GCTCCTGTCTTTGTTTGGAACACA------CCCCATGC-CT-AGCTCACCTCCCACACTGGGCGTC i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 975171 57 + 1238772 GCTCCTCTCTTTGTCTGAGACGCG------CCC-GCGC-CT-GGCTCACCTCCCACCCTGGGCATC i proCoq1.NW_012151163v1 I 57 I 376 s otoGar3.GL873658 2555963 49 + 5252280 GCTTCTCTCTTTGTTTGAAAGGCG------CCCTGTGCGCA-GGCATGGCAGCCGC---------- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91428015 56 - 120129022 GCTTCTCTC-TCATTTCAAATACA------TCCCATGC-CT-GGCTTGCCTCCCGCCCTGGGCAC- i mm10.chr12 C 0 C 0 s canFam3.chr17 2052970 38 + 64289059 GCTCCTCCCTCTGATGGGAACCTG------CAGCACAG-CC-GCCT-------------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 588381 65 + 2232271 GCTTCTCTCTTTGTTTGAAAAGCTCTAGCCCCCCACAC-CTGGGCTCACCTCTGGCCCTGAGAACC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I a score=3896251.000000 s hg38.chr2_KI270769v1_alt 70411 381 + 120616 AGGGTGCCCTG-TGTGGAGCTAGTGTCCCTGCAGCCAGCT----GTGCGTACTGAGAG-------CTACTG-CAGGAATCAGCTAGCAGCAGGCG-CTCCGGAGCAGTGCTCGTAACAC-CTCCTGGGCTGTTCGAAGAC-AGCGACCTTAA---CTCCCACACCCATGCGGCTTTCATGGGG-CCAAGGTCATTCCTGAGCTTGATTTTCAGCAAGGCAG--AGCAGGCAATTTACCAG-CG--GAGAACTGTGCTCACGGGCTCTGTCATGAACCCTGAAGTGGCAGCCCTG----CTTTATGCACGGAC-----CCTGCAGCATCCCCA-GAGGTGACTGTGACCCCGGGCACTGCTCCGAGCAGGC---TGGGTGCGGGTATAGATTCACAGCCATCAGTGGCTCAGGCATTCCA s panTro5.chr2A 3532201 382 + 111504155 GGGGTGCCCTG-TGTGGAGCTAGTGGCCCCGCAGCCAGCT----GTGCGTACTGAGAG-------CTACTG-CAGGAATCGGCTAGCAGCAGTCG-CTCTGGAGCAGTGCTCGTAACAC-CTCCTGGGCTGTTCTAAGAC-AGCGATCATGA---CACCCACACCCATGCGGCTTTCATGTGG-CCAAGGTCATTCCTGAGCTTGATTTTCAGCAAGGCAG--AGCAGGCAATTTACCAGGCG--GAGAACTGTGCTCACGGGCTCCGTCATGAACCCCGAAGTGGCAGCCCTG----CTTTATGCACGGAC-----CCTGCAGTATCCCCA-GAGGTGACTGTGACCCCGGGCACTGCTCCGAGCAGGC---TGGGTGCGGGTATATATTCACAGCCATCAGTGGCTCAGGCATTCCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3392953 382 + 114371477 GGGGTGCCCTG-TGTGGAGCTAGTGGCCCCGCAGCCAGCT----GTGCGTACTGAGAG-------CTACTG-CAGGAATCGGCTAGCAGCAGTCG-CTCTGGAGCAGTGCTCCTAACAC-CTCCTGGGCTGTTCTAAGAC-AGCGATCATGA---CTCCCACACCCATGCGGCTTTCATGTGG-CCAAGGTCATTCCTGAGCTTGATTTTCAGCAAGGCAG--AGCAGGCAATTTACCAGGCG--GAGAACTGTGCTCACGGGCTCCGTCATGAACCCCGAAGTGGCAGCCCTG----CTTTATGCACGGAC-----CCTGCAGCATCCCCA-GAGGTGACTGTGACCCCGGGCACTGCTCCGAGCAGGC---TGGGTGCGGGTGTAGATTCACAGCCATCAGTGGCTCAGGCATTCCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 270789 382 + 637652 AGGGTGCCCTG-TGTGGAGCTAGTGGCCCTGCAACCAGCT----GTGTGTACTGAGAG-------CTACTG-CAGGAATCAGCTAGCAGCAGACG-CTCCGGAGCAGTGCTCGTAACAC-CTCCTGGGCTGTTCTAAGAC-AGCAATCATAA---CTCCCACACCCATGCGGCTTTCATGTGG-CCAAGGTCATTCCTGAGCTTGATTTTCAGCAAGGCAG--AGCAGGCAATTTACCAGGCG--GAGAACTGTGCTCACGGGCTCTGTCATGAACCCTGAAGTCGCAGCCCTG----CTTTATGCGCGGAC-----CCTGCAGCATCCCCA-GAGGTGACTGTGACCCCGGGCACTGCTCCGAGCAGGC---TGGGTGCGGGTATAGATTCACAGCCATCAGTGGCTCAGGCATTCCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3066733 382 + 81552678 AGGGTGCCCTG-TGTGGAGCTAGTGGCCCTGCAGCCAGCT----GTGCGTACTGAGAG-------CTGCTG-CAGGAATCAGCTAGCAGCAGACG-CCCCGAAGCAGTGCTTATAACAC-CTCCTGGGCTGTTCTAAGAC-AGCGATCTTAA---TTCCCACACCCATGCAGCTTTCATGCGG-CCGAGTTCATTCCTGAGCTTGATATTCAGCAAGGCAG--AGCAGGCAATTTACCAGGTG--GAGAACTGTGCTCACAGGCTCTGTCATGAACCCTGAAGTGGCAACCCTG----CTTTATCCACGGAC-----CCTGCAGCATCCCCA-GAGGTGACTGTGACCCCGAGCACTGCTCCGAGCAGGC---TGGGTGCGGGTGTAGATTCACAGCCATCAGTGGCTCAGACATTCCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3330241 383 + 108979918 GGGGTGCCC---TGTGGAGCTAGTGGCCCTGCAGCCAGCT----GTGCACGCTGAGAG-------CTGCTG-CAGGAATCAGCTAGCAGCAGAAG-CCCCGGAGCAGTGCTCACACCAC-CTCCTGGGCTGTTCTAAGAC-AGTGATCGTAACTCCTCCCACACCCATGCGGCTTTCATGTGG-CCAAGGTCGTTCCTGAGTTTGATTTTCAGCGAGGCAG--AGCAGACCGTTTACCAGGTG--GAGAACCGTGCTCGCAGGCTCCGTCATGAACCCTGAAGTGGCAGCCCTG----CTTTATGCACGGAC-----CCTGCAGCATCCCCA-GAGGCGACTGTGGCCGGGGGCACTGCTCCGAGCAGGC---TGGGTGTGGGTGTAGATTCACAAACATCAGCAGCTCAGGCACTCCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5041379 385 - 111193037 GGGGTGCCCTG-TGTGGAGCTAGTGGCCCTGCAGCCAGCT----GTGCACGCTGAGAG-------CTGCTG-CAGGAATCAGCTAGCAGCAGAAG-CCCCGGAGCAGTGCTCACACCAC-CTCCTGGGCTGTTCTAAGAC-AGTGATCGTAACTCCTCCCACACCCATGCGGCTTTCATGTGG-CCAAGGTCGTTCCTGAGTTTGATTTTCAGCGAGGCAG--AGCAGACAGTTTACCAGGTG--GAGAACCGTGCTCGCAGGCTCCGTCATGAACCCTGAAGTGGCAGCCCTG----CTTTATGCACGGAC-----CCTGCAGCATCCCCA-GAGGCGACTGTGGCCGGGGGCACTGCTCCGAGCAGGC---TGGGTGTGGGTGTAGATTCACAAACATCAGCAGCTCAGGCACTCCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434043 385 + 3644372 GGGGTGCCCTG-TGTGGAGCTAGTGGCCCTGCAGCCAGCT----GTGCACGCTGAGAG-------CTGCTG-CAGGAATCAGCTAGCAGCAGAAG-CCCCGGAGCAGTGCTCACACCAC-CTCCTGGGCTGTTCTAAGAC-AGTGATCGTAACTCCTCCCACACCCATGCGGCTTTCATGTGG-CCAAGGTCATTCCTGAGTTTGATTTTCAGCGAGGCAG--AGCAGACAGTTTACCAGGTG--GAGAACCGTGCTCGCAGGCTCCGTCATGAACCCTGAAGTGGCAGCCCTG----CTTTATGCACGGAC-----CCTGCAGCATCCCCA-GAGGCGACTGTGGCCGGGGGCACTGCTCCGAGCAGGC---TGGGAGTGGGTGTAGATTCACAAACATCAGCAGCTCAGGCACTCCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3389257 385 - 10304083 GGGGTGCCCTG-TGTGGAGCTAGTGGCCCTGCAGCCAGCT----GTGCATACTGAGAG-------CTGCTG-CAGGAATCAGCTAGCAGCAGGAG-CCCCGGAGCAGTGCTCACACCAC-CTCCTGGGCTGTTCTAAGAC-AGTGATCATAACTCCTCCCACACCCATGCGGCTTTCGTGTGG-CCAAGGTCGTTCCTGAGTTTGATTTTCAGCAAGGCAG--AGCAGACAGTTTACCAGGTG--GAGAACCGTGCTCGCAGGCTCTGTCATGAACCCTGAAGTGCCAGCCCTG----CTTTATGCAGGGAC-----CCTGCAGCATGCCCA-GAGGTGACTGTGGCCGGGGGCACTGCTCCGAGCAGGC---TGGGTGTGGGTGTAGATTCACAAACATCAGCAGCTCAGGCACTCCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3485146 385 - 107702431 GGGGTGCCCTG-TGTGGAGCTAATGGCCCTGCAGCCAGCT----GTGCATACTGAGAG-------CTCCTG-CAGGAATCAGCCAGCAGCAGAAG-CCCCGAAGCAGTGCTCACACCAC-CTCCTGGGCTGTTCTGAGAC-AGTGATCGTAACTCCTCCCACACCCATGCGGCTTTCATGTGG-CCAAGGTCGTTCCTGAGTTTGATTTTCAGCAAGGCAG--AGCAGACAGTTTACCAGGTG--GAGAACTGTGCTCACAGGCTCTGTCGTGAACCCTGAAGTGGCAGCCCTG----CTTTCTGCAGGGAC-----CCTGCAGCATCCCCA-GAGGTGACTGTGGCCGGGGGCACTGCTCCGAGCAGGC---TGGGTGTGGGTGTAGATTCACAAACATCAGCAGCTCAGGCACTCTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1022161 385 + 1565135 GGGGTGCCCTG-TGTGGAGCTGGTGGCCCTGCAGCCAGCT----GTGCATACTGAGAG-------CTGCTG-CAGGAATCAGCTAGCAGCAGAAG-CCCCAGAGCAGTGCTCACACCAC-CTCCTGGGCTGTTCTAAGAC-AGTGATCGTAACTCCTCCCACACCCATGCGGCTTTCGTGTGG-CCAAGGTCGTTCCTGAGTTTGATTTTCAGCAAGGCAG--AGCAGACAGTTTACCAGGTG--GAGAACTGTGCTCGCAGGCTCTGTCATGAACCCTGAAGTGGCAGCCCTG----CTTTATGCAGGGAC-----CCTGCAGCATCCCCA-GAGGCGACTGTGGCCGGGGGCACTGCTCCGAGCAGGC---TGGGTGTGGGTGTAGATTCACAAACATCAGCAGCTCAGGCACTCCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3386693 385 - 13651311 AGGGTGCCCTG-TGTGGAGCTAGTGGCCCTGCAGCCAGCT----GTGCATACTGAGAG-------CTGCTG-CAGGAATCAGCTAGCAGCAGAAG-CCCCGGAACAGTGCTCATAACAC-CTCCGGGGCTGTTCTAAGAC-AGCGATCGTAACTCCTCCCACGCCCACGCGGCTTTCCTGTGG-CCAAGGTCATTCCTGAGTTTGATTTTCAGCAAGGCAG--AGCAGACAGTTTACCAGGTG--GAGAACTGTGCTCACAGGCTCTGTCATGAACCCTGAAGTGGCAGCCCTG----CTTGATGCACGGAC-----CCTGCAGCATCCCCA-GAGGTGACTGTGGCCCGGGGCACTGCTCCGAGCAGGC---TGGGTATGGGTGTAGATTCACAACCGTCAGCAGCTCAGGCATTCCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3475296 381 - 108792865 AGGGTGCCATG-AG-GGAGCTGGTGGCCCTGCAGCCAGCT----GTGAGCCCTGGGAG-------TGGCTG-CAAGAATCAGC-AGCAGCAGAT--CCCCAGAGCAGCACTCATAACAC----CTGGGCGGTTCTAAGAC-AGAGGTCATAACTCCTCCCACACCCACATGGCTTTCCTGCAG-CCGAGGTCATTCCCGAGCTTGATTTTCAGAAAGGCGG--AGCAGGCAGTTTACCAGGTGGAGAGAACTGTGCTCACGGGCTCTGTCACGAACCCTAAAGTCACAGCCCTG----CTTTATGCACAGAC-----CCCACAGCATCCTCA-GAGGTCACTGTGACCCCGGGCACTGCTTCAAGCGGGC---CAGGTGTGGGTACAGATTCACAGCCATCAGCAGCTCAGGCATTCCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3122907 384 - 7082604 AGGGTGCTGTG-TG-GGAGCTGGTGGCCCTGCAGCCAGCT----GTGGGCCCTGGGAG-------TGGCTG-CAAGAATCAGTGAACAGCAGGTG-CCTCGGAGCAGTACTCATACCAC-CTTCTGGGCTGTTCTAAGAC-AGTGATCATAGCTCCTCCCACACCCACATGGCTTTCCTGCAG-CCAAGGTCATTCCTGAGCTTGATTTTCAGAAAGGCAG--AGCAGGCAATTTACCAGGTG--GAGAACTGTGCTCATGGGCTCGGTCATGAACCCTCAAGTGGCAGCCCTG----CTTTATGCCCAGAC-----CCCACGGCATCCTCA-GAGGTCACTGTGACCCTGGGCACTGCTTCAAGCGGGC---TGGGTGTGGGTGTAGATTCACAGCCATCAGCAGCTCAGGCATTCCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 608487 384 + 5243153 AGGGTGCTATG-TG-GGAGCTGGTAGCCCTGCAGCCAGCT----GTGGGCCCTGGGAA-------GGGCTG-CAGGGATCAGTCAGCAGCAGGTG-GCCCGGAGCAGCACTCATAACAC-CTTTTGGGCTGTTCTAAGAC-AGCGATCATAACTCCTCCCACACCCACGTGGCTTTCCTGCAG-CCAAGGTCATTCCTGAGCTTGATTTTCAGAAAGGCGG--AGCAGGCAATTTACCAGGTG--GAGAACTGTGCTCACGGGCTCTGTCATGAGTCCTGAAGTGGCAGCCCTG----CTTTATGCATAGAC-----CCCACAGCATCCTCA-GAGGTCACTGTGACCCCGGGCACTGCTTCGAGCGGGC---TGAGTGTGGGTGTAGATTCACAACCATCAGCAGTTCAGGCATTCCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3352184 384 + 7587287 AGGGTGCTGTG-TG-GGAGCTGGTGGCCCTGCAGCCAGCT----GTGGGCCCTGGGAG-------TGGCTG-CAAGAATCAGTCAGCAGCAGGTG-CCCTGGAGCAGCACTCATAACAC-CTTCTGGGCTGTTCTAAGAC-AGCGATCATTACTCCTCCCACACCCACACAGCTTTCCTGCAG-CCAAGGTCATTCCTGAGCTTGATTTTCAGAAAGGCAG--AGCAGGCAATTGACCAGGTG--GAGAACTGTGCTCACGGGCTCTGTCATGAACCCTGAAGTGGCAGCCCTG----CTTTATGCACAGAC-----CCCACAGCATCCTCA-GAGGTCACTGTGACCCCGGGCACTGCTTCGAGTGGGC---TGGGTGCGGGTGTAGATGCACAACCATCAGCAGCTCAGGCATTCCA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2556012 293 + 5252280 ----------------TGGGTGGTGGCGCT-CGGCTGGCT----GCTGGCACTGAGAG-------CTGCTGTTTGGAATCAATTAGCAGCAGATGCCCCCAGAG----GCTCC--ACAT-CTTCTGGGCTGTTCTGAGAC-AG--ATCATAACTCCTCCCACAGCCA-----CTGTCGAGCTGCCCAAGGTCATTCCTGAGCTCAATG---AGCACAGCAG--AGCAGGCAATTCGCCAGGCT--GAGAGATGTGCTCCAGGGCTCAG----------------GTTAGCACTG----C---------------------AGAGCTGCCCTG-GAGGTGGCCATGGCCCT---------------CAGGC----AGGTGTGGGGGTGGATTCACA----------GCTAGGGCA----- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91428071 265 - 120129022 -GGGTGGCCTGCCACAGAGCTGGCGGCCTTGCTGCCAGCTGCAGGCAGGCACTGA-AG-------CCGCCA-C-GGAATCTGTCAGCAGCAGACG--CCCAGAGCAGCGCTGTTAACAC-CTTCCGAGCTGTGGTGAGAC-GGC--TCATCAGCTCATCCTCA-------------------G-CCAAGGTCGTCCT--GCTCTGACT----GAGCGGCCGCCAGCGGGCAGGTTACCAAGGG--GAAGAGCGTGCTC-----CTCGCTTTAGAGC----GACTGGCAGCCCTC----C-----------------------------------------ACGTGGCCAG-----CTCCTTGGACCTGG-------------------------------------------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2053008 299 + 64289059 --GGTGACCTG-CATGA----------CCTGCATCCCACT----GGTGGCGCTGCCAA--------AGCTG-CGGGGTTGGGGGGGGGGGGGCGG-ACGGGGCGAGCTGCCAGCCACAGACCTCTGGGCTGTCATGAGAC-CCAGACCCTGAGT-CCCCCACA-------------GGTCAGG-CCAAGGTCATTCCTGAGCTCGATCTTCAGCAAAGCCC--AGCAGGCAGTTCCTCGGGTG--GCGGA----GTCCAGCGGCT--------GGCCCTGGCGTGACAGCC-------------------AC-----CTTACA-CACCC----------------GCCCCTGGCAGCCCTGTGGGAGGGC---TGA------------ATTCTCAGC-----ACAGCCCGTGCACACTC i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 588446 402 + 2232271 CAGATGTCCTG-ATGCAGGCTGGTGGCCTGGCCGCCAGCT----GTGGGGACCAAAAGCCTCCTGCTGCTG-CAGGAATCAATTAGCAGCAAACG--CCCAGAGCAGCGCTCTTAGCAC-ATTCTTGGCTGGTATAAGACTGGAGATCATAACTCCTCCCACACTCC--CAGTTTTCAAGCTGCCCAAGGACATTGGTGAGCTTGATTTTCAGTACAGCAG--AACAGGCAATGTGCCAAGTG--GAAGAATCTGCTCCAAGGTTCCATTTTTAACCCTGACATGGCAGCCCTGGTCACTTTATGCATTGACCTGCTCCCTCGACAACCTGAGGAGATGATCACAGCCTT--GCAGGGGCCTCAGCAGGCAGTTAGGTATTGACATCCCGTCATAACCATAAACAGCTCATCCGATTCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e proCoq1.NW_012151163v1 975228 376 + 1238772 I a score=333983.000000 s hg38.chr2_KI270769v1_alt 70792 39 + 120616 TCAGGAAGACGTGCAGCCCGCACCCCGGCTTTAGCGCAG----- s panTro5.chr2A 3532583 39 + 111504155 TCAGGAAGACGTGCAGCCCGCACCCCGGCTTTAGCGCAG----- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393335 39 + 114371477 TCAGGAAGACGTGCAGCCCGCACCCCGGCTTTAGCGCAG----- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271171 39 + 637652 TCAGGAAGACGTGCAGCCTGCACCCCGGCTTTAGCGCAG----- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3067115 39 + 81552678 TCAGGAAGACGTGCAGCCCGCACTCCGGCTTTAGCGCAG----- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3330624 31 + 108979918 TCAGGAAGGTGTGCAGCACACACCCCGGCTT------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5041764 31 - 111193037 TCAGGAAGGTGTGCAGCACACACCCCGGCTT------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434428 31 + 3644372 TCAGGAAGGTGTGCAGCACACACCCCGGCTT------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3389642 31 - 10304083 TCAGGAAGGTGTGCAGCACACACCTCGGCTT------------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3485531 39 - 107702431 TCAGGAAGGTGTGCAGCACACACCCCGGCTTTAGTGCAG----- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1022546 31 + 1565135 TCAGGAAGGTGTGCAGCACACACCTCGGCTT------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387078 39 - 13651311 TCAGGAAGGTGTGCAGCACACACCCCGGCTTTAGTGCAG----- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3475677 32 - 108792865 TCAGGAAGACATGCAGCCCGCACCCCAGCTTT------------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3123291 32 - 7082604 TCAGGAAGACATGCAGCCCGCGCCCCAGCTTT------------ i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 608871 32 + 5243153 TCAGGAAGACATGCAGCCCGCACCCCAGCTTT------------ i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3352568 39 + 7587287 TCAGGAAGACGTGCAGCCCACACCCCAGCTTTAGTGCAG----- i aotNan1.NW_018509326v1 C 0 I 149 s proCoq1.NW_012151163v1 975604 39 + 1238772 TCAGGAAGGGGTGCAGCCTGCACCTCGGCTCTAGAGCAG----- i proCoq1.NW_012151163v1 I 376 C 0 s otoGar3.GL873658 2556305 36 + 5252280 ---GGAAGGTGTGCAGCCTGCCCCAGGGACCCCACCCAA----- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91428336 37 - 120129022 -CAGGAAAGTCTGTGAC-CACAGCCCAGCCATAGGACAG----- i mm10.chr12 C 0 C 0 s canFam3.chr17 2053308 37 + 64289059 GGAAGAGGACGGGCAGCCTGAACCT--GCTTCAGAGCAG----- i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 588848 43 + 2232271 -GTGGAAGAAAGCTAGGCTGAATCCAGGCCTCAAGAGAGGCCAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I a score=-20878.000000 s hg38.chr2_KI270769v1_alt 70831 13 + 120616 ---CCCCAGTGCCCAG-- s panTro5.chr2A 3532622 13 + 111504155 ---CCCCAGTGCCCGG-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393374 13 + 114371477 ---CCCCAGTGCCCGG-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271210 12 + 637652 ---CCCCAGT-CCCGG-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3067154 13 + 81552678 ---CCCCAGGGCCCAG-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3330655 10 + 108979918 ------TAGTGCCCAG-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5041795 10 - 111193037 ------TAGTGCCCAG-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434459 10 + 3644372 ------TAGTGCCCAG-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3389673 10 - 10304083 ------TAGTGCCCAG-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3485570 13 - 107702431 ---CCCTAGTGCCCAG-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1022577 10 + 1565135 ------TAGTGCCCAG-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387117 13 - 13651311 ---CCCTAGTGCCCAG-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3475709 2 - 108792865 --------------AG-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3123323 2 - 7082604 --------------AG-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 608903 2 + 5243153 --------------AG-- i cebCap1.NW_016107454v1 C 0 C 0 s proCoq1.NW_012151163v1 975643 13 + 1238772 ---TCCCAGGGCCCAG-- i proCoq1.NW_012151163v1 C 0 I 563 s otoGar3.GL873658 2556341 12 + 5252280 ---TCCCCACGCCTC--- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91428373 3 - 120129022 ---------TGT------ i mm10.chr12 C 0 C 0 s canFam3.chr17 2053345 9 + 64289059 -------TCTGCCCTG-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 588891 18 + 2232271 CTCTGCTGATGCACAGAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e aotNan1.NW_018509326v1 3352607 149 + 7587287 I a score=1939435.000000 s hg38.chr2_KI270769v1_alt 70844 233 + 120616 TGCGGGGCCGCTGCCTTTGCGCTTCTGCGTCTACGTCAG--GCTGGACGCACAAGGAGACTC--GGCG-------TCCTGTTCATCCTCGGTAGCAAG-------------CGACCGTGACGCAGC-CTCGcactactgcaagcctcagcctcctcctt-aaaataagggcatagatctgag--atctctgaaatccctcccagctctgacattcACACA---GCTCTCTCCT--CTCCTTCAACACACTGGATAAAGGAA-ATTAC s panTro5.chr2A 3532635 235 + 111504155 CGCGGGGCCGCTGCCTTTGCGCTTCTGCGTCTACGTCAG--GCTGGACGCACAAGGAGACTCAGGGTA-------TCCCGTTCGTCCTCGGTAGCAAG-------------CGACCGTGACGCAGC-CTCGcactactgcaagcctcagcctcctcctt-aaaataagggcatagatctgag--atctctgaaatccctcccagctctgacattcACACA---GCTCTCTCCT--CTCCTTCAACACACCGGATAAAGGAA-ATTAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393387 235 + 114371477 CGCGGGGCCGCTGCCTTTGCGCTTCTGCGTCTACGTCAG--GCTGGACGCACAAGGAGACTCAGGGTA-------TCCCGTTCGTCCTCGGTAGCAAG-------------CGACCGTGACGCAGC-CTCGcactactgcaagcctcagcctcctcctt-aaaataagggcatagatctgag--atctctgaaatccctcccagctctgacattcACACA---GCTCTCTCCT--CTCCTTCAACACACCGGATAAAGGAA-ATTAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271222 235 + 637652 CACGGGGCCACTGCCTTTGTGCTTCTGCGTCTACGTCAG--GCTGGACGCACAAGGAGACTCAGGGCA-------TCCCATTCGTCCTCGGTAGCAAG-------------CGACCGTGACGCAGC-CTCGcactactgcaagcctcagcctcctcctc-aaaataagggcatagatctgag--atctctgaaatccctcccagctctgacattcACACA---GCTCTCTCCT--CTCCTTCAACACACTGGATAAAGGAA-ATTAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3067167 235 + 81552678 CGCGGGGCCCCTGCCTTTGGGCTTCTGCATCTACGTCAG--ACTGGACACACGAGGAGACTCAGGGCA-------TCCTGCTTGTCCTCGGTATCAAG-------------TGACCGTGACGCAGC-CTCAcactgctgcaagcctcagcctcctcctt-aaaataagggcatagatctgag--atctctgaaatccctcccagctctgacattcACACA---GCTCTCTCCT--CTCCTTCAACACACTGGATAAAGGAG-ATCAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3330665 236 + 108979918 CGCAGGGCCCCTGCCTTTGAGTTTCTGCAGCTGCGTCGG--GCTGGACGCACAAGGAGACTCAGGGCA-------TCCTGTTCGTCCTCGGTAGCAAG-------------CACCCGTGACGCAGC-CTCGcactgctgcaagcctcagcgtcctccttcaaaataagggcgtagatctgag--atctctgaaattcttcccagctctgacattcACACA---GCTCTCTCCT--CTCCTTCAGCACACTGGATAAAGGAA-ATTAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5041805 236 - 111193037 CGCAGGGCCCCTGCCTTTGAGTTTCTGCAGCTGCGTCGG--GCTGGACGCACAAGGAGACTCAGGGCA-------TCCTGTTCGTCCTCGGTAGCAAG-------------CACCCGTGACGCAGC-CTCGcactgctgcaagcctcagcgtcctccttcaaaataagggcgtagatctgag--atctctgaaattcctcccagctctgacattcACACA---GCTCTCTCCT--CTCCTTCAGCACACTGGATAAAGGAA-ATTAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434469 236 + 3644372 CGCAGGGCCCCTGCCTTTGAGTTTCTGCAGCTGCGTCGG--GCTGGACGCACAAGGAGACTCGGGGCA-------TCCTGTTCGTCCTCGGTAGCAAG-------------CACCCGTGACGCAGC-CTCGcactgctgcaagcctcagcgtcctccttcaaaataagggcgtagatctgag--atctctgaaattcctcccagctctgacattcACACA---GCTCTCTCCT--CTCCTTCAGCACACTGGATAAAGGAA-ATTAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3389683 236 - 10304083 CGCAGGGCCCCTGCCTCTGGGTTTCTGCAGCTGCGTCGG--GCTGGACGCACAAGGAGACTCAGGGCA-------TCCTGTTCGTCCTCGGTAGCAAG-------------CACCCGTGATGCAGC-CTCGcactgctgcaagcctcagcgtcctccttcaaaataagggcgtagatctgag--atctctgaaattcctcccagctctgacattctCACA---GCTCTCTCCT--CTCCTTCAGCACACTGGATAAAGGAA-ATTAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3485583 236 - 107702431 CGCAGGGCCCCTGCCTTTGGGTTTCTGCGGCTGCGTCGA--GCTGGACGCACAAGGAGACTCAGGGCA-------TCCTGTTTGTCCTCGGTAGCAAG-------------CAACCGTGACGCAGC-CTCGcactgctgcaagcctcagcgtcctccttcaaaataagggcgtagatctgag--atctctgaaattcctcccagctctgacattcACACA---GCTCTCTCCT--CTCCTTCAGCACACTGGATAAAGGAA-ATTAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1022587 236 + 1565135 CGCAGGGCCCCTGCCTTTGGGTTTCTGCAGCTGCGTCGG--GCTGGACGCACAAGGAGACTCAGGGCA-------TCCTGTTCGTCCTCGGTAGCAAG-------------CACCCGTGACGCAGC-CTCGcactgctgcaagcctcagcgtcctccttcaaaataagggcgtagatctgag--atctctgaaattcctcccagctctgacattcACACA---GCTCTCTCCT--CTCCTTCAGCACACTGGATAAAGGAA-ATTAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387130 234 - 13651311 CGCAGGGCCCTTGCCTTTGGGTTTCTGCAGCTGCGTCGG--GCTGGACGCACAAGGAGACTCAGGGCA-------TCCTGTTCGTCCTCTGTAGCAAG-------------CAACCGTGACGCAGC-CTCGcactgctgcaagcctcagcgtcctccttaaaaataagggcgtagatctgag--atctctgaaattcctcccagctctgacattcACACA---G--CTCTCCT--CTCCTTCAGCACACTGGATAAAGGAA-ATTAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3475711 233 - 108792865 TGCAGGGCCAGTGCCTCTGCACCTCTGCAGCAGCATGGG--GCTGGATGCACAGGGAGACTCAGGACG-------TCCTGTTTGTCCTCAGTAACAAA-------------CGAC--TGACGCAGC-CTCAAactgctgcaagcctcagcctcctcctttaaaataagggcatagaactgag--atcgctgaaatcccttccagctctggtattcACACA---GCTCTTTCCC---TCCTTCAACACACTGGCTAAAGGAA-ATGAA i calJac3.chr14 C 0 I 3110 s saiBol1.JH378218 3123325 235 - 7082604 TGCAGGGCCACTGCCTCTACAGCTCTGCAGCAGCATGGG--GCTGGACGCACAGGGAGATTCAGGGTG-------TCCTGTTTGTCCTCAGTAGCAAG-------------CAACTGTGACGTAGC-CTTGcactgctgcaagcctcagccacctcctttaaaatataggcgttgaactgag--atcgctgaaatcccttccagctctggtattcACACA---GCTCTTTCCT---TCCTTCAACACACTGGATAAAGGAA-ATTAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 608905 235 + 5243153 TGCAGGGCCAGTGCCTCTGCAGCTCTGCAGCAGCATGGG--GCTGGACGCACAGGGAGACTCAGGGCG-------TCCTGTTTGTCCTCAGTAGCAAG-------------TGAGTGTGACGCAGC-CTCAcactgctgcaagccttagcctcctcctttaaaataagggcgtagaactgaa--atcgctgaaatcccttccagctctagcattcACACA---GCTCTTTCCT---TCCTTCAACACACTAGATAAAGGAA-ATTAT i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2556353 196 + 5252280 TGCAGG--------------------------ATGTGAT--GCTGGCCTC-TGGGGGACCATGGAACG-------TGCAGTCCATCCCCGCTAGCAAG-------------TGACCTTGATGCTGC-CACCCTCATCCACGAGCCTCAGCCTCCCCCTTTAGAATGAGGTTCTAGAGC--------CTGTGAAACGCCT-CCAGCTCTGACACCC---------CACTTTCCT--CTCTACCA-CACACTGAGCAAAAGAAGGGTAC i otoGar3.GL873658 C 0 I 1 s mm10.chr12 91428376 146 - 120129022 ---------GTTTCCTCTGCACCTCTGCAGACAGGT---------GACGT-----GTGACATTGGGTG-------T--AGACAGGCTCTTGTAGTAGG-------------TGACCTTGACACAGA----------------------------------AGAATGGG-----------------TTTCCTAAAACCTCTCCAGCT-----GTCCTCACA---GCTCTTTCCG--ACTCTTGAACACATTAC--------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2053354 162 + 64289059 -GCTGTGCCCATGGCTCC-----------------------------CATCCAGGTGGCTCCAG------------------------CAGAGGCGAG-------------ACACTGGGGCACAGT----------------GACTCTGCAGCGCCCTT-----------CATGTCCCCAAGCCGTGTTTGAAGCCCCT-CCGGCTCTGACATTCCTGCAAGCGCCCGCCCCC--CACCCCCAGCGCCCAGGGTGAGGG-------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 588909 244 + 2232271 TGCCATCCTGGTGTTCTCTGACTTGTATGTCTGCCTCAGTAGTAGCATGATCCTGGAAATGTGGACCAGGAATTTTCATATCCATTTTCCATAGCAAGAGCCTATAGCAAATGACCGGAAAGCAACCCTTTCACATTTAGAAG-------------CTTGAAAAGGAGAGAATAGAACTGAT-TTTTTTTGAAATCCCTCCCACCTC-----TTTATGCA---GCCCTTTCCTCTCTCTTTCAACACACTGAATAAAAGAA-AATAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e proCoq1.NW_012151163v1 975656 563 + 1238772 I e aotNan1.NW_018509326v1 3352607 149 + 7587287 I a score=686546.000000 s hg38.chr2_KI270769v1_alt 71077 80 + 120616 -GGTTTTC--AAG---TTCTGTGGTTTTGCTCAGAGCAGG-TTTTTCTTCCGCTGCCACTCCTGAGATAGTCCCACTGAGGTCAGG-T s panTro5.chr2A 3532870 80 + 111504155 -AGTTTTC--AAG---TTCTGTGGTTTTGCTCAGAGCAGG-TTTTTCTTCCGCTGCCACTCCTGAGATAGTCCCACTGAGGTCAGG-T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393622 80 + 114371477 -AGTTTTC--AAG---TTCTGTGGTTTTGCTCAGAGCAGG-TTTTTCTTCCGCTGCCACTCCTGAGATAGTCCCACTGAGGTCAGG-T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271457 80 + 637652 -GGTTTTC--AAG---TTCTGTGGTTTTGCTCAGAGCAGG-TTTTTCTTCCGTTGCCACTCCTGAGATAGTCCCACTGAGGTCAGG-T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3067402 78 + 81552678 -GGTTTTT--AAG---TTCCGTGGTTTTGCTCAGAGCA-G-TTTTTCTTCCGCTGCCACCCCTGAGACATTCCCACTGCAGTCA-G-T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3330901 80 + 108979918 -GGTTTTT--AAG---TTCTGTGGTTTTGCTCAGAGCAGG-TTTTTCTTCCGTTGCCACCCCTGAGATATTCCCACTGAGGTCAGG-T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5042041 80 - 111193037 -GGTTTTT--AAG---TTCTGTGGTTTTGCTCAGAGCAGG-TTTTTCTTCCGTTGCCACCCCTGAGATATTCCCACTGAGGTCAGG-T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434705 80 + 3644372 -GGTTTTT--AAG---TTCTGTGGTTTTGCTCAGAGCAGG-TTTTTCTTCCATTGCCACCCCTGAGATATTCCCACTGAGGTCAGG-T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3389919 80 - 10304083 -GGTTTTT--AAG---TTCTGTGGTTTTGCTCAGAGCAGG-TTTTTCTTCCGTTGCCACCCCTGAGATATTCCCACTGAGGTCAGG-T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3485819 80 - 107702431 -GGTTTTT--AAG---TTCTGTGGTTTTGCTCAGAGCAGG-TTTTTCTTTCGTTGCCACCCCTGAGATATTCCCACTGAGGTCAGG-T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1022823 80 + 1565135 -GGTTTTT--AAG---TTCTGTGGTTTTGCTCAGAGCAGG-TTTTTCTTCCGTTGCCACCCCTGAGATATTCCCACTGAGGTCAGG-T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387364 80 - 13651311 -GGTTTTT--AAG---TTCTGTGGTTTTGCTCGGAGCAGG-TTTTTCTTCCGTTGCCACCCCTGAGATATTCCCACTGAGGTCAGG-T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3479054 78 - 108792865 -GGTTTTT--AAG---TTCTCTGGTTTTACTCA-AGCAGG-TTTGACTTCTGTTGCCACCCCTGATATATTCCCACTGAGGTCAGG-- i calJac3.chr14 I 3110 C 0 s saiBol1.JH378218 3123560 79 - 7082604 -GGTTTTT--AAG---TTCTCTGGTTTTACTCAGAGCAGG-TTTGACTTCTGTTACCACCCCTGAGATATTCCCACTGAGGTCAGG-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 609140 80 + 5243153 -GGTTTTT--AAG---TTCTCTGGTTTTAGTCAGAGCAGG-TTTGACTTCTGTTGCCACCCCTGAGATATTCCCACTGAGGTCAGGT- i cebCap1.NW_016107454v1 C 0 I 62 s otoGar3.GL873658 2556550 76 + 5252280 -GGCTTTC----G---TTACGTGTCTTTGCTCAGAACAGGATTTTTCCTCTGTTGCCA---CGGAGACGTTGCTTTCAAGGCCAGT-T i otoGar3.GL873658 I 1 C 0 s mm10.chr12 91428522 43 - 120129022 -AGCTTTTAGAAG---TTCTGT-----------------G----------------------TGAGATATTTGCAC-ATGGTCTGT-T i mm10.chr12 C 0 C 0 s canFam3.chr17 2053516 68 + 64289059 -------C--AGT---GTGGGTGGAGGAGCTCAGAGCA-T-TCCGCCTTCTGTGTGCACAT---GGGTAGCTCTGACAGGGTGGC--- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 589153 83 + 2232271 GATTTTTT--AAGGAATTCTGTATTTTTGCTTAGAACTTT-TTTCTCTTCGGTC-TCAGGCCTGAGCTATTTCAGCTAAGGTCAGT-T i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e proCoq1.NW_012151163v1 975656 563 + 1238772 I e aotNan1.NW_018509326v1 3352607 149 + 7587287 I a score=206310.000000 s hg38.chr2_KI270769v1_alt 71157 31 + 120616 GGCCCGCACAGGTGCTTTGTTCTGGTCCTCA s panTro5.chr2A 3532950 31 + 111504155 GGCCCGCACAGGTGCTTTGTTCTGGTCCTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393702 31 + 114371477 GGCCCACACAGGTGCTTTGTTCTGGTCCTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271537 31 + 637652 GGCCTGCACAGGTGCTTTGTTCTGGTCCTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3067480 31 + 81552678 GGCCCGCACAGTCCCTTTGTTCTGGTCTTCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3330981 30 + 108979918 -GCCTGCACGGTCACTTTGTTCTGGTCCTCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5042121 30 - 111193037 -GCCTGCACGGTCACTTTGTTCTGGTcctca i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434785 30 + 3644372 -GCCTGCACGGTCACTTTGTTCTGGTCCTCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3389999 30 - 10304083 -GCCCGCACGGTCACTTTGTTCTAGTcctca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3485899 30 - 107702431 -GCCCGCATGGTCACTTTGTTCTGGTcctca i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1022903 30 + 1565135 -GCCCGCACGGTCACTTTGTTCTGGTCCTCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387444 30 - 13651311 -GCCCGCACGGTCACTTTGTTCTGGTcctca i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3479132 31 - 108792865 TGCCCGCACAGCCACTTGGTTCTAGTCCTTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3123639 31 - 7082604 GGCCTGCACAGCCACTTGGTTCTATTCCTTG i saiBol1.JH378218 C 0 I 273 s otoGar3.GL873658 2556626 28 + 5252280 -GCTTGCA--ATCACTGTGCCACTGTCCTTG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91428565 20 - 120129022 --GCCACAGGGCCACTTTGTTC--------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2053584 26 + 64289059 AGCCCATGCAGTGAC-----CACAGCGCTCG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 589236 24 + 2232271 -GCTCATGCAG------TGTGTTATACCTCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e proCoq1.NW_012151163v1 975656 563 + 1238772 I e cebCap1.NW_016107454v1 609220 62 + 5243153 I e aotNan1.NW_018509326v1 3352607 149 + 7587287 I a score=62519.000000 s hg38.chr2_KI270769v1_alt 71188 14 + 120616 ----------CCCTCCTCCCACCC- s panTro5.chr2A 3532981 14 + 111504155 ----------CCCTCCTCCCACCC- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393733 14 + 114371477 ----------CCCTCCTCCCACCC- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271568 14 + 637652 ----------CCCTCCTCCCACCC- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3067511 14 + 81552678 ----------CCCTCCTCCCCCCC- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3331011 14 + 108979918 ----------CCCTCCTCCCACCC- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5042151 14 - 111193037 ----------ccctcctcccaccc- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434815 14 + 3644372 ----------CCCTCCTCCCACCC- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3390029 14 - 10304083 ----------ccctcctcccaccc- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3485929 14 - 107702431 ----------ccctcctcccaccc- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1022933 14 + 1565135 ----------CCCTCCTCCCACCC- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387474 14 - 13651311 ----------ccctcctcccaccc- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3479163 13 - 108792865 -----------CCCCCTTTTGCCC- i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3123943 13 - 7082604 -----------cccttccctctcc- i saiBol1.JH378218 I 273 I 1 s otoGar3.GL873658 2556654 10 + 5252280 -----------CCTCCTCCCC---- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91428585 2 - 120129022 ------------CT----------- i mm10.chr12 C 0 I 1 s canFam3.chr17 2053610 13 + 64289059 ----------TGCTCCTGTACCC-- i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 589260 25 + 2232271 TCCTCCTCATCCTTTCTGCCTCCCC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e proCoq1.NW_012151163v1 975656 563 + 1238772 I e cebCap1.NW_016107454v1 609220 62 + 5243153 I e aotNan1.NW_018509326v1 3352607 149 + 7587287 I a score=-34995.000000 s hg38.chr2_KI270769v1_alt 71202 2 + 120616 G-C s panTro5.chr2A 3532995 2 + 111504155 G-C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393747 2 + 114371477 G-C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271582 2 + 637652 G-C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3067525 3 + 81552678 ACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3331025 3 + 108979918 GCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5042165 3 - 111193037 gcc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434829 3 + 3644372 GCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3390043 3 - 10304083 gcc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3485943 3 - 107702431 gcc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1022947 3 + 1565135 GCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387488 3 - 13651311 gcc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3479177 2 - 108792865 GC- i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3123957 2 - 7082604 gc- i saiBol1.JH378218 I 1 C 0 s cebCap1.NW_016107454v1 609282 2 + 5243153 GG- i cebCap1.NW_016107454v1 I 62 C 0 s mm10.chr12 91428588 1 - 120129022 G-- i mm10.chr12 I 1 C 0 s canFam3.chr17 2053624 1 + 64289059 A-- i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 589285 2 + 2232271 GT- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e proCoq1.NW_012151163v1 975656 563 + 1238772 I e otoGar3.GL873658 2556664 0 + 5252280 C e aotNan1.NW_018509326v1 3352607 149 + 7587287 I a score=277618.000000 s hg38.chr2_KI270769v1_alt 71204 37 + 120616 -CCCCTTCCCTTCTCCAGC-CCCCT-CTGGCTTC--TGCAGC s panTro5.chr2A 3532997 37 + 111504155 -CCCCTTCCCTTCTCCAGC-CCCCT-CTGGCTTC--TGCAGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393749 37 + 114371477 -CCCCTTCCCTTCTCCAGC-CCCCT-CTGGCTTC--TGCAGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271584 37 + 637652 -CCCCTTCCCTTTTCCAGC-CCCCT-CTGGCTTC--TGCAGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3067528 37 + 81552678 -CCCCTTCGCTTCTCCAGC-CCCCT-CTGGCTTC--TGCAGC i nomLeu3.chr19 C 0 I 125 s rheMac8.chr13 3331028 37 + 108979918 -CCCCTTCCCTTCTCCAGC-CCCCT-CTGGCTTC--TGCAGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5042168 37 - 111193037 -ccccttcccttctccagc-cccct-cTGGCTTC--TGCAGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434832 37 + 3644372 -CCCCTTCCCTTCTCCAGC-CCCCT-CTGGCTTC--TGCAGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3390046 37 - 10304083 -ccccttcccttctccagc-cccct-cTGGCCTC--TGCAGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3485946 37 - 107702431 -ccccttcccttctccagc-cccct-cTGGCTTC--TGCAGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1022950 37 + 1565135 -CCCCTTCCCTTCTCCAGC-CCCCT-CTGGCTTC--TGCAGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387491 37 - 13651311 -ccccttcccttctccagc-cccct-cTGGCTTC--TGCGGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3479179 22 - 108792865 --CCCCTTCCCTCTCCAGG-CCCCT----------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3123959 36 - 7082604 --ccccttccctctccAGC-ACCCT-CTGGCTTC--CACAGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 609284 36 + 5243153 --CCCCTTCCCTCTCCAGC-ACCCT-CTGGCTCC--TGCAGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3352756 36 + 7587287 --CCCCTTCCCTCTCCAGC-ACCCT-CTGGCTTC--TGCAGC i aotNan1.NW_018509326v1 I 149 C 0 s otoGar3.GL873658 2556664 12 + 5252280 ----------------------------GACTTC--TTCCAT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91428589 39 - 120129022 -TATCTTCCCACATCCACC-TCCCTGGTGACATCATTGCAG- i mm10.chr12 C 0 C 0 s canFam3.chr17 2053625 18 + 64289059 ----------GCCTTGAGC-CTGCC-CCGG------------ i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 589287 39 + 2232271 CTCCTCGCCCTCCCCCACCTCCCCT-CTTTGTGC--TGCAGC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e proCoq1.NW_012151163v1 975656 563 + 1238772 I a score=331068.000000 s hg38.chr2_KI270769v1_alt 71241 59 + 120616 AGGGCTTG-CCCACCTCT-GAGTGGGAGTGAAAAGTAGGCCCTCCTGCTCCCCTGCCCT------------------------GG s panTro5.chr2A 3533034 59 + 111504155 AGGGCCTG-CCCACCTCT-GAGTGGGAGTGAAAAGTAGGCCCTCCCGCTCCCCTGCCCT------------------------GG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393786 59 + 114371477 AGGGCCTG-CCCACCTCT-GAGTGGGAGTGAAAACTAGGCCCTCCCGCTCCCCTGCCCT------------------------GG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271621 60 + 637652 AGGGCTTGCCCCACCTCT-GAGTGGGAGTGAAAAGTAGGCCCTCCCGCTCCCCTGCCCT------------------------GG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3331065 83 + 108979918 AGGGCTTG-CCCACCTCC-GAGCGGGGGTGAAAAGTAGGCCCTCCCGCTCCCCTGCCCTGGGCCTCCGTGCTGGAAGGTGGGAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5042205 83 - 111193037 AGGGCTTG-CCCACCTCC-GAGCGGGGGTGAAAAGTAGGCCCTCCCGCTCCCCTGCCCTGGGCCTCCGTGCTGGAAGGTGGGAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434869 83 + 3644372 AGGGCTTG-CCCACCTCC-GAGCGGGGGTGAAAAGTAGGCCCTCCCGCTCCCCTGCCCTGGGCCTCTGTGCTGGAAGGTGGGAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3390083 81 - 10304083 AGGGCTTG-CCCACCTCT-GAGTGGGAGTGAAAAGTAGGCCCTCCCGCTCCCCTG--CTGGGCCTCTGTGCTGGAAGGTGGGAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3485983 83 - 107702431 AGGGCTTG-CCCACCTCC-GAGCGGGAGTGAAAAGTAGGCCTTCCCGCTCCCCTGCCCTGGGCCTCCGTGCTGGAAGGCGGGAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1022987 83 + 1565135 AGGGCTTG-CCCACCTCC-GAGCGGGGGTGAAAAGTAGGCCCTCCCGCTCCCCTGCCCTGGGCCTCCGTGCTGGAAGGCGGGAGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387528 83 - 13651311 AGGGCTTG-CCCACCCCC-GAGTGGGAGTGAAAAGCAGGCCCTCCCGCTCCCCTGCCCTGGGCCTCCGTGCTGGAAGGCGGGAGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3479201 19 - 108792865 ------------------------------------------GCCCACTCCCCTGCCCCGC------------------------ i calJac3.chr14 C 0 I 21 s saiBol1.JH378218 3123995 60 - 7082604 AGAGACTG-CCCACCTCTTGAGTGAGAGTGAAAAGTAGGCCCTTCCACTCCCCTGCCCCGG------------------------ i saiBol1.JH378218 C 0 I 30 s cebCap1.NW_016107454v1 609320 57 + 5243153 AGAGATTG-CCCACCTCT---GAGTGAGTGAAAAGTAGGCCCTCCCCCTCCCCTGCCCCAG------------------------ i cebCap1.NW_016107454v1 C 0 I 1 s aotNan1.NW_018509326v1 3352792 59 + 7587287 AGAGATTG-CCCACCTCT-GAGTGAGAGTGAAAAGTAGGCCCTCCCACTCCCCTGCCCCAG------------------------ i aotNan1.NW_018509326v1 C 0 I 21 s otoGar3.GL873658 2556676 55 + 5252280 GGGGCTGG-GC--CCTCT-GAG-GAGAGCTAGGAGCA-GCCCCCATGAGCCCATACTGGGG------------------------ i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91428628 33 - 120129022 -AGCCTCC-CCCACCTCC-CCATGGG------------------CTGCAGCCCT------------------------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2053643 24 + 64289059 -------G-CACGTGTGT-GGGCAGGAGGGCAG---------------------------------------------------- i canFam3.chr17 C 0 I 3 s dasNov3.JH580157 589326 59 + 2232271 AGGTCTTG-TCCACCTTG-AAGTAAAAGGGAGTAACAGGCCTGCATACTTCCTCTCTCCAG------------------------ i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e proCoq1.NW_012151163v1 975656 563 + 1238772 I e nomLeu3.chr19 3067565 125 + 81552678 I a score=10302.000000 s hg38.chr2_KI270769v1_alt 71300 10 + 120616 ------------------------TGGCCTCTTC s panTro5.chr2A 3533093 10 + 111504155 ------------------------TGGCCTCTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393845 10 + 114371477 ------------------------TGGCCTCTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271681 10 + 637652 ------------------------TGGCCTCTTC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3331148 9 + 108979918 ------------------------TGGCCTCTT- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5042288 9 - 111193037 ------------------------TGGCCTCTT- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434952 9 + 3644372 ------------------------TGGCCTCTT- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3390164 9 - 10304083 ------------------------TGGCCTCTT- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3486066 10 - 107702431 ------------------------TGGCCTCTTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1023070 9 + 1565135 ------------------------TGGCCTCTT- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387611 10 - 13651311 ------------------------TGGCCTCTTC i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 609378 9 + 5243153 ------------------------CGTCCGTGC- i cebCap1.NW_016107454v1 I 1 I 8 s otoGar3.GL873658 2556731 1 + 5252280 --------------------------------T- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2053670 7 + 64289059 ------------------------TGCCCTC--- i canFam3.chr17 I 3 C 0 s dasNov3.JH580157 589385 33 + 2232271 TGCAGCATTTGGGCCGGAGGGAGGTCACTTCTC- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e mm10.chr12 91428661 0 - 120129022 C e saiBol1.JH378218 3124055 30 - 7082604 I e proCoq1.NW_012151163v1 975656 563 + 1238772 I e aotNan1.NW_018509326v1 3352851 21 + 7587287 I e calJac3.chr14 3479220 21 - 108792865 I e nomLeu3.chr19 3067565 125 + 81552678 I a score=113052.000000 s hg38.chr2_KI270769v1_alt 71310 22 + 120616 ACCACCC------------AAGGCTTGGCCAGCA s panTro5.chr2A 3533103 22 + 111504155 ACCACCC------------AAGGCTTGGCCAGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393855 22 + 114371477 ACCACCC------------AAGGCTTGGCCAGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271691 22 + 637652 ACCACCC------------AAGGCTTGGCCAGCA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3331157 20 + 108979918 --CACCC------------AAGGCTGGGCCAGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5042297 20 - 111193037 --CACCC------------AAGGCTGGGCCAGCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434961 20 + 3644372 --CACCC------------AAGGCTGGGCCAGCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3390173 20 - 10304083 --CACCC------------AAGGCTGGGCCAGCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3486076 22 - 107702431 ACCACCC------------AGGGCTGGGCCAGCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1023079 20 + 1565135 --CACCC------------AAGGCTGGGCCAGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387621 22 - 13651311 ACCACCC------------GAGGCTGGGCCAGCA i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2556732 32 + 5252280 --CACACTGCGAGTAGGAGGAGGCTTCAGCAGTG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91428661 20 - 120129022 --CAGCC------------AAGGAGGGGCCTGCT i mm10.chr12 C 0 C 0 s canFam3.chr17 2053677 21 + 64289059 -ACCCCC------------ACGGCCCTGGCAGCA i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 589418 22 + 2232271 AGCAACT------------GAGTCTTTGGCGGTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e saiBol1.JH378218 3124055 30 - 7082604 I e proCoq1.NW_012151163v1 975656 563 + 1238772 I e cebCap1.NW_016107454v1 609387 8 + 5243153 I e aotNan1.NW_018509326v1 3352851 21 + 7587287 I e calJac3.chr14 3479220 21 - 108792865 I e nomLeu3.chr19 3067565 125 + 81552678 I a score=8285.000000 s hg38.chr2_KI270769v1_alt 71332 3 + 120616 -ACC s panTro5.chr2A 3533125 3 + 111504155 -ACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393877 3 + 114371477 -ACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271713 3 + 637652 -ACC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3331177 3 + 108979918 -ACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5042317 3 - 111193037 -ACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434981 3 + 3644372 -ACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3390193 3 - 10304083 -ACC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3486098 3 - 107702431 -ATC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1023099 3 + 1565135 -ACC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387643 3 - 13651311 -ACC i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 609395 3 + 5243153 -GCG i cebCap1.NW_016107454v1 I 8 C 0 s otoGar3.GL873658 2556764 3 + 5252280 -ACC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91428681 3 - 120129022 -TCC i mm10.chr12 C 0 C 0 s canFam3.chr17 2053699 2 + 64289059 -GC- i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 589440 3 + 2232271 AAC- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e saiBol1.JH378218 3124055 30 - 7082604 I e proCoq1.NW_012151163v1 975656 563 + 1238772 I e aotNan1.NW_018509326v1 3352851 21 + 7587287 I e calJac3.chr14 3479220 21 - 108792865 I e nomLeu3.chr19 3067565 125 + 81552678 I a score=314762.000000 s hg38.chr2_KI270769v1_alt 71335 37 + 120616 AGGTGAC----CCCGAAGCACCCGG--CCTGACCCCTCTGCCT-- s panTro5.chr2A 3533128 37 + 111504155 AGGTGAC----CCCGAAGCACCTGG--CCTGACCCCTCTGCCT-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393880 37 + 114371477 AGGTGAC----CCCGAAGCACCCGG--CCTGACCCCTCTGCCT-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271716 37 + 637652 AGGTGAC----CCCGAAGCACCCGG--CCTGACCCCTCTGCCT-- i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3331180 37 + 108979918 AGGTGAC----CCCGAAGCACCCGG--CCTGACCCCTCTACCC-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5042320 37 - 111193037 AGGTGAC----CCCGAAGCACCCGG--CCTGACCCCTCTACCC-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3434984 37 + 3644372 AGGTGAC----CCCGAAGCACCCGA--CCTGACCCCTCTACCC-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3390196 37 - 10304083 AGGTGAC----CCCGAAGCACCTGG--CCTGACCCCTCTACCC-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3486101 37 - 107702431 AGGTGAC----CCCGAAGCACCCGG--CCTGACCCCTCTACCC-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1023102 37 + 1565135 AGGTGAC----CCCGAAGCACCCGG--CCTGACCCCTCTACCC-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387646 37 - 13651311 AGGTGAC----CCCGAAGCACCCAG--CCTGACCCCTCTACCC-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3479241 37 - 108792865 AGGTGAC----CCTGAAGCACCCAG--CCTGACCCCTCTGCCC-- i calJac3.chr14 I 21 C 0 s saiBol1.JH378218 3124085 37 - 7082604 AGGTGAC----CCCAAAGCACCCAG--CCTGACCCCTCTGCCC-- i saiBol1.JH378218 I 30 C 0 s cebCap1.NW_016107454v1 609398 37 + 5243153 AGGTGAC----CCCGGAGCACCCAG--CCTGACCCCCCTGCCC-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3352872 37 + 7587287 AGGTGAC----CCCAAAGTACCCAG--CCTGACCCCTCTGCCC-- i aotNan1.NW_018509326v1 I 21 C 0 s otoGar3.GL873658 2556767 19 + 5252280 ----------------AGCTTCCAT-------CCCCTCTGCT--- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91428684 22 - 120129022 ------T----TCTGTCCCACC--------GCCCCCTGTG----- i mm10.chr12 C 0 C 0 s canFam3.chr17 2053701 38 + 64289059 AGGTCCT----TCCCTAGAGCCGGG-CCCTGTCCCCTCCTCCC-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 589443 43 + 2232271 --CTGCCCCTGCCCAACACACCGGGGTCCTTTGCTCTTTGCCCTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e proCoq1.NW_012151163v1 975656 563 + 1238772 I e nomLeu3.chr19 3067565 125 + 81552678 I a score=1066148.000000 s hg38.chr2_KI270769v1_alt 71372 110 + 120616 CCCAAAACAGGC------CATTCTC--CCTGTG--CTGCCTGTGGCCAGCCCTGACACCCCCACCTGGCGGTCT----GGGCGGTCCGCAGTAGGCCTCCACCTGCTGAGGGCATTGTCAGCGT s panTro5.chr2A 3533165 110 + 111504155 CCCAAAACAGGC------CATTCTC--CCTGTG--CTGCCTGTGGCCAGCCCTGACACCGCCACCTGGCAGTCT----GGGCGGTCCGCAGTAGGCCTCCACCCGCTGAGGGCGTTGTCAGCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3393917 110 + 114371477 CCCAAAACAGGC------CATTCTC--CCTGTG--CTGCCTGTGGCCAGCCCTGACACCGCCACCTGGCAGTCT----GGGCGGTCCGCAGTAGGCCTCCACCCGCTGAGGGCGTTGTCAGCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271753 110 + 637652 CCCAAAACAGGC------CATTCTC--CCTGTG--CTGCCCGTGGCCAGCCCTGACACCCCCACTTGGCAGTCT----GGGCGGTCCGCAGTAGGCCTCCACCCGCTGAGGGCATTGTCAGCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3067690 110 + 81552678 CCCAAAACAGGC------CATTCTC--CCTGTG--CTGCCTGTGGCCAGCCCTGACACCCCCACCTGGCAGTCT----GGGCGGTCCGCAGTAGGCCTCCACCTGCTGAGGGCATTGTCAGCTT i nomLeu3.chr19 I 125 C 0 s rheMac8.chr13 3331217 109 + 108979918 CTCAAAACAGGC------CATTCTC--CCAGTG--CTGCCTGTGGCTAGCCCTGACACC-CCACCTGGCAGTCT----GGGCGGTCCACAGTAGGCCTCTACCCGCTGAGAGTACTATCGGCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5042357 109 - 111193037 CTCAAAACAGGC------CATTCTC--CCAGTG--CTGCCTGTGGCCAGCCCTGACACC-CCACCTGGCAGTCT----GGGCGGTCCACAGTAGGCCTCTACCCGCTGAGAGTACTATCGGCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3435021 109 + 3644372 CTCAAAACAGGC------CATTCTC--CCAGTG--CTGCCTGTGGCTAGCCCTGACACC-CCACCTGGCAGTCT----GGGTGGTCCACAGTAGGCCTCTACCCGCTGAGAGTACTATCGGCTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3390233 109 - 10304083 CTCAAAACAGGC------CATTCTC--CCAGTG--CTGCCTGTGGCTAGCCCTGACACC-CCACCTGGCATTCT----GGGCAGTCCACAGTAGGCCTCCACCCGCTGAGAGTACTGTCGGCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3486138 109 - 107702431 CTGAAAACAGGC------CATTCTC--CCAGTG--CTGCCTGTGGCTAGCCCTGACACC-CCACCTGGCAGTCT----GGGCGGTCCACAGTAGGCCTCCACCCTCTGAGACGACTGTTGGCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1023139 108 + 1565135 CTCAAAACAGGC------CATTCTC--CCAGTG--CTGCCTGTGGCCAGCCCTGACACT-CCACCTGGCAGTCT----GGGCGG-CCACAGTAGGCCTCCACCCGCTGAGAGTACTGTCGGCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387683 92 - 13651311 CCCAAAATAGGC------CATTCTC--CCAGTG--CTGCCTGGGGCCAGCCCTGACACC-CCACCTGGCAG---------------------AGGTCTCCACCCGCTGAGAGTACTATCGGCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3479278 110 - 108792865 CCCAAAACAGGC------CATTCTC--CCATTG--CTGCCTATGGCCAGCCCTGACACCCCCACCTGGCAGCCT----GGGCGGTCTGCAGTAGGCCTCTGCCTGCTGAGGACACTGTCAGCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3124122 110 - 7082604 CCCAAAACAGGC------CAGTCTC--CCAGCG--CTGCCTGTGGCCAGCCCTGACACCCCCACCTGGCAGCCT----GGGCAGTCTGCAGTAGGCCTCTGCCTGCTGAGGACACTGTCAGCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 609435 116 + 5243153 CCCAAAACAGGCTGCCTGTGGTCTC--CCAGTG--CTGCCTGCGGCCAGCCCTGATACCCCCACCTGGCAGCCT----GGGCAGTCCGCAGTAGGTCTCTGCCTGCTGAGGACACTGTCAGCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3352909 110 + 7587287 CCCAAAACAGGC------CATTCTC--CCAGTG--CTGCCTGGGGCCAGCCCTGACACCCCCACCTGGCAGCCT----GGGTGGTCCGCAGTAGGCCTCTGCCTGCTGAGGACACTGTCAGCTT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2556786 105 + 5252280 -CCAGAGCAGGC------CATTCTC--CCTGCG--CCA-CTGTGGCCAACCCTGACACC-CCACCTACTGGCCC----GAGCAGTCCATGGT-GGCCTCCACCCTC-AAGGCTGCTGTCAGCTT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91428706 81 - 120129022 --------AGGC------CTGCCTC--TCCTCA--CTG-CTGTGGCCTG----------------TAGCAGCCT----GAGAAGGCACCGGGAGCCTCCAGTCTCCTGAAGTCTCTG--AGC-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2053739 66 + 64289059 --CTCCACAGGC------CACGCTC--CC------------------AGCTCTGGAAC--CCACAGGCCAGCCC----G-------------------CTGCC--CTGGGGCCACTG-CAGC-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 589486 110 + 2232271 CCAAAAACAGGC------CATTCTCTGCAAGTGCTCTGATTATAGCCCACAGGGAAATCTCCACCTCACAGTCTTTCAGGGTGTTTT--------CTCCAGCCCTCAAAGACTGTTTTCACTTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2663258 1005 - 159902609 I e proCoq1.NW_012151163v1 975656 563 + 1238772 I a score=8179129.000000 s hg38.chr2_KI270769v1_alt 71482 576 + 120616 CACCTGAAAGTCA-CCAGCTTGCCGGAACATTCTTATGCAAAGACATGAAGAATCAATTATAAATTCACAGGACTGACGTTTCACTAATCATGGGGCTAAAACTCCCCAGGGAGGAAAGTTCCCTGTTCCACTGGCGGGCTTTCA-TTTGCAT-T-TT-AAGACACATTAATAGAAAACGACGGAATGG-----GCTTTTCTTTGTGGCACTGTGGTAGTAACACCACCAC-----------CAGGCTCCGAATGTGAGTCTT---CTTCCTGTATTGCTGGGACTCAGTACAGAACATATTATTGCATTTCAAAAATACTTTTACAATGG-ACATGATTTAATTTGAAAGTTCAGCTTAAGCTTTCATTTTCATGAGTT---AAAAAAAG--GAGG-CAAAAATGTTGCAATTAAAGCCAAGCCAAGCATATGCA------CTCTCTTGCCATCTAGTGAGCATACAGGGTATTGCAACAGTGTGTGATCTTAATAAT-ATGGGGTATCCTGTTAATTAAATTATGTATATGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTTATTAC-AGTGAAATAAATACCAATTTAAC s panTro5.chr2A 3533275 575 + 111504155 CACCTGAAAGTCA-CCAGCTTGCTGGAACATTCTTATGCAAAGACATGAAGAACCAATTATAAATTCACAGGACTGACGTTTCACTAATCATGGGGCTAAAACTCCCCAGGGAGGAAAGTTCCCTGTTCCACTGGCGGGCTTTTA-TTTGCAT-T-TT-AAGACACATTAATAGAAAACGATGGAATGG-----GCTTTTCTTTGTGGCACTGTGGTAGTACCACCACCAC-----------CAGGCTCCGAATGTGAGTCTT---CTTCCTGTATTGCTGGGACTCAGTACAGAACATATTATTGCATTTCAAAAATACTTTTACAATGG-ACGTGATTTAATTTGAAAGTTCAGCTTAAGCTTTGATTTTCATGAGTT---AAAAAAAG--GAG--TAAAAATGTTGCAATTAAAGCCAAGCCAAGCGTATGCA------CTCTCTTGCCATCTAGTGAGCATACAGGGTATTGCAACAGTGTGTGATCTTAATAAT-ATGGGGTATCCTGTTAATTAAATTATGTGTATGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTTATTAC-AGTGAAATAAATATCAATTTAAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3394027 575 + 114371477 CACCTGAAAGTCA-CCAGCTTGCTGGAACATTCTTATGCAAAGACATGAAGAACCAATTATAAATTCACAGGACTGACGTTTCACTAATCATGGGGCTAAAACTCCCCAGGGAGGAAAGTTCCCTGTTCCACTGGCGGGCTTTTA-TTTGCAT-T-TT-AAGACACATTAATAGAGAACGATGGAATGG-----GCTTTTCTTTGTGGCACTGTGGTAGTACCACCACCAC-----------CAGGCTCCGAATGTGAGTCTT---CTTCCTGTATTGCTGGGACTCAGTACAGAACATATTATTGCATTTCAAAAATACTTTTACAATGG-ACGTGATTTAATTTGAAAGTTCAGCTTAAGCTTTCATTTTCATGAGTT---AAAAAAAG--GAG--TAAAAATGTTGCAATTAAAGCCAAGCCAAGCGTATGCA------CTCTCTTGCCATCTAGTGAGCATACAGGGTATTGCAACAGTGTGTGATCTTAATAAT-ATGGGGTATCCTGTTAATTAAATTATGTGTATGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTTATTAC-AGTGAAATAAATATCAATTTAAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 271863 576 + 637652 CACCTGAAAGTCA-CCAGCTTGCCGGAACATTCTTATGCAAAGACATGAAGAACCAATTATAAATTCACAGGGCTGACGTTTCACTAATCATGGGGCTAAAACTCCCCAGGGAGGAAAGTTCCCTGTTCCACTGGCGGGCTTTTA-TTTGCAT-T-TT-AAGACACATTAATAGAAAACGATGGAATGG-----GCTTTTCTTCGTGGCACTGTGGTAGTACCACCACCAC-----------CAGGCTCTGAATGTGAGTCTT---CTTCCTGTATTGCTAGGACTCAGTACAGAACATATTATTGCATTTCAAAAATACTTTTACAATGG-ACGTGATTTAATTTGAAAGTTCAGCTTAAGCTTTCATTTTCATGAGTT---AAAAAAAG--GAGT-AAAAAATGTTGCAATTAAAGCCAAGCCAAGCATATGCA------CTCTCTTGCCATCTAGTGAGCATGCAGGGTATTGCAACAGTGTGTGATCTTAATAAT-ATGGGGTATCCTGTTAATTAAATTATGTGTATGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTTATTAC-AGTGAAATAAATATCAATTTAAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3067800 575 + 81552678 CACCTGAAAGTCA-CCAGCTTGTCAGAACATTCTTATGCAAAGACATGAAGAATCAGTTATAAATTCACAGGACTGACGTTTCACTAATCATGGGGCTAAGACTCCCCAGGGAGGAAAGTTTCCTGTCCCACTGGCGGGCTTTTA-TTTGCAT-T-TT-CAGACACATTAATAGAAAACGATGGAATGG-----GCTTTTCTTTGTGGCACTGTAGTAGTAACACCACCAC-----------CAGGCTCCAAATGTGAGTCTT---CTTCCTGTATTGCTGGGACTCAGTACAGAACATATTATTGCATTTCAAAAATACTTTTACAATAG-ACGTGATTTAATTTGGAAGTTCAGCTTAAGCTTTCATTTTCATGAGTT---AAAAAAAG--GAGT-AAAAAATGTTGCAATTAAAGCCAGTCCAAGCATATGCA------CTCTCTTGCCATCTAGTGAGCATACAGGGTATTGCAACAGTGTGTGATCTTAAGACT-ATGAGGTATCCTGTTAATTAAATTATGTGTATGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACA-TTTTATTAC-AGTGAAATAAATATCAATTTAAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3331326 578 + 108979918 CACCTGAAAGTCA-CCAGCTTGCTGGAACATTCTTATGCAAAGACATGAAGAACCAATTATAAATTCACAGGACTGGTGTTTCACTAATCATGGGGCTAAAACTCCCCAGGGAAGAAAGTTCCCTGTTCCCCTGGCAGGCTTTTA-TTTGCAT-T-TT-AAGACACATTACTAGAAAACGATGGAGTGA-----GCTTTTCTTTGTTGCCCTGTAGTAGTAACACCACCAC-----------TAGGCTCCAAATGGGAGTCTT---CCTCCTATATTGCTGGGACTCAGTACAGAACATATTATTGCATTTCAAAAATACTTTTACAATGG-ACGTGATTTAATTTGAAAGTTCAGCTTAAGCTTTCATTTTCCTGAGTT---AAAAAAAG--GAGCAAAAAAATGTTGCAATTAAAGCCAATCCAAGCATATGCA------CTCTCTTGCCATCTAGTGAGCATACAGGGTATTGCAACAGTGTGTGGTCTTAATAATAAGGGGGTATCCTGTTAATTAAATTATGTGTATGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTTATTAC-AGTGAAATAAATATCAATTTAAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5042466 578 - 111193037 CACCTGAAAGTCA-CCAGCTTGCTGGAACATTCTTATGCAAAGACATGAAGAACCAATTATAAATTCACAGGACTGGTGTTTCACTAATCATGGGGCTAAAACTCCCCAGGGAAGAAAGTTCCCTGTTCCCCTGGCAGGCTTTTA-TTTGCAT-T-TT-AAGACACATTACTAGAAAACGATGGAGTGA-----GCTTTTCTTTGTTGCCCTGTAGTAGTAACACCACCAC-----------TAGGCTCCAAATGGGAGTCTT---CCTCCTGTATTGCTGGGACTCAGTACAGAACATATTATTGCATTTCAAAAATACTTTTACAATGG-ACGTGATTTAATTTGAAAGTTCAGCTTAAGCTTTCATTTTCCTGAGTT---AAAAAAAG--GAGCAAAAAAATGTTGCAATTAAAGCCAATCCAAGCATATGCA------CTCTCTTGCCATCTAGTGAGCATACAGGGTATTGCAACAGTGTGTGGTCTTAATAATAAGGGGGTATCCTGTTAATTAAATTATGTGTATGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTTATTAC-AGTGAAATAAATATCAATTTAAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3435130 578 + 3644372 CACCTGAAAGTCA-CCAGCTTGCTGGAACATTCTTATGCAAAGACATGAAGAACCAATTATAAATTCACAGGACTGGTGTTTCACTAATCATGGGGCTAAAACTCCCCAGGGAAGAAAGTTCCCTGTTCCCCTGGCAGGCTTTTA-TTTGCAT-T-TT-AAGACACATTACTAGAAAACGATGGAGTGA-----GCTTTTCTTTGTTGCCCTGTAGTAGTAACACCACCAC-----------TAGGCTCCAAATGGGAGTCTT---CCTCCTGTATTGCTGGGACTCAGTACAGAACATATTATTGCATTTCAAAAATACTTTTACAATGG-ACGTGATTTAATTTGAAAGTTCAGCTTAAGCTTTCATTTTCCTGAGTT---AAAAAAAG--GAGCAAAAAAATGTTGCAATTAAAGCCAATCCAAGCATATGCA------CTCTCTTGCCATCTAGTGAGCATACAGGGTATTGCAACAGTGTGTGGTCTTAATAATAAGGGGGTATCCTGTTAATTAAATTATGTGTATGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTTATTAC-TGTGAAATAAATATCAATTTAAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3390342 578 - 10304083 CACCTGAAAGTCA-CCAGCTTGCTGGAACATTCTTATGCAAAGACATGAAGAACCAATTATAAATTCACAGGACTGGTGCTTCACTAATCATGGGGCTAAAACTCCCCAGGGAGGAAAGTTCCCTGTTCCCCTGGCAGGCTTTTA-TTTGCAT-T-TT-AAGACACATTACTAGAAAACGATGGAGTGA-----GCTTCTCTTTGTTGCCCTGTAGTAGTAACACCACCAC-----------TAGGCTCCAAATGGGAGTCTT---CCTCCTGTATTGGTGGGACTCAGTACAGAACATATTATTGCATTTCAAAAATACTTTTACAATGG-ACGTGATTTAATTTGAAAGTTCAGCTTAAGCTTTCATTTTCCTGAGTT---AAAAAAAG--GAGCAAAAAAAGGTTGCAATTAAAGCCAATCCAAGCATATGCA------CTCTCTTGCCATCTAGTGAGCATACAGGGTATTGCAACAGTGTGTGGTCTTAATAATAAGGGGGTATCCTGTTAATTAAATTATGTGTATGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTTATTAC-AGTGAAATAAATATCAATTTAAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3486247 578 - 107702431 CACCTGAAAGTCA-CCAGCTTGCTGGAACATTCTTATGCAAAGACATGAAGAACCAATTATAAATTCACAGGACTGGTGTTTCACTAATCATGGGGCTAAAACTCCCCAGGGAGGAAAGTTCCCTGTTCCCCTGGCAGGCTTTTA-TTTGCAT-T-TT-AAGACACATTACTAGAAAACGATAGAGTGA-----GCTTTTCTTTGTTGCCCTGTAGTAGTAACACCACCAC-----------CAGGCTCCAAATGGGAGTCTT---CCTCCTGTATTGCTGGGACTCAGTACAGAACATATTATTGCATTTCAAAAATACTTTTACAATGG-ACGTGATTTAATTTGAAAGTTCAGCTTAAGCTTTCATTTTCCTGAGTT---AAAAAAAG--GAGCAAAAAAATGTTGCAATTAAAGCCAATCCAAGCATATGCA------CTCTCTTGCCATCTAGTGAGCATACAGGGTATTGCAACAGTGTGTGGTCTTAATAATAAGGGGGTATCCTGTTAATTAAATTATGCGTGTGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTTATTAC-AGTGAAATAAATATCAATTTAAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1023247 576 + 1565135 CACCTGAAAGTCA-CCAGCTTGCTGAAACATTCTTATGCAAAGACATGAAGAACCAATTATAAATTCACAGGACTGGTGCTTCACTAATCATGGGGCTAAAACTCCCCAGGGAGGAAAGTTCCCTGTTCCCCTGGCAGGCTTTTA-TTTGCAT-T-TT-AAG--ACATTACTAGAAAACGATGGAGTGA-----GCTTTTCTTTGTTGCCCTGTAATAGTAACACCACCAC-----------CAGGCTCCAAATGGGAGTCTT---CCTCCTGTATTGCTGGGACTCAGTACAGAACATATTATTGCATTTCAAAAATACTTTTACAATGG-ACGTGATTTAATTTGAAAGTTCAGCTTAAGCTTTCATTTTCCTGAGTT---AAAAAAAG--GAGCAAAAAAATGTTGCAATTAAAGCCAATCCAAGCATATGCA------CTCTCTTGCCATCTAGTGAGCATACAGGGTATTGCAACAGTGTGTGGTCTTAATAATAAGGGGGTATCCTGTTAATTAAATTATGTGTATGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTTATTAC-AGTGAAATAAATATCAATTTAAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3387775 578 - 13651311 CACCTGAAAGTCA-CCAGCTTGCTGGAACATTCTTAGGCAAAGACATGAAGAACCAATTATAAATTCACAGGACTGGTGTTTCACTAATCATGGGGCTAAAACTCCCCAGGGAGGAAAGTTCCCTGTTCCCCTGGCAGGCTTTTA-TTTGCAT-T-TT-AAGACACATTAATAGAAAACGATGGAGTGG-----GCTTTTCTTTGTTGCCCTGTAGTAGTAACACCACCAC-----------CAGGCTCCAAATGAGAGTCTT---CCTCCTGTATTGCTGGGACTCAGTACAAAACATATTATTGCATTTCAAAAATACTTTTACAATGG-ACGTGATTTAATTTGAAAGTTCAGCTTAAGCTTTCATTTTCCTGAGTT---AAAAAAAG--GAGTAAAAAAATGTTGCAATTAAAGCCAATCCAAGCATATGCA------CTCTCTTGCCATCTAGTGAGCATACAGGGTATTGCAACAGTGTGTGGTCTTAATAATAAGGGGGTATCCTGTTAATTAAATTATGTGTATGGGCTAATAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTGATTAC-AGTGAAATAAATATCAATTTAAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3479388 560 - 108792865 CACCTGAAAGTCA-CCAGCTTGCCAGAACATTCTTATGC--AGACATGAGGAACAAATTATAAATTCACAGGACTGAT-TTTCATTAATCATGGGGCTAAAACTCCCCAGGGAGGAAAGTTCCCTGCTCCACTGGCA-GCTTTTC-TTTGCGT-T-CT-AAGGCACAGGAATAGAAAACAACGGAACAG-----G----TC-------CACTGTAGCAGTCCCAGCACCAC-----------CAGGCTCCAAATGTGAGTCTT---CCTCCTGTATTGCT-GGGCTCACTACAGAACATACTACTGCATTGCAAACACACTTTTACAATGG-ACGTGATTTAATTTGAAAGTTGAGCTTAAGCTTTCATTTTCATGAGTTAAAAAAAAAAG--GAGT-AAATAAT-TTGCGATTAAAGCCAACCCAAGCATATGCG------CTCTCTTGCCATCTAGTGGGCATACAGGGTGTTGCAGCAGTGAGT-GTCTCAATAAT-AAGGGGTATCCTGTTAATTAAATTA-GTGTATAGGCTAACAATGAGTTATTTAATCAGCCATCTAATTATCTTGAATAACATTTTTATTGC-ATTGAAATAAATATCAATTTAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3124232 564 - 7082604 CACCTGAAAGTCA-CCAGCTTGCCAGAATGTTCTTAGGCAAAGGCATGAAGAACAAATTATAAATTCACAGGACTGAC-TTTCATTAATCATGGGGCTAAAACTCCCCAGGGAGGAAAGTTCCCTGTTCCAGTGGCA-GCTTTTA-TTTGCGT-T-TT-AAGGCACATGAATAGAAAATGATGGAACGG-----GC-TTTC-------TGCTGTAGCAGTAACAGCACCAC-----------CAGGCTCCAAATGTGAGTCTT---CCTCCTGTATTGCTGGGGCTTACTACAGAACATATTACTGCATTTCAAACATACTTTTACAGTGG-ACGTGATTTAATTTGAAAGTTGAGCTTAAGCTTTCATTTTCTTGAGTT---AAAAAAAG--GAGT-AAATAAT-TTGCAATTAAAGCCAACCCAAGCATATGCG------CTCTCTTGCCATCTAGTGGGCACACAGGGTGTTGCAACAGTGAGTGGTCTCAATACT-AA-GGGTATCCTGTTAATTAAATTATGTGTGTGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTTATTGC-ATTGAAATAAATATCAATTTAAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 609551 564 + 5243153 CACCTGAAAGTCA-CCAGCTTGCCAGAACGTTCTTATGCAAAGATGGGAAGAACAAATTATAAATTCACAGGGCTGAT-TTTCATTAATCATGGGGCTAAAACTCCCCAGGGAGGAAAGTTACCTGTTCCACTGGCA-GCTTTTA-TTTGCGT-T-TC-AAGGCACACGAATAGAAAATGGTGGAACGG-----GC-TTTC-------CGCTATAGCAGGAACAGCACCAC-----------CAGGCTCCAAATGTGAGTCTT---CCTCCGGTATTGCTGGAGCTCACTACAGAACGTATTACTGCATTTCAGACATACTTTTACAATGG-ATGTGATTTAATTTGAAAGTTGAGCTTAAGCTTTCATTTTCATGAGTT---AAAAAAAG--TAGT-AAATAAT-TTGCAATTAAAGCCAACCCAAGCATATGCG------CGCTCTTGCCATCTAGTGGGCATACAGGGTATTGCAACAGGGAGTGGTCTCAATAAT-AA-GGGTATCCTGTTAATTAAATTACATGTATGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTTATTGC-ATTGAAATAAATATCAATTTAAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3353019 564 + 7587287 CACCTGAAAGTCA-CCAGCTTGCCAGAACGTTCTTATGC--AGACATGAAGAACAAATTATAAATTCACAGGACTGAT-TTTCATTAATCATGGGGCTAAAACTCCCCAGGGAGGAAAGTTCCCTGTTCCACTGGCA-GCATTTA-TTTGCGT-T-TT-AAGGCACATGAATAGAAAATGATGGAATGG-----GCTTTCC-------CACTGTAGCAGTAACAGCACCAC-----------CAGGCTCCAAACGCGAGTCTT---CCTCCGGTATTGCTGGGGCTCACTACAGAACATATTACTGCATTTCAAACATACTTTTACAATGG-ACGTGATTTAATTTGAAAGTTGAACTTAAGCTTTCATTTTCATGAGTT---AAAAAAAG--GAGT-AAATAAT-TTGCAATTAAAGTCAACCCAAGCGTATACA------CTCTCTTGCCATCTAGTGGGTATACAGGGTGCTGCAACAGTGAGTGGTCTCAATAAT-AAGGGGTATCCTGTTAATTAAATTATGTGTATGGGCTAACAATGAGTTATTTAATCAGCCATTTAATTATCTTGAATAACATTTTTATTGC-ATTGAAATAAATATCAGTTTAAC i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2664263 567 - 159902609 CACCTGAAAGCCC-CTGGCTTGCCAGAACATTC-TATGCAAAGAAACAAGGAACAAATTATAAATTCATAGGACTGACATCTCATTAATCATGGGGCTAGAACTCCTCAGGGAGGAAAGTTACCTGTTCCACTCACAGGTTTTTA-TTTGCTT-T-TTTAAGACACAGTAATAGAAAATTATGGAATAA-AAATGCTTTCCTTTGT-----TGTAGTAGTAAT---AACAG-----------CAGGCACCAAATGTAAGTCTT---CCACCTATATTGTTGGGACTCAGTACATAACATATTATTGTGTTTCAAAAATACTTCTACAATGG-ATGTAATTTAATATGAAAGTTTAGCTTAATCTTTCATTTTCATGAGTT---TAAAAAAG--GAGTGGAAAAATTGTGCAATTAAGGCAGATTGAAGCACATGCG------TTCTGGTGCCATCTAGTGACCATACCTGATATTGCAGGAGTGTGTGGTCTTACTAC--ATGGGGTGTCATGTTAATTAAATTA------TGGACTAACAATGAGTTATTTAATCAGCCATTTAATTATTTTGAATAACGTTGTTATTACTAGTGAAATAAATATTAATTTAAC i micMur3.chr8 I 1005 I 284 s proCoq1.NW_012151163v1 976219 570 + 1238772 CACCTGAAAGCCG-CTGGCTTGCCAGAACATTCTTATGCAAAGAACCAAAGAACAAATTATAAATTCACAGGACTGATGTCTCATTAATCATGGGGCTAAAACTTCCCAGGGAGGAAAGTTACCTGTTCCACTCGCAGGTTTTTA-TTTGCTT-T-TTTAAGACACGTTAATAGAAAATTATGGAATAA-AAATACCTTTCTTTGT-----TGTAGTAGTAATAACAACAG-----------CAGGCACCAAATGTAAGTCTT---CTACCTATATTGTTGGGACCCAGTACAGAACATATTATTGTGTTTCAAAAATACTTTTACGATGG-ATGTAATTTAATATGAAAGTTTAGCTTAATCTTTCATTTTCATGAGTT---TAAAAAAG--GAGTGAAAAAATTTTGCAAATAAGGCTGATTGAAGCACGTGCA------TTCTGGTGCCATCTAGTGACCGCACGTGACATTGCAGGAGTGTGTGGTCTTACTAC--ATGGGGTGTCGTGTTAATTAAATTA------TGGACTAACAATGAGTTATTTAATCAGCCATTTAATTATTTTGAATAACATTATCATTAC-AGTGAAATAAATATTAATTTAAC i proCoq1.NW_012151163v1 I 563 C 0 s otoGar3.GL873658 2556891 567 + 5252280 CTCTTGAAGGTCA-CCAGCTTGCCAGGACATTCTCATGCAAAGAGTT---GAACAAATTACAAACTCACAAGGCTGATGTTTCATTAATCAT-GGGTTAAAACTTTTCAGGGAAGGAAGTTACCTGTTACACTTATGGGGTTTTA-TTTGCTT-T-TTAAAGACACAATAATAGAAAATTATGGAACAA-AAATACGTTTCTTTGT-----TGGAGTAGTTAT---AACAG-----------CAGGAGCCAAATATAAGTCTT---CTACCTATCTTATTGAGACTTAATACAGAACGTATTATTGTGTTTCAGAAATACTTTTACAGTGGAATATAATTTAATTTGAAAGTTTAGCTTAATCTTTCATTTTCATGAG-T---TAAAAAAG--GAGTGAAAAAATTTTGCAATTAAGGCTGATTTAAGCACGTGCG------TTCTGTGGTCATCTAGTGGCCATACTTGGTATTGCAGAA--GTGTGGTCTTCGTAC--ATGGGGTGTCATTGTAGTTAAATTATGTCTGTGGGTTAACAATGAGTTACTCAATCAGCCACTTAATTGTTTTGAATAACATTATTACTAC-AATGAAATAAATATTAATTTAAC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91428787 473 - 120129022 --------------CTTGGTTGCC------TTCTTAGGC--------------------------TTGCAGCACTGGTGGTGC-CCAGCCAC-AGGCTGAAGATGCTCAGGGAGGAAG--TCGCTGCTCAGCTGCAGTGCACTCAGCTTGCCT-T-TCTGAGAGACTCTGTTAGAAAATAGTGTAACAAAAAACGCTTTCCTTTGTTTTACTGCAGTAGTGACACCGCCAGCAATGTAGGCACAGGCACCAAACGTCTGCCTGTGACATCCTGTCAC-CCAAGGTTCTGAACGGGACGGATTATCATGTCTCAAAAATACTTTCTCCATGG-ATGTAATTTAAATTAAAAGTTTGATTTAATC-TTGATTTTCATGAGTT---A--------------AAGAAATGCTGTAAGGAAAGTGGATGTGAGCACATGCA------GTCTGCTGCCATCTAGTGGACACGACAAGTATTGCCACAGTAGCTGGGCTGCATAG--CTGGGGCCT-----------------GTGTGCCAGCTAACAATGACCTAATTAATCAGCCTTTTAATGAT--------------------------------------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2053805 506 + 64289059 --------------------TGCC-GCACTGGCTTCTGCAAACA----AAGAGCAAACTGTAAATCTACAGGGCCAACGTCTCATTAATCATGGGGCTAAAACCCCCC--GGAGGGAAGTTACCTGTTCCACTGGTAGATTTTTA-TTTGCAT-CGCT-AAGACACATTAATAGAAGATTATGGGATAA-AAGTGCTTTTCTTTGTTGCACTGTGGTGGTAAGAACACCGT-----------CAAGCACCAAATGGAAGT-TT---CCACCTATATCGTTGGGACTCAAGAC--AACCTATCATTG--TTTCAGAAATGCCT-TATGATAA-ATGCAGTGTAATTTGCAATTTTCAGCTAATCTTTCATTTTCATGAGTT---ACAAAAAG-------TGAAAATTGTGCCGTGGAGGCCTGAGTGAGCACGTGCATGCGCCTTCCCTGGCTGTC-GGTGAGCAC------------------GTGCGGCCTT---------GGCGTATGCC-TTAGCT-------GTTTGTGAGGCGACACTGAGTTATGTCATCAGCCATTCAGTTATTTTGAATAACG-TTCTGTTAC-GGTGAAAGAAATAC--------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 589596 573 + 2232271 CCCCTGAAATTCACCCAACTTGCCAGAAGGTTCTTGGGCAAAGAAATGGAGCACAAAGTATAAATTTGCAGGAGTGATCTTTCATTAATCATGAGACTAAAACCCCTGAGAGAAGGAAGCTACCTGTTCCACTGGTGGGTTTATA-TTTTCACGT-GT-AAAATGCATTCGTAGAAAATTATGGAATCA-AAACG-TTTTCTTTGTTGTGTTCTAGAGTTAAAAACAACCC-----------CAGGC-----ATGAG----CT---CTCCCTGTGTTGTTAAAACTCACTACAGAACTTATTATTGTGTCTCAAAAACACCTTTACAATGA-ACACAATTTAATTTGAAAATTTAGATTAATCCTTCATTTTCATGAGTT---AAAAAAAAAAGAGTGAAAAAAAAGTGCAGTGATGGCAGTGCCAAGCATGTGCA------GTCTGTTGCCATCTAGTGAGAGTACACGCTATTGCAATATTATATTGTCTTAATA---TGTAGGtattattttaattaaattatttGTATGAGCCAACAATGAGTTATTTAATCAACCATTTAATTATTTTGAATAATATTCCTATTGC-AGTGAAATAAATATTCATTTAAC i dasNov3.JH580157 C 0 C 0 a score=482698.000000 s hg38.chr2_KI270769v1_alt 72058 42 + 120616 TTCTTAGCAATG--AAATGTATTCATACGTTTTAGCCCTGGATA s panTro5.chr2A 3533850 42 + 111504155 TTCTTAACAATG--AAATGTATTCATATGTTTTAGCCCTGGATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3394602 42 + 114371477 TTCTTAACAATG--AAATGTATTCATATGTTTTAGCCCTGGATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 272439 42 + 637652 TTCTTCACAATG--AAATGTATTCATATGTTTTAGCCCTGGATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3068375 42 + 81552678 TTCTTAACAATG--AAATGTATTCATATGTTTTAGCCCTGGATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3331904 42 + 108979918 TTCTTAACAATG--AAATGTATTCATATGTTTTAGCCCTGGATA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5043044 42 - 111193037 TTCTTAACAATG--AAATGTATTCATATGTTTTAGCCCTGGATA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3435708 42 + 3644372 TTCTTAACAATG--AAATGTATTCATATGTTTTAGCCCTGGATA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3390920 42 - 10304083 TTCTTAACAATG--AAATGTATTCATATGTTTTAGCCCTGGATA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3486825 42 - 107702431 TTCTTAACAATG--AAATGTATTCATATGTTTTAGCCCTGGATA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1023823 42 + 1565135 TTCTTAACAATG--AAATGTATTCATATGTTTTAGCCCTGGATA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3388353 42 - 13651311 TTCTTAACAATG--AAATGTATTCATATGTTTTAGCCCTGGATA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3479948 40 - 108792865 TTCTTAACGATG---AACATATTCATACATTGTAGCCCTGGAT- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3124796 40 - 7082604 TTCTTAACGATG---AATATATTCATACATTTTAGCCCTGGAT- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 610115 36 + 5243153 TTCTTAACGATG---AACATATT----CATTTTAGCACTGGAT- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3353583 40 + 7587287 TTCTTAGCAATG---AATATATTCATACGTTTTAGCCCTGGAT- i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 976789 41 + 1238772 TTTTTA---ACGAGAAATTTATTCATATGTTCCAGCCCTGAATA i proCoq1.NW_012151163v1 C 0 I 839 s otoGar3.GL873658 2557458 43 + 5252280 TTCTTAATGATGAGAAATCTGTTCATATATTACAGCCTCAAAT- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91429260 30 - 120129022 ---------AAG--AAATTTGCTCATATGTTCTAGTTCTGA--- i mm10.chr12 C 0 C 0 s canFam3.chr17 2054311 43 + 64289059 TTTTTTATGATGAGAAATCTACTCAGGCGTCTCAGCCCCAGAT- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 590169 43 + 2232271 TTTTTAATGATGAAAAATCTATTCATATGCTTCAGCCCCAGAT- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2664830 284 - 159902609 I a score=1519423.000000 s hg38.chr2_KI270769v1_alt 72100 176 + 120616 AATCTGCATGAT-ATGCTATAATGCACAGTGGCATGTATTATAAAGCATT------GAAAA--TGTCACTATCTTCACTTTTTAAATACTTCTTCCTCTCCTTAGGCCTCACTGTAGCCTTAGGGCACCTGCACTGGCAGACCATATGGATGCAGGTGCCTGCCACCTTAGGTG-GCTTGGGCC-CC s panTro5.chr2A 3533892 176 + 111504155 AATCTGCATGAT-ATGCTATAATGCACGGAGGCATGTATTATGAAGCATT------GAAAA--TGTCACTATCTTCAATTTTTAAATACTGCTTCCTCTCCTTAGGCCTCACTGTAGCCTTAGGGCACCTGCACTGGCAGACCATATGGATGCAGGTGCCTGCCACCTTAGGTG-GCTTGGGCC-CC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3394644 176 + 114371477 AATCTGCATGAT-ATGCTATAATGCACGGCGGCATGTATTATAAAGCATT------GAAAA--TGTCACTATCTTCACTTTTTAAATACTGCTTCCTCTCCTTAGGCCTCACTGTAGCCTTAGGGCACCTGCACTGGCAGACCATATGGATGCAGGTGCCTGCCACCTTAGGTG-GCTTGGGCC-CC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 272481 176 + 637652 AATCTGCATGAT-ATGCTATAATGCGCAGTGGCATGTATTATAAAGCATT------GAAAA--TGTCACTATCTTCACTTTTTAAATACTGCTTCCTCTCCTTAGGCCTCACTGTAGCCTTAGGGCACCTGCACTGGCAGACCATATGGATGCAGGTGCCTGCCACCTTAGGTG-GCTTGGGCC-CC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3068417 176 + 81552678 AATCTGCATGAT-ATGCTATGATGCACAGTGGCATGTATTATAAAGCACT------GGAAA--TGTTACTATCTCCACTTTTTAAATACTGCTTCCTCTCCTTAGGCCTCACTGTAGCCTTAGGGCACCTGCACTGGCAGACCATATGGATGCAGGTGCCTGCCACCTTAGGTG-GCTTGGGCC-CC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3331946 176 + 108979918 AATCTGCATGAT-ATGCTACAATGCACAGTGGCACGTATTATAAAGCATT------GAAAA--TGTCACTATCTTCACTTTTTAAATACTGCTTCCTCTCCTTAGGCCTCACCGTAGCCTTAGGGCACCTGCACTGGCAGACTATATGGATGCAGGTGCCTGCCACCTTAGGTG-GCCTGGGCC-CC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5043086 176 - 111193037 AATCTGCATGAT-ATGCTACAATGCACAGTGGCACGTATTATAAAGCATT------GAAAA--TGTCACTATCTTCACTTTTTAAATACTGCTTCCTCTCCTTAGGCCTCACCGTAGCCTTAGGGCACCTGCACTGGCAGACTATATGGATGCAGGTGCCTGCCACCTTAGGTG-GCCTGGGCC-CC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3435750 176 + 3644372 AATCTGCATGAT-ATGCTACAATGCACAGTGGCACGTATTATAAAGCATT------GAAAA--TGTCACTATCTTCACTTTTTAAATACTGCTTCCTCTCCTTAGGCCTCACCGTAGCCTTAGGGCACCTGCACTGGCAGACTATATGGATGCAGGTGCCTGCCACCTTAGGTG-GCCTGGGCC-CC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3390962 176 - 10304083 AATCTGCATGAT-ATGCTACAATGCACAGTGGCACGTATTATAAAGCATT------GAAAA--TGTCACTATCTTCACTTTTTAAATACTGCTTCCTCTCCTTAGGCCTCACCGTAGCCTTAGGGCACCTGCACTGGCAGACTATATGGATGCAGGTGCCTGCCACTTTAGGTG-GCCTGGGCC-CC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3486867 177 - 107702431 AATCTGCATGAT-ATGCTACAATGCCCAGTGGCACATATTATAAAGCATT------GAAAA--TGTCACTATCTTCACTTTTTAAATACTGCTTCCTCTCCTTAGGCCTCACCGTAGCCTTAGGGCACCTGCACAGGCAGACTATATGGATGCAGGTGCCTGCCACCTTAGGTG-GCTTGGGCCTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1023865 176 + 1565135 AATCTGCATGAT-ATGCTACAATGCACAGTGGCACGTATTATAAAGCATT------GAAAA--TGTCACTATCTTCACTTTTTAAATACTGCTTCCTCTCCTTAGGCCTCACCGTAGCCTTAGGGCACCTGCACTGGCAGACTATATGGATGCAGGTGCCTGCCACTTTAGGTG-GCCTGGGCC-CC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3388395 176 - 13651311 AATCTGCATGAT-ATGCTATAATGCACAGTGGCACGTATTATAAAGCATT------GAAAA--CGTCACTATCTTCACTTTTTAAATACTGCTTCCTCTCCTTAGGCCTCACCGTAGCCTTAGGGCACCTGCACTGGCAGACCGTATGGATGCAGGTGCCTGCCACCTTAGGTG-GCCTGGGCC-CC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3479988 147 - 108792865 -ATCTGCATGAT-ATGCTGTAATGCGCAGTGGTGTGTATTATTAAGCATT------GAAAA--TGTCACTCTCTTCAC---------------------------GCCTCGCTGTAGCCTTAGGGCAGCTGCACTGGCA-GCCATATGGATGTAGGTGCCCACTACCTTAGATG-GCCTGTTCA-TC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3124836 132 - 7082604 -ATCTTCATGAT-ATGCTGTAATGCACAGTGGCATGTATTATTAAGCATT------GAAAA--TGTCA----CTTCAC---------------------------GCCTCACTGTAGCCTTAGGGCAG------------GCCACATGGATGTAGGTGCCCACCTCCTTAGCTG-GCCTGGCCA-TC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 610151 130 + 5243153 -ATCTGCATGATAATGCTGTAATGCACAGTGGCATGTATTATTAAGCATT------GAAAA--GGTCACTCTCTTC----------------------------------------------GGGCAGCTGCACTGGCAGGCCACATGGATGTAGGTGCCCACCACCTTAGATG-GCCTGGCCG-TC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3353623 148 + 7587287 -ATCTGCATGAT-ACGCTGTAATGCACAGTGGCATGTATTATTAAGCATT------GAAAA--TGTCACTCTCTTCAT---------------------------GCCTCAATGTAGCCTTAGGGCAGCTGCAATGGCAGGCCATATGAATGTAGGTGCCCGCCACCTTAGATG-GCCTGGCCA-TC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2557501 129 + 5252280 -ATCTGCATAAT--TCCTGTAAGGCCTGTTTGCATGTATCACAAAGCTCT------AAAAA--CTTCACCGTTCCCACTCTCCATAGGCTGC--CCATCCCACAGACCACCCCG------------------------------------TGCACATGTCCCTTGCCT--------CCTGAGCC-CC i otoGar3.GL873658 C 0 I 14 s mm10.chr12 91429290 105 - 120129022 GAGTCCCACTAT-ATATTTCCAGGAACACCCGCTTGCAAGACAAAGCCCTTCGTTCATAAA--TGTGA----------------------------TATCCTGAGGTTTCACAGTAGCCATAAGATACCTGGACAG--------------------------------------------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2054354 168 + 64289059 -ACCCGCAAGAC-ATGTTGTTGGGCCCAGTGACGTGCATTCTGAGGCCTG------GGAGA--TTTC-CTGTCT-CACATTTTAAATGCCAGTTCCTTTCCCTAGACC-CGTGGTAGTGCTAGGGCGCCCACGCTGGCCGGCTGCTTGGGTAT-GCCGCTGACCGCCTCAGGTGCGCCGAGG----- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 590212 137 + 2232271 -ATCTGCATAAT-GTACTGTAAAGA--------------CACAGAGCCTT------GAAAGTTTTTCACCAAACTCACTATTAAAATGTTACTTCCTGTCTTTGGATTTT-TCATTGAGTTAAGGCACCTACACTGGCTAACCACATTTGTGT----------------------GCCTAGA----- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2664830 284 - 159902609 I e proCoq1.NW_012151163v1 976830 839 + 1238772 I a score=399404.000000 s hg38.chr2_KI270769v1_alt 72276 55 + 120616 CCCTCCCCCGG-GTGCCCCTGGGAGGCCACTTCCCTC---CTG--GTGTCCCCACAGCTCG-- s panTro5.chr2A 3534068 55 + 111504155 CCCTCCCCCGG-GTGCCCCTGGGAGGCCACTTCCCTC---CTG--GTGTCCCCACAACTCG-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3394820 55 + 114371477 CCCTCCCCCGG-GTGCCCCTGGGAGGCCACTTCCCTC---CTG--GTGTCCCCACAACTCG-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 272657 55 + 637652 CCCTCCCCCAG-GTGCCCCTGGGAGGCCACTTCCCTC---CTG--GTGTCCCCACAGCTCG-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3068593 55 + 81552678 CCCTCCCCCGG-GTGCCCCTGGGAGGCCACTTCCCTC---CTG--GTGTCCCCACAGCTCG-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332122 53 + 108979918 CCTCCCCC--G-GTGCCCCTGGGAGTCCACTTCCCTC---CTG--GTGTCCCCACAGCTCG-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5043262 53 - 111193037 CCTCCCCC--G-GTGCCCCTGGGAGTCCACTTCCCTC---CTG--GTGTCCCCACAGCTCG-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3435926 53 + 3644372 CCTCCCCC--G-GTGCCCCTGGGAGTCCACTTCCCTC---CTG--GTGTCCCCACAGCTCG-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3391138 53 - 10304083 CCTCCCCT--A-GTGCCCCTGGGAGTCCACTTCCCTC---CTG--GTGTCCCCACAGCTCG-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3487044 53 - 107702431 CCTCCCCC--G-GTGCCCCTGGGAGTCCACTTCCCTC---CTG--GTGTCCCCACAGCTCG-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1024041 53 + 1565135 CCTCCCCC--G-GTGCCCCTGGGAGTCCACTTCCCTC---CTG--GTGTCCCCACAGCTCG-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3388571 53 - 13651311 CCTCCCCC--A-GTGTCCCTGGGAGTCTACTTCCCTC---CTG--GTGTCCCCACAGCTCA-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3480135 55 - 108792865 CCCTCCCG--G-GCACCCCTGGGGGTCCAGTTCCCTC---CGACTGCATCCCTGCAGCTTG-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3124968 55 - 7082604 CCTTCCCG--G-GCACCCCTGGGAGTCCAATTCCCTC---CTGCTGCGTGCCCACAGCTCG-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 610281 48 + 5243153 CCCTCCCG--G-GC----------GTCCACTTCCCTCCTGCGGCTGTGTCCCCGCAGCTCG-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3353771 58 + 7587287 CCCTCCCG--G-GCAGCCCTGGGAGTCCACTTCCCTCCTGCTGCTGCGTCCCTGCAGCTCG-- i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91429395 27 - 120129022 -----------------------------TTTTCAGC---TTC--ACGTCCTTATACCTCC-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2054522 21 + 64289059 -----------------------------------CC---CAT--GTGTCCCTGCCCCACA-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 590349 55 + 2232271 CCTGCCCC--GTGTACCTCCAGAGGTCCACTTACCTC---TAT--GTGTCCCC-TAGATTACA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2664830 284 - 159902609 I e proCoq1.NW_012151163v1 976830 839 + 1238772 I e otoGar3.GL873658 2557630 14 + 5252280 I a score=323611.000000 s hg38.chr2_KI270769v1_alt 72331 42 + 120616 -CCAGTATGCA-CATCAGAACCCGCCGTGGCTCCGCACATGATG s panTro5.chr2A 3534123 42 + 111504155 -CCAGTGTGCA-CATCAGAACCCGCCGTGGCTCCGCACGTGATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3394875 42 + 114371477 -CCAGTGTGCA-CATCAGAACCCGCCGTGGCTCCGCACGTGATG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 272712 42 + 637652 -CCAGTCTGCA-CATCAGAACCCGCCGTGGCTCCGCACATGATG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3068648 42 + 81552678 -CCAGTCTGTG-CATCAGAACCCGCCGTGGCTCCGCACATGATG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332175 42 + 108979918 -CCAGTCTGCA-CATCACCACCCGCCATGGCTCCGCACATGATG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5043315 42 - 111193037 -CCAGTCTGCA-CATCACCACCCGCCATGGCTCCGCACATGATG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3435979 42 + 3644372 -CCAGTCTGCA-CATCACCACCCGCCATGGCTCCGCACATGATG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3391191 42 - 10304083 -CCAGTCTGCA-CATCACCACCCGCCATGGCTCCGCACATGATG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3487097 42 - 107702431 -CCAGTCTGCA-CATCACCACCCACCATGGCTCCGCACATGATG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1024094 43 + 1565135 -CCAGTCTGCATTATCACCACCCGCCATGGCGCCGCACATGATG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3388624 42 - 13651311 -CCAGTCTGCA-CATCACCACCCGCCATGGCTCCGCACATGATG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3480190 42 - 108792865 -CCACTCTGCA-CCTTACCACCCACCGTGGCTCCGCTTGTCATG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3125023 42 - 7082604 -CCACCCTGCT-CCTCACCACCCGCTGTGGCTCCGCACGTCATG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 610329 40 + 5243153 -CCACCCCGCA-CCTCACCACCCGCTGTGGCTCCGCAAGTCA-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3353829 42 + 7587287 -CCACTCTGCA-CCTCACCACCCGCTGTGGCTCTGCACGTCATG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2557644 40 + 5252280 -CCAACGTGCA-CCTCG-CACCTGCC-TGGTTTCTCCTCTCACA i otoGar3.GL873658 I 14 C 0 s mm10.chr12 91429422 35 - 120129022 -------CACA-CAGCATTGACTATTGTGGCTTCTCTTTTGTG- i mm10.chr12 C 0 C 0 s canFam3.chr17 2054543 7 + 64289059 -----------------------------------CAGGTGA-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 590404 43 + 2232271 CCCACACTGCA-CATCTCCTCCTATTTTGACTTCTTGTATAATT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2664830 284 - 159902609 I e proCoq1.NW_012151163v1 976830 839 + 1238772 I a score=3212933.000000 s hg38.chr2_KI270769v1_alt 72373 257 + 120616 GAAAGGAGCACGCAGCTGCATCAGCTACCT-------TCCGTCTTGCTGAAATTAGACTGCAGAAGTCCTTG-CTGGTTGCAGAATGGTTGTAAATCTAGTTTCACGGCCTGTAAA-CACGTGTGGCTGCTGAAA-AGAAATGGTGAAGATTGAGCTAAAATAGACTTGTCCCTGGAAGTAAGTCATTCATGTCCTTTACAAAAGCCAAATCCACAGGATCTGGAGAGTAGGTTAAGCTCTCT-TG-AGGAGCTTCTTTTGGCCATTTT s panTro5.chr2A 3534165 257 + 111504155 GAAAGGAGCACGCAGCTGCATCAGCTACCT-------TCCGTCTTGCCGAAATTAGACTGCAGAAGTCCTTG-CTGGTTGCAGAATGGTTGTAAATCTAGTTTCACGGCCTGTAAA-CACATGTGGCTGCTGAAA-AGAAATGGTGAAGATTGAGCTAAAATAGGCTTGTCCCTGGAAGTAAGTCATTCATGTCCTTTACAAAAGCCAAATCCATGGGATCTGGAGAGTAGGTTAAGCTCTCT-TG-AGGAGCTTCTTTTGGCCATTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3394917 257 + 114371477 GAAAGGAGCACGCAGCTGCATCAGCTACCT-------TCCGTCTTGCCGAAATTAGACTGCAGAAGTCCTTG-CTGGTTGCAGAATGGTTGTAAATCTAGTTTCACGGCCTGTAAA-CACATGTGGCTGCTGAAA-AGAAATGGTGAAGATTGAGCTAAAATAGGCTTGTCCCTGGAAGTAAGTCATTCATGTCCTTTACAAAAGCCAAATCCATGGGATCTGGAGAGTAGGTTAAGCTCTCT-TG-AGGAGCTTCTTTTGGCCATTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 272754 257 + 637652 GAAAGGAGCACGCAGTTGCATCAGCTACCT-------TCCGTCTTGCTGAAATTAGACTGCAGAAGTCCTTG-CTGGTTGCAGAATGGTTGTAAATCTGGTTTCACGGCCTGTAAA-CACATGTGGCTGCTGAAA-AGAAATGGTGAAGATTGAGCTAAAATAGGCTTGTCCCTGGAAGTAAGTCATTCATGTCCTTTACAAAAGCCAAATCCACGGGATCTGGAAAGTAGGTTAAGCTCTCT-TG-AGGAGCTTCTTTTGGCCATTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3068690 256 + 81552678 GAAAGGAGCATACAGCTGCATCGGCTACCT-------TCCGTCTTGCTGAAATTAGACTGCAGAAGTCCTTT-CTGGTTGCAGAATGGTTGTAAATCTAGTTTCACAGCCAGTAAA-CACATGTGACTGCTGAAA-AGAAATGGTGAAGATTGAGCTAAAATAGGCTTGTCCCTGGAAGGAAGTCATTCATGTCCTTTAC-AAAGCCAAATCTACGTGATCTGGAGAGTAGGTTAAGCTCTCT-TT-AGGAGCTGCTTTTGGCCATTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332217 258 + 108979918 GAAAGGAGCAGGCAGCTGCATCAGCTACCT-------TCCGTCTTGCTGGAATTAGACTGCACAAGTCCTTT-CTGGTTGCAGAACAGTTGTAAATCTAGTTTCACAGCCAGTAAACCACGTGTGGCTGCTGAAA-AGAAATGGTGAAGATTGAGCTAAAATAGGCTTGTCCCTGGAAGCAAGTCATTCATGTCCTTCAC-AAAGCCAAATCTACGTGATCTGGAGAGTAGGTTAAGCTCTCTCTA-AAGAGCTTCTTTTGGCCATTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5043357 258 - 111193037 GAAAGGAGCAGGCAGCTGCATCAGCTACCT-------TCCGTCTTGCTGGAATTAGACTGCACAAGTCCTTT-CTGGTTGCAGAACAGTTGTAAATCTAGTTTCACAGCCAGTAAACCACGTGTGGCTGCTGAAA-AGAAATGGTGAAGATTGAGCTAAAATAGGCTTGTCCCTGGAAGCAAGTCATTCATGTCCTTCAC-AAAGCCAAATCTACGTGATCTGGAGAGTAGGTTAAGCTCTCTCTA-AAGAGCTTCTTTTGGCCATTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3436021 258 + 3644372 GAAAGGAGCAGGCAGCTGCATCAGCTACCT-------TCCGTCTTGCTGGAATTAGACTGCACAAGTCCTTT-CTGGTTGCAGAACAGTTGTAAATCTAGTTTCACAGCCAGTAAACCACGTGTGGCTGCTGAAA-AGAAATGGTGAAGATTGAGCTAAAATAGGCTTGTCCCTGGAAGCAAGTCATTCATGTCCTTCAC-AAAGCCAAATCTACGTGATCTGGAGAGTAGGTTAAGCTCTCTCTA-AAGAGCTTCTTTTGGCCATTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3391233 258 - 10304083 GAAAGCAGCAGGCAGCTGCATCAGCTACCT-------TCCGTCTTGCTGGAATTAGACTGCACAAGTCCTTT-CTGGTTGCAGAATGGTTGTAAATCTAGTTTCACAGCCAGTAAACCACGTGTGGCTGCTGAAA-AGAAATGGTGAAGATTGAGCTAAAATAGGCTTGTCCCTGGAAGCAAGTCATTCATGTCCTTCAC-AAAGCCAAATCTACGTGATCTGGAGAGTAGGTTAAGCTCTCTCTA-AAGAGCTTCTTTTGGCCATTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3487139 258 - 107702431 GAAAGGAGCAGGCAGCTGCATCAGCTACCT-------TCCGTCTTGCTGGAATTAGACTGCACAAGTCCTTT-CTGGTTGCAGAACGGTTGTAAATCTAGTTTCACAGCCAGTAAACCACGTGTGGCTGCTGAAA-AGAAATGGTGAAGATTGAGCTAAAATAGGCTTGTCCCTGGAAGCAAGTCATTCATGTCCTTCAC-AAAGCCAAATCTACGTGATCTGGAGAGTAGGTTAAGCTCTCTCTA-AAGAGCTTCTTTTGGCCATTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1024137 258 + 1565135 GAAAGGAGCAGGCAGCTGCATCAGCTACCT-------TCCGTCTTGCTGGAATTAGACTGCACAAGTCCTTT-CTGGTTGCAGAATGGTTGTAAATCTAGTTTCACAGCCAGTAAACCACGTGTGGCTGCTGAAA-AGAAATGGTGAAGATTGAGCTAAAATAGGCTTGTCCCTGGAAGCAAGTCATTCATGTCCTTCAC-AAAGCCAAATCTATGTGATCTGGAGAGTAGGTTAAGCTCTCTCTA-AAGAGCTTCTTTTGGCCATTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3388666 258 - 13651311 GAAAGGAGCAGGCAGCTGCATCAGCTACCT-------TCCGTCTTGCTGAAATTAGACTGCACAAGTCCTTT-CTGGTTGCAGAACGGTTGTAAATCTAGTTTCCCAGCCAGTAAACCACGTGTGGCTGCTGAGA-AGAAATGGTGAAGATTGAGCTAAAATAGGCTTGTCCCTGGAAGCAAGTCATTCATGTCCTTCAC-AAAGCCAAATCTACGTGATCTGGGGAGTAGGTTAAGCTCTCTCTA-AAGAGCTGCTTTTGGCCATTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3480232 254 - 108792865 GAAGGGAGCACGCAGCTGCATCAGCTACCT-------TCTGTCTTGCTGAGATTACACTGCACAAGTCCTTT-CTGGTGGCAGAAAGGTTGTCAGTCTAGTTTCACAGCCACT----TACATGTGGCTGCTGAGA-AGAAATGATGAAGATTGAGCTAAAATAGGCTTGTCCTTGGAAGCAAGTTGTTCGTTTCCTTTCC-AAAGCCAAATCTACGTGATCTGGAGAATAGGTTAAGCTCTCTCTG-CAGAGCTGCTTTTGGCCATTTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3125065 262 - 7082604 GAGGGGAGCACGCAGCTGCATCAGCTACCTACCTTCAGCTGTCTTGCTGAGATTACACTGCACGAGTCCTTT-CTGGTGGCCGAAAGGTTGTCAGTCTAGTTTCACAGCCACT--A-AACACGTGGCTGCTGAGA-AGAAATGGTGAAGATTGAGCTAAAATAGGCTTATCCCTGGAAGCAAGTCATTCATGTCCTTTCC-ACAGCCAAATCTACATGATCTGGAGAGTAGGTTAAGCCCTCTCCA-CAGAGCTGCTTTTGGTCATTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 610369 241 + 5243153 ----------------TGCATCAGCTACCT-------TCTGTCTTGCTGAAATGATACTGCACAAGTCCTTT-CTGGTGGCAGAAAGGTTGTCAGTCTAGTTTCACAGCCACTAAA-CACGTGTGGCTGCTGAGA-AGAAATGGTGAAGATTGAGCCAAAATAGCCTTATCCCTGGAAGCAAGTCATTCATGTCCTTTCC-AAAGCCAAATCTACATGATCTGGAGAGTAGGTTGAGCCCTCTCTA-CAGAGCTGCTTTTGGCCATTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3353871 257 + 7587287 GAAGGGAGCGCACAGCTGCATCAGCTACCT-------TCTATCTTGCTGAGATTACACTGCACAAGTCCTTT-CTGGTGGCAGAAAGGTTGTCAGTCTAGTTTCACAGCCACTAAA-CACGTGTGGCTGCTGAGA-AGAAATGGTGAAAATTGAGCTAAAATAGGCTTGTCCTTGGAAGCAAGTCATTCATGTCCTTTCC-AAAGCCAAATCTACGTGATCTGGAGAGTAGGTTAAGCTCTCTCTACCAGAGCTGC-TCTGGCCACTTT i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2665114 256 - 159902609 GAAAGGAGCGTGCAACTGCATGAACCACCT-------TTCTTCTTGCTTAAATTGCACTGCACAGGCCTTT--CTGGTTGCAGAACGGTTGTAAATCTAGTTTCACAGCCACCGAG-CAAGCGTGGCTGCTGAAA-GAAAAGGGTGAAGATTGAGCTGAAGTAGGTTTGTCCCTGGAAGCAAGTCATTCGTGTCCTTTGC-AAAGTCAAATACGTATAATCTGGAGAGGAGATTAAGCTGTCTCTG-AAGAGCTGCTTTTAGCCATTTT i micMur3.chr8 I 284 I 520 s otoGar3.GL873658 2557684 239 + 5252280 GAAAAGTGTGTGCAGCTACACACACCACC------------------------CACACTCCACAAGTCCTC--TCAGTTGCAGAATGGTTGTGAATCTAGTTTCACAGCCACTGAA-CAAGTGTGGCTGCAGAAA-GAAGAGGGTGGATATTGAGCTGAAATGGGCTTATCCCTGGAAGCAGGTCATTTATGTCCTTTTC-AAAGTCAAATGTGTGTCATCTGGAGAATTGACCAAGCTGCCTCTG-AAGAGTAGCTTTTAGCCATTTC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91429457 245 - 120129022 GGGAAGAGCCTGCCAC-ACACAGGGTGCC--------TCCTCTTTGCTTGGAAAACACTACATAAAGCCTTTGTTGGCAACAGAACAGCCATTAATACAATTTAGCAGTCTCTCAG-CCAATGCAGTTTTTA----------GGTGCAAGTCAGGCAAGAAT--GCTTTTGCCCACATATGAGTGTTTGTATTTCTATTC-AAGGGCAGGTCAGTGTAGTCAGAAGAGTAGAGCGGACACACTACA-AGAAGCTGTTGTCAGCTGGCCT i mm10.chr12 C 0 C 0 s canFam3.chr17 2054550 224 + 64289059 ------------------CACCAGCTTCTT-------CCTGCCT--CTGTCACTGCA---CACAAACCCTTT-CTGGCTGCA-AACCGTTGTAAATCCAGCTTCACGGCCACCAAA-CCCACGTAGCTGCTGTAG-GAGAAGGGTGAGCGTGGAACTAAAACAGGCCTGTCC-TGTAAGC-AGTCCCTCGTGGCCTGCCT-CGGAGCCAGCCTGCGTGCTCTGCAGTGTGCAGTAAATT-----AG-GAGAGCTCAGCGGAGACATC-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 590447 252 + 2232271 TAAGGAAGAGTATAACTGCGTAAATCACCT-------TCCTTCTTGC----ACTACTTTACACAACTCTTTT-CTGGTTGCAAAATGATTGTAAATCTAGTTTCACAGCCACTAAA----GTGTGGCTGCTGAAAGAAAAAGGGTGACGATTGAACTAAAATAGGTTTGTCCCTTTAAGCAAGCCATTCATACCCTTTTTCAAAGCCATTGCTATAGGATCTGGAGAGTAAATTAAGCTGTCTCTG-AAGAGCTAGTTTTAGCCATTTT i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 976830 839 + 1238772 I a score=50548.000000 s hg38.chr2_KI270769v1_alt 72630 5 + 120616 ACCTG s panTro5.chr2A 3534422 5 + 111504155 ACCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3395174 5 + 114371477 ACCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273011 5 + 637652 ACCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3068946 5 + 81552678 ACCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332475 5 + 108979918 CCCTG i rheMac8.chr13 C 0 I 7 s macFas5.chr13 5043615 5 - 111193037 CCCTG i macFas5.chr13 C 0 I 7 s macNem1.NW_012011978v1 3436279 5 + 3644372 CCCTG i macNem1.NW_012011978v1 C 0 I 7 s cerAty1.NW_012000820v1 3391491 5 - 10304083 CCCTG i cerAty1.NW_012000820v1 C 0 I 7 s chlSab2.chr14 3487397 5 - 107702431 CCCTG i chlSab2.chr14 C 0 I 13 s manLeu1.NW_012104432v1 1024395 5 + 1565135 CCCTG i manLeu1.NW_012104432v1 C 0 I 7 s colAng1.NW_012118821v1 3388924 5 - 13651311 CCCTG i colAng1.NW_012118821v1 C 0 I 7 s calJac3.chr14 3480486 5 - 108792865 CCCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3125327 5 - 7082604 CCCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 610610 5 + 5243153 CCCTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3354128 5 + 7587287 CCCTG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2557923 5 + 5252280 CCTTG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91429702 4 - 120129022 -CCAG i mm10.chr12 C 0 I 1 s canFam3.chr17 2054774 4 + 64289059 CTTT- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 590699 5 + 2232271 CCCTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2665370 520 - 159902609 I e proCoq1.NW_012151163v1 976830 839 + 1238772 I a score=166004.000000 s hg38.chr2_KI270769v1_alt 72635 51 + 120616 TGAAGGGCTGT--TTCCTCT----TCAGTAAATAAA----GTCATTAAGTAACCGTCAACC s panTro5.chr2A 3534427 53 + 111504155 TGAAGGGCTGTGTTTCCTCT----TCAGTATATAAA----GTCATTAAGTAACCGTCAACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3395179 53 + 114371477 TGAAGGGCTGTGTTTCCTCT----TCAGTATATAAA----GTCATTAAGTAACCGTCAACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273016 53 + 637652 TGAAGGGCTGTGTTTCCTCT----TCAGTAAATAAA----GTCATGAAGTAACAGTCAACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3068951 53 + 81552678 AAAAGGGCTGTGTTTCCTCT----TCAGTAAATAAA----GTCATTAAGTAACAGTCAACC i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3480491 53 - 108792865 AAAAGGGCTGTGTCCCCTCTATCTTCAG----TCAA----GGCATTGAGTAACTCTCAGCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3125332 57 - 7082604 AAAAGGGCTGTGTCCCCTCTATCGTCAGTAAATAAA----GTCACTGAATAACGGTCAACC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 610615 57 + 5243153 AAAAGGGCTGTGTCTCCTCTGTCTTCAGTAAATGAA----GTCATTGAATAACAGTCAACC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3354133 57 + 7587287 AAAAGGGCTGTGTCTCCTCTATCTTCAGTAAATAAA----GTCATTGAATAACAGTCAACC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2557928 45 + 5252280 -AAGGAGCTTTATTTTCTCCAT--CCAGTAAATAAA-------------CAATTGTCTCTC i otoGar3.GL873658 C 0 I 226 s mm10.chr12 91429707 38 - 120129022 ------------TTCCC-------AGAATGAGTGAT----TTCATTGACTAACAGCCAACT i mm10.chr12 I 1 I 14 s canFam3.chr17 2054778 61 + 64289059 TAAGAGGCCGTGTTCCCTTCACTTCCAGTAAATAAACCATTTCAGGTAATGACAGTCCACT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 590704 57 + 2232271 AAAGTGGCTGTTTTTCCTCCATTGCCaataaataat----ttcattaaataataatcaatt i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2665370 520 - 159902609 I e proCoq1.NW_012151163v1 976830 839 + 1238772 I e colAng1.NW_012118821v1 3388929 7 - 13651311 I e manLeu1.NW_012104432v1 1024400 7 + 1565135 I e chlSab2.chr14 3487402 13 - 107702431 I e cerAty1.NW_012000820v1 3391496 7 - 10304083 I e macNem1.NW_012011978v1 3436284 7 + 3644372 I e macFas5.chr13 5043620 7 - 111193037 I e rheMac8.chr13 3332480 7 + 108979918 I a score=138457.000000 s hg38.chr2_KI270769v1_alt 72686 49 + 120616 TAAGGAAACTTTGTAACACAATCCCAAATCCTCATCTGCTGTA-TTGACG s panTro5.chr2A 3534480 49 + 111504155 TAAGGAAACTTTGTAACACGATCCCAAATCCTCATCTGCTGTA-TTGACG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3395232 49 + 114371477 TAAGGAAACTTTGTAACACGATCCCAAATCCTCATCTGCTGTA-TTGACG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273069 49 + 637652 TAAGGAAACTTTGTAACACAATCCCAAATCCTCATCTGCTGTA-TTGACG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069004 50 + 81552678 TAAGGAAACTTTCTAACACAATCCCAAATCCTCATCTGGTTTATTTGACG i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3480544 48 - 108792865 TGAGGAAACTT--TGACACAGTCCCAGTTCCTCGTCTGGTTTACTTGATG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3125389 50 - 7082604 TGAGGAAACTTTCTGACACAGTCCCAGTTCATCGTCTGGTTTACTTGATG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 610672 50 + 5243153 TGAGGAAACTTTCTGACACAGTCCCAGTTCCTCGTCTGGTTTACTTGATG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3354190 50 + 7587287 TGAGGAAACTTTCTGACGCAGTCCCAGTTCCTCGTCTGCTTTACTTGACG i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91429759 45 - 120129022 ----GACAGCCCTGAACACTCCCTCTAACCGCCCCCAGGCTTG-TTGACA i mm10.chr12 I 14 I 275 s canFam3.chr17 2054839 43 + 64289059 TAGGGATGCTTTCCAACACACTCC-------TGCTCTGCCTCATGTGATA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 590761 43 + 2232271 taaaGAAGCTCTCTAACACAGTTC-------TGCTCTGGTTTATTTGATG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2665370 520 - 159902609 I e proCoq1.NW_012151163v1 976830 839 + 1238772 I e otoGar3.GL873658 2557973 226 + 5252280 I e colAng1.NW_012118821v1 3388929 7 - 13651311 I e manLeu1.NW_012104432v1 1024400 7 + 1565135 I e chlSab2.chr14 3487402 13 - 107702431 I e cerAty1.NW_012000820v1 3391496 7 - 10304083 I e macNem1.NW_012011978v1 3436284 7 + 3644372 I e macFas5.chr13 5043620 7 - 111193037 I e rheMac8.chr13 3332480 7 + 108979918 I a score=201297.000000 s hg38.chr2_KI270769v1_alt 72735 101 + 120616 ATGGGCCCCCTGAAGTGCCCCAGAATTCTTCC--CCCAA--CTGCAGCCCGGACA-----------CACA-GAC--ACGTGTCATGTTCACACCTGAGGGACTGGCGAGCGCT-ACTG-TT s panTro5.chr2A 3534529 101 + 111504155 ATGGGCCCCCTGAAGTGCCCCAGAATTCTTCC--CCCGA--CTGCAGCCCAGACA-----------CACA-GAC--ACGTGTCCTGTTCACACCTGAGGGACTGGCGAGCGCT-ACTG-TC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3395281 101 + 114371477 ATGGGCCCCCTGAAGTGCCCCAGAATTCTTCC--CCCGA--CTGCAGCCCGGACA-----------CACA-GAC--ACGTGTCCTGTTCACACCTGAGGGACTGGCGAGCGCT-ACTG-TC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273118 101 + 637652 ATGGGCCCCCTGAAGTGCCCCAGAATTCTTCC--CCTGA--CTGCAGCCTGGACA-----------CACA-GAC--ACGTGTCCTGTTCACACCTGAGGGACTGGCAAGCGCT-ACTG-TC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069054 112 + 81552678 ATGGGCTCCTTGAAATGCACCAGAATTCTTCC--CCCGA--CTGCAGCCGGGACACACAGACACATCACA-GAC--ACGTGTCCTGTTCACACCTGAGGGACTGGTGAGCGCT-ACTG-TC i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3480592 91 - 108792865 ATGGGCTCCTTGAAGTCTGCCAGGATTCTTT---CCCT---CTGCAGCCTGGACT-----------CACA-----------TCCTGCTCACACCTGCGGGACTGGCGAGCACT-GCTG-TC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3125439 91 - 7082604 ATGGGTTCCTTGAAGGCTGCCAGGATTCTTTC--CCCT---CTGACGCCTGGACT-----------CACA-----------TCCTGCCCACACCTGC-AGACTGGCGAGCACT-GGTG-TC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 610722 92 + 5243153 ATGGGCTCCTTGAAGTC-ACCAGGATTCTTTC--CCCT---CTGCAGCCTGGACT-----------CACA-----------TCCTGCCCACACCTGCAGGACTGGCGAGCACT-GCTGTTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3354240 92 + 7587287 ATGGGCTCCTTGAAGTTTGTCAGGATTCCTTC--CCCT---CTGCAGCCTGGACT-----------CACA-----------TCCTGCTCACACCTGCGGGACTGGCGCGCACT-GCTG-TC i aotNan1.NW_018509326v1 C 0 C 0 s canFam3.chr17 2054882 81 + 64289059 AGAAGCTCCTTGAG------------CCCGTC--CCCAAGGCTGCAGCT---GCT-----------CCCATGCC--ACG--TCCCGTCCAGGCA-GCAGGA---GCGGGCAC---CTG-TC i canFam3.chr17 C 0 I 6 s dasNov3.JH580157 590804 105 + 2232271 CTAAGCTCCTTGAAACATGTCAAAATGCATTCCACCTGG--TTACTGCTGAGCCC-----------CATG-GGCGGACGT-TACTGATCAAGCCTAAGGGACTCACCACCCCTGACCG-TG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2665370 520 - 159902609 I e mm10.chr12 91429804 275 - 120129022 I e proCoq1.NW_012151163v1 976830 839 + 1238772 I e otoGar3.GL873658 2557973 226 + 5252280 I e colAng1.NW_012118821v1 3388929 7 - 13651311 I e manLeu1.NW_012104432v1 1024400 7 + 1565135 I e chlSab2.chr14 3487402 13 - 107702431 I e cerAty1.NW_012000820v1 3391496 7 - 10304083 I e macNem1.NW_012011978v1 3436284 7 + 3644372 I e macFas5.chr13 5043620 7 - 111193037 I e rheMac8.chr13 3332480 7 + 108979918 I a score=445774.000000 s hg38.chr2_KI270769v1_alt 72836 171 + 120616 GCTGAGCTGGTGGGAGTGGCTGCC-GGCGGGTGCAG--------------------------GGGCCCCCGAGATCC--CTTC--TCTGCCGCGCCT--GCCC-CC-GGCCTGGAATCCAGCTTCCTCTCACACGGCTCCCAGGCCTGTGCAC---------------GTG----------CTCTTTGGGAAGAGCCATG-CCT-----------------------------AAAGTAAC--TTCCCAT-------CAAAGAGCATGGC s panTro5.chr2A 3534630 169 + 111504155 GCTGAGCTGGTGGGAGTGGCTGCC-GGCGGGTGCAG--------------------------GGGCCCCCAAGATCC--CTTC--TCTGCCGC--CT--GCCC-CC-GGCCTGGAATCCAGCTTCCTCTCACACGGCTCCCAGGCCTGTGCAC---------------GTG----------CTTTTTCGGAAGAGCCATG-CCC-----------------------------AAAGTAAC--TTCCCAT-------CAAGGAGCATGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3395382 169 + 114371477 GCTGAGCTGGTGGGAGTGGCTGCC-GGCGGGTGCAG--------------------------GGGCCCCCAAGATCC--CTTC--TCTGCCGC--CT--GCCC-CC-GGCCTGGAATCCAGCTTCCTCTCACACGGCTCCCAGGCCTGTGCAC---------------GTG----------CTCTTTCGGAAGAGCCATG-CCC-----------------------------AAAGTAAC--TTCCCAT-------CAAGGAGCATGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273219 169 + 637652 GCTGAGCTGGTGGGAGTGGCTGCC-GGCGGGTGCAG--------------------------GGACCCCCGAGATCC--CTTC--TCTGCCGC--CT--GCCC-CC-GGCCTGGAATCCAGCTTCCTCTCACACGGCTCCCAGGCCTCTGCAT---------------CTG----------CTCTTTCGGAAGAGCCATG-CCT-----------------------------AAAGTAAC--TTCCCAT-------CAAGGAGCATGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069166 170 + 81552678 ACTGAGCTGGTGGGAGTGGCTGCC-GGAAGGTACAG--------------------------GGGCCCCCGAGATCC--CTTC--TCTGCCAC--CT--GCCC-CCTGGCCTGGAATCCAGCTTCCTCTCACATGGCTCCCAGGCCTGTGCAT---------------CTG----------CTCTTCCGGAAGAGCCATG-CCT-----------------------------AAAGTAAC--TTCCCAT-------CAAGTATCATGGC i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3480683 170 - 108792865 GCTGAGCTGGTGGGAGTGGCTGCC-GGCTGGTGTGG--------------------------GGCCCCCCGAGATAC--CCTC--TCTGCCAC--CT--GCCCTCC-GGCCTGGAATCCAGCTTC--CTCAAATGCATCCCAACCCCGTGCAC---------------CCA----------CTCTTCTGGAAGAGCCATG-CCT-----------------------------AAAATAACTTTTCCCAT-------CAAGGATCATGGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3125530 167 - 7082604 ACTGAGCTGGTGGGAGTGGCTGCC-AGCTGGTGCGG--------------------------G--CCCCCGAGATCC--CCTC--TCTGCCAC--CT--GCCC-CC-GGCCTGGAATCCAGCTTC--CTCACGTGGCTCCCAACCCCGTGCAG---------------CCA----------CTCTTCCAGAAGAGCCATG-CCT-----------------------------AAAATAACTTTTCCCAT-------CAAGGATCATGGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 610814 169 + 5243153 GCTGAGCTGGTGGGAGTGGCTGCC-GGCCGGTGCGG--------------------------GG-CCCCCGAGATCC--CCTC--TCTGCCAC--CT--GCCCCCC-AGCCTGGAATCCAGCCTC--CTCACATGGCTCCCAACCCCCTGCAC---------------CTG----------CTCTTTCGGAAGAGCCATG-CCT-----------------------------AAAATAACTTTTCCCAT-------CAAGGATCATGGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3354332 168 + 7587287 GCTGAGCTGGTGGGAGTGGCTGCC-AGCTGGTGTGG--------------------------GG-CCCCCGAGATCC--CCTC--TCTGCCAC--CT--GCCC-CC-GGCCTGGAATCCAACTTC--CTCACATGGCTCCCAACCCCGTGCAC---------------CCG----------CTTTTCCAGAAGAGCCATG-CCT-----------------------------AAAATAACTTTTCCCTT-------CAAGGATCATGGC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2558199 135 + 5252280 GTTGGCCTTGAGGGAGTAG----------------------------------------------------------------------------CT--GCCCATC-GGCCGAAAGTTCAGCTTT--CCCACATGGTCCC--AGCCTGTGCAT------TACCCAGAAGTA----------TGCTCCTGGGAGACCAGTGTTTT-----------------------------AAAATAGCCTTTCCCAT-------AAAAGATCATTGT i otoGar3.GL873658 I 226 C 0 s canFam3.chr17 2054969 154 + 64289059 GCCGACCTCGTGGCGG-------------------------------------------------CCCCGCAGCCCCTGCTCC--TCTGCGGC--CT--GACCTCT-TGCCAGGAAGCCAGCTTT--CCCACGTGCTTCCCACGCCTGTGGCT---------------CTGCCCTGGTTTACTCTCCCAGGAGACTCGTG-------------------------------------------TTTCCACAGATCCGCGGGGATCATTGC i canFam3.chr17 I 6 C 0 s dasNov3.JH580157 590909 236 + 2232271 ACCGCCCTCCAGGAGCAGGTTTCCAGGCTGCTGCAGCCCTGGCCTGCGTCCACATTACAGGAGGCTCACCCCTGTCC--CTTCCTTTTGTTGT--CTTATCCC-CT-TGCCTAGAATCCAGCTTT--CTCACATAGTTCC------TGTGCGTAGCGTCTACTCAGTAATA----------CTCTACTGGAAGAGCAGCA-TTTTAGCAGATCAACTGTTAAAAAAGAAAAGAAAAACAACT-CTTCCTT-------CAAGGCTAATTC- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2665370 520 - 159902609 I e mm10.chr12 91429804 275 - 120129022 I e proCoq1.NW_012151163v1 976830 839 + 1238772 I e colAng1.NW_012118821v1 3388929 7 - 13651311 I e manLeu1.NW_012104432v1 1024400 7 + 1565135 I e chlSab2.chr14 3487402 13 - 107702431 I e cerAty1.NW_012000820v1 3391496 7 - 10304083 I e macNem1.NW_012011978v1 3436284 7 + 3644372 I e macFas5.chr13 5043620 7 - 111193037 I e rheMac8.chr13 3332480 7 + 108979918 I a score=111673.000000 s hg38.chr2_KI270769v1_alt 73007 33 + 120616 TTGGTTTCGT-AAAAACCTGTCTTTTGTCATACT- s panTro5.chr2A 3534799 33 + 111504155 TTGGTTTCGT-AAAAACCTGTCTTTTGTCATACT- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3395551 33 + 114371477 TTGGTTTCGT-AAAAACCTGTCTTTTGTCATACT- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273388 33 + 637652 TTGGTTTCGT-AAAAACCTGTCTTTTGTCATACT- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069336 33 + 81552678 TTGGTTTTTT-AAAAACCTGTCTTTTGTCATACT- i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3480853 34 - 108792865 TTGGTTTTTTAAAAAACCTGTCCTTTGTCATGTT- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3125697 33 - 7082604 TTGGTTTTTT-AAAAACCTGTCCTTTGTCATGTT- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 610983 33 + 5243153 TTGGTTTTTT-AAAAACCTGTCCTTTGTCATGTT- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3354500 33 + 7587287 TTGGTTTTTT-AAAAACCTGTCCTTTGTCATGTT- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2558334 31 + 5252280 TTGGTCTTAT---AAACCTATCCTTTGCTGGATC- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91430079 32 - 120129022 TGGGTATATT-TATAGCCTGTTTCTTTTC-TGTT- i mm10.chr12 I 275 C 0 s canFam3.chr17 2055123 30 + 64289059 TTGGCTTTTT---AAAGCTGTTCTTT-CCATCTC- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 591145 31 + 2232271 TCAGATTTGG---AAACCTGCCCTTT-CCAGCCTC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2665370 520 - 159902609 I e proCoq1.NW_012151163v1 976830 839 + 1238772 I e colAng1.NW_012118821v1 3388929 7 - 13651311 I e manLeu1.NW_012104432v1 1024400 7 + 1565135 I e chlSab2.chr14 3487402 13 - 107702431 I e cerAty1.NW_012000820v1 3391496 7 - 10304083 I e macNem1.NW_012011978v1 3436284 7 + 3644372 I e macFas5.chr13 5043620 7 - 111193037 I e rheMac8.chr13 3332480 7 + 108979918 I a score=149102.000000 s hg38.chr2_KI270769v1_alt 73040 42 + 120616 AGATTATCTTCAGAAACACTGACCCCTGGCCCT-GAGCA---CTG--A s panTro5.chr2A 3534832 42 + 111504155 AGATTATCTTCAGAAACACTGACCTGTGGCCCT-GAGCA---CTG--A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3395584 42 + 114371477 AGATTATCTTCAGAAACACTGACCTGTGGCCCT-GAGCA---CTG--A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273421 42 + 637652 AGGTTATCTTCAGAAACACTGATCCCTGGCCCT-GAGCA---CTG--A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069369 44 + 81552678 AGATTATCTTCAGAAACACTGACCCCTGGCCCC-GAGCA---CTGAAA i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3480887 37 - 108792865 AGATTATCTTCAGAA--AC--ACCTCTGGCCCC-GAGCA---CTC--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3125730 42 - 7082604 AGATTATCTTCAGAA-CACTGACCCCTGGCCCC-GAGCA---ATC-AA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611016 42 + 5243153 AGATTATCTTCAGAAACACTGACCCCTGGCCCC-AAGCA---CTC--A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3354533 42 + 7587287 AGATTATCTTCAGAAACACTGACCCCTGGCCAC-GAGCA---CTC--A i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 977669 42 + 1238772 AGATCATCTTCGGAAACCTTGACCCCTGGCCCT-GGGCA---CTG--A i proCoq1.NW_012151163v1 I 839 I 407 s otoGar3.GL873658 2558365 23 + 5252280 AGGTCATCTC-------------------TCCT-GGGCA---CTG--A i otoGar3.GL873658 C 0 I 2 s mm10.chr12 91430111 46 - 120129022 GGGCCATTCTCAGTAGCATGTACCCTTGACCCTAGGGCAAGTTTG--A i mm10.chr12 C 0 C 0 s canFam3.chr17 2055153 37 + 64289059 AAATTATCTTTGGAA---TTCACCC--GGCCTC-AAGGG---CTG--A i canFam3.chr17 C 0 I 2 s dasNov3.JH580157 591176 42 + 2232271 ACATTATCTACAGAAACTTAGATTCCTGACCTT-GAGGA---GGG--A i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2665370 520 - 159902609 I e colAng1.NW_012118821v1 3388929 7 - 13651311 I e manLeu1.NW_012104432v1 1024400 7 + 1565135 I e chlSab2.chr14 3487402 13 - 107702431 I e cerAty1.NW_012000820v1 3391496 7 - 10304083 I e macNem1.NW_012011978v1 3436284 7 + 3644372 I e macFas5.chr13 5043620 7 - 111193037 I e rheMac8.chr13 3332480 7 + 108979918 I a score=248527.000000 s hg38.chr2_KI270769v1_alt 73082 124 + 120616 -----AAGAGCGGTTAGGGTGATGCGGCTGG---C------------------------CA--------CGGCATCGCCCACTAGCAGTGAGTGCT--------GCGC----CCCC-----------ACCACGCCCCCA--CCCTGCGCTCTCTGTGGT-GGCCGCCTCAGCCTGGAGCATCAGTGGCGT s panTro5.chr2A 3534874 124 + 111504155 -----AAGAGTGGTTAGGGTGATGCGGCTGG---T------------------------CA--------CGGCATCGCCCACTAGCAGTGAGTGCT--------GCAC----CCCC-----------ACCACGCCCCCA--CCCTGCGCTCTCTGTGGT-GGCCGCCTCAGCCTGGAGCGTCAGTGGCGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3395626 124 + 114371477 -----AAGAGTGGTTAGGGTGATGCGGCTGG---T------------------------CA--------CGGCATCGCCCACTAGCAGTGAGTGCT--------GCAC----CCCC-----------ACCACGCCCCCA--CCCTGCGCTCTCTGTGGT-GGCCGCCTCAGCCTGGAGCGTCAGTGGCGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273463 124 + 637652 -----AAGAGCGGTTAGGGTGATGCGGCTGG---C------------------------CA--------CGGCATCGCCCACTAGCAGTGAGTGCT--------GCGC----CCCC-----------ACCACGCCCCCA--CCCTGCGCTCTCTGTGGT-GGCCGCCTCAGCCTGGAGCATCAGTGGCGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069413 124 + 81552678 -----AAGAGTGGTTAGGGTGATGCAGCTGG---C------------------------CA--------CGGCATCGCCCACTAGCAGTGAGTGCT--------GCAC----CCCC-----------ACCATGCCCCCA--CCCCGCGCTCTCTGTGGT-GGCCGCCTCAGCCTGGAGCATCAGTAGCAT i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3480924 120 - 108792865 ------AGAGTGGTT-GGGGAGTGCGGCTGG---C------------------------CA--------CAGGGTCACCCACTAGCAGCAGGGGCT--------GCA-----CCCC-----------ACCATGGCCCG---CCCTGTGCACTCTTTGGT-GGCTGTCTCAGCCTGGAGCATCAGCAGTGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3125772 121 - 7082604 -----AAGAGTGGTT-GGGGGGTGTGGCTGG---C------------------------CA--------CAGGGTCACCCACTAGCAGCAGGTGCT--------GCA-----CCCC-----------ACCGTGGCCCG---CCCCGCGCACTCTGCGGT-GGCCGCCTCAGGCTGGAGCATCAGCAGTGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611058 107 + 5243153 -----AAGAGTGGTTAGGGGGGTGCAGCTGG---C------------------------CA--------CAGGGTTGCCCACTAGCAGCAGGTACT--------GCA-----CCCC-----------GCCATGGCCCG---CCCTGTGCG----------------CTCAGCCTGGAGCATCAGCAGTGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3354575 122 + 7587287 -----AAGAGTGGTT-GGGGGGTGCGGCTGG---C------------------------CA--------CAGGGTCACCCACTAGCAGCAGGTGCT--------GCA-----CCCC-----------ACCACGGCCCGT--CCCCGCGCACTCTGCAGT-GGCCGCCTCAGCCTGGAGCATCAGCAGTCG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2558390 79 + 5252280 -----CAGACTTGCTAAGGCAGTGACACTGC---C------------------------CA--------CAGCATCTCTCTCTAGGAGGGGGCAC-----------------CCTG-----------ACCA-------------------------------------------GGAGCATTGTTAGGGT i otoGar3.GL873658 I 2 C 0 s mm10.chr12 91430157 122 - 120129022 ---------------AAGGCAGCAATGCCAA---T------------------------CAAAAAAATCTAAGATC-----CTAGCAGGGCTTACTCCTG--AGGCATACTGACCC-----------TCCATGCCATGC--ACCCTGGCCCTCCATG---AGCTG--TCCATCAGAAGCATCATGAGCA- i mm10.chr12 C 0 C 0 s canFam3.chr17 2055192 125 + 64289059 -----CAGAGCCACG-AGGCAGTGACATTGGCTTC------------------------CA--------TGGACTTGCCAGCCGGAAGTGGGCACTCA------GCC-----GCCC-----------TCCACACCCTGG--ATCTG-GCTCTCTGCGGC-GCCAG-CTCAGCTGGAAGCATCAGTAGAGT i canFam3.chr17 I 2 I 6 s dasNov3.JH580157 591218 175 + 2232271 AACAGAAAATTTGTTAAAATAATGACACTGG---CATCTGGGCCTCGGTGGCGCCTTCGTA--------AGGGATGGTCTGCAGGCAGCTGCTGCTAGAAGCAAGCAC----CCCCGCGCCCTCCAGACCACCTTCCCACCCCCCAGGCCCTCAGGAGTGGGTCCTCTTAGCTGAGAGTGTAATTAGGGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2665370 520 - 159902609 I e proCoq1.NW_012151163v1 977711 407 + 1238772 I e colAng1.NW_012118821v1 3388929 7 - 13651311 I e manLeu1.NW_012104432v1 1024400 7 + 1565135 I e chlSab2.chr14 3487402 13 - 107702431 I e cerAty1.NW_012000820v1 3391496 7 - 10304083 I e macNem1.NW_012011978v1 3436284 7 + 3644372 I e macFas5.chr13 5043620 7 - 111193037 I e rheMac8.chr13 3332480 7 + 108979918 I a score=229603.000000 s hg38.chr2_KI270769v1_alt 73206 61 + 120616 ----------------GAG---TGGGGCA-------------------------C-------TGG----AATGACCCAGTGAC--ACTGCCG-GGCTGATAACAAGAAAGTCAAAGCCT s panTro5.chr2A 3534998 61 + 111504155 ----------------GAG---TGGGGCA-------------------------C-------TGG----AATGACCCAGTGAC--ACTGCCG-GGCTGATAACAAGAAAGTCAAAGCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3395750 61 + 114371477 ----------------GAG---TGGGGCA-------------------------C-------TGG----AATGACCCAGTGAC--ACTGCCG-GGCTGATAACAAGAAAGTCAAAGCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273587 61 + 637652 ----------------GAG---TGGGGCA-------------------------C-------TGG----AATGACCCAGTGAC--ACTGCTG-GGCTGATAACAAGAAAGTCAAAGCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069537 61 + 81552678 ----------------GAG---TGGGGCA-------------------------C-------TGG----AATGACCCAGTGAC--ACTGCTG-GGCTGATAAGAAGGAAGTCAAGGCCT i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3481044 61 - 108792865 ----------------GAG---TGCAGCA-------------------------C-------GGG----AATGACCCAGTGAC--ACTGCCG-GGCTAATGACAGGAAAGTCAAAGCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3125893 59 - 7082604 ----------------GAG---TGCGGCA-------------------------C-------GGG----AAGGACCCAGTGAC--G--GCCG-GGCTAACAACAAGAAAGTCAGAGCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611165 61 + 5243153 ----------------GAG---TGCAGCA-------------------------T-------GGG----AATGACCCAGTGAC--ACTGCCG-GGCTAATAACAAGAAGGTCAAAGCCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3354697 61 + 7587287 ----------------GAG---TGCGGCA-------------------------C-------GGG----AATGACCCAGTGAC--ACTGCCG-GGCTAATATCAAGAAAGTCAAAGCCC i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2665890 61 - 159902609 ----------------GAG---TGAGGCA-------------------------C-------AGG----CGTGACCCAGTGAC--GCTGCAG-GGCTAATAACAGGAAAGCCAAAGCCT i micMur3.chr8 I 520 C 0 s otoGar3.GL873658 2558469 58 + 5252280 ----------------GAG---GGAGACA-------------------------C-------AAG----CTTGACCCACCGAC--GCTTCAG-GG---ACAACAAGAAAGCCAAAGTCT i otoGar3.GL873658 C 0 I 419 s mm10.chr12 91430279 61 - 120129022 ----------------GGG---TGGAGCC-------------------------T-------AGGTCACGATGGCCT-GTGATCAGATGCAG-TACTGTGACTCGG-----CACAGCCT i mm10.chr12 C 0 C 0 s canFam3.chr17 2055323 82 + 64289059 ----------------GAG---TGACACACAAGCCAAGATTCGGGGCACAAGGGC-------TGG----CACGCCTCAGTGAC--ACTGCAG-CACT---AACAAGAACGGCAGGTCT- i canFam3.chr17 I 6 C 0 s dasNov3.JH580157 591393 88 + 2232271 GATGAAGCCCACGGCAGAGGTTTGGGGTA-------------------------CGCACACTGGG----TGTGAGCCAGTGAC--ATTTCGGCTACTTGAAAAAAAAAAATCAAAGTTT i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 977711 407 + 1238772 I e colAng1.NW_012118821v1 3388929 7 - 13651311 I e manLeu1.NW_012104432v1 1024400 7 + 1565135 I e chlSab2.chr14 3487402 13 - 107702431 I e cerAty1.NW_012000820v1 3391496 7 - 10304083 I e macNem1.NW_012011978v1 3436284 7 + 3644372 I e macFas5.chr13 5043620 7 - 111193037 I e rheMac8.chr13 3332480 7 + 108979918 I a score=107916.000000 s hg38.chr2_KI270769v1_alt 73267 22 + 120616 GCCTTTTGTTTACTTGAAACCA s panTro5.chr2A 3535059 22 + 111504155 GCCTTTTGTTTACTTGAAACCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3395811 22 + 114371477 GCCTTTTGTTTACTTGAAACCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273648 22 + 637652 GCCTTTTGTTTACTTGAAACCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069598 22 + 81552678 GCCTTTTGTTTACTTGAAACCA i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3481105 22 - 108792865 ACCTTTTGTCTACTTGAAACCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3125952 22 - 7082604 GACTTTTGTCTACGGGAAACTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611226 22 + 5243153 ACCTTTTGTCTACTTGAAACCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3354758 22 + 7587287 GCCTTTTGTCTACTTGAAACCA i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2665951 22 - 159902609 GCCTTTGGTTCACCTGAAACCA i micMur3.chr8 C 0 I 692 s mm10.chr12 91430340 21 - 120129022 GCCCTCTGCTCG-GTGAAATAA i mm10.chr12 C 0 C 0 s canFam3.chr17 2055405 22 + 64289059 GCCTTCTGTTCGCTCTAAACCA i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 591481 22 + 2232271 GCCTTTTGTTCACTAAAAATCA i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 977711 407 + 1238772 I e otoGar3.GL873658 2558527 419 + 5252280 I e colAng1.NW_012118821v1 3388929 7 - 13651311 I e manLeu1.NW_012104432v1 1024400 7 + 1565135 I e chlSab2.chr14 3487402 13 - 107702431 I e cerAty1.NW_012000820v1 3391496 7 - 10304083 I e macNem1.NW_012011978v1 3436284 7 + 3644372 I e macFas5.chr13 5043620 7 - 111193037 I e rheMac8.chr13 3332480 7 + 108979918 I a score=303982.000000 s hg38.chr2_KI270769v1_alt 73289 119 + 120616 -AAGGT-GGGACATGTGTGGGATTAGAACAGAC-ATTGCCCAGCATGATGGGTGCTCGGAAGCCTACTT----------CCTTCCCCAGAGAAGCCTAGGGGGGCAGCTGCTACTTTTCCCCGAGCTGGTGC s panTro5.chr2A 3535081 119 + 111504155 -AAGGT-GGGACATGTGTGGGATTAGAACAGAC-ATTGCCTGGCATGATGGGTGCTTGGAAGCCTACTT----------CCTTCCCCAGAGAAGCCTAGGGGGGCAGCTGCTACTTTTCCCCGAGCTGGTGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3395833 119 + 114371477 -AAGGT-GGGACATGTGTGGGATTAGAACAGAC-ATTGCCTGGCATGATGGGTGCTTGGAAGCCTACTT----------CCTTCCCCAGAGAAGCCTAGGGGGGCAGCTGCTACTTTTCCCCGAGCTGGTGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273670 119 + 637652 -AAGGC-GGGACATGTGTGGGATTAGAACAGAC-ATTGCCCAGCATGATGGGTGCTCGGAAGCCTACTT----------CCTTCCCCAGAGAAGCCTAGGGGGGCAGCTGCTACTTTTCCCCGAGCTGGTGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069620 119 + 81552678 -AAGGT-GGGACGTGTGTGGGATTAGAACAGAC-ATTGCCCAGCATGATGGGTGCTCGGAAGCCCACTT----------CCTTCCCCAGAGAAGCCTAGAGGGGCAGCTGCTGCTTTTCCCTGAGCTGGTGC i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3481127 120 - 108792865 -AAGGTGGGGGCATGTGTGGGAGTAGAACACAC-ACTGCTCAGCATGGTGGGTGCTCGGAAGCCCACTA----------CCTTCCCCAGAGAAGCCTAGGGGGGTAGCTACTGCTTATCCCCGAGCTGGGGC i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3125974 120 - 7082604 -AAGGAGGGGGCGTGTGTGGGATTAGAACACAC-ACTGCTTAGTATGGTGGGTGCTCGGGAACCCACTG----------CCTTCCCCAGAGAAGCCGAGAGGGGTAGCTACTGCTTGTCCCCGAGCTGGGGC i saiBol1.JH378218 C 0 I 1 s cebCap1.NW_016107454v1 611248 118 + 5243153 -AAGGTGGGGGCATGTGTGAGATTAGA--ACAC-ACTGCTCAGTATGGTGGGTGCTCAGAAGCCCACTG----------CCTTCCCCAGAGAAGCCAAGAGGGGTAGCTACTGCTTGTCTCCAAGCTGGGGC i cebCap1.NW_016107454v1 C 0 I 1 s aotNan1.NW_018509326v1 3354780 120 + 7587287 -AAGGTCGGGGCATGTGTGGGATTAGAACACAC-ACTGCTCAGTATGGTGGGTGCTCAGAAGCCCACTA----------CCTTCCCCAGAGAAGCCTAGAGGGGTAGCTACTGCTTGTCCCCAAGCTGGGGC i aotNan1.NW_018509326v1 C 0 I 1 s mm10.chr12 91430361 62 - 120129022 -AACGTAAGGGTACGTACCAGGTTGGAGGAGGA----GACCAGGATGG--------------------------------------------ACCTTAGGGG----------------CCATGGGCT----- i mm10.chr12 C 0 C 0 s canFam3.chr17 2055428 73 + 64289059 -CAGTAAGGGGTAGGTGTCGCATTACAGCA--------------------GGTGACC----------------------CCCCCCCCACAGAGGTCTGGGGGG---------------CCTGGAGCTCGTG- i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 591503 119 + 2232271 AAAGGCAGGGCTGTGTGCTAAATTAGAACAGCTAATTCCCTTGCAGGAGTCGGCCTCAGGTGCCACCTTGCAGCAGACACCTCCTCCGGAAGGGC-------------TGCCGCTGTCTCCAGCGCTGACCC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2665973 692 - 159902609 I e proCoq1.NW_012151163v1 977711 407 + 1238772 I e otoGar3.GL873658 2558527 419 + 5252280 I e colAng1.NW_012118821v1 3388929 7 - 13651311 I e manLeu1.NW_012104432v1 1024400 7 + 1565135 I e chlSab2.chr14 3487402 13 - 107702431 I e cerAty1.NW_012000820v1 3391496 7 - 10304083 I e macNem1.NW_012011978v1 3436284 7 + 3644372 I e macFas5.chr13 5043620 7 - 111193037 I e rheMac8.chr13 3332480 7 + 108979918 I a score=14723.000000 s hg38.chr2_KI270769v1_alt 73408 6 + 120616 AAGCTG s panTro5.chr2A 3535200 6 + 111504155 AAGCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3395952 6 + 114371477 AAGCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273789 6 + 637652 AAGCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069739 6 + 81552678 GAGCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332487 6 + 108979918 AAGCCG i rheMac8.chr13 I 7 C 0 s macFas5.chr13 5043627 6 - 111193037 AAGCCG i macFas5.chr13 I 7 C 0 s macNem1.NW_012011978v1 3436291 6 + 3644372 AAGCCG i macNem1.NW_012011978v1 I 7 C 0 s cerAty1.NW_012000820v1 3391503 6 - 10304083 AAGCCG i cerAty1.NW_012000820v1 I 7 C 0 s manLeu1.NW_012104432v1 1024407 6 + 1565135 AAGCCG i manLeu1.NW_012104432v1 I 7 C 0 s colAng1.NW_012118821v1 3388936 6 - 13651311 AAGCCG i colAng1.NW_012118821v1 I 7 C 0 s calJac3.chr14 3481248 5 - 108792865 AGGCA- i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3126095 5 - 7082604 AGGCA- i saiBol1.JH378218 I 1 C 0 s cebCap1.NW_016107454v1 611367 5 + 5243153 AGGCT- i cebCap1.NW_016107454v1 I 1 C 0 s aotNan1.NW_018509326v1 3354901 5 + 7587287 AGGCA- i aotNan1.NW_018509326v1 I 1 C 0 s canFam3.chr17 2055501 4 + 64289059 -GGCT- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 591622 6 + 2232271 ACGTCG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2665973 692 - 159902609 I e mm10.chr12 91430423 0 - 120129022 C e proCoq1.NW_012151163v1 977711 407 + 1238772 I e otoGar3.GL873658 2558527 419 + 5252280 I e chlSab2.chr14 3487402 13 - 107702431 I a score=1085528.000000 s hg38.chr2_KI270769v1_alt 73414 124 + 120616 GTGAGTGC-----AGCCTCTGTTGGAAAGCAGGGCTGCTC--------CCCTAAACTTCTCAGATCAGGG---CCAGCC------CAGGGTGTGCAGGCCCCACAGCTG-CATCTGGGGTGCCATGTCCGTCC-CAGCTGCAACCTCA s panTro5.chr2A 3535206 124 + 111504155 GTGAGTGC-----AGCCTCTGTTGGAAAGCAGGGCTGCTC--------CCCTAAACTTCTCAGGTCAGGA---CCAGCC------CAGGGTGTGCAGGCCCCACAGCTG-CATCTGGGGTGCCATGTCCGTCC-CAGCTGCAACCTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3395958 124 + 114371477 GTGAGTGC-----AGCCTCTGTTGGAAAGCAGGGCTGCTC--------CCCTAAACTTCTCAGGTCAGGA---CCAGCC------CAGGGTGTGCAGGCCCCACAGCTG-CATCTGGGGTGCCATGTCCGTCC-CAGCTGCAACCTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273795 124 + 637652 GTGAGTGC-----AGCCTCTGTTGGAAAGCAGGGCTGCTC--------CCCTAAACTTCTCAGATCAGGA---CCAGCC------CAGGGTATGCAGGCCCCACAGCTG-CATCTGGGGTGCCATGTCCGTCC-CAACTGCAACCTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069745 124 + 81552678 GTGAGTGC-----AGCTCCTGTTGGAAAGCAGGGCTGCTC--------CCCTAAACTTCTCAGATCAGGA---CCAGCC------CAGGGTGTGCAGGCCCTGCAGCTG-CATCTGGGGTGCCATGTCCGTCC-CAGCTGCAACCTCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332493 124 + 108979918 GTGGGTGC-----AGCCCCTGTTGGAAGGCAGGGCTGCTC--------CCCTAAACTTGTCCGATCAGGA---CCAGCC------CAGGGTGTGCAGGCCCCGCCTCTG-CATCAAGGGTGCCGTGTCCATCC-CAGCTGCAGCCTCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5043633 124 - 111193037 GTGGGTGC-----AGCCCCTGTTGGAAGGCAGGGCTGCTC--------CCCTAAACTTGTCCGATCAGGA---CCAGCC------CAGGGTGTGCAGGCCCCGCCTCTG-CATCAAGGGTGCCGTGTCCATCC-CAGCTGCAGCCTCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3436297 124 + 3644372 GTGGGTGC-----AGCCCCTGTTGGAAGGCAGGGCTGCTC--------CCCTAAACTTGTCCGATCAGGA---CCAGCC------CAGGGTGTGCAGGCCCCGCCTCTG-CATCAAGGGTGCCGTGTCCATCC-CAGCTGCAGCCTCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3391509 124 - 10304083 GTGGGTGC-----AGCCCCTGTTGGAAGGCAGGGCTGCTC--------CCCTAAACTTGTCCGATCAGGA---CCAGCC------CAGGGTGTGCAGGCCCCGCCTCTG-CATCAAGGGTGCCATGTCCATCC-CAGCTGCAGCCTCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3487415 124 - 107702431 GTGGGTGC-----AGCCCCTGTTGGAAGGCAGGGCTGCTC--------CCCTAAACTTGTCCAATCAGGA---CCAGCC------CAGGGTGTGCAGGCCCCGCCTCTG-CATCAAGGGTGCCGTGTCCATCC-CAGCTGCAGCCTCA i chlSab2.chr14 I 13 C 0 s manLeu1.NW_012104432v1 1024413 124 + 1565135 GTGGGTGC-----AGCCCCTGTTGGAAGGCAGGGCTGCTC--------CCCTAAACTTGTCCGATCAGGA---CCAGCC------CAGGGTGTGCAGGCCCCGCCTCTG-CATCAAGGGTGCCGTGTCCATCC-CAGCTGCAGCCTCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3388942 124 - 13651311 GTGGGTGC-----AGGCCCTGTTGGAAGGCAGGGCTGCTC--------CCCTAAACTTGTCCGATCAGGA---CCAGCC------CAGGGTGTGCAGGCCCCGCATCTG-CATCAAGGGTGCCATGTCCATCC-CAGCTGCAACCTCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3481253 110 - 108792865 GTGGGTGC-----AGCCTGTGTTGGAAGGTAGGGCTGCTC--------CCCTAAACTTCGCAGAGCAGGA---CCAGCC------CAGGCT--------------GCAG-CATCAGGGGTGTCACATCCATTC-CAACCTCAAGCTTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126100 124 - 7082604 GTGGGTGC-----AGCCCCTGTCGTAAGGCAGGGCTGCTC--------CCCTAAACTTCTCAGAGCGGGA---CTAGCC------CAGGCTGCACAGTCCCCGCGGCAG-CATCAGGGGTGTCACATCCATCC-CAGCCACAAGCTTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611372 118 + 5243153 GTGGGTGC-----AGCCCCTGTTGGAAGGCAGGGCTGCTC--------CCCTAAACTTCTCAGGGTGGGA---CCAGCC------CAGGCTGCACAGTCCCC---GCAG----CAGGGGTGTCATGTCCATCC-CAACCACAAGCTTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3354906 124 + 7587287 GTGGGTGC-----AGCCCCTGTTGGAAGGCGGGGCTGCTC--------CTCTAAACTTCTCAGAGCAGGA---CCAGCC------CAGGCTGCACAGGCCCCGCAGCAG-CATCAGGGGTGTCACGTCCATCC-CAACCACAAGCTTA i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91430423 64 - 120129022 -------------AGACCCTGGT---------------------------------------------------CAGCC------TGAGA---GCAGGCCCTCAAGTCG-CAC--AGGGTGGCGTGTCCGTGT-CC-------CCTCA i mm10.chr12 C 0 C 0 s canFam3.chr17 2055505 95 + 64289059 ----------------CTCAGCTGGGGGCCCCGGCCGCCC--------------------CAGGGCCACG---CCAGCCACCGAGCAGGATGCA---GCACTGCCTCCC-CACC-AGAGTGCC-------TCT-CAGC-ACATGCTCA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 591628 141 + 2232271 -CCGGCGCTGCCGAGCCTCCATGGGCGGCAGGTGCCGCCCACCCCCTTCACTAAATGCTTCAAACCCGGAACCCGGACT------CAGCGAAGAGGAGCCCTGGAGCTGCCAGCGAGGATGTCACATTCCTCCTCAGCTGCAGCGTCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2665973 692 - 159902609 I e proCoq1.NW_012151163v1 977711 407 + 1238772 I e otoGar3.GL873658 2558527 419 + 5252280 I a score=493873.000000 s hg38.chr2_KI270769v1_alt 73538 62 + 120616 GCC---GCCCCGAGTGCC-----------CCCATGCCAGGTCACAAAGCCCTCCCCTGTGTGAG--GGAGCTcaca--ca s panTro5.chr2A 3535330 62 + 111504155 GCC---GCCCCGAGTGCC-----------CCCATGCCAGGTCACAAAGCCCTCCCCTGTGTGAG--GGAGCTcaca--ca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396082 62 + 114371477 GCC---GCCCCGAGTGCC-----------CCCATGCCAGGTCACAAAGCCCTCCCCTGTGTGAG--GGAGCTcaca--ca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273919 62 + 637652 GCC---GCCCCGAGTGCC-----------CCCATGCCAGGTCACAAAGCCCTCCCCTGTGTGAG--GGAgctcaca--ca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069869 62 + 81552678 GCC---GCCCTGAGTGCC-----------CCCATGCCAGGTCACAAAGCCCTCCCCTGTGTGAG--GGAGCTCACA--CA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332617 62 + 108979918 GCC---ACCCCGAGTGCC-----------CCCATGCCAGGTCACAAAGCCCTCCTCTGTGCAAG--GGAactcaca--ca i rheMac8.chr13 C 0 I 2 s macFas5.chr13 5043757 62 - 111193037 GCC---ACCCCGAGTGCC-----------CCCATGCCAGGTCACAAAGCCCTCCTCTGTGCAAG--GGAactcaca--ca i macFas5.chr13 C 0 I 2 s macNem1.NW_012011978v1 3436421 62 + 3644372 GCC---ACCCCGAGTGCC-----------CCCATGCCAGGTCACAAAGCCCTCCTCTGTGCAAG--GGAactcaca--ca i macNem1.NW_012011978v1 C 0 I 2 s cerAty1.NW_012000820v1 3391633 62 - 10304083 GCC---ACCCCGAATGCC-----------CCCATGCCAGGTCACAAAGCCCTCCTCTGTGCAAG--GGAACTcaca--ca i cerAty1.NW_012000820v1 C 0 I 2 s chlSab2.chr14 3487539 62 - 107702431 GCC---ACCCCGAGTGCC-----------CCCATGCCAGGTCACAAAGCCCTGCTCTGTGCGAG--GGAACTcaca--ca i chlSab2.chr14 C 0 I 2 s manLeu1.NW_012104432v1 1024537 62 + 1565135 GCC---ACCCCGAGTGCC-----------CCCATGCCAGGTCACAAAGCCCTCCTCTGTGCAAG--GGAACTcaca--ca i manLeu1.NW_012104432v1 C 0 I 2 s colAng1.NW_012118821v1 3389066 62 - 13651311 GCC---ACCCCGAGTGCC-----------CCCATGCCAGGTCACAAAGCCCTCCTCTGTGTGAG--GGAACTCACA--CA i colAng1.NW_012118821v1 C 0 I 216 s calJac3.chr14 3481363 54 - 108792865 GTC---------TGTGCC-----------CCTGTGCCAGGTCACGAAGCCCTCCCCTGTGCAAG--GGGGCTCTCT---- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126224 61 - 7082604 GCC---ACCCCGAGTGCC-----------CC-GTGCCAGCTCACAAAGCCCTCCTCTGTGCAAG--GGCGctctctct-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611490 60 + 5243153 GCC---ACCCCGAGTGCC-----------CCCGTAACAGGTCACAAAGCCCTCCCCTGTGCAAG--GGGGCTCTCT---- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3355030 60 + 7587287 GTC---ACCCCGAGTGCC-----------CCCGTGCCAGGTCACAAAGCCCTCCCTTGTGCAAG--GAGGCTcaca---- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2558946 56 + 5252280 GCC---ACCCCCAGCTTC-----------CCAAAACCAG--------ACCCAGCCCTAAGCAGGCAGCAGCAGCCT--CA i otoGar3.GL873658 I 419 I 3 s mm10.chr12 91430487 50 - 120129022 GCCATGACCCTGACTGCC-----------CAAAGGCT----------GCCTTCTCCCCTG------ACACCTCATG--G- i mm10.chr12 C 0 C 0 s canFam3.chr17 2055600 37 + 64289059 ----------------CA-----------CCCACACCCCTGCACATACCTGCTCAGCTTGTGAG---------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 591769 69 + 2232271 ---CTTACCCCAAGGGCTGAGGAATTGGACACAGAACAGTGGGTGTAGCTGTCTTCTCTGC--G--GCGCCTCACA---- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2665973 692 - 159902609 I e proCoq1.NW_012151163v1 977711 407 + 1238772 I a score=147931.000000 s hg38.chr2_KI270769v1_alt 73600 42 + 120616 cacac----gtccacacacacacatgctcacacacac--g--ctcacact s panTro5.chr2A 3535392 46 + 111504155 cacactcacgtccacacacacacatgctctcacacac--g--ctcacact i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396144 46 + 114371477 cacactcacgtccacacacacacatgctctcacacac--g--ctcacact i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 273981 46 + 637652 cacgctcacgtccacacacacacatgctcacacacac--g--ctcacact i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069931 42 + 81552678 CAT------GTCCACACACACTCACGCTCACACACACATG--CTcacgct i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332681 44 + 108979918 ----ctcacacacacgcacacacacgctcacacacac--gctctcatgct i rheMac8.chr13 I 2 C 0 s macFas5.chr13 5043821 44 - 111193037 ----ctcacacacacgcacacacacgctcacacacac--gctctcatgct i macFas5.chr13 I 2 C 0 s macNem1.NW_012011978v1 3436485 44 + 3644372 ----ctcacacacacgcacacacatgctcacacacac--gctctcatgct i macNem1.NW_012011978v1 I 2 C 0 s cerAty1.NW_012000820v1 3391697 44 - 10304083 ----ctcacacacacgcacacacatgctcacacacat--gctcTCATGCT i cerAty1.NW_012000820v1 I 2 C 0 s chlSab2.chr14 3487603 46 - 107702431 ----cacacacacacgcacacacacgctcacacacatacgctctcatgct i chlSab2.chr14 I 2 C 0 s manLeu1.NW_012104432v1 1024601 44 + 1565135 ----ctcacacacacacacacacatgctcacacacat--gctcTCATGCT i manLeu1.NW_012104432v1 I 2 C 0 s saiBol1.JH378218 3126285 40 - 7082604 ------ctctctctctctctctctctctctctctctc--t--ctcacaca i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611550 26 + 5243153 --------------------CTcacacaaacacgcat--g--cgcacaca i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3355090 16 + 7587287 ------------------------------cacacac--a--cacacaca i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2559005 40 + 5252280 --------TCCCCAAGAGCCCAGGTGCGCACACACTC--GCCCACACACT i otoGar3.GL873658 I 3 C 0 s mm10.chr12 91430537 44 - 120129022 ----TGCATGCACACACACACACATCCACGTGCACCT--GCTGGCACAAT i mm10.chr12 C 0 C 0 s canFam3.chr17 2055637 42 + 64289059 ------Tatacgctcacacatacatgctcacacctgc--acactcacccc i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 591838 37 + 2232271 ---------GCGCGTACACGCACGTGGCCACACACAC--T--CACGCACC i dasNov3.JH580157 C 0 I 31 e micMur3.chr8 2665973 692 - 159902609 I e proCoq1.NW_012151163v1 977711 407 + 1238772 I e calJac3.chr14 3481417 0 - 108792865 C e colAng1.NW_012118821v1 3389128 216 - 13651311 I a score=23106.000000 s hg38.chr2_KI270769v1_alt 73642 8 + 120616 cat------------------------------------acaca s panTro5.chr2A 3535438 8 + 111504155 cat------------------------------------acaca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396190 8 + 114371477 cat------------------------------------acaca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274027 8 + 637652 cat------------------------------------acaca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069973 7 + 81552678 cac------------------------------------acac- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332725 8 + 108979918 cat------------------------------------acacg i rheMac8.chr13 C 0 I 1 s macFas5.chr13 5043865 8 - 111193037 cat------------------------------------acacg i macFas5.chr13 C 0 I 1 s macNem1.NW_012011978v1 3436529 8 + 3644372 cat------------------------------------acacg i macNem1.NW_012011978v1 C 0 I 1 s cerAty1.NW_012000820v1 3391741 8 - 10304083 CAT------------------------------------ACACG i cerAty1.NW_012000820v1 C 0 I 1 s chlSab2.chr14 3487649 44 - 107702431 catacacgcacgttcacacacgctcacacacacgcacacacacg i chlSab2.chr14 C 0 I 27 s manLeu1.NW_012104432v1 1024645 8 + 1565135 CAT------------------------------------ACACG i manLeu1.NW_012104432v1 C 0 I 52 s saiBol1.JH378218 3126325 8 - 7082604 cac------------------------------------acaca i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611576 8 + 5243153 cac------------------------------------acaca i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3355106 7 + 7587287 cac------------------------------------acac- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2559045 6 + 5252280 CAC------------------------------------ACA-- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91430581 8 - 120129022 GAG------------------------------------AAATA i mm10.chr12 C 0 C 0 s canFam3.chr17 2055679 8 + 64289059 tgc------------------------------------acata i canFam3.chr17 C 0 C 0 e micMur3.chr8 2665973 692 - 159902609 I e proCoq1.NW_012151163v1 977711 407 + 1238772 I e dasNov3.JH580157 591875 31 + 2232271 I e calJac3.chr14 3481417 0 - 108792865 C e colAng1.NW_012118821v1 3389128 216 - 13651311 I a score=6695.000000 s hg38.chr2_KI270769v1_alt 73650 1 + 120616 a s panTro5.chr2A 3535446 1 + 111504155 a i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396198 1 + 114371477 a i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274035 1 + 637652 a i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069980 1 + 81552678 a i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332734 1 + 108979918 a i rheMac8.chr13 I 1 C 0 s macFas5.chr13 5043874 1 - 111193037 a i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3436538 1 + 3644372 a i macNem1.NW_012011978v1 I 1 C 0 s cerAty1.NW_012000820v1 3391750 1 - 10304083 A i cerAty1.NW_012000820v1 I 1 C 0 s chlSab2.chr14 3487720 1 - 107702431 a i chlSab2.chr14 I 27 C 0 s cebCap1.NW_016107454v1 611584 1 + 5243153 a i cebCap1.NW_016107454v1 C 0 I 11 s otoGar3.GL873658 2559051 1 + 5252280 A i otoGar3.GL873658 C 0 I 4 s mm10.chr12 91430589 1 - 120129022 A i mm10.chr12 C 0 C 0 s canFam3.chr17 2055687 1 + 64289059 g i canFam3.chr17 C 0 I 1 e micMur3.chr8 2665973 692 - 159902609 I e saiBol1.JH378218 3126333 0 - 7082604 C e proCoq1.NW_012151163v1 977711 407 + 1238772 I e dasNov3.JH580157 591875 31 + 2232271 I e aotNan1.NW_018509326v1 3355113 0 + 7587287 C e calJac3.chr14 3481417 0 - 108792865 C e colAng1.NW_012118821v1 3389128 216 - 13651311 I e manLeu1.NW_012104432v1 1024653 52 + 1565135 I a score=-44740.000000 s hg38.chr2_KI270769v1_alt 73651 18 + 120616 tgctca--------cacac----gcttaca s panTro5.chr2A 3535447 22 + 111504155 tgctca--------cacacacacgcttaca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396199 18 + 114371477 tgctca--------cacac----gcttaca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274036 11 + 637652 tgctca--------cacac----------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3069981 22 + 81552678 tgctca--------cacacacacgctcaca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332735 18 + 108979918 cgttca--------cacac----acacaca i rheMac8.chr13 C 0 I 26 s macFas5.chr13 5043875 18 - 111193037 cgttca--------cacac----acacaca i macFas5.chr13 C 0 I 26 s macNem1.NW_012011978v1 3436539 18 + 3644372 cgttca--------cacac----acacgca i macNem1.NW_012011978v1 C 0 I 26 s cerAty1.NW_012000820v1 3391751 24 - 10304083 CGTTCACGCGC--TCACAC----ACACGCA i cerAty1.NW_012000820v1 C 0 I 26 s chlSab2.chr14 3487721 18 - 107702431 tgctca--------tacac----gcacgct i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3481417 4 - 108792865 --------------CACA------------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126333 14 - 7082604 cacacacaca----caca------------ i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3355113 1 + 7587287 -----------------a------------ i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2559056 8 + 5252280 AGGTCA--------GC-------------- i otoGar3.GL873658 I 4 C 0 s mm10.chr12 91430590 4 - 120129022 -GGCC------------------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2055689 26 + 64289059 tgctcgcttgcgagtacat----gcttgca i canFam3.chr17 I 1 C 0 e micMur3.chr8 2665973 692 - 159902609 I e proCoq1.NW_012151163v1 977711 407 + 1238772 I e dasNov3.JH580157 591875 31 + 2232271 I e cebCap1.NW_016107454v1 611585 11 + 5243153 I e colAng1.NW_012118821v1 3389128 216 - 13651311 I e manLeu1.NW_012104432v1 1024653 52 + 1565135 I a score=34745.000000 s hg38.chr2_KI270769v1_alt 73669 19 + 120616 c--------------acacatgctcgcactcgc-- s panTro5.chr2A 3535469 19 + 111504155 c--------------acacaTGCTCGCACTTGT-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396217 19 + 114371477 c--------------acacaTGCTCGCACTCGT-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274047 18 + 637652 ---------------acacaTGCTCGCACTCGT-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070003 33 + 81552678 cacacgcACATTCATACACTCACACGCACTCGC-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332779 19 + 108979918 c--------------tcacacactcacactcgc-- i rheMac8.chr13 I 26 C 0 s macFas5.chr13 5043919 19 - 111193037 c--------------tcacacacacacactcgc-- i macFas5.chr13 I 26 C 0 s macNem1.NW_012011978v1 3436583 19 + 3644372 c--------------tcacacactcacactcgc-- i macNem1.NW_012011978v1 I 26 C 0 s cerAty1.NW_012000820v1 3391801 19 - 10304083 C--------------ACACACGCTCACACTCGC-- i cerAty1.NW_012000820v1 I 26 C 0 s chlSab2.chr14 3487739 19 - 107702431 c--------------acacacgctcacacTCGC-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1024705 19 + 1565135 C--------------ACACACGCTCACACTCGC-- i manLeu1.NW_012104432v1 I 52 C 0 s colAng1.NW_012118821v1 3389344 19 - 13651311 c--------------acacacgctcacaGTCGC-- i colAng1.NW_012118821v1 I 216 C 0 s calJac3.chr14 3481421 7 - 108792865 --------------------------CACACAC-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126347 7 - 7082604 --------------------------cacacac-- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3355114 7 + 7587287 --------------------------cacacac-- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2559064 12 + 5252280 ----------------CCCAC-----CAGTCAC-- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91430594 12 - 120129022 ---------------------GGCTGGCCTTGG-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2055715 19 + 64289059 ----------------cacacatgcacacgtgcac i canFam3.chr17 C 0 I 607 e micMur3.chr8 2665973 692 - 159902609 I e proCoq1.NW_012151163v1 977711 407 + 1238772 I e dasNov3.JH580157 591875 31 + 2232271 I e cebCap1.NW_016107454v1 611585 11 + 5243153 I a score=17048.000000 s hg38.chr2_KI270769v1_alt 73688 6 + 120616 acaGCT------------ s panTro5.chr2A 3535488 6 + 111504155 ACAACT------------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396236 6 + 114371477 ACAACT------------ i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274065 6 + 637652 ACAACT------------ i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070036 6 + 81552678 ACAACT------------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332798 6 + 108979918 acaATT------------ i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5043938 6 - 111193037 acaATT------------ i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3436602 6 + 3644372 acaATT------------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3391820 6 - 10304083 ACAACT------------ i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3487758 6 - 107702431 ACAACT------------ i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1024724 6 + 1565135 ACAACT------------ i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3389363 6 - 13651311 ACAACT------------ i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3481428 6 - 108792865 ACAACT------------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126354 6 - 7082604 acaACT------------ i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3355121 3 + 7587287 acT--------------- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2559076 3 + 5252280 TCA--------------- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91430606 3 - 120129022 GCG--------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2056341 18 + 64289059 ACAGCGTGGCGCTGCTGT i canFam3.chr17 I 607 C 0 e micMur3.chr8 2665973 692 - 159902609 I e proCoq1.NW_012151163v1 977711 407 + 1238772 I e dasNov3.JH580157 591875 31 + 2232271 I e cebCap1.NW_016107454v1 611585 11 + 5243153 I a score=36354.000000 s hg38.chr2_KI270769v1_alt 73694 3 + 120616 AGA s panTro5.chr2A 3535494 3 + 111504155 AGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396242 3 + 114371477 AGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274071 3 + 637652 AGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070042 3 + 81552678 AGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332804 3 + 108979918 AGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5043944 3 - 111193037 AGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3436608 3 + 3644372 AGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3391826 3 - 10304083 AGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3487764 3 - 107702431 AGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1024730 3 + 1565135 AGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3389369 3 - 13651311 AGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3481434 3 - 108792865 AGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126360 3 - 7082604 AGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611596 3 + 5243153 AGA i cebCap1.NW_016107454v1 I 11 C 0 s aotNan1.NW_018509326v1 3355124 3 + 7587287 AGA i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91430609 3 - 120129022 GGG i mm10.chr12 C 0 C 0 s canFam3.chr17 2056359 3 + 64289059 GGG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 591906 3 + 2232271 AGT i dasNov3.JH580157 I 31 C 0 e micMur3.chr8 2665973 692 - 159902609 I e proCoq1.NW_012151163v1 977711 407 + 1238772 I e otoGar3.GL873658 2559079 0 + 5252280 C a score=1227863.000000 s hg38.chr2_KI270769v1_alt 73697 85 + 120616 CAGCAGAGACAGGCAGCAGGAAGGCGTGGGAAAGGAGACCGAGGCATGTGCTGTCTGGCTCGTCATGGGCGTCAGGCCTTGAATA s panTro5.chr2A 3535497 85 + 111504155 CAGCAGAGACAGGCAGCAGGAAGGCGTGGGAAAGGAGACCGAGGCATGTGCTGTCTGGCTCGTCATGAGCATCAGGCCTTGAATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396245 85 + 114371477 CAGCAGAGACAGGCAGCAGGAAGGCGTGGGAAAGGAGACCGAGGCATGTGCTGTCTGGCTCGTCATGAGCATCAGGCCTTGAATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274074 85 + 637652 CAGCAGAGACAGGCAGCAGGAAGGCGTGGGAAAGGAGACCGAGGCATGTGCTGTCTGGCTCGTCATGAGCATCAGGCCTTGAATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070045 85 + 81552678 CAGCAGAGACAGGCAGCAGGAAGGCGTGGGAAAGGAGACCGAGGCATGTGCTGTCTGGCTCCTCATGAGCATCAGGCCTTGAATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332807 85 + 108979918 CAGCAGAGACAGGCAGCAGGAAGGCGTGGGAAAGGAGACTGAGGCATGTGCTGTCTGGCTCCTCATGGGCGTCAGGCCTTGAATA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5043947 85 - 111193037 CAGCAGAGACAGGCAGCAGGAAGGCGTGGGAAAGGAGACTGAGGCATGTGCTGTCTGGCTCCTCATGGGCGTCAGGCCTTGAATA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3436611 85 + 3644372 CAGCAGAGACAGGCAGCAGGAAGGCGTGGGAAAGGAGACTGAGGCATGTGCTGTCTGGCTCCTCATGGGCGTCAGGCCTTGAATA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3391829 85 - 10304083 CAGCAGAGACAGGCAGCAGGAAGGCGTGGGAAAGGAGACTGAGGCATGTGCTGTCTGGCTCCTCATGGGCGTCAGGCCTTGAATA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3487767 85 - 107702431 CAGCAGAGACAGGCGGCAGGAAGGCGTGGGAAAGGAGACTGAGGCATGTGCTGTCTGGCTCCTCATGGGCGTCAGGCCTTGAATA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1024733 85 + 1565135 CAGCAGAGACAGGCAGCAGGAAGGCGTGGGAAAGGAGACTGAGGCATGTGCTGTCTGGCTCCTCATGGGCGTCAGGCCTTGAATA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3389372 79 - 13651311 CGGCAGAGACAGGCAGCAGGAAGGCGCGGGAAAGGAGC------CACGTGCTGTCTGGCTCCTCATGGACGTCAGGCCTGGAATA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3481437 85 - 108792865 CAGCAGTGGCAGGCAGCAGGAAGGCATGGGAAAGGAGACCGAGGCATGTGCTGTCTGGCTCCTCATGAGCATCAGGCCTTGAATA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126363 85 - 7082604 CAGCAGTGGCAGGCAGCAGGAAGGCGTGGGAAAGGAGACCAAGGCATGTGCTGTCTGGCTCCTCATGAGCATCGGGCCTTGAATA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611599 84 + 5243153 CAGCAGTGGCAGGCAGCAGGAAGGCGTGGG-AAGGAGACCGAGGCGTGTGCTGTCTGGCCCCTCATGAGCATCGGGCTTTGAATA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3355127 85 + 7587287 CAGCAGTGGCAGGCAGCAGGAAGGCATGGGAAAGGAGACCGAGGCATGTGCTGTCTGGCTCCTCATGAGCATCAGGCCTTGAATA i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 978118 82 + 1238772 CAGCAGTGACAGGCAGCAAGAAGTCGTGGGAGAGGAGACCGAGGCACGTGCTGTCTGGC---TCCAGAGCATCTGGCCTCGAATG i proCoq1.NW_012151163v1 I 407 C 0 s otoGar3.GL873658 2559079 67 + 5252280 -------------CAGGAGCAAGGTGTGGAAAAGGAGACCGAGGCACGTGCCATCTA-----TCCTGAGCATCTGGCCTTGAAGG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91430612 84 - 120129022 CCGCAGTGACAGGCAGCAA-ACGTGGTAGGAGAGGAAATCAAGGCATGTGTGGTCTGGCTCCTTGTGAGCATCAGGCCTTGAATA i mm10.chr12 C 0 C 0 s canFam3.chr17 2056362 79 + 64289059 TGGCAGTGATAGACAGCGAGCAGCCACAGGGAAGGA-----AGGCAGGTGCTGTCAGGGTCCTCA-GAGCATCACATCTTGAATA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 591909 84 + 2232271 CAGCAATGACAGATCACAAGAAA-CGGGGAAAAGGAAGTGGAGGTATGAGCTGCCTGGCTCCTTGTGAGCATCGCACCCTGAATA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2665973 692 - 159902609 I a score=808272.000000 s hg38.chr2_KI270769v1_alt 73782 47 + 120616 AAATTAGTTTTAATGAGCTGTACTCGAAGGTACTAGACTGGAGAGAG s panTro5.chr2A 3535582 47 + 111504155 AAATTAGTTTTAATGAGCTGTACTCGAAGGTACTAGACTGGAGAGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396330 47 + 114371477 AAATTAGTTTTAATGAGCTGTACTCGAAGGTACTAGACTGGAGAGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274159 47 + 637652 AAATTAGTTTTAATGAGCTGTACTCGAAGGTACTAGACTGGAGTGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070130 47 + 81552678 AAATTAGTTTTAATGAGCTGTACTCGAAGGTACTAGACTGGAGGGAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332892 47 + 108979918 AAATGAGTTTTAATGAGCTGTACTCGAAGGTACTAGACTGGAGACAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5044032 47 - 111193037 AAATGAGTTTTAATGAGCTGTACTCGAAGGTACTAGACTGGAGACAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3436696 47 + 3644372 AAATGAGTTTTAATGAGCTGTACTCGAAGGTACTAGACTGGAGACAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3391914 47 - 10304083 AAATGAGTTTTAATGAGCTGTACTCGAAGGTACTAGACTGGAGACAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3487852 47 - 107702431 AAATTAGTTTTAATGAGCTGTACTCGAAGGTACTAGACTGGAGACAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1024818 47 + 1565135 AAATGAGTTTTAATGAGCTGTACTCGAAGTTACTAGACTAGAGACAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3389451 47 - 13651311 AAATGAGTTTTAATGAGCTGTACTCGAAGGTACTAGACTGGAGAGAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3481522 47 - 108792865 AAATTCCTTTTAATGAGCTATACTCGAAGGTACTAGACTGGAGACAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126448 47 - 7082604 AAATTAGTTTTAATGAGCTATACTCGAAGGTACTAGACTGGAGAGAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611683 47 + 5243153 AAATTAGTTTTAATGAGCTATACTCGAAGGTACTAGACTGGAGAGAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3355212 47 + 7587287 AAATTAGTTTTAATGAGCTATACTCGAAGGTACTAGACTGGAGAGAG i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2666665 47 - 159902609 AAATTAGTTTTAACAAGCTGTGCTTGAAGGTACTGGAGTGGAGAGAG i micMur3.chr8 I 692 I 15 s proCoq1.NW_012151163v1 978200 47 + 1238772 AAATTAGTTTTAACGAGCTGTGCTTGAAGGTACTAGAATGGAGAGAG i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2559146 47 + 5252280 AGATTAGTTTTAACAAGCTGTGCTTGAAGGTTCCAGAATGGAGGGGG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91430696 45 - 120129022 AAATTAGTTTTAACGAGCTGCACTTGAAGGTACCAGACTGGAGAG-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2056441 42 + 64289059 AAATTTGTCTTAATGAGCTTCACT-GAAGGGGCCAGACTAGAG---- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 591993 47 + 2232271 AAATTAGTTTTAATGAGCTGCACTTGAAGGGACTAGACTGGAGAGAC i dasNov3.JH580157 C 0 C 0 a score=32137.000000 s hg38.chr2_KI270769v1_alt 73829 27 + 120616 TCGTTTTGGGTTTTT--T---TTGTTTTTTCC s panTro5.chr2A 3535629 27 + 111504155 TCATTTTGGGTTTTT--T---TTGTTTTTTCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396377 26 + 114371477 TCATTTTGGG-TTTT--T---TTGTTTTTTCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274206 27 + 637652 TCGTTTTGGGTTTTT--T---TTGTTTTTTCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070177 27 + 81552678 TCATTTTGGGTTTTT--T---TTGTTTTTTCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332939 29 + 108979918 TCTTTTTGTTTTTTTGGG---TTTTTTTTTCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5044079 29 - 111193037 TCTTTTTGTTTTTTTGGG---TTTTTTTTTCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3436743 30 + 3644372 TCTTTTTGTTTTTTTGGGT--TTTTTTTTTCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3391961 29 - 10304083 TCTTTTTGTTTTTTTGGG---GTTTTTTTTCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3487899 29 - 107702431 TCTTTTTGTTTTTTGGGT---TTTTTTTTTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1024865 29 + 1565135 TCTTTTTGTTTTTTTGGG---TTTTTTTTTCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3389498 29 - 13651311 TCTTTTTGTTTTCTGGGT---TTTTTTTTTCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3481569 12 - 108792865 TC--------------------TTTTTTTTTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126495 18 - 7082604 TCCTTT-----------T---TTTTTTTTTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611730 13 + 5243153 TC-------------------TTTTTTTTTTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3355259 13 + 7587287 TC-------------------TTTTTTTTTTC i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 978247 13 + 1238772 --TCCTTGCATTTCA----------------- i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2559193 13 + 5252280 --TCTTTACGTTTTG----------------- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91430741 16 - 120129022 ----------TCTTC------TTTTTTTTTTA i mm10.chr12 C 0 C 0 s canFam3.chr17 2056483 16 + 64289059 ----------TTTTTTCA---TTCTTTTT--- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 592040 14 + 2232271 ------------------TCTTAATTTTTTTC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666712 15 - 159902609 I a score=1734860.000000 s hg38.chr2_KI270769v1_alt 73856 110 + 120616 TTCCTACCAAACTGGAATTGTACTTGTCTGTCTTTCTTTGTAACATCCCAATTAGCAAGCC-AGTAACTCCA---GTCCCAGTTTGGAGGAAATGGAACATGTAGAAGAATAAA s panTro5.chr2A 3535656 110 + 111504155 TTCCTACCAAACTGGAATTGTACTTGTCTGTCTTTCTTTGTAACATCCCAATTAGCAAGCC-AGTAACTCCA---GTCCCAGTTTGGAGGAAATGGAACATGTAGAAGAATAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396403 110 + 114371477 TTCCTACCAAACTGGAATTGTACTTGTCTGTCTTTCTTTGTAACATCCCAATTAGCAAGCC-AGTAACTCCA---GTCCCAGTTTGGAGGAAATGGAACATGTAGAAGAATAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274233 110 + 637652 TTCCTACCAAACTGGAATTGTACTTGTCTGTCTTTCTTTGTAACATCCCAATTAGCAAGCC-AGTAACTCCA---GTCCCAGTTTGGAGGAAATGGAACATGTAGAAGAATAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070204 110 + 81552678 TTTCTACCAAACTGGAATTGTACTTGTCTGTCTTTCTTTGTAACGTCCCAATTAGCAAGCT-AGTAACTCCA---GTCCCAGTTTGGAGGAAATGGAACATGTAGAAGAATAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3332968 110 + 108979918 TTCCTACCAAACTGGAATTGTACTTGTCTGTCTTTCTTTGTAACATCCCAATTAGCAAGCT-AGTAACTCCA---GTCCCAGTTTGGAGGAAATGGAACATGTAGAAGAATAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5044108 110 - 111193037 TTCCTACCAAACTGGAATTGTACTTGTCTGTCTTTCTTTGTAACATCCCAATTAGCAAGCT-AGTAACTCCA---GTCCCAGTTTGGAGGAAATGGAACATGTAGAAGAATAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3436773 110 + 3644372 TTCCTACCAAACTGGAATTGTACTTGTCTGTCTTTCTTTGTAACATCCCAATTAGCAAGCT-AGTAACTCCA---GTCCCAGTTTGGAGGAAATGGAACATGTAGAAGAATAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3391990 110 - 10304083 TTCCTACCAAACTGGAATTGTACTTGTCTGTCTTTCTTTGTAACATCCCAATTAGCAAGCT-AGTAACTCCA---GTCCCAGTTTGGAGGAAATGGAACATGTAGAAGAATAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3487928 110 - 107702431 TTCCTACCAAACTGGAATTGTACTTGTCTGTCTTTCTTTGTAACATCCCAATTAGCAAGCT-AGTAACTCCA---GTCCCAGTTTGGAGGAAATGGAACGTGTAGAAGAATAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1024894 110 + 1565135 TTCCTACCAAACTGGAATTGTACTTGTCTGTCTTTCTTTGTAACATCCCAATTAGCAAGCT-AGTAACTCCA---GTCCCAGTTTGGAGGAAATGGAACATGTAGAAGAATAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3389527 107 - 13651311 TTCCTACCAAACTGGAATTGTACTTGTCTTTCTTTCTTTGTAACATTCCAATTAGCAAGCT-AGTAACTCCA---GTCCCAGGTTGGAGGAAATGGAACATGTAGAAGAAT--- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3481581 109 - 108792865 TTCCTACCAAACTGGAATTGTACTTGTCTGTCTTTCTTTGTAACATCCCAATTAGCAAGC--AGTAACTCCA---GTCCCAGTTTGGAGGAAATGGAACATGTAGAAGAGTAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126513 110 - 7082604 TTCCTACCAAACTGGAAGTGTCCTTGCCTGTCTTTCTTTGTGACATCCCAATCAGCAAGCT-AGTAACTCCA---GTCCCAGTTTGTAGGAAATGGAACTTGTAGAAGAGTAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611743 109 + 5243153 TTCCTACCAAACTGGAATTGTACTTGTCTGTCTTTCTTTGTAACATCCCAATTAGCAAGCT-AGTAACTCCA---GTCCCAGTTTGGAGG-AATGGAACTTGTAGAAGAGTAAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3355272 110 + 7587287 TTCCTACCAAACTGGAACTGTACTTGTCTGTCTTTCTTTGTAACATCCCAATTAGCAAGCT-AGTAACTCCA---GTCCCAGTTTGGAGGAAATGGGACATGTACAATAGTAAA i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2666727 109 - 159902609 TTCCTGCCAAACTGGAGTTTCCCTTGTC-GTCTTTCTTCATAACGTCCCTATTAGCAAAAC-GGTAACTGCA---GTCCCAGTCTGGAGGAAATCGAAAATGTGGAAGAATAAA i micMur3.chr8 I 15 I 755 s proCoq1.NW_012151163v1 978260 109 + 1238772 TTCCTGCCAAACTGGAGTTTTGCTTGTC-GTCTTTCTTTATAACGTCCCAATTAGCAAACT-AGTAACTCCA---GTCCCAGTTTGGAGGAAATTGAAAATGTGGAAGAATAAA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2559206 104 + 5252280 -TCCTGCTGAACTGGAGT----CTTGTC-ATCTTTCTCTATAACACCCCAATTAGCAAACT-AGTGACTCCA---GTTCCAGCTTGGAGGACATTGAAAATGTGGCAGAATAAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91430757 107 - 120129022 CCCCTGCCAAACTGGAATTTTCCTTGTC-GTCTGTCTCTATAACCTCCCAATTAGCAAGCTCAGTCGCTGTA---GTCCCAGTTTAGAGGAAACTTAAAGTTTAGAGTAGA--- i mm10.chr12 C 0 C 0 s canFam3.chr17 2056499 81 + 64289059 ---GTGCTACACTGGGATTTTACTTGTC-ACCCATCTT--------------------------TAACTCCA---GCCCCAGTTTGGATCAGACTGAAAATGTGGAGGAATAAA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 592054 100 + 2232271 --TCTGCCAAAATGGAATCTTACTTGTC-ATCTTTCTTTAAAACATCCCAATTAGAAAACT-AGTAATTCCACAGGTGCCAGATTGGGTGAAATTGAAAATGTG---------- i dasNov3.JH580157 C 0 C 0 a score=230891.000000 s hg38.chr2_KI270769v1_alt 73966 20 + 120616 GAAATAAAAGTACCT-CTGGG s panTro5.chr2A 3535766 21 + 111504155 GAAATAAAAGTACCTTCTGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396513 21 + 114371477 GAAATAAAAGTACCTTCTGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274343 21 + 637652 GAAATAAAAGTACCTTCTGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070314 21 + 81552678 GAAATAAAAGTACCTTCTGGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3333078 21 + 108979918 GAAATAAAAGTACCTTCTGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5044218 21 - 111193037 GAAATAAAAGTACCTTCTGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3436883 21 + 3644372 GAAATAAAAGTACCTTCTGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3392100 21 - 10304083 GAAATAAAAGTACCTTCTGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3488038 21 - 107702431 GAAATAAAAGTACCTTCTGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1025004 21 + 1565135 GAAATAAAAGTACCTTCTGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3389634 20 - 13651311 -AAATAAAAGTACCTTCTGGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3481690 10 - 108792865 GAAATAGATG----------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126623 21 - 7082604 GAAATGAAAGTACCTTCTGGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 611852 21 + 5243153 GAAATAAAAGTACCTTCTGGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3355382 21 + 7587287 GAAAGAAAAGTACCTTCTGCG i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 978369 20 + 1238772 GAAGTAAAGGTACCTGTGGG- i proCoq1.NW_012151163v1 C 0 I 778 s otoGar3.GL873658 2559310 20 + 5252280 GAAATGAAGGCACCTTCCAG- i otoGar3.GL873658 C 0 I 1 s mm10.chr12 91430864 20 - 120129022 GAAGTGAAA-TACCTCCCAGA i mm10.chr12 C 0 C 0 s canFam3.chr17 2056580 15 + 64289059 -----GGAAGTGCTCATGGG- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 592154 21 + 2232271 AAAATAAAAGTGTGTTCTGGG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I a score=1036540.000000 s hg38.chr2_KI270769v1_alt 73986 116 + 120616 ATTATACGATGAGTAAGTAAGAAGAAAAACACCATTGGTGGCCATAGTTACTGCTGACCGCGTGCTTATAGCtaagtgcgagaatgcaggggagcatttagtgcagggcctgccgc s panTro5.chr2A 3535787 112 + 111504155 ATTATACGATGAATAAG----AAGAAAAACACCATTGGTGGCCATAGTTACTGCTGACCGTGTGCTTATAGCtaagtgcgagaatgcaggggagtatttagtgcagggcctgctgc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396534 112 + 114371477 ATTATACGATGAATAAG----AAGAAAAACACCATTGGTGGCCATAGTTACTGCTGACCGTGTGCTTATAGCtaagtgcgagaatgcaggggagtatttagtgcagggcctgctgc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274364 116 + 637652 ATTATACGATGAATAAGTAAGAAGAAAAACACCATTGGTGGCCATAGTTATTGCTGACCGTGTGCTTATAGCtaagtgcgagaatgcaagggagtatttagtgcagggcctgctgc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070335 116 + 81552678 ATTATACGATGAATAAGTAAGAAGAAAAACACCATTGGTGGCCATAGTTATTGCTGACCAtgtgctgatagctaagtgcgagaaagcagggaagtatttagggcagggcctgctgc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3333099 116 + 108979918 ATTTTACGATGAATAAGTAAGAAGGAAAACACCATTGGTGGCCGTCGTTATTGCTGACCGAGTGCTTATAGCtaagtgctagaatgcaggggagtatttagtgcagggcctgctgc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5044239 116 - 111193037 ATTTTACGATGAATAAGTAAGAAGGAAAACACCATTGGTGGCCGTCGTTATTGCTGACCGAGTGCTTATAGCtaagtgctagaatgcaggggagtatttagtgcagggcctgctgc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3436904 116 + 3644372 ATTTTACGATGAATAAGTAAGAAGGAAAACACCATTGGTGGCCGTCGTTATTGCTGACCGAGTGCTTATAGCTAAGTGCTAGAATGCAGGGGagtatttagtgcagggcctgctgc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3392121 116 - 10304083 ATTTTACGATGAATAAGTAAGAAGGAAAACACCATTGGTGGCCGTCGTTATTGCTGACCGAGTGCTTATAGCTAAGTGCTAGAATGCAGGGGagtatttagtgcagggcctgctgc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3488059 116 - 107702431 ATTTTACGATGAATAAGTAAGAAGGAAAACACCATTGGTGGCCGTCGTTATTGCTGACCAAGTGCTTATAGCTAAGTGCTAGAATGCAGGGGagtatttagtgcagggcctgctgc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1025025 116 + 1565135 ATTTTATGATGAATAAGTAAGAAGGAAAACACCATTGGTGGCCGTCGTTATTGCTGACCGAGTGCTTATAGCtaagtgctagaatgcaggggagtatttagtgcagggcctgctgc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3389654 116 - 13651311 ATTTTACGATGAATAAGAAGGAAGGAAAACACCATTGGTGGCCACCGTTACTGCTGACCGTGTGCTTATAGCTAACTGCTCGAATGCAGGGAagtatttagtgcagggcctgctgc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3481700 102 - 108792865 -------AATAAT----TAAGAAGAAAAACACCATTGGTGGCCATAGTAACTGTTGACCGCGTGCTTACAGCTC--TGCCAGAATGCAGGGAAGCATTTAGTGCAGGG-CGGCTGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126644 110 - 7082604 AATTTATGATGAA----TAAGAAGAAAAAGACCATTGGTGGCCATAGTTACTGCTGACCTCGTGCTTAGAGCTCCGTGCCAGAAAGCAGGGAAGCATTTAGCGCA-GG-CTGCTGC i saiBol1.JH378218 C 0 I 62 s cebCap1.NW_016107454v1 611873 111 + 5243153 ATTTTACGGTGAG----TAGGAAGAAAAACACCATTGGCGGCCATAGTTACTGCTGGCCGCGTGCTTAGAGCTCCGTGCCAGAATGCAGGGAAGCATTTAGTGCAGGG-CCGCTGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3355403 115 + 7587287 ATTTTACGATGAATAGTTAAGAAGAAAAACACCATCGGTGGCCATAGTTACTGCTGACCACGTGCTTAGAGCTCCGTGCCAGATTGCAGGGAAGCATTTGGTGCAGGG-CTGCTGC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2559331 109 + 5252280 GTTTTAT--TGAATACATCAGGAGG-AAACCCCAT-GGGGGCCG--GCTTATGCTGACCACATTCC-GCGACCCAGGACCATGCCCCGGGGAGGTACTGGGCATGACGCCTGGCTC i otoGar3.GL873658 I 1 C 0 s mm10.chr12 91430884 95 - 120129022 ATCTTATG--------GTTAGGAGGAAATGAGCAGTGCCAGCCTTGG--ACTGGTCACCATGAGCT-GTAACTGAG----AGGAAACA----AGTGCTTGGCACGGCTCTTGCC-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2056595 87 + 64289059 ---TTAGGAAGAATGAGCTAGGAGGGACGTGCGTCTGG-AGCCGTGTTTCTCG-------------------TCTGTGCTGTAACTCAGGGAA------AACACAGCGCCCAACAC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 592175 106 + 2232271 ATTTTATGTTGAAGAAATCAGTAGAAAAATAACATCAGTGGCCATATTCATTGCTGACTGTTTGCT-----CTAAGTGCTA-----CAGGAAAGCGTTCAGCACAGTTCTGGGTAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I e proCoq1.NW_012151163v1 978389 778 + 1238772 I a score=1502448.000000 s hg38.chr2_KI270769v1_alt 74102 169 + 120616 acacagctcgc---tcaa-taaat-gC---GGCGATCAC----TGTCATCCTGGAGAGAGC-CCGGGTTTGCT-GGGGACTTGAGACAAG--CTACC-ACTGTGTCCCACGTGACTTTGGCAAGACCTTCCTGCACGG-AGAC-CGCGTTGCTCACACCTGGAA-----AGGGTGACTGG-------------------------------------GTC---------------------------CGCTCAGCGT s panTro5.chr2A 3535899 169 + 111504155 acagagctcgc---tcaa-taaat-gT---GGCGATCAC----TGTCATCCTGGAGAGAGC-CCGGGTTTGTT-GGGGACTTGAGACAAG--CTACC-ACTGTGTCCCACGTGACTTTGGCGAGACCTTCCTGCACGG-AGAC-CGCGTTGCTCACACCTGGAA-----AGGGTGACTGG-------------------------------------GTC---------------------------CACTCAGCGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396646 169 + 114371477 acagagctcgc---tcaa-taaat-gT---GGCGATCAC----TGTCATCCTGGAGAGAGC-CCGGGTTTGTT-GGGGACTTGAGACAAG--CTACC-ACTGTGTCCCACGTGACTTTGGCGAGACCTTCCTGCACGG-AGAC-CGCGTTGCTCACACCTGGAA-----AGGGTGACTGG-------------------------------------GTC---------------------------CACTCAGCGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274480 169 + 637652 acagagcttgc---tcaa-taaat-gT---GGCGATCAC----TGTCATCCTGGAGAGAGC-CCGGGTTTGTT-GGGGACTTGAGACAAG--CTACC-ACTGTGTCCCACGTGACTTTGGCAAGACCTTCCTGCACGG-AGAC-CGCGTTGCTCACACCTGGAA-----AGGGTGACTGG-------------------------------------GTC---------------------------CACTCAGCGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070451 169 + 81552678 acagagctcgc---tcaa-taaat-gT---GGCGATCAC----TGTCATCCTGGAGGGAGC-CTGGGTTTGTT-GGGGACTTGAGACAAG--CTACC-ACTGTGTCCCACGTGACTTTGGCAAGACCTTCCTGCACTG-AGAC-CGCTTTGCTCACGCCTGGAA-----AGGGTGACTGG-------------------------------------GTC---------------------------CACTCAGCAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3333215 169 + 108979918 acagagctcgc---tcag-taaat-gT---GGCGATCAC----TGTCTTACTAGAGAGAGC-CCGGGTTTGTT-GGGGACTTGAGACAAG--CTACC-ACTGTGTCCCACATGACTCTGGCAAGACCTTCCTGCACTG-AGAC-CGCTTTGCTCACACCTGGAA-----AGGGTGACTGG-------------------------------------GTC---------------------------CACTCAGCGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5044355 169 - 111193037 acagagctcgc---tcag-taaat-gT---GGCGATCAC----TGTCTTACTAGAGAGAGC-CCGGGTTTGTT-GGGGACTTGAGACAAG--CTACC-ACTGTGTCCCACATGACTCTGGCAAGACCTTCCTGCACTG-AGAC-CACTTTGCTCACACCTGGAA-----AGGGTGACTGG-------------------------------------GTC---------------------------CACTCAGCGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3437020 169 + 3644372 acagagctcgc---tcag-taaat-gt---GGCGATCAC----TGTCTTACTAGAGAGAGC-CCGGGTTTGTT-GGGGACTTGAGACAAG--CTACC-ACTGTGTCCCACATGACTCTGGCAAGACCTTCCTGCACTG-AGAC-CGCTTTGCTCACACCTGGAA-----AGGGTGACTGG-------------------------------------GTC---------------------------CACTCAGCGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3392237 169 - 10304083 acagagctcgc---tcag-taaat-gt---GGCGATCAC----TGTCTTACTAGAGAGAGC-CCGGGTTTGTT-GGGGACTTGAGACAAG--CTACC-ACTGTGTCCCACATGACTCTGGCAAGACCTTCCTGCACTG-AGAC-CGCTTTGCTCACACCTGGAA-----AGGGTGACTGG-------------------------------------GTC---------------------------CACTCAGCGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3488175 169 - 107702431 acagagcttgc---tcag-taaat-gt---GGCGATCAC----TGTCATACTAGAGAGAGC-CCGGGTTTGTT-GGGGACTTGAGACAAG--CTACC-ACTGTGTCCCACATGACTCTGGCAAGACCTTCCTGCACTG-AGAC-CGCTTTGCTCACACCTGGAA-----AGGGTGACTGG-------------------------------------GTC---------------------------CACTCGGCAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1025141 169 + 1565135 acagagctcgc---tcaa-taaat-gT---GGCAATCAC----TGTCTTACTCGAGAGAGC-CCGGGTTTGTT-GGGGACTTGAGACAAG--CTACC-ACTGTGTCCCACATGACTCTGGCAAGACCTTCCTGCACTG-AGAC-CGCTTTGCTCACACCTGGAA-----AGGGTGACTGG-------------------------------------GTC---------------------------CACTCAGCGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3389770 169 - 13651311 acagagctcgc---tcag-taaat-gt---GGCGATCGC----TGTCATACTAGAGAGAGC-CCGGGTTTGTT-GGGGACTTGAGACAAG--CTACC-ACTGTGTCCCACGTGACTTTGGCAAGACCTTCCTGCACTG-AGAC-CGCTTTGCTCACACCTGGAA-----AGGGTGACTGG-------------------------------------GTC---------------------------CACTCAGCAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3481802 162 - 108792865 ACGGAGCTCGC---TCAG-TGAAT-GT---GGTGATCAC----TGTCATCCTGGAGAGAGC-CTGGGCTCGC--AGGGGCTTGAGACAAG--CTTCC-ACTGTGTCCCACGTGACTTAGGCAAGACCTCCCTGCTCTG-AGAC-CACTTTGCTCACTCTTGGAG----------GACTGG-------------------------------------GTC---------------------------CACTTA-TAT i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 611984 165 + 5243153 GCAGAGCTCGC---TCAG-TGAAT-GT---GGTGATCAC----TG---TCCTGCAGAGAGT-CCGGATTTGT--GGGGGCTTGAGACAAG--CTTCC-GCCATGTCCCACGTGACTCAGGCAAGACCTCCCTGCTCTG-AGAC-CACTTTGCTCACACCTGGAA-----AGGGTGACTGG-------------------------------------GCC---------------------------CACTCAGTCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3355518 168 + 7587287 ACAGAGCTCGC---TCAG-TGAGT-GT---GGTGATCGC----CATCATCCTGGAGAGAGC-CCGGGTTTGC--GGGGGCTTGAGACAAG--CTTCC-ACTGTGTCCCACGTGACTTAGGCAAGACCTCCCTGCTCTG-AGAC-CACTTTGCTCACACCTGGAA-----AGGGTGACTGG-------------------------------------GTC---------------------------CACTCAGTAT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2559440 182 + 5252280 TCCAGGCTTGCGTGGCAA-CAATTAGT---GGTGAGCATGTCACATCATACTGAAGAGGAT-AT---TTTGTT-AGAGGCTGGAGACAAG--CTGAC-----------------CTTTGGCAAGACCTTTTT---CTG-AAAC-CAGTGTCCTCACACTTGGGA-----AATCTGACTAG-------------------------------------GTCTCTCCCCACGTTATCTGGAGGCTCATACAATTGGCAT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91430979 146 - 120129022 ACAGTGTTTGC---TCGGCTGCAC-GC---TACAGAGGC----TG-------GAGGAGGAG-CTGACCT-----------TTGAACC-----CTCTC-ACTGAACCC-----AACTCT---CATACCTTTTTGTACTGTGGAC-CA--------AAAGTGGGAA-----GTGGATACTAG-------------------------------------GTG----------------GGTGGTAGAGAGACTTAGCCT i mm10.chr12 C 0 C 0 s canFam3.chr17 2056682 150 + 64289059 -AAGAGCCTAC---TCAG-TAACC-ATCACAGTGATCAC----TGCTGTGCCCTGGAG--C-CTGGGTTTGT--GGGGACCGGAGACAAG--CCAAGGGCTGTGTCC-AGGTGACTCTGGCAAG---------------TGAC-----TTTCTCACACTGGAGA-----GAGGTGACTGG-------------------------------------GGT---------------------------CACCACGTGT i canFam3.chr17 C 0 I 41 s dasNov3.JH580157 592281 212 + 2232271 ATAGAACTGGC---TAGA-TCACT-GT------TATCAT----TGTCATTAGGGAACGAATACTGGATTCATCAAAGGGCCAGAGACAAGACTGACA-GTTGTGTCCCTtgtgact-tgacaagacaccatctctctg-agacttggttttctcatgcaaaaaaaaaaaaaagtgaatggtatctgcctttcttGTTTGTGGATCAGCAGGACTTTTATT---------------------------CACTCAGTAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I e saiBol1.JH378218 3126754 62 - 7082604 I e proCoq1.NW_012151163v1 978389 778 + 1238772 I a score=441490.000000 s hg38.chr2_KI270769v1_alt 74271 51 + 120616 CCAGCAAGTGGCTGTGATGGGCCG------GCATGAGTGG-GCAGATGGACAGTGAGA s panTro5.chr2A 3536068 51 + 111504155 CCAGCAAGTGCCTGTGATGGGCCG------GCATGAGTGG-GCAGATGGACAGTGAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396815 51 + 114371477 CCAGCAAGTGCCTGTGATGGGCCG------GCATGAGTGG-GCAGATGGACAGTGAGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274649 51 + 637652 CCAGCAAGTGCCTGTGATGGGCCG------GCATGAGTGG-GCAGATGGACAGTGAGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070620 51 + 81552678 CCACCAAGTGCCTGTGATGGGCTG------GCATGGGTGG-GCAGATGGACAGTGAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3333384 51 + 108979918 CCACCAAGTGCCTGCGATGGGCCG------GCATGAGCAG-GCAGATGGACAGTGAGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5044524 51 - 111193037 CCACCAAGTGCCTGCGATGGGCCG------GCATGAGCAG-GCAGATGGACAGTGAGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3437189 51 + 3644372 CCACCAAGTGCCTGCGATGGGCCG------GCATGAGCAG-GCAGATGGACAGTGAGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3392406 51 - 10304083 CCACCAAGTGCCTGCGATGGGCCG------GCATGAGCGG-GCAGATGGACAGTGAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3488344 51 - 107702431 CCACCAAGTGCCTGCGATGGGCCA------GCATGAGCGG-GCAGGTGGACAGTGAGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1025310 51 + 1565135 CCACCAAGTGCCTGCGATGGGCCG------GCATGAGCGG-GCAGATGGACAGTGAGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3389939 51 - 13651311 CCACCAAGTGCCTGCGATGGGCTG------GCATGAGCGG-GCAGATGGACAGTGAGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3481964 51 - 108792865 CCACCAAGTGCCTTTGATGGGCGG------GTGTGATTGG-GCAGATGGACAGTGAAA i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 612149 51 + 5243153 CCACCAAGTGCCTGTGATGGGTGG------GCGTGATTGG-GCAGATGGACAGTGAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3355686 51 + 7587287 CCACCAAGTGCCTGTGATGGGCGG------GCATGACTGG-GCAGATGGACAGTGAAA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2559622 36 + 5252280 CAGCCACCCGCCCACAAC---------------------A-ACAGAGATACAGGGAGA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91431125 31 - 120129022 CAAGGAGGGGCT--------GCAG------GCAGGAGTG-------------GTGTGA i mm10.chr12 C 0 C 0 s dasNov3.JH580157 592493 58 + 2232271 CAACCACATGCCTACTGTGGGCAGAGCAGTGGGTGTGTGGAGCAGATAAACACTAAAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I e canFam3.chr17 2056832 41 + 64289059 I e saiBol1.JH378218 3126754 62 - 7082604 I e proCoq1.NW_012151163v1 978389 778 + 1238772 I a score=502491.000000 s hg38.chr2_KI270769v1_alt 74322 54 + 120616 CTGT-GCTGCCAG----GCCTTGCCCTTGAGGAGGGGCCACGG--GCCAGA------CCACCACAGG- s panTro5.chr2A 3536119 54 + 111504155 CTGT-GCTGCCAG----GCCTTGTCCTTGAGGAGGGGCCATGG--GCCAGA------CCACCACAGA- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396866 54 + 114371477 CTGT-GCTGCCAG----GCCTTGTCCTTGAGGAGGGGCCATGG--GCCAGA------CCACCACAGA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274700 54 + 637652 CTGT-GCTGCCAG----GCCTTGTCCTTGAGGAGGGGCCACAG--GCCAGA------CCACCACAGA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070671 54 + 81552678 CTGT-GCTGCCAG----GCCTTGTCCTTGAGGAGGGGCCGCGG--GCCAGA------CCACCACAGA- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3333435 54 + 108979918 CGGT-GCTGCCAG----GCCTTGTCCTTGAGGAGGGGCTGCGG--GCCAGA------CCACCACAGA- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5044575 54 - 111193037 CGGT-GCTGCCAG----GCCTTGTCCTTGAGGAGGGGCTGCGG--GCCAGA------CCACCACAGA- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3437240 54 + 3644372 CGGT-GCTGCCAG----GCCTTGTCCTTGAGGAGGGACTGCGG--GCCAGA------CCACCACAGA- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3392457 54 - 10304083 CGGT-GCTGCCAA----GCCTTGTCCTTGAGGAGGGGCTACGG--GCCAGA------CCACCACAGA- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3488395 54 - 107702431 CGGT-GCTGCCAG----GCCTTGTCCTTGAGGAGGGGCCGCGG--GCCAGA------CCACCACAGA- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1025361 54 + 1565135 CGGT-GCTGCCAG----GCCTTGTCCTTGAGGAGGGGCTGCGG--GCCAGA------CCACCACAGA- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3389990 54 - 13651311 CGGT-GCTGCCAG----GCCTTGTCCTTGAGGAGGGGCCGCGG--GCCAGA------CCACCACAGA- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482015 56 - 108792865 CGGT-GTTGCCAG----GCCTTGCCCTTGAGGAGAGGCTATCA--GCCAGA----GGCCACTACAGA- i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 612200 57 + 5243153 CGGT-GTTGCCAG----GCCTTGCCCTTGAGGAGAGGCCATCA--GCCAGA---GGGCTACCACAGA- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3355737 56 + 7587287 CGGT-GTTGCCAG----GCCTTGCCCTTGAGGAGAGGCCATCA--GCCAGA----GGCCACCACAGA- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2559658 61 + 5252280 TGGTGGCCACAAG----GCCTTGCCCTTAAGGAAGGACCGTGG--GGTGGCGTGGAGCTGCCACAGG- i otoGar3.GL873658 C 0 I 6 s mm10.chr12 91431156 41 - 120129022 GGCT-GCTGCTAG-----------------GAAGGTGCACAGA--GCTGAA------GCACTGAAGA- i mm10.chr12 C 0 C 0 s canFam3.chr17 2056873 51 + 64289059 CCCC-GCGGGCAG----GCTCTGGGCGCAAGGGAGTGCAGATG--GTCGGG---------CCACAGA- i canFam3.chr17 I 41 C 0 s dasNov3.JH580157 592551 57 + 2232271 ---T-GAGGACAGCACAGCCTTGCCCTTGAGAAAGCGCCACAGAAGCCAGT------CC-TTGCAGTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I e saiBol1.JH378218 3126754 62 - 7082604 I e proCoq1.NW_012151163v1 978389 778 + 1238772 I a score=107208.000000 s hg38.chr2_KI270769v1_alt 74376 13 + 120616 CAGGGC-AGAGCGA s panTro5.chr2A 3536173 13 + 111504155 GAGGGC-AGAGCGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3396920 13 + 114371477 GAGGGC-AGAGCGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274754 13 + 637652 CAGGGC-AGAGCGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070725 13 + 81552678 CAGGGC-AGAGCGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3333489 13 + 108979918 CAGAGC-AGAGTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5044629 13 - 111193037 CAGAGC-AGAGTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3437294 13 + 3644372 CAGAGC-AGAGTGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3392511 13 - 10304083 CAGAGC-AGAGTGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3488449 13 - 107702431 CAGAGC-AGAGTGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1025415 13 + 1565135 CAGAGC-AGAGTGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390044 13 - 13651311 CAGAGC-AGAGTGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482071 13 - 108792865 CAGGGC-AGAGTGG i calJac3.chr14 C 0 I 32 s cebCap1.NW_016107454v1 612257 13 + 5243153 CAGGGC-AGAGTAG i cebCap1.NW_016107454v1 C 0 I 32 s aotNan1.NW_018509326v1 3355793 13 + 7587287 CAGGGC-AGAGCGG i aotNan1.NW_018509326v1 C 0 I 31 s mm10.chr12 91431197 10 - 120129022 CAAAGC-TCAA--- i mm10.chr12 C 0 C 0 s canFam3.chr17 2056924 14 + 64289059 CAGGGCTCCAATGG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 592608 13 + 2232271 TAGGGT-AGAGGGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I e saiBol1.JH378218 3126754 62 - 7082604 I e proCoq1.NW_012151163v1 978389 778 + 1238772 I e otoGar3.GL873658 2559719 6 + 5252280 I a score=1126335.000000 s hg38.chr2_KI270769v1_alt 74389 149 + 120616 TGAGGAATCCAGC---AAAGGCCTTTG-----------------GCAGAAACCAGATGCCCTGAGCACGGCAGCTGGCACAGCGCTCCTACATGTTCCCCCGTAGCTGTCTCTAAAACGGGAA-GGTCTCATGCGTGCCGC-ACGGAGCACA-CGACATTCACGCA--CTCTGC s panTro5.chr2A 3536186 149 + 111504155 TGAGGAATCCAGC---AAAGGCCTTTG-----------------GCAGAAACCAGATGCCCTGAGCACGGCAGCTGGCACAGCGCTCCTAAATGTTCCCCCGTAGCTGTCTCTAAAACGGGAA-GGTCTCATGCGTGCCGC-ACGGAGCACA-CGACATTCACGCA--CTCTGC i panTro5.chr2A C 0 I 5 s panPan2.chr2A 3396933 149 + 114371477 TGAGGAATCCAGC---AAAGGCCTTTG-----------------GCAGAAACCAGATGCCCTGAGCACGGCAGCTGGCACAGCGCTCCTAAATGTTCCCCCGTAGCTGTCTCTAAAACGGGAA-GGTCTCATGCGTGCCGC-ACGGAGCACA-CGACATTCACGCA--CTCTGC i panPan2.chr2A C 0 I 5 s gorGor5.CYUI01015435v1 274767 149 + 637652 TGAGGAATCCAGC---AAAGGCCTTTG-----------------GCAGAAACCAGATGCCCTGAGCACGGCAGCTGGCACAGCGCTCCTAAATGTTCCCCCGTAGCTGTCTCTAAAACGGGAA-GGTCTCACGCGTGCCGC-ACGGAGCACA-CGACATTCATGCA--CTCTGC i gorGor5.CYUI01015435v1 C 0 I 5 s nomLeu3.chr19 3070738 149 + 81552678 TGAGGAATCCAGC---AAAGGCCTTTG-----------------GCAGAAACCAGATGCCCTGAGCACGGCAGCTGGCACAGCGCTCCTAAATGTTCCCCTGCAGCTGTCTCTGAAACGGAAG-GGTCTCATGCGTGCCGC-ACAGAGCACA-CGACATTCACGCA--CGCTGC i nomLeu3.chr19 C 0 I 5 s rheMac8.chr13 3333502 148 + 108979918 TGAGGGATCCAGC----AAGGCCCTTG-----------------GCAGAAAGCAGATGCCCTGAGCATGGCAGCTGGCACAGCGCTCCTAAATGTTCCCCCGTAGCTGTCTCCGAAACGGGAG-GGTCTCACACGTGCCAC-AGAGACCAGA-CGACATTCACGCA--TTCTGC i rheMac8.chr13 C 0 I 5 s macFas5.chr13 5044642 148 - 111193037 TGAGGGATCCAGC----AAGGCCCTTG-----------------GCAGAAAGCAGATGCCCTGAGCATGGCAGCTGGCACAGCGCTCCTAAATGTTCCCCCGTAGCTGTCTCCGAAACGGGAG-GGTCTCACACGTGCCAC-AGAGACCAGA-CGACATTCACGCA--TTCTGC i macFas5.chr13 C 0 I 5 s macNem1.NW_012011978v1 3437307 149 + 3644372 TGAGGGATCCAGC---AAAGGCCCTTG-----------------GCAGAAAGCAGATGCCCTGAGCATGGCAGCTGGCGCAGCGCTCCTAAATGTTCCCCCGTAGCTGTCTCCGAAACGGGAG-GGTCTCACACGTGCCAC-AGAGACCAGA-CGACATTCACGCA--TTCTGC i macNem1.NW_012011978v1 C 0 I 5 s cerAty1.NW_012000820v1 3392524 149 - 10304083 TGAGGGATCCAGC---AAAGGCCCTTG-----------------GCAGAAAGCAGATGCCCTGAGCACGGCAGCTGGCACAGCGCTCCTAAATGTTCCCCCGTAGCTGTCTCCGAAACGGGAG-GGTCTCACGCGTGCCAC-AGAGACCAGA-CGACATTCACACA--TTCTGC i cerAty1.NW_012000820v1 C 0 I 5 s chlSab2.chr14 3488462 148 - 107702431 TGAGGGATCCAGC---AAAGGCCCTTG-----------------GCAGAAAGCAGATGCCCTGAGCACGGCAGCTGGCACAGCGCTCCTAAATGTT-CCCCGTAGCTGTCTCCGAAACGGGAG-GGTCCCACGCGTGCCAC-AGAGACCAGA-CGACATTCACGCA--CTCTGC i chlSab2.chr14 C 0 I 29 s manLeu1.NW_012104432v1 1025428 149 + 1565135 TGAGGGATCCAGC---AAAGGCCCTTG-----------------GCAGAAAGCAGATGCCCTGAGCACGGCAGCTGGCACAGCGCTCCTAAATGTTCCCCCGTAGCTGTCTCCGAAACAGGAG-GGTCTCACGCGTGCCAC-AGAGACCAGA-CGACATTCACACA--TTCTGC i manLeu1.NW_012104432v1 C 0 I 5 s colAng1.NW_012118821v1 3390057 149 - 13651311 TGAGGGATCCAGC---AAAGACTCTTG-----------------GCAGAAAGCAGATGCCCTGAGCATGGCAGCTGGCACAGCGCTCCTAAATGTCCCCCCGTAGCTGTCTCCGAAACGGGAG-GGTCTCACGCGTGCCAC-AGAGAGCAGA-CGACATTCATGCA--TTCTGC i colAng1.NW_012118821v1 C 0 I 5 s calJac3.chr14 3482116 125 - 108792865 TGAGGGATCCAGA---GAAGGCCCTTG-----------------GCAGAAAGCAGATGGCCCGAGCACAGCAGCCAGCAGAACGTTCCTAAATGTTCCCCCATAGCTGTCT--------------------------CCAC-AGAGAGCAGA-TGACAGTCATGCATTCTCTG- i calJac3.chr14 I 32 C 0 s saiBol1.JH378218 3126816 125 - 7082604 TGAGGGATCCGGA---GAAGGGCCTTG-----------------GCAGAAAGCAGAT-GCCCGAGCACAGCGGCCAGCAGAGCACTCCTAAATGTTCCCCCCCAGCTGTCC--------------------------CCAC-AGAGAGCAGA-CGACAGTCACACATTCTCTGC i saiBol1.JH378218 I 62 C 0 s cebCap1.NW_016107454v1 612302 120 + 5243153 TGGGGGATCCAGA---GAAGGCCCTTC-----------------GCAGAAAGCAGAT-GCCCGAGCACAGCGGCCGGCAGAGCGCGCCTAGATGTT-CCCTGTAGCTGTCT--------------------------CCAC---AGAGCAGA-CGACAGTCACGCA--CTCTGG i cebCap1.NW_016107454v1 I 32 C 0 s aotNan1.NW_018509326v1 3355837 126 + 7587287 TGAGGGATCCAGA---GAAGGCCCTTG-----------------GCAGAAAGCAGATGCCCCGAGCGCAGCAGCTGGCAGAGCGCTCCTAAATGTTCCCCCACGGCTGTCT--------------------------CCAC-AGAGAGCAGA-CGACATTCACGCATTCTCTGC i aotNan1.NW_018509326v1 I 31 C 0 s mm10.chr12 91431207 114 - 120129022 ------------------------TCT-----------------GCAGGATACAGACGCCAAGGCCACAGCGCCTT---CAGTGCCTCTGGACACCTGCC--------TCTATAGAGCAGCAG-TAACT---ACATGTCATTATAGGTCACAGTGACATCCATATG--CCCT-- i mm10.chr12 C 0 C 0 s canFam3.chr17 2056938 111 + 64289059 AGGGGAGGGCGGT---GAAGGCAC---------------------------------------AGCACAGGAGCCAGTGGAAC-CCGTTCAATGTC-CCACACACACACCTCTGATTCCGGCG-GAGTT-------GCCGC-----AGCACA-TGCCAA-CATCCA--CTGT-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 592621 167 + 2232271 -GAAGGGCGCGTCTAGAAAGGTATATGAAGATCCAGAGAGAAATGGAGAGTACAAATGCC--AAGTACAATAGCTATCAAAGCCTTTTTAAATGTTTCTAGATAAATAGTTCTAAAATAGTAGAAATTTCTTGAATCATGT-AGAGAACAAA-TAGTACTCAAGTA--TTCTAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I e proCoq1.NW_012151163v1 978389 778 + 1238772 I e otoGar3.GL873658 2559719 6 + 5252280 I a score=123930.000000 s hg38.chr2_KI270769v1_alt 74538 27 + 120616 -----AAGGCCGACCTCCATCAC-ATACTCAGC-- s panTro5.chr2A 3536340 28 + 111504155 -----AAGGCCGACCTCCATCGCCATACTCAGC-- i panTro5.chr2A I 5 C 0 s panPan2.chr2A 3397087 28 + 114371477 -----AAGGCCGACCTCCATCGCCATACTCAGC-- i panPan2.chr2A I 5 C 0 s gorGor5.CYUI01015435v1 274921 28 + 637652 -----AAGGCCGACCTCCATCGCCATACTCAGC-- i gorGor5.CYUI01015435v1 I 5 C 0 s nomLeu3.chr19 3070892 28 + 81552678 -----GAGGCCGACCTCCATCGCCATACTCAGC-- i nomLeu3.chr19 I 5 C 0 s rheMac8.chr13 3333655 28 + 108979918 -----AAGGGTGACCCCCATTGCCATTCTCAGC-- i rheMac8.chr13 I 5 C 0 s macFas5.chr13 5044795 28 - 111193037 -----AAGGGTGACCCCCATTGCCATTCTCAGC-- i macFas5.chr13 I 5 C 0 s macNem1.NW_012011978v1 3437461 28 + 3644372 -----AAGGGTGACCCCCATTGCCATTCTCAGC-- i macNem1.NW_012011978v1 I 5 C 0 s cerAty1.NW_012000820v1 3392678 28 - 10304083 -----AAGGGTGACCCCCATTGCCATCCTCAGC-- i cerAty1.NW_012000820v1 I 5 C 0 s manLeu1.NW_012104432v1 1025582 28 + 1565135 -----AAGGGTGACCCCCATTGCCATCCTCAGC-- i manLeu1.NW_012104432v1 I 5 C 0 s colAng1.NW_012118821v1 3390211 28 - 13651311 -----AAGGGTGGCCCCCGTTGCCATCCTCAGC-- i colAng1.NW_012118821v1 I 5 C 0 s calJac3.chr14 3482241 27 - 108792865 ------GGGGCCACCTCGGTCTCCATGCTCTCC-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126941 28 - 7082604 -----AGGGGCCACCTCGGTCACCACACTCACC-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 612422 28 + 5243153 -----AGGGACCACCTCGGTCACCATACTCACC-- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3355963 28 + 7587287 -----AGGGGCCACCTCGGTCGCCACACTCACC-- i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91431321 6 - 120129022 --------------CACTGT--------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2057049 26 + 64289059 -------GAGCCCCGCCGAGGGTCCTGTGCTGC-- i canFam3.chr17 C 0 I 2 s dasNov3.JH580157 592788 35 + 2232271 TGTGTCGGTCTGACCTGGGACTTTATGCTCAGTAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I e proCoq1.NW_012151163v1 978389 778 + 1238772 I e otoGar3.GL873658 2559719 6 + 5252280 I e chlSab2.chr14 3488610 29 - 107702431 I a score=1580486.000000 s hg38.chr2_KI270769v1_alt 74565 141 + 120616 CTCAGCAAACTTGTTTTGTG-GTTTTTC----------TTTACATGTAAAGGTTTGACCTTAATTTCTAGCATAGAAAACGTTTAAGAGACACTTTAAAAATTTGGCCTATGTATTTGGAGGATGGAGATGAGACAGCGTTCGCCAACTCAC s panTro5.chr2A 3536368 141 + 111504155 CTCGGCAAACTTGTTTTGTG-GTTTTTC----------TTTACATGTAAAGATTTGACCTTAGTTTCTAGCATAGAAAACGTTTAAGAGACACTTTAAAAATTTGGCTTATGTATTTGGAGGATGGAGATGAGACAGCGTTCGCCAACTCAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397115 141 + 114371477 CTCGGCAAACTTGTTTTGTG-GTTTTTC----------TTTACATGTAAAGATTTGACCTTAGTTTCTAGCATAGAAAACGTTTAAGAGACACTTTAAAAATTTGGCTTATGTATTTGGAGGATGGAGATGAGACAGCGTTTGCCAACTCAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 274949 141 + 637652 CTCGGCAAACTTGTTTTGTG-GTTTTTC----------TTTACATGTAAAGATTTGACCTTAGTTTCTAGCATAGAAAACGTCTAAGAGACACTTTAAAAATTTGGCTTATGTATTTGGAGGATGGAGATGAGACAGCGTTCGCCAACTCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3070920 141 + 81552678 CTCGCCAAATTTGTTTTGTG-GGTTTTC----------TTTACATGTAAAGATTTGACCTTAGTTTCTAGCATAGAAAACGTTTAAGAGACACTTTAAATATTTGGCTTATGTATTTAGAGGATGAAGATGAGACAGCGTTTGCCAAATCAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3333683 140 + 108979918 CTCGGCAAAGTTG-TTTGTG-GGTTTTC----------TCTACATTTAAAGATTTGACCTTAGTTTCTAGCATAGAAAACGTTTAAGAGACACTTTAAAAATTTGGCTTATGTATTTGGAGGATGGAGATGAGACAGCGTTCGCCTATTCAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5044823 140 - 111193037 CTCGGCAAAGTTG-TTTGTG-GGTTTTC----------TCTACATTTAAAGATTTGACCTTAGTTTCTAGCATAGAAAACGTTTAAGAGACACTTTAAAAATTTGGCTTATGTATTTGGAGGATGGAGATGAGACAGCGTTCGCCTATTCAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3437489 140 + 3644372 CTCGGCAAAGTTG-TTTGTG-GGTTTTC----------TCTACATTTAAAGATTTGACCTTAGTTTCTAGCATAGAAAACGTTTAAGAGACACTTTAAAAATTTGGCTTATGTATTTGGAGGATGGAGATGAGACAGCGTTCGCCTATTCAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3392706 141 - 10304083 CTCGGCAAAGTTGTTTTGTG-GGTTTTC----------TCTACATTTAAAGATTTGACCTTAGTTTCTAGCATAGAAAACGTTTAAGAGACACTTTAAAAATGTGGCTTATGTATTTGGAGGATGCAGATGAGACAGCGTTCGCCTATTCAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3488639 141 - 107702431 CTCGGCAAAGCTGTTTTGTG-GGTTTTC----------TCTACATTTAAAGATTTGACCTTAGTTTCTAGCATAGAAAACGTTTAAGAGACACTTTAAAAATTTGGCTTATGTATTTGGAGGTTGGAGATGAGACAGCGTTCGCCTATTCAC i chlSab2.chr14 I 29 C 0 s manLeu1.NW_012104432v1 1025610 141 + 1565135 CTCGGCAAAGTTGTTTTGTG-GGTTTTC----------TCTACATTTAAAGATTTGACCTTAGTTTCTAGCATAGAAAACGTTTAAGAGACACTTTAAAAATTTGGCTTATGTATTTGGAGGATGGAGATGAGACAGCGTTCGCCTATTCAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390239 140 - 13651311 CTCGGCAAAGTTGTTTTGTG-GGTTTTC----------TCTACATTTAAAGATTTGACCTTAGTTTCTAGCATAGAAAA-GTTTAACAGACACTTGAAAAATTTGGCTTATGTATTTGGAGGATGGAGATGAGACAGCGTTCGCCTATTCAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482268 141 - 108792865 CTCGGCAAAGCTGTTTTGTG-AGTTTTC----------TTTACATTTAAAGATTTGTCCTTAGTTTCTAGCATGGAAAATGTTGAAGAGACGCTTTAAAAATTTGGCTTATGTGTTTGGAGGATGGAGCTAAGACAGACTTTGCCAATTCAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3126969 141 - 7082604 CTCGGCAAAGCTGTTTTGTG-AGTTTTC----------TTTACATTTAGAGATCTGACCTTAGTTTCTAGCATGGAAAATGTTTAAGAGATGCTTTAAAAATTTGGCTTATGTGTTTGGAGGATGGAGCTGAGACAGAGTTCGCCAATTCAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 612450 141 + 5243153 CTCGGCAAAGCTGTTTTGTG-AGTTTTC----------TTTACATTTAAAGATTTGACCTTAGTTTCTAGCATAGAAAATGTTTAAGAGGCGCTTTAAAAATTTGGCTTATGTGTTTGGAGGATGGAGCTGAGACAGAGTTCGCCAGTTCAC i cebCap1.NW_016107454v1 C 0 I 20 s aotNan1.NW_018509326v1 3355991 141 + 7587287 CTCGGCAAAGCTGTTTTGTG-AGTTTTC----------TTTACATTCAAAGATTTGACCTTAGTTTCTAGCATAGAAAATGTTTAAGAGACGCTTTAAAAATTTGGCTTATGTGTTTGGAGGATGGAGCTGAGACAGAGTTCGCCAATTCAC i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91431327 132 - 120129022 CATAGTAAACTTGATTGGTG-GGTCATT----------TC--AATGCAGGTATTTTGCCTCAATATTGAGCACAGAAAA-----GTGAGACACTTTCAAAGTGTGGCTTATGTGTTTGAAGGATGAA-ATGGTGCAGAACT-ACGAGTCCTT i mm10.chr12 C 0 C 0 s canFam3.chr17 2057077 146 + 64289059 -TCAGTGAGGGCATCTGGTGCTGTTTTC----TGTGTGTTTGCACTTAAGGACTTTCCCTCAATTTCTAGCGTAGAAAACGTTTAAGATCC-TGTTATAAATTTGGTGCGTGTAATTGGCAGATGGTGACAAGATGAAATTCACTGATTCGC i canFam3.chr17 I 2 C 0 s dasNov3.JH580157 592823 133 + 2232271 CTAAGGTAAGTAGTTTTGTG-GGGTTTTTGTTTGTTTGTTTACACATAAGAACTGTATCTCAATTTTTAGCATAGAAAATGTTTAAGAGAC------------------ATATATTTGAAGAATGGAGACAAGACAAAATTCACAAATTCAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I e proCoq1.NW_012151163v1 978389 778 + 1238772 I e otoGar3.GL873658 2559719 6 + 5252280 I a score=192822.000000 s hg38.chr2_KI270769v1_alt 74706 27 + 120616 --ATGATAACTTTGTCAGGAAAGAGAG----TT s panTro5.chr2A 3536509 27 + 111504155 --ATAATAACTTTGTCAGGAAAGAGAG----TT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397256 27 + 114371477 --ATAATAACTTTGTCAGGAAAGAGAG----TT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275090 27 + 637652 --ATAATAACTTTGTCAGGAAAGAGAG----TT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071061 27 + 81552678 --ATAATAAGTTTGTCAGGAAAGAGAG----TT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3333823 27 + 108979918 --ATAATAACTTTGTCAGGAAAGAGAG----TT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5044963 27 - 111193037 --ATAATAACTTTGTCAGGAAAGAGAG----TT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3437629 27 + 3644372 --ATAATAACTTTGTCAGGAAAGAGAG----TT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3392847 27 - 10304083 --ATAATAACTTTGTCAGGAAAGAGAG----TT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3488780 27 - 107702431 --ATAATAGCTTTGTCAGGAAAGAGAG----TT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1025751 27 + 1565135 --ATAATAACTTTGTCAGGAAAGAGAG----TT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390379 27 - 13651311 --ATAATAACTGTGTCAGGAAAGAGAG----TT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482409 24 - 108792865 -----ATAAC--TGTCGGGACAGAAAGAGTT-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127110 20 - 7082604 -----ATAAC--TGTCAGGACAGAAAG------ i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3356132 20 + 7587287 -----ATAAC--TGTCAGGACAGAGTT------ i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91431459 27 - 120129022 --ACAACAGCTCTGCCAGAAAAGAGGG----AG i mm10.chr12 C 0 C 0 s canFam3.chr17 2057223 20 + 64289059 --TTAATAATTTTGTCAGGAAG----------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 592956 29 + 2232271 ATTTAATAATTTTGTTAGGAAAGAAAG----TT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I e proCoq1.NW_012151163v1 978389 778 + 1238772 I e otoGar3.GL873658 2559719 6 + 5252280 I e cebCap1.NW_016107454v1 612591 20 + 5243153 I a score=87286.000000 s hg38.chr2_KI270769v1_alt 74733 10 + 120616 --AGGTGCAGTC s panTro5.chr2A 3536536 10 + 111504155 --AGGTGCAGTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397283 10 + 114371477 --AGGTGCAGTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275117 10 + 637652 --AGGTGCAGTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071088 10 + 81552678 --AGTTGCAGTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3333850 10 + 108979918 --AGGTGCGGTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5044990 10 - 111193037 --AGGTGCGGTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3437656 10 + 3644372 --AGGTGTGGTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3392874 10 - 10304083 --AGGTGCGGTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3488807 10 - 107702431 --AGGTGCGGTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1025778 10 + 1565135 --AGGTGCGGTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390406 10 - 13651311 --AGGTGAGGTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482433 10 - 108792865 --AGGTGCAGCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127130 10 - 7082604 --AGGTGCAGCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 612611 10 + 5243153 --AGGTGCAGCC i cebCap1.NW_016107454v1 I 20 C 0 s aotNan1.NW_018509326v1 3356152 10 + 7587287 --AGGTGCAGCC i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91431486 9 - 120129022 ---GGACCAAAT i mm10.chr12 C 0 I 1 s dasNov3.JH580157 592985 12 + 2232271 AGAAACACAATC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I e canFam3.chr17 2057243 0 + 64289059 C e proCoq1.NW_012151163v1 978389 778 + 1238772 I e otoGar3.GL873658 2559719 6 + 5252280 I a score=731815.000000 s hg38.chr2_KI270769v1_alt 74743 62 + 120616 CAAGTGAAATATGAATCGCTGTTTAGAAGATGGAAGCAGGAAACAGA-CCCTCAGGCCCAACT s panTro5.chr2A 3536546 62 + 111504155 CAAGTGAAATATGAATCGCTGTTTAGAAGATGGAAGCAGGAAACAGA-CCCTCAGGCCCAGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397293 62 + 114371477 CAAGTGAAATATGAATCGCTGTTTAGAAGATGGAAGCAGGAAACAGA-CCCTCAGGCCCAGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275127 62 + 637652 CAAGTGAAATATGAATTGCTGTTTAGAAGATGGGAGCAGGAAACAGA-CCCTCGGGCCCAACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071098 62 + 81552678 CAAGTGAAATATGAATTGCTGTTTAGAACATGGAAGCAGGAAACAGA-CCCTCAGGCCCAACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3333860 62 + 108979918 CAAGGGAAATATGAATTGCTGTTTAGAAGATGGAAGCAGGAAACAGA-CCCTCAGGCCCAACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045000 62 - 111193037 CAAGGGAAATATGAATTGCTGTTTAGAAGATGGAAGCAGGAAACAGA-CCCTCAGGCCCAACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3437666 62 + 3644372 CAAGGGAAATATGAATTGCTGTTTAGAAGATGGAAGCAGGAAACGGA-CCCTCAGGCCCAACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3392884 62 - 10304083 CAAGTGAAATATGAATTGCTGTTTAGAAGATGGAAGCAGGAAACAGA-CCCTCAGGCCCAACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3488817 62 - 107702431 CAAGTGAAATACGAATTGCTGTTTAGAAGATGGAAGCAGGAAACAGA-CCGTCAGGCCCAACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1025788 62 + 1565135 CAAGTGAAATACGAATTGCTGTTTAGAAGATGGAAGCAGGAAACAGA-CCCTCAGGCCCAACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390416 62 - 13651311 CAAGTGAAATATGAATTGCTGTTTAGAAGATGGAAGCAGGAAACAGA-CCCCCAGGCCCAACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482443 63 - 108792865 CAAGTGAAATACGAGTCCCTGTTGAGAAGCTGGAAGCAGGAAACAGACCCCTCAGGCCCAACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127140 63 - 7082604 TGAGTGAAATACAAGTCACTGTTTAGAAGCTGGAAGCAGGAAACAGACCCCTCAGGCCCAGCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 612621 63 + 5243153 CAAGTGAAATACGAGTCGCTGTTTAGAAGCTGGAAGCAGGAAACAGACCCCTCAGGCCCAGCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3356162 63 + 7587287 CGAGTGAAATACGAGACACTGTTTAGAAGCTGGAAGCAGGAAACAGACCCCTCAGGCCCAACT i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 979167 62 + 1238772 CAAGTGAAGTATGAGTCGCTGCTTAGGAGGTGGAAGCTGGAAACAGA-CCCTCGGGCCCAACT i proCoq1.NW_012151163v1 I 778 I 236 s mm10.chr12 91431496 59 - 120129022 -CAGGGATCTCTGGCTT-CTGCTTAGGAAGTGGGAGCAAAAAGCAG--CCTTTGGGCCAGATG i mm10.chr12 I 1 I 2 s canFam3.chr17 2057243 37 + 64289059 --AGTGA-----GTGTTGCCACCTAGATGGTGGGAGCAAGAGGC------------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 592997 58 + 2232271 CAGTTGAAATATTAATTGCTACTTAGAAGAAGGAAGCTGAAAGAA---TCCT--GACCCAACT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I e otoGar3.GL873658 2559719 6 + 5252280 I a score=12376.000000 s hg38.chr2_KI270769v1_alt 74805 1 + 120616 A s panTro5.chr2A 3536608 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397355 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275189 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071160 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3333922 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045062 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3437728 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3392946 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3488879 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1025850 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390478 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482506 1 - 108792865 A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127203 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 612684 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3356225 1 + 7587287 A i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 593055 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I e mm10.chr12 91431555 2 - 120129022 I e canFam3.chr17 2057280 0 + 64289059 C e proCoq1.NW_012151163v1 979229 236 + 1238772 I e otoGar3.GL873658 2559719 6 + 5252280 I a score=1992683.000000 s hg38.chr2_KI270769v1_alt 74806 253 + 120616 -------------AACCGCGACAGCC-CCCGGTGACAGGCAGGA----CCCCGCCGTT--GCGATGCG--CACAGCTCAGAATCC-CGGCCCGAC--TGCAGTCGGGAGAGCAGCCGCCC----CCTGGCA-GC-CGAGCACCGCGTGCTGG-TTTCCAGCTTCCCCGCCAGCTCCTGCGTCAGCGTGTCCTCTCTCTACAC-CGCGTCTGTATACACTTGTGCTCTTCTACACGTGTGAAAC-C----CACAGTGCTGTTCTCAGCTC-TAAAGTACGT---TGGGTTTTTCTT s panTro5.chr2A 3536609 253 + 111504155 -------------AACCCCGACAGCC-CCTGGTGACAGGCAGGA----CCCCGCCGGT--GCGTTGCG--CACAGCTCAGAATCC-CAGCCCGAC--TGCAGTCGGGAGAGCAGCCGCCC----CCTCGCA-GC-CGAGCACCGTGTGCTGG-TTTCCAGCTTCCCCGCCAGCTCCTGCGTCAGCGTGTCCTCTCTCTACAC-CACGTCTGTGTACACTTGTGCTCTTCTACACGTGTGAAGC-C----CACAGTGCTGTTCTCAGCTC-TAATGTACGT---TGGGTTTTTCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397356 253 + 114371477 -------------AACCCCGACAGCC-CCTGGTGACAGGCAGGA----CCCCGCCGGT--GCGTTGCG--CACAGCTCAGAATCC-CAGCCCGAC--TGCAGTCGGGAGAGCAGCCGCCC----CCTCGCA-GC-CGAGCACCGCGTGCTGG-TTTCCAGCTTCCCCGCCAGCTCCTGCGTCAGCGTGTCCTCTCTCTACAC-CACGTCTGTGTACACTTGTGCTCTTCTACACGTGTGAAGC-C----CACAGTGCTGTTCTCAGCTC-TAATGTACGT---TGGGTTTTTCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275190 253 + 637652 -------------AACCCCGACAGCC-CCCGGTGACAGGCAGGA----GCCCGCCGGT--GCGATGCG--CACAGCTCGGAATCC-CGGCCCGAC--TGCAGTCGGGAGAGCAGCCGCCC----CCTCGCA-GC-CGAGCACCGCGTGCTGG-TTTCCAGCTTCCCCGCCAGCTCCTGCGTCATTGTGTCCTCTCTCTACAC-CGCGTCTGTGTACACTTGTGCTCTTCTACACGTGTGAAAC-C----CACAGTGCTGTTCTCAGCTC-TAAAGTACGT---TGGGTTTTTCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071161 247 + 81552678 -------------AACCCCGACAGCC-CCCGGTGACAGGCAGGA----CCCTGCCAGC--GTGATGCA--CACGGCTCAGAATCC-CGGCCCGAC--TGCAGTCGGGAGAGCAGCCGCCC----CCTCGCA-GC-CGAGCACCGCGTGCTGG-TTTCCAGCTTCCCC-CCAGCTCCTGTGTCAGCGTGTC--CTCTCCACAC-C---TCTTTATACGCTTGTGCTCTTCTACACGTGTGAAAC-C----CACAGTGCTGTTCTCAGCTC-TAAAGTACGT---TGGGGTTTTCTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3333923 253 + 108979918 -------------AACCCCGACAGCC-CCCGATGACAGGCAGGA----CCCCGCCTGC--GCGACGCA--CACAGCTCAGAATCC-CAGCCTGAC--TGCAGTTGGGAGAGCAGCCGCCC----CCTCCCA-GC-CGAGCGCCGCGTGCTGG-TTTCCAGCTTCCCCGCGGGCTCATGTGTCAGCGTGTCCTCTCTCCACAC-CGCGTCTGTATACGCTTGTGCTCTTCTACACGTGTGAAAC-C----CGCAGTGCTTTTCTCAGCCC-TGAGGTACGC---TGGGTTTTTCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045063 253 - 111193037 -------------AACCCCGACAGCC-CCCGATGACAGGCAGGA----CCCCGCCTGC--GCGACGCA--CACAGCTCAGAATCC-CGGCCTGAC--TGCAGTTGGGAGAGCAGCCGCCC----CCTCCCA-GC-CGAGCGCCGCGTGCTGG-TTTCCAGCTTCCCCGCCGGCTCGTGTGTCAGCGTGTCCTCTCTCCACAC-CGCGTCTGTATACGCTTGTGCTCTTCTACACGTGTGAAAC-C----CGCAGTGCTTTACTCAGCCC-TGAGGTACGC---TGGGTTTTTCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3437729 253 + 3644372 -------------AACCCCGACAGCC-CCCGATGACAGGCAGGA----CCCCGCCTGT--GCGACGCA--CACAGCTCAGAATCC-CGGCCTGAC--TGCAGTTGGGAGAGCAGCCGCCC----CCTCCCA-GC-CAAGCGCCGCGTGCTGG-TTTCCAGCTTCCCCGCCGGCTCGTGTGTCAGCGTGTCCTCTCTCCACAC-CGCGTCTGTATACGCTTGTGCTCTTCTACACGTGTGAAAC-C----CGCAGTGCTTTTCTCAGCCC-TGAGGTACGC---TGGGTTTTTCTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3392947 253 - 10304083 -------------AACCCTGACAGCC-CCCGATGACAGGCAGGA----CCCCGCCTGC--GCGATGCA--CACAGCTCAGAATCC-CGGCCTGAC--TGCAGTTGGGAGAGCAGCCGCCC----CCTCCCA-GC-CGAGCGCCGCGTGCTGG-TTTCCAGCTTCCCCGCCAGCTCGTGTGTCAGCGTGTCCTCTCTCCACAC-CGCGTCTGTATACGCTTGTGCTCTTCTACACGTGTGAAAC-C----CGCAGTGCTTTTCTCAGCCC-TGAGGTACGC---TGGGTTTTTCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3488880 253 - 107702431 -------------AACCCCAATGGCC-CCCGATGACAGGCAGGA----CCCCGCCTGC--GCGATGCA--CACAGCTCAGAATCC-CGGCCTGAC--TGCAGTTTGGAGAGCAGCCGCCC----CCTCACA-GC-CGAGCGCCGCGTGCTGG-TTTCCAGCTTCCCCGCCAGCTCGTGTGTCAGCGTGTCCTCTCTCCACGC-CGCGTCTGTATACCCTTGTGCTCTTCTACACGTGTGAAAC-C----CGCAGTGCTTTTCTCAGCTC-TGAGGTACGC---TGGGTCTTTCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1025851 253 + 1565135 -------------AACCCTGACAGCC-CCCAATGACAGGCAGGA----CCCCGCCTGC--GCGACGCA--CACAGCTCAGAATCC-CAGCCTGAC--TGCAGTTGGGAGAGCAGCCACCC----CCTCCCA-GC-CGAGCGCCGCGTGCTGC-TTTCCAGCTTCCCCGCCAGCTCGTGTGTCAGCGTGTCCTCTCTCCACAC-CGCGTCTGTATATGCTTGTGCTCTTCTACACGTGTGAAAC-C----CGCAGTGCTTTTCTCAGCCC-TGAGGTACGC---TGGGTTTTTCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390479 251 - 13651311 -------------AACCCTGACAGCC-CCCGATAACAGGCAGGA----CCCCGCCTGC--GCGATGCA--CACAGCTCAGAATCC-CGGCCTGAC--TGCAGTTGGGAGAGCAGCCGCCC----CCTCACA-GC-CGAGCACCGCGTGCTGG-TTTCCGG-TTCCCCGCCAGCGCATGTGTCAGCGTGTCCTCGCTCCACAC-CGCGTCTGTATACGCGTGTGCTCTTCTACAC-TGTGAAAC-C----CGCAGTGCTTTTCTCAGCTC-TGAGGTATGC---TGGGTTTTTCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482507 217 - 108792865 -------------AACCCCGACAGCC-CCCG-TGACAGGCAGGA----AACCGCCTGC--CCGATGCA-----GGCTCAGAATCC-CAGCCTTAC----CAGTCGGGAGGGCGGC--------------------GGAGCACCACGTGCTGG-TGTCCAGCCTCTCCGCCAGCTCACGTGCCAGCGTGTC--CTCTCCACAC-TGCATCTGTACATGCTCGTGCTCTTC-AACTGTGTGAAGC-C----CACAGTGCTGTCCTCAG-----------------TGTGTCTTTCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127204 222 - 7082604 -------------AACCCCGACAGCC-CCCG-TGACAGGGAGGA----CAGCGCCTGC--CCGATGCA--CACGGCTCAGAGTCC-CAGCCTGAC--TGCAGTTGCGAGGGCGAC---------------------CAGCACCACACGCTGC-TGTCCAGCCTCTCCGCCAGGCCACGTGCCCGCGTGTC--CTGTGCACAC-CGCATCTGTACACGCTCATGCTCTTCTCAGTGTGTGAAGC-C----CACAGTGCTGTTCTCAG-----------------GGTGTCTTTCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 612685 223 + 5243153 -------------AACCCCAACAGCC-CCCG-TGACAGGCAGGA----CACCGCCTGC--CCAACACA--CACGGCTCAGAATCC-CAGCCTGAC--TGCAGTCGGGCGGGCGGC--------------------CGGGCACCCCGCGCTGG-TGTCCAGCCTCTCCACCAGCCCGCGTGCCAGCGTGTC--CTCTCCACAC-CCCATCTGTACACGCTCATGCTCCTCTGAATGTGTGAAGC-C----CACAGTGCTGTTCTCAG-----------------CGTGTCTTTCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3356226 221 + 7587287 -------------AACCCCGACAGCC-CCCG-TGACGGGCAGGA----CACTGCCTGC--CCGGTGCA--CACAGCTCAGAATCC-TGGCCTCAC--CGCAGTCGGGAGGGCAGC--------------------CGAGCACCACGCGCTGG-TGTCCAGCCTCCTCGCCAGCTCACGTGCCAGCGTGTC--CGTGCCACAC-CGCATCTGTACATGCTCGTGCTCTTCCGACTGTGTGAGGC-C----CACAGTGCTGTTCT--G-----------------TGTGTCTTTCTT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2559725 241 + 5252280 -------------AAGCCCCATAATC-CTCAGGGACAGCCAGAA----TCACTCACTT--GTGTCACA--CAGATCTCAGAATCC-TGGTTTGAT--TG----TCAGAGGGCAGCCCCTTG---GGTCTCAGGC-TGAGAACCTTGCTCTGG-TGTCCTGTTTTCCC-CTAGTTCAGAGGTCAGCGTGTCCTCTGTCCACGCACCCATCTGTGTACA--TGTGCTCTTCTGAATGTGCAAA---C----CTGAGGGATTTGTCGAGCGC-TAAA---------CGTGTCCCCCAT i otoGar3.GL873658 I 6 I 1 s mm10.chr12 91431557 216 - 120129022 -------------AGGTCCAGAGCCC-TGTGGTAACAAG-AGGA-----------TGT--ATGTCACA--CAGAATTCAGAGTCCTCAGTCCTAC--CACCATTGGTGGGAGGG------------------GT-CTAGCA-------CTAG-CCTGCTGCCCCCACAGCtgtgtgtgtgtgtgtgtgtctgtg---------tgtgtgtgtgtATCCCTGGACCATAATGCAC-TGCAAAGCGC----TGTACAGCTTCTC-CAGCTCACGACATGCTT---TTGGTCTCTT-- i mm10.chr12 I 2 C 0 s canFam3.chr17 2057280 215 + 64289059 ------------------------CC-CACAGCGAGAGGAAGGGGTTTCCTGACTCTG--GCTTCCAA--CAGAACTTGGAACCC-CATGTGACG--TGTGGTCAGGCAGGCCTGTGCTCA---CCTCGCG-GG-C--------------------------------CCGGCTCCCGTGTTGGCGTGCCCCCTCTGCACACGTGAGTCTACAGGTACTTGAGC--TTCTAACTTCGTAAGAC-A----GAGAGTGATCTTCTTAACTC-AAAAATGCCC---TTCCACTTTTTC i canFam3.chr17 C 0 I 2 s dasNov3.JH580157 593056 266 + 2232271 AATGACCAGAAGCCACTCAGATGGCCTCTCAATGTTAGGAATAA----TTTTGCCCACTGTGGTTGCAACCAAAACTTAGAATCC-TGGTGTGACATTGCTGTCAGGAGA-CACCTTTCCACTTACTCCAA-GCTCAGGTGTCTTAGGCTGGATTTTCTGCTTTGCTGCCATCTCTT-CGTGGGTGAGTT-------------CGCACCT------ACTTGTTCTCTTCCGAATGTGTTAAAG-CAAAACAGGGATTTTTTTTCATCTT-TAAAATATACTTTTGGGTTTTTCTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2666836 755 - 159902609 I e proCoq1.NW_012151163v1 979229 236 + 1238772 I a score=1934741.000000 s hg38.chr2_KI270769v1_alt 75059 109 + 120616 CCCACAGGATTATGTGCTGGCCGTGGAGGCGTATCATTCGGTTATCAAGTATTACCCAGAGCAAGAGCCCCAGCTGCTCAGCGGCATCGGCCGGATTTCCCTGC----AGGTA s panTro5.chr2A 3536862 109 + 111504155 CCCACAGGATTATGTGCTGGCCGTGGAGGCGTATCATTCGGTTATCAAGTATTACCCAGAGCAAGAGCCCCAGCTGCTCAGCGGCATCGGCCGGATTTCCCTGC----AGGTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397609 109 + 114371477 CCCACAGGATTATGTGCTGGCCGTGGAGGCGTATCATTCGGTTATCAAGTATTACCCAGAGCAAGAGCCCCAGCTGCTCAGCGGCATCGGCCGGATTTCCCTGC----AGGTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275443 109 + 637652 CCCACAGGATTATGTGCTGGCCGTGGAGGCGTATCATTCGGTTATCAAGTATTACCCAGAGCAAGAGCCCCAGCTGCTCAGCGGCATCGGCCGGATTTCCCTGC----AGGTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071408 109 + 81552678 CCCACAGGATTACGTGCTCGCCGTGGAGGCGTATCATTCGGTTATCAAGTATTACCCAGAGCAAGAGCCCCAGCTGCTCAGCGGCATCGGCCGGATTTCCCTGC----AGGTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3334176 109 + 108979918 CCCGCAGGATTATGTGCTCGCCGTGGAGGCGTACCATGCGGTTATCAAGTATTACCCAGAGCAAGAGCCCCAGCTGCTCAGCGGCATCGGCCGGATTTCCCTGC----AGGTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045316 109 - 111193037 CCCGCAGGATTATGTGCTCGCCGTGGAGGCGTACCATGCGGTTATCAAGTATTACCCAGAGCAAGAGCCCCAGCTGCTCAGCGGCATCGGCCGGATTTCCCTGC----AGGTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3437982 109 + 3644372 CCCGCAGGATTATGTGCTCGCCGTGGAGGCGTACCATGCGGTTATCAAGTATTACCCAGAGCAAGAGCCCCAGCTGCTCAGCGGCATCGGCCGGATTTCCCTGC----AGGTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393200 109 - 10304083 CCCGCAGGATTACGTGCTCGCCGTGGAGGCGTACCATGCGGTTATCAAGTATTACCCAGAGCAAGAGCCGCAGCTGCTCAGCGGCATCGGCCGGATTTCCCTGC----AGGTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489133 109 - 107702431 CCCGCAGGATTATGTGCTCGCCGTGGAGGCGTACCATTCGGTTATCAAGTATTACCCAGAGCAAGAGCCCCAGCTGCTCAGCGGCATCGGCCGGATTTCCCTGC----AGGTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026104 109 + 1565135 CCCGCAGGATTATGTGCTCGCCGTGGAGGCGTACCATGCGGTTATCAAGTATTACCCAGAGCAAGAGCCTCAGCTGCTCAGCGGCATCGGCCGGATTTCCCTGC----AGGTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390730 109 - 13651311 CCCGCAGGATTATGTGCTCGCCGTGGAGGCGTACCATTCGGTTATCAAGTACTACCCAGAGCAAGAGCCCCAGCTGCTGAGCGGCATCGGCCGGATTTCCCTGC----AGGTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482724 109 - 108792865 CCCGCAGGATTACGTGCTCGCCGTGGAGGCCTATCATTCGGTTATCACATATTACCCAGAGCAGGAGCCCCAGCTGCTCAGCGGCATCGGCCGGATCGCCCTGC----AGGTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127426 113 - 7082604 CCCGCAGGATTACGTGCTCGCCGTGGAGGCCTATCATTCGGTCATCACGTATTACCCAGAGCAGGAGCCCCAGCTGCTCAGCGGCATCGGACGGATCGCCCTGCAGGTAGGTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 612908 109 + 5243153 CCCGCAGGATTACGTGCTCGCCGTGGAGGCCTATCATTCGGTCATCACGTATTACCCAGAGCAGCAGCCCCAGCTGCTCAGCGGCATCGGACGGATCGCCCTGC----AGGTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3356447 109 + 7587287 CCTGCAGGATTACGTGCTCGCCGTGGAGGCCTATCATTCCGTTATCACGTATTACCCAGAGCAGGAGCCCCAGCTGCTCAGCGGCATCGGACGGATCGCCCTGC----AGGTA i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2667591 109 - 159902609 CCCGCAGGACTACGTGCTGGCGGTGCAGGCGTACCACGCCGTCATCCAGTGCTGCCCGGAGCAGGAGCCGCAGCTGCTCAGCGGCATCGGCCGCATCTCCCTGC----AGGTA i micMur3.chr8 I 755 C 0 s proCoq1.NW_012151163v1 979465 109 + 1238772 CCCGCAGGACTACGTGCTGGCCGTGCAGGCGTATCACGCCGTCATCCAGTGCTGCCCGGAGCAGGAGCCGCAGCTGCTCAGCGGCATCGGCCGCATCTCCCTGC----AGGTA i proCoq1.NW_012151163v1 I 236 C 0 s otoGar3.GL873658 2559967 109 + 5252280 CCCCTAGGACTATGTGCTCGCCGTGGAGGCTTACCGCTCGGTCGCCAGGCACCTCCCAGAGCAGGAGCCGCAGCTACTCAGCGGCATCGGCCGCATCTCCCTGC----AGGTA i otoGar3.GL873658 I 1 C 0 s mm10.chr12 91431773 109 - 120129022 ACCATAGGACTATGTGCTGGCTGTGGATGCCTACCTCACAGTAATCAAGTACTACCCGGAGCAGGAGCCACAGCTGCTGAGTGGAATCGGCCGCATTCTCCTCC----AGGTA i mm10.chr12 C 0 C 0 s canFam3.chr17 2057497 109 + 64289059 CCCGTAGGACTATGTGCTGGCTGTGGATGCTTATCACTCAGTTATCCAGTACTACCCAGAGCAGGAGCCACAGCTGCTGAGCGGCATCGGCCGGATCTTCCTCC----AGGTA i canFam3.chr17 I 2 I 259 s dasNov3.JH580157 593322 109 + 2232271 CCCGTAGGATTATGTGCTTGCTGTGGCGGCATATCATTCAGTTATCAAATATTATCCAGAGCAAGAACCTCAGCTGCTGAGTGGAATTGGACGGATTTTCCTTC----AGGTA i dasNov3.JH580157 C 0 C 0 a score=28055.000000 s hg38.chr2_KI270769v1_alt 75168 4 + 120616 CCTG s panTro5.chr2A 3536971 4 + 111504155 CCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397718 4 + 114371477 CCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275552 4 + 637652 CCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071517 4 + 81552678 CCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3334285 4 + 108979918 CGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045425 4 - 111193037 CGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438091 4 + 3644372 CGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393309 4 - 10304083 CGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489242 4 - 107702431 CGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026213 3 + 1565135 CGT- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390839 3 - 13651311 CGT- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482833 4 - 108792865 CCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127539 4 - 7082604 CCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 613017 4 + 5243153 CCTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3356556 4 + 7587287 CCGG i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2667700 4 - 159902609 CCTG i micMur3.chr8 C 0 I 2295 s proCoq1.NW_012151163v1 979574 4 + 1238772 CCTG i proCoq1.NW_012151163v1 C 0 I 2166 s otoGar3.GL873658 2560076 4 + 5252280 CCTG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91431882 4 - 120129022 CTGG i mm10.chr12 C 0 I 101 s dasNov3.JH580157 593431 4 + 2232271 CCTA i dasNov3.JH580157 C 0 I 4 e canFam3.chr17 2057606 259 + 64289059 I a score=102601.000000 s hg38.chr2_KI270769v1_alt 75172 22 + 120616 ------------------------------TGCACGGTCAGACATG--------------------------AGCCAG s panTro5.chr2A 3536975 22 + 111504155 ------------------------------TGCACCGTCAGACATG--------------------------AGCCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397722 22 + 114371477 ------------------------------TGCACCGTCAGACATG--------------------------AGCCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275556 22 + 637652 ------------------------------TGCACGGTCAGACATG--------------------------AGCCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071521 11 + 81552678 ------------------------------TGCGCGGT-------------------------------------CAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3334289 22 + 108979918 ------------------------------GGCACGCTCAGATGTG--------------------------AGCCAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045429 22 - 111193037 ------------------------------GGCACGCTCAGATGTG--------------------------AGCCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438095 22 + 3644372 ------------------------------GGCACGCTCAGATGTG--------------------------AGCCAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393313 22 - 10304083 ------------------------------GGCACGCTCAGATGTG--------------------------AGCCAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489246 22 - 107702431 ------------------------------GGCACGCTCAGATGTG--------------------------AGCCAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026216 22 + 1565135 ------------------------------GGCACGCTCAGATGTG--------------------------AGCCAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390842 22 - 13651311 ------------------------------GGCACGCTCAGATATG--------------------------AGCCGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482837 22 - 108792865 ------------------------------TGCCCGGTCAGGTGTG--------------------------AGCCAG i calJac3.chr14 C 0 I 4 s saiBol1.JH378218 3127543 22 - 7082604 ------------------------------TGCGCGGTGAGCTGTG--------------------------AGCCAG i saiBol1.JH378218 C 0 I 4 s cebCap1.NW_016107454v1 613021 22 + 5243153 ------------------------------TGCGCGGTCAGGTGTG--------------------------AGCCAG i cebCap1.NW_016107454v1 C 0 I 28 s aotNan1.NW_018509326v1 3356560 22 + 7587287 ------------------------------TGCGCGGTCAGGTGTG--------------------------AGACAG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2560080 18 + 5252280 -------------------------------CAATGGGAACACAGG--------------------------GGC--- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 593439 78 + 2232271 TACACTAAATAATTATACCGTTACCCTATTATCACTTTCAAGTGAGTTAAAGGGGGCAATAGTTTAAGAAGAAGTTAG i dasNov3.JH580157 I 4 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91431886 101 - 120129022 I e canFam3.chr17 2057606 259 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=-18616.000000 s hg38.chr2_KI270769v1_alt 75194 3 + 120616 A-----------AA s panTro5.chr2A 3536997 3 + 111504155 A-----------AA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397744 3 + 114371477 A-----------AA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275578 3 + 637652 A-----------AA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071532 3 + 81552678 A-----------AA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3334311 14 + 108979918 AGGCACAGGCAAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045451 14 - 111193037 AGGCACAGGCAAAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438117 14 + 3644372 AGGCACAGGCAAAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393335 14 - 10304083 AGGAACAGGCAAAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489268 14 - 107702431 AGGAACAGGCAAAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026238 14 + 1565135 GGGAACAGGCACAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390864 14 - 13651311 AGGAACAGGCAGAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482863 3 - 108792865 -----------GAG i calJac3.chr14 I 4 I 3 s saiBol1.JH378218 3127569 3 - 7082604 -----------GAG i saiBol1.JH378218 I 4 I 2 s aotNan1.NW_018509326v1 3356582 3 + 7587287 -----------AAG i aotNan1.NW_018509326v1 C 0 I 26 s otoGar3.GL873658 2560098 2 + 5252280 ------------AG i otoGar3.GL873658 C 0 I 1 s dasNov3.JH580157 593517 3 + 2232271 ----ACT------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91431886 101 - 120129022 I e canFam3.chr17 2057606 259 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 613043 28 + 5243153 I a score=103350.000000 s hg38.chr2_KI270769v1_alt 75197 17 + 120616 GGCCTTATGAT----AGTTCT s panTro5.chr2A 3537000 17 + 111504155 GGCCTTATGAT----AGTTCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397747 17 + 114371477 GGCCTTATGAT----AGTTCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275581 17 + 637652 GGCCTTATGAT----AGTTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071535 17 + 81552678 GGCCTTATGAT----AGTTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3334325 20 + 108979918 GGCCTTATGAT-AGGAGTTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045465 20 - 111193037 GGCCTTATGAT-AGGAGTTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438131 20 + 3644372 GGCCTTATGAT-AGGAGTTCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393349 20 - 10304083 GGCCTTATGAT-AGGAGTTCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489282 20 - 107702431 GGCCTTATGAT-AGGAGTTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026252 20 + 1565135 GGCCTTATGAT-AGGAGTTCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390878 20 - 13651311 GGCCTTATGAT-AGGAGTTCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482869 19 - 108792865 CGCCCTGTGAT-CAGAGTTC- i calJac3.chr14 I 3 C 0 s saiBol1.JH378218 3127574 19 - 7082604 CGCCCTGTGAT-AGGAGGTC- i saiBol1.JH378218 I 2 C 0 s otoGar3.GL873658 2560101 20 + 5252280 GGGCATAGCCT-CGGGGTGCT i otoGar3.GL873658 I 1 C 0 s dasNov3.JH580157 593520 17 + 2232271 ----TGACTATTAAGAGTTCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91431886 101 - 120129022 I e canFam3.chr17 2057606 259 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 613043 28 + 5243153 I e aotNan1.NW_018509326v1 3356585 26 + 7587287 I a score=20848.000000 s hg38.chr2_KI270769v1_alt 75214 2 + 120616 TT s panTro5.chr2A 3537017 2 + 111504155 TT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397764 2 + 114371477 TT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275598 2 + 637652 TT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071552 2 + 81552678 TT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3334345 2 + 108979918 TT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045485 2 - 111193037 TT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438151 2 + 3644372 TT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393369 2 - 10304083 CT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489302 2 - 107702431 TT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026272 2 + 1565135 TT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390898 2 - 13651311 TT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482888 2 - 108792865 TT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127593 2 - 7082604 TT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 613071 2 + 5243153 TT i cebCap1.NW_016107454v1 I 28 C 0 s otoGar3.GL873658 2560121 2 + 5252280 TT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 593537 2 + 2232271 TC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91431886 101 - 120129022 I e canFam3.chr17 2057606 259 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e aotNan1.NW_018509326v1 3356585 26 + 7587287 I a score=350953.000000 s hg38.chr2_KI270769v1_alt 75216 35 + 120616 GCTCAGATGGGCGACTGTTTGCTTTTAATCATTTT s panTro5.chr2A 3537019 35 + 111504155 GCTCAGATGGGCGAGTGTTTGCTTTTCATCATTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397766 35 + 114371477 GCTCAGATGGGCGAGTGTTTGCTTTTCATCACTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275600 35 + 637652 GCTCGGATGGGCGACTGTTTGCTTTTAATCATTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071554 35 + 81552678 GCTTGGATGGGCGACTGTTTGCTTTTAGTCATTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3334347 35 + 108979918 GCTTGGATGTGCGACTGTTTGCTTTTAATGATTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045487 35 - 111193037 GCTTGGATGTGCGACTGTTTGCTTTTAATCATTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438153 35 + 3644372 GCTTGGATGTGCGACTGTTTGCTTTTAATCATTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393371 35 - 10304083 GCTTGGATGTGCGACTGTTTGCTTTTAATCATTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489304 35 - 107702431 GCTTGGATGTGTGACTGTTTGCTTTTAATCATTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026274 35 + 1565135 GCTTGGATGTGCGACTGTTTGCTTTTAATCATTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390900 35 - 13651311 GCTTGGATGTGTGACTGTCTGCTTTTAATCATTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482890 35 - 108792865 GCTTGGGTGGGCGAGTGTTTGCTTTGAGTCATTTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127595 35 - 7082604 GCTTGCGTGGGCGAGTGTTTGCTTTGGGTCATTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 613073 35 + 5243153 GCTTGGGCGGGCGAGTGTTTGCTTTGAGTCATTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3356611 35 + 7587287 GCTTGGGTGGGCGAGTGTTTGCTTTGAGTCATTTT i aotNan1.NW_018509326v1 I 26 C 0 s otoGar3.GL873658 2560123 35 + 5252280 GCTTGGGCAGGTGATTATTTACTTTTAACTATGTA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 593539 35 + 2232271 TCTTGAATAGACAATTATTTAGTTTTAGTTTTGTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91431886 101 - 120129022 I e canFam3.chr17 2057606 259 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=174383.000000 s hg38.chr2_KI270769v1_alt 75251 18 + 120616 AAT-ATAAGAAAGACTGCA s panTro5.chr2A 3537054 18 + 111504155 AAT-ATAAGAAAGACTGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397801 18 + 114371477 AAT-ATAAGAAAGACTGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275635 18 + 637652 AAT-ATAAGAAAGACTGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071589 18 + 81552678 AAT-ATAAGAAAGACTGCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3334382 18 + 108979918 AAT-ATGAGAAAGACTGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045522 18 - 111193037 AAT-ATGAGAAAGACTGCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438188 18 + 3644372 AAT-ATGAGAAAGACTGCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393406 18 - 10304083 AAT-ATGAGAAAGACTGCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489339 18 - 107702431 AAT-ATAAGAAAGACTGCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026309 18 + 1565135 AAT-ATGAGAAAGACTGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390935 18 - 13651311 AAT-ATAAGAAAGACTGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482925 16 - 108792865 ACT-GTAAGAA--AGTGCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127630 18 - 7082604 ACC-ATAAGAAAGAGTGCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 613108 18 + 5243153 ACT-ATAAGAAAGAGTGCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3356646 18 + 7587287 ACT-ATAAGAAAGAGTGCA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2560158 19 + 5252280 AATAATGCAAAATGGTGCA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2057865 18 + 64289059 aaa-agaaAAAAAAGGAAA i canFam3.chr17 I 259 I 1 s dasNov3.JH580157 593574 18 + 2232271 AAT-ATAAGAGATAACCCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91431886 101 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=674714.000000 s hg38.chr2_KI270769v1_alt 75269 81 + 120616 GAAAATATTCCAATTCAAATGTATGTGACCATGAAAAGGGTG-GGTTCTTTCCAG--------------------------------------------------------------------GAGTTCTGGTTTGAC-------TGTGGGAGGCCC s panTro5.chr2A 3537072 81 + 111504155 GAAAATATTCCAATTCAAATGTGTGTGACCATGAAAAGGGTG-GCTTCTTTCCAG--------------------------------------------------------------------GAGTTCTGGTTTGAC-------TGTGGGAGGCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397819 81 + 114371477 GAAAATATTCCAATTCAAATGTGTGTGACCATGAAAAGGGTG-GCTTCTTTCCAG--------------------------------------------------------------------GAGTTCTGGTTTGAC-------TGTGGGAGGCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275653 81 + 637652 GAAAATATTCCAATTCAAATGTGTGTGACCATGAAAAGGGTG-GGTTCTTTCCAG--------------------------------------------------------------------GAGTTCTGGTTTGAC-------TGTGGGAGGCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071607 81 + 81552678 GAAAATATTCCAGTTCAAATGTGTGTGACCATGAAAAGGGTG-GGTTCTTTCCAG--------------------------------------------------------------------GAGTTCTGGTTTGAC-------TGTGGGAGGCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3334400 149 + 108979918 GAAAAGATTCCAATTCCAATGTGTGTGACCATGAAAAGCGGG-GGTGCTTTCCAGGGTTCTGGCTGGACTGTGGGAGGCCCAGTTCCAATGTGTGTGACCATGAAAAGCGGGGGTGCTTTCCAGGGTTCTGGTTGGAC-------TGTGGGAGGCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045540 149 - 111193037 GAAAAGATTCCAATTCCAATGTGTGTGACCATGAAAAGCGGG-GGTGCTTTCCAGGGTTCTGGCTGGACTGTGGGAGGCCCAGTTCCAATGTGTGTGACCATGAAAAGCGGGGGTGCTTTCCAGGGTTCTGGTTGGAC-------TGTGGGAGGCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438206 149 + 3644372 GAAAAGATTCCAATTCCAATGTGTGTGACCATGAAAAGCGGG-GGTGCTTTCCAGGGTTCTGGCTGGACTGTGGGAGGCCCAGTTCCAATGTGTGTGACCATGAAAAGCGGGGGTGCTTTCCAGGGTTCTGGTTGGAC-------TGTGGGAGGCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393424 81 - 10304083 GAAAATATTCCAATTCCAGTGTGTGTGACCATGAAAAGGGGG-GGTGCTTTCCAG--------------------------------------------------------------------GGGTTCTGGTTGGAC-------TGTGGGAGGCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489357 82 - 107702431 GAAAACATTCCAATTCCAATGTGTGTGACCATGAAAAGGGGGTGGTGCTTTCCAG--------------------------------------------------------------------GGGTTCTGGTTGGAC-------TGTGGGAGGCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026327 80 + 1565135 GAAAATATTCCAATTCCAGTGTGTGTGACCATGAAAAGGGG--GGTGCTTTCCAG--------------------------------------------------------------------CGGTTCTGGTTGGAC-------TGTGGGAGGCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3390953 81 - 13651311 GAAAATATTCCAATTCCAATGTGTGTGACCATGAAAAGGGGG-GGTGCTTTCCAG--------------------------------------------------------------------GGGTTCTGGTTGGAC-------TGTGGAAGGCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3482941 81 - 108792865 GAAAATAGTCCATTTCAGATGTGTGTGACCATGAAGAGGGTT-GGCTCCTTCCAG--------------------------------------------------------------------GCACTCCGGTGTGAC-------TGTGGGAAGCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127648 81 - 7082604 GAAAACAGTCCATTTCAGATGTGTGTGACCGTGAAGAGGGCC-GGTTCCTTCCAG--------------------------------------------------------------------GCACTCCGGCGTGCC-------TGTGGGAAGCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 613126 81 + 5243153 GAAAACAGTCCATTTCAGATGTGTGTCGCCATGAAGAGGGCT-GCTTCCTTCCAG--------------------------------------------------------------------GCGCTCCGGCGTGAC-------TGTGGGAAGCTC i cebCap1.NW_016107454v1 C 0 I 47 s aotNan1.NW_018509326v1 3356664 81 + 7587287 GAAGACAGTCCATCTCAGATGTGTGTGACCATGAAGAGGGTT-GGTTCCTTCCAG--------------------------------------------------------------------GCGCTCCGGCGTGAC-------CGTGGGAAGCCC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2560177 79 + 5252280 GAAAATATTCCAGATCAAATTCATGGGCCTAAGACAAAGTCT-GGCTCGCAC--A--------------------------------------------------------------------GTGGCCTGATGTGAT-------GGTGTCAGGTCC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91431987 69 - 120129022 GGAAATAGTTCAGTTCAAATTCATGTGACCATTAGG-------TGTTCTTTGCAA--------------------------------------------------------------------TGATTCTG------C-------TGTGTGGTGTTC i mm10.chr12 I 101 I 5 s canFam3.chr17 2057884 76 + 64289059 GAAATAGTTTCACATCAAATGT------CTCTTAAA-------GGTTATTTAGGG--------------------------------------------------------------------TAATTCTGGTTTGACGGTATTGGGTATGAAGTCC i canFam3.chr17 I 1 I 1 s dasNov3.JH580157 593592 75 + 2232271 GAAAATATTCCA-----AACTTCTGTGACCTTTAAAAACTT--AGTTTTTTACAG--------------------------------------------------------------------TAATTCCCATTAGAA-------TGTATCAAGTCC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=223381.000000 s hg38.chr2_KI270769v1_alt 75350 28 + 120616 TGCTG--GCTTTTGT-----------G---CCTGTTGCTAAATG s panTro5.chr2A 3537153 28 + 111504155 TGCTG--GCTTTTGT-----------G---CCTGTTGCTAAATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397900 28 + 114371477 TGCTG--GCTTTTGT-----------G---CCTGTTGCTAAATG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275734 28 + 637652 TGCTG--GCTTTTGT-----------G---CCTGTTGCTAAATG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071688 28 + 81552678 TGCTG--GCTTTTGT-----------G---CCTGCTGCCAAATG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3334549 28 + 108979918 TACTG--GCTTTTGT-----------G---CCTGTTGCTAAAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045689 28 - 111193037 TACTG--GCTTTTGT-----------G---CCTGTTGCTAAAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438355 28 + 3644372 TACTG--GCTTTTGT-----------G---CCTGTTGCTAAAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393505 28 - 10304083 TACTG--GCTTTTGT-----------G---CCTGTTGCTAAAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489439 28 - 107702431 TACTA--GCTTTTGG-----------G---CCTGTTGCTAAAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026407 28 + 1565135 TACTG--GCTTTTGT-----------G---CCTGTTGCTAAAGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3391034 28 - 13651311 TACTG--GCTTTTGT-----------G---CCTGTTGCTAAAGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3483022 28 - 108792865 CGCTG--GCTCGTGC-----------G---CCTGTCGCTCAGTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127729 28 - 7082604 CGCCG--GCTCATGC-----------G---CCTGTCGCTCAGTG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3356745 28 + 7587287 TGCTG--GCTCGTGC-----------G---CCTGTCGCTCAGTG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2560256 27 + 5252280 ---TGGCGCCTTTGT-----------A---CGATCTGGTGCATG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91432061 28 - 120129022 TGTTG--CAGTTAGG-----------G---TCATCTGCTAACTG i mm10.chr12 I 5 I 453 s canFam3.chr17 2057961 31 + 64289059 TGATG--TGATTGGG-----------AAGCCCGACTGCTGAATG i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 593667 39 + 2232271 TGCTG--CCTTTGATATGATTATGAAG---CCAATTGCTAGATG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 613207 47 + 5243153 I a score=348050.000000 s hg38.chr2_KI270769v1_alt 75378 53 + 120616 TGAACCCACAGAAAGTGTCATCACAGCCACACTGAAATGAGTTACTCTAGACA s panTro5.chr2A 3537181 53 + 111504155 TGAACCCACAGAAAGTGTCATCGCAGCCGCACTGAAACGAGTTACTCTAGACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397928 53 + 114371477 TGAACCCACAGAAAGTGTCATCGCAGCCGCACTGAAACGAGTTACTCTAGACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275762 53 + 637652 TGAACCCACAGAAAGTGTCATCGCAGCCGCACTGAAACAAGTTACTGTAGACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071716 53 + 81552678 CGAACCCACAGAAAGTGTCATCGCAGCCGCACTGAAACGAGTTACTCTAGACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3334577 52 + 108979918 TGAACCCACAGAAAGTGT-ATCGCAGCCGCACTGAAACAAGTTACTCTAGACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045717 52 - 111193037 TGAACCCACAGAAAGTGT-ATCGCAGCCGCACTGAAACAAGTTACTCTAGACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438383 53 + 3644372 TGAACCCACAGAAAGTGTCATTGCAGCCGCACTGAAACAAGTTACTCTAGACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393533 53 - 10304083 TGAACCCACAGAAAGTGTCATCGCAGCCGCACTGAAACAAGTTACTCTAGACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489467 53 - 107702431 TGAACCCACAGAAAGTGTCATCACAGCCGCACTGAAACAAGTTACTCTAGACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026435 53 + 1565135 TGAACCCACAGAAAGTGTCATCGCAGCCGCACTGAAACAAGTTACTCTAGACG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3391062 53 - 13651311 TGAACCCACAGAAAGTGTCATCGCAGCCACACTGAAACAAGTTACTCTAGATA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3483050 32 - 108792865 TGAATCCACATCCAGTGTCCTTGCAGCCAACC--------------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127757 31 - 7082604 TGAGCCCACATCAGCTGTCCTCGCAGCTAG-C--------------------- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3356773 32 + 7587287 TGAACCCATATCAAGTGTCCTCACGGCCAACC--------------------- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2560283 53 + 5252280 TGAGTGCACAGAGATTACCATGGGAGGTGTGCCAACATGGATGACCGTGGACA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2057992 53 + 64289059 TGAATCTACATAGACCTTCATTGGTGACGCCTTGAAACATATTACCTTAGACG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 593706 37 + 2232271 TGAATTTGCATAGATTTTCAGCTGAGGCATACTGAAA---------------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 613207 47 + 5243153 I a score=716575.000000 s hg38.chr2_KI270769v1_alt 75431 72 + 120616 TTGTCCTGCTGCAGTTACGAAAGCACTGACTAAACCGTGAGGAATCTCA---------------------------------------------------GTTCAGCTTAT-------------------------CCCGTAATAGTC s panTro5.chr2A 3537234 72 + 111504155 CTGTCCTGCTGCAGTTACAAAAGCACTGACTAAACCGTGAGGAATCTCA---------------------------------------------------GTTCAGCTTAG-------------------------CCCGTAATAGTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3397981 72 + 114371477 CTGTCCTGCTGCAGTTACAAAAGCACTGACTAAACTGTGAGGAATCTCA---------------------------------------------------GTTCAGCTTAG-------------------------CCCGTAATAGTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275815 72 + 637652 CTGTCCTGCTGCAGTTACAAAAGCACTGACTAAACCGTGAGGAATCTCA---------------------------------------------------GTTCAGCTTAG-------------------------CCCGTAATAGTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071769 72 + 81552678 CTGTCCTGCTGCAGTTACAAAAGCACTGACTAAACCGTGAGGAATCTTA---------------------------------------------------GTTCAGCTTAG-------------------------CCCGTAATAGTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3334629 72 + 108979918 CTGTCCTGCCGCAGTTACAAAAGCGCTGACTGAACCGTGAGGAATCTTA---------------------------------------------------GTTCAGCTTAG-------------------------CCCATAATAGTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045769 72 - 111193037 CTGTCCTGCCGCAGTTACAAAAGCGCTGACTGAACCGTGAGGAATCTTA---------------------------------------------------GTTCAGCTTAG-------------------------CCCATAATAGTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438436 72 + 3644372 CTGTCCTGCCGCAGTTACAAAAGCGCTGACTGAACCGTGAGGAATCTTA---------------------------------------------------GTTCAGCTTAG-------------------------CCCATAATAGTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393586 72 - 10304083 CTGTCCTGCTGCAGTTACAAAAGCGCTGACTGAACCGTGAGGAATCTGA---------------------------------------------------GTTCAGCTTAG-------------------------CCCATAATAGTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489520 72 - 107702431 CTGTCCTGCTGCAGTTACAAAAGCGCTGACTGAACCTTGAGGAATCTTA---------------------------------------------------GTTCAGCTTAG-------------------------CCCATAATAGTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026488 72 + 1565135 CTGTCCTGCTGCAGTTACAAAAGCGCTGACTGAACCGTGAGGAATCTGA---------------------------------------------------GTTCAGCTTAG-------------------------CCCATAATAGTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3391115 72 - 13651311 CTGTCCTGCTGCAGTTACAAAAGCGCTGACTGAACCGTGAGGAATCTTA---------------------------------------------------GTTCAGCTTAG-------------------------CCCATAATAGTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3483082 72 - 108792865 CTGTCCCACTGCAGTCAGAATAGCAGTGACTAACCTGTGAGGAGTCTTG---------------------------------------------------GTTCAGCTCAG-------------------------ACTGTAACGGTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3127788 70 - 7082604 CTGCCCTGCTGCAGTCAGAACAGCACTGACTGAACCGTGAGGAGTCT-----------------------------------------------------GTTCAGCTCAG-------------------------CCTGGAACGGTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 613254 72 + 5243153 CTGTCCTGCTGCAGTCAGAACAGCTCTGACGAAACCGTGAGGAGTCTTA---------------------------------------------------GTTCAGTGCAG-------------------------CCTGTGACGGTC i cebCap1.NW_016107454v1 I 47 C 0 s aotNan1.NW_018509326v1 3356805 72 + 7587287 CTGTCCCGCTGCAGTCAGAACAGCACTGACTAAACCGTGAGGAGTCTTA---------------------------------------------------GTTCAGCTCAG-------------------------CCTGTAACAGTC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2560336 52 + 5252280 -TGCCCTGTTATAATTG-GAAAGTAGTGACTAGAACGTGAGGAGTTCTA---------------------------------------------------CCTCG------------------------------------------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2058045 148 + 64289059 TCATCCTGTTGCCCTCAGAAAAGTGCCGATAAAACCATAGAGAATCTTATTAGAACGTGGCTGATAgggcagcccgggtggctcagtggtttagtgccgccttcagcccagggcctcctggagacctggatcgagtcccatgtcagcc i canFam3.chr17 C 0 I 122 s dasNov3.JH580157 593743 68 + 2232271 ----CCTGTTGTCATTAGAAAATTATTGACTAAACCATAAAGAATCTTA---------------------------------------------------TTTCAACTTAG-------------------------CTGGTAATATAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=2913303.000000 s hg38.chr2_KI270769v1_alt 75503 322 + 120616 ACTCGCTGATATTTTGCCTGAAATAACCCTTGAATC-ATGTTTGCTGGACAG-ACAAAGTCCAGA-C----TGAA-CAGTGGTCTCAG-TAATGCACAAAGCTCGG-CAGGACCCCCTTTGCTAAGAATGTCCTTGAAGCTGGAATGCATTTTCCTGGAATATTTGGTGACAGGGAGGTCACAGGGAGTGATGAGTCCCGC-CCACA--------TCCCT----GTCA--------------ATCC--CACCCTTGCAGGCGGAGCACAGGGCAGCTTCTGCCCCT-------CTCACCCTCAG----TCTT---AGG----------TC---------ACGTCCCAAACCTG-GGCCAGGGAAAGGAGGCACGAGCAAGGG------ATG------GCTGAGCGGG s panTro5.chr2A 3537306 322 + 111504155 ACTCGCTGATATTTTGCCTGAAATAACCCTTGAATC-ATGTTTGCTGGACAG-ACAAAGTCCAGA-C----TGAA-CAGTGGTCTCAG-TAATGCACAAAGCTCGG-CAGGACCCCCTTTGCTAAGAATGTCCTTGAAGCTGGAATGCATTTTCCTGGAATATTTGGTGACAGGGAGGTCACAGGGAGTGATGAGTCCCGC-CCACA--------TCCCT----GTCA--------------ATCC--CACCCTTGCAGGCCGAGCACAGGGCAGCTTCTGCCCCT-------CTCACCCTCAG----TCTT---AGG----------TC---------ACGTCCCAAACCTG-GGCCAGGGAAAGGAGGCACGAGCAAGGG------ACG------GCTGAGCGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3398053 322 + 114371477 ACTCGCTGATATTTTGCCTGAAATAACCCTTGAATC-ATGTTTGCTGGACAG-ACAAAGTCCAGA-C----TGAA-CAGTGGTCTCAG-TAATGCACAAAGCTCGG-CAGGACCCCCTTTGCTAAGAATGTCCTTGAAGCTGGAATGCATTTTCCTGGAATATTTGGTGACAGGGAGGTCACAGGGAGTGATGAGTCCCGC-CCACA--------TCCCT----GTCA--------------ATCC--CACCCTTGCAGGCCGAGCACAGGGCAGCTTCTGCCCCT-------CTCACCCTCAG----TCTT---AGG----------TC---------ACGTCCCAAACCTG-GGCCAGGGAAAGGAGGCACGAGCAAGGG------ACG------GCTGAGCGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 275887 321 + 637652 ACTCGCTGATATTTTGGCTGAAATAACCCTTGAATC-ATGTTTGCTGGACAG-ACAAAGTCCAGA-C----TGAA-CAGTGGTCTCAG-TAATGCACAAAGCTCGG-CAGGACCCCCTTTGCTAAGAATGTCCTTGAAGCTGGAATGCATTTTCCTGGAATATTTGGTGACAGGGAGGTCACAGGGAGTGATGAGTCCCGC-CCACA--------TCCCT----GTCA--------------ATCC--CACCCTTGCAGGCCGAGCACAGGGCAGCTTCTGCCCC--------CTCACCCTCAG----TCTT---AGG----------TC---------ACGTCCCAAACCTG-GGCCAGGGAAAGGAGGCACGAGCAAGGG------ACG------GGTGAGGGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3071841 322 + 81552678 ACTCACTGATACTTTGCCTGAAATAACCCTTGAATC-ATGTTTGCTGGACAC-ACAAAGTCTAGA-C----TGAA-CAGTGGTCTCAG-TAATGCACAAAGCTCGG-CAGGACCCCCTTTGCTAAGAATGTCCTTGAAGCTGGAATGCATTTTCCTGGAATATTTGGTGACAGGGAGGTCACGGGGAGTGATGAGTCCCAC-CCACA--------TCCGT----GTCA--------------ATCC--CACCCTTGCAGGCTGAGCACAGGGCAGCTTCCGCCCCT-------CTCACCCTCAG----TCTT---AGG----------TC---------ACATCCCAAACCTG-GGCCAGGGAAAGGCGGCACGAGCAAGGG------ACG------GCTGAGGGGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3334701 323 + 108979918 ACTTGCTGATATTTTGCCTGAAG-AACCCTTGAATC-ATGTTTGCTGG-----ACAAAGTCCAGA-C----TGAA-CGGTGGTCTCAA-TAATGCACAAAGCTGGGACAGGACCCCCTTTGCTAAGAATGTCCTTGAAGCTGGAATGCATTTTCCTGGGATATTTGGTGACAGGGAGGTCACGGGGAGAGATGAGTGCCGC-CCACA--------TCCCT----GTCA--------------ATCTTTCACCCTTGCAGGCTGAGCACAGGGCAGCTTCCGCCCCG-------TCCACCCTCAG----TCTTCTGAGG----------TC---------ACGTCCCAAACCTG-GGCCAGGGAAAGGAGTCACAAGCAAGGG------ACC------GCTAAGGGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5045841 323 - 111193037 ACTTGCTGATATTTTGCCTGAAG-AACCCTTGAATC-ATGTTTGCTGG-----ACAAAGTCCAGA-C----TGAA-CGGTGGTCTCAA-TAATGCACAAAGCTGGGACAGGACCCCCTTTGCTAAGAATGTCCTTGAAGCTGGAATGCATTTTCCTGGGATATTTGGTGACAGGGAGGTCACGGGGAGAGATGAGTGCCGC-CCACA--------TCCCT----GTCA--------------ATCTTTCACCCTTGCAGGCTGAGCACAGGGCAGCTTCCGCCCCG-------TCCACCCTCAG----TCTTCTGAGG----------TC---------ACGTCCCAAACCTG-GGCCAGGGAAAGGAGTCACAAGCAAGGG------ACC------GCTAAGGGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438508 322 + 3644372 ACTTGCTGATATTTTGCCTGAAG-AACCCTTGAATC-ATGTTTGCTGG-----ACAAAGTCCAGA-C----TGAA-CGGTGGTCTCAA-TAATGCACAAAGCTGGGACAGGACCCCCTTTGCTAAGAATGTCCTTGAAGCTGGAATGCATTTTCCTGGGATATTTGGTGACAGGGAGGTCACGGGGAGAGATGAGTGCCGC-CCACA--------TCCCT----GTCA--------------ATCTTTCACCCTTGCAGGCTGAGCACAGGGCAGCTTCCGCCCCG-------TCCACCCTCA-----TCTTCTGAGG----------TC---------ACGTCCCAAACCTG-GGCCAGGGAAAGGAGTCACAAGCAAGGG------ACC------GCTAAGGGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393658 323 - 10304083 ACTTGCTGATATTTTGCCTGAAG-AACCCTTGAATC-ATGTTCGCTGG-----ACAAAGTCCAGA-C----TGAA-CAGTGGTCTCAA-TAATGCACAAAGCTGGGACAGGACCCCCTTTGCTAAGAATGTCGTTGAAGCTGGAATGCATTTTCCTGGGATATTTGGTGACAGGGAGGTCACGGGGAGAGATGAGTGCCGC-CCACA--------TCCCT----GTCA--------------ATCTTTCACCCTTGCAGGCTGAGCACAGGGCAGCTTCCGCCCCG-------TCCACCCTCAG----TCTTCTGAGG----------TC---------ACGTCCCAAACCTG-GGCCAGGGAAAGGAGTCACAAGCAAGGG------ACC------GCTAAGGGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489592 319 - 107702431 ACTTGCTGATATTTTGCCTGAAG-AACCCTTGAATC-ATGTTTGCTGG-----ACAAAGTCCAGA-C----TGAA-CAGTGGTCTCAA-TAATGCACAAAGCTGGGACAGGACCCCCTTTGCTAAGAATGTCCTTGAAGCTGAAATGCGTTTTCCT--AATCTTTGGTGACAGGGAGGTCACGGGGAGAGATGA--GCCGC-CCACA--------TCCCT----GTCA--------------ATCCTTCACCGTTGCAGGCTGAGCACAAGGCAGCTTCTGCCCCT-------TCCACCCTCAA----TCTTCTGAGG----------TC---------ACGTCCCAAACCTG-GGCCAGGGAAAGGAGTCACAAGCAAGGG------ACC------GCTAAGTGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026560 323 + 1565135 ACTTGCTGATATTTTGCCTGAAG-AACCCTTGAATC-ATGTTTGCTGG-----ACAAAGTCCAGA-C----TGAA-CAGTGGTCTCAA-TAATGCACAAAGCTGGGACAGGACCCCCTTTGCTAAGAATGTCCTTGAAGCTGGAATGCATTTTCCTGGGATATTTGGTGACAGGGAGGTCACGGGGAGAGATGAGTGCCGC-CCACA--------TCCCT----GTCA--------------ATCTTTCACCCTTGCAGGCTGAGCACAGGGCAGCTTCCGCCCCG-------TCCACCCTCAG----TCTTCTGAGG----------TC---------ACGTCCCAAACCTG-GGCCAGGGAAAGGAGTCACAAGCAAGGG------ACC------GCTAAGGGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3391187 323 - 13651311 ACTTGCTGATATTTTTCCTGAAG-AACCCTTGAATC-ATGTTTGCTGG-----ACAAAGTCCAGA-C----TGAA-CAGTGGTCTCAA-TAATGCACAAAGCTGGGACAGGACCGCCTTTGCTAAGAATGTCCTTGAAGCTGGAATGCATTTTCCTGGGATATTTGGTGACAGGGAGGTCACGGGGAGAGATGAGTCCCGC-CCACA--------TCCCT----GTCA--------------ATCCTTCACCCTTGCAGGCTGAGCACAGGGCAGCTTCTGCCGCT-------TCCATTCTGAG----TCTTCTGAGG----------TC---------ACGTCCCAAACCTG-GGCCCGGGAAAGGAGTCACAAGCAAGGG------ACC------ACTAAGGGGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3483154 312 - 108792865 ACT--CTGACACTTTGCCTGAAAGAGCCCTTGGATC-GT-GTTGCTGGACAGAGGCAAGTCCAAA-CCTCATGAA-CAGCGGTCTCAG-GGAGGCACAAAGCTGGGACAGGACGCCCTTTGCTGAGAATGGCCTTGCAGCTGGAATGCCTTCTCCTGGAACATTTGGTGACAGCAAGGTCACGGGGAGCATTGAGTCCCAC-CCTC---------TGTCC----ATCA--------------GTTC--CACGCTTGCA-ACCGAGCACAGGGCAGCTTCCGCCCC---------TCACTCTCGG----TCTTCTGAGG----------TC---------ACGGCCCAAATCTG-GGCCAGGGAAAAGAGGCAC--------G------ACG------GCTGAG---- i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3127858 325 - 7082604 ACTCGCTGATACTTTGCCTGAAAGAGCCCTTGGATC-ATGGTTGCTGGACAGAGGAAAGTCCAGA-CTTCATGAA-CAGTGGTCTCAG-CGAGGCAC-AAGCTGGGACAGGACGCCCTTTGCTAAGAATGGCCTTGAAGCTGGAATGCCTTGTCCTGGAATATTTGGTGACAGGAAGGTCAC-GGGAGCATTGAGTCCCGC-CCTC---------TCTCA----GTCC--------------GTCC--CGCGCTTGCA-GCCGACTACAGGGCAGCTTCTGCCCC---------TCACTCTCGG----TCTTCTGAGG----------TC---------ACGTCCCAAATCTG-GGCCAGGGGAAAGAGGCACGACCGAGGG------ACG------GCTGAGGGGG i saiBol1.JH378218 C 0 I 45 s cebCap1.NW_016107454v1 613326 325 + 5243153 ACCCGCTGATACTTTGCCTGGAAGAGGCCTCGGATC-ATGTTTGCTGGACAGAGGAAAGTCCAGA-CTTCGTGAA-CAGTGGTCTCAG-TGAGGCAC-AACCTGGGATAGGACGCCCTTTGCTAAGAATGGCCTTGAAGCTGGAATGCCTTGTCCTGGAATATTTGGCGACAGGAAGGTCACGGGGAGCGTTGAGTCCTGC-CCTC---------TCTCC----GTCA--------------GTCC--CA-GCTTGCA-GCCGAGCACAGGGCAGCTTCCGCCCC---------TTGCTCTCGG----TCTTCTGAGG----------TC---------ACGTCCCAAATCTG-GGCCAGGGGAAAGAGGCACGAGCGAGGG------ACA------GCTGAGGGGG i cebCap1.NW_016107454v1 C 0 I 606 s aotNan1.NW_018509326v1 3356877 327 + 7587287 ACTCACTGATACTTTGCCTGAAAGAGCCCTTGGATC-GTGTTTGCTGGACAGAGGAAAGTCCAGA-CTTCATGAA-CAGTGGTCTCAG-TGAGGCACAAAGCTGGGACAGGACACCCTTTGCTAAGAATGGCCTTGAAGCTGGAATGCCTTGTCCTGGAATATTTGGTGACAGGAAGGTCACGGGGAGCGTTGAGCCCCGC-CCTC---------TCTCC----GTCA--------------GTCC--CACGCTTGCA-GCCGAGCACAGGGCAGCTTCCGCCCC---------TCACTCTCAG----TCTTCTGAGG----------TC---------ACGTCCCAGATCTG-GGCCAGGGGAAAGAGGCACGAGCAAGGG------ACG------GCTGAGGGGG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2560388 235 + 5252280 --CTGATAATACTGTACTGGAAAGAGCCCCTGAGCT-GTGTGTACGGGGCTG-AGGGAAGTCAGG-C----TGCA-AAGTGGCCTCGG-CGATGCAGAAAGCCGGGATGGGGCCCTCTTGGC-----------------------------------------------------------CCAGGAGTGGTGAGTCCCTA-CCTCA--------CCTCT----GTCA--------------GCCC--CACCCTTGCAGGCCCGGCACAAAGCAAGCCCCACCC----------TTCCCTCCAG----TTGT----------------------------------------------AGGGAAGGCAGGAGTGAG-ACGGG------GCA------GCTGAGCGGG i otoGar3.GL873658 C 0 I 2 s canFam3.chr17 2058315 323 + 64289059 ACTGGCTGATACTTTGCTGGAAAGAGCGCGTGAAGCTGCGTAGACTGCACAG-AGGATGTCCAGC-T----CGAAGCAGTGGCCCCAG-CACTGC----AGCAGGG-GAGGGC--------------ACGTCGCTGAAGCCAGGATGTGCCCTCCTGGACTGGCGGGTGGTA-------------GAGGCATGAGCGCCCCTCCTCACCTGGGTCTCCCTGGACGGCG--------------ACCC--CGCCTTCACA--CTGAGC-CTCGGCGGCCTCTGCTCCC-----CACACACCATCAG----TCTGTTAGGG----------TTTCTGCCATAATGTCCCAGAGCCG-GGCTTGGGGAAAGGGCGGTGAGCAACAG------GCACTCCCTGATGGTCAGG i canFam3.chr17 I 122 C 0 s dasNov3.JH580157 593811 354 + 2232271 -AACACTGATATTTTTATTGAAAGAGCACTTGAATCCATGTGTCCTAGCTAAAGGAAAATCCACATC----TAAG-CAGTGTTCTGAGTTAACTCAGAAAGCTAAGAC-----------CATTAAGGAAG---TTGAAGCTAGAATATATTTTCCTGGAACATATGATGACAGGGAGGTCTTCAGGTATCAGGAGTCCCATTCCTCA--------TTTCT----CTCAATCACAAAGCCTTGATCC--CACTCTTGCAGACTTAGGATATGATACCTTCTGTCCCAGCTCTCATCCTCCTCCAGCGCCTCTTCTAAGGGTTTCTAACTTG---------ACATCCCAAAACTGAAGATGGGGAAAAGAAGAGTGAACAGCAGTTCATCACA------ATCAGG---- i dasNov3.JH580157 C 0 I 3 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=67712.000000 s hg38.chr2_KI270769v1_alt 75825 7 + 120616 GAGAAGC s panTro5.chr2A 3537628 7 + 111504155 GAGAAGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3398375 7 + 114371477 GAGAAGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 276208 7 + 637652 GAGAAGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3072163 7 + 81552678 GAGAAGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3335024 7 + 108979918 GAGAAGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5046164 7 - 111193037 GAGAAGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438830 7 + 3644372 GAGAAGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393981 7 - 10304083 GAGAAGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489911 7 - 107702431 GAGAAGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026883 7 + 1565135 GAGAAGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3391510 7 - 13651311 GAGAAGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3483467 7 - 108792865 GGGGAAC i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3128228 7 - 7082604 GGGGAGC i saiBol1.JH378218 I 45 C 0 s aotNan1.NW_018509326v1 3357204 4 + 7587287 ---GAGC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2560625 7 + 5252280 GGGAAGG i otoGar3.GL873658 I 2 I 1 s canFam3.chr17 2058638 7 + 64289059 GAAAGGC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 594168 7 + 2232271 AAAAAAT i dasNov3.JH580157 I 3 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 613651 606 + 5243153 I a score=1078203.000000 s hg38.chr2_KI270769v1_alt 75832 109 + 120616 AGCACAGACCTTCCACAGGCACCCACT----------------------------------------------CACGGTGAGCCAGGCCCTGCGCT-GAGCATTTCA--CCTCACGGTGTGACTGGcttgttttacagatcagcaaactgaggtctcc s panTro5.chr2A 3537635 109 + 111504155 AGCACAGACCTTCCACAGGCACCCACT----------------------------------------------CACGGTGAGCCAGGCCCTGCGCT-GAGCATTTCA--CCTCACAGTGTGACTGGCTTGttttacagatcagcaaactgaggtctcc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3398382 109 + 114371477 AGCACAGACCTTCCACAGGCACCCACT----------------------------------------------CACGGTGAGCCAGGCCCTGCGCT-GAGCATTTCA--CCTCACAGTGTGACTGGCTTGttttacagatcagcaaactgaggtctcc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 276215 109 + 637652 AGCACAGACCTTCCACAGGCACCCACT----------------------------------------------CACCGTGAGCCAGGCCCTGCGCT-GAGCATTTCA--CCTCACGGTGTGACTGGCTTGttttacagatcagcaaactgaggtctcc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3072170 109 + 81552678 AGCACAGACCTTTCACAGGCACCCACT----------------------------------------------CACCGTGAGCCAGGCCCTGCGTT-GAGCATTTCA--CCTCACGGTGTGACTGGCTTGttttacagagcagcgaactgaggtctcc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3335031 109 + 108979918 AGCACAGACCTTCCACAGGCACCcact----------------------------------------------caccgtgagccaggccccgtgct-gagcgtttca--cctcacggtgtgactagcttgttttacagatcaacaaactgaggtctcc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5046171 109 - 111193037 AGCACAGACCTTCCACAGGCACCCACT----------------------------------------------CACCGTGAGCCAGGCCCCGTGCT-GAGCGTTTCA--CCTCACggtgtgactagcttgttttacagatcaacaaactgaggtctcc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438837 109 + 3644372 AGCACAGACCTTCCACAGGCACCCACT----------------------------------------------CACCGTGAGCCAGGCCTCGTGCT-GAGCGTTTCA--CCTCACGGTGTGACTAGCTTGttttacagatcaacaaactgaggtctcc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3393988 109 - 10304083 AGCACAGACCTTCCACAGGCACCCACT----------------------------------------------CACCGTGAGCTAGGCCCCTTGCT-GAGCATTTCA--CCTCACggtgtgactagcttgttttacagatcagcaaactgaggtctcc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3489918 109 - 107702431 AGCACAGACCTTCCACAGGCACCcact----------------------------------------------caccgtgagccaggctctgtgct-gagcatttca--cctcacggtgtgactagcttgttttacagatcagcaaactgaggtctcc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026890 109 + 1565135 AGCACAGACCTTCCACAGGCACCCACT----------------------------------------------CACCGTGAGCGAGGCCCCGTGCT-GAGCATTTCA--CCTCACggtgtgactagcttgttttacagatcaacaaactgaggtctcc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3391517 109 - 13651311 AGCTCAGACCTTCCACAGGCACCcact----------------------------------------------caccgtgagccaggccctgtgct-gagcatttca--cctcacagtgtgactagcttgttttacagatcagcaaactgaggtctcc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3483474 108 - 108792865 AGCACAGACCTTCCACAGGCACCCACG----------------------------------------------GACCATGAGCCAGGCCCTGCGCT-GAGCATTTAA--CCTAACGGTGGGATTGGcctgttttacacagcagcaaactgaggtc-cc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3128235 153 - 7082604 AGCACAGACCTTCCACAGGCACCCACGCGAGGGACGGCTGAGGGGGAGCACAGACCTTCCACAGGCACCCACACACCATGAGCCAGGCCCTGCGCT-GAGCATTTAA--CCC-ACGGTGGGACCGGCCTGTTTTACACAGCAGCCAACTGAGGTC-CC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 614257 107 + 5243153 AGCACAGACCTTCCACAGGCACCCACG----------------------------------------------CACCGTGAGCCAGGCCCTGCGTT-GAGCATTTAA--CCC-ACAGTGGGTCTGGcctgttttacacagcagcaaactgaggtc-cc i cebCap1.NW_016107454v1 I 606 C 0 s aotNan1.NW_018509326v1 3357208 108 + 7587287 AGCACAGACCTTCCACAGGCACCCACG----------------------------------------------CACCGTAAGCCAGGCCCTGCGCT-GAGCATTTAA--CCTCACGGTGGGACTGGcctgttttacacagcagcgaactgaggtc-cc i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2560633 67 + 5252280 AGTACAGG---------------CAAG----------------------------------------------TGCTGTGAGTT-----------------GCTTCA--CCCCCCAGG----------TACTGCACAGGCCAGCAAACT-CGGTCTCC i otoGar3.GL873658 I 1 I 132 s canFam3.chr17 2058645 102 + 64289059 ----CAGA-CGTCTGCGGAGCACCACT----------------------------------------------CACCCTGAGC-GGGCGCCGTGCTAGACCATTCCA--CCACG-GGCGCCCCCTGCC-ACTTCACATGTTAGCAGGCTAAGGCTTCC i canFam3.chr17 C 0 I 3 s dasNov3.JH580157 594175 105 + 2232271 GGcatacac------tgaacactcact----------------------------------------------tgtcatgcagcaggcgctgtgct-cagccctttaatcttaggggtcttattagcctgtcttacccagaagcaaactgaggcttcc i dasNov3.JH580157 C 0 I 3 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=776813.000000 s hg38.chr2_KI270769v1_alt 75941 81 + 120616 tggttaag---------tg--atatccagctacag-------------gaggccacatagataatggggaagctagaatttgaacagggcctctgtgaactcagg s panTro5.chr2A 3537744 81 + 111504155 tggttaag---------tg--agatccagctacag-------------gaggccacatagataatggggaagctagaatttgaacagggcctctgtgaactcagg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3398491 81 + 114371477 tggttaag---------tg--agatccagctacag-------------gaggccacatagataatggggaagctagaatttgaacagggcctctgtgaactcagg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 276324 80 + 637652 tggttaag---------tg--agatccagctacag-------------gaggccacatagataatgggggagctagaatttgaacagggcctctgtgaactca-g i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3072279 81 + 81552678 cggttaag---------tg--agatccagctacag-------------gaggccacatagataatgggggagctagaatttgaacagggcctctgtgaactcagg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3335140 83 + 108979918 tgatgaag---------tgaaaaatccagtgacag-------------gaggccacatagataacgggggagctagaatttgaacagggcctctgtgaacgcagg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5046280 81 - 111193037 tgatgaag---------tg--aaatccagtgacag-------------gaggccacatagataacgggggagctagaatttgaacagggcctctgtgaacgcagg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3438946 81 + 3644372 tgatgaag---------tg--aaatccagtgacag-------------gaggccacatagataacgggggagctagaatttgaacagggcctctgtgaacgcagg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3394097 81 - 10304083 tgatgaag---------tg--aaatccagtgacag-------------gaggccacatagataacgggggagctagaatttgaacagggcctctgtgaacgcagg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3490027 79 - 107702431 tgataaag---------tg--aaatccagcgacag-------------gaggccacataggtaacgggggagctagaatttgaacagggcctctgt--actcagg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1026999 81 + 1565135 tgatgaag---------tg--aaatccagtgacag-------------gaggccacatagataacgggggagctagaatttgaacggggcctctgtgaacgcagg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3391626 81 - 13651311 tgataaag---------tg--agatccagcgacag-------------gaggccacatagataacgggggagctagaatttgaacagggcctctgtgaactcaga i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3483582 81 - 108792865 cggttcag---------tg--agatccagctacag-------------gaggccacgtagataatgggggtgccagaatttgaagagggcctctgtgaactcagg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3128388 81 - 7082604 CGGTTCAG---------TG--AGATCCAGCTACAG-------------GAGGCCACGTAGATCACAGGGGAGCCAGAATTCGAAGAGGGCCTCTGCGAACTCAGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 614364 81 + 5243153 tgattcag---------tg--agatccggctacag-------------gaggccacgtagataatgggggagccagaatttgaagagggcctctgcgaactcagg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3357316 81 + 7587287 cagttcag---------tg--agatccagctacag-------------gaggccacgtagacaatgggggagccggaatttaaagagggcctctgcgaactcagg i aotNan1.NW_018509326v1 C 0 C 0 s canFam3.chr17 2058750 68 + 64289059 TGGGTGGG---------TG--AGGTGAGCCCTCCC-------------GAGGCCCGAGAGGTGAGGAAG-------------AACAAGGGCCCCCTGAGCCCAGA i canFam3.chr17 I 3 C 0 s dasNov3.JH580157 594283 97 + 2232271 tggtcaaggaacctgcccg--agatc---tcacagataatGCCCGCCTGAAGTCGCATAGATACCGGTGGAGC-AGAAGCTGACTA--GTCTCTCTGGTCCCAGG i dasNov3.JH580157 I 3 I 3454 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e otoGar3.GL873658 2560700 132 + 5252280 I a score=721782.000000 s hg38.chr2_KI270769v1_alt 76022 89 + 120616 gcctgca--ctctcagctaacagcTGGTCCTCTCC--CCCTCCACACAGTTGCTCA--CACATGCAC-----------TGACACACGTAGGCACACGTGCACACAC s panTro5.chr2A 3537825 89 + 111504155 gcctgca--ctctCAGCTAACAGCTGGTCCTCTCC--TCCTCCACACAGTTGCTCA--CACATGCAC-----------TGACACAGGTAGGCACACGTGCACACAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3398572 89 + 114371477 gcctgca--ctctCAGCTAACAGCTGGTCCTCTCC--TCCTCCACACAGTTGCTCA--CACATGCAC-----------TGACACAGGTAGGCACACGTGCACACAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 276404 89 + 637652 gcctgca--ctctCAGCTAACAGCTGGTCCTCTCC--TCCCCCACACAGTTGCTCA--CACATGCGC-----------TGACACACATAGGCACACGTGCACACAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3072360 88 + 81552678 gcctgca--ctctCAGCTAACAGCTGGTCCTCTCC--TCC-CCACACAGTTGCTCA--CACATGCAC-----------TGACACACGTAGGCACGCGTGCACACAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3335223 91 + 108979918 gcctgcgctctctccgctaacagctggtcctctCC--TCCCCCACACAGTTGCTCA--CACATGCAC-----------TAACACACGTAGGAACATGTGCGCACAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5046361 91 - 111193037 gcctgcgctctctccgctaacagctggtcctctCC--TCCCCCACACAGTTGCTCA--CACATGCAC-----------TAACACACGTAGGAACATGTGCGCACAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3439027 91 + 3644372 gcctgcgctctctccgctaacagctggtcctctCC--TCCCCCACACAGTTGCTCA--CACATGCAC-----------TAACACACGTAGGAGCATGTGCACACAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3394178 91 - 10304083 gcctgcactctctcagctaacagctggtcctctCC--TCCCCCACACAGTTGCTCA--CACATGCAC-----------TAACACACATAGGAACATGTGCACACAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3490106 88 - 107702431 gcctgcactctctcagctaacagctggtcctctCC--TCCCCAACACGGTTGCTCA--CACACGCAC-----------TAACACATGTAGGAACATGTGCACA--- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1027080 91 + 1565135 gcctgcgctctctcagctaacagctggtcctctCC--TCCCCCACACAGTTGCTCA--CACATGCAC-----------TAACACACGTAGGAACATGTGCACACAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3391707 88 - 13651311 gcctgcactctctcagctaacagctggtcctctCC--TCCCCCACACAGTTGCTCA--CACACGCAC-----------TCACACACGTAGGAACGTGCACACA--- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3483663 91 - 108792865 gactgca--gtctcaatgaaccactggtcctctCCTGTCCCCCACCCAGTGGCTCA--CACATGCAC-----------TGACACTCATCTGCACACATGCACACAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3128469 88 - 7082604 GTCTGCG--CTCTCCACGAGCCACTGGTCCTCTTCTCTCCCCAACCCCGTGGCTCA--CACAGGCAC-----------TGACACTCATCTGCACACATGCACA--- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 614445 91 + 5243153 gtccgca--ccctcaacgaaccactggtcctctCCTCTCCCCCACCCAGTGGCTCA--CACAGGCAC-----------TGACACTCATCTGTACACATGCGCACAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3357397 90 + 7587287 gtccaca--ctctcaacga-cCGCTGGTCATCTCCTCTCCCCCACCCAGTGGCTCA--CACATGCAC-----------TGACACTAATCTGCACACATGCACACAC i aotNan1.NW_018509326v1 C 0 C 0 s canFam3.chr17 2058818 95 + 64289059 GCTCGGG--TTCTCA-CGGAAGGGTGGTCCTGTCC--TCATGCACCCCCGGGTCCATGCACATGCACACCGTCCTCCTCCACACAC------ACACATGCACACAC i canFam3.chr17 C 0 I 1036 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e otoGar3.GL873658 2560700 132 + 5252280 I a score=790451.000000 s hg38.chr2_KI270769v1_alt 76111 81 + 120616 CATCTCCTGCACGCCGCCTGCTTGTGGAAGTCCACATGGGACACCAGATAGTGTTGGAGGACAGCCCTGTCCATGGGCCCC s panTro5.chr2A 3537914 81 + 111504155 CATCTCCTGCACGCCGCCTGCTTGTGGAAGTCCACATGGGACACCAGATAGTGTTGGAGGACAGCCCTGTCCATGGGCCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3398661 81 + 114371477 CATCTCCTGCACGCCGCCTGCTTGTGGAAGTCCACATGGGACACCAGATAGTGTTGGAGGACAGCCCTGTCCATGGGCCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 276493 81 + 637652 CATCTCCTGCACGCCGCCTGCTTGTGGAAGTCCACATGGGACACCAGATAGTGTTGGAGGACAGCCCTGTCCATGGGCCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3072448 80 + 81552678 CATCTCCCGCACGCCGCCTGCTTGTGGAGGTCCACACGGGACACCAGATAGTGTT-GAGGACAGCCCTGTCCATGGGCCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3335314 81 + 108979918 CATCTCCTGCACGCTGCCTGCTTGTGGAAATCCACACGGGACACCAGATAGTGTTGGAGGACAGCCCTGTCCATGGGCCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5046452 81 - 111193037 CATCTCCTGCACGCTGCCTGCTTGTGGAAATCCACACGGGACACCAGATAGTGTTGGAGGACAGCCCTGTCCATGGGCCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3439118 81 + 3644372 CATCTCCTGCACGCTGCCTGCTTGTGGAAATCCACACGGGACACCAGATAGTGTTGGAGGGCAGCCCTGTCCATGGGCCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3394269 81 - 10304083 CATCTCCTGCACGCTGCCTGCTTGTGGAAATCCACACGGGACACCAGATAGTGTTGGAGGACAGCCCTGTCCATGGGCCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3490194 81 - 107702431 CATCTCCTGCACGCTGCCTGCTTGTGGAAATCCACACGGGACACCAGATAGTGTTGGAGGACAGCCCTGTCCATGGGCCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1027171 81 + 1565135 CATCTCCTGCACGCTGCCTGCTTGTGGAAATCCACACGGGACACCAGATAGTGTTGGAGGACAGCCCTGTCCATGGGCCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3391795 76 - 13651311 -----TCTCCACGCTGCCTGCTTGTGGAAATCTACACGGGACACCAGATAGTGTTGGAGGACAGCCCTGTCCATGGGCCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3483754 81 - 108792865 CGTCTCCTGCACGCTGCCTGCTTGTGGAATCCCTCACGGGACAGAGGATGGTGTTAGAGGTCAGCCCTTCTCATGGACCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3128557 81 - 7082604 CGTCTCCTGCACACTGCCTGCTTGTGGAAGCCCTTGCGGGACACAGGATGGTGTTCGAGGACAGCCCTTCCCAGGGGCCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 614536 81 + 5243153 TGTCTCCTGCACGCTGCCTGCTTGTGGAAGCCCTCACGGGACACAGGGTGGTGTTAGAGGACAGCCCTTCCCGTGGGCCCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3357487 81 + 7587287 CATCTCCTGCATGCTGCCTGCTTGTGGAAGCCCTCACGGGACACAGGATGGTGTTAGAGGACAGCCCTTCCCGTGGGCCCC i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2058913 1036 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e otoGar3.GL873658 2560700 132 + 5252280 I a score=1674286.000000 s hg38.chr2_KI270769v1_alt 76192 197 + 120616 TGTGGTGGGGCACAGCAGATGACTGTCACTGAATAACCCCAGGCAGGCACAGATGCGTGACGCGTGAGCTGCCACCATGGGCATCGGCTCCT-GCCTGCACTGGGATGCTTGCAGCAACCCTCGTTACCTGTGTGAGAAAGCTCTGTGTGGCCAGGATCTCC--------AGGCTGCCTCATGTGTAACA----TTATCCCCTGGTTATC s panTro5.chr2A 3537995 205 + 111504155 TGTGGTGGGGCACAGCAGATGACTGTCACTGAATAACCCGGGGCAGGCACAGATGCGTGACGCGTAAGCTGCCACCATGGGCATCGGCTCCT-GCCTGCACTGGGATGCTTGCAGCAACCCTCGTTGCCTGTGTGAGAAAGCTTCATGTGGCCAGGATCTCCGTGTGGCCAGGGTGTCTCATGTGTAACA----TTATCCCCTGGTTATC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3398742 205 + 114371477 TGTGGTGGGGCACAGCAGATGACTGTCACTGAATAACCCGGGGCAGGCACAGATGCGTGACGCGTAAGCTGCCACCATGGGCATCGGCTCCT-GCCTGCACTGGGATGCTTGCAGCAACCCTCGTTGCCTGTGTGAGAAAGCTTCATGTGGCCAGGATCTCCGTGTGGCCAGGGTGTCTCATGTGTAACA----TTATCCCCTGGTTATC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 276574 197 + 637652 TGTGGTGGGGCACAGCAGATGACTGTCACTGAATAACCCGGGGCAGGCACAGATGCGCGACGCGTGAGCTGCCACCATGGGCATCGGCTCCT-GCCTGCACTGGGATGCTTGCAGCAACCCTCGTTGCCTGTGTGAGAAAGCTCCGTGTGGCCAGGATCTCC--------AGGGTGTCTCGTGTGTAACG----TTATCCCCTGGTTATC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3072528 197 + 81552678 TGTGGTGGGGCACAGCAGATGACTGTCACTGAATAACCCGGGGCAGGCACAGATGAGTGACGCATGAGCTGCCACCATGGGCATCGGCTCCT-GCCTGCGCTGGGATGCTCGCGGCAACCCTCGTCGCCTGTGTGAGAAAGTTCCATGTGGCCAGGACCTCC--------AGGGTGCCTCATGCGTAACA----TCCCCCCCTGGTTATC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3335395 196 + 108979918 TGTGGTGGGGCACAGCAGATGACTGTCACTGAATAATCCAGAGCAGGCACAGATGCGTGGCGCGTGAGCTGCCACCATGGGCATCGGCTCCT-GCCTGCGCTGGGATGCTTGCAGCAACCCTCGTCGCCGGTGTGAGAAAGCTCCATGTGGCCGGGATCTCC--------AGGGTG-CTGACGTGTATCA----TTATCCCCTGGTTATC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5046533 196 - 111193037 TGTGGTGGGGCACAGCAGATGACTGTCACTGAATAATCCAGAGCAGGCACAGATGCGTGGCGCGTGAGCTGCCACCATGGGCATCGGCTCCT-GCCTGCGCTGGGATGCTTGCAGCAACCCTCGTCGCCGGTGTGAGAAAGCTCCATGTGGCCGGGATCTCC--------AGGGTG-CTGACGTGTATCA----TTATCCCCTGGTTATC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3439199 196 + 3644372 TGTGGTGGGGCACAGCAGATGACTGTCACTGAATAATCCAGAGCAGGCACAGATGCGTGGCGCGTGAGCTGCCACCATGGGCATCGGCTCCT-GCCTGTGCTGGGATGCTTGCAGCAACCCTCGTCGCCGCTGTGAGAAAGCTCCATGTGGCCGGAATCTCC--------AGGGTG-CTGACGTGTATCA----TTATCCCCTGGTTATC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3394350 197 - 10304083 TGTGGTGGGGCACAGCAGATGACCATCACTGAATAATCCAGAGCAGGCACAGATGCGTGACGCGTGAGCTGCCACCATGGGCATCGGCTCCT-GCCTGCGCTGGGATGCTTGCAGCAACCCTCGTCGCCTGTGTGAGAAAGCTCCATGTGGCCGGGATCTCC--------AGGGTGCCTGACGTGTATCA----TTATCCCCTGGTTATC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3490275 197 - 107702431 TGTGGTGGGGCACAGCAGATGACTGTCACTGAATAATCCAGAGCAGGCACAGATGCGTGACGCGTGAGCTGCCACCATGGGCATCGGCTCCT-GCCTGCGCTGGGATGCTTGCAGCAACCCTCGTCGCCTGTGTGAGAAAGCTCCATGTGGCCGGGATCTCC--------AGGGTGCCTGACGTGTATCA----TTATCCCCCGGTTATC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1027252 197 + 1565135 TGTGGTGGGGCACAGCAGATGACTGTCACTGAATAATCCAGAGCAGGCACAGATGCGTGACGCGTGAGCTGCCACCATGCGCATCGGCTCCT-GCGTGCGCTGGGATGCTTGCAGCAACCCTCGTCGCCTGTGTGAGAAAGCTCCATGTGGCCGGGATCTCC--------AGGGTGCCTGACGTGTATCA----TTATCCCCTGGTTATC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3391871 195 - 13651311 TGTGGT-GGGCACAGCAGATGACTGTCACTGAATAATCCAGAGCAGGCACAGATGCGTGACGCGCAAGCTGCCACCATGGGCATCGGCTCCT-GCCTGC-CTGGGATGCTTGCAGCAACCCTCGTCGCCTGTGTGAGAAAGCTCTGTGTGGCTGGGATCTCC--------AGGGTGCCTGACGTGTATCA----TTATCCCCTGGTTATC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3483835 188 - 108792865 TTGCATGGGGCACAGCCGATGACTGTCACTGAATAACCCAGGGCAGGCACAAATGCATGACATGTGAGCTTCC-CTGTGACCATCAGCTCCT-GCCCACCCTGGGATGCCTGCAGCAACCCTTGTTACC--TGTGGGAAAGCCCCATGTGGCCGGGACTTCC--------AGGGTGCCTGACATGTG----------TCCTCTGGTTATC i calJac3.chr14 C 0 I 852 s saiBol1.JH378218 3128638 176 - 7082604 TCGCGTGGGGCACAGCCGATGAC--TCACTGAATAACCCAGGGCAGGCGCA-------GACGCGTGAGCTGCC-CTGTGACCGTCGGCTCCC--CCGGCCCTGGGATGCCTGCAGCAACCCTTGTTACC--TGTGAGAAAGCCCCATGTGGCCGGGACCTCC--------AGGGTGCCTGAC--GTG----------TCATCTGGTTATC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 614617 188 + 5243153 TTGCATGGGGCACAGCTGATGATTGTCATTGAATAACCCGGGACAGGCACAGATGTATGACTCGTGAACTGCC-CTGTGACCATCGGCTCCT-GCTGGCCCTGGGATGCCTGCAGCAACCCTTGTTACC--TCTGAGAAAGCCCCACGTGGCCGGGACCTCC--------AGGGTGCCTGACATGTG----------TCCTCTGGTTGTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3357568 188 + 7587287 CTGTGTGTGGCACAGCTGATGACTGTCACTGAATAACCCGGGGCAGGCACAGATGCATGACGCGTGAGCTGCC-CCGTGACCATCAGCTCTT-GCCGGCCCTGGGATGCCTGCAGCAACCCTTGTTACC--TGTGAGAAAGCCCCACGTGGCCGGGACCTCC--------AGGGTGCCTGGCATGTG----------TCCTCTGGTTATC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2560832 134 + 5252280 TGTGGCAGGGC--------------------------------CGGACACCGAG--------------------CCGTGAGCATCGCCACCTTGTCTGTACACAGAATCCCACAGAAACCCTCGTCACA--------------CTGCGTGGCTGGGAGCCTA--------CGGGTGCCTGAAACAAGCCACATCTCTGCCCCCGTCTC-- i otoGar3.GL873658 I 132 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2058913 1036 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I a score=477607.000000 s hg38.chr2_KI270769v1_alt 76389 48 + 120616 ATAGTAAAATAGTACGCTGGGCCTGCTCAGATTCCTCACTACCCTGGA s panTro5.chr2A 3538200 48 + 111504155 ATAGTAAAATAGTACCCTGGGCCCGCTCAGATTCCTCACTACCCTGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3398947 48 + 114371477 ATAGTAAAATAGTACCCTGGGCCCGCTCAGATTCCTCACTACCCTGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 276771 48 + 637652 ATAGTAACATAGTACCCTGGGCCCGCTCAGATTCCTCACTACCCTGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3072725 48 + 81552678 ATAGTAAAATAGTACCCTGGGCCCGCTCAGATTCCTCACTACCCTGGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3335591 48 + 108979918 ATAGTAAAATAGTACGCTGGGCCTGCTCAGATTCCTCACTACCCTGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5046729 48 - 111193037 ATAGTAAAATAGTACGCTGGGCCTGCTCAGATTCCTCACTACCCTGCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3439395 48 + 3644372 ATAGTAAAATAGTACGCTGGGCCTGCTCAGATTCCTCACTACCCTGCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3394547 48 - 10304083 ATAGTAAAATAGTACGCTGGGCCTGCTCAGATTCCTCACTACGCTGGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3490472 48 - 107702431 ATAGTAAAATAGTACCCTGGGCCTGCTCAGATTCCTCACTACGCTGGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1027449 48 + 1565135 ATAGTAAAATAGTACGCTGGGCCTGCTCAGATTCCTCACTACGCTGGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3392066 48 - 13651311 ATAGTAAAATAGTACCCTGGGCCTGCTCAGATTCCTCACTACCCTGGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3484875 48 - 108792865 ATAGTAACACAGTACTCCGGGCCTGCTCAGGTTCCTCACTGCCCTGGA i calJac3.chr14 I 852 C 0 s saiBol1.JH378218 3128814 48 - 7082604 AAAGCAACATAGTACCCCGGGCCTGCCCACATTCCTCACTGCCCTGGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 614805 48 + 5243153 ATAGTAACATAGTGCCCCAGGCCTGCTCACATTCCTCACTGCCCTGGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3357756 48 + 7587287 ATAGTAACATAGTACCCCGGGCCTGCTCACATTCCTCACTGCCCTGGA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2560966 44 + 5252280 TGGACTGAACCGCACCCTGTGTCTGCTCGGGTTCCTCAC-ACCC---A i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2058913 1036 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I a score=4333394.000000 s hg38.chr2_KI270769v1_alt 76437 483 + 120616 GACAATCTCGGAAATTTTATTTCAGAGTCATATTTTGCACAATTTGAGAAGTAGATGCTGA-A---TTGCTTTTGCGTCTGGAAG------TGCTT------------CTCCTTCCAGGGGGAGCCACTGGCTTGACC----------------------------------------------------------------------ACAGCGAGGGCTCTGGCAATGAGGCTGGAGTCTCAGGAGGGAGGCTCAGCTTCCACAGTGTGATTTAAG--CCCCATCTGGCGCACAGAATGTGCTAACCAGGCTGCAAGGGAAGCCCTCGGTGTTCGCTTTTCTGAGGACACGGGGAGGTGATAG-CGGCGCTG----TGGGCAAGAGCTTTTGCCAAAGGAGAATGGAGAAAAAGACGGAAGCACCCAGGCCGACTGGACTCACCGACGCCCCACACAAGTG-CC--TCGATCTGCATCTCTTGCAAATTA-TTTATCAGGCCTCGCTCATGGGTATTTTTACTGTTGCTGAAGAGCAAGGTCTCTGAATTC--TGTTTTTCTAAAGGAAATGGAGATTGCAATACCT s panTro5.chr2A 3538248 483 + 111504155 GACAATCTCGGAAATTTTATTTCAGAGTCATATTTTGCACAATTTGAGAAGTAGATGCTGA-A---TTGCTTTTGCATCTGGAAG------TGCTT------------CTCCTTCCAGGGGGAGCCACTGGCTTGACC----------------------------------------------------------------------ACAGCGAGGGCTCTGGCAATGAGGCTGGAGTCTCAGGAGGGAGGCTTAGCTTCCACAGTGTGATTTAAG--CCCCATCTGGCACACAGAATGTGCTAACCGGGCTGCAAGAGAAGCCCTCGGTGTTTGCTGTTCTGAGGACACAGGGAGGTGATAG-CGGCGCTG----TGGGCAAGAGCTTTTGCCAAAGGAGAATGGAGAAAAAGACGGAAGCACCCAGGCCGACTGGACTCACCGACGCCCCACACAAGTG-CC--TTGATCTGCATCTCTTGCAAATTA-TTTATCAGGCCTCGCTCACGGGTATTTTTACTGTTGCTGAAGAGCAAAGTCTCTGAATTC--TGTTTTTCTAAAGGAAATGGAGATTGCAATACCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3398995 483 + 114371477 GACAATCTCGGAAATTTTATTTCAGAGTCATATTTTGCACAATTTGAGAAGTAGATGCTGA-A---TTGCTTTTGCATCTGGAAG------TGCTT------------CTCCTTCCAGGGGGAGCCACTGGCTTGACC----------------------------------------------------------------------ACAGCGAGGGCTCTGGCAATGAGGCTGGAGTCTCAGGAGGGAGGCTTAGCTTCCACAGTGTGATTTAAG--CCCCATCTGGCACACAGAATGTGCTAACCGGGCTGCAAGAGAAGCCCTCGGTGTTTGCTGTTCTGAGGACACAGGGAGGTGATAG-CGGCGCTG----TGGGCAAGAGCTTTTGCCAAAGGAGAATGGAGAAAAAGACGGAAGCACCCAGGCCGACTGGACTCACCGACGCCCCACACAAGTG-CC--TTGATCTGCATCTCTTGCAAATTA-TTTATCAGGCCTCGCTCATGGGTATTTTTACTGTTGCTGAAGAGCAAAGTCTCTGAATTC--TGTTTTTCTAAAGGAAATGGAGATTGCAATACCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 276819 483 + 637652 GACAATCTCGGAAATTTTATTTCAGAGTCATATTTTGCACAGTTTGAGAAGTACATGCTGA-A---TTGCTTTTGCATCTGGAAG------TGCTT------------CTCCTTCCAGGGGAAGCCACTGGCTTGACC----------------------------------------------------------------------ACAGCGAGGGCTCTGGCAATGAGGCTGGAGTCTCAGGAGGGAGGCTCAGCTTCCACAGTGTGATTTAAG--CCCCATCTGGCGCACAGAATGTGCTAACCAGGCTGCAAGGGAAGCCCTCGGTGTTCGCTGTTCTGAGGACACGGGGAGGTGATAG-CGGCGCTG----TGGGCAAGAGCTTTTGCCAAAGGAGAATGGAGAAAAAGACGGAAGCACCCAGGCCGTCTGGACTCACCGACGCCCCACACAAGTG-CC--TCGATCTGCATCTCTTGCAAATTA-TTTATCAGGCCTCGCTCACTGGTATTTTTACTGTTGCTGAAGAGCAAAGTCTCTGAATTC--TATTTTTCTAAAGGAAATGGAGATTGCAATACCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3072773 484 + 81552678 GACAATCTCGGAACTTGTATTTCAGAGTCGTATTTCGCACAATTTGAGAAGTAGATGCTGA-A---TTGCTTTTGCACCTGGAAG------TGCTT------------CTCCTTCCAGTGGGAGCCACTGGCTTGACC----------------------------------------------------------------------ACAGTGAGGGCTCTGGC-ATGAGGCTGGAGTCTCAGGAGGGAGGCTCCGCTTCCACAGCGTGTTTTAAG--CCCCATCTGGCTCACGGAGTGTGCTAAACGGGCTGCAAGGGAAGCCCTTGGTGTTCGCTGTTCTGAGGACCCGGGGAGGTGATAG-CGGCGCTG----TGGGCAAGAGCTTTTGCCAAAGGAGAATGGAGAAAAAGACTGAAGCACCCAGGCCGACTGGACTCACCGACACCCCACACAAGTG-CCGTTCGCTCTGCATCGCTTGCAAATTA-TTTATCAGGCCTTGCTCACGGGTATTTTTATTGTTGCTGAAGAGCAGAGTCTCTGAATTC--TGTTTTTCTAAAGGAAGTGGAGATTGCAATACCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3335639 489 + 108979918 GACAATCTCGGAAATTTTATTTCAGAGGCGTAGTATGCACAATTTGAGAAGTAGATGCTGA-G---TTGCTTTTGCATCTGGAAG------TGCTT------------CTCCTTCCAGTGGAAGCCACTGGCTTGACC----------------------------------------------------------------------ACAGTGAGGGCTCTGGCAGTGAGACTGGAGTCTCAGGAGGGAGGCTCAGCTTCCACAGCGTGATGTAAG--CCCCGTCTGGCGCACGGAATGTGCTAAACGGGCTGTGAGGGAAGCCCTCGGCGTTCGCTGTCCTGAGGACCCAGGGAGGTGACAG-CGGCTCTGTGTCTGGGCAGGAGATTTTGCCAAAGGAGAATGGAGAAAACGACGGAAGCACCCGGGCCGACTGGACTCACTGACGCCCCACACAAGCA-CTGTTCCGTCTGCACCTCTTTCAAATTA-TTTATCAGACCTCGCTCACGGGTATTTGTGTTGTTGCTGAAGAGCAAAGTCTCTGAATTC--TGTTTCTCTAAAGGAAATGGAGATCGCAGTACTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5046777 489 - 111193037 GACAATCTCGGAAATTTTATTTCAGAGGCGTAGTATGCACAATTTGAGAAGTAGATGCTGA-G---TTGCTTTTGCATCTGGAAG------TGCTT------------CTCCTTCCAGTGGAAGCCACTGGCTTGACC----------------------------------------------------------------------ACAGTGAGGGCTCTGGCAGTGAGACTGGAGTCTCAGGAGGGAGGCTCAGCTTCCACAGCGTGATGTAAG--CCCCGTCTGGCGCACGGAATGTGCTAAACGGGCTGTGAGGGAAGCCCTCGGCGTTCGCTGTCCTGAGGACCCAGGGAGGTGACAG-CGGCTCTGTGTCTGGGCAGGAGATTTTGCCAAAGGAGAATGGAGAAAACGACGGAAGCACCCGGGCCGACTGGACTCACTGACGCCCCACACAAGCA-CTGTTCCGTCTGCACCTCTTGCAAATTA-TTTATCAGACCTCGCTTACGGGTATTTGTGTTGTTGCTGAAGAGCAAAGTCTCTGAATTC--TGTTTCTCTAAAGGAAATGGAGATCGCAGTACTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3439443 487 + 3644372 GACAATCTCAGAAATTTTATTTCAGAGGCGTAGTATGCACAATTTGAGAAGTAGATGCTGA-G---TTGCTTTTGCATCTGGAAG------TGCTT------------CTCCTTCCAGTGGAAGCCACTGGCTTGACC----------------------------------------------------------------------ACAGTGAGGGCTCTGGCAGTGAGACTGGAGTCTCAGGAGGGAGGCTCAGCTTCCACAGCGTGATGTAAG--CCCCGTCTGGCGCACGGAATGTGCTAAACGGGCTGTGAGGGAAGCCCTCGGCGTTCGCTGTCCTGAGGACCCAGGGAGGTGACAG-CGGCTC--TGTCTGGGCAGGAGATTTTGCCAAAGGAGAATGGAGAAAACGACGGAAGCACCCGGGCCGACTGGACTCACTGACGCCCCACACAAGCA-CTGTTCCGTCTGCACCTCTTGCAAATTA-TTTATCAGACCTCGCTCACGGGTATTTGTGTTGTTGCTGAAGAGCAAAGTCTCTGAATTC--TGTTTCTCTAAAGGAAATGGAGATCGCAATACTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3394595 489 - 10304083 GACAATCTCGGAAATTTTATTTCAGAGGCGTAGTATGCACAATTTGAGAAGTAGATGCTGA-G---TTGCTTTTGCATCTGGAAG------TGCTT------------CTCCTTCCAGTGGAAGCTACTGGCTTGACC----------------------------------------------------------------------ACAGTGAGGGCTCTGGCAGTGAGACTGGAGTCTCAGGAGGGAGGCTCAGCTTCCACAGCGTGATGTAAG--CCCCGTCTGGCGCACGGAATGTGCTAAACGGGCTGTGAGGGAAGCCCTCGGCGTTCGCTGTCCTGAGGACCCAGGGAGGTGACAG-CGGCTCTGTGTCTGGGCAGGAGATTTTGCCAAAGGAGAACGGAGAAAACGACGGAAGCACCCGGGCCGACTGGACTCACCGACGCCCCACACGAGCA-CTGTTCCGTCTGCACCTCTTGCAAATTA-TTTATCAGACCTCGCTCACGGGTATTTGTGTTGTTGCTGAAGAGCAAAGTCTCTGAATTC--TGTTTCTCTAGAGGAAATGGAGATCGCAGTACTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3490520 489 - 107702431 GACAATCTCAGAAATTTTATTTCGGAGGCATAGTATGCACAATTTGAGAAGTAGATGCTGA-G---CTGCTTTTGCATCTGGAAG------TGCTT------------CTCCTTCCAGTGGGAGCCACTGGCTTGACC----------------------------------------------------------------------ACAATGAGGGCTCTGGCAGTGAGACTGGAGTCTCAGGAGGGAGGCTCAGCTTCCACAGCGTGATGTAAG--CCCCGTCTCGCACACGGAATGTGCTAAACGGGCTATGAGGGAAGCCCTTGGTGTTCGCTGTCCTGAGGACCCAGGGAGGTGACAG-CGGCTCTGTGTCTGGGCAAGAGATTTTGCCAAAGGAGAATGGAGAAAACGACGGAAGCACCCGGGCTGACTGGACTCACCGACGCCCCACATAAGCA-CTGTTCCATCTGCACCTCTTGCAAATTA-TTTATCAGACCTCGCTCACGGGTATTTGTGTTGTTGCTGAAGAGCAAAGTCTCTGAATTC--TGTTTCTCTAAAGGAAATGGAGATCGCAGTACTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1027497 489 + 1565135 GACAATCTCGGAAATTTTATTTCAGAGGCATAGTATGCACAATTTGAGAAGCAGATGCTGA-G---TTGCTTTTGCATCTGGAAG------TGCTT------------CTCCTTCCAGTGGAAGCCACTGGCTTGACC----------------------------------------------------------------------ACAGTGAGGGCTCTGGCAGTGAGACTGGAGTCTCAGGAGGGAGGCTCAGCTTCCACAGCGTGATGTAAG--CCCCGTCTGGCGCACGGAATGTGCTAAACGGGCTGTGAGGGAAGCCCTTGGCGTTCGCTGTCCTGAGGACCCAGGGAGGTGACAG-CGGCTCTGTGTCTGGGCAGGAGATTTTGCCAAAGGAGAATGGAGAAAACGACGGAAGCACCCGGGCCGACTGGACTCACCGACGCCCCACACAAGCA-CTGTTCCATCTGCACCTCTTGCAAATTA-TTTCTAAGACCTCGCTCACAGTTATTTGTGTTGTTGCTGAAGAGCAAAGTCTCTGAATTC--TGTTTCTCTAAAGGAAATGGAGATCGCAGTACTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3392114 460 - 13651311 GACAGTCTCAGAAATTTTATTTCAGAGGCATAGCATGCACAATTGGAGAAGTAGATGCTGA-G---TTGCTTTTGCATCTGGAAG------TGCTT------------CTCCTTCCAGTGGGAGCCACTGGCCTGACC----------------------------------------------------------------------ACAGTGAGGGCTCTGGCAGTGAGACTGGAGTCTCAGGAGGGAGGCTCAGCTTCCACAGCGTGATGTAAG--CCCCGTCTGGCGCACGGAATGTGCTAAACGGGCTGTGAGGGAAGCCCTCGGCATTCGCTGTCCCGAGGACCCAGGGAGGTCACAG-CAGCTCTGTAACTGGGCAAGAGATTTTGCCAAAGGAGAATGGAGAAAATGACGGAAGCACCCGGGCCGACTGGACTCACCGACGCCCCACACAAGCA-CTGTTCCATCTGCACCTCTTGCAAATTA-CTTATCAGACCTCACTCACGGGTATTTGTATTGTTGCTGAAGAGC-------------------------------AAATGGAGACTGCAGGACTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3484923 466 - 108792865 GATGATCTCAGAAGTTTTATTTCCGAGCCATGTTTTGCACAATTTGAGAAGTAGCTGCTGGAA---TCACTTTTGCATCTGGAAG------TGCCT------------CTCCTTCCAGTGGGAGTCAGTGGCTTGACC----------------------------------------------------------------------ACGCTGACTGCTCTGGCAATGAGGCTAGAGTC-CAGGAGGGAGGCTCAGGTTCCACAGCATGGTTTAAGCCCCCCATCCAGCATAGGAAATGTGCTAAACTGGCCGTGGGCGAAGCCCTTGGCGTTCACTGTTCTCAGGACCCCAGGAGGGGATGG-GGGCACTGCCTCTGGGCAGGAGTTTTCGCCAAAGGAGAATGTGGAGAAAGAC--AGGCATATGGGCTGACTGGACCCACTGAAGCCCCAAACACGGG-CCATTCCATCTGCA--------------------------TCTCTCACTGTTATTTTTATTATTGCTGACGAACGAAGTTGCCAAATTCTGTGTTTTTCTAAAGGAAATGAAGATTGCAATACTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3128862 493 - 7082604 GATGATCTCAGAAGTTTTATTTCTGAGCCATGTTTTGCACAATTGGAGAAGTAGATGCTGGAA---TCACTTTTGCATCTGGAAG------CGCCG------------CTCCTTCCAGTGGGAGCCACTGGCTTGACC----------------------------------------------------------------------ACACTGAGGGTTCTGGCAGTGAGGCTGGAGTCTCAGGAGGGAGGCTGAGCTTCCACAGCATGCTGTAAG-CCCCCATCCAGTGTAGGAAACGTGCTAAACTGGCCGTGGGGGAAGCCCTCGGCGTTCGCTGTTCTCAGGACCCCAGGAGGGGATGG-GGGCACTGCCTCTGGGCAGGAGCTTCTGCCAAAGGAGAACAGAGAGAAAGACAGAGGCGCGTGGGCTGAGCGGACTCACTGAAGCCCCACACAAGGG-CCGTCCCATCCACATCTGTTGCCAGTTA-ATGACTAGACCTCTCTCACTGATATTTTTATTGTTGCTGAAGAACAAAGTTGCTGAATTCCATGTTTTTCTAAAGGAAATGAAGATTGCAATACTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 614853 492 + 5243153 GATGATCTCAGAAGCTTTATTTCCGAGCCATGTTTTGCACAATTTGAGAAGTAGATGCTGGAA---TTGCTTTTGCATCTGGAAG------TGCCT------------CTCCTTCCAGTGGGAGCCACTGGCTTGACC----------------------------------------------------------------------ACACTGAGGGCTCTGGCAATGAGGCTGGAGCT-CAGGAGGGAGGCTGAGCTTCCACAGCATGCTTTAAGTCCCCCATCCAGCAAAGGAAATGTGCTAAACTGGCCACGGGGGAAGCCTTCGGCGTTAGCTGTTCTCAGGACCCCAGGAGGGGATGG-GGACGCTGCCTCTGGGCAGGAGCTTTCGCCAAAGGAGAATGGGGAGAAAGAC--AGGCACATGGGCTGACCAGACTCACTGAAGCCCCAAACAAGGG-CCATTCCATCTGCATCTCTTGCCAATTGCGTTACTAGACCTCTCTCACTGATATTTTTATTGTTGCTGAAGAACAAAGTTGCTGAATTTCATGTTTTTCTAAAGGAAATGAAGATTGCAATACTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3357804 493 + 7587287 GATGATCTCAGAAGTTTTATTTCTGAGCCATGTTTTGCACAATTTGAGAAGTAGATGCTGG-A---TCCCTTTTGCATCTGGAAG------TGCCT------------CTCCTTCCAGTGGGAGCCACTGGCTTGACC----------------------------------------------------------------------ACACTGAGGGCTCTGGCAGTGAGGCTGGAGTCTCAGGAGGGAGGCTCAGCTTCCACAGGGTGGTTTAAGCCCCCCATCCAGCATAGGAAATGTGCCAAACTGTCTGCGGGGGACGCCCTCGGCGTTCGCTGTTCTCAGGACCCCAGGAGGGGATGA-GGGCGCTGCCTCTGGGCAGGAGCTTTCGCCAAAGGAGAATGGGCAGAAAGACAGAGGCACATGGGCTGACTGGACTCACCGAAGCCCCAGACAAGTG-CCGTTCCATCTGCATCTCTTGCCAATTA-ATTACTAGACCTCTCTCACTGATATTTTTGATGTTGCTGAGGAACAAAGTTGCTGAATTCCGTGTTTTTCTAAAGGAATTGAAGATTGCAATACTT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2561010 348 + 5252280 GAGAGGCTCAGAAACTTCCTTTC--AGGCTGAATTTGCAGAGGTAGAGAAGTAGATGCAGG-AGACCCATGTAGGCGTCTGAGTGGTGCCATCCCT------------CCTCTCCCAGTGGAG--TGCTGGCCTGCCC----------------------------------------------------------------------AGGCCAAGGGTAC-AGCAGGAAGGCCGGAGTCTCTGGGGGG------------------------TGAG----------------GAGAAT---------CAGCTGCGAGGGACACTGCTCAAGTTCACCATTCTCA-GACCAGGGAAGGCGACAGCCAGAGCTGTGCCTGGTTGGGGACTTTGACTGAGAGAAAGAGGGATGAAAGACAGAAGCAGACGGGGGGCCTGAGC-CACCGAAGGCCCAAATGAGTGACCACTCAGTCTTTCACTCTAGACA----------------------------------------------------------------------------------------------------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2059949 531 + 64289059 GACAAAGTCAGAAATTTCATTTCTGAGTCTCGGTTCACATAATTTGAAGAATATATGCCGG-A--------TTTCCATTTAGGAA------TCCCGAGACCTGAAACACGTCTTGCAGCGGGAGTCGTGGATCCGACCGAGTACCGCGGTCGTGTCAGGCTGGGACTGTGTGAACATTTCCCTGCAGACATTCCTGGCCCCAGCTCGTACAGAGAACTCTCTAG-----ACACAGAAATCCTGGAGAGAAGTACCAGCTTCCACAGTG-GGTTTGTG------------------GAAGGTGGCAAACAG--TGCAGGGGAAGCTCGTGATCTTCCTCCCTCTCAGGGTGGAGGGAAGTGATGC-C-----------TGGTCAGGAATTCCCACCGGGTGAAGACAGGAAGACAGACAAAGGAAGCT-GGTTGACCTGACTCCCTGA-ATCCCAGTCGAGTG-GCCAGGGGACCTCATCGCTCAGAAACTG-TTTGTCAGACACCTCTCACTGATAGGTTTACCGCTGCCCGAGAACACACCGTCGGAACTCGGTGACTTAGAAAAGGAGACCAAGACTGCGCTACTT i canFam3.chr17 I 1036 I 739 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I a score=217680.000000 s hg38.chr2_KI270769v1_alt 76920 26 + 120616 AGCTATTTGGGATATCTCTGAAGACG s panTro5.chr2A 3538731 26 + 111504155 AGCTATTTGGGATATCTCTGAAGACG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3399478 26 + 114371477 AGCTATTTGGGATATCTCTGAAGACG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 277302 26 + 637652 AGCTATTTGGGATATCTCTGAAGACG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3073257 26 + 81552678 AGCCATTTGGGACATCTCTGAAGACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3336128 24 + 108979918 AGCCATTTGGGGTA--TCTGAAGACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5047266 24 - 111193037 AGCCATTTGGGGTA--TCTGAAGACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3439930 26 + 3644372 AGCCATTTGGGGTATCTCTGAAGACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3395084 26 - 10304083 AGCCATTTGGGGTATCTCTGAACACG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3491009 26 - 107702431 AGCCATTTGGGGTATCTCTGAAGATG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1027986 26 + 1565135 AGCCATTTGGGGTATCTCTGAAGACG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3392574 26 - 13651311 AGCCATTTGGGATCTCTCTGAAGACG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3485389 26 - 108792865 AGCTGTCTGGGATATCTTTTAAGACG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3129355 26 - 7082604 AGCCGCCTGGGACATCTCTTAAGATG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 615345 26 + 5243153 AGCCATCTGGGATATCTCTTAAGACG i cebCap1.NW_016107454v1 C 0 I 63 s aotNan1.NW_018509326v1 3358297 26 + 7587287 AGCCGTCTGGGGTATCTCTTAAGATG i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e otoGar3.GL873658 2561358 0 + 5252280 C a score=40575.000000 s hg38.chr2_KI270769v1_alt 76946 5 + 120616 TTGTG s panTro5.chr2A 3538757 5 + 111504155 TTGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3399504 5 + 114371477 TTGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 277328 5 + 637652 TTGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3073283 5 + 81552678 CTGTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3336152 5 + 108979918 TTGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5047290 5 - 111193037 TTGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3439956 5 + 3644372 CTGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3395110 5 - 10304083 TTGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3491035 5 - 107702431 TTGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1028012 5 + 1565135 TTGTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3392600 5 - 13651311 TTGTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3485415 5 - 108792865 CTGTG i calJac3.chr14 C 0 I 2 s saiBol1.JH378218 3129381 5 - 7082604 CCGTG i saiBol1.JH378218 C 0 I 2 s aotNan1.NW_018509326v1 3358323 5 + 7587287 CTGTG i aotNan1.NW_018509326v1 C 0 I 49 s otoGar3.GL873658 2561358 5 + 5252280 CTACC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e cebCap1.NW_016107454v1 615371 63 + 5243153 I a score=331856.000000 s hg38.chr2_KI270769v1_alt 76951 57 + 120616 ACGTGGCTGCTACAGAACTTCTCAGACAGCCTCGCGCAGCTGACGACTGCATTGCCA s panTro5.chr2A 3538762 57 + 111504155 CCGTGGCTGCTACAGAACTTCTCAGACAGCCTCGCGCAGCTGATGACTGCATTGCCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3399509 57 + 114371477 CCGTGGCTGCTACAGAACTTCTCAGACAGCCTCGCGCAGCTGACGACTGCATTGCCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 277333 57 + 637652 CCGTGGCCGCTACAGAACTTCTCAGACAGCCTCACGCAGCTGACGACTGCATTGCCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3073288 57 + 81552678 CCGTGGCTGCTACAGAACTTCCCAGACAGCCTCGCGCAGCAGACGACTGCGCTGCCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3336157 57 + 108979918 CCATGGCTGCTACAGAACTTCTCAGACAGCCTCGCGCGACGGACGGCTGCACTGCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5047295 57 - 111193037 CCATGGCTGCTACAGAACTTCTCAGACAGCCTCGCGCGACGGACGGCTGCACTGCCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3439961 57 + 3644372 CCATGGCTGCTACAGAACTTCTCAGACAGCCTCGCACGACGGACGGCTGCACTGCCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3395115 57 - 10304083 CCATGGCTGCTACAGAACTTCTCAGACAGCCTCGCGCGACGGACGGCTGCACTGCCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3491040 54 - 107702431 CCATGGCTGCTACAGAA---CTCAGACAGCCTCGCGCGATGGACGGCTGCACTGCCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1028017 57 + 1565135 CCATGGCTGCTACAGAACTTCTCAGACAGGCTCGTGCGACGGACGGCTGCACTGCCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3392605 57 - 13651311 CCATGGTTGCTACAGAACTTCTCAGACAGCCTCGCGCAACGGACGGCTGCACTGCCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3485422 45 - 108792865 CCATGGC-ACTGCAGGAGGAGTCCTGCAGCCTCGCATTGT-----------CTGCCA i calJac3.chr14 I 2 I 2 s saiBol1.JH378218 3129388 44 - 7082604 CCATGGC-GCTGCGGGACCCCTCCTGCAGCCTCGACCTGC-----------CT-CCA i saiBol1.JH378218 I 2 I 2 s otoGar3.GL873658 2561363 48 + 5252280 CTGTGGCCACTGGTCAGCTTCTCAGGCATCCTCGCTCCGTTGCCTGCT--------- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e cebCap1.NW_016107454v1 615371 63 + 5243153 I e aotNan1.NW_018509326v1 3358328 49 + 7587287 I a score=65529.000000 s hg38.chr2_KI270769v1_alt 77008 10 + 120616 TCTGCACATA s panTro5.chr2A 3538819 10 + 111504155 TCTGCACATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3399566 10 + 114371477 TCTGCACATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 277390 10 + 637652 TCTGCACATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3073345 10 + 81552678 TCTGTGCATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3336214 10 + 108979918 TCTGCGCACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5047352 10 - 111193037 TCTGCGCACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3440018 10 + 3644372 TCTGCGCACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3395172 10 - 10304083 TCTGTGCACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3491094 10 - 107702431 TCTGCGTACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1028074 10 + 1565135 TCTGCGCACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3392662 10 - 13651311 TCTGCACACA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3485469 10 - 108792865 TCTGCGCGTC i calJac3.chr14 I 2 C 0 s saiBol1.JH378218 3129434 10 - 7082604 TCTACGCGGC i saiBol1.JH378218 I 2 C 0 s aotNan1.NW_018509326v1 3358377 10 + 7587287 TCTGCACGTC i aotNan1.NW_018509326v1 I 49 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e otoGar3.GL873658 2561411 0 + 5252280 C e cebCap1.NW_016107454v1 615371 63 + 5243153 I a score=877092.000000 s hg38.chr2_KI270769v1_alt 77018 99 + 120616 CAGAAAACCCAG-CCCCAGTAAGTTCCGGCTTG-GGCAGGTCAGTGTGTTGTCTGAAGATGCT---------------------------------------------------------GGATCTG-GGAAGAAGGATGAAGCAGGCAGGTTTTGCCC s panTro5.chr2A 3538829 99 + 111504155 CAGAAAACCCGG-CCCCAGTAAGTTCCGGCGTG-GACAGGTCAGTGTGTTGTCTGAAGATGCT---------------------------------------------------------GGATCTC-GGAAGAAGGATGAAGCAGGCAGGTTTTGCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3399576 99 + 114371477 CAGAAAACCCGG-CCCCAGTAAGTTCCGGCGTG-GACAGGTCAGTGTGTTGTCTGAAGATGCT---------------------------------------------------------GGATCTC-GGAAGAAGGATGAAGCAGGCAGGTTTTGCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 277400 99 + 637652 CAGAAAACCCGG-CCCCAGTAAGTTCCGGCTTG-GCCAGGTCAGTGTATTGTCTGAAGATGCT---------------------------------------------------------GGATCTG-GGAAGAAGGATGAAGCAGGCAGGTTTTGCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3073355 98 + 81552678 CAGAAAACCCGG--CCCAGTAAGTTCCGGCTTC-AGCAGGCCAGTGTGTTGTCTGAAGATGCT---------------------------------------------------------GGATCTC-GGAAGAAGGATGAAGCAGGCAGGGTTTGCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3336224 99 + 108979918 CAGAAAACCCAG-CCCCTGGAAGTTCCTGCTTC-GGCAGGTCAGTGTGTGGTCTGAAGATGCT---------------------------------------------------------GGATCTC-GGAAGGAGAGTGAAGCAGGCAGGTTTTGCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5047362 99 - 111193037 CAGAAAACCCAG-CCCCTGGAAGTTCCTGCTTC-GGCAGGTCAGTGTGTGGTCTGAAGATGCT---------------------------------------------------------GGATCTC-GGAAGGAGAGTGAAGCAGGCAGGTTTTGCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3440028 99 + 3644372 CAGAAAACCCAG-CCCCTGGAAGTTCCTGCTTC-GGCAGGTCAGTGTGTGGTCTGAAGATGCT---------------------------------------------------------GGATCTC-GGAAGGGGAGTGAAGCAGGCAGGTTTTGCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3395182 99 - 10304083 CAGAAAACCCAG-CCCCTGGAAGCTCCTGCTTC-GGCAGGTCAGTGTGTGGTCTGAAGATGCT---------------------------------------------------------GGATCTC-GGAAGGAGGGTGAAGCAGGCAGGTTTTGCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3491104 98 - 107702431 CAGAAAACCCAG-CCCCTGGAAGTTCCTGCTTC-GGCAGGTCAGTGTGTGGTCTGAAGATGCT----------------------------------------------------------GATCTC-GGAAGGAGGGTGAAGCAGGCAGCTTTTGCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1028084 99 + 1565135 CAGAAAACCCAG-TCCCTGGAAGCTCCTGCTTC-GGCAGGTCAGTGTGTGGTCTGAAGATACT---------------------------------------------------------GGATCTC-GGAAGGAGGGTGAAGCAGGCAGGTTTTGCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3392672 99 - 13651311 CAGAAAACCCAG-CCCCTGGAAGTTCCTGCTTC-GGCAGGTCAGTGTGTTGTCTGAAGATGCT---------------------------------------------------------GGATCTC-GGAAGAAGGGTGAAGCAGGCAGGTTTTGCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3485479 96 - 108792865 CAGAAAACCCAACCCCCACTAAGCTCCTGCTT----CAGGTCAGCATGTTGT-TGAGGACGCT---------------------------------------------------------GGATCTC-AGAAGGAAGATGAAGCAGGCAGGTTTTGCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3129444 98 - 7082604 TGGAAAACTCAGCCCCCGCTAAGTTCCTGCTTC-GGCAGGTCAGCATGTTGT-TGAAGATGCG---------------------------------------------------------GGATCTC-AGAAGAAAGATGAAGCAGGCAGG-TTTGCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 615434 98 + 5243153 CAGAAAACCCAG-CCCCGCTAAGTTCCTGCTTC-GGCAGGTCAGCGTGTTGT-TGAAGATGCG---------------------------------------------------------GGATCTC-AGAAGAAAGATGAAGGAGGCAGGTTCTGCCC i cebCap1.NW_016107454v1 I 63 C 0 s aotNan1.NW_018509326v1 3358387 156 + 7587287 CAGAAAACCCAGCCCCCGCTAAGTTCCTGCTTC-GGCAGGTCAGTGTGTTGT-TGAAGATGCGGGATCTCAGAAGAAGGAGTTCCCTCATGGGCAGGTCAGTGTGCTGTCTGAAGATGCTGGATCTC-AGAAGAAAGATGAAGCAGGCCGGTTTTGCCC i aotNan1.NW_018509326v1 C 0 I 312 s otoGar3.GL873658 2561411 100 + 5252280 -AGAACATTTAG-CCGCTGACAATTCCCATTTCAGACTGGTCAGTGTGCTACCTGAAAATCCC---------------------------------------------------------AGGTCTGAGGGAACAGGATGAAACAAGGAGGTTTCAGCC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I a score=176403.000000 s hg38.chr2_KI270769v1_alt 77117 22 + 120616 TTGAAGAACACAGCCATTTGTG s panTro5.chr2A 3538928 22 + 111504155 TTGAAGAACACAGGCATTTGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3399675 22 + 114371477 TTGAAGAACACAGGCATTTGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 277499 22 + 637652 TTGAAGAACACAGCCATGTGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3073453 22 + 81552678 TTGAAGAACACAGCCATTTGTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3336323 22 + 108979918 TAGAAGAACATAGCCATTTGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5047461 22 - 111193037 TAGAAGAACATAGCCATTTGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3440127 22 + 3644372 TAGACGAACATAGCCATTTGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3395281 22 - 10304083 TAGAAGAACATAGCCATTTGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3491202 22 - 107702431 TAGAAGAACACAGCCATTTGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1028183 22 + 1565135 TAGAAGAACACAGCCATTTGTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3392771 22 - 13651311 TAGAAGAAAGTAGCCATTTGTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3485575 22 - 108792865 TCCAAGAACACAGCCATTTGTG i calJac3.chr14 C 0 I 297 s saiBol1.JH378218 3129542 22 - 7082604 TCCAAGAACACAGCCATTTGTG i saiBol1.JH378218 C 0 I 299 s cebCap1.NW_016107454v1 615532 22 + 5243153 TCCAAGAACACAGCCATTTGTG i cebCap1.NW_016107454v1 C 0 I 302 s otoGar3.GL873658 2561511 20 + 5252280 -TCAAAGTCATAACCATTTGG- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I a score=642474.000000 s hg38.chr2_KI270769v1_alt 77139 112 + 120616 GGAGTCAAGGCCCGAGAGCACCGTTGTGATCAGCAAGAACGACCACATATCAGCCCAGTGGATGCCCGAGCACACAGCAGACCCCCACCCA---GTTCTGA-----AACACTCCTGGGTG s panTro5.chr2A 3538950 112 + 111504155 GGAGTCAAGGCCCGAGAGCACCGTTGTGATCAGCAAGAACGACCACATATCAGCCCAGTGGATGCCCGAGCACACAGCAGACCCCCACCCA---GTTCTGA-----AACCCTCCTGGGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3399697 112 + 114371477 GGAGTCAAGGCCCGAGAGCACCGTTGTGATCAGCAAGAACGACCACATATCAGCCCAGTGGATGCCCGAGCACACAGCAGACCCCCACCCA---GTTCTGA-----AACCCTCCTGGGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 277521 112 + 637652 GGAGTCAAGGCCCGAGAGCACCGTTGTGATCAGCAAGAACGACCACATATCAGCCCAGTGGATGCCCGAGCACACAGCAGACCCCCACCCA---GTTCTGA-----AACCCTCCTGGGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3073475 111 + 81552678 GGAGTTGAGG-CCGAGAGCACCGTTGTGATCAGCAAGAACAACCACATATCAGCCTAGTGGGTGCCCGAGCCCACAGCAGACCCCCACCCA---GTTCTGA-----ATCCCTCCTGGGTG i nomLeu3.chr19 C 0 I 12 s rheMac8.chr13 3336345 111 + 108979918 GGAGTCAAGGCCCAAGAGCGCCGTTGCGATCAGCAAGAACGACCACATGTCAGCCCAGTGGGTGCCCGAGCACACAGCAGACCCCCACCCA----TTCTGA-----AACCCTCCTGGGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5047483 111 - 111193037 GGAGTCGAGGCCCGAGAGCGCCGTTGCGATCAGCAAGAACGACCACATGTCAGCCCAGTGGGTGCCCGAGCACACAGCAGACCCCCACCCA----TTCTGA-----AACCCTCCTGGGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3440149 111 + 3644372 GGAGTCGAGGCCCGAGAGCGCCGTTGCGATCAGCAAGAACGACCACATGTCAGCCCAGTGGGTGCCCGAGCACACAGCAGACCCCCACCCA----TTCTGA-----AACCCTCCTGGGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3395303 111 - 10304083 GGAGTCGAGGCCCGAGAGCACCATTGCGATCAGCAAGAACGACCACATGTCAGCCCAGTGGGTGCCTGAGCACACAGCAGACCCCCACCCA----TTCTGA-----AGCCCTCCTGGGTG i cerAty1.NW_012000820v1 C 0 I 29 s chlSab2.chr14 3491224 111 - 107702431 GGAGTCGAGGCCTGAGAGCGCCATTGTGATCAGCAAGAACGACCACATGTCAGCCCAGTGGGTGCCCGAGCACACAGCAGACCCCCACCCA----TTCTGA-----AACCCTCCTCGGTG i chlSab2.chr14 C 0 I 33 s manLeu1.NW_012104432v1 1028205 111 + 1565135 GGAGTCGAGGCCCGAGAGCACCATTGCGATCAGCAAGAACGACCACATGTCAGCCCAGTGGGTGCCCGAGCACACAGCAGACCCCCACCCA----TTCTGA-----AACCCTCCTGGGTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3392793 111 - 13651311 GGAGTCGAGGCCCGAGAGCGCCGTTGCGATCAGCAAGAACAACCACATGTCAGCCCAGTGGGTGCCCGAGCACACAGCAGACCCCCACCCA----TTCGGA-----AACCCTCCTGGGTG i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2561531 102 + 5252280 GGGGTTGAGGTCTGTGACTAACAT---GATCAGCACCCAGGGCCA----TCTGCCTCGTAG-----------CCCGCCAGGCCTCACCTCATTCGTGCTGAGTGGCAACCCATCTGTCCC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I a score=11545.000000 s hg38.chr2_KI270769v1_alt 77251 4 + 120616 CACC s panTro5.chr2A 3539062 4 + 111504155 CACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3399809 4 + 114371477 CACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 277633 4 + 637652 CACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3073598 4 + 81552678 CACC i nomLeu3.chr19 I 12 C 0 s rheMac8.chr13 3336456 4 + 108979918 CACC i rheMac8.chr13 C 0 I 39 s macFas5.chr13 5047594 2 - 111193037 CA-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3440260 4 + 3644372 CACC i macNem1.NW_012011978v1 C 0 I 39 s manLeu1.NW_012104432v1 1028316 4 + 1565135 CACC i manLeu1.NW_012104432v1 C 0 I 39 s colAng1.NW_012118821v1 3392904 4 - 13651311 CACC i colAng1.NW_012118821v1 C 0 I 39 s otoGar3.GL873658 2561633 4 + 5252280 AGCC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I e chlSab2.chr14 3491335 33 - 107702431 I e cerAty1.NW_012000820v1 3395414 29 - 10304083 I a score=8348.000000 s hg38.chr2_KI270769v1_alt 77255 11 + 120616 -TGGACCCGCCC s panTro5.chr2A 3539066 11 + 111504155 -TGGACCCGCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3399813 11 + 114371477 -TGGACCCGCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 277637 11 + 637652 -TGGACCCGCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3073602 11 + 81552678 -TGTACCCGCCC i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5047596 6 - 111193037 ------CCGCCT i macFas5.chr13 C 0 I 3 s otoGar3.GL873658 2561637 11 + 5252280 AGAAACCAGCC- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I e colAng1.NW_012118821v1 3392908 39 - 13651311 I e manLeu1.NW_012104432v1 1028320 39 + 1565135 I e chlSab2.chr14 3491335 33 - 107702431 I e cerAty1.NW_012000820v1 3395414 29 - 10304083 I e macNem1.NW_012011978v1 3440264 39 + 3644372 I e rheMac8.chr13 3336460 39 + 108979918 I a score=4813.000000 s hg38.chr2_KI270769v1_alt 77266 3 + 120616 TCT s panTro5.chr2A 3539077 3 + 111504155 TCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3399824 3 + 114371477 TCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 277648 3 + 637652 TCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3073613 3 + 81552678 TCT i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5047605 3 - 111193037 TCG i macFas5.chr13 I 3 C 0 s cerAty1.NW_012000820v1 3395443 3 - 10304083 TCG i cerAty1.NW_012000820v1 I 29 C 0 s otoGar3.GL873658 2561648 3 + 5252280 TCC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I e colAng1.NW_012118821v1 3392908 39 - 13651311 I e manLeu1.NW_012104432v1 1028320 39 + 1565135 I e chlSab2.chr14 3491335 33 - 107702431 I e macNem1.NW_012011978v1 3440264 39 + 3644372 I e rheMac8.chr13 3336460 39 + 108979918 I a score=48357.000000 s hg38.chr2_KI270769v1_alt 77269 25 + 120616 -----CCAGACCTCTCCTGTGTTGGGACCT s panTro5.chr2A 3539080 25 + 111504155 -----CCAGACCTCTTCTGTGCTGGGACCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3399827 25 + 114371477 -----CCAGACCTCTTCTGTGCTGGGACCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 277651 25 + 637652 -----CCAGACCTCTCCTGTGTTGGGGCTT i gorGor5.CYUI01015435v1 C 0 I 4 s nomLeu3.chr19 3073616 25 + 81552678 -----CCAGCCCTCTCCTGTGTTGGGGCTT i nomLeu3.chr19 C 0 I 4 s macFas5.chr13 5047608 25 - 111193037 -----CCAGCCGTCTCCTGTGCTGGGGCTT i macFas5.chr13 C 0 I 4 s cerAty1.NW_012000820v1 3395446 25 - 10304083 -----CCAGCCGTCTCCTGTGCTGGGGCTT i cerAty1.NW_012000820v1 C 0 I 4 s chlSab2.chr14 3491368 25 - 107702431 -----CAAGCCCTCTCCTGTGCTGGGGCTT i chlSab2.chr14 I 33 I 4 s otoGar3.GL873658 2561651 29 + 5252280 AAGCATCATTCATGTCCCAGCTCTGAGCT- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I e colAng1.NW_012118821v1 3392908 39 - 13651311 I e manLeu1.NW_012104432v1 1028320 39 + 1565135 I e macNem1.NW_012011978v1 3440264 39 + 3644372 I e rheMac8.chr13 3336460 39 + 108979918 I a score=2002511.000000 s hg38.chr2_KI270769v1_alt 77294 348 + 120616 ---CTCCTCA--TCTCCGCT----GGGTTCAGCAGAGGGTTGCAGAGGCGGGACCCTGTGTGTACACGTGGTGCTGAGCTGCCAGAGATCTCAGCACGTCCCTCGTCCCCCGTCCTGCGCGTAGCTGCCATTAGCCTTCCGGGAGTACACTCCACCCTGCCGTCTCTGGTCAGAGGTCCTGCTAGGGCCTTGTGGCCTGTCAGGTGAGCCCACACTTAAAGCTCACATT-----------CAGAgccctagctaaccttttccagcccagtgttcttcgcctcatgtccttagt---cccaccagacagttgatttgctgttgcccaaacgggaccacacttgctgctttgacctctcgtgggctgttcct s panTro5.chr2A 3539105 348 + 111504155 ---CTCCTCA--TCTCCGCT----GGGTTCAGCAGAGGGTTGCAGAGGCGGGACCCTGTGTGTACACGTGGTGCTGAGCTGCCAGAGATCTCAGCACGTCCCTCGTCCCCCGTCCTGCGCGTAGCTGCCATTAGCCTTCCGGGAGTACACTCCACCCTGCCGTTTCTGGTCAGAGGTCCTGCTAGGGCCTTGTGGCCTGTCAGGTGAGCCTACACTTAAAGCTCACATT-----------CAGAGCcctagctaaccttttccagcccagtgttcttcgcctcatgtccttagt---cccaccagacagttgatttgctgttgcccagatgggaccacacttgctgctttgacctctcgtgggctgttcct i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3399852 348 + 114371477 ---CTCCTCA--TCTCCGCT----GGGTTCAGCAGAGGGTTGCAGAGGCGGGACCCTGTGTGTACACGTGGTGCTGAGCTGCCAGAGATCTCAGCACGTCCCTCGTCCCCCGTCCTGCGCGTAGCTGCCATTAGCCTTCCGGGAGTACACTCCACCCTGCCGTTTCTGGTCAGAGGTCCTGCTAGGGCCTTGTGGCCTGTCAGGTGAGCCTACACTTAAAGCTCACATT-----------CAGAGCcctagctaaccttttccagcccagtgttcttcgcctcatgtccttagt---cccaccagacagttgatttgctgttgcccagatgggaccacacttgctgctttgacctctcgtgggctgttcct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 277680 348 + 637652 ---CTCCTCA--TCTCCGCT----GGGTTCAGCAGAGGGTTGCAGAGGCGGGACCCTGTGTTTACACGTGGTGCTGAGCTGCCAGAGATCTCAGCACGTCCCTCGTCCCCCATCCTGCGCGTAGCTGCCATTAGCCTTCCGGGAGTACACTCCACCCTGCCGTCTCTGGTCAGAGGTCCTGCTAGGGCCTTGTGGTCTGTCAGGTGAGCCCACACTCACAGCTCACATT-----------CAGAgccctagctaaccttttccagctcagtgttcttcgcctcatgtccttagt---cccaccagacagttgatttgctgttgcccagacgggaccacacttgctgctttggcctctcgtgggctgttcct i gorGor5.CYUI01015435v1 I 4 C 0 s nomLeu3.chr19 3073645 348 + 81552678 ---CTCCTCA--TCTCCACT----GGGTTCAGCAGAGGGTTGCAGAGGCGGGACCCTGTGTGTACACGTGGTGCTGAGCTGCCAGAGATCTCAGCATGTCCCTCGTCCCCCATCCTGCGCGCAGCTGCCATTAGCCTTCCGGGAGTACACTCCACCCTGCCGTCTCTGGTCAGAGGTCCTGCTGGGGACCTGTGGCCTGTCAGGTGAGCCCACACTTAAAGCTCACATT-----------CAGAGCCCTACCTAACCTTTTCCAGCCCAGTGTTCTTCACCTCGCGTCCTTACT---CCCCTCAGACAGCTGATTTGCTGTTGCCCAGACGGGACCACACATGCTGCTTTGACCTCTCGTGGGCTGTTCCT i nomLeu3.chr19 I 4 M 100 s rheMac8.chr13 3336499 348 + 108979918 ---CTCCTCA--TCTCCGCT----GGGTTCAGCAGAGGGTTGCAGAGGCGGGACCCTGTGTGTACACGTGGTGCTGAGCTGCCAGAGATCTCAGCACGTCCCTCATCCCCCGTCCTGTGTGCAGCTGCCATTAGCCTTCCTGGAGGACGCTCCACCCTGCCGTCTCTGCTCAGAGCTCCTGCTGGGGCCCTGTGGCCTGGCCGCTGAGCCCACACTGAAAGTTCCCATT-----------CAGAGCCCTAGCTAATGTTTTCTAGCCCAGTGTtcttcgcctcgtgtcctcagt---cccaccagacggttgatttgctgctgcccagacagggccacccttgctgcttttacctctcgtgggctgttcct i rheMac8.chr13 I 39 C 0 s macFas5.chr13 5047637 348 - 111193037 ---CTCCTCA--TCTCCGCT----GGGTTCAGCAGAGGGTTGCAGAGGCGGGACCCTGTGTGTACACGTGGTGCTGAGCTGCCAGAGATCTCAGCACGTCCCTCATCCCCCGTCCTGTGTGCAGCTGCCATTAGCCTTCCTGGAGTACGCTCCACCCTGCCGTCTCTGCTCAGAGCTCCTGCTGGGGCCCTGTGGCCTGGCCGCTGAGCCCACACTGAAAGTTCCCATT-----------CAGAGCCCTAGCTAATGTTTTCTAGCCCAGTGTTCTTCGCCTCGTGTCCTCAGT---CCCACCAGACGGTTGATTTGCTGCTGCCCAGACAGGGCCACCCTTGCTGCTTTTACCTCTCGTGGGCTGTTCCT i macFas5.chr13 I 4 C 0 s macNem1.NW_012011978v1 3440303 348 + 3644372 ---CTCCTCA--TCTCCGCT----GGGTTCAGCAGAGGGTTGCAGAGGCGGGACCCTGTGTGTACACGTGGTGCTGAGCTGCCAGGGATCTCAGCACGTCCCTCGTCCCCCGTCCTGTGGGCAGCTGCCATTAGCCTTCCTGGAGTACACTCCACCCTGCCGTCTCTGGTCAGAGCTCCTGCTGGGGCCCTGTGGCCTGTCCGCTGAGCCCACACTGAAAGTTCCCATT-----------CAGAGCCCTAGCTAATGTTTTCTAGCCCAGTGTTCTTCGCCTCGTGTCCTCAGT---CCCACCAGACGGTTGATTTGCTGCTGCCCAGACAGGGCCACCCTTGCTGCTCTTACCTCTCGTGGGCTGTTCCT i macNem1.NW_012011978v1 I 39 C 0 s cerAty1.NW_012000820v1 3395475 348 - 10304083 ---CTCCTCA--TCTCCGCT----GGGTTCAGCAGAGGGTTGCAGAGGCGGGACCCTGTGTGTACATGTGGTGCTGAGCTGCCAGAGATCTCAGCACGTCCCTCGTCCCCCGTCCTGTGTGCAGCTGCCATTAGCCTTCCTGGAGTACACTCCACCCTGCCGCCTCTGGTCAGAGCTCCTGCTGGGGCCCTGTGGCCTGTCAGCTGAGCCCACACTTAAAGTTCCCATT-----------CAGAGCCCTAGCTAATGTTTTCCAGcccagtgttcttcgcctcgtgtcctcagt---cccaccagacggttgatttgctgctgcccagacagggccacccttgctgcttttacctctcgtgggctgttcct i cerAty1.NW_012000820v1 I 4 C 0 s chlSab2.chr14 3491397 348 - 107702431 ---CTCCTCA--TCTCCGCT----GGGTTCAGCAGAGGGTTGCAGAGGCGGGACCCTGTGTGTACACGTGGTGCTGAGCTGCCAGAGATCTCAGCACGTCCCTCGTCCCCCGTCCTGTGCGCAGCTGCCATTAGCCTTCCTGGAGTACACTCCACCCTGCCGCCTCTGGTCAGAGCTCCTGCTGGGGCTGTGTGGCCTGTCAGCTGAGCCCACACTTAAAGTTCCCATT-----------CAGAGCCCTAGCTAATGTTTTCTAGCCCAGTGTTCTTCACCTCGTGTCCTCAGT---CCCACCAGATGGTTGATTTGCTGCTGCCCAGATGGCGCCACCCTTGCTGCTTTTACCTCTCGTGGGCTGTTCCT i chlSab2.chr14 I 4 C 0 s manLeu1.NW_012104432v1 1028359 348 + 1565135 ---CTCCTCA--TCTCCGCT----GGGTTCAGCAGAGGGTTGCAGAGGCGGGACCCTGTGTGTACACGTGGTGCTGAGCTGCCAGAGATCTCAGCACGTCCCTCGTCCCCCGTCCTGTGTGCAGCTGCCATTAGCCTTCCTGGAGTACACTCCACCCTGCCGTCTCTGGTCAGAGCTCCTGCTGGGGCCCTGTGGCCTGTCAGCTGAACCCACACTTAAAGTTCCCATT-----------CAGAGCCCTAGCTAATGTTTTCTAGCCCAGTGTtcttcgcctcgtgtcctcagt---cccaccagacggttgatttgctgctgcccagacagggccacccttgctgcttttacctctcgtgggctgttcct i manLeu1.NW_012104432v1 I 39 C 0 s colAng1.NW_012118821v1 3392947 324 - 13651311 ---CTCCTCA--TCTCCGCT----GGGTTCAGCAGAGGGTTGCAGGGGCGGGACCCTGTGTGTACACATGGTGCTGAGCTGCCAGAGATCTCAGCACGTCCCTAGTGCCCTGTCCTGTGTGCAGCTGC-----------------------CCACCCTGCCGTCTCTGGTCAGAGCTCCTGCTGGGGCCCTGGGGCCTGTCAGCTGAGCCCACACTTAAAGTTCCCATT-----------GAGA-CCCTAGCTAATGTTTTCGAGCCCAGTGTTCTTCGCCTCGTGTCCTTAGT---CCCACCAGACGGTTGGTTTGCTGCTGCCCAGACGGGGCCACCCTTGCTGCTTTTACCTCTCGTGGGCTGTTCCT i colAng1.NW_012118821v1 I 39 C 0 s otoGar3.GL873658 2561680 303 + 5252280 GTGCTCCTCGGCTCTCGGCTCCAGGTGGGCGGCAGAGGGCTGCAGAGGCACAACCCAGGG--AATATGCGGCCCTGA----------------------CCCTTG-CTCCTGCCACACACATAGCAGTCCTCGGCCTTCCTGAATTGTG---------GCTGCACCTG--------------TAGGGCCCAG-GACCTTTCAGGCGATCCTGCTCCTGCAGCCTACATTCTGCCTCCAAACCGGGTCCTAACTAATCT-----------------CCCACCTCCTATTCCCAGTCCACCCCCTGAGCGGTTGCTTTGCTGATGCCCAGACAAGGCCACATGTGGTGGCTTCACCCTGCTT--ATTCTTCCT i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I a score=643764.000000 s hg38.chr2_KI270769v1_alt 77642 137 + 120616 gctgctcagaactcccttctctttctgcttgtgcaaaccctgcccattcttgagggctcactggaaggacttctctaaagtc-----accccagccctctcagcaagctctcccttccctcttccccaaggcatctaCGGGG- s panTro5.chr2A 3539453 137 + 111504155 ggtgctcagaactcccttctctttctgcttgtgcaaaccctgcccattcttgagggctcactggaaggacttctgtaaagtc-----accccagccctctcagcaagctctcccttccctCTTCCCCAAGACATCTACGGGG- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3400200 137 + 114371477 ggtgctcagaactcccttctctttctgcttgtgcaaaccctgcccattcttgagggctcactggaaggacttctgtaaagtc-----accccagccctctcagCAAGCTCTCCCTTCCCTCTTCCCCAAGACATCTACGGGG- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 278028 137 + 637652 gctgctcagaactcccttctctttctgcttgtgcaaactctgcccattcttgagggctcactggaaggacttctctaaagtc-----accccagccctctcagcaagttctcccttccctcttccccaAGGCATCTACGGGG- i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3336847 136 + 108979918 gctgctcggaactccctttgctttctgcctgtgcaaaccctgttcgttcttcagagttcactggaaggacttctctcaagtc-----accccagctctctcagCAAACTCTCCCTTCCCTCTTTCCCAAGGCATCTACGGG-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5047985 134 - 111193037 GCTGCTCGGAACTCCCTTTGCTTTCTGCCTGTGCAAACCCTGTTCGTTCTTCAGAGTTCACTGGAAGGACTTCTCTCAAGTC-----ACCCCAG--CTCTCAGCAAACTCTCCCTTCCCTCTTCCCCAAGGCATCTACGGG-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3440651 136 + 3644372 GCTGCTCGGAACTCCCTTTGCTTTCTGCCTGTGCAAACCCTGTTCGTTCTTCAGAGTTCACTGGAAGGACTTCTCTCAAGTC-----ACCCCAGCTCTCTCAGCAAACTCTCCCTTCCCTCTTCCCCAAGGCATCTACGGG-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3395823 136 - 10304083 gctgctcagaactccctttgctttctgcctgtgcaaaccctgttcattcttgagagttcactggaaggacttctctaaagtc-----accccagctctctcagCAAACTCTCCCTTCCCTCTTCCCCAAGGCATCTACGGG-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3491745 136 - 107702431 GCTGCTCAGAACTCCCTTTGCTTTCTGTCTGTGCAAACCCTGTTTATTCTTGAGAGTTCACTGGAAGGACTTCTCTAAAGTC-----ACCCCAGCTCTCTCAGCAAACTCTCCCTTCCCTCTTCCCCAAGGCATCTACAGG-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1028707 136 + 1565135 gctgctcagaactccctttgctttctgcctgtgcaaaccctgttcattcttgagagttcactggaaggacttctccaaagtc-----accccagctctctcagCAAACTCTCCCTTCCCTCTTCCCCAAGGCATCTACGGG-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3393271 136 - 13651311 GCTGCTCAGAACTCCCTTTGCTTTCTGCCTGTGCAAACCCTGCTCATTCTTGAGAGTTCACCGGAAGGACTTCTCTAAAGTC-----ACCCCAGCTCTCTCAGCAAACTCTCCCTTCCCTCTTCCCCAAGGCATCTACGGG-- i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2561983 125 + 5252280 GCTGCTTGGAGCTTC--TCTCTCTCTGCCTGTGATACCTCTGCCATTTCCAGGG-----ATTGGTGAAGCCCCCTTAATATCCCCTGACCCTAGAGTCC--------CTCTCCTCTGCCTCTTCCT--GGGCACTCACTGG-G i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I e nomLeu3.chr19 3073993 100 + 81552678 M a score=286483.000000 s hg38.chr2_KI270769v1_alt 77779 48 + 120616 GATAA--AAGCACAGGGCTCaggagctggggtttggaacaagacagaccc- s panTro5.chr2A 3539590 48 + 111504155 GATAA--AAGCACAGGGCTCaggagctggggtttggaacaagacagaccc- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3400337 48 + 114371477 GATAA--AAGCACAGGGCTCAGGAGCTGGGGTTTGGAACAAGACAGACCC- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 278165 47 + 637652 GATAA--AAGCACAGGGCTCaggagctggggtttggaacaagacaga-cc- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3074093 46 + 81552678 GGTAA--AAGCACAAGGCTCAGGAGCTGGGG-TTGGAACAAGACAGA-CC- i nomLeu3.chr19 M 100 C 0 s rheMac8.chr13 3336983 47 + 108979918 GATAA--AAGCACAGGGCTCAGGAGCTGGGGTTTGGAACAAGACAGA-CC- i rheMac8.chr13 C 0 I 324 s macFas5.chr13 5048119 47 - 111193037 GATAA--AAGCACAGGGCTCAGGAGCTGGGGTTTGGAACCAGACAGA-CC- i macFas5.chr13 C 0 I 78 s macNem1.NW_012011978v1 3440787 47 + 3644372 GATAA--AAGCACAGGGCTCAGGAGCTGGGGTTTGGAACCAGACAGA-CC- i macNem1.NW_012011978v1 C 0 I 39 s cerAty1.NW_012000820v1 3395959 47 - 10304083 GATAA--AAGCACAGGGCTCAGGAGCTGGGGTTTGGAACCAGACAGA-CC- i cerAty1.NW_012000820v1 C 0 I 39 s chlSab2.chr14 3491881 47 - 107702431 GATAA--AAGCGCAGGGCTCAGGAGCTGGGGTTTGGAACAAGACAGA-CC- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1028843 47 + 1565135 GATAA--AAGCACAGGGCTCAGGAGCTGGGGTTTGGAACAAGACAGA-CC- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3393407 47 - 13651311 GAGAA--AAGCACAGGGCTCGGGAGCTGGGGTTTGGAACCAGACAGA-CC- i colAng1.NW_012118821v1 C 0 I 39 s otoGar3.GL873658 2562108 49 + 5252280 -GTGAGTGTGCACAGGGCCCAGGAGCTGGGGTTTGCCGTAGGACAGA-CCC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I a score=112250.000000 s hg38.chr2_KI270769v1_alt 77827 29 + 120616 cgaccc-------------------------------------------------tggtccagctgctcag--gctggcg s panTro5.chr2A 3539638 29 + 111504155 cgaccc-------------------------------------------------tggcccagctgctcag--gctggtg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3400385 29 + 114371477 CGACCC-------------------------------------------------TGGCCCAGCTGCTCAG--GCTGGCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 278212 29 + 637652 cgaccc-------------------------------------------------tggcccagctgctcag--gctggtg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3074139 29 + 81552678 CAACCC-------------------------------------------------TGGTTCAGCTGCTCAG--GCTGGCA i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5048244 29 - 111193037 CGACCC-------------------------------------------------CGGCTCGGCGGCTCAG--GCTGGCG i macFas5.chr13 I 78 I 22 s macNem1.NW_012011978v1 3440873 29 + 3644372 CGACCC-------------------------------------------------TGGCTCGGCGGCTCAG--GCTGGCG i macNem1.NW_012011978v1 I 39 I 22 s cerAty1.NW_012000820v1 3396045 29 - 10304083 CGACCC-------------------------------------------------CGGCTCGGCGGCTCAG--GCTGGCG i cerAty1.NW_012000820v1 I 39 I 61 s chlSab2.chr14 3491928 78 - 107702431 CGACCCCAGCTCGGCGGCTCAGGAGCTGGGGTTTGGAACAAGACAGACCCGACCACGGCTCGGCGGCTCAG--GCTGGCG i chlSab2.chr14 C 0 I 22 s manLeu1.NW_012104432v1 1028890 29 + 1565135 CGACCC-------------------------------------------------CGGCTCGGCGGCTCAG--GCTGGCA i manLeu1.NW_012104432v1 C 0 I 22 s colAng1.NW_012118821v1 3393493 29 - 13651311 CGACCC-------------------------------------------------CGGCTCAGCGGCTCAG--GCTGGCG i colAng1.NW_012118821v1 I 39 I 33 s otoGar3.GL873658 2562157 27 + 5252280 CAGCCC-------------------------------------------------TGGCTCAGCC-CTCGGACACTG--- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I e rheMac8.chr13 3337030 324 + 108979918 I a score=2816568.000000 s hg38.chr2_KI270769v1_alt 77856 528 + 120616 tggctctgagcagtttatctcacctt-catggtgtcagt---ccccccat-ACAACCGCCTGCCGTGAGCAGTCATCATCGTCGTGTGTAGATGATAAAGTTTATCCATGTGAAATCCTCTGTGTCCTGCCTGGGACATGCCAGGAGCGCTGTAAGCG-TAACTTGCTGTCTTTCCTATGTCTTGAGGATGGGTTG-TGTTTGTTCCG-TTCCTCACAGATCCAAGTGTAAGGGCGGCATT-CCCAGGTCTCAGCAAAAGTAC------GTGT-GCTCAGAATTGCCCTTGGAAGCCCCACTCCCACGGCGGGGCAGCCACCCCATAGAGTGACTCCAGTGCACACGTGGGCACGAGGCCCTCCAGGATGGGCTGTAGGAAGGGGCAAAAGCCGTGTCCCCACGCACGTATCCGGACACTCACACCCCACGCGCCAGCCTCAGAGCTCCTG-CTGGCGCACCCTGCTCACCCCCAATGCCGCATCTCAGCACGGGATGGAGG----------ACGCCACACGGAGTCAGATTGCAGTCGATGAGAGGTCAGTGGT s panTro5.chr2A 3539667 526 + 111504155 tggctctgagcagtttatctcacctt-cacggtgtcagt---ccccccaccACAACCGCCTGCCGTGAGCAGTCATC---GTCGTGTGTAGATGATAAAGTTTATCCATGTGAAATCCTCTGTGTCCTGCCTGGGACATGCCAGGAGCGCTGTAAGCG-TAACTTGCTGTCTTTCCTATGTCTTGAGGATGGGGTG-TGTTTGTTCCA-TTCCTCACAGATCCAAGTGTAAGGGCGGCATT-CCCAGGTCTCAGCAAAAGTAC------GTGT-GCTCAGAATTGCCCTTGGTAGCCCCACTCCCACGGCGGGGCAGCCACCCCATAGAGTGACTCCAGTGCACACGTGGGCACGAGGCCCTCCAGGATGGGCTGTAGGAAGGGGCAAAAGCAGTGTCCCCACGCACGTGTCCGGACACTCACACCCCACGCACCAGCCTCAGAGCTCCTG-CCGGCGCACCCTGCTCACCCCCAATGCTGCATCTCAGCACGGGATGGAGG----------ACGCCACACGGAGTCAGATGGCAGTCGATGAGAGGTCAGTGGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3400414 526 + 114371477 TGGCTCTGAGCAGTTTATCTCACCTT-CACGGTGTCAGT---CCCCCCACCACAACCGCCTGCCGTGAGCAGTCATC---GTCGTGTGTAGATGATAAAGTTTATCCATGTGAAATCCTCTGTGTCCTGCCTGGGACATGCCAGGAGCGCTGTAAGCG-TAACTTGCTGTCTTTCCTATGTCTTGAGGATGGGGTG-TGTTTGTTCCA-TTCCTCACAGATCCAAGTGTAAGGGCGGCATT-CCCAGGTCTCAGCAAAAGTAC------GTGT-GCTCAGAATTGCCCTTGGTAGCCCCACTCCCACGGCGGGGCAGCCACCCCATAGAGTGACTCCAGTGCACACGTGGGCACGAGGCCCTCCAGGATGGGCTGTAGGAAGGGGCAAAAGCAGTGTCCCCACGCACGTGTCCGGACACTCACACCCCACGCACCAGCCTCAGAGCTCCTG-CCGGCGCACCCTGCTCACCCCCAATGCTGCATCTCAGCACGGGATGGAGG----------ACGCCACACGGAGTCAGATTGCAGTCGATGAGAGGTCAGTGGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 278241 529 + 637652 tggctctgagcagtttatctcacctt-catggtgtcagt---ccccccaccACAACCGCCTGCCGTGAGCAGTCATCGTCGTCGTGTGTAGATGATAAAGTTTATCCATGTGAAATCCTCTGTGTCCTGCCTGGGACATGCCAGGAGCGCTGTAAGCGTTAACTTGCTGTCTTTCCTATGTCTTGAGGATGGGGTG-TGTTTGTTCCG-TTCCTCACAGATCCAAGTGTAAGGGCGGCATT-CCCAGGTCTCAGCAAAAGTAC------GTGT-GCTCAGAATTGCCCTTGGAAGCCCCACTCCCACGGCGGGGCAGCCACCCCATAGAGTGACTCCAGTGCACACGTGGGCACGAGGCCCTCCAGGATGGGCTATAGGAAGGGGTAAAAGCCGTGTCCCCACGCACGTATCCGGACACTCATACCCCACGCGCCAGCCTCAGAGCTCCTG-CCGGTGCA-CCTGCTCACCCCCAATGCTGCATCTCAGCACGGGATGGAGG----------ACGCCACACAGAGTCAGATCGCGGTCATTGAGAGGTCAGTGGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3074168 537 + 81552678 TGGCTCTGAGCAGTTTGTCTCACCTT-CGTGGTGTCATT---CCCCCCACCACAACCGCCTGCCGTGAACAGTCATCATCGTCGTGTGTAGATGATTAAGTTTACCCGTGTGAAATCCTCCACGTCCGGCCTGGGACGTGCCAGGAGCGCTGTAAGCG-TAACTTGCTGTCTTTCCTATGTCTTGAGGATGGGGTG-TCTTTGTTCCGTTTCCTCACAGATCCAAGTGTAAGGGCGGCATT-CCCAGGTCACAGCAAAAGTAC------GCAT-GCTCAGAATTGCCCTTGGAAGCCCCACTCCCACGGCGGGGCGTCCACCCCATAAAGTGACTCCATTGCACACGTGGGCACGAGGCCCTCCAGGATGGGCTATAGGAAGGGGCAAAAGCAGTGTCCCCATGCACGTATCCGGACACTCATACCCCACGCGCCAGCCTCAGAGCTCCTG-CTGGTGCACCCTGCTCACCCCCAATGCTGCATCTCAGCAC---ATTGCGGCTCACCCCCAATGCCGCATGGAGTCAGATCGCGGTCGATGCGAGGTCAGTAGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3337354 532 + 108979918 TGGCTCTGAGCAGGTGGTTTCACCTT-CATGGTGTCGGTCCCCCCCCACCCACAACCGCCTGCGGTAAACAGTCGTCGTCGTCGTGTATAGAGGAGGAAGTTCATCCATGTGAAATCCTCTGTGTCCTGCCTGGGACGTGCCAGGAGCACTGTAAGTG-TGACTTGCTGTCTTTCGTATGTCTTGAGGATGGGGTG-TGTTTGTTCCATTTCCTCTCAGATCCAAGTGTAAGGGCGGCATT-CCCAGGTCACAGCAAAAGTGC------ATGT-GCTCAGAATTGCCCTTGGAGACCCCACTCCCACAGCGGGGCATCCACCCTGTAGAGTGACTCCAGGGCACACATGGGCACGAGGCCCTCCAGGGTGGGTAGTAGAAAGGGGCAAAAGCAGTGTCCCCACACACGCATCCGGACACTCAGACCCCACGCGCCAGCCTCAGAGCTCCTG-CCGGTGCACCCTACTCACCCCCAACGCTGCGTCTCAGCACAGGATGGAAG----------ATGCCACGTGGGGGCAGATCACGG-CGATGTGAGATCAGCAGT i rheMac8.chr13 I 324 C 0 s macFas5.chr13 5048295 532 - 111193037 TGGCTCTGAGCAGGTGGTTTCACCTT-CATGGTGTCGGTCCCCCCCCACCCACAACTGCCTGCGGTAAACAGTCGTCATCGTCGTGTGTAGAGGAGGAAGTTTATCCATGTGAAATCCTCTGTGTCCTGCCTGGGACGTGCCAGGAGCACTGTAAGTG-TGACTTGCTGTCTTTCATATATCTTGAGGATGGGGTG-TGTTTGTTCCATTTCCTCTCAGATCCAAGTGTAAGGGCGGCATT-CCCAGGTCACAGCAAAAGTGC------ATGT-GCTCAGAATTGCCCTTGGAGACCCCACTCCCACAGCGGGGCATCCACCCTGTAGAATGACTCCAGGGCACACATGGGCACGAGGCCCTCCAGGGTGGGTAGTAGGAAGGGGCAAAAGCAGTGTCCCCACACACGCATCCAGACACTCAGACCCCACGCGCCAGCCTCAGAGCTCCTG-CCGGTGCACCCTACTCACCCCCAATGCTGCGTCTCAGCACAGGATGGAAG----------ATGCCACGTGGGGGCAGATCACGG-TGATGTGAGGTCAGCAGT i macFas5.chr13 I 22 C 0 s macNem1.NW_012011978v1 3440924 532 + 3644372 TGGCTCTGAGCAGGTGGTTTCACCTT-CATGGTGTCGGT-CCCCCCCACCCACAACTGCCTGCAGTAAACAGTCGTCATCGTCGTGTGTAGAGGAGGAAGTTTATCCATGTGAAATCCTCTGTGTCCTGCCTGGGACGTGCCAGGAGCACTGTAAGTG-TGACTTGCTGTCTTTCATATTTCTTGAGGATGGGGTG-TGTTTGTTCCATTTCCTCTCAGATCCAAGTGTAAGGGCGGCATT-CCCAGGTCACAGCAAAAGTGC------ATGT-GCTCAGAATTGCCCTTGGAGACCCCACTCCCACAGCGGGGCATCCACCCTGTAGAGTGACTCCAGGGCACACATGGGCACGAGGCCCTCCAGGGTGGGTAGTAGGAAGGGGCAAAAGCAGTGTCCCCACACACGCATCCAGACACTCAGATCCCACGCGCCAGCCTCAGAGCTCCTGCCCGGTGCACCCTACTCACCCCCAACGCTGCGTCTCAGCACAGGATGGAAG----------ATGCCACGTGGGGGCAGATCACGG-CGATGTGAGGTCAGCAGT i macNem1.NW_012011978v1 I 22 C 0 s cerAty1.NW_012000820v1 3396135 529 - 10304083 TGGCTCTGAGCAGGTTGTTTCACCTT-CATGGTGTCGGT-CCCCCCCCCCCACAACCGCCTGTGGTAAACAGTCGTCATCGTCACGTGTAGATGAGGAAGTTTATCCATGTGAAATCCTCTGTGTCCTGCCTGGGACGTGCCAGGAGCACTGTAAGTG-TGACTTGCTGTCTTTCGTATGTCTTGAGGATGGGGTG-TGTTTGTTCCGTTTCCTCACAGATCCAAGTGTAAGGGCGGCATT-CCCAGGTCACAGCAAAAGTGC------ATGT-GCTCAGAATTGCCCTTGGAAACCCCACTCCCACAGCGGGGCATCCACCCTGTAGAGTGACTCCAGGGCACACATGGGCACGAGGCCCTCCAGGCTAGGCAGTAGGAAGGGGCAAAAGCAGTGTCCCCACACACGCATCCAGACACTCAGACCCCACGCGCCAGCCTCAGAGCTCCTG-CTGGTGCACCCTACTCACCCCCAACGCT--GTCTCAGCACAGGATGGAAG----------ATGCCACGTGGGGGCAGATCACGG-CGATGTGAGGTCAGCAGT i cerAty1.NW_012000820v1 I 61 C 0 s chlSab2.chr14 3492028 526 - 107702431 TGGCTCTGAGCAGGTGGTTTCACCTT-CATGGTGTCGGT----CCCC-CCCACAACCGCCTGCGGTAAACAGTCGTCATCGTCGTGTGTAGAGGAGGAAGTTTATCCATGTGAAATCCTCTGTATCCTGCCTGGGACGTACCAGGACCACTGTAAGTG-TGACTTGCTGTCTTTCGTATATCTTGAGGAT-GGGTG-TGTTTGTTCCGTTTCCTCACAGATCTAAATGTAAGGGCGGCATT-CCCAGGTCACAGCAAAAGTGC------ATGT-GCTCAGAATTGCCCTTGGAGACCCCACTCCCACAGCGGGGCATCCACCCTGTAGAGTGACTCCAGGGCACACATGGGCATGAGGCCCTCCAGGCTGGGCAGTAGGAAGGGGCAAAAGCAGTGTCCCCACGCACGCATCAGGACACTCAGACCCCACGCGCCAGCCTCAGAGCTCCTG-CCGGTGCACCCTACTCACCCCCAACGCTGCGTCTCAGCACAGGATGGAAG----------ATGCCACGTGGGGGCAGATCACGG-CGATGTGAGGTCAGCAGT i chlSab2.chr14 I 22 C 0 s manLeu1.NW_012104432v1 1028941 527 + 1565135 TGGCTCTGAGCAGGTGGTTTCACCTT-CATGGTGTCGGT----CCCCACCCACAACCGCCTGCGGTAAACAGTCGTCATCGTCTTGTGTAGAGGAGGAAGTTTATCCATGTGATATCCTCTGTGTCCTGCCTGGGACGTGCCAGGAGCACTGTAAGTG-TGACTTGCTGTCTTTCGTATGTCTTGAGGATGGGGTGTTGTTTGTTCCGTTTCCTCACAGATCCAAGTGTAAGGGCGGCATT-CCCAGGTCACAGCAAAAGTGC------ATGT-GCTCAGAATTGCCCTTGGAAACCCCACTCCCACAGTGGGGCATCCACCCTGTAGAGTGACTCCAGGGCACACATGGGCACGAGGCCCTCCAGGCTGGGCAGTAGGAAGGGGCAAAAGCAGTGTCCCCACACACGCATCCAGACACTCAGACCCCACGCGCCAGCCTCAGAGCTCCTG-CCGCTGCACCCTACTCACCCCCAACGCT--GTCTCAGCACAGGATGGAAG----------ATGCCACGTGGGGGCAGATCACGG-CAATGTGAGGTCAGCAGT i manLeu1.NW_012104432v1 I 22 C 0 s colAng1.NW_012118821v1 3393555 527 - 13651311 tggctCTGAGCAGGTTGTTTCACCTT-CATGGTGTCGGC----CCCC-CCAACAACCGCCTGCGGTGAACAGTCGCCATCGTCGTGTGTAGATGAGGAAGTGTATCCGTGTGAAGCCCTCTGTGTCCTGCCTGGGATGTGCCAGGGGCACTGTAAGTG-TGACTTGCTGTCTTTCGTATGTCTTGAGGATGGGCTG-TGTTTGTTCCGTTTCCTCACAGATCCAAGCGTAAGGGCAGCATT-CCCAGGTCACAGCAGAAGTGC------ATGT-GCTCAGAATTGCCCTTGGAAACCCCACTCCCACAGCGGGGCATCCACCCTATAGAGTGACTCCAGGGCACACATGGGCACGAGGCCCTCCAGGCTGGGCAGTAGGAAGGGGCAAAAGCAGTGTCCCCACGCACGCATCCGGACACTCAGACCCCACGCGCCCGCCTCAGAGCTCCTG-CCAGTGCACCCTACTCACCCCCAACGCTGCATCTCAGCACAGGATGGAAG----------ATGCCACGTGGGGGCAGATCACGG-CGATGTGAGGTCAGCAGT i colAng1.NW_012118821v1 I 33 C 0 s otoGar3.GL873658 2562184 441 + 5252280 TGGCCCTGAGTAGGCTGTGTCACCTTGTACAGCATCGGG-----TCTGCCCACACCTGGCTATGGT----------CATCATCTTTGGAAGTTAAGTGAGCTACTATTTGTGAAATACTTTGTGTCGTGCCAGGGACATACAGGACCCACAG-----A-TGAC--------------AAGATTTAGGAAGAAAGTG-TGCTT----CA-CTCCT-----------GTGTAAGGCCTCCACTGTGTAGG---CAGCTGAGGGGCTGAGAGGCGTAGGTCAGGATTGCCCCC-CAAGCCCTGGCCACAATCTGGGTGTTCTGCCCTACAGAGCAGCACCAGAGCACACAGGGCCGTGAG--CCTCCCAGCCAGATGGCAGGCAGGAGCAAAGG-AACATCGGTGCTCACATGTCTGGAAAAACATAGCATGCCTGTCATC--------------CCAGAGCAGCCTGCACACCCCTGCTGC-ACCCCTCGGTACAGACAGACAG----------AC-----------------------CGGCTAGAGTT------- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 594380 3454 + 2232271 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I a score=761839.000000 s hg38.chr2_KI270769v1_alt 78384 127 + 120616 GCAGGACAAGATGGGGTTGAACGGGGACTCGAGTCCAGCAGAAACGCCTGAACTAAATGTAGACAGAATTGACTGCGCTCTGTTTTAAGGAGAAAGAACTCAAATGGAA-TGAACACGTAAAAGCCAG s panTro5.chr2A 3540193 125 + 111504155 GCAGGACAAGATGGGGTTGAACAGGGACTCG--TCCAGCAGAAACGCCTGAACTAAATGTAGACAGAATTGACTGCGCTCTGTTTTAAGGAGAAAGAACTCAAATGGAA-TGAACACGTAAAAGCCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3400940 125 + 114371477 GCAGGACAAGATGGGGTTGAACAGGGACTCG--TCCAGCAGAAATGCCTGAACTAAATGTAGACAGAATTGACTGCGCTCTGTTTTAAGGAGAAAGAACTCAAATGGAA-TGAACACGTAAAAGCCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 278770 127 + 637652 GCAGGACAAGATGGGGTTGAACGGGGACTCGAGTCCAGCAGAAACGCCTGAACTAAATGTAGACAGAATTGACTGTGCTCTGTTTTAAGGAGAAAGAACTCAAATGGAA-TGAACACGGAAAAGCCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3074705 126 + 81552678 GCAGGACAAGATGGGGTTGAACTGGGACTCGAGTCCAGCAGAAACGCCTGAACTAAATGTAGACAGAATTGACTCCGCTCTGTTTTAAGGAGTAAGAACTCAAACGGAA-TGAAC-CGTAAAAGCCAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3337886 127 + 108979918 GCAGGACAGGATGGGGTTGAACTGGGACTCGAGTCCAGCAGAAACGCCTGAACTAAATGTAGATAGAGTTGACTCCACTCTGTTTTAAGGAGTAAGAACTCGAATTGAG-TGACCACGTAAAAGCCAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5048827 127 - 111193037 GCAGGACAGGATGGGGTTGAACTGGGACTCGAGTCCAGCAGAAACGCCTGAACTAAATGTAGATAGAGTTGACTCCACTCTGTTTTAAGGAGTAAGAACTCGAATTGAG-TGACCACGTAAAAGCCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3441456 127 + 3644372 GCAGGACAGGATGGGGTTGAACTGGGACTCGAGTCCAGCAGAAACGCCTGAACTAAATGTAGATAGAGTTGACTCCACTCTGTTTTAAGGAGTAAGAACTCGAATTGAG-TGACCACGTAAAAGCCAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3396664 127 - 10304083 GCAGGACAGGATGGGGTTGAATGGGGACTCGAGTCCAGCAGAAACGCCTGAACTAAATGTAGATAGAGTTGACTCTACTCTGTTTTAAGGAGTAAGAACTCAAATTGAG-TGACCACGTAAAAGCCAG i cerAty1.NW_012000820v1 C 0 I 193 s chlSab2.chr14 3492554 127 - 107702431 GCAGGACAGGATGGGGTTGAACTGGGACTCGAGTCCAGCAGAAACGCCTGAACTAAATGTAGATAGAGTTGACTCCACTCTGTTTTAAGGAGTAAGAACTCGAATTGAG-TGACCACGTAAAAGCCAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1029468 127 + 1565135 GCAGGACAGGATGGGGTTGAACGGGGACTCGAGTCCAGCAGAAACGCCTGAACTAAATGTAGATAGAGTTGACTCTACTCTGTTTTAAGGAGTAAGAACTCGAATTGAG-TGACCACGTAAAAGCCAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3394082 127 - 13651311 GCAGGACAGGATGGGGTTGAACTGGGACTCGAGTCCAGCAGAAACGCCTGAACTAACTGTAGATAGAGTTGACTCCACTCTGTTTTAAGGAGTAAGAACTCGAATTGAG-TGACCACATAAAAGCCAG i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2562625 77 + 5252280 --------GGGTGGGGTTGGGTG-----------CAAAAGGAAAACCCTCAGTGAAATGTAGGCGGGG------------------------------CTCAAATGGAG-CAAACACACAGACCCGA- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 597834 123 + 2232271 GCAGGGCAGGATGGGATTG-----GGATTAGATTCTAAAGGAAACTCTTAAAATAACTGTACATAAAATAGACTCCACTGTATTTTAAGAAACAAGAACTCAAATTGAACTAACCTTCCAAAAACCAG i dasNov3.JH580157 I 3454 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I a score=97840.000000 s hg38.chr2_KI270769v1_alt 78511 24 + 120616 CAGAGAGCTC-TGTTCCGAAGGGAC s panTro5.chr2A 3540318 24 + 111504155 CAGAGAGCTC-TGTTCCGAAGGGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3401065 24 + 114371477 CAGAGAGCTC-TGTTCCAAAGGGAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 278897 24 + 637652 CAGAGAGCTC-TGTTCCGAAGGGAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3074831 24 + 81552678 TAAAGAGCTC-TGTTCCAAAGGGAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3338013 23 + 108979918 -TGCAGGCTC-TGTTCCGAAGGGAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5048954 23 - 111193037 -TGCAGGCTC-TGTTCCGAAGGGAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3441583 23 + 3644372 -TGCAGGCTC-TGTTCCGAAGGGAC i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3492681 23 - 107702431 -TGGAGGCTC-TGTTCCGAAGGGAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1029595 23 + 1565135 -TGCAGGCTC-TGTTCCAAAGGGAC i manLeu1.NW_012104432v1 C 0 I 135 s colAng1.NW_012118821v1 3394209 23 - 13651311 -TGCAGGCTC-TGTTCCGAAGGGAC i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2562702 24 + 5252280 CACAAAGCAT-TGCTCTGGAGGCCA i otoGar3.GL873658 C 0 I 1 s dasNov3.JH580157 597957 25 + 2232271 TACAAAGCTTAAAATTTAAAGGCAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I e cerAty1.NW_012000820v1 3396791 193 - 10304083 I a score=4190.000000 s hg38.chr2_KI270769v1_alt 78535 1 + 120616 G s panTro5.chr2A 3540342 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3401089 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 278921 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3074855 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3338036 1 + 108979918 G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5048977 1 - 111193037 G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3441606 1 + 3644372 G i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3492704 1 - 107702431 G i chlSab2.chr14 C 0 I 6871 s colAng1.NW_012118821v1 3394232 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 597982 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e otoGar3.GL873658 2562726 1 + 5252280 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I e manLeu1.NW_012104432v1 1029618 135 + 1565135 I e cerAty1.NW_012000820v1 3396791 193 - 10304083 I a score=1435.000000 s hg38.chr2_KI270769v1_alt 78536 1 + 120616 T s panTro5.chr2A 3540343 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3401090 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 278922 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3074856 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3338037 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5048978 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3441607 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s colAng1.NW_012118821v1 3394233 1 - 13651311 C i colAng1.NW_012118821v1 C 0 I 28 s otoGar3.GL873658 2562727 1 + 5252280 C i otoGar3.GL873658 I 1 I 1 s dasNov3.JH580157 597983 1 + 2232271 T i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I e manLeu1.NW_012104432v1 1029618 135 + 1565135 I e chlSab2.chr14 3492705 6871 - 107702431 I e cerAty1.NW_012000820v1 3396791 193 - 10304083 I a score=1107.000000 s hg38.chr2_KI270769v1_alt 78537 1 + 120616 A s panTro5.chr2A 3540344 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3401091 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 278923 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3074857 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3338038 1 + 108979918 G i rheMac8.chr13 C 0 I 60 s macFas5.chr13 5048979 1 - 111193037 G i macFas5.chr13 C 0 I 34 s macNem1.NW_012011978v1 3441608 1 + 3644372 G i macNem1.NW_012011978v1 C 0 I 94 s dasNov3.JH580157 597984 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e otoGar3.GL873658 2562728 1 + 5252280 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I e colAng1.NW_012118821v1 3394234 28 - 13651311 I e manLeu1.NW_012104432v1 1029618 135 + 1565135 I e chlSab2.chr14 3492705 6871 - 107702431 I e cerAty1.NW_012000820v1 3396791 193 - 10304083 I a score=35545.000000 s hg38.chr2_KI270769v1_alt 78538 24 + 120616 GCGCTCAATGCCTACTTTAAACTC s panTro5.chr2A 3540345 24 + 111504155 GCGCTCAATGCGTACTTTAAACTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3401092 24 + 114371477 GCGCTCAATGCGTACTTTAAACTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 278924 24 + 637652 GCGCTCAATGCCTACTTTAAACTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3074858 24 + 81552678 GCGCTCAATGCGTACTTTAAACTC i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5049014 24 - 111193037 GCACTGAGTGAGCACTTTACACTC i macFas5.chr13 I 34 I 1 s otoGar3.GL873658 2562729 23 + 5252280 GCGCAGGA-GAGCACTCTGAACTC i otoGar3.GL873658 I 1 C 0 s dasNov3.JH580157 597985 24 + 2232271 GCTTTAAATATGTACTTTAAAACT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I e colAng1.NW_012118821v1 3394234 28 - 13651311 I e manLeu1.NW_012104432v1 1029618 135 + 1565135 I e chlSab2.chr14 3492705 6871 - 107702431 I e cerAty1.NW_012000820v1 3396791 193 - 10304083 I e macNem1.NW_012011978v1 3441609 94 + 3644372 I e rheMac8.chr13 3338039 60 + 108979918 I a score=2300.000000 s hg38.chr2_KI270769v1_alt 78562 1 + 120616 A s panTro5.chr2A 3540369 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3401116 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 278948 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3074882 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5049039 1 - 111193037 A i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3441703 1 + 3644372 A i macNem1.NW_012011978v1 I 94 C 0 s otoGar3.GL873658 2562752 1 + 5252280 A i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 598009 1 + 2232271 G i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I e colAng1.NW_012118821v1 3394234 28 - 13651311 I e manLeu1.NW_012104432v1 1029618 135 + 1565135 I e chlSab2.chr14 3492705 6871 - 107702431 I e cerAty1.NW_012000820v1 3396791 193 - 10304083 I e rheMac8.chr13 3338039 60 + 108979918 I a score=2998.000000 s hg38.chr2_KI270769v1_alt 78563 2 + 120616 GA s panTro5.chr2A 3540370 2 + 111504155 GA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3401117 2 + 114371477 GA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 278949 2 + 637652 GA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3074883 2 + 81552678 GA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3338099 2 + 108979918 GG i rheMac8.chr13 I 60 C 0 s macFas5.chr13 5049040 2 - 111193037 GG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3441704 2 + 3644372 GG i macNem1.NW_012011978v1 C 0 C 0 s otoGar3.GL873658 2562753 2 + 5252280 CA i otoGar3.GL873658 C 0 I 4 s dasNov3.JH580157 598010 2 + 2232271 AA i dasNov3.JH580157 C 0 I 5 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I e colAng1.NW_012118821v1 3394234 28 - 13651311 I e manLeu1.NW_012104432v1 1029618 135 + 1565135 I e chlSab2.chr14 3492705 6871 - 107702431 I e cerAty1.NW_012000820v1 3396791 193 - 10304083 I a score=1907974.000000 s hg38.chr2_KI270769v1_alt 78565 324 + 120616 GTGTTCAGCCACGGTTAGATTCTTGGAGAAACAGCCCTCAGAGAAGTCACTTTCAAGAAAGCACGTGTGTTTTCCAGCTCTTGCAGTGTTCTTCTCCCT----GAAGCACCTCATCAGTACCTGTA----TCTTAATTATACGGT-CTCTAAACT--GGCTGTGTGTGAGCCATTCTGAAATGAGTTGGTGCCACT--ACGGAAGCAAAGAAGTATCACATGCACTGTCAGCA-CCTGTGTGCTGTGCTGTCAG--------A-GGGGTAAATTTCATAAGAAATAC-GTATATTAGTAACTGTCCCTCAAATGGTAAAATAATACTGCAGGTGCTTAGAAA----GTACGG s panTro5.chr2A 3540372 326 + 111504155 GTGTTCAGCCACGGTTAGATTCTTGGAGGAACAGCCCTCAGAGAAGTCACTTTCAAGAAAGCACGTGTGTTTTCCAGCTCTTGCAGTGTTCTTCTCCCT----GAAGCACCTCATCAGTACCTGTA----TCTTAATTATACGGT-CTCTAAACT--GGCTGTGTGTGAGCCATTCTGAAATGAGTTGGTGCCACTGTACAGAAGCAAAGAAGTATCACATACACCGTCAGCA-CCTGTGTGCTGTGCTGTCAG--------A-GGGGTAAATTTCATAAGAAATAC-ATATATTAGTAACTGTCCCTCAAATGGTAAAATAATACTGCAGGTGCTTAGAAA----GTACGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3401119 326 + 114371477 GTGTTCAGCCACGGTTAGATTCTTGGAGGAACAGCCCTCAGAGAAGTCACTTTCAAGAAAGCACGTGTGTTTTCCAGCTCTTGCAGTGTTCTTCTCCCT----GAAGCACCTCATCAGTACCTGTA----TCTTAATTATACGGT-CTCTAAACT--GGCTGTGTGTGAGCCATTCTGAAATGAGTTGGTGCCACTGTACGGAAGCAAAGAAGTATCATATACACCGTCAGCA-CCTGTGTGCTGTGCTGTCAG--------A-GGGGTAAATTTCATAAGAAATAC-GTATATTAGTAACTGTCCCTCAAATGGTAAAATAATACTGCAGGTGCTTAGAAA----GTACGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 278951 326 + 637652 GTGTTCAGCCACGGTTAGATTCTTGGAGAAACAGCTCTCAGAGAAGTCACTTTCAAGAAAGCACGTGTGTTTTCCAGCTCTTGCAGTGTTCTTCTCCCT----GAAGCACCTCATCAGTACCTGTA----TCTTAATTATACGGT-CTCTAAACT--GGCTGTGTGTGAGCCATTCTGAAATGAGTTGGTGCCACTGTACGGAAGCAAAGAAGTATCACATGCACTGTCAGCA-CCTGTGTGCTGTGCTGTCAG--------A-GGGGTAAATTTCATAAGAAATAC-GTATATTAGTAACTGTCCCTCAAATGGTAAAATAATACTGCAGGTGCTTAGAAA----GTACGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3074885 318 + 81552678 GTGTTCAGCCATGGTTAGATTCTTGGAGGAACAGCCCTCAGAGAAGTCACTTTCAAGAAAGCACGTGTGTTTTCCAGCTCTTGCAATGTTCTTCTCCCT----GAAGCACCTCATCAGTACCTGTG----TCTTAATTATACGGT-CTCTAAACT--GGCTGTGTGTGAGCCATTCTGAAATGAGTTGGTGCCACTGTACAGAAGCAAAGAAGTATCACATACCCCGTCAGCA-CCTGTGTGCTGTGCTGTCAG--------A-GGGGTAAATTTCATAGGAAATAC-A--------TAACTGTCCCTCAAATGGTGAAATGATACTGAAGGTGCTTAGAAA----GTACGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3338101 324 + 108979918 GTGTTCAGTCGTGGTTCGATTCTTGGAGGAACAGCCCTCAGAGAA-TCACTTTCAAGAAAGCATGTGTGTTTTCCAGTTCCCGCAGTGCTGTTCTCCCT----GAAGCACCTCATCAGTACCTGTA----TC----TTAGACGGT-CTCTAAACT--GGCTGTGTGCGAGCCATTCTGAAATGAGTTGGTGCCACTGTACAGAAGCAAAGAAGTATCACATGCACTCTAAGCG-CCTGTGTGCTGTGCTGTCAGGATATCAGA-GGGGTACATTTCATAAGAAACGC-GTATACTAGTAACCGTTCCTCAAGTG-----ATAATACTGAAGGTGCTTAGAAA----GTACAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5049042 323 - 111193037 GTGTTCAGTCGTGGTTCGATTCTTGGAGGAACAGCCCTCAGAGAA-TCACTTTCAAGAAAGCATGTGTGTTTTCCAGTTCCCGCAGTGCTGTTCTCCCT----GAAGCACCTCATCAGTACCTGTA----TC----TTAGACGGT-CTCTAAACT--GGCTGTGTGCGAGCCATTCTGAAATGAGTTGGTGCCACTGTACAGAAGCAAAGAAGAATCACATGCACTCTCA-CG-CCTGTGTGCTGTGCTGTCAGGATATCAAA-GGGGTACATTTCATAAGAAACGC-GTATACTAGTAACCGTTCCTCAAGTG-----ATAATACTGAAGGTGCTTAGAAA----GTACAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3441706 327 + 3644372 GTGTTCAGTCGTGGTTCGATTCTTGGAGGAACAGCCCTCAGAGAA-TCACTTTCAAGAAAGCATGTGTGTTTTCCAGTTCCCGCAGTGCTGTTCTCCCT----GAAGCACCTCATCACTACCTGTA----TCTTAATTAGACGGT-CTCTAAACT--GGCTGTGTGCAAGCCATTCTGAAATGAGTTGGTGCCACTGTACAGAAGCAAAGAAGTATCACATGCACTCTCA-CG-CCTGTGTGCTGTGCTGTCAGGATATCAGA-GGGGTACATTTCATAAGAAACGC-GTATACTAGTAACCGTTCCTCAAGTG-----ATAATACTGAAGGTGCTTAGAAA----GTACAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3396984 333 - 10304083 GTGTTCAGCCGTGGTTCGATTCTTGGAGGAACAGCCCTCAGAGAA-TCACTTTCAAGAAAGCACGTGTGTTTTCCAGCTCCCGCAGTGCTGTTCTCCCT----GAAGCACCTCATCAGTACCTGTA----TCTTAATTAGACGGT-CTCTAAACT--GGCTGTGTGCGAGCCATTCTGAAATGAGTTGGTGCCACTATACAGAAGCAAAGAAGTATCACATGCACTCTCAGCG-CCTGTGTGCTGTGCTGTCAGGATATCAGA-GGGTTACATTTCATAAGAAACGC-GTATACTAGTAACCGTTCCTCAAGTGATAAAATAATACTGAAGGTGCTTAGAAA----GTACAG i cerAty1.NW_012000820v1 I 193 C 0 s chlSab2.chr14 3499576 336 - 107702431 GTGTTCAGCCGTGGTTCGATTCTTGGAGGAACAGCCCTCAGAGAA-TCACTTTCAAGAAAGCACGTGTGTTTTCCAGCTCCCGCAGTGCTGTTCTCCCT----GAAGCACCTCATCACTACCTGTA----TCTTAATTAGACGGT-CTCTAAACTGGGGCTGTGTGCGAGCCATTCTGAAATGAGTTGGTGCCACTGTACGGAAGCAAAGAAGTATCACATGCACTCTCAGCA-CCTGTGTGCTGTGCTGTCAGGATATCAGAGGGGGTACATTTCATAAGAAACGC-GTGTATTAGTAACCGTCCCTCAAGTAATAAAATAATACTGAAGGTGCTTAGAAA----GTACAG i chlSab2.chr14 I 6871 C 0 s manLeu1.NW_012104432v1 1029753 333 + 1565135 GTGTTCAGCCGTGGTTCGATTCTTGGAGGAACAGCCCTCAGAGAA-TCACTTTCAAGAAAGCACGTGTGTTTTCCAGCTCCCGCAGTGCTGTTCTCCCT----GAAGCACCTCATCAGTACCTGTA----TCTTAATTAGACGGT-CTCTAAACT--GGCTGTGTGCAAGCCATTCTGAAATGAGTTGGTGCCACTGTACAGAAGCAAAGAAGTATCACATGCACTCTCAGCG-CCTGTGTGCTGTGCTGTCAGGATATGAGA-GGGTTACATTTCATAAGAAACGC-GTATACTAGTAACCGTTCCTCAAGTGATAAAATAATACTGAAGGTGCTTAGAAA----GTACAG i manLeu1.NW_012104432v1 I 135 C 0 s colAng1.NW_012118821v1 3394262 332 - 13651311 GTGTTCAGCTGTGGTTCGATTCTTGGAGGAACAGCCCTCAGAGAA-TCACTTTGAAGAAAGCACATGTGTTTTCCAGCTCCCGCAGTGCTGTTCTCCCT----GAAGCACCTCATCAGTACCCGTA----TCTTAATTAGGCAGT-CTCTAAACT--GGCTGTGTGCGAGCCATTCTGAAATGAGTTGGTGCCA-TGTACAGAAGCAAAGAAGTATCACGTACGCTGTCAGCT-CCTGTGTGCTGTGCTGTCAGGATATCAGA-GGGGTACATTTCATAAGAAACGC-GTATATTAGTAACCGTCCCTCAAATGATAAAATCATACTGAAGGTGCTTAGAAA----GTACAG i colAng1.NW_012118821v1 I 28 C 0 s otoGar3.GL873658 2562759 292 + 5252280 GTG-TCAGGCATGGCTCAGGTCTCAAGAGAAAAGCCCTCAGATAAGTCACTGTC--------------------------------TGCTGCTC-CCTT----GGCACCTCCCGGCACACCCCGCG----CCCC-----TGCAGC-CTCTAGAAG--AGCTCAGTTTGGGCCACTCTG--ATGAGGCACTGGACCTATCCAAAAGCAAAGAAGTATCATGTGTACCACAAGTG--CTCTGTGTTCTGTTTTTAGGATCTTAGA-AGG-TAAATTTCATAAGAAATTTAGTGTATCAATAATCATCTCTCAAATGACAATGTAATAGTGAAGGAGCTggccag----gcgcgg i otoGar3.GL873658 I 4 I 275 s dasNov3.JH580157 598017 341 + 2232271 ACATGCAGTTATGCTTAGATCCTTGAAAGAAGCACCCCCAGATAAATTACTTTCAA-AATACATACG-GCTTTTCAGTTATCACAATATAATTCTCCCTTATCTAACTACCCCataaatatatatgatatttataattaaataatCCTCTACAGA--AGCTTAATTTGAGCCATTCTAAAATGACTTGACAC----GTGCAAAAACAAAGAAGTAATATATATGATGTATGTGTTTTGTGTGCTGTATTTTTAGAATATTAAA-AGAATAAA-TTCTTAAGAAATCA-ATATATTGGTAATCATCTCTCAAGTGGCCAAATAATATTGAAAGTGTTAATAAACAATGTGTGA i dasNov3.JH580157 I 5 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I a score=1929650.000000 s hg38.chr2_KI270769v1_alt 78889 358 + 120616 GACGAggttttggttgcag-----------------------------------tcagtgg----------------------------------------------------------------------------------aatccgcagtggctgctataagcag-----aaaaagtttattcacggacagtagtacagggaatcttcatgagggccc-agagacaggccattctagagccacaaagccagg---atgccgtagcacgtcacag--gcccctccagcaagaatagcactgccagctctgcctggcaTCTCAGAGTCTTGTCCCCACCCTGCAGACCCAGGTCCCC--------CACACGGCCTCCTGCTTCCGCTGCCTCCTCAGGCCATGTCACCTTATGTGCGTGCATCTCTCTGGGGGCCCAGGCTGCGGGGTTGCCCCTCCTGCAAGAG----TAGGAATGTAGGCCTCCTGGTTCCTCCT- s panTro5.chr2A 3540698 360 + 111504155 GATgaggttttgattgcag-----------------------------------tcagtgg----------------------------------------------------------------------------------aatccacagtggctgctataagcag-----aaaaagtttattcacggacagtagtacagggaatcttcatgagggccc-agagacaggccattctagagccacaaagccagg---atgccctagcacgtcacagaggcccctccagcaagaacagcactgccagctctgcctggcaTCTCAGAGTCTTGTCCCCACCCTGCAGACCCAGTTCCCC--------CACACGGCCTCCTGCTTCCGCTGCTTCCTCAGGCCATGTCACCTTACGTGCGTGCATCTCTCTGGGGGCCCAGGCCATGGGGTTGCCCCTCCTGCAAGAG----TAGGAATGTAGGCCTCCTGGTTCCTCCT- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3401445 360 + 114371477 GACgaggttttggttgcag-----------------------------------tcagtgg----------------------------------------------------------------------------------aatccacagtggctgctataagcag-----aaaaagtttattcacggacagtagtacagggaatcttcatgagggccc-agagacaggccattctagagccacaaagccagg---atgccctagcacgtcacagaggcccctccagcaagaacagcactgccagctctgcctggcaTCTCAGAGTCTTGTCCCCACCCTGCAGACCCAGTTCCCC--------CACACGGCCTCCTGCTTCTGCTGCTTCCTCAGGCCATGTCACCTTACGTGCGTGCATCTCTCTGGGGGCCCAGGCCGCGGGGTTGCCCCTCCTGCAAGAG----TAGGAATGTAGGCCTCCTGGTTCCTCCT- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 279277 358 + 637652 GACgaggttttggttgcag-----------------------------------tcagtgg----------------------------------------------------------------------------------aatccgcagtggctgctgtaagcag-----aaaaagtttattcacggacagtagtacagggaatcttcatgagggccc-agagacaggccattctagagccacaaagccagg---atgccctagcacgtcacag--gcccctccagcaagaacagcactgccagctctgcctggcaTCTCAGAGTCTTGTCCCCACCCTGCAGACCCAGTTCCCC--------CACACGGCCTCCTGCTTCCGCTGCTTCCTCAGGCCATGTCACCTTACGTGCGTGCATCTCTCTGGGGGCCCAGGCCGCGGGGTTGCCCCTCCTGCAAGAG----TAGGAATGTAGGCCTCCTGGTTCCTCCT- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3075203 360 + 81552678 GACGAggttctggttgcaa-----------------------------------tcagtgg----------------------------------------------------------------------------------aatcctcagtggccggtataagcag-----aaaaagtttattcacggacaatagtacagggaatcttcatgagggccc-agagacaggccattctagagccacaaagccagg---atgccctagcatgtcacagaggcccctccagcaagaacggcactgccagctctgcctggcaTCTCACAGTCTTGTCCCCACCCTGAAGACCCAGATCCCC--------CACACGGCCTCCTGCTTCCGCCGCTTCCTCAGGCCATGTCATCTTACGTGCATGCATCTGTCTGGGGGCCCAGGCCGCAGGGCTGCCCCTCCCGCAAGAG----TAGGGATGTGGGCCTGCTGGTTCCTCCT- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3338425 360 + 108979918 GACgaggttttggttgcag-----------------------------------tccgtgg----------------------------------------------------------------------------------aatccacagtggctggtataagcag-------aaagtttattcacggacagtagtacagggaatcttcatgagggccc-agagacaggccattctagggccacgaagccagg---atgccctagcatgtcacagaggcccctccagcaagaacagcactgccagctctgcctggcCTCTCAGAGTCTTGTCCCCACCCTGAAGACCCAGGTCCCCAGGTCCCTCACACGGCCTCCT------TCCACTTCCTCAGGCACCGTCATCTTACATGCATGCGTCTCTCTGGGGGCCCAGGCCGCGGGGGCGCCCGTCCTGCAAGAG----TAGGAATGCAGGCCTCCTGGGTCCTCCT- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5049365 360 - 111193037 GACgaggttttggttgcag-----------------------------------tccgtgg----------------------------------------------------------------------------------aatccacagtggctggtataagcag-------aaagtttattcacgaacagtagtacagggaatcttcatgagggccc-agagacaggccattctagggccacgaagccagg---atgccctagcatgtcacagaggcccctccagcaagaacagcactgccagctctgcctggcCTCTCAGAGTCTTGTCCCCACCCTGAAGACCCAGGTCCCCAGGTCCCTCACATGGCCTCCT------TCCACTTCCTCAGGCACCGTCATCTTACATGCATGCGTCTCTCTGGGGGCCCAGGCCGCGGGGGCGCCCGTCCTGCAAGAG----TAGGAATGCAGGCCTCCTGGGTCCTCCT- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3442033 360 + 3644372 GACgaggttttggttgcag-----------------------------------tccgtgg----------------------------------------------------------------------------------aatccacagtggctggtataagcag-------aaagtttattcacggacagtagtacagggaatcttcatgagggccc-agagacaggccattctagggccacgaagccagg---atgccctagcatgtcacagaggcccctccagcaagaacagcactgcCAGCTCTGCCTGGCCTCTCAGAGTATTGTCCCCACCCTGAAGACCCAGGTCCCCAGGTCCCTCACATGGCCTCCT------TCCACTTCCTCAGGCACCGTCATCTTACATGCATGCGTCTCTCTGGGGGCCCAGGCCGCGGGGGCGCCCGTCCTGCAAGAG----TAGGAATGCAGGCCTCCTGGGTCCTCCT- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3397317 360 - 10304083 GACGAGGTTTTGCTTGCAG-----------------------------------TCCGTgg----------------------------------------------------------------------------------aatccacagtggctagtataagcag-------aaagtttattcacggacagtaatacagggaatcttcatgagggccc-agagacaggccattctagggccacgaagccagg---atgccctagcatgtcacagaggcccctccagcaagaacagcactgccagctctgcctggcCTCTCAGAGTCTTGTCCCTACCCTGAAGACCCAGGTCCCCAGGTCCCTCACACGGCCTCCT------TCCACTTCCTCAGGCACCGTCATCTTACGTGCATGCGTCTCTCTGGGGGCCCAGGCCGCGGGGGCGCCCGTCCTGCAAGAG----TAGGAATGCAGGCCTCCTGGTTCCTGCT- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3499912 360 - 107702431 GACgaggttttggttgcag-----------------------------------tccgtgg----------------------------------------------------------------------------------aatccacagtggctggtataagcag-------aaagtttattcacagacagtaatacagggaatcttcatgagggccc-agagacaggccattctagggccacgaagccagg---atgccctagcacgtcgcagaggcccctccagcaagaacagcactgccagctctgcctggcCTCTCAGAGTCTTGTCCCCACCCTGAAGACCCAGGTCCCCAGGTCCCCCACACGGCCTCCT------TCCACTTCCTCAGGCACCGTCATCTTACGTGCGTGCGTCTCTCTGGGGGCCCAGGCCGTGGGGGCGCCCCTCCTGCAGGAG----TAGGAATGCAGGCCTCCTGGGTCCTCCT- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1030086 360 + 1565135 GACgaggttttggttgcag-----------------------------------tccgtgg----------------------------------------------------------------------------------aatccacagtggctggtataagcag-------aaagtttattcacagacagtaatacagggaatcttcatgagggccc-agagacaggccattctagggccacgaagccagg---atgccctagcatgtcacagaggcccctccagcaagaacagcactgccagctctgcctggcCTCTCAGAGTCTTGTCCCCACCCTGAAGACCCAGGTCCCCAGGTCCCTCACACGGCCTCCT------TCCACTTCCTCAGGCACCGTCATCTTACGTGCATGCGTCTCTCTGGGGGCCCAGGCCGCAGGGGCGCCCGTCCTGCAAGAG----TAGGGATGCAGGCCTCCTGGGTCCTCCT- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3394594 359 - 13651311 GACGAGGTTTTGGTTGCAG-----------------------------------TCCGTGG----------------------------------------------------------------------------------AACCCACAGTGGCTGGTAGAAGCAG-------AAAGTTTATTCACAGACAGTAGTACAGGGAATCTTCACGAGGGCCC-AGAGACAGGCCGTTCTAGGGCCAGGAAGCCAGG---ATGCCCTAGCACGTCGCAGAGGCCCCCCCAGGAAGAACAGCACTGCCAGCTCTGCCTGGCCTCTCGGAGTCTTGTCCCCACCCTGAAGACCCAGGTCCCCAGGTCCCCC-CACGGCCTCCT------TCCACTTCCTCAGGCACCATCGTCTTACGTGCGTGCGTCTCTCTGGGGGCCCAGGCCGCGGGGGCGCCCCTCCTGCAAGAG----TAGGAATGTAGGCCTCCTGGGTCCTCCC- i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 598358 357 + 2232271 -AACAGTTTTTGGTTGCAGATAACAGAATACACACTggggagatggggtatagctcagtggttgatcacctgctttgtataaacgaggtcccagattcattcgccagtatcgcctaaaaaaaGAAAAAGGAAAAAATAATAATAATATACACTGGCGAGTATAAGCAGAAAAAAAAGAGTTTATTGAAGAATAATCGTGCACAGAGGCTTTAGGAAGGCCAGGGAGTCAGATTCTTCTAAGACTAGGCCACTGGGAGAATGTTCCACCACATCACAGA------------------------------CCTGTCTAATTGGTTATAg----------------------------------------------------------------------------------ttaggtgaatgca-----------------------------ccctacctgcaagggcttctgggaatgcaagttttctggtttctacct i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91432089 453 - 120129022 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e otoGar3.GL873658 2563051 275 + 5252280 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I a score=5197008.000000 s hg38.chr2_KI270769v1_alt 79247 949 + 120616 TGAAAGGA-CCCCTGACA-------------GGTGGGAAATGGACAGAATCGGGGAAGGCAGGGC-CAGCAG---CAGTCATGAGCATCCCTTACAAATCACATTGTAACATCTGAAGTCATGTAACACAAAGCTAAACGCGCGT-GGAATAAGATTGATTTCGTTTCTCTGAGATT--AGTTTCTACTC-TTATGTGCATGGAGATACAAGGGAGGCTCGGCATTTTCTACAATCTTGAATGTTATCTCCAGAC-CAGG--GAGGATTTGGGTTT-CATCAGCATTGAAGG-----------------TGGGAGATGAGGTGGGCATCGCGTCGATGCTGAGTCTCGGGGAGAAAGCTAGGA-----AATGTCCCCAGCAGGTAGGGAAACGCTTGGCAAAGCACAAAGGCAGAGGGAC--CCACATAGCTGGGCCCA-TTCTGCTCACGCCCTGG----------------CACTACTGCAAGAACTGTGG---TTTTCCGGGTCAA---CC--C-TAGCGAGGAGGGAGCACAAGCAGAGCTTCTCTGCGGAGAAGGCAGATTTCCAGCTC-CTAAGAACACCCTGTTCCACAAGGAAGCTGACGTG----CCCCTCCCCAGGGACCCACGCC--AAAAG---GCCATTCTTCCAGGCCA-GCGTCCCAGGGCGCTGCTGTGCGTGGTTCGCAGCCCCGGCAAACGATG----GCCTGCACTGCGTGCTGTCCGCCCTGTTCCTGCTGGACTCT---CTGCACTGTGTCCTGATCACC--CTCTCAGCTGATAGTGGGCACTGCAGTG-TGAATCTTCTCATGGA-CAACAGACCAATC-----C-TGC-----CTCCACCAGTGCCGTCGCCAAATCAG------------TAACACA-GAGCAA------CCTCAA---ACATTTCTGAATGTTTAGGT--CATCTAAT-ACTTGGCAAAAGAGTGGGCCGAACACCTCCACCCTCAGCTTTCTCTTCTGTT--TGTGTGTGAGTGTGTGTAGCAGAGTCTGAGAAAGA------TACATACAGCCACCTTC----------------------------------------------CTTT----TCTGAGCTTGGGAA----AATTTG s panTro5.chr2A 3541058 949 + 111504155 TGAAAGGA-CCCCTGACA-------------GGTAGGAAATGCACAGAATCGGGGAAGGCAGGGC-CAGCAG---CAGTCATGAGCATCCCTTACAAATCACGTTGTAACATCTGAAGTCATGTAACACAAAGCTAAACACACAT-GGAATAAGATTGATTTCGTTTCTCTGAGATT--AGTTTCTACTC-TTATGTGCATGGAGATACAAGGGAGGCTCGGCATTTTCTATAATCTTGAATGCTATCTCCAGAC-CAGG--GAGGATTTGCGTTT-CATCAGCATTGAAGG-----------------TGGGAGATGAGGTGGGCATCGCGTCGATGCTGAGTCTCGAGGAGAAAGCTAGGA-----AATGTCCCCGGCAGGTAGGGAAATGCTTGGCAAAGCACAAAGGCAGAGGGAC--CCACATAGCTGGGCCCA-TTCTGCTCACGCCCTGG----------------CACTACTGCAAGAACTGTGG---TTTTCCGGGTCAG---CC--C-TAGCGAGGAGGGAGCACAAGCAGACCTTCTCTGCGGAGAAGGCAGATTTCCAGCTC-CTAAGAACGCCCTGATCCACAAGGAAGCTGACGTG----CCCCTCCCCAGGGACCCACGCC--AAAAG---GCCATTCTTCCAGGCCA-GCGTCCCAGGGCGCTGCTGTGCGTGGTTCGCAGCCCCGGCAAACGATG----GCCTGCACTGCGTGCTGTCCCCCCTGTTCCTGCTGGACTCT---CTGCACTGTGTCCTGATCACC--CTCTCAGCTGATAGTGGGCACTGCAGTG-TGAATCTTCCCATGGA-CAACAGACCAATC-----C-TGC-----CTCCACCGGTGCCGTCGCCAAATCGG------------TAACACA-GAGCAA------CCGCAA---ACGTTTCTGAATGTTTAGGT--CATCTAAT-ACTTGGCAAAAGAGTGGGCTGAACAACTCCACCCTCAGCTTTCTCTTCTGTT--TGTGTGTGAGTGTGTGTAGCAGAGTCTGAGAAAGA------TACATACAGCCACCTTC----------------------------------------------CTTT----TCTGAGCTTGGGAA----AATTTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3401805 951 + 114371477 TGAAAGGA-CCCCTGACA-------------GGTAGGAAATGGACAGAATCGGGGAAGGCAGGGC-CAGCAG---CAGTCATGAGCATCCCTTACAAATCACATTGTAACATCTGAAGTCATGTAACACAAAGCTAAACACACGT-GGAATAAGATTGATTTCGTTTCTCTGAGATT--AGTTTCTACTC-TTATGTGCATGGAGATACAAGGGAGGCTCGGCATTTTCTACAATCTTGAATGCTATCTCCAGAC-CAGG--GAGGATTTGCGTTT-CATCAGCATTGAAGG-----------------TGGGAGATGAGGTGGGCATCGCGTCGATGCTGAGTCTCGGGGAGAAAGCTAGGA-----AATGTCCCCGGCAGGTAGGGAAACGCTTGGCAAAGCACAAAGGCAGAGGGAC--CCACATAGCTGGGCCCA-TTCTGCTCACGCCCTGG----------------CACTACTGCAAGAACTGTGG---TTTTCCGGGTCAG---CC--C-TAGCGAGGAGGGAGCACAAGCAGACCTTCTCTGCGGAGAAGGCAGATTTCCAGCTC-CTAAGAACGCCCTGATCCACAAGGAAGCTGACGTG----CCCCTCCCCAGGGACCCACGCC--AAAAG---GCCATTCTTCCAGGCCA-GCATCCCAGGGCGCTGCTGTGCGTGGTTCGCAGCCCCGGCAAACGATG----GCCTGCACTGTGTGCTGTCCCCCCTGTTCCTGCTGGACTCT---CTGCACTGTGTCCTGATCACC--CTCTCAGCTGATAGTGGGCACTGCAGTG-TGAATCTTCCCATGGA-CAACAGACCAATC-----C-TAC-----CTCCACCAGTGCCGTCGCCAAATCAG------------TAACACA-GAGCAA------CCTCAA---ACGTTTCTGAATGTTTAGGT--CATCTAAT-ACTTGGCAAAAGAGTGGGCTGAACAACTCCACCCTCAGCTTTCTCTTCtgtttgtgtgtgtgtgtgtgtgtAGCAGAGTCTGAGAAAGA------TACATACAGCCACCTTC----------------------------------------------CTTT----TCTGAGCTTGGGAA----AATTTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 279635 946 + 637652 TGAAAGGACCCCCTGACA-------------GGTAGGAAATGGACAGAATCGGGGAAGGCAGGGC-CAGCAG---CAGTCATGAGCATCCCTTACAAATCACATTGTAACATCTGAAGTCATGTAACACAAAGCTAAACACGCGT-GGAATAAGATTGATTTCCTTTCTCTGAGATT--AGTTTCTACTC-TTATGTGCATGGAGATACAAGGGAGGCTCGGCATTTTCTACAATCTTGAATGTTATCTCCAGAC-CAGG--GAGGATTTGCGTTT-CATCAGCATTGAAGG-----------------TGGGAGATGAGGT-GGCATCGCGTCAATGCTGAGTCTCGGGGAGAAAGCTAGGA-----AATGTCCCCGGCAGGTAGGGAAACGCTTGGCAAAGCACAAAGGCAGAGGGAC--CCACATAGCTGGGCCCA-TTCTGCTCACGCCCTGG----------------CACTACTGCAAGAACTGTGG---TTTTCCGGGTCAG---CC--C-TAGCGAGGAGGGAGCACAAGCAGAGCTTCTCTGCGGAGAAGGCAGATTTCCAGTTC-CTAAGAATGCCCTGTTCCACAAGGAAGCTGACGTG----CCCCTCCCCAGGGACCCACGCC--AAAAG---GCCATTCTTCCAGGCCA-GCGTCCCAGGGCACTGCTGTGCGTGGTTTGCAGCCCCGGCAAACGATG----GCCTGCACTGCGTGCTGTCC-CCCTGTTCCTGCTGGACTCT---CTGCACTGTGTCCTGATCACC--CTCTCAGCTGATAGTGGGCACTGCAGTG-TGAATCTTCCCATGGA-CAACAGACCAATC-----C-TGC-----CTCCACCAGTGCCGTCGCCAAATCAG------------TA--ACA-GAGCAA------CCTCAA---ACGTTTCTGAATGTTTAGGT--CATCTAAT-ACTTGGCAAAAGAGTGGGCTGAACACCTCCACCCTCAGCTTTCTCTTCtgtt--tgtgtgtgtgtgtgtgtAGCAGAGTCTGAGAAAGA------TACATACAGCCACCTTC----------------------------------------------CTTT----TCTGAGCTTGGGAA----AATTTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3075563 947 + 81552678 TGAAAGGA-CCCCTGACA-------------GGCAGGAAATGGACAGAATCGGGGAAGGCAGGGC-CAGCAG---CAATCATGAGCATCCCTTACAAATCACGTTGTAACACCTGAAGTCATGTAACACAAAGCTAAACATGCGT-GGAATAAGATTGATTTCGTTTCCCTGAGATT--AGTTTCTACTC-TTTTGTGCATGGAAATACAAGGGAGGCTCGGCAATTTCTACAATCTTGAATGCTATCTCCAGAC-CAGG--GCGGATTTGCGTTT-CATCAGCATTGAAGG-----------------TGGGAGATGAGGTGGGCATCGCGTTGATGCTGAGTCTCGGGGAGAAAGCTAGGA-----AATGTCCCCGGCAGGTAGGGAAACGCTTGGCAAAGCACAAAGGCAGAGGGAC--CCGCGTAGCTGGGCCCA-TTCTGCTCACGCCCTGG----------------CACTACTGCGAGAACTGTGG---TTTTCCAGGTCAG---CC--CTTAGCGAGGAGGGAGCACAGGCAGAGCTTCTCCGTGGAGAAGGCAGATTTCCAGCTC-CTAAGAACGCCCTGTTCCACAAGGAAGCTGACGTG----CCCCTCCCCAGGGACCCACGCC--AAAAG---ACCGTTCTTCCAGGCCA-GCGTCCCAGAGTGCTGCTTTGCATGGTTCGCAGCCTTGGCAAATGATG----GCCTGCACTGCGTGCTGTCC-CCCCGTTCCTGCTGGA--CT---CTGCACTGTGTCCTGATCACC--CTCTCAGCTGATAGTGGGCACTGCAGTG-TGAATCTTCCCATGGA-AAACAGACCAATC-----C-TGC-----CTCCACCAGTGCCGTCGCCAAATCAG------------TAACACA-GAGCAA------CCTCAA---ACGTTTCTGAATGTTTAGGT--CATCTAAT-ACTTGGCAAAAGAGTGGGCTGAACACCTCCACCCTCAGCTCTCTCTTCTGTT--TGTGTGTGAGTGTGTGTAGCAGAGTCTGAGAAAGA------TACATACAGCCACCTTC----------------------------------------------CTTT----TCTGAGCTTGGGAA----AATTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3338785 978 + 108979918 TGAAAAGA-CCCCTAACA-------------GGTGGGAAATGGGCAGAATCAGGGAAGGCA--GC-CAGCAG---CAATCATGAGCGTTCCTTGCGAATCATGTTGTAACATCTGAAGTCATATA--ACAAAGCTAATCACGCGT-GGAATAAGACTGATTTCGTTTCCCTGAGATGAAAGTTTCTACTC--TATATGCTTGGAAATACAAGGGAGGCTCGGTATTTTCTGCAATCTTGAATGCGATCTCCAGAC-CAAG--GAGGATTTGTGTTT-CATCAGCACTGGAGG-----------------TTGGAGATGAGGTGTGTATCGCGTTGATGCTGGGTCTCGGGGAGAAAGCTAGGA-----AATGTCCCCAGCAGGTAGGGAAATGCTTGGCAAAGCACGAAGGCGGAGGGAC--CCACGTAGCTGGACCCA-TTCTGCTCATGCCCTGG----------------CACTGCTCCGAGAACTGTGG---TTTTCCAGATCAG---CC--C-TAGCAAGGAGGGAGCACAGGCAGAGCCGCTCCGTGGGGAAGGCAGATGTCAAGCTC-CTAAGAAGGACCTGTTCCACAA-GAAGCTGACGTG----CCCCTCCCCAGGGACCCGAGCC--GAAAG---GCCATTCTTCCAGGGCA-GCATCCCAGGGCACTGCTTTGTGTGGTTGGCATCCCCGGCAGATGATG----GCCTGCTCTGCGTGCTGTCCCCGCTGTTCCTGCTGGGCTGT---CTGCAGTGTGTCCTGATCACC--CTCTCAGCTGGCAGTGCGCACTGCAGTA-TGAATCTTCCCATGGA-AAGCTGACCAATC-----C-TGC-----CTCCACCGGTGCTGTCGCCAAATCAG------------TA--ACG-GAGCAA------CCTCAA---ACGTTTCTGAACGTTTAGGTCACATCTAAT-ACTTGGCGAAAGAGTGGGCTGAACACCTCCGCCCTCAGCT-----TTCTGTG--TGTGCGTGAGTGTGTATAGCAGAGTCTGAGAA--------------ACAGCCACTTTTCTCTCTGTGTGCGTGAGTGTGTATAGCAGAGTCTGAGAAACAGCCACTTT----TCTGAGTTTGGGAA----AATTTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5049725 983 - 111193037 TGAAAAGA-CCCCTAACA-------------GGTGGGAAATGGGCAGAATCAGGGAAGGCA--GC-CAGCAG---CAATCATGAGCGTTCCTTGCGAATCATGTTGTAACATCTGAAGTCATATA--ACAAAGCTAATCACGCGT-GGAATAAGACTGATTTCGTTTCCCTGAGATGAAAGTTTCTACTC--TATATGCTTGGAAATACAAGGGAGGCTCGGTATTTTCTGCAATCTTGAATGCGATCTCCAGAC-CAAG--GAGGATTTGTGTTT-CATCAGCACTGGAGG-----------------TTGGAGATGAGGTGTGCATCGCGTTGATGCTGGGTCTCGGGGAGAAAGCTAGGA-----AATGTCCCCAGCAGGTAGGGAAATGCTTGGCAAAGCACGAAGGCGGAGGGAC--CCACGTAGCTGGACCCA-TTCTGCTCATGCCCTGG----------------CACTGCTCCGAGAACTGTGG---TTTTCCAGATCAG---CC--C-TAGCAAGGAGGGAGCACAGGCAGAGCCGCTCCGTGGGGAAGGCAGATGTCAAGCTC-CTAAGAAGGACCTGTTCCACAA-GAAGCTGACGTG----CCCCTCCCCAGGGACCCGAGCC--GAAAG---GCCATTCTTCCAGGGCA-GCATCCCAGGGCACTGCTTTGTGTGGTTGGCATCCCCGGCAGATGATG----GCCTGCTCTGCATGCTGTCCCCGCTGTTCCTGCTGGGCTGT---CTGCAGTGTGTCCTGATCACC--CTCTCAGCTGGCAGTGCGCACTGCAGTG-TGAATCTTCCCATGGA-AAGCTGACCAATC-----C-TGC-----CTCCACCAGTGCCGTCGCCAAATCAG------------TA--ACG-GAGCAA------CCTCAA---ACGTCTCTGAACGTTTAGGTCACATCTAAT-ACTTGGCGAAAGAGTGGGCTGAACACCTCCGCCCTCAGCTTTCTGTTCTGTG--TGTGCGTGAGTGTGTATAGCAGAGTCTGAGAA--------------ACAGCCACTTTTCTTTCTGTGTGTGTGAGTGTGTATAGCAGAGTCTGAGAAACAGCCACTTT----TCTGAGTTTGGGAA----AATGTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3442393 931 + 3644372 TGAAAAGA-CCCCTAACA-------------GGTGGGAAATGGGCAGAATCAGGGAAGGCA--GC-CAGCAG---CAATCATGAGCGTTCCTTGCGAATCATGTTGTAACATCTGAAGTCATATA--ACAAAGCTAATCACGCGT-GGAATAAGACTGATTTCGTTTCCCTGAGATGAAAGTTTCTACTC--TATATGCTTGGAAATACAAGGGAGGCTCGGTATTTTCTGCAATCTTGAATGCCATCTCCAGAC-CAAG--GAGGATTTGTGTTT-CATCAGCACTGGAGG-----------------TTGGAGATGA-GTGTGCATCGCGTTGATGCTGGGTCTCGGGGAGAAAGCGAGGA-----AATGTCCCCAGCAGGTAGGGAAATGCTTGGCAAAGCACGAAGGCGGAGGGAC--CCACGTAGCTGGACCCA-TTCTGCTCATGCCCTGG----------------CACTGCTCCGAGAACTGTGG---TTTTCCAGATCAG---CC--C-TAGCAAGGAGGGAGCACAGGCAGAGCCGCTCCGTGGGGAAGGCAGATGTCAAGCTC-CTAAGAAGGACCTGTTCCACAA-GAAGCTGACGTG----CCCCTCCCCAGGGACCCGAGCC--GAAAG---GCCATTCTTCCAGGGCA-GCATCCCAGGGCACTGCTTTGTGTGGTTGGCATCCCCGGCAGATGATG----GCCTGCTCTGCGTGCTGTCCCCGCTGTTCCTGCTGGGCTGT---CTGCAGTGTGTCCTGATCACC--CTCTCAGCTGGCAGTGCGCACTGCAGTG-TGAATCTTCCCATGGA-AAGCTGACCAATC-----C-TGC-----CTCCACCGGTGCCGTCGCCAAATCAG------------TA--ACG-GAGCAA------CCTCAA---ACGTTTCTGAACGTTTAGGTCACATCTAAT-ACTTGGCGAAAGAGTGGGCTGAACGCCTCCGCCCTCAGCT-----TTCTGTG--TGTGCGTGAGTGTGTATAGCAGAGTCTGAGAA--------------ACAGCCACTTTT----------------------------------------------CTTT----TCTGAGTTTGGGGA----AATTTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3397677 939 - 10304083 TGTAAGGA-CCCCTAACA-------------GGTGGGAAATGGGCAGAATCGGGGAAGGCA--GC-CAGCAG---TAATCATGAGCGTTCCTTACGAATCATGTTGTAACATCTGAAGTCATATAACACAAAGCTAATCACGCGT-GGAATAAGACTGATTTCGTTTCCCTGAGATGAAAGTTTCTACTC--TATGTGCTTGGAAATACAAGGGAGGCTCGGTATTTTCTGCAATCTTGAATGCAATCTCCAGAC-CAAG--GAGGATTTGTGTTT-CATCAGCACTGAAGG-----------------TTGGAGATGAGGTGTGCATCACGTTGATGCTGTGTCTCTGGGAGAAAGCTAGGA-----AATGTCCCCAGCAGGTAGGGAAATGCTTGGCAAAGCACGAAGGCGGAGGGAC--CCACGTAGCTGGACCCA-TTCTGCTCATGCCCTGG----------------CACTGGTCCGAGAACTGTGG---TTTTCCAGATCAG---CC--C-TAGCAAGGAGGGAGCACAGGCAGAGCCGCTCCGTGGGGAAGGCAGATGTCAAGCTC-CTAAGAACGACCTGTTCCACAA-GAAGCTGACGTG----CCCCTCCCCAGGGACCCGAGCC--GAAAG---GCCATTCTTCCAGGGCA-GCGTCCCAGGGCGCTGCTTTGTGTGGTTGGCATCCCCGGCAGATGGTG----GCCTGCTCTGCGTGCTGTCCCCGCTGTTCCTGCTGGGCTGT---CTGCAGTGTGTCCTGATCACC--CTCTCAGCTGGCAGTGCGCACTGCAGTG-TGAATCTTCCCATGGA-AAGCCGACCAATC-----C-TGC-----CTCCACCGGTGCCGTCGCCAAATCAG------------TA--ACG-GAGCAA------CCTCAA---ACGTTTCTGAACGTTTAGGTCACATCTAAT-ACTTGGCGAAAGAGCGGGCTGAACACCTCCGCCCTCAGCTTTCTGTTCTGTG--TGTGCGTGAGTGTGTATAGCAGAGTCTGAGAA--------------ACAGCCACTTTT----------------------------------------------CTTT----TCTGAGTTTGGGAA----AATTTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3500272 935 - 107702431 TGAAAGGA-CCCCTAACA-------------GGTGGGAAATGGGCAGAATCGGGGAAGGCA--GC-CAGCAG---CAATCATGAGCGTTCCTTACGAATCATGTTGTAACATCTGAAGTCATAGAACACAAAGCTAATCACGCGT-GGAATAAGACTGATTTCGTTTCCCTGAGATGAAAGTTTCTACTC----TGTGCTTGGAAATACAAGGGAGGCTCGGTATTTTCTGCAGTCTTGAATGCGATCTCCAGAC-CAAG--GAGGATTTGTGTTT-CATCAGCACTGAAGG-----------------TTGGAGATGAGGTATGCATCGCATTGATGCTGGGTCCCGGGGAGAAAGCTAGGA-----AATGTCCCCAGCAGGTAGGGAAACGCTTGGCAAAGCACGAAGGCAGAGGGAC--CCACGTACCCGGGCCCA-TTCTGCTCATGCCCTGG----------------CACTGCTCCGAGAACTGTGG---TTTTCCAGATCAG---CC--C-TAGCAAGGAGGGAGCACAGGCAGAGCCGCTCCGTGGGGAAGGCAGATGTCAGGCTC-CTAAGAATGACCTGTTCCACAA-GAAGCTGACGTG----CCCCTCCCCAGGGACCCGAGCT--GAAAG---GCCATTCTTCCAGGGCA-GTGTCCCAGGGCGCTGCTTTGTGTGGTTGGCAACCCTGGCAGATGATG----GCCTGCTCTGCGTGCTGTCCCCGCTGTTCCTGCTGGGCTGT---CTGCAGTGTGTCCTGATCACC--CTCTCAGCTGGCAGTGCGCACTGCAGTG-TGAATCTTCCCATGGA-AAGCAGACCAGTC-----C-TGC-----CTCCACCGGTGCCGTCGCCAAATCAG------------TA--ACA-GAGCAA------CCTCAA---ACGTTTCTGAATGTTTAGGT--CATCTAAT-ACTTGGCAAAAGAGTGGGCTGAACACCTCCGCCCTCAGCTTTCTGTGCTGTG--TGTGCATGAGTGTGTATAGCAGAGTCTGAGAA--------------ACAGCCACTTTT----------------------------------------------CTTT----TCTGAGTTTGGGAA----AATTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1030446 936 + 1565135 TGAAAGGA-CCCCTAACA-------------GGTGGGAAATGGGCAGAATCGGGGAAGGCA--GC-CAGCAG---CAATCATGAGCGTTCCTTACGAATCATGTTGTAACATCTGAAGTCATATAACACAAAGCTAATCACGCAT-GGAATAAGACTGATTTCGTTTCCCTGAGATGAAAGTTTCTACCC--TATGTGCTTGGAAATACAAGGGAGGCTCGGTATTTTCTGCAATCTTGAATGCAATCTCCAGAC-CAAG--GAGGATTTGTGTTT-CATCAGCACTGAAGG-----------------TTGGAGATGAGGTGTGCATCGCGTTGATGCTGGGTCTCGGGGAGAAAGCTAGGA-----AATGTCCCCAGCAGGTAGGGAAATGCTTGGCAAAGCACGAAGGCGGAGGGAC--CCACGTAGCTGGACCCA-TTCTGCTCATGCCCTGG----------------CACTGCTCCGAGAACTGTGG---TTTTCCAGATCAG---CC--C-TAGCAAGGAGGGAACACAGGCAGAGCCGCTCCATGGGGAAGGCAGATGTCAAGCTC-CTAAGAACGACCTGTTCCACAA-GAAGCTGACGTG----CCCCTCCCCAGGGACCCGAGCC--GAAAG---GCTGTTCTTCCAGGGCA-GCGTCCCAGGGCGCTGTTTTGTGTGGTTGGCATCCCTGGCAGATGATG----GCCTGCTCTGCGTGCTGTCCCCGCTGTTCCTGCTGGGCTGT---CTGCAGTGTGTCCTGATCACC--CTCTCAGCTGGCAGTGCGCACTGCAGTG-TGAATCTTCCCATGGA-AAGCCGACCAATC-----C-TGC-----CTCCACCGGTGCCGTCGCCAAATCAG------------TA--AC--GAGCAA------CCTCAA---ACGTTTCTGAACGTTTAGGT--CATCTAAT-ACTTGGCAAAAGAGTGGGCTGAACACCTCCGCCCTCAGCTTTCTGTTCTGTG--TGTGCGTGAGTGTGTATAGCAGAGTCTGAGAA--------------ACAGCCACTTTT----------------------------------------------CTTT----TCTGAGTTTGGGAA----AATTTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3394953 940 - 13651311 TGAAAGGA-CCCCTAACA-------------GGTGGGCAATGGGCAGAATCGGGGAAGGCA--GC-CAGCAG---CAACCATGAGCGTCCCTTACGAATCATGTTGTAACATCTGAAGTCATATAACACAAAGCTAATCACGCAC-GGAATAAGACTGATTTGGTTTCCCTGAGATTAAAGTTTCTCCTC--TATGTGCGTGGAAAAACAAGGGAGGCTCGGTATTTTCTGCAATCTTGAATGCTATCTCCAGAC-CAAG--GAGGATTTGTGTTT-CATCAGCACTGAAGG-----------------TTGGAGATGAGGTGTGCATCGCGTTGATGCTGGGTCTCGAGGAGAAAGCTAGGA-----AAGGTCCCCGGCAGGTAGGGAAACGCTTGGCAAAGCACGAAGGTGGAGGGAC--CCACATAGCTGGGCCCA-CTCTGCCCATGCCCTGG----------------CCCTGCTCCGAGAACTGTCG---TTTTCCAGATCAG---CC--C-TAGCAAGGAGGGAGCACAGGCAGGGCCGCTCCGTGGGGAAGGCAGACGTCAAGCTC-CTAAGAACGACCTGTTCCACAAGGAAGCTGACGTG----CCCGCCCC--AGGACCCGAGCC--GAAAG---GCCGTTCTTCCAGGGCA-GCGTCCCAGGGCGCTGCTTTGTGTGGTTGGCAACCCCGGCAGATGATG----GCCTGCTCTGCGTGCCGTCCCCGCTGTTCCTGCTGGGCTGT---CTGCAGTGTGTCCTGATCACC--CTCTCAGCTGGCAGTGCGCACTGCAGCG-TGAATCTTCCCGTGAA-AAGCAGACCAATC-----C-TGC-----CCCCACCGGTGCCGTCGCCAAATCAG------------TA--ACA-GAGCAA------CCTCAA---ACGTTTCTGAATGTTTAGGT--CATCTAATAACTTGGCAAAAGAGTGGGCTGAACACCTCCGCCCTCAGCTTTCTGTTCTGTG--TGTGCATGAGTGTGTATAGCAGAGTCTGAGAA----------------AGACACGTAT-----------------------------------------AGCCACTTT----TCTGAGTTTGGGAA----AATTTA i colAng1.NW_012118821v1 C 0 C 0 s mm10.chr12 91432542 841 - 120129022 TGAAAGTA-CTTGTGCAG-------------AGTGGGGAATCTG-ATATTTGGGGGGGGGGGGGCACAGTGGCCCCAAGGATAAGTGTCCCTCA---------TTTCCACAGTGAAAGCCACATGACATAAGG-----AATGCTTAGGGACGCGACTGGCTTC--TTCACTGAGCTGGAGCTGTTTGCTG-TTGAGTGTATGGGAAGACAATGAAGA--GGGTGCCTGGCTCCATCCTGAATGGGATCCCAAGTC-AGAG--GAGGCCCC-TGGCT-CATTGGTTTTGAAAG----------------CCTGGGGCTGATACAGGC-------CAGTGCTGA-CCCCGGGAGCAAAG--AGGAGTAGTAGTGTCCTTAGTAGCCAGAGAAA----GGGCACAAAACAAGGGAAGGAGGTTTGCTGTGTAG-TGGGGCTG-GGCTGTTCAGCCGAGAG----------------GAATGCTA-GAGGCCCATG------CTCCATCTCAGGGTCC--A-ATGCAAAGGAGAGGTACAG-----------------------------------TC-CTTGGGACATATTGCTCCAAACAAGAGATATAGTA----TCTGGGCCAAGGAATCGGAGCC--CAAAGAAAGCAGATCTTCAAGGCCA-AGATTCCTGGGCACCGTTGAGTTTGG---------CCTGCAAGCAATGTGATGCTGGCTCTGCATCTTGTAC---CTGTTCCC-----------------------------TCACC----CTCAGTGCACAGGAGTAACTGCCCTG-----TCTTCAGTGAGA-AAGAGGAGCAGCCTTCTAC-TGCAGCCATCCCAGCAGGCTCATCTTC--ATCAG------------TGTGACATGGCCAG------GCTTAAGATACGT-------------GGC--CATCCCAC--CCTGACAAGTCAGCAGAGTGAGCCCTTCCACAGCCA---------TTTTTG--TCTCTCCGAGTGAGTGAAGCCAAATGTGGACGTGA------GCTCAGTGGCCGTGCCT----------------------------------------------GGTT----TCT--GTCTGGGGA----AGCA-- i mm10.chr12 I 453 C 0 s dasNov3.JH580157 598715 1058 + 2232271 tgaaaagg-ctgaaatcagaaaaaggggGGCGGTGTGGGGAGGACAGAAATGGGAGCAGTG-GGC-CGGTCA---TAAGGATGAATGGCCATTGTAAAT---ATTTCAACAATTGAAGTAACATAACTTAAAGCTAAATGAGCAT-GTCATAGGATTTATTTCATTTCCCTAAGATTAAAGTTTTTTGGTATTATGTGCATGGAAATGTAAAGGAGATATAGTATTTTCTACAATCTTGAACAATAGCTACAAACACAAGGTGAGTATTCATATTTATATTACTATTTTAAGGCTTCATATTTTAAGTCTCAGAGATGAAGTAGGTATTGAGTTAATGCTGAATTACAGGAAGAAAGTTAGGG-----AATGTACTCAGTGGAATGAGAAAGACTCAGCAAAGCATAAAGGCTAAAACTC--CCATGTATTTAGGCCCATTTCTGCTTATCTTCTGAGATCACAAAGTTCAACAACTGTTGCATGGACAGTGGTCATTTCCTGTATCAG---CCTGC-TTGTGAAGAGGGCCAAAGAGAAGACTCCTT-------GAAAGTAAATGTACAGTTCTCCAAGAGCATACTGTTCCAGAAGAAAGCCAGTGTGTCTCCCCCTGCCAAATGATCCCAGCTAAGAAAG---GCAATTATTTAAAGCCAGGCATCCCAGGGTATTGTTTT-CCTGATTTGGATGTGTAATTCATGATG----ACATACACTGTCAGCCATACCCAGTTTTCTTGCCACATTCTCTCCTGCTCTGTTTCCTTCTTGTCTCCTTTCAATTTATAGTAGTCATTGCAGTGGTAAATCCTTCAGAAAATGAACAGACCACCC-----TGTAC-----CTCTACTAGTGCTGTCATTAAATCAGATTTCAAGTCAATAATATA-GAACAAATAAGGACTAAA---ACATTTTTAAGTGTTTAGGT--CATCTTAA-AATTGGCAAAAGAATAAGTTAAATGCCTTCTCCATTTACTTTCTTTTCTCTC--TCT--CTGAGCGTGTATGGGAGAATATGAAAAAGACATACGTACTCACAGAGATATTT------------------------------ATCTGAGTAATACCCACTTTCCCACCTTAGTTTGGGCATTGTCATTCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e otoGar3.GL873658 2563051 275 + 5252280 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I a score=1503424.000000 s hg38.chr2_KI270769v1_alt 80196 224 + 120616 AACAAGAGCACTGAAATGCAAACACTAATCAAAA----AGGA--A--GTATTTTCCATTTTAATTC-TAAAGAGTGGAAATAGAAAAAAATGATTTTGCTAAAACAAAATATGCAGACACCTTTGGGAAAA-CGTGCTATAAAGGAACCATGCTAACTCCAGAGATG-ACCCAGCCGGACAGAGGTGAAAGGGGTGGACGGACAGCAAGGTTCTAGATGATTCCACACAGTTGGG s panTro5.chr2A 3542007 224 + 111504155 AACAAGAGCACTGAAATGCAAACACTAATCAAAA----AGGA--A--GTATTTTCCATTTTAATTC-TAAAGAGTGGAAATAGAAAAAAATGATTTTACTAAAACAAAATATGCAGACACCTTTGGGAAAA-CGTGCTATAAAGGAACCATGCTAACTCCAGAGATG-ACCCAGCCGGACAGAGGTGAAAGGGGTGGACGGACAGCAAGGTTCCAGATGATTCCACACAGTTGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3402756 220 + 114371477 AACAAGAGCACTGAAATGCAAACACTAATCAAAA----AGGA--A--GTATTTTCCATTTTAATTC-TAAACAGTGGAAATAGAAAAAAATGATTTTACTA----AAAATATGCAGACACCTTTGGGAAAA-CGTGCTATAAAGGAACCATGCTAACTCCAGAGATG-ACCCAGCCGGACAGAGGTGAAAGGGGTGGACGGACAGCAAGGTTCCAGATGATTCCACACAGTTGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 280581 224 + 637652 AACAAGAGCACTGAAATGCAAGCACTAATCAAAA----AGGA--A--GTATTTTCCATTTTAATTC-TAAAGAGTGGAAATAGAAAAAAATGATTTTACTAAAACAAAATATGCAGACACCTTTGGGAAAA-CGTGCTATAAAGGAACCATGCTAACTCCAGAGATG-ACCCAGCCGGACAGAGGTGAAAGGGGTGGACGGACAGCAAGGTTCTAGATGATTCCACACAGTTGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3076510 224 + 81552678 AACAAGAGCACTGAAAAGCAAACACTAATCAAAA----AGGA--A--GTATTTTCCATTTTAATTC-TAAAGAGTGGAAATAGAAAAAAATGATTTTACTAAAACAGAATATGCAGACACCTTTGGGAAAA-CGTGCTATAAAGGAACCATGCTAACTCCAGAGACG-ACCCAGCCGGACAGAGGTGAAAGGGGTGGACAGACAGCAAGGTTCTAGATGATTCCACACACTTGGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3339763 224 + 108979918 AACAAGAGCACTAAAAAGCAAACACTAATTGAAA----GGGA--A--GTATTTTCCATTTTCATTC-TAAAGAGCGGAAATAGAAAAAAATGATTTTACTAAAACAAAATATGCAGACACCTTTGGGAAAA-CGTGCTGTAAAGGAAGCATGCTAACTCCAGAGATG-ACCCAGCCGGACAGAGGTGAAAGGGGTGGACGGACAGCAAGGTTCTAGATGATTCCACACAGTTGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5050708 224 - 111193037 AACAAGAGCACTAAAAAGCAAACACTAATTGAAA----GGGA--A--GTATTTTCCATTTTCATTC-TAAAGAGCGGAAATAGAAAAAAATGAGTTTACTAAAACTAAATATGCAGACACCTTTGGGAAAA-CGTGCTGTAAAGGAAGCATGCTAACTCCAGAGATG-ACCCAGCCGGACAGAGGTGAAAGGGGTGGACGGACAGCAAGGTTCTAGATGATTCCACACAGTTGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3443324 224 + 3644372 AACAAGAGCACTAAAAAGCAAACACTAATTGAAA----GGGA--A--GTATTTTCCATTTTCATTC-TAAAGAGCGGAAATAGAAAAAAATGATTTTACTAAAACAAAATATGCAGACACCTTTGGGAAAA-CGTGCTGTAAAGGAAGCATGCTAACTCCAGAGATG-ACCCAGCCGGACAGAGGTGAAAGGGGTGGACGGACAGCAAGGTTCTAGATGATTCCACACGGTTGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3398616 224 - 10304083 AACAAGAGCACTAAAAAGCAAACACTAATTGAAA----GAGA--A--GTATTTTCCATTTTCATTC-TAAAGAGCGGAAATAGAAAAAAATGATTTTACTAAAACAAAATATGCAGACACCTTTGGGAAAA-CGTGCTGTAAAGGAAGCATGCTAACTCCAGAGATG-ACCCAGCCGGACAGAGGTGAAAGGGGTGGACGGACAGCAAGGTTCTAGATGATTCCATACAGTTGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3501207 222 - 107702431 AAC--GAGCACTGAAAAGCAAACACTAATTGAAA----AGGA--A--ATATTTTCCATTTTCATTC-TAAAGAGTGGAAGTAGAAAAAAATGATTTTACTAAAACAAAATATGCAGACACCTTTGGGAAAA-CGTGCTGTAAAGGAAGCATGCTAACTCCAGAGATG-ACCCAGCTGGACAGAGGTGAAAGGGGTGTACGGACAGCAAGGTTCTAGATGATTCCACACAGTTGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1031382 224 + 1565135 AACAAGAGCACTGAAAAGCAAACACTAATTGAAA----GGGA--A--GTATTTTCCATTTTCATTC-TAAAGAGCAGAAATAGAAAAAAATGATTTTACTAAAACAAAATATGCAGACACCTTTGGGAAAA-CGTGCTGTAAAGGAAGCATGCTAACTCCAGAGATG-ACCCAGCCGGACAGAGGTGAAAGGGGTGGACGGACAGCAAGGTTCTAGATGATTCCACACAGTTGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3395893 220 - 13651311 AAC--GAGCACTGAAAAGCAAACACCAATCGAAA----GGGA--A--GTATTTTCCATTTTCATTC-TAAAGAGTGGAAATAGAAAAAAATGATTTTA-TAAAACAAAATATGCAGACACCTTTGGGAAAA-CGTGCTGTAAAGGAAGCATGCTGACTCCAGAGATG-ACCCAGCCGGGCAGAGGTGAAA-GGGTGGACGGACAGCAAGGTTCTAGATGATTCCACACAGTTGGG i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2563326 200 + 5252280 aaagagaaaACTGAAGAGCAAACACTAATCAAAA----ATAAATA--GTATATTCCATTTTAATTC-TAAAGAGTGAAAATAG-AGGAAACAACTTCACTAAGACAAAATATGCAGAAGCCTGTGGAAAAAGTATGATAGAAAGGAACTGTGGTGACTCTGGAGGTG-------------------GAAACCGATGGACG----ACAGGTTTCTGGAAAGTTCCACCCAGG---- i otoGar3.GL873658 I 275 C 0 s mm10.chr12 91433383 173 - 120129022 CACTTGAGTCCTGAAAAGCAGACACTGATGCAAACAGGGCGA--A--GCACTTTCTA-TACAACAC-TAAAGTGTGGGACTAGAAG----------TGCTTTAGTACAAAGCGCAGAGGGCTGTGGCGAAG-TCTGGT-----GACATCAT----------------------------------------GGATGGACAGACAGTGGGTTCCTAGATGACGTCACATGGGGGGA i mm10.chr12 C 0 C 0 s dasNov3.JH580157 599773 225 + 2232271 AACAAGAGCACTGAAAAGTAAACACTAACCAAAA----AGGA--ATGACATTTTCCATTTTAATTCTTAAAAAAGGGATATAG-AAAAGATGATTTTACTAAAACAAAATATGCAGAAGTCCATGAGGAAA-TATGATATAAAAGAGCCATAATAATGCTAGAGATGTATTGAGCCAAGTTAAGGTAAAGTAAAC--ATGGACATGAAGTTTCTGGGTTATAATACACAGTGGGG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3129564 299 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 615554 302 + 5243153 I e aotNan1.NW_018509326v1 3358543 312 + 7587287 I e calJac3.chr14 3485597 297 - 108792865 I a score=1314790.000000 s hg38.chr2_KI270769v1_alt 80420 146 + 120616 CTGAGAACACTGTCACCGCACCTCCTCTTTGTGTTTAAAATTTTGCATTGAATGT--------------------------------------AGGTGCCTCTGA-AA---TA---TGCGAGC-----TAAAAATAGGAA----GCTCACTCACTGACCACACCAACAGTTGCCCGGTCACACGAGAAGATA-CACTGGCG s panTro5.chr2A 3542231 146 + 111504155 CTGAGAACACTGTCACCGCACCTCCTCTTTGTGTTTAAAATTTTGCATTGAATGT--------------------------------------AGGTGCCTCTGA-AA---TA---TGCGAGC-----TAAAAATAGGAA----GCTCACTCACTCACCACACCAACAGTTGCCCGGTCACACGAGAAGATA-CACTGGCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3402976 146 + 114371477 CTGAGAACACTGTCACCGCACCTCCTCTTTGTGTTTAAAATTTTGCATTGAATGT--------------------------------------AGGTGCCTCTGA-AA---TA---TGCGAGC-----TAAAAATAGGAA----GCTCACTCACTCACCACACCAACAGTTGCCCGGTCACACGAGAAGATA-CACTGGCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 280805 141 + 637652 CTGAGAACACTGTCACCGCACCTCCTC-TTGTGTTTAAAATTTTGCATTGAATGT--------------------------------------AGGTGCCTCTGA-AA---TA---TGCGAGC-----TAAAAATAGGAA----GCTCACTC----ACCACACCAACAGTTGCCCGCTCACACGAGAAGATA-CACTGGCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3076734 146 + 81552678 CTGAGAACACTGTCACTGCACCTCCTCTTTGTGTTTAAAATTTTGCATTGAATGT--------------------------------------AGGTGCCTCTGA-AA---TA---CGCGAGC-----TAAAAATAGGAA----GCTCACTCACTTACCACACCAAGAGTTGCCCAGTCATACGAGAAGATA-CACTGGCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3339987 142 + 108979918 CTGAGACCACTGACACTGCACCTCCTCTTTGTGTTTAAAATTTTGTGTTGAATGT--------------------------------------AGGTGCCTTTAA-AA---TA---TGCGAGC-----TAGAAATAGGAA----ACTCACTC----ACCACACCAGCAGCTGCCATTTCACACGAGAAGATA-CACTGGCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5050932 127 - 111193037 CTGAGACCACTGACACTGCACCTCCTCTTTGTGTTT---------------ATGT--------------------------------------AGGTGCCTTTAA-AA---TA---CGTGAGC-----TAGAAATAGGAA----ACTCACTC----ACCACACCAGCAGCTGCCATTTCACACGAGAAGATA-CACTGGCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3443548 142 + 3644372 CTGAGACCACTGACACTGCACCTCCTCTTTGTGTTTAAAATTTTGTGTTGAATGT--------------------------------------AGGTGCCTTTAA-AA---TA---TGCGAGC-----TAGAAATAGGAA----ACTCACTC----ACCACACCAGCAGCTGCCATTTCACACGAGAAGATA-CACTGGCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3398840 140 - 10304083 CTGAGACCACTGACACTGCACCTCCTCTTTGTGTTTAAAATTTTGTGGTGAATGT--------------------------------------AGGTGCCTCTAA-AA---TA---TGCGAGC-----TAGAAATAGGAA----ACTCACTC----AT--CACCAGCAGCTGCCATTACACACGAGAAGATA-CACTGGCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3501429 142 - 107702431 CTGAGACCACTGACACTGCACCTCCTCTTTGTGTTTAAAATTTTGTGTTGAATGT--------------------------------------TGGTGCCTCTAA-AA---TA---TGCGAGC-----TAGAAATAGGAA----ACTCACTC----ACCACACCAGCAGCTGCCATTTCACACGAGAAGATA-CACTGGCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1031606 142 + 1565135 CTGAGACCACTGACACTGCACCTCCTCTTTGTGTTTAAAATTTTGTGGTGAATGT--------------------------------------AGGTGCCTCTAA-AA---TA---TGCGAGC-----TAGAAATAGGAA----ACTCACTC----ACCACACCAGCAGCTGCCATTTCACACGAGAAGATA-CACTGGCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3396113 142 - 13651311 CTGAGACCACTGACACTGCACCTCCTCTTTGCGTTTAAAATTTTGTGTTGAATGT--------------------------------------AGGTGCCTCTAA-AA---TA---TGCGAGC-----TGAAAATAGGAA----AGTCACTC----ACCACACCAGCAGCTGCCATTTCAGTCAAGAAGATA-CACTGGCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 105306976 140 + 108792865 CTGAGAACACTGTCCCTGCACCTCTTCTTTGTGTTTAAAATTTTGCATTGAATGT--------------------------------------AGATGGCTCTAA-AA---TA---T--GAGC-----GGAAAACCGGAA----ACTCACTT----ATCACACCAACAGCTGCCAGGTTGAACGAGAAGACA-CACTGGCG i calJac3.chr14 n 297 C 0 s saiBol1.JH378218 3952746 140 + 7082604 CTGAGAACACTGTCCCTGCACCTCTTCTTTGTGTTTAAAATTTTGCATCGAATGT--------------------------------------AAGTGGCTCTAA-AA---TA---T--GAGC-----GAAAAATGGGAA----ACTCACTT----ATCACACCAGCAGCTGCCAGATCGGACGAGAAGACA-CACTGGCG i saiBol1.JH378218 n 299 C 0 s cebCap1.NW_016107454v1 4627304 140 - 5243153 CTGAGAACACTGTCCCTGCACCTCTTCTTTGTGTTTAAAATTTTGCATTGAATGT--------------------------------------AGGTGGCTCTAA-AA---TA---T--GAGC-----GAAAAATGGGAA----ACTCACTT----ATCACACCAGCAGCTGCCAGGTTGGACGAGAAGACA-CACTGGTG i cebCap1.NW_016107454v1 n 302 C 0 s aotNan1.NW_018509326v1 4228439 144 - 7587287 CTGAGAACACTGTCCCTGCACCTCCTCTTCGTGTTTAAAATTTTGCATTGAATGT--------------------------------------AGGTGGCTCTAA-AA---TA---T--GAGC-----GAAAAATGGGAAACTCACTCACTT----ATCACACCAACAGCTGCCAGGTCGGACGAGAAGACA-CACTGGCG i aotNan1.NW_018509326v1 n 312 C 0 s otoGar3.GL873658 2563526 138 + 5252280 ATTACAACACTGTCTCTACAC--TCTCACTGTGTTTCACATTTCCCATTAAATTTGTT-------------------------------TTTGACGTACTTCCAA-AA---TAATTTGTGAAC-----TAAAAATAGGAG----ACTCAGTT----GTCACATCAACAATGACTGTATTGTAAAAGAA------------- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91433556 149 - 120129022 -TTGGAATATTGCCA-TGCGCCTTGGCTGCGGGCTTCTCACTTGTATTTATATTTGTT-------------------------------TCTAAGGTTTTTCTAGTGC---TG---TGTGACC-----TAAGAATAGGGC---CATTCCTTT----ATCACCTCA-CAATTGCTGGACCACAGAGAAAGACAGCTTTGACA i mm10.chr12 C 0 C 0 s dasNov3.JH580157 599998 189 + 2232271 TTTAGAATATTGTCACCGTACCTTCTCTGTATGTTTCAAATTCTTCAATGAATTCCATTTTAATTCTCTAGTACTAGGCCATTATGTGGTCTAAGGTCATTCTAG-AGTGTTA---TGTGATCTATTATAAAATTAAGAG----ACTCACTCGTTCACCACACCAGTAATTGCTAGAGTA---GAAAAGATA-CATTGGCA i dasNov3.JH580157 C 0 I 1445 e micMur3.chr8 2667704 2295 - 159902609 I e canFam3.chr17 2060480 739 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=1644695.000000 s hg38.chr2_KI270769v1_alt 80566 157 + 120616 AATA-CAAGGATGGCACAGATG-----------CCCTCACTTTGTGTTAGGCCTCCGAGGAGCTGAC-TTTCAATTTTAATATTTCAAAACGTATTCTACTTTTGAATAGCAATCCTTATTCTTTCCAAGAAATTCATAGCATAATTCTGGGCACTGAGCAAAGGGTCAC s panTro5.chr2A 3542377 157 + 111504155 AATA-CAAGGATGGCACAGATG-----------CCCTCACTTTGTGTTAGGCCTCCGAGAAGCTGAC-TTTCAATTTTAATATTTCAAAACGTATTCTACTTTTGAATAGCAATCCTTATTCTTTCCAAGAAATTCATAGCATAATTCTGGGCACTGAGCAAAGGGTCAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3403122 157 + 114371477 AATA-CAAGGATGGCACAGATG-----------CCCTCACTTTGTGTTAGGCCTCCGAGAAGCTGAC-TTTCAATTTTAATATTTCAAAACGTATTCTACTTTTGAATAGCAATCCTTATTCTTTCCAAGAAATTCATAGCATAATTCTGGGCACTGAGCAAAGGGTCAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 280946 157 + 637652 AACA-CAAGGATGGCACAGATG-----------CCCTCACTTTGTGTTAGAGCTCCGAGGAGCTGAC-TTTCAATTTTAATATTTCAAAACGTATTCTACTTTTGAATAGCAATCCTTATTCTTTCCAAGAAATTCATAGCATAATTCTGGGCACTGAGCAAAGGGTCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3076880 157 + 81552678 AATA-CAAGGATGGCACAGATG-----------CCCTCACTTTGTGTTAGGGCTCCAAGGAGCAGAC-TTTCAATTTTAATGTTTCAAAACGTATTCTACTTTTGAATAGCAATCCTTGTTCTTTCCAAGAAATCCATAGCATAATTCTGGGCACTGAGCAAAGGGTCAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3340129 157 + 108979918 AATA-CAAGGATGGCCCAGATG-----------CCCTCACTTTGTGTTAGGGCTCCAAGGAGCAGAC-TTTCTATTTTAATATTTCAAAACATATTCTACTTTTGAATAGCAATCCTTGCTCTTTCCAAGAAGTTCAGAGCATAATTCCGGGCACTGAGCAAAGGGTCAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5051059 157 - 111193037 AATA-CAAGGATGGCCCAGATG-----------CCCTCACTTTGTGTTAGGGCTCCAAGGAGCAGAC-TTTCTATTTTAATATTTCAAAACACATTCTACTTTTGAATAGCAATCCTTGCTCTTTCCAAGAAGTTGAGAGCATAATTCCGGGCACTGAGCAAAGGGTCAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3443690 157 + 3644372 AATA-CAAGGATGGCCCAGATG-----------CCCTCACTTTGTGTTAGGGCTCCAAGGAGCAGAC-TTTCTATTTTAATATTTCAAAACATATTCTACTTTTGAATAGCAATCCTTGCTCTTTCCAAGAAGTTCGGAGCATAATTCCGGGCACTGAGCAAAGGGTCAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3398980 157 - 10304083 AATA-CAAGGATGGCCCAGATG-----------CCCTCACTTTGTGTTAGGGCTCCAAGGAGCAGAC-TTTCTATTTTAATATTTCAAAACATATTCTACTGTTGAATAGCAATCCTTGCTCTTTCCAAGAAGTTCAGAGCATAATTCCGGGCACTGAGCAAAGGGTCAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3501571 157 - 107702431 AATA-CAAGGATGGCCCAGATG-----------CCCTCACTTTGTGTTAGGGCTCCAAGGAGCAGAC-TTTCTATTTTAATATTTCAAAACATATTCTACTTTTGAATAGCAATCCTTGCTCTTTCCAAGAAGTTCAGAGCATAATTCCGGGCACTGAGCAAAGGGTCAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1031748 157 + 1565135 AATA-CAAGGATGGCCCGGATG-----------CCCTCACTTTGTGTTAGGGCCCCAAGGAGCAGAC-TTTCTATTTTAATATTTCAAAACATATTCTACTGTTGAATAGCAATCCTTGCTCTTTCCAAGAAGTTCAGAGCATAATTCCGGGCACTGAGCAAAGGGTCAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3396255 157 - 13651311 AATA-CAAGGATGGCACAGATG-----------CCCTCACTTTGTGTTAGGGCCCTGAGGAGCAGAC-TTTCTATTTTAACATTTCAAAACATATTCCACTTTTGAATAGCAATCCTTGCTCTTTCCAAGAAGTTCAGAGCATAATTCCGGGCACTGAGCAAAGGGTCAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 105307116 155 + 108792865 AATGGCAAGGACAGCACAGCTG------------CCCCACTGTGAGAG--GGCTCCGAGGAGCAGAC-TTTCCATTTTCTTATTTCAGAACAGATTCCACTTTTGAACAGCAATCCTTGTTCTTTCTGAGAAATTCATAGCCTAATTCTGGGCACTGAGCAAAGGGTCAC i calJac3.chr14 C 0 n 0 s saiBol1.JH378218 3952886 157 + 7082604 AATGCCAAGGACAGCACAGGTG-----------TCCTCACTTTGTGAGA-GGCTCTGAGGAGCAGAC-TTTCCACTTTATTATTTCAACATGTATTCCACTTTTGAATAGCAATCCTTGTTCTTTCCAAGAAATGCATAGCATAATTCTGGGCACTGAGCAAAGGGTCAC i saiBol1.JH378218 C 0 n 0 s cebCap1.NW_016107454v1 4627444 158 - 5243153 AATGCCAGGGACAGCACAGGTG-----------CCCTCACTTTGTGAGAGGGCTCTGAGGAGCACAC-TTCCCATTTTATTATTTCAGAACATATTCCACTTTTGAATAGCAATCCTTGTTCTTTCCAAGAAATGCATAGCATAATTCTGGGCACTGAGCAAAGGGTCAC i cebCap1.NW_016107454v1 C 0 n 0 s aotNan1.NW_018509326v1 4228583 142 - 7587287 AGTGCCAGGGACAGCACAGCTG-----------CCCTCACTTTGTGAGAGGGCTCCGAGGAGCAGAC-TTTCCATTGCATTATTTCAAAACATATT--ACTTGTGAATAGCAATCCTTTTT--------------CACAGCATAATTCTGGGCACTGAGCAAAGGGTCAC i aotNan1.NW_018509326v1 C 0 n 0 s otoGar3.GL873658 2563664 128 + 5252280 ---------GATGGATCAGATT-----------GCCTCACTTCATATTAGGTCTCCTAGGAACAGACTTTTCAATTTTACTATTTCAAAATGTATTTTACT----------------------TTCCAAGAAATGCGTAACGTAATTCTGGGTACTGAGCAGAGGGTCAC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91433705 159 - 120129022 AATA---TGAATGTCCCAGAGGCACATGCCCCTCCCCTAGCCTCTGCTATGTCTCCTGGCCACAAAC-CCCCTGTTGTAATCTTTCAGGGTGTTTTATTCT-----GAAGCAGTGCTCATTCTTTCTGAGATGAACGTAGAGCAAGTCT-GGCTGTGAGCAG-GGGTCAC i mm10.chr12 C 0 C 0 s dasNov3.JH580157 601632 157 + 2232271 AATA-AGAGAGCATGACAGATT-----------GCCTCGCCTTGTATTTGGTCTCCTAATAAGAAAC-TTGGAATTTCAATCTTTCAAGATGTATTTTACTTTTGAAAAGCTATCCTAATTCTTTCCAAGAAATTCATAACATAATTCTGCTTACCAAGGGAAGAGTTGC i dasNov3.JH580157 I 1445 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e canFam3.chr17 2060480 739 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=143583.000000 s hg38.chr2_KI270769v1_alt 80723 22 + 120616 CTGTTCGGTTTGTGTGCTGTTC s panTro5.chr2A 3542534 22 + 111504155 CGGTTCAGTTTGTGTGCTGTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3403279 22 + 114371477 CTGTTCAGTTTGTGTGCTGTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 281103 22 + 637652 CTGTTCAGTTTGTGTGCTGTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3077037 22 + 81552678 CTGTTCAGTTTGTGTGCTGTTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3340286 22 + 108979918 CTATTCAGTTTGTGTGCTGTTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5051216 20 - 111193037 GTATTCAG--TGTGTGCTGTTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3443847 22 + 3644372 CTATTCAGTTTGTGTGCTGTTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3399137 20 - 10304083 CTATTCAG--TTTGTGCTGTTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3501728 22 - 107702431 CTATTCAGTTTGTGTGCTGTTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1031905 20 + 1565135 CTATTCAGTT--TGTGCTGTTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3396412 22 - 13651311 CTATTCAGTTTGTGTGCTGTTC i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2563792 22 + 5252280 CTATTCAGCTTGTGTGCTAGTC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91433864 22 - 120129022 CTGTGCTGACTGTGTGCCATTC i mm10.chr12 C 0 C 0 s dasNov3.JH580157 601789 22 + 2232271 CTATTCACTTTCTATGCTAGCC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e canFam3.chr17 2060480 739 + 64289059 I e saiBol1.JH378218 3953043 0 + 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 4627602 0 - 5243153 I e aotNan1.NW_018509326v1 4228725 0 - 7587287 I e calJac3.chr14 105307271 0 + 108792865 I a score=854407.000000 s hg38.chr2_KI270769v1_alt 80745 140 + 120616 ACATTCCAGCTGGAA-ACCCTGGCTCAAA------------TTACAGAATTGTA-------------CTTGGGGT----TTAATGCCTGCATAT-AAGGGA--GGATCCATCTCCCC---CCTCGGCCTCGTCCCGCAGGCAGAACT-ATC--ATAG--CCACGTTCCCTGCCAACTGTCA s panTro5.chr2A 3542556 140 + 111504155 ACATTCCAGCTGGGA-ACCCTGGCTCAAA------------TTACAGAATTGTA-------------CTTGGGGT----TTAATGCCTGCATAT-AAGGGA--GGATCCATCTCCCA---CCTCGGCCTCGTCCCGCAGGGAGAACT-ATC--ATAG--CCACGTTCCCTGCCAACTGTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3403301 140 + 114371477 ACATTCCAGCTGGGA-ACCCTGGCTCAAA------------TTACAGAATTGTA-------------CTTGGGGT----TTAATGCCTGCATAT-AAGGGA--GGATCCATCTCCCA---CCTCGGCCTCGTCCCGCAGGGAGAACT-ATC--ATAG--CCACGTTCCCTGCCAACTGTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 281125 139 + 637652 ACATTCCAGCTGGAA-ACCCTGGCTCAAA------------TTACAGAATCGTA-------------CTT-GGGT----TTAATGGCTGCATAT-AAGGGA--GGATCCATCTCCCC---CCTCGGCCTCGTCCCGCAGGCAGAACT-ATC--ATAG--CCACGTTCCCTGCCAACTGTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3077059 140 + 81552678 ACATTCCAGCTGGAA-ACCCTGGCTTAAA------------TTACAGAATTATA-------------CTTGGGGT----TTAATGCCTGCATAT-AAGGGA--GGATCCATCTCCCA---ACTCGGCCTCGTCCCGCAGGCGGAACT-GTC--ATAG--CCACGTTCCCTGCCAACTGTCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3340308 140 + 108979918 ACATTACAGCTAGAA-ACCCTGGCTCCAA------------TGGCAGAATCGTA-------------CTTGGGAT----TTAATGCCTGCATAT-AGGGGA--GGATCCATCTCTCA---CCTAGGCCTCATCCTGCAGGCGGGACT-GTC--ATAG--CCACGTTCCCTGCCAGCTGTTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5051236 140 - 111193037 ACGTTACAGCTGGAA-ACCCTGGCTCCAA------------TGGCAGAATCGTA-------------CTTGGGAT----TTAATGCCTGCATAT-AGGGGA--GGATCCATCTCTCA---CCTAGGCCTCATCCTGCAGGCGGGACT-GTC--ATAG--CCACGTTCCCTGCCAGCTGTTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3443869 140 + 3644372 ACATTACAGCTAGAA-ACCCTGGCTCCAA------------TGGCAGAATCGTA-------------CTTGGGAT----TTAATGCCTGCATAT-AGGGGA--GGATCCATCTCTCA---CCTAGGCCTCATCCTGCAGGCGGGACT-GTC--ATAG--CCACGTTCCCTGCCAGCTGTTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3399157 140 - 10304083 ACGTTACAGCTGGAA-ACCCTGGCTCCAA------------TGGCAGAATCGTA-------------CTTGGGAT----TTAATGCCTGCATAT-AGGGGA--GGATCCATCTCTCA---CCTCGGCCTCATCCTGCAGGCGGGACT-GTC--ATAG--CCACGTTCCCTGCCAGCTGTCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3501750 140 - 107702431 ACATTACAGCTAGAA-ACCCTGGCTCCAG------------TGACAGAGTCGTA-------------CTTGGGAT----TTAATGCCTGCATAT-AGGGGA--GGATCCATCTCTCA---CCTAGGCCTCATCCTGCAGGCGGGACT-GTC--ATAG--CCACGTCCCCTGCCAGCTGTCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1031925 140 + 1565135 ACGTTACAGCTGGAA-ACCCTGGCTCCAA------------TGGCAGAATCGTA-------------CTTGGGAT----TTAATGCCTGCATAT-AGGGGA--GGATCCATCTCTCA---CCTCGGCCTCATCCTGCAGGCGGGACT-GTC--ATAG--CCACGTTCCCTGCCAGCTGTCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3396434 140 - 13651311 ACGTTACAGCTGGAA-GCCCGGGCTCCAA------------TGACAGAATCGTA-------------CTTGGGAT----TTAATGCCTGCATAT-AGGGGA--GGATCCATCTCTCA---CCTTGGCCTCATCCTGCAGGCGGGACT-GTC--ATAG--CCACGTTCCctgccagctgcca i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2563814 153 + 5252280 ACATTACAGCAGCAGTGCCCTGACTCAAAC-ATACAGTATGTTAAAGAATTTTA-------------CTTGAGGT----TT-ATACCAAGGTAT-GAGAGA--GAGTTCATTGCTCA---CCTTTGCCAAGTCCCAGAGACATGACT-GTCTTATGC--CCACGTTCCCTGCCAACCACCA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91433886 149 - 120129022 ACGTGACAGCTGGAG---CCCAGCTCAGGC-----------CGGTAGCACAGTAAAGGGTTTGTTATTTCGGTAT----CCAGTTCCCAGGTAT-GAGGGA--G-------CTCTCAAAGCCTTTGCCTGTCCCCACAGCTTGACTTCCTC--CTCC--CCACACTCCCTGCCAGCCTTCA i mm10.chr12 C 0 C 0 s canFam3.chr17 2061219 107 + 64289059 ACGCCCCAGGCTGCT-GCCCTGGC-----------------CTGGAGAATGCTA-------------CTCCAGGTGCGGTCAGGACCTGGACCTGAGGGGC--GAGCCCATCTCTCA---CCTTGGCACGTTACCTC--------CT-GTC--A--------------------------- i canFam3.chr17 I 739 C 0 s dasNov3.JH580157 601811 157 + 2232271 ACATTACATGTGGAAAAATCTGACTTAAAAAATACAATACAATAAAGAATTTTA-------------TTTTAGAT----GTAATACCTTGATAT-AAAGAAATGAGTCAGTTTCTCA---CCTTTGCCCGGTTTCACAGGTCTGATT-ATC--TTAAATCCACACACCCTGCCGTCTGTTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e saiBol1.JH378218 3953043 0 + 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 4627602 0 - 5243153 I e aotNan1.NW_018509326v1 4228725 0 - 7587287 I e calJac3.chr14 105307271 0 + 108792865 I a score=20060.000000 s hg38.chr2_KI270769v1_alt 80885 2 + 120616 GC s panTro5.chr2A 3542696 2 + 111504155 GC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3403441 2 + 114371477 GC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 281264 2 + 637652 GC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3077199 2 + 81552678 GT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3340448 2 + 108979918 GC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5051376 2 - 111193037 GC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3444009 2 + 3644372 GC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3399297 2 - 10304083 GC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3501890 2 - 107702431 GC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1032065 2 + 1565135 GC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3396574 2 - 13651311 gc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3485894 2 - 108792865 GT i calJac3.chr14 I 297 C 0 s saiBol1.JH378218 3129863 2 - 7082604 GT i saiBol1.JH378218 I 299 C 0 s otoGar3.GL873658 2563967 2 + 5252280 GT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91434035 2 - 120129022 GA i mm10.chr12 C 0 C 0 s canFam3.chr17 2061326 2 + 64289059 GC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 601968 2 + 2232271 GC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 4627602 0 - 5243153 I e aotNan1.NW_018509326v1 4228725 0 - 7587287 I a score=3280649.000000 s hg38.chr2_KI270769v1_alt 80887 377 + 120616 GCACCCGCCAGACAGGTGACAGC-CG--TGTTTC-AAAACTCACATGCCT-GCTGTGATCATTTCCACAGTCCCTTCAT----CTTCATCACACAGAGCCTCCTTTAGAGCACCAGGGCCTCC-ACACAGCAAGG---GGGCTGGG-------GGTTAGGAGGAGAGAGAA--TGGGGCCCAGTGGGAATTTCCAGTTCTGA-AG-GAA-ATCTGTGTTGTAAGCAAGA-TTGAAGTCA-TTTGTATTCCAGAGGAGTTTCTCACATA---ATCTAAATTAAGGAGGGGCAGAAGCAACT-GATCTTCAAAC--AGAAGAAGCATTATATTCATACTTCTTAGAATTACTTCACTCCAA------------CTTAGATTCCA---CCTCAGAATCTCT------T--GACTTGGGTCTTA--------------------------------------------------------------------------------------------------GAGGGTCCTCACT s panTro5.chr2A 3542698 362 + 111504155 GCACCCGCCAGCCAGGTGACAGC-CG--TGTTT--ACAACTCACATGCCT-GCTGTGATCATTTCCACAGTGCCTTCAT----CTTCATCACACAGAGCCTCCTTTAGAGCACCGGGGCCTCC-ACACAGCAAGG---GGGCTGGG-------GGTTAGGAGGAGAGAGAA--TGGGGCCCAGTGGGAATTTCCAGTTCTGA-AG-GAA-ATCTGTGTTGTAAGCAAGA-TTGAAGACA-TTTGTATTCCAGAGGAGTTTCTCACATA---ATCTAAATTAAGGAGGGGCAGAAGCAACT-GATCTTCAAAC--AGAAGAAGCATTATATTCATACTTCTTAAAATTACTTCACTCCAA------------CTTAGATTCCACCTCCTCAGAATCTCT------T--GACTTGGGT------------------------------------------------------------------------------------------------------------------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3403443 362 + 114371477 GCACCCGCCAGCCAGGTGACAGC-CG--TGTTT--ACAACTCACATGCCT-GCTGTGATCATTTCCACAGTGCCTTCAT----CTTCATCACACAGAGCCTCCTTTAGAGCACCGGGGCCTCC-ACACAGCAAGG---GGGCTGGG-------GGTTAGGAGGAGAGAGAA--TGGGGCCCAGTGGGAAGTTCCAGTTCTGA-AG-GAA-ATCTGTGTTGTAAGCGAGA-TTGAAGACA-TTTGTATTCCAGAGGAGTTTCTCACATA---ATCTAAATTAAGGAGGGGCCGAAGCAACT-GATCTTCAAAC--AGAAGAAGCATTATATTCATACTTCTTAAAATTACTTCACTCCAA------------CTTAGATTCCACCTCCTCAGAATCTCT------T--GACTTGGGT------------------------------------------------------------------------------------------------------------------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 281266 376 + 637652 GCACCCGCCAGCCAGGTGACAGC-CG--TGTTT--AAAACTCACATGCCT-GCTGTGATCATTTCCACAGTCCCTTCAT----CTTCATCACATAGAGCCTCCTTTAGAGCACCGGGGCCTCC-ACACAGAAAGG---GGGCTGAG-------GGTTAGGAGGAGAGAGAA--TGGGGCCCAGTGGGAATTTCCAGTTCTGA-AG-GAA-ATCTGTGTTGTAAGCGAGA-TTGAAGACA-TTTGTATTCCAGAGGAGTTTCTCACATA---ATCTAAATTAAGGAAGGGCAGAAGCAACT-GATCTTCAAAC--AGAAGAAGCATTATATTCATACTTCTTAAAATTACTTCACTCCAA------------CTTAGATTCCA---CCTCAGAATCTCT------T--GACTTGGGTCTTA--------------------------------------------------------------------------------------------------GAGGGTCCTCACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3077201 379 + 81552678 GCACCCGCCAGCCAGGTGACAGT-CG--TGTTT--AAAACTCACATGCCT-GCTCTGATCATTTCCACAGTCCCTTCAT----CTTCATCACACAGAGCCTCCTTTAGAGCACCAGGGCCTCC-ACACAGAAAGG---GGGCTGGG-------GATTAGAAGGAGAGAGAG--TGGGGCCCAGTGGGAATTTCCACTTCTGA-AG-GAG-ATCTGTGTTGTAAGTGAGA-TTGAAGACA-TTTGTATTCCAGAGGAGTTTCTCATATA---ATCTAAATTAAGGAAGGGCAGAAGCAATC-GTTCTTCAAAC--AGAAGAAGCGTTATATTCATACTTCTTAAAATTACTTCACTCCAA------------CTTAGATTCCACCTCCTCAGAATCTCT------T--GACTTGGGACTGA--------------------------------------------------------------------------------------------------GAGGGTTCTCACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3340450 467 + 108979918 GCACCCTCCAGCCAGGTGACAGC-CG--TGTTT--AAAACTCACATGCCT-GCTCTGAGCGTTTCCACCGTCCCTTCAC----CTTCATCACACAGAGCTTCCCGTAGAGCACTGGGACCTCC-ACACTCTAAGG---GGGCTGGG-------GGTTAGGAGAAGAGAGAG--TGGGGCCC-GTGGGAATTTCCACTTCTGA-AA-GAA-ATCTGTGTTGTAAGCGAGA-TTGGAGACA-TTTGTATTCCAGAGGAGTTTCTCACATA---ATCGAAATTAAGGAAGGGCAGAAGCAATC-GATCTTCAAAC--AGAAGCAGCGTT------ATACTTCTTAAAATTACTTCACTG---------------CATAGATGCCACCTCCTCAGACTCTCT------T--GACTTGGGTCTTAGAGCTCTCACTCGGCTCAGAGGCTCCTCACTGGGACTGGGACTCGGAGGCTCCTCACTGGGACTGGCCTCGGAGGCTCCTCACTGGGACTGGGACTCGGAGGCTCCTCACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5051378 377 - 111193037 GCACCCTCCAGCCAGGTGACAGC-CG--TGTTT--AAAACTCACATGCCT-GCTCTGAGCGTTTCCACCGTCCCTTCAC----CTTCATCACACAGAGCTTCCCGTAGAGCACTGGGACCTCC-ACACTCTAAGG---GGGCTGGG-------GGTTAGGAGAAGAGAGAG--TGGGGCCC-GTGGGAATTTCCACTTCTGA-AA-GAA-ATCTGTGTTGTAAGCGAGA-TTGGAGACA-TTTGTATTCCAGAGGAGTTTCTCACATA---ATCGAAATTAAGGAAGGGCAGAAGCAATC-GATCTTCAAAC--AGAAGAAGCGTTATATTCATACTTCTTAAAATTACTTCACTGCATAGATTCCACCTCCATAGATTCCACCTCCTCAGACTCTCT------T--GACTTGGGTCTTA--------------------------------------------------------------------------------------------------------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3444011 362 + 3644372 GCACCCTCCAGCCAGGTGACAGC-CG--TGTTT--AAAACTCACATGCCT-GCTCTGAGCGTTTCCACCGTCCCTTCAC----CTTCATCACACAGAGCTTCCCGTAGAGCACTGGGACCTCC-ACACTCTAAGG---GGGCTGGG-------GGTTAGGAGAAGAGAGAG--TGGGGCCC-GTGGGAATTTCCACTTCTGA-AA-GAA-ATCTGTGTTGTAAGCGAGA-TTGGAGACA-TTTGTATTCCAGAGGAGTTTCTCACATA---ATCGAAATTAAGGAAGGGCAGAAGCAATC-GATCTTCAAAC--AGAAGAAGCGTTATATTCATACTTCTTAAAATTACTTCACTG---------------CATAGATTCCACCTCCTCAGACTCTCT------T--GACTTGGGTCTTA--------------------------------------------------------------------------------------------------------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3399299 351 - 10304083 ACACCCTCCAGCCAGGTGACAGT-CG--TGTTT--AAAACTCACATGCCT-GCTCTGAGCATTTCCACTGTCCCTTCAT-------------------------------CACTGGGACCTCC-ACACGCAAAGG---GGGCTGGG-------GGTTAGGAGAAGAGAGAG--TGGGGCCC-GTGGGAATTTCCACTTCTGA-AA-GAA-ATCTGTGTTGTAAGCGAGA-TTGGAGACA-TTTGTATTCCAGAGGAGTTTCTCACATA---ATCGAAATTAAGGAAGGGCAGAAGCAGTC-GATCTTCAAAC--GGAAGAAGCGTTATATTCATACTTCTTAAAATTACTTCACTGCAA------------CTTAGATTCCACCTCCTCAGACTCTCT------T--GACTTGGGTCTTA--------------------------------------------------------------------------------------------------GAGGGTCCTCACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3501892 369 - 107702431 GCAGCCTCCAGCCAGGTGACAGC-CG--TGTTT--AAGACTCACATGCCT-GCTCTGAGCGTTTCCACCGTCCCTTCAC----CTTCATCACACAGAGCCTCCCGTAGAGCACTGGGACCTCC-ACACGAAAAGG---GGGCTGGG-------GGTTAGGAGGAGAGAGAG--TGGGGCCC-GTGGGAATTTCCACTTCGGA-AA-GAA-ATCTGTGTTGTAAGCGAGA--TGGAGACA-TTTGTGTGCCACAGGAGTTCCTCACATA---ATCGAAATTAAGGAAGGGCAGAAGCAATC-GATCTTCAAAC--AGACGAAGCGTTATATTCATACTTCTTAAAATTACTTCACTGCAA------------CTTAGATTCCACCTCCTCAGACTCTCT------T--GACTTGGGCCTTA--------------------------------------------------------------------------------------------------GAGGG-------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1032067 351 + 1565135 ACACCCTCCAGCCAGGTGACAGT-CG--TGTTT--AAAACTCACATGCCT-GCTCTGAGCATTTCCACCGTCCCTTCAT-------------------------------CACTGGGACCTCC-ACACGTAAAGG---GGGCTGGG-------GGTTAGGAGAAGAGAGAG--TGGGGCCC-GTGGGAATTTCCACTTTTGA-AA-GAC-ATCTGTGTTGTAAGCGAGA-TTGGAGACA-TTTGTATTCCAGAGGAGTTTCTCACATA---ATCGAAATTAAGGAAGGGCAGAAGCAGTC-GATCTTCAAAC--AGAAGCAGCGTTATATTCATACTGCTTAAAATTACTTCACTGCAA------------CTTAGATTCCACCTCCTCAGACTCTCT------T--GACTTGGGTCTTA--------------------------------------------------------------------------------------------------GAGGGTCCTCACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3396576 377 - 13651311 gtgccctccagccaggtgacagc-CG--TGTTT--AAAACTCACATGGCC-GCTCTGAGCATTTCCACCGCCCCTTCAT----CTTCATCACACAGAGCCTCCTGCAGAGCACTGGGACCTCC-ACACGAAAAGG---GGGCT-GG-------GGTTAGGAGAAAAGAGAG--TGGGGCCC-GTGGGAATTTCCACTTCTGG-AA-GAA-ATCTGTGTTGTAAGCGAGA-TTGGAGACA-CTTGTATTCCAGAGGAGTTTCTCACGTA---ATCGAAATTAAGGAAGGGCAGAAGCAATC-GATCTTCAAAC--AGAAGCAGCATTATATTCATACTTCTTAAAATTACTTCACTGCAA------------CTTAGATTCCACCTCCTCAGACTCTCT------T--GACTTGGGTCTTA--------------------------------------------------------------------------------------------------GAGGCTCCTCACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3485896 364 - 108792865 GCACCAGCCAGCCAGGTGACAGC-TG--TCTATTGAAAACTCACATGCCT-GCGATGGCCACTCCCACAGTCCCTTCAT----CTTCATCACACAGAGCCTCCC-TAGGGCACTGGCGCCTTC--CACAAAGAAG---GGCGTTGG-------GGTTAGGACGAGAGAGAG--TGGGGCCAGATGGGAATTTCCACTCCTGA-AA-GAA-ATCTGTGTCATCAGCAAGA-TGTGAGACA-TCTGTATTCCAGAGGAGTTTCTCACATA---ATCTCAATTAAGGAAGGGCAGAAGCAATC-GATCTTCAAAC--AGAAGCAGCGATATATTCATACTTCTTCAAATTAC-TCACTCCCA------------CTTACATTCTGCCTCCTCAGAAGCTCT------T--GACTTGGGTCTT---------------------------------------------------------------------------------------------------------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3129865 345 - 7082604 GCACCCGCCAGCCAAGTGGCAGC-TA--TCTATGGAAAACTC-----CCT-------------------GTCCCTTCAC----CGTCATCACACAGAGCCTGCC-CAGAGCACCAGAGCCTTC--CACACAGAAG---GGCATT-G-------GGTTAGGAGGAGAAAGAG--TGGGGCCAAATGGGAATTTCCACTTCTGA-AA-GAA-ATCTGTGTTGTAAGCGAGA-TTTGAAACA-TTTGTATTCCAGAGCAGTTTCTCACATA---ATCTCAATTAAGGAAGGGCAGAAGCAATC-GATCTTCACAC--AGAAGCAGCGTTATATTTATACTTCTTCAAATTACTTCACTCCCA------------CTTAGATTCTGCCTCCTCAGAAGCTCC------T--GACTTGGGTCTCA--------------------------------------------------------------------------------------------------GAG---------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 615856 371 + 5243153 GCACCCGCCAGCCAGGTGACAGC-TG--TCTGTGGAAAACTCACATGCCT-GCGATGGCCACTGCCACAGTCCGTTCAT----CTTCATCACACAGAGCCTCCC-TAGAGCTCCGGCGCCTTC--CACACAGAAG---GGTGTTGG-------GGTTAGGGGGAGAGAGAG--TGGGGCCACACGGGAATTTCCACTTCTGA-AA-GAA-ATCTGTGTTGTAAGCGAGA-TTTGAGACA-TTTGTATTCCAGAGGAGTTTCTCACATAAGGATCTCAATTAAGGAAGGGCAGAAGCAATC-GATCTTCCAAC--AGAAGCAGAGTTAT-TTCATACTTCTTCAAACTACTTCACTCCTA------------CGTAGATTCCGCCTCCTCAGAAGCTCT------T--GACTTGGGTCTTA--------------------------------------------------------------------------------------------------GAG---------- i cebCap1.NW_016107454v1 I 302 C 0 s aotNan1.NW_018509326v1 3358855 369 + 7587287 GCACCAGCCAGCCAGGTGACAGC-TG--TCTATTGAAAACTCACATGCCT-GCAACGGCCACTCCCACAGTCCCTTCAT----CTTCATCACACAGAGCCTCCC-TAGAGCACCGGCGCCTTC--CACACAGAAG---GGCGCTGG-------GGTTAGGAGGAGAGAGAG--TGGGGCCAAATGGGAATTTCCACTTCTGA-AA-GAA-ATCTGTGTTGTAAGCGAGA-TTTGAGACA-TTTGTATTCCAGAGGAGTTTCTCACATA---ATCTCAATTAAGGAAGGGCAGAAGCAATC-CATCTTCAAAC--AGAAGAAGTCTTATATTCATACTTCCTCAAATTACTTCATTCCCA------------CTTAGATTTCGCCTCCTGAGAAGCTCT------T--GACTTGGGTCTTA--------------------------------------------------------------------------------------------------GGG---------- i aotNan1.NW_018509326v1 I 312 C 0 s otoGar3.GL873658 2563969 328 + 5252280 -GAGCCTCAAACCAGCTTCTG---TG--TGTTT--AAAACTCA-GTGCCT-GACCTGACCTCTCAC---GTCTCCACAC----------CACACCGGCCCTGTT----AGCACTTCTGTCTCC-TCGGAGAAAGGAACAGGATGGG-------GGTTAGAAGGAGAGGCAG--CGGGCAGA-ATAGGAATTTCCACTTCTAA-AAGGAA-ATCTGGGTTACAGAAGAGA-TTGGAGAC------CATTCCAGGGGAGTTTCTCACCTA---ATC-----TAAGGAAGGACAGAAGAA----GATCTTCAA------CACCAGCATTTCATCCGCACTT-TCAAACTTCCGTCACTCTGA------------TGTAGACTCAGCC-CCCCAGAATCTTT------T--GACTTAGA-------------------------------------------------------------------------------------------------------------------- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91434037 328 - 120129022 -------GAGGCCAGGTGGCATC-TGCATATTT--GAAACTCTCAGGCCT-GTGGATGTCAC------------------------CGTCACACACAGCATCCTGCAGACCATGGGTGCCTTCTGTTCAGAAAGC---AGGTGGAG-------AGTGGCTAGGGGAGGGAA--GTGGACATGAGAAGGATGTCACATT---G-AG-GAA-GCCTGT-TCGCAG--AAGG-CTGGAGGTG-CCCGTACCC---AGGAGCGTCTCAGACA---GTCCAAA---------GGCAGAGTAACGT-AGACTCTGGAC--ATCTGCAGC-----ACTCATCCT--TTGAAGTTACTTCTCTCTG-------------CTCAGACTCGGCC-CCTCTGCATCTTT------T--CACATGGCTCTTG--------------------------------------------------------------------------------------------------GGAGGTCATCACT i mm10.chr12 C 0 I 1607 s canFam3.chr17 2061328 349 + 64289059 GCACCCGCAGACCAGGTAACGCCACC--TGATC--AGAACTCGCGTCCCT-GGTCC---TGCTCCCATC-CCCGTGCAT----CTTTCTCCTGCGGAGCCTCCT-TCAAACATCG----CCCT-GCACGCAGGTG---GGCTGAGC-------GGCCAGTTAGAGGGAGAG--TCGGGTGGAGTAGGAATCTCTGCTCCTAA-AG-GGACATCGAGGCTGCAAATGCGG-CAGGGGACAGCGTGTCCTCTGAGGGAGTTCCTCGCACG---ATCTAA--CAAAGAGCAGCGTAATCAGAC-AACCAT-GCGT--ACGAGGAGCATT-TATTTACACT--CGACAGCCAGTCC-------------------CGCGGAGCCAGCCCACTCAGGCTTCCTGGCCTGT--GACTTTTCT------------------------------------------------------------------------------------------------------------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 601970 389 + 2232271 ACACTCATGAACCAGGAAACATT-CATTTGTTT--AAAACTTGAATGCCTGGTTCTGATCATTCTTACA-TCCCTATGTATCTCTTCATCATGCAGAGCTTCCTTTAGAGCAACTGTGCCTTCTCTACAAAAAAG---GAGATAGGGGTACGTGGTTAGCGGGAGAGAAAAGTCATGATAGAATAGGAATTTCTACTTCTGACAG-GAA-ATCTATATTACAAACGAGATTTTGAGACA-TTTGTATTCCAGAGGAGTTTCTCACATA---ACCTAAATTAAAGAACTATGGAAGTAACCAGATCTTTAAGCTTATAAGAAGCATTTTATTCTAACTCTTTAAAGTTGTTTCTCTATGA------------CTTAGAGTCAACCCCCTCAAAATCTTT------TTAGAGTATAATTTTT--------------------------------------------------------------------------------------------------------------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=14872.000000 s hg38.chr2_KI270769v1_alt 81264 18 + 120616 GGGACTTGGG---ACTGAGAG s panTro5.chr2A 3543060 7 + 111504155 --------------CTGAGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3403805 7 + 114371477 --------------CTGAGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 281642 18 + 637652 GGGACTTGGG---ACTGAGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3077580 18 + 81552678 GGGACTTGGG---ACTGAGAG i nomLeu3.chr19 C 0 I 909 s rheMac8.chr13 3340917 17 + 108979918 GGGAC-TGGG---CCTCGGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5051755 3 - 111193037 ------------------GAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3444373 3 + 3644372 ------------------GAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3399650 18 - 10304083 GGGACTTGGG---ACTCAGAG i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 1032418 18 + 1565135 GGGACTTGGG---ACTCAGAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3396953 18 - 13651311 GGGACCTGGG---ACTCAGAG i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 602359 20 + 2232271 -TTACCTTGGAAAACTAAGAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2061677 0 + 64289059 C e saiBol1.JH378218 3130210 0 - 7082604 C e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e otoGar3.GL873658 2564297 0 + 5252280 C e cebCap1.NW_016107454v1 616227 0 + 5243153 C e aotNan1.NW_018509326v1 3359224 0 + 7587287 C e calJac3.chr14 3486260 0 - 108792865 C e chlSab2.chr14 3502261 0 - 107702431 C a score=63679.000000 s hg38.chr2_KI270769v1_alt 81282 11 + 120616 ---GGTCCTCACTT s panTro5.chr2A 3543067 11 + 111504155 ---GGTCCTCACTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3403812 11 + 114371477 ---GGTCCTCACTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 281660 11 + 637652 ---GGTCCTCACTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3078507 11 + 81552678 ---GGTTCTCACTG i nomLeu3.chr19 I 909 C 0 s rheMac8.chr13 3340934 11 + 108979918 ---GCTCCTCACTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5051758 11 - 111193037 ---GGCCCTCactg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3444376 11 + 3644372 ---GCTCCTCactg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3399668 11 - 10304083 ---GCTCCTCACTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3502261 9 - 107702431 -----TCCTCACTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1032436 11 + 1565135 ---GCTCCTCACTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3396971 11 - 13651311 ---GGTCCTCACTG i colAng1.NW_012118821v1 C 0 I 112 s saiBol1.JH378218 3130210 11 - 7082604 ---GGTCCTCACGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 616227 11 + 5243153 ---GGTCCTCATTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3359224 11 + 7587287 ---GGTCCTCACTT i aotNan1.NW_018509326v1 C 0 C 0 s canFam3.chr17 2061677 10 + 64289059 ----GTCCTCGCTC i canFam3.chr17 C 0 I 4 s dasNov3.JH580157 602379 11 + 2232271 AAAAATTACAA--- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e otoGar3.GL873658 2564297 0 + 5252280 C e calJac3.chr14 3486260 0 - 108792865 C a score=1642439.000000 s hg38.chr2_KI270769v1_alt 81293 187 + 120616 GGAC---------------------TTGGGTCTGAGAGGATCCTCACTTGGACTGGGAAAGTAG-CTGTGGTGCGCAGGTGCAAGTCCAGCAGCCA---AGCACAGACGAGGGGCCTGTGCTTGG-----------------CA--TTGGGGCAGC--------TGAGCGCAGGG-TGGTTCTGCAGTGTCTGTGGCCAGTCCTAGG-CCTCGGTGTCCTGGACCAAAG-----GTCAGAGCCCAA s panTro5.chr2A 3543078 187 + 111504155 GGAC---------------------TTGGGTCTGAGAGGATCCTCACTGGGACTGGGAAAGTAG-CTGTGGTGCGCAGGTGCAAGTCCAGCAGCCA---AGCACACACGAGGGGCCTGTGCTTGG-----------------CA--TTGGGGCAGC--------TGAGCGCAGGG-TGGTTCTGCAGTGTCTGTGGCCAGTCCTAGG-CCTCAGTGTCCTGGACCAAAG-----GTCAGAGCCCAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3403823 187 + 114371477 GGAC---------------------TTGGGTCTGAGAGGATCCTCACTGGGACTGGGAAAGTAG-CTGTGGTGCGCAGGTGCAAGTCCAGCAGCCA---AGCACACACGAGGGGCCTGTGCTTGG-----------------CA--TTGGGGCAGC--------TGAGCGCAGGG-TGGTTCTGCAGTGTCTGTGGCCAGTCCTAGG-CCTCAGTGTCCTGGACCAAAG-----GTCAGAGCCCAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 281671 187 + 637652 GGAC---------------------TTGGGTCTGAGAGGATCCTCACTTGGACTGGGAAAGTAG-CTGTGGTGCGCAGGTGCAAGTCCAGCAGCCA---AGCACAGACGAGGGGCCTGTGCTTGG-----------------CA--TTGGGGCAGC--------TGAGCGCAGGG-TGGTTCTGCAGTGTCTGTGGCCAGTCCTAGG-CCTCAGTGTCCTGGACCAAAG-----GTCAGAGCCCAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3078518 187 + 81552678 GGAC---------------------TTGGGACTGAGAGGGTCCTCACTGGGACTGGGAAAGTAG-CTGTGGTGCGCAGGTGCAAGTCCAGCAGCCA---AGCACAGACGAGGGGCCTGTGCTTGG-----------------CA--CTGGGGCAAC--------TGAGCGCAGGG-TGGTTCTGCAGTGTCTGCGGCCAGTCCCAGG-CCTCGGTGTCCTGGACCCAAG-----GTCAGAGCCCAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3340945 188 + 108979918 GGAC----------------------TGGGCCTCGGAGGCTCCTCACTGGGACTGGGAAGGGAG-CTGTGGTGCGCAGGTGCGAGTCCAGCAGCCG---AGCACAGGTGAGGGGCCTGTGCTTGG-----------------CATTTTGGGGCAGC--------TGAGCGCAGGG-TGGTTCTGCAGTGTCTGTGGCCAGTCCCAGG-CCTCGGTGTCCTGGACCAAAG-----GTCAGAGCCCAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5051769 186 - 111193037 ggac----------------------tgggactcggaggctcctcactgggactgggaagggag-ctgTGGTGCGCAGGTGCAAGGCCAGCAGCCG---AGCACAGATGAGGGGCCTGTGCTTGG-----------------CA--TTGGGGCAGC--------TGAGCGCAGGG-TGGTTCTGCAGTGTCTGTGGCCAGTCCCAGG-CCTCGGTGTCCTGGACCAAAG-----GTCAGAGCCCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3444387 186 + 3644372 ggac----------------------tgggactcagaggctcctcactgggactgggaagggag-ctgTGGTGCGCAGGTGCAAGTCCAGCAGCCA---AGCACAGGTGAGGGGCCTGTGCTTGG-----------------CA--TTGGGGCAGC--------TGAGCGCAGGG-TGGTTCTGCAGTGTCTGTGGCCAGTCCCAGG-CCTCGGTGTCCTGGACCAAAG-----GTCAGAGCCCAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3399679 187 - 10304083 GGAC---------------------TTGGGACTCAGAGGCTCCTCACTGGGACTGGGAAGGTAG-CTGTGGTGCGCAGGTGCAAGTCCAGCAGCCG---AGCACAGGTGAGGGGCCTGTGCTTGG-----------------TA--TTGGGGCAGC--------TGAGCGCAGGG-TGGTTCTGCAGTGTCTGTGGCCAGTCCCAGG-CCTCGGTGTTCTGGACCAAAG-----GTCAGAGCCCAA i cerAty1.NW_012000820v1 C 0 I 1021 s chlSab2.chr14 3502270 187 - 107702431 GGAC---------------------TTGGGACTCAGAGGCTCCTCACTGGGACTGGGAAGGGAG-CTGTGGTGCGCAGGTGCAGGTCCAGCAGCCG---AGCACAGATGAGGGGCCTGTGCTTGG-----------------CG--TTGGGGCAGC--------TGAGTGCAGGG-TGGTTCTGCAGTGTCTGTGGCCAGTCCCAGG-CCTCGGTGTTCTGGACCAAAG-----GTCAGAGCCCAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1032447 187 + 1565135 GGAC---------------------TTGGGACTCAGAGGCTCCTCACTGGGACTGGGAAGGTAG-CTGTGGTGCGCAGGTGCAAGTCCAGCAGCCG---AGCACAGGTGAGGGGCCTGTGCTTGG-----------------CA--TTGGGGCAGC--------TGAGTGCAGGG-TGGTTCTGCAGTGTCTGTGGCCAGTCCCAGG-CCTCGGTGTTCTGGACCAAAG-----GTCAGAGCCCAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3397094 187 - 13651311 GGAC---------------------TTGGGACTCAGAGGGTCCTCACTGGGACTGGGAAGGTAG-CTGTCGTGCGCAGGTGCAAGTCCAGCAGCCG---AGCACAGATGAGGGGCCTGTGCTTGG-----------------CA--TTGGGGCAGC--------TGAGCGCAGGG-TGGTTCTGCAGTGTCTGTGGCCAGTCCCAGG-CCTCGGTGTCCTGGACCAAAG-----GTCAGAGCCCAA i colAng1.NW_012118821v1 I 112 C 0 s calJac3.chr14 3486260 168 - 108792865 -------------------------------------GGA-CTGCACTTGGACTAGGAAAGTAG-CT-TGGTGCCCATGTGCAATTCCAGCAGCCA---AGCACAAACGAGGGGCATGTGGGTGG-----------------CA--TGGGGGCAGC--------TGAGCACAGGG-CGGTTCTACAGTGTC-GTGGTCAGTCCCTGG-CCTCAGTGTTCTGGACTGAAA-----GGCAGAGCCAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3130221 171 - 7082604 GGAC---------------------GTGGGTCTTGGAGGA-CCACAC-TGGACTGGGAAAGCAG-CT-TGGCGC------------ACAGCAGCCA---AGCACAGACGAGGGGCATGTGCGTGG-----------------CA--TGGGGGCAGC--------TGAGCACAGGG-CGGTTCTACGGTGTC-GTGGTCAGTCCCAGG-CCTCAGTGTCCTGGACCGAAA-----GGCAGAGCCGAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 616238 171 + 5243153 GGAC---------------------GTGGGTCTTAGAGGA-CCGCAC-TGGACTGGGAAAGCAG-CT-TGGTGC------------ACAGCAGCCA---AGCACAGACGAGGGGTGTGTGTGTGG-----------------TG--TGGGAGCAGC--------TGAGCACAGGG-CGGTTCTACAGTGTC-GTGGTCAGTCCCAAG-CCTCAGTGTCCTGGACCGAAG-----GGCAGAGCTGAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3359235 184 + 7587287 GGAC---------------------GTGGGTCTTAGAGGA-CCGCACTTGGACTGGGAAAGTAG-CT-TGGTGCGCAGGTGCAAGTCCAGCAGCCA---AGCACAGACAAGGGGCATGTGCGTGG-----------------CA--TGGGGGCAGC--------TGAGCACAGGG-CGGTTCCACAGTGTC-ATGGTCAGTCCCAGG-CCTCAGTGTCCTGGACCGAAG-----GGCAGAGCCGAA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2564297 193 + 5252280 ---------------------------GGGTGTTAGAGGGTTTTCATTCATCCCAGGAAAGCAG-CT-TTGTCCTGATGTGAACATCCAGGGACCG---A-TGCCGACTAGGGACTTCTGCCCCGGCCAGGAAAGCTGTGAACC--CGTGGCCGGC--------TGAATCCATGGCTGGCTCCCC-----CTGCCCTCAGGTCCAGGTCCTTGGTGCCCTGGAACAAAG-----TTGAGAGCAAAA i otoGar3.GL873658 C 0 I 1 s canFam3.chr17 2061691 159 + 64289059 GAGA---------------------GCAGGTCCCAGGGTGCTGTCCCTCACAGCAGGAAAGGAGCCTTTTGTGCTCCAGTG-AGGTCCAGGAGCCC---AGGGCACATGAGCGAC---------------------------CA--C--------C--------TGAGAGCAGGT-CCACCACGCTG----------CAGACCAGGG-TCCCTGGGTCCCGGCCAAGAG-----CTGGGGGCAGAC i canFam3.chr17 I 4 C 0 s dasNov3.JH580157 602390 199 + 2232271 AAACTACATAGCCTAAAAAGCATTGTTTGGTCTTAAATGGCCATCACTTGCACCTGGGATGTAGCCTTTTGTGCTAGAATGAAAGGCCAAAATTGATACAGCTGTAACAAAGAGGCTGTGACTGT-----------------CC--TTGAGGCTTCACCCACTTCCAGAGCAGGA-----------------------AGTCTCCGG-TAT-GGTGTATGAAAGCAAAGAAAGAGTGAGAACC--- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=784271.000000 s hg38.chr2_KI270769v1_alt 81480 86 + 120616 GGTGATCAGGCAGGAGAAAGCCTCAGCCACTGCAGGAGTGGTGGGAA--G-TTGGGAT-AAACCAGCCACCCCAGGCA----GGACGAAGGGGG- s panTro5.chr2A 3543265 86 + 111504155 GGTCATCAGGCAGGAGAAAGCCTCAGCCACTGCAGGAGTGGTGGGAA--G-TTGGGAT-AAACCGGCCACGCCAGGCA----GGACGAAGGGGG- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3404010 86 + 114371477 GGTCATCAGGCAGGAGAAAGCCTCAGCCACTGCAGGAGTGGTGGGAA--G-TTGGGAT-AAACCGGCCACGCCAGGCA----GGACGAAGGGGG- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 281858 86 + 637652 AGTGATCAGGCAGGAGAAAGCCTCAGCCACTGCAGGAGTGGTGGGAA--G-TTGGGAT-AAACCGGCCACCCCAGGCA----GGACGAAAGGGG- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3078705 87 + 81552678 GGTGATCAGGCAGGAGAAAGCCTCAGCCACTGCAGGAGTAGTGGGAA--GCCTGGGAT-AAACCAGCCGCCCCAGGCA----GGACGAAGGGGG- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3341133 87 + 108979918 AGTGATCAGGCAGGAGAAAGCCTCCGCCGCTGCAGGAGTGGTGGGGA--GTCTGGGAT-AAACCAGCCGCCCCAGGCA----GGACGAAGGGGG- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5051955 87 - 111193037 AGTGATCAGGCAGGAGAAAGCCTCCGCCGCTGCAGGAGTGGTGGGAA--GTCTGGGAT-AAACCAGCCGCCCCAGGCA----GGACGAAGGGGG- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3444573 87 + 3644372 AGTGATCAGGCAGGAGAAAGCCTCCGCTGCTGCAGGAGTGGTGGGAA--GTCTGGGAT-AAACCAGCCGTCCCAGGCA----GGACGAAGGGGG- i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3502457 87 - 107702431 AGTGATCAGGCAGGAGAAAGCCTCCGCCGCTGCAGGAGTGGTGGGAA--GTCTGGGAT-AAACCAGCCGCCCCAGGCA----GGACGAAGGGGG- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1032634 84 + 1565135 AGTGATCAGGCAGGAGAAAGCCTCCGCCGCTGCAGGAGTGGTGGGAA--GTCTGGGAT-AAACCA---GCCCCAGGCA----GGACGAAGGGGG- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3397281 87 - 13651311 AGTGATCAGGCAGGAGAAAGCCTCAGCCGCTGCAGGAGGGGTGGGAA--GTCTGGGAT-AAACCAGCCGCCCCAGACA----GGATGAAGGGGG- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3486428 87 - 108792865 GGTCATCAGGCAGGAGAAAGCCTCAGCCACTGCGGGAGCGGTGGGAA--GTCTGGGAT-AAACCAGCCACCCCAGGCA----GGATGAATGGGG- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3130392 87 - 7082604 GGTCAGCAGGCAGGAGAAAGCCTCAGCCACCGCAGGAGCGGCAGGAA--GTCTGGGAT-GAACCAGCCACCCCAGGCA----GGACGAAGCGGG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 616409 87 + 5243153 GGTCATCAGGCGGGAGAAAACCTCAGCCACCACGGGAGTGGTGGGAA--GTCTGGGAT-AAACCAGCCACCCCAGGCA----GGATGAAGGGGA- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3359419 87 + 7587287 GGTCATCAGGCAGGAGAAAGCCTCAGCCGCCGCGGGAGCAGTGGGAA--GTCTGGGAT-AAACCAGCCACCCTAGGCA----GGACGAAGGGGG- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2564491 81 + 5252280 AAAGAGCAGGCATGAG--------TGTCGGTGATAGCAAGGTGACAGCTGTCCAGGGA-CACCCAGCCGCCCATAGTG----GGAAGATGAGAG- i otoGar3.GL873658 I 1 I 1084 s canFam3.chr17 2061850 87 + 64289059 AGTGACCAGGCAGGG--AAGCCTCCACCGCGGC-GGAGTTCAGGAAG--CGCCAGGTA-AAAGCAGTC-TCCCGGGCAGCGTGGACTAAAGCAG- i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 602589 93 + 2232271 AGTGATCCAACAAGAGAAAGCCCTAACTGCAGCAGGAATAACAGGAA--GCTCAGGGTAAAAATAGTTATCTAAGACAACAAGGGCAAAAGCAGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cerAty1.NW_012000820v1 3399866 1021 - 10304083 I a score=68716.000000 s hg38.chr2_KI270769v1_alt 81566 9 + 120616 ACGGGATGC s panTro5.chr2A 3543351 9 + 111504155 ACGGGATGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3404096 9 + 114371477 ACGGGATGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 281944 9 + 637652 ACGGGATGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3078792 9 + 81552678 ACGGGATGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3341220 9 + 108979918 ATGGGATGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5052042 9 - 111193037 ATGGGATGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3444660 9 + 3644372 ATGGGATGC i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3502544 9 - 107702431 ATGGGATGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1032718 9 + 1565135 ATGGGATGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3397368 9 - 13651311 ATGGGATGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3486515 9 - 108792865 ATGGGACGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3130479 1 - 7082604 A-------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 616496 9 + 5243153 AGGGGATGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3359506 9 + 7587287 ACGGGATGC i aotNan1.NW_018509326v1 C 0 C 0 s canFam3.chr17 2061938 9 + 64289059 AAGTGATGC i canFam3.chr17 I 1 I 244 s dasNov3.JH580157 602682 9 + 2232271 AAATGAGGC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e otoGar3.GL873658 2564572 1084 + 5252280 I e cerAty1.NW_012000820v1 3399866 1021 - 10304083 I a score=538728.000000 s hg38.chr2_KI270769v1_alt 81575 61 + 120616 AGGACCACTCACCGCTATGGCTGAGAGGACCTCAGCAAGAACCAAGGTCACCTCTGACCGA s panTro5.chr2A 3543360 61 + 111504155 AGGACCACTCACCGCTATGGCCGAGAGGACCTCAGCAAGGACCAAGGTCACCTCTGACCGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3404105 61 + 114371477 AGGACCACTCACCGCTATGGCCGAGAGGACCTCAGCAAGGACCAAGGTCACCTCTGACCGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 281953 61 + 637652 AGGACCACTCACCGCTATGGCTGAGAGGACCTCAGCAAGAACCAAGGTCACCTCTGACCGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3078801 61 + 81552678 AGGACCACTCAATGCTATGGCTGAGAGGACCTCAGCAAGAACCAAGGTCACCGCTGACCGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3341229 61 + 108979918 AGGACCACCCAATGCTATGGCTGAGAGGACCTCAGCAAGAACCAAGGTCACCTCTGACCGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5052051 61 - 111193037 AGGACCACCCAATGCTATGGCTGAGAGGACCTCAGCAAGAACCAAGGTCACCTCTGACCGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3444669 61 + 3644372 AGGACCACCCAATGCTATGGCTGAGAGGACCTCAGCAAGAACCAAGGTCACCTCTGACCGA i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3502553 61 - 107702431 AGGACCAGTCAATGCTATGGCTGAGAGGACCTCAGCAAGAACCAAGGTCACCTCTGACCGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1032727 61 + 1565135 AGGACCACTCAATGCTGTGGCTGAGAGGACCTCAGCAAGAACCAAGGTCACCTCTGACCGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3397377 60 - 13651311 AGGACCACTCAATGCTATGGCTGAGAGGACCTCAGCAAGAACCAAGGTCACCTCTG-CTGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3486524 61 - 108792865 CGGACCGGTCAGCGCTGTGGCTGAGAGGGCCTCAGAAAGAACTAAGGTCAACTCTGACCCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3130480 56 - 7082604 -----CAGCCAACGCTGTGGCTGAGAGGGCCTCAGCAGGAACCGAGGTCACCTCTGACCCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 616505 61 + 5243153 AGGACCAGTCAACACCGTGGCTGAGAGGACTTCAACAAGAACCAAGGTCACCTCTGACCCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3359515 61 + 7587287 AGGACCAGTCAACGCTGTGGCTGAGAGGACCTCAGCAAGAACCAAGGTCACCTCTGACCCA i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 602691 60 + 2232271 AGAATCATTCAATTTTATAACTAGAAGGACTTCA-TGAAAATGAAGGGGACCTTTGACGGA i dasNov3.JH580157 C 0 I 3158 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2061947 244 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e otoGar3.GL873658 2564572 1084 + 5252280 I e cerAty1.NW_012000820v1 3399866 1021 - 10304083 I a score=2503891.000000 s hg38.chr2_KI270769v1_alt 81636 306 + 120616 GTTCCCAGAGAGCAGGAACCCAGGGCAGGGTGGGGAGACGCTGAGGTGGAAGAAGGGAAGGAAGGGCCAGGGAAGCGCTGTGAAGCTGGGAAAGACTTGAGCACGTTTTACAGAGGGGCACGACCCCAGGCTCCAGGAGGGGTGCGGGCACCTTGACCGTCTCGACGAGGAGGGTGGTTTTACGCACACAGCCACGTACCAGCATCCCTCAGGTTGTACGATCTGAAGACATGCAGGTTCCTGTACATCAGCCATAGCTCAACAGAGACCTTCAAATAGAAAAAGAAGAGACTGACTTCTGGCTGC s panTro5.chr2A 3543421 306 + 111504155 GTTCCCAGAGAGCAGGAACCCAGGGCAGGGTGGGGAGACGCTGAGGTGGAAGAAGGGAGGGAAGGGCCAGGGAGGCGCTGTGAAGCTGGGAAAGACTTGAGCACGTTTTACAGAGGGGCACGACCCCAGGCTCCAGGAGGGGTGCGGGCACCTTGACGGTCTCGACCAGGAGGGTGGTTTTACGCACACAGCCACGTACCAGAATCCCTCAGGTTGTACGGTCTGAAGACATGCAGGTTCCTGTACATCAGCCATAGCTCAACAGAGACCTTCAAATAGAAAAAGAAGAGACTGACTTCTGGCTGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3404166 306 + 114371477 GTTCCCAGAGAGCAGGAACCCAGGGCAGGGTGGGGAGACGCTGAGGTGGAAGAAGGGAGGGAAGGGCCAGGGAGGCACTGTGAAGCTGGGAAAGACTTGAGCACGTTTTACAGAGGGGCACGACCCCAGGCTCCAGGAGGGGTGCGGGCACCTTGACGGTCTCGACCAGGAGGGTGGTTTTACGCACACAGCCACGTACCAGAATCCCTCAGGTTGTACGGTCTGAAGACATGCAGGTTCCTGTACATCAGCCATAGCTCAACAGAGACCTTCAAATAGAAAAAGAAGAGACTGACTTCTGGCTGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 282014 306 + 637652 GTTCCCAGAGAGCAGGAACCCAGGGCAGGGTGGGGAGACGCTGAGGTGGAAGAAGGGAGGGAAGGGCCAGGGAGGCGCTGTGAAGCTGGGAAAGACTTGAGCACGTTTTACAGAGGGGCACGACCCCAGGCTCCAGGAGGGGTGCGGGCACCTCGACCGTCTCGACCAGGAGGGTGATTTTACGCACACAGCCACGTACCAGCATCCCTCAGGTTGTACGATCTGAAGACATGCAGGTTCCTGTACATCAGCCATAGCTCAACAGAGACCTTCAAATAGAAAAAGAAGAGACTGACTTCTGGCTGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3078862 306 + 81552678 GTTCCCAGAGGGCAGGAACCCAGGGCAGGGTGGGGAGATGCTGAGGTGGAAGAAGGGAAGGAAGGGCCAGGGAGGCACTGTTAAGCTGGGAAAGACTTGAGCACGTTTTACAGAGGGGCACGACCCCAGGCTCCAGGAGGGGTGCGGGCACCTTGACCGTCTCAACCAGGAGGGTGGTTTTATGCACACAGCCATGTACCAGAATCCCTCAGGTTGTACATTCTGAAGACGTGCAGGTTCCTGTGCTTCAGCCATAGCTCAACAGAGACCTTCAAACAGAAAAAGAAGAGACTGACTTCTGGCTGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3341290 306 + 108979918 GTTCCCAGAGGGCAGGGACCCAGGGCAGGGTGGGGAGACGCTGCGGTGGAAGAAGGGAAGGAAGGGTCAGGGAGGCACTGTGAAGCTGGGAAAGACTTGAGCATGTTTTACAGAGGGGCATGACCCCAGGCTCCAGGAGGGATGCGGGCACCTTGACCGTCTCAACCAGGAGGGTAGTTTTACACACACAGCCACGTACCGGAACCCCTCAGGTTGTACAGTCTGAAGACATGCAGGTTCCTGTGCATCAGCCACAGCTCAACAGAGACGTTCAAATAGAGAAAGAAGAGACTCACTTGTGGCTGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5052112 306 - 111193037 GTTCCCAGAGGGCAGGGACCCAGGGCAGGGTGGGGAGACGCTGCGGTGGAAGAAGGGAAGGAAGGGTCAGGGAGGCACTGTGAAGCTGGGAAAGACTTGAGCATGTTTTACAGAGGGGCATGACCCCAGGCTCCAGGAGGGATGCGGGCACCTTGACCGTCTCAACCAGGAGGGTAGTTTTACACACACAGCCACGTACCAGAACCCCTCAGGCTGTACAGTCTGAAGACATGCAGGTTCCTGTGCATCAGCCACAGCTCAACAGAGACGTTCAAATAGAGAAAGAAGAGACTCGCTTGTGGCTGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3444730 306 + 3644372 GTTCCCAGAGGGCAGGGACCCAGGGCAGGGTGGGGAGACGCTGCGGTGGAAGAAGGGAAGGAAGGGTCAGGGAGGCACTGTGAAGCTGGGAAAGACTTGAGCATGTTTTACAGAGGGGCATGACCCCAGGCTCCAGGAGGGATGCGGGCACCTTGACCGTCTCAACCAGGAGGGTAGTTTTACACACACAGCCACGTACCAGAACCCCTCAGGTTGTACAGTCTGAAGACATGCAGGTTCCTGTGCATCAGCCACAGCTCAACAGAGACGTTCAAATAGAGAAAGAAGAGACTCACTTGTGGCTGC i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3502614 306 - 107702431 GTTCCCAGAGGGCAGGGACCCAGGGCAGGGTGGGGAGACGCTGAGGTGGAAGAAGGGAAGGAAGGGTCAGGGAAGCACTGTGAAGCTGGGAAAGACTTGAGCATGTTTTACAGAGGGGCATGACCCCAGGCTCCAGGAGGGATGCGGGCACCTTGACCGTCTCAACCAGGAGGGTCGTTTTACACACACAGCCACGTACCAGAATCCCTCAGGTTGTACAGTCTGAAGACGTGCAGCTTCCTGTGCATCAGCCATAGCTCAACAGAGACATTCAAATAGAGAAAGAAGAGACTCACCTCTGGCTGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1032788 305 + 1565135 GTTCCCAGAGGGCAGGGACCCAGGGCAGGGTGGGGAGACGCTGCAGTGGAAGAAGGGAAGGAAGGGTCAGGGAAGCACTGTTAAGCTGGGAAAGACTTGAGCATGTTTTACAGAGGGGCATGACCCCAGGCTCCAGGAGGGATGCGGGCACGTTGACTGTCTCAACCAGGAGGGTAGTTTT-CACACACAGCCACGTACCAGAACCCCTCAGGTTGTACAGTCTGAAGACATGCAGGTTCCTGTGCATCAGCCACAGCTCAACAGAGACGTTCAAATAGAGAAAGAAGAGACTCACTTGTGGCTGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3397437 306 - 13651311 GTTCCCAGAGGGCAGGGACCCAGAGCAGGGTGGGGAGACGCTGAGGTGGAAGAAGGGAAGGAAGGGTCAGGGAGGCACTGTGAAGCTGGGAAAGACTTGAGCATGTTTTACAGAGGGGCATGACCCCAGGCTCCAGGAGGGATGCGGGCACCTTGACCGTCTCAACCAGGAGGGTAGTTTTACACACACAGCCACGTACCAGAATCCCTCAGGTTGTACAGTCTGAAGACATGCAGGTTCCTGTACATCAGCCATAGCTCAACAGAGACATTCAAACAGAAAAAGGAGAGACTCACTTCTGGCTGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3486585 294 - 108792865 GTTCCCAGAGGGCAGGGACCCAGGGCAGGGTGGAGAGACACCGCAATGGAGGAAGGGAAGTAAGGGCCAGGGAGGCTCTGTTAAGCTGGGAAAGACCTGAGCGTGTTTTATGGAGGGATACGGCTCCAGGC-------GGGGTGCAGGCACCTTGACCGTCTCAACCAGGAGGGTGGTTTTATGCACACGGCCGTATACCAGAATCCCTCAGGTTGT--AGTCTGAAGACATGTAGGTTCCTGTGCATCAGCCATAGCTCAGCAGAGAGCTGCAGACAGAAA---AAGAGACTGACTGCTGGCTGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3130536 279 - 7082604 GTTCCCAGAGGGCAGGGACACCGGGCAGGG-GGATAGACACCGCGGTGGAGGGAGAGAAGGAAGGGCCAGGGAGGCGCTGTTAAGCTGGGAAAGACCTGAGCGTGTTTTACAGAGGGACACGGCTCCAGG--------------------------CCGTCTCAGCCAGGAGGGTGGTTTCATGCGCACGGCCGTATACCAGAATCCCTCAGTTTGTACAGTCTGAAGACATGCAGGTTCCTGTGCCTCAGCCATAGCTCAGCGGAGACCTTCGGACAGAAAAATAAGAGACTGACTGCTGGCTGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 616566 290 + 5243153 GTTCCCAGAGGGCAGGGACCCAGGGCAGGG-TGGGAGACGCTGCAGTGGAGAAGGGGAAGGGCAGGCCAGGGAGGCGCTGTTAAGCTGGGAAAGACCTCAGCATGTTTCACGGAGGGACACAGCTCCCAGC-------GGGGTGCAGGCACCTTGACTGTCTCAACCAGGAGGGTGGTTTTATGCACACGGCCATGTACCAGAATCCCTCAGCTTGT--AGTCTGAAGACATGCAGGTTCCTGTGCATC------AGCTCAACGGAGACCTTCAGACAGGAAAAGAAGAGACTGACTGCTGGCTGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3359576 299 + 7587287 GTTCCCAGAGGGCAGGGACCCAGGGCAGGGTAGGGAGACACCATGGTGGAGGAAGAGAAGGAAGGGCCAGGGAGGCGCTGTTAAGCTGGGAAAGACCTGAGCGTGTTTTATGGAGGAGCACGGCTCCAGGC-------CGGGTGCAGTCACCTTGACCATCTCGACCAGGAGGGTGGTTTTATGCACACGGCCATATACCAGAATCCCTCAGGCTGTACAGTCTGAAGACATGCAGGTTCCTGTGCATCAGCCATAGCTCAGCGGAGACCTTCAGACAGAAAAAGAAGAGGCTGACTGCTGGCTGC i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2061947 244 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 602751 3158 + 2232271 I e otoGar3.GL873658 2564572 1084 + 5252280 I e cerAty1.NW_012000820v1 3399866 1021 - 10304083 I a score=626602.000000 s hg38.chr2_KI270769v1_alt 81942 75 + 120616 CAGCCTGAGCCGTGGAGTGTGCTGGCTACAGTCAGGGAAAGAGTGGGGAGAGCGTCCTCCAGCCCCTGCCACCCT s panTro5.chr2A 3543727 75 + 111504155 CAGCCTGAGCCGTGGAGTGTGCTGGCTACAGTCAGGGAAAGAGTGGGGAGAGCGTCCCCCAACCCCTCCCACCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3404472 75 + 114371477 CAGCCTGAGCTGTGGAGTGTGCTGGCTACAGTCAGGGAAAGAGTGGGGAGAGCGTCCCCCAGCCCCTCCCACCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 282320 75 + 637652 CAGCCTGAGCCGTGGAGTGTGCTGGCTACGGTCAGGGAAAGAGTGGGGAGAGCGTCCTCCAGCCCCTGCCACCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3079168 74 + 81552678 CAGCCCGAGCCGT-GAGTGTGCTGGCTACGGTCAGCGAAAGAGTGGGGAGAGCGTCCCCTAGCCCCTGCCACCCT i nomLeu3.chr19 C 0 M 1269 s rheMac8.chr13 3341596 75 + 108979918 CACCCTGAGCCGGGGAGTGTGCTGGCTCCGGTCAGGGAAAGAGTGGGGAGAGCGTCCCCCAGCCCCTGCCACCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5052418 75 - 111193037 CACCCTGAGCCGGGGAGTGTGCTGGCTCCGGTCAGGGAAAGAGTGGGGAGAGCGTCCCCCAGCCCCTGCCACCCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3445036 75 + 3644372 CACCCTGAGCCGGGGAGTGTGCTGGCTCCGGTCAGGGAAAGAGTGGGGAGAGCGTCCCCCAGCCCCTGCCACCCT i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3502920 75 - 107702431 CACCCTGAGCCGGGGAGTGTGCTGGCTCCGGTCAGGGAAAGAGTGGGGAGAGCGTCCCCCAGCCCCTGCCACCCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1033093 75 + 1565135 CACCCTGAGCCGTGGAGTGTGCTGGCTCCGGTCAGGGAAAGAGTGGGGAGAGCGTCCCCCAGCCCCTGCCACCCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3397743 75 - 13651311 CACCCTGAGCCGTGGAGTGTGCTGGCTATGGTCAGGGAAAGAGTAGGGAGAGCATCCCCCAGCCCCTGCCACCCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3486879 75 - 108792865 CAGCCTGAGGCATGGAGTGTGCCGGCTGTGGCCAGGGAAAGGGTGGGGAGAGCATCCCGAGGCCCCTGCCACCCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3130815 75 - 7082604 CAGCCTGAGGCGTGGAGGGTGCCGGCTGCGGCCAGGGATAGGGTGGGGAGGGCACCCTGCGGCCCCTGCCACCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 616856 75 + 5243153 CAGCCTGAGGCGTGGAGGGTGCCGGCCGCGGCCAGGGAAAGGGTGGGGAGAGCGTCCAGCAGCTGCTGCCACCAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3359875 75 + 7587287 CAGCCCGAGGCGTGGAATGTGCCGGCTGCGGCCAGGGAAAGGGTGGGGAGAGCGTCCCGCAGCCCCTGCCACCGT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2565656 58 + 5252280 cagccggttctagtgagtctgctggct-------gggAAAGTGTGGAAAAG---------AGGCCCTGCCATCC- i otoGar3.GL873658 I 1084 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2061947 244 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 602751 3158 + 2232271 I e cerAty1.NW_012000820v1 3399866 1021 - 10304083 I a score=331903.000000 s hg38.chr2_KI270769v1_alt 82017 47 + 120616 GTGAGGCCTCATCATGCT-gatgtgacaccgaagtgcaagcaaaaaga s panTro5.chr2A 3543802 47 + 111504155 GTGAGGCCTCATCATGCT-gatgtgacatcgaagtgcaagcaaaaaga i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3404547 47 + 114371477 GTGAGGCCTCATCATGCT-gatgtgacaccgaagtgcaagcaaaaaga i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 282395 47 + 637652 GTGAGGCCTCATCATGCT-gatgtgacaccgaagtgcaagcaaaaaga i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3341671 47 + 108979918 GTCAGGCCTCATCATCCT-gatgtgacaccaaagtgcaaggaaaatgg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5052493 47 - 111193037 GTCAGGCCTCATCATCCT-gatgtgacaccaaagtgcaaggaaaacgg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3445111 47 + 3644372 GTCAGGCCTCATCATCCT-gatgtgacaccaaagtgcaaggaaaaagg i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3502995 47 - 107702431 GTCAGGCCTCATCATCCT-gatgtgacaccaaagtgcaaggaaaaagg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1033168 47 + 1565135 GTCAGGCCTCATCATCCT-gatgtgacaccaaagtgcaaggaaaaagg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3397818 47 - 13651311 GTCAGGCCTCATCATCCT-gatgtgacaccaaagtgcaaggaaaaggg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3486954 48 - 108792865 GTCAGGCCTCATCAtcctggatgtgacaccaaagtgcaaggaaaaaga i calJac3.chr14 C 0 I 69 s saiBol1.JH378218 3130890 48 - 7082604 GTCAGGCCTCGTCAtcctggatgtgacacccaagtgcaagcaaaacaa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 616931 48 + 5243153 GTCAGGCCTCATCAtcctggatgtgacaccaaagtgcaagcaaaacaa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3359950 48 + 7587287 GTCAGGCCTCGTCAtcctggatgtgacaccaaagtgcaagcaaaacaa i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2565714 31 + 5252280 ------CATCATGGTCCC-GACGTGACTC-------CAGGGAAAA--- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2061947 244 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 602751 3158 + 2232271 I e cerAty1.NW_012000820v1 3399866 1021 - 10304083 I e nomLeu3.chr19 3079242 1269 + 81552678 M a score=387719.000000 s hg38.chr2_KI270769v1_alt 82064 73 + 120616 aaatgtaggtaagtgggatttcaccaaaactaaaaactgttgtgctttaaaggacaccataaagaaaaagtaa s panTro5.chr2A 3543849 73 + 111504155 aaatgtaggtagatgggatttcaccaaaactaaaaactgttgtgctttaaaggacaccataaagaaaaagtaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3404594 73 + 114371477 aaatgtaggtagatgggatttcaccaaaactaaaaactgttgtgctttaaaggacaccgtaaagaaaaagtaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 282442 72 + 637652 aaatgtaggtaagtgggatttcaccaaaactaaaaactgttgtgctttaaaggacaccgtaaag-aaaagtaa i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3341718 73 + 108979918 aaatgcacgtaaaggaggtttcaccgaaactaaaaactgttgtgctttaaaggacaccataaagaaaaagtaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5052540 73 - 111193037 aaatgcacgtaaaggaggtttcaccgaaactacaaactgttgtgctttaaaggacaccataaagaaaaagtaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3445158 73 + 3644372 aaatgcaggtaaaggaggtttcaccaaaactaaaaactgttgtgctttaaaggataccataaagaaaaagtaa i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3503042 73 - 107702431 aaatgcaggtaaaggaggtttcaccaaaactaaaaactgttgtgctttaaaggataccataaagaaaaagtaa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1033215 73 + 1565135 aaatgcaggtaaaggaggtttcaccaaaactaaaaactgttgtgctttaaaggataccataaagaaaaagtaa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3397865 73 - 13651311 aaatgcaggtaaaggagatttcaccaaaactaaaaactgttgtgctttaacggataccataaagaaaaagtaa i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3130938 65 - 7082604 -aaaagagataaatgggatttcaccacaactaaaagctgtcgtgctttaa-----accgtaaggaaaaggt-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 616979 65 + 5243153 -aaaagaggtaaatgggatttcaccacaactgaaagctgctgtgctttaa-----accgtaag--aaaggtaa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3359998 66 + 7587287 --aaagaggtcaatgggattttaccacaactaaaaagtgttgtgctttaa-----accataaagaggaggtaa i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2565745 66 + 5252280 ACCTACGGGCA----GGACTCCGGCACAACATGAAACC-CCACGCTTCAGAGGACATCGTGAAG--AAAGTGA i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2061947 244 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 602751 3158 + 2232271 I e calJac3.chr14 3487002 69 - 108792865 I e cerAty1.NW_012000820v1 3399866 1021 - 10304083 I e nomLeu3.chr19 3079242 1269 + 81552678 M a score=2241531.000000 s hg38.chr2_KI270769v1_alt 82137 339 + 120616 aaagacaacctatggcatgggagacattgcttgcaaa--tcccgtatctgataagagacttacatccagaatatatgaagaactcttacagctgctaaattaaaa-aCGATTCATGGCACTAGCAtgcagcagg-ggagagactggactcaactctgacttcacggaggacaggtgggaactgacaaccagggac-----cagggtcagggtcagcgtccctggttggaaaatcacccagaggaagcttcaagaaggggtttctggccaagcagacttgataggatcgttgctgacagccggccagggtggtaggatctccaggtgctaagacaccgagggcggggac s panTro5.chr2A 3543922 339 + 111504155 aaagacaacctacggcatgggagacattgcttgcaaa--tcccgtatctgataagagacttacatccagaatatataaagaactcttacagctgctaaattaaaa-aTGATTCATGGCACTAGCAtgcagcagg-ggagagagcggactcaactccgacttcacggaggacaggtgggaactgacaaccagggac-----cagggtcagggtcagggtccatggttggaaaattacccagaggaagcatcaagaaggggtttctggccaagcagacttgataggatcgttgctgacagccggccagggtggtaggatctccgggtgctaagacaccgagggcggggac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3404667 339 + 114371477 aaagacaacctacggcatgggagacattgcttgcaaa--tcccgtatctgataagagacttacatccagaatatataaagaactcttacagctgctaaattaaaa-aTGATTCATGGCACTAGCAtgcagcagg-ggagagactggactcaactccgacttcacggaggacaggtgggaactgacaaccagggac-----cagggtcagggtcagggtccatggttggaaaattacccagaggaagcatcaagaaggggtttctggccaagcagacttgataggatcgttgctgacagccggccagggtggtaggatctccgggtgctaagacaccgagggcggggac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 282514 338 + 637652 aaagacaacctacggcatgggagacattgtttgcaaa--tcccgtatctgataagagacttacatccagaatatataaagaactcttacagctgctaaatt-aaa-acgaTTCATGGCACTAGCAtgcagcagg-ggagagactggactcaactccgacttcacggaggaccggtgggaactgacaaccagggac-----cagggtcagggtcagggtccgtggttggaaaattacccagaggaagcatcaggaaggggtttctggccaagcagacttgataggatcgttgctgacagccggccagggtggtaggatctcagggtgctaagacaccgagggcggggac i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3341791 341 + 108979918 aaagaccacctacagaatgggagaaattatttgcaaa--tcgtgtatctgacaagagacttacatccagaatctataaagagctctgacagctgctaaagaaaaacacaaTGCATGGCAGTAGCAtgcagaaggcgaagagactggactcaactccgacttcacggaggacaggtgggaattgacagccagggac-----cagggtcagggtcagggtcagtggatggaaaattacccagaggaagcatcaagaaggggtttctggccaagcagacttgataggatcgtcgctgacagctggccagagtagtaggatctccaggtgttaaggcaccaagggcagggat i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5052613 341 - 111193037 aaagaccacctatagaacgggagaaattatttgcaaa--tcgtgtatctgacaagagacttacatccagaatctataaagagctctgacagctgctaaagaaaaaaacaaTGCATGGCAGTAGCAtgcagaaggcgaagagactggactcaactccgacttcacggaggacaggtgggaattgacaaccagggac-----cagggtcagggtcagggtcagtggatggaaaattacccagaggaagcatcaagaaggggtttctggccaagcagacttgataggatcgtcgctgacagctggccagagtggtaggatctccaggtgttaaggcaccaagggcagggat i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3445231 341 + 3644372 aaagaccacctacagaatgggagaaattatttgcaaa--tcgtgtatctgacaagagacttacatccagaatctataaagagctctgacagctgctaaagaaaaaaacaaTGCATGGCAGTAGCAtgcagaaggcgaagagactggactcaactccgacttcacggaggacaggcgggaattgacaaccagggac-----cagggtcagggtcagggtcagtggatggaaaattacccagaggaagcatcaagaaggggtttctggccaagcagacttgataggatcgtcgctgacagctggccagagtagtaggatctccaggtgttaaggcaccaagggcagggat i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3503115 340 - 107702431 aaagaccacctacagaatgggagaaattatttgcaaa--tcctgtatctgacaagagactgacatccagaatctataaagagctctgacagctgctaaagaaaac-acaaCGCATGGCACTAGCATGCAGACGGCGAagagactggactcagctccgacttcacggaggacaggcgggaactgacaaccagggac-----cagcatcagggtcagggtcagtgggtggaaaattacccagaggaagcatcaagaaggggtttctggccaagcagacttgataggatcatcgctgacagctggccagagtggtaggatctccaggtgttaaggcaccaagggcagggat i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1033288 341 + 1565135 aaagaccacctacagaatgggagaaattatttgcaaa--tcctgtatctgacaagagacttacatccagaatctataaagagctctgacagctgctaaagaaaataacaaTGCATGGCAGTAGCAtgcagaaggcgaagagactggactcaactccgacttcacggaggacaggcgggaattgacaaccagggac-----cagggtcagggtcagggtcagtggatggagaattacccagaggaagcatcaagaaggggtttctggccaagcagacttgataggatcgttgctgacagctggccagagtggtaggatctccaggtgttaaggcaccaagggcagggat i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3397938 341 - 13651311 aaagaccacctacagaatgggagaaattatttgcaaa--tcctgtatctgacaagagacttacatccagaatctacaaagagctcttacagctgctaaagaagaaaacaGTGCATGGCACTAGCAtgcagaaggggaagagactggactcaactccgacttcacggaggacaggtgggaattgacgaccagggac-----cagggtcagggtcagggtcagtggatggaaaattactctgaggaagcatcaagaaggggtttctggccaagcagacttgataggatcgttgctgacagctggccagagtggtaggctctccaggtgttaaggcaccaagggcagggat i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3487071 329 - 108792865 aaagacaacctacagaatgggaaggattatttgcaaa--tcctatatccgataagagacttacatctagaatatataaagagctctta------ctaaaggaaaa-aTGATTCATGGCACTTCCATGC---Agg-agagagcctggatgcaacttcgacttcaaagaggacaggtgggaatttacaaccaaggatcgc------gtaggggtcagcgtcagcggatggaaaattacccagaggaagcatcaagaaggggtttctggccaagcagacttgatagggttattgctgacagccggccagggtggtaggagcctcaggtgcccaaacactgagggtggggat i calJac3.chr14 I 69 C 0 s saiBol1.JH378218 3131003 339 - 7082604 aaggacaagctacagaatgggagagattgtttgcaaatctcctatatccgacaagagacttacacctagaatacgtaaagagctctta------cTAAAGGAAAA-ATGATTCATGGCTCTTCCACGCAGAAgg-ggagagcctggacgcaactccaacttcaaggaggacaggtgggaatttacagccaaagaccgcatcagggtcagggtcagcgtcagtggatgg-aaattacccagaggaagcatcaggaaggggtttctggccaggcagacttgatagggtcactgctgacagccgtccagggtgctaggagccccaggtgcccagacactgagggcagggat i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 617044 337 + 5243153 gaagacaacctacagaacaggagggattgtttgcaaa--acctgtatccaaaaagagacttacatctagaatatataaggaacgctta------cTAAAAGAAAC-ATGATTCATGGCACTTCCAtgcagaagg-ggacagcctggatgcaactccaacttcaaggaggacaggtgggaatttacaaccaaggacggcgtcagggtcagggtcagcgtcagcggatgg-aaattacccagaggaagcgtcaggaagaggtttctggccaagcagactggatagggtcactgctgacagccggccagggtggtcggagccccaggtgcccagacatggagggcagggat i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3360064 337 + 7587287 aaagacagcctacagaatggga-ggattatttgcaaa--tcctgtatccgataagagacttacatctagaatatatgaagagctctta------ctaacggaaaa-atgaTTCCTGGCACTTCCAtgcagaagg-ggagagcctggacgcaactccgacttcaaggaggacaggtgggaatttacaaccaaggagcgcgtcagggtcagggtcagcgtcagcggatggaaaattacccagaggaggtgtcaggagggggtttctggccaagcagacttgatagggtcattgctgacagccggccagggtggtaggagccccaggtgcccagacactgagggcggggat i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2565811 277 + 5252280 AAAGGCGGCC-GCAGAGTGGAGAGTGTCGCGTG------TCCCGTGTCTGAGCGGAGACCCTCACCGAAA----GCAGAGGACACCCA------CTGAGAAGAAC----GTGCCTGGGACT--CTTGTTGACAT-AGGGAGACCTTATTCACGGACG-CTGCCCTGGGTATTGCTAGG----GAGACTCCAGGAC-----ACGGCCCAGGAGCAGGACCGGTCAGTG---------CTAGGGAA--------------------GGCCCAGCCAACATGATGGGATC-CTGCTGGAGGCTGGCCAGGG-GACAGGACATC----TGGTCAGAT-CCAGGGGTAGGGC- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2061947 244 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 602751 3158 + 2232271 I e cerAty1.NW_012000820v1 3399866 1021 - 10304083 I e nomLeu3.chr19 3079242 1269 + 81552678 M a score=912946.000000 s hg38.chr2_KI270769v1_alt 82476 105 + 120616 ttttcttaaactgacttagc-aggattcttgctcacactggattctacaaggacagagaaggaaggcaaggtc----------aagcttgtctg---gtagaggag-------------GCTTC-------------------------------------------------------------------TGCACGGA s panTro5.chr2A 3544261 105 + 111504155 ttttcttaaactgacttagc-aggattcttgctcacactggattctacaaggacagagaaggaaggcaaggtc----------aagcttgtctg---gtagaggag-------------GCTTC-------------------------------------------------------------------TGCACGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3405006 105 + 114371477 ttttcttaaactgacttagc-aggattcttgctcacactggattctacaaggacagagaaggaaggcaaggtc----------aagcttgtctg---gtagaggag-------------GCTTC-------------------------------------------------------------------TGCACGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 282852 105 + 637652 ttttcttaaactgacttagc-aggattcttgctcacactggattctacaaggacagagaaggaaggcaaggtc----------aagcttgtctg---gtagaggag-------------GCTTC-------------------------------------------------------------------TGCACGGA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3342132 103 + 108979918 ttttctt-aactgacttagc-aggattctt-ctcacactggattctacaaggacagagaaggaagccaaggtc----------gagcttgtcta---gtagaggag-------------GCTTC-------------------------------------------------------------------TGCGCGGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5052954 103 - 111193037 ttttctc-aactgacttagc-aggattctt-ctcacactggattctacaaggacagagaaggaagccaaggtc----------gagcttgtcta---gtagaggag-------------GCTTC-------------------------------------------------------------------TGCGCGGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3445572 103 + 3644372 ttttctt-aactgacttagc-aggattctt-ctcacactggattctacaaggacagagaaggaagccaaggtc----------gagcttgtcta---gtagaggag-------------GCTTC-------------------------------------------------------------------TGCGCGGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3400887 104 - 10304083 ttttcttaaactgacttagc-aggattctt-ctcacactggattctacaaggacagagaaggaagccaaggtc----------gagcttgtcta---gtagaggag-------------GCTTC-------------------------------------------------------------------TGCGCGGA i cerAty1.NW_012000820v1 I 1021 C 0 s chlSab2.chr14 3503455 104 - 107702431 ttttcttaaactgacttagc-aggattctt-ctcacactggattctacaaggacagagaaggaagccaaggtc----------gagcttgtcta---gtagaggag-------------GCTTC-------------------------------------------------------------------TGCGCGGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1033629 104 + 1565135 ttttcttaaactgacttagc-aggattctt-ctcacactggattctacaaggacagagaaggaagccaaggtc----------gagcttgtcta---gtagaggag-------------GCTTC-------------------------------------------------------------------TGCGCGGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3398279 104 - 13651311 ttttcttaaactgacttagc-aggattctt-ctcacactggattctacaaggacagagaaggaagccaaggtc----------gagcttgtcta---gtagaggag-------------aCTTC-------------------------------------------------------------------TGCACGGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3487400 104 - 108792865 ttttcctaaactgatttggc-aggatttgtgctcacactggattctacaaggacagagaaggaagccaaggtc----------gagcttgtcta---gtagaggag-------------GCTTC-------------------------------------------------------------------TGCCTGA- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3131342 104 - 7082604 ttttcctaaactgatttagc-aggattcttgctcacgctggattctgcaaggacagagaaggaagccaaggtc----------gagcttgtcta---gcagaggag-------------GCTTC-------------------------------------------------------------------TGCACGG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 617381 105 + 5243153 ttttcctaaactgatttagc-aggattcttgctcacactggattctacaaggacagagaaggaagccaaggtc----------gagcttgtcta---gtagaggag-------------GCTTC-------------------------------------------------------------------TGCACGGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3360401 104 + 7587287 tttt-ctaaactgatttagc-cggattcttgctcacactggattctacaaggacagagaaggaagccaaggtc----------gagcttgtcta---gtagaggag-------------GCTTC-------------------------------------------------------------------TGCACGGA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2566088 197 + 5252280 TATCACTAAACTGAC--GGCTGGGATCCTCGCTCAGACCCGATTCCACAGGGACAGACCAGGAAACCCAGGTTGTCCTGTCAGGAGCCTGACTGTGCTCAGAGGAGAGTCATCATCACAGCTTCACTGTGAAATGTCAGATGACGCCTGAAGGAACAGTCACGTCTGAGGGCAGGCAGGGCGGCTCCGCAGGGCGCGGC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2061947 244 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 602751 3158 + 2232271 I e nomLeu3.chr19 3079242 1269 + 81552678 M a score=1909418.000000 s hg38.chr2_KI270769v1_alt 82581 232 + 120616 TGC------------AGCCTAATTTAT-GCATTGACAGCCTGCC-TGGTTCCCAGCAGGCCCTCGGGTTCTGCAGAGAG-AGCAGGTGAGGGGGG-GTCAGGGG-AAAGGAGAGCACC-----------CCTGGGGCCGGC-T-CTGCTGTGCTCACGC---CGGGACGGGAAGAGGAGCTGGTGAAGGAG-AACTC----A----AGAAAAACATGGAAGAGAAGCTAGGGTACTCTGAAATAGATCGCATCTTTCTT-----TTATTC-GTTTATGTA s panTro5.chr2A 3544366 232 + 111504155 TGC------------AGCCTAATTTAT-GCATTGACAGCCTGCC-TGGTTCCCAGCAGGCCCTCGGGTTCTGCAGAGAG-AGCAGGTGAGGGGGG-GTCAGGGG-AAAGGAGAGGACC-----------CCTGGGGCCTGC-T-CTGCTGTGCTCACGA---CGGGGCGGGAAGAGGAGCTGGTGAAGGAG-AACTC----A----AGAAAAACATGGAAGAGAAGCTAGGGTACTCTGAAATAGATCGCATCTTTCTT-----TTATTT-GTTTATGTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3405111 232 + 114371477 TGC------------AGCCTAATTTAT-GCATTGACAGCCTGCC-TGGTTCCCAGCAGGCCCTCGGGTTCTGCAGAGAG-AGCAGGTGAGGGGGG-GTCAGGGG-AAAGGAGAGGACC-----------CCTGGGGCCTGC-T-CTGCTGTGCTCACGA---CGGGGCGGGAAGAGGAGCTGGTGAAGGAG-AACTC----A----AGAAAAACATGGAAGAGAAGCTAGGGTACTCTGAAATAGATCGCATCTTTCTT-----TTATTT-GTTTATGTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 282957 232 + 637652 TGC------------AGCCTAATTTAT-GCATTGACAGCCTGCC-TGGTTCCCAGCAGGCCCTCGGGTTCTGCAGAGAG-AGCAGGTGAGGGGGG-GTCAGGGG-AAAGGAGAGGACC-----------CCTGGGGCCGGC-T-CTGCTGTGCTCACGC---CGGGGCGGGAAGAGGAGCTGGTGAAGGAG-AACTC----A----AGAAAAACATGGAAGAGAAGCTAGGGTACTCTGAAATAGATCGCATCTTTCTT-----TTATTC-GTTTATGTA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3342235 231 + 108979918 TGC------------AGCCTAATTTAT-GCATTGACAGCCTGCC-TGGTTCCCAGCAGGCCCTCGGCTTCTGCGGAGAG-AGCAGGTGAGGGGGG-GTCAGAGG-AAAGCAGAGGACC-----------CCTGGGGCCGGC-T-CTGCTGTGCTCACGACGGCGGGTGGGGAAGAGGAGCTGGTGAAGGAG-AACTC----A----AGAAAAACATGGAAGAGAAGCTAGGGTATTCTGAAATAGATCACA----TCTT-----TTATTG-GTGTATGTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5053057 231 - 111193037 TGC------------AGCCTAATTTAT-GCATTGACAGCCTGCC-TGGTTCCCAGCAGGCCCTCGGCTTCTGCggagag-agcaggtgagggggg-gtcagagg-aaaggagaggaCC-----------CCTGGGGCCGGC-T-CTGCTGTGCTCACGACGGCGGGTGGGGAAGAGGAGCTGGTGAAGGAG-AACTC----A----AGAAAAACATGGAAGAGAAGCTAGGGTATTCTGAAATAGATCACA----TCTT-----TTATTG-GTGTATGTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3445675 231 + 3644372 TGC------------AGCCTAATTTAT-GCATTGACAGCCTGCC-TGGTTCCCAGCAGGCCCTCGGCTTCTGCGGAGAG-AGCAGGTGAGGGGGG-GTCAGAGG-AAAGGAGAGGACC-----------CCTGGGGCCGGC-T-CTGCTGTGCTCACGACGGCGGGTGGGGAAGAGGAGCTGGTGAAGGAG-AACTC----A----AGAAAAACATGGAAGAGAAGCTAGGGTATTCTGAAATAGATCACA----TCTT-----TTATTG-GTGTATGTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3400991 231 - 10304083 TGC------------AGCCTAATTTAT-GCATTGACAGCCTGCC-TGGTTCCCAGCAGGCCCTCGGCTTCTGCggagag-agcaggtgagggggg-gtcagagg-aaaggagaggaCC-----------CCTGGGGCCGGC-T-CTGCTGTGCTCACGACGGCGGGTGGGGAAGAGGAGCTGGTGAAGGAG-AACTC----A----AGAAAAACATGGAAGAGAAGCTAGGGTATTCTGAAATAGATCACA----TCTT-----TTATTG-GTGTATGTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3503559 231 - 107702431 TGC------------AGCCTAATTTAT-GCATTGACAGCCTGCC-TGGTTCCCAGCAGGCCCTGAGCTTCTGCAGAGAG-AGCAGGTGAGGGGGG-GTCAGAGG-AAAGGAGAGGACC-----------CCTGGGGCCGGC-T-CTGCTGTGCTCACGACGGCGGGTGGGGAAGAGGAGCTGGTGAAGGAG-AACTG----A----AGAAAAACATGGAAGAGAAGCTAGGGTATTCTGAAACAGATCACA----TCTT-----TTATTG-GTGTATGTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1033733 231 + 1565135 TGC------------AGCCTAATTTAT-GCATTGACAGCCTGCC-TGGTTCCCAGCAGGCCCTCGGCTTCTGCGGAGAG-AGCAGGTGAGGGGGG-GTCAGAGG-AAAGGAGAGGACC-----------CCTGGGGCCGGC-T-CTGCTGTGCTCACAGCGGTGGGTGGGGAAGAGGAGCTGGTGAAGGAG-AACTC----A----AGAAAAACATGGAAGAGAAGCTCGGGTATTCTGAAATAGATCACA----TCTT-----TTATTG-GTGTATGTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3398383 231 - 13651311 TGC------------AGCCTAATTTAT-GCATTGACAGCCTGCC-TGGTTCCCAGCAGGCCCTCGGCTTCTGCAGAGAG-AGCAGGTGAGGGGGG-GTCAGAGG-AAAGGAGAGGACC-----------CCTGGGGCCGGC-T-CTGCTGTGCTCACGATGGCGGGTGGGGAAGAGGAGCTGGTGAAGGAG-AACTC----A----GGAAAAACATGGAAGAGAAGCTAGGGTATTCTGAAACAGATCACA----TCTT-----TTATTG-GTGTATGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3487504 229 - 108792865 TGC------------AGCCTAATTTAT-GCA-TGACATTCCGCC-TGGTTCCCAGCAGGCCCTCAGGTTCTGCGGAGAG-AGCAGGTGAGGGAGG-GTCTGAGGAAAAGGAGAGGACC-----------CCCGGGGGCAGC---CTGTGGTGCTCACAG---TGGGGCGGGAAGAGGAGCTGGGGAAGGAGAAACTC-----------ACAGACACGGAAGAGAAGCCA-GGTGTTCTGAAATCGACTGCATCTTGTGT-----TTGTTTCATTTATGTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3131446 224 - 7082604 TGC------------AGCCGAATTTAT-GCATTGACAGCCGGCC-TGGTTCCCAGCAGGCCTTCGGGTTCTGC-GAGAG-AGCAGGTGAGGGAGG-GTCTGAGG-AAAGGAGAGGACC-----------CCTGGGGCCCCC-T-CTGCCAGGCTCACAG---TGGGGTGGGAGGAGGAGCTGGGGAAGGAG-AGCTC-----------AAAAACACAGAAGAGACGCTA-GATGTTCTGAAAT---CTGCATCTTGCTT-----TTCTTT-GTTTGGGTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 617486 228 + 5243153 TGC------------AGCCAAATTTAT-GCACTGACAGCCAGCC-TGGTTCCCAGCAGGCCCTCGGGTTCTGCAGAGAG-AGCAGGTGAGGGAGG-GTCTGAGG-AAAGGTGAGGACC-----------CCTGGGGCCGGC-T-CTTTGGGGCTCACAG---TGGGGTGGGAGGAGGAGCTGGGGAAGGAG-AGCTC-----------AAAAACATGGAAGAGAAGCTA-GGTGTTCCGAAATCGACTGCATCTTGATT-----TTGTTC-GTTTCTGTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3360505 228 + 7587287 TGC------------AGCCTAATTTAT-GCATTGATGGGCTGCC-TGGTTCCCAGCAGGCCCTTGGGTTCTGCTGAGAG-AGCAGGTGAGGGAGG-GTCTGAGG-AAAGGAGAGGACC-----------CCTGGGGCCAGC-T-CTGTGGTGCTCACGG---AGGGGCGGGAAGAGGAGCTGGGGAAGGAG-AACTC-----------AAAAACGCGGAAGAGAGGCTA-GGTGTTCTGAAATCGGCTGCATCTTGCTT-----TTGTTC-ATTTATGTA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2566285 243 + 5252280 CGCTCCGCAGGGCAAGGTCTTACTGATAGCGTTTGCAG-CTACC-TGGTTCCCAGCTGGACCTAGTGCTCTGC----CG-AGCAGGTGAAGGAAGTGTCAGAAG-AGAAACAGTGCCA-----------CCTCAGACCTGCCT-CCAACCAGGTGTCTG---TGTGGTGGGAAGTGGGCTTGGAGTAGG-G-AACTCCCAGA----AGAGAAAGGTGAAAGAGA--CTAGGATTTTGTGAAATAGATCACATCCTTCTT-----CTATTA-TTTTATGTG i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 605909 241 + 2232271 TAT------------AGTCTAATTTTT-TTATTTATGCCCTCCCTTAGTTTCCAGGTGTCT-----GTTGTACAGAGAGAAGCAAATGAACGAGG-G---AACG-AAAAGAAAGAGCCATGATTAGAGACGTAGAACCATC-TAGTTTTATATTTACAA---------AGTTAGAGGAGTTGGTGAAGGAG-ACCTC----AAAGGAGAAAATGGTAAAAGAGAAACTAGGATATTGTGTACTAGATTACATTTTTCTTTTTTATTATTA-TTTTAAGTC i dasNov3.JH580157 I 3158 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2061947 244 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e nomLeu3.chr19 3079242 1269 + 81552678 M a score=885860.000000 s hg38.chr2_KI270769v1_alt 82813 104 + 120616 CATTAGCCTGGGGG----GATTTGCCCAGTTGGAATGGAACAGTTTTTCTGATAAGCTTTAAAATACAAGAATGTTTTAT-------AAC----ATAAAAATTTAG-AC-TAAA---GTTTTCC s panTro5.chr2A 3544598 104 + 111504155 CATTAGCCTGGGGG----GATTTGCCCAGTTGGAATGGAACAGTTTTTCTGATAAGTTTTAAAATACAAGAATGTTTTAC-------AAC----ATAAAAATTTAG-AC-TAAA---GTTTTCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3405343 104 + 114371477 CATTAGCCTGGGGG----GATTTGCCCAGTTGGAATGGAACAGTTTTTCTGATAAGTTTTAAAATACAAGAATGTTTTAC-------AAC----ATAAAAATTTAG-AC-TAAA---GTTTTCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 283189 104 + 637652 CATTAGCCTGGGGG----GATTTGCCCAGTTGGAATGGAACAGTTTTTCTGGTAAGCTTTAAAATACAAGAATGTTTTAT-------AAC----ATAAAAATTTAG-AC-TAAA---GTTTTCC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3342466 107 + 108979918 CATTAGCCTGAGGG----GATTTGCCCAGTTGGAATGCAACAGTTGTTCTGATAGGCTTTAAAATATAAGAATGTTTTAT-------AAC----ATAAAAATTTAG-AC-TAAACAAGTTTTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5053288 107 - 111193037 CATTAGCCTGAGGG----GATTTGCCCAGTTGGAATGCAACAGTTTTTCTGATAGGCTTTAAAATATAAGAATGTTTTAT-------AAC----ATAAAAATTTAG-AC-TAAACAAGTTTTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3445906 107 + 3644372 CATTAGCCTGAGGG----GATTTGCCCAGTTGGAATGCAACAGTTTTTCTGATAGGCTTTAAAATATAAGAATGTTTTAT-------AAC----ATAAAAATTTAG-AC-TAAACAAGTTTTCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3401222 107 - 10304083 CATTAGCCTGAGGG----GATTTGCCCAGTTGGAATGCAACAGTTTTTCTGATAGGCTTTAAAATATAAGAATGTTTTAT-------AAC----ATAAAAATTTAG-AC-TAAACAAGTTTTCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3503790 107 - 107702431 CATTAGCCTGAGGG----GATTTGCCCAGTTGGAATGCAACAGTTTTTCTGATAGGCTTTAAAATATAAGAATGTTTTAT-------AAC----ATAAAAATTTAG-AC-TAAACAAGTTTTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1033964 106 + 1565135 CATTAGCCTGAGGG----GATTTGCCCAGTTGGAATGCAACAGTTTTTCTGATAAGCTTTAAAATATAAGAATGGTTTAT-------AAC----ATAAAAATTTAG-AC-TAAACAAG-TTTCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3398614 107 - 13651311 CATTAGCCTGAGGG----GATTTGCGCAGTTGGAATGCAACAGTTTTTCTGATAAGCTTTAAAATATAAGAATGTTTTAT-------AAC----ACAAAAATTTAG-AC-TAAACACGTTTTCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3487733 98 - 108792865 CATTAGCCTGAGGGGATCTATCTGCCCAGTTCAAATGTAACAGTTTTTGTGATAAGC--------------ATGTTTTAT-------AAC----ATGAAAATTTAG-ACTTAAACAAGttttct i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3131670 94 - 7082604 CACTAGCCTGAGGG----CATCTGCCCAGTTGAAATGTAACAGTTTTTCTGATAAGC--------------ATGTTTTAT-------AAC----ATAAAAATTCAG-ACTTAAACAAGTTTTCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 617714 94 + 5243153 CATTAGCCTCAGGG----GATCTGCCCAGTTGAAATGTAACAGTTTTTCTGATAAAC--------------ATGTTTTAT-------AAC----ATAAAAATTTAG-GCTTAAACAAGTTTTCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3360733 86 + 7587287 CATTAGCCTGAGGG----GATGTGCCCAGTTGAAATGTA--AGTTTTCCTGATAAGC--------------ATGTTTTAT-------AAC----ATACAAATTTAG-ACTTA------TTTTCT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2566528 91 + 5252280 CGTTGATCTGGAGG----AATTT-TTCATTTAGAATTTACCA--------------------AATATGAGAATGTTTTAT--GCACAAAC----ACAAAAATTTGG-AC-TTCATGAGTTTTCT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2062191 108 + 64289059 CACTAATCTGAGGG-----CTTGGCCCATCAGGAGCATACCGGTT----TGATAAGCTTTAAAGTACGAAAATGTTTTATAGATACAAAC----ATAAAAACTTGA-GC-TGAATGGTTTTTC- i canFam3.chr17 I 244 I 503 s dasNov3.JH580157 606150 116 + 2232271 CATTAATCAGGGAG----GGTTTGCCCATTTGGACTGTATCAGTTTTTCTGATCCattttttaatatgaaaatattttat--ataCAAACACCTATAAAAATTTTGCAC-TAAATCATTTTCC- i dasNov3.JH580157 C 0 I 1276 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e nomLeu3.chr19 3079242 1269 + 81552678 M a score=-14580.000000 s hg38.chr2_KI270769v1_alt 82917 3 + 120616 GT-----G s panTro5.chr2A 3544702 3 + 111504155 GT-----G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3405447 3 + 114371477 GT-----G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 283293 3 + 637652 GT-----G i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3342573 3 + 108979918 GT-----G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5053395 3 - 111193037 GT-----G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3446013 3 + 3644372 GT-----G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3401329 3 - 10304083 GT-----G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3503897 3 - 107702431 GT-----G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1034070 3 + 1565135 GT-----G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3398721 3 - 13651311 GT-----G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3487831 5 - 108792865 ttttg--- i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3131764 2 - 7082604 GT------ i saiBol1.JH378218 C 0 I 1 s cebCap1.NW_016107454v1 617808 3 + 5243153 GT---G-- i cebCap1.NW_016107454v1 C 0 I 35 s aotNan1.NW_018509326v1 3360819 3 + 7587287 GT----G- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2566619 3 + 5252280 GT-----G i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e nomLeu3.chr19 3079242 1269 + 81552678 M a score=22800.000000 s hg38.chr2_KI270769v1_alt 82920 7 + 120616 TTGGTTT- s panTro5.chr2A 3544705 7 + 111504155 TTGGTTT- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3405450 7 + 114371477 TTGGTTT- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 283296 7 + 637652 TTGGTTT- i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3342576 6 + 108979918 TTGG-TT- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5053398 6 - 111193037 TTGG-TT- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3446016 6 + 3644372 TTGG-TT- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3401332 6 - 10304083 TTGG-TT- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3503900 6 - 107702431 TTGG-TT- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1034073 6 + 1565135 TTGG-TT- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3398724 6 - 13651311 TTGG-TT- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3487837 6 - 108792865 cggg-tt- i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3131767 6 - 7082604 TGGG-CT- i saiBol1.JH378218 I 1 C 0 s aotNan1.NW_018509326v1 3360822 6 + 7587287 TTGG-TT- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2566622 7 + 5252280 TTGA-CTT i otoGar3.GL873658 C 0 I 316 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e cebCap1.NW_016107454v1 617811 35 + 5243153 I e nomLeu3.chr19 3079242 1269 + 81552678 M a score=134995.000000 s hg38.chr2_KI270769v1_alt 82927 33 + 120616 TTGGGTAGGGTTTTTCTGGTGGG------------tttttttgtc s panTro5.chr2A 3544712 33 + 111504155 TTGGGTAGGGTTTTTCTGGTGGG------------tttttttgtc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3405457 32 + 114371477 TTGGGTAGGGTTTTTCTGGTGGG-------------ttttttgtc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 283303 33 + 637652 TTGGGTAGGGTTTTTCTGGTGGG------------tttttttgtc i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3342582 37 + 108979918 TTGGGTAGGGtttttttggtggt--------tttgtttgtttgtt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5053404 37 - 111193037 TTGGGTAGGGtttttttggtggt--------tttgtttgtttgtt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3446022 37 + 3644372 TTGGGTAGGGtttttttggtggt--------tttgtttgtttgtt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3401338 45 - 10304083 TTGGGTAGGATTTTTTTGGTGGTtttgtttgtttgtttgtttgtt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3503906 37 - 107702431 TTGGGTAGGATTTTTCTGGTGGt--------tttgtttgtttgtt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1034079 37 + 1565135 TTGGGTAGGGtttttttggtggt--------tttgtttgtttgtt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3398730 34 - 13651311 TTGGGTAGGGtttttttggtggt--------t---tttgtttgtt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3487843 15 - 108792865 tgg-----------tttggt----------------ttggtt--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3131773 29 - 7082604 TGGGGTGGCGCTTTTTTGGTGGC-------------ttgttt--- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3360828 39 + 7587287 TGGGGTGGCGCTTTTTTGGTGGC---tttgttttttttgttt--- i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e otoGar3.GL873658 2566629 316 + 5252280 I e cebCap1.NW_016107454v1 617811 35 + 5243153 I e nomLeu3.chr19 3079242 1269 + 81552678 M a score=1389564.000000 s hg38.chr2_KI270769v1_alt 82960 171 + 120616 tgtttttgagacgaggcctcgctctgtcacccacactggagtgcagaggcgcaaatgcagctcactgcagccttgacctcctgggctcaagcaatcctcccgcctcagcctcccgagtagctggga--acaggaatgcaccaccatgcccagctaagttttttgtagagag-gg s panTro5.chr2A 3544745 173 + 111504155 tgtttttgagacgaggcctcgctctgtcacccacactggagtgcagaggcgcacatgcagctcactgcagccttgacctcctgggctcaagcagtcctcccgcctcagcctcccaagtagctgggactacaggaatgcaccaccatggccagctaagttttttgtagagag-gg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3405489 173 + 114371477 tgtttttgagacgaggcctcgctctgtcacccacactggagtgcagaagcgcacatgcagctcactgcagccttgacctcctgggctcaagcagtcctcccgcctcagcctcccaagtagctgggactacaggaatgcaccaccatggccagctaagttttttgtagagag-gg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 283336 172 + 637652 tgtttttgagacgaggcctcgctctgtcacccacactggagtgcagaggcgcaaatgcagctcactgcagccttgacctcctgggctcaagcagtcctcccgcctcagcctcccgagtagctgggactacgggaatgcaccaccatgcccagctaagttttttgtagaga--gg i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3342619 173 + 108979918 tgtttttgagacagggtctggctgtgtcacccacactagagcgcaggggagcaaatgcagctcactgcagccttgacctcctgggctccagcaatcctcccacctcagtctcccgagtagctgggactacaggaatgcaccaccacacccggctaagttgtttgtagagat-gg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5053441 173 - 111193037 tgtttttgagacagggtctggctgtgtcacccacactagagtgcaggggagcaaatgcagctcactgcagccttgacctcctgggctcaagcaatcctcccacctcagtctcccgagtagctgggactacaggaatgcaccaccacacccggctaagttgtttgtagagat-gg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3446059 173 + 3644372 tgtttttgagacagggtctggctgtgtcacccacactagagtgcaggggagcaaatgcagctcactgcagccttgacctcctgggctcaagcaatcctcccacctcagtctcccgagtagctgggactacaggaatgcaccaccacacccggctaagttgtttgtagagat-gg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3401383 173 - 10304083 tgtttttgagacagggtctcgctgtgtcacccacactagagtgcaggggcgcaaatgcagctcactgcagccttgacctcctgggctcaagcaatcctcccacctcagcctcccgagtagctgggactacaggaatgcaccaccacacccagctaagttttttgtagagat-gg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3503943 173 - 107702431 tgtttttgagacagggtctcgctgtgtcacccacactagagtgcagaggcgcaaatgcagctcactgcagccttgacctcctgggctcaagcagtcctcccacctcagcctcccgagtagctgggactacaggaatgcaccaccacacccagctaagttgtttgtagagat-gg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1034116 173 + 1565135 tgtttttgagacagggtctggctgtgtcacccacactagagtgcaggggagcaaatgcagctcactgctgccttgacctcctgggctcaagcaatcctcccacctcagcctcccgagtagctgggactacaggaatgcaccaccacacccagctaacttttttgtagagat-gg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3398764 173 - 13651311 tgtttttgagacagggtctcgctgtgtcacccacactagagtgcagaggcgcacatgcagctcactgcagccctgacctcctgggctcaagcaatcctcccacctcagcctcccgagtagctgggactacaggaatgcaccaccacacccagctaagttttttgtagagat-gg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3487858 165 - 108792865 tggttttgagacag------gctctgtcgcccaggctggagtgcaggggcacaaatgcagcgtactgcagccttgacctcccgggcttaagcagccctcccgcctcagcttcccaagtagctgggactataggaatg---caccacgcccagctaagttttttgtagagatggg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3131802 167 - 7082604 tgtttttgagacag------gctctgtcacacaggctggagtgcaggggcacaaatgcagcttactgcagccgtgacctcctgggctcaagcagtcctcccgcctcagcctcccaagtagctggcactataggaatgtgccaccatgcccagctaaggtttttgtagatat-gt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 617846 157 + 5243153 tgttttagagacag------gctctgtcacacaggctggagtgcaggggcacaaa----------tgcagccgtgacctcctgggctcaagcagtcctcccgcctcggcgtcccaagtagctgggactataggaatgcgccaccacgcccagctaagttttttatagagat-ga i cebCap1.NW_016107454v1 I 35 C 0 s aotNan1.NW_018509326v1 3360867 168 + 7587287 tgtttttgagacag------gctctgtcgcccaggctggagtgcaggggcacaaatgcagctccctgcagccttgacctcctgggctcaagcagtcctcgcgcctcagcctcccaagcagctgggactataggaatgtgccaccacgcccagctaagttttttgtagagatggg i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e otoGar3.GL873658 2566629 316 + 5252280 I e nomLeu3.chr19 3079242 1269 + 81552678 M a score=1934030.000000 s hg38.chr2_KI270769v1_alt 83131 197 + 120616 ggtcttgccatgttgcccaggctggtctcaaactcctggcctcaagcaatcctcctgcctct------gcctcccaaagtgctgggattacaggcatgagccactgggcccagcTGAAATGAGTTTTCTGTATCAATTGCAGACCTATGCTTCTGTGACTAAAGTTGATcagtggtaaatatgaaaagaactgggttttctag s panTro5.chr2A 3544918 197 + 111504155 ggtcttgccatgttgcccaggctggtctcaaactcctggcctcaagcaatcctcctgcctct------gcctcccaaagtgctgggattacaggcatgagccactgggcccagcTGAAATGAGTTTTCTGTATCAATTGCAGACCTGTGTTTCTGTGACTAAAgttgatcagtggtaaatatgaaaagaactgggttttctag i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3405662 197 + 114371477 ggtcttgccatgttgcccaggctggtctcaaactcctggcctcaagcaatcctcttgcctct------gcctcccaaagtgctgggattacaggcatgagccactgggcccagcTGAAATGAGTTTTCTGTATCAATTGCAGACCTGTGTTTCTGTGACTAAAgttgatcagtggtaaatatgaaaagaactgggttttctag i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 283508 197 + 637652 ggtcttgccatgttgcccaggctggtctcaaactcctggcctcaagcaatcctcctgcctct------gcctcccaaagtgctgggattacaggcatgagccactgggcccagcTGAAATGAGTTTTCTGTATCAATTGCAGACCTATGCTTCTGTGACTAAAgttgatcagtggtaaatatgaaaagaactgggttttctag i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3080511 203 + 81552678 gatcttgccatgttacccaggctggtctcaaactcctggcttcaagcagtcctcctgcctctgcctccgcctcccaaagttatgcgattacaggcatgagccactgggcccagcTGAAATGAGTTTTCTGTATCAATTCCAGACCTATGTTTCTGTGACTAAAgttgatcagtggtaaatatgaaaagaactgggttttctag i nomLeu3.chr19 M 1269 C 0 s rheMac8.chr13 3342792 197 + 108979918 ggtcttgccatgttgcccaggctggtctcaaactcctggcctcaagcagtcctcctgcctct------gcctcccaaattgctgggattataggcatgagccactgggcccagcTGAAATGAGTTTTCTGTATCAATTACAGACCTATGTTTTCGTGACTGAAgttgatcagtggtaaatatgaaaagaactggggtttctgg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5053614 197 - 111193037 ggtcttgccatgttgcccaggctggtctcaaactcctggcctcaagcagtcctcctgcctct------gcctcccaaattgctgggattataggcatgagccactgggtccagcTGAAATGAGTTTTCTGTATCAATTACAGACCTATGTTTCCGTGACTGAAgttgatcagtggtaaatatgaaaagaactggggtttctgg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3446232 197 + 3644372 ggtcttgccatgttgcccaggctggtctcaaactcctggcctcaagcagtcctcctgcctct------gcctcccaaattgctgggattataggcatgagccactgggcccagcTGAAATGAGTTTTCTGTATCAATTACAGACCTATGTTTCCGTGACTGAAGTCGATcagtggtaaatatgaaaagaactggggtttctgg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3401556 197 - 10304083 ggtcttgccatgttgcccaggctggtctcaaactcctggcctcaagcagtcctcctgcctct------gcctcccaaattgctgggattataggcatgagccactgggcccagcTGAAATGAGTTTTCTGTATCAATTTCAGACCTATGTTTCTGTGACTGAAGTTGATCAATGGTAAATATGaaaagaactggggtttctgg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3504116 197 - 107702431 ggtcttgccatgttgcccaggctggtctcaaactcctggcctcaagcagtcctcctgcctct------gcctcccaaattgctgggattataggcatgagccactgggcccagcTGAAATGAGTTTTCTGTATCAATTTCAGACCTGTGTTTCCGTGACTGAAgttgatcagtggtaaatatgaaaagaactggcgtttctgg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1034289 197 + 1565135 ggtcttgccatgttgcccaggctggtctcaaactcctggcctcaagcagtcctcctgcctct------gcctcccaaattgctgggattataggcatgagccactgggcccagcTGAAATGAGTTTTCTGTATCAATTTCACACCTATGTTTCCATGACTGAAgttgatcagtggtaaatatgaaaagaactggggtttctgg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3398937 192 - 13651311 ggtcttgccatgttgccca-----gtctcaaactcctggcctcaagcagtcctcctgcctct------gcctcccaaatggctgggattataggcatgagccactgggcccagcTGAAATGAGTTTTCTGTATCAATTTCAGACCTATGTTTCCGTGACTGAAgttgatcagtggtaaatatgaaaagaactggggtttctag i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3488023 196 - 108792865 ggtctctccgtgttgcccaggttgatctcaaactcctgacctcaagtaatcctgctgcctct------gcctcccaaggtgctgggattacaggcatgagccactgggcccagcTGAAATGAG-TTTCTGTATCACTTTCAGACCCAGGTTTCTGTGACtccggtttatcagtagtaaatacgaaaagaactaggatttctag i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3131969 195 - 7082604 ggtctcaccgtgcagcacaggctgatctcaaactcctggcctcaagtaaacctgctgcctct------gcctcccagagtgctgggattacaggcatgaaccactgtgcccagcTGAAATGAGTTTTCTGTATCACTTTCAGACCTAGGTTTCTGTGActc--gtttatcagtagtaaatatgaaaagaactaggatttctag i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 618003 197 + 5243153 ggtctcgctgtgttgcctaggctgatctcaaactcctggcctcaagtaatcctgctggctct------gcctcccaaagtgctgggattacaggcatgagccactgggcccagcTGAAATGAGTTTTCTGTATCACTTTCAGACCTAGGTTTCTGTGACtcaagtttatcagcagtaaatatgaaaagaactagaatttctag i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3361035 196 + 7587287 ggtctcaccgtgttgc-caggttgatctcaaactcctggcctcaagtaatcctgctgcctct------gcctcccaaagtgctgggattacaggcatgagccactgggcccagcTGAAATGAGTTTTCTGTATCACTTTCAGACCTAGGTATCTGTGACtcaagtttatcagtaggaaatatgaaaagaactaggatttctag i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e otoGar3.GL873658 2566629 316 + 5252280 I a score=2726549.000000 s hg38.chr2_KI270769v1_alt 83328 283 + 120616 ctgactacagatttaatatcatctagcaacct-atgtggctgttaacatagctgttctgtctt--tggatggt-ttaaaatcatctgactcccacaccacagagaagaatcattcttgccttcctctccagtcaacagctcacagccatggactgcaggacactccgccttgagaacactttaaaatggccattgcccatctgtaatggcttccgtgccaccaaggtgatgaggaatcccaaaactgtgacagagaagcaggtgaaggagctgagaaCTGGAGCTCT s panTro5.chr2A 3545115 283 + 111504155 ctgactacagatttaatatcatctagcaacct-atgtggctgttaacatagctgttctgtctt--tggatggt-ttaaaatcatctgactcccgcaccacagagaagaatcattcttgcctccctctccagtcagcagctcacagccatggactgcaggacactccgccttgagaacactttaaaatggccattgcccatctgtaatggcttccgtgccaccaaggtggtgaggaatcccaaaactgtgacagagaagcaggtgaaggagctgagaaCTGGAGCGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3405859 283 + 114371477 ctgactacagatttaatatcatctagcaacct-atgtggctgttaacatagctgttctgtctt--tggatggt-ttaaaatcatctgactcccgcaccacagagaagaatcattcttgcctccctctccagtcagcagctcacagccatggactgcaggacactccgccttgagaacactttaaaatggccattgcccatctgtaatggcttccgtgccaccaaggtggtgaggaatctcaaaactgtgacagagaagcaggtgaaggagctgagaaCTGGAGCGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 283705 282 + 637652 ctgactacagatttaatatcacctagcaacct-atgtggctgttaacacagctgttctgtctt--tggatggt-ttaaaatcatctgattcccgcaccacagagaagaatcattcttgcctccctctccagtcaacagctcacagccatggactgcaggacactccgccttgagaacactttaaaatggccattgcccatctgtaatggcttccgtgccacc-aggtgctgaggaatcccaaaactgtgacagagaagcaggtgaaggagctgagaaCTGGAGCTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3080714 283 + 81552678 ctgactacagatttaatatcatctagcaacct-atgtggctgttaacatagctgttctgtctt--tggatggt-ttaaaatcatctgactcccgcaccacagagaagaatcattcttgccttcctctccactcaacagctcacagccacggactgcaggacactccgccttgagaacactttaaaatggccattgcccatctgtaacggcttccgtgccaccgaggtggtgaggaatcccaaaactgtgacagagaagcaggtgaaggagctgagaaCTGGAGCTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3342989 283 + 108979918 ctgactacggatttaatgtcatctagcaacct-atgcggctgttaacatagccgtgctgtttt--tggatggc-ttaaaatcatctgatgcccacaccacagagaagagtcgttcttgccttcctctccactcaacagctcacagccacggactgcgggacactctgccttgagaaagctttaaaatggccattgcctgtctgtaacggcttccgtgccaccagggtggtgaggaaccccaaacctgcgacagagaagcaggtgagagagctgagaatgGGAGCTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5053811 283 - 111193037 ctgactacggatttaatgtcatctagcaacct-atgcggctgttaacatagccatgctgtttt--tggatggc-ttaaaatcatctgatgcccacaccacagagaagagtcgttcttgccttcctctccactcaacagctcacagccagggactgcgggacactctgccttgagaaagctttaaaatggccattgcccgtctgtaacggcttccgtgccaccagggtggtgaggaaccccaaacctgcgacagagaagcaggtgagagagctgagaatgGGAGCTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3446429 283 + 3644372 ctgactacggatttaatgtcatctagcaacct-atgcggctgttaacatagccgtgctgtttt--tggatggc-ttaaaatcatctgatgcccacaccacagagaagagtcgttcttgccttcctctccactcaacagctcacagccacggactgcgggacactctgccttgagaaagctttaaaatggccattgcccgtctgtaacggcttccgtgccaccagggtggtgaggaaccccaaacctgggacagagaagcaggtgagagagctgagaatgGGAGCTCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3401753 283 - 10304083 ctgactacggatttaatgtcatctagcaacct-atgcagctgttaacatagccgtgctgtttt--tggatggt-ttaaaatcatctgatgcccacaccacagagaagagtcgttcttgccttcctctccactcaacagctcacagccacggactgcgggacactctgccttgagaaagctttaaaatgggcattgcccgtgtgtaacggcttccgtgccaccaaggtggtgaggaatcccaaacctgcgacagagaagcaggtgaaagagctgagaatgGGAGCTCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3504313 282 - 107702431 ctgactacggatttaatgtcatctagcaacct-gtgtggctgttaacatagccgtgctgtttt--tggatggt-ttaaaatcatctgatgcccacaccacagagaa-aatcgttcctgccttcctctccactcaacagctcacagccacggactgcaggacactccgccttgagaaagctttaaaatggccattgcccgtctgtaacggcttccgtgccaccaaggtggtgaggaatcccaaacctgcgacagagaagcaggtgaaagagctgagaatgGGAGCTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1034486 283 + 1565135 ctgactacggatttaatgtcatctagcaacct-atgcggctattaacatagccgtgctgtttt--tggatggt-ttaaaatcatctgatgcccacaccacagagaagagtcgttcttgccttcctctccactcaacagctcacagccacggactgcgggacactctgccttgagaaagctttaaaatgggcattgcccgtctgtaatggcttccgtgccaccaaggtggtgaggaatcccaaacctgcgacagagaagcaggtgaaagagctgagaatgGGAGCTCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3399129 283 - 13651311 ctgactacggatttgatgtcatctagcaacct-atgtggctgttaacatagctgtgctgtttt--tggatggt-ttaaaatcatctgatgcccataccacagagaaaaatcgttctcgccttggtctccactcaacagctcacagccacggactgcgggccactccgccttgagaaagctttaaaatggccattgtctgtctgtaacggcttccgtgccaccagggtggtgaggaatcccaaacctgtgacagagaagcaggtgaaagagctgagaatgGGAGCTCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3488219 284 - 108792865 ctgactacagatttaatatcatctaacaacccaatgaggctgttaaaatagctctgctagctt--tggatggt-ttcgagtcatctgacgcccacactacagagaagaatccttcttgccttcctctccacgaaacagctcacagccacggactacaggacactctgccttgaggatgctttaaaatggccattgcccatctgtagtggcttctgtgccaccaaggtggtgaggaatcccaaaactgtgacagagaagcaggtgaaagagctgagaaCTGGAGCTCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3132164 284 - 7082604 ctgactacagatttaataccatctgaaaacctcatgtggctgtgaaaatagctctgctgtctt--tggatggt-ttaaagtcatctgacgcctacactacaaagaagaatccttcttgccttcctctccacgaaacagctcacagccacggactacaggacactctgccttgaggatgctttaaaacagccattgcccatctgtaatggcttctgtgccaccaaggtggtgaggaatcccagaactgtgacagagaagcaggtgaaagagctgagaaCCGGAGCAGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 618200 283 + 5243153 ctgactacagatttgataccatctgacaacctaatgtggctgtgaaaatagctctgctgtctt--tggatggt-ttaaagtcatctgacgcccacactacagagaagaatccttcttgccttcctctccatgaaacagctcacagccacgggctacaggacactctgccttgaggatgctttaaaacggccattgcccatttgtaatggcttctgtgccaacaaggtggtgaggaatcccagagctgtggcagagaagcaggtg-aagagctgagaaCTGGAGCTCT i cebCap1.NW_016107454v1 C 0 I 647 s aotNan1.NW_018509326v1 3361231 284 + 7587287 ctgactacagatttaataccatctaacaacctaatgtggccgttacaacagctctgctgtctt--tggatggt-ttaaagtcatctgacacccacactacagagaagaatccttcttgccttcctctccacgaaacagctcacagccacggactacaggacactctgccttgaggatgctttaaaatggccattgcccatctgtaatggcttctgtgccaccaaggtggtgaggaatcccaaaactgtgacagagaagcaggtgaaagagccgagaaCTGGAGCTCT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2566945 216 + 5252280 ccaaccataaaattattgttgtt--gctactt--------cataactgtaattttgctactgttatgaatggtaatgtaaatatctgatatgcaggctgta--------tcatcattg--------------------------gtcgcgacccacagg----------ttgagaac-------cactgccgtagacaatccataagggcttcaatgccactgaaatcgtgaatgattcagaaact--aacaggacaagaggggaaggaattgTGTGCT-------- i otoGar3.GL873658 I 316 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I a score=7350.000000 s hg38.chr2_KI270769v1_alt 83611 1 + 120616 C s panTro5.chr2A 3545398 1 + 111504155 C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406142 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 283987 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3080997 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3343272 1 + 108979918 C i rheMac8.chr13 C 0 I 593 s macFas5.chr13 5054094 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3446712 1 + 3644372 C i macNem1.NW_012011978v1 C 0 I 593 s cerAty1.NW_012000820v1 3402036 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 I 1678 s chlSab2.chr14 3504595 1 - 107702431 C i chlSab2.chr14 C 0 I 593 s manLeu1.NW_012104432v1 1034769 1 + 1565135 C i manLeu1.NW_012104432v1 C 0 I 593 s colAng1.NW_012118821v1 3399412 1 - 13651311 C i colAng1.NW_012118821v1 C 0 I 592 s calJac3.chr14 3488503 1 - 108792865 C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3132448 1 - 7082604 C i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3361515 1 + 7587287 C i aotNan1.NW_018509326v1 C 0 I 541 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e otoGar3.GL873658 2567161 0 + 5252280 C e cebCap1.NW_016107454v1 618483 647 + 5243153 I a score=4693.000000 s hg38.chr2_KI270769v1_alt 83612 3 + 120616 CCC s panTro5.chr2A 3545399 3 + 111504155 CCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406143 3 + 114371477 CCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 283988 3 + 637652 CCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3080998 3 + 81552678 CCC i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5054095 3 - 111193037 TTC i macFas5.chr13 C 0 I 578 s calJac3.chr14 3488504 3 - 108792865 TTC i calJac3.chr14 C 0 I 576 s saiBol1.JH378218 3132449 3 - 7082604 TTC i saiBol1.JH378218 C 0 I 2 s otoGar3.GL873658 2567161 3 + 5252280 CTT i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e cebCap1.NW_016107454v1 618483 647 + 5243153 I e aotNan1.NW_018509326v1 3361516 541 + 7587287 I e colAng1.NW_012118821v1 3399413 592 - 13651311 I e manLeu1.NW_012104432v1 1034770 593 + 1565135 I e chlSab2.chr14 3504596 593 - 107702431 I e cerAty1.NW_012000820v1 3402037 1678 - 10304083 I e macNem1.NW_012011978v1 3446713 593 + 3644372 I e rheMac8.chr13 3343273 593 + 108979918 I a score=7425.000000 s hg38.chr2_KI270769v1_alt 83615 4 + 120616 CACC s panTro5.chr2A 3545402 4 + 111504155 CACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406146 4 + 114371477 CACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 283991 4 + 637652 CACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081001 4 + 81552678 CACC i nomLeu3.chr19 C 0 C 0 s saiBol1.JH378218 3132454 4 - 7082604 CACC i saiBol1.JH378218 I 2 I 595 s otoGar3.GL873658 2567164 4 + 5252280 CACT i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e cebCap1.NW_016107454v1 618483 647 + 5243153 I e aotNan1.NW_018509326v1 3361516 541 + 7587287 I e calJac3.chr14 3488507 576 - 108792865 I e colAng1.NW_012118821v1 3399413 592 - 13651311 I e manLeu1.NW_012104432v1 1034770 593 + 1565135 I e chlSab2.chr14 3504596 593 - 107702431 I e cerAty1.NW_012000820v1 3402037 1678 - 10304083 I e macNem1.NW_012011978v1 3446713 593 + 3644372 I e macFas5.chr13 5054098 578 - 111193037 I e rheMac8.chr13 3343273 593 + 108979918 I a score=66381.000000 s hg38.chr2_KI270769v1_alt 83619 71 + 120616 --CCTCAGTGCCtgtattagttggggctctctagagggacaggactcatagaatagat---gaatctatgaagggg s panTro5.chr2A 3545406 71 + 111504155 --CCTCAGTGCCtgtattagctggggctctctagagggacaggactcatagaatagat---gaatctatgaagggg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406150 71 + 114371477 --CCTCAGTGCCtgtattagttggggctctctagagggataggactcatagaatagat---gaatctatgaagggg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 283995 71 + 637652 --CCTCAGTGCCtgtattagtcggggctctctagagggacaggactcatagaatagat---gaatctatgaagggg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081005 71 + 81552678 --CCTCAGTGCCCgtattagtcggggctctctagagggacaggactcatagaatagat---gaatctatgaagggg i nomLeu3.chr19 C 0 C 0 s otoGar3.GL873658 2567168 62 + 5252280 GATCAGAAAGC---TGTCAGATGG-------CAAGGGGACAG----CAGAGTCCAGACACAGAGTCTGTGAGGGGG i otoGar3.GL873658 C 0 I 235 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e saiBol1.JH378218 3132458 595 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e cebCap1.NW_016107454v1 618483 647 + 5243153 I e aotNan1.NW_018509326v1 3361516 541 + 7587287 I e calJac3.chr14 3488507 576 - 108792865 I e colAng1.NW_012118821v1 3399413 592 - 13651311 I e manLeu1.NW_012104432v1 1034770 593 + 1565135 I e chlSab2.chr14 3504596 593 - 107702431 I e cerAty1.NW_012000820v1 3402037 1678 - 10304083 I e macNem1.NW_012011978v1 3446713 593 + 3644372 I e macFas5.chr13 5054098 578 - 111193037 I e rheMac8.chr13 3343273 593 + 108979918 I a score=77180.000000 s hg38.chr2_KI270769v1_alt 83690 85 + 120616 agtttattaggagaattgactctcgatcacaaggtgaggtcccacaat------------agctgaggagcaaggaagccagtccaagtcccagaac s panTro5.chr2A 3545477 85 + 111504155 agtttattaggagaattgactctcgatcacaaggtgaggtcccacaat------------agctgaggagcaaggaagccagtccaagtcccagaac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406221 85 + 114371477 agtttattaggagaattgactctcgatcacaaggtgaggtcccacaat------------agctgaggagcaaggaagccagtccaagtcccagaac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 284066 85 + 637652 agtttattaggagaattgactctcgatcacaaggtgaggtcccacaat------------agctgaggagcaaggaagccagtccaagtcccagaac i gorGor5.CYUI01015435v1 C 0 I 166 s nomLeu3.chr19 3081076 97 + 81552678 agtttattaggagaattgactctcgatcacaaggtgaggtcccacaatagaccatctgcaagctgaggagccaggaagccagtccaagtcccagaac i nomLeu3.chr19 C 0 I 167 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e saiBol1.JH378218 3132458 595 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e otoGar3.GL873658 2567230 235 + 5252280 I e cebCap1.NW_016107454v1 618483 647 + 5243153 I e aotNan1.NW_018509326v1 3361516 541 + 7587287 I e calJac3.chr14 3488507 576 - 108792865 I e colAng1.NW_012118821v1 3399413 592 - 13651311 I e manLeu1.NW_012104432v1 1034770 593 + 1565135 I e chlSab2.chr14 3504596 593 - 107702431 I e cerAty1.NW_012000820v1 3402037 1678 - 10304083 I e macNem1.NW_012011978v1 3446713 593 + 3644372 I e macFas5.chr13 5054098 578 - 111193037 I e rheMac8.chr13 3343273 593 + 108979918 I a score=16005.000000 s hg38.chr2_KI270769v1_alt 83775 3 + 120616 ctc s panTro5.chr2A 3545562 3 + 111504155 ctc i panTro5.chr2A C 0 I 167 s panPan2.chr2A 3406306 3 + 114371477 ctc i panPan2.chr2A C 0 I 167 s gorGor5.CYUI01015435v1 284317 3 + 637652 ctc i gorGor5.CYUI01015435v1 I 166 C 0 s nomLeu3.chr19 3081340 3 + 81552678 ctc i nomLeu3.chr19 I 167 C 0 s rheMac8.chr13 3343866 3 + 108979918 ctc i rheMac8.chr13 I 593 C 0 s macFas5.chr13 5054676 3 - 111193037 ctc i macFas5.chr13 I 578 C 0 s macNem1.NW_012011978v1 3447306 3 + 3644372 ctc i macNem1.NW_012011978v1 I 593 C 0 s chlSab2.chr14 3505189 3 - 107702431 ctc i chlSab2.chr14 I 593 C 0 s manLeu1.NW_012104432v1 1035363 3 + 1565135 ctc i manLeu1.NW_012104432v1 I 593 C 0 s colAng1.NW_012118821v1 3400005 3 - 13651311 ctc i colAng1.NW_012118821v1 I 592 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e saiBol1.JH378218 3132458 595 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e otoGar3.GL873658 2567230 235 + 5252280 I e cebCap1.NW_016107454v1 618483 647 + 5243153 I e aotNan1.NW_018509326v1 3361516 541 + 7587287 I e calJac3.chr14 3488507 576 - 108792865 I e cerAty1.NW_012000820v1 3402037 1678 - 10304083 I a score=27126.000000 s hg38.chr2_KI270769v1_alt 83778 5 + 120616 ggcaa s panTro5.chr2A 3545732 5 + 111504155 ggcaa i panTro5.chr2A I 167 C 0 s panPan2.chr2A 3406476 5 + 114371477 ggcaa i panPan2.chr2A I 167 C 0 s gorGor5.CYUI01015435v1 284320 5 + 637652 ggcaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081343 5 + 81552678 ggcaa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3343869 5 + 108979918 ggcga i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5054679 5 - 111193037 ggcga i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3447309 5 + 3644372 ggcaa i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3505192 5 - 107702431 ggcaa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1035366 5 + 1565135 ggcaa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3400008 5 - 13651311 ggcaa i colAng1.NW_012118821v1 C 0 C 0 s aotNan1.NW_018509326v1 3362057 5 + 7587287 ggcac i aotNan1.NW_018509326v1 I 541 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e saiBol1.JH378218 3132458 595 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e otoGar3.GL873658 2567230 235 + 5252280 I e cebCap1.NW_016107454v1 618483 647 + 5243153 I e calJac3.chr14 3488507 576 - 108792865 I e cerAty1.NW_012000820v1 3402037 1678 - 10304083 I a score=277352.000000 s hg38.chr2_KI270769v1_alt 83783 42 + 120616 gtctgctctttccaacttctgcctgctttattctggctgtga s panTro5.chr2A 3545737 42 + 111504155 gtctgctctttccaacttctgcctgctttattctggctgtga i panTro5.chr2A C 0 I 1 s panPan2.chr2A 3406481 42 + 114371477 gtctgctctttccaacttctgcctgctttattctggctgtga i panPan2.chr2A C 0 I 1 s gorGor5.CYUI01015435v1 284325 42 + 637652 gtctgctctttccaacttctgcctgctttattctggctgtga i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081348 42 + 81552678 gtccgctctttccaacttctgcctgctttattctggccgtgc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3343874 42 + 108979918 gtctgctctttccgacttctgcctgctttattctggctgtgc i rheMac8.chr13 C 0 I 5 s macFas5.chr13 5054684 42 - 111193037 gtctgctctttccgacttctgcctgctttattctggctgtgc i macFas5.chr13 C 0 I 5 s macNem1.NW_012011978v1 3447314 42 + 3644372 gtctgctctttccgacttctgcctgctttattctggctgtgc i macNem1.NW_012011978v1 C 0 I 5 s chlSab2.chr14 3505197 42 - 107702431 gtctgctctttccgacttctgcctgctttattctggctgcgc i chlSab2.chr14 C 0 I 5 s manLeu1.NW_012104432v1 1035371 42 + 1565135 gtctgctctttccaacttctgcctgctttattctggctgtgc i manLeu1.NW_012104432v1 C 0 I 5 s colAng1.NW_012118821v1 3400013 42 - 13651311 gtctgctctttccgacttctgcctgctttattctggctgcgc i colAng1.NW_012118821v1 C 0 I 5 s calJac3.chr14 3489083 41 - 108792865 gtctgctc-ttccagcttctgcctgctttattctggctgcgc i calJac3.chr14 I 576 C 0 s aotNan1.NW_018509326v1 3362062 41 + 7587287 gtctgctc-ttccagcctctgcctgctttattctggctgcgc i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e saiBol1.JH378218 3132458 595 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e otoGar3.GL873658 2567230 235 + 5252280 I e cebCap1.NW_016107454v1 618483 647 + 5243153 I e cerAty1.NW_012000820v1 3402037 1678 - 10304083 I a score=76557.000000 s hg38.chr2_KI270769v1_alt 83825 12 + 120616 tggcagctgaag s panTro5.chr2A 3545780 12 + 111504155 tggcagctgatg i panTro5.chr2A I 1 C 0 s panPan2.chr2A 3406524 12 + 114371477 tggcagctgatg i panPan2.chr2A I 1 C 0 s gorGor5.CYUI01015435v1 284367 12 + 637652 tggcagctgatg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081390 12 + 81552678 tggcagctgatg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3343921 12 + 108979918 tggcagctgatt i rheMac8.chr13 I 5 C 0 s macFas5.chr13 5054731 12 - 111193037 tggcagctgatt i macFas5.chr13 I 5 C 0 s macNem1.NW_012011978v1 3447361 12 + 3644372 tggcagctgatt i macNem1.NW_012011978v1 I 5 C 0 s chlSab2.chr14 3505244 12 - 107702431 tggcagccgatg i chlSab2.chr14 I 5 C 0 s manLeu1.NW_012104432v1 1035418 12 + 1565135 tggcagccgatt i manLeu1.NW_012104432v1 I 5 C 0 s colAng1.NW_012118821v1 3400060 12 - 13651311 tggcagccgatt i colAng1.NW_012118821v1 I 5 I 2 s calJac3.chr14 3489124 12 - 108792865 tgccggctgatg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3133053 12 - 7082604 tgccggctaatg i saiBol1.JH378218 I 595 C 0 s aotNan1.NW_018509326v1 3362103 12 + 7587287 tgccagctgatg i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e otoGar3.GL873658 2567230 235 + 5252280 I e cebCap1.NW_016107454v1 618483 647 + 5243153 I e cerAty1.NW_012000820v1 3402037 1678 - 10304083 I a score=167577.000000 s hg38.chr2_KI270769v1_alt 83837 24 + 120616 agatggtgcctacccagattaagg s panTro5.chr2A 3545792 24 + 111504155 agatggtgcccacccagattaagg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406536 24 + 114371477 agatggtgcccacccagattaagg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 284379 24 + 637652 agatggtgcctacccagattaagg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081402 24 + 81552678 agatggtgcccacccagattgagg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3343933 22 + 108979918 agatggtgcccacccaaactga-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5054743 23 - 111193037 agatggtgcccacccaaactga-g i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3447373 23 + 3644372 agatggtgcccacccaaactga-g i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3403715 24 - 10304083 agatggtgcccacccaaactgagg i cerAty1.NW_012000820v1 I 1678 C 0 s chlSab2.chr14 3505256 24 - 107702431 agatggtgcccacccaaactgagg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1035430 24 + 1565135 agatggtgcccacccaaactgaga i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3400074 24 - 13651311 agacggtgcccacccaaactgagg i colAng1.NW_012118821v1 I 2 C 0 s calJac3.chr14 3489136 23 - 108792865 tgatggggcccacccaga-tgtgg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3133065 24 - 7082604 agatggggcccacccagactgcgg i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3362115 24 + 7587287 agatgggacccacccagattgcgg i aotNan1.NW_018509326v1 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e otoGar3.GL873658 2567230 235 + 5252280 I e cebCap1.NW_016107454v1 618483 647 + 5243153 I a score=41466.000000 s hg38.chr2_KI270769v1_alt 83861 8 + 120616 gcgggtcg-- s panTro5.chr2A 3545816 8 + 111504155 gcgggtca-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406560 8 + 114371477 gcaggtca-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 284403 8 + 637652 gcgggtcg-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081426 8 + 81552678 gtgggtct-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3343955 8 + 108979918 gggggtct-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5054766 8 - 111193037 gggggtct-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3447396 8 + 3644372 gggggtct-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3403739 8 - 10304083 gggggtct-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3505280 8 - 107702431 gtgggtct-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1035454 8 + 1565135 gcgggtct-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3400098 8 - 13651311 gtgagtct-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3489159 8 - 108792865 gtgcgtct-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3133089 8 - 7082604 gtgcgtct-- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3362139 8 + 7587287 gtgcgtct-- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2567465 8 + 5252280 --GCGCCCCG i otoGar3.GL873658 I 235 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I e cebCap1.NW_016107454v1 618483 647 + 5243153 I a score=1053134.000000 s hg38.chr2_KI270769v1_alt 83869 125 + 120616 gcctcccccagcccactgactcaagtgttca-----tctcctttggcaacaccctcacagacacacccag------------gatcaatactttgcatcctt-----caattaa--------attgacactcagtattaaccttgacaGCGCCCA s panTro5.chr2A 3545824 125 + 111504155 gcctcccccagcccactgactcaagtgttca-----tctcctttggcaacaccctcacagacacacccag------------gatcaatactttgcatcctt-----caatcaa--------attgacactcagtattaaccttgacaGCGCCCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406568 125 + 114371477 gcctcccccagcccactgactcaagtgttca-----tctcctttggcaacaccctcacagacacacccag------------gatcaatactttgcatcctt-----caatcaa--------attgacactcagtattaaccttgacaGCGCCCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 284411 125 + 637652 gcctcccccagcccactgactcaagtgttca-----tctcctttggcaacaccctcacagacacagccag------------gatcaatactttgcatcctt-----caattaa--------attgacactcagtattaaccttgacaGCGCCCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081434 130 + 81552678 gcctctcccagcccactgactcaagtgtgaa-----tctcctttggcaacaccctcacagacacacccag------------gaacaatactttgcatccttcaatccaatcaa--------attgacactcagtattaaccttgacaGCGCCCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3343963 130 + 108979918 gcctctcccagtccactgactcagatgttca-----actcctttggcaacaccctcacagacacaccca-------------gaacaacactttgcatcctt-----caatccattcaggttgttgacactcagtattaaccat--caGCGCCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5054774 130 - 111193037 gcctctcccagtccactgactcagatgttca-----actcctttggcaacaccctcacagacacaccca-------------gaacaacactttgcatcctt-----caatccattcaggttgttgacactcagtattaaccat--caGCGCCCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3447404 130 + 3644372 gcctctcccagtccactgactcagatgttca-----actcctttggcaacaccctcacagacacaccca-------------gaacaacactgtgcatcctt-----caatccattcaggttgttgacactcagtattaaccat--caGCGCCCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3403747 132 - 10304083 gcctctcccagtccactgactcagatgttca-----actcctttggcaaccccctcacagacacaccca-------------gaacaacactttgcatcctt-----caatccattcaggttgttgacactcagtattaaccatcacaGCACCCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3505288 130 - 107702431 gcctctcccagtccagtgactcagatgttca-----cctcctttggcaacaccctcacagacacacccag------------gaacaacactttgcatcctt-----caatccattcaa---gttgacactcagtattaaccatcacaGCGCCCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1035462 132 + 1565135 gcctctcccagtccactgactcagatgttca-----actcctttggcaacaccctcacagacacaccca-------------gaacaacactttgcatcctt-----caatccattcaggttgttgacactcagtattaaccatcacaGCGCCCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3400106 130 - 13651311 gcctctcccagtccactgactcaaatgttca-----actcctttggcaacaccctcacagacacacccag------------gaacaacactttgcatcctt-----caatccattcaa---gttgacactcagtattaaccatcacaGCGCCCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3489167 130 - 108792865 gcctcccccagcccactgactcacatggcta-----gccccttcagcagcaccctcacagacacacccag------------gaacggtactttgcatccat-----caatccagtcaa---gttgacactaagtattaaccatcacaGTTCTCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3133097 129 - 7082604 gcctcccccagcccactgactcccat-gcca-----tccccttaggcagcaccctcacagacacacccag------------gaacaggacttagcatccgc-----tcatccagtcga---gttgacactcggtatgaaccgtcacaGCTCCCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 619130 129 + 5243153 gcctcccccagccccgtgactcacatggcca-----tccccttaggcagcaccctcacagacacaccca-------------gaacagtactttgcatccgt-----caatccagtcaa---gttgacactcagtatgaaccgtcacaGCTCCCA i cebCap1.NW_016107454v1 I 647 C 0 s aotNan1.NW_018509326v1 3362147 126 + 7587287 gcctcccccagcccactgactcacatggcca-----tcccctttggcagcaccctcacagacaaacccag------------gaacagtactttgcatccgt-----caatccagtcaa---gttgaca----gtattaaccgtcacaGCTCCCA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2567473 138 + 5252280 GCTCCTTTCCACGTGGTGACTCAGGGATCCAGACTGTTCCCTCAGGCTCCACGCAGCCTGGAACAGGAAGCTGCTGGTAGGAGAACAACACGCGAGGACCTC-----CAGCCA------------GACTCTCCCCACAGCCCCGCCTGCCTCCCA i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 606266 1276 + 2232271 I a score=3844.000000 s hg38.chr2_KI270769v1_alt 83994 1 + 120616 A s panTro5.chr2A 3545949 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406693 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 284536 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081564 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3344093 1 + 108979918 G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5054904 1 - 111193037 G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3447534 1 + 3644372 G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3403879 1 - 10304083 G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3505418 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1035594 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 I 41 s colAng1.NW_012118821v1 3400236 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3489297 1 - 108792865 A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3133226 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 619259 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3362273 1 + 7587287 A i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 607542 1 + 2232271 a i dasNov3.JH580157 I 1276 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e otoGar3.GL873658 2567611 0 + 5252280 C a score=179033.000000 s hg38.chr2_KI270769v1_alt 83995 24 + 120616 ----GGAGGGGAGGGCCAGACCCAGCGC s panTro5.chr2A 3545950 24 + 111504155 ----GGAGGGGAGGGCCAGACCCAGCGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406694 24 + 114371477 ----GGAGGGGAGGGCCAGACCCAGCGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 284537 24 + 637652 ----GGAGGGGAGGGCCAGACCCAGCGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081565 24 + 81552678 ----GGAGGGGAGGGCCAGACCCAGTGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3344094 24 + 108979918 ----CGAGGGGGGAGCCGGACCCAGTGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5054905 24 - 111193037 ----GGAGGGGGGAGCCGGACCCAGTGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3447535 24 + 3644372 ----GGACGGGGGAGCCGGACCCAGTGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3403880 24 - 10304083 ----GGAGGGGGGAGCCGGACCCAGTGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3505419 23 - 107702431 -----GGAGGGGGAGCCGGACCCAGTGC i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3400237 24 - 13651311 ----GGAGGGGGGAGGCGGACCCAGTGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3489298 24 - 108792865 ----GGAGGGGAGAGCCAGACCCTGCAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3133227 24 - 7082604 ----GGAGGGGAGAGCCAGGCCCTGCGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 619260 24 + 5243153 ----GGAGGGGAGAGCCAGACCCTGCGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3362274 24 + 7587287 ----GGAGGGGAGAGCCAGACCCTGCGC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2567611 17 + 5252280 ----------GGCAGTCAGA-TGGGTGC i otoGar3.GL873658 C 0 I 1 s dasNov3.JH580157 607543 22 + 2232271 ggaagaaagggaGAATCAGATA------ i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e manLeu1.NW_012104432v1 1035595 41 + 1565135 I a score=291906.000000 s hg38.chr2_KI270769v1_alt 84019 28 + 120616 ACAGTTCCAGTTTCTGCCACGGAA---ACAC s panTro5.chr2A 3545974 28 + 111504155 ACAGTTCCAGTTTCTGCCACGGAA---ACAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406718 28 + 114371477 ACAGTTCCAGTTTCTGCCACGGAA---ACAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 284561 28 + 637652 ACAATTCCAGTTTCTGCCACGGAA---ACAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081589 28 + 81552678 ACAGTTGTAGTTTCTCCCACAGAA---GCAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3344118 28 + 108979918 ACGGTTCTAGTTTCTGCCACAGGA---ACAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5054929 28 - 111193037 ACGGTTCTAGTTTCTGCCACAGGA---ACAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3447559 28 + 3644372 ACGGTTCTAGTTTCTGCCACAGGA---ACAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3403904 28 - 10304083 ACAGTTCTAGTTTCTGCCACAGGA---ACAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3505442 28 - 107702431 ACAGTTCTAGTTTCTGCCACAGGA---ACAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1035636 28 + 1565135 ACAGTTCTAGTTTCTGCCACAGGA---ACAC i manLeu1.NW_012104432v1 I 41 C 0 s colAng1.NW_012118821v1 3400261 28 - 13651311 ACGGTTCTAGTTTCTGCCACAGGA---GCGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3489322 28 - 108792865 ACAGCTCTGGTTTCTGCCCCAGGA---ACAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3133251 28 - 7082604 ACAGCCCTGGTTTCTGCCCCAGGA---ACAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 619284 28 + 5243153 ACAGCTCAGGCTTCTGCCACAGGA---ACAC i cebCap1.NW_016107454v1 C 0 I 109 s aotNan1.NW_018509326v1 3362298 28 + 7587287 ACAGCTCTGGTTTCTGCCACAGGA---ACAC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2567629 28 + 5252280 TTGCTCCTGGTTTCTGCCACAGAG---ATAC i otoGar3.GL873658 I 1 I 1 s dasNov3.JH580157 607565 31 + 2232271 GCATTTTCAGCATCTGCCACAGCAAGTACAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=26358.000000 s hg38.chr2_KI270769v1_alt 84047 4 + 120616 TGAC s panTro5.chr2A 3546002 4 + 111504155 TGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406746 4 + 114371477 TGAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 284589 4 + 637652 TGAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081617 4 + 81552678 TGGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3344146 4 + 108979918 TAAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5054957 4 - 111193037 TAAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3447587 4 + 3644372 TAAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3403932 4 - 10304083 TAAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3505470 4 - 107702431 TAAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1035664 4 + 1565135 TAAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3400289 4 - 13651311 TAAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3489350 4 - 108792865 TGAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3133279 4 - 7082604 TGAG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3362326 4 + 7587287 TGAC i aotNan1.NW_018509326v1 C 0 I 108 s otoGar3.GL873658 2567658 4 + 5252280 CAAA i otoGar3.GL873658 I 1 I 1 s dasNov3.JH580157 607596 4 + 2232271 TTAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 619312 109 + 5243153 I a score=765564.000000 s hg38.chr2_KI270769v1_alt 84051 109 + 120616 CATGTGTTGCTCTTA--------------AGGTCGGAGCTCCA-GGGCG-GCGTTTCCCCGGGTTtctgcgt------ttataagtgatgttagtat-ctgg-tttgcgtgtgcacag-----gtga-catctcaaaag s panTro5.chr2A 3546006 109 + 111504155 CATGTGTTGCTCTTC--------------AGGTTGGAGCTTCA-GGGCG-GCGTTTCCCCGGGTTTCTGCGT------TTATAAGTGATGTTAGTGT-CTGG-TTTGCGTGTGCACAG-----GTGA-CATCTCAAAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406750 109 + 114371477 CATGTGTTGCTCTTC--------------AGGTTGGAGCTCCA-GGGCG-GCGTTTCCCCGGGTTTCTGCGT------TTATAAGTGATGTTAGTGT-CTGG-TTTGCGTGTGCACAG-----GTGA-CATCTCAAAAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 284593 109 + 637652 CATGTGTTGCTCTTA--------------AGGTCGGAGCTCCA-GGGCG-GCATTTCCCCGGGTTTCTGCGT------TTATAAGTGATGTTAGTAT-CTGG-TTTGCGTGTGCACAG-----GTGA-CGTCTCAAAAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081621 124 + 81552678 GATGTGTTGCTCCTAAGCTCAGAGCCAATAGGCTGGAGCGCCAGGGGTG-CCATTTCCCCGGGCTTTTGCGT------TTATAAGTGATGTTAGTGT-CTGG-TTTGTGTGTGCACAG-----GTGA-CGTCTCAAAAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3344150 124 + 108979918 GATGTGTTGCTCCTAAACTCAGAAGCAATAGGTTGGAGCTCCAGGGGTG-GCATTTCCCCGGGTTTTTGCGT------TTGTGAGTGATGTTGGTGT-CTGG-TTTGTGTGTGCACAG-----GTGA-CACCTCAAAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5054961 124 - 111193037 GATGTGTTGCTCCTAAACTCAGAACCAATAGGTTGGAGCTCCAGGGGTG-GCATTTCCCCGGGTTTTTGCGT------TTGTGAgtgatgttggtgt-ctgg-tttgtgtgtgcacag-----gtga-catctcaaaag i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3447591 124 + 3644372 GATGTGTTGCTCCTAAACTCAGAACCAATAGGTTGGAGCTCCAGGGGTG-GCATTTCCCCGGGTTTTTGCGT------TTGTGAGTGATGTTGGTGT-CTGG-TTTGTGTGTGCACAG-----GTGA-CACCTCAAAAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3403936 124 - 10304083 GATGTGTTGCTCCTAAACTCAGAACCAGTAGGTTGGAACTCCAGGGGTG-GCATTTCCCCGGGTTTTTGCGT------TTGTGAGTGATGTTGGTGT-CTGG-TTTGTGTGTGCACAG-----GTGA-CATCTCAAAAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3505474 124 - 107702431 GATGTGTTGCTCCTAAACTCAGAACCAATAGGTTGGAGCTCCAGGGGTG-GCATTTCCCCGGgtttttgcat------ttgtgattgatgttggtgt-ctgg-tttgtgtgtgCACAG-----GTGA-CATCGCAAaag i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1035668 123 + 1565135 GATGTGTTGCTCCTAAACTCAGAACCAGTAGGTTGGAGCTCCAGGGGTG-GCATTTCCCCGGG-TTTTGCGT------TTGTGAGTGATGTTGGTGT-CTGG-TTTGTGTGTGCACAG-----GTGA-CATCTCAAAAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3400293 124 - 13651311 GACGTGTTGCTCCTAAACTCAGAACCAATAGGTTGGAGCTCCAGGGGTG-GCATTTCCCTGGGCTtttgcgt------ttgtgagtgatgttggtgt-ctgg-tttgtgtgtgCACAG-----GTGA-CATCTCAAAAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3489354 105 - 108792865 -----------------CACAGAACCAGTAGGGTGGAGCTCCG-GGGCT-GCACTGCCCTGGG-TTTTGTGT------TTACAAGTGACGCTGGTGT-CTGC-TCTGTGTGTGTACCG-----GTGA-CTTCTCAAAAG i calJac3.chr14 C 0 I 17 s saiBol1.JH378218 3133283 100 - 7082604 -----------------CACAGAAGCGGCAGGGTGGCGCCCCG-CGACT-GCACTG-CCTGGG-TTTTGTGT------TTA----TGACGTTGGTGT-CTGG-TTTGTGTGTGAACGG-----GTGA-CTTCTCAAAAG i saiBol1.JH378218 C 0 I 4 s otoGar3.GL873658 2567663 123 + 5252280 AATTTGTTATTCCAAGGGACAGAAGGAATAGATTGAAGTCCAGGGAGGC-ATATTGCCCCAGATTTTTGCAT------TTGTAAATGAAATCCATCT-CTGGATTTACAGATGCACA-------TAA-CTTCTCAGAAG i otoGar3.GL873658 I 1 C 0 s dasNov3.JH580157 607600 129 + 2232271 GATGTGATGTT---------GGAACCAGCATGGTGGAGTTCCAGGAATGCATGTTTCCCTAGATTTTTACATTAATAATTATAGTTGAAGTTAGTCCACGGG-CTTGTGTGTGAGCCATGTGCATGATCCTCTCGAAAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 619312 109 + 5243153 I e aotNan1.NW_018509326v1 3362330 108 + 7587287 I a score=248.000000 s hg38.chr2_KI270769v1_alt 84160 1 + 120616 -g s panTro5.chr2A 3546115 1 + 111504155 -G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406859 1 + 114371477 -G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 284702 1 + 637652 -G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081745 1 + 81552678 -G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3344274 1 + 108979918 -G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5055085 1 - 111193037 -g i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3447715 1 + 3644372 -G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3404060 1 - 10304083 -G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3505598 1 - 107702431 -g i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1035791 1 + 1565135 -G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3400417 1 - 13651311 -G i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2567786 1 + 5252280 -A i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 607729 1 + 2232271 C- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2062299 503 + 64289059 I e saiBol1.JH378218 3133383 4 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 619312 109 + 5243153 I e aotNan1.NW_018509326v1 3362330 108 + 7587287 I e calJac3.chr14 3489459 17 - 108792865 I a score=1208397.000000 s hg38.chr2_KI270769v1_alt 84161 225 + 120616 atatggtggctgttttctgtct-t----catataagttagaagcttgctttctctc-----tctctggaaaact--tgagtaatgtggaatgatctatt---ccctgaaggt----------------ttgagt-attcacct-aagaattgcctttgctgagcac-atgaggt----------------gtgctgtgtgcttttcctaatttattatt---atgaatctgccttagtgttg---tgtgcctgaggatttt-----tctgtgtttctgggaacca--t s panTro5.chr2A 3546116 225 + 111504155 ATATGGCGGCTGTTTTCTGTCT-T----CATGTAAGTCAGAAGCTTGCTTTCTCTC-----TCTCTGGAAAACT--TGAGTAATGTGGAATGATCTATT---CCCTGAAGGT----------------TTGAGT-ATTCACCT-AAGAATTGCCTTTGCTGAGCAC-GTGAGTT----------------GTGCTGTGTGCTTTTCCTAATTTATCATT---ATGAATCTGCCTTAGTGTTG---TGTGCCTGAGGATTTT-----TCTCTGTTTCTGGGAACCA--T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3406860 225 + 114371477 ATATGGCGGCTGTTTTCTGTCT-T----CATGTAAGTCAGAAGCTTGCTTTCTCTC-----TCTCTGGAAAACT--TGAGTAATGTGGAATGATCTATT---CCCTGAAGGT----------------TTGAGT-ATTCACCT-AAGAATTGCCTTTGCTGAGCAC-GTGAGGT----------------GTGCTGTGTGCTTTTCCTAATTTATCATT---ATGAATCTGCCTTAGTGTTG---TGTGCCTGAGGATTTT-----TCTCTGTTTCTGGGAACCA--T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 284703 224 + 637652 ATATGGTGGCTGTTTTCTGTGT-T----CATATAAGTTAGAAGCTTGCTTTCTCTC-----TCTCTGGAAAACT--TGAGTAATGTGGAATGATCTATT----CCTGAAGGT----------------TTGAGT-ATTCACCT-AAGAATTGCCTTTGCTGAGCAC-ATGAGGT----------------GTGCTGTGTGCTTTTCCTAATTTATTATT---ATGAATCTGCCTTAGTGTTG---TGTGCCTGAGGATTTT-----TCTGTGTTTCTGGGAACCA--T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081746 224 + 81552678 GTATGGCGGCTGTTTTctgtct-t----catataagttagaagcttgctttctctg-----tctctggaaaact--tgagtcatgtggaatgatctgtt---ccttgaaggt----------------ttaagt-attcacct-gagaattgcc-ttgctgagcac-atgaggt----------------gtgctgtgtgcttttcctaacttattgtt---attaatctgcctcagtgttg---tgtgcctgaggacttt-----tctgtgtttctgggagccg--t i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3344275 208 + 108979918 ATATGGCGG-------------------CATATAGGTTAGAAGCTGTCTTGCTCCC-----TCTCTGGAAAACTTTTGAGTAATATGGAATGATCTATT---CCTTGAAGGT----------------TTGAGT-ATTCACCT-AAGAATTGCCTTTGCTGAGCAC-ATGAGGT----------------GTGCTGTGTGCTTTTCATAATTTATTATT------AGTCTGCCTTAGTGTTG---TGTGCCTGAGGATTTT-----TC--TGTTTCTGGGAACAG--T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5055086 210 - 111193037 atatggcgg-------------------catataggttagaagctgtcttgctccc-----tctctggaaaacttttgagtaatatggaatgatctatt---ccttgaaggt----------------ttgagt-attcacct-aagaattgcctttgctgagcac-atgaggt----------------gtgctgtgtgcttttcataatttattatt------agtctgccttagtgttg---tgtgcctgaggatttt-----tctgtgtttctgggaacag--t i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3447716 210 + 3644372 ATATGGCGG-------------------CATATAGGTTAGAAGCTGTCTTGCTCCC-----TCTCTGGAAAACTTTTGAGTAATATGGAATGATCTATT---CCTTGAAGGT----------------TTGAGT-ATTCACCT-AAGAATTGCCTTTGCTGAGCAC-ATGAGGT----------------GTGCTGTGTTCTTTTCATAATTTATTATT------AGTCTGCCTTAGTGTTG---TGTGCCTGAGGATTTT-----TCTGTGTTTCTGGGAACAG--T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3404061 212 - 10304083 ATATGGCGG-------------------CATATAGGTTAGAAGCTGTCTTTCTCCC-----TCTCTGGAAAACTTTTGAGTAATATGGAATGATCTATT---CCTTGAAGGT----------------TTGAGT-ATTCACCT-AAGAATTGCCTTTGCTGAGCAC-ATGAGGT----------------GTGCTGTGTGCTTTTCATAATTTATTATT------AGTCTGCCTTAGTGTTG---TGTGCCTGAGGATTTT-----TCTGTGTTTCTGGGAACAGGTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3505599 208 - 107702431 atatggtgg-------------------catagaggttagaagctgtctttctccc-----tctctgg-aaacttttgagtaatatggaatgatctgtt---ccgtgaaggt----------------ttgagt-attcacct-aagaattgcctttgctgagcac-atgaggt----------------gtgctgtgtgcttttcataatttattatt------agtctgccttgg---tg---tgtgcctgaggatttt-----tctgtgtttctgggaacaggtt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1035792 210 + 1565135 ATATGGCGG-------------------CATATAGGTTAGAAGCTGTCTTTCTCCC-----TCTCTGGAAAACTTCTGAGTAATATGGAATGATCTATT---CCTTGAAGGT----------------TTGAGT-ATTCACCT-AAGAATTGCCTTTGCTGAGCAC-ATGAGGT----------------GTGCTGTGTGCTTTTCATAATTTATTATT------AGTCTGCCTTAGTGTTG---TGTGCCTGAGGATTTT-----TCTGTGTTTCTGGGAACAG--T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3400418 225 - 13651311 ATATGGCGG-------------------CATATAGGTTAGAAGCTGTCTTTCTCCC-----TCTCTGGAAAACTTTTGAGTAATATGGAATGATTTATT---CCTTGAAGGTTTGAGTATTCACCTAATTGAGT-ATTCACCT-AAGAATTGCCTTTGCTGAGCAC-ATGAGGT----------------GTGCTGTGTGCTTTTCATAAC---TTATT------AGTCTGCCTTAGTGTTG---TGTGCCTGAGGATTTT-----TCTGTGTTTCTGGGAACAGGTT i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2567787 232 + 5252280 ATACTGTGT--GTGTTCCATC-------TACATAAAACCAATGcc-tctttctctg-----tcctgtggaacattttgagtaatttgtaattatctatt---cc-tgacggt----------------ttgactaattcactt-aagaagcacctatgctgagctctaggagcg----------------acgctgaaca-ttttcataatttattgttgttactaacctgcttttgtgttgttctatacctgaggtttatctccctctctgtttctgggagcag--- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2062802 254 + 64289059 ATATGCTGC-TGCCTTCCTTCT-TAATGaaaaggagttaaagactttccttcttttgctaatctctggcaaatttcaga-tattttggaattagctgttgttccttgaaggt----------------ttgagtaagtcactg-atgaaatgcttgggccaagc---atgagtttttatttgtggcatcgatgctgattgcgcttcctaacttatcactgttagtagcgggcttttatgttc---ta-gcccgagggctct-----tctctgttcccgagatcag--t i canFam3.chr17 I 503 C 0 s dasNov3.JH580157 607730 229 + 2232271 ATTTGGTCACAGTTTGCTATTTGT----CCTTAAGAATAAGTtctttctgtgt--------tctctggaaaatt-ctgaatcgtttagaattacctgtt---ctgtgtaggt----------------ttgactaatccacctgaaaaaatgcttacaccaggtac-tttgggt----------------ctatagttaatgactggtaatttattattgttattaatcagctttagtggta---tgtatctgagattttc-----tttctatttccaggatcaa--t i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e saiBol1.JH378218 3133383 4 - 7082604 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e cebCap1.NW_016107454v1 619312 109 + 5243153 I e aotNan1.NW_018509326v1 3362330 108 + 7587287 I e calJac3.chr14 3489459 17 - 108792865 I a score=102470.000000 s hg38.chr2_KI270769v1_alt 84386 15 + 120616 tttggtaactgagag s panTro5.chr2A 3546341 13 + 111504155 TTTGGTAAC--AGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3407085 13 + 114371477 TTTGGTAAC--AGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 284927 15 + 637652 TTTGGTAACTGAGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081970 15 + 81552678 tttggtaattgagag i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3344483 13 + 108979918 TTT--TAATTTAGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5055296 13 - 111193037 ttt--taatttagag i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3447926 13 + 3644372 TTT--TAATTTAGAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3404273 13 - 10304083 TTT--TAATTTAGAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3505807 13 - 107702431 ttt--taatttagag i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036002 13 + 1565135 TTT--TAATTTAGAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3400643 13 - 13651311 TTT--TAATTTAGAG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3133387 15 - 7082604 TTTGGTGATTTAGAG i saiBol1.JH378218 I 4 C 0 s cebCap1.NW_016107454v1 619421 15 + 5243153 TTTGGTAATTTAGAG i cebCap1.NW_016107454v1 I 109 C 0 s aotNan1.NW_018509326v1 3362438 15 + 7587287 TTTGGTAATTTAGAG i aotNan1.NW_018509326v1 I 108 C 0 s otoGar3.GL873658 2568019 15 + 5252280 tttgctaatttagag i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2063056 15 + 64289059 tgtggcacgtcagcg i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 607959 15 + 2232271 tttggtaatttagag i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e calJac3.chr14 3489459 17 - 108792865 I a score=1367371.000000 s hg38.chr2_KI270769v1_alt 84401 156 + 120616 ttttctagaaagccacct--gtttggtccctgttttctcgtggattcgcacagagt-----aaaagacag-----------tgctc--ttaccattatttccatttcctt-gttctgcctgtagctatttctacttttacat------ttc-----------tgtttatgc-ttcctttttctGGATTAGTTTAT s panTro5.chr2A 3546354 156 + 111504155 TTTTCTAGAAAGCCACCT--GTTTGGTCCCTGTTTTCTCGTGGATTCGCACAGAGT-----AAAAGACAG-----------TGCTC--TTACCATTATTTCCATTTCCTT-GTTCTGCCTGTAGCTATTTCTACTTTTACAT------TTC-----------TGTTTATGC-TTCCTTTTTCTGGATTAGTTTAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3407098 156 + 114371477 TTTTCTAGAAAGCCACCT--GTTTGGTCCCTGTTTTCTCGTGGATTCGCACAGAGT-----AAAAGACAG-----------TGCTC--TTACCATTATTTCCATTTCCTT-GTTCTGCCTGTAGCTATTTCTACTTTTACAT------TTC-----------TGTTTATGC-TTCCTTTTTCTGGATTAGTTTAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 284942 154 + 637652 TTTTCTAGAAAGCCA-CT--GTTTGGTCCCCGTTTTCTCGTGGATTCGCACAGAGT-----AAAAGACAG-----------TGCTC--TTACCATTATTTCCATTTCCTT-GTTCTGCCTGTAGCTATTTCTACTTTTACAT------TTC-----------TGTTTATGC-TTCC-TTTTCTGGATTAGTTTAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3081985 166 + 81552678 ttttctagaaagccatct--gtttggtccccgttttctcgtggatttgcacagagt-----aaaagacagtaaaaaaataatgctc--ttaccattatttctgtttcctt-gttctgcctgtggctatttctgcttttacat------ttc-----------tgtttatgc-ttcc-ttttctggactagtttat i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3344496 154 + 108979918 TTTTCTAGAAAGCCACCT--GCTTTGTCCCTGTTTTCTCATGGATTTGCACGGAGT-----AAAAGACAG-----------TGCTC--TTATC---ACTTCAGTTTCCTT-TTTCTGCCTGTAGCTGTTCCTACTTTTACAT------TTC-----------TGTTTATGCTTTTCTTTTTCTGGATTAGTTTAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5055309 154 - 111193037 ttttctagaaagccacct--gctttgtccctgttttctcatggatttgcacggagt-----aaaagacag-----------tgctc--ttatc---acttcagtttcctt-tttctgcctgtagctgtttctacttttacat------ttc-----------tgtttatgcttttctttttctggattagtttat i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3447939 154 + 3644372 TTTTCTAGAAAGCCACCT--GCTTTGTCCCTGTTTTCTCATGGATTTGCACGGAGT-----AAAAGACAG-----------TGCTC--TTATC---ACTTCAGTTTCCTT-TTTCTGCCTGTAGCTGTTTCTACTTTTACAT------TTC-----------TGTTTATGCTTTTCTTTTTCTGGATTAGTTTAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3404286 154 - 10304083 TTTTCTAGAAAGCCACCT--GCTTTGTCCCTGTTTTCTCATGGATTTGCACGGAGT-----AAAAGACAG-----------TGCTC--TTATC---ACttcagtttcctt-tctctgcctgtagctgtttctacttttacat------ttc-----------tgtttatgcttttctttttctgGATTAGTTTAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3505820 153 - 107702431 ttttctagaaagccacct--gctttgtccctg-tttctcatggctttgcacggagt-----aaaagacag-----------tgctc--ttacc---acttcagtttcctt-tctctgcctgtagctttttctacttttacat------ttc-----------tgtttatgcttttctttttctggattagtttat i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036015 154 + 1565135 TTTTCTAGAAAGCCACCT--GCTTTGTCCCTGTTTTCTTACGGATTTGCACGGAGT-----AAAAGACAG-----------TGCTC--TTATC---ACTTCAATTTCCTT-TCTCTGCCTGTAGCTGTTTCTACTTTTACAT------TTC-----------TGTTTATGCTTTTCTTTTTCTGGATTAGTTTAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3400656 154 - 13651311 TTTTCTAGAAAGCCACCT--GCTTTGTCCCTGTTTTCTCATGGATTTGCATGGAGT-----AAAAGACAA-----------TGCTC--TTATC---ATTTCAGTTTCCTT-TTTCTGCCTGTAGCTGTTTCTACTTTTACAT------TTC-----------TGTTCATGCGTTTCTTTTTCTGGATTAGTTTAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3489476 160 - 108792865 TTTTCGAGAAAGCCACCTGTGCTTGGTCCCTGCTTTGTCATGGATTTGCATAGAAT--------AGACCA-----------GGCTC--TGAGCATCATTTCCATTTCCTTCTTTCCACCTGCAGCTGTTTCTCCTTGGACAT------TTC-----TG--TTTGTTTATGC-TTTCTTTTTCTGTCTTAGTTTGT i calJac3.chr14 I 17 C 0 s saiBol1.JH378218 3133402 147 - 7082604 TTTTCTAGAAAGCCCCCTGGGTTTGGCCGCTGCTTTGTCATGGACTTGCACAGAAT------AAAGACGG-----------TGCTC--TTACCATGACATCAATGACCTTGTTTCCA---------------CCTTGTACAT------TTC-----TG--TTTGTTTATGC-TTTCTTTTTCTAGCTTAGTTTGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 619436 162 + 5243153 TTTTCTAGAAAGCCACCTGTGTTTGGCCCCTGCTTTGTCATGGATTTGCACAGAAT------AAAGACAA-----------TGCTC--TTACCATTACTTCCATGTCCTTGTTTCCACCTGTAATTATTTCTCCTTTTACAT------TTC-----TG--TTTGTTTATGC-TTTCTTTTTCTGGCTTAGTTTGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3362453 157 + 7587287 TTTTCTAGAAAG-CACCTGTGTTTGCTCCCTGCTTTGTCATGGATTTGCACAGAAT------AAAGACAG-----------TGCTC--TTACCAGTATTCCCATTCCCTTTTTTCCACCTGTAGTTATTTCTCCCTTTACAT------TTC-----TG--TTTGTTTATG-----CTTTTTCTGGATTAGTTTGT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2568034 159 + 5252280 ttttctagaaaatcaccc--atttggttc--agtttcacatggattcgcatagagt-----aaaatatag-----------tcctcttttataattatcttaattttgct---tctaccaatgattattc---tttgtgcaa------ttcaaattct--gttgtctatgc-tttc-ttttcttgattagttttT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2063071 156 + 64289059 --tcctgggacatcacct--gtttgggccacgagttcacacatgtttgcgcggagttctgtaaactgcga-----------tgctc--tttca---tgatcgatttcttt---tctacctacagcgatttctcctttcacatttataattc-----------tgttcatgt-----cttctctTGGCTAATTCAT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 607974 161 + 2232271 ttttctagaatatcacct--atgtgatccataccttcacatttatttgcatagagttttgtaaaatacag-----------tcttcaatggtaattattttaatttcctt-----tgcatctagttactt---ctttttcat------ttc-----taattttgtttatgc-tttc-ttttcttgataagtttat i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=81439.000000 s hg38.chr2_KI270769v1_alt 84557 9 + 120616 AC-----ACTGttt s panTro5.chr2A 3546510 9 + 111504155 AC-----ACTGttt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3407254 9 + 114371477 AC-----ACTGttt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285096 9 + 637652 AC-----ACTGttt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082151 13 + 81552678 acactt-actattt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3344650 13 + 108979918 ACACTT-ACTAttt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5055463 13 - 111193037 acactt-actattt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3448093 13 + 3644372 ACACTT-ACTAttt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3404440 13 - 10304083 ACACTT-ACTAttt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3505973 13 - 107702431 atactt-actattt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036169 13 + 1565135 ACACTT-ACTAttt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3400810 13 - 13651311 ACACTT-ACTAttt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3489636 13 - 108792865 ACACTT-ATTATTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3133549 14 - 7082604 ACACTTAAttattt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 619598 13 + 5243153 ACACTC-Attattt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3362610 13 + 7587287 ACACtt-attattt i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2568193 10 + 5252280 ACA----CCTAttg i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2063227 9 + 64289059 CC-----ACTATTT i canFam3.chr17 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 608135 0 + 2232271 C a score=1320233.000000 s hg38.chr2_KI270769v1_alt 84566 176 + 120616 tttg-tct----t-----------------tttctttgtgagacaggatcttgctctgtctgccaggctggagtgcagtggcacaggtatgattcactgcagaactcctgggctcaagagattcacctgccttagcctctcatgtagctggggaccacag--------------------tgcttacggccacacctggtgcttacagccacacctgg s panTro5.chr2A 3546519 177 + 111504155 tttg-ttt----t-----------------tttctttgtgagacaggatcttgctctgtctgccaggctggagtgcagtggcgcaattatgactcactgcagaacccctgggctcaagagatccacctgccttagcctctcatgtagctggggaccacag-------------------gtgctgacggccacacctggtgctggcggccacacctgg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3407263 177 + 114371477 tttg-ctt----t-----------------tttctttgtgagacaggatcttgctctgtctgccaggctggagtgcagtggcgcaattatgactcactgcagaacccctgggctcaagagatccacctgccttagcctctcatgtagctggggaccacag-------------------gtgctgacggccacacctggtgctggcggccacacctgg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285105 195 + 637652 tttg--tt----t-----------------tttctttgtgagacaggatcttgctctgtctgccaggctggagtgcagtggcacaagtatgattcactgcagaactcctgggctcaagagatccacttgccttagcctctcatgtagctggggaccacaggtgcttacggccacacctggtgctgacggccacacctggtgcttacggccacacctgg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082164 162 + 81552678 tttgtttt----t-----------------tttgtttgtgaaacagtgtcttgctctttctgccaggctggactgcagtggcacaattatgattcactgcagaactcgtgggctcaagagatccacctgccttagcctctcatgtagctggggaccacag-------------------gtgcttacggccacacctggctc---------------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3344663 161 + 108979918 tttg-ttt----------------------tttgtttgtgagacagggtcttgctctgtctgccaggctggagtgcagtggcacaattaggattcactgcggaactcctgggctcgagagatccacctgtcttagcctctcatgtagttggggaccacag-------------------gtgcctacggccacacctggctca--------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5055476 161 - 111193037 tttg-ttt----------------------tttgtttgtgagacagggtcttgctctgtctgccaggctggagtgcagtggcacaattaggattcactgcggaactcctgggctcgagagatccacctgtcttagcctctcatgtagttggggaccacag-------------------gtgcctacggccacacctggctca--------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3448106 162 + 3644372 tttg-ttt----t--------------ttgtttgtttgtgagacagggtcttgctctgtctgccaggctggagtgcattggcacaattaggattcactgcggaactcctgggctcgagagatccacctgtcttagcctctcatgtagttggggaccacag-------------------gtgcctacggccacacctggc------------------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3404453 169 - 10304083 tttg-ttgtttgt--------------ttgtttgtttgtgagacagggtcttgctctgtctgccaggctggagtgcagtggcacaattaggattcactgcggaactcctgggctcgagagatccacctgtcttagcctctcatgtagttggggaccacag-------------------gtgcctacagccacacctggctca--------------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3505986 161 - 107702431 tttg-ttt----------------------tttgtttgtgagacagggtcttgctctgtctgccaggctggagtgcagtggcaccattaggagtcactgtggaactcctgggctcgagagagccacttgtcttagcctctcatgtagttggggaccacag-------------------gtgcttatggccacacctggctca--------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036182 169 + 1565135 tttg-ttttttgt--------------ttgtttgtttgtgagacagggtcttgctctgtctgccaggctggagtgcagtggcacaattaggattcactgcggaactcctgggctcgagagatccacctgccttagcccctcatgtagttggggaccacag-------------------gtgcctacggccacacctggctca--------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3400823 169 - 13651311 tttg-ttttttgttgttgttgttgttgttgtttgcttgtgagacagggtcttgctctgtctgcca--------------ggcacagttaggattcactgcggaactcctgggctcgagagatccacctgccttagcctctcatgtagttggggaccacag-------------------gtgcttatagccacacctggctca--------------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3489649 156 - 108792865 TTGG-GGt----------------------tttgtttttgaggcaaggtcttgctgt--cgcccaggctggagtgcagtggcacaattatggctcactgcagaactcctgggct-aagagat-ctcctgcctcaggctgtcgtgtagctggggaccacag-------------------gcgctta-ggccacacctggcttg--------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3133563 158 - 7082604 tttg-gtt----------------------tttggttttgaggcaaggtcttgctct-cctcccaggctggagtgcagtggcgtaattatggttcgctgcagaactcctgggct-aagagatcctcctgcctcaggctgtcatgtagctggggaccgcag-------------------acgctta-ggccacacctggcttt--------------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 619611 159 + 5243153 tttg-gtt----------------------tttgtttttgaggcaagatcttgctctgtctcccaggctggagtccagtggcacaattatggttcactgtaaaactcctgggct-aagagatcttcctgcctcaggctgtcatgtagctggggaccacag-------------------acgcttg-ggccacacctggcttt--------------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3362623 159 + 7587287 tttg-gtt----------------------tttgtttttgaggcaaggtcttgctctgtctcccaggctggagtgcagtggcttaattatggttcactgcagaactcctgggct-aagagatccccctgcctcaggctgtcatgtagctggggaccacag-------------------gcgctta-ggccacacctggcttt--------------- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2568203 155 + 5252280 tttg-ttt----t-----------------gtttgttttgagacagagtctcaagctgtcaccctgggtagagtgccgtggc---atcacagctcaaagcaacctcccactccttaagcgattctcttgcctcagatttccaagtagct-gggactacag-------------------gagcccgccacaatgctcggg------------------ i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2063236 0 + 64289059 C e proCoq1.NW_012151163v1 979578 2166 + 1238772 I e dasNov3.JH580157 608135 0 + 2232271 C a score=1270416.000000 s hg38.chr2_KI270769v1_alt 84742 165 + 120616 ctaattttcttttctttttt--------aatggagacaaggtctcact-ttgtt------gcccggtctggtcttgaactc-ctgaaattcagcgatcctcccacctcggcctcccaaagggctgagattacaggtgtgagccaccatgcccagccACTGTA--TTTCCTTTTTAATAGTGTC s panTro5.chr2A 3546696 165 + 111504155 ctaattttcttttctgtttt--------aatagagacaaggtctcact-ttgtt------gcccggtctggtcttgaactc-ctgaaattcagcgatcctcccacctcggcctcccgaagggctgagattacaggtgtgagccaccatgcccagccACTGTA--TTTCCTTTTTAATAGTGTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3407440 165 + 114371477 ctaattttcttttctgtttt--------aatagagacaaggtctcact-ttgtt------gcccggtctggtcttgaactc-ctgaaattcagcgatcctcccacctcggcctcccgaagggctgagattacaggtgtgagccaccatgcccagccACTGTA--TTTCCTTTTTAATAGTGTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285300 164 + 637652 ctaattttcttttct-tttt--------aatagagacaaggtctcact-ttgtt------gcccagtctggtcttgaactc-ctgaaattcagcgatcctcccaccttggcctcccaaagggctgagattacaggtgtgagccaccatgcccagccACTGTA--TTTCCTTTTTAATAGTGTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082326 163 + 81552678 --attttttttttctttttt--------aatagagacaaggtctcact-ttgtt------gcccagtctggtcttgaactc-ctgaaattaagcgatcctcccaccttggcctcccaaagggctgggattacaggtatgagccaccatgcccagacactgta--ttttctttttaatagtgtc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3344824 159 + 108979918 ------tttttttttttttt--------aatagagataaggtctcact-ttgtt------gcccagtctggtcttgaactc-ctgaaattaagcgatcctcccagcttggcctcccaaaggactgggattacaggtgtaagccatcatgcccagccACGGTA--TTTTCTTTTTAATAGTGTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5055637 159 - 111193037 ------tttttttttttttt--------aatagagataaggtctcact-ttgtt------gcccagtctggtcttgaactc-ctgaaattaagcgatcctcccagcttggcctcccaaaggactgggattacaggtgtaagccatcatgcccagccacggta--ttttctttttaatagtgtc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3448268 159 + 3644372 ------tttttttttttttt--------aatagagataaggtctcact-ttgtt------gcccagtctggtcttgaactc-ctgaaattaagcgatcctcccagcttggcctcccaaaggactgggattacaggtgtaagccatcatgcccagccACGGTA--TTTTCTTTTTAATAGTGTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3404622 161 - 10304083 ------tttttttttttttt------taaatagagataaggtctcact-ttgtt------gcccagtctggtcttgaactc-ctgaaattaagcgatcctcccaccttggcctcccaaaggactgggattacaggtgtaagccatcatgcccagccACGGTA--TTTTCTTTTTAATAGTGTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3506147 159 - 107702431 ------ttttttttttttta--------aatagagataaggtctcact-ttgtt------gcccagtctggtcttgaactc-ctgaaattaagcgatcctcccaccttggcctcccaaaggactgggattacaggtgtaagccatcatgcccagccacggta--ttttctttttaatagtgtc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036351 161 + 1565135 ----tttttttttttttttt--------aatagagataaggtctcact-ttgtt------gcccagtctggtcttgaactc-ctgaaattaagcgatcctcccaccttggcctcccaaaggactgggattacaggtgtaagccatcatgcccagccACGGTA--TTTTCTTTTCAATAGTGTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3400992 161 - 13651311 ----tttttttttttttttt--------aatagagataaggtctcact-ttgtt------gcccagtctggtcttgaagtc-ctgaaattaagcgatcctcccaccttggcctcccaaaggactgggattacaggtgtaagccatcatgcccagccatggca--ttttcttttttATAGTGTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3489805 159 - 108792865 ----cttttttttttttttt----------tgtagacagggtctcact-ttgtt------ctccagcctggtcttgaactc-ttgagattaagcgatcctcccaccttggcctcccaaagggctgggattagaggtgtgagccaccatgcccagccACTGTT--TTTTCTTTTTAATAGTGTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3133721 163 - 7082604 ----tttttttttttttttt------ttggtagagacagggactcact-ttgtt------ccccagtctagtcttgaactc-ttgagattaagcaatcctcccaccttggcctcccaaagggctgggattagaggtgtgagccaccacgcccagccACTGTT--TTTTCTTTTTAATACTATC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 619770 157 + 5243153 ----tttttttttttttttttttttttttgtagagacagggtctcact-ttgtt------ccccagtctggtcttgaactctttgagattaagcaatcctcccaccttggcctcccaaagggctgggattagaggtgtg-------------agccactgTT--TTTTCTTTTTAATAGTGTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3362782 153 + 7587287 ----ttttttttt----------------gtagagacagggtctcact-ttgtt------ccccagtctggtcttgaactc-ctgagattaagcgatcctcccaccttggcctcccaaagggctgggattagaggtgtgagccaccatgcccagccACAGTT--TTTTCTTTTTAATAGTATC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2568358 136 + 5252280 ------tatttttttgttgc--------aattg----------tcattgctgtttagcaggcctgggctgggtttgaaccc-gccagcctcagtgtatatggccggtgcactacccac-------------------tgaacca-caggctccgCCCCTATTGCTTGTTTTTTAAATAGTA-- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2063236 43 + 64289059 -----------------------------------------------------------------ATCTGGTGTC---TTC-TTCAAAT------------------------------AATCTGGGTTATTAGGTCTGGGC----------------------------------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 608135 40 + 2232271 ---------------------------------------------------------------------------------------------------------------ctacttatttgttgttttttcagata------------------------a--ctagctttttaat------ i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 979578 2166 + 1238772 I a score=664653.000000 s hg38.chr2_KI270769v1_alt 84907 52 + 120616 TTTTACTGATTTGTTTTCTACATATTCTGGAATACTTTTAATTGCATTTTTA s panTro5.chr2A 3546861 52 + 111504155 TTTTACTGATTTGTTTTCTACATATTCTGGAATTCTTTTAATTGCATTTTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3407605 52 + 114371477 TTTTACTGATTTGTTTTCTACATATTCTGGAATTCTTTTAATTGCATTTTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285464 52 + 637652 TTTTACTGATTTGTTTTCTACATATTGTGGAATACTTTTAATTGCATTTTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082489 52 + 81552678 ttttactgatttgttttctgcatattctggaatacttataattgcattttta i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3344983 52 + 108979918 CTTTACTGATTTGTTGTCTACATATTCTGGAATGCTTTTAATTGCCTTTTTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5055796 52 - 111193037 ctttactgatttgttgtctacatattctggaatgcttttaattgccttttta i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3448427 52 + 3644372 CTTTACTGATTTGTTGTCTACATATTCTGGAATGCTTTTAATTGCCTTTTTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3404783 52 - 10304083 CTTTACTGATTTGTTGTCTACATATTCTGGAATGCTTTTAATTGCCTTTTTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3506306 52 - 107702431 ctttactgatttgttttctacatattctggaatacttttaattgccttttta i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036512 52 + 1565135 CTTTACTGATTTGTTTTCTACATATTCTGGAATACTTTTAATTGCCTTTTTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3401153 52 - 13651311 CTTTACTGATTTGTTTTCTACATACTCTGGAATACTTTTCATTGCCTTTTTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3489964 52 - 108792865 TTTTACTGATTTGTTTTCTACATATTCTAGAATACTTTTACTTGCCTTTTTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3133884 52 - 7082604 TTTTGCTGATTTGTTTTCTACATGTTCTGGAATACTTTTACTTGCCTTTTTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 619927 52 + 5243153 TTTTGCTGATTTGTTTTCTACATATTCTGGAATACTTTTACTTGCCTTTTTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3362935 52 + 7587287 TTTTGCTGATTTGTTTTCTACATATTCTAGAATACTTTTACTTGCCTTTTTA i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 981744 52 + 1238772 TTTTATTGATTTATTTTCTAGACATTCTGTAAAACTTATAATTGCCTCTTTA i proCoq1.NW_012151163v1 I 2166 I 3 s otoGar3.GL873658 2568494 52 + 5252280 TTTTATAGATTTATTTTGTCAGTACTCTACAATCGTTATAATTACCTTTTTA i otoGar3.GL873658 C 0 I 3 s canFam3.chr17 2063279 42 + 64289059 ----------TTCTTTGCTAGATATTCTGCAATAATTTTAATTGCCTTTTGA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 608175 41 + 2232271 -----------tggtttctggatattctgctatgcttttaattgccatttta i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2667704 2295 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I a score=115397.000000 s hg38.chr2_KI270769v1_alt 84959 7 + 120616 ---TGTTTAA s panTro5.chr2A 3546913 7 + 111504155 ---TGTTTAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3407657 7 + 114371477 ---TGTTTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285516 7 + 637652 ---TGTTTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082541 7 + 81552678 ---tgtttaa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3345035 7 + 108979918 ---TGTTTAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5055848 7 - 111193037 ---tgtttaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3448479 7 + 3644372 ---TGTTTAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3404835 7 - 10304083 ---TGTTTAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3506358 7 - 107702431 ---tgtttaa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036564 7 + 1565135 ---TGTTTAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3401205 7 - 13651311 ---TGTTTAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3490016 7 - 108792865 ---TGTTTAa i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3133936 7 - 7082604 ---TGTTTAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 619979 7 + 5243153 ---CGTTTAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3362987 7 + 7587287 ---TGTTTAA i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2669999 7 - 159902609 ---TGTTTAA i micMur3.chr8 I 2295 I 1 s proCoq1.NW_012151163v1 981799 7 + 1238772 ---TGCTTAA i proCoq1.NW_012151163v1 I 3 I 1 s otoGar3.GL873658 2568549 7 + 5252280 ---TGCTTTA i otoGar3.GL873658 I 3 I 1 s canFam3.chr17 2063321 7 + 64289059 ---CATTTGA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 608216 10 + 2232271 tATTGTTTAA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91434365 1607 - 120129022 I a score=61152.000000 s hg38.chr2_KI270769v1_alt 84966 5 + 120616 TTTTT s panTro5.chr2A 3546920 5 + 111504155 TTTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3407664 5 + 114371477 TTTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285523 5 + 637652 TTTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082548 5 + 81552678 ttttt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3345042 5 + 108979918 TTTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5055855 5 - 111193037 ttttt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3448486 5 + 3644372 TGTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3404842 5 - 10304083 TTTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3506365 5 - 107702431 ttttt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036571 5 + 1565135 TTTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3401212 5 - 13651311 TTTTT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3133943 5 - 7082604 TTTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 619986 5 + 5243153 TTTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3362994 5 + 7587287 TTTTT i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2670007 5 - 159902609 TCTTC i micMur3.chr8 I 1 C 0 s proCoq1.NW_012151163v1 981807 5 + 1238772 TCTTT i proCoq1.NW_012151163v1 I 1 C 0 s otoGar3.GL873658 2568557 4 + 5252280 T-TTT i otoGar3.GL873658 I 1 C 0 s canFam3.chr17 2063328 5 + 64289059 TCTTT i canFam3.chr17 C 0 I 293 s dasNov3.JH580157 608226 5 + 2232271 TTGTT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91434365 1607 - 120129022 I e calJac3.chr14 3490023 0 - 108792865 C a score=1678495.000000 s hg38.chr2_KI270769v1_alt 84971 138 + 120616 TCAGTTGCTCCTAACTTTTAG-AAATCGGTAGGA--TTTTGTATCCTAATTACATTTTAATAATTCTGAAAATGTCAAGTTACTTTCTAATCATCAGGAAAGTCAGTGGGTAGCAAAGAATATCCCAAGATTTCTCTGTTA s panTro5.chr2A 3546925 138 + 111504155 TCAGTTGCTCCTAACTTTTAG-AAATCGGTAGGA--TTTTATATCCTAATTACATTTTAATAATTCTGAAAATGTCAACTTACTTTCTAATCATCAGGAAAATCGGTGGGTAGCAAAGAATATCCCAAGATTTCTCTGTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3407669 138 + 114371477 TCAGTTGCTCCTAACTTTTAG-AAATCGGTAGGA--TTTTATATCCTAATTACATTTTAATAATTCTGAAAATGTCAACTTACTTTCTAATCATCAGGAAAATCGGTGGGTAGCAAAGAATATCCCAAGATTTCTCTGTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285528 138 + 637652 TCAGTTGCTCCTAACTTTTAG-AAATCGGTAGGA--TTTTATATCCTAATTACATTTTAATAATTCTGAAAATGTCAGGTTACTTTCTAATCATCAGGAAAATCAGTGGGTAGCAAAGAAAATCCCAAGATTTCTCTGTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082553 138 + 81552678 tcagttgctcctaactttTAG-AAATCGGTAGGA--TTTTATATCCTAATTACATTTTAATAATTCTGAAAATGTCAACTTACTTTCTAATCATCAGGAAAATCAGTGGGTAGCAAAGAATATCCTAAGATTTCTCTGTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3345047 138 + 108979918 TCAGTTGCTCCTAACTTTTAG-AAATCGGTAGAA--TTTTATATCCTAATAACATGTTAATAATTCTGAAAATGTCAACTTACTTTCTAATCATCAGGAAGATCAGTGGGTAGCAAAGAATTTCCCAAGATTTCTCTGTTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5055860 138 - 111193037 tcagttgctcctaacttttaG-AAATCGGTAGAA--TTTTATATCCTAATAACATGTTAATAATTCTGAAAATGTCAACTTACTTTCTAATCATCAGGAAGATCAGTGGGTAGCAAAGAATTTCCCAAGATTTCTCTGTTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3448491 138 + 3644372 TCAGTTGCTCCTAACTTTTAG-AAATCGGTAGAA--TTTTATATCCTAATAACATGTTAATAATTCTGAAAATGTCAACTTACTTTCTAATCATCAGGAAGATCAGTGGGTAGCAAAGAATTTCCCAAGATTTCTCTGTTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3404847 138 - 10304083 TCAGTTGCTCCTAACTTTTAG-AAATCGGTAGAA--TTTTATATCCTAATAACATGTTAATAATTCTGAAAATGTCAACTTGCTTTCTAATCATCAGGAAGATCAGTGGGTAGCAAAGAATTTCCCAAGATTTCTCTGTTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3506370 138 - 107702431 tcagttgctcctaactttTAG-AAATCGGTAGAA--TTTTATATCCTAATACCATGTTAATAATTCTGAAAATGTCAACTTACTTTCTAATCATCAGGAAGATCAGTGGGTAGCAAAGAATTTCCCAAGATTTCTCTGTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036576 138 + 1565135 TCAGTTGCTCCTAACTTTTAG-AAATCGGTAGAA--TTTTATATCCTAATAACATGTTAATAATTCTAAAAATGTCAACTTATTTTCTAATCATCAGGAAGATCAGTGGGTAGCAAAGAATTTCCCAAGATTTCTCTGTTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3401217 135 - 13651311 TCAGTTGCTCCTAACTTTTAG-AAATCGGTAGAA--TTTTATATCCTAATAACATGTTAATAATTCTGAAAATGTCAACTTACCTTCTA---ATCAGGAAGATCAGTGGGTAGCAAAGAATATCCCAAGATTTCTCTGTTC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3133948 133 - 7082604 TCAGTTGCTC----CTTTTAG-AAATCGGTAGGA--TTTTATATCCTAATTACATTTTAATAATTCTGAAAATATCAACTTACTTTTCAATCTTCAGG-AAATCAGTGGCTAGCAAAGAATATCCCAAGATGGCTCTGTTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 619991 138 + 5243153 TCAGTTGCTCCTAACTTTTAG-AAATCGGTAGGA--TTTTATATCCTAATTACATTTTAATAATTCTGAAAATATCAACTTACTTTTCAATCATCAGGAAAATCAGTGGGTAGCAAAGAATATCCCAAGATGGCTCTGTGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3362999 134 + 7587287 TCAGTTGCTC----CTTTTAG-AAATCGGTAGGA--TTTTATATCCTAATTACATTTTAATAATTCTGAAAATATCAACTTACTTTTAAATCATCAGGAAAATCAGTGGGTAGCAAAGAATATCCCAAGATGGCTCTGTTG i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2670012 137 - 159902609 TCAGCTGCTTCTAACTCTCAG-AAATCGGTAGGA--TTTTAAATCCCAATTACGTCTTAATAATTCTGAAGATGTAAACTTGCTTTCAAATCATCA-GATAATCAGTGGGCGGCAAAGAATATACCAAAATTTCTCTGTTA i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 981812 137 + 1238772 TCAGCTGCTTCTAACTCTTAG-AAATCGGTAGGA--TTTTAAATCCCAATTACATCTTAATAATTACGAAGATGTAAACTTGCTTTCAGATCATCA-GACAATCCATGGGTGGCAAAGAATATACCAAGATTTCTCTGTTA i proCoq1.NW_012151163v1 C 0 I 1860 s otoGar3.GL873658 2568561 132 + 5252280 TCAGCTGCTTCTAACTTTTAG--AATAGGTTGGACTTTTTAAATACTAATTATGTTTTAATAATTATGAAAATATGAA----TTTTCAAATCATCA-GATGATCAGTGAGTGGCAAAGAATATACCAAAATT--ACTATTA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 608231 137 + 2232271 TAAGCTACCTCCTATTCATAGAAAATTGGTAGAA--TTTTAAATCCTGATT-CATTTTAATAATTATGAAAATATAAACTTATTTTCTAATCA-CAGGAAAATCAGTAGGTGGCAAAGAATATACAAAGATTTGTCTGTAA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2063333 293 + 64289059 I e calJac3.chr14 3490023 0 - 108792865 C a score=65008.000000 s hg38.chr2_KI270769v1_alt 85109 6 + 120616 TCTTCC s panTro5.chr2A 3547063 6 + 111504155 TCTTCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3407807 6 + 114371477 TCTTCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285666 6 + 637652 TCTTCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082691 6 + 81552678 CCTTCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3345185 6 + 108979918 TCTTCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5055998 6 - 111193037 TCTTCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3448629 6 + 3644372 TCTTCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3404985 6 - 10304083 TCTTCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3506508 6 - 107702431 TCTTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036714 6 + 1565135 TCTTCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3401352 6 - 13651311 TCTTCC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3134081 6 - 7082604 TCTTCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 620129 6 + 5243153 TCTTCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3363133 6 + 7587287 TCGTCC i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2670149 6 - 159902609 TCTTCC i micMur3.chr8 C 0 I 1832 s otoGar3.GL873658 2568693 6 + 5252280 TCTTCC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 608368 3 + 2232271 TGT--- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2063333 293 + 64289059 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I e calJac3.chr14 3490023 0 - 108792865 C a score=935324.000000 s hg38.chr2_KI270769v1_alt 85115 111 + 120616 TCTGAGACA----TTGAGT--AAAGTCCCATGCCAGCCTCAGGAGGCCTtgcagtgcggaggatcagca-cacggtctgggcgttggaca-gcctgggtgttga--ccacagtgttctgtg s panTro5.chr2A 3547069 111 + 111504155 TCTGAGACA----TTGAGT--AAAGTCCCATGCCAGCCTCAGGAGGCCTtgcagtgtggaggatcagca-catggtctgggcgttggaca-gcctgggtgttga--ccacactgttctgtg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3407813 111 + 114371477 TCTGAGACA----TTGAGT--AAAGTCCCATGCCAGCCTCAGGAGGCCTtgcagtgtggaggatcagca-catggtctgggcgttggaca-gcctgggtgttga--ccacactgttctgtg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285672 110 + 637652 TCTGAGACA----TTGAGT--AAAGTCCCATGCCAGCCTCAGGAGGCC-tgcagtgcggaggatcagca-cacggtctgggcattggaca-gcctgggtgttga--ctacagtgttctgtg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082697 119 + 81552678 TCTAAGACATTGTTTGAGTACAAAGTCCCAT-CCGGCCTCAGgaggccttgcagggcggaggatcagca-catggtctgggcgttgggcaggcctgggtgttgaccccacactgttgtgtg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3345191 118 + 108979918 TCTAAGACATTGTTTCAGT--AAAGTCCCATGCCAGCCTCAGgaggccttgcggtgcggaggatcagca-catggtctgggctttgggcaggcctgggtgttgaccccacactgttctgtg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5056004 118 - 111193037 TCTAAGACATTGTTTCAGT--AAAGTCCCATGCCAGCCTCAGgaggccttgcggtgcggaggatcagca-catggtctgggctttgggcaggcctgggtgttgaccccacactgttctgtg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3448635 118 + 3644372 TCTAAGACATTGTTTCAGT--AAAGTCCCATGCCAGCCTCAGgaggccttgcggtgcggaggatcagca-catggtctgggctttgggcaggcctgggtgttgaccccacactgttctgtg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3404991 118 - 10304083 CCTAAGACATTGTTTCAGT--AAAGTCCCATGCCAGCCTCAGgaggccttgcggtgcggaggatcagca-catggtctgggctttgggcaggcctgggtgttgaccccacactgttctgtg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3506514 117 - 107702431 TCTAAGACATTGTTTCAGT--AAAGTCCCATGCTAGCCTCAGgaggccttgcggtgcgga-gatcagca-catggtctgggctttgggcaggcctgggtgttgaccccacactgttctgtg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036720 118 + 1565135 TCTAAGACATTGTTTCAGT--AAAGTCCCATGCCAGCCTCAagaggccttgcggtgcggaggatcagca-catggtctgggctttgggcaggcctgggtgttgaccccacactgttctgtg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3401358 117 - 13651311 TGTAAGACATTGTTTCAGT--CAAGT-CCACGCCAGCCTCAGgaggccttgcggtgcggaggatcagca-cacggtctgggctttgggcaggcctgggtgttgaccccacactgttctgtg i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3134087 117 - 7082604 TCTGAGACATTGTTTCAGT--AAAGCCCCGTGCCAGCCCCATGAGGCCTTGCCgtgcggaggatcggca-cgtggtctgggtgctggacaggcctgggtgtcgaccccaca-cgttctgtg i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 620135 117 + 5243153 TCGGAGACATTGTTTCAGT--AAAGCCCCGTGCCAGCCCCATGAGACCTTGCCgtgcggaggatcggca-cgtggtctcggcgttggacaggcctgggtgttgaccccaca-tgttctgtg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3363139 117 + 7587287 TCCGAGACGTTGTTTCAGT--AAAGCCGCGTGCCAGCCCCATGAGGCCTTGCCAtgcggaggatcggca-cgtggtctgggcgttggacaggcctgggtgtcaaccccaca-tgttctgtg i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2568699 115 + 5252280 -ATAAAATATTGTTTCTGTA-AAAGTTCCTTGTTGACCT-ATTTGTCCTCACAGTATGG--GGTCAGTG-TGTAGTCTGggaattgggcagacctggggtttgagacctaggggttcgatg i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 608371 102 + 2232271 -------------TTAATT--AAAGTCTTGCATGAGTTTTGTAAGTCCAtatagtatagattgtcaacaccctggcctgaggcttagaccagcttttgagtc----ctagtctgttacatc i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2063333 293 + 64289059 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I e calJac3.chr14 3490023 0 - 108792865 C a score=973660.000000 s hg38.chr2_KI270769v1_alt 85226 109 + 120616 ttagctgtg-tgacctcagaaaattgtctcatctttccaagcccgacg----acttcatctagaaagcgaagctag-c-gacagcatctgcatccca-ggctg-tcgcgagggtcagg s panTro5.chr2A 3547180 109 + 111504155 ttagctgtg-tgacctcagaaaattgtctcatctttccaagcctgacg----acttcatctagaaagcgaagctag-c-gacagcatctgcatccca-ggctg-tcgcgagggtcagg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3407924 109 + 114371477 ttagctgtg-tgacctcagaaaattgtctcatctttccaagcctgacg----acttcatctagaaagcgaagctag-c-gacagcatctgcatccca-ggctg-tcgcgagggtcagg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285782 110 + 637652 ttagctgtg-tgacctcagaaaattgtctcatctttccaagcccgacg----acttcatctagaaagcgaagctag-cggacggcatctgcatccca-ggctg-tcgcgagggtcagg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082816 108 + 81552678 ttagctgtg-tgacctcagaaaattgtctcatctttccaagccttact----ttttcatctagaaagcgaagctag-t-gacagcatctgcatcaca-ggctg-ttacgagggtcaG- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3345309 108 + 108979918 gtagctgtg-tgacctcagaaaattgtctcgtctttccaagccttact----ttctcatctag-aagcaaagctag-t-gacagcgtctgcatcaca-ggctg-ttgggaggttcagg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5056122 108 - 111193037 gtagctgtg-tgacctcagaaaattgtctcgtctttccaagccttact----ttctcatctag-aagcaaagctag-t-gacagcgtctgcatcaca-ggctg-ttgggaggttcagg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3448753 108 + 3644372 gtagctgtg-tgacctcagaaaattgtctcgtctttccaagccttact----ttctcatctag-aagcaaagctag-t-gacagcgtctgcatcaca-ggctg-ttgggaggttcagg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3405109 108 - 10304083 gtagctgtg-tgacctcagaaaattgtctcgtctttccaagccttact----ttttcatctag-aagcaaagctag-t-gacagcgtctgcatcaca-ggctg-ttgcgaggttcagg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3506631 108 - 107702431 gtagctgtg-tgacctcagaaaattgtctcgtctttccaagccttact----ttttcatctag-aagcgaagctag-t-gacagcgtctgcatcaca-ggcct-tggcgaggttcagg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036838 108 + 1565135 gtagctgtg-tgacctcagaaaattgtctcgtctttccaagccttact----ttttcatctag-aagcaaagctag-t-gacagcgtctgcatcaca-ggctg-ttgcgaggttcagg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3401475 108 - 13651311 gtagctgtg-tgacctcagaaaattgtctcgtctttccaagccttacg----tcttcatctag-aagcaaagctag-t-gacagcgtctgcatcaca-ggccg-ttgcgaggttcagg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3490023 106 - 108792865 ttagctgtg-tgacctcagaaaattgcctcatcttgccaggcctcact----gtttcatttagaaagcaaagctgg-t-gacagcatctgcagcaca-ggc---taacgagggcagg- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3134204 100 - 7082604 ttagctgtgatgacctcagaaaattgcctcatctttccaagcctcact----gtttcatctagaaagcaaagctgg-t-gacagctTTGGCCA-----------TTACGAGGGCAGG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 620252 109 + 5243153 ttagctgtg-tgacctcagaaaattgccccatctttccaagcctcact----ctttgatctggaaagcaaagctgg-t-ggcagcatctgcaggaca-ggctgttaacaaggccaag- i cebCap1.NW_016107454v1 C 0 I 14 s aotNan1.NW_018509326v1 3363256 108 + 7587287 ttagctgtg-tgacctcagaagattgccgcatcttgccaagcctcact----gtttgatccagaaagcaaagccgg-t-gacagcgtctgcagcaca-ggctg-ttacgaggGCGGG- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2568814 108 + 5252280 tctgctgtg-tgatctgcaaaaatcaccaaacccccctgagcctcact-----tctcacctagaaaatgaagccag-t-aatcagatctgggtcatg-gcctg-tcatgagattcaga i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 608473 115 + 2232271 ttagttgtg-caacctaagaaaattgcttaaccttgctaagcctcattatttttttcatctagaaaatgaaaacagat-gataatatctacatcacagggttg-ttataacagctaaa i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2063333 293 + 64289059 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I a score=83823.000000 s hg38.chr2_KI270769v1_alt 85335 14 + 120616 cgagctgtgcttgt s panTro5.chr2A 3547289 14 + 111504155 cgagctgtgcttgt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3408033 14 + 114371477 cgagctgtgcttgt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285892 14 + 637652 cgagctgtgcttgt i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3345417 13 + 108979918 cgagctgtgtttg- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5056230 13 - 111193037 cgagctgtgtttg- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3448861 13 + 3644372 cgagctgtgtttg- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3405217 13 - 10304083 cgagctgtgtttg- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3506739 12 - 107702431 c-agctgtgtttg- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036946 13 + 1565135 cgagctgtgtttg- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3401583 13 - 13651311 cgagctgtgtttg- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3490129 13 - 108792865 agagctgtgtctg- i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3134304 13 - 7082604 AGAGCTGTGCCCG- i saiBol1.JH378218 C 0 I 1 s aotNan1.NW_018509326v1 3363364 13 + 7587287 AGAGCCGTGTCTG- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2568922 13 + 5252280 tgggctgtatgtg- i otoGar3.GL873658 C 0 I 4 s dasNov3.JH580157 608588 13 + 2232271 tgagacgtgtttg- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2063333 293 + 64289059 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I e cebCap1.NW_016107454v1 620361 14 + 5243153 I e nomLeu3.chr19 3082924 0 + 81552678 C a score=382584.000000 s hg38.chr2_KI270769v1_alt 85349 46 + 120616 aagcgcttgccacggccgccggcacacgttaa--------TCTTGATCGGTCTT s panTro5.chr2A 3547303 46 + 111504155 aagcgcgtgccacggccgccggcacacgttaa--------TCTTGATCGGTCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3408047 46 + 114371477 aagcgcgtgccacggccgccggcacacgttaa--------TCTTGATCGGTCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285906 46 + 637652 aagcgcttgccacagccgccggcacacgttaa--------TCTTGATCGGTCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082924 32 + 81552678 --------------GCCGCCGGCACATGTTAA--------TCTTGATCAGTCTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3345430 46 + 108979918 aaacacttgctgcagctgccagcacatgttaa--------TCTTGGTCAGtctt i rheMac8.chr13 C 0 I 343 s macFas5.chr13 5056243 46 - 111193037 aaacacttgctgcagctgccagcacatgttaa--------TCTTGGTCAGtctt i macFas5.chr13 C 0 I 291 s macNem1.NW_012011978v1 3448874 46 + 3644372 aaacacttgctgcagctgccagcacatgttaa--------TCTTGGTCAGTCtt i macNem1.NW_012011978v1 C 0 I 340 s cerAty1.NW_012000820v1 3405230 46 - 10304083 aaagacttgctgcagctgccagcacatgttaa--------TCTTGGTCAGtctt i cerAty1.NW_012000820v1 C 0 I 344 s chlSab2.chr14 3506751 39 - 107702431 aagcacttgccg-------cagcacACGTTAA--------TCTTGGTCAGTCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1036959 46 + 1565135 aaacacttgctgcagctgccagcacatgttaa--------TCTTGGTCAGtctt i manLeu1.NW_012104432v1 C 0 I 518 s colAng1.NW_012118821v1 3401596 46 - 13651311 aaacacttgccgcagccgccagcacatgttaa--------tcgTGGTCAGTCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3490143 45 - 108792865 -aacactcgccgcagtcgccggcacGTGTTCA--------TCTTGATCGGTCTT i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3134318 44 - 7082604 -AACACTCGCCACAG-CGCCGGCTCGCGTTAA--------TCTTGATCGGTCTT i saiBol1.JH378218 I 1 C 0 s cebCap1.NW_016107454v1 620375 46 + 5243153 aaacattctccacagCCATCAGCATGTGTTAA--------TTTTGATCGGTCTT i cebCap1.NW_016107454v1 I 14 C 0 s aotNan1.NW_018509326v1 3363377 46 + 7587287 AAACACTCGCCACAGCCACCAGCAGGCGTTAA--------TCTTGATCAGTCTT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2568939 54 + 5252280 aagcactcagcacagttcctagtgcatgttaggACTTTACTATTATTAAATCCC i otoGar3.GL873658 I 4 C 0 s dasNov3.JH580157 608601 48 + 2232271 aagcacttagcacagtatctggcacatattaagt------acttgataaatcat i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2063333 293 + 64289059 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I a score=77465.000000 s hg38.chr2_KI270769v1_alt 85395 16 + 120616 GATGATGGGCTGTAAT s panTro5.chr2A 3547349 16 + 111504155 GATGATGGGCTGTAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3408093 16 + 114371477 GATGATGGGCTGTAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285952 16 + 637652 GATGATGGGCTGTAAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082956 16 + 81552678 GATGATGAGCTGTAAT i nomLeu3.chr19 C 0 C 0 s chlSab2.chr14 3506790 16 - 107702431 GATTATGAGCTGTAAT i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3401642 15 - 13651311 GATTATGAGCTG-AAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3490188 16 - 108792865 GATTATGAGCTGTAAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3134362 16 - 7082604 GATTATGAGCTGTAAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 620421 16 + 5243153 GATGATGAGCTCTCAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3363423 16 + 7587287 GATTATGAGCTGTAAT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2568993 16 + 5252280 GATTGTTAGCTATAAT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 608649 16 + 2232271 ttttattaGCTATAAC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2063333 293 + 64289059 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I e manLeu1.NW_012104432v1 1037005 518 + 1565135 I e cerAty1.NW_012000820v1 3405276 344 - 10304083 I e macNem1.NW_012011978v1 3448920 340 + 3644372 I e macFas5.chr13 5056289 291 - 111193037 I e rheMac8.chr13 3345476 343 + 108979918 I a score=83825.000000 s hg38.chr2_KI270769v1_alt 85411 13 + 120616 CATCTTCAGTTCA s panTro5.chr2A 3547365 13 + 111504155 CATCTTCAGTTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3408109 13 + 114371477 CATCTTCAGTTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285968 13 + 637652 CGTCTTCAGTTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082972 13 + 81552678 CATCTTCAGTTCA i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5056580 13 - 111193037 cATCTTCAGATCA i macFas5.chr13 I 291 C 0 s chlSab2.chr14 3506806 13 - 107702431 CATCTTCAGATCA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3401657 13 - 13651311 CATCTTCGGATCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3490204 13 - 108792865 CATCTTCGGATCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3134378 13 - 7082604 CATCTTCAGATCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 620437 13 + 5243153 CATCTTCAGATCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3363439 13 + 7587287 CATCTTCAGATCA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2569009 13 + 5252280 AATCTCTGGGTCA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 608665 13 + 2232271 AATCTTCAGGTCA i dasNov3.JH580157 C 0 I 474 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2063333 293 + 64289059 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I e manLeu1.NW_012104432v1 1037005 518 + 1565135 I e cerAty1.NW_012000820v1 3405276 344 - 10304083 I e macNem1.NW_012011978v1 3448920 340 + 3644372 I e rheMac8.chr13 3345476 343 + 108979918 I a score=93817.000000 s hg38.chr2_KI270769v1_alt 85424 22 + 120616 GTGTCTCACACGGTCCTGTTAG s panTro5.chr2A 3547378 22 + 111504155 GTATCTCACACGGTCCTGTTAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3408122 22 + 114371477 GTATCTCACACGGTCCTGTTAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 285981 22 + 637652 GTGTCTCACACGGTCCTGTTAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3082985 22 + 81552678 GTATCTCACACGGTCCTGCTAG i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5056593 21 - 111193037 GTATCACA-GTGGTCCTGTTAA i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3506819 21 - 107702431 GTATCACA-GCGGTCCTGTTAA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3401670 21 - 13651311 GAATCACA-GCGGTCCTGTTAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3490217 22 - 108792865 ATATCAAACACTGTCCTGTTAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3134391 22 - 7082604 GTATCAAACACTGTCCTGTTAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 620450 22 + 5243153 ATATCAAACACTCTCCTGTTAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3363452 22 + 7587287 ATATCAAACACTGTCCTGTTAA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2569022 22 + 5252280 ATATGAAACATGGTCCTGTTAA i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2063333 293 + 64289059 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I e dasNov3.JH580157 608678 474 + 2232271 I e manLeu1.NW_012104432v1 1037005 518 + 1565135 I e cerAty1.NW_012000820v1 3405276 344 - 10304083 I e macNem1.NW_012011978v1 3448920 340 + 3644372 I e rheMac8.chr13 3345476 343 + 108979918 I a score=5616.000000 s hg38.chr2_KI270769v1_alt 85446 1 + 120616 A s panTro5.chr2A 3547400 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3408144 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 286003 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3083007 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5056614 1 - 111193037 A i macFas5.chr13 C 0 I 17 s chlSab2.chr14 3506840 1 - 107702431 A i chlSab2.chr14 C 0 I 17 s colAng1.NW_012118821v1 3401691 1 - 13651311 A i colAng1.NW_012118821v1 C 0 I 17 s calJac3.chr14 3490239 1 - 108792865 A i calJac3.chr14 C 0 I 17 s saiBol1.JH378218 3134413 1 - 7082604 C i saiBol1.JH378218 C 0 I 17 s cebCap1.NW_016107454v1 620472 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 I 17 s aotNan1.NW_018509326v1 3363474 1 + 7587287 A i aotNan1.NW_018509326v1 C 0 I 17 s otoGar3.GL873658 2569044 1 + 5252280 A i otoGar3.GL873658 C 0 I 28 s dasNov3.JH580157 609152 1 + 2232271 A i dasNov3.JH580157 I 474 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2063333 293 + 64289059 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I e manLeu1.NW_012104432v1 1037005 518 + 1565135 I e cerAty1.NW_012000820v1 3405276 344 - 10304083 I e macNem1.NW_012011978v1 3448920 340 + 3644372 I e rheMac8.chr13 3345476 343 + 108979918 I a score=22672.000000 s hg38.chr2_KI270769v1_alt 85447 2 + 120616 CA s panTro5.chr2A 3547401 2 + 111504155 CA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3408145 2 + 114371477 CA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 286004 2 + 637652 CA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3083008 2 + 81552678 CA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3345819 2 + 108979918 CA i rheMac8.chr13 I 343 C 0 s macFas5.chr13 5056632 2 - 111193037 CA i macFas5.chr13 I 17 C 0 s macNem1.NW_012011978v1 3449260 2 + 3644372 CA i macNem1.NW_012011978v1 I 340 C 0 s cerAty1.NW_012000820v1 3405620 2 - 10304083 CA i cerAty1.NW_012000820v1 I 344 C 0 s chlSab2.chr14 3506858 2 - 107702431 CA i chlSab2.chr14 I 17 C 0 s manLeu1.NW_012104432v1 1037523 2 + 1565135 CA i manLeu1.NW_012104432v1 I 518 C 0 s colAng1.NW_012118821v1 3401709 2 - 13651311 CC i colAng1.NW_012118821v1 I 17 C 0 s calJac3.chr14 3490257 2 - 108792865 CA i calJac3.chr14 I 17 C 0 s saiBol1.JH378218 3134431 2 - 7082604 CA i saiBol1.JH378218 I 17 C 0 s cebCap1.NW_016107454v1 620490 2 + 5243153 CA i cebCap1.NW_016107454v1 I 17 C 0 s aotNan1.NW_018509326v1 3363492 2 + 7587287 CA i aotNan1.NW_018509326v1 I 17 C 0 s otoGar3.GL873658 2569073 2 + 5252280 CC i otoGar3.GL873658 I 28 C 0 s dasNov3.JH580157 609153 2 + 2232271 CA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e canFam3.chr17 2063333 293 + 64289059 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I a score=2010371.000000 s hg38.chr2_KI270769v1_alt 85449 237 + 120616 GGAGATGCAGGCGTTCGAGCTGAGGGCCGCGTCACGGAGCCCATGCTGCCTTCGGTTTCTTTTTAGTCCGCAAGTGGGAAATCGATAGTAGTGGACTTCAAACGGCTTCGGA---CTGT-GCAGACGACGGGCAGCGATGGACAGATGCCATTCAGTGTGTG---GTGTGTGTGCACGCCTGTGTTTTCTCTTGTTTCATTCTGT----TTTTTCTTCCTCCTCGTATGGTAT-TTC------TTTTGTG-GGATA s panTro5.chr2A 3547403 237 + 111504155 GGAGATGCAGGCGTTCGAGCTGAGGGCCGTGTCACGGAGCCCATGCTGCCTTTGGTTTCTTTTTAGTCCGCAAGTGGGAAGTCGATAGTAGTGGACTTCAAACCGCTTCAGA---CTGT-GCAGACAGTGGGCAGTGATGGACAGATGCCATTCAGTGTGTG---GTGTGTGTGCACGCCTGTGTTTTCTCTTGTTTCATTCTGT----TTTTTCTTCCTCCTCGAATGGTAT-TTC------TTTTGTG-GGATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3408147 237 + 114371477 GGAGATGCAGGCGTTCGAGCTGAGGGCCGTGTCACGGAGCCCATGCTGCCTTTGGTTTCTTTTTAGTCCGCAAGTGGGAAGTCGATAGTAGTGGACTTCAAACCGCTTCGGA---CTGT-GCAGACAGTGGGCAGTGATGGACAGATGCCATTCAGTGTGTG---GTGTGTGTGCACGCCTGTGTTTTCTCTTGTTTCATTCTGT----TTTTTCTTCCTCCTCGAATGGTAT-TTC------TTTTGTG-GGATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 286006 236 + 637652 GGAGATGCAGGCATTCGAGCTGAGGGCCGCGTCACGGAGCCCGTGCTGCCTTCAGTTTCTTTTTAGTCCTCAAGTGGGAAGTCGATAGTAGTGGACTTCAAACAGCTTCAGA---CTGT-GCAGACGACGGGCAGCGATGGACAGATGCCATTCAGTGTGTG---GTGTGTGTGCACACCTGTG-TTTCTCTTGTTTCATTCTGT----TTTTTCTTCCTCCTCGTATGGTAT-TTC------TTTTGTG-GGATA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3083010 237 + 81552678 GGAGATGCAGGTGTTCGAGCTGAGGGCCATGTCAGAGAGCCCATGCTGCCTGTGGTTTCTTTTGAGTCAGCAAGTGGGAAGTCTATAGTAGTGGACTTCAAACCGCGTCGGA---CTGT-GCAGACGACAGGCAGCGATGGACACATGCCATTCAGTATGTG---GTGTGTGTGCATGCCTGTGTTTTCTCTTGTTTCATTCTGT----TTTTTCTTCCTCCTCGTATGGTAT-TTC------TTTTGTG-AGATA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3345821 233 + 108979918 GGAGATGCAGGCATTCGAGCTGAGGGCCGTATCATGGAGCCCATGCTGCCTTTCGTTTCTTTTTAGTCAGCAAGTGGGAAGTCCATAGTAGTGGACTTCAAACCCCTTCGGA---CTGT-GCAGACGAAGGGCAGCGATGGACAAACGCTGTTCCATGTGTG---GTGTGTGTGCACGCCTGT-TTTCTTTGTGTTTCAT--TG-----TTTTTCTTCCTCCTCGTGTGGTAT-TTC------TTTTGTG-GGGTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5056634 233 - 111193037 GGAGATGCAGGCATTCGAGCTGAGGGCCGTATCATGGAGCCCATGCTGCCTTTCGTTTCTTTTTAGTCAGCAAGTGGGAAGTCCATAGTAGTGGACTTCAAACCCCTTCGGA---CTGT-GCAGACGAAGGGCAGCGATGGACAAACGCTGTTCCATGTGTG---GTGTGTGTGCACGCCTGT-TTTCTTTGTGTTTCAT--TG-----TTTTTCTTCCTCCTCGTGTGGTAT-TTC------TTTTGTG-GGGTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3449262 233 + 3644372 GGAGATGCAGGCATTCGAGCTGAGGGCCGTATCATGGAGCCCATGCTGCCTTTGGTTTCTTTTTAGTCAGCAAGTGGGAAGTCCATAGTAGTGGACTTCAAACCCCTTCGGA---CTGT-GCAGACGAAGGGCAGCGATGGACAAACGCTGTTCCATGTGTG---GTGTGTGTGCACGCCTGT-TTTCTTTGTGTTTCAT--TG-----TTTTTCTTCCTCCTCGTGTGGTAT-TTC------TTTTGTG-GGGTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3405622 231 - 10304083 GGAGACGCAGGCATTCGAGCTGAGGGCCATATCATGGAGCCCATGCTGCCTTTGGTTTCTTTTTAGTCAGCAAGTGGGAAGTCCATAGTAGTGGACTTCAAACCCCTTCGGA---CTGT-GCAGACGAAGGGCAGCGATGGACAAACGCTGTTCCATGTGTG-----GTGTGTGCACACCTGT-TTTCTTTGTGTTTCAT--TG-----TTTTTCTTCCTCCTCGTGTGGTAT-TTC------TTTTGTG-GGGTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3506860 235 - 107702431 GGAGACGCAGGCATTCGAGCCGAGGGCCGTATCATGGAGCCCATGCTGCCTTTGGTTTCTTTTTAGTCAGCAAGTGGGAAGTCCATAGTAGTGGGCTTCAAACCGCTTCGGA---CTGT-GCAGACGAAGGGCAGCGATGGACAAACGCCGTTCCATGTGTG---GTGTGTGTGCACGCCTGT-TTTCTTTGTGTTTCATTCTG-----TTTTTCTTCCTCCTCGTGTGGTGT-TTC------TTTTGTG-GGGTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1037525 229 + 1565135 GGAGACGCAGGCATTCGAGCTGAGGGCCATATCATGGAGCCCATGCTGCCTTTGGTTTCTTTTTAGTCAGCAAGTGGGAAGTCCATAGTAGTGGACTTCAAACCCCTTCGGA---CTGT-GCAGACGAAGGGCAGCGATGGACAAACGCTGTTCCATGTGTG---GTGTGTGTGCACGCCTGT-----TTTGTGTTTCAT--TG-----TTTTTCTTCCTCCTCGTGTGGTAT-TTC------TTTTGTG-GGGTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3401711 230 - 13651311 GGAGACGCAGGCATTC-AGCTGAGGGCCGTATCAGGGAGCCCAGGCTGCCTCTGGTTTCTTTGTAGTCAGCAAGTGGGAAGTCCATAGTAGTGGACTTCAAACCGCGTCGGA---CTCT-GCAGACGAAGGGCAGCGATGGACAAGCGCCGTTCTGTGTGTG---GTGTGTGTGCACGCCTGT-----TTTGTGTTTCATTCTG-----TTTTTCTTCCGCCTCGTGTGGTAT-TTC------TTTTGTG-GGGTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3490259 228 - 108792865 GGACACGCAGCTGTGGGAGCTGAGGGCCACGCTGTGGAGCCCACACGGCCTTTGGTTTCTCTTCAGTCAGCAAGTGAGAAGTCCACAGTAGTAAACTCGAGAC-ACTTCAGA-----CT-GCAGGCGA-GGGCCGCGGTGGACAG--GCCACTGTGTGTG-------GTCTGTGCACACCTGC---ATTTTGTGTCTCATTCTGTTTCATTTTTCTCCCTCCTCATACGGTAT-ATC------TTCTGTG-GGGTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3134433 232 - 7082604 GGACACCCAGCTGTGGGAGCTGAGGGCCACGCTGTGGAGCCCACATGGCCTCTGGTTTCTTTTTAGTCAGCAAGTGAGAAGTCCACAGTCGTAGACTTGAGAG-GCTTCAGA---CCCC-GCGGGCGA-GGGCCGTGGTGGACGGGAGCTGCTGCGTGTG-------GCGTGTGCTCGCCTGC---GTTTTGTGTCTCGTTCTGTTTCGTTTTTCTCCCTCCTCGTAAGGTAT-TTC------TTTTGTG-GGGTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 620492 232 + 5243153 GGACACCCAGTTGTGGGAGCTGAGGGCCACGTAGTGGAGTCCACACGGCCTCTGGTTTCTTTTTAGTCAGCAAGTGAGAAGTCCACAGTAGTAGACTTGAGAC-GCTTCAGA---CTGT-GCAGGCGA-GAGCCGCGGTGGACAGGGGCCACTGTGTGTG-------GTGTGTGCACACCTGC---GTTTTGTGTCTCGTTCTGTTTCGTTTTTCTCCCTCCTCGTACGGTAC-TTC------TTTTGTG-GGGTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3363494 218 + 7587287 GGACACGCAGCTGTGGGAGCTGAGGGCCACGTCGTGGAGCCCACACGGCCTCTGGTTTCTTTTTAGTCAGCAAGTGAGAAGTCCACGGTCGTAGACTTGAGAC-GCTTCAGA---CTGT-GCAGGCGA-GGGCCGTGGTGGACGGG-GCCACTGTGTGTG-------GTGTGTGTACGCCTGC---GTTTTGTGTCTCGTTCTGTTTCGTTTTTCTCCCTCCTTGTACGGTAT---------------------TA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2569075 216 + 5252280 GGAAACTCCGAGGTTCAAGCTGAGGGCCGTGCTGTGGAGCCCACACTGACTTCAGTTTCTTTTTGTCCAATTAGTGAG--GTCTGTGGTCAGCGGCTCCAGACCCCTGCAGA---CGGCAGCAGGCGGGAGGCAG---TGGATAAGTGCTGTC---TGCTTT---CTGTTTGTGT-----TGC---TTTTTTGGTT------TG-----TTTTTCTTCCTCCTAATGTGATGTTTTC------TTCTGCG-GGACA i otoGar3.GL873658 C 0 I 1031 s canFam3.chr17 2063626 200 + 64289059 GGAGGTTCAGATGTTCGAACTG-GGGACATGGCGTGGAGCCTACA--GACTCCAGCTTCTTTGACGTCACCTAGGGAGATGTCTGCAGCGGAGGACTTCAAAC---TGTGGA--------GCACAAGAGGGGAAGCAAGCGACAAATGCCATT--------------------------CTGC---CTTCTGTG--------CGT----CTTCTCTTCCTACTAACGTGGCTT-GACTTGTGGTTTTGTGTGGGTG i canFam3.chr17 I 293 I 1 s dasNov3.JH580157 609155 239 + 2232271 GGAAATTCAGATGTTCAGACTTAGGGCCATGTCATTGAACCCACACTGACCTTAGTTTCTTCTTAGTCAGTAAGTAAAAA--CTGTCATAGAAGACTTCAAACTGCTTTACAACTCTGTAGTAGAAGAAGGGAAGCAATGGGTACATGCCATTCTGTTTTCTTGTGTGTTTGTTGTTACTTGT---Gtgttttgttttgttttg-----ctttgttCCCCTCTAATGTGGTATGTTC------TTTTGGG-GGGTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I a score=6652.000000 s hg38.chr2_KI270769v1_alt 85686 1 + 120616 A s panTro5.chr2A 3547640 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3408384 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 286242 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3083247 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3346054 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5056867 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3449495 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3405853 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3507095 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1037754 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3401941 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3490487 1 - 108792865 A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3134665 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 620724 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3363712 1 + 7587287 T i aotNan1.NW_018509326v1 C 0 C 0 s canFam3.chr17 2063827 1 + 64289059 G i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 609394 1 + 2232271 G i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I e otoGar3.GL873658 2569291 1031 + 5252280 I a score=4320651.000000 s hg38.chr2_KI270769v1_alt 85687 438 + 120616 CAGcaacagttgtgaagggcctgagatgttatcctgtttcca---------agctgtggagttagctgccactttcatggatgctggc-aaaaaatgtaagattcctacgttagagaggaaggctatttatta--cacagcaacagcagtacagccagagtggcat---tcttcccaccagccacggggccctgat-tcctcagggt-c-ttcaccgagggcctcatgaggcctgcagtgggctgtgtggctggagaggaatcctgaacttagaacacccaaatccttgctactgggaggcgagcctgcct----gccctttgccccagagggatgcag---tttagcttacaaggctgtcctctaaacaggcatcc-------ttg--------------tgtaaatgctttga-acaaagccttgtcactgtctgtgcttggaagacatgcagaa-acatgacac--ccatggagaaccatctccc s panTro5.chr2A 3547641 436 + 111504155 GAGcaacagttgtgaagggcctgagatgttatcctgtttcca---------agctgtggagttagctgccactttcatggatgctggc-aaaaaatgtaagattcctacgttagagaggaaggatatttatta--cacagcaacagcagtacagccagagtggcat---tct-gtcaccagacacggggccctgat-tcctcagggt-c-ttcaccgagggcctcatgatgcctgcagtgggctgtgtggctggagaggaatc-tgaacttagaacacccaaatccttgctactgggaggcgagcctgcct----gccctttgccccagagggatgcag---tttagcttacaaggctgtcctctaaacaggcatcc-------ttg--------------tgtaaatgctttga-acaaagccctgtcactgtctgtgcttggaagacatgcagaa-acatgacac--ccatggagaaccatctccc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3408385 436 + 114371477 GAGcaacagttgtgaagggcctgagatgttatcctgtttcca---------agctgtggagttagctgccactttcatggatgctggc-aaaaaatgtaagattcctacgttagagaggaaggatatttatta--cacagcaacagcagtacagccagagtggcat---tct-gtcaccagacacggggccctgat-tcctcagggt-c-ttcaccgagggcctcatgatgcctgcagtgggctgtgtggctggagaggaatc-tgaacttagaacacccaaatccttgctactgggaggcgagcctgcct----gccctttgccccagagggatgcag---tttagcttacaaggctgtcctctaaacaggcatcc-------ttg--------------tgtaaatgctttga-acaaagccctgtcactgtctgtgcttggaagacatgcagaa-acatgacac--ccatggagaaccatctccc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 286243 437 + 637652 CAGcaacagttgtgaagggcctgagatgttatcctgtttcca---------agctgtggagttagctgccactttcatggatgctggc-aacaaatgtaagattcctacgttagagaggaaggatatttatta--cacagtaacagcagtacagccagagtggcat---tcttcccaccagccacggggccctgat-tcctcagggt-c-ttcaccgagggcctcatgatgcctgcagtgggctgtgtggctggagaggaatcctgaacttagaacacccaaatccttgctactgggaggc-agcccgcct----gccctttgccccagagggatgcag---tttagcttacaaggctgtcctctaaacaagcatcc-------ttg--------------tgtaaatgctttga-acaaagccctgtcactgtctgtgcttggaagacatgcagaa-acatgacac--ccatggagaaccatctccc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3083248 437 + 81552678 CAGcaacagttgtgaagggcctgagatgttatcctacttgca---------agctgtggagttagctgccattttcatggatgctggc-aaaaaatgtgagattcctacgttagaaatgaaggatatttatta--cacagcaacagcagtacagccagagtggcat---tctttccaccagacacggggccctgat-tcctcagggt-ctttcaccgagggcctcatgatgcctgcagtgggc--tgtggctggagaggaatcctgaacttagaacacccaaatccttgctactgggaggtgagtctgcct----gcccttcaccccagagggatgtag---tttagcttacaaggctgtcctctaaacaggcatcc-------ttg--------------tgtaaatgctttga-acaaagccctgtcagtgtctatgcttggaagacatgcagaa-acatgacac--acgtggagaaccatctccc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3346055 442 + 108979918 CAGcaacagttgtgaagggcctgagatgttatcctatgtgca---------agctgtagagttagctgccattttcatggatgctggcgaaaaagtgtaagattcttaggttagagatgaaggacatttatta--cacagcaacagcagcacagccagagtggcat---tctttccgccagacacggggccctgat-tcctcggggt-c-ttcacccagggcctcgtgatgcctgcagtgggctgtgtggctgcagaggaatcctgaacgtagaacacccaaatccttgctcctgggaggtgagcctgcctgcctgcccttcgccgcagagggacgcgg---tttagcttacaaggctgtcctgtaaaca-gcgtcc-------ttg--------------tgtaaatgctttga-acagagccctgtcggtgtctgtgcttggaagacatgcagat-acatgacag--ccatggagaaccacctccc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5056868 442 - 111193037 CAGcaacagttgtgaagggcctgagatgttatcctatgtgca---------agctgtagagttagctgccattttcatggatgctggcgaaaaagtgtaagattcttaggttagagatgaaggacatttatta--cacagcaacagcagcacagccagagtggcat---tctttccgccagacacggggccctgat-tcctcggggt-c-ttcacccagggcctcgtgatgcctgcagtgggctgtgtggctgcagaggaatcctgaacgtagaacacccaaatccttgctcctgggaggtgagcctgcctgcccgcccttcgccgcagagggacgcgg---tttagcttacaaggctgtcctgtaaaca-gcgtcc-------ttg--------------tgtaaatgctttga-acagagccctgtcggtgtctgtgcttggaagacatgcagat-acatgacag--ccatggagaaccacctccc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3449496 442 + 3644372 CAGcaacagttgtgaagggcctgagatgttatcctatgtgca---------agctgtagagttagctgccattttcatggatgctggcgaaaaagtgtaagattcttaggttagagatgaaggacatttatta--cacagcaacagcagcacagccagagtggcat---tctttccgccagacacggggccctgat-tcctcggggt-c-ttcacccagggcctcgcgatgcctgcagtgggctgtgtggctgcagaggaatcctgaacgtagaacacccaaatccttgctcctgggaggtgagcctgcctgcctgcccttcgccgcagagggacgcag---tttagcttacaaggctgtcctgtaaaca-gcgtcc-------ttg--------------tgtaaatgctttga-acagagccctgtcggtgtctgtgcttggaagacatgcagat-acatgacag--ccatggagaaccacctccc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3405854 439 - 10304083 CAGcaacagttgtgaagggcctgagatgttatcctatgtgca---------agctgtagagttggctgccattttcatggatgctggcgaaaaagtgtaagattcttaggttagagacgaaggacatttatta--cacagcaacagcagcacagccagagtggcat---tctttccgccagacacggggccccgat-tcctcggggt-c-ttcacccagggcctcgtgatgcctgcagtgggctgtgtggctgcagaggaatcctgaacgtagaacacccaaatccttgctcctgggaggtgagcctgcct----gcccttcgccgcagagggacgcgg---tttagcttacaaggctgtcctgtaaaca-gcatcc-------ttg--------------tgtaaatgctttga-acaaagccctgtcggtgtctgtgcttggaagacatgcagataacatgacag--ccatggagaaccacctccc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3507096 438 - 107702431 CAGcaacagttgtgaaggccttgagatgttatccgatgtgca---------agctgtagagttggctgccattttcacggatgctggtgaaaaagtgtaagagtcttaggttagagacgaaggacatttatta--cacagcaacagcagcacagccagggttgcat---tctttcggccagacacggggccctgat-tcctcagggt-c-ttcacccagggcctcgtgatgcctgcagtgggctgtgtggctgcagaggaatcctgaacttagaacacccagatccttgctcctgggaggtgagcctgcct----gcccttcgccgcagagggccgcgg---tttagtttacaaggctgtcctgtaaaca-gcgtcc-------ttg--------------tgtaaatgctttga-acaaagccctgtcggtgtctgtgcttggaagacatgcagac-acatgacag--ccatggagaaccacctccc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1037755 438 + 1565135 CAGcaacagttgtgaagggcctgagatgttatcctatgtgca---------ggctgtagagttggctgccattttcatggatgctggcgaaaaagtgtaagattcttaggttagagatgaaggacatttatta--cacagcaacagcagcacagccagaatggcat---tctttccgccagacacggggccctgat-tcctcggggt-c-ttcacccagggcctcgtgatgcctgcagtgggctgtgtggctgcagaggaatcctgaacgtagaacacccaaatccttgctcctgggaggtgagcctgcct----gcccttcgccgcagagggacgcgg---tttagcttacaaggctgtcctgtaaaca-gcgtcc-------ttg--------------tgtaaatgctttga-acaaagccctgtcggtgtctgtgcttggaagacatgcagat-acatgacag--ccatggagaaccacctccc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3401942 439 - 13651311 CAGC-ACAGTtgtgaagggcctgagatactatcctatgtgca---------agctgtagagttagctgccattttcatggatgctggcgaaaaagtgtaagattcttaggttagagacgaaggacatttatta--cacagcaacagcagcacagccagagtggcat---tctttccgccagacgt-gggccctgac-tcctca-ggt-c-ttcaccgagggcctggtgatgcctgcagtgggctgtgtggctgcagaggaatcctgaacttagaacacccaaatccttgctactgggaggtgagcctgcctgcctgcccttcgccgcagagggacgcgg---tttagctcacaaggctgtcctgtaaaca-gcatcc-------ttg--------------tgtaaatgctttga-acaaagccctgttagtgtctgtgcttggaagacatgcagat-acgtgacag--ccatggagaaccacctccc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3490488 434 - 108792865 CAGCAGCAGTtgtgaagggcctgagatattactgaatctgcaatatacagtaattgtggagttagctgccagtttcctgcatgctggc-aaaacatgtaagattctgatgttagagatgaaggatatttct----caaagcaac-acagtatagccagagtggcgt---tcttttcaccggacatggggccctgat-tcctccaggt-c-ttcaccaaggacctgatgatgctggcagtgggctgt---gctggagaggaatcctgaacttagaacg-ccaagcccttgctcctgggaggtgagcctgcct----gcccttcgccccagagggatgctg---tttagcttacaaggctgtcctct-aacaagcatcc-------ttg--------------tgtggatgctttga-acaaaaccctgtcagcgtctgtgcttggaagacatgcagaa-acaccacaga-cccctgagaacca------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3134666 427 - 7082604 CAGcaacagttgtgaagggcctgagatgttattctgtgtgca---------agttgtggagttagctgctgttttcctggatgccggc-aaaacagataagattcctaggtcagagacgaaggagatttct----caaagca---gtggcatggccagagtggcgt---tc---tcaccggacgtgcggccccaat-tcctcagggt-c-ttcaccggggacctgatgatgctggcagagggctgt---gccggagaggagtcctgaacttagaaca-ccaagtccttgctactgggaggtgagcctgcct----gcccttcgccccagacggatgccg---tttagcttagaaggccgccctccaaacaggcatcc-------tcg--------------tgtggatgctctga-acaaaaccctgtcagcgtctgtgcttggaagacatgcagaa-acacgacaga-cccctgagaaccatctccc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 620725 429 + 5243153 TACcaacagttgtgaagggcctgagatgttactccatgtgca---------agttgtggagttagctgccattttcctggatgctggc-aaaacatgtgagattcctaggtcagggacgaaggagatttct----cagagcagcagcagcatggccagagtggtgt---tt---ccaccggacatgcggccctgat-tcctcagggt-c-ctcaccgaggacctgacgatgccggcagtggg-tgt---gctggagagggatcctgaacttagaaca-acaaatccttgctcctgggaggtgagcctgcct----gtccttcgccccagagggacactg---tttagctcacaaggctgtcctctaaacaggcatcc-------ttg--------------tgtggatgcttcaa-acaaaaccctgtcagcatctgtgcttggaagacatgcagaa-acacgacaga-cccctgagaaccatctccc i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3363713 433 + 7587287 CAGcaacagttgcgaagggcctgagatgttactctatttgca---------agtcgtggagttagctgccattttcctggatgctggc-aaaacatgtaagattcctaggttagaggcgaaggagatttct----caaagcagcagcagtacagccagagtcgcgt---tcttttcaccggacattgggccctgat-tcctcagggt-c-ttcaccgaggacctgatgatgccggcagtgggctgt---gctggagaggaatcctgaacttagaacg-ccaagtccttgctactgggaggtgagcctgcct----gcccttcgccccagagggatgccg---tttagcttacaaggctgtcctctaaacaagcatcc-------ttg--------------tgtggatgctttga-acaaaaccctgtcagcgtctatgcttggaagacatgcagaa-acacgacaga-cccctgagaaccatctccc i aotNan1.NW_018509326v1 C 0 I 35 s otoGar3.GL873658 2570322 373 + 5252280 CATCACCagctgcgaggggtctgaggctttgtccttcctgca---------agccttaaagttagctggcattttcatgaatgctgac-aaaagacatgagattcctgggtcagagacaaaggatttC-------------------------------------------------------------CCCAGTT-TCCTCAGGATAC-TTC-----------CATGATACTCATGAtgggttccatcgctagagaatagtgctgaacttgggaaacctaaatccttgattgtggccactaaggacatgt----gcctttcaccccaagggggcacat---tcttacctccaaggctacgctccgtgcaggcatcc-------ttg--------------taaggatggtgtggtacagaaagcagtcaggacctgtgctcacaagacaggcagac-acgagactg--ccatggagaatcctctccc i otoGar3.GL873658 I 1031 C 0 s canFam3.chr17 2063828 399 + 64289059 CATGACCaactgggaaaggtctgaagctctgtcctccgtgcg---------agctctgtgcttcgctgcgggtttcctggatgctggc-agaagtcagggcgctcccagaagagaggcgaggggcacttactgctcacagcagcagcagtatagtcagtgt--cct---ttctgtcaccagacagcgagcccc--t-ctctcagggt-a-acggagggggacc--aagacaccagcagcagcc------gctggagggtaatcctgaaccgaagggacccgcctctgtgcctcgggacggtgagcacccct----gccctttgctccactgggacacat---tccagctt-caaggc-------cacacaggcttccaggaaaacag--------------tgtgga-gctcaga-gca-------gccggtgtccccgctc-----acaCACTGGC-TGTCTGCGG--CCCC--------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 609395 457 + 2232271 tgtcaagaactgtgaag-----gagattttatcttactttga---------agctaacaggtgagctgccagtttcatggatactggc-aaaagacatgcgattcctgggtctgcaactaaagacttttaatactcacagcaatagcagtataaccagatgagcgttaattttttcaccaaacaccaagccccaatctcctcagggtaa-tgtgaagaggcccagatgatacctgcagtgagttgcattgcc--agcgtcatcctaagcttaggacacccacatcttacgtaataggcagtacatatgcct----gccctttcctcccaagggagacatcacctctgtacacaaggctgtttactatactaacatcc-------ttgaaatgctaggccattgtactggtctaga-ataaaagatagactgtgcctctgcttgtaagacctacagaa-atgggagagatccagggagaactctatccc i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I a score=104238.000000 s hg38.chr2_KI270769v1_alt 86125 21 + 120616 cacCAGTCATCTGAGAAGTTA- s panTro5.chr2A 3548077 21 + 111504155 cacCAGTCATTTGAGAAGGTA- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3408821 21 + 114371477 cacCAGTGATTTGAGAAGGTA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 286680 21 + 637652 cacCAGTCATCTGAGAAGTTA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3083685 21 + 81552678 aacCAGTCAGTTGAGAGGTTA- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3346497 21 + 108979918 cacCAGTCATCTGAGAAGTTA- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5057310 21 - 111193037 cacCAGTCATCTGAGAAGTTA- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3449938 21 + 3644372 cacCAGTCATCTGAGAAGTTA- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3406293 21 - 10304083 cacCAGTCATCTGAGAAGTTA- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3507534 21 - 107702431 cacCAGTCATTTGGGAAGTTA- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038193 21 + 1565135 cacCAGTCATCTGAGAAGTTA- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3402381 21 - 13651311 cacCCGTCATTGGAGAAGTTA- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3490922 14 - 108792865 ------tcATCTGAAAATGT-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135093 20 - 7082604 agcCAGTCATCGGAGAATGT-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621154 20 + 5243153 agcCAGACTTCTGAGAATGT-- i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2570695 20 + 5252280 GGTCGGTC-TTTGAGGGTGCA- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2064227 6 + 64289059 CACCAG---------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 609852 22 + 2232271 aacaAGTTGTTTTCAGATTTCA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I e aotNan1.NW_018509326v1 3364146 35 + 7587287 I a score=933192.000000 s hg38.chr2_KI270769v1_alt 86146 133 + 120616 GCAGG--CTTGTT-TTAATGCTGGACAGATGCTTGGCGTGGACAGTCTAAGA--GTTAACTAG-----GCTGCTCAGT-ATGATAGTGATGGGTGCCCCAGC--CCTCCTC----ATGGAGGTGAGCCG-----CGCGCATTCAGCTTGTTTCTC- s panTro5.chr2A 3548098 134 + 111504155 GCAGG--CTTGTT-TTAATGCTGGACAGATGCTTGGCGTGGACAGTCTAAGA--GTTAACTAG-----GCTGCTCAGTGATGATAGTGATGGGTGCCCCAGC--CCTCCTC----ATGGAGGTGAGCCG-----CGCACATTCAGCTTGTTTCTC- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3408842 134 + 114371477 GCAGG--CTTGTT-TTAATGCTGGACAGATGCTTGGCGTGGACAGTCTAAGA--GTTAACTAG-----GCTGCTCAGTGATGATAGTGATGGGTGCCCCAGC--CCTCCTC----ATGGAGGTGAGCCG-----CGCACATTCAGCTTGTTTCTC- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 286701 134 + 637652 GCAGG--CTTGTT-TTAATGCTGGACAGATGCTTGGCGTGGACAGTCTAAGA--GTTAACTAG-----GCTGCTCAGTGATGATAGTGATGGGTGCCCCAGC--CCTCCTC----ATGGAGGTGAGCCG-----CGCACATTCAGCTTGTTTCTC- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3083706 131 + 81552678 GCAGG--CTTGTT-TCAATGCCGGACAGATGCTTGGCGTGGAAAGCGTAAGA--GTTAACTCG-----GCTGCTCAGT---GATAGTGATGGGTGCCCCAGC--CCTCCTC----ATGGAGGTGAGCCG-----CGCACATTCAGCTTGTTTCTC- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3346518 132 + 108979918 GCAGG--CTTG-T-TTCGTGCTGGACAGATGC-TGGCGTGGGAAGTCTGAGA--GTTAACTAG-----GCTGCTCAGCGATGATAGCGCTGGGTCCTCCAGC--CCTCCTC----ACGGAGCTGAGCCG-----CGCACTTTCAGCTTGTTTCTC- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5057331 132 - 111193037 GCAGG--CTTG-T-TTCGTGCTGGACAGATGC-TGGCGTGGGAAGTCTGAGA--GTTAACTAG-----GCTGCTCAGCGATGATAGCGCTGGGTCCTCCAGC--CCTCCTC----ACGGAGGTGAGCCG-----CGCACTTTCAGCTTGTTTCTC- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3449959 132 + 3644372 GCAGG--CTTG-T-TTCGTGCTGGACAGATGC-TGGCGTGGGAAGTCTGCGA--GTTAACTAG-----GCTGCTCAGCGATGATAGCGCTGGGTCCTCCAGC--CCTCCTC----ACGGAGGTGAGCCG-----CGCACTTTCAGCTTGTTTCTC- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3406314 132 - 10304083 GCAGG--CTTG-T-TTCGTGCTGGACAGATGC-TGGCGTGGGAAGTCTGAGA--GTTAACTAG-----GCTTCTCAGCGATGATAGCGCTGGGTCCTCCAGC--CCTCCTC----ACGGAGGTGAGCCG-----CGCACATTCAGCTTGTTTCTC- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3507555 133 - 107702431 GCAGG--CTTGTT-TTCGTGCTGGACGGATGC-TGGCGTGGGAAGTCTAAGA--GTTAACTAG-----GCTGCTCAGCGATGATAGCGCTGGGTCCTCCAGC--CCTCCTC----ACGGAGGTGCGCCG-----CGCACATTCAGCTTGTTTCTC- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038214 132 + 1565135 GCAGG--CTTG-T-TTCGTGCTGGACAGATGC-TGGCGTGGGAAGTCTGAGA--GTTAACTAG-----GCTGCTCAGCGATGATGGCGCTGGGTCCTCCAGC--CCTCCTC----ATGGAGGTGAGCCG-----CGCACATTCAGCTTGTTTCTC- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3402402 134 - 13651311 GCAGG--CTTG-TGTTCGTGCCGGACAGATGCTTGGCGTGGGAAGTCTAAGA--GTTAACTAG-----GCTGCTCAGCGATGCTAGCGCTGGGTCCTCCAGC--CCTCCTC----ACGGAGGTGAGCCG-----CGCACATTCAGCTCGTTTCTC- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3490936 123 - 108792865 GCAGG--CCGATT-GTAATCCTGGACAGACGCTCTCC--AGGAAGTCT--GA--GTCAACTAG-----ACTGCCCAGCGAT--------CCATCCCCTCAGCCTCCTCCTC----ACGGAGGTGAGCGG------ACACCTTCAGCTTGCTTCTC- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135113 131 - 7082604 GCGGG--CTTATT-TTAATGCTGGACAGATGCTTTCC--AGGAAGTCTAAGA--GTTTACTAG-----ACTGCTGAGCGAT--------TGATCCCCTCAGCCTCCTCCTC----ACGGAGCTGAGCTGAGCAGCACACCTTGAGCTTGTTTCTC- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621174 126 + 5243153 GCAGG--CTTATT-TTAATGCTGGACAGATGCTTTCC--AGGAAGTCTAAGA--GTTAACTAG-----ACTGCTGAGCGAT--------CGATCCCCTCAGCCTCCTCCTC----ACAGAGGTGAGCAG-----CACACCTTCAGCTTGTTTCTC- i cebCap1.NW_016107454v1 C 0 I 88 s aotNan1.NW_018509326v1 3364181 126 + 7587287 GCAGG--CTTATT-TTAATGCTGGACAGATGCTTTCC--AGGAAGTCTAAGA--GTTAACCAG-----ACTGCTGAGCGAT--------CGATCCCCTCAGCCTCCTCCTC----ACGGAAGTGAGCAG-----CACACCTTCAGCTTGTTTCTC- i aotNan1.NW_018509326v1 I 35 I 24 s otoGar3.GL873658 2570715 111 + 5252280 GCCAA--CTTGTG-TTAGAGACCGACAGGTACCTGCCCCAGAAAGCATGAGA--GTAAGTTGGCTAGCACTGCTCAGT---------CCCCGGCCCCTGGGC--CCTCCT--------GCACTGAGCGG-----CACACA---------------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2064233 47 + 64289059 -------------------------------------------GGCCTAAGATCAGGATCTGG-----ATTAC-----------------AGACCCCCCGTC--CCTCTCT----CTG-------------------------------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 609874 131 + 2232271 GTGGGATCTGTTT-TAAGTGACTGGCAGATGC-TGACAATGAAAGGGTAA----TTAAATTAG----TACTATTCAGCTAT--------TGCTCCCCTCAGT--GCTCCTCTACTTAGAATATAAAGAG-----CACAAATTCAAGTTGTTTTATT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I a score=108552.000000 s hg38.chr2_KI270769v1_alt 86279 26 + 120616 ATCGAGAC----------AGAGGAC-AGCATTCTGTT s panTro5.chr2A 3548232 26 + 111504155 ATCGAGAC----------AGAGGAC-AGCATTCTGTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3408976 26 + 114371477 ATCGAGAC----------AGAGGAC-AGCATGCTGTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 286835 26 + 637652 ATCGAGAC----------AGAGGAC-AGCGTTCTGTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3083837 26 + 81552678 ATGGGGAC----------AGAGGAC-AGCATTCTGTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3346650 24 + 108979918 CTCGGGAC------------AGGAC-AGCATTCTGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5057463 24 - 111193037 CTCGGGAC------------AGGAC-AGCATTCTGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450091 24 + 3644372 CTCGGGAC------------AGGAC-AGCATTCTGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3406446 24 - 10304083 CTCGGGAC------------AGGAC-AGCATTCTGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3507688 24 - 107702431 CTCGGGAC------------AGGAC-AGCATTCTGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038346 24 + 1565135 CTCGGGAC------------AGGAC-AGCATTCTGTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3402536 24 - 13651311 ATCGGGAC------------AGGAC-AGCATTCTGTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491059 23 - 108792865 -TAGGGAC----------AAAGGAC--ACGTTCTAT- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135244 24 - 7082604 -TGGGGAC----------AGAGGAC-AACGTTCTGG- i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2570826 21 + 5252280 ----GGAC------------AGTGCAAGGATTCAGTG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2064280 7 + 64289059 ------------------------------TTCTGTA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610005 36 + 2232271 ATCATGAAATTACATCAAAAAAGAC-AGTATTTTTTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I e cebCap1.NW_016107454v1 621300 88 + 5243153 I e aotNan1.NW_018509326v1 3364307 24 + 7587287 I a score=371906.000000 s hg38.chr2_KI270769v1_alt 86305 62 + 120616 AAGTTTCTGCTGCTGCCATGATA--ACAGAGCTCGCTGTCAC--ATTCTGGCTCCCGCAGGCTGTG s panTro5.chr2A 3548258 62 + 111504155 AAGTTTCTGCTGCTGCCATGATA--ACAGAGCTCGCTGTCAC--ATTCTGGCTCCCGCAGGCTGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409002 62 + 114371477 AAGTTTCTGCTGCTGCCATGATA--ACAGAGCTCGCTGTCAC--ATTCTGGCTCCCACAGGCTGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 286861 61 + 637652 AAGTTT-TGCTGCTGCCGTGATT--ACAGAGCTCGCTGTCAC--GTTCTGGCTCCCGCAGGCTGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3083863 62 + 81552678 ACGTTTCTGCTGCTGCCATGATA--ACAGAGCTTGCTGTCGC--CATCTGGCTCCCGCAGGCTGTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3346674 62 + 108979918 AAGCTTCTGCTGCCGCCACGA----GCAGAGCTCGCTGTGGCAGAGCCCAACTCCTGCAGGCTGCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5057487 62 - 111193037 AAGCTTCTGCTGCCGCCACGA----GCAGAGCTCGCTGTCGCAGAGCCCGACTCCTGCAGGCTGCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450115 62 + 3644372 AAGCTCCTGCTGCTGCCACGA----GCAGAGCTCGCTGTCGCAGAGCCTGACTCCTGCAGGCTGCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3406470 62 - 10304083 AAGTTTCTGCTGCTGCCATGA----GCAGAGCTCGCTGTCGCAGAGCCTGACTCCTGCAGGCTGCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3507712 62 - 107702431 AAGTTTCTGCTGCTGCCATGA----GCAGAGCTCGCTGTCGCAGAGCCCGACTCCTGCAGGCTGCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038370 62 + 1565135 AAGTTTCTGCTGCTGCCATGA----GCAGAGCTCGCTGTCGCAGAGCCTGACTCCTACAGGCTGCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3402560 62 - 13651311 GAGTTTCTGCTGCTGCCATGA----GCAGAGCTCGCTGTCGCAGAGCCTGACTCCTGCAGGCTGCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491082 63 - 108792865 AAGCTTCTGCCGCGGCTGTGAT---GTGGAGCTCGCTGCTGGAGAGTCCGACGCCCACAGGCGGCG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135268 63 - 7082604 AAGCTTCTGCCGCAGCTGTGGG---GCAGAGCTCGCTGCTGGAGAGTCCGACGCCCGCGGGCGGTG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3364331 63 + 7587287 AAGCTTCTGCTGCGGCTGTGAT---GCAGAGCTCGCCGCTGGAGAGTCCAGCGCCCGCAGGCGGCG i aotNan1.NW_018509326v1 I 24 C 0 s otoGar3.GL873658 2570847 43 + 5252280 ----------------------AT-GCAGGCCTTGCTGCTGTGGGGTGCTGTCCTCCTGTGCTGTC i otoGar3.GL873658 C 0 I 9 s canFam3.chr17 2064287 42 + 64289059 -----------------------ACGTAGAGCTCACTAGCCCTGGGTCCACTTCCCCGAGCTAGC- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610041 60 + 2232271 GATTTTGTGTTATTGT--TGA----ATTGAGTATGCTATACCAGAGTACTGTTTCTTTAGACTATC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I e cebCap1.NW_016107454v1 621300 88 + 5243153 I a score=673673.000000 s hg38.chr2_KI270769v1_alt 86367 87 + 120616 -CCCCGGACACAAAGCAACTCTGTCTTTAC---CCTCGTGAGCGCGGCTTGGGC----CATAATAGGACTTT--TCTTTCATTTGTATCTATTTCTT s panTro5.chr2A 3548320 87 + 111504155 -CCCCGGACACAGAGCAACTCTGTCTTTAC---CCTCGTGAGCGCGGCTTGGGC----CATAATAGGACTTT--TCTTTCATTTGTATCTATTTCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409064 87 + 114371477 -CCCCGGACACAGAGCAACTCTGTCTTTAC---CCTCGTGAGCGCGGCTTGGGC----CATAATAGGACTTT--TCTTTCATTTGTATCTATTTCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 286922 87 + 637652 -CCCCAGACACAAAGCAACTCTGTCTTTAC---CCTCGTGAGTGCGGCTTGGGC----CATAATAGGACTTT--TCTTTCATTTGTATCTATTTCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3083925 85 + 81552678 -CCCCGGACACAAAGCAA--CTGTCTTTAT---CCTCGTGAGCGTGGCTTGGGC----CATAATAGGACTTC--TCTTTAATTTGTATCTATTTTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3346736 82 + 108979918 -TCCCGGACACAAGGCAACTCTGTGTTTTC---CTTCGTGAGCACGGCTTGGGC----CGTAATAGGA-------CTTTAATTTTTATCTATTTCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5057549 87 - 111193037 -CCCCGGACACAAGGCAACTCTGTGTTTTC---CTTCGTGAGCATGGCTTGGGC----CGTAATAGGACTTT--TCTTTAATTTTTATCTATTTCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450177 87 + 3644372 -CCCCGGACACAAGGCAACTCTGTGTTTTC---CTTCGTGAGCATGGCTTGGGC----CGTAATAGGACTTT--TCTTTAATTTTTATCTATTTCTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3406532 82 - 10304083 -CCCCGGACACAAGGCAACTCTGTCTCTTC---CTTCGTGAGCA-----TGGGC----CATAATAGGACTTT--TCTTTAATTTTTATCTATTTCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3507774 87 - 107702431 -CCCCGGACACAAGGCAACTCTGTCTTTTC---CCTCGTGAGCGTGGCTTGGGC----CATAATAGGACTTT--TCTTTAATTTTTATCTATTTCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038432 87 + 1565135 -CCCCGGACACAAGGCAACTCTGTGTTTTC---CTTCGTGAGCATGGCTTGGGC----CATAATAGGACTTT--TCTTTAATTTTTATCTATTTCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3402622 86 - 13651311 -CCCCGGACACAGGGCAACTCTGCCTTTTC---CCTCGTGAGCGGGGCTTGGGC----CATAATAGGACTTT---CTTTCATTTTTATCTACTTCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491145 82 - 108792865 -CCCGGGACACGAAGCAGCTTTGTCCTCAC---CCTGGTGAGCGCAGTCTGGGC----TGTGACAGGACTG-----TTCCATTTTCACCTGTGCT-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135331 85 - 7082604 -TCCCGGACACAAAGCAGCTCTGTCTTCAC---CCTCGTGAGCACAGTCTGGGC----CATAACAGGACTGT--CCTTCCATTTTTACCTATTCC-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621388 83 + 5243153 -CCCCGGACACAAAGCAGC--TGTCTTCAC---CCTCATGAGCGCTGTCCGGGC----CATAACAGGACTGT--TCTTCCATTTTTACCTATTCC-- i cebCap1.NW_016107454v1 I 88 C 0 s aotNan1.NW_018509326v1 3364394 82 + 7587287 -CCCCGGACATGAAGCAGCTTTGTCTTCAC---CCTCGTGAGCGCAGTCTGGGC----CATAACAGGACTG-----TTCCATTTTTACCTATTCT-- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2570899 89 + 5252280 -GCTCTGAAACACAGACACCTTTATTTTTA---CTTCACCCTTGACATTTTTGA----AATAACAGGATTTTTTTCTTTATTTTTTATGTTTTTCTC i otoGar3.GL873658 I 9 C 0 s canFam3.chr17 2064329 86 + 64289059 -CCTGGAACACTAAG-GACATTGTTTCTATATGACCCTTTAGTGAGGTTTGTGC----TCTAACAGGATTTT-----TTATTTTCCATATATTCTCA i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 610101 85 + 2232271 CCCTGCAACACAAAGGACATTTGTTTTTCA---TCTTATCTGTAT-GTATAAGCTTTTCCTTATAACatttt--tatt---ttttcatatattt--- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2670155 1832 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I a score=101575.000000 s hg38.chr2_KI270769v1_alt 86454 8 + 120616 ATTGTAAG s panTro5.chr2A 3548407 8 + 111504155 ATTGTAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409151 8 + 114371477 ATTGTAAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287009 8 + 637652 GTTGTAAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084010 8 + 81552678 ATTGTAAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3346818 8 + 108979918 ATTGTAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5057636 8 - 111193037 CTTGTAAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450264 8 + 3644372 ATTGTAAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3406614 8 - 10304083 ATTGTAAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3507861 8 - 107702431 ATTGTAAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038519 8 + 1565135 ATTGTAAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3402708 8 - 13651311 ATTGTAAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491227 6 - 108792865 --TGCAAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135416 6 - 7082604 --TGTAAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621471 6 + 5243153 --TGTAAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3364476 6 + 7587287 --TGTAAG i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2671987 8 - 159902609 ATTGTAAG i micMur3.chr8 I 1832 C 0 s otoGar3.GL873658 2570988 8 + 5252280 ATTATAAG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2064416 8 + 64289059 AATATTAG i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 610186 8 + 2232271 attataaa i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 981949 1860 + 1238772 I a score=339865.000000 s hg38.chr2_KI270769v1_alt 86462 23 + 120616 CCTTAGATCATTTATTCCCTTCC s panTro5.chr2A 3548415 23 + 111504155 CCTTAGATCATTTATTCCCTTCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409159 23 + 114371477 CCTTAGATCATTTATTCCCTTCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287017 23 + 637652 CCTTAGATCATTTATTCCCTTCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084018 23 + 81552678 CCTTAGATCATTTATTCCCTTCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3346826 23 + 108979918 CCTCAGATCATTTATTCCCTTCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5057644 23 - 111193037 CCTCAGATCATTTATTCCCTTCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450272 23 + 3644372 CCTCAGATCATTTATTCCCTGCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3406622 23 - 10304083 CCTCAGATCATTTATTCCCTTCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3507869 23 - 107702431 CCTCAGATCATGTATTCCCTTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038527 23 + 1565135 CCTCAGATCATTTATTCCCTTCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3402716 23 - 13651311 CCTCAGATCATTTATTCCCTTCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491233 23 - 108792865 GCTTAGATCATATATTCCCTTCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135422 23 - 7082604 CCTTAGATCCTATATTCCCTTCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621477 23 + 5243153 CCCTAGATCCTATATTCCCTTCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3364482 23 + 7587287 CCTTAGATCATATATTCCCTTCC i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2671995 23 - 159902609 CCTTAGATCATTTATTTCCTTCC i micMur3.chr8 C 0 I 191 s proCoq1.NW_012151163v1 983809 23 + 1238772 CCTTAGATCATTTATTTCCTTCC i proCoq1.NW_012151163v1 I 1860 C 0 s otoGar3.GL873658 2570996 23 + 5252280 CCTTAGATCATTTATTTCCTTTC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2064424 22 + 64289059 -GTTAGGTCTCTCATTCTCTTCC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610194 19 + 2232271 CCTTAGAACACTGTTGTCC---- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91434365 1607 - 120129022 I a score=33121.000000 s hg38.chr2_KI270769v1_alt 86485 3 + 120616 TTA s panTro5.chr2A 3548438 3 + 111504155 TTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409182 3 + 114371477 TTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287040 3 + 637652 TTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084041 3 + 81552678 TTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3346849 3 + 108979918 TTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5057667 3 - 111193037 TTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450295 3 + 3644372 TTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3406645 3 - 10304083 TTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3507892 3 - 107702431 TGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038550 3 + 1565135 TTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3402739 3 - 13651311 TGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491256 3 - 108792865 TTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135445 3 - 7082604 CTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621500 3 + 5243153 TTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3364505 3 + 7587287 TTG i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 983832 3 + 1238772 TTA i proCoq1.NW_012151163v1 C 0 I 188 s otoGar3.GL873658 2571019 3 + 5252280 TTA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2064446 3 + 64289059 TTA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610213 3 + 2232271 TTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672018 191 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I a score=1751718.000000 s hg38.chr2_KI270769v1_alt 86488 204 + 120616 CACTTCTAGAGGTGAAAGAAAACCCAAG----TCTGCCTTT-GTAAAACCAAGCTGTG--GCC-----------------------------------TCAGGAGT--CAGGGCTGGGGCACTCAGCCTTCCACCCCCCAGGCCTCCTCTGCCACAGGCCTGCTGCATCCGGCTGCATTTCAGTCGGGCAGCCGGTGGGTTTCCTGACATGCGTGATAAGAGTGGGTTTGA------GTTTGGTTTGGCTTGTT s panTro5.chr2A 3548441 210 + 111504155 CACTTCTGGAGGTGAAAGAAAACCCGAG----TCTGCCTTT-GTAGAACCAAGCTGTG--GCC-----------------------------------TCAGGAGT--CAGGGCTGGGGCACTCAGCCTTCCACCCCCCAGGCCTCCTCCGCCACAGGCCTGCTGCATCTGGCTGCATTTCAGTAGGGCAGCCGGTGGGTTTCCTGACATGTGTGATAAGAGTGggtttgagtttgggtttggtttggcttgtt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409185 210 + 114371477 CACTTCTGGAGGTGAAAGAAAACCCGAG----TCTGCCTTT-GTAGAACCAAGCTGTG--GCC-----------------------------------TCAGGAGT--CAGGGCTGGGGCACTCAGCCTTCCACCCCCCAGGCCTCCTCCGCCACAGGCCTGCTGCATCTGGCTGCATTTCAGTAGGGCAGCCGGTGGGTTTCCTGACATGCGTGATAAGAGTGggtttgagtttgggtttggtttggcttgtt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287043 209 + 637652 CGCTTCTGGAGGTGAAAGAAAACCCGAG----TCTGCCTTT-GTAAAACCAAGCTGTG--GCC-----------------------------------TCAGGAGT--CAGGGCTGGGGCACTCAGCCTTCCACCCCCCAGGCCTCCTCCGCCACAGGCCTGCTGCATCCGGCTCCATTTCAGTCGGGCAGCCGGTGGGTTTCCTGACATGTGTGATAAGAGtggatttgagtttggg-ttggtttggcttgtt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084044 210 + 81552678 CGCTTCTGGAGGTGAAAGAAAACCCAAG----TCTGCCTTT-GTAAAACCAAGCTGTG--GCC-----------------------------------TCAGGATT--CAGGGCTGGGGCACTCAGCCTTCCACCCCCCAGGCATCCTCAGCCACAGGCCCGCTGCATCCGGCTGCATTTGAATCGGGCAGCCGGTGGGTTTCCTGACACGGGTGGTAAGAGTGggtttgagtttgggtttggtttggcttgtt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3346852 205 + 108979918 TGCCTCTGGAGGTGAAAGAAAACCCGCG----TCTGCCTTT-CTAAAGCCAGGCTGTG--GCC-----------------------------------TCAGGAGT--CAGGGCTGGGG--CTCAGCCTTCCA-CCCCCGGGCCGCCTCGACCGCCAGGCTGCTGCGTCCGGCTGCGTTTGATTCGGGCAGGCGGCGGGTTTCCTGAC--GTGTGACAAGAGTAggtttgagtttgggtttggtttggcttgtt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5057670 207 - 111193037 TGCTTCTGGAGGTGAAAGAAAACCCGCG----TCTGCCTTT-CTAAAGCCAGGCTGTG--GCC-----------------------------------TCAGGAGT--CAGGGCTGGGG--CTCAGCCTTCCA-CCCCCGGGCCGCCTCGACCGCCAGGCTGCTGCGTCCGGCTGCATTTGATTCGGGCAGGCGGCGGGTTTCCTGACATGTGTGACAAGAGTAGGTTTGAGTTTGGGTTTGGTTTGGCTTCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450298 207 + 3644372 TGCTTCTGGAGGTGAAAGAAAACCCGCG----TCTGCCTTT-GTAAAGCCAGGCTGTG--GCC-----------------------------------TCAGGAGT--CAGGGCTGGGG--CTCAGCCTTCCA-CCCCCGGGCCGCCTCGACCGCCAGGCTGCTGCGTCCGGCTGCGTTTGATTCGGGCAGGCGGCGGGTTTCCTGACATGTGTGACAAGAGTAggtttgagtttgggtttggtttggcttgtt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3406648 208 - 10304083 TGCTTCTGGAGGTGAAAGAAAACCCGCG----TCTGCCTTT-GTAAAGCCAGGCTGTG--GCC-----------------------------------TCAGGAGT--CAGGGCTGGGG--CTCAGCCTTCCACCCCCCGGGCCTCCTCGGCCGCCAGCCTGCTGCGTCCGGCTGCATTTGATTCGGGCGGGCGGCGGGTTTCCTGACATGTGTGACAAGAGTAggtttgagtttgggtttggtttggcttgtt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3507895 207 - 107702431 TGCTTCTGGAGGTGAAGGAAAACCCGCG----TCTGCCTTT-GTAAAGCCAGGCTGTG--GCC-----------------------------------TCAGGAGT--CAGGGCTGGGG--CTCAGCCTTCCACCCCCCGGGCCTCCTCAACCGCCAGCCTGCTGCGT-CGGCTGCATTTGATTCGGGCAGGCGGCGGGTTTCCTGACATGTGCGACAAGAGTAggtttgagtttgggtttcgtttggcttgtt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038553 208 + 1565135 TGCTTCTGGAGGTGAAAGAAAACCTGCG----TCTGCCTTT-GTAAAACCAGGCTGTG--GCC-----------------------------------TCAGGAGT--CAGGGCTGGGG--CTCAGCCTTCCACCCCCCGGGCCTCCTCGACTGCCAGCCTGCTGCGTCCGGCTGCATTTGATTCGGGCGGGCGGCGGGTTTCCTGACATGTGTGACAAGAGTAggtttgagtttgggtttggtttggcttgtt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3402742 208 - 13651311 TGCTTCTGGAGGTGAAAGAAAACCCGTG----TCTGCCTTT-GTAAAACCAGGCTGTG--GCC-----------------------------------TCAGGGGT--CAGGGCTGGGG--CTCAGCCTTCCACTCCCCGGGCCGCCTCGACCGCCAGCCTGGTGTGTCTGGCTGCATTTGATTCGGGCAGGCGGCGGGTTTCCTGACATGTGCGGTAAGAGTAggtttgagtttgggtttggtttggcttgtt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491259 205 - 108792865 TGCTTCTGGAGGTGAAAAAAGGCCTGAG----TCTGCCTTT-GTAAAAGCAAGCTGTG--GGG-----------------------------------TCGGGAGC--CAGGGCCGGGC-ACTCAGCTTTCCACTCCCCAGGACCCCTTGGCCGCCAGCCTCGCCTGTCCAGCTGCATGTGCTTCAGGTGGCCG--CGGGTTCCTGGCACGT--GGTAAGAGTGGGTTTGAGTTTGGGTTTGGTCTGGCTTGTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135448 177 - 7082604 TGCTTCTGGAGGTGGAAGAAAACCTGAG----TCTGCCTTT-GTAGAACCAAGCTGTG--GGG-----------------------------------TCAGGAGT--CGGGG------------------------------CCCCTGGGCCG-CAGCCCTGCTGGTCCGGCTGCGTTTGCTTCAGGCAGCCG--CGGGCTCCTAACATGTGCGCTAAGAGTGGGTTTGAGTTTGGGTTTGGTCCGGCCTGTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621503 207 + 5243153 TGCTTCTGGAGGTGAAAGAAAGCCTGAG----TCTGCCTTT-GTAAAACCAAGCTGTG--GGG-----------------------------------TCAGGAGT--CAGGGCAGGGC-ACTCAGCTCTCCGCTCCCCAGGGCCCCTGGGCCGCCAGCCCTGCTCATCCCGCTGCATTTGCTTCAGGCAGCCG--TGGGTTCCTGACACATGCGGTAAGGGTGGGTTTGCGTTTGGGTTTGATCTGGCTTGTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3364508 207 + 7587287 TGCTTCTGGAGGTGAAAGAAAACCTGAG----TCTGCCTTT-GTAAAACCAAGGTGTA--GCG-----------------------------------TCAGGAGT--CAGGGCCGGGC-ACTCAGCTTTCCGCTCCCCAGGGCCCCTCGGCCGCCAGCCCTGTGAATCCGGCTGCATTTGCTTCAGGCAGCCG--TGGGTTCCTGACACATGCAGTAAGAGtgggtttgactttgggtttggtctggctttTT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2571022 174 + 5252280 TGCTTCTGAAGGCAAAAGAAAGCCTGAA----TCTGCCTTT-TAGAAGCCATGCTGGG--CTC-----------------------------------TCCAGCAT--AGATGGCGGGG------------CCTCTCCCAG----CCCCCACCACCAGCCC------TGTGACTCCGTCTCATGCAGGGAACTGATGGGTTTTCTTATACGTATGGTGAGAGTGGGTTTG--------------TTGTTCTGTT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2064449 179 + 64289059 CACTT-TGACGGCAAAAGGAGATCTGAGTCTTTCTGCTTCC-CAGAGCCCAGGCTGTGGTGCC-----------------------------------TTAGCAGTGGCGGTGCAGGAG--------ATGCCAGCCGTCAGGAGTC----AGGGCCGGCCCTCTCCGCGCCA------------AGGACAGCTAAGGGGCTCCCTCAGGTGTTTCACCAGTGGGAGT---------GGCTTGGTTTTGT----- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610216 203 + 2232271 TGCTTTTGAAGGCAAAAGGAAGCATGAA----GCTCCCTTGAATAAAACCAAGCTGTG--GTTCTCCAGTGATAGCCATGTAGAGAAATATCAAGCAGTCAGGTGT--CAGGGCTGGGA------GATTCACTCCCCACATTCTCCCTCTGTGCCAACCTTAGTGATCTAGGCTTTATTTTATTCAGGGAACTGATAGGTTT------------GATAGTAGGATTTTT------------------------- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672018 191 - 159902609 I e mm10.chr12 91434365 1607 - 120129022 I e proCoq1.NW_012151163v1 983835 188 + 1238772 I a score=28926.000000 s hg38.chr2_KI270769v1_alt 86692 2 + 120616 TT s panTro5.chr2A 3548651 2 + 111504155 tt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409395 2 + 114371477 tt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287252 2 + 637652 tt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084254 2 + 81552678 tt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3347057 2 + 108979918 tt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5057877 2 - 111193037 TT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450505 2 + 3644372 tt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3406856 2 - 10304083 tt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3508102 2 - 107702431 tt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038761 2 + 1565135 tt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3402950 2 - 13651311 tC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491464 2 - 108792865 TT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135625 2 - 7082604 TT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621710 2 + 5243153 TT i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2571196 2 + 5252280 TT i otoGar3.GL873658 C 0 I 1 s mm10.chr12 91435972 2 - 120129022 TT i mm10.chr12 I 1607 C 0 s canFam3.chr17 2064628 2 + 64289059 TT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610419 2 + 2232271 TT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672018 191 - 159902609 I e proCoq1.NW_012151163v1 983835 188 + 1238772 I e aotNan1.NW_018509326v1 3364715 0 + 7587287 C a score=1339485.000000 s hg38.chr2_KI270769v1_alt 86694 90 + 120616 TTAC----AGTTGAATTCTATATTATTTGGTCAAAATATTACTTTGCAATTTGCAAATGTGGTGGCACCTACCATT-TTACTAGCCACAAGTAAC s panTro5.chr2A 3548653 90 + 111504155 TTAC----AGTAGAATTCTATATTATTTGGTCAAAATATTACTTTGCAATTTGCAAATGTGGTGGCACCTACCATT-TTACTAGCCACAAGTAAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409397 90 + 114371477 TTAC----AGTAGAATTCTATATTATTTGGTCAAAATATTACTTTGCAATTTGCAAATGTGGTGGCACCTACCATT-TTACTAGCCACAAGTAAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287254 90 + 637652 TTAC----AGTAGAATTCTATATTATTTGGTCAAAATATTGCTTTGCAATTTGCAAATGTGGTGGCACCTACCATT-TTACTAGCCACAAGTAAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084256 90 + 81552678 TTAC----AGTAGAATTCTATATTATTTGGTCAAAATACTACTTTGCAATTTGCAAATGTGGTGGCACCTACCATT-TTACTAGCCACAAGTAAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3347059 89 + 108979918 TTAC----AGCAGAATTCTATATTA-TTGGTCAAAATATTACTTTGAAATTTGCAAATGTGGTGGCACCTACCATT-TTACTAGCCACAAGTAGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5057879 89 - 111193037 TTAC----AGCAGAATTCTATATTA-TTGGTCAAAATATTACTTTGAAATTTGCAAATGTGGTGGCACCTACCATT-TTACTAGCCACAAGTAGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450507 89 + 3644372 TTAC----AGCAGAATTCTATATCA-TTGGTCAAAATATTACTTTGAAATTTGCAAATGTGGTGGCACCTACCATT-TTACTAGCCACAAGTAGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3406858 89 - 10304083 TTAC----AGCAGAATTCTATATTA-TTGGTCAAAATATTACTTTGAAATTTGCACATGCGGTGGCACCTACCATT-TTACTAGCCACAAGTAGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3508104 89 - 107702431 TTAC----AGCAGAATTCTATATTA-TTGGTCAAAATATTACTTTGACATTTGCAAATGTGGTGGCACCTGCCATT-TTACTAGCCACAAGTAAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038763 89 + 1565135 TTAC----AGCAGAATTCTATATTA-TTGGTCAAAATATTACTTTGAAATTTGCAAATGTGGTGGCACCTACCATT-TTACTAGCCACAAGTAGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3402952 89 - 13651311 TTAC----AGTAGATTTCTATATTA-TTGGTCACAATATTACTTTGAAATTTGCAAATGTGGTGGCACCTACTATT-TTACTGGCCACAAGTAAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491466 86 - 108792865 T--------ACAGAATTCTGTATTATTTGGTCAAAATGTTACTTTGAAATTTGCAAATGTGGTGGCACCTATCATT-TTTCTAGCCACAGAGAAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135627 90 - 7082604 TTAC----AGTAGAATTCTGTATTATTTGGTCAAAATGTTACTTTGAAATTTGCAAATGTGATGGCACCTACCATT-TTTCTGGCCACAGATAAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621712 90 + 5243153 TTAC----AGTAGAATTCTGTATTATTTGATCAAAATGTTACTTTGAAATTTGCAAATGTGATGGCACCTACCATT-TTTCTAGCCACAGATAAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3364715 85 + 7587287 ---------ACAGAATTCTGTATTATTTGGTCAAAATGTTACTTTGACATTTGCAAACGTGATGGCACCTACCATT-TTTCTAGCCACAGGTAAC i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2672209 90 - 159902609 TTAC----AGTAGAATGCTGTATCACTTGGTCAAAATATCACTTTGAAATTTGCAAATCTGGTGACAGCTACCAAT-TTACTAGGCACAAATAAC i micMur3.chr8 I 191 I 82 s proCoq1.NW_012151163v1 984023 90 + 1238772 TTAC----AGTAGAATTCTGTATTATTTAGTCAAAATATTACTTTGAAATCTGCAAATTTGATGACGACTACCATT-TTACTAGGCACAAATAAC i proCoq1.NW_012151163v1 I 188 I 69 s otoGar3.GL873658 2571199 91 + 5252280 TTGC----AGCAGAATCCTGAAATATTTGGTCAGAATATTACTTTGAAATTTGCAAATGTGATGACATCTACCATTAAGAGTAGCCATAAATAAC i otoGar3.GL873658 I 1 C 0 s mm10.chr12 91435974 89 - 120129022 TTAT----AGTAGGATTCTATATTATATGGTCAAAATATTACTTTAAAATTGGCAAGC-TGATGGTATCTACTCTG-TCCTCAGGCAGAAATAAT i mm10.chr12 C 0 I 1 s canFam3.chr17 2064630 88 + 64289059 TGACAAAAAGTAGAGTTCTGTATTG---GATCAGAGTATGACTTTGAAATTTGTGAATGTGATGGTTGCTGTCATT-TCACCAGTCACAGCC--- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610421 87 + 2232271 TTAC----AGTAGAATTCTGTATTATTATGGCAAAATATGACTTTGAAGTTTGCAAATTTGGCAGTTCTT---ATT-TTACTGGTCACAGATAAC i dasNov3.JH580157 C 0 C 0 a score=672537.000000 s hg38.chr2_KI270769v1_alt 86784 65 + 120616 TCAT-AAGTTGACGTAGGACCTGCTCATATTATACCAATATTTTAA-GTATTTTATGTTTCATCTTA s panTro5.chr2A 3548743 65 + 111504155 TCGT-AAGTTGACTTAGGACCTGCTCATATTATACCAATATTTTAA-GTATTTTATGTTTTATCTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409487 65 + 114371477 TCGT-AAGTTGACTTAGGACCTGCTCATATTATACCAATATTTTAA-GTATTTTATGTTTTATCTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287344 65 + 637652 TCAT-AAGTTGACTTAGGACCTGCTCATATTATACCAATATTTTAA-GTATTTTATGTTTCATCTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084346 65 + 81552678 TCAT-AAGTTGACTTGGGACCTGCTCATATTATACCAATATTTTAA-GTATTTTATGTTTCATTTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3347148 65 + 108979918 TCAT-AAATTGGCTTGGGACCTGCTCATATTATACCAGTATTTTAA-GTATTTTATGTTTCATCTTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5057968 65 - 111193037 TCAT-AAATTGGCTTGGGACCTGCTCATATTATACCAGTATTTTAA-GTATTTTATGTTTCATCTTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450596 65 + 3644372 TCAT-AAATTGGCTTGGGACCTGCTCATATTATACCAGTATTTTAA-GTATTTTATGTTTCATCTTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3406947 65 - 10304083 TCAT-AAGTTGGCTTGGGACCTGCTCATATTATACCAGTATTTTAA-GTATTTTATGTTTCATCTTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3508193 65 - 107702431 TCAT-AAGTTGGCTTGGGACCTGCTCATATTATACCAATATTTTAA-GTATTTTATGTTTCATCTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038852 65 + 1565135 TCAT-AAGTTGGCTTGGGACCTGCTCATATTATACCAGTATTTTAA-GTATTTTATGTTTCATCTTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403041 65 - 13651311 TCAT-AAGTTGACTTGGGACCTGCCCATATTATACCAATATTTTAA-GTATTTAATGTTTCATCTTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491552 65 - 108792865 CCAT-AAGTTGACTTGGGGCCTGCTCATATTATTCCAATATTTTAA-GTATTTTATGTTTCATCTTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135717 56 - 7082604 TCAT-AAGTTGACTTGGGGTCTGCTCATATTATACC---------A-GTATTTTATGTTTCATCTTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621802 65 + 5243153 TCAT-AAGTTGACTTGGGGCCTGCTCATATTGTACCAATATTTTAA-GTATTTTATGCTTCATCTTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3364800 65 + 7587287 TCCT-AAGTTGACTTGGGGCCTGCTCACATTATACCAATATTTTAA-GCATTTGATGTTTCATCTTA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2571290 37 + 5252280 --------------------CCACTCATATTTTATCATGATTTTAAGGTATTTT----------TAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91436064 43 - 120129022 TCAG-AAATTGACTTAGG--CTTGTTGTGTTTTACCA-------AA-GTTTGTT------------- i mm10.chr12 I 1 C 0 s canFam3.chr17 2064718 64 + 64289059 CAAA-AACCTGATTTGGGGCCTGC-CTTATTGTACCAAAACACAAT-GTGCCTTTTTTTTTTTTTCA i canFam3.chr17 C 0 I 6119 s dasNov3.JH580157 610508 61 + 2232271 CCATAAAATTAATTTGGGACTCAC-Catataatttttaaaatttaa-atattttatttat----tta i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672299 82 - 159902609 I e proCoq1.NW_012151163v1 984113 69 + 1238772 I a score=19054.000000 s hg38.chr2_KI270769v1_alt 86849 3 + 120616 TTA s panTro5.chr2A 3548808 3 + 111504155 TTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409552 3 + 114371477 TTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287409 3 + 637652 TTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084411 3 + 81552678 TTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3347213 3 + 108979918 CTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5058033 3 - 111193037 CTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450661 3 + 3644372 CTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3407012 3 - 10304083 CTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3508258 3 - 107702431 CTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038917 3 + 1565135 CTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403106 3 - 13651311 CTA i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2571327 3 + 5252280 TTA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 610569 3 + 2232271 tta i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672299 82 - 159902609 I e mm10.chr12 91436107 0 - 120129022 C e canFam3.chr17 2064782 6119 + 64289059 I e saiBol1.JH378218 3135773 0 - 7082604 C e proCoq1.NW_012151163v1 984113 69 + 1238772 I e cebCap1.NW_016107454v1 621867 0 + 5243153 C e aotNan1.NW_018509326v1 3364865 0 + 7587287 C e calJac3.chr14 3491617 0 - 108792865 C a score=100992.000000 s hg38.chr2_KI270769v1_alt 86852 8 + 120616 GTTATTCA s panTro5.chr2A 3548811 8 + 111504155 GTTATTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409555 8 + 114371477 GTTATTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287412 8 + 637652 GTTATTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084414 8 + 81552678 GTTATTCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3347216 8 + 108979918 GTTATTCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5058036 8 - 111193037 GTTATTCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450664 8 + 3644372 GTTATTCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3407015 8 - 10304083 GTTATTCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3508261 8 - 107702431 GTTGTTCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038920 8 + 1565135 GTTATTTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403109 8 - 13651311 GTTATTCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491617 7 - 108792865 -TTATTCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135773 7 - 7082604 -TTATTCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621867 7 + 5243153 -TTATTCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3364865 7 + 7587287 -TTATTCA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2571330 8 + 5252280 ATCATTCA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2070901 8 + 64289059 GTCATTTA i canFam3.chr17 I 6119 C 0 s dasNov3.JH580157 610572 8 + 2232271 gacattca i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672299 82 - 159902609 I e mm10.chr12 91436107 0 - 120129022 C e proCoq1.NW_012151163v1 984113 69 + 1238772 I a score=34286.000000 s hg38.chr2_KI270769v1_alt 86860 3 + 120616 TTT s panTro5.chr2A 3548819 3 + 111504155 TTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409563 3 + 114371477 TTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287420 3 + 637652 TTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084422 3 + 81552678 TTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3347224 3 + 108979918 TGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5058044 3 - 111193037 TGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450672 3 + 3644372 TGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3407023 3 - 10304083 TGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3508269 3 - 107702431 TTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038928 3 + 1565135 TGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403117 3 - 13651311 TTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491624 3 - 108792865 TTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135780 3 - 7082604 TTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621874 3 + 5243153 TTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3364872 3 + 7587287 TTT i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 984182 3 + 1238772 ttt i proCoq1.NW_012151163v1 I 69 C 0 s otoGar3.GL873658 2571338 3 + 5252280 TTT i otoGar3.GL873658 C 0 I 8 s canFam3.chr17 2070909 2 + 64289059 -TT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610580 3 + 2232271 ttt i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672299 82 - 159902609 I e mm10.chr12 91436107 0 - 120129022 C a score=897971.000000 s hg38.chr2_KI270769v1_alt 86863 80 + 120616 ------TATTTTATCTAATGCTCTGCCAGAATTC--ATTCCAAAAGGTAAAAATTACTAAACTA-TAAGACTCTTAAATAAGGCGTGTA s panTro5.chr2A 3548822 80 + 111504155 ------TATTTTATCTAATGCTCTGCCAGAATTC--ATTCCAAAAGGTAAAAATTACTAAACTA-TAAGACTCTTAAATAAGGCCTGTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409566 80 + 114371477 ------TATTTTATCTAATGCTCTGCCAGAATTC--ATTCCAAAAGGTAAAAATTACTAAACTA-TAAGACTCTTAAATAAGGCCTGTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287423 80 + 637652 ------TATTTTATCTAATGCTCTGCCAGAATGC--ATTCCAAAAGGTAAAAATTATTAAACTA-TAAGACTCTTAAATAAGGCGTGTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084425 80 + 81552678 ------TGTTTTACCTAATGTTCTGCCAGAATTC--ATTCCAAAAGGTAAAAATTACTAAACTA-TAAGACTTTTAAATAAGGCGTGTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3347227 72 + 108979918 ------TATTTTACGTAATGCTCTGCCAG----C--ATTCCTAAAGGTACAAATTACTAAACTA-----ACTTTTAAATAAGGCATGTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5058047 72 - 111193037 ------TATTTTACGTAAAGCTCTGCCAG----C--ATTCCTAAAGGTACAAATTACTAAACTA-----ACTTTTAAATAAGGCATGTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450675 72 + 3644372 ------TATTTTACGTAATGCTCTGCCAG----C--ATTCCTAAAGGTACAAATTACTAAACTA-----ACTTTTAAATAAGGCATGTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3407026 77 - 10304083 ------TATTTTACGTAATGCTCTGCCAG----C--ATTCCTAAAGGTACAAATTACTAAACTAACAAGACTTTTAGATAAGGCATGTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3508272 77 - 107702431 ------TATTTTACGTGATGCTCTGCTAG----C--ATTCCAAAAGGTACAAATGACTAAACTAATAAGACTTTTAAATAAGGCATGTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1038931 79 + 1565135 ------TATTTTACGTAATGCTCTGCCAG----CATATTCCAAAAGGCACAAATTACTAAACTAACAAGACTTTTAAATAAGGCATGTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403120 77 - 13651311 ------TATTTTATGTAATGCTCTGCTAG----C--ATTCCAAAAGGTACAAATTACTAAACTAGTAAGACTTTTAAATAAGGTATGTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491627 80 - 108792865 ------TATTTTACTTAATGCTCTGCCAGAATTC--ACTCCAAAAGGTAGAAATGACTAAACTG-TAAGACTTTCCAATAAGGCAGGGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135783 80 - 7082604 ------TATTTTACCTCATGCTCTGCCAGAATTC--ATTCCAAAAGGTAGAAATGACTAAACTA-TAAAGCTTTCAAATAAGGCACGGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621877 80 + 5243153 ------TATTTTACTTAATGCTCTGCCAGAATTC--ATTCCAAAAGGTGGAAATTACTAAACCG-TAAGACTTTCAAGTAAGGCACAGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3364875 80 + 7587287 ------TATTTTACTTAATGCTCTGCCAGAATTC--ATTCCGAAAGGTAGAAGTTACTGAACTC-TAAGACTTTCAGGTCAGGCACGGA i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2672381 80 - 159902609 ------TATTTTACTTAATGCTATGCCAGAATTC--ATTTCAAAGGGTACAAGTTACTAAGCTG-TAAGACTTGTAAAGAAGGCGTGTA i micMur3.chr8 I 82 I 210 s proCoq1.NW_012151163v1 984185 80 + 1238772 ------tattttacttAATGCTATGCCAGAATTC--ATTTCAAAGGGTACAAGTTACTAAGGTG-TAAGACTTATAAAGAGGGCGTGTA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2571349 68 + 5252280 ------TATTTTACTTAATGCAATGCCAGAATTC--ATTTCAAAGGGTACACGACTTTG-------------TATAAAGAATGCATGTT i otoGar3.GL873658 I 8 C 0 s mm10.chr12 91436107 74 - 120129022 ---------TTTACTGAGTGCTACACCAGAATTT--ATTCTCAGGGGCACA-GCTGCTAAGTTG-TAAG--TCTTGAACCAGGCATTCA i mm10.chr12 C 0 C 0 s canFam3.chr17 2070911 68 + 64289059 -------ATTTTACTTA-----CTACTAGGATTC--CTCTCAAAAGGTACAAATTA--AAACC--TAAGACTT---AATAAGGCAAGTG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610583 85 + 2232271 tatttttattttaCTTAATGCTATCCCAGTATTT--ACTTCAAAGGGTGCAGGTTACTGACCTG-TAAGATTTTTTAATGAGGCAATG- i dasNov3.JH580157 C 0 C 0 a score=233105.000000 s hg38.chr2_KI270769v1_alt 86943 28 + 120616 TATTAGCAACTT------------------AGTTTCTGACATATAG s panTro5.chr2A 3548902 28 + 111504155 TATTAGCAACTT------------------AGTTTCTGACATATAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409646 28 + 114371477 TATTAGCAACTT------------------AGTTTCTGACATATAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287503 28 + 637652 TATTAGCAACTT------------------AGTTTCTGACATATAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084505 28 + 81552678 TATCAGCAAGTT------------------AGTTGCTGACACATAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3347299 28 + 108979918 CATTAGCAACAC------------------AGTTTCCGACATGTAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5058119 28 - 111193037 CATTAGCAACGC------------------AGTTTCCGACATGTAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450747 28 + 3644372 CATTAGCAACGC------------------AGTTTCCGACATATAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3407103 28 - 10304083 TATTAGCAACGC------------------AGTTTCCGACATATAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3508349 28 - 107702431 TATTAGCAACGT------------------AGTTTCTGACATACAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1039010 28 + 1565135 TATTAGCAACGT------------------AGTTTCCGACATATAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403197 28 - 13651311 TATTAGCAACTT------------------AGTTTCTGACATAGAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491707 19 - 108792865 CCCTGGCAGCTT------------------GGTCTCC--------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135863 27 - 7082604 TACTAGCAGCTT------------------GGTCTCTGACTCAGA- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 621957 28 + 5243153 TACTAGCAGCTT------------------AGTCTCTGACATAGAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3364955 27 + 7587287 TCCTAG-AGCTT------------------AGTCTCTGACATAGAG i aotNan1.NW_018509326v1 C 0 I 56 s proCoq1.NW_012151163v1 984265 28 + 1238772 TGTTAACAGCTG------------------AATCTCTGACATGTAG i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2571417 27 + 5252280 TATTAACACCTT------------------AAT-TCTGACACACAG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91436181 46 - 120129022 TATTAACATAATTCGCTGTCAGAGACGAGAAGCACCAGACACTTTG i mm10.chr12 C 0 I 25 s canFam3.chr17 2070979 22 + 64289059 ------CATTTT------------------CCTTCCTGACCTACAG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610668 28 + 2232271 CTTTAATAACTT------------------AATTTCTGAACTGTAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672461 210 - 159902609 I a score=10028.000000 s hg38.chr2_KI270769v1_alt 86971 1 + 120616 A s panTro5.chr2A 3548930 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409674 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287531 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084533 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3347327 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5058147 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450775 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3407131 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3508377 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1039038 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403225 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 621985 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 I 50 s proCoq1.NW_012151163v1 984293 1 + 1238772 A i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2571444 1 + 5252280 A i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91436252 1 - 120129022 G i mm10.chr12 I 25 C 0 s canFam3.chr17 2071001 1 + 64289059 G i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610696 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672461 210 - 159902609 I e saiBol1.JH378218 3135890 0 - 7082604 C e aotNan1.NW_018509326v1 3364982 56 + 7587287 I e calJac3.chr14 3491726 0 - 108792865 C a score=279234.000000 s hg38.chr2_KI270769v1_alt 86972 27 + 120616 ACATTAACATTCCACTGTATC-TTAAAT s panTro5.chr2A 3548931 27 + 111504155 ACATTAACATTCCACTGTATC-TTAAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409675 27 + 114371477 ACATTAACATTCCACTGTATC-TTAAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287532 27 + 637652 ACATTAACATTCCACTGTATC-TTAAAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084534 27 + 81552678 ACATTAACGTTCCACTGTATC-TCAAAT i nomLeu3.chr19 C 0 I 298 s rheMac8.chr13 3347328 27 + 108979918 ACATTAACATTCCACTGTATC-TTAAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5058148 27 - 111193037 ACATTAACATTCCACTGTATC-TTAAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450776 27 + 3644372 ACATTAACATTCCACTGTATC-TTAAAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3407132 27 - 10304083 ACATTAACATTCCACTGTATC-TTAAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3508378 27 - 107702431 ACATTAACATTCCACTGTATC-TTAAAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1039039 27 + 1565135 ACATTAACATTCCACTGTATC-TTAAAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403226 27 - 13651311 ACATTAACATTCCACTGTATC-TTAAAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491726 25 - 108792865 --GTTAGCGTTCCACTGTACG-GTGAAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3135890 25 - 7082604 --GTCAGCGCTCCACGGTTCG-GTGAAC i saiBol1.JH378218 C 0 C 0 s proCoq1.NW_012151163v1 984294 27 + 1238772 ACGTCGACATTCCACTGTATC-TTACGT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2571445 26 + 5252280 ACGTTGACACTCCACTGTA-C-CTAAAT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91436253 26 - 120129022 ATGTTAACCTGAGACTGTCT--TTAAAT i mm10.chr12 C 0 C 0 s canFam3.chr17 2071002 26 + 64289059 -CATGGATGTTCCACTATATC-CTAAGT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610697 28 + 2232271 ATGTTGACACTCCACTGTATCTTTAAAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672461 210 - 159902609 I e cebCap1.NW_016107454v1 621986 50 + 5243153 I e aotNan1.NW_018509326v1 3364982 56 + 7587287 I a score=169164.000000 s hg38.chr2_KI270769v1_alt 86999 22 + 120616 GTCTTTTGCCTTTTTATTAAAA s panTro5.chr2A 3548958 22 + 111504155 GTCTTTTGCCTTTTTATTAAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409702 22 + 114371477 GTCTTTTGCCTTTTTATTAAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287559 22 + 637652 GTCTTTTGCCTTTTTATTAAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084859 22 + 81552678 GTCTTTTGCCTTTTTATTAAAA i nomLeu3.chr19 I 298 C 0 s rheMac8.chr13 3347355 22 + 108979918 GTCTTTTGCCTTTTTATAAAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5058175 22 - 111193037 GTCTTTTGCCTTTTTATAAAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3450803 22 + 3644372 GTCTTTTGCCTTTTTATAAAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3407159 22 - 10304083 GTCTTTTGCCTTTTTATAAAAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3508405 22 - 107702431 GTCTTTTGCCTTTTTATAAAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1039066 21 + 1565135 GTCTTTTGCCTTTTTAT-AAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403253 22 - 13651311 ATCTTTTGCCTTTTTATAAAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491751 20 - 108792865 GTCTCGT--CTTCTTACAAAAT i calJac3.chr14 C 0 I 6 s saiBol1.JH378218 3135915 20 - 7082604 GTCTCCT--CTCCTCACAGAAA i saiBol1.JH378218 C 0 I 6 s proCoq1.NW_012151163v1 984321 19 + 1238772 GTCTCTTGCCTTTTTAC---AA i proCoq1.NW_012151163v1 C 0 I 2 s otoGar3.GL873658 2571471 22 + 5252280 GTCTCTTGTCGTTTTACAAAAA i otoGar3.GL873658 C 0 I 2 s mm10.chr12 91436279 9 - 120129022 GTCTCCTGC------------- i mm10.chr12 C 0 C 0 s canFam3.chr17 2071028 20 + 64289059 GGCATTCGC--TTTCACCAAAC i canFam3.chr17 C 0 I 2 s dasNov3.JH580157 610725 21 + 2232271 GTCACTTG-CTTTTTACAAAAA i dasNov3.JH580157 C 0 I 2 e micMur3.chr8 2672461 210 - 159902609 I e cebCap1.NW_016107454v1 621986 50 + 5243153 I e aotNan1.NW_018509326v1 3364982 56 + 7587287 I a score=56878.000000 s hg38.chr2_KI270769v1_alt 87021 6 + 120616 AATGAT s panTro5.chr2A 3548980 6 + 111504155 AATGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409724 6 + 114371477 AATGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287581 6 + 637652 AATGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084881 6 + 81552678 AATCAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3347377 6 + 108979918 AGTGAT i rheMac8.chr13 C 0 I 3 s macFas5.chr13 5058197 6 - 111193037 AGTGAT i macFas5.chr13 C 0 I 3 s macNem1.NW_012011978v1 3450825 6 + 3644372 AGTGAT i macNem1.NW_012011978v1 C 0 I 3 s cerAty1.NW_012000820v1 3407181 6 - 10304083 AGTGAT i cerAty1.NW_012000820v1 C 0 I 3 s chlSab2.chr14 3508427 6 - 107702431 AATGAT i chlSab2.chr14 C 0 I 3 s manLeu1.NW_012104432v1 1039087 6 + 1565135 AGTGAT i manLeu1.NW_012104432v1 C 0 I 3 s colAng1.NW_012118821v1 3403275 6 - 13651311 AATGAT i colAng1.NW_012118821v1 C 0 I 3 s calJac3.chr14 3491777 3 - 108792865 ---GAT i calJac3.chr14 I 6 I 3 s saiBol1.JH378218 3135941 3 - 7082604 ---GAT i saiBol1.JH378218 I 6 I 3 s cebCap1.NW_016107454v1 622036 3 + 5243153 ---GAT i cebCap1.NW_016107454v1 I 50 I 3 s proCoq1.NW_012151163v1 984342 6 + 1238772 AATGAT i proCoq1.NW_012151163v1 I 2 I 9 s otoGar3.GL873658 2571495 6 + 5252280 AAAGAT i otoGar3.GL873658 I 2 I 3 s mm10.chr12 91436288 4 - 120129022 --TCAC i mm10.chr12 C 0 C 0 s canFam3.chr17 2071050 6 + 64289059 AACGAC i canFam3.chr17 I 2 I 1 s dasNov3.JH580157 610748 6 + 2232271 AATGAT i dasNov3.JH580157 I 2 C 0 e micMur3.chr8 2672461 210 - 159902609 I e aotNan1.NW_018509326v1 3364982 56 + 7587287 I a score=1351219.000000 s hg38.chr2_KI270769v1_alt 87027 121 + 120616 ---TAAATGGTT---ACTGAAGTTTTCCTCTGCCTGACATATAAATGTCTTCATATTCTAACATGATATTAGGGAACTAAATATATGAGTATAGACTTAATATTTCT-----T---TTGTCAACTAAACTGACTA s panTro5.chr2A 3548986 116 + 111504155 ---TAAATGGTT---ACTGAAGTTTTCCTCTGCCTGACATATAAATGTCTTCATATTCTAACATGATATTAGGGAACTAAATATATGAGTATAGACTTAATA----------T---TTGTCAACTAAACTGACTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409730 116 + 114371477 ---TAAATGGTT---ACTGAAGTTTTCCTCTGCCTGACATATAAATGTCTTCATATTCTAACATGATATTAGGGAACTAAATATATGAGTATAGACTTAATA----------T---TTGTCAACTAAACTGACTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287587 121 + 637652 ---TAAATGGTT---ACTGAAGTTTTCCTCTGCCTGACATATAAATGTCTTCATATTCTAACATGATATTAGGGAACTAAATATATGAGTATAGACTTAATATTTCT-----G---TTGTCAACTAAACTGACTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3084887 121 + 81552678 ---TAAATGGTT---ACTGAAGTTTTCCTCTGCCTGACATATAAATGTCTTCATATTCTAACATGATATTAGGGAACTAAATATATGAGTATAGACTTAATATATCT-----T---TTGTCAACTAAACTGACTA i nomLeu3.chr19 C 0 I 3 s rheMac8.chr13 3347386 121 + 108979918 ---TAAACGTTT---ACTGAAGTTTTCCTCTGCCTGACATGTAAATGTCTTCATATTGTAACATGATATTAGGGAACTAAATGTACGAGTTTCGACTTAATATTTCT-----T---TTGTCAACTAAACTGACTA i rheMac8.chr13 I 3 C 0 s macFas5.chr13 5058206 121 - 111193037 ---TAAACGTTT---ACTGAAGTTTTCCTCTGCCTGACATGTAAATGTCTTCATATTGTAACATGATATTAGGGAACTAAATGTACGAGTTTCGACTTAATATTTCT-----T---TTGTCAACTAAACTGACTA i macFas5.chr13 I 3 C 0 s macNem1.NW_012011978v1 3450834 121 + 3644372 ---TAAACGTTT---ACTGAAGTTTTCCTCTGCCTGACATGTAAATGTCTTCATATTGTAACATGATATTAGGGAACTAAATGTACGAGTTTCGACTTAATATTTCT-----T---TTGTCAACTAAACTGACTA i macNem1.NW_012011978v1 I 3 C 0 s cerAty1.NW_012000820v1 3407190 121 - 10304083 ---TAAATGTTT---ACTGAAGTTTTCCTCTGCCTGACATGTAAATGTCTTCATATTGTAACATGATATTAGGGAACTAAATGTACGAGTATCGACTTAATATTTCT-----T---TTGTCAACTAAACTGACTA i cerAty1.NW_012000820v1 I 3 C 0 s chlSab2.chr14 3508436 120 - 107702431 ---TAAATGTTT---ACTGAAGTTTTCCTCTGCCTGACATGTAACTGTCTTCATATTGTAACATG-TATTAGGGAACTAAATGTACGAGTATCGACTTAATATTTCT-----T---TTGTCAACTAAACTGACTA i chlSab2.chr14 I 3 C 0 s manLeu1.NW_012104432v1 1039096 121 + 1565135 ---TAAATGTTT---ACTGAAGTTTTCCTCTGCCTGACATGTAAATGTCTTCATATTGTAACATGATATTAGGGAACTAAATGTACGAGTATCGACTTAATATTTCT-----T---TTGTCAGCTAAACTGACTA i manLeu1.NW_012104432v1 I 3 C 0 s colAng1.NW_012118821v1 3403284 121 - 13651311 ---TAAATGTTT---ACTGAAGTTTTCCTCTGCCTGACATGTAAATGTCTTCATATTGTAACGTGATATTAGGGAACTAAATGTACGAGTATCGACTTAATATTTCT-----T---TTGTCAACTAAACCAACTA i colAng1.NW_012118821v1 I 3 C 0 s calJac3.chr14 3491783 121 - 108792865 ---TAAATGGTC---ACTCCGGCTTGCCTCTGCCTGACATACCCGCGTCTTCATATTCTGATGTGCCCTTAGGGAACTGAACATATGGGTGTAGACTTCATATTTCT-----T---TTGTCAACTAAACTGACTA i calJac3.chr14 I 3 I 3 s saiBol1.JH378218 3135947 119 - 7082604 ---TCAATGGGC---ACTCGGGTTT-CCTCTGCCCGACACACACG-GTCTTCACGTTCTAACGTGCCATTAGGGAACTAAACATGTGGGTATAGACTTCGTATTTCT-----T---TTGTCAACTAAACTAACTA i saiBol1.JH378218 I 3 I 3 s cebCap1.NW_016107454v1 622042 121 + 5243153 ---TAAATGGTC---ACTCAGGTTTCCCTCTGCCTGGCACACACGCGTCTTCATATTCTAACGTGCCATTAGGGAACTACACATATGGGTATAGACTTCATATTTCT-----T---TTGTCAACTAAACTGACGA i cebCap1.NW_016107454v1 I 3 I 3 s aotNan1.NW_018509326v1 3365038 121 + 7587287 ---TAAATGGTC---ACTCGGGTTTTCCTCTGCCTGTCACACACGTGTCTTCATATTCTAACGTGCCATTAGGGAACTAAACATATGGGTATAGACTTCATATTTCT-----T---TTGTCAACTAAACTGACTA i aotNan1.NW_018509326v1 I 56 I 3 s proCoq1.NW_012151163v1 984357 119 + 1238772 ---CTAATGATTAAAACTGATGTATTCTCCTGCCCGACACATTAGTGTCTTCATATTATAACATGATATTAGGAAAC----TATGTGGGTACAGACTT-ACATTTAA-----T---TTGTCAAATAAACTGACTA i proCoq1.NW_012151163v1 I 9 I 3 s otoGar3.GL873658 2571504 120 + 5252280 ---CAAATGTTT---ACAGATGTTCTCCCCTGCCTGACACGTTAATGTCTTCATATTCTAACATGATATTGGGCAACTATATATGTGGGTGTAGACTT-ACATTTAA-----A---TTGGCAAATAAACTGACTA i otoGar3.GL873658 I 3 I 3 s mm10.chr12 91436292 117 - 120129022 ---TGAGTGGGC---TCTGGGAT---CCCCTGTATAACATACAGGGAACTTCCTCTTCTGACATGATACT-GGGAAC---AACTGTGATTTTTACATTTACCTCTTT-----TAACCTGTCAGCTAACCTGACTG i mm10.chr12 C 0 I 3 s canFam3.chr17 2071057 111 + 64289059 ---GGGGCGGTT---CCCAGAGTTT--CCCCACCTG-TGCAAGCATATCCTCCTCGCCCAGCCCACCA----GCAACTCTAGGTGTGGATGTACGTTTACTAGT--------T---GTGTTACCTGAACTGATTA i canFam3.chr17 I 1 I 3 s dasNov3.JH580157 610754 114 + 2232271 TAGCAAATGGTT---ACTGAAGG---------------ACATAAATATCTTCAGATTCTAATAAGGTATTAGTGAACTATATATGTGGATGTTGATTTAATATGTCTTCTAAT---TCATCAGCCTAATTGACTA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672461 210 - 159902609 I a score=2241157.000000 s hg38.chr2_KI270769v1_alt 87148 115 + 120616 AATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGACGTTGAGAAAGTAACACAGAAATTAGATGGACTACAGGGTAAAATCATGGTTTTGATGAAC s panTro5.chr2A 3549102 115 + 111504155 AATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGACGTTGAGAAAGTGACACAGAAATTAGATGGACTACAGGGTAAAATCATGGTTTTGATGAAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409846 115 + 114371477 AATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGACGTTGAGAAAGTGACACAGAAATTAGATGGACTACAGGGTAAAATCATGGTTTTGATGAAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287708 115 + 637652 AATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGACGTTGAGAAAGTGACACAGAAATTAGACGGACTACAGGGTAAAATCATGGTTTTGATGAAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085011 115 + 81552678 AATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGACGTTGAGAAAGTAACACAGAAATTAGATGGACTACAGGGTAAAATCATGGTTTTAATGAAC i nomLeu3.chr19 I 3 C 0 s rheMac8.chr13 3347507 115 + 108979918 CATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGATGTTGAGAAAGTAACACAGAAATTAGATGGACTACAGGGTAAAATCATGGTCTTAATGAAC i rheMac8.chr13 C 0 I 547 s macFas5.chr13 5058327 115 - 111193037 CATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGATGTTGAGAAAGTAACACAGAAATTAGATGGACTACAGGGTAAAATCATGGTCTTAATGAAC i macFas5.chr13 C 0 I 561 s macNem1.NW_012011978v1 3450955 115 + 3644372 CATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGATGTTGAGAAAGTAACACAGAAATTAGATGGACTACAGGGTAAAATCATGGTCTTAATGAAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3407311 115 - 10304083 CATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGATGTTGAGAAAGTAACACAGAAATTAGATGGACTACAGGGTAAAATCATGGTCTTAATGAAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3508556 115 - 107702431 CATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGATGTTGAGAAAGTAACACAGAAATTAGATGGACTACAGGGTAAAATCATGGTCTTAATGAAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1039217 115 + 1565135 CATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGATGTTGAGAAAGTAACACAGAAATTAGATGGACTACAGGGTAAAATCATGGTCTTAATGAAC i manLeu1.NW_012104432v1 C 0 I 688 s colAng1.NW_012118821v1 3403405 115 - 13651311 AATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGATGTTGAGAAAGTAACACAGAAATTAGATGGACTACAGGGTAAAATCATGGTCTTAATGAAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3491907 115 - 108792865 GATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAGAAGTATTTTCAGGACGTTGAGAAAGTAACACAGAAACTGGACGGACTACAGGGTAAAATCATGGTTTTAATGAAC i calJac3.chr14 I 3 C 0 s saiBol1.JH378218 3136069 115 - 7082604 GATTTTGTCAAGGCAGATTGGAGACATAAAAACGGCTGAAAAGTATTTTCAAGACGTTGAGAAAGTAACGCAGAAATTGGATGGACTACAGGGTAAAATCATGGTTTTAATGAAC i saiBol1.JH378218 I 3 C 0 s cebCap1.NW_016107454v1 622166 115 + 5243153 GATTTTGTCAAAGCAGATTGGCGACATAAAAACAGCTGAAAAATATTTTCAAGACGTTGAGAAAGTAACGCAGAAATCGGGTGGACTACAGGGTAAAATCACGGTTTTAATGAAC i cebCap1.NW_016107454v1 I 3 C 0 s aotNan1.NW_018509326v1 3365162 115 + 7587287 GATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGACGTTGAGAAAGTAACGCAGAAATTGGATGGACTACAGGGTAAAATCATGGTTTTAATGAAC i aotNan1.NW_018509326v1 I 3 C 0 s micMur3.chr8 2672671 115 - 159902609 AATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAGAAGTATTTTCAAGAAGTTGAGAAAGTGACACAGAAACTGGATGGACCACAGGGGAAAATAATGGTTTTAATGAAC i micMur3.chr8 I 210 C 0 s proCoq1.NW_012151163v1 984479 115 + 1238772 AATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGAAGTTGAGAAAGTGACACAGAAATTGGACGGACCACAGGGTAAAATAATGGTTTTAATGAAC i proCoq1.NW_012151163v1 I 3 C 0 s otoGar3.GL873658 2571627 115 + 5252280 AATTTTGTCCAAACAGATTGGAGACATAAAAACAGCCGAAAAGTATTTTCAAGAAGTTGAGAAAGTGGCACAGAAATTGGATGGACTGCAGGGCAAAATAATGGTTTTAATGAAC i otoGar3.GL873658 I 3 C 0 s mm10.chr12 91436412 115 - 120129022 AACTTTGTTAAAGCAGATCGGAGACATAAAAACAGCTGAAAAATATTTTCAAGACGTTGAGAAAGTAACTCAGAAGTTGGATGGACTGCAGGGTAAAATAATGGTCCTAATGAAC i mm10.chr12 I 3 C 0 s canFam3.chr17 2071171 115 + 64289059 AACTCTGTCCAGGCAGATTGGAGACATAAAAACAGCTGAGAAGTATTTTCAAGACGTGGAGAAAGTAACACAGAAATTGGATGGACTACAAGGCAGGATAATGGTTTTAATGAAC i canFam3.chr17 I 3 C 0 s dasNov3.JH580157 610868 114 + 2232271 -ATTTTGTCAAAGCAGATTGGAGACATAAAAACAGCAGAAAAATATTTTCAAGATGTTGAGAAAGTAACACAGAAATTGGATGGACTACAGGGAAAAATAATGGTTTTGATGAAC i dasNov3.JH580157 C 0 C 0 a score=240826.000000 s hg38.chr2_KI270769v1_alt 87263 13 + 120616 AGGTAAATATTTT s panTro5.chr2A 3549217 13 + 111504155 AGGTAAATATTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409961 13 + 114371477 AGGTAAATATTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287823 13 + 637652 AGGTAAATATTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085126 13 + 81552678 AGGTAAATATTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348169 13 + 108979918 aggtaaatatttt i rheMac8.chr13 I 547 C 0 s macFas5.chr13 5059003 13 - 111193037 AGGTAAATATTTT i macFas5.chr13 I 561 C 0 s macNem1.NW_012011978v1 3451070 13 + 3644372 AGGTAAATATTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3407426 13 - 10304083 AGGtaaatatttt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3508671 13 - 107702431 AGGTAAATATTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040020 13 + 1565135 AGGTAAATATTTT i manLeu1.NW_012104432v1 I 688 C 0 s colAng1.NW_012118821v1 3403520 13 - 13651311 AGGTAAATATTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492022 13 - 108792865 AGGTAAATATTCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136184 13 - 7082604 AGGTAACTATTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622281 13 + 5243153 AGGTAAATATTTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3365277 13 + 7587287 AGGTAAATATTTT i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2672786 13 - 159902609 AGGTAAATATTTT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 984594 13 + 1238772 AGGTAAATATTTT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2571742 13 + 5252280 AGGtaaatatttt i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91436527 13 - 120129022 AGGTAAATATCTT i mm10.chr12 C 0 I 590 s canFam3.chr17 2071286 13 + 64289059 AGGTAAGCCTCAT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610982 13 + 2232271 AGGTTTGTATTTT i dasNov3.JH580157 C 0 C 0 a score=10465.000000 s hg38.chr2_KI270769v1_alt 87276 1 + 120616 A s panTro5.chr2A 3549230 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409974 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287836 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085139 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348182 1 + 108979918 a i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059016 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3451083 1 + 3644372 A i macNem1.NW_012011978v1 C 0 I 484 s cerAty1.NW_012000820v1 3407439 1 - 10304083 a i cerAty1.NW_012000820v1 C 0 I 919 s chlSab2.chr14 3508684 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040033 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403533 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492035 1 - 108792865 A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136197 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622294 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3365290 1 + 7587287 A i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2672799 1 - 159902609 G i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 984607 1 + 1238772 A i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2571755 1 + 5252280 t i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2071299 1 + 64289059 G i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610995 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91436540 590 - 120129022 I a score=291787.000000 s hg38.chr2_KI270769v1_alt 87277 26 + 120616 AAACTAAATATATGTTTTCTCAAATT s panTro5.chr2A 3549231 26 + 111504155 AAACTAAATATATGTTTTCTCAAATT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3409975 26 + 114371477 AAACTAAATATATGTTTTCTCAAATT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287837 26 + 637652 AAACTAAATATATGTTTTCTCAAATT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085140 26 + 81552678 AAACTAAATATATGTTTTCTCAAATT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348183 26 + 108979918 aaactaaatatatGTTTTCTCAAAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059017 26 - 111193037 AAACTAAATATATGTTTTCTCAAAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3451568 26 + 3644372 AAACTAAATATATGTTTTCTCAAATT i macNem1.NW_012011978v1 I 484 I 279 s chlSab2.chr14 3508685 26 - 107702431 AAACTAAATACATATTTTCTCAAAAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040034 26 + 1565135 AAACTAAATATATGTTTTCTCAAAAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403534 26 - 13651311 AAACTAAATACATGTTTTCTCAAATT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492036 23 - 108792865 AAACTAAATAGATGTTTTCT---ATT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136198 23 - 7082604 AAACTAAACGGATGTTTTCT---ATT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622295 23 + 5243153 AAACTAAATAGATGTTTTCT---ATT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3365291 23 + 7587287 AAACTAAATAGATGTTTTCT---GTT i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2672800 26 - 159902609 AAACTAAATGTATATTTTATCAAATT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 984608 26 + 1238772 AAACTAAATATATTTTTTATCAAATT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2571756 26 + 5252280 aaactaaatatatatattaCCAAATT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2071300 20 + 64289059 ---CGACA---GTATTTTCTCAGATT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 610996 25 + 2232271 AAACTAAATATGT-TTTTCTCAGATT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91436540 590 - 120129022 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I a score=60040.000000 s hg38.chr2_KI270769v1_alt 87303 4 + 120616 TCCC s panTro5.chr2A 3549257 4 + 111504155 TCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410001 4 + 114371477 TCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287863 4 + 637652 TCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085166 4 + 81552678 TCTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348209 4 + 108979918 TCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059043 4 - 111193037 TCCC i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508711 4 - 107702431 TCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040060 4 + 1565135 TCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403560 4 - 13651311 TCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492059 4 - 108792865 TCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136221 4 - 7082604 TCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622318 4 + 5243153 TCCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3365314 4 + 7587287 TCCC i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2672826 4 - 159902609 TCCC i micMur3.chr8 C 0 I 80 s proCoq1.NW_012151163v1 984634 4 + 1238772 TCCC i proCoq1.NW_012151163v1 C 0 I 62 s otoGar3.GL873658 2571782 4 + 5252280 TCCC i otoGar3.GL873658 C 0 I 1 s canFam3.chr17 2071320 4 + 64289059 TCCT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 611021 4 + 2232271 TCCT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91436540 590 - 120129022 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=297993.000000 s hg38.chr2_KI270769v1_alt 87307 45 + 120616 AGAGGCGTTCAAGCCCCACTTACTGAGTTGGAAAGCTCCCTAGAG s panTro5.chr2A 3549261 45 + 111504155 AGAGGCGTTCAAGCCCCACTTACTGAGTCGGAAAGCTCCCTAGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410005 45 + 114371477 AGAGGCGTTCAAGCCCCACTTACTGAGTCGGAAAGCTCCCTAGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287867 45 + 637652 AGAGGCGTTCAAGCCCCACTTACTGAGTCGGAAAGGTCCCTAGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085170 45 + 81552678 AGAGGCATTTAAGCCCCACTTACTGAGTAGGAAAGCTCCCTAGAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348213 44 + 108979918 AGAGGCGTTTAAGCCCCACTTACTGAGTGGGAAAGC-CCCCAGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059047 44 - 111193037 AGAGGCGTTTAAGCCCCACTTACTGAGTGGGAAAGC-CCCCAGAG i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508715 45 - 107702431 AGAGGCGTTTAAGCCCCACTTACTGAGTGGGAAAGCTCCCTGGAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040064 45 + 1565135 AGAGGCGTTTAAGCCCCACTTACTGAGTGGGAAAGCCCCCCAGAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403564 44 - 13651311 AGAGGCGTTTTCGCCCCACTCACTGAGTGGGAAAGC-CCTCAGAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492063 45 - 108792865 AGAGGAGTTTGAGCCCCGCTGACTGAGCAGGAAAGCTCCCTAAAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136225 45 - 7082604 AGCGGAGTGCGAGCCCCGCCGACCGAGCGGGAGAGCCCCCTAGAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622322 45 + 5243153 AGAGGAGTGTGAGCCCTGCTGACGGAGCAGGAAAGCTCCCTAGAG i cebCap1.NW_016107454v1 C 0 I 13 s aotNan1.NW_018509326v1 3365318 44 + 7587287 AGAGGAGTTTGAGCCCTGCTGACTGAGCAGGAAAGCTCCCTAGA- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2571787 33 + 5252280 CAAAGAGTTTAAGTTCTACTTACTGATCTGGAG------------ i otoGar3.GL873658 I 1 C 0 s canFam3.chr17 2071324 36 + 64289059 -GAGG-GCTCAGACTCTCCTTA-------GTAAAGCCCTCTAGGA i canFam3.chr17 C 0 I 1 s dasNov3.JH580157 611025 44 + 2232271 AAAAGAGTTTAAACTATATGAACTGACAAGTAAATC-CTCAAGAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672830 80 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e proCoq1.NW_012151163v1 984638 62 + 1238772 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=63930.000000 s hg38.chr2_KI270769v1_alt 87352 22 + 120616 AAGGCGCTTCTCCCTGTATCTC s panTro5.chr2A 3549306 22 + 111504155 AAGGCGCTTCTCCCGGTATCTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410050 22 + 114371477 AAGGCGCTTCTCCCGGTATCTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287912 22 + 637652 AAAGCGCTTCTCCCTGTATCTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085215 21 + 81552678 AC-GCGCTTCTCTCTGTGTCTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348257 22 + 108979918 AAAGCGCTTCTTTCTGTGCCGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059091 22 - 111193037 AAAGCGCTTCTTTCTGTGCCGC i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508760 22 - 107702431 AAAGCGCTTCTTTCTGTGCCGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040109 22 + 1565135 AAAGCGCTTCTTTCTGTGCCTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403608 22 - 13651311 AAAGCGCTTCTTTCTGTGCCTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492108 4 - 108792865 ---------------GCCT--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136270 15 - 7082604 ----CGCCCCTCTCTGCCT--- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3365362 16 + 7587287 ---GCACTTCTCTCTGTGT--- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2571820 22 + 5252280 AAAATATCCTCCTTTGTACCTC i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2071361 22 + 64289059 CAGCCTCCCAGCCCTGCACCCA i canFam3.chr17 I 1 C 0 s dasNov3.JH580157 611069 22 + 2232271 AAAATGTCCCTTTTCATACTTC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672830 80 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e proCoq1.NW_012151163v1 984638 62 + 1238772 I e cebCap1.NW_016107454v1 622367 13 + 5243153 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=110660.000000 s hg38.chr2_KI270769v1_alt 87374 11 + 120616 CTCTTGCCCTG s panTro5.chr2A 3549328 11 + 111504155 CTCTTGCCCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410072 11 + 114371477 CTCTTGCCCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287934 11 + 637652 CTCTTGCCCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085236 11 + 81552678 CTCTTGCCCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348279 11 + 108979918 CTCTTGCCCTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059113 11 - 111193037 CTCCTGCCCTG i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508782 11 - 107702431 CTCTTGCCCTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040131 11 + 1565135 CTCTTGCCCTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403630 10 - 13651311 CTCTTG-CCTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492112 11 - 108792865 CTCTTGCCCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136285 11 - 7082604 CTCTTGCCCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622380 11 + 5243153 CTCTTGCCCTG i cebCap1.NW_016107454v1 I 13 C 0 s aotNan1.NW_018509326v1 3365378 11 + 7587287 CTCTTGCCCTG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2571842 11 + 5252280 TTCCTGTCCTG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2071383 11 + 64289059 GACCTGACCCG i canFam3.chr17 C 0 I 7 s dasNov3.JH580157 611091 11 + 2232271 TTCCTGTCCTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672830 80 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e proCoq1.NW_012151163v1 984638 62 + 1238772 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=150071.000000 s hg38.chr2_KI270769v1_alt 87385 14 + 120616 TGTCTCTCAGAGCG s panTro5.chr2A 3549339 14 + 111504155 TGTCTCTCAGAGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410083 14 + 114371477 TGTCTCTCAGAGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287945 14 + 637652 TGTCTCTCAGAGCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085247 14 + 81552678 TGTCTCTCAGAACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348290 14 + 108979918 TGTCTCTCAGAACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059124 14 - 111193037 TGTCTCTCAGAACT i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508793 14 - 107702431 TCTCTCTCAGAACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040142 14 + 1565135 TGTCTCTCAGAACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403640 14 - 13651311 TGTCTCTCAGAACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492123 14 - 108792865 TGTCTCTCAGAACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136296 14 - 7082604 TGTCTCTCAGAGCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622391 14 + 5243153 TGTCTCTCAGAACT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3365389 14 + 7587287 TGTCTCTCAGAACT i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 984700 14 + 1238772 TGTCTCTCAGAACT i proCoq1.NW_012151163v1 I 62 I 2 s otoGar3.GL873658 2571853 14 + 5252280 TGCCTCTCAGAATT i otoGar3.GL873658 C 0 I 1 s canFam3.chr17 2071401 12 + 64289059 TCTCCATCACCA-- i canFam3.chr17 I 7 C 0 s dasNov3.JH580157 611102 14 + 2232271 TATCTCTCAGAACT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672830 80 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=60435.000000 s hg38.chr2_KI270769v1_alt 87399 5 + 120616 GAGAC s panTro5.chr2A 3549353 5 + 111504155 GAGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410097 5 + 114371477 GAGAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287959 5 + 637652 AAGAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085261 5 + 81552678 GAGAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348304 5 + 108979918 GAGAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059138 5 - 111193037 GAGAC i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508807 5 - 107702431 GAGAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040156 5 + 1565135 GAGAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403654 5 - 13651311 GAGAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492137 5 - 108792865 GAGAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136310 5 - 7082604 GAGAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622405 5 + 5243153 GAGAC i cebCap1.NW_016107454v1 C 0 I 32 s aotNan1.NW_018509326v1 3365403 5 + 7587287 GAGAC i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2672910 5 - 159902609 GAGAC i micMur3.chr8 I 80 C 0 s proCoq1.NW_012151163v1 984716 5 + 1238772 GAGAC i proCoq1.NW_012151163v1 I 2 C 0 s otoGar3.GL873658 2571868 4 + 5252280 GAGG- i otoGar3.GL873658 I 1 C 0 s dasNov3.JH580157 611116 5 + 2232271 GAGAC i dasNov3.JH580157 C 0 I 16 e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071413 0 + 64289059 C e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=272623.000000 s hg38.chr2_KI270769v1_alt 87404 33 + 120616 CCAAGGAGTATACAGGTGTTTTCTTGAATCGCA s panTro5.chr2A 3549358 33 + 111504155 CCAAGGAGTACACGGGTGTTTTCTTGAATTGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410102 33 + 114371477 CCAAGGAGTACACGGGTGTTTTCTTGAATTGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287964 33 + 637652 CCAAGGAGTACACGGGTGTTTTCTTGAATCGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085266 33 + 81552678 CCAAGGAGTACACGGGTGTTTTCTTGAATCGCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348309 33 + 108979918 CCAAGAAGTACACGGGTGATTTCTGGAATTGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059143 33 - 111193037 CCAAGAAGTACACGGGTGATTTCTGGAATTGCA i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508812 33 - 107702431 CCAAGAAGTACACGGGTGTTTTCTGGAATTGCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040161 33 + 1565135 CCAAGAAGTACACGGGTATTTTCTGGAATTGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403659 33 - 13651311 CCAAGAAGTACACGGGTGTTTTCTGGAATTGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492142 32 - 108792865 ACGGGAAGTACACGGGTG-TTTCGTGAATTGTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136315 32 - 7082604 ACGAGAAGCGTACGGGTG-TTCCCCGAATGCTG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3365408 32 + 7587287 ACCAGAAGTACACGGGTG-TCTCCTGAATTTTG i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2672915 33 - 159902609 CCAAGAAGTACACGGGCATTTTCTTGAATTTCA i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 984721 33 + 1238772 CCAAGGAGTACATGGGCATTTTCTCGAATTTCA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2571872 33 + 5252280 CCAAGAGGTACATGGGGATTTTCTTGAATTTCA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2071413 30 + 64289059 CCAGGACATGTGCTGCTGTCTCCTAGAACT--- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 611137 33 + 2232271 CCAAGAGGTAGAGTGGTGTTTCCTTGAATTGCC i dasNov3.JH580157 I 16 C 0 e mm10.chr12 91436540 590 - 120129022 I e cebCap1.NW_016107454v1 622410 32 + 5243153 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=322167.000000 s hg38.chr2_KI270769v1_alt 87437 31 + 120616 GTGATGTTCTTTTAGTCACAGAAGCTGATTT s panTro5.chr2A 3549391 31 + 111504155 GTGATGTTCTTTTAGTCACAGAAGCTGATTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410135 31 + 114371477 GTGATGTTCTTTTAGTCACAGAAGCTGATTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 287997 31 + 637652 GTGATGTTCTTTTAGTCACAGAAGCTGATTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085299 30 + 81552678 -TGATGTTCTTCTAGTCACAGCAGCTGATTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348342 31 + 108979918 GTGATGTTCTTTTAGTCACAGAAGCTGATTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059176 31 - 111193037 GTGATGTTCTTTTAGTCACAGAAGCTGATTT i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508845 31 - 107702431 GTGATGTTCTTTTAGTCACAGAAGCTGATTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040194 31 + 1565135 GTGATGTTCTTTTAGTCACAGAAGCTGATTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403692 31 - 13651311 GTGATGTTCTTTGAGTCACAGAAGCTGATTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492174 31 - 108792865 GTGATGTGCTTTTAGTCACAGAAGTGGATTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136347 31 - 7082604 GTGATGTGCCTTTAGTCACAGAGGCTGAGTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622442 31 + 5243153 GTGATGTGCTTTTAGTCACAGAAGCTGATTT i cebCap1.NW_016107454v1 I 32 I 165 s aotNan1.NW_018509326v1 3365440 31 + 7587287 GTGATGTGCTTTCAGTCACAGAAGCTGATTT i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2672948 31 - 159902609 GTGTTGTTCTTCTACTCACAAAAACTGATTT i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 984754 31 + 1238772 GTGTTGTTCTTTTACTCATAAAAACTGATTT i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2571905 28 + 5252280 ---TTGTTCTTTTAATCATAAAAACTGATTT i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2071443 28 + 64289059 -TAAAATCCATTAAGAC-CGGAAGATGCCT- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 611170 20 + 2232271 ATGATGTTCT-----------ATACTGATTT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91436540 590 - 120129022 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=9096.000000 s hg38.chr2_KI270769v1_alt 87468 1 + 120616 T s panTro5.chr2A 3549422 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410166 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288028 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085329 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348373 1 + 108979918 T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059207 1 - 111193037 T i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508876 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040225 1 + 1565135 T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403723 1 - 13651311 T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492205 1 - 108792865 T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136378 1 - 7082604 T i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3365471 1 + 7587287 T i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2672979 1 - 159902609 T i micMur3.chr8 C 0 I 461 s proCoq1.NW_012151163v1 984785 1 + 1238772 T i proCoq1.NW_012151163v1 C 0 I 427 s otoGar3.GL873658 2571933 1 + 5252280 G i otoGar3.GL873658 C 0 I 1 s dasNov3.JH580157 611190 1 + 2232271 T i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071471 0 + 64289059 C e cebCap1.NW_016107454v1 622473 165 + 5243153 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=-2515.000000 s hg38.chr2_KI270769v1_alt 87469 1 + 120616 -T s panTro5.chr2A 3549423 1 + 111504155 -T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410167 1 + 114371477 -T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288029 1 + 637652 -T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085330 1 + 81552678 -T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348374 1 + 108979918 -T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059208 1 - 111193037 -T i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508877 1 - 107702431 -T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040226 1 + 1565135 -T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403724 1 - 13651311 -T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492206 1 - 108792865 -C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136379 1 - 7082604 -C i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3365472 1 + 7587287 -C i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 611191 1 + 2232271 A- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071471 0 + 64289059 C e proCoq1.NW_012151163v1 984786 427 + 1238772 I e otoGar3.GL873658 2571934 1 + 5252280 I e cebCap1.NW_016107454v1 622473 165 + 5243153 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=34036.000000 s hg38.chr2_KI270769v1_alt 87470 6 + 120616 AAGGAG---- s panTro5.chr2A 3549424 6 + 111504155 AAGGAG---- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410168 6 + 114371477 AAGGAG---- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288030 6 + 637652 AAGGAG---- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085331 6 + 81552678 AAGGAG---- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348375 6 + 108979918 AAGGAG---- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059209 6 - 111193037 AAGGAG---- i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508878 6 - 107702431 AAGGAG---- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040227 6 + 1565135 AAGGAG---- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403725 6 - 13651311 AAGGAG---- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492207 6 - 108792865 AAGGCG---- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136380 6 - 7082604 AGGGAG---- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3365473 6 + 7587287 AAGGAG---- i aotNan1.NW_018509326v1 C 0 I 87 s otoGar3.GL873658 2571935 5 + 5252280 -AGGGG---- i otoGar3.GL873658 I 1 I 1 s canFam3.chr17 2071471 3 + 64289059 AAG------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 611192 6 + 2232271 ----AGATTT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e cebCap1.NW_016107454v1 622473 165 + 5243153 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=316754.000000 s hg38.chr2_KI270769v1_alt 87476 71 + 120616 CTA-TTCCCCC---TTGTTCTTCAGAGAAGCGCTTGTATT---GCCCCCGTTTTCAGCGTA---------TGTGTGTGTAAA-GGTCA s panTro5.chr2A 3549430 72 + 111504155 CTATTTCCCCC---TTGTTCTTCAGAGAAGCGCTTGTATT---GCCCCCGTTTGCAGCGTA---------TGTGTGCGTAAA-GGTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410174 72 + 114371477 CTATTTCCCCC---TTGTTCTTCAGAGAAGCGCTTGTATT---GCCCCCGTTTGCAGCGTA---------TGTGTGCGTAAA-GGTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288036 74 + 637652 CTA-TTCCCCC---TTGTTCTTCAGAGAAGCGCTTGTATTATAGCCCCCGTTTTCAGCGTA---------TGTGTGCGAAAA-GGTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085337 72 + 81552678 ATATTTCCCCC---TTGTTCTTCAGAGAAGTGCTTGTATT---GCCCCCGTTTTCAGCATA---------TGTGTGCGTAAA-GGTCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348381 72 + 108979918 ACATTTCCCCC---TTGTTCTTCAGAGTAGCGCTTGTATT---GCCCCCGTTTTCAGCATA---------TGTGTGCGTAAA-GGTCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059215 72 - 111193037 ACATTTCCCCC---TTGTTCCTCAGAGTAGCGCTTGTATT---GCCCCCGTTTTCAGCATA---------TGTGTGCGTAAA-GGTCA i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508884 71 - 107702431 ACGTTTCCCCC---TTGTTTTTCAGAGTAGCGCTTGTATT---GCCCCCGTTTTCAGCATA----------GTGTGTGTAAA-GGTCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040233 72 + 1565135 ACATTTCCCCC---TTGTTCTTCAGAGTAACGCTTGTATT---GCCCCCGTTTTCAGCATA---------TGTGTGCGTAAA-GGTCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403731 72 - 13651311 ACGTTTCCCCG---TTGTTCTTCAGAGGAGCGCGTGCATT---GCCCCCGTTTTCAGCATA---------TGTGTGCGTAAA-GGTCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492213 68 - 108792865 ACA-TTAACCC---TTGTTTTTTGGAGTACCGCTCATGTC---GCCCCCATTTTCATCAT-----------GCGTGCGTAAA-GGCC- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136386 65 - 7082604 ACA-TTCACCC---TCGTTCTCCGGAGCGCCGCTGGTACC---G--CCCGTTTCCCGCGT-----------GCGCGTGT-AA-GGCC- i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2571941 82 + 5252280 -CATTTCTCCCTGTTTGTTTCTCAAAGAACTGCTTGTGTC---A-CCCCACTGTCAGTGTAAGTTTGCTGAGTGCGCGTAGT-CTCCA i otoGar3.GL873658 I 1 C 0 s canFam3.chr17 2071474 55 + 64289059 -ATTTTTCCCC---TTGCT------------GTTGATATT---G--CCCGTCTGCA-CACA---------AATGTGTGTAAA-TATT- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 611198 69 + 2232271 -TTTTTTCCCC---TCATTCTTCAAACTA---CTTCTGTT---GTCCCCATTATCAGCGTA---------ATTTTGCCTAGATggcca i dasNov3.JH580157 C 0 I 425 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e cebCap1.NW_016107454v1 622473 165 + 5243153 I e aotNan1.NW_018509326v1 3365479 87 + 7587287 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=-2973.000000 s hg38.chr2_KI270769v1_alt 87547 65 + 120616 CCATTGCTGGCGTA---------------------GCGGCCGTTCTGGATCCTG-TGCTCTGGTG-------TTCTGTGTC----TGGATCCCGTGCT s panTro5.chr2A 3549502 65 + 111504155 CCATTGCTGGCGTA---------------------GCGGCCGTTCTGGATCCTG-TGCTCTGGTG-------TTCTGTGTC----TGGATCCTGTGCT i panTro5.chr2A C 0 I 140 s panPan2.chr2A 3410246 65 + 114371477 CCATTGCTGGCGTA---------------------GCGGCCGTTCTGGATCCTG-TGCTCTGGTG-------TTCTGTGTC----TGGATCCTGTGCT i panPan2.chr2A C 0 I 28 s gorGor5.CYUI01015435v1 288110 54 + 637652 CCATTGCTGGCGTA---------------------GCGGCCGTTCTGGATCGTG-TGCTTTGGTG-------TTCTGTGTC----TG----------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085409 37 + 81552678 CCATTGCTGACATA---------------------GCGGCCGTTCTGGATCCTG-TGCT--------------------------------------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348453 32 + 108979918 CCGTTGCCGGGATA---------------------GCAGCCGTTCTGGATCCT--------------------------------------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059287 32 - 111193037 CCGTTGCCGGGATA---------------------GCAGCCGTTCTGGATCCT--------------------------------------------- i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508955 32 - 107702431 CCATTGCTGGCACA---------------------GCAGCCGTTCTGGATCCT--------------------------------------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040305 32 + 1565135 CCGTTGCCGGCATA---------------------GCAGCCGTTCTGGACCCT--------------------------------------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403803 32 - 13651311 CCGTTGCCGGCAGA---------------------GCAGCCGTTCTGGATCCT--------------------------------------------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492281 8 - 108792865 -------------A---------------------GCATGCG-------------------------------------------------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136451 14 - 7082604 -------------G---------------------GCGGCCGCTCCGG-------------------------------------------------- i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2572023 56 + 5252280 CCtgtgtgtgcgcacacgtgtgcatgtgcgtgtgtgtgtgtgtTGAGGCCCGTG-TG----------------------------------------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2071529 76 + 64289059 -TGTTGTAAGTCTA---------------------GGCCCCCTCGTGCCCCCTGCTGCCTTAGTGCCTCTGTTTCTGTGTCCTCATGAGTCAAGCACA i canFam3.chr17 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I e cebCap1.NW_016107454v1 622473 165 + 5243153 I e aotNan1.NW_018509326v1 3365479 87 + 7587287 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=-5981.000000 s hg38.chr2_KI270769v1_alt 87612 22 + 120616 CTGGTGTTCTGTG------TCTGGATCC------------------- s panTro5.chr2A 3549707 22 + 111504155 CTGGTGTTCTGTG------TCTGGATCC------------------- i panTro5.chr2A I 140 C 0 s panPan2.chr2A 3410339 22 + 114371477 CTGGTGTTCTGTG------TCTGGATCC------------------- i panPan2.chr2A I 28 C 0 s gorGor5.CYUI01015435v1 288164 9 + 637652 -------------------TCTGGATCC------------------- i gorGor5.CYUI01015435v1 C 0 C 0 s saiBol1.JH378218 3136465 2 - 7082604 --------------------CT------------------------- i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2572079 17 + 5252280 --------CTGTG---CTCCCTGGAGGC------------------- i otoGar3.GL873658 C 0 I 4 s canFam3.chr17 2071605 39 + 64289059 --------CTGTGGGGCTGGCTGGGGGCAGAGGTTGACGATGGAGCC i canFam3.chr17 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I e cebCap1.NW_016107454v1 622473 165 + 5243153 I e aotNan1.NW_018509326v1 3365479 87 + 7587287 I e calJac3.chr14 3492289 0 - 108792865 C e colAng1.NW_012118821v1 3403835 0 - 13651311 C e manLeu1.NW_012104432v1 1040337 0 + 1565135 C e chlSab2.chr14 3508987 0 - 107702431 C e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I e macFas5.chr13 5059319 0 - 111193037 C e rheMac8.chr13 3348485 0 + 108979918 C e nomLeu3.chr19 3085446 0 + 81552678 C a score=172597.000000 s hg38.chr2_KI270769v1_alt 87634 37 + 120616 CGTGCTCTGGTGTTCTGTGGTAGAACGCACAGCGTCG s panTro5.chr2A 3549729 37 + 111504155 TGTGCTCTGGTGTTCTGTGGTAGAACGCACAGCGTCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410361 37 + 114371477 TGTGCTCTGGTGTTCTGTGGTAGAACGCACAGCGTCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288173 37 + 637652 TGTGCTCTGGTGTTCTGTGGTAGAACGCACAGCGTCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085446 31 + 81552678 ------CTGGTGTTCTGTGGCAGAACGCACAGCGCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348485 36 + 108979918 -GTGCTCTAGTGTTCTGTGGTAGAACGCACGGCATTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059319 36 - 111193037 -GTGCTCTGGTGTTCTGTGGTAGAACGCACGGCATTG i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3508987 36 - 107702431 -GTGCTCTGGTGTTCTGTGGTGGAACGCACGGCATTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040337 36 + 1565135 -GTGCTCTGGTGTTCTGTGGTAGAACGCATGGCATTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403835 36 - 13651311 -GTGCTCTGGCGTTCTCTGGCAGAACGCACGGCGTAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492289 34 - 108792865 ---GCCATTCTGGATCGTGGCAGAGGTCACAGTTCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136467 37 - 7082604 CGCGCTCTGCTGCGCCGCGGTGGAGGGCACAGCTCTG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3365566 37 + 7587287 CGTGCTCTGCCGTGCTGTGGTAGAGTGCACAGCTCTG i aotNan1.NW_018509326v1 I 87 C 0 s otoGar3.GL873658 2572100 35 + 5252280 CTGGCTGAAGCAGCAGGTGGTGGGC--CACAGCTTTG i otoGar3.GL873658 I 4 C 0 s canFam3.chr17 2071644 28 + 64289059 CGTGCCCAG---------GGCAGAGCTCACGCCATCA i canFam3.chr17 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I e cebCap1.NW_016107454v1 622473 165 + 5243153 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I e macNem1.NW_012011978v1 3451594 279 + 3644372 I a score=169593.000000 s hg38.chr2_KI270769v1_alt 87671 23 + 120616 TGCGAGTGCACGTTCGTGAGGAG s panTro5.chr2A 3549766 23 + 111504155 TGCGAGTGCACGTTCGTGAGGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410398 23 + 114371477 TGCGAGTGCACGTTCGTGAGGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288210 23 + 637652 TGCGAGTGCACGTTCGTGAGGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085477 23 + 81552678 TACGAGTGCACATTCGTGAGGAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348521 23 + 108979918 TGCGAGTGCACGTTTGTGAGGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059355 23 - 111193037 TGCGAGTGCACGTTTGTGAGGAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3451873 23 + 3644372 TGCGAGTGCACGTTTGTGAGGAG i macNem1.NW_012011978v1 I 279 C 0 s chlSab2.chr14 3509023 23 - 107702431 TGTGAGTGCACATTTGTGAGGAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040373 23 + 1565135 TGCGAGTGCACGTTTGTGAGGAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403871 23 - 13651311 TGCGAGTGCACGTTTGTGAGGAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492323 23 - 108792865 TGCCAGTGCACGTTTGTGAGGAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136504 20 - 7082604 TGCCCGCGCGTG---GTGGGGAG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3365603 23 + 7587287 TGCAAGTGCACGTTTGTGAGGAG i aotNan1.NW_018509326v1 C 0 I 12 s otoGar3.GL873658 2572135 19 + 5252280 ----TGTGAGCATCTGCTGAGAC i otoGar3.GL873658 C 0 I 1 s canFam3.chr17 2071672 19 + 64289059 TGCAGGTG----TCCTTGAAGAG i canFam3.chr17 C 0 I 101 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I e cebCap1.NW_016107454v1 622473 165 + 5243153 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I a score=34634.000000 s hg38.chr2_KI270769v1_alt 87694 15 + 120616 GAAACACGCCTT-GGA s panTro5.chr2A 3549789 15 + 111504155 GAAACACGCCTT-GGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410421 15 + 114371477 GAAACACGCCTT-GGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288233 15 + 637652 GAAACACGCCTT-GGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085500 15 + 81552678 GAAACACGCCTG-GGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348544 15 + 108979918 GAAACGCGCCTC-AGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059378 15 - 111193037 GAAACGCGCCTC-AGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3451896 14 + 3644372 G-AACGCGCCTC-AGA i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3509046 11 - 107702431 GAAACGTGCCT----- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040396 15 + 1565135 GAAACGCGCCTC-AGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403894 15 - 13651311 GAAACGCGCCTC-AGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492346 15 - 108792865 GAGTCACGCCCTGGG- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136524 14 - 7082604 TCGCCGCGCCCC-GG- i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2572155 14 + 5252280 GTCACACAAAGT-GA- i otoGar3.GL873658 I 1 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I e cebCap1.NW_016107454v1 622473 165 + 5243153 I e aotNan1.NW_018509326v1 3365626 12 + 7587287 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I a score=425749.000000 s hg38.chr2_KI270769v1_alt 87709 50 + 120616 CAAAGCCTGCAGCCAGGATCAGAAAGCGTAAATAAAGCAGGTGTCCG-CTT s panTro5.chr2A 3549804 50 + 111504155 CAAAGCCTGCACCCAGGATCAGAAAGCGTAAATGAAGCAGGTGTCCG-TTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410436 50 + 114371477 CAAAGCCTGCACCCAGGATCAGAAAGCGTAAATGAAGCAGGTGTCCG-TTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288248 50 + 637652 CAAAGCCTGCACCCAGGATCGGAAAGCATAAATGAAGCAGGTGTCCG-TTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085515 50 + 81552678 CAAAGCCTGCACCCAGGATCAGAAAGCCTAAATGAAGCAGGTGTCCG-TTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348559 50 + 108979918 GGAAGCCTGCACCCAGGATCAGAAAGCGTAAATGAAGCAGGTGTCCG-TTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059393 50 - 111193037 CGAAGCCTGCACCCAGGATCAGAAAGCGTAAATGAAGCAGGTGTCCG-TTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3451910 46 + 3644372 CAAAGCCTGCACCCAGGATCAGAAAGCGTA----TAGCAGGTGTCCG-TTT i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3509057 50 - 107702431 CAAAGCCTGCACCCAGGATCAGAAAGCATAAATGAAGCAGGTGTCCG-TTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040411 50 + 1565135 CAAAGCCTGCACCCAGGATCAGAAAGCGTAAATGAAGCAGGTGTCCG-TTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403909 50 - 13651311 CAAAGCCCGCACCCAGGATCAGAAAGCGTAAATGAAGCAGGTGTCCG-TTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492361 50 - 108792865 CAAAACCTGCCCTCAAGATCAGAAAGCAGAAATGAAGCAGGTGTCCG-TTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136538 51 - 7082604 CAAAGCCTGCACGCCAGGTCAGAGGGCAGAAATGCAGCCGGCGTCCGTTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622638 50 + 5243153 CAAAGCCTGCACTCCAGATCAGAAAGCAGAAATGAAGCAGGTGTCCG-TTT i cebCap1.NW_016107454v1 I 165 C 0 s aotNan1.NW_018509326v1 3365638 50 + 7587287 CAAAGCCTGCACTCAAGATCAGAAAGCAGAAATGAAGCAGGTGTCCG-TTT i aotNan1.NW_018509326v1 I 12 C 0 s otoGar3.GL873658 2572169 50 + 5252280 CAGTGTGTGACACTGTGACCAGAGTGTGAGAACAAAACAGGTGCCAG-TTT i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I e cerAty1.NW_012000820v1 3407440 919 - 10304083 I a score=85920.000000 s hg38.chr2_KI270769v1_alt 87759 7 + 120616 --TTAGCAG s panTro5.chr2A 3549854 7 + 111504155 --TTAGCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410486 7 + 114371477 --TTAGCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288298 7 + 637652 --TTAGCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085565 7 + 81552678 --TTAGCAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348609 7 + 108979918 --TTAGCAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059443 7 - 111193037 --TTAGCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3451956 7 + 3644372 --TTAGCAG i macNem1.NW_012011978v1 C 0 I 128 s cerAty1.NW_012000820v1 3408359 7 - 10304083 --TTAGCAG i cerAty1.NW_012000820v1 I 919 C 0 s chlSab2.chr14 3509107 7 - 107702431 --TTAGCAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040461 7 + 1565135 --TTAGCAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403959 7 - 13651311 --TTAGCAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492411 7 - 108792865 --TTAGCAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136589 7 - 7082604 --TTAGCAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622688 7 + 5243153 --TTAGCAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3365688 7 + 7587287 --TTAGCAG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2572219 9 + 5252280 TCTTATCAG i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I a score=212570.000000 s hg38.chr2_KI270769v1_alt 87766 25 + 120616 GAAGTCA-TTTAGGTGAAGTTACTCT s panTro5.chr2A 3549861 25 + 111504155 GAAGTCA-TTTAGGTGAAGTTACTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410493 25 + 114371477 GAAGTCA-TTTAGGTGAAGTTACTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288305 25 + 637652 GAAGTCA-TTTAGGTGAAGTTACTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085572 25 + 81552678 GAAGTCA-TTTAGGTGAAGTTACTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348616 25 + 108979918 GAAGTCA-TTTAGGTGAAGTTACTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059450 25 - 111193037 GAAGTCA-TTTAGGTGAAGTTACTCT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3408366 25 - 10304083 GAAGTCA-TTTAGGTGAAGTTACTCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509114 25 - 107702431 GAAGTCA-TTTAGGTGAAGTTACTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040468 25 + 1565135 GAAGTCA-TTTAGGTGAAGTTACTCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403966 25 - 13651311 GACGTCA-TTTAGGTGAAGTTACTCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492418 25 - 108792865 GACGCCA-TTTAGGTGAACTTACTCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136596 21 - 7082604 GAAGTCA-TCTAGGTGAACTGA---- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622695 25 + 5243153 GAAGTCA-TTTAGGTGAACTTACTGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3365695 25 + 7587287 GAAGTCA-TTTAGGTGAACTTACTCT i aotNan1.NW_018509326v1 C 0 I 22 s otoGar3.GL873658 2572228 26 + 5252280 GACATAATTTTAGGTCAAGTTCCTAT i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I e macNem1.NW_012011978v1 3451963 128 + 3644372 I a score=-1540.000000 s hg38.chr2_KI270769v1_alt 87791 3 + 120616 A-TC s panTro5.chr2A 3549886 3 + 111504155 A-TC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410518 3 + 114371477 A-TC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288330 3 + 637652 A-TC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085597 3 + 81552678 A-TC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348641 4 + 108979918 ATTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059475 4 - 111193037 ATTC i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3408391 4 - 10304083 ATTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509139 4 - 107702431 ATTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040493 4 + 1565135 ATTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403991 4 - 13651311 ATTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492443 3 - 108792865 -ATC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136617 1 - 7082604 ---C i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622720 3 + 5243153 -ATC i cebCap1.NW_016107454v1 C 0 I 11 s otoGar3.GL873658 2572254 3 + 5252280 -GTC i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I e aotNan1.NW_018509326v1 3365720 22 + 7587287 I e macNem1.NW_012011978v1 3451963 128 + 3644372 I a score=39083.000000 s hg38.chr2_KI270769v1_alt 87794 6 + 120616 TCAATT s panTro5.chr2A 3549889 6 + 111504155 TCAATT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410521 6 + 114371477 TCAATT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288333 6 + 637652 TCAATT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085600 6 + 81552678 TCAATT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348645 6 + 108979918 TCAACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059479 6 - 111193037 TCAACT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3408395 6 - 10304083 TCAACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509143 6 - 107702431 TCAACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040497 6 + 1565135 TCAACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3403995 6 - 13651311 TCAACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492446 6 - 108792865 TCAGTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136618 6 - 7082604 TCAGTT i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2572257 6 + 5252280 TAAATT i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I e cebCap1.NW_016107454v1 622723 11 + 5243153 I e aotNan1.NW_018509326v1 3365720 22 + 7587287 I e macNem1.NW_012011978v1 3451963 128 + 3644372 I a score=75026.000000 s hg38.chr2_KI270769v1_alt 87800 15 + 120616 ---AACAAAAACTAGAGT s panTro5.chr2A 3549895 15 + 111504155 ---AATAAAAACTAGAGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410527 15 + 114371477 ---AATAAAAACTAGAGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288339 15 + 637652 ---AACAAAAACTAGAGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085606 15 + 81552678 ---AATAAAAACTAGAGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348651 15 + 108979918 ---AATAAAACCCAGAGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059485 15 - 111193037 ---AATAAAACCCAGAGT i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3408401 15 - 10304083 ---AATAAAACCTAGAGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509149 15 - 107702431 ---AATAAAACCCAGAGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040503 15 + 1565135 ---AATAAAACCTAGAGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404001 15 - 13651311 ---AATAAAACCCAGAGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492452 15 - 108792865 ---AATCGAAACTAGAGT i calJac3.chr14 C 0 C 0 s otoGar3.GL873658 2572263 17 + 5252280 AATAAAAAAAACTGAgg- i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e saiBol1.JH378218 3136624 0 - 7082604 C e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I e cebCap1.NW_016107454v1 622723 11 + 5243153 I e aotNan1.NW_018509326v1 3365720 22 + 7587287 I e macNem1.NW_012011978v1 3451963 128 + 3644372 I a score=453115.000000 s hg38.chr2_KI270769v1_alt 87815 96 + 120616 GGCTTggccgggtgcagtggctcatgcctgtaatctcagcact---ttgggaagctgaggcacgtagatcacttgaggtcaggagtttgaggccagcct s panTro5.chr2A 3549910 96 + 111504155 GGCTTggccgggtgcagtggctcatgcctgtaatctcagcact---ttgggaggctgaggcaggtagatcacttgaggtcaggagtttaagaccagccc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410542 96 + 114371477 GGCTTggccgggtgcagtggctcatgcctgtaatctcagcact---ttgggaggctgaggcaggtagatcacttgaggtcaggagtttaagaccagcct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288354 96 + 637652 GGCTTggccgggtgcagtggctcatgcctgtaatctcagcact---ttgggaggctgaggcaggtagatcacctgaggtcaggagtttgaggccagcct i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085621 96 + 81552678 GGCTTggccgggcgcagtggctcatgcctgtaatctcagcact---ttgggaggctgaggcgggtagatcacttgaggtcaggagtttgagaccagcct i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348666 96 + 108979918 GGCTTggccgggcacagtggctcacgcctgtaatcccagcact---ttgggaggccgaggcgggtggatcacttgaggtcaggtattcgagaccagcct i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059500 96 - 111193037 GGCTTggccgggcacagtggctcacgcctgtaatcccagcact---ttgggaggccgaggcgggtggatcacttgaggtcaggtattcgagaccagcct i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3408416 96 - 10304083 GGCTTggccaggcacagtggctcacgcctgtaatcccagcact---ttgggaggccgaggcgggtggatcacttgaggtcaggtgttcgagaccagcct i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509164 96 - 107702431 GGCTTggccaggtgcagtggctcacgcctgtaatcccagcact---ttgggaggccgaggcgggtggatcacttgaggtcaggagttcaagaccagcct i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040518 96 + 1565135 GGCTTggccgggcacagtggctcacacctgtaatcccagcact---ttgggaggccgaggcgggtggatcacttgaggtcaggtgttcgagaccagcct i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404016 96 - 13651311 GGCTTggccgggcgcagtggctcacgcctgtaatcccagcact---ttgggaggccgaggcgggtggatcacttgaggtcaggagttcgagaccagcct i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2572280 70 + 5252280 -gccttgcct------atggctca-----gtgagtagggcactggccccatataccgagggtggcgg-----------------gtttaaacccagccc i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e saiBol1.JH378218 3136624 0 - 7082604 C e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I e cebCap1.NW_016107454v1 622723 11 + 5243153 I e aotNan1.NW_018509326v1 3365720 22 + 7587287 I e calJac3.chr14 3492467 0 - 108792865 C e macNem1.NW_012011978v1 3451963 128 + 3644372 I a score=806194.000000 s hg38.chr2_KI270769v1_alt 87911 139 + 120616 -ggccaacatggtgaaaccccatctctactaaaaatac-aaaaaattagccaggcgtggtggcagtcgcctgtaatcccagctacttgggaggctgaggcaggagagttgcttgaatccaggaggcggaggttgcggtgag s panTro5.chr2A 3550006 139 + 111504155 -agccaacatggtgaaaccccatctctactaaaaatac-aaaaaatcagccaggcgtggtggcatgcgcctgtagtcccagctacttgggaggctgaggcaggagagttgcttgaatccaggaggcggaggttgcggtgag i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410638 139 + 114371477 -ggccaacatggtgaaaccccatctctactaaaaatac-aaaaaattagccaggcgtggtggcagtcgcctgtaatcccagctacttgggaggctgaggcaggagagttgcttgaatccaggaggcggaggttgcagtgag i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288450 139 + 637652 -ggccaacatggtgaaaccccatctctactaaaaatac-aaaaaattagccaggcgtggtggcagtcgcctgtaatcccagctacttgggaggctgaggcaggagagttgcttgaatccaggaggcggaggttgcggtgag i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085717 139 + 81552678 -ggccaacatggtgaaaccccgtctctactaaaaatac-aaaatattagccgggcatggtggcagtcgcctgtaatcccagctacttgggaggctgaggcaggaaaatcgcttgaatccaggaggtggaggttgccgtgag i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3348762 140 + 108979918 -ggccaacatggtgaaaccctctctctactaaaaatacaaaaaaattagctaggcgtggtggcgggcgcctgtaatcccagctacttgggagactgaggcaggagactcgcttgaacctgggaagcggaggttgtagtgag i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059596 140 - 111193037 -ggccaacatggtgaaaccctctctctactaaaaatacaaaaaaattagctaggcgtggtggcgggcgcctgtaatcccagctacttgggagactgaggcaggagactcgcttgaacctgggaagcggaggttgtagtgag i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452091 139 + 3644372 -ggccaacatgg-gaaaccctctctctactaaaaatacaaaaaaattagctaggcatggtggcgggcgcctgtaatcccagctacttgggagactgaggcaggagactcgcttgaacctgggaagcggaggttgtagtgag i macNem1.NW_012011978v1 I 128 C 0 s cerAty1.NW_012000820v1 3408512 140 - 10304083 -ggccaacatggtgaaaccctatctctactaaaaatacaaaaaaattagctaggcatggtggcgggtgcctgtaatcccagctacttgggagactgaggcaggagactcgcttgaacctgggaagcggagattgtagtgag i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509260 140 - 107702431 -ggccaacatggtgaaaccctgtctctactaaaaatacaaaaaaattagctaggcatggtggtgggcacctgtaatcccagctacttgggagactgaggcaggagactcactttaacctgggaagcggaggttgtaatgac i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040614 140 + 1565135 -ggccaacatggtgaaaccctatctctactaaaaatacaaaaaaattagctaggcatggtggcgggcgcctgtaatcccagctacttgggagactgaggcaggagactcgcttgaacctgggaagcggaggttgtagtgag i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404112 140 - 13651311 -ggccaacatggtgaaaccctatctctactaaaaacacaaaaaaattagctaggcctagcggtgggcgcctgtaatcccagctacttgggagactgaggcaggagactcgcttgaacctgggaagcggaggttgtagtgag i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2572350 117 + 5252280 cagccaa--------------------actgcaac----aaaaaaatagctgagtgttgtggcaggcacctgtagtcccagctactccggaggctgaggcaagagaatcgcataagcctaagagctagacattgctgtgag i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e saiBol1.JH378218 3136624 0 - 7082604 C e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I e cebCap1.NW_016107454v1 622723 11 + 5243153 I e aotNan1.NW_018509326v1 3365720 22 + 7587287 I e calJac3.chr14 3492467 0 - 108792865 C a score=218234.000000 s hg38.chr2_KI270769v1_alt 88050 44 + 120616 ccgagatcgtgccactgcactacagcctgggcaacgagagcaaa s panTro5.chr2A 3550145 44 + 111504155 ccgagatcgtgccactgcactacagcctgggcaacgagagcaaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410777 44 + 114371477 ccgagatcgtgccactgcactacagcctgggcaacgagagcaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288589 44 + 637652 ctgagatcgtgctactgcactacagcctgggcaacgagagcaaa i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3348902 44 + 108979918 ccgagatcgcgccactgcactccagcctaggcaacaagagcgaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059736 44 - 111193037 ccgagatcgcgccactgcactccagcctaggcaacaagagcgaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452230 44 + 3644372 ccgagatcgcgccactgcactccagcctaggcaacaagagcgaa i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3408652 44 - 10304083 ccgagatcgcgccactgcactccagcctaggcaacaagagcgaa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509400 44 - 107702431 ccgagatcgcgccactgcactccagcctaggcaacaagagcgaa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040754 44 + 1565135 ccgagatcgcgccactgcactccagcctaggcaacaagagcgaa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404252 44 - 13651311 ccaagatcgtgccactgcactccagcctaggcaacaagagcgaa i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2572467 40 + 5252280 ctgtgat---gccatagcactctattgagggcaac-agagtaag i otoGar3.GL873658 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e saiBol1.JH378218 3136624 0 - 7082604 C e proCoq1.NW_012151163v1 984786 427 + 1238772 I e dasNov3.JH580157 611267 425 + 2232271 I e cebCap1.NW_016107454v1 622723 11 + 5243153 I e aotNan1.NW_018509326v1 3365720 22 + 7587287 I e calJac3.chr14 3492467 0 - 108792865 C e nomLeu3.chr19 3085856 0 + 81552678 C a score=84275.000000 s hg38.chr2_KI270769v1_alt 88094 23 + 120616 actccatctaaaaaataaaaata s panTro5.chr2A 3550189 23 + 111504155 actccgtctaaaaaataaaaata i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410821 23 + 114371477 actccgtctaaaaaataaaaata i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288633 23 + 637652 actccatctaaaaaataaaaata i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3348946 21 + 108979918 actccatctaaaaaattaaa--a i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059780 21 - 111193037 actccatctaaaaaataaaa--a i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452274 21 + 3644372 actccatctaaaaaataaaa--a i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3408696 21 - 10304083 actccgtctaaaaaataaaa--a i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509444 21 - 107702431 actccatctaaaaaataaaa--a i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040798 21 + 1565135 actccatctaaaaaataaaa--a i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404296 21 - 13651311 actccatctaaaaaataaaa--a i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2572507 15 + 5252280 actctgtctctaaaa-------- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 611692 14 + 2232271 ACTATGTCTAAATT--------- i dasNov3.JH580157 I 425 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e saiBol1.JH378218 3136624 0 - 7082604 C e proCoq1.NW_012151163v1 984786 427 + 1238772 I e cebCap1.NW_016107454v1 622723 11 + 5243153 I e aotNan1.NW_018509326v1 3365720 22 + 7587287 I e calJac3.chr14 3492467 0 - 108792865 C e nomLeu3.chr19 3085856 0 + 81552678 C a score=82507.000000 s hg38.chr2_KI270769v1_alt 88117 17 + 120616 aataaaaaCTAGAGTGG s panTro5.chr2A 3550212 17 + 111504155 aataaaaaCTAGAGTGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410844 17 + 114371477 aataaaaaCTAGAGTGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288656 17 + 637652 aataaaaaCTAGAGTGG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3348967 17 + 108979918 aagtaaaaCTAGAGTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059801 17 - 111193037 aagtaaaaCTAGAGTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452295 17 + 3644372 aagtaaaaCTAGAGTGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3408717 17 - 10304083 aagtaaaaCTAGAGTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509465 17 - 107702431 aagtaaaaCTAGAGTGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040819 17 + 1565135 aagtaaaaCTAGAGTGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404317 17 - 13651311 aagtaaaaCTACAGTGG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3136624 15 - 7082604 AATCAAAACGAGATT-- i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2572522 13 + 5252280 ----aaaaaCTGAGTGG i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 611706 17 + 2232271 AATAAAAGTTAGGCATA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e cebCap1.NW_016107454v1 622723 11 + 5243153 I e aotNan1.NW_018509326v1 3365720 22 + 7587287 I e calJac3.chr14 3492467 0 - 108792865 C e nomLeu3.chr19 3085856 0 + 81552678 C a score=15058.000000 s hg38.chr2_KI270769v1_alt 88134 2 + 120616 CT s panTro5.chr2A 3550229 2 + 111504155 CT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410861 2 + 114371477 CT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288673 2 + 637652 CT i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3348984 2 + 108979918 CT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059818 2 - 111193037 CT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452312 2 + 3644372 CT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3408734 2 - 10304083 CT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509482 2 - 107702431 CT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040836 2 + 1565135 CT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404334 2 - 13651311 CT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492467 2 - 108792865 CC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136639 2 - 7082604 CC i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2572535 2 + 5252280 TT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 611723 2 + 2232271 CT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e cebCap1.NW_016107454v1 622723 11 + 5243153 I e aotNan1.NW_018509326v1 3365720 22 + 7587287 I e nomLeu3.chr19 3085856 0 + 81552678 C a score=451955.000000 s hg38.chr2_KI270769v1_alt 88136 56 + 120616 TTAATGTGCGAGCCTGAATGCAAAACGCAGCT---------------CACCGCCTCTACCTGGAGATCAGG s panTro5.chr2A 3550231 56 + 111504155 TTAATGTGCGAGCCTGAATGCAAAACGCAGCT---------------CACCGCCTCTACCTGGAGATCAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410863 56 + 114371477 TTAATGTGCGAGCCTGAATGCAAAACGCAGCT---------------CACCGCCTCTACCTGGAGATCAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288675 56 + 637652 TTAATGTGCGAGCCTGAATGCAAAACGCAGCT---------------CACCGCCTCTACCTGGAGATCAGG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3348986 56 + 108979918 TTAATTTGCGAGCCTGAATGCAAAATGCAGTT---------------CACTGCCTCTGCCTGGAGATCGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059820 56 - 111193037 TTAATTTGCGAGCCTGAATGCAAAATGCAGTT---------------CACTGCCTCTGCCTGGAGATCGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452314 56 + 3644372 TTAATTTGCGAGCCTGAATGCAAAATGCAGTT---------------CACTGCCTCTGCCTGGAGATCGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3408736 56 - 10304083 TTAATTTGCGAGCCTGAATGCAAAATGCAGCT---------------CACTGCCTCCGCCTGGAGATCGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509484 56 - 107702431 TTAATTTGTGAGCCTGAATGCAAAATGCAGCT---------------CACTGCCTGTGCCTGGAGATCGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040838 56 + 1565135 TTAATTTGCGAGCCTGAATGCAAAATGCAGTT---------------CACTGCCTCTGCCTGGAGATCGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404336 56 - 13651311 TTAATTTGCGAGCCTGAATGCAAAATGCAGCT---------------CACTGCCTCTGCCTGGAGATCAGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492469 51 - 108792865 TTAATTTGTAAGCCTGAATGCAAAATGCAGCT--------------------CATCAGCCTGCAGACCAGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136641 56 - 7082604 TCAGTTTGCAAGCCCGAGTGCAGAACGCAGCT---------------CTCTACCTCTGCCTGCAGACCCGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622734 56 + 5243153 TTAATTTGCAAACCTGAATACAAAATGCAGCT---------------CACCATCTCTGCCTGGAGACCTGG i cebCap1.NW_016107454v1 I 11 C 0 s aotNan1.NW_018509326v1 3365742 56 + 7587287 TTAATTTGCAAGCCCGAATGCAAAATGCAGCT---------------CACCACCTCTGCCTGGGGACCAGG i aotNan1.NW_018509326v1 I 22 C 0 s otoGar3.GL873658 2572537 17 + 5252280 TTAATTTGCT------------------------------------------------------GACCAGA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 611725 71 + 2232271 TTAATGCGCTAGCCAGAATGTATGATATGGTTCAATCAACTAAATGTCACCACCTCCATCTGGAAAGCATT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e canFam3.chr17 2071691 101 + 64289059 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e nomLeu3.chr19 3085856 0 + 81552678 C a score=399860.000000 s hg38.chr2_KI270769v1_alt 88192 48 + 120616 -AACCCCGGGCCACACAGG-GCCATACGCTG----------------------GGTCTCTGTGGGATCCAAA s panTro5.chr2A 3550287 48 + 111504155 -AACCCCGGGCCACGCAGG-GCCATACGCTG----------------------GGTCTCTGTGGGATCCAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410919 48 + 114371477 -AACCCCAGGCCACGCAGG-GCCATACGCTG----------------------GGTCTCTGTGGGATCCAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288731 48 + 637652 -AACCCCGGGCCACGCAGG-GCCATACGCTG----------------------GGTCTCTGTGGGATCCAAA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3349042 48 + 108979918 -AACCCCAGGCCACGCAGG-GTCACACATTG----------------------GGTCTGTGTGGTGTCCAGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059876 48 - 111193037 -AACCCCAGGCCACGCAGG-GTCACACATTG----------------------GGTCTGTGTGGTGTCCAGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452370 48 + 3644372 -AACCCCAGGCCACGCAGG-GTCACACATTG----------------------GGTCTGTGTGGTGTCCAGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3408792 48 - 10304083 -AACCCCAGGCCACGCAGG-GTCACACACTG----------------------GGTCTGTGTGGTGTCCAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509540 48 - 107702431 -AACCCCAGGCCACGCAGG-GTCACACACTG----------------------GGTCTGTGTGGTGTCCAAA i chlSab2.chr14 C 0 I 319 s manLeu1.NW_012104432v1 1040894 48 + 1565135 -AACCCCAGGCCACGCAGG-GTCACACATTG----------------------GGTCTGTGTGGTGTCCAGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404392 48 - 13651311 -AACCCCAGGCCACACAGG-GTCACATATTG----------------------GGTCTGTGTGGTGCCCAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492520 48 - 108792865 -AACCCCAGGCCATGCAGG-GTCACACGCTG----------------------GGTCTGTGCAGTGTCCAGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136697 48 - 7082604 -GACCCCAGGCCACGCGGG-GTCACACGCGG----------------------GGTCTGTGCGGCGTCCAGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622790 48 + 5243153 -AACCCCAGGCCACGCAGG-GTCACACGCTG----------------------GGTCTGTGTGGTGTCCAGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3365798 48 + 7587287 -AACCCCAGGCCACGCAGG-GTCACACACTG----------------------GGTCTGTGCAGTGTCCAGA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2572554 39 + 5252280 -GAGTTTAGGCAGCGAATGCATCA------G----------------------GGCCAGTGTGGCCTG---- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2071792 43 + 64289059 -AGCACCAGGCTGCTCAGG-ATTATGCAGGG----------------------GGCAGATGGGGCAT----- i canFam3.chr17 I 101 C 0 s dasNov3.JH580157 611796 71 + 2232271 AACACCCAGACTACTCAGA-ATTACACTTGGAAGAGCAAATGTCAAATGTTCAGATCTTTGCAATTTTTTAA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e nomLeu3.chr19 3085856 0 + 81552678 C a score=35183.000000 s hg38.chr2_KI270769v1_alt 88240 3 + 120616 GCC s panTro5.chr2A 3550335 3 + 111504155 GCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410967 3 + 114371477 GCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288779 3 + 637652 GCC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3349090 3 + 108979918 GCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059924 3 - 111193037 GCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452418 3 + 3644372 GCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3408840 3 - 10304083 GCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509907 3 - 107702431 GCC i chlSab2.chr14 I 319 C 0 s manLeu1.NW_012104432v1 1040942 3 + 1565135 GCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404440 3 - 13651311 GCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492568 3 - 108792865 GCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136745 3 - 7082604 GCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622838 3 + 5243153 GCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3365846 3 + 7587287 GCC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2572593 1 + 5252280 --T i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2071835 3 + 64289059 GTT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 611867 3 + 2232271 GCC i dasNov3.JH580157 C 0 I 2 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I e nomLeu3.chr19 3085856 0 + 81552678 C a score=309606.000000 s hg38.chr2_KI270769v1_alt 88243 29 + 120616 CCTGTGGGTTGTGTTGGG---GGACAGCAGCT s panTro5.chr2A 3550338 29 + 111504155 CCTGTGGGTTGTGTTGGG---GGACAGCAGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410970 29 + 114371477 CCTGTGGGTTGTGTTGGG---GGACAGCAGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288782 29 + 637652 CCTGTGGGTTGTGTTGGG---GGACAGCAGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085856 29 + 81552678 ccTGTGGGTTGTGTTGGG---GGACAGCAGCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3349093 29 + 108979918 CCTGTGGGTTTTGCTGGG---GGACAGCAGCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059927 29 - 111193037 CCTGTGGGTTTTGCTGGG---GGACAGCAGCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452421 29 + 3644372 CCTGTGGGTTTTGCTGGG---GGACAGCAGCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3408843 29 - 10304083 CCTGTGGGTTTTGTTGGG---GGACAGCAGCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509910 29 - 107702431 CCTGTGGGTTTTGTTGGG---GGACAGCAGCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040945 29 + 1565135 CCTGTGGGTTTTGTTGGG---GGACAGCAGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404443 29 - 13651311 CCTGTGGGTTTTGTTGGG---GGACAGCAGCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492571 29 - 108792865 CCTGAGGGTTTTGCTGGG---GGACAGCAGCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136748 29 - 7082604 CCTGTGGGTCTTGCTGGG---GGACAGCAGCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622841 29 + 5243153 CCTGTGGGTTTTGCTGGG---GGACAGCAGCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3365849 29 + 7587287 CCTGTGGGTTTTGCTGGG---GTACAGTGGCT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2572594 32 + 5252280 CCTGTGCAATGGGGTGAGCTTGTACTCCAGTG i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2071838 24 + 64289059 CCTGTCCCTGCCACCTGG---GGA-----GCT i canFam3.chr17 C 0 I 2 s dasNov3.JH580157 611872 29 + 2232271 CCTGTCAGTTTTGTTGGT---ATGCACTAGCA i dasNov3.JH580157 I 2 C 0 e micMur3.chr8 2672980 461 - 159902609 I e mm10.chr12 91436540 590 - 120129022 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I a score=325647.000000 s hg38.chr2_KI270769v1_alt 88272 33 + 120616 -CCTGGGCTTTCCC-CGCTAACTGCCAC---CGTTGCT s panTro5.chr2A 3550367 33 + 111504155 -CCTGGGCTTTCCC-CGCTAACTGCCAC---CGTTGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3410999 33 + 114371477 -CCTGGGCTTTCCC-CGCTAACTGCCAC---CGTTGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288811 33 + 637652 -CCTGGGCTTTCCC-CGCTAACTGCCAC---CGTTGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085885 32 + 81552678 -CCTGGGC-TTCCC-CGCTAACTGCCGC---CGTTGCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3349122 33 + 108979918 -CCTGGGCTTTCCC-CACTGACTGGCAC---CGTCGCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059956 33 - 111193037 -CCTGGGCTTTCCC-CACTGACTGCCAC---CGTCGCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452450 33 + 3644372 -CCTGGGCTTTCCC-CACTGACTGCCAC---CGTCGCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3408872 33 - 10304083 -CCTGGGCTTTCCC-CACTGACTGCCAC---CGTCGCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509939 33 - 107702431 -CCTGGGGTTTCCC-CACTGCCTGCCAC---CGTTGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1040974 33 + 1565135 -CCTGGGCTTTCCC-CACTGACTGCCAC---CGTCGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404472 33 - 13651311 -CCTGGGGTTTCCC-CCCTGACTGCCAC---CATTGCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492600 33 - 108792865 -CCTGGGCCTTCCC-CGCTAACTGCCAC---TGTCGCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136777 33 - 7082604 -CCTGGGCCTTCCC-CGCTAACCGCCAC---CGTCGCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622870 33 + 5243153 -CATAGGCCTTCCC-CGCTAACTGCCAC---CGTCGCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3365878 33 + 7587287 -TCTGGGCCTTCCC-TGCTAACTGCCAT---CATCACC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2572626 26 + 5252280 -TCCTGGTTGCCCC-C-------GTCAT---CATTCCC i otoGar3.GL873658 C 0 I 6 s mm10.chr12 91437130 34 - 120129022 -CCTTGGCTCTCCTGTGCTCACTGCCTT---CTCTGCT i mm10.chr12 I 590 C 0 s canFam3.chr17 2071864 31 + 64289059 -CCT--GCCCCTCT-GGTTAACTGTTTA---CCTGTCT i canFam3.chr17 I 2 I 2 s dasNov3.JH580157 611901 37 + 2232271 TCTTGACTTTTCCT-GGTTAACTGCTTTATATGTCACT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2672980 461 - 159902609 I e proCoq1.NW_012151163v1 984786 427 + 1238772 I a score=1267212.000000 s hg38.chr2_KI270769v1_alt 88305 68 + 120616 TGTG---TTACAGCGCGTTCCTTCACCTCGGGCAGAATAACTTTGCAGAAGCCCACAGGTTCTTCACAGAG s panTro5.chr2A 3550400 68 + 111504155 TGTG---TTACAGCGCGTTCCTTCACCTCGGGCAGAATAACTTCGCAGAAGCCCACAGGTTCTTCACAGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3411032 68 + 114371477 TGTG---TTACAGCGCGTTCCTTCACCTCGGGCAGAATAACTTCGCAGAAGCCCACAGGTTCTTCACAGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288844 68 + 637652 TGTG---TTACAGCGCGTTCCTTCACCTCGGGCAGAATAACTTTGCAGAAGCCCACAGGTTCTTCACAGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085917 68 + 81552678 TGTG---TTACAGAGCATTCCTTCACCTCGGGCAGAACAACTTTGCAGAAGCCCACAGGTTCTTCACAGAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3349155 68 + 108979918 TGTG---TTCCAGAGCATTCCTTCACCTCGGGCAGAATAACTTTGCAGAAGCCCACAGGTTCTTCACAGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5059989 68 - 111193037 TGTG---TTCCAGAGCGTTCCTTCACCTCGGGCAGAATAACTTTGCAGAAGCCCACAGGTTCTTCACAGAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452483 68 + 3644372 TGTG---TTCCAGAGCGTTCCTTCACCTCGGGCAGAATAACTTTGCAGAAGCCCACAGGTTCTTCACAGAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3408905 68 - 10304083 TGTG---TTCCAGAGCGTTCCTTCACCTCGGGCAGAATAACTTTGCAGAAGCCCACAGGTTCTTCACAGAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3509972 68 - 107702431 TGTG---TTACAGAGCGTTCCTTCACCTCGGGCAGAACAACTTTGCAGAAGCCCACAGGTTCTTCACAGAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1041007 68 + 1565135 TGTG---TTCCAGAGCGTTCCTTCACCTCGGGCAGAATAACTTTGCAGAAGCCCACAGGTTCTTCACAGAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404505 68 - 13651311 TGTG---TTACAGAGCGTTCCTTCACCTCGGGCAGAATAACTTTGCAGAAGCCCACAGGTTCTTCACAGAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492633 68 - 108792865 TGTG---TTACAGAGCATTCCTTTACCTCGGGCAGAATAACTTCGCGGAAGCCCACCGGTTCTTCACGGAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136810 68 - 7082604 TGTG---TTACAGAGCGTTCCTTTACCTCGGGCAGAATAACTTCGCCGAAGCCCACCGGTTCTTCACAGAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622903 68 + 5243153 TGTG---TTACAGAGCGTTCCTTTACCTCGGGCAGAATAACTTCGCGGAAGCCCACCGGTTCTTCACGGAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3365911 68 + 7587287 TGTG---TTACAGAGCGTTCCTTTACCTCGGGCAGAATAACTTCGCGGAAGCCCACCGGTTCTTCACGGAG i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2673441 68 - 159902609 TGTG---TTGCAGAGCCTTCCTCCACCTCGGGCAGAACAACTTCGCGGAAGCCCACAGGTTCTTCACGGAG i micMur3.chr8 I 461 I 235 s proCoq1.NW_012151163v1 985213 68 + 1238772 TGTG---TTGCAGAGCGTTCCTCCACCTCGGGCAGAACAACTTCGCCGAAGCCCACAGGTTCTTCACCGAG i proCoq1.NW_012151163v1 I 427 C 0 s otoGar3.GL873658 2572658 68 + 5252280 TGTG---TTTCAGAGCTTTCCTGCACCTGGGGCAGAACAACTTTGCAGAAGCCCACAGATTCTTCACGGAG i otoGar3.GL873658 I 6 C 0 s mm10.chr12 91437164 70 - 120129022 -GTGTTCTTCCAGAGCCTTTCTGTACCTTGGCCAGAATAACTTCGCAGAAGCTCACAAGTTCTTCACAGAG i mm10.chr12 C 0 C 0 s canFam3.chr17 2071897 68 + 64289059 TATG---TTCCAGAGCTTTCCTTCACCTTGGTCAGAATAACTTTGCAGAAGCCCACAGATTCTTCACAGAA i canFam3.chr17 I 2 C 0 s dasNov3.JH580157 611938 68 + 2232271 TATA---CTACAGAGCTTTCCTTCACCTCGGTCAGAATAACTTTGCAGAAGCACACAAATTCTTCACAGAA i dasNov3.JH580157 C 0 C 0 a score=52119.000000 s hg38.chr2_KI270769v1_alt 88373 3 + 120616 ATC s panTro5.chr2A 3550468 3 + 111504155 ATC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3411100 3 + 114371477 ATC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288912 3 + 637652 ATC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085985 3 + 81552678 ATC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3349223 3 + 108979918 ATC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5060057 3 - 111193037 ATC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452551 3 + 3644372 ATC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3408973 3 - 10304083 ATC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3510040 3 - 107702431 ATC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1041075 3 + 1565135 ATC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404573 3 - 13651311 ATC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492701 3 - 108792865 ATC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136878 3 - 7082604 ATC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622971 3 + 5243153 ATC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3365979 3 + 7587287 ATC i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 985281 3 + 1238772 ATC i proCoq1.NW_012151163v1 C 0 I 242 s otoGar3.GL873658 2572726 3 + 5252280 ATT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91437234 3 - 120129022 ATT i mm10.chr12 C 0 C 0 s canFam3.chr17 2071965 3 + 64289059 ATC i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 612006 3 + 2232271 ATT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2673509 235 - 159902609 I a score=504465.000000 s hg38.chr2_KI270769v1_alt 88376 33 + 120616 TTAAGGATGGATCCAAGAAACGCAGTGGTAAGA s panTro5.chr2A 3550471 33 + 111504155 TTAAGGATGGATCCAACAAACGCAGTGGTAAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3411103 33 + 114371477 TTAAGGATGGATCCAACAAACGCAGTGGTAAGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288915 33 + 637652 TTAAGGATGGATCCAACAAACGCAGTGGTAAGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3085988 33 + 81552678 CTAAGGATGGACCCAGCAAACGCCGTGGTAAGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3349226 33 + 108979918 TTAAGGATGGATCCAACAAACGCAGTGGTAAGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5060060 33 - 111193037 TTAAGGATGGATCCAACAAACGCAGTGGTAAGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452554 33 + 3644372 TTAAGGATGGATCCAACAAACGCAGTGGTAAGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3408976 33 - 10304083 TTAAGGATGGATCCAACAAACGCAGTGGTAAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3510043 33 - 107702431 TTAAGGATGGATCCAACAAATGCAGTGGTAAGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1041078 33 + 1565135 TTAAGGATGGATCCAACAAACGCAGTGGTAAGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404576 33 - 13651311 TTAAGGATGGATCCAACAAACGCAGTGGTAAGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492704 33 - 108792865 TTAAGGATGGATCCAGCAAACGCAGTGGTAAGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136881 33 - 7082604 TTAAGGCTGGATCCCGCGAACGCAGTGGTAAGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 622974 33 + 5243153 TTAAGGATGGATCCAGCAAACGCAGTGGTAAGA i cebCap1.NW_016107454v1 C 0 I 14 s aotNan1.NW_018509326v1 3365982 33 + 7587287 TTAAGGATGGATCCAGCAAACGCAGTGGTAAGA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2572729 33 + 5252280 CTGAGGCTGGACCCCACAAACACAGTGGTAAGA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91437237 33 - 120129022 TTGAGAATGGACCCAACAAATGCAGTGGTAAGA i mm10.chr12 C 0 C 0 s canFam3.chr17 2071968 33 + 64289059 CTCAAGATTGACCCAACAAATGCGGTGGTAAGG i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 612009 33 + 2232271 TTAAGGATTGAACCAACAAATGCAGTGGTAAGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2673509 235 - 159902609 I e proCoq1.NW_012151163v1 985284 242 + 1238772 I a score=74276.000000 s hg38.chr2_KI270769v1_alt 88409 17 + 120616 TCCCCA--------------AGCTG-CAGGAT------------------ s panTro5.chr2A 3550504 17 + 111504155 TCCCCA--------------AGCTG-CAGGAT------------------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3411136 17 + 114371477 TCCCCA--------------AGCTG-CAGGAT------------------ i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288948 17 + 637652 TCCCCA--------------AGCTG-CAGGAT------------------ i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3086021 16 + 81552678 TCCCCA--------------AGCTG-CA-GCT------------------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3349259 17 + 108979918 TCCCCA--------------AGCCG-CAGGAT------------------ i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5060093 17 - 111193037 TCCCCA--------------AGCCG-CAGGAT------------------ i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452587 17 + 3644372 TCCCCA--------------AGCCG-CAGGAT------------------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3409009 17 - 10304083 TCCCCA--------------AGCCG-CAGGAC------------------ i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3510076 17 - 107702431 TCCCCC--------------AGCCG-CAGGAT------------------ i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1041111 17 + 1565135 TCCCCA--------------AGCCG-CAGGAT------------------ i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404609 17 - 13651311 TCCCCA--------------AGCCG-CAGGAC------------------ i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492737 15 - 108792865 GCCCCA--------------TGCCG-CAGA-------------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136914 15 - 7082604 GCCCCA--------------CGCCG-CAGA-------------------- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3366015 15 + 7587287 GCCCCA--------------CACCG-CAGA-------------------- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2572762 30 + 5252280 -CCCCAGAGGCATGCTCAGTGACCA-CAGGGC------------------ i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91437270 14 - 120129022 ----CA--------------TGCAGACTGGGT------------------ i mm10.chr12 C 0 I 2 s canFam3.chr17 2072001 7 + 64289059 -CCCCA--------------AA---------------------------- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 612042 35 + 2232271 TACCCA--------------AGCAG-AAACACATTCGGTAGCCCTGGGGT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2673509 235 - 159902609 I e proCoq1.NW_012151163v1 985284 242 + 1238772 I e cebCap1.NW_016107454v1 623007 14 + 5243153 I a score=1182578.000000 s hg38.chr2_KI270769v1_alt 88426 153 + 120616 CCTCCA---TCCTCTGCCTTTCACAGA--CGCTAGAAACATACACCCACACACGTCTCAGCAGGGGCCTGCG--------------CTCTCTCTCTCCA-GTCCACCAGCTCCAGGCAGTGGCTGTGGCCCTTAGGGGAAGTG-----ACCCAACAGGGCCACCTAGGCTCTGCCCAG s panTro5.chr2A 3550521 153 + 111504155 CCTCCG---TCCTCTGCCTTTCACAGA--CGCTAGAAACATACACCCACACACGTCTCAGCAGGGGCCTGCG--------------CTCTCTCTCTCCA-GTCCACCAGCTCCAGGCAGTGGCCGTGGCCCTTAGGGGAAGTG-----ACCCAACAGGGCCACCTAGGCTCTGCCCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3411153 153 + 114371477 CCTCCG---TCCTTTGCCTTTCACAGA--TGCTAGAAACATACACCCACACACGTCTCAGCAGGGGCCTGCG--------------CTCTCTCTCTCCA-GTCCACCAGCTCCAGGCAGTGGCCGTGGCCCTTAGGGGAAGTG-----ACCCAACAGGGCCACCTAGGCTCTGCCCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 288965 153 + 637652 CCTCCG---TCCTCTGCCTTTCACAGA--CGCTAGAAACATACACCCACACACGTCTCAGCAGGGGCCTGCG--------------CTCTCTCTCTCCA-GTCCACCAGCTCCGGGCAGTGGCCGTGGCCCTTAGGGGAAGTG-----ACCCAACAGGGCCACCTAGGCTCTGCCCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3086037 145 + 81552678 CCTCCG---TCCTCTGCCTTTCACAGA--CGCTAGAAAC--ACACCCACACACGCCTCAGCAGGGGCCTGCG--------------------CTCTCCA-GTCCACCAGCTCCAGGCAGTGGCCGTGGCCCTTAGGGGAAGTG-----ACCCAGCGGGGCCACCCAGGCTCCGCCCAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3349276 151 + 108979918 CCTCCG---CCCTCTGCCTTTCACAGA--CGCTAGAAACATGCACCCACACACATCTCAGCGGGGGCCTGCA----------------CTCTCTCTCCA-GTCCACTGGCGCCAGGCAGCGGCCGTGGCCCTTGGGGGAAGTG-----ACCCAACAGGGCCATGTAGGCTTTGCCTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5060110 153 - 111193037 CCTCCG---CCCTCTGCCTTTCACAGA--CGCTAGAAACATGCACCCACACACATCTCAGTGGGGGCCTGCA--------------CTCTCTCTCTCCA-GTCCACTGGCGCCAGGCAGCGGCCGTGGCCCTTGGGGGAAGTG-----ACCCAACAGGGCCATGTAGGCTTTGCCTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452604 153 + 3644372 CCTCCG---CCCTCTGCCTTTCACAGA--CGCTAGAAACATGCACCCACACACATCTCAGCGGGGGCCTGCA--------------CTCTCTCTCTCCA-GTCCACTGGTGCCAGGCAGCGGCCGTGGCCCTTGGGGGAAGTG-----ACCCAACAGGGCCATCTAGGCTTTGCCTGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3409026 153 - 10304083 CCTCCG---CCCTCTGCCTTTCACAGA--CGCTAGAAACATGCACCCACACCCATCTCAGCGGGGGCCTGCA--------------CTCTCTCTCTCCA-GTCCACTGGCGCCAGGCAGCGGCCGTGGCCCTTGGGGGAAGTG-----ACCCAACGGGGCCATCTAGGCTTTGCCTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3510093 142 - 107702431 CCTCCG---CCCTCTG-------------CACTAGAAACGTGCACCCACACGCATCTCAGCGGGGGCCTGCA--------------CTCTCTCTCTCCA-GTCCACTGGCGCCAGGCAGCGGCCGTGGCCCTTGGGGGAAGTG-----ACCCAACGGGGCCATCTAGGCTTTGCCTGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1041128 149 + 1565135 CCTCCG---CCCTCTGCCTTTCACAGA--CGCTAGAAACATGCACCCACACACATCTCAGTGGGGGCCTGCG------------------CTCTCTGCA-GTCCACTGGCGCCAGGCAGCGGCCGTGGCCCTTGGGGGAAGTG-----ACCCAACAGGGCCATCTAGGCTTTGCCTGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404626 151 - 13651311 CCTCCG---CCCTCTGCCTTTCACAGA--CACTAGAAACATGCACCCACACACATCTCCGCAGGGGCCTGCA----------------CTCTCTCTCCA-GCCCACTGGCGCCAGGCAGCGGCCGTGGCCCTTGGGGGAAGTG-----ACCCAACGGGGCCATCTAGGCTTTGCCTGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492752 161 - 108792865 CCCCCG---CCCTCCACCTGTCACAGA--CACCAGAAGCATGCACC--CACACGTCTCACCAGGGGCCTGCGTGCCTGTGCACA----CAAACTCTCCA-GTCCACCGGCGCCAGGCAGTGGCCATGGCTACTGGGGGACGTG-----ACCCAGCCGGGCCACCTGTGCTCTGCCCCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3136929 107 - 7082604 -CTCTG---CCCTCTGCCCGT------------AGAAACACGCACCCACACACGTGTCAGCAGGGGCCCG----------------------CTCTCCA----------------------------GCCGCTGGGGGACGTG-----ACCCAGCGGGGCCGCCTGAGCTCTGCCCGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 623021 163 + 5243153 CCCCCG---CCCTCTGCCTGTCACAGA--CACCAGAAACATGCACC--CACACGTCTCAGCAGGGGCCTGCGGGCTTGTGCACA--CTCTCGCTTTCCA-GTCCACTGGCGCCAGGCAGTGGCCATGGCCACTGGGGTACCTG-----ACCCAGCGGGACCGCCTGCGCTGTGCCCGA i cebCap1.NW_016107454v1 I 14 C 0 s aotNan1.NW_018509326v1 3366030 167 + 7587287 CCCCCG---CCCTCTGCCTGTCACAGA--CACCAGAAACATGCACCCACACACGTCTCAGCAGGGGCCTGCGGGCCTGTGCACACTCTCTCTCTCTCCA-GTCCACCGGCGCCAGTCAGTGGCCATGGCCACTGGGGGACGTG-----ACCCAGCGGGGCCGCCTGTGCTCTGCCCGA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2572792 131 + 5252280 -CCTCA---CCATCCCCATTTTGCAGG--TGCTAGAAACAGACACGGAAATGCA------------CCTGCG----------------GCCTCCCTGTG-GCCCACAGGC-TCAGGCAGCTGCAGTG----CTGGCTGGGTTG-----ACCGCACGGGGCAG--GGGTGTCTGCTGAC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91437286 105 - 120129022 CCCACGGGCCCCTCTACCTTTTGCTGA----CCAGTAAT---------CCCAGACTCCTGCTctggcctggc---------------------------------ctggc-ctgggc--------tggcctTTAAAG------------------AGGTCCACAAAGGGTCTGGTGAG i mm10.chr12 I 2 I 24 s canFam3.chr17 2072008 88 + 64289059 ------------------------AGA---GCCAGGAGCGCACACC---------------GTGAGCCTGTC--------------CTGTGTCCATCCT-----------------CATCAGTCCTGGCAGGCGTGGGAGGGT-----TTCCGACAGAGCCAGCCA------------ i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 612077 157 + 2232271 CCTCCG---CCTTGTGCATTTCACAGAGATTCTAGAAA-GTACACTAAAACAAAATACAGT-GTCACCTGCT----------------GGCCTTCTGCAGGTCCACCGGCCTCAGACAGTTGTAGCGGTTGTTGGGGGGAGGATTTCCAAGCAGCGGGCCTGTGTCACCTCCACACAG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2673509 235 - 159902609 I e proCoq1.NW_012151163v1 985284 242 + 1238772 I a score=377825.000000 s hg38.chr2_KI270769v1_alt 88579 51 + 120616 -CAGCTCTGCACCAC------CCCC-AGGCCCCTA--ACACGGCCCAGCACGCAGCCTGGA- s panTro5.chr2A 3550674 51 + 111504155 -CAGCTCTGCACCAC------CCCC-AGGCCCCTA--ACACGGCCCAGCACACAGCCTGGA- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3411306 51 + 114371477 -CAGCTCTGCACCAC------CCCC-AGGCCCCTA--ACACGGCCCAGCACGCAGCCTGGA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 289118 53 + 637652 -CAGCTCTGCACCAC------CCCC-AGGCCCCTAACACACGGCCCAGCACGCAGCCTGGA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3086182 53 + 81552678 -CAGCTCTGCACCAC------CCGC-AGGCCCCTAACACAGGGCCCAGCACGCAGCCTGGA- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3349427 54 + 108979918 -CAGCTCTGAGTCAC------CCCCTAGACCCCCAACACAGGGCCCAGCACGCAGCCTGGA- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5060263 54 - 111193037 -CAGCTCTGCGTCAC------CCCCTAGACCCCCAACACAGGGCCCAGCACGCAGCCTGGA- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452757 54 + 3644372 -CAGCTCTGCGTCAC------CCCCTAGACCCCCAACACAGGGCCCAGCACGCAGCCTGGA- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3409179 54 - 10304083 -CAGCTCTGCGTCAC------CCCCTAGACCCCCAACACAGGGCCCAGCACGCAGCCTGGA- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3510235 54 - 107702431 -CAGCTCTGCATCAC------CCCCCAGACCCCCAACACAGGGCCCAGCACGCAGCCTGGC- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1041277 54 + 1565135 -CAGCTCTGCGTCAC------CCCCTAGACCCCCAACACAGGGCCCAGCACGCAGCCTGGA- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404777 54 - 13651311 -CAGCTCTGCATCAC------CCCCCAGGCCCCCAACACAGGGCCCAGCACGCAGCCTGGA- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492913 53 - 108792865 -CAGCTTTGCGCCAC------CTGC-AGACCCCCGACACAGGGCCCAGCACAAAGCCTGGA- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3137036 44 - 7082604 -CAGCTCTGCGCCAC------CTCC-AGA---CCGACACGG------GCCCGCAGCCGGGA- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 623184 48 + 5243153 -TA-----GCGCCAC------CTCC-AGACCCCTGACACAGGGCCCAGCATGCAGCCTGGA- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3366197 53 + 7587287 -CAGCTCTGCGCCAC------CTGC-AGACCCCCGACACAGGGCCCAGCACAAAGCCTGGA- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2572923 18 + 5252280 -CAACCGTGC----------------AGCCCCTCA--------------------------- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2072096 36 + 64289059 ------CAGCCACGC------CCAC-TGCCCCTCA-----------TGCACGCAACCAGG-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 612234 61 + 2232271 CCGTCCTCACCCCACAGAGAACAGC-AGTCCTGAAGCTTTGGGCCCAGGACTCAATTCGGGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2673509 235 - 159902609 I e mm10.chr12 91437391 24 - 120129022 I e proCoq1.NW_012151163v1 985284 242 + 1238772 I a score=350737.000000 s hg38.chr2_KI270769v1_alt 88630 52 + 120616 ----ATGGGCGGGCGTCTGTCCTG-------GTT-------------------------GTGTGGGC-CAACCCTGGGCGTGTGCTCCT s panTro5.chr2A 3550725 52 + 111504155 ----ATGGGCGGGCGTCTGTCCTG-------GTT-------------------------GTGTGGGC-CGACCCTGGGCGTGTGCTCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3411357 52 + 114371477 ----ATGGGCGGGCGTCTGTCCTG-------GTT-------------------------GTGTGGGC-CGACCCTGGGCGTGTGCTCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 289171 52 + 637652 ----ATGGGCAGGCGTCTGTCCTG-------GTT-------------------------GTGTGGGC-CGACCCTGTGCGTGTGCTCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3086235 52 + 81552678 ----ACGGGCGGGCGTCTGTCCCG-------GTT-------------------------GTGTGGGC-CGACCCCGTGCGTGTGCTCCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3349481 52 + 108979918 ----GCGGTTGGGCGTCTGTCCTG-------GTT-------------------------GCATGAGC-CGACCCTGTGCGTGTGCTCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5060317 52 - 111193037 ----GCGGGTGGGCGTCTGTCCTG-------GTT-------------------------GCATGGGC-CGACCCTGTGCGTGTGCTCCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452811 52 + 3644372 ----GCGGGTGGGCGTCTGTCCTG-------GTT-------------------------GCATGGGC-CGACCCTGTGCGTGTGCTCCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3409233 52 - 10304083 ----GCGGGCGGGCGTCTGTCCTG-------GTT-------------------------GCATGGGC-CGACCCTGTGCGTGTGCTCCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3510289 52 - 107702431 ----GCGGGCGGGCGTCTGTCCTG-------GTT-------------------------GCATGGGC-CGACCCTGTGCGTGTGCTCCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1041331 52 + 1565135 ----GCGGGCGGGCGTCTGTCCTG-------GTT-------------------------GCATGGGC-CGACCCTGTGCGTGTGCTCCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404831 52 - 13651311 ----GCGGGCGGGCGTCTGTCCTG-------GTT-------------------------GCATGGGC-CGACCCTGTGCGTGTGCTCCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3492966 49 - 108792865 ------GGGCGGGTGTCTAAGCTG-------GTT-------------------------GCGTG-GC-TGACCCTGTGCCTGTGCTGTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3137080 30 - 7082604 ------GGG--------------------------------------------------GGGTG-GC-TGACCCGGTACGTGTGCT-CT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 623232 49 + 5243153 ------GGGCGGGTGTCTAACCTG-------GTT-------------------------GCGTG-GC-TGACGCTGTGCGTGTGCTGCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3366250 49 + 7587287 ------GGGCGGGTGTCTAACCTG-------GTT-------------------------GCGTG-GC-TGACCCTGTGCGTGTGCTGCT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2572941 10 + 5252280 -------------------------------------------------------------------------------CTGTGCTCCC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91437415 42 - 120129022 ----ACAGACGGGC------------------TT-------------------------GTGTGTGCGCCACCCTGAGCACGTGTTCTT i mm10.chr12 I 24 I 2 s canFam3.chr17 2072132 53 + 64289059 -------GGGACACGTGGGCCCTGGACAGCAGCC-------------------------GTAT---C-TGACCCCATGCGTGTGTTCCT i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 612295 81 + 2232271 ATAAGCAAACCTGGTTCTAAACTG-------GCTGCAGGTGACGTCTTTCTAATAGTCAGCGTGTCC-TAATTCTGCTCCGGTGCTCCT i dasNov3.JH580157 C 0 I 3 e micMur3.chr8 2673509 235 - 159902609 I e proCoq1.NW_012151163v1 985284 242 + 1238772 I a score=21000.000000 s hg38.chr2_KI270769v1_alt 88682 1 + 120616 C s panTro5.chr2A 3550777 1 + 111504155 C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3411409 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 289223 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3086287 1 + 81552678 C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3349533 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5060369 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452863 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3409285 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3510341 1 - 107702431 C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1041383 1 + 1565135 C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404883 1 - 13651311 C i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3493015 1 - 108792865 C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3137110 1 - 7082604 C i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 623281 1 + 5243153 C i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3366299 1 + 7587287 C i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2673744 1 - 159902609 C i micMur3.chr8 I 235 C 0 s otoGar3.GL873658 2572951 1 + 5252280 C i otoGar3.GL873658 C 0 I 1 s mm10.chr12 91437459 1 - 120129022 C i mm10.chr12 I 2 C 0 s canFam3.chr17 2072185 1 + 64289059 C i canFam3.chr17 C 0 I 3 s dasNov3.JH580157 612379 1 + 2232271 C i dasNov3.JH580157 I 3 C 0 e proCoq1.NW_012151163v1 985284 242 + 1238772 I a score=4910748.000000 s hg38.chr2_KI270769v1_alt 88683 244 + 120616 CCTAGGCCAACAACAACGCTGCCGTGTGTCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTCCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCACGGAGCATGCAGAAGAAACAGGCCCTGCTGGAGGCTGTCGCCGGCAAGGAGGGGGACAGCTTCAACACACAGTGCCTCAAGCTGGC s panTro5.chr2A 3550778 244 + 111504155 CCTAGGCCAACAACAACGCTGCCGTGTGTCTGCTCTACCTGGGCAAGCTGAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTCCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCGCGGAGCATGCAGAAGAAACAGGCCCTGCTGGAGGCTGTCGCCGGCAAGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3411410 244 + 114371477 CCTAGGCCAACAACAACGCTGCCGTGTGTCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTCCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCGCGGAGCATGCAGAAGAAACAGGCCCTGCTAGAGGCTGTCGCCGGCAAGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 289224 244 + 637652 CCTAGGCCAACAACAACGCTGCCGTGTGTCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTCCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTATGAGCTGGAGTCCTCGCGGAGCATGCAGAAGAAACAGGCCCTGCTGGAGGCTGTCGCCGGCAAGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3086288 244 + 81552678 CCTAGGCCAACAACAACGCTGCCGTGTGTCTGCTGTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTCCAGCAGGACCCCAGGCACTATCTGCACGAGAGCGTCCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCGCGGAGCACGCAGAAGAAACAGGCCCTGCTGGAGGCTGTCGCCAGCAAGGAAGGGGACAGCTTCAACACGCAGTGCCTCAAGCTGGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3349534 244 + 108979918 CCTAGGCCAACAACAACGCTGCCGTGTGTCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTCCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCGCGGAGCATGCAGAAGAAACAGGCCCTGCTGGAGGCTGTCGCCGGCAAGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5060370 244 - 111193037 CCTAGGCCAACAACAACGCTGCCGTGTGTCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTCCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCGCGGAGCATGCAGAAGAAACAGGCCCTGCTGGAGGCTGTCGCCGGCAAGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3452864 244 + 3644372 CCTAGGCCAACAACAACGCTGCCGTGTGTCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTCCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCGCGGAGCATGCAGAAGAAACAGGCCCTGCTGGAGGCTGTCGCCGGCAAGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3409286 244 - 10304083 CCTAGGCCAACAACAACGCTGCCGTGTGTCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTCCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCGCGGAGCATGCAGAAGAAACAGGCCCTGCTGGAGGCTGTCGCCGGCAAGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3510342 244 - 107702431 CCTAGGCCAACAACAACGCTGCCGTGTGTCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTCCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCGCGGAGCATGCAGAAGAAACAGGCCCTGCTAGAGGCTGTCGCCGGCAAGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1041384 244 + 1565135 CCTAGGCCAACAACAACGCTGCCGTGTGTCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTCCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCGCGGAGCATGCAGAAGAAACAGGCCCTGCTGGAGGCTGTCGCCGGCAAGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3404884 244 - 13651311 CCTAGGCCAACAACAACGCTGCCGTGTGTCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTCCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCGCGGAGCATGCAGAAGAAACAGGCCCTGCTGGAGGCTGTCGCCGGCAAGGAGGGGGACAGCTTCAACACGCAGTGCCTCAAGCTGGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3493016 244 - 108792865 CCCAGGCCAACAACAACGCTGCGGTGTGCCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTGCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTCCTCTTCAACCTCACCACCATGTACGAGCTGGAGTCCTCACGGAGCATGCAGAAGAAACAGTCCCTGCTCGAGGCTGTGGCCAGCAAGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3137111 244 - 7082604 CCCAGGCCAACAACAACGCCGCCGTGTGTCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTGCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTCCTCTTCAATCTCACCACCATGTACGAGCTGGAGTCCTCGCGGAGCATGCAGAAGAAACAGTCCCTGCTCGAGGCTGTGGCCAGCAAGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 623282 244 + 5243153 CCCAGGCCAACAACAACGCTGCCGTGTGTCTGCTCTACTTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTGCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTCCTCTTCAACCTCACCACCATGTACGAGCTGGAGTCCTCGCGGAGCATGCAGAAGAAACAGTCCCTGCTCGAGGCTGTGGCCAGCAAGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3366300 244 + 7587287 CCCAGGCCAACAACAACGCCGCCGTGTGTCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTGCAGCGGGACCCCAGGCACTACCTGCACGAGAGCGTCCTCTTCAACCTCACCACCATGTACGAGCTGGAGTCCTCGCGGAGCATGCAGAAGAAACAGTCCCTGCTCGAGGCTGTGGCCAGCAAGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2673745 244 - 159902609 CCTAGGCCAACAACAACGCGGCCGTGTGCCTGCTGTACCTGGGCAAGCTCAAGGACTCCCTGCGCCAGCTGGAGGCGCTGGTGCAGCGGGACCCCGGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCGCGCAGCATGCAGAAGAAGCAGGGCCTGCTCGAGGCCGTGGCCAGCAGGGAGGGGGACAGCTTCAACACGCAGTGCCTCAAGCTGGC i micMur3.chr8 C 0 C 0 s proCoq1.NW_012151163v1 985526 244 + 1238772 CCTAGGCCAACAACAACGCCGCCGTGTGCCTGCTGTACCTGGGCAAGCTCAAGGACTCCCTGCGCCAGCTGGAGGCCTTGGTCCAGCGGGACCCCGGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCGCGCAGCATGCAGAAGAAGCAGTGCCTGCTCGAGGCCGTGGCCAGCAGGGAGGGGGACAGCTTTAACACGCAGTGCCTCAAGCTGGC i proCoq1.NW_012151163v1 I 242 I 766 s otoGar3.GL873658 2572953 244 + 5252280 CCTAGGCCAACAACAACGCGGCTGTGTGTCTGCTGTACCTGGGCAGGCTCAAGGACTCCCTGCGACAGCTGGAGGCCATGGTCCAGCAGGATCCCGGGCGCTGTCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCACGCAGTGTGCAGAAGAAGCAGGCCCTGCTCGAGGCCGTCGCCAGCAGGGAGGGGGACAGCTTCAACACACAGTGCCTCAAGCTGGC i otoGar3.GL873658 I 1 I 3 s mm10.chr12 91437460 244 - 120129022 TCCAGGCCAACAACAATGCTGCTGTGTGTCTGCTTTACCTGGGAAAGCTCAAGGACTCCCTGCGGCAGCTGGAGGCCATGGTGCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTACGAGCTGGAGTCCTCAAGGAGCATGCAAAAGAAGCAGAGCCTACTTGAGGCCGTTGCTAGCAAAGAAGGGGACAGCTTCAACACACAGTGCCTGAAGCTGGC i mm10.chr12 C 0 C 0 s canFam3.chr17 2072189 244 + 64289059 CCCAGGCCAACAACAACGCCGCCGTGTGCCTTCTCTACCTGGGCAAACTCAAGGACTCCCTCCGGCAGCTGGAGGCCATGGTCCAGCAGGACCCCCAGCATTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTATGAGCTGGAGTCCTCCCGCAGCATGCAGAAGAAGCAGTCCCTGCTCCAGGCGGTCGCCGGCAAAGAAGGGGACAGCTTCAACACACAGTGCCTCAAGCTGGC i canFam3.chr17 I 3 C 0 s dasNov3.JH580157 612380 244 + 2232271 TCTAGGCAATCAACAACGCGGCCGTGTGTCTGCTCTATCTGGGGAAACTGAAAGATTCCCTCCGGCAGCTGGAAGCCATGGTGCAGCAGGACCCACGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATGTATGAGCTGGAGTCGTCCCGGAGCATGCAGAAGAAGCAGTCCCTGCTGGAGGCGGTGGCCGGCAAAGAAGGGGACAGCTTTAACACGCAGTGTCTCAAGTTAGC i dasNov3.JH580157 C 0 C 0 a score=66710.000000 s hg38.chr2_KI270769v1_alt 88927 6 + 120616 CTAGCT s panTro5.chr2A 3551022 6 + 111504155 CTAGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3411654 6 + 114371477 CTAGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 289468 6 + 637652 CTAGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3086532 6 + 81552678 CTAGCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3349778 6 + 108979918 CTAGCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5060614 6 - 111193037 CTAGCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3453108 6 + 3644372 CTAGCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3409530 6 - 10304083 CTAGCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3510586 6 - 107702431 CTAGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1041628 6 + 1565135 CTAGCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3405128 6 - 13651311 CTAGCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3493260 6 - 108792865 CTAGCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3137355 6 - 7082604 CTAGCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 623526 6 + 5243153 CTAGCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3366544 6 + 7587287 CTAGCT i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2673989 6 - 159902609 GTAGCT i micMur3.chr8 C 0 I 781 s otoGar3.GL873658 2573200 6 + 5252280 GTCACT i otoGar3.GL873658 I 3 C 0 s mm10.chr12 91437704 6 - 120129022 TTAGTT i mm10.chr12 C 0 C 0 s canFam3.chr17 2072433 4 + 64289059 GTAG-- i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 612624 5 + 2232271 ATAGA- i dasNov3.JH580157 C 0 C 0 e proCoq1.NW_012151163v1 985770 766 + 1238772 I a score=41030.000000 s hg38.chr2_KI270769v1_alt 88933 7 + 120616 GCCTCCA s panTro5.chr2A 3551028 7 + 111504155 GCCTCCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3411660 7 + 114371477 GCCTCCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 289474 7 + 637652 GCCTCCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3086538 7 + 81552678 GCCACCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3349784 7 + 108979918 GCCTCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5060620 7 - 111193037 GCCTCCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3453114 7 + 3644372 GCCTCCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3409536 7 - 10304083 GCCTCCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3510592 7 - 107702431 GCCTCCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1041634 7 + 1565135 GCCTCCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3405134 7 - 13651311 GCCTCCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3493266 7 - 108792865 TACCCCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3137361 7 - 7082604 TACCCCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 623532 7 + 5243153 TACCCCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3366550 7 + 7587287 TACCCCA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2573206 6 + 5252280 GCTTTC- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91437710 7 - 120129022 CCCTCCA i mm10.chr12 C 0 I 1525 s canFam3.chr17 2072437 1 + 64289059 G------ i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 612629 6 + 2232271 GCATCC- i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2673995 781 - 159902609 I e proCoq1.NW_012151163v1 985770 766 + 1238772 I a score=1950527.000000 s hg38.chr2_KI270769v1_alt 88940 249 + 120616 ACACACTACGTCAGAAGGACCCGGGTCTTTG-AAACTGTGT-CT-T-GAAGCTAATGTATTAATGTGAC--ATGGAGGAACTCAATAAAACTCCTGCTTCACTGGTGTCT-GCTGCGTGTCTTCTTGGTCCCAAGCCACGGCCCA-GCCCAGGACTTC-CCCGCAGTTGGTCGGCGTTCAGCCA-CGCAGTCCCTGCAGCTGGGTCACTGTTCATGAATGCAAGGG-GCAGG-CGTGCTGGGAGGACAC---AGCTCGTAG--ACA s panTro5.chr2A 3551035 251 + 111504155 ACACACTACGTCAGAAGGACCCGGGTCTTTG-AAACTGTGT-CA-T-GAAGCTAATGTATTAATGTGAC--ATGGAGGAACTCAATAAAACTCCTGCTTCACTGGTGTCT-GCTGCGTGTCTTCTTGGTCCCAAGCCACGGCCCA-GCCCAGGACTGC-CCCACAGTTGGTCGGCGTTCAGCCA-CGCAGTCCCTGCAGCTGGGTCACTGTTCATGAACGCAAGGG-GCAGG-CGTGCTGGGAGGACAT---AGGTCGTAGACACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3411667 251 + 114371477 ACACACTACGTCAGAAGGACCCGGGTCTTTG-AAACTGTGT-CA-T-GAAGCTAATGTATTAATGTGAC--ATGGAGGAACTCAATAAAACTCCTGCTTCACTGGTGTCT-GCTGCGTGTCTTCTTGGTCCCAAGCCACGGCCCA-GCCCAGGACTGC-CCCACAGTTGGTCGGCGTTCAGCCA-CACAGTCCCTGCAGCTGGGTCACTGTTCATGAACGCAAGGG-GCAGG-CGTGCTGGGAGGACAT---AGGTCGTAGACACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 289481 251 + 637652 ACACACTACGTCAGAAGGACCCGGGTCTTTG-AAACTGTGT-CA-T-GAAGCTAATGTATTAATGTGAC--ATGGAGGAACTCAATAAAACTCCTGCTTCACTGGTGTCT-GCTGCATGTCTTCTTGGTCCCAAGCCACAGCCCA-GCCCAGGACTGC-CCCACAGTTGGTCGGCATTCAGCCA-CGCAGTCCCTGCAGCTGGGTCACTGTTCATGAACGCAAGGG-GCAGG-CGTGCTGGGAGGACAC---AGCTCGTAGACACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3086545 250 + 81552678 ACACACTACGTCAGAAGGACCTGGGCCTTTG-GAACTGTGT-CA-T-GAAGCTAATGTATTAATGTGAC--ACGGAGGGACTCAATAAAACTCCTGCTTCACTGGTGTCTGGCTGCATGTCTTCTTGGTCCCAAGCCACGGCCCA-GTCCAGGTCTGC-CCCGCAGTTGGTCGGCATTCAGCCA-CACAGTCCCTGCAGTTGGGCCACTGATCATGAACACAAGGG-GCAGG-CGTGCTGGGAGGACAC---AGCTTGTAGACA-- i nomLeu3.chr19 C 0 M 484 s rheMac8.chr13 3349791 205 + 108979918 GCATACTGTGTCAGAATGACCCGGGTCTTTG-AAACTGTGTCCA-T-GAAGCTAATGTATTAATGTGAC--ACGG----ACTCAATAAAATTGCTGCTTTACTGGTGTCTGGCTGCGTGTCTTCCTGGTTCCAAGCCATGGCCCA-GCCCAGGACT------------------------GCCA-CACAGTCCC--------------------TGAACGCAAGGG-GCAGG-CGTGC-GGGAGAACAC---AGCTCGTAGACACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5060627 206 - 111193037 GCATACTGTGTCAGAATGACCCGGGTCTTTG-AAACTGTGTCCA-T-GAAGCTAATGTATTAATGTGAC--ACGG----ACTCAATAAAACTGCTGCTTCACTGGTGTCTGGCTGCGTGTCTTCCTGGTTCCAGGCCATGGCCCA-GCCCAGGACT------------------------GCCA-CACAGTCCC--------------------TGAACGCAAGGG-GCAGG-CGTGCTGGGAGAACAC---AGCTCGTAGACACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3453121 219 + 3644372 GCATACTGTGCCAGAATGACCCGGGTCTTTG-AAACTGTGTCCA-T-GAAGCTAATGTATTAATGTGAC--ACGG----ACTCAATAAAACTGCTGCTTCA-------CTGGCTGTGTGTCTTCCTGGTTCCAAGCCATGGCCCA-GCCCAGGACT------------------------GCCA-CACAGTCCCTGCAGCGCGGCCCCTGTTCATGAACGCAAGGG-GCAGG-CGTGCTGGGAGAACAC---AGCTCGTAGACACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3409543 226 - 10304083 GCATACTATGTCAGAATGACCCGGGTCTTTG-AAACTGTGTCCA-T-GAAGCTAATGTATTAATGTGAC--ACGG----ACTCAATAAAACTGCTGCTTCACTGGTGTCTGGCTGCGTGTCTTCCTGGGTCCAAGCCATGGCCCA-GCCCAAGACT------------------------GCCA-CACAGTCCCTGCAGCTCGGCCCCTGTTCATGAACGCAAGGG-GCAGG-CGTGCTGGGAGAACAC---AGCTCGTAGACACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3510599 215 - 107702431 GCATACTATGTCAGAATGACCCGGGTCTTTG-AAACTGTGTCCA-T-GAAGCTAATGTATTAATGTGAC--ACGG----ACTCAATAAAACTGCTGCTTCACTGGTGTCTGGCTGCGTGTCTTCCTGGTTCCAAGCCATGGCCCA-GCCCTAGACT------------------------GCCA-CACAGTCCCTGCAGCTCGGCCCCTGTTCATGAACGCAAGGG-GCAT------------GAACAC---AGCTCGTAGACACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1041641 226 + 1565135 GCATACTATGTCAGAATGACTCGGGTCTTTG-AAACTGTGTCCA-T-GAAGCTAATGTATTAATGTGAC--ACGG----ACTCAATAAAACAGCTGCTTCACTGGTGTCTGGCTGCGTGTCTTCCTGGTTCCAAGCCATGGCCCA-GCCCAAGACT------------------------GCCA-CACAGTCCCTGCAGCTCGGCCCCTGTTCATGAACGCAAGGG-GCAGG-CGTGCTGGGAGAACAC---AGCTCGTAGACACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3405141 226 - 13651311 GCAAACTGTGTCAGAATGACCCGGGTCTTTG-AAACTGTGTCCA-T-GAAGCTAATGTATTAATATGAC--ACGG----ACTCAATAAAACTGCTGCTTCACTGGTGTCTGGCTGCGTGTCTCCCTGGTTCCAAGCCACGGCCCA-GCCCAAGACC------------------------GCCA-CACAGTCCCTGCTGCTCGGCCCCCGTTCATGAACGCAAGGG-GCAGG-CATGCTGGGAGAACAC---AGCTCGTAGACACA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3493273 249 - 108792865 GCGCACCACGTCAGTGTGACCC-AGTCTTTG-AAACTGTC--CG-T-GAAGCTAATGCATTAATGTGAC--ATGGAGGGACTCAATAAAACTCCTACTTAAGTGAGGTCTGGGTGCCTGTCTTCCTGATCCCAAGCCATGGCCCA-GGCCACAGCTGC-CTCGCAGCTGGCTGGCCTTCAGCCC-CACAGTCCCTGCAGCTCAGCCACTGTTCATGAACGCAGGGG-GCAGG-CGTGCTGGGAGAACGC---AGCTCATAGACA-A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3137368 235 - 7082604 GCGCACGGCGTCAGCGTGACCC-GGTCTTTG-AAACTGTC--CA-T-GAAACTAATGCATTAATGTGAC--ACGGA-GAATCCAATAAAACTGCTACTTGACTGAGGTCTGGGTGCCTGTCTTCCTGATCCCAAGCCACGGCCCA-GGCCACAGCTGC-CCCGCAGCTGGCTGGCCTTCAGCCC-CACAGTCCCTGCAGCTCAGCCACTGTTCATGAACGCAGGCG-CCAGG-CGAGCTGG-----------------TAGACACA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 623539 249 + 5243153 GCCCATGACGTCAGTGTGACTC-GGTCTTTG-AAACTGTC--CG-T-GAAGCTAATGCATTAATGTGAC--ATGGAGGGACTCAATAAAACTCCTACTTCACTGAGGTCTGGGTGCCTGTCTTCCTGATCCCAAGCCACGGCCCA-GGCCACAGCT-C-CCCGCAGCTGGCTGGCCTTCAGTCC-CACAATCCCTGCAGCTCAGCCACTGTTCATGAATGCAGGGG-GCAGG-CGTGCTGGGAGAACAC---AGCTTGTAGACACA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3366557 250 + 7587287 GCACGCTACGTCAGTGTGACCC-GGTCTTTG-AAACTGTC--TG-T-GAAGCTAATGCATTAATGTGAC--ATGGAGGGACTCAATAAAACTCCTACTTCACTGAGGTCTGGGTGCCTGTCTCCCTGATCCCAAGCCACGGCCCG-GGGCACAGCTGC-CCCGCAGCTGGCTGGCCTTCAGCCC-CACAGTCCCTGCAGCTCAGCCACTGTTCATGAATGCAGGAG-GCAGG-TGTACTGGGAGAACAC---AGCTCATAGACACA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2573212 221 + 5252280 -----------TGGAACACCCAGCATCTCCGTAGACTGTGTACA-T-GGAGCTAACGTATTAATGCAGC--TTGA-GGGGCTTAATAAAACATCT-TTTCCCTGATGTCTGGA---GCATCTTCTTGATCCTGAG--ACTGTCTG-GC----AGCT-------------GCTGGACTCCAGCCA-GCTCCATCCTGCAGCTTGGCCACAGTTCATGGAC---AGGA-ACGGACCATGCCAGGGCTGCACTGACGCTTATGGGCACA i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2072438 249 + 64289059 GCACTCGCCTTCGGAGCCACCAGGGCCTCTGTAAACCATGTACACT-GGACCTAAGATATTAGCAGGACTGACGG----ACTCAATAAAA----TCTTTCACAGGTGCCTGGAAACAGGTCTTCTTTGTCTGGAGCCAGGGTGGAGGTCCAGGCCCTT-CTGGCGCCCTGTCAGACTCCACCGAGCTCCGTGCCCACAGCTCTGCCGCGGTTCAAGAGTCCAGGGG-GTGAA-CGTGCTCTGCACACGG---TGGGCATAGGCA-- i canFam3.chr17 C 0 I 2 s dasNov3.JH580157 612635 243 + 2232271 ---CACTGTGCGAATGTGGAGGGGGTTTGTG--TACTGTATATA-TCGGAGCTAATATATTAATGTGAC--TCTA----GTTCAATAAAC------TATCACTGCTGTTGGGAAGAGTGTCTTCTTGATCATGAGCCACAGCCCA-GGCTTAGACTGTGCTGGCAGCTTGTTGAACTTCAGCCAGCTTAATCCCTGCAGCTCTGCCACTGTTTATGAATAAAAGGGAGTAAA-CAGACTATTAGAATAG---TGTTCGTAGCTAGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2673995 781 - 159902609 I e mm10.chr12 91437717 1525 - 120129022 I e proCoq1.NW_012151163v1 985770 766 + 1238772 I a score=1876599.000000 s hg38.chr2_KI270769v1_alt 89189 249 + 120616 GGAAATCTGGAGTCAGCCTCGGGGCC--T-CTGTT-----CTGGAGGCCAATCCTGCTTTGCTCGTTCC-TTCTGGACATCCTCAGAGAAAAGCTGGGAGGTGTGG--AGACCC-TCTCGCCGTGC--ACCTGCACGTACAGGGAGATTTA-------CAA--CAGGGAAGACA-----CCCCCCACAGATCGCCGC---TCATGCTCCTC-------TTGCCCTCCCCACACA-CCCAAAACTAAGTGCGTTGGTCTTACCCATCCGAGTCTCCTCCAGCCTGATGC s panTro5.chr2A 3551286 239 + 111504155 GGAAATCTGGAGTCAGCCTCGGGGCC--T-CTGTT-----CTGGAGGCCAATCCTGCTTTGCTCGTTCC-TTCTGGACATCCTCAGAGAAAAGCTGGGAGGTGTGG--AGACCC-TCTCGCCATGC--ACCTGCACGTACAGGGGGATTTA-------CAA--CAGGGAAG--------------ACAGATCGCCGC---TCATGCTCCTC-------TTGCCCTCCCCACACA-CCC-AAACTAAGTGCGTTGGTCTTACCCATCCGAGTCTCCTCCAGCCTGATGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3411918 239 + 114371477 GGAAATCTGGAGTCAGCCTCGGGGCC--T-CTGTT-----CTGGAGGCCAATCCTGCTTTGCTCGTTCC-TTCTGGACATCCTCAGAGAAAAGCTGGGAGGTGTGG--AGACCC-TCTCGCCATGC--ACCTGCACGTACAGGGGGATTTA-------CAA--CAGGGAAG--------------ACAGATCACCGC---TCATGCTCCTT-------TTGCCCTCCCCACACA-CCC-AAACTAAGTGCGTTGGTCTTACCCATCCGAGTCTCCTCCAGCCTGATGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 289732 249 + 637652 GGAAATCTGGAGTCAGCCTCGGGGCC--T-CTGTT-----CTGGAGGCCAATCCTGCTTTGCTCGTTCC-TTCTGGACATCCTCAGAGAAAAGCTGGGAGGTGTGG--AGACCC-TCTTGCCGTGC--ACCTGCACGTACAGGGAGATTTA-------CAA--CAGGGAAGACA-----CCCCCCACAGATCGCCGC---TCATGCTCCTC-------TTGCCCTCCCCACACA-CCCAAAACTAAGTGCGTTGGTCTTACCCATCCAAGTCTCCTCCAGCCTGATGC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3349996 247 + 108979918 AGAAATCTGGAGTCAGCCTCAGGGCC--T-TTGTT-----CTGGAGGCC-ATCCTGCTTTGCTCATTCA-TTCTGGACATCCTCAGAGAAAAGCTGGGAGGTATAG--AGACCC-TCTCGCCATGC--ACCTGCACGTGCAGGGGGATTTG-------CAA--CAGGGAAGACA-----CCCCC-ACAGATCGCCGC---TCATGCTCCTC-------TCACCCTCCCCACACA-CCCAGAACTAAGTGCGTTGGTCTTACCCATCCGAGTCTCCTCCGGCCTGATGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5060833 247 - 111193037 AGGAATCTGGAGTCAGCCTCAGGGCC--T-TTGTT-----CTGGAGGCC-ATCCTGCTTTGCTCATTCA-TTCTGGACATCCTCAGAGAAAAGCTGGGAGGTATAG--AGACCC-TCTCGCCATGC--ACCTGCACGTGCAGGGGGATTTG-------CAA--CAGGGAAGACA-----CCCCC-ACAGATCGCCGC---TCATGCTCCTC-------TCACCCTCCCCACACA-CCCAGAACTAAGTGCGTTGGTCTTACCCATCCGAGTCTCCTCCGGCCTGATGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3453340 246 + 3644372 AGAAATCTGGAGTCAGCCTCAGGGCC--T-TTGTT-----CTGGAGGCC-ATCCTGCTTTGCTCATTCA-TTCTGGACATCCTCAGAGAAAAGCTGGGAGGTATAG--AGACCC-TCTCGCCATGC--ACCTGCACGTGCAGGGGGATTTG-------CAA--CAGGGAAGACA------CCCC-ACAGATCGCCAC---TCACGCTCCTC-------TCACCCTCCCCACACA-CCCAGAACGAAGTGCGTTGGTCTTACCCATCCGAGTCTCCTCCGGCCTGATGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3409769 247 - 10304083 GGAAATCTGGAGTCAGCCTCAGGGCC--T-TTGTT-----CTGGAGGCC-ATCCTGCTTTGCTCATTCA-TTCTGGACATCCTCAGAGAAAAGCTGGGAGGTATAG--AGACCC-TCTCGCCATGC--ACCTGCACGTGCAGGGGGATTTG-------CAA--CAGGGAAGACA-----CCCCC-ACAGATCGCTGC---TCATGCTCCTC-------TCACCCTCCCCACACA-CCCAGAACTAAGTGCGTTGGTCTTACCCATCTGAGTCTCCTCCGGCCTGATGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3510814 244 - 107702431 GGAAATCTGGAGTCAGCCTCAGGGCC--T-TTGTT-----CTGGAGGCC-ATCCTGCTTTGCTCATTCC-TTCTGGACATCCTCAGAGAAAAGCTGGGAGG--TAG--AGACCC-TCTCGCCATGC--ACCTACACGTGCAGGGGGATTTG-------CAA--CAGGGAAGACA-----CCCCC--CAGATTGCCGC---TCATGCTCCTC-------TCGCCCTCCCCACACC-CCCAGAACTAAGTGCATCGGTCTTACCCATCCGAGTCTCCTCCGGCCTGATTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1041867 247 + 1565135 GGAAATCTGGAGTCAGCCTCAGGGCC--T-TTGTT-----CTGGAGGCC-ATCCTGCTTTGCTCATTCA-TTCTGGACATCCTCAGAGAAAAGCTGGGAGGTATAG--AGACCC-TCTCGCCATGC--ACCTGCACGTGCAGGGGGATTTG-------CAA--CAGGGAAGACA-----CCCCC-ACAGATCGCCGC---TCATGCTCCTC-------TCACCCTCCCCACACA-CCCAAAACTAAGTGCGTTGGTCTTACCCATCTGATTCTCCTCCGGCCTGATGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3405367 247 - 13651311 GGAAATCTGGAGTCAGCCTCGGGGCC--T-TTGTT-----CTGGAGACC-ATCCTGCTTTGCTCATTCA-TTCTGGACATCCTCAGAGAAAAGCTGGGAGGTCTAG--AGACCC-TCTCGCCATGC--ACCTGCACATGCAGGGGGGTTTG-------CAA--CAGGGAAGACA-----CCCCC-ACAGATGGCCAC---TCATGCTCCTC-------TCACCCTCCCCACACA-CCCAGAACTAAGTGCGTTGGTCTTACTCACCCGAGTCTCCTCCAGCCTGATGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3493522 184 - 108792865 GGAAATCTGGGGTCAGCCTCGGGGCC--T-TTGTT----CCTGGAGGC-----------------------------CATCCTCAGAGGAAAGCTGGGAGCTGCGGC-GGGGCC-TCATTC----------------------GAGATTTA-------CAG--CAGGGAGGA-------------G------GCCGC---CCATGCTCCCC-------TCGCCCTCCCCACA-A-GCCAAAACTAAGCGCGTTGGTCTC---AATCCAAGTCTCCT-CGGCCTGATGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3137603 232 - 7082604 GGAAATCCGGGGTCAGCCTCGGGGCC--G-TTGTT----CCTGGAGGCC-ATCCCGCTTTGCTCATTCC-TTCTGGACATCCTCAGAGGACAGCTGGGAGGTGTGG--GGGCCC-TCTCACCACGC--GCCTGTAC-CGCA-GGGGACTTA-------GAG--CAGGGACGA-------------A------GCCAC---CCATGTGCCCC-------TTGGCCTCCCCACACA-GCCGAAACTAAGTGCGTCGGTCTCATTATTCCAAGTCTCCT-CTGCCTGATGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 623788 234 + 5243153 GGAAATCTGGGGTCAGCCTCGGGGCC--T-TTGTT----CCTGGAGGCC-ATCCTGCTTTGCTCATTCC-TTCTGGACATCCTCAGAAGAAAGCTGGGAGGTGTGGCAGGGCCC-TCTCAACACGC--GCCTGTACGTGCA-GGGGATTTA-------CAG--CACAGATGA-------------A------GCCGC---CCATGCTCCCC-------TTGCCCTCCCCACA-A-GCCAAAACTAAGTGAATTGATCTCGTTAATCCAAGTCTCCT-CGGCCTGATGC i cebCap1.NW_016107454v1 C 0 I 27 s aotNan1.NW_018509326v1 3366807 234 + 7587287 GGAAATCTGGGGTCAGCCTCGGGGCC--T-TTGTT----CCTGGAGGCC-ATCCTGCTTTGCTCATTCC-TTCTGGACATCCTCAGAGGAAAGCTGGGAGGTGTGGCAGGGCCC-TCTCACCACGC--GCCTGTATGTGCA-GGGGATTTA-------CAG--CAGGGACGA-------------A------GCCGC---CCATGCTCCCC-------TTACCCTCCCCACA-A-GCCAAAACTAAGTGCGTTGGTCTCATTAATCCAAGTCTCCT-CGGCCTGATGC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2573433 227 + 5252280 GGCAGCCCACG--CACACATGGGTCC--TCCTGTTTATCCCTGGAGGCC-AGCCTGCCTCGTTCACTAC---CTGAGCATC--CAGAGAAAGGCTGGTGGACGTG---AGCCCT-TCGTGCCACAC--ACCTG-ACGTTCTGGAGGAATTTTTGTCACTAA--TGGTAAAGAAA-----CC----A-----------------------TC-------TTTTTCTTCCCACA-G-CCCCAAACTAAACTTGTCAGTCTTAGTCAGCAGATTCTTTTTCAGCCTGACG- i otoGar3.GL873658 C 0 C 0 s canFam3.chr17 2072689 259 + 64289059 AGTGGCCCAGAGGATGCACTGGGTCCCTT-TTGTTTATTCTTGAAAGCT-GGGCTGCTTCACATATTAA-TTCTGAATATCCTCAGAGACAAGCTGAAAAACATAA--GCTCCCTTCTCACCCTGTAAATCTTCTAGTTCATTTGGGCATA-------AAA--GCAGAGAAACA-----CCAA--ACAGACTGCCATGTGCCTTCCCTCTC-------ATTCCCTCCTCTCACATCCCAGAACTAAACACATCACTTTTATCCATCTGATTCTTTTTCAG-CTGATGC i canFam3.chr17 I 2 C 0 s dasNov3.JH580157 612878 269 + 2232271 GAAAATCCATATTATGCATTGGATCCCTT-TTGTTTATTCTTGGAAGCC-AACCTGCTTCATTTATTAATTTCTGAATATCTTCTGAGAAAAGCTGAAATATATAATAAAGCAT-TCTCACTGTA---GCCTAAATGTTCTAGAAGGTTTA-------TAAATAATGGAAGAGGAATATCAAGC-ATAGATTGCCAT---TCATCTTCTCCCTTTCATTTCCTCCTCCCCCA-C-CCCAAAACTAAGTGCATCAATTTTATCCATCTGATTCTTTTTCAGTCTTATGC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2673995 781 - 159902609 I e mm10.chr12 91437717 1525 - 120129022 I e proCoq1.NW_012151163v1 985770 766 + 1238772 I e nomLeu3.chr19 3086795 484 + 81552678 M a score=201149.000000 s hg38.chr2_KI270769v1_alt 89438 33 + 120616 CAGCCAAACGACCCCTGCCA-GCCTGG---CGGTGGA s panTro5.chr2A 3551525 33 + 111504155 CAGCCAAACGACCCCTGCCA-GCCTGG---TGGTGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412157 33 + 114371477 CAGCCAAACGACCCCTGCCA-GCCTGG---TGGTGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 289981 33 + 637652 CAGCCAAACGACCCCTGCCA-GCCTGG---CGGTGGA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3350243 32 + 108979918 CAGCCAGAC-ACCCCTGCCA-GCCTGG---TAGTGGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061080 32 - 111193037 CAGCCAGAC-ACCCCTGCCA-GCCTGG---TAGTGGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3453586 32 + 3644372 CAGCCAGAC-ACCCCTGCCA-GCCTGG---TAGTGGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3410016 32 - 10304083 CAGCCAGAC-ACCCCTGCCA-GCCTGG---TGGTGGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3511058 32 - 107702431 CAGCCAGAC-ACCCCTGCCA-GCCTGG---TGGTGGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042114 32 + 1565135 CAGCCAGAC-ACCCCTGCCA-GCCTGG---TGGTGGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3405614 32 - 13651311 CAGCCAGAC-ACCCCTGCCA-GCCTGG---TGGTGGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3493706 29 - 108792865 CCTCCGAAC-ACCCCTGATA-GCCTGG---TGGT--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3137835 29 - 7082604 CCGCCGAAC-ACCCCTGACA-GCCTGG---TGGT--- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3367041 26 + 7587287 CCGCCGAAC-ACCCCTGACA-GCCTGG---T------ i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2573660 21 + 5252280 ------------CCTTGAGG-GCCGGG---TACTGGA i otoGar3.GL873658 C 0 I 1 s canFam3.chr17 2072948 32 + 64289059 ----CACGC-ACCGTGGACAGGCCTGGGGATGGTGGA i canFam3.chr17 C 0 C 0 s dasNov3.JH580157 613147 29 + 2232271 ----TGAAA-ACCTTGGACAAGCCTTG---CGGTGGG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2673995 781 - 159902609 I e mm10.chr12 91437717 1525 - 120129022 I e proCoq1.NW_012151163v1 985770 766 + 1238772 I e cebCap1.NW_016107454v1 624022 27 + 5243153 I e nomLeu3.chr19 3086795 484 + 81552678 M a score=1453757.000000 s hg38.chr2_KI270769v1_alt 89471 206 + 120616 --GGAGAGGCCATCACTGTTTCTCCCATAGTTTATACGT----CCACGTGGAGAGTGA-----------------GCTGAGTGGAAC-AGGAAGCACGA-CGCATAATGAAGCACAGGAAGAGCGCG--TAAAACGCAGGCAGGCAGG--GGCTGGGGGTGGTTTTGAAGCCAG-ACACGT-GTTTTCATGTGTTCTCTCATGCCTGAAAG----GCCTTTTGCCCTTACGTTTACACAGT s panTro5.chr2A 3551558 206 + 111504155 --GGAGAGGCCATCACTGTTTCTCCCATAGTTTATACGT----CCACGTGGACAGTGA-----------------GCTGAGTGGAAC-AGGAAGCACGA-CGCATAATGAAGCAAAGGAAGAGCGCG--TAAAACGCAGGCAGGCAGG--GGCTGGGGGCGGTTTTGAAGCCAG-ACACGT-GTTTTCATGTGTTCTCTCATGCCTGAAAG----GCCTTTTGCCTTCACGTTTACACAGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412190 206 + 114371477 --GGAGAGGCCATCACTGTTTCTCCCATAGTTTATACGT----CCACGTGGACAGTGA-----------------GCTGAGTGGAAC-AGGAAGCACGA-CGCATAATGAAGCAAAGGAAGAGCGCG--TAAAACGCAGGCAGGCAGG--GGCTGGGGGCAGTTTTGAAGCCAG-ACACGT-GTTTTCATGTGTTCTCTCATGCCTGAAAG----GCCTTTTGCCTTCACGTTTACACAGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290014 204 + 637652 --GGAGAGGCCATCACTGTTTCTCCCATAGTTTATACGT----CCACGTGGAGAGTGA-----------------GCTGAGTGGAAC-AGGAAGCACGA-CGCATAATGAAGCAAAGGAAGAGCGCG--TAAAACGCAGGCAGGCAGG--GGCTGGGGGTGGTTTTGAAGCCAG-ACACGT-GTTTTCATGTGTTCTCTCATGCCTGAAAG----GCCTTTTGCCTTCACGTTT--ACAGT i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3350275 204 + 108979918 --GGAGAGGCCGTCGCCGTTCCTCCCAGAGTTTATACGT----CCAGGTGGAGCGTGA-----------------GCTGAGTGGAAC-AGGAACCACAA-CGCATAATCAAGCAAAGGAGGAGCACG--TAAAATGCAGGCGGGCAGG--GGCT-GGGGCAGTTTTGAAGCCAG-ACACGTGGTTTTCACATGTTCTTACAGGTCTGAAAG----GCCTTTTGCCTTCACGTTC--ACAGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061112 204 - 111193037 --GGAGAGGCCGTCGCCGTTCCTCCCAGAGTTTATACGT----CCAGGTGGAGCGTGA-----------------GCTGAGTGGAAC-AGGAACCACAA-CGCATAATCAAGCAAAGGAGGAGCACG--TAAAATGCAGGCGGGCAGG--GGCT-GGGGCAGTTTTGAAGCCAG-ACACGTGGTTTTCACATGTTCTTACAGGTCTGAAAG----GCCTTTTGCCTTCACGTTC--ACAGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3453618 204 + 3644372 --GGAGAGGCCGTCGCCGTTCCTCCCAGAGTTTATACGT----CCAGGTGGAGCGTGA-----------------GCTGAGTGGAAC-AGGAACCACAA-CGCATAATCAAGCAAAGGAGGAGCATG--TAAAATGCAGGCGGGCAGG--GCCT-GGGGCAGTTTTGAAGCCAG-ACACGTGGTTTTCACATGTTCTTACAGGTCTGAAAG----GCCTTTTGCCTTCACGTTC--ACAGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3410048 204 - 10304083 --GGAGAGGCCGTCGCCGTTTCTCCCAGAGTTTATATGT----CCAGGTGGAGCGTGA-----------------GCTGCGTGGAAC-AGGAACCACAA-CGCATAAGCAAGCAAAGGAAGAGCACG--TAAAATGCAGGCGGGCAGG--GGCT-GGGGCAGTTTTGAAGCCAG-ACACGTGGTTTTCACATGTTCTTACAGGTCTGAAAG----GCCTTTTGCCTTCACGTTC--ACAGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3511090 204 - 107702431 --GGAGAGGCCATCGCCATTTCTCCCAGAGTTTATACGT----CCAGGTGGAGCGTGA-----------------GCTGAGTGGAAC-AGGAACCACAA-CGCATAATCAAGCAAAGGAAGAGCACG--TAAAATGCAGGCGGGCAGG--GGCT-GGGGCAGTTTTGAAGCCAG-ACACGTGGTTTTCACATGTTCTTACGGGCCTGAAAG----GCCTTTTGCCTTCACGTTC--ACAGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042146 192 + 1565135 --GGAGAGGCCGTCGCCGTTTCTCCCAGAGTTTATACGT----CCAGGTGGAGCGTGA-----------------GCTGAGTGGAAC-AGGAACCACAA-CGCATAAGCAAGCAAAGGAAGAGCACG--TAAAATGCAGGCGGGCAGG--GGCT-GGGGCAGTTTTGAAGCCAG-ACACGTGG------------CTTACAGGCCTGAAAG----GCCTTTTGCCTTCACATTC--ACAGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3405646 203 - 13651311 --GGAGAGGCCGTCGCCGTTTCTCCCACAGTTTATACGT----CCAGGTGGAGCGTGA-----------------GCTGAGTGGAAC-AGGAACCACAA-CGCATAATCAAGCAAAGGAAGAGCACG--TAAAATGCAGGCGGGCAGG--GGCTAGGGGCAGTTTTGAAGCCAG-ACACGTGGTTTTCACATGTTCTTACAGGCCTGAAAG----GCCTTTTGCCTTCACGTT----CAGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3493735 169 - 108792865 --GGAGAGGCCATCACCCTTTCTCCAGCGGTTTATACAC----CCACGCGGAG------------------------------------GGAACCAGCA--GCATCATCAAGCACAGAAAAAGCA-----------AGGGCGGGCAGG--GGCTGGGGGCGG-TTTGAAGCCAG-GCACGTGGTTTTCACGGGTGCTTTCAT-------------GCCTTTTGCTTTCACGTATACAGAGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3137864 209 - 7082604 --GGGGAGGCCATCGCCCTTTCTCCCGCAGTTTATACGC----CCACAGGGAGAGTG------------------GCTGAGTGGAAC-AGGAACCAGGA--GCATAATCGGGCAAAGGCAGCGCACG--TAAAGGGCGGGCGGGCAGG--GGCTGCGGGCGGTTTTGAAGCCAG-GCACGTGGTTTCCACAGGTGCTTTCATGCCTGAAAGTCGGGCCTTTTGCTTTCACGTTGACAGAGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624049 207 + 5243153 --GGTGAGGCCATCACACTTTCTCCCTCAGTTTATACAC----CCACAGGGAGAGTG------------------GCTGAGTGGAAC-AGGAACCAGGA--GCATAATCAAGCAAAGGAAGAGCACG--TAAAA--GGGGCGGGCACG--GGCTGGGGGCAGTTTTGAAGCCAG-GCACATGGTTTTCACGGGTGCTTTCATGTCTGAAAGTCGGGCCTTTTGCTTTCACATTTACAGAGC i cebCap1.NW_016107454v1 I 27 C 0 s aotNan1.NW_018509326v1 3367067 209 + 7587287 --GGAGAGGCCATCACCCTTTCTCCCGCAGTTTATACAC----CCACAGGGAGAGTG------------------GCTGAGTGGAAT-AGGAACCAGGA--GCATAGTCAAGCAAAGGAAGAGCCCG--TAAAAGGCGGGCGGGCAGG--GGCTGGGGGCGGTTTTGAAGCCAG-GCACATGGTTTTCACGGGTGCTTTCATGCCTGAAAGCCGGGCCTTTTGCTTTCACGTTTACAGAGC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2573682 179 + 5252280 --GAAGAAGCTGTCA---TTTCTCCTGGATTTCG---------CCGCGTGGGG----A-----------------GCAGAGCAGGAC-AAAGGCTTCGTGTGCACAATGAAATG-AGGAGGGGCGTT--CACAGCACAGGTCGGGAGG--CA---GGGGCAG-----------A-GCTTATAGTCT------ATTCTGTCATGCCAGGAAGTCAGGACATCAGCTGTAGTATTCACATAGT i otoGar3.GL873658 I 1 C 0 s canFam3.chr17 2072980 177 + 64289059 --AAAGAAGCCACCG-TATTTCTTCTGTGCTTTGTACAT----C-------ACAGGGA-----------------GACGAGAGGAGC------TCCTAA-TGCATA---AAACCAGGGAGG---------------CAGGTGGGTCAG-------GAGGTATTTCTGAACCAAGAACATGTAATATTTATGTGTTCTTTCAT-CCTGAACGTCAGCACATTTGCTTTAGTATTTACACAGt i canFam3.chr17 C 0 N 0 s dasNov3.JH580157 613176 230 + 2232271 TGACAGAATCCATCATTATTTCAGCTGTATTTTATAGATGATACAAGGAGAAGAGCAATGGTTGCATTTAAGGGGAGTGAGTAGAACAAAGGAACTCAG-TGTGTAATAAAACAAAGGGACAGTATATTTGAAGTATATATCAGCAGGTGGATTAGGAGGTATTTTTAACCCAT-ACACAT-----TTAGGTATTCTTTTATGCCTGTCAG----TACATTTGCTTTCATATTTACATAAT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2673995 781 - 159902609 I e mm10.chr12 91437717 1525 - 120129022 I e proCoq1.NW_012151163v1 985770 766 + 1238772 I e nomLeu3.chr19 3086795 484 + 81552678 M a score=65834.000000 s hg38.chr2_KI270769v1_alt 89677 7 + 120616 TATTCCT- s panTro5.chr2A 3551764 7 + 111504155 TATTCCT- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412396 7 + 114371477 TATTCCT- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290218 7 + 637652 TTTTCCT- i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3350479 7 + 108979918 TATTCCT- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061316 7 - 111193037 TATTCCT- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3453822 7 + 3644372 TATTCCT- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3410252 7 - 10304083 TATTCCT- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3511294 7 - 107702431 TATTCCT- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042338 7 + 1565135 TATTCCT- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3405849 7 - 13651311 TATTCCT- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3493904 7 - 108792865 TATTCCT- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138073 7 - 7082604 TATTCCT- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624256 7 + 5243153 TATTCCT- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367276 7 + 7587287 TATTCCT- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2573861 7 + 5252280 TGTCCTT- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 613406 8 + 2232271 CATGCCCT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2673995 781 - 159902609 I e mm10.chr12 91437717 1525 - 120129022 I e proCoq1.NW_012151163v1 985770 766 + 1238772 I e nomLeu3.chr19 3086795 484 + 81552678 M a score=156844.000000 s hg38.chr2_KI270769v1_alt 89684 14 + 120616 GCTTTTGAAGAACT s panTro5.chr2A 3551771 14 + 111504155 GCTTTTGAAGAACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412403 14 + 114371477 GCTTTTGAAGAACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290225 14 + 637652 GCTTTTGAAGTACT i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3350486 14 + 108979918 GCTTTTGAAGAACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061323 14 - 111193037 GCTTTTGAAGAACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3453829 14 + 3644372 GCTTTTGAAGAACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3410259 14 - 10304083 GCTTTTGAAGAACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3511301 13 - 107702431 GCTTTTGAAGAAC- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042345 14 + 1565135 GCTTTTGAAGAACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3405856 14 - 13651311 GCTTTTGAAGAACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3493911 14 - 108792865 GCTTTTAAAGAACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138080 14 - 7082604 GCTTTTAAAGAAGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624263 14 + 5243153 GCTTTTAAAGAACT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367283 14 + 7587287 GCTTTTAAAGAACT i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 986536 14 + 1238772 GCTTTTAAAAAATT i proCoq1.NW_012151163v1 I 766 C 0 s otoGar3.GL873658 2573868 14 + 5252280 GCTTTTAAAAAATT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 613414 14 + 2232271 GCTTTGAAAAAAGC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2673995 781 - 159902609 I e mm10.chr12 91437717 1525 - 120129022 I e nomLeu3.chr19 3086795 484 + 81552678 M a score=1254008.000000 s hg38.chr2_KI270769v1_alt 89698 116 + 120616 T-AAAGTACCTGAAAATGTCTTCACTTTACGAAAGAAC-TCTGCCAAGGGTTCTCTAAATATCTAGCTTTGTGGAT--AGTTTTAAAT--------ATAATTCATTTTACAGAC--TGTGATATAAACAT s panTro5.chr2A 3551785 116 + 111504155 T-AAAGTACCTGAAAATGTCTTCACTTTACGAAAGAAC-TCTGACAAGCGTTCTCTAAATATCTAGCTTTGTGGGT--AGTTTTAAAT--------ATAATTCATTTTACAGAC--TGTGATGTAAACAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412417 116 + 114371477 T-AAAGTACCTGAAAATGTCTTCACTTTACGAAAGAAC-TCTGACAAGCGTTCTCTAAATATCTAGCTTTGTGGGT--AGTTTTAAAT--------ATAATTCATTTTACAGAC--TGTGATGTAAACAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290239 112 + 637652 T-AAAGTACCTGAAAATGTCTTCACTTTACGAAAGAA---CTGACAAGGGTTCTCTAAATATCTAGCTTTGTGGAT--AGTTTTAAAT--------ATAATTCATTTTACAGAC----TGATATAAACAT i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3350500 116 + 108979918 G-AAAGTACCTGAAAGTTTCTTCACATTACGAAAGAAC-TCTGACAAGGGTTCTCTAAACATCTAGCTTTGTGGAT--AGTTTTAATT--------ATAATTCATTTTAAAGAC--TGTGATATAAACAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061337 116 - 111193037 G-AAAGTACCTGAAAGTTTCTTCACATTACGAAAGAAC-TCTGACAAGGGTTCTCTAAACATCTAGCTTTGTGGAT--AGTTTTAATT--------ATAATTCATTTTAAAGAC--TGTGATATAAACAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3453843 116 + 3644372 G-AAAGTACCTGAAAGTCTCTTCACATTACGAAAGAAC-TCTGACAAGGGTTCTCTAAACATCTAGCCTTGTGGAT--AGTTTTAATT--------ATAATTCATTTTAAAGAC--TGTGATATAAACAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3410273 116 - 10304083 G-AAAGTACCTGAAAATTTCTTCACATTACGAAAGAAC-TCTGACAAGGGTTCTCTAAACATCTAGCTTTGTGGAT--AGTTTTAATT--------ATAATTCATTTTAAAGAC--TGTGATATAAACAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3511314 115 - 107702431 --AAAGTACCTGAAAATTTCTTCACATTATGAAAGAAC-TCTGACAAGGGTTCTCTAAACATCTAGCTTTGTGGAT--AGTTTTAATT--------ATAATTCATTTTAAAGAC--TGTGATATAAACAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042359 116 + 1565135 G-AAAGTACCTGAAAATTTCTTCACATTACGAAAGAAC-TCTGACGAGGGTTCTCTAAACATCTAGCTTTGTGGAT--AGTTTTAATT--------ATAATTCATTTTAAAGAC--TGTGATATAAACAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3405870 116 - 13651311 G-AAAGTACCTGAAAATTTCTTCACATTACGAAAGAAC-TCTGACAAGCGTTCTCTAAACATCTAGCTTTGTGGAT--CGTTTTAATT--------ATAATTCATTTTAAAGAC--TGTGATACAAACAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3493925 104 - 108792865 T-AACGTACCTGAACGTTTCTTCACTTTATGAGAGAAC-TCTGACAAGGATTCTCTAAATATCTAGC--------------TTTAAAT--------ATCATTCATTTTAAGGAC--TGTGATATAAACAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138094 104 - 7082604 T-AAGGTACCTGAACATTTCTTCACTTTATGAGAGAAC-TCTGACAAGGGTTCTCTAAATATCTAGC--------------TTTAAAT--------ATAATTCATTTTAAGGAC--TGTGATATAAACAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624277 104 + 5243153 T-AAAGTACCTAAAAATGTCTTCACTTTATGAGAGAAC-TCTGACAAGGGTTCTCTAAATATCTAGC--------------TTTAAAT--------ATAATTCATTTTAAGGAC--TATGATATAAACAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367297 105 + 7587287 TAAAAGTACCTGAAAATTTCTTCACTTTATGAGAGAAC-TCTGACAAGGGTTCTCTAAATATGTAGC--------------TTTAAAT--------ATAATTCATTTTAAGGAC--TCTGATATAAACAT i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2674776 118 - 159902609 T-AAAATACCTGAAAATTTCTTCAATTAATTAAAGAAC-TCTGGCAAAGGTGCTTTGAATATCTAGCTTTTCTAATACATTTTTAAAT--------ATAATTCATTTTAA--ACACTATAATATAAACAT i micMur3.chr8 I 781 I 29 s proCoq1.NW_012151163v1 986550 120 + 1238772 T-AAAATACCTGAAAATTTCTTCAATTTACTAAAGAAC-TCTGGCAAAGGTGCTTTAAATATCTGGCTTTTCTAATACATTTTTAAAT--------ATAATTCATTTTAAAGACTCTATAATATAAACAT i proCoq1.NW_012151163v1 C 0 I 3 s otoGar3.GL873658 2573882 128 + 5252280 T-CAAATACCTGAAAATTTCTTCACTTTATTGAAGATC-TCTAGCAAGAGTGCTTTAAATATCTACCTTTTCTAATGCATTTTCAAACATACTCTAATAATTCATTTTAGAGACTCTGTAATATAAACAG i otoGar3.GL873658 C 0 I 3 s dasNov3.JH580157 613428 121 + 2232271 T-AAAGTACCTGAAAATTTCTTCCCTTTGCTAAAGAACTTCTGGCAAGGGTCCCTTAAATATCTAGCTCTTCTAATACATTTTAAAAT--------ATCATTCATTTTAGAGACTCTGTGATATGAACAT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e nomLeu3.chr19 3086795 484 + 81552678 M a score=351764.000000 s hg38.chr2_KI270769v1_alt 89814 36 + 120616 TTGC--------ACAAAGCGAAGCCATATTTCTGTTAATTTTTG s panTro5.chr2A 3551901 36 + 111504155 TTGC--------ACAAAGCGAAGCCATATTTCTGTTAATTTTTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412533 36 + 114371477 TTGC--------ACAAAGCGAAGCCATATTTCTGTTAATTTTTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290351 36 + 637652 ATGC--------ACAAAGCGAAGCCATATTTCTGTTAATTTTTG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3350616 36 + 108979918 CTAT--------ACAAAGCGAAGCCGTATTTCTGTTAATTTTTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061453 36 - 111193037 CTAT--------ACAAAGCGAAGCCATATTTCTGTTAATTTTTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3453959 36 + 3644372 CTAT--------ACAAAGCGAAGCTATATTTCTGTTAATTTTTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3410389 36 - 10304083 CTAT--------ACAAAGCGAAGCCATATTTCTGTTCATTTTTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3511429 36 - 107702431 CTAT--------ACAAAGCGAAGCCATATTTCTGTTAATTTTTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042475 36 + 1565135 CTAT--------ACAAAGCGAAGCCATATTTCTGTTAATTTTTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3405986 36 - 13651311 CTAT--------ACAAAGCGAAGCCATATTTCTGTTAATTTTTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494029 34 - 108792865 CTGC--------ACAAGGCGAAGCCATA--TCTGTTAATTTTTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138198 36 - 7082604 CTGC--------ACAAGGCGAAGCCACATTTCTGTTAATTTTTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624381 28 + 5243153 CTGC--------ACAAGGCGAAGCCATATTTCTGTT-------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367402 36 + 7587287 CTGC--------ACAAGGCGAAGCCATATTTCTGTTAATTTTTG i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 986673 36 + 1238772 TCGT--------GCAAAGCAAAGCTTTATTTCTATTCATTCTTT i proCoq1.NW_012151163v1 I 3 C 0 s otoGar3.GL873658 2574013 35 + 5252280 GTGC--------ACAAAGCCAAGC-TTGTTCCTAGTCAGTCTTT i otoGar3.GL873658 I 3 C 0 s dasNov3.JH580157 613549 44 + 2232271 CTGTTGCGTAAAGCAAAGCAAAACTATATTTCTATTCGTTTTTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2674894 29 - 159902609 I e mm10.chr12 91437717 1525 - 120129022 I e nomLeu3.chr19 3086795 484 + 81552678 M a score=404095.000000 s hg38.chr2_KI270769v1_alt 89850 37 + 120616 TAATAGAG-TAGAAACATACAAACACTGCATCTAC----CAG s panTro5.chr2A 3551937 41 + 111504155 TAATAGAG-TAGAAACATACAAACACTGCATCTACCAGACAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412569 41 + 114371477 TAATAGAG-TAGAAACATACAAACACTGCATCTACCAGACAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290387 37 + 637652 TAATAGAG-TGGAAACATACAAACACTGCATCTAC----CAG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3350652 37 + 108979918 TAATGGAG-TAGAAACATAGAAACACAGCATCTAC----CAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061489 37 - 111193037 TAATGGAG-TAGAAACATAGAAACACAGCATCTAC----CAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3453995 37 + 3644372 TAATGGAG-TAGAAACATAGAAACACAGCATCTAC----CAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3410425 37 - 10304083 TAATGGAG-TAGAAACAGAGAAACACAGCATCTAC----CAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3511465 37 - 107702431 TAATGGAG-TAGAAACGTAGAAACACAGCATCTAC----CAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042511 37 + 1565135 TAATGGAG-TAGAAACAGAGAAACACAGCATCTAC----CAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406022 37 - 13651311 TAATGGAG-TAGAAACATAGAAACACAGCATCTAC----CAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494063 37 - 108792865 TAATAGAG-AAGAAATATACAAACACAGCATCTAC----CAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138234 37 - 7082604 TAACAGAG-AAGAAACACAAAAACACAGCATCTAC----CAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624409 29 + 5243153 ---------AAGAAACATACAAACACAGCATCTAC----CAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367438 35 + 7587287 TAATAGAG-AAGAAAC--ACCAACACAGCATCTAC----CAG i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2674923 37 - 159902609 TAATAAAG-TAGAAACATACAAATACAGTATCTGC----TAG i micMur3.chr8 I 29 C 0 s proCoq1.NW_012151163v1 986709 37 + 1238772 TAATAAAG-TAGAAACATACAAATACAGCATCTCC----GAG i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2574048 37 + 5252280 GGGTAAAG-GAGAAACACAGAGACAGAGCATCTCC----CAG i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 613593 38 + 2232271 TAATAAAGCAAAAAACACACAAATATAGCATCTAA----CAG i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e nomLeu3.chr19 3086795 484 + 81552678 M a score=217338.000000 s hg38.chr2_KI270769v1_alt 89887 22 + 120616 ACAGTCTCAGCCCATTTGCTGA s panTro5.chr2A 3551978 22 + 111504155 ACAGTCTCAGCCCGTTTGCTGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412610 22 + 114371477 ACAGTCTCAGCCCATTTGCTGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290424 22 + 637652 ACAGTCTCAGCCCATTTGCTGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087281 22 + 81552678 ACAGTCTCAGCCCATTTGCTGA i nomLeu3.chr19 M 484 C 0 s rheMac8.chr13 3350689 22 + 108979918 ACAGTCTCAGCCCATTTGCTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061526 22 - 111193037 ACAGTCTCAGCCCATTTGCTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454032 22 + 3644372 ACAGTCTCAGCCCATTTGCTGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3410462 9 - 10304083 ACAGTCTTA------------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3511502 9 - 107702431 ACAGTCTTA------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042548 9 + 1565135 ACAGTCTTA------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406059 22 - 13651311 ACAGTCTCAGCCCATTTGCTGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494100 22 - 108792865 ACAGTCTCAACCCATTTGCTGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138271 22 - 7082604 ACAGTCTCAACCCATTTGCTGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624438 22 + 5243153 ACAGTCTCAGCTCATTTGCTGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367473 22 + 7587287 ACAGTCTCAACCCATTTGCTGA i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2674960 22 - 159902609 GCAGTCTCAACCCATTTGTTGA i micMur3.chr8 C 0 I 29 s proCoq1.NW_012151163v1 986746 22 + 1238772 GCAGTCTCAGCCCATTTGTTGA i proCoq1.NW_012151163v1 C 0 C 0 s otoGar3.GL873658 2574085 9 + 5252280 ACAGTCTGA------------- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 613631 22 + 2232271 GCTGTCTCAATGCATTTGTTGG i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I a score=99650.000000 s hg38.chr2_KI270769v1_alt 89909 29 + 120616 CATCTAGATTAATTATGCATTAAAAGAAA s panTro5.chr2A 3552000 29 + 111504155 CATCTAGATTAATTATGCATTAGAATAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412632 29 + 114371477 CATCTAGATTAATTATGCATTAGAATAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290446 29 + 637652 CATCTAGATTAATTATGCATTAAAATAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087303 26 + 81552678 CATCTAGATTAATTATGCATTAAAAT--- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3350711 25 + 108979918 TATCTAGGTTAATTTGGCATTAAAA---- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061548 25 - 111193037 TATCTAGGTTAATTTGGCATTAAAA---- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454054 25 + 3644372 TATCTAGGTTAATTTGGCATTAAAA---- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3410471 10 - 10304083 ---------------GGCATTAAAA---- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3511511 10 - 107702431 ---------------GGCATTAAAA---- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042557 10 + 1565135 ---------------GGCATTAAAA---- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406081 25 - 13651311 TATCTAGGTTAATTAAGCATTAAAA---- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494122 25 - 108792865 AATCTAGATTA----CGCATTAAAATAGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138293 25 - 7082604 AATCTAGATTA----CGCATTAAAATAGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624460 25 + 5243153 AATCTAGATTA----CGCATTAAAATAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367495 25 + 7587287 AATCTAGATTA----TGCATTAAAATAGA i aotNan1.NW_018509326v1 C 0 C 0 s proCoq1.NW_012151163v1 986768 25 + 1238772 AATATGGTGTAATTGCACATTAAAC---- i proCoq1.NW_012151163v1 C 0 I 3 s otoGar3.GL873658 2574094 24 + 5252280 -ATACGGTCTCATTGCACTTTACAG---- i otoGar3.GL873658 C 0 I 4 s dasNov3.JH580157 613653 29 + 2232271 AAAAGAGATTAATTACATACGAAAATATT i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2674982 29 - 159902609 I e mm10.chr12 91437717 1525 - 120129022 I a score=844383.000000 s hg38.chr2_KI270769v1_alt 89938 76 + 120616 AGAAAAAAGAGGTGAGACAGCCAAAAGGACTGTTGGACACCAAGGAGGTTTCAAGATCTTTCTCTTCAAAAAGAGA---- s panTro5.chr2A 3552029 76 + 111504155 AGAAAAAAGAGGTGAGACAGCCAAAAGGACTGTTGGACACCAAGGAGGTTTCAAGATCTTTCTCTTCAAAAAGAGA---- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412661 76 + 114371477 AGAAAAAAGAGGTGAGACAGCCAAAAGGACTGTTGGACACCAAGGAGGTTTCAAGATCTTTCTCTTCAAAAAGAGA---- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290475 76 + 637652 AGAAAAAAGAGGTGAGGCAGCCAAAAGGACTGTTGGACACCAAGGAGGTTTCAAGATCTTTCTCTTCAAAAAGAGA---- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087329 73 + 81552678 ---AAAAAGAGGTGAGACAGCCAAAAGGACTGTTGGACACCAAGGAGGTTTCAAAATCTTTCTCTTCGAAAAGAAA---- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3350736 75 + 108979918 -GAAAAAAGAGGTGAGACAGCCAAAAGGACAGCTGGACACCAAGGCGGTTTCAAAATCTCTCTTTTCAACAAGAAA---- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061573 75 - 111193037 -GAAAAAAGAGGTGAGACAGCCAAAAGGACAGCTGGACACCAAGGCGGTTTCAAAATCTCTCTTTTCAACAAGAAA---- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454079 75 + 3644372 -GAAAAAAGAGGTGAGACAGCCAAAAGGACAGCTGGACACCAAGGCGGTTTCAAAATCTCTCTTTTCAACAAGAAA---- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3410481 75 - 10304083 -GAAAAAAGAGGTGAGACAGCCAAAAGGACAGCTGGACACCAAGGCGGTTTCAAAATCTTTCTCTTCAACAAGAAA---- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3511521 75 - 107702431 -GAAAAAAGAGGTGAGACAGCCAAAAGGACAGCTGGACACCAAGGCGGTTTCAAAATCTTTCTCCTCAACAAGAAA---- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042567 75 + 1565135 -GAAAAAAGAGGTGAGACAGCCAAAAGGACAGCTGGACACCAAGGCGGTTTCAAAATCTTTCTCTTCAACAAGAAA---- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406106 75 - 13651311 -GAAAAAAGAGGTGAGACAGCCAAAAGGACAGCTGGACACCAAGGCGGTTTCAAAATCTTTCTCTTCAACAAGAAA---- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494147 63 - 108792865 AG--AAAAGAGGTT-----------TTGGCTGCCAGACACTGAGAAGGTTTCAAAATCTTTCTCTTCAGAAAGAAA---- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138318 61 - 7082604 AG--AAAAAAGGTT-----------TTCGCTGCTGGACAC--AGAAGGTCTCAAAATTTTTCTCTTCAGAAAGAAA---- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624485 65 + 5243153 AGAAAAAAGAGGTT-----------TTGGCTGCTGGACACTGAGAAGGTTTCAAAATCTTTCTCTTCAGAAAGAAA---- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367520 65 + 7587287 AGAAAAAAGAGGTT-----------TTGGCTGCTGGACACTGAGAAGGTTTCAAAATCTTTCTCTTCAGAAAGAAG---- i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2675011 76 - 159902609 AGAAGAAAGAGATGACACAGCCAAAAGGACCATTGAACAACAAGCAGGTTTTAAAATCTTTCTCTTCAAAAGGAGA---- i micMur3.chr8 I 29 I 49 s proCoq1.NW_012151163v1 986796 75 + 1238772 AGAAGAAAGAGATGAGACAGCCAAAA-GACCATTGAACACCAAGGAGGTTTTAAAACCTTTCTCTTCAAAAGGAGA---- i proCoq1.NW_012151163v1 I 3 N 0 s otoGar3.GL873658 2574122 76 + 5252280 AGAAAAAAGAGATGAGACGCTGAAAAGGACCCTTGAACACCAAGGAGGTTTTAAAACCTTTCTCTTCAAAAACAGA---- i otoGar3.GL873658 I 4 I 3 s dasNov3.JH580157 613682 79 + 2232271 -AGAAAAGCAGATGAGAGAGCCAAAAAGACAGTTTTAGAACGAAGAGGTTTTAAACTCTTTCTCTTCAAGAAGATAGAAA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I a score=115292.000000 s hg38.chr2_KI270769v1_alt 90014 20 + 120616 ACTGAAAC-------TATTGTT------AAGCC s panTro5.chr2A 3552105 20 + 111504155 ACTGAAAC-------TATTGTT------AAGCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412737 20 + 114371477 ACTGAAAC-------TATTGTT------AAGCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290551 19 + 637652 ACTGAAAC-------TATCGTT------AAG-C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087402 20 + 81552678 AATGAAAC-------TATTGTT------AAGCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3350811 20 + 108979918 AATGAAAC-------TATTGTT------AAGCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061648 20 - 111193037 AATGAAAC-------TACTGTT------AAGCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454154 20 + 3644372 AATGAAAC-------TATTGTT------AAGCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3410556 20 - 10304083 AATGAAAC-------TATTGTT------AAGCC i cerAty1.NW_012000820v1 C 0 I 734 s chlSab2.chr14 3511596 20 - 107702431 AATAAAAC-------TATTGTT------AAGCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042642 26 + 1565135 AATGAAAC-------TATTGTTATAATAAAGCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406181 20 - 13651311 AATGAAAC-------TATTGTT------AAGCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494210 15 - 108792865 A---AAAC---------TTTTC------CAgcc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138379 17 - 7082604 AA-GAAAC---------TTTTC------CAGCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624550 19 + 5243153 AA-GAAAC-------TATTTTC------CAGCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367585 19 + 7587287 AA-GAAAC-------TGTTTTC------CAgcc i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2574201 25 + 5252280 AATTAAACT--TTAATTTTATA------AAGCC i otoGar3.GL873658 I 3 C 0 s dasNov3.JH580157 613761 30 + 2232271 AATAAAACCAACTTTTATTTTT---AAAAAGCC i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2675087 49 - 159902609 I e mm10.chr12 91437717 1525 - 120129022 I a score=80832.000000 s hg38.chr2_KI270769v1_alt 90034 11 + 120616 CAG-AAAGATGA s panTro5.chr2A 3552125 11 + 111504155 CAG-AAAGCTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412757 11 + 114371477 CAG-AAAGCTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290570 11 + 637652 CAG-AAAGATGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087422 11 + 81552678 CAG-AAAGCTGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3350831 11 + 108979918 CAG-AAAGCTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061668 11 - 111193037 CAG-AAAGCTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454174 11 + 3644372 CAG-AAAGCTGA i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3511616 11 - 107702431 CAG-AAAGCTGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042668 11 + 1565135 CAG-AAAGCTGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406201 11 - 13651311 CAG-AAAGCTGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494225 12 - 108792865 cagaaaagctgg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138396 12 - 7082604 CAGAAAAGCTGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624569 12 + 5243153 CAGAAAAGCTGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367604 12 + 7587287 cagaaaaactgg i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2574226 11 + 5252280 CCC-AAAGTTGA i otoGar3.GL873658 C 0 I 281 s dasNov3.JH580157 613791 11 + 2232271 CCC-AAATCTGA i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2675087 49 - 159902609 I e mm10.chr12 91437717 1525 - 120129022 I e cerAty1.NW_012000820v1 3410576 734 - 10304083 I a score=112676.000000 s hg38.chr2_KI270769v1_alt 90045 12 + 120616 AGATGTAATTAG s panTro5.chr2A 3552136 12 + 111504155 AGATGTAATTAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412768 12 + 114371477 AGATGTAATTAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290581 12 + 637652 AGATGTAATTAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087433 12 + 81552678 AGATGTAATTAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3350842 12 + 108979918 AGATGTAATTAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061679 12 - 111193037 AGATGTAATTAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454185 12 + 3644372 AGATGTAATTAG i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3511627 12 - 107702431 AGATGTAATTAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042679 12 + 1565135 AGATGTAATTAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406212 12 - 13651311 AGATGTAATTAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494237 12 - 108792865 tggtgtaattag i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138408 12 - 7082604 TGATGTAATTAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624581 12 + 5243153 TGATGTAATTAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367616 12 + 7587287 tgatgtgattag i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 613802 12 + 2232271 TGATGTCATTTG i dasNov3.JH580157 C 0 C 0 e micMur3.chr8 2675087 49 - 159902609 I e mm10.chr12 91437717 1525 - 120129022 I e otoGar3.GL873658 2574237 281 + 5252280 I e cerAty1.NW_012000820v1 3410576 734 - 10304083 I a score=12376.000000 s hg38.chr2_KI270769v1_alt 90057 1 + 120616 A s panTro5.chr2A 3552148 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412780 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290593 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087445 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3350854 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061691 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454197 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3511639 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042691 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406224 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494249 1 - 108792865 a i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138420 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624593 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367628 1 + 7587287 a i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2675136 1 - 159902609 A i micMur3.chr8 I 49 C 0 s dasNov3.JH580157 613814 1 + 2232271 A i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e otoGar3.GL873658 2574237 281 + 5252280 I e cerAty1.NW_012000820v1 3410576 734 - 10304083 I a score=387980.000000 s hg38.chr2_KI270769v1_alt 90058 31 + 120616 AGCCCTCCACCTTGAGGGTCTTCCTTCAAAT s panTro5.chr2A 3552149 31 + 111504155 AGCCCTCCACCTTGAGGGTCTTCCTTCAAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412781 31 + 114371477 AGCCCTCCACCTTGAGGGTCTTCCTTCAAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290594 31 + 637652 ATCCCTCCACCTTGCGGGTCTTCCTTCAAAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087446 31 + 81552678 AGCCCTTCACCTTGAGGGTCTTCCTCCAAAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3350855 31 + 108979918 AGCCCTTCACCTTGAGGGTCTTCCTTCAAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061692 31 - 111193037 AGCCCTTCACCTTGAGGGTCTTCCTTCAAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454198 31 + 3644372 AGCCCTTCACCTTGAGGGTCTTCCTTCAAAT i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3511640 31 - 107702431 AGCCGCTCACCTTGAGGGTCTTCCTTCAAAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042692 31 + 1565135 AGCCCTTCACCTTGAGGGTCTTCCTTCAAAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406225 31 - 13651311 AGCCCTTCACCTTGAGGCTCTTCCTTCAAAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494250 31 - 108792865 agcccttcaccttgagggtcttccttcaaat i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138421 31 - 7082604 AGCCCTTCGTCTCGAGGGTCTTCCTTCAAAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624594 31 + 5243153 AGCCCTTCACCTTGAGGGTCTTCCTTCAAAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367629 31 + 7587287 agctcttcaccttgagggtcttccttcaaat i aotNan1.NW_018509326v1 C 0 C 0 s micMur3.chr8 2675137 31 - 159902609 AGCCCTTCACTTTGAGGGTTTTCCTTCAAAT i micMur3.chr8 C 0 N 0 s otoGar3.GL873658 2574518 31 + 5252280 AGGTCCCTTCTTGGAGGGTTTTCCTTCAAGT i otoGar3.GL873658 I 281 C 0 s dasNov3.JH580157 613815 31 + 2232271 AGCCCTTCACCTTGAGGGTTTTCCTTCAAAT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e cerAty1.NW_012000820v1 3410576 734 - 10304083 I a score=473204.000000 s hg38.chr2_KI270769v1_alt 90089 59 + 120616 GTGACTTCAGGG---ATGAAGTGTAAGGCT-CTTCCTCT-GCTCCAACCTGGCACCTTACTGCA---------- s panTro5.chr2A 3552180 59 + 111504155 GTGACTTCAGGG---ATGAAGTGTAAGGCT-CTTCCTCT-GCTCCAACCTGGCACCTCACTGCA---------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412812 59 + 114371477 GTGACTTCAGGG---ATGAAGTGTAAGGCT-CTTCCTCT-GCTCCAACCTGGCACCTCACTGCA---------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290625 59 + 637652 GTGACTTCAGGG---ATGAAGTGTAAGGCT-CTTCCTCT-GCTCCAACCTGGCACCTCACTGCG---------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087477 59 + 81552678 CTGACTTCAGGG---ATGAGATGCAAGGCT-CTTCCTCT-GCTCCCACCTGGCCCCTCACTGCA---------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3350886 59 + 108979918 CTGACTTCAGGG---ATGAGATGCAAGGCT-CTTCCTCC-GCTCAAACCTGGCACCTCACTGCA---------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061723 59 - 111193037 CTGACTTCAGGG---ATGAGATGCAAGGCT-CTTCCTCC-GCTCAAACCTGGCACCTCACTGCA---------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454229 59 + 3644372 CTGACTTCAGGG---ATGAGATGCAAGGCT-CTTCCTCC-GCTCAAACCTGGCACCTCACTGCA---------- i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3511671 59 - 107702431 CTGACTTCAGGG---ATGTGATGCACGGCT-CTTCCTCC-GCTCAAACCTGGCACCTCACTGCA---------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042723 59 + 1565135 CTGACTTCAGGG---ATGAGATGCAAGGCT-CTTCCTCC-GCTCAAACCTGGCACCTCACTGCA---------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406256 59 - 13651311 CTGACTTCAGGG---ATGAGATGCAAGGCT-CTTCCTCC-ACTCAAACCTGGCACCTCGCTGCA---------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494281 59 - 108792865 ccgccttcaggg---gtgaGATGCCAGGCT-GTTCCTCT-GCACAAACCTGGCAGCGCACTGCG---------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138452 60 - 7082604 CTGCCTTCAGGG---GTGAGAGGCCAGGCTGGTTCCTCC-GCACAAACCGGGCAGGGCACTGCG---------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624625 59 + 5243153 CTGCCTTCAGGG---GTGAGATGCCTCGCT-GTTCCTCT-GCACAAACCTGGCAGCGCACTGCG---------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367660 59 + 7587287 ctgccttcagga---gtgaGATGCCAGGCT-GTTCCTCC-GCACAAACCCGGCAGCGCACTGCA---------- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2574549 53 + 5252280 CTGGCTGCAGGA---CTGAG------GGCT-TTTCTCAT-GCTCACTCCTGACGCCACACCACA---------- i otoGar3.GL873658 C 0 I 467 s dasNov3.JH580157 613846 73 + 2232271 CTGGCTGCAGGGGATGAGAGATGGAGGCTT-TTCCCTCTGGCTGAAACCTGGAACCAAATTGTGGAAAGAGACA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e cerAty1.NW_012000820v1 3410576 734 - 10304083 I a score=927299.000000 s hg38.chr2_KI270769v1_alt 90148 112 + 120616 -GGCATCTTACAGGATTTGCCAGAGGATTATGGAGCCCGTCCTTTACAGGCTCGGGGCTCAGAGCTGTCCCCGGCCAGTTGTGCGGGAAAGCAGACAGCAGTGCCCAGGCTCC s panTro5.chr2A 3552239 112 + 111504155 -GACATCTTGCAGGATTTGCCAGAGGATTATGGAGCCTGTCCTTTACAGGCCCAGGGCTCAGAGCTGTCCCCAGCCAGTTGTGCAGGAAAGCAGACAGCAGTGCCCAGGCTCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412871 112 + 114371477 -GACATCTTGCAGGATTTGCCAGAGGATTATGGAGCCTGTCCTTTACAGGCCCAGGGCTCAGAGCTGTCCCCAGCCAGTTGTGCAGGAAAGCAGACAGCAGTGCCCAGGCTCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290684 112 + 637652 -GGCATCTTACAGGATTTGCCAGAGGATTATGGAGCCCGTCCTTTACAGGCCCGGGGCTCAGAGCTGTCCCCGGCCAGTTGTGCAGGAAAGCAGACAGCAGTGCCCAGGCTCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087536 108 + 81552678 -GGCATCTTGCAGGCTTTGCCAGAGG--TATGGAGCCTGTCCTTTCCAGGCCCGGGGCTC--AGCTGTCCCCGGCCAGTTGTGCAGGAAAGCAGACAGCGGTGCCCAGGCTCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3350945 112 + 108979918 -GGCATCTTGCggggtttgcccgtggattatggagcctgtcctttctaggcccgtggctcagagctgtccccagccagttgtgcataaaagCAGACAACAGTGCCCAGGTTCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061782 112 - 111193037 -GGCATCTTGCggggtttgccagtggattatggagcctgtcctttctaggcccgtggctcagagctgtccccagccagttgtgcataaaagCAGACAACAGTGCCCAGGTTCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454288 112 + 3644372 -GGCATCTTGCggggtttgccagtggattatggagcctgtcctttctaggcccgtggctcagagctgtccccagccagttgtgcataaaagCAGACAACAGTGCCCAGGTTCC i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3511730 112 - 107702431 -GGCATCTTGCggggtttgccagtggattatggagcctgtcctttctaggcctgtggctcagagctgtccccagccagttgtgcataaaagCAGACAACAGTGCCCAGGCTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042782 112 + 1565135 -GGCATCTTGCggggtttgccagtggattatggagcctgtcctttctaggcccgtggctcagagctgtccccagccagttgtgcataaaagCAGACAACAGTGCTCAGGCTCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406315 112 - 13651311 -GGCATCTTGCAGGATTTGCCCGtggattatggagcctgtcctttctaggcccgtggctcagagctgtccccagccagttgtgcataaaagCAGACAACAGTGCCCAGGCTTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494340 111 - 108792865 -GGCATCTCGCGGGAACTGCCAGTGGATGAT-GAGCCTGTGCTTTCCAGGCCGGTGGCTCAGAGCAGTCCCCAGCCAGCTGTGCGTGAACGCGGGCAGCAGTGCCCAGGCTCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138512 111 - 7082604 -GGCATCTCGCGGGAGCTGCCAGTGGCTGAC-GAGCCTGTGCCTTCCAGGCCGGCGGCTCAGAGCTGTCCCCCGCCAGCTGTGCGCGAACGCGGACGGCAGTGCCCAGGCTCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624684 111 + 5243153 -GGCATCTCGCGGGAACTGCCAGTGGATGAT-GAGCCTGTGCTTTCCAGGCCGGAGGCTCAGAGCTGTCCCGGGCCAGCTGTGCGTGAACGCGGACGGCAGTGCCCAGGCTCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3367719 111 + 7587287 -GGCATCTCGCGGGAACTGCCAGTGGAAGAT-GAGCCTGTGCTTTCCAGGCCGGTGGCTCAGAGCCGTCCCCGGCCAGCTGTGCGTGAACGCGGACAGCAGTTCCTAGGCTCC i aotNan1.NW_018509326v1 C 0 I 32 s dasNov3.JH580157 613919 113 + 2232271 GGCTGTCCTGTggggatttgaaatggattatagaaactgtcatttctaggtcactggtgcaaaacagtcccaggtcagttgtgcataaaagCAGATAACACTGCACCATCGCC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e otoGar3.GL873658 2574602 467 + 5252280 I e cerAty1.NW_012000820v1 3410576 734 - 10304083 I a score=42810.000000 s hg38.chr2_KI270769v1_alt 90260 9 + 120616 AGCTAGAC-A s panTro5.chr2A 3552351 9 + 111504155 AGCTAGAC-A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412983 9 + 114371477 AGCTAGAC-A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290796 9 + 637652 AGCTAGAC-A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087644 9 + 81552678 AACTAGAC-G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351057 9 + 108979918 AACTAGAC-A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061894 9 - 111193037 AACTAGAC-A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454400 9 + 3644372 AACTAGAC-G i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3511842 9 - 107702431 AACTAGAT-A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042894 9 + 1565135 AACTAGAC-A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406427 9 - 13651311 AACTAGAC-A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494451 8 - 108792865 CACTAGAC-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138623 8 - 7082604 CCCTAGAC-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624795 9 + 5243153 CACTAGACA- i cebCap1.NW_016107454v1 C 0 I 136 s dasNov3.JH580157 614032 9 + 2232271 CACTAGAC-A i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e otoGar3.GL873658 2574602 467 + 5252280 I e aotNan1.NW_018509326v1 3367830 32 + 7587287 I e cerAty1.NW_012000820v1 3410576 734 - 10304083 I a score=223249.000000 s hg38.chr2_KI270769v1_alt 90269 43 + 120616 -TGAGCCCGGCAAATCAGAAACAGAGATCAAAGTTCCCTAGTAA s panTro5.chr2A 3552360 43 + 111504155 -TGAGCCCGGCAAATTAGAAACAGAGATCAAGGTTCCCTAGTAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3412992 43 + 114371477 -TGAGCCCGGCAAATTAGAAACAGAGATCAAGGTTCCCTAGTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290805 43 + 637652 -TGAGCCCGGCAAATCAGAAACAGAGATCAAGGTTCCCTAGTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087653 43 + 81552678 -TGAGCCCAGCAAATTAGAAACAGAGATCAAGGTTCCCTAGTAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351066 43 + 108979918 -TGAGCCCAGCAAATTAGAAACAGAGATCAAGGTTCCCTGGTAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061903 43 - 111193037 -TGAGCCCAGCAAATTAGAAACAGAGATCAAGGTTCCCTGGTAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454409 43 + 3644372 -TGAGCCCAGCAAATTAGAAACAGAGATCAAGGTTCCCTGGTAA i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3511851 43 - 107702431 -TGAGCCCAGCAAATTAGAAACAGAGATCAAGGTTCCCTGGTAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042903 42 + 1565135 -TGAGCCCAGCAAATCAGAAACAGAGA-CAAGGTTCCCTGGTAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406436 43 - 13651311 -TGAGCCCAGCAAATTAGAAACAGAGATCAAGGTTCCCTAGTAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494459 24 - 108792865 --------------------ACGGAGGTCAGGGTGCCCTAGCAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138631 24 - 7082604 --------------------ACGGGGGTCAGGGTGCCCCAGCCG i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 614041 44 + 2232271 GAAAGCCAGCCCAATTAGCAGTAGGAACCTGCGGTCCCTATTAA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e otoGar3.GL873658 2574602 467 + 5252280 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367830 32 + 7587287 I e cerAty1.NW_012000820v1 3410576 734 - 10304083 I a score=246174.000000 s hg38.chr2_KI270769v1_alt 90312 42 + 120616 GCTGGTAAGCCTAAATCCACCCTCCCTCCCAAG-CCCCACCCC s panTro5.chr2A 3552403 42 + 111504155 GCTGGTAAGCCTAAATCCACCCTCCCTCCCAAG-CCCCACCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3413035 43 + 114371477 GCTGGTAAGCCTAAATCCACCCTCCCTCCCAAGCCCCCACCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290848 42 + 637652 GCTGGTAAGCCTAAATCCACCCTCCCTCCCAAG-CCCCACCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087696 42 + 81552678 GCTGGTAAGCCTAAATCCACCCTCCCGCCCAAG-TCCCACCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351109 41 + 108979918 GCCGGTAAGCCTAAACCCACCCTCCC-TCTGAA-CCGCACTCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061946 41 - 111193037 GCCGGTAAGCCTAAACCCACCCTCCC-TCTGAA-CCGCACTCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454452 41 + 3644372 GCCGGTAAGCCTAAACCCACCCTCCC-TCTGAA-CCGCACTCA i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3511894 42 - 107702431 GCTGGTAAGCCTAAACCCACCCTCCCTTCTGAA-CCGCACTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042945 41 + 1565135 GCCGGTAAGCCTAAACCCACCCTCCC-TCTGAA-CCGCACTCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406479 42 - 13651311 GCTGGTAAGCCTAAATCCACCCTCCCTTCTGAA-CTCCACTCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494483 42 - 108792865 GCTGGTAAGCCCAAATCGACCCTCCCTCCCCAG-CCCCACCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138655 42 - 7082604 GCTGGTAAGCCCGAATCGACCCTCCCTCCCCAG-CCCCAGCCC i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3367862 42 + 7587287 GCTGGTAAGCCCAAATCGACCCTCCCTCCCCAG-CCCCATCCC i aotNan1.NW_018509326v1 I 32 I 84 s dasNov3.JH580157 614085 26 + 2232271 --------------ATTGGCCTTTGCGTCCCAC-TCACCCC-- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e otoGar3.GL873658 2574602 467 + 5252280 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e cerAty1.NW_012000820v1 3410576 734 - 10304083 I a score=77922.000000 s hg38.chr2_KI270769v1_alt 90354 12 + 120616 CA-----TGCTGCTGGC s panTro5.chr2A 3552445 12 + 111504155 CA-----TGCTGCTGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3413078 12 + 114371477 CA-----TGCTGCTGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290890 12 + 637652 CA-----TGCTGCTGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087738 12 + 81552678 CA-----TGCTGCTGGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351150 17 + 108979918 CAGCCATTGCTGCTGGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5061987 17 - 111193037 CAGCCATTGCTGCTGGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454493 17 + 3644372 CAGCCATTGCTGCTGGC i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3511936 17 - 107702431 CAGCCATTGCTGCTGGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1042986 17 + 1565135 CAGCCATTGCTGCTGGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406521 17 - 13651311 CAACCACTGCTGCTGGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494525 16 - 108792865 -AGTCATAGCTGCTGGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138697 16 - 7082604 -AGTCACAGCTGCCGGC i saiBol1.JH378218 C 0 I 1 s dasNov3.JH580157 614111 17 + 2232271 CAGTTGCTGCTGTCGGC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e otoGar3.GL873658 2574602 467 + 5252280 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e cerAty1.NW_012000820v1 3410576 734 - 10304083 I a score=486.000000 s hg38.chr2_KI270769v1_alt 90366 1 + 120616 -A s panTro5.chr2A 3552457 1 + 111504155 -A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3413090 1 + 114371477 -A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290902 1 + 637652 -A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087750 1 + 81552678 -A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351167 1 + 108979918 -A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5062004 1 - 111193037 -A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454510 1 + 3644372 -A i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3511953 1 - 107702431 -A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1043003 1 + 1565135 -A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406538 1 - 13651311 -A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3494541 1 - 108792865 -A i calJac3.chr14 C 0 C 0 s dasNov3.JH580157 614128 1 + 2232271 C- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e saiBol1.JH378218 3138713 1 - 7082604 I e otoGar3.GL873658 2574602 467 + 5252280 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e cerAty1.NW_012000820v1 3410576 734 - 10304083 I a score=109372.000000 s hg38.chr2_KI270769v1_alt 90367 21 + 120616 ------TGAGGCCAGGCCAGGTGACAG s panTro5.chr2A 3552458 21 + 111504155 ------TGAGGCCAGGCCAGGTGACAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3413091 21 + 114371477 ------TGAGGCCAGGCCAGGTGACAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290903 21 + 637652 ------TGAGGCCAGGCCAGGTGACAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087751 21 + 81552678 ------TGAGGCCAGGCCAGGTGACAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351168 21 + 108979918 ------TGAGGCCAGGCCCGGTGACAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5062005 21 - 111193037 ------TGAGGCCAGGCCCGGTGACAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454511 21 + 3644372 ------TGAGGCCAGGCCCGGTGACAG i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3511954 21 - 107702431 ------TGAGGCCAGGCCCGGTGACAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1043004 21 + 1565135 ------TGAGGCCAGACCCGGTGACAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3406539 21 - 13651311 ------TGAGGCCAGGCCAGGTGACAG i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 614129 26 + 2232271 TGATGTTGAGAAC-GGCCAGGAGGCGG i dasNov3.JH580157 C 0 I 285 e mm10.chr12 91437717 1525 - 120129022 I e saiBol1.JH378218 3138713 1 - 7082604 I e otoGar3.GL873658 2574602 467 + 5252280 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e calJac3.chr14 3494542 0 - 108792865 C e cerAty1.NW_012000820v1 3410576 734 - 10304083 I a score=87288.000000 s hg38.chr2_KI270769v1_alt 90388 63 + 120616 TATCATTGCCTCGTTTCTTGCCTGGATTATTTCTTCCTGGttt-ttttgttttttttttt-----------------tttt s panTro5.chr2A 3552479 53 + 111504155 TATCATTGCCTCGTTTCTTACCCGGATTATTTCTTCCTG-----------tttttttttt-----------------tttt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3413112 50 + 114371477 TATCATTGCCTCGTTTCTTACCCGGATTAtttcttc--------------cttgtttttt-----------------tttt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 290924 81 + 637652 TATCATTGCCTCGCTTCTTGCCTGGAttatttcttcctgttttgttttgtttttttttttggtttttttttttttggtttt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087772 50 + 81552678 TATCATTGCCTCATGTCTTGCCTGGATTATTGCttt--------------tttttttttt-----------------tttt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351189 38 + 108979918 CATCATTGCCTCAGTTCTTGCCtt--------------------------tttttttttt-----------------tttt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5062026 38 - 111193037 CATCATTGCCTCAGTTCTTGCCtt--------------------------tttttttttt-----------------tttt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454532 34 + 3644372 CATCATTGCCTCAGTTCTTGCC------------------------------tttttttt-----------------tttt i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3511975 38 - 107702431 CATCACTGCCTCAGTTCTTGCCTG--------------------------Attttttttt-----------------tttt i chlSab2.chr14 C 0 I 10 s manLeu1.NW_012104432v1 1043025 25 + 1565135 CATCATTGCCTCAGTTCTTGCCTG--------------------------A------------------------------ i manLeu1.NW_012104432v1 C 0 I 1 s colAng1.NW_012118821v1 3406560 36 - 13651311 TATCATTGACTCAGTTCTTGCCTG--------------------------Attttttttt-----------------tt-- i colAng1.NW_012118821v1 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e saiBol1.JH378218 3138713 1 - 7082604 I e dasNov3.JH580157 614155 285 + 2232271 I e otoGar3.GL873658 2574602 467 + 5252280 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e calJac3.chr14 3494542 0 - 108792865 C e cerAty1.NW_012000820v1 3410576 734 - 10304083 I a score=520037.000000 s hg38.chr2_KI270769v1_alt 90451 101 + 120616 ttttttttgagacaggatcttactctgtcatccatccaggctgaagtgcagtggtgcaaacatgg-ttcactccagcctcaacctcctgggatcaaacgatt s panTro5.chr2A 3552532 101 + 111504155 ttttttttgagacaggatcttattctgtcatccatccaggctgaagtgcagtggtgcaaacatgg-ttcactccagcctcaacctcctgggatcaaacgatt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3413162 101 + 114371477 ttttttttgagacaggatcttattctgtcatccatccaggctgaagtgcagtggtgcaaacatgg-ttcactccagcctcaacctcctgggatcaaacgatt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 291005 101 + 637652 ttttttttgagacaggatcttactctgtcatccatccaggctgaagtgcagtggtgcaaacatag-ttcactccagcctctacctcctgggatcaaacgatt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087822 101 + 81552678 tttttttggagacaggattttactctgtcatccatccaggctgaagtgcagtggtgcaaacatgg-ttcactccagcctcaacctcctgggatcaaacgatt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351227 93 + 108979918 ttttttttgagacagggtctt----tgtcat----ccaggctgaagtgcagtggtgcgaacatgg-ttcactgcagcttcaacctcctgcaatcaaacgatt i rheMac8.chr13 C 0 I 4 s macFas5.chr13 5062064 97 - 111193037 ttttttttgagacagggtcttactctgtcat----ccaggctgaagtgcagtggtgcaaacatgg-ttcactgcagcttcaacctcctgcaatcaaacgatt i macFas5.chr13 C 0 I 1301 s macNem1.NW_012011978v1 3454566 97 + 3644372 ttttttttgagacagggtcttactctgtcat----ccaggctgaagtgcagtggtgcaaacatgg-ttcactgcagcttcaacctcctgcaatcaaacgatt i macNem1.NW_012011978v1 C 0 I 4 s cerAty1.NW_012000820v1 3411310 97 - 10304083 ttttttttgagacagggtcttactctgtcatc---ccaggctgaagtgcagtggtgcaaacatggtttcactgcagcctcaacctcctgcaatcaaa-gat- i cerAty1.NW_012000820v1 I 734 C 0 s chlSab2.chr14 3512023 97 - 107702431 ttttttttgagacagggtcttactctgtcat----ccaggctgaagtgcagtggtgcaaacatgg-ttcactgcagcctcaacctcctgcgatcaaatgatt i chlSab2.chr14 I 10 I 1 s manLeu1.NW_012104432v1 1043051 97 + 1565135 ttttttttgagacagggtcttactctgtcat----ccaggctgaagtgcagtggtgcaaacatgg-ttcactgcagcctcgacctcctgcaatcaaacgatc i manLeu1.NW_012104432v1 I 1 I 1 s colAng1.NW_012118821v1 3406596 97 - 13651311 ttttttttgagacagggtcctactctgtcat----tcaggctgaagtgcagtggtgcaaacatgg-ttcactgcagcctcgacctcctgcgatcaaacgatt i colAng1.NW_012118821v1 C 0 I 5 e mm10.chr12 91437717 1525 - 120129022 I e saiBol1.JH378218 3138713 1 - 7082604 I e dasNov3.JH580157 614155 285 + 2232271 I e otoGar3.GL873658 2574602 467 + 5252280 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e calJac3.chr14 3494542 0 - 108792865 C a score=1593487.000000 s hg38.chr2_KI270769v1_alt 90552 306 + 120616 cc---ccactctcagcctcctgagtagctaggaccaca-agtg-------tgctccaccacgcccagattttttt-tatttttataaagat-gggatctcactatgttgcccaggccagtccctaactcctggcctcaagtgatcctcccacctcggcctcccaaagtgctggggtta-caggtgtgagccatggtgtccagcTAA-TTTTTTTTTCCTACTG-CCTGTATGATTGCAGAATTTTTTGTTTTGTTTTGC-TAGAAGAGGAAAACGGTGCTGTGAGTGTCTATAACGTCTGGGACAA---TTGTAGCTTATCTAGTT s panTro5.chr2A 3552633 308 + 111504155 cc---ccactctcagcctcctgagtagctaggaccaca-agtg-------tgctccaccacgcccagatttttat-tatttttataaagat-gggatctcactatgttgcccaggccagtccctaactcctggcctcaagtgatcctcccacctcagcctcccaaagtgctggggtta-caggtgtgagccatggtgtccagcTAA--TTTTTTTTCCTACTG-CCTGTATGATTGCAGAATTTTTTGTTTTGTTTTGC-TAGAAGAGGAAAACGGTGCTGTGAGTGTCTATAATGTCTGGGACAATTGTTGTAGCTTATCTAGTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3413263 308 + 114371477 cc---ccactctcagcctcctgagtagctaggaccaca-agtg-------tgctccaccacgcccagatttttat-tatttttataaagat-gggatctcactatgttgcccaggccagtccctaactcctggcctcaagtgatcctcccacctcggcctcccaaagtgctggggtta-caggtgtgagccatggtgtccagcTAA--TTTTTTTTCCTACTG-CCTGTATGATTGCAGAATTTTTTGTTTTGTTTTGC-TAGAAGAGGAAAACGGTGCTGTGAGTGTCTATAATGTCTGGGACAATTGTTGTAGCTTATCTAGTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 291106 313 + 637652 cc---ccactctcagcctcctgagtagctaggaccaca-agtggaggctaggctccaccacgcccagattttttt-tatttttataaagat-gggatctcactatgttgcccaggccagtccctaactcctggcctcaagtgatcctcccacctcggcctcccaaagtgctggggtta-caggtgtgagccatggtgtccagctaa-tttttttttCCTGCTG-CCTGTATGATTGCAGAATTCTTTGTTTTGTTTTGC-TAGAAGAGGAAAACGGTGCTGTGAGTGTCTATAACGTCTGGGACAA---CTGTAGCTTATCTAGTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3087923 305 + 81552678 cc---cc---ctcagcctcctgagtagctaggaccaca-agtg-------tgctccaccacgcccaggatttt-t-tatttttatagagat-ggaatctcattatgttgcccaggccagtctctaactcctggcctcaagtgatcctcccacctcggcctcccaaagtgccggggtta-cacgtgtgagccatggtgtccagcTAA-TTTTTTTTCCTTACTG-CCTGTATGATTGCAGAATTTTTTGTTTTGTTTTGC-TAGAAGAGGAAAATGGTGCTGTGAGTGTCTATAATGTCTGGGACAATTGTTGTAACTTATCTAGTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351324 306 + 108979918 cc---ccgcccccagcctcctgaacagctaggaccaca-agtg-------tgctccgccatgcccagattgtt-t-taattttataaagatggggatctcattatgttg-ccaggccagtctctaactcctggcctgaagtgatcctcccacctcggcctcccaaagtgctggggtta-caggtgtgagccatggtgtcctgcTAATTTTTTTTTTCCTACTG-CCTATATGATTGCAACATTTTTTGTTTTGTTTTGC-TAGAGGAGGAAAACGATGCTGTGAGTGTCTATAATGTCTGGGACAA---TTGTAACTTATCTAGTT i rheMac8.chr13 I 4 C 0 s macFas5.chr13 5063462 306 - 111193037 CC---CCGCccccagcctcctgaatagctaggaccaca-agtg-------tgctccgccatgcccagattgtt-t-taattttataaagatggggatctcattatgttg-ccaggccagtctctaactcctggcctgaagtgatcctcccaccttggcctcccaaagtgctggggtta-caggtgtgagccatggtgtcctgcTAATTTTTTTTTTCCTACTG-CCTATATGATTGCAACATTTTTTGTTTTGTTTTGC-TAGAGGAGGAAAACGATGCTGTGAGTGTCTATAATGTCTGGGACAA---TTGTAACTTATCTAGTT i macFas5.chr13 I 1301 C 0 s macNem1.NW_012011978v1 3454667 306 + 3644372 cc---ccgcccccagcctcctgaatagctaggaccaca-agtg-------tgctccgccatgcccagattgtt-t-taattttataaagatggggatctcattatgttg-ccaggccagtctctaactcctggcctgaagtgatcctcccacctcggcctcccaaagtgctggggtta-caggtgtgagccatggtgtcctgcTAATTTTTCTTTTCCTACTG-CCTATATGATTGCAACATTTTTTGTTTTGTTTTGC-TAGAGGAGGAAAACGATGCTGTGAGTGTCTATAATGTCTGGGACAA---TTGTAACTTATCTAGTT i macNem1.NW_012011978v1 I 4 C 0 s cerAty1.NW_012000820v1 3411407 307 - 10304083 cg---tcgcccccagcctcctgaatagcgtggaccacagagtg-------t-ctccgccatgcccagattgtt-taaaattttataaagatggggatctcattatgttg-ccaggccagtctctaact-ctggcctgaagtgatcctcccacctc-gcctcccaaagtgctggcgttaccaggtgtgagccaTGG-GTCCTGCTAATTGTTTTTTTCCTACTGCCCTATATGATTGCAGAATTTTTTGTTTTGTTTTCTGCAGAGGAGGAAAACGATGCTGTGAGTGTCTATAATGTCTGGGACAA---TTGTAACTTATCTAGTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3512121 308 - 107702431 ccccaccacccccagcctcctgaatagctaggaccaca-agtg-------tgctccaccatgcccagattgtt-t-taattttataaagatggggatctcatcatgttg-ccaggccagtctctaactcctggcctgaagtgatcctcccacctcggcctcccaaagtgctggggtta-caggtgtgagccatggtgtcctgcTCA-TTTTTTTTTCCTACTG-CCTATATGATTGCAGAATTTTTTGTTTTGTTTTGC-TAGAGGAGGAAAACGATGCTCTGAGTGTCTATAATGTCTGGGACAA---TTGTAACTTACCTAGTT i chlSab2.chr14 I 1 C 0 s manLeu1.NW_012104432v1 1043149 306 + 1565135 cc---cccgccccagcctcctgaatagctaggaccaca-agtg-------tgctccgccatgcccagattgtt-t-taattttataaagatggggatctcattatgttg-ccaggccagtctctaactcctggcctgaagtgatcctcccacctcggcctcccaaagtgctggggtta-caggtgtgagccatggtgtcctgcTGATTTTTTTTTTCCTACTG-CCTATATGATTGCAGAATTTTTTGTTTTGTTTTGC-TAGAGGAGGAAGACGATGCTGTGAGTGTCTATAATGTCTGGGACAA---TTGTAACGTAACTAGTT i manLeu1.NW_012104432v1 I 1 C 0 s colAng1.NW_012118821v1 3406698 304 - 13651311 cc---gcgcccccagcctcctgaatagctaggaccaca-agtg-------tgctccgccatgcccagattttt-t-taattttataaagatggggatctcattatgttg-ccaggccagtctctaactcctggcctgaagtgatcctcccacctcggcctcccaaaatgctggggtta-caggtgtgagccatggtgtcctgcTAA-TTTTTTTTTCCTACTG-CCTATATGATTGCAGAATTTTTTGTTTTGTTTTGC-TAGAGGAGAAAAA-GATGCTGTGAGTGTCTATAATGTCTGGGACAA---TTGTCACGTACCTAGTT i colAng1.NW_012118821v1 I 5 C 0 e mm10.chr12 91437717 1525 - 120129022 I e saiBol1.JH378218 3138713 1 - 7082604 I e dasNov3.JH580157 614155 285 + 2232271 I e otoGar3.GL873658 2574602 467 + 5252280 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e calJac3.chr14 3494542 0 - 108792865 C a score=284249.000000 s hg38.chr2_KI270769v1_alt 90858 54 + 120616 T-ACACTTAGCTTTTCTTTATGTTAAAAATAAATTATACATCCCAGAAATCTTTT s panTro5.chr2A 3552941 54 + 111504155 T-ACACTTAGCTTTTCTTTATGTTAAAAATAAATTATACATTCCTGAAATCTTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3413571 54 + 114371477 T-ACACTTAGCTTTTATTTATGTTAAAAATAAATTATACATTCCTGAAATCTTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 291419 54 + 637652 C-ACACTTAGCTTTTCTTTATGTTAAAAATAAATTATACATCCCAGAAATCTTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3088228 47 + 81552678 T-ACACTTGGCTTTTCTTT-------AAGTAAATTATACATCCCTGAAATCTTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351630 54 + 108979918 T-ACACTCAGCTTTTCTTTATGTTAAACATAAATTACACATCCCTGAAATCTTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5063768 54 - 111193037 T-ACACTCAGCTTTTCTTTATGTTAAACATAAATTACACATCCCTGAAATCTTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3454973 54 + 3644372 T-ACACTCAGCTTTTCCTTATGTTAAACATAAATTACACATCCCTGAAATCTTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3411714 51 - 10304083 TCACACTCAACTTTTCTTTATGT----CATAAATTACACATCCCTGAAATCTTTT i cerAty1.NW_012000820v1 C 0 I 22 s chlSab2.chr14 3512429 54 - 107702431 T-ACACTCAGCTTTTCTTTATGTTAAACATAAATTACACATCCCTGAAATCTTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1043455 50 + 1565135 T-ACACTCAGCTTTTCTTTATGT----CATAAATTACACATCCCTGAAATCTTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3407002 54 - 13651311 T-ACACTCAGCTTTTCTTTATGTTAAACATAAATTACACATCCCTGAAATCTTTT i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 614440 51 + 2232271 T-ACACGCGGTTTTCTTTTATCTTAAAAATAAA--ATACACCCCCTAAATCTCC- i dasNov3.JH580157 I 285 C 0 e mm10.chr12 91437717 1525 - 120129022 I e saiBol1.JH378218 3138713 1 - 7082604 I e otoGar3.GL873658 2574602 467 + 5252280 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e calJac3.chr14 3494542 0 - 108792865 C a score=124994.000000 s hg38.chr2_KI270769v1_alt 90912 27 + 120616 CTAGAGCCAATTGAAGTGAATGGCTAA s panTro5.chr2A 3552995 27 + 111504155 CTAGAGCCAAGTGAAGTGAATGGCTAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3413625 27 + 114371477 CTAGAGCCAAGTGAAGTGAATGGCTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 291473 27 + 637652 CTAGAGCCAAGTGAAGTGAATGGCTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3088275 27 + 81552678 CTAGAGCCAAGTGAAGTGAATGGCTAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351684 27 + 108979918 CTAGAGCCGAGTACAGTGGATGGGTAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5063822 27 - 111193037 CTAGAGCCGAGTACAGTGGATGGGTAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3455027 27 + 3644372 CTAGAGCCGAGTACAGTGGATGGGTAA i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3512483 27 - 107702431 CTAGAGCCAAGTAGAGTGGATAGTTAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1043505 27 + 1565135 CTAGAGCCAAGTACAGTGGATGGGTAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3407056 27 - 13651311 CTAGAGCCAAGTAGAGTGGATGGTTAA i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 614491 27 + 2232271 CAAGTGTCAAGTACAGTGAAGCGTTAA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e saiBol1.JH378218 3138713 1 - 7082604 I e otoGar3.GL873658 2574602 467 + 5252280 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e calJac3.chr14 3494542 0 - 108792865 C e cerAty1.NW_012000820v1 3411765 22 - 10304083 I a score=674402.000000 s hg38.chr2_KI270769v1_alt 90939 116 + 120616 CGATCAGAAAGCTTATTTT---------CTAACTGGAAAATGGGAA-C-TCGCTGAGTTGATGATGGGCTCACAACTGTGGAAATGCCCACCCTGGAATGCACAGTGGAGAATGAAGAAGCCAGTAA s panTro5.chr2A 3553022 116 + 111504155 CCATCAGAAAGCTTATTTT---------CTAACTGGAAAATGGGAA-C-TCGCTGAGTTGATGATGGGCTCACAACTGTGGAAATGCCCACCCTGGAATGCACAGTGGAGAATGAAGAAGCCAGTAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3413652 116 + 114371477 CCATCAGAAAGCTTATTTT---------CTAACTGGAAAATGGGAA-C-TCGCTGAGTTGATGATGGGCTCACAACTGTGGAAATGCCCACCCTGGAATGCACAGTGGAGAATGAAGAAGCCAGTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 291500 116 + 637652 CCAGCAGAAAGCTTATTTT---------CTAACTGGAAAATGGGAA-C-TCGCTGAGTTGATGATGGGCTCACAACTGTGGAAATGCCCACCCTGGAATGCACAGTGGAGAATGAAGAAGCCAGTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3088302 116 + 81552678 CCATCAGAAAGCTAATTTT---------CTAACTGGAAAATGGGAACC-TCACTGAGTTGATGATGGGCTCACTACTGTGGAAATG-CCACCCTGGAATGCACAGTGGAGAATGAAAAAGCCAGTAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351711 115 + 108979918 CCATCAGAAAGCTTATTTT---------CTAACTGGAAAATGGGAA-CATCGCTGAGTTGATGATGGGCTCACTACTGTGGAAATGCCCACTCTGGAATG--CAGTGGAGAATGAAAAAGTCAGTAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5063849 115 - 111193037 CCATCAGAAAACTTATTTT---------CTAACTGGAAAATGGGAA-CATCGCTGAGTTGATGATGGGCTCACTACTGTGGAAATGCCCACTCTGGAATG--CAGTGGAGAATGAAAAAGTCAGTAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3455054 115 + 3644372 CCATCAGAAAGCTTATTTT---------CTAACTGGAAAATGGGAA-CATCGCTGAGTTGATGATGGGCTCACTACTGTGGAAATGCCCACTCTGGAATG--CAGTGGAGAATGAAAAAGTCAGTAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3411787 115 - 10304083 CCATCAGAAAGCTTATTTT---------CCAACTGGAAAATGGGAA-CGTCGCTGAGTTGATGATGGGCTCACTACTGTGGAAATGCCCACTCTGGAATG--CAGTGGAGAATGAAAAAGTCAGTAA i cerAty1.NW_012000820v1 I 22 C 0 s chlSab2.chr14 3512510 115 - 107702431 CCATCAGAAAGCTTATTTT---------CTAACTGGAAAATGGGAA-CGTCGCTGAGTTGATGATGGGCTCACTACTGTGGAAATGCCCACTCTGGAATG--CAGTGGAGAATGAAAAAGTCAGTAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1043532 115 + 1565135 CCATCAGAAAGCTTATTTT---------CTAACTGGAAAATGGGAA-CGTCGCTGAGTTGATGATGGGCTCGCTACTGTGGAAATGCCCACGCTGGAATG--CAGTGGAGAATGAAAAAGTCAGTAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3407083 115 - 13651311 CCATCAGAAAGCTTATTTT---------CTAACTAGAAAATGGGAA-CGTCGCGGAGTTGATGACGGGCTTACTACTGCGGAAATGCCCACTCTGGAATG--CAGTAGAGAATGAAAAAGCCAGTAA i colAng1.NW_012118821v1 C 0 C 0 s dasNov3.JH580157 614518 127 + 2232271 CTATCAAGGAGCTTGCCTTTTATACATCCCAGGTAGAAAATGAGAAACCTCATTAGGTTGCTACTGGGCTAAATACTGCTTGAATGCCTACTCTTTAAAGCACAGCCGGGAATTCAAAAGCCAGTAA i dasNov3.JH580157 C 0 I 1416 e mm10.chr12 91437717 1525 - 120129022 I e saiBol1.JH378218 3138713 1 - 7082604 I e otoGar3.GL873658 2574602 467 + 5252280 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e calJac3.chr14 3494542 0 - 108792865 C a score=78581.000000 s hg38.chr2_KI270769v1_alt 91055 16 + 120616 CCCTGATGG-CATCGTT s panTro5.chr2A 3553138 16 + 111504155 CCCTGATGG-CATCGTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3413768 16 + 114371477 CCCTGATGG-CATCGTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 291616 16 + 637652 CCCTGATGG-CATCGTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3088418 17 + 81552678 CCCTGATGGCCATCGTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351826 17 + 108979918 CCCTGATGGCCATGGTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5063964 17 - 111193037 CCCTGATGGCCATGGTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3455169 17 + 3644372 CCCTGATGGCCATGGTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3411902 17 - 10304083 CCCCGATGGCCATGGTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3512625 17 - 107702431 CCCTGATGGCCATGGTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1043647 17 + 1565135 CCCTGATGGCCATGGTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3407198 17 - 13651311 CCCTGACGGCCGTGGTT i colAng1.NW_012118821v1 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e saiBol1.JH378218 3138713 1 - 7082604 I e dasNov3.JH580157 614645 1416 + 2232271 I e otoGar3.GL873658 2574602 467 + 5252280 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e calJac3.chr14 3494542 0 - 108792865 C a score=967576.000000 s hg38.chr2_KI270769v1_alt 91071 170 + 120616 ACCGAATGGCCAGGGTGTGCCAGGCGGCAAGGGTGGATTTGCT-CCCTGAATG-ATCCATCCAGCTGAATCTT-GAGTCATTCCGCGTTTGCCACGAGGGGCAG--TGTTAGATcagtggtcctcaaagtggggtccccgaagcagcagcaccaggttctcctgggaacttgacg s panTro5.chr2A 3553154 170 + 111504155 ACCGAATGGCCAGGGTGTGCCAGGCGGCAAAGGTGGATTTGCT-CCCTGAATG-ATCCATCCAGCTGAATCTT-GAGTCATTCCGCGTTTGCCACGAGGGGCAG--TGTTAGATcagtggtcctcaaagtggggtccccgaagcagcagcaccaggttctcctgggaacttgacg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3413784 170 + 114371477 ACCGAATGGCCAGGGTGTGCCAGGCGGCAAAGGTGGATTTGCT-CCCTGAATG-ATCCATCCAGCTGAATCTT-GAGTCATTCCGCGTTTGCCACGAGGGGCAG--TGTTAGATcagtggtcctcaaagtggggtccccgaagcagcagcaccaggttctcctgggaacttgacg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 291632 170 + 637652 ACCGAATGGCCAGCGTGTGCTAGGCGGCAAAGGTGGATTTGCT-CCCTGAATG-ATCCATCCAGCTGAATCTT-GAGTCATTCCGCGTTTGCCACGCGGGGCAG--TGTTAGATcagtggtcctcaaagtggggtccccgaagcagcagcaccaggttctcctgggaacttgacg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3088435 171 + 81552678 ACCGGATGGCCAGGGTATGCCAGGCGGCAAAGGTGGATTTGCT-CCCTGAATG-ATCCATCCAGCCGAATCTTGGAGTCATTCCACATTTGCCACAAGAGGCAG--TGTTAGATcagtgatcctcaaagtggggtccccgaagcagcagcgccagggtctcctgggaacttgtcg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3351843 170 + 108979918 ACTGAACGGCCAGGGTGTGCCCGGTGGCAAAGGTGAATTTCCT-CCCTGAATG-ATCCATCCAGCTGAATCTTAGAGTCATTCCGTGTTTGCCACGAG-GGCAG--TGTTAGATcagtggtcctcaaagtggggtctccaaagcagcagtgccagggtctcctgggagcttgtca i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5063981 170 - 111193037 ACTGAACGGCCAGGGTGTGCCCGGTGGCAAAGGTGAATTTCCT-CCCTGAATG-ATCCATCCAGCTGAATCTTAGAGTCATTCCGTGTTTGCCACGAG-GGCAG--TGTTAGATcagtggtcctcaaagtggggtctccaaagcagcagtgccagggtctcctgggagcttgtca i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3455186 170 + 3644372 ACTGAACGGCCAGGGTGTGCCCGGTGGCAAAGGTGAATTTCCT-CCCTGAATG-ATCCATCCAGCTGAATCTTAGAGTCATTCCGTGTTTGCCACGAG-AGCAG--TGTTAGATcagtggtcctcaaagtggggtctccaaagcagcagtgccagggtctcctgggagcttgtca i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3411919 170 - 10304083 ACTGAACGGCCAGGGTGTGCCCGGTGGCAAAGGTGAATTTCCT-CCCTGAGTG-ATCCATCCAGCTGAATCTTGGAGTCATTCCGCGTTTGCCACGAG-GGCAG--TGTTAGATcagtggtcctcaaagtggggtctccaaagcagcagtgccagggtctcctgggaacttgtca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3512642 170 - 107702431 ACTGAACGGCCAAGGTGTGCCCGGTGGCAAAGGTGAATTTCCT-CCCTGAATG-ATCCATCCAGCTGAATCTTGGAGTCATTCCGCGTTTGCCACGAG-GGCAG--TGTTAGATcagtggtcctcaaagtggggtctccaaagcagcagtgccagggtctcctgggaacttgtca i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1043664 170 + 1565135 ACTGAACGGCCAGGGTGTGCCCGGTGGCAAAGGTGAATTTCCT-CCCTGAATG-ATCCATCCAGCTGAATCTTGGAGTCATTCCGCGTTTGCCACGAG-GGCAG--TGTTAGATcagtggtcctcaaagtggggtctccaaagcagcagtgccagggtctcctgggaacttgtca i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3407215 170 - 13651311 ACTGAACGGCCAGGGTGTGCCCGGTGGCAAAGGTGAATTTCCT-CCCTGAATG-ATTCATCCAGCCAAATCTTGGAGTCATTCCGCGTTTGCCACGAG-GGCAG--TGTTAGATcagtggtcctcaaagtggggtctccgaagcagcagcgccagggtctcctgggaacttgtga i colAng1.NW_012118821v1 C 0 I 513 s dasNov3.JH580157 616061 162 + 2232271 ATCGCCTGGGCCGGTCGTGCTGGGCTCATGAGGTGCGTTTCTTCCCCTAAATGCGTCTGTTCAGTCAGGCGCTCGGGTCAGTCTGCACGTGGTGCACG-GGCCTTCTGTTACATCAGCGAGTCTCCAAG-GGCGACCCCAGGACAGCA-----------TCCTGGACACCTGTCA i dasNov3.JH580157 I 1416 C 0 e mm10.chr12 91437717 1525 - 120129022 I e saiBol1.JH378218 3138713 1 - 7082604 I e otoGar3.GL873658 2574602 467 + 5252280 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e calJac3.chr14 3494542 0 - 108792865 C a score=3777653.000000 s hg38.chr2_KI270769v1_alt 91241 692 + 120616 gaaatgcacatcctcagccacatcctctgatcacagaggagtc--aactgctggggcctgggctgggcc--ggcccgacagtgtcgtctgcaccgccctccaggagcttctggtgctcctgcaggtgtgagaacGCATGTCAGACGCCGGAGGCCACAGACAGAATTCCAGTTACACAGCAGGCGTTGGAGCCCATGGGCATC--GCCATCCTGCCTTACACTGCTGGC--CTCTTC--TATGCCCCCTCGAGGATTGTGCCCCCAC-------TTG---TTCTCTCTGCCTG--GAC-CCCTCCTGG----CATGCACCTTCCTAGTCCCTATTCAGTGTCA-CCCCCTGAAGCCTGCCCTCAA-----------------CCCCAGGACAGTGCAG------CCCCGTCCACACTCCCCTTAC-CTCTTGTCCTGGACCCACACAGGC-----TCCGCAGCACCTGCTCCTGGCACGGC----------CCCACAGTTGCAGTACTTGGGCTGGAGCTGCCG-------CCATGAGGT--------CCTCCTTCAAACACCCAGTTCCAGCGTTCCC--------------------------CGGGAAGCTTCCCATGCCATCTTGTCACGTCTTGCAC-----CCAGCACCGAGG---------------G------------------------TGAGGCCCGGCAAAGCA---GAGCTGCAGGGGCTC--AGCTGTGTA-CACCACA-GTTCTTGAGACGCCCACCTGTGTGTC---CTCCCCGA--TCCTGCTCCACAGGTCCAGGCCCAGGCCCAGAGGTAGCCCCTGCGTTCCCGTGGCTTCAGGCA s panTro5.chr2A 3553324 690 + 111504155 gaaatgcacatcctcagccacatcctctgatcacagaggagtcataactgctggggcctgggctgggcc--ggcccgacagtgtcgtctgcacggccctccaggggcttctggtgctcctgcaggtgtgagaacGCATGTCAGACGCCGGAGGCCACAGACAGAATTCCAGTTACACAGCAGGCGTTGGAGCCCGTGGGCATC--GCCATCCTGCCTTACACTGCTGGC--CTCTTC--TATGCCCCCTCGAGGATTGTGCCCCCAC-------TTG------TCTCTGCCTG--GAC-CCCCCCTGG----CATGCACCTTCCTAGTCCCTATTCAGTGTTA-CCCCCTGAAGCCTGCCCTCAA-----------------CCCCAGGACAGTGCAG------CCCCGTCCATACTCCCCTTAC-CTCTTGTCCTGGACCCACACAGGC-----TCCGCAGCACCTGCTCCTGGCACGGC----------CCCACAGTTGCAGTACTTGGGCTGGAGCTGCCG-------CCATGAGGT--------CCTCCTTCAAACACCCAGTTCCAGCGTTCCC--------------------------CGGGAAGCTTCCCATGCCATCTTGTCACGTCTTGCAC-----CCAGCACCGAGG---------------G------------------------TGAGGCCCGGCAAAGCA---GAGCTGCAGGGGCTC--AGCTGTGTA-CACCACA-GTTCTTGAGACGCCCACCTGTGTGTC---CTCCCCGA--TCCTGCTCCACA-GCCCAGGCCCAGGCCCGGAGGTAGCCCCTGCGTTCCCGTGGCTTCAGGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3413954 690 + 114371477 gaaatgcacatcctcagccacatcctctgatcacagaggagtcataactgctggggcctgggctgggcc--ggcccgacagtgtcgtctgcacggccctccaggggcttctggtgctcctgcaggtgtgagaacGCATGTCAGACGCCGGAGGCCACAGACAGAATTCCAGTTACACAGCAGGCGTTGGAGCCCGTGGGCATC--GCCATCCTGCCTTACACTGCTGGC--CTCTTC--TATGCCCCCTCGAGGATTGTGCCCCCAC-------TTG------TCTCTGCCTG--GAC-CCCCCCTGG----CATGCACCTTCCTAGTCCCTATTCAGTGTCA-CCCCCTGAAGCCTGCCCTCAA-----------------CCCCAGGACAGTGCAG------CCCCGTCCATACTCCCCTTAC-CTCTTGTCCTGGACCCACACAGGC-----TCCGCAGCACCTGCTCCTGGCACGGC----------CCCACAGTTGCAGTACTTGGGCTGGAGCTGCCG-------CCATGAGGT--------CCTCCTTCAAACACCCAGTTCCGGCGTTCCC--------------------------CGGGAAGCTTCCCATGCCATCTTGTCACGTCTTGCAC-----CCAGCACCGAGG---------------G------------------------TGAGGCCCGGCAAAGCA---GAGCTGCAGGGGCTC--AGCTGTGTA-CACCACA-GTTCTTGAGACGCCCATCTGTGTGTC---CTCCCCGA--TCCTGCTCCACA-GCCCAGGCCCAGGCCCGGAGGTAGCCCCTGCGTTCCCGTGGCTTCAGGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 291802 681 + 637652 gaaatg------------cacatcctctgatcacagaggagtcataactgctggggcctgggctgggcc--ggcccgacagtgtcgtctgcaccgccctccaggggcttctggtgctcctgaaggtgtgagaacGCATGTCAGACGCCAGAGGCCACAGACAGAATTCCAGTTACACAGCAGGCGTTGGAGCCCATGGGCATC--GCCATCCTGCCTTACACTGCTGGC--CTCTTC--TATG-CCCCTCGAGGACTGTGCCCCCAC-------TTG---TTCTCTCTGCCTG--GAC-CCCTCCTGG----CATGCACCTTCCTAGTCCCTATTCAGTGTCA-CCCCCTGAAGCCTGCCCTCAA-----------------CCCCAGGACAGTGCAG------CCCCGTCCACACTCCCCTTAC-CTCTTGTCCTGGACCCACACAGGC-----TCCGCAGCACCTGCTCCTGGCACGGC----------CCCACAGTTGCAGTACTTGGGCTGGAGCTGCCG-------CCATGAGGT--------CCTCCTTCAAACACCCAGTTCCAGCGTTCCC--------------------------CGGGAAGCTTCCCATGCCATCTTGTCACGTCTTGCAC-----CCAGCACCGAGG---------------G------------------------TGAGGCCCAGCAAAGCA---GAGCTGCAGGGGCTC--AGCTGTGTA-CACCACA-GTTCTTGAGACGCCCACCTGTGTGTC---CTCCCCGA--TCCTGCTCCACATGTCCAGGCCCAGGCCCAGAGGTAGCCCCTGCGTTCCCGTGGCTTCAGGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3088606 683 + 81552678 gaaatgcacgtcct----cacaccctctgatcacagaggagtcagaactgctggggcctgggctgggcc--gggccaacagtgtcgtctgcacggccctccaggggctcctggtgctcctgcaggtgtgagaacGAATGTCAGACGCTGGAGGCCACAGACAGAATTCCAGTTACGCGGCAGGCGTTGGAGTCCGTGGGCATC--GCCGTCCTGCCTTACACTGCCGGC--CTCTTC--TGCGCCCCCTCGAGGACTGTGCCCCCAC-------CTG---TTGTCTCTGCCTG--GAC-CCCTCCTGG----CATGCACCTTCCTAGTCCCTATTCAGTGTCA-CCCCCTGAAGCCTGCCCTCAA-----------------CCCCAGGACAGTGCAG------CCCCATCCACATTCTCTTTAC-CTCTTGCCCTGGACCCACACAGGC-----TCCGTGACACCTGCTCCTGGCACAGC----------CCCACAGTTGCAGTGCATGGGCTGGAGCTGCCG-------CCATGAGGT--------TCTCCTTCAAACACCCAGTTCCAGCATTCTT--------------------------CAGGAAGCTTCCCATGCCATCCTGTCACGTCTTGCAC-----CCAGCACCAAGG---------------G------------------------CGAGGCCCGGCAGAGCA---GAGCTGCAGGGGCTC--AGCTGTGTG-CACCACA-GTTCTTGAGACTCCCGCCTGTGTGTC---CTTCCCAG--T-CTGCTCCACA------GGCCCAGGCCCAGAGGTCGTCCCTGCGTTCCCATGGCTTCAGGCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3352013 677 + 108979918 gaaatgcacatccttaaccccaccctctgatcacagaggagtcagaactgctggggcc-----tgggcc--ggcccaacagtgtcgtctgcacagccctccaggggctcctggtgctcatgcaggtgtgagaaTGCATGTCAGATGCCTGAGGCCACAGACAAAATTCCAATTGCGCAGCAGGCATTGGAGCCCGTGGGCATC--GCTGTCCTGCCTTACACTGCCAGC--CTCTTC--TGCCTCCCCTCGAGGATCGTGCCCCCAC-------CTG---TTGTCTCTGCCTG--GAC-CCCTCCTGG----CATGCACCTTCCCAGTCCCTATTCAGTGTCA-CCCCCTGAAGCCTGCCTTCAA-----------------CCCCAGGAATGCACAG------CCCCATCCATACTCCCCTTAC-CTCTCGCCCTGGACCCACACAGGC-----TCCGTGGCACCTGCTCCTGGCACAGC----------CCCGTAGTTGCAGCGCTTGGGCTGGAGCTGCCG-------CCATGAGGT------------CTTCAAACGCCCAGTTCCAGCGTTCTT---------------------------GGGAAGCTTCCCGTGCCATCCTGTCACACGTTGCAC-----CCAGCACCGAGG---------------G------------------------CAAGGCCCAACAGAGCA---GAGCTGCAGGGGCTC--CGCTGTGT--CACAACA-GTTCTTGAGACGCCCACCCGTGTGTC---CTCCCCAA--TCCTGCTCCACA------GGCGCAGGCCCGGAGGTAGCCCCTGCGTTCCCGTGGCTTCAGACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5064151 677 - 111193037 gaaatgcacatccttaaccccaccctctgatcacagaggagtcagaactgctggggcc-----tgggcc--ggcccaacagtgtcatctgcacagccctccaggggctcctggtgctcatgcaggtgtgagaaTGCATGTCAGACGCCTGAGGCCACAGACAAAATTCCAATTGCGCAGCAGGCATTGGAGCCCGTGGGCATC--GCTGTCCTGCCTTACACTGCCAGC--CTCTTC--TGCCTCCCCTCGAGGATCGTGCCCTCAC-------CTG---TTGTCTCTGCCTG--GAC-CCCTCCTGG----CATGCACCTTCCCAGCCCCTATTCAGTGTCA-CCCCCTGAAGCCTGCCTTCAA-----------------CCCCAGGAATGCACAG------CCCCGTCCATACTCCCCTTAC-CTCTTGCCCTGGACCCACACAGGC-----TCCGTGGCACCTGCTCCTGGCACAGC----------CCCGTAGTTGCAGCGCTTGGGCTGGAGCTGCCG-------CCATGAGGT------------CTTCAAACACCCAGTTCCAGCGTTCTT---------------------------GGGAAGCTTCCCGTGCCATCCTGTCACACGTTGCAC-----CCAGCACCGAGG---------------G------------------------CAAGGCCCAACAGAGCA---GAGCTGCAGGGGCTC--CGCTGTGT--CACAACA-GTTCTTGAGACGCCCACCCGTGTGTC---CTCCCCAA--TCCTGCTCCACA------GGCGCAGGCCCAGAGGTAGCCCCTGCGTTCCCGTGGCTTCAGACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3455356 663 + 3644372 gaaatgcacatccttaaccccaccctctgatcacagaggagtcagaactgctggggcc-----tgggcc--ggcccaacagtgtcgtctgcacagccctccaggggctcctggtgctcatgcaggtgtgagaaTGCATGTCAGACGCCTGAGGCCACAGACAAAATTCCGATTGCGCAGCAGGCATTGGAGCCCGTGGGCATC--GCTGTCCTGCCTTACACTGCCAGC--CTCTTC--TGCCTCCCCTCGAGGATCGTGCCCCCAC-------CTG---TTGTCTCTGCCTG--GAC-CCCTCCTGG----CATGCACCTTCCCAGTCCCTATTCAGTGTCA-CCCCCTGAAGCCTGCCTTCAA-----------------CCCCAGGAATGCACAG------CCCCGTCCATACTCCCCTTAC-CTCTCACCCTGGACCCACACAGGC-----TCCGTGGCATCT------------GC----------CCCGTAGTTGCAGCGCTTGGGCTGGAGCTGCCG-------CCATGAGGT------------CTTCAAACGCCCAGTTCCAGCGTTCTT---------------------------GGGAAGCTTCCCGTGCCATCCTGTCACACGTTGCAT-----CCAGCACCGAGG---------------G------------------------CAAGGCCCAACAGAGCA---GAGCTGCAGGGGCTC--CGCTGTGT--CACAACA-GTTCTTGAGACGCCCACCCGTGTGTC---CTCCCCAA--TCCTG--CCACA------GGCACAGGCCCGGAGGTAGCCCCTGCGTTCCCGTGGCTTCAGACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3412089 676 - 10304083 aaaatgcacat-cttaaccccaccctctgatcacagaggagtcagaactgctggggcc-----tgggcc--ggcccaacagtgtcgtctgcacagccctccaggggctcctggtgctcatgcaggtgtgagaaTGCATGTCAGACGCCTGAGGCCACAGACAAAATTCCGATTGCGCAGCAGGCATTGGAGCCCGTGGGCATC--GCTGTCCTGCCTTACACTGCCAGC--CTCTTC--TGCCTCCCCTTGAGGATCGTGCCCCCAC-------CTG---TTGTCTCTGCCTG--GAC-CCCTCCTGG----CATGCACCTTCCCAGTCCCTGTTCAGTGTCA-CCCCCTGAAGCCTGCCTTCAA-----------------CCCCAGGAATGCACAG------CCCCGTCCATACTCCCCTTAC-CTCTCGCCCTGGACCCACACAGGC-----TCCGTGGCACCTGCTCCTGGCACAGC----------CCCGTAGTTGCAGCGCTCGGGCTGGAGCTGCCA-------CCATGAGGT------------CTTCAAACGCCCAGTTCCAGCGTTCTT---------------------------GGGAAGCTTCCCGTGCCATCCTGTCACACGTTGCAC-----CCAGCACCGAGA---------------G------------------------CAAGGCCCAACAGAACA---GAGCTGCAGGGGCTC--AGCTGGGT--CACAACA-GTTCTTGAGACGCCCACCCGTGTGTC---CTCCCCAA--TCCTGCTCCACA------GGCACAGGCCCGGAGGTAGCCCCTGCGTTCCCATGGCTTCAGACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3512812 675 - 107702431 gaaatgcacatccttaaccccaccctctgatcacagaggagtcagaactgctggggcc------gggcc--gg-ccaacagtgtcgtctgcacagccctccaggggctcctggtgctcatgcaggtgtgaggaTGCATGTCAGACGCCTGAGGCCACAGACAAAATTCCGATTGCGCAGCAGGCATTGGAGTCCGTGGGCATC--GCTGTCCTGCCTTACACTGCCAGC--CTCTTC--TGCCTCCCCTTGAGGATCGTGCCCCCAC-------CTG---TTGTCTCTGCCTG--GAC-CCCTCCTGG----CATGCACCTTCCCAGTCCCTATTCACTGTCA-CCCCCTGAAGCCTGCCTTCAA-----------------CCCCAGGAATGCACAG------CCCCGTCCATACTCCCCTTAC-CTCTCGCCCTGGACCCACACAGGC-----TCCGTGGCGCCTGCTCCTGGCACAGC----------CCCGTAGTTGCAGCGCTCAGGCTGGAGCTGCCG-------CCATGAGGT------------CTTCAAACGCCCAGTTCCAGCGTTCTT---------------------------GGGAAGCTTCCCGTGCCATCCTGTCACACGTTGCAC-----CCAGCACCGAGG---------------G------------------------CAAGGCCCAACAGAGCA---GAGCTGCAGGGGTTC--AGCTGTGT--CACAACA-GTTCTTGAGACGCCCACCCGTGTGTC---CTCTCTAA--TCCTGCTCCACA------GGCACAGGCCCGGAGATAGCCGCTGCGTTCCCGTGGCTTCAGACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1043834 677 + 1565135 aaaatgcacatccttaaccccaccctctgatcacagaggagtcagaactgctggggcc-----tgggcc--ggcccaacagtgtcgtctgcacagccctccaggggctcctggtgctcatgcaggtgtgagaaTGCATGTCAGACGCCTGAGGCCACAGACAAAATTCCGATTGCGCAGCAGGCATTGGAGCCCGTGGGCATC--GCTGTCCTGCCTTACACTGCCAGC--CTCTTC--TGCCTCCCCTTGAGGATCATGCCCCCAC-------CTG---TTGTCTCTGCCTG--GAC-CCCTCCTGG----CATGCACCTTCCCAGTCCCTATTCAGTGTCA-CCCCCTGAAGCCTGCCTTCAA-----------------CCCCAGGAATGCACAG------CCCCGTCCATACTCCCCTTAC-CTCTCGCCCTGGACCCACACAGGC-----TCCGTGGCACCTGCTCCTGGCACAGC----------CCCGTAGTTGCAGCGTTTGGGCTGGAGCTGCCG-------CCATGAGGT------------CTTCAAACGCCCAGTTCCAGCGTTCTT---------------------------GGGAAGCTTCCCGTGCCATCCTGTCACACGTTGCAC-----CCAGCACCGAGG---------------G------------------------CAAGGCCCAACAGAGCA---GAGCTGCAGGGGCTC--CGCTGGGT--CACAACA-GTTCTTGAGACGCCCACCCGTGTGTC---CTCCCCAA--TCCTGCTCCACA------GGTGCAGGCCCGGAGGTAGCCCCTGCGTTCCCGTGGCTTCAGACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3407898 676 - 13651311 gaaatgcacatccttaaccccaccctctgatctcagaggcgtcagaactgctggggcg-----tgggct--ggcccaacagtgtcatctgtacggccctccaagggctcctggtgctcatgcag--gtgagaaTGCATGTCAAACGCCTGAGGCCACAGACAAAATTCCGATTGTGCAGCAGGCATTGGAGCCCGTGGGCATC--GCCATCCTGCCTTACACTGCCAGC--CTCTTC--TGCCTCCCCTCGAGGATCGTGCCCCCAC-------CTG---TTGTCTCTGCCTG--GAC-CCCTCCTGG----CATGCACCTTCCCAGTCCCTATTCAGTGTCACCCCCCTGAAGCCTGCCTTCAA-----------------CCCCAGGAATGCACAG------CCCCGTCCATACTCCCCTTAC-CTCTCGCCCTGGACCCACACAGGC-----TCCGTGGCACCTGCTCCTGGCACAGC----------CCCGTAGTCGTAGTGCTCGGGCTGGAGCTGCCG-------CCATGAAGT------------CTTCAAACGCCCAGTTCCAGCGTTCTT---------------------------GGGAAGCTTCCCGTGCCATCCTGTCACGCGTTGCAC-----CCAGCACCGAGG---------------G------------------------CAAGGCCCAACAGAGCC---GAGCTGCAGGGGCTC--AGTTGTGT--CACAACA-GTTCTTGAGACGCCCACCCGTGTGTC---CTCCCCAA--TTCTGCTCCACA------GGCGCAGGCCCGGAGGTAGCCCCTGCGTTCCCGTGGCTTCAGACA i colAng1.NW_012118821v1 I 513 C 0 s otoGar3.GL873658 2575069 623 + 5252280 gaaatgcacatcctcagccctacccc---agcccacagaattt--agctgctagggcc-----tgggcttaggccca-----gggggttgcacagtcttccagagccttctggccctcgtgcaagtgtgagaa-gca-------------AGGACTCAGG---------------GCGGCAGACCTTGGAGCCCCTGGGGCTT--GCAGCCCAGCCTTGTGCTGTCGGCATTTCTCC--TGTGTCCCCTCGAAGGCCCTGCCCCCAC-------CTGTCGTTGTCTCTGCCTG--GATGCCCTACCATACCCCATGCATCCTTCCAG--CCTGTCCAATATTG-CCCCC--AAAGCCACCTCCTG-----------------CCC---------GCAC------TCCCCTTC-TGCTCTCCTTGTGGTCTGACCTTAGGACTTCCCAGGT-----GCCGTTGCACCTGCCCACCCCACAGCCTTCACACAACCCACAGGTGTCAT-CTCACACTGGCTCTGC------------------------------CTTC------------------------------------------------------AGCCTCCCTAGCCATCCCAACATGCTGTGCACAGACTCCAGGGTCTGTG---------------GAGCAGATGTGCAGGGACTGGGACTCCAGGTCCAGCAGAGCA---GGTGTGCAGGGCCCTGAGGTTGTGG-----GTCA-GTTTCTGAGAGGCCAGCTTGCATGTCATGCTCTAGAG--TCTGGCTCCATA------GGCACCGG----------------GCTCTGCCACGGCTTTAGGCT i otoGar3.GL873658 I 467 C 0 s dasNov3.JH580157 616223 662 + 2232271 GAAATGCAC-----------------TTGATCAT----------------------CC-----TACGCC--CGCCCA-----------------GCCCTCCAGGAGATTCTGACGCC------AGCGGGAGAACCC------------------------------CCCACCTGGGCAG-------TGGCGCCCCTAGGTGCCTGGCCTCTCAGCCTTCTCCCTCTCGT--TGTTCCAGTGTGTCATCTTGA------TACCCCCTCTCCAGCGTTG---CTGTCGCTGCCGGAAGAC-CCTTCTAGT----GTTGCATCGTTCAGATCTCT-TGAAATCTTG-CCC--------CTGCCTTCAAGTTTCGCTTCTCTGACTCCCCCGGGCAGGACTGGGTGCTCCCTGTCC-CATTCTGCTGCA-CCCCCGTGATGGCCCTTTGCTGTCTGACTTCCCAGGCATCGCTTCCAAAC---GC----------CCCACAGCTGC---GCCCTGTCTAGAACAGCCTTCGGCCCCCCTGGGGAACGCCACCTCCTCCTCCGACAGCCCATTCCACTGCTTCCACCTCTGAACACTGACCTCCCCAGGTCGCCCTGCCCTCCACGCCATCCCATCATGCTGTGCCC-----CTAGGAGCTAAGTACAGCGACGCATACG------------------------CGGTGCTCAGGATAGAACACGCGGAGAAAGTGCTC--AGGTGAGCAGCAGGGCACACTCTTCAGACGCTAATGTGTGT-TT---CTCCTTGACTTTTTGCTCCACC------TGCCCAGGCACACAGC---CCTTTGCGTCTCCTTTGCTTCAGGGC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91437717 1525 - 120129022 I e saiBol1.JH378218 3138713 1 - 7082604 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e calJac3.chr14 3494542 0 - 108792865 C a score=1150164.000000 s hg38.chr2_KI270769v1_alt 91933 183 + 120616 CACGTGTGCAGACATGACGCCGAGAACACCGGCTTTGCCACCAAGGACAGAAGACAGTCTGCCCCAC-----CCGGGGTCACCTGCAGGTCCTGCTCTGACCAGGGTCCAGGCCCTGATTCCGGGGATGCGACAGCACCCAGAATGTCCTGCC--T---TGTGTGGCACGTGGGACCGGGGACTCGGGCCCCA s panTro5.chr2A 3554014 183 + 111504155 CACGTGTGCAGACATGACGCCGAGAACACCGGCTTTGCCACCAAGGACAGAAGACAGTCTGCCCCAC-----CCGGGGTCACCTGCAGGTCCTGCTCTGACCAGGGTCCAGGCCCTGATTCCGGGGATGCGACAGCACCCAGAATGTCCTGCC--T---TGTGTGGCACGTGGGACCGGGGACTCGGGCCCCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3414644 183 + 114371477 CACGTGTGCAGACATGACGCCGAGAACACCGGCTTTGCCACCAAGGACAGAAGACAGTCTGCCCCAC-----CCGGGGTCACCTGCAGGTCCTGCTCTGACCAGGGTCCAGGCCCTGATTCCGGGGATGCGACAGCACCCAGAATGTCCTGCC--T---TGTGTGGCACGTGGGACCGGGGACTCGGGCCCCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 292483 183 + 637652 CACGTGTGCAGACATGACGCCGAGAACACCGGCTTTGCCACCAAGGACAGAAGACAGTCTGCCCCAC-----CCGGGATCACCTGCAGGTCCTGCTCTGACCAGGGTCCAGGTCCTGATTCCGGGGATGCGACAGCACCCAGAATGTCCTGCC--T---TGTGTGGCACGTGGGACTGGGGACTCGGGCCCCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3089289 181 + 81552678 CATATGTGCAGACATGACGCCAAGAACGCCGGCTTTGCCACCAAGGACAGAAGACAGTCTGCCCCAC-----CCGGGGTCACCTGCAGGTCCTGCTCTGACCAGGGTCCAGGCC--GATTCCAGGGATGCAACAGCACCCAGAATGTCCTGCC--T---TGTGTGGCACATGGGACCGGGGACTCGGGCCCCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3352690 183 + 108979918 CATACGTGCAGACATGATGCCAAGAACACCGGCTTTGCCACCAAGGACAGAAGACAGTCTGCCCCAC-----CCGGGGTCGTCTGCAGGTCCTGCTCTGACCAGGGTCCAGGCCCTGATTCCGGGGATGCGACAGGACCCAGAATGTCCTGCC--T---TGTGAGGCATGTGGGACCGGGGAGTCGGGCCCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5064828 182 - 111193037 CATACGTGCAGACATGACGCCAAGAACACCGGCTTTGCCACCAAGGACAGAAGACAGTCTGCCCCAC-----CCAGGGTTGTCTGCAGGTCCTGCTCTGACCAGGGTCCAGGCCCTGATTCCGGGGATGCGACAGGACCCAGAATGTCCTGCC--T---TGTGAGGCATGTGGGACC-GGGAGTCGGGCCCCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3456019 183 + 3644372 CATACGTGCAGACATGACGCCAAGAACACCGGCTTTGCCACCAAGGACAGAAGACAGTCTGCCCCAC-----CCGGGGTCGTCTGCAGGTCCTGCTCTGACCAGGGTCCAGGCCCTGATTCCGGGGATGCGACAGGACCCAGAATGTCCTGCC--T---TGTGAGGCATGTGGGACCGGGGAGTCGGGCCCCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3412765 183 - 10304083 CACACGTGCAGACATGACGCCAAGAACACCGGCTTTGCCACCAAGGACAGAACACAGTCTGCCCCAC-----CCGGGGTCGTCTGCAGGTCCTGCTCTGACCAGGGTCCGGGCCCTGATTCCGGGGATGAGACAGGACCCAGAATGTCCTGCC--T---TGTGAGGCATGTGGGACCGGCGAGTCGGGCCCCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3513487 183 - 107702431 CATATGTGCAGACGTGACGCCAAGAACGCCGGCTTTGCCACCAAGGACAGAAGACAGTCTGCCCCAC-----CCGGGGTCGTCTGCAGATCCTGCTCTGACCAGGGTCCGGGCCCTGATTCCGGGGATGCGACAGGACCCAGAATGTCCTGCC--T---TGTGAGGCATGTGGGACCGGGGAGTCGGGCCCCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1044511 183 + 1565135 CATACGTGCAGACATGACGCCAAGAACACCGGCTTTGCCACCAAGGACAGAAGACAGTCTGCCCCAC-----CCGGAGTCGTCTGCAGGTCCTGCTCTGACCAGGGTCCAGGCCCTGATTCCGGGGATGCGACAGGACCCAGAATGTCCTGCC--T---TGTGAGGCATGTGGGACCGGGGAGTCGGGCCCCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3408574 181 - 13651311 C--ACGTGCAGACGTGACGCCAAGAACTCGGGCTTTGCCACCAAGGACAGAAGACAGTCTGCCCCAC-----CCGGGGTCGTCTGCAGGTCCTGCTCTGACCAGGGTCCAGGCCCTGATTCCGGGGATGTGACAGGACCCAGAATGTCCTGCC--T---CGTGAGGCATGTGGGACTGGGGAGTCGGGCCCCA i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2575692 179 + 5252280 TACCCACACAAAGATGTTGTCAAGAACTC---CTTTGCCAGCAAGGACAGAAGAGAAGCTGCCTCTG-----CTGGGGCTGTCTGGAGGTGCTACTTTGCCCAGAATCTGGGCCCTGACTCT-GTGACGAGACAAGACCCAGAATGTTCTTCT--G---GATGGTGAGCCTGGGGGGCGGCACTCAGGCCCCC i otoGar3.GL873658 C 0 I 1 s mm10.chr12 91439242 150 - 120129022 CATGTGGG-AGAGGCGGGGCCAAGTGCACTGTCACTGCCACCAAGGGCAGAAGACAGTTGTTCACA----------------------GTCTTGC--AGAACAGAAACAAGGCC-----TAAGGGGCTGAGGCAGAACAC-------CTTGCCTGT---TTTGGGCCA---GGGATGTGAGAGCTAAGCCACA i mm10.chr12 I 1525 I 1 s dasNov3.JH580157 616885 164 + 2232271 TGTGTAAAAAGAGGTGATGCTAGGAACGTC-------TCTCCGAGGGCA-AGGACAAAGAGGCCAAAGGAGGCTGGAACGTTCTGCAGGTTTTGCTTTTACCA-------GGCTCTGCT-----GGATGGAGCTGCA-------GGTCTAGCC--CAAGAAGGTGGCAAGTGGGTCAGCAGCCTCAGCCCTTG i dasNov3.JH580157 C 0 C 0 e saiBol1.JH378218 3138713 1 - 7082604 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e calJac3.chr14 3494542 0 - 108792865 C a score=999297.000000 s hg38.chr2_KI270769v1_alt 92116 190 + 120616 GGGCTCCCAACCCTGGCTGTGGAG--AGTGGGTGGCTCCGCTGCTGGTCGGGGG-CACTGTGTGGGCAGACAGCGTGCCA-GTGGCCA-CAGGATGTCCTGACAGC-----AGAGGCGCTAAACA--CTCCA-GGAGCGCCTCAGCCCCAAGCTCTGGTTCCACCCCTTGCGGGTGAGGGAGGCCCAA-TGA-CAGCC-------AGA--------CTC-C- s panTro5.chr2A 3554197 190 + 111504155 GGGCTCCCAACCCTGGCTGTGGAG--AGTGGGTGGCTCCGCTGCTGGTCGGGGG-CTCTGTGTGGGAAGACAGCGTGCCA-GTGGCCA-CAGGATGTCCTGACAGC-----AGAGGCGCTAAACA--CTCCA-GGAGCGCCTCAGCCCCAAGCTCTGGTTCCACCCCTTGCGGGTGAGGGCGGCCCAA-TAA-CAGCC-------ACA--------CTC-C- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3414827 190 + 114371477 GGGCTCCCAACCCTGGCTGTGGAG--AGTGGGTGGCTCCGCTGCTGGTCGGGGG-CTCTGTGTGGGAAGACAGCGTGCCA-GTGGCCA-CAGGATGTCCTGACAGC-----AGAGGCGCTAAACA--CTCCA-GGAGCGCCTCAGCCCCAAGCTCTGGTTCCACCCCTTGCgggtgagggcggcccaa-taa-cagcc-------aca--------ctc-c- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 292666 190 + 637652 GGGCTCCCAACCCTGGCTGTGGAG--AGTGGGTGGCTCCGCTGCTGGTCGGGGG-CACTGTATGGGCAGACAGCGTGCCA-GTGGCCA-CAGGATGTCCAGACAGC-----AGAGGCGCTAAACA--CTCCA-GGAGCGCCTCAGCCGCAAGCTCTGGTTCCACCCCTTGCGGGTGAGGGAGGCCCAA-TAA-CAGCC-------AGA--------CTC-C- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3089470 189 + 81552678 GGGCTCCCAACCCTGGCTGTGGAG--AGAGGGTGGCTCCGCTGCTGGTCGAGGG-CACTGTGTGGGCAGACAGCGTGCCA-GTGGCCA-CAGGATGTCCTGACAGC-----AGAGGCACTAAACA--CTCCA-GGAGCGCCTGAGCGCCAAGCTCTGGTT-CATCCCTTGCAAGTgagggagacccag-taa-cagcc-------aga--------ctc-c- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3352873 189 + 108979918 GGGCTCCCAGCCCTGGCTGTGGAG--AGAGGGTGGCTGTGCTGCTGGTCGGGGG-CACTGTGTGGGCAGACAGCGTGCCA-GTGGCCA-CAGGATGTCCTGATAGC-----AGAGGCACTAAACA--CTCCA-GCAGCACCTCAGCCCCGAGCTCTGGTTCCATCCCTTGTAGGTG-GGGAGGCCCAG-TAA-CAGCC-------AGG--------CTC-C- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5065010 188 - 111193037 GGGCTCCCAGCCCTGGCTGTGGAG--AGAGGGTGGCTGTGCTGCTGGTCGGGGG-CACTGTGTGGGCAGACAG-GTGCCA-GTGGCCA-CAGGATGTCCTGATAGC-----AGAGGCACTAAACA--CTCCA-GCAGCACCTCAGCCCCGAGCTCTGGTTCCATCCCTTGTAGGTG-GGGAGGCCCAG-TAA-CAGCC-------AGG--------CTC-C- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3456202 189 + 3644372 GGGCTCCCAGCCCTGGCTGTGGAG--AGAGGGTGGCTGTGCTGCTGGTCGGGGG-CACTGTGTGGGCAGACAGCGTGCCA-GTGGCCA-CAGGATGTCCTGATAGC-----AGAGGCACTAAACA--CTCCA-GCAGCACCTCAGCCCCGAGCTCTGGTTCCATCCCTTGTAGGTG-GGGAGGCCCAG-TAA-CAGCC-------AGG--------CTC-C- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3412948 191 - 10304083 GGGCTCCCAGCCCTGGCTGTGGAG--AGAGGGTGGCTGTGCTGCTGGTCGGGGG-CACTGTGTGGGCAGACAGCGTGCCA-GTGGCCA-CAGGATGTCCTGACAGC-----AGAGGCACTAAACA--CTCCA-GCAGCGCCTCAGCCCCGAGCTCTGGTTCCATCCCTTGTAGGTG-GGGAGGCCCAGTTAA-CAGCC-------AGA--------CTCGC- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3513670 189 - 107702431 GGGCTCCCAGCCCCGGCTGTGGAG--AGAGGGTGGCTGTGCTGCTGGTCAGGGG-CACTGTGTGGGCAGACAGCGTGCCA-GTGGCCA-CAGGATGTCCTGATAGC-----AGAGGCACTAAACA--CTCCA-GCAGCGCCTCAGCCCCGAGCTGTGGTTCCATCCCTTGCAGGTG-GGGAGGCCCAG-TAA-CAGCC-------AGA--------CTC-C- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1044694 189 + 1565135 GGGCTCCCAGCCCTGGCTGTGGAG--AGAGGGTGGCTGTGCTGCTGGTTGGGGG-CACTGTGTGGGCAGACAGCGTGCCA-GTGGCCA-CAGGATGTCCTGATAGC-----AGAGGCACTAAACA--CTCCA-GCAGCGCCTCAGCCCCGAGCTCTGGTTCCATCCCTTGTAGGTG-GGGAGGCCCAG-TAA-CAGCC-------AGG--------CTC-C- i manLeu1.NW_012104432v1 C 0 C 0 s otoGar3.GL873658 2575872 185 + 5252280 CATTTCTCAGTCCTGGCCCTGGAAGCAGAGGGT-----CCCTGCTGGTCTGGGG-CACTGTGTG------------GTCA-GTGGCCA-CGGGATGTCCTGACAGCTGTCTAGAGAC-CAACACC--CTCCAGGCAGCATCTGAGC-CTGAGTTTTGTTTTCATCCTGTGCAGGTG-GAGGGGCCCA--TGA-CAGCC-------AGAACTGAATTCTC-C- i otoGar3.GL873658 I 1 C 0 s mm10.chr12 91439393 166 - 120129022 GGGTCCTCGGCTCTGGCCATTCCA--GCAGATTCACCCTGCTCC---CCTCGGG-CACCACATCAACAGACGGCATGCCA-GGAGCCA-CTGGATGTCCAGGCAGC-----AGA-----------------A-ACAGTATC------CTAAGGTATGGTCTCACATC-TGCAGGTAAGGTCAACCCAG-TGATCACCC-------ACA--------TTC-C- i mm10.chr12 I 1 I 811 s dasNov3.JH580157 617049 186 + 2232271 ---------GCCCCAGAAGCCAAG--A----GTTGCTACCCTGCACTTCTAGGGCCACTGCGTGGTCAAGTAGTATGCCAGGGGGCCACCAGGAGGCTCTGGGAAC-----AGCTatgttcaacattctcca-ggaaa----cacccctggattctgatttcatcccttggaggtgaggaaggcccag-taa-caacccacactgact--------ttc-cc i dasNov3.JH580157 C 0 C 0 e saiBol1.JH378218 3138713 1 - 7082604 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e calJac3.chr14 3494542 0 - 108792865 C e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=535297.000000 s hg38.chr2_KI270769v1_alt 92306 103 + 120616 ATCAGTTCAGAGGC-AGGGG-CTAGAGATGGATTTAATTCAACTT---AAAAAGAAATACAAG-----AATGGACCTTTTCTGCAGTCCTGAGGGAGTGG-ACAGGTTGCGTGC s panTro5.chr2A 3554387 103 + 111504155 ATCAGTTCAGAGGC-AGGGG-CTAGAGATGGATTTAATTCAACTT---AAAAAGAAATACAAG-----AATGGACCTTTTCTGCAGTCCTGAGGGAGTGG-ACAGGTTGCGTGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415017 103 + 114371477 atcagttcagaggc-agggg-ctagagatggatttaattcaactt---aaaaagaaatacaag-----aatggaccttttctgcagtcctgagggagtgg-aCAGGTTGCGTGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 292856 103 + 637652 ATCAGTTCAGAGGC-AGGGG-CTAGAGATGGATTTAATTCAACTT---AAAAAGAAATACAAG-----AATGGACCTTTTCTGCAGTCCTGAGGGAGTGG-ACAGGTTGCGTGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3089659 98 + 81552678 atcagttcagaggc-agggg-ctagagacggatttaattcaactt---aa----aaatacaag-----aatggaccttgtctgcagtcctgagggagtgg-aCAGG-TGCGTGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353062 103 + 108979918 ATCAGTTCCGAGGC-AGGGA-CTAGAGATGGATTTAGTTCAACTT---AAAAAGAAATACAAG-----AATGGACCTTTTCTGCCGTCCTGAGGGTGCGG-ACAGGTTGCGTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5065198 103 - 111193037 ATCAGTTCCGAGGC-AGGGA-CTAGAGATGGATTTAGTTCAACTT---AAAAAGAAATACAAG-----AATGGACCTTTTCTGCCGTCCTGAGGGTGCGG-ACAGGTTGCGTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3456391 103 + 3644372 ATCAGTGCCGAGGC-AGGGA-CTAGAGATGGATTTAGTTCAACTT---AAAAAGAAATACAAG-----AATGGACCTTTTCTGCCGTCCTGAGGGTGCGG-ACAGGTTGCGTGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413139 103 - 10304083 ATCAGTTCCGAGGC-AGGGA-CTAGAGATGGATTTAATTCAACTT---AGAAAGAAATACAAG-----AATGGACCTTTTCTGCCGTCCTGAGGGTGTGG-ACAGGTTGCGTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3513859 103 - 107702431 ATCAGTTCCGAGGC-AGGGA-CTAGAGATGGATTTAGTTCAACTT---AAAAAGAAATACAAG-----AATGGACCTTTTCTGCCGTCCTGAGGGTGTGG-ACAGGTTGTGTGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1044883 108 + 1565135 ATCAGTTCCAAGGC-AGGGA-CTAGAGATGGATTTAATTCAACTT---AGAAAGAAATACAAGAATACAATGGACCTTTTCTGCCGTTCTGAGGGTGTGG-ACAGGTTGCGTGG i manLeu1.NW_012104432v1 C 0 C 0 s otoGar3.GL873658 2576057 98 + 5252280 ACCAAGTCACAGGCAAAAGG-CTAGAGATAGATTTTATCTGACCT---AAAAG-------AAC-----AATGAGTATTGCCTGCAGTTCTGAGGCTGGGGCCCAGGGTCTGTGC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 617235 108 + 2232271 acaagtgcagagaa-aggggactagagtgggatttaatttgactttaaaaaaaaaaatagaat-----aatggatatttcttgcaatcctgagattgtgacccaagaGCTGTTC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e saiBol1.JH378218 3138713 1 - 7082604 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e calJac3.chr14 3494542 0 - 108792865 C e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=306302.000000 s hg38.chr2_KI270769v1_alt 92409 75 + 120616 GTGCTCTGACGGTGGGATC--CAGACCCCCTCCTCTC-CTGCGTTGAAGGTGCCACCGGGCCTCATCCCCAGCCACAT----- s panTro5.chr2A 3554490 70 + 111504155 GTGCTCTGACGGTGGGATC--CAGACCCCCTCATCTC-CTGCGTTGAAGGTGCCACTGGGCCTCATCCCCAGC---------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415120 70 + 114371477 GTGCTCTGACGGTGGGATC--CAGACCCCCTCATCTC-CTGCGTTGAAGGTGCCACTGGGCCTCATCCCCAGC---------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 292959 70 + 637652 GTGCTCTGACGGTGGGATC--CAGACCCCCTCATCTC-CTGCATTGAAGGTGCCACCGGGCCTCATCCCCAGC---------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3089757 70 + 81552678 ATGCTCCGATGGTGGGATC--CAGACCCCCTCATCTC-CTGCTTTGGAGGTGCCACCAGGCCTCATCCCGAGC---------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353165 70 + 108979918 GTGCTCCGACGGTGGGATC--CAGACCCCCTCATCTC-CTGCGTTGGAGTTGCCAGCGGGCCTCACCCCCAGC---------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5065301 70 - 111193037 GTGCTCCGACGGTGGGATC--CAGACCCCCTCATCTC-CTGCGCTGGAGTTGCCAGCGGGCCTCACCCCCAGC---------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3456494 70 + 3644372 CTGCTCCGACGGTGGGATC--CAGACCCCCTCATCTC-CTGTGTTGGAGTTGCCAGCGGGCCTCACCCCCAGC---------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413242 69 - 10304083 GTGCTCCGACGGTGGGATC--CAGA-CCCCTCATCTC-CTGCGTTGGAGTTGCCACCGGGCCTCACCCCCAGC---------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3513962 70 - 107702431 GTGCTCCGACGGTGGGATC--CAGACCCCCTCATCTC-CTGCGTTGGAGTTGCCACCGGGCCTCACCCCCAGC---------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1044991 69 + 1565135 GTGCTCCGACGGTGGGATC--CAGA-CCCCTCATCTC-CTGCGTTGGAGTTGCCACCGGGCCTCACCCCCAGC---------- i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3494542 66 - 108792865 GTGCCCTGACGGTGGGCGC--CAGGCCTC--CATCGC-C-ACGGGGGAGCTGCTACCCGCCTCAC-CCCCGGC---------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138714 49 - 7082604 GTGCCCTGACGGTGGGCG-----------------------CGGGGGAGCTGCTACCTGGCCTCA-CCCCGGC---------- i saiBol1.JH378218 I 1 C 0 s otoGar3.GL873658 2576155 49 + 5252280 CCACTCACGTGGGTGATGT--TGGGCCTCTGCCTCCCGCTGTGCTAGAGGC-------------------------------- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 617343 68 + 2232271 TCACGCAAATGGTTAGTTTGGCAG------TCATCAC-CTCCATGAGAAGTATTGTC---CCTCTGCCTTAGA-----TTTGC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e cebCap1.NW_016107454v1 624804 136 + 5243153 I e aotNan1.NW_018509326v1 3367904 84 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=832155.000000 s hg38.chr2_KI270769v1_alt 92484 96 + 120616 CACAT-CCtgagcct-----cttacaggcaggccccgaggtcctttcacctttctcttctctccagtgcttggtgcattttcaaactcagtacctttctttt s panTro5.chr2A 3554560 96 + 111504155 CACAT-CCTGAGCCT-----CTTACAGGCAGGCCCCGAGGTCCTCTCACCTTTCTCTTCTCTCCAGTGCTTGGTGCATTTTCAAACTCAGTACCTTTCTTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415190 96 + 114371477 CACAT-CCTGAGCCT-----CTTACAGGCAGGCCCCGAGGTCCTCTCACCTTTCTCTTCTCTCCAGTGCTTGGTGCATTTTCAAACTCAGTACCTTTCTTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 293029 96 + 637652 CACAT-CCTGAGCCT-----CTTACAGGCAGGCCCCGAGGTCCTTTCACCTTTCTCTTCTCTCCAGTGCTTGGTGCGTTTTCAAACTCAGTACCTTTCTTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3089827 84 + 81552678 -------------CT-----CTTACAGGCAGGCCCCGAGGTCCTTTCACCTTTCTCTTCTCTCCAGTGCTTGGTGCATTTTCAAACTCAGTACCTTTCTTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353235 91 + 108979918 CACAT-CCTGAGCCT-----CTTACAGGC-AGCCCCGAGGTCCTCTCACCTT----TTCTCTCCAGTGCTTGTTGCATTTTCAAACTCAGTAGCTTTCTTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5065371 91 - 111193037 CACAT-CCTGAGCCT-----CTTACAGGC-AGCCCCGAGGTCCTCTCACCTT----TTCTCTCCAGTGCTTGGTGCATTTTCAAACTCAGTAGCTTTCTTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3456564 91 + 3644372 CACAT-CCTGAGCCT-----CTTACAGGC-AGCCCCGAGGTCCTCTCACCTT----TTCTCTCCAGTGCTTGGTGCATTTTCAAACTCACTAGCTTTCTTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413311 91 - 10304083 CACAT-CCTGAGCCT-----CTTACAGGC-GGCCCCGAGGTCCTCTCACCTT----TTCTCTCCAGTGCTTGGTGCATTTTCAAACTCAGTAGCTTTCTTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514032 91 - 107702431 CACAT-CCTGAGCCT-----CTTACAGGC-GGCCCCGAGGTCCTCTCACCTT----TCCTCTCCAGTGCTTGGTGCATTTTCAAACTCAGTAGCTTTCTTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045060 91 + 1565135 CACAT-CCTGAGCCT-----CTTACAGGC-GGCCCCGAGGTCCTCTCACCTT----TTCTCTCCAGTGCTTGGTGCATTTTCAAACTCAGTAGCTTTCTTTT i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3494608 94 - 108792865 CACAC-CTTGAGCCT-----CTTACAGGC-AGCCCCGA-GGTCTTTCGCCTTTGTCTTCTCTCCAGTACTTGGTGCATTTTCAAACACAGTACCTTTCCTCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138763 95 - 7082604 CACAC-CTGGAGCCT-----CTTACAGGC-AGCCCCGAGGGCCCTTCGCCTTCCTCTTCTCTCCAGTGCTTGGTGCATTTGCAGACACAGTACTTTTCCTTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 624940 95 + 5243153 CACAC-CTTGAGCCT-----CTTACAGGC-AGCCCCGAGGTCCTTTCGCCTCTCTCTTCTCTCCAGTGCCTGGTGCATTTTCAAACACAGTACCTTTCCTTT i cebCap1.NW_016107454v1 I 136 C 0 s aotNan1.NW_018509326v1 3367988 95 + 7587287 CACAC-CTTGAGCCT-----CTTATAGGC-AGCCCCGAGGTCCTTTCGCCTTTCTCTTCTCTCCAGTGCTTGGTGCATTTTCAAACACAGCACCTTTCCTTT i aotNan1.NW_018509326v1 I 84 C 0 s otoGar3.GL873658 2576204 86 + 5252280 ----------AGCCT-----CTCACGGCC-TGCTCCAGGCTCCTGTCACATTTCTGTTCTCTTCTGTACTTGGCTCCTTTTCAAAAACAATGTATGTCTTTT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 617411 100 + 2232271 --CATGCTTGTgactgtaagcttaagggcaggcatcaagttctttttacctttctattctcgccagtactcagcacatgtttaatctcagtagatttctttt i dasNov3.JH580157 C 0 I 522 e mm10.chr12 91439559 811 - 120129022 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=1074957.000000 s hg38.chr2_KI270769v1_alt 92580 146 + 120616 g---------------------aataaatgaGCAAGAATAAACCCGGTGCTGCTTGCCGAGCTCCTCTCCCTGGGCGGGGAACTAAAGCAAAACCACGCTG----------------------GATGGGGTCCCAAACACCCTAAGAAGGCCGAGCTCCTGCCGCTCTCCAGCACGCGCACCGAAGACC s panTro5.chr2A 3554656 146 + 111504155 G---------------------AATAAATGAGCAAGAATAAACCCGGTGCTGCTTGCCGAGCTCCTCTCCCTGGGCGGGGAACTAAAGCAAAACCACGCTG----------------------GATGGGGTCCCAAACACCCTAAGAAGGCCGAGCTCCTGCCGCTCTCCAGCACGCGCACCGAAGACC i panTro5.chr2A C 0 I 284 s panPan2.chr2A 3415286 146 + 114371477 G---------------------AATAAATGAGCAAGAATAAACCCGGTGCTGCTTGCCGAGCTCCTCTCCCTGGGCGGGGAACTAAAGCAAAACCACGCTG----------------------GATGGGGTCCCAAACACCCTAAGAAGGCCGAGCTCCTGTCGCTCTCCAGCACGCGCACCGAAGACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 293125 146 + 637652 G---------------------AATAAATGAGCAAGAATAAACTCGGTGCTGCTTGCCGAGCTCCTCTCCCTGGGCGGGGAACTAAAGCAAAACCACGCTG----------------------GATGGGGTCCCAAACGCCCTAAGAAGGCCGAGCTCCTGCCGCTCTCCAGCACGCGCACCGAAGACA i gorGor5.CYUI01015435v1 C 0 I 42 s nomLeu3.chr19 3089911 145 + 81552678 G---------------------AATAAATGAGCAAGAATAAACCTGGTGCTGCTTGCCAAGCTCCTCTCCCTGGGTGGGGAACTAAAGCAAAACCATGCTG----------------------GATGGGGTCCCAAACACCCTAAGAAGGGCGAGCTTCTGTCGCTCTCCAGCA-GTGCACCGAGGACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353326 146 + 108979918 G---------------------AATAAATGAGCAAGAATAAACCCAGTGCTGCTTGCTGAGCTCCTCTCCCCAGGCAGGGAACTAGAGCAAAACCACGCTG----------------------GATGGGGTCCCAAACACCCTAAGAAGGCTGAGCGCCTGCCACTCTCCAGCACGTACACCGAGGAGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5065462 144 - 111193037 G---------------------AATAAATGAGCAAGAATAAACCCAGTGCTGCTTGCTGAGCTCCTCTCCCCAGGCGGGGAACTAGAGCAAAACCACGCTG----------------------GATGGGGTCCCAAACACCCTAAGAAGGCTGAGCGCCTGCCACTCTCCAGCACGTACACCGAGGA-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3456655 146 + 3644372 G---------------------AATAAATGAGCAAGAATAAACCCAGTGCTGCTTGCTGAGCTCCTCTCCCCAGGCGGGGAACTAGAGCAAAACCACGCTG----------------------GATGGGGTCCCAAACACCCTAAGAAGGCTGAGCGCCTGCCACTCTCCAGCACGTACACCGAGGAGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413402 142 - 10304083 G---------------------AATAAATGAGCAAGAATAAACCCAGTGCTGCTTGCTGAGCTCCTCTCCCCAGGCAGGGAACTAGAGCAAAACCACGCTG----------------------GATGGGGTCCCAAACGCCCTAAGAAGGCTGAGCGCCTGCCACTCTCCATCACGTGCACCGAG---- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514123 144 - 107702431 G---------------------AATGAATAAGCAAGAATAAACCCAGTGCT--TTGCTGAGCTCCTCTCCCCAGGCAGGGAACTAGAGCAAAACCACGCTG----------------------GATGGGGTCCCAAACGCCCTAAGAAGGCTGAGCACCTGCCACTCCCCAGCATGTGTACCGAGGAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045151 146 + 1565135 G---------------------AATAAATGAGCAAGAATAAACCCAGTGCTGCTTGTTGAGCTCCTCTCCCCAGGCAGGGAACTAGAGCAAAACCACGCTG----------------------GATGGGGTCCCAAACGCCCTAAGAAGGCTGAGCGCCTGCTACTCTCCAGCACGTGCACCGAGGAGC i manLeu1.NW_012104432v1 C 0 I 41 s calJac3.chr14 3494702 142 - 108792865 G---------------------AATAAATGAGCGAGAATAAACCTGCTGCTGTTTGCTGAGCTCCTCTGTCTAGGC-GGGAACTAAAGCAAAACCACGCTG----------------------GACTGAGTCCCAAACACCCTAAG-ATGCTGAGCTCCTACAGCTCTCCAGCAAGCGCG--GAGGATT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138858 134 - 7082604 G---------------------AACAAATGAGCGAGAATAAACCCGGGGCTGCTTGCCGAGCGCCTCCGCCTAGGC--GGAACTA----AAAACCGAGCTG----------------------GAGGGAGTCCCGAACACGCGACG---GCGGAGCTCCTGCTGCTCTCCAGC-AGCGCC--GAGGATT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 625035 128 + 5243153 G---------------------AATAAATGAGCGAGAATAAACCTGGTGCTGCCTGTCGAGCTCCTCTGTCTAGGC-AGGAACTAAAG-AAAACCA--CTG----------------------GGCTGAGTCCCGAACACCCTAAG---GCCGAGCTCCTGCTGCTCTCCAGCAAGCG----------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368083 143 + 7587287 G---------------------AATAAATGAGCGAGAATAAACCTGGTGCTGCTTGCCGAGCTCCTCTGTCTAGGC-GGGAACTAAAGCAAAACCACGCTG----------------------CACTGAGTCCCAAACACCCTAAGAAGGCCGAGCTCCTGCAGCTCTCCAGCAAGCGCA--GAGGATT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2576290 173 + 5252280 GGgtttgtttgtttgtttgtttAATGAATGAATAAAAATAAACACTGTGCCGTGTGCTGGGTTCCTCT-CTGGGGC--------AAAGCAAAACCTCACAGATTTTTCTTGCTGTGCACACATGAGGGAGTTCTCAGCATCCTAAGGAAGCTGGGATATTGTTGCTC-------CGGGGACATGAGACT i otoGar3.GL873658 C 0 I 1 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=64815.000000 s hg38.chr2_KI270769v1_alt 92726 16 + 120616 GGAGGGAGGGTCTGTC s panTro5.chr2A 3555086 16 + 111504155 GGAGGGAGGGCCTGTC i panTro5.chr2A I 284 C 0 s panPan2.chr2A 3415432 16 + 114371477 AGAGGGAGGGCCTGCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 293313 16 + 637652 GGAGGGAGGGCCTGTC i gorGor5.CYUI01015435v1 I 42 C 0 s nomLeu3.chr19 3090056 16 + 81552678 GGAGGGAGGGCCTGTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353472 16 + 108979918 GGACAGTGGGCCCTTC i rheMac8.chr13 C 0 C 0 s macNem1.NW_012011978v1 3456801 16 + 3644372 GGACAGTGGGCCCTTC i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3514267 16 - 107702431 GGACAGGGGGCCCTTC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3494844 16 - 108792865 GGAGGGAGGGCCCGTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3138992 16 - 7082604 GGAGGGAGGGCCCGTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 625163 4 + 5243153 ------------CGTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368226 16 + 7587287 GGAGGGAGGGCCCGTC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2576464 16 + 5252280 GGAAAGACAGGCTGTC i otoGar3.GL873658 I 1 I 38 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e manLeu1.NW_012104432v1 1045297 41 + 1565135 I e cerAty1.NW_012000820v1 3413544 0 - 10304083 C e macFas5.chr13 5065606 0 - 111193037 C a score=76709.000000 s hg38.chr2_KI270769v1_alt 92742 18 + 120616 GCTCTCCTGC----AGGAGCAC s panTro5.chr2A 3555102 18 + 111504155 GCTCTCCAGC----AGGAGCAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415448 18 + 114371477 GCTCTCCAGC----AGGAGCAC i panPan2.chr2A C 0 I 3 s gorGor5.CYUI01015435v1 293329 18 + 637652 GCTTTCCAGC----AGGAGCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090072 17 + 81552678 GCTCTCCAGC----AGCA-CAC i nomLeu3.chr19 C 0 I 4 s rheMac8.chr13 3353488 18 + 108979918 ACGCTCCAGC----ATGAGCAC i rheMac8.chr13 C 0 I 7 s macNem1.NW_012011978v1 3456817 18 + 3644372 ACGCTCCAGC----ATGAGCAC i macNem1.NW_012011978v1 C 0 I 7 s chlSab2.chr14 3514283 17 - 107702431 ACGCTCCAGC----ATGAGCA- i chlSab2.chr14 C 0 C 0 s calJac3.chr14 3494860 22 - 108792865 GCTCTCCAGCAGGAAGGAGCAC i calJac3.chr14 C 0 I 3 s saiBol1.JH378218 3139008 18 - 7082604 GCTCTCCAGC----AGGAGCAC i saiBol1.JH378218 C 0 I 3 s cebCap1.NW_016107454v1 625167 18 + 5243153 GCTCTCCAGC----AGGAGCAC i cebCap1.NW_016107454v1 C 0 I 3 s aotNan1.NW_018509326v1 3368242 18 + 7587287 GCTCTCCAGC----AGGAGCAC i aotNan1.NW_018509326v1 C 0 I 79 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e manLeu1.NW_012104432v1 1045297 41 + 1565135 I e cerAty1.NW_012000820v1 3413544 0 - 10304083 C e macFas5.chr13 5065606 0 - 111193037 C a score=38968.000000 s hg38.chr2_KI270769v1_alt 92760 23 + 120616 GAGTGGAGGGAGGGCCTGCGGCG s panTro5.chr2A 3555120 23 + 111504155 GAGTGGAGGGAGGGCCTGCGGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415469 23 + 114371477 GACTGGAGGGAGGGCCTGTCGCT i panPan2.chr2A I 3 C 0 s gorGor5.CYUI01015435v1 293347 23 + 637652 GAGTGGAGGGAGGGCCTGCGGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090093 23 + 81552678 GACTGGAGGGAGGGCCCGTCACT i nomLeu3.chr19 I 4 C 0 s macFas5.chr13 5065606 21 - 111193037 --GTGGACAGTGGGCCCTTCACG i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3413544 23 - 10304083 GAGTGGACAGAGGGCCCTTCACG i cerAty1.NW_012000820v1 C 0 C 0 s calJac3.chr14 3494885 23 - 108792865 GAGTGGAGGGAGGGTCTGTCACG i calJac3.chr14 I 3 C 0 s saiBol1.JH378218 3139029 12 - 7082604 GAGTGGACGGAG----------- i saiBol1.JH378218 I 3 C 0 s cebCap1.NW_016107454v1 625188 12 + 5243153 GATTGGAGGGAG----------- i cebCap1.NW_016107454v1 I 3 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e aotNan1.NW_018509326v1 3368260 79 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e manLeu1.NW_012104432v1 1045297 41 + 1565135 I e chlSab2.chr14 3514300 0 - 107702431 C e macNem1.NW_012011978v1 3456835 7 + 3644372 I e rheMac8.chr13 3353506 7 + 108979918 I a score=46553.000000 s hg38.chr2_KI270769v1_alt 92783 21 + 120616 CTCCAGCAGGAGCATGAGGAG s panTro5.chr2A 3555143 21 + 111504155 CTCCAGCAGGAGCATGAGGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415492 21 + 114371477 CTCCAGCAGGAGCACGAGGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 293370 21 + 637652 CTCCAGCAGGAGCACGAGGAG i gorGor5.CYUI01015435v1 C 0 I 643 s nomLeu3.chr19 3090116 21 + 81552678 CTCCAGCAGGAGCACGAGGAG i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5065627 21 - 111193037 CTCCAGCATGAGCACCTAGGG i macFas5.chr13 C 0 I 1 s cerAty1.NW_012000820v1 3413567 21 - 10304083 CTCCAGCATGAGCACCTAGGG i cerAty1.NW_012000820v1 C 0 I 1 s chlSab2.chr14 3514300 7 - 107702431 --------------CCTAGGG i chlSab2.chr14 C 0 I 1 s calJac3.chr14 3494908 21 - 108792865 CTCCAGCAGAAACAGGAGCAT i calJac3.chr14 C 0 C 0 s aotNan1.NW_018509326v1 3368339 21 + 7587287 CTCCAGCAGGAGCACACGGAG i aotNan1.NW_018509326v1 I 79 C 0 e mm10.chr12 91439559 811 - 120129022 I e saiBol1.JH378218 3139041 0 - 7082604 C e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e cebCap1.NW_016107454v1 625200 0 + 5243153 C e colAng1.NW_012118821v1 3408755 0 - 13651311 C e manLeu1.NW_012104432v1 1045297 41 + 1565135 I e macNem1.NW_012011978v1 3456835 7 + 3644372 I e rheMac8.chr13 3353506 7 + 108979918 I a score=482670.000000 s hg38.chr2_KI270769v1_alt 92804 73 + 120616 TGGAGGGAGGGCCTGTCACTCTCCAGCACGCACACCGAGGAG---------------------------------------------------------------------------------------TGGAGGGAGAGCCTGTCGCTCTCCAGCAGAA s panTro5.chr2A 3555164 73 + 111504155 TGGAGGGAGGGCCTGTCACTCTCCAGCACGCACACCGAGGAG---------------------------------------------------------------------------------------TGGAGGGAGAGCCTGTCGCTCTCCAGCAGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415513 73 + 114371477 TGGAGGGAGGGCCTGTCACTCTGCTGCACGCACACCGAGGAG---------------------------------------------------------------------------------------TGGAGGGAGAGCCTGTCGCTCTCCAGCAGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294034 73 + 637652 TGGAGGGAGGGCCTGTCACTCTCCAGCACGCACACCGAGGAG---------------------------------------------------------------------------------------TGGAGGGAGAGCCTGTCGCTCTCCAGCAGAA i gorGor5.CYUI01015435v1 I 643 C 0 s nomLeu3.chr19 3090137 73 + 81552678 TGGAGGGAGGGCCCGTCGCGCTCCAGCACATGCACCAAGGAG---------------------------------------------------------------------------------------TGGAGGGAGGGCCCCTTGCTCTCCAGCAGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353513 70 + 108979918 TGGAGGGAGGACCTGTCACTCTCCAGCACGCACATT---GAG---------------------------------------------------------------------------------------TGGAGGGAGAGCCCATCGCTCTCAAGCAGAA i rheMac8.chr13 I 7 C 0 s macFas5.chr13 5065649 70 - 111193037 TGGAGGGAGGACCTGTCACTCTCCAGCACGCACATT---GAG---------------------------------------------------------------------------------------TGGAGGGAGAGCCCATCGCTCTCAAGCAGAA i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3456842 70 + 3644372 TGGAGGGAGGACCTGTCACTCTCCAGCACGCACATT---GAG---------------------------------------------------------------------------------------TGGAGGGAGAGCCCATCGCTCTCAAGCAGAA i macNem1.NW_012011978v1 I 7 C 0 s cerAty1.NW_012000820v1 3413589 70 - 10304083 TGGAGGGAGGACCTGTCACTCTCCAGCACGCACCCT---GAG---------------------------------------------------------------------------------------TGGAGGGAGAGCCCGTCGCTCTCAAGCAGAA i cerAty1.NW_012000820v1 I 1 C 0 s chlSab2.chr14 3514308 70 - 107702431 TGGAGGGAGGACCTGTCACTCTCCAGCACGCACACT---GAG---------------------------------------------------------------------------------------TGGAAGGAGAGCCCGTCGCTCTCAAGCAGAA i chlSab2.chr14 I 1 C 0 s manLeu1.NW_012104432v1 1045338 70 + 1565135 TGGAGGGAGGACCTGTCACTCTCCAGCACGCACCCT---GAG---------------------------------------------------------------------------------------TGGAGGGAGAGCCCGTCGCTCTCAAGCAGAA i manLeu1.NW_012104432v1 I 41 C 0 s calJac3.chr14 3494929 73 - 108792865 TGGAGGGAAGGCCTGTCACTCTCCAGCACGTGCACTAATGAT---------------------------------------------------------------------------------------TGGAGAGTGGGCCCGTCGCTCTCCAGGAGAA i calJac3.chr14 C 0 I 168 s saiBol1.JH378218 3139041 64 - 7082604 ---------GGCCTGTCACTCTCCAGCAGGTGCAGCGAGGAT---------------------------------------------------------------------------------------TGGAGGGAGGGCCTGTCACTCTCCAGCACGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 625200 64 + 5243153 ---------GGCCTGTCACTCTCCAGCACGTGCATCAAGGAT---------------------------------------------------------------------------------------TGGAGGGAGGGCCTGTCGCTCTCCGGCACGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368360 160 + 7587287 TGGAGGGAGGGCCTGTCACTCTCAAGCACGTGCACCGAGGATTGGAGAAAGGGCCGGGAGGGAGGGGAGGGCCTGTCACCACGTGCCGATTGGAAGGTGGGCCGTCTCTCGCTAGCAAGAGCACAGGAGTGGAGGGAGGGCCCATCGCTCTCCAGCAGGA i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=177531.000000 s hg38.chr2_KI270769v1_alt 92877 20 + 120616 GCACCAAGGATTGGAGGGAG s panTro5.chr2A 3555237 20 + 111504155 GCACCAAGGATTGGAGGGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415586 20 + 114371477 GCACCAAGGATTGGAGGGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294107 20 + 637652 GCACCAAGGATTGGAGGGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090210 20 + 81552678 GCACCAAGGATTGGAAGTAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353583 20 + 108979918 GCACCGAGGATTGGAGGGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5065719 20 - 111193037 GCACCGAGGATTGGAGGGAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3456912 20 + 3644372 GCACCGAGGATTGGAGGGAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413659 20 - 10304083 GCACCGAGGATTGGAGGGAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514378 20 - 107702431 GCACCGAGGATTGGAGGGAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045408 20 + 1565135 GCACCGAGGATTGGAGGGAG i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3495170 20 - 108792865 GCACCAATGATTGGAGGGAG i calJac3.chr14 I 168 C 0 s saiBol1.JH378218 3139105 20 - 7082604 GCACCGAGGATTGGAGGGAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 625264 20 + 5243153 GCACCGAAGATTGAAGGGAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368520 20 + 7587287 GCATCAAGGATCGGAGGGAG i aotNan1.NW_018509326v1 C 0 I 121 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=109441.000000 s hg38.chr2_KI270769v1_alt 92897 12 + 120616 GGCCTGTCGCTC s panTro5.chr2A 3555257 12 + 111504155 GGCCTGTCGCTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415606 12 + 114371477 GGCCTGTCGCTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294127 12 + 637652 GGCCTGTCGCTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090230 12 + 81552678 GGCCTGTCGCTC i nomLeu3.chr19 C 0 T 125 s rheMac8.chr13 3353603 12 + 108979918 GGCCTGTCACTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5065739 12 - 111193037 GGCCTGTCACTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3456932 12 + 3644372 GGCCTGTCACTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413679 12 - 10304083 GGCCTGTTACTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514398 12 - 107702431 GGCCTGTCACTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045428 12 + 1565135 GGCCTGTCACTC i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3495190 12 - 108792865 GGCCCGTCGCTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139125 12 - 7082604 GGCCCGTCGCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 625284 12 + 5243153 GGCCCGTCGCTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368661 12 + 7587287 GGCCTGTCACTC i aotNan1.NW_018509326v1 I 121 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=166328.000000 s hg38.chr2_KI270769v1_alt 92909 21 + 120616 TCCAGCAGGAGCACGAGGAGT s panTro5.chr2A 3555269 21 + 111504155 TCCAGCAGGAGCACGAGGAGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415618 21 + 114371477 TCCAGCAGGAGCACGAGGAGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294139 21 + 637652 TCCAGCAGGAGCACGAGGAGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090117 21 + 81552678 TCCAGCAGGAGCACGAGGAGT i nomLeu3.chr19 T 125 C 0 s rheMac8.chr13 3353615 21 + 108979918 TCCAGCAGGAGCAAGAGGAGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5065751 21 - 111193037 TCCAGCAGGAGCAAGAGGAGT i macFas5.chr13 C 0 I 3 s macNem1.NW_012011978v1 3456944 21 + 3644372 TCCAGCAGGAGCAAGAGGAGT i macNem1.NW_012011978v1 C 0 I 104 s cerAty1.NW_012000820v1 3413691 21 - 10304083 TCCAGCAGGAGCAAGAGGAGT i cerAty1.NW_012000820v1 C 0 I 13 s chlSab2.chr14 3514410 21 - 107702431 TCCAGCAGGAGCAAGAGGAGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045440 21 + 1565135 TCCAGCAGGAGCAAGAGGAGT i manLeu1.NW_012104432v1 C 0 I 164 s calJac3.chr14 3495202 21 - 108792865 TCCAGCAGAAGAACGAGGAGT i calJac3.chr14 C 0 I 174 s saiBol1.JH378218 3139137 17 - 7082604 TCCAGCA----AACGCGGAGG i saiBol1.JH378218 C 0 I 3 s cebCap1.NW_016107454v1 625296 21 + 5243153 TCCAGCAGGAGCACGAGGAGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368673 21 + 7587287 TCCAGCAGGAACAGGAGCATT i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=6600.000000 s hg38.chr2_KI270769v1_alt 92930 1 + 120616 G s panTro5.chr2A 3555290 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415639 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294160 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090138 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353636 1 + 108979918 G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5065775 1 - 111193037 G i macFas5.chr13 I 3 C 0 s chlSab2.chr14 3514431 1 - 107702431 G i chlSab2.chr14 C 0 I 79 s calJac3.chr14 3495397 1 - 108792865 G i calJac3.chr14 I 174 C 0 s saiBol1.JH378218 3139157 1 - 7082604 G i saiBol1.JH378218 I 3 C 0 s cebCap1.NW_016107454v1 625317 1 + 5243153 G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368694 1 + 7587287 G i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e manLeu1.NW_012104432v1 1045461 164 + 1565135 I e cerAty1.NW_012000820v1 3413712 13 - 10304083 I e macNem1.NW_012011978v1 3456965 104 + 3644372 I a score=5500.000000 s hg38.chr2_KI270769v1_alt 92931 1 + 120616 G s panTro5.chr2A 3555291 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415640 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294161 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 I 219 s nomLeu3.chr19 3090139 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353637 1 + 108979918 G i rheMac8.chr13 C 0 I 141 s macFas5.chr13 5065776 1 - 111193037 G i macFas5.chr13 C 0 C 0 s calJac3.chr14 3495398 1 - 108792865 G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139158 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 625318 1 + 5243153 G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368695 1 + 7587287 G i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e manLeu1.NW_012104432v1 1045461 164 + 1565135 I e chlSab2.chr14 3514432 79 - 107702431 I e cerAty1.NW_012000820v1 3413712 13 - 10304083 I e macNem1.NW_012011978v1 3456965 104 + 3644372 I a score=6909.000000 s hg38.chr2_KI270769v1_alt 92932 18 + 120616 ACTGCC---------------------------------------------------------------------------------G--GCCCGTCACTC s panTro5.chr2A 3555292 99 + 111504155 ACTGCCGGCCCGTCACTCTCCAGCACGTGCACCACGGAGTGGAGAGAGAGCCTGTCACTCCAGCAGGAGCACCAGGAGTGAACTGCGG--GCCCGTCACTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415641 18 + 114371477 ACTGCC---------------------------------------------------------------------------------G--GCCCGTCACTC i panPan2.chr2A C 0 C 0 s nomLeu3.chr19 3090140 18 + 81552678 --------------------------------------------AGGGAG-------------------------------------G--GCCCGTCGCGC i nomLeu3.chr19 C 0 I 84 s macFas5.chr13 5065777 18 - 111193037 --------------------------------------------GGGGCG-------------------------------------G--GGGCGTCACTC i macFas5.chr13 C 0 C 0 s calJac3.chr14 3495399 18 - 108792865 --------------------------------------------AGGGAG-------------------------------------G--GCCCTTCACTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139159 20 - 7082604 --------------------------------------------AGGGAG-------------------------------------GCCGCCTGTCACTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 625319 18 + 5243153 --------------------------------------------AGGGAG-------------------------------------G--GCCTGTCACTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368696 18 + 7587287 --------------------------------------------AGGGAA-------------------------------------G--GCCTGTCACTC i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e manLeu1.NW_012104432v1 1045461 164 + 1565135 I e chlSab2.chr14 3514432 79 - 107702431 I e cerAty1.NW_012000820v1 3413712 13 - 10304083 I e macNem1.NW_012011978v1 3456965 104 + 3644372 I e rheMac8.chr13 3353638 141 + 108979918 I e gorGor5.CYUI01015435v1 294162 219 + 637652 I a score=40405.000000 s hg38.chr2_KI270769v1_alt 92950 34 + 120616 TCCAGCACGTGCACCACGGAG-----------------------------------------TGGAGAGAGAGC--------------------C s panTro5.chr2A 3555391 34 + 111504155 TCCAGCACGTGCACCACGGAG-----------------------------------------TGGAGAGAGAGC--------------------C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415659 34 + 114371477 TCCAGCACGTGCACCACGGAG-----------------------------------------TGGAGAGAGAGC--------------------C i panPan2.chr2A C 0 C 0 s macFas5.chr13 5065795 75 - 111193037 TCCAGCACCTGCACCAAGGAATGGAGGCAGGGCCCTTGCTCTCCAGCAGAAGCAACAATGATTGGAGGGAGGGC--------------------C i macFas5.chr13 C 0 C 0 s calJac3.chr14 3495417 51 - 108792865 TCCAGCTCGTGCACCCAG--------------------------------------------TGGAGGGAGGGCCTGTCACTCTCCAGCAGGAAC i calJac3.chr14 C 0 I 21 s saiBol1.JH378218 3139179 33 - 7082604 TCCAGC-AGTGCACCAAGGAT-----------------------------------------TGGAGTAAGGGC--------------------C i saiBol1.JH378218 C 0 I 18 s cebCap1.NW_016107454v1 625337 33 + 5243153 TCCAGC-AGTGCACCAAGGAT-----------------------------------------TGGAGAGAGGGC--------------------C i cebCap1.NW_016107454v1 C 0 I 593 s aotNan1.NW_018509326v1 3368714 34 + 7587287 TCCAGCATGTGCACTCAGGAG-----------------------------------------TGGAGGGAGTGC--------------------C i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e manLeu1.NW_012104432v1 1045461 164 + 1565135 I e chlSab2.chr14 3514432 79 - 107702431 I e cerAty1.NW_012000820v1 3413712 13 - 10304083 I e macNem1.NW_012011978v1 3456965 104 + 3644372 I e rheMac8.chr13 3353638 141 + 108979918 I e nomLeu3.chr19 3090158 84 + 81552678 I e gorGor5.CYUI01015435v1 294162 219 + 637652 I a score=4011.000000 s hg38.chr2_KI270769v1_alt 92984 2 + 120616 TG s panTro5.chr2A 3555425 2 + 111504155 TG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415693 2 + 114371477 TG i panPan2.chr2A C 0 C 0 s macFas5.chr13 5065870 2 - 111193037 TG i macFas5.chr13 C 0 C 0 s calJac3.chr14 3495489 2 - 108792865 TG i calJac3.chr14 I 21 C 0 s saiBol1.JH378218 3139230 2 - 7082604 TG i saiBol1.JH378218 I 18 C 0 s aotNan1.NW_018509326v1 3368748 2 + 7587287 TG i aotNan1.NW_018509326v1 C 0 I 4 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e cebCap1.NW_016107454v1 625370 593 + 5243153 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e manLeu1.NW_012104432v1 1045461 164 + 1565135 I e chlSab2.chr14 3514432 79 - 107702431 I e cerAty1.NW_012000820v1 3413712 13 - 10304083 I e macNem1.NW_012011978v1 3456965 104 + 3644372 I e rheMac8.chr13 3353638 141 + 108979918 I e nomLeu3.chr19 3090158 84 + 81552678 I e gorGor5.CYUI01015435v1 294162 219 + 637652 I a score=4230.000000 s hg38.chr2_KI270769v1_alt 92986 3 + 120616 TCA s panTro5.chr2A 3555427 3 + 111504155 TCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415695 3 + 114371477 TCA i panPan2.chr2A C 0 C 0 s macFas5.chr13 5065872 3 - 111193037 TCA i macFas5.chr13 C 0 I 2 s calJac3.chr14 3495491 3 - 108792865 TCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139232 3 - 7082604 TCA i saiBol1.JH378218 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e cebCap1.NW_016107454v1 625370 593 + 5243153 I e aotNan1.NW_018509326v1 3368750 4 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e manLeu1.NW_012104432v1 1045461 164 + 1565135 I e chlSab2.chr14 3514432 79 - 107702431 I e cerAty1.NW_012000820v1 3413712 13 - 10304083 I e macNem1.NW_012011978v1 3456965 104 + 3644372 I e rheMac8.chr13 3353638 141 + 108979918 I e nomLeu3.chr19 3090158 84 + 81552678 I e gorGor5.CYUI01015435v1 294162 219 + 637652 I a score=24113.000000 s hg38.chr2_KI270769v1_alt 92989 18 + 120616 --CTCCAGAAGGAGCACCAG s panTro5.chr2A 3555430 18 + 111504155 --CTCCAGAAGGAGCACCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415698 18 + 114371477 --CTCCAGCAGGAGCACCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294381 18 + 637652 --CTCCAGCAGGAGCACGAG i gorGor5.CYUI01015435v1 I 219 C 0 s macFas5.chr13 5065877 18 - 111193037 --CTCCAGCAGGAGCAAGAG i macFas5.chr13 I 2 C 0 s macNem1.NW_012011978v1 3457069 18 + 3644372 --CTCCAGCAGGAGCAAGAG i macNem1.NW_012011978v1 I 104 C 0 s calJac3.chr14 3495494 20 - 108792865 CTCTCCAGCAGGAACAGGAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139235 14 - 7082604 CT---CAGCACGTGCAG--- i saiBol1.JH378218 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e cebCap1.NW_016107454v1 625370 593 + 5243153 I e aotNan1.NW_018509326v1 3368750 4 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e manLeu1.NW_012104432v1 1045461 164 + 1565135 I e chlSab2.chr14 3514432 79 - 107702431 I e cerAty1.NW_012000820v1 3413712 13 - 10304083 I e rheMac8.chr13 3353638 141 + 108979918 I e nomLeu3.chr19 3090158 84 + 81552678 I a score=10716.000000 s hg38.chr2_KI270769v1_alt 93007 12 + 120616 GAGT--GG-ACTGCG s panTro5.chr2A 3555448 12 + 111504155 GAGT--GG-ACTGCG i panTro5.chr2A C 0 I 83 s panPan2.chr2A 3415716 12 + 114371477 GAGT--GA-ACTGCG i panPan2.chr2A C 0 I 125 s gorGor5.CYUI01015435v1 294399 13 + 637652 GAGT--GGAACTGCG i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5065895 12 - 111193037 GAGT--GG-GGGGGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457087 14 + 3644372 GAGTGGGG-GGGGGT i macNem1.NW_012011978v1 C 0 C 0 s chlSab2.chr14 3514511 12 - 107702431 GATT--GG-AAGGAG i chlSab2.chr14 I 79 C 0 s manLeu1.NW_012104432v1 1045625 12 + 1565135 GATT--GG-AAGGTG i manLeu1.NW_012104432v1 I 164 C 0 s calJac3.chr14 3495514 12 - 108792865 CATT--GG-AGGGAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139249 11 - 7082604 -ATT--GG-AGGGTG i saiBol1.JH378218 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e cebCap1.NW_016107454v1 625370 593 + 5243153 I e aotNan1.NW_018509326v1 3368750 4 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e cerAty1.NW_012000820v1 3413712 13 - 10304083 I e rheMac8.chr13 3353638 141 + 108979918 I e nomLeu3.chr19 3090158 84 + 81552678 I a score=12321.000000 s hg38.chr2_KI270769v1_alt 93019 3 + 120616 GAC s panTro5.chr2A 3555543 3 + 111504155 GGC i panTro5.chr2A I 83 C 0 s panPan2.chr2A 3415853 3 + 114371477 GGC i panPan2.chr2A I 125 C 0 s gorGor5.CYUI01015435v1 294412 3 + 637652 GGC i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5065907 3 - 111193037 GGC i macFas5.chr13 C 0 I 2 s macNem1.NW_012011978v1 3457101 3 + 3644372 GGC i macNem1.NW_012011978v1 C 0 I 2 s chlSab2.chr14 3514523 3 - 107702431 GGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045637 3 + 1565135 GGC i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3495526 3 - 108792865 GGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139260 3 - 7082604 GGC i saiBol1.JH378218 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e cebCap1.NW_016107454v1 625370 593 + 5243153 I e aotNan1.NW_018509326v1 3368750 4 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e cerAty1.NW_012000820v1 3413712 13 - 10304083 I e rheMac8.chr13 3353638 141 + 108979918 I e nomLeu3.chr19 3090158 84 + 81552678 I a score=2800.000000 s hg38.chr2_KI270769v1_alt 93022 1 + 120616 C s panTro5.chr2A 3555546 1 + 111504155 C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415856 1 + 114371477 C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294415 1 + 637652 C i gorGor5.CYUI01015435v1 C 0 C 0 s chlSab2.chr14 3514526 1 - 107702431 C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045640 1 + 1565135 C i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3495529 1 - 108792865 C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139263 1 - 7082604 C i saiBol1.JH378218 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e cebCap1.NW_016107454v1 625370 593 + 5243153 I e aotNan1.NW_018509326v1 3368750 4 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e cerAty1.NW_012000820v1 3413712 13 - 10304083 I e macNem1.NW_012011978v1 3457104 2 + 3644372 I e macFas5.chr13 5065910 2 - 111193037 I e rheMac8.chr13 3353638 141 + 108979918 I e nomLeu3.chr19 3090158 84 + 81552678 I a score=36648.000000 s hg38.chr2_KI270769v1_alt 93023 8 + 120616 CGTCACTA s panTro5.chr2A 3555547 8 + 111504155 CGTCACTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415857 8 + 114371477 CGTCACTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294416 8 + 637652 CGTCACTC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3353779 8 + 108979918 CGTCACCC i rheMac8.chr13 I 141 C 0 s macFas5.chr13 5065912 8 - 111193037 CGTCACCC i macFas5.chr13 I 2 C 0 s macNem1.NW_012011978v1 3457106 8 + 3644372 CGTCACCC i macNem1.NW_012011978v1 I 2 C 0 s cerAty1.NW_012000820v1 3413725 8 - 10304083 CGTCACTC i cerAty1.NW_012000820v1 I 13 C 0 s chlSab2.chr14 3514527 8 - 107702431 TGTCGCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045641 8 + 1565135 TGTCACTC i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3495530 8 - 108792865 TGTCACTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139264 7 - 7082604 -GTCTCTC i saiBol1.JH378218 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e cebCap1.NW_016107454v1 625370 593 + 5243153 I e aotNan1.NW_018509326v1 3368750 4 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e nomLeu3.chr19 3090158 84 + 81552678 I a score=233017.000000 s hg38.chr2_KI270769v1_alt 93031 51 + 120616 T-CCAGCACGTGCACCA----AGGAGTGGA-GGGAGGGCCCCTTGCTCTCCAGCAAA s panTro5.chr2A 3555555 51 + 111504155 T-CCAGCACGTGCACCA----AGGAGAGGA-GGGAGGGCCCCTTGCTCTCCAGCAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415865 51 + 114371477 T-CCAGCACGTGCACCA----AGGAGTGGA-GGGAGGGCCCCTTGCTCTCCAGCAGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294424 52 + 637652 TCCCAGCACGTGCACCA----AGGAGTGGA-GGGAGGGCCCCTTGCTCTCCAGCAGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090242 55 + 81552678 T-CCAGCACGCCCCCCGCCCCCACAGTGGA-GGGAGGGCCCATCGCTCTCCAGCATG i nomLeu3.chr19 I 84 C 0 s rheMac8.chr13 3353787 50 + 108979918 T-CCAGCACCTGCACCA----AGGAATGGA-GGCAGGGCCC-TTGCTCTCCAGCAGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5065920 50 - 111193037 T-CCAGCACCTGCACCA----AGGAATGGA-GGCAGGGCCC-TTGCTCTCCAGCAGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457114 50 + 3644372 T-CCAGCACCTGCACCA----AGGAATGGA-GGCAGGGCCC-TTGCTCTCCAGCAGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413733 51 - 10304083 T-CCAGGACGTGCACCC----AGGAGTGGAGGGCGGGCCCC-TTGCTCTCCAGCAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514535 36 - 107702431 T-CCAGCAGGTGCACCC----AGGAGTGGA-GGGAGGGCCC-C-------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045649 50 + 1565135 T-CCAGCACGCGCACCC----AGGAGTGGA-GGCAGGGCCC-TTGCTCTCCAGCAGA i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3495538 51 - 108792865 T-CCAGCACGTGCACCA----ATGATTGGA-GGGAGGGCCCGTCGCTCTCCAGCAGA i calJac3.chr14 C 0 I 133 s saiBol1.JH378218 3139271 49 - 7082604 T-CCAGCAAGAGCAC------AGGAGTGGA-GGGAGGGACCATCGCTCTCCAGCAGG i saiBol1.JH378218 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e cebCap1.NW_016107454v1 625370 593 + 5243153 I e aotNan1.NW_018509326v1 3368750 4 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=149531.000000 s hg38.chr2_KI270769v1_alt 93082 54 + 120616 AGCACCAAGGATCGGAAGT-----------------------------------------------------------------------------------AGGGCCTGTCGCTCTCCAGCAC-------------------------------GTCCCCCCCCGGC s panTro5.chr2A 3555606 54 + 111504155 AACACCGAGGATTGGAAGT-----------------------------------------------------------------------------------AGGGCCTGTCACTCTCCAGCAC-------------------------------GTCCCCCCCCGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415916 53 + 114371477 AACACCGAGGATTGGAAGT-----------------------------------------------------------------------------------AGGGCCTGTCACTCTCCAGCAC-------------------------------GT-CCCCCCCGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294476 83 + 637652 AGCACCAAGGATTGGAG-------------------------------------------------------------------------------------AGGGCCTGTCGCTCTCCAGCACTGTCGCTCTCCAGCCCCAAAAAAGATCCCCGGCCCCACCCCCGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090297 52 + 81552678 AGCACCAAGGATTGGAAGT-----------------------------------------------------------------------------------AAGGCCTGTCGCTCTCCAGCAC-------------------------------GT--CCCCCTGAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353837 52 + 108979918 AGCAACAATGATTGGAAGG-----------------------------------------------------------------------------------AGGGCCTGTCGCCCTCCAGCAC-------------------------------GC--GCACCCAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5065970 52 - 111193037 AGCAATAATGATTGGAAGG-----------------------------------------------------------------------------------AGGGCCTGTCGCCCTCCAGCAC-------------------------------GC--GCACCCAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457164 52 + 3644372 AGCAACAATGATTGGAAGG-----------------------------------------------------------------------------------AGGGCCTGTCGCCCTCCAGCAC-------------------------------GC--GCACCCAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413784 135 - 10304083 AGCAACAATGATTGGAAGGTGGGCCTGTCACTCTCCAGCACCTGCACCAAGGAATGGAGGCAGGGCTCTTGCTCTCCAGCAGAAGCAACAATGATTGGAAGATGGGCCTGTCGCTCTCCAGCAC-------------------------------GC--GCACCCAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514571 25 - 107702431 --------------------------------------------------------------------------------------------------------------TCGCTCTCCAGCAT-------------------------------GA--GCACCCAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045699 52 + 1565135 AGCAACAATGATTGGAAGG-----------------------------------------------------------------------------------AGGGCCTGTCACTCTCCAGCAC-------------------------------GT--GCACCCAGG i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3495722 49 - 108792865 AGCATCAAGGATCGGAGGG-----------------------------------------------------------------------------------AGGGCCCTTCACTCTCCAGCTC-------------------------------GT--GCACCC--- i calJac3.chr14 I 133 C 0 s saiBol1.JH378218 3139320 49 - 7082604 AATATCAAGGATCAGAGGG-----------------------------------------------------------------------------------AGGGCCCTTCACTCTCCAGCTC-------------------------------GT--GCACCC--- i saiBol1.JH378218 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e cebCap1.NW_016107454v1 625370 593 + 5243153 I e aotNan1.NW_018509326v1 3368750 4 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=147891.000000 s hg38.chr2_KI270769v1_alt 93136 22 + 120616 AGTGGA-----GGGAGGGCCCGTCGCT s panTro5.chr2A 3555660 22 + 111504155 AGTGGA-----GGGAGGGCCCATCGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415969 22 + 114371477 AGTGGA-----GGGAGGGCCCATCGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294559 27 + 637652 AGTGGAGGGAGGGGAGGGCCCGTCGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090349 22 + 81552678 AGTGGA-----GGGAGGGCCCATCGCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353889 22 + 108979918 AGTGGA-----GGGAGGGCCCCTCGCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066022 22 - 111193037 AGTGGA-----GGGAGGGCCCCTCGCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457216 22 + 3644372 AGTGGA-----GGGAGGGCCCCTCGCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413919 22 - 10304083 AGTGGA-----GGGAGGGCCCCTCGCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514596 22 - 107702431 AGTGGA-----GGGAGGGCCCCTCGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045751 22 + 1565135 AGTGGA-----GGGCGGGCCCCTCGCT i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3495771 22 - 108792865 AGTGGA-----GGGAGGGCCTGTCACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139369 22 - 7082604 AGTGGA-----GGGACGGTCTGTCACT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 625963 22 + 5243153 AGTGGA-----GGGAAGGCCTGGCGCA i cebCap1.NW_016107454v1 I 593 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e aotNan1.NW_018509326v1 3368750 4 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=70944.000000 s hg38.chr2_KI270769v1_alt 93158 8 + 120616 CTCCAGCA s panTro5.chr2A 3555682 8 + 111504155 CTCCAGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415991 8 + 114371477 CTCCAGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294586 8 + 637652 CTCCAGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090371 8 + 81552678 CTCCAGCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353911 8 + 108979918 CTCCAGCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066044 8 - 111193037 CTCCAGCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457238 8 + 3644372 CTCCAGCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413941 8 - 10304083 CTCCAGCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514618 8 - 107702431 CTCCAGCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045773 8 + 1565135 CTCCAGCG i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3495793 8 - 108792865 CTCCAGCA i calJac3.chr14 C 0 I 206 s saiBol1.JH378218 3139391 8 - 7082604 CTCCAGCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 625985 8 + 5243153 CTCCAGCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368754 8 + 7587287 CTCCAGCC i aotNan1.NW_018509326v1 I 4 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=55461.000000 s hg38.chr2_KI270769v1_alt 93166 6 + 120616 TGAGCA s panTro5.chr2A 3555690 6 + 111504155 TGAGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3415999 6 + 114371477 TGAGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294594 6 + 637652 TGAGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090379 6 + 81552678 TGAGCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353919 6 + 108979918 TGAGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066052 6 - 111193037 TGAGCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457246 6 + 3644372 TGAGCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413949 6 - 10304083 TGAGCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514626 6 - 107702431 TGAGCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045781 6 + 1565135 TGAGCA i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496007 6 - 108792865 TGAGCA i calJac3.chr14 I 206 C 0 s saiBol1.JH378218 3139399 6 - 7082604 GGAACA i saiBol1.JH378218 C 0 I 234 s cebCap1.NW_016107454v1 625993 6 + 5243153 TGAGCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368762 6 + 7587287 TGAGCA i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=18200.000000 s hg38.chr2_KI270769v1_alt 93172 2 + 120616 CC s panTro5.chr2A 3555696 2 + 111504155 CC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416005 2 + 114371477 CC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294600 2 + 637652 CC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090385 2 + 81552678 CC i nomLeu3.chr19 C 0 I 3 s rheMac8.chr13 3353925 2 + 108979918 CC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066058 2 - 111193037 CC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457252 2 + 3644372 CC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413955 2 - 10304083 CC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514632 2 - 107702431 CC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045787 2 + 1565135 CC i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496013 2 - 108792865 CC i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 625999 2 + 5243153 CC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368768 2 + 7587287 CC i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e saiBol1.JH378218 3139405 234 - 7082604 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=16517.000000 s hg38.chr2_KI270769v1_alt 93174 3 + 120616 CAG s panTro5.chr2A 3555698 3 + 111504155 CAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416007 3 + 114371477 CAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294602 3 + 637652 CAG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3353927 3 + 108979918 CAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066060 3 - 111193037 CAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457254 3 + 3644372 CAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413957 3 - 10304083 CAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514634 3 - 107702431 CAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045789 3 + 1565135 CAG i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496015 3 - 108792865 AGG i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 626001 3 + 5243153 CAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368770 3 + 7587287 AAG i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e saiBol1.JH378218 3139405 234 - 7082604 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e nomLeu3.chr19 3090387 3 + 81552678 I a score=145938.000000 s hg38.chr2_KI270769v1_alt 93177 22 + 120616 AGATGGAG---GAAGGGTCAGCCAT s panTro5.chr2A 3555701 22 + 111504155 AGATGGAG---GAAGGGTCAGCCAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416010 22 + 114371477 AGATGGTG---GAAGGGTCAGCCAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294605 22 + 637652 AGATGGAG---GAAGGGTCAGCCAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090390 22 + 81552678 AGATGGAG---GAAGGGTCAGCCAT i nomLeu3.chr19 I 3 C 0 s rheMac8.chr13 3353930 25 + 108979918 AGATGGAGGAAGAAGGGTCAGCCAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066063 25 - 111193037 ACATGGAGGAAGAAGGGTCAGCCAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457257 25 + 3644372 AGATGGAGGAAGAAGGGTCAGCCAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413960 25 - 10304083 AGATGGAGGAAGAAGGGTCAGCCAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514637 22 - 107702431 AGATGGAG---GAAGGGCTAGCCAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045792 25 + 1565135 AGACGGAGGAAGAAGGGTCAGCCAT i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496018 22 - 108792865 AGATGGAG---GAACCGTCGGCCGT i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 626004 22 + 5243153 AAATGGAG---GAAGGGTCGGCCAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368773 22 + 7587287 AGATGGAG---AAAGAGTCGGCCAT i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e saiBol1.JH378218 3139405 234 - 7082604 I e dasNov3.JH580157 617511 522 + 2232271 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=67710.000000 s hg38.chr2_KI270769v1_alt 93199 10 + 120616 TTGTCAGGCT s panTro5.chr2A 3555723 10 + 111504155 TAGTCAGGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416032 10 + 114371477 TTGTCAGGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294627 10 + 637652 TTGTCAGGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090412 10 + 81552678 TTGTCGAGCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353955 10 + 108979918 TTGTCAGACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066088 10 - 111193037 TTGTCAGACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457282 10 + 3644372 TTGTCAGACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413985 10 - 10304083 TTGTCAGACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514659 10 - 107702431 TTGTCAGACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045817 10 + 1565135 TTGTCAGACT i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496040 10 - 108792865 TTGTCAAGCT i calJac3.chr14 C 0 C 0 s cebCap1.NW_016107454v1 626026 10 + 5243153 TTATGAAGCT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368795 10 + 7587287 TTGTCAAGCT i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 618033 10 + 2232271 TTTTAAAAGT i dasNov3.JH580157 I 522 C 0 e mm10.chr12 91439559 811 - 120129022 I e saiBol1.JH378218 3139405 234 - 7082604 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=211490.000000 s hg38.chr2_KI270769v1_alt 93209 24 + 120616 CTGCGTGTGA-AAAGCTGTGATTTC s panTro5.chr2A 3555733 24 + 111504155 CTGCGTGTGA-AAAGCTGTGATTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416042 24 + 114371477 CTGCGTGTGA-AAAGCTGTGATTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294637 24 + 637652 CTGCGTGTGA-AAAGCTGTGATTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090422 24 + 81552678 CTGCGTGTGA-AAAGCTGTGACTTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353965 24 + 108979918 CTGCGTGTGA-AAAGCTGTGATTTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066098 24 - 111193037 CTGCGTGTGA-AAAGCTGTGATTTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457292 24 + 3644372 CTGCGTGTGA-AAAGCTGTGATTTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3413995 24 - 10304083 CTGCGTGTGA-AAAGCTGTGATTTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514669 24 - 107702431 CTGCGTGTGA-AAAGCTGTGATTTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045827 24 + 1565135 CTGCGTGTGA-AAAGCTGTGATTTC i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496050 22 - 108792865 CTGCGTGTGA-AG--TCGTGATCTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139639 24 - 7082604 CTGCGTGTGA-AAACTCGTGATCTC i saiBol1.JH378218 I 234 C 0 s cebCap1.NW_016107454v1 626036 24 + 5243153 CTGCGTGTGA-AAAGTCGCGATCTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3368805 24 + 7587287 CTGCGTGTGA-GAAGTCGTGATCTC i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 618043 25 + 2232271 TTGCATGTTATAAACTCATGACATC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91439559 811 - 120129022 I e otoGar3.GL873658 2576480 38 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=9090.000000 s hg38.chr2_KI270769v1_alt 93233 1 + 120616 A s panTro5.chr2A 3555757 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416066 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294661 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090446 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353989 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066122 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457316 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414019 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514693 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045851 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496072 1 - 108792865 G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139663 1 - 7082604 A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 626060 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s mm10.chr12 91440370 1 - 120129022 A i mm10.chr12 I 811 C 0 s dasNov3.JH580157 618068 1 + 2232271 A i dasNov3.JH580157 C 0 I 2 e otoGar3.GL873658 2576480 38 + 5252280 I e aotNan1.NW_018509326v1 3368829 0 + 7587287 C e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=898855.000000 s hg38.chr2_KI270769v1_alt 93234 90 + 120616 TTTCTTATCAGTTATTACTGTCACTATCACTCAGGATGAAATTGGC-CTCACCCGCTCAGGAGCAATGCTGCCTTCTCCCTGTCCTCCTCC s panTro5.chr2A 3555758 90 + 111504155 TTTCTTATCAGTTATTACTGTCACTATCACTCAGGATGAAATTGGC-CTCACCCGCTCAGGAACAATGCTGCCTTCTCCCTGTCCTCCTCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416067 90 + 114371477 TTTCTTATCATTTATTACTGTCACTATCACTCAGGATGAAATTGGC-CTCACCCGCTCAGGAACAATGCTGCCTTCTCCCTGTCCTCCTCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294662 90 + 637652 TTTCTTATCAGTTATTACTGTCACTATCACTCAGGATGAAATTGGC-GTCACCCGCTCAGGAGCAATGCTGCCTTCTCCCTGTCCTCCTCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090447 90 + 81552678 TTTCTTATCAGTTATTACTGTCACCATCACTCAGGATGAAATTGGC-CTCACCCGCTCAGGAGCAATGCTCCCCTCTCCCTGTCCTGCTCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3353990 90 + 108979918 TTTCTTATCAGTTATTACTGTCACCGTCACTCAGGATGAAATTGGC-TTCACCCGCTTAGGAGCGATGCTGCCTTCTCCCTGTCCTCTTCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066123 90 - 111193037 TTTCTTATCAGTTATTACTGTCACCGTCACTCAGGATGAAATTGGC-TTCACCCGCTTAGGAGCGATGCTGCCTTCTCCCTGTCCTCTTCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457317 90 + 3644372 TTTCTTATCAGTTATTACTGTCACCGTCACTCAGGATGAAATTGGC-TTCACCCGCTTAGGAGCGATGCTGCCTTCTCCCTGTCCTCTTCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414020 90 - 10304083 TTTCTTATCAGTTATTACTGTCACCGTCACTCAGGATGAAATTGGC-TTCACCCGCTTAGGAGCGATGCTGCCTTCTCCCTGTCCTCCTCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514694 90 - 107702431 TTTCTTACCAGTTATTACTGTCACCATCACTCAGGATGAAACTGGC-TTCACCCGCTTAGGAGCGACGCTGCCTTCTCCCTGTCCTCCTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045852 90 + 1565135 TTTCTTATCAGTTATTACTGTCACCGTCACTCAGGATGAAATTGGC-TTCACCCGCTTAGGAGCGATGCTGCCTTCTCCCTGTCCCCCTCC i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496073 90 - 108792865 TTTCTTAGCAGTCGTTACTGTCACCATCGCTCAGGCTGAAATTGGC-CTGGCCCGCTCAGGGGCAATGCTGCCTTCTCCCTGTCCTCCTCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139664 90 - 7082604 TTTCTTAGCAGCCATTACTGTCACCATGGCTCAGACCGAAATTGGC-CTGGCCCGCTCAGGGGCAATGCTGCCTTCTCCCTGTCCTCGTCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 626061 89 + 5243153 TTTCTTAGCAGTCATTACTGTCACCATCGCTCAGGCTGAAATTGGC-CCAGCCGGCTCAGGAGCCATGCTGCCTTCT-CCTGTCCTCCTCC i cebCap1.NW_016107454v1 C 0 I 83 s aotNan1.NW_018509326v1 3368829 90 + 7587287 TTTCTTAGCAGTCATTACTGTCACCATCGCTCAGGCTGAAATTGGC-CTGGCCCGCTCAGGAGCAATGCTGCCTTCTCCCTGCCCTCCTCC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2576518 90 + 5252280 TCTCCCAGCAACTGTTATTGTTAGCATCGCTCTTAATGACACTGGC-ACTTGCCTTTCCGGAGCAATCCCCCTTCCTCACTTTTCTCCTCC i otoGar3.GL873658 I 38 C 0 s mm10.chr12 91440371 88 - 120129022 TTTTTGAACAGCCATTATTCTTCTAATCCGTCATAATAAACT--GC-CACACTCCCTCAGGAGCAATCCCCTTTTCTTGTTTTTCTCCTCC i mm10.chr12 C 0 C 0 s dasNov3.JH580157 618071 85 + 2232271 TTTCTTA------ATTATTATTATTATCACTGATAATAAAATTGTCACTTGCCCATTCAGGAGCAATCTTGCTTTCTCACTTTTCCTCTCC i dasNov3.JH580157 I 2 C 0 e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=63578.000000 s hg38.chr2_KI270769v1_alt 93324 11 + 120616 TGGATTGTTGA s panTro5.chr2A 3555848 11 + 111504155 TGGATTGTTGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416157 11 + 114371477 TGGATTGTTGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294752 11 + 637652 TGGATTGTTGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090537 11 + 81552678 GGGGTTGTTGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354080 11 + 108979918 TGGACTGTTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066213 11 - 111193037 TGGACTGTTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457407 11 + 3644372 TGGACTGTTGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414110 11 - 10304083 TGGACTGTTGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514784 11 - 107702431 TGGACTGTTGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045942 11 + 1565135 TGGACTGTTGA i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496163 8 - 108792865 GGGAC---TGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139754 8 - 7082604 GGGAC---TGG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3368919 8 + 7587287 GAGAC---TGA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2576608 10 + 5252280 TGGATTG-TGA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91440459 11 - 120129022 TAGAGAGTTAA i mm10.chr12 C 0 I 1881 s dasNov3.JH580157 618156 11 + 2232271 TAGATTGTTAA i dasNov3.JH580157 C 0 C 0 e cebCap1.NW_016107454v1 626150 83 + 5243153 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=463708.000000 s hg38.chr2_KI270769v1_alt 93335 63 + 120616 GGAAAAAG---CCAGACTA--ACCTGTT--CCACACCTTGGCATCAGTTGCATAAATGCTATCTCAGCAT s panTro5.chr2A 3555859 63 + 111504155 GGAAAAAG---CCAGACTA--ACCTGTT--CCACACCTTGGCATCAGTTGCATAAATGCTATCTCAGCAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416168 63 + 114371477 GGAAAAAG---CCAGACTA--ACCTGTT--CCACACCTTGGCATCAGTTGCATAAATGCTATCTCAGCAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294763 63 + 637652 GGAAAAAG---CCAGACTA--ACCTGTT--CCACACTTTGGCATCAGTTGCATAAATGCTATCTCAGCAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090548 63 + 81552678 GGAAAAAG---CCGGACTA--ACCCATT--CCACACCTTAGCATCAGTTGCATAAATGCTATCTCAGCAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354091 63 + 108979918 GGAGAACG---CCGGACTA--ATCCGCT--CCACACCCTGGCATCCCTTGCATAAATGCTATCTCAGCAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066224 63 - 111193037 GGAGAACG---CCGGACTA--ATCCGTT--CCACACCCTGGCATCCCTTGCATAAATGCTATCTCAGCAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457418 63 + 3644372 GGAGAACG---CCGGACTA--ATCCGTT--CCACACCCTGGCATCCCTTGCATAAATGCTATCTCAGCAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414121 63 - 10304083 GGAGAACG---CCAGACTA--ATCCGTT--CCACACCCTGGCATCCCTTGCATAAATGCTATCTCAGCAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514795 63 - 107702431 GGAGAACG---CCGGACTG--ATCCGTT--CCACACCCTGGCATCCCTTGCATAAATGCTATCTCAGCAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1045953 63 + 1565135 GGAAAAAG---CCGGACTA--ATCCGTT--CCACACCCTGGCATCCCTTGCATAAATGCTATCTCAGCAT i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496171 63 - 108792865 GGAAAAAA---CCGGACTA--ACCCGTT--GCACACCTCGGCATCTGCTGCAGAAACACTGCCGCGGCCT i calJac3.chr14 C 0 I 13 s saiBol1.JH378218 3139762 63 - 7082604 GGAGACGG---CCGGACTC--ACCCGTT--GCACACGTCGGCATCTGCTGCATAAATGCCGCCTCGGCCT i saiBol1.JH378218 C 0 I 13 s aotNan1.NW_018509326v1 3368927 63 + 7587287 GGAAAAAG---CCGGACTA--ACCCGTT--GCACACCTGGGCATGTGCTGCATAAATGCTACCTCGGCCT i aotNan1.NW_018509326v1 C 0 I 13 s otoGar3.GL873658 2576618 51 + 5252280 GGGGAAAGCAACCAGACTATCAAATTTT--CCAAACTTTAG-----------------CTATTTCAGCAT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 618167 68 + 2232271 AGAGAAAGCTACCAGACTA--GCAAATTTGTCAAACCTTGGCATCTATTGCCTAAATGCTATTTCAGCAT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e cebCap1.NW_016107454v1 626150 83 + 5243153 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=53722.000000 s hg38.chr2_KI270769v1_alt 93398 5 + 120616 GTTCT s panTro5.chr2A 3555922 5 + 111504155 GTTCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416231 5 + 114371477 GTTCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294826 5 + 637652 GTTCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090611 5 + 81552678 GTTCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354154 5 + 108979918 GTTCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066287 5 - 111193037 GTTCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457481 5 + 3644372 GTTCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414184 5 - 10304083 GTTCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514858 5 - 107702431 GTTCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046016 5 + 1565135 GTTCT i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496247 5 - 108792865 GTTCG i calJac3.chr14 I 13 C 0 s saiBol1.JH378218 3139838 5 - 7082604 GTTCG i saiBol1.JH378218 I 13 C 0 s cebCap1.NW_016107454v1 626233 5 + 5243153 GTTCG i cebCap1.NW_016107454v1 I 83 C 0 s aotNan1.NW_018509326v1 3369003 5 + 7587287 GTTCG i aotNan1.NW_018509326v1 I 13 C 0 s otoGar3.GL873658 2576669 5 + 5252280 GTTCT i otoGar3.GL873658 C 0 I 778 s dasNov3.JH580157 618235 5 + 2232271 GTTCT i dasNov3.JH580157 C 0 I 14 e mm10.chr12 91440470 1881 - 120129022 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=400106.000000 s hg38.chr2_KI270769v1_alt 93403 50 + 120616 --AGAACACAGTACTGTTTA---AACAACGTTCTGGGGGTAACCAAGTTTATAAC s panTro5.chr2A 3555927 50 + 111504155 --AGAACACAGTACTGTTTA---AACAACGTTCTGGGGGTAACCAAGTTTATAAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416236 50 + 114371477 --AGAACACAGTACTGTTTA---AACAACGTTCTGGGGGTAACCAAGTTTATAAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294831 50 + 637652 --AGAACACAGTACTGTTTA---AACAACGTTCTGGGGGTAACCAAGTTTATAAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090616 50 + 81552678 --AGAACACAGTACTGTTTA---AACAACGTTCTGGGTGTAGCCAAGTTTATAAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354159 49 + 108979918 --AGAACAGAGTACTGGTT----AACAACGTTCTGGGGGTAACCAAGTTTATAAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066292 49 - 111193037 --AGAACAGAGTACTGTTT----AACAACGTTCTGGGGGTAACCAAGTTTATAAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457486 49 + 3644372 --AGAACAGAGTACTGTTT----AACAACGTTCTGGGGGTAACCAAGTTTATAAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414189 49 - 10304083 --AGAACAGGGTACTGTTT----AACAACGTTCTGGCGGTAACCAAGTTTATAAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514863 49 - 107702431 --AGAACAGAGTACTGTTT----AACAACGTTCTGGGGGTAACCAAGTTTATAAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046021 49 + 1565135 --AGAACAGGGTACTGTTT----AACAACGTTCTGGGGGTAACCAAGTTTATAAC i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496252 49 - 108792865 --AGAACACAGTACTGTTCA---CACAACGTTCT-GCGGTAACCAAGTTTATAAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139843 49 - 7082604 --AGAACGTAGCACCGTTGG---CACAACGTTCT-GCGGTGACCAAGTTTATAAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 626238 49 + 5243153 --AGAACACAGTACTGTTCA---CACAACGTTCT-GCGGTAACCGAGTTTATAAC i cebCap1.NW_016107454v1 C 0 I 442 s aotNan1.NW_018509326v1 3369008 49 + 7587287 --AGAACACAGTACTGTTGA---CACAACGTTCT-GCGGTAACCAAGTTTATAAC i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 618254 53 + 2232271 GCAATGCA-AGTACTGTTCAAATAAAAATGTTAC-GGGACAACTAAGTTTATAAC i dasNov3.JH580157 I 14 C 0 e mm10.chr12 91440470 1881 - 120129022 I e otoGar3.GL873658 2576674 778 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=64752.000000 s hg38.chr2_KI270769v1_alt 93453 8 + 120616 TTGCAGAC s panTro5.chr2A 3555977 8 + 111504155 TTGCAGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416286 8 + 114371477 TTGCAGAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294881 8 + 637652 TTGCAGAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090666 8 + 81552678 TTGCAGAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354208 8 + 108979918 TTGCAGAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066341 8 - 111193037 TTGCAGAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457535 8 + 3644372 TTGCAGAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414238 8 - 10304083 TTGCAGAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514912 8 - 107702431 TTGCAGAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046070 8 + 1565135 TTGCAGAC i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496301 8 - 108792865 GTGCAGAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139892 8 - 7082604 GTGCAGGC i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3369057 8 + 7587287 GTGCGGAC i aotNan1.NW_018509326v1 C 0 I 70 s dasNov3.JH580157 618307 8 + 2232271 TTGCTAAC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 626287 442 + 5243153 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=93317.000000 s hg38.chr2_KI270769v1_alt 93461 23 + 120616 CCGATG-GCCGTAAAGCAT-----GGGGT s panTro5.chr2A 3555985 28 + 111504155 CCGATG-GCCGTAAAGCATTGGGGGGGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416294 21 + 114371477 CCGATG-GCCGTAAAGCAT-------GGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294889 28 + 637652 CCGATG-GCCGTAAAGCATTGGGGGGGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090674 18 + 81552678 TCCATG-GCCGTTAAACAT---------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354216 23 + 108979918 TCAATG-GCCGTTAAACAT-----GGGGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066349 23 - 111193037 TCAATG-GCCGTTAAACAT-----GGGGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457543 23 + 3644372 TCAATG-GCCGTTAAACAT-----GGGGC i macNem1.NW_012011978v1 C 0 I 25 s cerAty1.NW_012000820v1 3414246 23 - 10304083 TCAATG-GCCGTTAAACAT-----GGGGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3514920 23 - 107702431 TCAATG-GCCGTTAAACAT-----GGGGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046078 23 + 1565135 TCAATG-GCCGTTAAACAT-----GGGGC i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496309 18 - 108792865 TCGATG-GCCGGCAAACAT---------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139900 18 - 7082604 TCGATG-GCCGGTAAACCT---------- i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 618315 24 + 2232271 TCAATGAGCCATTAAACAA-----GCAGT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 626287 442 + 5243153 I e aotNan1.NW_018509326v1 3369065 70 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=49365.000000 s hg38.chr2_KI270769v1_alt 93484 28 + 120616 -------------GGGGGGGTGCCTGCCTGCATT---GCAGCTG s panTro5.chr2A 3556013 28 + 111504155 -------------GGGGCGGTGCCTGCCTGCATT---GCAGCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416315 28 + 114371477 -------------GGGGGGGTGCCTGCCTGCATT---GCAGCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294917 28 + 637652 -------------GGGGGGGTGCCTGCCTGCATT---GCAGCCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090692 30 + 81552678 --------------GGGGGGCACCTGCCTGCGTTGGAGCAGCCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354239 22 + 108979918 -------------------ATGCCAGCCTGAGTT---GGAGCCG i rheMac8.chr13 C 0 I 3 s macFas5.chr13 5066372 22 - 111193037 -------------------ACGCCAGCCTGAGTT---GGAGCCG i macFas5.chr13 C 0 I 3 s cerAty1.NW_012000820v1 3414269 22 - 10304083 -------------------ACGCCTGCCTGAGTT---GGAGCCG i cerAty1.NW_012000820v1 C 0 I 3 s chlSab2.chr14 3514943 22 - 107702431 -------------------ACGCCTGCCTGAGTT---GGAGCCG i chlSab2.chr14 C 0 I 3 s manLeu1.NW_012104432v1 1046101 22 + 1565135 -------------------ACGCCTGCCTGAGTT---GGAGCCG i manLeu1.NW_012104432v1 C 0 I 3 s calJac3.chr14 3496327 26 - 108792865 ---------------GAGCGCGCCTGCCTGAGGA---GGAGCCG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139918 22 - 7082604 --------------GGGGCGCAGCTGTCC--------GGAGCCG i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 618339 40 + 2232271 GGTCTTGCCTCGAGGTTCCATGTCCGTCAG-ACT---GCATGTG i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 626287 442 + 5243153 I e aotNan1.NW_018509326v1 3369065 70 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C e macNem1.NW_012011978v1 3457566 25 + 3644372 I a score=298645.000000 s hg38.chr2_KI270769v1_alt 93512 66 + 120616 TCAGAGCTGCACAGAGCCTGCGACACCCAGCCATGGCTTC-----------TGCCCACCAG-GCCACGTCCCTCCGCT s panTro5.chr2A 3556041 66 + 111504155 TCAGAGCTGCACAGAGCCTGCGACACCCAGCCATGACTTC-----------TGCCCACCAG-GCCACGTccctccgct i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416343 66 + 114371477 TCAGAGCTGCACAGAGCCTGCGACACCCAGCCATGACTTC-----------TGCCCACCAG-GCCACGTccctccgct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 294945 66 + 637652 TCAGAGCTGCACAGAGCCTGCGACACCCAGCCATGACTTC-----------TGCCCACCAG-GCCACGTccctccgct i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090722 66 + 81552678 TCGGAGCCGCGCAGAGCCTGCAACACTCACACATGACTTC-----------CGCCCACCAG-GCCAGGTCCCTCCACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354264 66 + 108979918 TCAGAGCCACGCAGAGCCTGCGACACCCAGCCATGACTTC-----------CGCCCACCGG-GGCGGGtccctctgct i rheMac8.chr13 I 3 C 0 s macFas5.chr13 5066397 66 - 111193037 TCAGAGCCACGCAGAGCCTGCGACACCCAGCCATGACTTC-----------CGCCCACCGG-GGCGGGTCCCTCTGCT i macFas5.chr13 I 3 C 0 s macNem1.NW_012011978v1 3457591 66 + 3644372 TCAGAGCCACGCAGAGCCTGCGACACCCAGCCATGACTTC-----------TGCCCACTGG-GGCGGGTCCCTCTGCT i macNem1.NW_012011978v1 I 25 C 0 s cerAty1.NW_012000820v1 3414294 66 - 10304083 TCAGAGCCACGCAGAGCCTGCGACACCCAGCCATGACTTC-----------CACCCACCGG-GGCGGGTCCCTCTGCT i cerAty1.NW_012000820v1 I 3 C 0 s chlSab2.chr14 3514968 66 - 107702431 TCAGAGCCGCGCAGAGCCTGCGACACCCAGCCATGACTTC-----------CGCCCACCGG-GTCGGGTCCCTCCGCT i chlSab2.chr14 I 3 C 0 s manLeu1.NW_012104432v1 1046126 66 + 1565135 TCAGAGCCACGCAGAGCCTGCGACACCCAGCCATGACTTC-----------CACCCACCGG-GGCGGGTCCCTCTGCT i manLeu1.NW_012104432v1 I 3 C 0 s calJac3.chr14 3496353 41 - 108792865 -------CCTCCGGAGCC---------------TGACTTC------------GCCCACCGG-GGCGGGTCCCTCCC-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139940 36 - 7082604 -----------CGGAGCC---------------CGACCTC------------CCCCG-CGG-GGCGGGTCCCCCCT-- i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 618379 74 + 2232271 ---CAGCAGCCTTGCCCCCGTAAGACCGAG-CACAACCTCAGTGTGCAGGCCACCTGCTAGCGACTAGTCCCTCCCCC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 626287 442 + 5243153 I e aotNan1.NW_018509326v1 3369065 70 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=824358.000000 s hg38.chr2_KI270769v1_alt 93578 117 + 120616 CCTCTGAATCCTTCCAGTTCTTCTTAGGCCA-CTTAAACGCCACCGTCTCCACGAAGTCCTGTCGGATCACCCTCATAGGAAGTGACAAACCACGTTTTGAACCCCTCTCCCCACCCA s panTro5.chr2A 3556107 117 + 111504155 cctctgaatccttccagttcttcttaggcca-cttaaacgccaccgtctccacgaagtcctgtcggatcaccctcataggaagtgaCAAACCACGTTTTGAACCCCTCTCCCCACCCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416409 117 + 114371477 cctctgaatccttccagttcttcttaggcca-cttaaacgccaccgtctccacgaagtcctgtcggatcaccctcataggaagtgaCAAACCACGTTTTGAACCCCTCTCCCCACCCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 295011 117 + 637652 cctctgaatccttccagttcttcttaggcca-cgtaaacgccaccgtctccacgaagtcctgtcggatcaccctcataggaagtgaCAAACCACGTTTTGAACCCCTCTCCCCACCCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090788 117 + 81552678 CCTCTAAATCCTTCCAGTTCTTCTTGGGCCA-CTTAAACGCCACTGTCTCCAAGAAGTCCTGCCGGATGACCCTCACAGGAAGTGACAAACCATATTCTGAATCCCTCTCCCCACCCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354330 117 + 108979918 cctctaaatccttccagttcttcttggacca-cttaaacgccaccgtctccacaaagtcctatggggtcaccctcacaggaagtgaCAAACCGCGTTCTAAACCCCTCTCCCCACCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066463 117 - 111193037 CCTCTAAATCCTTCCAGTTCTTCTTGGACCA-CTTAAACGCCACCGTCTCCACAAAGTCCTATGGGGTCACCCTCACAGGAAGTGACAAACCGTGTTCTAAACCCCTCTCCCCACCCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457657 117 + 3644372 CCTCTAAATCCTTCCAGTTCTTCTTGGACCA-CTTAAACGCCACCGTCTCCACAAAGTCCTATGGGGTCACCCTCACAGGAAGTGACAAACCGCGTTCTAAACCCCTCTCCCCACCCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414360 117 - 10304083 CCTCTAAATCCTTCCAGTTCTTCTTGGACCA-TTTAAACGCCACCGTGTCCACAAAGTCCTGTGGGGTGACCCTCACAGGAAGTGACAAACCACGTTCTAAACCCCTCTCCCCACCCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3515034 117 - 107702431 CCTCTAAATCCTTCCAGTTCTTCTTGGACCA-CTTAAACGCCACCGTCTCCACAAAGTCCTGTGGGGTCACCCTCACAGGAAGTGACAAACCGCGTTCTAAACCCCTCTCCCCACCCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046192 117 + 1565135 CCTCTAAATCCTTCCAGTTCTTCTTGGACCA-CTTAAACGCCACCGTGTCCACAAAGTCCTGTGGGGTCACCCTCACAGGAAGTGACAAACCACGTTCTAAACCCCTCTCCCCACCCA i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496394 115 - 108792865 GCCTTGAATCCTCCCAGTTCTTCCTGGGCCG--TTCAACACCCCCGTGTCCACGAAGTCCTGTGGGATCACCCTCGTGGGAAGTCACAAGCCACGTACTGAACCCCG-TCCCCACCCG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3139976 114 - 7082604 GCTCTGAATCCGTCCGGTTCTTCCTGGGCCG--GTGAACGCCCCGACCCCCACGAGGGCCTGTGGGGTCACCCTGGCAGGAAGCCACAAGCCGCGTCCCGAACCCCG-TCCCCACCC- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3369135 115 + 7587287 CCTCTGATCCCTTCCAGTTCTTCCTGGGCCG--TTAAACACCCCCGTGTCCACGAAGCCCTGTGGGATCATCCTCGTGGGAAGTCACAAGCCACGTCCTGAAGCCCG-TCCCCACCCG i aotNan1.NW_018509326v1 I 70 C 0 s dasNov3.JH580157 618453 104 + 2232271 TGTCTAAATCCTCGCAATTTTTCAAGCACCAGTTTACACGCCACTGCCTCCACCCAGTTTTATCAGATCGCCCTAGCCAGAAGTGAC--------------ACTCCTCTCTCCACACA i dasNov3.JH580157 C 0 I 44877 e mm10.chr12 91440470 1881 - 120129022 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 626287 442 + 5243153 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=97358.000000 s hg38.chr2_KI270769v1_alt 93695 15 + 120616 GCAAGCCCCTAGCCC s panTro5.chr2A 3556224 15 + 111504155 GCAAGCCCCTAGCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416526 15 + 114371477 GCAAGCCCCTAGCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 295128 15 + 637652 GCAAGCCCCTAGCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090905 15 + 81552678 GCAAGGCCCTAGCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354447 15 + 108979918 GCAAGCCCCCAGCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066580 15 - 111193037 GCAAGCCCCCAGCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457774 15 + 3644372 GCAAGCCCCCAGCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414477 12 - 10304083 GCAAGCCCCCAG--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3515151 15 - 107702431 GCAAGCCCCCAGCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046309 12 + 1565135 GCAAGCCCCCAG--- i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496509 15 - 108792865 GCAAGCCCCCAGCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3140090 15 - 7082604 GCACGCCGGCAGCCC i saiBol1.JH378218 C 0 I 35 s aotNan1.NW_018509326v1 3369250 15 + 7587287 GCAAGCCCCCAGCCC i aotNan1.NW_018509326v1 C 0 I 188 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 626287 442 + 5243153 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=59653.000000 s hg38.chr2_KI270769v1_alt 93710 18 + 120616 GCGAGCATAGGATTTCCT s panTro5.chr2A 3556239 18 + 111504155 ACGAGCATAGGATTTCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416541 18 + 114371477 ACGAGCATAGGATTTCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 295143 18 + 637652 GCGAGCATAGGATTTCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090920 18 + 81552678 GCGAGCATAGGGTTTCCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354462 17 + 108979918 CAGAGC-TAGGATTTCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066595 17 - 111193037 CGGAGC-TAGGATTTCCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457789 17 + 3644372 CGGAGC-TAGGATTTCCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414489 11 - 10304083 -------TAGTATTTCCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3515166 17 - 107702431 CGGAGC-TAGGATTTCCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046321 11 + 1565135 -------TAGGATTTCCT i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496524 17 - 108792865 GCGAGC-TGGGATGTCCT i calJac3.chr14 C 0 I 20 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3140105 35 - 7082604 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 626287 442 + 5243153 I e aotNan1.NW_018509326v1 3369265 188 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=870630.000000 s hg38.chr2_KI270769v1_alt 93728 161 + 120616 TTCTAGAACacgtgttctgtgaagggccagaggcaatatttgaggcctcgtgggccacatgc-tgtccctgttgcatatcctttttttt-gtttGGTTTGGTAAACTGCTTAAGCTGGCAGAACAACAGAACCCGCACATTCTCCACGCAGCCCAGCGCCCTT s panTro5.chr2A 3556257 162 + 111504155 TTCTAGAACacgtgttctgtgaagggccagaggcaatatttgaggcttcgtgggccacatgc-tgtccctgttgcatatcctttttttttgtttggtttGGTAAACTGCTTAAGCTGGCAGAACAACAGAACCCGCACATTCTCCACGCAGCCCAGCGCCCTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416559 161 + 114371477 TTCTAGAACacgtgttctgtgaagggccagaggcaatatttgaggcttcgtgggccacatgc-tgtccctgttgcatatcctttttttt-gtttGGTTTGGTAAACTGCTTAAGCTGGCAGAACAACAGAACCCGCACATTCTCCACGCAGCCCAGCGCCCTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 295161 161 + 637652 TTCTAGAACacctgttctgtgaagggccagaggcaatatttgaggcctcgtgggccacatgc-tgtccctgttgcatatcctttttttt-gtttGGTTTGGTAAACTGCTTAAGCTGGCAGAACAACAGAACCCGCACATTCTCCACGCAGCCCAGCGCCCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3090938 160 + 81552678 TTCTAGAACA-GTGttctgtgaagggccagacgcgatatttgaggcctcatgggccacatgc-tgtccctgttgcatatcctttttttt-gtttGGTTTGGTAAACTGCTTAAGCTGGCAGGACAACAGAACCCACACATTCTCCACGCAGTCCAGCATCCTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354479 160 + 108979918 TTCTAGAACacgtgttctgtgaagggccagagtcaatatctgaggcctcctgggccacatgc-tgtccctgttgcacatcctttttgt--gtttggtttGATAAACCGCTTAAGCTGGCAGGACAACAGAACCCGCACATTCTCCACGCAGCCCAGCACCCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066612 160 - 111193037 TTCTAGAACacgtgttctgtgaagggccagagtcaatatctgaggcctcctgggccacatgc-tgtccctgttgcacatccttTTTGT--GTTTGGTTTGATAAACCGCTTAAGCTGGCAGGACAACAGAACCCGCACATTCTCCACGCAGCCCAGCACCCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457806 161 + 3644372 TTCTAGAACACATGttctgtgaagggccagagtcaatatctgaggcctcctgggccatatgcttgtccctgttgcacatcctttttgt--gtttggtttGATAAACCGCTTAAGCTGGCAGGACAACAGAACCTGCACATTCTCCACGCAGCCCAGCACCCTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414500 160 - 10304083 TTCTAGAACacgtgttctgtgaagggccagagtcaatatctgaggcctcctgggcgacatgc-tgtccctgttgcacatcctttttgt--atttggtttGATAAACCGCTTAAGCTGGCAGGACAACAGAACCCGCACATTCTCCACGCAGCCCAGCACCCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3515183 160 - 107702431 TTCTAGAACacgtgttctgtgaagggccagagtcaatatctgaggcctcctgggccacatgc-tgtccctgttgcatatccttttttt--gtctggtttGATAAACCGCTTAAGCTGGCAGAACAACAGAACCCGCACATTCTCCACGCAGCCCAGCACCCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046332 159 + 1565135 TTCTAGAACacgtgttctgtgaagggccagagtcaatatctgaggcctcctgggccacatgc-tgtccctgttgcacatcctttttgt--gtttggtttGATAAACCGCTTAAGCTGGCAGGACAACAG-ACCCGCATATTCTCCACGCAGCCCAGCACCCTT i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496561 148 - 108792865 TTCCACAGCGCGTGCtctgtgaagggccagagtcggtatttgaggcctggtgggctgcacgc-agtccctgcggcgtattctttg-----gtttGGGTTGGTAAACCA--GGCGCTGGCAGGACAGCAGGATGCGCGCA--CTGCACGTGGCCAGGCC----- i calJac3.chr14 I 20 C 0 s saiBol1.JH378218 3140140 138 - 7082604 TTC--CAGAACGTGCCCCGTGAAGGGCCGGAGTCGGTATTGGAGGCCCTGTGGGCCACGCGC-TGTCCCCGCCGCATGTTCTTTG-----GTTTGGG-------------GGCGCTGGCAGGACAGCAGGACGCCCCCG--CTGCACGCGGCCAGGCCCAC-- i saiBol1.JH378218 I 35 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 626287 442 + 5243153 I e aotNan1.NW_018509326v1 3369265 188 + 7587287 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=35262.000000 s hg38.chr2_KI270769v1_alt 93889 5 + 120616 GGCCA s panTro5.chr2A 3556419 5 + 111504155 GGCCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416720 5 + 114371477 GGCCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 295322 5 + 637652 GGCCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3091098 5 + 81552678 GGCCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354639 5 + 108979918 GGCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066772 5 - 111193037 GGCCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457967 5 + 3644372 GGCCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414660 5 - 10304083 GGCCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3515343 5 - 107702431 GACCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046491 5 + 1565135 GGCCA i manLeu1.NW_012104432v1 C 0 C 0 s saiBol1.JH378218 3140278 5 - 7082604 GGCCG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3369453 5 + 7587287 GGCCA i aotNan1.NW_018509326v1 I 188 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 626287 442 + 5243153 I e calJac3.chr14 3496709 0 - 108792865 C e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=313369.000000 s hg38.chr2_KI270769v1_alt 93894 35 + 120616 TGCAGGGCTGTGCCTTCTGCCAGCTCTGGAGGCCC s panTro5.chr2A 3556424 35 + 111504155 TGCAGGGCTGTGCCTTCTGCCAGCTCTGGAGGCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416725 35 + 114371477 TGCAGGGCTGTGCCTTCTGCCAGCTCTGGAGGCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 295327 35 + 637652 TGCAGGGCTGTGCCTTCTGCCAGCTCTGGAGGCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3091103 35 + 81552678 TGCAGGGCTGTGCCTTCTGCCAGCTCTGGAGGCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354644 35 + 108979918 TGCAGGGCTGTGCCTTCTGCCGGCTCTGGAGGCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066777 35 - 111193037 TGCAGGGCTGTGCCTTCTGCCGGCTCTGGAGGCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3457972 35 + 3644372 TGCAGGGCTGTGCCTTCTGCCGGCTCTGGAGGCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414665 30 - 10304083 TGCAGGGCTGTGCCTTCTGCCGGCTCTGGA----- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3515348 35 - 107702431 TGCAGGGCTGTGCCTTCTGCCGGCTCTGGAGGCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046496 35 + 1565135 TGCAAGGCTGTGCCTTCTGCCGGCTCTGGAGGCCC i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496709 33 - 108792865 --CAGGGCGGTGCCTTCTGCCAGCTCTGGAGGCCC i calJac3.chr14 C 0 I 30 s saiBol1.JH378218 3140283 35 - 7082604 TGCAGGGCGGCGCCTTCTGCCAGCTCCGGAGGCCC i saiBol1.JH378218 C 0 I 30 s cebCap1.NW_016107454v1 626729 35 + 5243153 TGCAGGGCGGTGCCTTCTGCCAGCTCTGGAGGCCC i cebCap1.NW_016107454v1 I 442 I 91 s aotNan1.NW_018509326v1 3369458 35 + 7587287 TGCAGGCCGGTGCCTTCTGCCAGCTCTGGAGGTCC i aotNan1.NW_018509326v1 C 0 I 30 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=119285.000000 s hg38.chr2_KI270769v1_alt 93929 21 + 120616 AGGGGCTGGCATGGGCCTCCC s panTro5.chr2A 3556459 21 + 111504155 AGGGGCTGGCATGGGCCTCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416760 21 + 114371477 AGGGGCTGGCATGGGCCTCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 295362 21 + 637652 AGGGGCTGGCATGGGCCTCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3091138 21 + 81552678 GGGGGCTGGCATGGGCCTCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354679 21 + 108979918 CAGGGCTGGCATGGGCCTCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066812 21 - 111193037 CAGGGCTGGCATGGGCCTCCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3458007 21 + 3644372 CAGGGCTGGCATGGGCCTCCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414695 8 - 10304083 -------------GGCCTCCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3515383 21 - 107702431 CAGGGCTGGCATGGGCCTCCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046531 21 + 1565135 CAGGGCTGGCATGGGCCTCCA i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3496772 21 - 108792865 CGGGGCCGGCATGGGGCTCAG i calJac3.chr14 I 30 C 0 s saiBol1.JH378218 3140348 20 - 7082604 C-GGGCCGGCATGGGGCTCAG i saiBol1.JH378218 I 30 C 0 s aotNan1.NW_018509326v1 3369523 21 + 7587287 CGGGGCCGGCATGGGCCTCCC i aotNan1.NW_018509326v1 I 30 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 626764 91 + 5243153 I e colAng1.NW_012118821v1 3408755 0 - 13651311 C a score=276167.000000 s hg38.chr2_KI270769v1_alt 93950 42 + 120616 GTCCTGAGCCCCCCATGTACATTGCACCCATACTGGGAACG-C s panTro5.chr2A 3556480 42 + 111504155 GTCCTGAGCCCCCCATGTACATTGCACCCATACTGGGAACG-C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416781 42 + 114371477 GTCCTGAGCCCCCCATGTACATTGCACCCATACTGGGAACG-C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 295383 42 + 637652 GTCCAGAGCCCCCCATGTACATTGCACCCATACTGGGAACG-C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3091159 42 + 81552678 GTCCTGAGCCCCCCATGTACATTGCACCCATACTGGGAATG-C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354700 42 + 108979918 GTCCTGAGCCCCCCATGTGCATTGCACTCACACAGGGAACG-C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066833 41 - 111193037 GTCCTGAGCCCCCCATGTGCATTGCACTCACACAGGGAACG-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3458028 42 + 3644372 GTCTTGAGCCCCCCATGTGCATTGCACTCACACAGGGAACG-C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414703 42 - 10304083 GTCCTGAGCCCCCCATGTGCATTGCACTCACACAGGGAACG-C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3515404 42 - 107702431 GTCCTGAGCCCCCCATGTGCATTGCACTCACACAGGGAACG-C i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046552 42 + 1565135 GTCCTGAGCCCCCCATGTGCATTGCACTCACACAGGGAACG-C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3408755 42 - 13651311 GTCCTGAGCCCCCCATGTGCATTGCACTCACGCAGGGAACG-C i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3496793 40 - 108792865 GACGGGAG-GCCTCACGTGCACTGCAGCCACACCAGGAACA-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3140368 40 - 7082604 GCCGGGAG-GCCTCACGTGCACTGCAGCCGCACCCGGAACA-- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3369544 40 + 7587287 GTCCTGA--GCCCCACGTGCACTGCAGCCACACCAGGAACAC- i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 626764 91 + 5243153 I a score=499845.000000 s hg38.chr2_KI270769v1_alt 93992 48 + 120616 CCCCAGGATCTGCTGCGAGACCCCCAAGGACCAGCTTCTGCAGTCCTG s panTro5.chr2A 3556522 48 + 111504155 CCCCAGGATCTGCTGCGAGACCCCCAAGGACCAGCTTCTGCAGTCCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416823 48 + 114371477 CCCCAGGATCTGCTGCGAGACCCCCAAGGACCAGCTTCTGCAGTCCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 295425 48 + 637652 CCCCAGGATCTGCTGCGAGACCCCCAAGGACCAGCTTCTGCAGTCCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3091201 48 + 81552678 CCCCGGGATCTGCTGCGAGACCCCCAAGGACCAGCTTCTGCAGTCCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354742 48 + 108979918 CCCTGGGATCTGCTGTGAGACCCCCAAGGACCAGCTTCTGCAGTCCCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066874 48 - 111193037 CCCCGGGATCTGCTGCGAGACCCCCAAGGACCAGCTTCTGCAGTCCCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3458070 48 + 3644372 CCCCGGGATCTGCTGCGAGAGCCCCAAGGACCAGCTTCTGCAGTCCCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414745 48 - 10304083 CCCCAGGATCTGCTACAAGACCCCCAAGGACCAGCTTCTGCAGTCCTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3515446 48 - 107702431 CCCCGGGATCTGCTGCGAGACCCCCAAGGACCAGCTTCTGCAGTCCTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046594 48 + 1565135 CCCCGGGATCTGCTGCGAGACCCCCAAGGACCAGCTTCTGCAGTCCTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3408797 48 - 13651311 CCCCGGGATCTGCTGCGAGACCCCCACGGACCAGCTTCTGCAGTCCTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3496833 48 - 108792865 CCCCGGGATCTGCTGCAAGACCCCCAAGGACCAGCTCCTGCAGTCCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3140408 48 - 7082604 CCGCGGCATCTGCTGCAGGACCCCCAGGGACCAGCTCCTGCAGTCCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 626855 48 + 5243153 CCCCGGGATCTGCTGCAGGTCCCCCAGGGACCAGCTTCTGCAGTCCTG i cebCap1.NW_016107454v1 I 91 I 9 s aotNan1.NW_018509326v1 3369584 47 + 7587287 -CCCGGGATCTGCTGCGAGACCCCCAGGGACCCGCTTCTGCAGTCCTG i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I a score=268657.000000 s hg38.chr2_KI270769v1_alt 94040 39 + 120616 GAAGGGCTCTCCTGACCCCCAAGTCCGCCATCTTCTGAT s panTro5.chr2A 3556570 39 + 111504155 GAAGGGCTCTCCTGACCCCCAAGTCCGCCATCTTATGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416871 39 + 114371477 GAAGGGCTCTCCTGACCCCCAAGTCCGCCATCTTCTGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 295473 39 + 637652 GAAGGGCTCTCCTGACCCCCAAGTCCGCCATCTTCTGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3091249 39 + 81552678 GAAGGGCTCTCCTGACCCCCAACTCTGCCATCTTCTGAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354790 39 + 108979918 GAAGGGCTCTTCTGACCCCCAAGTCCGCCATCTTCTGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066922 39 - 111193037 GAAGGGCTCTCCTGACCCCCAAGTCCGCCATCTTCTGAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3458118 39 + 3644372 GAAGGGCTCTCCTGACCCCCAAGTCCGCCATCTTCTGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414793 39 - 10304083 GAAGGACTCTCCTGACCCCCAAGTCCGCCATCTTCTGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3515494 39 - 107702431 GAAGGGCTCTTCTGACCCCCAAGTCCGCCATCTTCTGAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046642 39 + 1565135 GAAGGGCTCTCCTGACCCCCAAGTCCGCCATCTTCTGAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3408845 39 - 13651311 GAAGGGCTCTCCTGACCCCCAAGTCCGCCATCTTCTGAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3496881 24 - 108792865 ---------------ACCCCGAGTCTACCATCTTCCTAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3140456 24 - 7082604 ---------------ACCCCGAGTCCGCCATCTTCCTAG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3369631 24 + 7587287 ---------------ACCCCGAGTCTGCCGTCCTCCTAG i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 626903 9 + 5243153 I a score=765022.000000 s hg38.chr2_KI270769v1_alt 94079 81 + 120616 GGTGGCAGGTGGGCACAGTCACTGGCTGAGCGACCAAGGGTCAGTGAGATTACTAGGCCGGCGCTGCACCCAACTGAAatg s panTro5.chr2A 3556609 81 + 111504155 GGTGGCAGGTGGGCACAGTCACTGGCTGAGCGACCAAGGGTCAGTGAGATTACTAGGCCAGCGCTGCACCCAACTGAAatg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416910 81 + 114371477 GGTGGCAGGTGGGCACAGTCACTGGCTGAGCGACCAAGGGTCAGTGAGATTACTAGGCCAGCGCTGCACCCAACTGAAatg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 295512 81 + 637652 GGTGGCAGGTGGGCACAGTCACTGGCTGAGCGACCAAGGGTCAGTGAGATTACTAGGCCGGCGCTGCACCCAACTGAAatg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3091288 81 + 81552678 GGTGGCAGGTGGGCACAGTCACTGGCTGAGCGACCGAGGGTCACTGAGATTACTAGGCCGGCGCTGCACCCAACTGAAatg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354829 81 + 108979918 GGTGTCAGGTGGCCACAGTCACTGGCTGAGCGACCGAGGGTCACTGAGATTACTAGGCGGGCGCTGCACCCAACTGAAATG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5066961 81 - 111193037 GGTGTCAGGTGGCCACAGTCACTGGCTGAGCGACCGAGGGTCACTGAGATTACTAGGCGGGCGCTGCACCCAACTGAAATG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3458157 81 + 3644372 GGTGTCAGGTGGCCACAGTCACTGGCTAAGCGACCGAGGGTCACTGAGATTACTAGGCGGGCGCTGCATCCAACTGAAATG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414832 81 - 10304083 GGTGTCAGGTGGGCACAGTCACTGGCTGAGCGACCGAGGGTCACTGAGATTACTAGGCGGGCGCTGCACCCAACTGAAATG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3515533 81 - 107702431 GGTGTCAGGTGGGCACAGTCACTGGCTGAGCGACCAAGGGTCACTGAGATTACTAGGCGGGCGCTGCACCCAACTGAAATG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046681 81 + 1565135 GGTGTCAGGTGGCCACAGTCACTGGCTGAGCGACCGAGGGTCACTGAGATTACTAGGCGGGCGCTGCACCCAACTGAAATG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3408884 81 - 13651311 GGTGTCAGGTGGGCAGAGTCACGGGCTGAGCGACCGGGGGTCACTGAGATTACTAGGCGGGCGCTACACCCAACTGAAATG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3496905 81 - 108792865 GGTGTCAGGTGGGTGCAGTCCCTGGCTGACCGACCAGGGGTCCCTGAGGTTATTAGGCCAGCACTGCACACAGCTGAAATG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3140480 80 - 7082604 GGTGTCAGGTGGGTGCAGTCCCTGGCTGACC-ACCGAGGGTCCCTGAGGCTGCTGGACCAGCGCTGCACACAACTGAAATG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 626912 80 + 5243153 GGTGTCAGGTGGGTGCAGTCCCTGGCTGACG-ACCGAGGGTCCCCGAGGTTACTAGGCCAGCGCTGCACACAACTGAAATG i cebCap1.NW_016107454v1 I 9 I 8 s aotNan1.NW_018509326v1 3369655 81 + 7587287 GGTGTCAGGTGGGTGCAGTCCCTGGCTGACCGACCGAGGGTCCCTGAGGTTACTAGGCCAGCACTGCACACAACTGAAATG i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I a score=133408.000000 s hg38.chr2_KI270769v1_alt 94160 41 + 120616 aactcacgt-gtcctcacaactcctagcagcagatgctgtca s panTro5.chr2A 3556690 41 + 111504155 aactcacgt-gtcctcacaactcctagcagcagatgctgtcg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3416991 41 + 114371477 aactcacgt-gtcctcacaactcctagcagcagatgctgtcg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 295593 41 + 637652 aactcacgt-gtcctcacaactcctagcagcagatgctgtcg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3091369 42 + 81552678 aactcacatggtcctcacaactcctagcagcagatgctgtca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354910 35 + 108979918 AACTCACGT-GGTC------CTCCTAGCAGCAGATGCTCTCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5067042 35 - 111193037 AACTCACGT-GGTC------CTCCTAGCAGCAGATGCTCTCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3458238 35 + 3644372 AACTCACGT-GGTC------CTCCTAGCAGCAGATGCTCTCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414913 35 - 10304083 AACTCACGT-GGTC------CTCCTAGCAGCAGATGCTCTCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3515614 33 - 107702431 AACTCACGT-GGTC------CTCCTAGCAGCAGATG--CTCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046762 35 + 1565135 AACTCACGT-GGTC------CTCCTAGCAGCAGATGCTCTCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3408965 35 - 13651311 AACTCACGT-GGTC------CTCCTAGCAGCAGATGCTCTCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3496986 29 - 108792865 -------------CCCacaacgccacgcaggaggtactgtca i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3140560 16 - 7082604 -------------CCCGCAACGCCTCCCA------------- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3369736 8 + 7587287 -------------CTCACAAC--------------------- i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 626992 8 + 5243153 I a score=5190072.000000 s hg38.chr2_KI270769v1_alt 94201 613 + 120616 gcctcgcatcctacaggaaaggaaccatc-gccaaaagacgctgaggaacatcccgagggtcacagggacagtgcagagccaggaCCAGCCCGGCCCATGGTCCCCCAGCGTGCACCACCTGGCCC----GGCACTGT-GTGCTCAGCCATGAGGACTGGGAAGAGTCCTGCCCACAGCTCAAGTGTCTACACCGCACTGCCATCCAGGCTGTGAGCCGCTGCTGAGCATGGGGAATGTG--------------------GCTGCTGCAGAGACGTTATGAAACACTTCTaaaagaatgtaaaagatctcattaataattt-----tgagtacctgttaaaatgatagtaattttggatctagtagattaaataaaacatattattaaaattaagatgacctttgaacatttttaacgtggctactagaaaacttt-aagt--tacgtatgtggcgcccatttgtggctccc-attctgtttctgttg---gatggtgcCAAAGAAACCAACACGTAAAAGCCCCTGCAGAGGAGCCGCTGCTTTGCCAATGGTTAGTGGTCAGTGTGGGTTCTGCCCTCTGGGTTCCTGGCAACCAGGGCTGCTCTCTGAGGGCTGAGGTTGCCACGGGCTAGGCAGATACTGGCCCTGC s panTro5.chr2A 3556731 613 + 111504155 gcctcgcatcctacaggaaaggaaccatc-gccaaaagatgctgaggaacatcccgagggtcacagggacagtgcagagccaggaCCAGCCCGGCCCATGGTCCCCCAGTGTGCACCACCTGGCCC----GGCACTGT-GTGCTCAGCCATGAGGACCGGGAAGAGTCCTGCCCACAGCTCAAATGTCTACACCGCACTGCCATCCAGGCTGTGAGCCGCTGCTGAGCATGGGGAATGTG--------------------GCTGCTGCAGAGACGTTATGAAACACTTCTaaaagaatgtaaaagatctcattaataattt-----tgagtacctgttaaaatgatagtaattttggatctagtagattaaataaaacatattattaaaattaagatgacctttgaacatttttaacgtggctactagaaaacttt-aagt--tacgtatgtggcgcccatttgtggctccc-attctgtttctgttg---gatggtgcCAAAGAAACCAACACGTAAAAGCCCCTGCAGAGGAGCCGCTGCTTTGCCAATGGTTAGTGGTCAGTGTGGGTTCTGCCCTCTGGGTTCCTGGCAACCAGGGCTGCTCTCTGAGGGCTGAGGTTGCCACGGGCTAGGCAGATGCTGGCCCTGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3417032 613 + 114371477 gcctcgcatcctacaggaaaggaaccatc-gccaaaagatgctgaggaacatcccgagggtcacagggacagtgcagagccaggaCCAGCCCGGCCCATGGTCCCCCAGTGTGCACCACCTGGCCC----GGCACTGT-GTGCTCAGCCATGAGGACCGGGAAGAGTCCTGCCCACAGCTCAAGTGTCTACACCGCACTGCCATCCAGGCTGTGAGCCGCTGCTGAGCATGGGGAATGTG--------------------GCTGCTGCAGAGACGTTATGAAACACTTCTaaaagaatgtaaaagatctcattaataattt-----tgagtacctgttaaaatgatagtaattttggatctagtagattaaataaaacatattattaaaattaagatgacctttgaacatttttaacgtggctactagaaaacttt-aagt--tacgtatgtggcgcccatttgtggctccc-attctgtttctgttg---gatggtgcCAAAGAAACCAACACGTAAAAGCCCCTGCAGAGGAGCCGCTGCTTTGCCAATCGTTAGTGGTCAGTGTGGGTTCTGCCCTCTGGGTTCCTGGCAACCAGGGCTGCTCTCTGAGGGCTGAGGTTGCCACGGGCTAGGCAGATGCTGGCCCTGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 295634 612 + 637652 gcctcgcatgctacaggaaaggaaccatc-gccaaaagacgctgaggaacatcccgagggtcacagggacagtgcagagccaggaCCAGCCCGGCCCATGGTCCCCCAGCGTGCACCACCTGGCCC----GGCACTGT-GTGCTCAGCCATGAGGACCGGGAAGAGTCCTGCCCACAGCTCAAGTGTCTACACCGCACTGCCATCCAGGCTGTGAGCCGCTGCTGAGCATGGGGAATGTG--------------------GCTGCTGCAGAGACGTTATGAAACACTTGTaaaagaatgtaaaagatctcattaataattt-----tgagtacctgttaaaatgatagtaattttggatctagtagattaaataaaacatattattaaaattaagatgacctttgaacatttttaacgtggctactagaaaacttt-aagt--tacgtatgtggcgcccatttgtggctccc-attctgtttctgttg---gatggtgcCAAAGAAACCAACATGTAAAAGCCCCTGCAGAGGAACTGCTGCTTTGCCAATGGTTAGTGGTCAGTGTGGGTTCTGCCCTCTGGGTTCCTGGCAACCAGGGCTGCTCTTTGAGGGCTGAGGTTGCCGC-GGCTAGGCAGATGCTGGCCCTGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3091411 603 + 81552678 gcctcgcatcttacaagaaaggaaccatc-tccagaagacactgagcaacatcctgagggtcacagggacagtgcagagccaggaccagcccagCCCATGGTCCCCCAGTGTGCACCGCCTGGCCC----GGCATTGT-GTGCTCAGCCACGAGGACCAGGAAGAGTCCTGCCCACAGCCCAAGTGTCTACACTGCACTGCCATCCAGGCTGTGAGCCGCCGCTGAGCATGGGGAATGTG--------------------GCTGCTGCAGAGACGTTATGAAACACTTCTaaaagaatgtaaaagatctcattaataattt-----tgagtacctgttaaaatgatagtaattttggatatggtagattaaataaaacatattattaaaattaagatgacctttgaacatttttaacgtggcgactagaaaacttt-aagt--tacgtgtgtggcgcccattTGTGGCGCCCAATTCTGTTTCTGTTG---GATGGTGCCAAAGAAACCAACACGTAAAAGGCCCTGCAGAGGAGCCGCTGCTTTGCCGA-------TGGTCAGTGTGGGTTCTGCCCTGTGGGTTCCTGGCGACCAGGGCTGC----TGAGGGCTGAGGCTGCCACGGGCTAGGCAGATGCTGGCCCTGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3354945 625 + 108979918 GCCGCACACCTTACAGGAAAGGAACCATC-GCCAAAACAGGCTGAGCAACATCCCGAGGGTCACAGGGACAGTGCAGAGCCAGGACCAGCCTGGCCTACGGCACCCCAGCGTGCAC-----GGCCC----GGCACTGT-GTGCTCAGCCACGAGGACCAGGAAGAGTCCTGCCCACAGCTC-AGTGTCTACACCGCAGTGCCATCCAGGCTGTGGGCCgctgcagagcacggggagcgtggcaggtcctacctgagacgtgctgctgcacagacttaatgaaacacttctaaaagaa--taaaagatctcattaatcattttatagtgagtacctgttaaaatgatagtaattttggatacagtcgattaaataaaacatattattaaaattaagatgacctttgaacgtttttaacgtggctactagaaaac--t-aagttatacgtatgtggcg-ccatttgtggctccc-attctgtttctattg---gaaggtgcCAAAGAAACCAACACATAAAAGCCCCTGCAGAGGAACTGCTGCTTTGCCAATGGTCACTGGATG----GGTTTCTGCCCAGTGGGTTCCTGGCGACCAGGGCTGCTGTCTAAGGGCTGAGGCTGCCACGGGCTAGGCAGATGCCGGCCCTGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5067077 625 - 111193037 GCCGCGCACCTTACAGGAAAGGAACCATC-GCCAAAACAGGCTGAGCAACATCCCTAGGGTCACAGGGACAGTGCAGAGCCAGGACCAGCCCGGCCCACGGCACCCCAGCGTGCAC-----GGCCC----GGCACTGT-GTGCTCAGCCACGAGGACCAGGAAGAGTCCTGCCCACAGCTC-AGTGTCTACACCGCAGTGCCATCCAGGCTGTGGGCCgctgcagagcacggggagcgtggcaggtcctacctgagacgtgctgctgcacagacttcatgaaacacttctaaaagaa--taaaagatctcattaatcattttatagtgagtacctgttaaaatgatagtaattttggatacagtcgattaaataaaacatattattaaaattaagatgacctttgaatgtttttaacgtggctactagaaaac--t-aagttatacgtatgtggcg-ccatttgtggctccc-attctgtttctattg---gaaggtgcCAAAGAAACCAACACATAAAAGCCCCTGCAGAGGAACTGCTGCTTTGCCAATGGTCACTGGATG----GGTTTCTGCCCAGTGGGTTCCTGGCGACCAGGGCTGCTGTCTAAGGGCTGAGGCTGCCACGGGCTAGGCAGATGCCGGCCCTGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3458273 625 + 3644372 GCCGCGCACCTTACAGGAAAGGAACCATC-GCCAAAACAGGCTGAGCAACATCCCGAGGGTCACAGGGACAGTGCAGAGCCAGGACCAGCCCGGCCCACGGCACCCCAGCGTGCAC-----GGCCC----GGCACTGT-GTGCTCAGCCACGAGGACCAGGAAGAGTCCTGCCCACAGCTC-AGTGTCTACACCGCAGTGCCATCCAGGCTGTGGGCCGCCGCAGAGCACGGGGAGCGTGGCAGGTGCTACCTGAGACGTGCTGCTGCACAGCCTTCATGAAACACTTCTaaaagaa--taaaagatctcattaatcattttatagtgagtacctgttaaaatgatagtaattttggatacagtcgattaaataaaacatattattaaaattaagatgacctttgaatgtttttaacgtggctactagaaaac--t-aagttatacgtatgtggcg-ccatttgtggctccc-attctgtttctattg---gaaggtgcCAAAGAAACCAACACATAAAAGCCCCTGCAGAGGAACTGCTGCTTTGCCAATGGTCACTGGATG----GGTTTCTGCCCAGTGGGTTCCTGGCGACCAGGGCTGCTGTCTAAGGGCTGAGGCTGCCACGGGCTAGGCAGATGCCGGCCCTGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3414948 626 - 10304083 GCCGCGCACCTTACAGGAAAGGAACCATCAGCCAAAACACGCTGAGCGACATCCCGAGGGTCACAGGGACAGTGCAGAGCCAGGACCAGCCCGGCCCATGGCACCCCAGCGTGCAC-----GGCCC----GGCACTGT-GTGCTCAGCCACGAGGACCAGGAAGAGTCCTGCCCACAGCTC-AGTGTCTACACCGCAATGCCATCCAGGCTGTGAGCCgctgcagagcacggggagcgtggcaggtcctacctgagacgtgctgctgcagagacttcatgaaacacttctaaaagaa--taaaagatctcattaatcattttatagtgagtacctgttaaaatgatagtaattttggatacagtcgattaaataaaacatattattaaaattaagatgacctttgaacgtttttaacgtggctactagaaaac--t-aagttatacgtatgtggcg-ccatttgtggctccc-attctgtttctattg---gaaggtgcCAAAAAAACCAACACATAAAAGCCCCTGCAGAGGAACTGCTGCTTTGCCAATGGTCACTGGATG----GGTTTCTGCCCAGTGGGTTCCTGGCGACCAGGGCTGCTGTCTAAGGGCTGAGGCTGCCACGGGCTAGGCAGATGCCGGCCCTGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3515647 597 - 107702431 GCCGCGCACCTTACAGGAAAGGAACCATC-GCCAAAACACGCTGAGCAACATCCCGAGGGTCACAGGGACAGTGCAGAGCCAGGACCAGCCCGGCCCATGGTACCC--------------------------------------CAGCCACGAGGACCAGGAAGAGTCCTGCCCACAGCTC-AGTGTCTACACTGCAATGCCATCCGGGCTGTGAGCCGCTGCAGAGCACGGGGAGCGTGGCAGGTCCTACCTGAGACGTGCTGCTGCAGAGACTTCATGAAACACTTCTaaaagaa--taaaagatctcattaatcattttatagtgagtacctgttaaaatgatagtaattttggatacagtcgattaaataaaacatattattaaaattaagatgacctttgaacgtttttaacgtggctactagaaaac--t-aagttatacgtatgtggcg-ccatttgtggctccc-attctgtttctattg---gaaggtgcCAAAGAAACCAACACATAAAAGCCCCTGCAGAGGAACTGCTGCTTTGCCAATGGTCACTGGATG----GGTTTCTGCCCAGTGGGTTCCTGGCGACCAGGGCTGCTCTCTAAGGGCTGAGGCTGCCACGGGCTAGGCAGATGCCAGCCCTGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1046797 625 + 1565135 GCCGCGCACCTTACAGGAAAGGAACCATC-GCCAAAACACGCTGAGCAACATCCCGAGGGTCACAGGGACAGTGCAGAGCCAGGACCAGCCCGGCCCATGGCACCCCAGCGTGCAC-----GGCCC----GGCACTGT-GTGCTCAGCCACGAGGACCAGGAAGAGTCCTGCCCACAGCTC-AGTGTCTACACCGCAATGCCATCCAGGCTGTGAGCCgctgcagagcacggggagtgtggcaggtcctacctgagacgtgctgctgcagagacttcatgaaacacttctacaagaa--taaaagatctcattaatcattttatagtgagtacctgttaaaatgatagtaattttggatacagtcgattaaataaaacatattattaaaattaagatgacctttgaacgtttttaacgtggctactagaaaac--t-aagttatacgtatgtggcg-ccatttgtggctccc-attctgtttctattg---gaaggtgcCAAAGAAACCAACACATAAAAGCCCCTGCAGAGGAACTGCTGCTTTGCCAATGGTCACTGGATG----GGTTTCTGCCCAGTGGGTTCCTGGCGACCAGGGCTGCTCTCTAAGGGCTGAGGCTGCCACGGGCTAGGCAGATGCCGGCCCTGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3409000 620 - 13651311 GCCGCTCACCTTACAGGAAAGGAACCATC-GCCAAAACACGCTGAGCAACATCCCCAGGGTCCCAGGGACGGTGCAGAGCCAGGAGCAGCCCGGCCCATGGTACCCCAGTGTGCAC-----GGCCC----GGCACCGT-GTGCTCA-CCACGAGGACCAGGAAGAGTCCTGCCCACAGCTC-AGGGTCTACACCGCAATGCCATCCAGGCTGTGAGCCgctgcagagcatggggaacgtggcaggtcctacctgagacgtgctgctgcagagacttcatgaaacacttctaaaagaa--taaaagatctcattaatcattttatattgagtacctgttaaaatgatagtaattttggatatagtcaatt-----aaacatattattaacattaagatgacctttggacgcttttaacgcagctactagaaaac--t-aagttatacgtatgtggcgcccatttgtggctccc-attctgtttctattg---gaaggtgcCAAAGGAACCAACACGCAAAAGCCCCTGCAGAGGAACTGCTGCTTTGCCAGTGGTCACTGGATG----GGTTTCTGCCCAATGGGTTCCTGGCGACCAGAGCTGCTCTCTAAGGGCTGAGGCTGCCACGGGCTAGGCAGATGCTGGCCCTGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3497015 627 - 108792865 gcctcgcaccttacggaaatgaaaccatc-cccaaaagacgctgggcaacatcccgagggtcacagaaacagtgcagagccaggaccagcacggcccgtggtcccccagcatgcac-----tgcccgactggcaccaccatgctccGCCAGGAGGACCAGGAAGAGTCCTGCCCACGGCTC-AG-GGCTACACCAC-CTGCCACCCAGGCTGGGAGCCgctgctgagtgtgggaaacgtggcacatcctacctgagatgtgctgctgcagagacttgatgaaacacttctaaaaggtgttaaaag-tcccagtaataatttcatattgaatacctgttaagacgataggaattttggttatggcagattagataaaa-atatcattaaaattaagatgcccttcaaacgtgtttgacgtggctactagaaaacttg-aagt--tacgtttgtggagcccatttgtggctccc-gtcctgtttctgttg---gatggggctTAAGAACCCAACGCGGAAAAGCCCCTGCAGAGGAGCC-CTGCTTTGCCGATGGTCAGTGTGTG----GCTTTCTGCCGGAC-GGTTCCAGGCAGCCGTGGCTGCTCTCTGGGGACTGAGGCTGCCACGGCCTAGGCAGATGCTGGCCCTGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3140576 597 - 7082604 ---------CCTACGGAAAAGGAACCATC-CCCAAAAGACCCTGGGCAACATCCCGAGGGGCACAGCCACAGCGCCGAGCCAGGACCAGCGCGGCCCAAGGTCCCCCAGCGTGCAC-----TGCCC-ACTGGCACCGC---GCTCCGCCAGGAGGACCAGGCAGAGTCCTGCCCACGGCTC-AG-GTCTACACCGCGCTGCCACCCAGGCTGGGAGCCGCCGCTGAGTGCAGGGCACGTGGCACGTCCTATGTGAGATGTGCTGCTGCAGAGACTTGATGAAACACTTCTaaaaggtgttaaaag-tctcagtaataattttatattgagtacctgttaaaatgataggaattttggttacagcagattaaataaaa-----cattaaaattcagatgcccttcaaacgtgtttaacgtggctgctagaaaacttgaaagt--tacatatgtggagcccattTGTGGCT-CG-GTCCTGTTTCTATGGGATGATGGTGCCAAAGAACCCAACACGGGAAAGCCCCTGCCGAAGAGCC-CTGCTTTGCCGA-AGTCGGTGTGTG----GCTTTCTGCCCAAG-GGTTCCAGGCAGCCATGGCTGCTCTCTGGGGA----------------CTAGGCAGACGCTGGCCCTGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 627000 626 + 5243153 GCCTCGCACCTTACGGAAAAGGAACCATC-CCCAAAAGATGCTGGGCAACATCCCGAGGGTCACAGCAACAGTGCCAAGCCAGGACCAGCGCGGCTCACGATCCCCCAGCGTGCAC-----TGCCCGGCTGGCACCGC---GCTCGGCCAGGAGGACCTGAAAGAGTCCTGCCCGGGGCTC-AG-GTCTACACCACGCTGCCACCCAGGCTGGGAGCCGCCGCTGAGTGTGGGGAACGTGGCACGTCCTACATGAGACGTGCTGCTGCAGAGATTTGATGAAACACTTCTaaacggatgtaaaag-tctcagtaacaattgtatattgagtacttgttaaaatgataggaattttggttatagcagattagataaaacatgttataaaaattaagatgcccttcaaacgtatttaacttggctactagaaaacttg-aagt--tacatatgtggagcccgtttgtggctccc-atcctgtttctattg---gatggggcCAAAGAACCCAACACAAAAAAGCCCCTGCAGAAGAGCC-CTGCTTTGCCGATGGTCAGTGTGTG----GCTTTCTGCCCAAT-GGTTCCAGGCAGCCATGGCTGCTCTCTGGGGACTGAGGCTGCCACGGGCTAGGCAGATGCTGGCCCTGC i cebCap1.NW_016107454v1 I 8 I 27 s aotNan1.NW_018509326v1 3369744 621 + 7587287 GCCTCGCACCTTACGGAAAAGGAACCATC-CCCAAAAGACGCTGGGCAACATCCCCAGGGTCACAGCAACAGTGCAGAGCCAGGACCAGCGCGGCCCATGGTCTTCCAGCATGCAC-----TGCCCGACTGGCACCGC---GCTCCGCC---AGGACCAGGAAGAGTCCTGCCCACAGCTC-AG-GTCTACAGCAG-CTGCCACCCAGGCTGGGAGCCACCGCTGAGTGTGGGGAACGTGGCACGTCCTACCTGAGATGTGCTGCTGCAGAGACTTGATGAAACGCTTCTaaaaggtgttaaaag-tctcagtaataattttatattgagtacctgttaaaatgataggaattttggttatagcagattagataaaacatattattaaaattaagatgcccttcaaacg-gtttaacgtggcgactagaaaacttg-aagt--tacatatgtggcgcccattTGTGGCTCCC-GTCCTGTTTCTATTG---GGTGGCGCCAAAGAACCCAACACGGAAAAGCCCCTGCAGAAGAGCC-CTGCTTTGCCCATGGTCAGTGTGTG----GCTTTCTGCCCGAC-GGTTCCAGGCAGCCATGGCTGCTCTCTGGGGACTGAGGCCACCACGGGCTAGGCAGATGCTGACCGTGC i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I a score=211098.000000 s hg38.chr2_KI270769v1_alt 94814 34 + 120616 AGCCCTCACTCTCCGGAGGGC-----------------------------------------------------------------GTGGGGCATGGGA s panTro5.chr2A 3557344 34 + 111504155 AGCCCTCACTCTCTGGAGGGC-----------------------------------------------------------------GTGGGGCATGGGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3417645 34 + 114371477 AGCCCTCACTCTCTGGAGGGC-----------------------------------------------------------------GTGGGGCATGGGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 296246 99 + 637652 AGCCCTCACTCTCCGGAGGGCGTGGGGCATGGGATGGGATGTTTGAGAGGACGTGGGGCATGATGGGACGGGAAGTTTCAGTGGGTGTGGGGCATGGGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092014 34 + 81552678 AGCCCACACCCTCTGGAGGGC-----------------------------------------------------------------GTGGGGCATGGGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3355570 34 + 108979918 AGCCCTCACCCTCCAGAgggc-----------------------------------------------------------------gtggggcatggga i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5067702 34 - 111193037 AGCCCTCACCCTCCAGAGGGC-----------------------------------------------------------------GTGGGGCATGGGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3458898 34 + 3644372 AGCCCTCACCCTCCAGAgggc-----------------------------------------------------------------gtggggcatggga i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3415574 34 - 10304083 AGCCCTCACTCTCCAGAGGGC-----------------------------------------------------------------GTGGGGCATGGGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3516244 34 - 107702431 AACCCTCACTCTCCAGAGGGC-----------------------------------------------------------------GTGGGGCATGGGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1047422 34 + 1565135 AGCCCTCACCCTCCAGAGGGC-----------------------------------------------------------------GTGGGGCATGGGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3409620 34 - 13651311 AGCCCTCGCCCTCCAGAGGGC-----------------------------------------------------------------GTGGGGCATGGGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3497642 33 - 108792865 CGACCTCACCCTCCAA-GGGC-----------------------------------------------------------------GTGGAGCATGGGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3141173 16 - 7082604 CAACCTCACCCTTCAG----------------------------------------------------------------------------------- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3370365 33 + 7587287 TGACCTCACCCTCCAA-GGGC-----------------------------------------------------------------GTGGGGCATGGGA i aotNan1.NW_018509326v1 C 0 I 87 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 627626 27 + 5243153 I a score=47064.000000 s hg38.chr2_KI270769v1_alt 94848 11 + 120616 TGGGATGTTTC s panTro5.chr2A 3557378 11 + 111504155 TGGGATGTTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3417679 11 + 114371477 TGGGATGTTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 296345 11 + 637652 TGGGATGTTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092048 5 + 81552678 CGGGA------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3355604 11 + 108979918 cagaatgttcc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5067736 11 - 111193037 CAGAATGTTCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3458932 11 + 3644372 cagaatgttcc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3415608 11 - 10304083 CAGAATGTTCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3516278 11 - 107702431 CAGAATGTTCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1047456 11 + 1565135 CAGAATGTTCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3409654 11 - 13651311 CAGAATGTTCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3497675 11 - 108792865 CAGGGTGTTTC i calJac3.chr14 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3141189 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 627626 27 + 5243153 I e aotNan1.NW_018509326v1 3370398 87 + 7587287 I a score=158835.000000 s hg38.chr2_KI270769v1_alt 94859 68 + 120616 AGAGGACGTG------------------------------------------------------------------------------------------------------------------------GGG-------CATGATGGGACGGGAAGTTTCAGTGGGTGT-GGGGCATGATGGGAC----------------------------------GGGGTGTTCC s panTro5.chr2A 3557389 102 + 111504155 AGAGGACGTG------------------------------------------------------------------------------------------------------------------------GGG-------CATGATGGGACGGGAAGTTTCAGTGGGTGT-GGGGCATGATGGGACAGGGTGTTCCAGAGGGCGTGGGGCATGATGGGACGGGGTGTTCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3417690 103 + 114371477 AGAGGACGTG------------------------------------------------------------------------------------------------------------------------GGG-------CATGATGGGACGGGAAGTTTCAGTGGGTGTGGGGGCATGATGGGACAGGGTGTTCCAGAGGGCGTGGGGCATGATGGGACGGGGTGTTCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 296356 68 + 637652 AGAGGACGTG------------------------------------------------------------------------------------------------------------------------GGG-------CATGATGGGACGGGAAGTTTCAGTGGGTGT-GGGGCATGATGGGAC----------------------------------GGGGTGTTCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092053 6 + 81552678 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3355615 68 + 108979918 agaaggcatg------------------------------------------------------------------------------------------------------------------------ggg-------catgatgggacgggatgttccagagggcat-agggcatgATGGGAC----------------------------------GGGATGTTCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5067747 170 - 111193037 AGAAGGCATGGGGCATGATGGGACGGGATGTTCCAG-----------------AGGGCATAGGGCATGATGGGACGGGATGTTCCGGAGGGCGCAGG-GCATGACAGGACGGGATGTTCTAGAGGGCCTAGGG-------CATGATGGGACGGGATGTTCTAGAGGGCGC-AGGGCATgatgggat----------------------------------gggatgttct i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3458943 68 + 3644372 agaaggcatg------------------------------------------------------------------------------------------------------------------------ggg-------catgatgggacgggatgttccagagggcat-agggcatgATGGGAC----------------------------------GGGATGTTCC i macNem1.NW_012011978v1 C 0 I 102 s cerAty1.NW_012000820v1 3415619 102 - 10304083 AGAAGGCATGGGGCATGATGGGACGGGATGTTCCGG-----------------A----------------------------------------------------------------------------GGGCGCAGGGCATGACAGGACGGGATGTTCCAGAGGGCCT-AGGGCATgatgggat----------------------------------gggatgttct i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3516289 68 - 107702431 AGAAGGCATG------------------------------------------------------------------------------------------------------------------------GGG-------CATGATGGGACGGGATGTTCCAGAGGGCGC-AGGGCATGATGGGAC----------------------------------GGGATGTTCC i chlSab2.chr14 C 0 I 142 s manLeu1.NW_012104432v1 1047467 68 + 1565135 AGAAGGCATG------------------------------------------------------------------------------------------------------------------------GGG-------CATGATGGGACAGGATGTTCCAGAGGGCAT-AGGGCATGATGGGAC----------------------------------GGGATGTTCC i manLeu1.NW_012104432v1 C 0 I 102 s colAng1.NW_012118821v1 3409665 142 - 13651311 AGAAGGCATGGGGCATGACGGGACAGGATGTTCCGGAGGGCCTGGGGCGTGATG-----------------GGATGGGATGTTCCGGAGGGCGTGGGCGTG-----------------------------GGG-------CATGATGGGACGGGATGTTCCGGAAGGCAC-AGGGCATGATGGGAC----------------------------------GGGATGTTCT i colAng1.NW_012118821v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3141189 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 627626 27 + 5243153 I e aotNan1.NW_018509326v1 3370398 87 + 7587287 I e calJac3.chr14 3497686 0 - 108792865 C a score=41526.000000 s hg38.chr2_KI270769v1_alt 94927 6 + 120616 GGAGGG s panTro5.chr2A 3557491 6 + 111504155 GGAGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3417793 6 + 114371477 GGAGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 296424 6 + 637652 GGAGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092059 6 + 81552678 GGAGGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3355683 6 + 108979918 GGAGGG i rheMac8.chr13 C 0 I 102 s macFas5.chr13 5067917 6 - 111193037 ggaggg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3459113 6 + 3644372 ggaggg i macNem1.NW_012011978v1 I 102 C 0 s cerAty1.NW_012000820v1 3415721 6 - 10304083 ggaggg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3516499 6 - 107702431 GGAGGG i chlSab2.chr14 I 142 C 0 s manLeu1.NW_012104432v1 1047637 6 + 1565135 ggaggg i manLeu1.NW_012104432v1 I 102 C 0 s colAng1.NW_012118821v1 3409807 6 - 13651311 GGAGGG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3141189 3 - 7082604 ---GGG i saiBol1.JH378218 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 627626 27 + 5243153 I e aotNan1.NW_018509326v1 3370398 87 + 7587287 I e calJac3.chr14 3497686 0 - 108792865 C a score=77659.000000 s hg38.chr2_KI270769v1_alt 94933 11 + 120616 CGTGGGGCATG s panTro5.chr2A 3557497 11 + 111504155 CGTGGGGCATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3417799 11 + 114371477 CGTGGGGCATG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 296430 11 + 637652 CGTGGGGCATG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092065 11 + 81552678 CATGAGGCATG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3355791 11 + 108979918 cgtggggcatg i rheMac8.chr13 I 102 C 0 s macFas5.chr13 5067923 11 - 111193037 cgtggggcatg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3459119 11 + 3644372 cgtggggcatg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3415727 11 - 10304083 cgtggggcatg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3516505 11 - 107702431 CGTGGGGCATG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1047643 11 + 1565135 cgtggggcatg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3409813 11 - 13651311 CGTGGGGCATG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3141192 11 - 7082604 CATGGGGTATG i saiBol1.JH378218 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e cebCap1.NW_016107454v1 627626 27 + 5243153 I e aotNan1.NW_018509326v1 3370398 87 + 7587287 I e calJac3.chr14 3497686 0 - 108792865 C a score=124902.000000 s hg38.chr2_KI270769v1_alt 94944 17 + 120616 ATGGGACGGGATGTTTA s panTro5.chr2A 3557508 17 + 111504155 ATGGGACGGGATGTTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3417810 17 + 114371477 ATGGGACGGGATGTTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 296441 17 + 637652 ATGGGACGGGATGTTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092076 17 + 81552678 ATGGGACGGGATGTTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3355802 17 + 108979918 atgggatgggatgTTTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5067934 17 - 111193037 atgggatgggatgTTTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3459130 17 + 3644372 atgggatgggatgTTTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3415738 17 - 10304083 atgggatgggatgTTTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3516516 17 - 107702431 ATGGGATGGGATGTTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1047654 17 + 1565135 atgggatgggatgTTTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3409824 17 - 13651311 ATGGGATGGGATGTTTA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3141203 14 - 7082604 ---GGACAGGGTGTTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 627653 17 + 5243153 ATGGGACAGGGTGTTTC i cebCap1.NW_016107454v1 I 27 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e aotNan1.NW_018509326v1 3370398 87 + 7587287 I e calJac3.chr14 3497686 0 - 108792865 C a score=548940.000000 s hg38.chr2_KI270769v1_alt 94961 65 + 120616 CTCTGCTCC------------ATGGCCTTACAGTGTTAAGTGTAAGTCAGCATTGAAAGCAGTTTTCCCTGGAACAT s panTro5.chr2A 3557525 65 + 111504155 CTCTGCTCC------------ATGGCCTTACAGTGTTAAGTATAAGTCAGCATTGAAAGCAGTTTTCCCTGGAACAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3417827 65 + 114371477 CTCTGCTCC------------ATGGCCTTACAGTGTTAAGTATAAGTCAGCATTGAAAGCAGTTTTCCCTGGAACAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 296458 65 + 637652 CTCTGCTCC------------ATGGCCTTACAGTGTTAAGTATAAGTCAGCATTGAAAGCAGTTTTCCCTGGAACAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092093 77 + 81552678 CTCTGCTCCATGGCCTTGCAGATGGCCTTGCAGTGTTGAGTATAAGTCAGCATTGAAAGCAGTTTTCCCGGGAACAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3355819 69 + 108979918 CTCTGCTCCATGG--------ATGGCCTTGCAGTGTTGAGTATAAGTCAGCACTGAAAGCAGTTTTCCCTGGAACAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5067951 69 - 111193037 CTCTCCTCCATGG--------ATGGCCTTGCAGTGTTGAGTATAAGTCAGCACTGAAAGCAGTTTTCCCTGGAACAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3459147 69 + 3644372 CTCTGCTCCATGG--------ATGGCCTTGCAGTGTTGAGTATAAGTCAGCACTGAAAGCAGTTTTCCCTGGAACAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3415755 69 - 10304083 CTCTGCTCCATGG--------ATGGCCTTGCAGTGTTGAGTATAAGTCAGCACTGAAAGCAGTTTTCCCTGGAACAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3516533 69 - 107702431 CTCTGCTCCATGG--------ATGGCCTTGCAGTGTTGAGTATAAGTCAGCACTGAAAGCAGTTTTCCCTGGAACAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1047671 69 + 1565135 CTCTGCTCCATGG--------ATGGCCTTGCAGTGTTGAGTATAAGTCAGCACTGAAAGCAGTTTTCCCTGGAACAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3409841 69 - 13651311 CTCTGCTCCATGG--------ATGGCCTTGCAGTGTTGAGTATAAGTCAGCATTGAAAGCAGTTTTCCCGGGAACAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3497686 63 - 108792865 CCCTGCTCC------------ATGGCCTTGAAGTGTTGAGGGTAAGTCAGCATTTAAAGCAGTTTTCCCTGGAAC-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3141217 63 - 7082604 CCCTGCTCC------------ATGGCCTTGAAGTGTTGAGTGTCAGTCAGGATTAAAAGCAGTTTTCCCTGGAAC-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 627670 65 + 5243153 CCCTGCTCC------------ATGGCCTTGAAGTGTTGAGTGTAAGTCAGCATTAAAAGCAGTTTTCCCTGGAACAT i cebCap1.NW_016107454v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2576674 778 + 5252280 I e aotNan1.NW_018509326v1 3370398 87 + 7587287 I a score=304215.000000 s hg38.chr2_KI270769v1_alt 95026 36 + 120616 AGAATTCTAGTTGATGCGGATCCAGAACCACGGAGG s panTro5.chr2A 3557590 36 + 111504155 AGAATTCTAGTTGATGCGGATCCAGAACCACGGAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3417892 36 + 114371477 AGAATTCTAGTTGATGCGGATCCAGAACCACGGAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 296523 36 + 637652 AGAATTCTAGTTGATGCGGATCCAGAACCACGGAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092170 36 + 81552678 TGAATTCTAGTTGATGTGGATCCAGAACCACGGAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3355888 36 + 108979918 AGAATTCTAGTTGATGTGGATCCGGAACCACAGAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5068020 36 - 111193037 AGAATTCTAGTTGATGTGGATCCGGAACCACAGAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3459216 36 + 3644372 AGAATTCTAGTTGATGTGGATCCGGAACCACAGAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3415824 36 - 10304083 AGAATTCTAGTTGATGTGGATCCGGAACCACAGAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3516602 36 - 107702431 AGAATTCTAGTTGATGTGGATCCAGAACCACAGAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1047740 36 + 1565135 AGAATTCTAGTTGATGTGGATCCGGAACCACAGAGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3409910 36 - 13651311 AGAATTCTAGTTGATGTGGATCCGGAAGCACAGAGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3497749 36 - 108792865 ACAGTTCTGGCTGGTGCAGATCCAGAACCACGGAGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3141280 36 - 7082604 AGAGTTCTGGCCGGTGCAGATCCAGAACCACGGAGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 627735 36 + 5243153 AGAGTTCTGGCTGGTGTGGATCCAGAACCATGGAGG i cebCap1.NW_016107454v1 C 0 I 9 s otoGar3.GL873658 2577452 34 + 5252280 AGCACTCCAGGGCACACGGGCTGAGAGCCAGCGG-- i otoGar3.GL873658 I 778 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e aotNan1.NW_018509326v1 3370398 87 + 7587287 I a score=205398.000000 s hg38.chr2_KI270769v1_alt 95062 30 + 120616 GTCCTACAACTGCTAGGCTGAAGGCTGACT s panTro5.chr2A 3557626 30 + 111504155 GTCCTACAACTGCTAGGCTGAGGGCTGACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3417928 30 + 114371477 GTCCTACAACTGCTAGGCTGAGGGCTGACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 296559 30 + 637652 GTCCTACAACTGCTAGGCTGAGGGCTGACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092206 29 + 81552678 GTCCTACAACTGCTATGCTG-GGGCTGACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3355924 30 + 108979918 CTCCCACAACTGCTGTACTGAGGGCTGACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5068056 30 - 111193037 CTCCCACAACTGCTGTACTGAGGGCTGACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3459252 30 + 3644372 CTCCCACAACTGCTGTACTGAGGGCTGACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3415860 30 - 10304083 CTCCCACAACTGCTGTACTGAGGGCTGACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3516638 30 - 107702431 CTCCCACAACTGCTGTACTGAGGGCTGACT i chlSab2.chr14 C 0 I 196 s manLeu1.NW_012104432v1 1047776 30 + 1565135 CTCCCACAACTGCTGTACTGAGGGCTGACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3409946 30 - 13651311 CTCCCACAACTGCTGTACTGAGGGCTGACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3497785 30 - 108792865 CTCCCACAGCTGCTATGCCGAGGGCCAACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3141316 25 - 7082604 CCCCCACAGCTGCTCTGCCGAGGGC----- i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2577486 28 + 5252280 --CTCCCGACTGCTGTGCCCAGCACTGACC i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e cebCap1.NW_016107454v1 627771 9 + 5243153 I e aotNan1.NW_018509326v1 3370398 87 + 7587287 I a score=137477.000000 s hg38.chr2_KI270769v1_alt 95092 28 + 120616 TACCAAAGGCCACAGAGCATCTCTCC------------CC- s panTro5.chr2A 3557656 28 + 111504155 TACCGAAGGCCACAGAGCATCTCTCC------------CC- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3417958 28 + 114371477 TACCGAAGGCCACAGAGCATCTCTCC------------CC- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 296589 28 + 637652 TACCGAAGGCCACAGAGCATCTCTCC------------CC- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092235 28 + 81552678 TACCGAAGACCACGGAGCGTCTCTCC------------CC- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3355954 28 + 108979918 TCCCGAACACCACAGAGCGTCTCTCC------------CC- i rheMac8.chr13 C 0 I 120 s macFas5.chr13 5068086 28 - 111193037 TCCCGAACACCACAGAGCGTCTCTCC------------CC- i macFas5.chr13 C 0 I 99 s macNem1.NW_012011978v1 3459282 28 + 3644372 TCCCGAAGACCACGGAGCGTCTCCCC------------CC- i macNem1.NW_012011978v1 C 0 I 202 s cerAty1.NW_012000820v1 3415890 28 - 10304083 TACCGAAGACCACAGAGCGTCTCTCC------------CC- i cerAty1.NW_012000820v1 C 0 I 2 s manLeu1.NW_012104432v1 1047806 28 + 1565135 TACTGAAGACCACAGAGCGTCTCTCC------------CC- i manLeu1.NW_012104432v1 C 0 I 66 s colAng1.NW_012118821v1 3409976 28 - 13651311 TCCCGAAGACCACAGAGCATCTCTCC------------CC- i colAng1.NW_012118821v1 C 0 I 171 s calJac3.chr14 3497815 28 - 108792865 TCTCCAAGACCACGAAGCGTCTCTCC------------TC- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3141341 28 - 7082604 ------------CGGAGCGTCTCCCCGCAGCAGGTCAGTC- i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2577514 29 + 5252280 CATCTGTGCCGTCAGAGCCACTGGTC------------CTC i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e cebCap1.NW_016107454v1 627771 9 + 5243153 I e aotNan1.NW_018509326v1 3370398 87 + 7587287 I e chlSab2.chr14 3516668 196 - 107702431 I a score=172.000000 s hg38.chr2_KI270769v1_alt 95120 7 + 120616 ----------------------CAG--------------CAGG s panTro5.chr2A 3557684 7 + 111504155 ----------------------CAG--------------CAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3417986 7 + 114371477 ----------------------CAG--------------CAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 296617 7 + 637652 ----------------------CAG--------------CAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092263 21 + 81552678 ----------------------CAGCAGGTTGAACCCCACAGG i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5068213 7 - 111193037 ----------------------CTG--------------CAGG i macFas5.chr13 I 99 I 14 s cerAty1.NW_012000820v1 3415920 4 - 10304083 ---------------------------------------CAGG i cerAty1.NW_012000820v1 I 2 I 14 s manLeu1.NW_012104432v1 1047900 7 + 1565135 ----------------------CAG--------------CCAG i manLeu1.NW_012104432v1 I 66 I 1 s calJac3.chr14 3497843 7 - 108792865 ----------------------CAG--------------CAGC i calJac3.chr14 C 0 I 9 s saiBol1.JH378218 3141369 7 - 7082604 ----------------------CCA--------------CAGC i saiBol1.JH378218 C 0 I 9 s otoGar3.GL873658 2577543 29 + 5252280 CATGGGTGTAATTCTGTGCGTGCCG--------------TAGA i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e cebCap1.NW_016107454v1 627771 9 + 5243153 I e aotNan1.NW_018509326v1 3370398 87 + 7587287 I e colAng1.NW_012118821v1 3410004 171 - 13651311 I e chlSab2.chr14 3516668 196 - 107702431 I e macNem1.NW_012011978v1 3459310 202 + 3644372 I e rheMac8.chr13 3355982 120 + 108979918 I a score=2502463.000000 s hg38.chr2_KI270769v1_alt 95127 336 + 120616 TTCCTGTGGCACTTGCATGTGTGTCTTTTTCTTTTTCCCCCAAATAATTTTCCAGTTTTATTCTTTTCCTTTGACATAGAAGAACACAATTACCGAGAGAA-GAAAAGGAAGGCGAGGGTGACTGCGCGCCT-CCCCATCCCCACCCCCATTCCCAC---------------ACGGCTCATTTCAACTCTGGGAG-----GGtttacaggtaagaatgtgaaaatcagaaacgtcaggtaacttttccaaggacccacagtttaaagcgggagagagggagggattccaatccaaatctAACAGTGAGGCTCATGGTGGTGCC-AC-GATCTGTGTTGCCGTTTCACACACTGCATATTG s panTro5.chr2A 3557691 337 + 111504155 TTCCTGTGGCACTTGCATGTGTGTCTTTTTCTTTTTCCCCCAAATAATTTTCCAGTTTTATTCTTTTCCTTTGACATAGAAGAACACAATTACCGAGAGAAAGAAAAGGAAGGCGAGGGTGACTGCGCGCCT-CCCCATCCCCACCCCCATTCCCAC---------------ACGGCTCATTTCAACTCTGGGAG-----GGtttacaggtaagaatgtgaaaatcagaaatgtcaggtaactttcccaaggacccacagtttaaagcgggagagagggagggattccaatccaaatctAACAGTGAGGCTCATGGTGGTGCC-AC-GATCTGTGTTGCCGTTTCACACACTGCATATTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3417993 337 + 114371477 TTCCTGTGGCACTTGCATGTGTGTCTTTTTCTTTTTCCCCCAAATAATTTTCCAGTTTTATTCTTTTCCTTTGACATAGAAGAACACAATTACCGAGAGAAAGAAAAGGAAGGCGAGGGTGACTGCGCGCCT-CCCCATCCCCACCCCCATTCCCAC---------------ACGGCTCATTTCAACTCTGGGAG-----GGtttacaggtaagaatgtgaaaatcagaaatgtcaggtaactttcccaaggacccacagtttaaagcgggagagagggagggattccaatccaaatctAACAGTGAGGCTCATGGTGGTGCC-AC-GATCTGTGTTGCCGTTTCACACACTGCATATTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 296624 335 + 637652 TTCCTGTGGCACTTGCATGTGTGTCTTTTTC-TTTTCCCCCAAATAATTTTCCAGTTTTATTCTTTTCCTTTGACATAGAAGAACACAATTACCGAGAGAAAGAAAAGGAAGGCGAGGGTGACTGCGTGCCT-CCCCATCCCCA-CCCCATTCCCAC---------------ACGGCTCATTCCAACTCTGGGAG-----GGtttacaggtaagaatgtgaaaaccagaaacgtcaggtaacttttccaaggacccacagtttaaagcgggagagagggagggatttcaatccaaatctAACAGTGAGGCTCATGGTGGTGCC-AC-GATCTGTGTTGCCATTTCACACACTGCATATTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092284 336 + 81552678 TTCCTGTGGCACTTGCATGTGTGTCTTCT---TTTTCCCCCAAATAATTTTCCAGTTTTATTATTTTCCTTTGACATAGAAGAACACAATTACCGAGAGAGAAAAAAGGAAGGCGAGGGTGACTGCGTGCCTCCCCCATCCCCAACCCCATTCCCAC---------------ATGGCTCATTTGAGCTCTGGGAG-----GGtttacaggtaagaatgtgaaaatcagaaatgtcaggtaacttttccaaggacccacagtttaaagtgggagagagggagggattccaatccaaatctAATGGTGAGGCTCATGGTGGTACCGAG-GATCTGTGTTGCCATTTCACATGCTGCATATTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3356102 352 + 108979918 TTCCTGTGGCACTTGCATGTGTGTCTTTTTCTTTTTCCCCCAAATAATTTTCGGGTTTTATTCTTTTCCTTTGACATAGAAGAACACAATTACCAAGAAAAGGAAAAGGAA-GCGAGGGTGACTGCGCGCCTCCCCCATCCCCACCCCCGTTGCCACACGGTGTTTCACTT-ACGGCTCATTTCAACTCCGGGAG-----GGtttacaggtaagaatgtgaacatgagaaaggtcaggtaacttttccaaggactcacagtttaaagtgggagggagggagggattccattccaaatctaacactgaggctcatagtggtgcc-acggatctgtgttgcctttTCACACACTGCATATTG i rheMac8.chr13 I 120 C 0 s macFas5.chr13 5068234 353 - 111193037 TTCCTGTGGTACTTGCATGTGTGTCTTTTTCTTTTTCCCCCAAATAATTTTCGTGTTTTATTCTTTTCCTTTGACATAGAAGAACACAATTACCAAGAAAAGGAAAAGGAAGGCGAGGGTGACTGCGCGCCTCCCCCATCCCCACCCCCATTGCCACACAGTGTTTCACTT-ACGGCTCATTTCAACTCCGGGAG-----GGtttacaggtaagaatgtgaacatgagaaaggtcaggtaacttttccaaggactcacagtttaaagtgggagggagggagggattccattccaaatctaacactgaggctcatggtggtgcc-acggatctgtgttgcctttTCACACACTGCTTATTG i macFas5.chr13 I 14 C 0 s macNem1.NW_012011978v1 3459512 352 + 3644372 TTCCTGTGGCACTTGCATGTGTGTCTTTTTCTTTTTCCCCCAAATAATTTTCGGGTTTTATTCTTTTCCTTTGACATAGAAGAACACAATTACCAAGAAAAGGAAAAGGAA-GCGAGGGTGACTGCGCGCCTCCCCCATCCCCACCCCCATTGCCACACGGTGTTTCACTT-ACGGCTCATTTCAACTCCGGGAG-----GGtttacaggtaagaatgtgaacctgagaaaggtcaggtaacttttccaaggactcacagtttaaagtgggagggagggagggattccattccaaatctaacactgaggctcatggtggtgcc-acggatctgtgttgcctttTCACACACTGCATATTG i macNem1.NW_012011978v1 I 202 C 0 s cerAty1.NW_012000820v1 3415938 353 - 10304083 TTCCTGTGGCACTTGCATGTGTGTCTTTTTCTTTTTCCCCCACATAATTTTTGGGTTTTATTCTATTCCTTTGACATAGAAGAACACAATTACCAAGAAAAGGAAAAGGAAGGTGAGGGTGACTGCGCGCCTCCCCCATCCCCACCCCCATTGCCACACGGTGTTTCACTT-ACGGCTCATTTCAACTCCGGGAG-----GGtttacaggtaagaatgtgaacatgagaaaggtcaggtaacttttccaaggactcacagtttaaagtgggagggagggagggattccattccaaatctaacactgaggctcatggtggtgcc-acggatctgtgttgcctttTCACACACTGCATATTG i cerAty1.NW_012000820v1 I 14 C 0 s chlSab2.chr14 3516864 354 - 107702431 TTCCTGTGGCACTTGCATGTGTGTCTTTTTCTTTTTCCCCCAAATAATTTTCGGGTTTTATTCTTTTCCTTTGACATAGAAGAACACAATTACCAAGAAAAAGAAAAGGAAGGCGAGGGTGACTGCGCGCCTCCCCCATCTCCACCCCCATTGCCACACGGTGTTTCACTTAACGGCTCATTTCAACTCCGGGAG-----GGtttacaggtgagaatgtgaacatgagaaaggtcaggtaacttttccaaggactcacagtttaaagtgggagggagggagggattccattccaaatctaacacggaggctcatggtggtgcc-acggatctgtgttgcctttTCACACACTGCATATTG i chlSab2.chr14 I 196 C 0 s manLeu1.NW_012104432v1 1047908 353 + 1565135 TTCCTGTGGCACTTGCATGTGTGTCTTTTTCTTTTTCCCCCACATAATTTTTGGGTTTTATTCTATTCCTTTGACATAGAAGAACACAATTACCAAGAAAAGGAAAAGGAAGGCGAGGGTGACTGCGCGCCTCCCCCATCCCCACCCCCATTGCCACACGGTGTTTCACTT-ACGGCTCATTTCAACTCCGGGAG-----GGtttacaggtaagaatgtgaacatgagaaaggtcaggtaacttttccaaggactcacagtttaaagtgggagggagggagggattccattccaaatctaacactgaggctcatggtggtgcc-acggatctgtgttgcctttTCACACGCTGCATATTG i manLeu1.NW_012104432v1 I 1 C 0 s colAng1.NW_012118821v1 3410175 353 - 13651311 TTCCTGTAGCACTTGCATGTGAGTCTTTTTCTTTTTCCCCCAAATAATTTTCGGGTTTTATTCTTCTCCTTTGACATAGAAGAACACAATTACCAAGAAAAAGAAAAGGAAGGCGAGGGTGACTGCGCGCCTCCCCCATCCCCACCCCCATTCCCACACGGTGTTTCACTT-ATGGCTCATTTCAATTCTGGGAG-----GGtttacaggtaagaatgtgaaaatgagaaacgtcaggtaacttttccaaggactcacagtttaaagtgggagagagggagggattccattccaaatctaacactgaggctcctggtggtgcc-acggatctgtgttgcctttTCACACACGGCATATTG i colAng1.NW_012118821v1 I 171 C 0 s calJac3.chr14 3497859 345 - 108792865 TTTATGTGGCACTTGCATGAGTCTTTTTTT-----CCCCCCAAATAATTTTCAGGTTTTATTATTTTCCTTTGACACAGAAGAACACAAGTGCCAAGAGAAAGAAAAGGAAGGCGAGGGTGACAG-GTGCCTCCTCCATTCCCACCCC--TTCCCACATGGCGTTTCACTT-AAGGCTCATTCCAACTCCAGGAG-----GGtttacgggaaagaaggtggaaatcagaaacgttgggtaacttttccaaggactcacagtttaacgtgagagagagggagggattccaatccaaatctaacactgaagctcacggcggtgcc-acggatctgtgctacctttTCACATACCATGTGCTG i calJac3.chr14 I 9 C 0 s saiBol1.JH378218 3141385 343 - 7082604 TTTGTGTGGCACTTGCATGTGTCTTTTTTT---TCTCCCCCAAATAATTTTCGGGTTTTATTCTTTCCCTTTGACATAGAAGAACACCAGTGCCAAGAGAAAGAAAAGGAAGGCGAGGGTGACAG-GAGCCTCTTCCATTCCCACCTC--TTCCCACGCGGCCTTTCACTT-AAGGCTCATTTCAACTCCAGGCG-----GGtttacaggaaagaatgtggagatcagaaatgttgtgtaac--ttccaaagactcacagtttaacgt--gagagagggagggattccaatccaaatctaacgctgaagcccacagcggtgcc-acggatctgtgctgcctttTCACATACCGTGTGCTG i saiBol1.JH378218 I 9 C 0 s otoGar3.GL873658 2577572 310 + 5252280 TCTGTGTGGCCCTGCAATGGATGTCTTTTCCTTTATCGCCAAAATAG-----GGGTTAAATTATTTCCTTTTGACATCCAAGAACACAAATA----------GAAAAGGCATTTATTGGTCATT--------------------------Tctccacatggcatttcatgg-aatgctaacagcagttctgggaagtggtgtttcacaggttagagtgtgaaagttagaaatgccaggtgac--tccccaggcctcatggttgaaag---gtggcagaggcaggttccaa-ccactggtaatgtcccagctcacaagtgtccc-actgagtggtgctgcc-tttcacatgctgcacactg i otoGar3.GL873658 C 0 I 1566 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e cebCap1.NW_016107454v1 627771 9 + 5243153 I e aotNan1.NW_018509326v1 3370398 87 + 7587287 I a score=2031376.000000 s hg38.chr2_KI270769v1_alt 95463 311 + 120616 CTTTGCAGTGGAGAGCTGAATCCACAGGCAGGGCCGGACCCACCAATGGGCTGCCGTGGATAGGCTTTGGGCTCCAGcaccacacacatggccacacgcttacacatacaacacacacatgcactcacacacGGAGGACCGTGTTCACCTGCGTCTAGGTCCTTTCCACCTCGAGGTTTACCTTTATTGGACCTGGAACCCGATTACGGGCAGTCTGTTCCCGCGTCGCCCACCCTCGTCCGTGGGAGAAGTGCCATCTCCGGGACCGTGTTAGGCGT-------CCAGCACAGCCAGCCAGGCTCTCCAGCCTCACT s panTro5.chr2A 3558028 311 + 111504155 CTTTGCAGTGGAGAGCTGAATCCACAGGCAGGGCCGGACCCACCAATGGGCTGCCGTGGACAGGCTTTGGGCTCCAGcaccacacacatggccacacgcttacacatacaacacacacatgcactcacacacGGAGGACCGTGTTCACCTGCGTCTAGGTCCTTTCCGCCTCGAGGTTTACCTTTATTGGACCTGGAACCCGATTACGGGCAGTCTGTTCCCGCGTCGCCCACCCTCGTCCGTGCGAGAAGTGCCATCTCCGGGACCGTGTTAGGCGT-------CCGGCACAGCCAGCCAGGCTCTCCAGCCTCACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3418330 311 + 114371477 CTTTGCAGTGGAGAGCTGAATCCACAGGCAGGGCCGGACCCACCAATGGGCTGCCGTGGACAGGCTTTGGGCTCCAGcaccacacacatggccacacgcttacacatacaacacacacatgcactcacacacGGAGGACCGTGTTCACCTGCGTCTAGGTCCTTTCCGCCTCGAGGTTTACCTTTATTGGACCTGGAACCCGATTACGGGCAGTCTGTTCCCGCGTCGCCCACCCTCGTCCGTGCGAGAAGTGCCATCTCCGGGACCGTGTTAGGCGT-------CCGGCACAGCCAGCCAGGCTCTCCAGCCTCACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 296959 311 + 637652 CTTTGCAGTGGAGAGCTGAATCCACAGGCAGGGCCGGACCCACCAATGGGCTGCCGTGGACAGGCTTTGGGCTCCAGcaccacacacatggccacacgcttacacatacaacacacacatgcactcacacacGGAGGACCGTGTTCACCTGCGTCTAGGTCCTTTCCGCCTCGAGGTTTACCTTTATTGGACCTGGAACCCAATTACGGGCAGTCTGTTCCCGCGTCGCCCACCCTCGTCCGTGGGAGAAGTGCCATCTCCGGGACCGTGTTAGGCGT-------CCAGCACAGCCAGCCAGGCTCTCCAGCCTCACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092620 318 + 81552678 CTTTGCAGTAGAGCGCTGAATCCACAGGCAGGGCCGGACCCACCAGTGGGCTGCCGTGGACAGGCTCTGGGCTCGTGcaccacacacatggccacacgcttacacatacaacacccacatgcactcacacacaGAGGACCGTGCTCACCTGCATCTAGGTCCTTTACGCCTCGAGGTTTACCTTTATTGGACCTGGAACCCGATTATGGGCAGTCTGTTCCCGCGTTGCTCACCCTCGTCCGTGGAAGAAGTGCCATCTCCGAGACCATGTTAGGCGTCATCCCGCCAGCACAGCCAGCCAGGCTCTCCAGCCTCACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3356454 294 + 108979918 CTTTGCAGTGGAAAGCTGAATCTGCAGGCAGGGCCAGACCCACCAATGGGCTGCCATGGACGGGCTCTG--------------------GGCcacacgcttacacatacaacatacacatgcactcacacGTGGAGGACTGCGCTCACCTGCAGCTAGGTCCTTTCCGCCTCGAGGTTCACCTTTATTGGGCCTGGAACCTGATTA----CAGTCTGTTCCCGCGTTACCTCCCCTTGTCCGTGGGAGAAGCGCCATCTCCGGGACCGTGTTAGGCGTTATCCTGCCAGCGCAGCCAGCCAGGCTCTCCAGCCTCACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5068587 294 - 111193037 CTTTGCAGTGGAAAGCTGAATCTGCAGGCAGGGCCGGACCCACCAATGGGCTGCCATGGACGGGCTCTG--------------------GGCcacacgcttacacatacaacatacacatgcactcacacGTGGAGGACTGCGCTCACCTGCAGCTAGGTCCTTTCCGCCTCGAGGTTCACCTTTATTGGACCTGGAACCTGATTA----CAGTCTGTTCCCGCGTTACCTCCCCTTGTCCGTGGGAGAAGCGCCATCTCCGGGACCGTGTTAGGCGTTATCCTGCCAGCGCAGCCAGCCAGGCTCTCCAGCCTCACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3459864 294 + 3644372 CTTTGCAGTGGAAAGCTGAATCTGCAGGCAGGGCCGGACCCACCAATGGGCTGCCATGGACGGGCTCTG--------------------GGCcacacgcttacacatacaacatacacatgcactcacacatGGAGGACTGCGCTCACCTGCAGCTAGGTCCTTTCCGCCTCGAGGTTTACCTTTATTGGACCTGGAACCTGATTA----CAGTCTGTTCCCGCGTTACCTCCCCTTGTCCGTGGGAGAAGCGCCATCTCCGGGACCGTGTTAGGCGTTATCCTGCCAGCGCAGCCAGCCAGGCTCTCCAGCCTCACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3416291 294 - 10304083 CTTTGCAGTGGAGAGCTGAATCTGCAGGCAGGGCCGGACCCACCAATGGGCTGCCATGGACGGGCTCTG--------------------GGCcacacgcttacacatacaacacacacatgcactcacacacGGAGGACTGCGCTCACCTGCAGCTAGGTCCTTTCCGCCTCGAGGTTTACCTTTATTGGACCTGGAACCTGATTA----CAGTCTGTTCCCGCGTTACCCACCCTTGTCCGTGGGAGAAGCGCCATCTCCGGGACTGTGTTAGGCGTTATCCTGCCAGCGCAGCCAGCCAGGCTCTCCAGCCTCACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3517218 294 - 107702431 CTTTGCACTGGCGAGCTGAATCTGGAGGCAAGGCCAGACCCACCAATGGGCTGCCATGGACGGGCTCTG--------------------GGCcacacgcttacacatacaacacacacatgcactcacacaTGGAGGACTGCGCTCACCTGCAGCTAGGTCCTTTCCGCCTCGAGGTTTACCTTTATTGGACCTGGGACCTGATTA----CAGTCTGTTCCCGCGTTACCCACCCTTGTCCGTGGGAGAAGCGCCATCTCCAGGACCGTGTTAGGCGTTATCCTGCCAGCGCAGCCAGCCAGGCTCTCCAGCCTCACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1048261 294 + 1565135 CTTTGCAGTGGAGAGCTGAATCTGCAGGCAGGGCCGGACCCACCAATGGGCTGCCATGGACGGGCTCTG--------------------GGCcacacgcttacacatacaacacacacatgcactcacacaTGGAGGACTGCACTCACCTGCAGCTAGGTCCTTTCCGCCTCGAGGTTTACCTTTATTGGACCTGGAACCTGATTA----CAGTCTGTTCCCGCGTTACCCACCCTTGTCCGTGGGAGAAGCGCCATCTCCGGGACCGTGTTAGGCGTTATCCTGCCAGCGCAGCCAGCCAGGCTCTCCAGCCTCACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3410528 294 - 13651311 CTTTGCAGTGGAGAGCTGAATCTGCAGGCAGGGCCGGACCCACCAATGGGCTGCCGTGGACGGGCTCTG--------------------GGCcacacgcttacacatacaacacacacatgcactcacacaTGGAGGACTGTGCTCACCTGCTGCTAGGTCCTTTCCACCTCGAGGTTTACCTTTATTGGACCTGGAACCTGATTA----CAGTCTGTTCCCCCGTTACCCACCCTTGTCCGTGGGAGAAGCGCCATCTCCAGGACCGCGTTAGGCGTCATCCTGCCAGCGCAGCCAGCCAGGCTCTCCAGCCTCACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3498204 308 - 108792865 CTTGGCAGTGGGGAGCTGAGAAAGCAGGCCGGGCCGGACCCG--GACGGGCTGCCTCGGGGGTGCTCTGGGC-ACAGCACAGCACACATGGGCACACACTTACACATGCA-----CACATGTGCTCA-ACATGGAGGACTGCACTCACCCCCGCCTAGTTCCTTTCCGCCTTGAGGTTTACCTTGATTGGACCTGGAACCTGATCACAGGCAGTCTGTTCCCGCGTCACCCACCCTTGTCTGTGGGAGGAG-GCCATCTCTGGGCCCACATGAGGCATCATCCCACCAGCGCAGCCAGCCAGGCTCTCCAGCCTCACT i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3141728 295 - 7082604 CTTGGCACTGGGGAGCTGAGATTGCAGGCT-GGCTGGACCCGCCGATGGGCTGCCTCGGCCGTGCTCTGGGCTCCAGTGCAGCACCCATGGGCACACGCTTACACATGCG-----CTCACACGT-----------GGACTGCGCTCACCTGTGCC-AATTCCTTTCCGCCTCGAGGTTTTCCTTTATTGGACCTGGACCCCAATTACAGGCAGCCTGTTCCCGCATCGCCCACCCTTGTCTGTG---GGAG-GCCATCTCTGGGCCCAC-TGAGGCATCATCCTGCCAGCGCAGCCAGCCAGGCGCCCCAGCCTCACT i saiBol1.JH378218 C 0 I 1 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 627771 9 + 5243153 I e aotNan1.NW_018509326v1 3370398 87 + 7587287 I a score=678921.000000 s hg38.chr2_KI270769v1_alt 95774 82 + 120616 CCCTCCACCCCAGGGCCCCGAGGCTCTGCCCAC---------------CGAGATGACACCCTGCGACCTCCACCCTGGCTCCTTCTGGTCACCCTGA s panTro5.chr2A 3558339 82 + 111504155 CCCTCCACCCCAGGGCCCCGAGGCTCTGCCCAC---------------CAAGATGACACCCTGCGACCTCCACCCTGGCTCCTTCTGGTCACCCTGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3418641 82 + 114371477 CCCTCCACCCCAGGGCCCCGAGGCTCTGCCCAC---------------CGAGATGACACCCTGCGACCTCCACCCTGGCTCCTTCTGGTCACCCTGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297270 82 + 637652 CCCTCCACCCCAGGGCCCCGAGGCTCTGCCCAC---------------CGAGATGACACCCTGCGACCTCCACCCTGGCTCCTTCTGGTCACCCTGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3092938 97 + 81552678 CCCTCGACCCCAGGGCCCCGAGACTCTGCCCACTGTGACCTCCCTCATCGAGATGACCCCCCGTGACCTCCACCCTGGCTCATTCTGACCGCCCTGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3356748 82 + 108979918 CTCTCCACCCCAGGGCCCCGAGGCTCTGCCCAC---------------CGAGATGATCCCCCACGACCTCCACCCTGGCTGCTTCTGGCCGCCCTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5068881 82 - 111193037 CCCTCCACCCCAGGGCCCCGAGGCTCTGCCCAC---------------CGAGATGATCCCCCACGACCTCCACCCTGGCTGCTTCTGGCCGCCCTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460158 82 + 3644372 CCCTCCACCCCAGGGCCCCGAGGCTCTGCCCAC---------------CGAGATGATCCCCCACGACCTCCACCCTGGCTGCTTCTGGCCGCCCTGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3416585 82 - 10304083 CCCTCCACCCCAGGGCCCCGAGGCTCTGCCCAC---------------CGAGATGATCCCCCACGACCTCCACCCTGGCTGCTTCTGGCCGCCCTGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3517512 82 - 107702431 CCCTCCACCCCAGGGCCCCGAGGCTCTGCCCAC---------------CGAGATGATCCCCCACGACCTCCACCCTGGCTGCTTCTGGCCGCCCTGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1048555 82 + 1565135 CCCTCCACCCCAGGGCCCCGAGGCTCTGCCCAC---------------CGAGATGATCCCCCACGACCTCCACCCTGGCTGCTTCTGGCCGCCCTGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3410822 82 - 13651311 CCCTCCACCCCAGGGCCCCGAGGCTCTGCCCAC---------------CGGGATGATCCCCCACGACCTCCACCCTGGCTGCTTCTGGCCGCCCTGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3498513 82 - 108792865 CCCTCGACCCCAGGGCCCTGAGGCTCTGCCCAC---------------CGAGATGACCCCCCATGACCTCCATCCCAGCTCCTCCTGGCTGCCCTAC i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3142024 81 - 7082604 CCCTCGACCCCAGGGCCCTAAGGCACTGCCCAC---------------CGAGACGATCCCCT-TGACCTCCATCCCAGCTCCTCCTGGCAGCCCTAC i saiBol1.JH378218 I 1 C 0 s cebCap1.NW_016107454v1 627780 81 + 5243153 CCCTCGACCCCAGGGCCCTGAGGCTCTGCCCGC---------------CGAGGTGACCCCCA-TGACCTCCATCCCAGCTCCTCCTGGCTGCCCCAC i cebCap1.NW_016107454v1 I 9 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e aotNan1.NW_018509326v1 3370398 87 + 7587287 I a score=1085863.000000 s hg38.chr2_KI270769v1_alt 95856 112 + 120616 CACCCACTCCTCAAATGCCCACAGTGAGCCTGGGGTCCTGCTGCCTGTGGAGTGGACCCAGTGC--GTCTCCCTAAAGCCTCCAGCTGGCTTGGCCTTTGTCTCAGCCTCCACC s panTro5.chr2A 3558421 112 + 111504155 CACCCACTCCTCAAATGCCCACAGTGCGCCTGGGGTCCTGCTGCCTGTGGAGTGGACCCAGTGC--GTCTCCCTAAAGCCTCCAGCTGGCTTGGCCTTTGTCTCAGCCTCCACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3418723 112 + 114371477 CACCCACTCCTCAAATGCCCACAGTGAGCCTGGGGTCCTGCTGCCTGTGGAGTGGACCCAGTGT--GTCTCCCTAAAGCCTCCAGCTGGCTTGGCCTTTGTCTCAGCCTCCACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297352 112 + 637652 CACCCACTCCTCCTGACCCCACAGTGAGCCTGGGGTCCTGCTGCCTGTGGAGTGGACCCAGTGC--ATCTCCCTAAAGCCTCCAGCTGGCTTGGCCTTTGTCTCAGCCTCCACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093035 112 + 81552678 CACCCACTCCTCAAATGCCCACAGTGATCCTGGGGTCCTGCTGCCTGTGGAGTGGACCCAGTGC--ATCTCCCTAAAGCCTCCGGCTGGCTCGGCCTTTGTCTCAGCCTCCACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3356830 114 + 108979918 CACCCACTCCTCAAATGCCCACAGTGAGCCTGGGGTCCTGCTGCCTGTGGAGTGGGCCTGGTGCGTGTCTCCCTAGAGCCCCCGGCTGGCTCAGCCTTTGTCTCAGCCTCCACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5068963 114 - 111193037 CACCCACTCCTCAAATGCCCACAGTGAGCCTGGGGTCCTGCTGCCTGTGGAGTGGGCCTGGTGCGTGTCTCCCTAGAGCCCCCGGCTGGCTCAGCCTTTGTCTCAGCCTCCACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460240 114 + 3644372 CACCCACTCCTCAAATGCCCACAGTGAGCCTGGGGTCCTGCTGCCTGTGGAGTGGGCCTGGTGCGTGTCTCCCTAGAGCTCCCGGCTGGCTCAGCCTTTGTCTCAGCCTCCACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3416667 111 - 10304083 CACCCACTCCTCAAATGCCCACAGT-AGCCTGGGGTCCTGCTGCCTGTGGAGTGGGCCTGGTGC--GTCTCCCTAGAGCCCCCGGCTGGCTCGGCCTTTGTCTCAGCCTCCACC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3517594 112 - 107702431 CACCCACTCCTCAAATGCCCACAGTGAGCCTGGGGTCCTGCTGCCTGTGGAGTGGGCCTGGTGC--GTCTCCCTAGAGCCCCCGGCTGGCTCGGCCTTTGTCTCAGCCTCCACC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1048637 111 + 1565135 CACCCACTCCTCAAATGCCCACAGT-AACCTGGGGTCCTGCTGCCTGTGGAGTGGGCCTGGTGC--GTCTCCCTAGAGCCCCCGGCTGGCTCAGCCTTTGTCTCAGCCTCCACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3410904 112 - 13651311 CACCCACTCCTCAAATGCCCACAGTGAGCCTGGGGTCTTGCTGCCTGTGGAGTGGGCCTGGTGC--GTTTCCCCAGAGCCCCCGGCTGGCTCAGCCTTTGTCTGAGCCTCCACC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3498595 112 - 108792865 CACCCACTCCTTGAATGCCCACAGTGAGCCCAGGGTCCTGCTGCCTGTGGAGTGGGCCCAGCAC--GTCTCCCTGAAGCCCCCAGCTGGCTTGGCCTCTGTCTCAGCTTCCACC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142105 112 - 7082604 CACCCACTTCTTGAATGCCCACAGTGAGCCCGGGGTCCTGCTGCCTGTGCAGTGGGCCTGGCGC--GTCTCCCTAAAGCCCCTAGCTGGCTTGGCCTCTGTCTCAGCTTCCACC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 627861 111 + 5243153 CACCCACTCCTT-CATGCCCACAGTGAGCCCAGGGTACTGCTGCCTGTGCAGAGGGCCCAACAC--ATCTCCCTAAAGCCCCCAGCTGGCTCGGCCTCTGTCTCAGCTTCCACT i cebCap1.NW_016107454v1 C 0 I 10 s aotNan1.NW_018509326v1 3370485 112 + 7587287 cacccactccctgaatgcccacagtgagcccagggtCCTGCTGCCTGTGCAGTGGGCCCGGCGC--GTCTCCCTAAAGCCCCCAGCTGGCTCGGCCTCTGTCTCAGCTTCCACC i aotNan1.NW_018509326v1 I 87 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I a score=160755.000000 s hg38.chr2_KI270769v1_alt 95968 20 + 120616 TGCTTCCCGGGGTCAGGGAA s panTro5.chr2A 3558533 20 + 111504155 TGCTGCCCGGGGTCAGGGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3418835 20 + 114371477 TGCTGCCCGGGGTCAGGGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297464 20 + 637652 TGCTGCCCGGGGTCAGGGAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093147 20 + 81552678 TGCTGCCCGGTGTCAGGGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3356944 20 + 108979918 TGCTGCCCTGTGTCAGGGAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069077 20 - 111193037 TGCTGCCCTGTGTCAGGGAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460354 20 + 3644372 TGCTGCCCTTTGTCAGGGAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3416778 20 - 10304083 TGCTGCCCTGTGTCAGGGAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3517706 20 - 107702431 TGCTGCCCTGTGTCAGGGAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1048748 20 + 1565135 TGCTGCCCTGTGTCAGGGAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411016 20 - 13651311 TGCTACCCTGCATCAGGGAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3498707 20 - 108792865 TGCTGCCTGGTGTCAGGGGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142217 20 - 7082604 TGCTGCCTGGTGTCAGGGGA i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3370597 20 + 7587287 TGCTGCCTGGTATCAGGGGA i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 627972 10 + 5243153 I a score=1437530.000000 s hg38.chr2_KI270769v1_alt 95988 170 + 120616 CCCTGCCAGCTCCCTGGGCGTGCTGAGCTGGACAGTCAGCGAACTGCATCCCTGAACCCTCGCCCACTGCTCCAGGAAACTCACCCACCC-TCAGGGCTGCTGGAATTCACATCCGATGGGTGGAGTTTATTCTCTGCACCCCAGGGCCCCCCACACATGTCAGGAGGAAG s panTro5.chr2A 3558553 168 + 111504155 CCCTGCCAGCTCCCTGGGCGTGCTGAGCTGGACAGTCAGCAAACTGCATCCCTGACCCCTCGCCCACTGCTCCAGGAAACTCACCCAACC-TCAGGGCTGCTGGAATTCACATCCGATGGGTGGAGTTTATTCTCTGCACCCCAGGGCCCCCCACAC--GTCAGGAGGAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3418855 168 + 114371477 CCCTGCCAGCTCCCTGGGCGTGCTGAGCTGGACAGTCAGCAAACTGCATCCCTGACCCCTCGCCCACTGCTCCAGGAAACTCACCCAACC-TCAGGGCTGCTGGAATTCACATCCGATGGGTGGAGTTTATTCTCTGCACCCCAGGGCCCCCCACAC--GTCAGGAGGAAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297484 170 + 637652 CCCTGCCAGCTCCCTGGGCGTGCTGAGCTGGACAGTCAGCGAACTGCATCCCTGACCCCTCGCCCACTGCTCCAGGAAACTCACCCAACC-TCAGGGCTGCTGGAATTCACATCCGATGGGTGGAGTTTATTCTCTGCACCCCAGGGCCCCCCACACATGTCAGGAGGAAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093167 170 + 81552678 CCCCACTAGCTCCCTGGGCATGCTGAGCTGGACAGTCAGCGAACTGCACCCCTGACCCCTCGGCCACTGCTCCAGGAAACTCACCCAACC-CCAGGGCTGCTGGAATTCACATCCGATGGGTGGAGTTTATTCTCTGCACCCCAGGGCCCCTCACACGTGTCAGGAAGAAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3356964 168 + 108979918 CCCCGCCAGCTCCCTGGGTGTGCTGAGCTGGAGAGTCAGCGAACTGCACCCCTGACCCCTCAGCCACAGCTCCAGGAAACTCACCCAACC--CAGGGCTGCTGAAATTCGCATCCGATGGGTGGAGTTTATTCTCTACA-CCCAGGGCCCCTCACGCCTGTCAGGAGGAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069097 168 - 111193037 CCCCGCCAGCTCCCTGGGTGTGCTGAGCTGGAGAGTCAGCGAACTGCACCCCTGACCCCTCAGCCACAGCTCCAGGAAACTCACCCAACC--CAGGGCTGCTGAAATTCGCATCCGATGGGTGGAGTTTATTCTCTACA-CCCAGGGCCCCTCACGCCTGTCAGGAGGAAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460374 168 + 3644372 CCCCGCCAGCTCCCTGGGTGTGCTGAGCTGGAGAGTCAGCGAACTGCACCCCTGACCCCTCAGCCACAGCTCCAGGAAACTCACCCAACC--CAGGGCTGCTGAAATTCGCATCCGATGGGTGGAGTTTATTCTCTACA-CCCAGGGCCCCTCACGCCTGTCAGGAGGAAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3416798 168 - 10304083 CCCCGCCAGCTCCCTGGGCGTGCTGAGCTGGAGAGTCAGCGAACTGCACCCCTGACCCCTCAGCCACAGCTCCAGGAAACTCACCCAACC--CAGGGCTGCTGAAATTCGCATCCGATGGGTGGAGTTTATTCTCTACA-CCCAGGGCCCCTCATGCCTGTCAGGAGGAAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3517726 167 - 107702431 CCCCGCCAGTTCCCTGGGCGTGCTGAGCTGGAGAGTCAGCGAACAGCACCCCTGACCCCTCAGCCACAGCTCCAGGAAACTCACCCAACC--CAGGGCTGCTGAAATTCGCATCCGATGGGTGGAGTTT-TTCTCTACA-CCCAGGGCCCCTCACACCTGTCAGGAGGAAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1048768 167 + 1565135 -CCCGCCAGCTCCCTGGGCGTGCTGAGCTGGAGAGTCAGCGAACTGCACCCCTGACCCCTCAGCCACAGCTCCAGGAAACTCACCCAACC--CAGGGCTGCTGAAATTCGCATCCGATGGGTGGAGTTTATTCTCTACA-CCCAGGGCCCCTCACACCTGTCAGGAGGAAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411036 166 - 13651311 CTCCGCCAGCTCCCTGGGCGTGCTGAGCTGGAGAATCAGTGAACTGCACCC--GACCCCTCAGCCACGGCTCCAGGAAACTCACTCAATC--CAGGGCTGCTGAAATTCGCATCCAATGGGTGGAGTTTATTCTCTACA-CCCAGGGCCCCTCACACCTGTCAGGAGGAAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3498727 126 - 108792865 CCCCGCCAGCTCCCACGG---------------------------------------------CCACTACTCCAGGAAACTTGCCCCAACACCAGCGCTGCTGGAATTCGCATCCGATGGATGGAGTGTCTTCTCTGCATCCCAGGGCCCCTCACACCTGCCAGGGGGAAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142237 168 - 7082604 CTCTGCCAGCTCCCATGGCATGCTGAGCTGGACAGTCAGCAAACTGCACCCCTGACCCCT---CAGCCACTACAGTAAACTCACTCCAACACCAGCGCTGCTGGAGTTCACATCCAGTGGATGGAGTGTATTCTCTGCACCCCAGGGCCCCTCACACCTGCCAGGAGGAAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 627982 163 + 5243153 CCCCGCCAGCTCCCATGGCGTGCTGAGCTGGACAGTCAGCAAACTGCACCCCTGACCCCTCAGCCACTACTCCAGGAAAC--ACCCCAACACCA-CGCTGCTGGAGTTCGCATCTGATGGA-----TGTATTCTCTGCACCCCAGGGCACCTCACACCTGCCAGGAGGAAG i cebCap1.NW_016107454v1 I 10 I 258 s aotNan1.NW_018509326v1 3370617 170 + 7587287 CCCCGCCAGCTCCCACGGCGTGCTGAGCTGGACAGTCGGCAAACTGCACCCCTGACCCTCAG-CCACTACTTCAGGAAACTCACCCCAATGCCAGCGCTGCTGGAATTCACATCCGATGGATGGAGTGTATTCTCTGCACCCCAGGGCCCCTCACACCTGCCAGGAGGAAG i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I a score=120260.000000 s hg38.chr2_KI270769v1_alt 96158 16 + 120616 AGCTGCCCTGGCACCA s panTro5.chr2A 3558721 16 + 111504155 AGCTGCCCTGGCACCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419023 16 + 114371477 AGCTGCCCTGGCACCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297654 16 + 637652 AGCTGCCCTGGCACCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093337 16 + 81552678 AGCTGCCCTGGCACCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3357132 16 + 108979918 AGCTGCCCTGGCACCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069265 16 - 111193037 AGCTGCCCTGGCACCA i macFas5.chr13 C 0 I 2 s macNem1.NW_012011978v1 3460542 16 + 3644372 AGCTGCCCTGGCACCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3416966 16 - 10304083 AGCTGCCCTGGCACCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3517893 16 - 107702431 AGCTGCCCTGGCACCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1048935 16 + 1565135 AGCTGCCCTGGCACCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411202 16 - 13651311 AGCTGCCTTGGCACCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3498853 16 - 108792865 CATGGCCCTGGCTCCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142405 16 - 7082604 CATGGCCCTGGCTCCT i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3370787 16 + 7587287 CATGGCCTTGGCTCCT i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I a score=17381.000000 s hg38.chr2_KI270769v1_alt 96174 2 + 120616 TG s panTro5.chr2A 3558737 2 + 111504155 TG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419039 2 + 114371477 TG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297670 2 + 637652 TG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093353 2 + 81552678 TG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3357148 2 + 108979918 TG i rheMac8.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460558 2 + 3644372 TG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3416982 2 - 10304083 TG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3517909 2 - 107702431 TG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1048951 2 + 1565135 TG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411218 2 - 13651311 TG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3498869 2 - 108792865 TG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142421 2 - 7082604 TG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3370803 2 + 7587287 TG i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e macFas5.chr13 5069281 2 - 111193037 I a score=96417.000000 s hg38.chr2_KI270769v1_alt 96176 11 + 120616 GGTAGACTGCA s panTro5.chr2A 3558739 11 + 111504155 GGTAGACTGCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419041 11 + 114371477 GGTAGACTGCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297672 11 + 637652 GGTAGACTGCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093355 11 + 81552678 GGTAGACTGCA i nomLeu3.chr19 C 0 I 53 s rheMac8.chr13 3357150 11 + 108979918 GGTAGACTGCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069283 11 - 111193037 GGTAGACTGCA i macFas5.chr13 I 2 C 0 s macNem1.NW_012011978v1 3460560 11 + 3644372 GGTAGACTGCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3416984 11 - 10304083 GGTAGACTGCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3517911 11 - 107702431 GGTAGACCGCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1048953 11 + 1565135 GGTAGACTGCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411220 11 - 13651311 GGCAGACTGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3498871 11 - 108792865 GGTAGACTATG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142423 11 - 7082604 GGTAGACTGTG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3370805 11 + 7587287 GGTAGACTGTG i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I a score=9100.000000 s hg38.chr2_KI270769v1_alt 96187 1 + 120616 G s panTro5.chr2A 3558750 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419052 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297683 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3357161 1 + 108979918 G i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069294 1 - 111193037 G i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460571 1 + 3644372 G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3416995 1 - 10304083 G i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3517922 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1048964 1 + 1565135 G i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411231 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3498882 1 - 108792865 G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142434 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3370816 1 + 7587287 G i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e nomLeu3.chr19 3093366 53 + 81552678 I a score=239109.000000 s hg38.chr2_KI270769v1_alt 96188 35 + 120616 GGAGACCCCAGGATGCGGGGAAACCCCAGGATATG s panTro5.chr2A 3558751 35 + 111504155 GGAGACCCCAGGATGCAGGGAGACCCCAGGATATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419053 35 + 114371477 GGAGACCCCAGGATGCAGGGAGACCCCAGGATATG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297684 34 + 637652 GGAGACCCCAGGATGCAGGGAGACCCCAGGATAT- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093419 35 + 81552678 GAAGGCCCCAGGCTGCAGGGAGACCCCAGGATGTG i nomLeu3.chr19 I 53 T 88 s rheMac8.chr13 3357162 34 + 108979918 GGAGACCCCAGGATGTGGGGAGA-CCCAGGATATG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069295 34 - 111193037 GGAGACCCCAGGATGTGGGGAGA-CCCAGGATATG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460572 34 + 3644372 GGAGACCCCAGGATGTGGGGAGA-CCCAGGATATG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3416996 33 - 10304083 GGAGA-CCCAGGATGTGGGGAGA-CCCAGGATATG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3517923 35 - 107702431 GGAGACCCCGGGCTGTGAGAAGGCCCCAGGCTGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1048965 34 + 1565135 GGAGACCCCAGGATGTGGGGAGA-CCCAGGATATG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411232 34 - 13651311 GGAGACCCCAGGATGTGGGGAGA-CCCAAGATATG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3498883 35 - 108792865 GGAGGCCCCAGGCTGTAGGGAAACCCCAGGCTGCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142435 35 - 7082604 GGAGGCCCCAGGATTCAGGGAGGCCCTAGGCTGTG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3370817 35 + 7587287 GGAGGCCCCGGGCTGTGGGGAGGCCCCGGGCTGTG i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I a score=47106.000000 s hg38.chr2_KI270769v1_alt 96223 17 + 120616 GGGAGA-------------------------------------------------------------------------CCCCAGGATGC s panTro5.chr2A 3558786 17 + 111504155 GGGAGA-------------------------------------------------------------------------CCCCAGGATAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419088 16 + 114371477 GGGAGA--------------------------------------------------------------------------CCCAGGATGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297718 17 + 637652 GGGAGA-------------------------------------------------------------------------CCCCAGGATGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093366 17 + 81552678 GGGAGA-------------------------------------------------------------------------CCCCAGGATGC i nomLeu3.chr19 T 88 C 0 s rheMac8.chr13 3357196 15 + 108979918 --GGAA-------------------------------------------------------------------------CCCCAGGATAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069329 15 - 111193037 --GGAA-------------------------------------------------------------------------CCCCAGGATAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460606 15 + 3644372 --GGAA-------------------------------------------------------------------------CCCTAGGATAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3417029 15 - 10304083 --GGAA-------------------------------------------------------------------------CCCCAGGATAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3517958 88 - 107702431 --GGAAGGCCCCAGGCTGTGGGGAGACCCCAGGCTGTGGGGAGACCCCAGGCTGTGGGGAGACCCCGGGCTGTGGGGAGACCCAGGATAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1048999 15 + 1565135 --GGAA-------------------------------------------------------------------------CCCCAGGATAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411266 15 - 13651311 --GGAA-------------------------------------------------------------------------CCCCAGGATAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3498918 17 - 108792865 GGGAGT-------------------------------------------------------------------------CCCTGGGCTGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142470 13 - 7082604 GAGAGA-------------------------------------------------------------------------CCC----CTGC i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3370852 17 + 7587287 GGGAAA-------------------------------------------------------------------------CCCAGGGCTGC i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I a score=-20020.000000 s hg38.chr2_KI270769v1_alt 96240 5 + 120616 GGGGA- s panTro5.chr2A 3558803 5 + 111504155 GGGGA- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419104 5 + 114371477 GGGGA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297735 5 + 637652 GGGGA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093383 5 + 81552678 AGGCA- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3357211 1 + 108979918 G----- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069344 1 - 111193037 G----- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460621 1 + 3644372 G----- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3417044 1 - 10304083 G----- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3518046 1 - 107702431 G----- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049014 1 + 1565135 G----- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411281 1 - 13651311 G----- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3498935 5 - 108792865 -GGGGA i calJac3.chr14 C 0 C 0 s aotNan1.NW_018509326v1 3370869 5 + 7587287 -GGGGA i aotNan1.NW_018509326v1 C 0 I 39 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I a score=1691.000000 s hg38.chr2_KI270769v1_alt 96245 14 + 120616 AACCCCAGGATATG s nomLeu3.chr19 3093388 14 + 81552678 GACCCCAGGATGTG i nomLeu3.chr19 C 0 T 36 s calJac3.chr14 3498940 14 - 108792865 GACCCTGGTCTGCA i calJac3.chr14 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e colAng1.NW_012118821v1 3411282 0 - 13651311 C e manLeu1.NW_012104432v1 1049015 0 + 1565135 C e chlSab2.chr14 3518047 0 - 107702431 C e cerAty1.NW_012000820v1 3417045 0 - 10304083 C e macNem1.NW_012011978v1 3460622 0 + 3644372 C e macFas5.chr13 5069345 0 - 111193037 C e rheMac8.chr13 3357212 0 + 108979918 C e gorGor5.CYUI01015435v1 297740 0 + 637652 C e panPan2.chr2A 3419109 0 + 114371477 C e panTro5.chr2A 3558808 0 + 111504155 C a score=190875.000000 s hg38.chr2_KI270769v1_alt 96259 50 + 120616 GGGAGACCCCAGGATGCGGGGAGACCCCAGGATGTGGGGAGACCCCAGGC s panTro5.chr2A 3558808 28 + 111504155 ----------------------GATCCCAGGATGTGGGGAGACCCCAGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419109 28 + 114371477 ----------------------GATCCCAGGATGTGGGGAGACCCCAGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297740 46 + 637652 ----GACCCCAGGATGCGGGGAGACCCCAGGATGTGGGGAGACCCCAGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093366 50 + 81552678 GGGAGACCCCAGGATGCAGGCAGACCCCAGGATGTGGGGAGGCCCCAGGC i nomLeu3.chr19 T 36 I 34 s rheMac8.chr13 3357212 50 + 108979918 AGAAGGTCCCAGGCTGCAGGGAGACCCCAGGATATGGGGAGACCCCAGAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069345 50 - 111193037 AGAAGGTCCCAGGCTGCAGGGAGACCCCAGGATATGGGGAGACCCCAGAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460622 50 + 3644372 AGAAGGCCCCAGGCTGCGGGGAGACCCCAGGATGTGGGGAGACCCCGGGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3417045 50 - 10304083 AGAAGGTCCCAGGCTGCAGGGAGACCCCAGGATGTGGGGAGACCCCGGAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3518047 49 - 107702431 GGGAGACCCCAGGCTGTGGGGAGA-CCCAGGATATGGGGAGACCCCGGGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049015 50 + 1565135 AGAAGGTCCCAGGCTGCAGGGAGACCCCAGGATATGGGGAGACCCCAGAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411282 15 - 13651311 AGAAGGTCCCAGGCT----------------------------------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3498954 49 - 108792865 GGGAGGCCCC-GGCTGTAGGGAAGCCTCAGGCTGTGGGGAGGCCCCAGGG i calJac3.chr14 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I a score=89552.000000 s hg38.chr2_KI270769v1_alt 96309 19 + 120616 TG---------------------------------TGAGAAGGCCCCAGGCT s panTro5.chr2A 3558836 19 + 111504155 TG---------------------------------TGAGAAGGCCCCAGGCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419137 19 + 114371477 TG---------------------------------TGAGAAGGCCCCAGGCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297786 19 + 637652 TG---------------------------------TGAGAAGGCCCCAGGCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093450 19 + 81552678 TG---------------------------------TGGGGAGACTCCAGGAT i nomLeu3.chr19 I 34 C 0 s rheMac8.chr13 3357262 19 + 108979918 TG---------------------------------TGAGAAGGCCCCAGGCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069395 19 - 111193037 TG---------------------------------TGAGAAGGCCCCAGGCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460672 19 + 3644372 TG---------------------------------TGAGAAGGCCTCAGGCT i macNem1.NW_012011978v1 C 0 I 21 s cerAty1.NW_012000820v1 3417095 19 - 10304083 TG---------------------------------TGAGAAGGCCTCAGGCT i cerAty1.NW_012000820v1 C 0 I 21 s chlSab2.chr14 3518096 52 - 107702431 TGTGGGGAGACCCAGGATATGGGAACCCCAGGATATGAGAAGGTCCCAGGCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049065 19 + 1565135 TG---------------------------------TGAGAAGGCCCCAGGCT i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3499003 19 - 108792865 TG---------------------------------TGGGGAGTCCCCAGGCT i calJac3.chr14 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e colAng1.NW_012118821v1 3411297 0 - 13651311 C a score=81602.000000 s hg38.chr2_KI270769v1_alt 96328 18 + 120616 GCAGGGAGACCCC-----AGGAT s panTro5.chr2A 3558855 18 + 111504155 GCAGGGAGACCCC-----AGGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419156 18 + 114371477 GCAGGGAGACCCC-----AGGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297805 18 + 637652 ACAGGGAGACCCC-----AGGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093469 18 + 81552678 GCAGGGAGACCCC-----AGGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3357281 18 + 108979918 GCGGGGAGACCCC-----AGGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069414 18 - 111193037 GCGGGGAGACCCC-----AGGAT i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3518148 18 - 107702431 GCAGGGAGACCCC-----AGGAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049084 18 + 1565135 GCAGGGAGACCCC-----AGGAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411297 18 - 13651311 GCAGGGAGACCCC-----AGGAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3499022 23 - 108792865 GTGGGGAGACCCCTGCTGGGGAC i calJac3.chr14 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e cerAty1.NW_012000820v1 3417114 21 - 10304083 I e macNem1.NW_012011978v1 3460691 21 + 3644372 I a score=5230.000000 s hg38.chr2_KI270769v1_alt 96346 2 + 120616 AT s panTro5.chr2A 3558873 2 + 111504155 AT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419174 2 + 114371477 AT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297823 2 + 637652 AT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093487 2 + 81552678 GT i nomLeu3.chr19 C 0 T 73 s rheMac8.chr13 3357299 2 + 108979918 GT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069432 2 - 111193037 GT i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3518166 2 - 107702431 GT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049102 2 + 1565135 GT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411315 2 - 13651311 AT i colAng1.NW_012118821v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e calJac3.chr14 3499045 0 - 108792865 C e cerAty1.NW_012000820v1 3417114 21 - 10304083 I e macNem1.NW_012011978v1 3460691 21 + 3644372 I a score=56025.000000 s hg38.chr2_KI270769v1_alt 96348 26 + 120616 -GGGAGACCCCAGGATGCGGGAAGACC s panTro5.chr2A 3558875 26 + 111504155 -GGGAGACCCCAGGATGCGGGAAGACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419176 24 + 114371477 -GGGAGA-CCCAGGATGCGGGAAGA-C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297825 26 + 637652 -GGGAGACCCCAGGATGCGGGAAGACC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3357301 17 + 108979918 GGGGAGACCCCGGGCTG---------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069434 27 - 111193037 GGGGAGACCCCGGGCTGTGAGAAGGCC i macFas5.chr13 C 0 I 72 s chlSab2.chr14 3518168 27 - 107702431 GGGGAGACCCCAGGATGTGGGAAGACC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049104 27 + 1565135 GGGGAGACCCCGGGCTGTGAGAAGGCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411317 27 - 13651311 GAGGAGACCCCAGGATGCAGGGAGACC i colAng1.NW_012118821v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e calJac3.chr14 3499045 0 - 108792865 C e cerAty1.NW_012000820v1 3417114 21 - 10304083 I e macNem1.NW_012011978v1 3460691 21 + 3644372 I e nomLeu3.chr19 3093489 73 + 81552678 T a score=10299.000000 s hg38.chr2_KI270769v1_alt 96374 8 + 120616 CCAGCATA s panTro5.chr2A 3558901 8 + 111504155 CCAGCATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419200 8 + 114371477 CCAGCATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297851 8 + 637652 CCAGCATA i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5069533 8 - 111193037 CCAGGATA i macFas5.chr13 I 72 C 0 s chlSab2.chr14 3518195 8 - 107702431 CCAGACTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049131 8 + 1565135 TCAGGCTA i manLeu1.NW_012104432v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e calJac3.chr14 3499045 0 - 108792865 C e colAng1.NW_012118821v1 3411344 0 - 13651311 C e cerAty1.NW_012000820v1 3417114 21 - 10304083 I e macNem1.NW_012011978v1 3460691 21 + 3644372 I e rheMac8.chr13 3357318 0 + 108979918 C e nomLeu3.chr19 3093489 73 + 81552678 T a score=55117.000000 s hg38.chr2_KI270769v1_alt 96382 72 + 120616 TGAGAAGGCCCC-AGGCTGCAGGGAGACCCCAGGATATGGGGAGAAGCCAGACTGCAGGGAGACCCCAGGATG s panTro5.chr2A 3558909 72 + 111504155 TGAGAAGGCCCC-AGGCTGCAGGGAGACCCCAGGATATGGGGAGAAGCCAGACTGCAGGGAGACCCCAGGATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419208 41 + 114371477 TGAGAAGGCCC--------------------------------AAAGCCAGACTGCAGGGAGACCCCAGGATG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297859 34 + 637652 TGAGAAGGCCC-------------------------------------CAGGCTGCAGGAAGACCCCAGGA-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093416 72 + 81552678 TGAGAAGGCCCC-AGGCTGCAGGGAGACCCCAGGATGTGGGGAGACTCCAGGATGCAGGGAGACCCCAGGATG i nomLeu3.chr19 T 73 C 0 s rheMac8.chr13 3357318 51 + 108979918 -------------------TGAGAAGGCCTCAGGCTATGGGAAGATACCAGGCTGTAGGAAGACCCCAGG--- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069541 72 - 111193037 TGGGGAGAGACC-TGGCTGTGGGGAGACCCTGGGCTATGGGGGGAGGCCAGGCTGTGGGGAAACCCCCAGATG i macFas5.chr13 C 0 T 152 s chlSab2.chr14 3518203 73 - 107702431 TGAGAAGGCCCTAAGGCTGTGGGGAGACCCCAGGATATGGGGAGACCTCAGGATGTGGGGAGACCCCAGGATA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049139 3 + 1565135 TGG---------------------------------------------------------------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411344 54 - 13651311 -----------CCAGACTGTGAGAAGACCCCAGGCTGCGGGGAGACCCCGGGCTGTGAGAAGGCC-------- i colAng1.NW_012118821v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e calJac3.chr14 3499045 0 - 108792865 C e cerAty1.NW_012000820v1 3417114 21 - 10304083 I e macNem1.NW_012011978v1 3460691 21 + 3644372 I a score=6513.000000 s hg38.chr2_KI270769v1_alt 96454 11 + 120616 CAGGGGAGACT s panTro5.chr2A 3558981 11 + 111504155 CAGGGGAGACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419249 11 + 114371477 CAGGGGAGACT i panPan2.chr2A C 0 C 0 s nomLeu3.chr19 3093488 10 + 81552678 T-GGGGAGACT i nomLeu3.chr19 C 0 C 0 s chlSab2.chr14 3518276 10 - 107702431 -TGGGGAGACC i chlSab2.chr14 C 0 I 18 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e calJac3.chr14 3499045 0 - 108792865 C e colAng1.NW_012118821v1 3411398 0 - 13651311 C e manLeu1.NW_012104432v1 1049142 0 + 1565135 C e cerAty1.NW_012000820v1 3417114 21 - 10304083 I e macNem1.NW_012011978v1 3460691 21 + 3644372 I e macFas5.chr13 5069613 152 - 111193037 T e rheMac8.chr13 3357369 0 + 108979918 C e gorGor5.CYUI01015435v1 297893 0 + 637652 C a score=31383.000000 s hg38.chr2_KI270769v1_alt 96465 21 + 120616 CCAGGCTGTGAGAAGGCTCCA s panTro5.chr2A 3558992 21 + 111504155 CCAGGCTGTGAGAAGGCTCCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419260 21 + 114371477 CCAGGCTGTGAGAAGGCTCCA i panPan2.chr2A C 0 C 0 s nomLeu3.chr19 3093498 21 + 81552678 CCAGGATGTGGGCAGACCCCA i nomLeu3.chr19 C 0 T 63 s macFas5.chr13 5069461 21 - 111193037 TCAGGCTATGGGAAGATACCA i macFas5.chr13 T 152 C 0 s chlSab2.chr14 3518304 21 - 107702431 CCAGGCTGTGGGAAGATACCA i chlSab2.chr14 I 18 C 0 s manLeu1.NW_012104432v1 1049142 10 + 1565135 -----------GAAAATACCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411398 21 - 13651311 TCAGGCTATGGGAAGATACCA i colAng1.NW_012118821v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e calJac3.chr14 3499045 0 - 108792865 C e cerAty1.NW_012000820v1 3417114 21 - 10304083 I e macNem1.NW_012011978v1 3460691 21 + 3644372 I e rheMac8.chr13 3357369 0 + 108979918 C e gorGor5.CYUI01015435v1 297893 0 + 637652 C a score=10311.000000 s hg38.chr2_KI270769v1_alt 96486 7 + 120616 AGCTATG s panTro5.chr2A 3559013 7 + 111504155 GGCTATG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419281 7 + 114371477 GGCTATG i panPan2.chr2A C 0 C 0 s macFas5.chr13 5069482 7 - 111193037 GGCTGTA i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3518325 7 - 107702431 GGCTGTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049152 7 + 1565135 GGCTGTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411419 7 - 13651311 GGCTGTA i colAng1.NW_012118821v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e calJac3.chr14 3499045 0 - 108792865 C e cerAty1.NW_012000820v1 3417114 21 - 10304083 I e macNem1.NW_012011978v1 3460691 21 + 3644372 I e rheMac8.chr13 3357369 0 + 108979918 C e nomLeu3.chr19 3093519 63 + 81552678 T e gorGor5.CYUI01015435v1 297893 0 + 637652 C a score=67000.000000 s hg38.chr2_KI270769v1_alt 96493 20 + 120616 GGAAGACACCAGGCTGTGGG s panTro5.chr2A 3559020 20 + 111504155 GGAAGACACCAGGCTGTGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419288 20 + 114371477 GGAAGACACCAGGCTGTGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297893 6 + 637652 --------------TATGGG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3357369 7 + 108979918 -------------CTGTGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069489 20 - 111193037 GGAAGATCCCAGGCTGTGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460712 20 + 3644372 GGAAGACCCCAGGCTGTGGG i macNem1.NW_012011978v1 I 21 C 0 s cerAty1.NW_012000820v1 3417135 20 - 10304083 GGAAGACCCCAGGCTGTGGG i cerAty1.NW_012000820v1 I 21 C 0 s chlSab2.chr14 3518332 20 - 107702431 GGAAGACCCCAGGCTATGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049159 20 + 1565135 GGAAGACCCCAGGCTGTGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411426 20 - 13651311 GGAAGACCCCAGGCTGTGGG i colAng1.NW_012118821v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e calJac3.chr14 3499045 0 - 108792865 C e nomLeu3.chr19 3093519 63 + 81552678 T a score=347553.000000 s hg38.chr2_KI270769v1_alt 96513 64 + 120616 GAGAAGCCAGACTGCAGGGACACGCCAGGATATGGGGAGAGACCTGGCTATGGGGAGAGCCTGG s panTro5.chr2A 3559040 64 + 111504155 GAGAAGCCAGACTGCAGGGACACGCCAGGATATGGGGAGAGACCTGGCTATGGGGACAGCCTGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419308 64 + 114371477 GAGAAGCCAGACTGCAGGGACACGCCAGGATATGGGGAGAGACCTGGCTATGGGGACAGCCTGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297899 64 + 637652 GAGAAGCCAGACTGCAGGGACACGCCAGGATATGGGGAGAGACCTGGCTATGGGGAGAGCCTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093456 64 + 81552678 GAGACTCCAGGATGCAGGGAGACCCCAGGATGTGGGGAGACTCCAGGATGTGGGCAGACCCCAG i nomLeu3.chr19 T 63 M 100 s rheMac8.chr13 3357376 64 + 108979918 GAGAAGCCAGACTGCAGGAACACCCCAGGATATGGGGAGAGACCTGGCTGTGGGGAGACCCTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069509 64 - 111193037 GAGAAGCCAGACTGCAGGAACACCCCAGGATATGGGGAGAGACCTGGCTGTGGGGAGACCCTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460732 64 + 3644372 GCGAAGCCAGACTGCAGGAACACCCCAGGATATGGGGAGAGACCTGGCTGTGGGGAGACCCTGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3417155 64 - 10304083 GAGAAGCCAGACTGCAGGAACACCCCAGGATATGGGGAGAGACCTGGCTGTGGGGAGACCCTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3518352 64 - 107702431 GAGAAGCCAGACTGCAGGAACACCCCAGGATATGGGGAGAGGCCTGGCTGTGGGGAGACCCTGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049179 64 + 1565135 GAGAAGCCAGACTACAGGAACACCCCAGGATATGGGGAGAGACCTGGCTGTGGGGAGACCCTGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411446 64 - 13651311 GAGAAGCCAGACTGCAGGAACACCCCAGGATATGGAGAGAGACCTGGCTGTGGGGAGACCCTGG i colAng1.NW_012118821v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e calJac3.chr14 3499045 0 - 108792865 C a score=34939.000000 s hg38.chr2_KI270769v1_alt 96577 9 + 120616 GCAACAGGG s panTro5.chr2A 3559104 9 + 111504155 GCAACAGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419372 9 + 114371477 GCAACAGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297963 9 + 637652 GCAACAGGG i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3357440 9 + 108979918 GCTATGGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069573 9 - 111193037 GCTATGGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460796 9 + 3644372 GCTATGGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3417219 9 - 10304083 GCTATGGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3518416 9 - 107702431 GCTATGGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049243 9 + 1565135 GCTATGGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411510 9 - 13651311 GCTATGGGG i colAng1.NW_012118821v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e calJac3.chr14 3499045 0 - 108792865 C e nomLeu3.chr19 3093520 100 + 81552678 M a score=158116.000000 s hg38.chr2_KI270769v1_alt 96586 29 + 120616 AGAGGCCAGGCTGTGGGGAAACCCCCAGA s panTro5.chr2A 3559113 29 + 111504155 AGAGGCCAGGCTGTGGGGAAACCCCCAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419381 29 + 114371477 AGAGGCCAGGCTGTGGGGAAACCCCCAGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 297972 29 + 637652 AGAGGCCAGGCTGTGGGGAAACCCCCAGA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3357449 29 + 108979918 GGAGGCCAGGCTGTGGGGAAACCCCCAGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069582 29 - 111193037 GGAGGCCAGGCTGTGGGGAAACCCCCAGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460805 29 + 3644372 GGAGGCCAGGCTGTGGGGAAACCCCCAGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3417228 29 - 10304083 GGAGGCCAGGCTGCGGGGAAACCCTCAGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3518425 29 - 107702431 AGAGGCCAGGCTGTGGGGAAACCCCCAGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049252 29 + 1565135 AGAGGCCAGGCTGCGGGGAAACCCCCAGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411519 29 - 13651311 AGAGGCCAGGCTGCGGGGAAACCCCCAGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3499045 22 - 108792865 AGAGGCCAGGCTGGGGGAAGAC------- i calJac3.chr14 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e saiBol1.JH378218 3142483 0 - 7082604 C e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e nomLeu3.chr19 3093520 100 + 81552678 M a score=50800.000000 s hg38.chr2_KI270769v1_alt 96615 12 + 120616 TGGGGACAGAGG------------------ s panTro5.chr2A 3559142 12 + 111504155 TGGGGACAGAGG------------------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419410 12 + 114371477 TGGGGACAGAGG------------------ i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 298001 12 + 637652 TGGGGACAGAGG------------------ i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3357478 12 + 108979918 TGGGGATAGAGG------------------ i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069611 12 - 111193037 TGGGGATAGAGG------------------ i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460834 12 + 3644372 TGGGGATAGAGG------------------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3417257 12 - 10304083 TGGGGATAAAGG------------------ i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3518454 12 - 107702431 TGGGGATAGAGG------------------ i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049281 12 + 1565135 TGGGGATAGAGG------------------ i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411548 12 - 13651311 TGGGGATAGAGG------------------ i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3499067 1 - 108792865 -----------------------------A i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142483 30 - 7082604 TGGGGACAGAGGCCAGGCTGGGGGAAGACA i saiBol1.JH378218 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e aotNan1.NW_018509326v1 3370874 39 + 7587287 I e nomLeu3.chr19 3093520 100 + 81552678 M a score=147874.000000 s hg38.chr2_KI270769v1_alt 96627 23 + 120616 CCAGGCTGTGAATGGGAAACT--GC s panTro5.chr2A 3559154 23 + 111504155 CCAGGCTGTGAATGGGAAACT--GC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419422 23 + 114371477 CCAGGCTGTGAATGGGAAACT--GC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 298013 23 + 637652 CCAGGCTGTGAATGGGAAACT--GC i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3357490 23 + 108979918 CCAGGCTGCGAATGGGAAACA--GT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069623 23 - 111193037 CCAGGCTGCGAATGGGAAACA--GT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460846 25 + 3644372 CCAGGCTGCAAATGGGAAACAGTGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3417269 25 - 10304083 CCAGGCTGCGAATGGGAAACAGTGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3518466 25 - 107702431 CCAAGCTGCGAATGGGAAACAGTGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049293 25 + 1565135 CCAGGCTGCGAATGGGAAACAGTGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411560 25 - 13651311 CCAGGCTGCGAATGGGAAACAGTGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3499068 25 - 108792865 CCAGGCTGCGAATGAGAAACGGTGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142513 23 - 7082604 TCAGGCTGCGAATGAGAAAC--TGT i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3370913 25 + 7587287 CCAGGCTGCGAATGAGAAACAGTGT i aotNan1.NW_018509326v1 I 39 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e cebCap1.NW_016107454v1 628145 258 + 5243153 I e nomLeu3.chr19 3093520 100 + 81552678 M a score=1195938.000000 s hg38.chr2_KI270769v1_alt 96650 160 + 120616 GTCTGTTTCCTGAGGCTGCCGTAAGACACTCCTAAGTATGAGAGCACAGACTTGATTCCCTCCCCATTCTGGAGGCTGCCGTCAGCAGGCCATTCCTAGAGAGGCTCCTTCCTCTCCTCTTCCGGCCTCTGGGGGCTCCCGGTGCCCTTGGCTTGTGGCC s panTro5.chr2A 3559177 160 + 111504155 GTCTGTTTCCTGAGGCTGCCGTAAGACACTCCTAAGTATGACAGCACAGACCTGATTCCCTCCCCATTCTGGAGGCTGCTGTCAGCAGGCCATTCctagagaggctccttcctctcctcttccggcctctgggggctcccggtgcccttggcttgtggcc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419445 160 + 114371477 GTCTGTTTCCTGAGGCTGCCGTAAGACACTCCTAAGTATGACAGCACAGACCTGATTCCCTCCCCATTCTGGAGGCTGCTGTCAGCAGGCCATTCctagagaggctccttcctctcctcttccggcctctgggggctcccggtgcccttggcttgtggcc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 298036 159 + 637652 ATCTG-TTCCTGAGGCTGCCGTAAGACACTCCTAAGTATGAGAGCACAGACCTCATTCCCTCCCCATTCTGGAGGCTGCTGTCAGCAGGCCATTCctagagaggctccttcctctcctcttccggcctctgggggctcccggtgcccttggcttgtggcc i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3357513 143 + 108979918 GCCTATTTCCTGAGGCTGCCATCAGACACT--------------CACAGAACTGATTCCCTCCCCGTTTTGGTGGCTGCTGATGGT-GGCCACTCctagagaggctccttcctctcctcttccagcctctgggggctcccggtgcccttggcttgtg--c i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069646 145 - 111193037 GCCTGTTTCCTGAGGCTGCCATAAGACACT--------------CACAGAACTGATTCCCTCCCCGTTTTGGTGGCTGCTGATGGT-GGCCActcctagagaggctccttcctctcctcttccagcctctgggggctcccggtgcccttggcttgtggcc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3460871 145 + 3644372 GCCTGTTTCCTGAGGCTGCCATAAGACACT--------------CACAGAACTGATTCCCTCCCCGTTTTGGTGGCTGCTGATGGT-GGCCACTCctagagaggctccttcctctcctcttccagcctctgggggctctcggtgcccttggcttgtggcc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3417294 159 - 10304083 GCCTGTTTCCTGAGGCTGCCATAAGACACTCACAAGTATGAGACCACAGAACTGATTCCCTCCCCGTTTTGGTGGCTGCTGATGGT-GGCCACTCctagagaggctccttcctctcctcttccagcctctgggggctcccagtgcccttggcttgtggcc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3518491 155 - 107702431 GTCTGTTTCCTGAGGCTGCCATAAGA----CACAAGTATGAGACCACAGAACTGATTCCCTCCCCGTTTTGGTGGCTGCTGACGGT-GGCCActcctagagaggctccttcctctcctcttccagcccctgggggctcccggtgcccttggcttgtggcc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049318 159 + 1565135 GCCTGTTTCCTGAGGCTGCCATAAGACACTCACAAGTATGAGACCACAGAACTGATTCCCTCCCCGTTTTGGTGGCTGCTGATGGT-GGCCACTCctagagaggctccttcctctcctcttccagcctctgggggctcccagtgcccttggcttgtggcc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411585 155 - 13651311 ATCTGTTTCCTGAGGCTGCCGTAAGACACA----AGTATGAGACCACAGAACTGATTCCCTCCCCGTTTTGGTGGCTGCTGACGGT-GGCCACTCctagagaagctccttcctctcctcttccagcctctgggggctcccggtgcccttggcttgtggcc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3499093 156 - 108792865 GTCTGTTTCCTGAGGCTGCCATAAGACACAC-TAAGTGTGAGAGCACAGAACTGATTCTTTCCCCATTCTGGTGGCTGCTGTCAGCGTGCCAGTCCTAGAGAGGCTCCTTC--CTCCTCTTCCAGCCTTGGGGGCTCCC-GCTGCccttggcttgtggcc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142536 160 - 7082604 GGCTGTTTCCCGAGGCTGCCGTAAGACGCACATAAGTGTGAGAGCACAGAACTGATTCCCTCCCTGTTCTGGAGGCTGCTGTCAGGGGGACAGTCCTAgagaggctccttcctctcctcttccagcctcggggggtccctgctgcccttggcttgtggcc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 628403 159 + 5243153 GTCTGTTTCCCGAGGCTGCCGTAAGACACACGTAAGTGTGAGAGCACAGAACTGATTCCCTGCCCGCTCTGGAGGCTGCTGTCAGCGGGCCAGTCctagagaggctcctgcctctcctcttccagcctcgggggccccc-actgcccttggcttgtggct i cebCap1.NW_016107454v1 I 258 C 0 s aotNan1.NW_018509326v1 3370938 158 + 7587287 GTCTGTTTCCCGAAGCTGCCGTAAGACACAC--AAGTGTGAGAGCACAGAACTGATTCCTTCCCCATTCTGGAGGCTGCTGTCAGCGGGCCAGTCCTggagaggctccttcctctcctcttccagccttggggggctcccactgcccttggcttgtggcc i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I e nomLeu3.chr19 3093520 100 + 81552678 M a score=2230602.000000 s hg38.chr2_KI270769v1_alt 96810 245 + 120616 Acatcactccggtctctcctc--tggtcacacagcctcctccgtgtgccaaatcttttgcggagccacttaagatggtatttggggcccacggtaatccagaataatcttctcatctcaagatccttaagctaattacatctgcaaaagccctttttccaaaacaggtcacgtgcacaggtcccagggcttaggatggggccgtgaccttgggAATGCTCAGCGGCCAACCACAAACGCCCACTGAG s panTro5.chr2A 3559337 245 + 111504155 acatcactccggtctctcctc--tggtcacacagcctcctccgtgtgccagatcttttgcggagccacttaagatggtatttggggcccacggtaatccagaataatcttctcatctcaagatccttaagctaattacatctgcaaaagccctttttccaaaacaggtcacgtgcacaggtcccagggcttaggatggggccgtgaccttgggAATGATCAGCGGCTGACCACAAACGCCCACTGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419605 245 + 114371477 acatcactccggtctctcctc--tggccacacagcctcctccgtgtgccagatcttttgcggagccacttaagatggtatttggggcccacggtaatccagaataatcttctcatctcaagatccttaagctaattacatctgcaaaagccctttttccaaaacaggtcacgtgcacaggtcccagggcttaggatggggccgtgaccttgggAATGATCAGCGGCTGACCACAAACGCCCACTGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 298195 245 + 637652 acatcactccggtctctcctc--tggtcacacagcctcctccgtgtgccaaatcttttgcggagccacttaagatggtatttggggcccacggtaatccagaataatcttgtcatctcaagatccttaagctaattacatctgcaaaagccctttttccaaaacaggtcacctgcacaggtcccagggcttaggatggggccatgaccttgggaatgatcagcggccgaccacaAACGCCCACTGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093620 245 + 81552678 Acatcactccagtctctcctc--tggtcacacagcctcctctgtgtgccaaatctcttgcagagccacttaagatggtatttggggcccacagtaatccagaataatcttctcatctcaagatccttaagctaattacatctgcaaaagccctttttccaaaacaggtcacgtgcacaggtcccagggcttaggatggggccgtgaccttgggaatgatcagcggccaaccacaAACGCCCACTCAG i nomLeu3.chr19 M 100 C 0 s rheMac8.chr13 3357656 242 + 108979918 acatcactgcggtctctcctc--tggtcacacagcctcctctgtgtgcc-aatctct-gcggagccactgaagat-gtatttgggccacnnnngaatccagaataatcttctcatctcaagatccttaagctaattacatctgcaaaagccctttttccacaacaggtcacgtgaacaggtcccagggcttaggatgaggacatgatcttGGGAATGATCGGTGGCCGACCACAAACGCCCACTGAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5069791 245 - 111193037 acatcactgcggtctctcctc--tggtcacacagcctcctctgtgtgccaaatctctggcggagccactgaagatggtatttgcggcccacnggaatccagaataatcttctcatctcaagatccttaagctaattacatctgcaaaagccctttttccacaacaggtcacgtgaacaggtcccagggcttaggatggggacatgatcttgggaatgatcagtggccgaccacaAACGCCCACTGAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3461016 245 + 3644372 acatcactgcggtctctcctc--tggtcacacagcctcctctgtgtgccaaatctctggcggagccactgaagatggtatttggggcccacgggaatccagaataatcttctcatctcaagatccttaagctaattacatctgcaaaagccctttttccacaacaggtcacgtgaacaggtcccagggcttaggatggggacatgatcttGGGAATGATCGGTGGCCGACCACAAACGCCCACTGAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3417453 245 - 10304083 acatcactgcggtctctcctc--tggtcacacagcctcctctgtgtgccaaatctctggcggagccactgaagatggtatttgaggcccacgggaatccagaataatcttctcatctcaagatccttaagctaattacatctgcaaaagccctttttccacaataggtcacgtgaacaggtcccagggcttaggatggggacatgatcttGGGAATGATCGGTGGCCGACCACAAACGCCCACTGAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3518646 245 - 107702431 acatcactgcagtctctcctc--tggtcacacagcctcctctgtgtgccagatctcttggggagccactgaagatggtatttggggcccacgggaatccagaataatcttctcatctcaagatccttaagctaattacatctgcaaaagccctttttccacaacaggtcatgtgaacaggttccagggcttaggatggggacgtgaccttgggAATGATCGGTGGCCGACCACAAACGCCCACTGAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049477 245 + 1565135 acatcactgctgtctctcctc--tggtcacacagcctcctctgtgtgccaaatctctggcggagccactgaagatggtatttggggcccacgggaatccagaataatcttctcatctgaagatccttaagctaattacatctgcaaaagccctttttccacaataggtcacgtgaacaggtcccagggcttaggatggggacatgatcttGGGAATGATCGGTGGCCGACCACAAACGCCCACTGAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411740 240 - 13651311 acatcactgcagtctctcctc--tggtcacacagcctcctctgtgtgccaaatctcttgtggagccactgaagatggtatttggggcccacgggaatccaaaataatcttctc-----aagattcttaagctaatgacatctgcaaaagccctttttccacaacaggtcacgtgaacaggtcccagggcttaggatagggacgtgaccttGGGAATGATCGGTGGCCGACCACAAACGCCCACTGAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3499249 240 - 108792865 gta----tccagtctctcctctgtggtcacacggcctcctctgtgtgctgaatctctcgtggagccacttaagctgggatatgggcccc--gataagctaggatcatcttctcatctcaagagcctcaagctaaccacatctgc-aaggccctttttccaaaacaggtcatgtgcacaggtcccagagcttaggatggggacgtgactttgggAATGACCAGAAGTCGACCACAGACGCCCACTGAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142696 241 - 7082604 gtatcactccagcctctcctctgtggccacacggcctcctctgtgtgccgaatctctcgtggagccacttgagctggtgtttgggcccc--ggtgatccaggatca---gctaatctgaagagcctcaagctaaccacatctgc-aaggccctttttccagaacaggtcacgtgcacaggtcccagggcttaggatggggacgtgactttgggAATGATCAGAGGCCGACCACAGACGCCCACTGAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 628562 241 + 5243153 gtatcactccagcctctcctctgtggccacatggcctcctctgggtgccgaatctctcgtggagccacttgagctgggatttgggcccc--ggtaatccaggatca---tctcatctcaagagcctcaagctaaccacatctgc-aaagccctttttccagaacaggtcacgtgcacaggtcccagggcttaggatgggaacgtgactttGGGAATGATCAGAGGCCGACCACGGACGCCCACTGAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3371096 240 + 7587287 gtatcactccagtctctcctc--tagtcacacggcctcctctgtgtgccgaatctctcgtggag--attcgagctgggatttgggcccc--ggtaatccaggatcatcttctcatttcaagaggctcaagctaaccacatctgc-aaggccctttttccaaaacaggtcacgtgcacaggtcccagggcttaggatgggaacgtgactttGGGAATGATCAGAGGCCAGCCACAGAGGCCCACTGAG i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e otoGar3.GL873658 2577882 1566 + 5252280 I a score=2772672.000000 s hg38.chr2_KI270769v1_alt 97055 326 + 120616 tagcttcctggggctgctgtaacaaggtgccc------------------------------------------aaaca-gagcagcttaaaatagaactgcatcttctcacagttcagggggctggaaggctgcacgcgagctgc---aggc--tggctgcattctctggaggctctgcagtggcgtctgtcccaggcctctctccgtggt-----ggccatggcagtcctcggtgctcctggctttcggccacatggccccagtctctgcctttgtgtttatgtggcctcctccagtgtctctgtcttctgttcctgcagagacaacagtctttggagctagggcccaccctagtccaggatgattccatctcaaac s panTro5.chr2A 3559582 326 + 111504155 tagcttcctggggctgctgtaacaaggtgccc------------------------------------------aaaca-gagcagcttaaaatagaactgcatcttctcacagttcagggggccggaaggctgcacgcgagctgc---aggc--tggctgcattctctggaggctctgcagcggcgtctgtcccaggcctctctccgtggt-----ggccgtggcagtcctcggtgctcctggctttcggccacatggccccagtctctgcctctgtgtttatgtggcctcctccagtgtctctgtcttctgttcctgcagagacaacagtctttggagctagggcccaccctagtccaggatgattctatctcaaac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3419850 326 + 114371477 tagcttcctgggactgctgtaacaaggtgccc------------------------------------------aaaca-gagcagcttaaaatagaactgcatcttctcacagttcagggggccggaaggctgcacgcgagctgc---aggc--tggctgcattctctggaggctctgcagcggcgtctgtcccaggcctctctccgtggt-----ggccgtggcagtcctcggtgctcctggctttcggccacatggccccagtctctgcctctgtgtttatgtggcctcctccagtgtctctgtcttctgttcctgcagagacaacagtctttggagctagggcccaccctagtccaggatgattccatctcaaac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 298440 326 + 637652 tagcttcctggggctgctgtaacaaggtgccc------------------------------------------aaaca-gagcagcttaaaatagaactgcatcttctcacagttcagggggccagaaggctgcacgcgagctgc---aggc--tggctgcattctctggaggctctgcagtggcgtctgtcccaggcctctctccgtggt-----ggccgtggcagtcctcggtgctcctggctttcggccacatggccccagtctctgcctttgtgtttatgtggcctcctccagtgtctctgtcttctgttcctgcagagacaacagtctttggagctagagcccaccctagtccgggatgattccatctcaaac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3093865 326 + 81552678 tagcttcctggggctgctgtaacaaggtgccc------------------------------------------aaaca-gagcagcttaaaatagaactgcatcttctcacagttcagggggccggaaggctgcacgcgagctgc---aggc--tggctgcgttctctggaggctctgcagtggcgtctgtcccaggcctctctccgtggt-----ggccgtggcagtcctcggtgctcctggctttcggccatatggccccagtctctgcctctgtgtttacgtggcctcctccagtgtctctgtcttctattcctgcagagacaacagtctttggatctagggcccaccctagtccaggatgattccatctcgaac i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3357898 322 + 108979918 tagcttcctggggctcctgtaacaaggtgtcc------------------------------------------aaaca-gagcagcttaaaacagaactgcatcttctcacagctca-ggggccagaaggc--tgagcgagctgc---gggt--gggctgcgttctctggaggctctgcagtggtgtctgtcccaggcctctctccatggt-----gaccatggcagtcctcggtgctcctggc-ttcggccgcaaggccccagtctctgcctctgtgttcgtgtggccgcctcctgtgtctctgtcttctattcctgcagagacaccagtctttggatccagtgcccaccctagtccaggatgatcccatctccaac i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5070036 322 - 111193037 tagcttcctggggctcctgtaacaaggtgtcc------------------------------------------aaaca-gagcagcttaaaacagaactgcatcttctcacagctca-ggggccagaaggc--tgagcgagctgc---gggt--gggctgcattctctggaggctctgcagtggtgtctgtcccaggcctctctccatggt-----gaccgtggcagtcctcggtgctcctggc-ttcggccgcaaggccccagtctctgcctctgtgttcgtgtggccgcctcctgtgtctctgtcttctattcctgcagagacaccagtctttggatccagtgcccaccctagtccaggatgatcccatctccaac i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3461261 318 + 3644372 tagcttcctggggctcctgtaacaaggtgtcc------------------------------------------aaaca-gagcagcttaaaacagaactgcatcttctcacagctca-ggggccagaaggc--tgagcgagctgc---gggt--gggctgcgttcgctggaggctctgcagtggtgtctgtcccaggcctctctccatggt-----gaccgtggcagtcctcggtgctcctggc-ttcggccgcgaggccc--gtctctgcctc--tgttcatgtggccgcctcctgtgtctctgtgttctattcctgcagagacaccagtctttggatctagtgcccaccctagtccaggatgatcccatctccaac i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3417698 324 - 10304083 tagcttcctggggctcctgtaacaaggtgtcc------------------------------------------gaaca-gagcagcttaaaacagaactgcatcttctcacagctca-ggggccagaaggctgtgagtgagctgc---gggt--ggtctgcgttctctggaggctctgcagtggtgtctgtcccaggcctctctccatggt-----gaccgtggcagtcctcggtgctcctggc-tttgaccgcgtggccccagtctgtgcctctgtgttcatgtggccgcctcctgtgtctctgtcttctattcctgcagagacaccagtctttggatctagtgcccaccctagtccaggatgatcccatctccaac i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3518891 323 - 107702431 tggcttcctggggctgctgtaacaaggtgtcc------------------------------------------aaaca-gagcagcttaaaatagaactgcatcttctcacagctca-ggggccggaaggc--tgagtgagctgcggggggt--gggctgcattctctggaggggctgcagtggtgtctgtcccaggc--ctctccatggc-----gaccatggcagtcctcggtgctcctggc-ttcggccgcgtggccccagtctctgcccctgtgttcatgtggccgcctcctgcgtctctgtcttctattcctgcagagacaccagtctttggatctggtgcccaccctaggccaggatgatcccatctccaac i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1049722 324 + 1565135 tagcttcctggggctcctgtaacaaggtgtcc------------------------------------------aaaca-gagcagcttaaaacagaactgcatcttctcacagctca-ggggccagaaggctgtgagtgagctgc---gggt--ggtctgcgttctctggaggcgctgcagtggtgtctgtcccaggcctctctccatggt-----gaccgtggcagtcctcggtgctcctggc-tttgaccgcgtggccccagtctgtgcctctgtgttcatgtggccgcctcctgtgtctctgtcttctattcctgcagagacaccagtctttggatctagtgcccaccctagtccaggatgatcccatctccaac i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3411980 324 - 13651311 tagcttcctagggctgctgtaacaaggtgtcc------------------------------------------aaaca-gagcagcttaaaacagaactgcatcttctcacagctca-ggggccagaaggctgtgagtgagctgc---gggt--gggctgtgttctctggaggcgctgcagtggtgtctgtcccaggcctctctccatggt-----gaccgtggcagtcctcggtgctcctggc-ttcggccgcacggccccaggctctgcctctgtgttcatgtggccgcctcctgtgtctctgtcttctattcctgcagagacaccagtctttggatctagtgcccaccctggtccaagatgatcccatctccaat i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3499489 344 - 108792865 GAGCCTCCTGAGGCTGCTGTAATGAGGTGCCCAATCTGCCCTAGCATCCATGTATTTTCCAGCCTGCTCCATTTaaatg-gggtaccttaagacagaaatgcatcttctcacagtttggagggccagaaggctgccagtaagctgc---gggcgggggttgtgatctatggaggctctgcagcggcatctgtcccgggcctctctccatggt-----ggccgtggcagtcctcggtgcccctggcttgtggtggcatggccccagt--------------------------ctcccgcacctctgtctcctagtcctgcagagacgcaagtctttgggtctagggcccaccctcatccaagaggatttcatctcaaac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3142937 341 - 7082604 GAGCCTACTGAGGCTGCTGTAACGAGGTGCCCCATCTGCCCTAGCGTCCATGTATTTTCCTGCCTGCTCCATTTAAATGtgggcagcttaaaacagaaatgcatcttctcacagttcaggcggccagaaggctgtgagcgagctgc---gggc--aggctgtgatctctggaggttctgcagcggcgtc--tcccgggcctctctccacggt-----ggccgtggcagtccttggtggccctggcttgcggtggcatggccccagt--------------------------ctccggcgtctctgtcttctagtcctgtggagacgcgagtctttgggtctagggcccaccctcgtccaggaggatttcatctgaaac i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 628803 342 + 5243153 GAGCCTCCTGAGGCTGCTGTAAAGAGGTGCCCAGTCTGCCCCAGCGTCCGTGTGTTTTCCAGCCTGCTCCATTTaaatg-gggcagcttaaaacagaaatgcatcttctcacagttcaggggcccagaaggctgcgagcgagctgc---gggc--gggctgtgatctctggaggctctgcagtggcgtctgtcccaggcctctctccacggt-----ggccgtggcagtcctcggtgcccctggcttgtggtggcatggccccagt--------------------------ctcccccacctctgtcttctagtcctgcggaggcgcgagtctttgggtcaagggcccagcctcgtccaggaggatttcatctcaaac i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3371336 342 + 7587287 GAGCCTCCAGAGGCTGCTGTAACGAGCTGCCCAATCTGCCCTAGCATCCGTGTATTTTCCAGCCTGCTCCATTTCaatg-gggcagcttaaaacagaaatttatcttctcacagttcaggcggccagaaggctgtgagcgagctgt---gggc--gggctatgatctctggaggctctgcagcagcgtctgtcccgggcctctctccacggt-----ggctgtggcagtcctcggtgcccctggcttgcggtggcatggccccagt--------------------------ctcccgagcctctgtcttctagtcctgtggaggcgcgagtccttgggtctagggcccaccctcgtccaggaggatttcatctcaaac i aotNan1.NW_018509326v1 C 0 I 12 s otoGar3.GL873658 2579448 292 + 5252280 tggtgtcccatggccactgtaactaagcacca-----------------------------------------taaact-gggtgactgcaatggaaactg----tccccacagctca-ggggccacaggtgtaagcacagggtcc---agca--gg--tgggtgcccctgagg--ctgagggagaccctgccccacgcctccctcc-tgattcccaggctgcaatcacccctgctgcccctggctaggggccacttcattgcagcctctgg--------------------cccctgtgtctatgtcacctcc--------agacaccagtc--tggatttagtgcccactggggtccaagacgtctccatctgaagt i otoGar3.GL873658 I 1566 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I a score=115939.000000 s hg38.chr2_KI270769v1_alt 97381 16 + 120616 c-cctatttaattacat s panTro5.chr2A 3559908 16 + 111504155 c-cctatttaattacat i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420176 16 + 114371477 c-cctatttaattacat i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 298766 16 + 637652 c-cctctttaattacat i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094191 11 + 81552678 c-cct-----attacat i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3358220 16 + 108979918 c-cctgtttaatcacat i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5070358 16 - 111193037 c-cctgtttaatcacat i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3461579 16 + 3644372 c-cctatttaatcacat i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3418022 16 - 10304083 c-cctatttaatcacat i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3519214 16 - 107702431 c-cctatttaatcacat i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1050046 16 + 1565135 c-cctatttaatcacat i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3412304 16 - 13651311 c-cctgtttaatcacat i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3499833 17 - 108792865 tccctatttcattacat i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3143278 16 - 7082604 t-cctatttcattacat i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 629145 16 + 5243153 t-cctatttcgttacat i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2579740 16 + 5252280 c-cttgtccgaccagat i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I e aotNan1.NW_018509326v1 3371678 12 + 7587287 I a score=888987.000000 s hg38.chr2_KI270769v1_alt 97397 89 + 120616 ctgcaaaga-------ccatttccaaaaaggtcacattccgaggttccgagCAGACATGAACTTTTAGTGGACGTTATTCGAGCCCCTCCACCTCA s panTro5.chr2A 3559924 89 + 111504155 ctgcaaaga-------ccatttccaaaaaggtcacattcccaggttccgagcagacatgaacttttagtggacgttatttgagccCCTCCAtctca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420192 89 + 114371477 ctgcaaaga-------ccatttccagaaaggtcacattcccaggttccgagcagacatgaacttttagtggacgttattcgagccCCTCcacctca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 298782 88 + 637652 ctgcaaaga-------ccatttccaaaaaggtcacattccgaggtt-cgagcagacatgaacttttagtggatgttattcgagccCCTCcacctca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094202 89 + 81552678 ctgcaaaga-------ccatttccaaaaaggtcacattccgaggttccgagcagacatgaacttttagtggacgttattcgagccCCCCCACCTCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3358236 89 + 108979918 ctgcaaaga-------ccatttccaaaaaggtcacattcccaggttccgagcagacatgagcttttagtggacgttattcaagccCCTCcacctca i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5070374 89 - 111193037 ctgcaaaga-------ccatttccaaaaaggtcacattcccaggttccgagCAGACATGAGCTTTTAGTGGACGTTATTCAAGCCCCTCcacctca i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3461595 89 + 3644372 ctgcaaaga-------ccatttccaaaaaggtcacattcccaggttccgagcagacatgagcttttagtggacgttattcaagccCCTCCACCTCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3418038 89 - 10304083 ctgcaaaga-------ccatttccaaaaaggtcacattcccaggttccgagCAGACACGAGCTTTTAGTGGACGTTATTCAAGCCCCTCCACCtca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3519230 89 - 107702431 ctgcaaaga-------ccatttccaaaaaggtcacattcccaggttccgagCAGACATGAGCTTTTAGTGGACGGTACTCAAGCCCCTCcacctca i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1050062 89 + 1565135 ctgcaaaga-------ccatttccaaaaaggtcacattcccaggttccgagcagacacgagcttttagtggacgttattcaagccCCTCcacctca i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3412320 88 - 13651311 ctgcaaaga-------ccatttccaaaaaggccacattcccaggttccgagcagacatgagc-tttagtggatgttattcAAGCCCCTCcacctca i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3499850 89 - 108792865 ctgcagaca-------ccatttccaaaacggtcacattccgaggttctgagcagacgtgaacttttggtggatgttattTAAGACCTTCCATCTCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3143294 89 - 7082604 ctgcagaca-------ccatttccaaaaaagtcacgttccgaggttctgagcagacgtgaacttttggtgggtgttattTGAGACCTTCCAtctca i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 629161 89 + 5243153 ctgcagaca-------ccagttccaaaaaggtcacattctgaggttccgagcagacgtgaacttttggtggaTGTTATCTGAGCCCTTCCATCTCA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3371690 89 + 7587287 ctgcagaca-------ccatttccaaaaaggtcatattccgaggttccgagCAGATGTGAACTTTTGGTGGATGTTATTTGAGACCTTCCATCTCA i aotNan1.NW_018509326v1 I 12 C 0 s otoGar3.GL873658 2579756 90 + 5252280 ctgcacagactctgttccacatccaa-----tcgcatcatgaggctcc-aggagacattcgtgttgggaggacactattgaagccaggacaCCTAC i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91440470 1881 - 120129022 I e dasNov3.JH580157 618557 44877 + 2232271 I a score=3099394.000000 s hg38.chr2_KI270769v1_alt 97486 330 + 120616 CAGACAGGCTCTGGT--------------------------------------GGACtcct----------------------cacctca-------accctgctccaagggtacatgatgtccccctttacagacagggagactgaggcac----agcttgaagaacct-gcccacggccacacagctactgcagcagc--agaactggg-----------------gtGATT---CCATCTGAGCCTTCATCCATGCAGACACCTCCAAGCCCAAGGCATCCACGGAG----------------GGCTCCTCCCTCGTCT--TCTCCACACCCCAAGCTCACAGGGATGTTTCTCTGTGGAGGTGGA-GCAGGCAGTGCTG---CCCTGGGGCCTCTATCCTGGGATCTCTGGGGCCAGCTTCAATGTCATCATGGGTGGCCGC s panTro5.chr2A 3560013 330 + 111504155 cagacaggctctggt--------------------------------------ggactcct----------------------cacctca-------accctgctccaagggtacatgatgtccccctttacagacagggagactgaggcac----agcttgaagaacct-gcccacggccacacagctactgcagcagc--agaactggg-----------------gtGATT---CCATCTGAGCCTTCATCCATGCAGACACCTCCAAGTCCAAGGCATCCACGGAG----------------GGCTCCTCCCTCGTCT--TCTCCACACCCCAAGCTCACAGGGATGTTTCTCTGTGGAGGTGGA-GCAGGCAATGCTG---CCCTGGGGCCTCTATCCTGGGATCTCTGGGGCCAGCTTCAATGTCATGATGGGTGGCCGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420281 330 + 114371477 cagacaggctctggt--------------------------------------ggactcct----------------------cacctca-------accctgctccaagggtacatgatgtccccctttatagacagggagactgaggcac----agcttgaagaacct-gcccacggccacacagctactgcagcagc--agaactggg-----------------gtGATT---CCATCTGAGCCTTCATCCATGCAGACACCTCCAAGCCCAAGGCATCCACGGAG----------------GGCTCCTCCCTCGTCT--TCTCCACACCCCAAGCTCACAGGGATGTTTCTCTGTGGAGGTGGA-GCAGGCAATGCTG---CCCTGGGACCTCTATCCTGGGATCTCTGGGGCCAGCTTCAATGTCATGATGGGTGGCCGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 298870 330 + 637652 cagacaggctctggt--------------------------------------ggactcct----------------------cacctca-------accctgctccaagggtacatgatgtccccctttacagacagggagactgaggcac----agcttgaagaacct-gcccacggccacacagctactgcagcagc--agaactggg-----------------gtGATT---CCATCTGAGCCTTCATCCATGCAGACACCTCCAAGCCCAAGGCATCCACGGAG----------------GGCTCCTCCCTCATCT--TCTCCACACCCCAAGCTCACAGGGATGTTTCTCTGTGGAGGTGGA-GCAGGCAATGCTG---CCCTGGGGCCTCTATCCTGGGATCTCTGGGGCCAGCTTCAATGTCATCATGGGTGGCCGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094291 328 + 81552678 CAGACAGGCTCTGGC--------------------------------------GGCCtcct----------------------cacctca-------cccctcctccaagggtacatcatgtcccccttt--agacagggagaccgaggcac----agcttgaagaacct-gcccacggccacacagctactgcagcagc--agaactggg-----------------gtGATT---CCATCTGCGCCTTCATCCATGCAGACACCTCCAAGCCCAAGGCATCCACAGAG----------------GGCTCTTCCCTCGTCC--TCTCCACACCCCAAGCTCACAGGGATGTCTCTCTGCAGAGGTGGA-GCAGGCAATGCTG---CCCTGGGGCCTCTGTCCTGGGATCTCTGGGGCCAGCTTCGATGTCATGATGGGTGGCCAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3358325 330 + 108979918 cagacaggctctggt--------------------------------------ggactcct----------------------cacctca-------accctgctctgagggtacatgacatccccctttacagacaaggaaactgaggcac----agcttgaagaacct-gcccacagccacacagctactggagcagc--agaactggg-----------------gtgatt---ccatctgagccttcatccatgccgacacctccaagcccagggcATCTACGGAG----------------GGCTCCTCCCTGGTCT--GCTCCACACCCCAAGCTCACAGGGACGTCTCTCTGCGGAGGTGGA-GCAGGCGATGCCG---CCCTGGGGCCTCGGTCCTGGTATCTCTGGGGCCGGCTTCGATGTCATGATAGGTGGCCGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5070463 330 - 111193037 cagacaggctctggt--------------------------------------ggactcct----------------------cacctca-------accctgctctgagggtacatgacatccccctttacagacaaggaaactgaggcac----agcttgaagaacct-gcccacagccacacagctactggagcagc--agaactggg-----------------gtGATT---CCATCTGAGCCTTCATCCATGCCGACACCTCCAAGCCCAGGGCATCTACGGAG----------------GGCTCCTCCCTGGTCT--GCTCCACACCCCAAGCTCACAGGGACGTCTCTCTGCGGAGGTGGA-GCAGGCGATGCCG---CCCTGGGGCCTCGGTCCTGGTATCTCTGGGGCCGGCTTCGATGTCATGATGGGTGGCCGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3461684 330 + 3644372 CAGACAGGCTCTGGT--------------------------------------GGACtcct----------------------cacctca-------accctgctctgagggtacatgatatccccctttacagacaaggaaactgaggcac----agcttgaagaacct-gcccacagccacacagctactggagcagc--agaactggg-----------------gtGATT---CCATCTGAGCCTTCATCCATGCCGACACCTCCAAGCCCAAGGCATCTACGGAG----------------GGCTCCTCCCTGGTCT--GCTCCACACCCCAAGCTCACAGGGACGTCTCTCTGCGGAGGTGGA-GCAGGCGATGCCG---CCCTGGGGCTTCGGTCCTGGTATCTCTGGGGCCGGCTTCGATGTCATGATGGGTGGCCGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3418127 330 - 10304083 cagacaggctctggt--------------------------------------ggactcct----------------------cacctca-------accctgctctgagggtacatgacatccccctttacagacaaggaaactgaggcac----agcttgaagaacct-gcccacagccatacagctactggagcagc--agaactggg-----------------gtGATT---CCATCTGAGCCTTCATCCACGCCGACACCTCCAAGCCCAAGGCATCTACGGAG----------------GGCTCCTCCCTGGTCT--GCTGCACACCCCAAGCTCACAGGGACGTCTCTCTGCGGAGGTGGA-GCGGGCGATGCCG---CCCTGGGGCCTCAGTCCTGGTATCTCTGGGGCCGGCTTCGATGTCATGATGGGTGGCCGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3519319 330 - 107702431 cagacaggctctggt--------------------------------------ggactcct----------------------cacctca-------accctgctctgagggtacatgacatccccctttacagacaaggaaactgaggcac----agcttgaagaacct-gcccacagccacacagctactggagcagc--agaactggg-----------------gtGATT---CCATCTGAGCCTTCATCCATGCCGACACCTCCAAGCCCAAGGCATCTACAGAG----------------GGCTCCTCCCTGGTCT--GCTCCACACCCCAAGCTCACAGGGACGTCTCTCTGCGGAGGTGGA-GCGGGCGATGCCG---CCCTGGGGCCTCGGTCCTGGTATCTCTGGGGCCGGCTTCGATGTCATGATGGGTGGCCGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1050151 330 + 1565135 cagacaggctctggt--------------------------------------ggactcct----------------------cacctca-------accctgctctgagggtacatgacatccccctttacagacaaggaaactgaggcac----agcttgaagaacct-gcccacagccatacagctactggagcagc--agaactggg-----------------gtGATT---CCATCTGAGCCTTCATCCATGCCGACACCTCCAAGCCCAAGGCATCTACGGAG----------------GGCTCCTCCCTGGTCT--GCTCCACACCCCAAGCTCACAGGGACGTCTCTCTGCAGAGGTGGA-GCGGGCGATGCCG---CCCTGGGGCCTCGGTCCTGGTATCTCTGGGGGCGGCTTCGATGTCATGATGGGTGGCCGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3412408 330 - 13651311 cagacaggctctggt--------------------------------------ggactcct----------------------tacctca-------gccgtgctctgagggtacatgatgtccccctttatagacaaggaaactgaggcac----agcttgaagaacct-gcccacagccacacagctactggaatagc--agaactggg-----------------gtGATT---CCATCTGAGCCTTCATCCATGCCGACCCCTCCAAGCCCAAAGCATCTACGGAG----------------GGCTCCTCCCTGGTCT--GCTCCACGCCCCAAGCTCACAGGGACGTTTCTCTGCGGAGGTGGA-GCAAGCGATGCTG---CCCTGGGGCCTCGGTCCTGGTATCTCTGGGGCCGGTTTCGATGTCATGGTGGGTGGCCGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3499939 325 - 108792865 CAGACA------------------------------------------------GACtcct----------------------cacctca-------accctgctctgcggctacatgaaatccccctttacagaaagggaaactgaggcacagagagcttgaagaatct-gcccacggccacacagctactggagtagc--agaactggg-----------------gtGAGTCAGCCATCTGAGGCTTCATCTACACGGACCCCTCTCTGCCCTA-GCATCCATGGAG----------------GGCTCCTCCCCTCATC--TCTCCACACCCCAAGCTCACAGGCACATCTTTCTGCAGAGGTGGA-GCAGGTGATGCTC---TCCCAGGGCCTCTGTCCTGGGATCTCTGGGGCCAGCTTTGAGGTCATGATGGGTGGCCG- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3143383 335 - 7082604 cagacaggctctcat--------------------------------------ggactcct----------------------cacctca-------accctgctctgcggctacatgacatctcgctttacagacagggaaactgaggcacagagagcttgaagaaact-gcccaaggccacacagctgctggagtagc--agaactggg-----------------gtGAGTCAGCCATCTGAGCCTTCATCTACATGGACACCTCCCTGCCCAA-GCATCCATGGAG----------------GGCTCCTTCCTGCATC--TCTCCACACCCCGAGCTCACAGGGACATCTCTCTGCGGAGGCAGA-GCAAGTGATGCTC---TCCTGGGGCCTCTGTCCTGTGACCTCTGGGGCCAGCTTTGAGGTCACGATGGGTGGCCG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 629250 335 + 5243153 CAGACAGGCTctcat--------------------------------------ggactcct----------------------cacctca-------accctgctctgcggctacatgacatcctgctttacagacagggaaactgaggcacagagagcttgaagaaact-gcccagggccacacagctactggagtagc--agaactggg-----------------gtGAGTCAGCCATCTGAGCCTTCATCTACATGGACACCTCCCTGCCCAA-GCATCCATGGAG----------------GGCTCCTTCCCTCATC--TCTCCACACCCCGAGCTCACAGGAACATCTCTCTGCGGAGGAAGA-GCAGGTGACGCTC---TCCCAGGGCCTCTGTCCTGGGACCTCTGGGGCCAGCTTTGAGGTCATGATGGGTGGCCG- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3371779 335 + 7587287 CAGACAGGCTctcat--------------------------------------ggactcct----------------------cacctca-------accctgctctgcggctacatgacatcccactttacagacagggaaactgaggcacagagagcttgaagaaccc-acccaaggccacacagctactggagtagc--agaactggg-----------------gtgagtcagccgtctgAGCCTTCATCTACACGGACACCTCCCTGCCCAA-GCATCCGTGGAG----------------GGCTCTTCCCCTCGTC--TCTCCACACCCCGAGCTCACAGGGACCTCTCTCTGCGGAGGTGGA-GCAGGTGATGCTC---TCCCAGGGCCTCTGTCCTGGGACCTCTGGGGCCACCTTTGAGGTCATGATGGGTGGCCA- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2579846 308 + 5252280 CAGCCGCACTCCAGTAAGGATCAAATAAAACCCTTTAGATCTCACAGGACAAAGGAGACCTCCAGGAGCCAGCATTGTTCAGACAcctcacacacgggccctgctccatgggcatgaggcattcccttctacagatgagaaaacggaggcac-gagagtttagagaatgt-gccagaagtcacgcagttgttggaggggc--agcacggggactcaccacctcggggaatgattctggtatctaagcctccatccactcggacacctccctgccccCTGCACTCAGG---------------------------------------------------------AGGAGCGTTCCATTG----------------------------------------------------CTGGGCCCAG------------------------- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 663434 328 + 2232271 cagatgtgaccttgt--------------------------------------gtaatcct----------------------cccctca-------gctctattc---atttttatt-cattctctttcacggatgagaaaatggaggcac--agaggtttaagtatttagaccaaagtcccccagctattaaagggtcttcaaacaatg-----------------gctcca---gcacccgtgctcttacccactCT--CATCTCTA--CCCA--GTCTCTGTGAGGTCTTTGAGTTTTAAATGCCCCTTTCCTCATCTACGCTCCACCCCTAAAGATAACAGGGAAGTCTCT----GGAAATAAAGGGAGGTCGTGCTGGGTTGCTAGGACCCCTCTTCTAGGAATTCTGGGGGGGG---------------AGGTGTGCAC i dasNov3.JH580157 I 44877 C 0 e mm10.chr12 91440470 1881 - 120129022 I a score=1032003.000000 s hg38.chr2_KI270769v1_alt 97816 103 + 120616 TGGCCCAAAGTCCTGCTcagcagc-------------agcagcagcag-------GACAGG-----------------CCTCTGGAGAGC--ATGCCTCTGTCT--CTGGCCCTGCCAGTGGCGTCCTTGTGTCCTTGGGGACC s panTro5.chr2A 3560343 103 + 111504155 TGGCCCAAAGTCCTGCTTagcagc-------------agcagcagcag-------GACAGG-----------------CCTCTGGAGAGC--ATGCCTCTGTCT--CTGGCCCTGCCAGTGGCGTCCTTGTGTCCTTGGGGACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420611 103 + 114371477 TGGCCCAAAGTCCTGCTTagcagc-------------agcagcagcag-------GACAGG-----------------CCTCTGGAGAGC--ATGCCTCTGTCT--CTGGCCCTGCCAGTGGCGTCCTTGTGTCCTTGGGGACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299200 103 + 637652 TGGCCCAAAGTCCTGCTcagcagc-------------agcagcagcag-------GACAGG-----------------CCTCTGGAGAGC--ATGCCTCTGTCT--CTGGCCTTGCCAGTGGCGTCCTTGTGTCCTTGGGGACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094619 103 + 81552678 TGGCCCGAAGTCCTGCTcagcagc-------------agcagcagcag-------GACAGG-----------------CCTCCGGAGAGC--GTGCCTCTGTCT--CTGGCCCTGCCAGTGGTGTCCTTGTGTCCTTGGGGAGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3358655 100 + 108979918 TGGCCCGAAGTCCTGCT---CAGC-------------AGCAGCAGCAG-------GACAGG-----------------CCTCTGGAGAGC--GTGCCTCTGTCT--CCGGTCCTGCCAGTGACGTCCTTGTGTCCTTGGGGACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5070793 100 - 111193037 TGGCCCGAAGTCCTGCT---CAGC-------------AGCAGCAGCAG-------GACAGG-----------------CCTCTGGAGAGC--GTGCCTCTGTCT--CCGGTCCTGCCAGTGACGTCCTTGTGTCCTTGGGGACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3462014 102 + 3644372 TGGCCTGAAGTCCTGCT---CAGC-------------AGCAGCAGCAG-------GACAGG-----------------CCTCTGGAGAGCGTGTGCCTCTGTCT--CCGGTCCTGCCAGTGACGTCCTTGTGTCCTTGGGGACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3418457 100 - 10304083 TGGCCAGAAGTCCTGCT---CAGC-------------AGCAGCAGCAG-------GACAGG-----------------CCTCTGGAGAGC--GTGCCTCTGTCT--CTGGCCCTGCCAGTGACGTCCTTGTGTCCTTGGGGACC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3519649 100 - 107702431 TGGCCCGAAGTCCTGCT---CAGC-------------AGCAGCAGCAG-------GACAGG-----------------CCTCTGGAGAGC--GTGCCTCTGTCT--CCGGCCCTGCCAGTGACGTCCTTGTGTCCTTGGGGACC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1050481 100 + 1565135 TGGCCCGAAGTCCTGCT---CAGC-------------AGCAGCAGCAG-------GACAGG-----------------CCTCTGGAGAGC--GTGCCTCTGTCT--CTGGCCCTGCCAGTGACGTCCTTGTGTCCTTGGGGACC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3412738 94 - 13651311 TGGCCCGAAGTCCTGCT----------------------CAGCAGCAG-------GGCAGG-----------------CCTCTGGAGAGC--GTGCCTCTGTCT--CTGGCCCTGCCAGTGACATCCTTGTGTCCTTGGGGACC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3500264 94 - 108792865 TGGCCCGAAGTCCTGCT----------------------CAGCAGCAG-------GACAGG-----------------CCTCCGGAGAGG--ATGCCTCTGTTT--CTGCCCCTGCCAGTGGCATCCCTGTGTCCTTGGGGACC i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3143718 100 - 7082604 TGGCCCGAAGTCCTCCT---CAGC-------------AGCAGCAGCAG-------GACAGG-----------------CCTCCGGAGAGG--GTGCCTCTGTTT--CTGCCCCTGCCAGTGGCATCCCTGTGTCCTTGGGGACC i saiBol1.JH378218 C 0 I 1 s cebCap1.NW_016107454v1 629585 100 + 5243153 TGGCCCGAAGTCCTGCT---CAGC-------------AGCAGCAGCAG-------GACAGG-----------------CCTCCGGAGAGG--GTGCCTCTGTTT--CTGCCCCTGCCAGTGGCATCCCTATGTCCTTGGGGACC i cebCap1.NW_016107454v1 C 0 I 7 s aotNan1.NW_018509326v1 3372114 100 + 7587287 TGGCCCAAAGTCCTGCT---CAGC-------------AGCAGCAGCAG-------GACAGG-----------------CCTCCGGAGAGA--GTGCCTCTGTTT--CTGCCCCTGCCAGTGGCATCCCTGTGTCCTTGGGGACC i aotNan1.NW_018509326v1 C 0 I 7 s otoGar3.GL873658 2580154 56 + 5252280 ------------CTGCT---------------------------------------------------------------------------GTGCTGCCACCTGCCTGGGCCTGCT-GTGTCGTCCTTGTGCCCTTGGGGACT i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91442351 101 - 120129022 TGGTCTAAAGTCCTGCT---CTGG-------------GGGAGGGACGGGGTGGAAGACAAG-----------------CCCCTGAAA-----GCATCTCTGGCC--CTGGCCCTGCG---GGCACCCCTGTGCTCTTGGATGAC i mm10.chr12 I 1881 I 3 s dasNov3.JH580157 663762 125 + 2232271 ---TGAAAGGTCCCCCC---CAGCCGAGAGAGTGACTAGAATCTGTGG-------GCCCGGGTCAGAAGGCAGCGGCTCTGCAGGAGAGC--ATGCGTCTCTC---CCGGCTCTGC-AGTCACGTCCTCGTGTCCTTGGGTGAG i dasNov3.JH580157 C 0 C 0 a score=9258.000000 s hg38.chr2_KI270769v1_alt 97919 9 + 120616 ----CCACACACA s panTro5.chr2A 3560446 9 + 111504155 ----CCACACACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420714 9 + 114371477 ----CCACACACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299303 8 + 637652 ----CC-CACACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094722 9 + 81552678 ----CCCCACACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3358755 8 + 108979918 ----CC-CCCACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5070893 8 - 111193037 ----CC-CCCACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3462116 8 + 3644372 ----CC-CCCACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3418557 8 - 10304083 ----CC-CCCACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3519749 8 - 107702431 ----CC-CCCACC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1050581 8 + 1565135 ----CC-CCCACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3412832 8 - 13651311 ----CC-CCCACA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3500359 8 - 108792865 ----CC-CCTCCA i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3143819 8 - 7082604 ----TC-CCTCCA i saiBol1.JH378218 I 1 C 0 s otoGar3.GL873658 2580210 6 + 5252280 -----C-CACCC- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91442455 5 - 120129022 ----CC-TCC--- i mm10.chr12 I 3 C 0 s dasNov3.JH580157 663887 9 + 2232271 GCACTC-CCC--- i dasNov3.JH580157 C 0 C 0 e cebCap1.NW_016107454v1 629685 7 + 5243153 I e aotNan1.NW_018509326v1 3372214 7 + 7587287 I a score=1647533.000000 s hg38.chr2_KI270769v1_alt 97928 143 + 120616 CACATTCTTCTGCAGAGGC---AATCAATAAAGCCGGGG-------------------CACCAAGGAGGCTTCAGGAGTGATTAGCAATGGAGCAGG-CTGGAAAATACGCGGACGCTAGGGCAGATCGTATTGATTCCA-TTGACTTGCCCTTTGCCAGGCTGTTG s panTro5.chr2A 3560455 143 + 111504155 CACATTCTTCTGCAGAGGC---AATCAATAAAGCCGGGG-------------------CACCAAAGAGGCTTCAGGAGTGATTAGCAGTGGAGCAGG-CTGGAAAATACGCGGACGCTAGGGCAGATCGTATTGATTCCA-TTGACTTGCCCTTTGCCAGGCTGTTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420723 143 + 114371477 CACATTCTTCTGCAGAGGC---AATCAATAAAGCCGGGG-------------------CACCAAAGAGGCTTCAGGAGTGATTAGCAGTGGAGCAGG-CTGGAAAATACGCGGACGCTAGAGCAGATCGTATTGATTCCA-TTGACTTGCCCTTTGCCAGGCTGTTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299311 143 + 637652 CACATTCTTCTGCAGAGGC---AATCAATAAAGCCGGGG-------------------CACCAAGGAGGCTTCAGGAGTGATTAGCAATGGAGCAGG-CTGGAAAATACGCGGACGCTAGGGCAGATCGTATTGATTCCA-TTGACTTGCCCTTTGCCAGGCTGTTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094731 143 + 81552678 CACATTCTTCTGCAGAGGC---AATCAATAAAGCCGGGG-------------------CACCAAGGAGGCTCCAGGAGTGATTAGCAATGGAGCAGG-CTGGAAAATACGTGGACGCTAGGGCAGATCATATTGATTCCA-CTGACTTGCCCTTTGCCAGGCTGTTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3358763 143 + 108979918 CACATTCTTCTGCAGAGGC---AATCAGTAAAGCCGGGG-------------------CACCCAGGCAGCTTCAGGAGTGATTAGCAATGGAGCAGG-CTGGAAAACACACGGACGCTAGGGCAGATTGTATTGATTTCA-TTGACTTGCCCTTTGCCAGGCTGTTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5070901 143 - 111193037 CACATTCTTCTGCAGAGGC---AATCAGTAAAGCCGGGG-------------------CACCCAGGCAGCTTCAGGAGTGATTAGCAATGGAGCAGG-CTGGAAAATACACGGACGCTAGGGCAGATTGTATTGATTTCA-TTGACTTGCCCTTTGCCAGGCTGTTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3462124 143 + 3644372 CACATTCTTCTGCAGAGGC---AATCAGTAAAGCCGGGG-------------------CACCCAGGCAGCCTCAGGAGTGATTAGCAATGGAGCAGG-CTGGAAAATACACGGACGCTAGGGCAGATTGTATTGATTTCA-TTGACTTGCCATTTGCCAGGCTGTTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3418565 143 - 10304083 CACATTCTTCTGCAGAGGC---AATCAGTAAAGCCGGGG-------------------CACCCAGGCAGCTTCAGGAGTGATTAGCAATGGAGCAGG-CTGGAAAATACACGGACGCTAGGGCAGATCATATTGATTTCA-TTGACTTGCCCTTTGCCAGGCTGTTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3519757 143 - 107702431 CACATTCTTCTGCAGAGGC---AATCAATAAAGCCGGGG-------------------CACCAAGGCGGCTTCAGGAGTGATTAGCGATGGAGCAGG-CTGGAAAATACACGGACGCTAGGGCAGATCATATTGATTTCA-TTGACTTGCCCTTTGCCAGGCTGTTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1050589 143 + 1565135 CACATTCTTCTGCAGAGGC---AATCAGTAAAGCCGGGG-------------------CACCCAGGCAGCTTCAGGAGTGATTAGCAATGGAGCAGG-CTGGAAAATACACGGACGCTAGGGCAGATCATATTGATTTCA-TTGACTTGCCCTTTGCCAGGCTGTTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3412840 143 - 13651311 CACATTCTTCTGCAGAGGC---AATCAATAAAGCCGGGG-------------------CACCAAGGCGGCTTCAAGAGTGATTAGCAACAGAGCAGG-CTGGAAAATACACGGACGCTAGGGCAGATCGTATTGATGTCA-TTGACTTGCCCTTTGCCAGGCTGTTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3500367 141 - 108792865 --CATTCTTCTTCAGAGGC---AATCAATAAAGCC-GGG-------------------CGCCAAGGAGGCTTGAGGAGTGATTAGCAATGGAGCAGG-CTGGGAAATCCGCAGACGCCAGGGCAGACCGCATTGATTTCATTTGACTTGCCCTTTGCCAGGCTGTTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3143827 134 - 7082604 --CA---TTCTTCAGAGGC---AATCAATAAAGCC-GGG-------------------CGTCAAGGAGCCTTGAGGAGTGATTAGCAATGGAGCAGG-CTGG---ATCCACAGACGCTGGGGCAGACCGTATTGATTCCA-TCGACTTGCCCTCTGCCAGGCTGTCG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 629692 142 + 5243153 CACATTCTTCTTCAGAGGC---AATCAATAAAGCC-GGG-------------------CGCCAAGGAGCCTTGAAGAGTGATTAGCAATGGAGCAGG-CTGGAAAATCCGCAGGCGCTAGGGCAGACCGTATTGATTTCA-TTGACTTGCGCTTTGCCAGGCTGTTG i cebCap1.NW_016107454v1 I 7 I 2 s aotNan1.NW_018509326v1 3372221 139 + 7587287 CACATTCTTCTTCAGAGGC---AATCAATAAAGCC-GGG-------------------CGCCAAGGAGCCTTGAGGAGTGATTAGCAATGGAGCGGA-CTAA---ATCCGCCGACGCTAGGGCAGACCGTATCGATTTCA-TTGACTTGCCCTTTGCCAGGCTGTTG i aotNan1.NW_018509326v1 I 7 C 0 s otoGar3.GL873658 2580216 140 + 5252280 CATGTCCTTCTGCCTGGGC---AATCAATAAAGCC-TGG-------------------CGCCAGAGAGCCATCAGGATTAATTAGCAGGGGAGCAGG-CTGGCAAGTGT-TGGACGCTAAAGCAAATCATATTGAT-CCA-TCGATTTGCCCTTGGCTAGGCCACCA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91442460 141 - 120129022 TTTGTTCTCCTGGAGAAGCAATAATCAATTATGCCAGGG-------------------CGCCTGAGAGCCATCAGGATTAATGAACGACTGGCCAGG-CTGAAAGATGTATAGACAGCAAGGCCAATCGC--TGATTGCA-TCGATCTG---TCTGCCAGACAGGTG i mm10.chr12 C 0 C 0 s dasNov3.JH580157 663896 163 + 2232271 CTCCGTGTCCTGCAGGGGC---AATCAATAATCTTGGGGCGACACAAGCATCCTGCCTCACCAGAGAGCTATAAGGATTAATTAATGATGGGGCAGGCCCGAAAAATATATAGATGTTAAAGCAAATCATATTGATTTCA-TTGATTTGTTCTTTGCCAGGCTGTTA i dasNov3.JH580157 C 0 C 0 a score=7847.000000 s hg38.chr2_KI270769v1_alt 98071 1 + 120616 T s panTro5.chr2A 3560598 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420866 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299454 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094874 1 + 81552678 T i nomLeu3.chr19 C 0 I 3 s rheMac8.chr13 3358906 1 + 108979918 T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5071044 1 - 111193037 T i macFas5.chr13 C 0 I 3 s macNem1.NW_012011978v1 3462267 1 + 3644372 T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3418708 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s colAng1.NW_012118821v1 3412983 1 - 13651311 T i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3500508 1 - 108792865 T i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3143961 1 - 7082604 T i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3372360 1 + 7587287 T i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91442601 1 - 120129022 T i mm10.chr12 C 0 C 0 s dasNov3.JH580157 664059 1 + 2232271 T i dasNov3.JH580157 C 0 C 0 e otoGar3.GL873658 2580356 0 + 5252280 C e cebCap1.NW_016107454v1 629834 2 + 5243153 I e manLeu1.NW_012104432v1 1050732 0 + 1565135 C e chlSab2.chr14 3519900 0 - 107702431 C a score=4166.000000 s hg38.chr2_KI270769v1_alt 98072 2 + 120616 AT s panTro5.chr2A 3560599 2 + 111504155 AT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420867 2 + 114371477 AT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299455 2 + 637652 AT i gorGor5.CYUI01015435v1 C 0 C 0 s calJac3.chr14 3500509 2 - 108792865 GT i calJac3.chr14 C 0 I 3 s saiBol1.JH378218 3143962 2 - 7082604 GT i saiBol1.JH378218 C 0 I 3 s aotNan1.NW_018509326v1 3372361 2 + 7587287 GT i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91442602 2 - 120129022 GT i mm10.chr12 C 0 I 836 s dasNov3.JH580157 664060 2 + 2232271 AT i dasNov3.JH580157 C 0 C 0 e otoGar3.GL873658 2580356 0 + 5252280 C e cebCap1.NW_016107454v1 629834 2 + 5243153 I e colAng1.NW_012118821v1 3412984 0 - 13651311 C e manLeu1.NW_012104432v1 1050732 0 + 1565135 C e chlSab2.chr14 3519900 0 - 107702431 C e cerAty1.NW_012000820v1 3418709 0 - 10304083 C e macNem1.NW_012011978v1 3462268 0 + 3644372 C e macFas5.chr13 5071045 3 - 111193037 I e rheMac8.chr13 3358907 0 + 108979918 C e nomLeu3.chr19 3094875 3 + 81552678 I a score=-7451.000000 s hg38.chr2_KI270769v1_alt 98074 5 + 120616 TTATA s panTro5.chr2A 3560601 5 + 111504155 TTATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420869 5 + 114371477 TTATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299457 5 + 637652 TTATA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3358907 2 + 108979918 --AT- i rheMac8.chr13 C 0 C 0 s macNem1.NW_012011978v1 3462268 2 + 3644372 --AT- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3418709 2 - 10304083 --AT- i cerAty1.NW_012000820v1 C 0 C 0 s colAng1.NW_012118821v1 3412984 2 - 13651311 --AT- i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2580356 4 + 5252280 -TATA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 664062 1 + 2232271 ---C- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e saiBol1.JH378218 3143964 3 - 7082604 I e cebCap1.NW_016107454v1 629834 2 + 5243153 I e aotNan1.NW_018509326v1 3372363 0 + 7587287 C e calJac3.chr14 3500511 3 - 108792865 I e manLeu1.NW_012104432v1 1050732 0 + 1565135 C e chlSab2.chr14 3519900 0 - 107702431 C e macFas5.chr13 5071045 3 - 111193037 I e nomLeu3.chr19 3094875 3 + 81552678 I a score=5348.000000 s hg38.chr2_KI270769v1_alt 98079 2 + 120616 AC s panTro5.chr2A 3560606 2 + 111504155 AC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420874 2 + 114371477 AC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299462 2 + 637652 AC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094878 2 + 81552678 AC i nomLeu3.chr19 I 3 C 0 s macFas5.chr13 5071048 2 - 111193037 AC i macFas5.chr13 I 3 C 0 s otoGar3.GL873658 2580360 2 + 5252280 AC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 664063 2 + 2232271 AC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e saiBol1.JH378218 3143964 3 - 7082604 I e cebCap1.NW_016107454v1 629834 2 + 5243153 I e aotNan1.NW_018509326v1 3372363 0 + 7587287 C e calJac3.chr14 3500511 3 - 108792865 I e colAng1.NW_012118821v1 3412986 0 - 13651311 C e manLeu1.NW_012104432v1 1050732 0 + 1565135 C e chlSab2.chr14 3519900 0 - 107702431 C e cerAty1.NW_012000820v1 3418711 0 - 10304083 C e macNem1.NW_012011978v1 3462270 0 + 3644372 C e rheMac8.chr13 3358909 0 + 108979918 C a score=58936.000000 s hg38.chr2_KI270769v1_alt 98081 22 + 120616 TCAGATGAAATCCTATTTGGAT s panTro5.chr2A 3560608 22 + 111504155 TCAGATGAAATCCTATTTGGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420876 22 + 114371477 TCAGATGAAATCCTATTTGGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299464 22 + 637652 TCAGATGAAATCCTATTTGGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094880 22 + 81552678 TCAGATGAAATCCTATTTGGAT i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5071050 22 - 111193037 TCAGATGAAATCCTATTTGGAT i macFas5.chr13 C 0 C 0 s calJac3.chr14 3500514 22 - 108792865 TCCGATGAAATCCTATTTGGAT i calJac3.chr14 I 3 C 0 s saiBol1.JH378218 3143967 22 - 7082604 TCTGATGAAATCCTATTTGGAT i saiBol1.JH378218 I 3 C 0 s otoGar3.GL873658 2580362 22 + 5252280 CCAGACGAAATTCGGTTTGGAT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 664065 3 + 2232271 TCA------------------- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e cebCap1.NW_016107454v1 629834 2 + 5243153 I e aotNan1.NW_018509326v1 3372363 0 + 7587287 C e colAng1.NW_012118821v1 3412986 0 - 13651311 C e manLeu1.NW_012104432v1 1050732 0 + 1565135 C e chlSab2.chr14 3519900 0 - 107702431 C e cerAty1.NW_012000820v1 3418711 0 - 10304083 C e macNem1.NW_012011978v1 3462270 0 + 3644372 C e rheMac8.chr13 3358909 0 + 108979918 C a score=33797.000000 s hg38.chr2_KI270769v1_alt 98103 18 + 120616 TTTAGAATGGGTGGGTTT s panTro5.chr2A 3560630 18 + 111504155 TTTAGAATGGGTGGGTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420898 18 + 114371477 TTTAGAATGGGTGGGTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299486 10 + 637652 TTTAGAATGG-------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094902 18 + 81552678 TTTAGAATGGTTGGGATT i nomLeu3.chr19 C 0 T 42 s macFas5.chr13 5071072 18 - 111193037 GTTAGAATGGGTGGGTTT i macFas5.chr13 C 0 T 45 s calJac3.chr14 3500536 18 - 108792865 TTTAGAATGGGTGGGTTT i calJac3.chr14 C 0 T 40 s saiBol1.JH378218 3143989 18 - 7082604 TTTAGAATGGGTGGGTTT i saiBol1.JH378218 C 0 T 40 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 664068 0 + 2232271 C e otoGar3.GL873658 2580384 0 + 5252280 C e cebCap1.NW_016107454v1 629834 2 + 5243153 I e aotNan1.NW_018509326v1 3372363 0 + 7587287 C e colAng1.NW_012118821v1 3412986 0 - 13651311 C e manLeu1.NW_012104432v1 1050732 0 + 1565135 C e chlSab2.chr14 3519900 0 - 107702431 C e cerAty1.NW_012000820v1 3418711 0 - 10304083 C e macNem1.NW_012011978v1 3462270 0 + 3644372 C e rheMac8.chr13 3358909 0 + 108979918 C a score=819.000000 s hg38.chr2_KI270769v1_alt 98121 3 + 120616 ATA s panTro5.chr2A 3560648 3 + 111504155 ATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420916 3 + 114371477 ATA i panPan2.chr2A C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e saiBol1.JH378218 3144007 40 - 7082604 T e dasNov3.JH580157 664068 0 + 2232271 C e otoGar3.GL873658 2580384 0 + 5252280 C e cebCap1.NW_016107454v1 629834 2 + 5243153 I e aotNan1.NW_018509326v1 3372363 0 + 7587287 C e calJac3.chr14 3500554 40 - 108792865 T e colAng1.NW_012118821v1 3412986 0 - 13651311 C e manLeu1.NW_012104432v1 1050732 0 + 1565135 C e chlSab2.chr14 3519900 0 - 107702431 C e cerAty1.NW_012000820v1 3418711 0 - 10304083 C e macNem1.NW_012011978v1 3462270 0 + 3644372 C e macFas5.chr13 5071090 45 - 111193037 T e rheMac8.chr13 3358909 0 + 108979918 C e nomLeu3.chr19 3094920 42 + 81552678 T e gorGor5.CYUI01015435v1 299496 0 + 637652 C a score=1146.000000 s hg38.chr2_KI270769v1_alt 98124 2 + 120616 AC s panTro5.chr2A 3560651 2 + 111504155 AC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420919 2 + 114371477 AC i panPan2.chr2A C 0 C 0 s nomLeu3.chr19 3094878 2 + 81552678 AC i nomLeu3.chr19 T 42 C 0 e mm10.chr12 91442604 836 - 120129022 I e saiBol1.JH378218 3144007 40 - 7082604 T e dasNov3.JH580157 664068 0 + 2232271 C e otoGar3.GL873658 2580384 0 + 5252280 C e cebCap1.NW_016107454v1 629834 2 + 5243153 I e aotNan1.NW_018509326v1 3372363 0 + 7587287 C e calJac3.chr14 3500554 40 - 108792865 T e colAng1.NW_012118821v1 3412986 0 - 13651311 C e manLeu1.NW_012104432v1 1050732 0 + 1565135 C e chlSab2.chr14 3519900 0 - 107702431 C e cerAty1.NW_012000820v1 3418711 0 - 10304083 C e macNem1.NW_012011978v1 3462270 0 + 3644372 C e macFas5.chr13 5071090 45 - 111193037 T e rheMac8.chr13 3358909 0 + 108979918 C e gorGor5.CYUI01015435v1 299496 0 + 637652 C a score=44434.000000 s hg38.chr2_KI270769v1_alt 98126 40 + 120616 TCAGATGAAATCCTATTTGGATTTTAGAATGGGTGGGTTT s panTro5.chr2A 3560653 40 + 111504155 TCAGATGAAATCCTATTTGGATTTTAGAATGGATGGGTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420921 40 + 114371477 TCAGATGAAATCCTATTTGGATTTTAGAATGGATGGGTTT i panPan2.chr2A C 0 C 0 s nomLeu3.chr19 3094880 40 + 81552678 TCAGATGAAATCCTATTTGGATTTTAGAATGGTTGGGATT i nomLeu3.chr19 C 0 T 45 s chlSab2.chr14 3519900 1 - 107702431 ------------T--------------------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1050732 1 + 1565135 ------------C--------------------------- i manLeu1.NW_012104432v1 C 0 C 0 s calJac3.chr14 3500514 40 - 108792865 TCCGATGAAATCCTATTTGGATTTTAGAATGGGTGGGTTT i calJac3.chr14 T 40 T 43 s saiBol1.JH378218 3143967 40 - 7082604 TCTGATGAAATCCTATTTGGATTTTAGAATGGGTGGGTTT i saiBol1.JH378218 T 40 T 43 s dasNov3.JH580157 664068 38 + 2232271 --AGATGAAATTCTACTTGGATTTTAGAATGGCTGATTTC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e otoGar3.GL873658 2580384 0 + 5252280 C e cebCap1.NW_016107454v1 629834 2 + 5243153 I e aotNan1.NW_018509326v1 3372363 0 + 7587287 C e colAng1.NW_012118821v1 3412986 0 - 13651311 C e cerAty1.NW_012000820v1 3418711 0 - 10304083 C e macNem1.NW_012011978v1 3462270 0 + 3644372 C e macFas5.chr13 5071090 45 - 111193037 T e rheMac8.chr13 3358909 0 + 108979918 C e gorGor5.CYUI01015435v1 299496 0 + 637652 C a score=910.000000 s hg38.chr2_KI270769v1_alt 98166 1 + 120616 A s nomLeu3.chr19 3094875 1 + 81552678 A i nomLeu3.chr19 T 45 C 0 s macFas5.chr13 5071045 1 - 111193037 A i macFas5.chr13 T 45 C 0 s chlSab2.chr14 3519901 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1050733 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e saiBol1.JH378218 3144007 43 - 7082604 T e dasNov3.JH580157 664106 0 + 2232271 C e otoGar3.GL873658 2580384 0 + 5252280 C e cebCap1.NW_016107454v1 629834 2 + 5243153 I e aotNan1.NW_018509326v1 3372363 0 + 7587287 C e calJac3.chr14 3500554 43 - 108792865 T e colAng1.NW_012118821v1 3412986 0 - 13651311 C e cerAty1.NW_012000820v1 3418711 0 - 10304083 C e macNem1.NW_012011978v1 3462270 0 + 3644372 C e rheMac8.chr13 3358909 0 + 108979918 C e gorGor5.CYUI01015435v1 299496 0 + 637652 C e panPan2.chr2A 3420961 0 + 114371477 C e panTro5.chr2A 3560693 0 + 111504155 C a score=340.000000 s hg38.chr2_KI270769v1_alt 98167 1 + 120616 T s nomLeu3.chr19 3094876 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5071046 1 - 111193037 T i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3519902 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1050734 1 + 1565135 T i manLeu1.NW_012104432v1 C 0 C 0 s cebCap1.NW_016107454v1 629836 1 + 5243153 T i cebCap1.NW_016107454v1 I 2 C 0 e mm10.chr12 91442604 836 - 120129022 I e saiBol1.JH378218 3144007 43 - 7082604 T e dasNov3.JH580157 664106 0 + 2232271 C e otoGar3.GL873658 2580384 0 + 5252280 C e aotNan1.NW_018509326v1 3372363 0 + 7587287 C e calJac3.chr14 3500554 43 - 108792865 T e colAng1.NW_012118821v1 3412986 0 - 13651311 C e cerAty1.NW_012000820v1 3418711 0 - 10304083 C e macNem1.NW_012011978v1 3462270 0 + 3644372 C e rheMac8.chr13 3358909 0 + 108979918 C e gorGor5.CYUI01015435v1 299496 0 + 637652 C e panPan2.chr2A 3420961 0 + 114371477 C e panTro5.chr2A 3560693 0 + 111504155 C a score=254779.000000 s hg38.chr2_KI270769v1_alt 98168 39 + 120616 AACTCAGATGAAATCCTATTTGGATTTTAGAATGGGTGG s gorGor5.CYUI01015435v1 299496 4 + 637652 -----------------------------------GTGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094877 39 + 81552678 AACTCAGATGAAATCCTATTTGGATTTTAGAATGGTTGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3358909 39 + 108979918 AACTCAGATGAAATCCTATTTGGATGTTAGAATGGGTGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5071047 39 - 111193037 AACTCAGATGAAATCCTATTTGGATGTTAGAATGGGTGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3462270 39 + 3644372 AACTCAGATGAAATCCTATTTGGATGTTAGAATGGGTGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3418711 39 - 10304083 AACTCAGATGAAATCCTATTTGGATTTTAGAATGGGTGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3519903 39 - 107702431 AACTCAGATGAAATCCTATTTGGATTTTAGAATGGGTGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1050735 39 + 1565135 AACTCAGATGAAATCCTATTTGGATTTTAGAATGGGTGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3412986 39 - 13651311 AACTCAGATGAAATCCTACTTGGATTTTAGAATGGGTGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3500511 39 - 108792865 AACTCCGATGAAATCCTATTTGGATTTTAGAATGGGTGG i calJac3.chr14 T 43 C 0 s saiBol1.JH378218 3143964 39 - 7082604 AACTCTGATGAAATCCTATTTGGATTTTAGAATGGGTGG i saiBol1.JH378218 T 43 C 0 s cebCap1.NW_016107454v1 629837 39 + 5243153 AACTCCGATGAAATCCTATCTGGATTTTAGAATGGGTGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3372363 39 + 7587287 AACTCCGATGAAAGCCTATCTGGATTTTAGAATGGGTGG i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 664106 0 + 2232271 C e otoGar3.GL873658 2580384 0 + 5252280 C e panPan2.chr2A 3420961 0 + 114371477 C e panTro5.chr2A 3560693 0 + 111504155 C a score=818422.000000 s hg38.chr2_KI270769v1_alt 98207 76 + 120616 GTTTTTTTGAACAGTTGGTGCAAAATAAACACAAGCATTTTTAACATGGACAATGAAACACATTAAACTATAATAA s panTro5.chr2A 3560693 72 + 111504155 ----TTTTGAACAGTTGGTGCAAAATAAACACAAGCATTTTTAACATGGACAATGAAACACATTAAACTATAATAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3420961 72 + 114371477 ----TTTTGAACAGTTGGTGCAAAATAAACACAAGCATTTTTAACATGGACAATGAAACACATTAAACTATAATAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299500 76 + 637652 GTTTTTTTGAACAGTTGGTGCAAAATAAACACAAGCATTTTTAACATGGACAATGAAACACATTAAACTATAATAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094916 76 + 81552678 GATTTTTTGAACCGTTGGTGCAAAATAAACACAAGCATTTTTAACATGGACAAGGAAACACATTAAACTATAATAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3358948 76 + 108979918 GTTTTTTTGAACAGTTGGTGCAAAATAAACACAAGCATTTTTAACATGGACAATGAAAGACATTAAACTATAATAA i rheMac8.chr13 C 0 I 33 s macFas5.chr13 5071086 76 - 111193037 GTTTTTTTGAACAGTTGGTGCAAAATAAACACAAGCATTTTTAACATGGACAATGAAAGACATTAAACTATAATAA i macFas5.chr13 C 0 I 33 s macNem1.NW_012011978v1 3462309 76 + 3644372 GTTTTTTTGAACAGTTGGTACAAAATAAACACAAGCATTTTTAACATGGACAATGAAAGACATTAAACTATAATAA i macNem1.NW_012011978v1 C 0 I 33 s cerAty1.NW_012000820v1 3418750 76 - 10304083 GTTTTTTTGAACAGTTGGTGCAAAATAAACACAAGCATTTTTAACATGGACAATGAAAGACATTAAACTATAATAA i cerAty1.NW_012000820v1 C 0 I 33 s chlSab2.chr14 3519942 76 - 107702431 GGTTTTTTGAACAGTTGGTGCAAAATAAACACAAGCATTTTTAACATGGACAATGAAAGACATTAAACTATAATAA i chlSab2.chr14 C 0 I 36 s manLeu1.NW_012104432v1 1050774 76 + 1565135 GTTTTTTTGAACAGTTGGTGCAAAATAAACACAAGCATTTTTAACATGGACAATGAAAGACATTAAACTATAATAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3413025 76 - 13651311 GTTTTTTTGAACAGTTGGTGCAAAATAAACACAAGCATTTTTAACATGGACAGTGAAAGACATTAAACTATAATAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3500550 76 - 108792865 GTTTTTTCAAACAGTTGGTGCAAACTAAACGCAAGCATTTTTAACATGGAAAATGAAAAACATTGAACTGTAATAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3144003 76 - 7082604 GTTTTTCTGAACAGTTGGTGCAAACTAAACACGAGCATTTTTAACATGGAAAATGAAAAACATTAAACCGTAATAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 629876 76 + 5243153 GTTTTTTTGAACAGTTGGTGCAAACTAAACACAAGCATTTTTAACATGGAAAATGAAAAATATTAAACTGTAATAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3372402 76 + 7587287 GTTTTTTTGAACAGTTGGTGCAAACTAAACACAAGCATTTTTAACATGGAAAATGAAAAACATGAAACTGTAATAA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2580384 68 + 5252280 ---GTTTTTAAAGGTTGGTGCAAAATAAACACAC-CACCCGTAATAGGGA-GGTAAAAGACCTCAGAGTGTCA--- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 664106 59 + 2232271 -TTTTTTTTTAAGGTTTGTGCAAAATAAAATCAAGCATTTTAAACACAGAAAATAAAACA---------------- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I a score=29436.000000 s hg38.chr2_KI270769v1_alt 98283 7 + 120616 TAAAGGC s panTro5.chr2A 3560765 7 + 111504155 TAAAGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3421033 7 + 114371477 TAAAGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299576 7 + 637652 TACAGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094992 3 + 81552678 TAA---- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3359057 7 + 108979918 TAAAGGC i rheMac8.chr13 I 33 C 0 s macFas5.chr13 5071195 7 - 111193037 TAAAGGC i macFas5.chr13 I 33 C 0 s macNem1.NW_012011978v1 3462418 7 + 3644372 TAAAGGC i macNem1.NW_012011978v1 I 33 C 0 s cerAty1.NW_012000820v1 3418859 3 - 10304083 TAA---- i cerAty1.NW_012000820v1 I 33 C 0 s manLeu1.NW_012104432v1 1050850 4 + 1565135 ---AGGC i manLeu1.NW_012104432v1 C 0 I 32 s colAng1.NW_012118821v1 3413101 4 - 13651311 ---AGGC i colAng1.NW_012118821v1 C 0 I 32 s calJac3.chr14 3500626 3 - 108792865 TAA---- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3144079 7 - 7082604 TAAAGGC i saiBol1.JH378218 C 0 I 4 s cebCap1.NW_016107454v1 629952 7 + 5243153 CAAAGGC i cebCap1.NW_016107454v1 C 0 I 4 s aotNan1.NW_018509326v1 3372478 7 + 7587287 TAAAGGC i aotNan1.NW_018509326v1 C 0 I 4 s otoGar3.GL873658 2580452 7 + 5252280 CAAGGGC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 664165 7 + 2232271 TAATGGC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e chlSab2.chr14 3520018 36 - 107702431 I a score=495271.000000 s hg38.chr2_KI270769v1_alt 98290 57 + 120616 AGGC-AGGCAAGCACGTCCATGGGAAAGTGGTTTCAGTTG---AAAAGTAAGCTCCACCCC s panTro5.chr2A 3560772 57 + 111504155 AGGC-AGGCAAGCACGTCCATGGGAAAGTGGTTTCAGTCG---AAAAGTAAGCTCCATACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3421040 57 + 114371477 AGGC-AGGCAAGCACGTCCATGGGAAAGTGGTTTCAGTCG---AAAAGTAAGCTCCATCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299583 57 + 637652 AGGC-AGGCAAGCACGTCCATGGGAAAGTGGTTTCAGTCG---AAAAGTAAGCTCCACCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3094995 56 + 81552678 AGGC-AGGCAAGCACGTCCCGGGGAGGGTGGTTTCAGTCG----AAAGCATGCTCCACCCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3359064 57 + 108979918 AGGC-AGGCAGGCACGTCCCGGGGAGAGTGGCTTCCGTCG---AAAAGCAAGCTCCACCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5071202 57 - 111193037 AGGC-AGGCAGGCACGTCCCGGGGAGAGTGGCTTCCATCG---AAAAGCAAGCTCCACCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3462425 57 + 3644372 AGGC-AGGCAGGCACGTCCCGGGGAGAGTGGCTTCCGTCG---AAAAGCAAGCTCCACCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3418862 57 - 10304083 AGGC-AGGCAGGCACGTCCCGGGGAGAGTGGCTTCCGTCG---AAAAGCAAGCTCCACCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3520054 57 - 107702431 AGGC-AGGCAGGCACGTCCCGGGGAGAGTGGCTTCCATCG---AAAAGCAAGCTCCACCCC i chlSab2.chr14 I 36 C 0 s manLeu1.NW_012104432v1 1050886 57 + 1565135 AGGC-AGGCAGGCACGTCCCGGGGAGAGTGGCTTCCGTCG---AAAAGCAAGCTCCACCCC i manLeu1.NW_012104432v1 I 32 C 0 s colAng1.NW_012118821v1 3413137 55 - 13651311 AGGC-AGGCAGGCACGTCCCGGG--GAGTGGCTTCCATCG---AAAAGCAAGCTCCACCCC i colAng1.NW_012118821v1 I 32 C 0 s calJac3.chr14 3500629 57 - 108792865 AGGC-AGGCGGGCATGCTGTGGGGAGAGAGGCCTCTGTGG---AAAAGCAAGCTCCGCCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3144090 57 - 7082604 AGGC-AGGCGAGCATGTCGTGGGGAGTGTGGCTTCAGCGG---AAAAGCAAGCTCCGCCCC i saiBol1.JH378218 I 4 C 0 s cebCap1.NW_016107454v1 629963 57 + 5243153 AGGC-AGGTGAGAATGTTGTGGGGAGAGTGGCTTCAGCGG---AAAAGCAAGCTCTGCCCC i cebCap1.NW_016107454v1 I 4 C 0 s aotNan1.NW_018509326v1 3372489 57 + 7587287 AGGC-AGGCGAGCATGTCGTGGGGAGAGTGGCTTCAGCGG---AAAAGCAAGCTCCGCCCC i aotNan1.NW_018509326v1 I 4 C 0 s otoGar3.GL873658 2580459 36 + 5252280 ---------------------AGAGGAGGGGTCTCCATGG---GGCA-CACACCCCACCCC i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 664172 51 + 2232271 AGACAAGGCAA----------AGGAGAGGGGTCCTGGTGGATAAAAGGGAAGGCCCACTCC i dasNov3.JH580157 C 0 I 2126 e mm10.chr12 91442604 836 - 120129022 I a score=880091.000000 s hg38.chr2_KI270769v1_alt 98347 98 + 120616 AGAACTGTCAC-ACCTGCACTGCT-CACGCCAGGGACAGACCGTGATAGGAGCACAGCCTCCTGTCCTccagcccccgcccagcccagcttccccagccc s panTro5.chr2A 3560829 98 + 111504155 AGAACTGTCAC-ACCTGCGCTGCT-CACGCCAGGGACAGACCGTGATGGGAGCACAGCCTCCTGTCCTccagcccccgcccagcccagctcccccagccc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3421097 98 + 114371477 AGAACTGTCAC-ACCTGCGCTGCT-CACGCCAGGGACAGACCGTGATGGGAGCACAGCCTCCTGTCCTccagcccccgcccagcccagctcccccagccc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299640 98 + 637652 AGAACTGTCAC-ACCTGCGCTGCT-CACGCCAGGGACAGACCGTGATGGGAGCACAGCCTCCTGTCCTccagcccccgcccagcccagctcccccagccc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3095051 98 + 81552678 AGAACTGTCAC-ACCTGCGCTGCT-CACGCCAGGGACAGACCGTGATGGGAGCACAGCCTCCTGCCCTccagcccccgcccagcccagctcccccagccc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3359121 99 + 108979918 AGAACTGTCATGACCAGCACTGCT-CACGCCAGGGACAGACCGTGATGGGAGCACAGCCTCCTGCTCTGCAGCCCCCACCCAGCCCAACTCCCCCAGCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5071259 99 - 111193037 AGAACTGTCATGACCAGCGCTGCT-CACGCCAGGGACAGACCGTGATGGGAGCACAGCCTCCTGCTCTGCAGCCCCCGCCCAGCCCAACTCCCCCAGCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3462482 99 + 3644372 AGAACTGTCATGACCAGCGCTGCT-CACGCCAGGGACAGACCGTGATGGGAGCACAGCCTCCTGCTCTGCAGCCCCCGCCCAGCCCAACTCCCCCAGCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3418919 99 - 10304083 AGAACTGTCATGACCAGCGCTGCT-CACGCCAGGGAGAGACCGTGATGGGAGCACAGCCTcctgccctgcagcccccgcccagcccagctcccccagccc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3520111 99 - 107702431 AGAACTGTCATGACCAGCGCTGCT-CACGCCAGGGACAGACCGTGATGGGAGCATAGCCTTCTGCCCTGCAGCCCCCACCCAGCCCAGCTCCCCCAGCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1050943 99 + 1565135 AGAACTGTCATGACCAGCGCTGCT-CACGCCAGGGACAGACCGTGATGGGAGCACAGCCTCCTGCCCTGCAGCCCCCGCCCAGTCCAGCTCCCCCAGCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3413192 99 - 13651311 AGAACTGTCATGACCAGCGCTGCT-CACGCCAGGGACAGACGGTGATGGGAGCACAGCCTcctgccctgcagcccccgcccagcccagctcccccagccc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3500686 96 - 108792865 AGAACCGCCGCGACCAGCTCTGCT-CACACCAGGGACAGACCTCGGTGGGAGCACAGTCTCCTGCCCGCCAGCAC---CCCAGCCCAGCCCCCCCAGCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3144147 95 - 7082604 AGAACCACTGCGACCAGCTCTGCT-CACGCCAGGGACAGACCGCGGTGGGAGCACAGTCTCCTG-CTGCCAGCAC---CCCAGCCCAGCTCCTCCAGCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 630020 96 + 5243153 AGAACCGCCGCGCCCAGCTCTGCT-CACGCCAGGGACAGACCGCGGTGGGAGCACGGTCTcctgcccaccagcac---cccagcccagcacccccagccc i cebCap1.NW_016107454v1 C 0 I 312 s aotNan1.NW_018509326v1 3372546 95 + 7587287 AGAACCACCGCGACCAGCTCTGCT-CACGCCAGGGACAGACCGCGGTGGGAGCACGGTCCCCTGCCCGCCAGCAC---CCCAGCGCAGCTCC-CCAGCCC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2580495 50 + 5252280 ACCACCCTCACCACCA-TGCTGTTCCACACCAGA---AAAC-------------------------------------CCCACCCCAGATC--------- i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 664223 2126 + 2232271 I a score=5843.000000 s hg38.chr2_KI270769v1_alt 98445 2 + 120616 -tg s panTro5.chr2A 3560927 2 + 111504155 -tg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3421195 2 + 114371477 -tg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299738 2 + 637652 -cg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3095149 2 + 81552678 -cg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3359220 2 + 108979918 -CG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5071358 2 - 111193037 -CG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3462581 2 + 3644372 -CG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3419018 2 - 10304083 -cg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3520210 2 - 107702431 -CA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1051042 2 + 1565135 -CG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3413291 2 - 13651311 -cg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3500782 2 - 108792865 -CG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3144242 2 - 7082604 -CA i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3372641 2 + 7587287 -CG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2580545 2 + 5252280 AT- i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 664223 2126 + 2232271 I e cebCap1.NW_016107454v1 630116 312 + 5243153 I a score=751409.000000 s hg38.chr2_KI270769v1_alt 98447 76 + 120616 cTGACCTGGGG-GCTGTCTTCATGCCTGGATGCTTCTAGTGCCCT-GCCCCCGCCACGTTT-AAGAGAATGTTTTGAAA s panTro5.chr2A 3560929 76 + 111504155 cTGACCTGGGG-GCTGTCTTCATGCCTGGATGCTTCTAGTGCCCT-GCCCCCGCCACGTTT-AAGAGAATGTTTTGAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3421197 76 + 114371477 cTGACCTGGGG-GCTGTCTTCATGCCTGGATGCTTCTAGTGCCCT-GCCCCCGCCACGTTT-AAGAGAATGTTTTGAAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299740 76 + 637652 cTGACCTGGGG-GCTGTCTTCATGCCTGGATGCTTCTAGTGCCCT-GCCCCCGCCACGTTT-AAGAGAATGTTTTGAAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3095151 76 + 81552678 cTGACCTGGGG-GCTGTCTTCATGCCCGGATGCTTCTAGTGCCCT-GCACCCGCCGCAGTT-AAGAGAATATTTTGAAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3359222 76 + 108979918 CTGACCTGGGG-GCTGTCTTCATGCCTGGATGCTTCTAGTGCCCT-GCCCCCACCGCATTT-AAGAGATCGTGTTGAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5071360 76 - 111193037 CTGACCTGGGG-GCTGTCTTCATGCCTGGATGCTTCTAGTGCCCT-GCCCCCACCGCATTT-AAGTGATCGTGTTGAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3462583 76 + 3644372 CTGACCTGGGG-GCTGTCTTCATGCCTGGATGCTTCTAGTGCCCT-GCCCCCACCGCATTT-AAGAGATCATGTTGAAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3419020 76 - 10304083 cTGACCTGGGG-GCTGTCTTCATGCCTGGATGCTTCTGGTGCCCT-GCCCCCACCGCATTT-AAGAGATCATGTTGAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3520212 76 - 107702431 CTGGCCTGGGG-GCTGTCTTCATGCCTGGATGCCTCTAGTGCCCT-GCCCCCGCCGCATTT-AAGAGAACGTGTTGAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1051044 58 + 1565135 CTGACCTGGGG-GCTG------------------TCTGGTGCCCT-GCCCCCACCGCATTT-AAGAGATCGTGTTGAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3413293 76 - 13651311 cTGACCTGGGG-GCTGTCTTCATGCCTGGATGCTTCTAGTGCCCT-GTCCCCACCGCATTT-AAGAGAACGTGTCGAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3500784 76 - 108792865 CTGACCTGGGC-ACTGTCTTCATGCCTGGATGCTTCCAGTGCGCT-GCCCCCACTGCATTT-AAGAGAACATTTTGAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3144244 76 - 7082604 CTGACCTGGGC-GCTGTCTTCATGCCTGGATGCTTCCAGTGCGCT-GCCCCCACTGCATTT-AAGAGAACGTTTTGAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 630428 76 + 5243153 CTGACCTGGGC-GCCATCTTCATGCCTGGATGCTTCCAGTGCACT-GCCCCCACTGCATTT-AAGAGAACATTTTTAAA i cebCap1.NW_016107454v1 I 312 C 0 s aotNan1.NW_018509326v1 3372643 76 + 7587287 GTGACCTGGGC-GCTGTCTTCATGCCTGGATGCTTCCAGTGCGCT-GCCCCTGCTGCATTT-AAGAGAACGTTTTGAAA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2580547 79 + 5252280 CTGGCCTGGGGTGCTATCTTCCTGCTGAGAAGCTCCCAGTGCCTTGGCCACCACTGTGTTTGAAAAAAATGTTTTAAAA i otoGar3.GL873658 C 0 I 114 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 664223 2126 + 2232271 I a score=1083075.000000 s hg38.chr2_KI270769v1_alt 98523 121 + 120616 AATAATCACTTCCCAAGGCAGAAAACAGAGAGCAAAACACAGAGCGATTCAGAAGAG------CCGCCTGCT-CAGGGGTGCCCCGGATGTTATCTGCAACCTGGCA-CGGCCCGACTGCAGGCCT-CAG-- s panTro5.chr2A 3561005 121 + 111504155 AATAATCACTTCCCAAGGCAGAAAACAGAGAGCAAAACACTGACCGATTCAGAAGAG------CCGCCTGCT-CAGGGGTGCCCCGGATGTTATCTGCAACCTGGCA-CGGCCCGACTGCAGGCCT-CAG-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3421273 121 + 114371477 AATAATCACTTCCCAAGGCAGAAAACAGAGAGCAAAACACGGACCGATTCAGAAGAG------CCACCTGCT-CAGGGGTGCCCCGGATGTTATCTGCAACCTGGCA-TGGCCCGACTGCAGGCCT-CAG-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299816 122 + 637652 AATTATCACTTCCCAAGGCAGAAAACAGAGAACAAAACACGGAGCGATTCAGAAGAG------CCGCCTGCT-CAGGGGTGCCCCGGATGTTATCTGCAACCTGGCACCGGCCCGACTGCAGGCCT-CAG-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3095227 121 + 81552678 AGTAATCACTTCCCAAGGCAGAAAACACAGAGCAGAACACGGAGCGATGCAGAAGAG------CCGCCTGCT-CCGGGGTGCCCCGGATGTTATCTGCAACCTGGCA-CAGCCCAACTGCAGGCCT-CAG-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3359298 120 + 108979918 AATAATCACTTCCCAAGGCAGAAAACAGAGAGCAGAACAC-GAACGATTCAGAAGAG------CCGCCTGCT-CAGGGGTGCCCCGGATGTTCTCTGCAAACTGGCA-CGGCCTGACTGCAGGCCT-CAG-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5071436 120 - 111193037 AATAATCACTTCCCAAGGCAGAAAACAGAGAGCAGAACAC-GAACGATTCAGAAGAG------CCGCCTGCT-CAGGGGTGCCCCGGATGTTCTCTGCAAACTGGCA-CGGCCTGACTGCAGGCCT-CAG-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3462659 119 + 3644372 AATAATCACTTCCCAAGGCAG-AAACAGAGAGCAGAACAC-GAACGATTCAGAAGAG------CCGCCTGCT-CAGGGGTGCCCCGGATGTTCTCTGCAAACTGGCA-CGGCCTGACTGCAGGCCT-CAG-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3419096 121 - 10304083 AATAATCACTTCCCAAGTCAGAAAACAGACAGCAGAGCACGGAACGATTCAGAAGAG------CCGCCTGCT-CAGCGGTGCCCCGGATGTTCTCTGCAAACTGGCA-TGGCCTGACTGCAGGCCT-CGG-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3520288 121 - 107702431 AATAATCACTTCCCAAGGCAGAAAACAGAGAGCAGAACACGGAACGATTCAGAAGAG------CCGCCTGCT-CAGGGGCGCCCCAGATGTTCTCTGCAAACTGGCA-CGGCCTGACTGCAGGCCT-CAG-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1051102 121 + 1565135 AATAATCACTTCCCaaggcagaaaacagagagcagaagacggaacgattcagaagaG------CCGCCTGCT-CAGCAGTGCCCCGGATGTTCTCTGCAAACTGGCA-CGGCCTGACTGCAGGCCT-CAG-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3413369 121 - 13651311 AATAATCACTTCCCAAGGCAGAAAACAGAGAGCAGAACACGGAACGATTCAGAAGAG------CCGCCTACG-CAGGGGTGCCCCAGATGTTCTCTGCAAACTGGCA-CGGCCTGACTGCAGGCCT-CAG-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3500860 118 - 108792865 AATCATCACTTTCCAAAGCAGGAAAC----AGCAAAACATGGAGCGACTCAGGAGAA------GCACCTGCTTCCAGGGTGCCCCGGATGTTCTCTGCAACCTGCCA-CGGCTGGACTGCAGGCCT-CAG-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3144320 118 - 7082604 AATCATCACTTTCCAAGGCAGGAAAC----AGCAGAACATGGAATGATTCAGGAGCA------GCACCTGCTCCCAGGGTGTCCCAGATGTTCTCTGCAACCTGCCA-TGGCTGGACTGCAGGCCT-CAG-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 630504 118 + 5243153 AATCATCACTTTCCAAGGCAGGAAAC----AGCAGAACACGGAGCAATTCAGGAGTG------GCACCTGCTCCCAGGGTGCCCCAGACGTTCTCTGCAAACTGCCA-TGGCTGGACTGCAGGCCT-CAG-- i cebCap1.NW_016107454v1 C 0 I 14 s aotNan1.NW_018509326v1 3372719 118 + 7587287 AATAATCACTTTCCAAGGCAGGAAAC----AGCAGAACACGGAGCAATTCAGGAGAG------GCGCCTGCTCCCAGGGTGCCCCAGACGTTCTCTGCAACCTGCCA-TGGCTGGACTGCAGGCCT-CAG-- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2580740 115 + 5252280 AATAATGGCTTTCTAAGGGAGAAACCAGAGAAGAGA-----GAGCAATTGAGAATAGGTGCTCCCTCCCACC-CAGGCAGGGGCCTGA------CTGCAGCCTGGTG-TAGCGG----GCAGCCTTGCAGAA i otoGar3.GL873658 I 114 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 664223 2126 + 2232271 I a score=335953.000000 s hg38.chr2_KI270769v1_alt 98644 52 + 120616 CCCTGTGCCCTGGCCCCACCTGAGCAATTCCTCTGCCCTCTTCAGGGCCCAG s panTro5.chr2A 3561126 52 + 111504155 CCCTGTGCCCTGGCCCCACCTGAGCAATTCCTCTGCCCTCTTCAGGGCCCAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3421394 52 + 114371477 CCCTGTGCCCTGGCCCCACCTGAGCAATTCCTCTGCCCTCTTCAGGGCCCAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299938 52 + 637652 CCCTGTGCCCTGGCCCCACCTGAGCAATTCCTCTGCCCTCTTCAGGGCCCAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3095348 52 + 81552678 CCCTGTGCCCTGGCCCCACCTGAGCAATTCCTCTGCCTTCTTCAGGGCCCAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3359418 52 + 108979918 CCCTGTGCCCTGGCCCCACCTGAGCAATTCCTCTGCCCTCTTCAGGGCCCAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5071556 52 - 111193037 CCCTGTGCCCTGGCCCCACCTGAGCAATTCCTCTGCCCTCTTCAGGGCCCAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3462778 52 + 3644372 CCCTGTGCCCTGGCCCCACCTGAGCAATTCCTCTGCCCTCTTCAGGGCCCAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3419217 52 - 10304083 CCCTGTGCCCTGGCCCCACCTGAGCAATTCCTCTGCCCTCTTCAGGGCCCAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3520409 52 - 107702431 CCCTGTGCCCTGGCCCCACCTGAGCAATTCCTCTGCCCTCTTCAGGGCGCAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1051223 52 + 1565135 CCCTGTGCCCTGGCCCCACCTGAGCAATTCCTCTGGCCTCTTCAGGGCCCAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3413490 52 - 13651311 CCCTGTGCCCTGGCCCCACCTGAGCAATTCCTCTGCCCTCTTCAGGGCCCAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3500978 14 - 108792865 -------------CCCCAT-------------------------GGGCATAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3144438 14 - 7082604 -------------CCCCAT-------------------------GGGCATAG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3372837 14 + 7587287 -------------CCCCAT-------------------------GGGCATAG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2580855 45 + 5252280 CCCTGTCCCCTGGCC-------GGCACCTCCTCTGCCCTCTTCAGGGCTCAT i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 664223 2126 + 2232271 I e cebCap1.NW_016107454v1 630622 14 + 5243153 I a score=373953.000000 s hg38.chr2_KI270769v1_alt 98696 38 + 120616 CCAGGTGGTCACAGCAAATCTGGT-----CAGG-------ACCAGGGACA s panTro5.chr2A 3561178 38 + 111504155 CCAGGTGGTCACAGCAAATCTGGT-----CAGG-------ACCAGGGACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3421446 38 + 114371477 CCAGGTGGTCACAGCAAATCTGGT-----CAGG-------ACCAGGGACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 299990 38 + 637652 CCAGGTGGTCACAGCAAATCTGGT-----CAGG-------ACCAGGGACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3095400 38 + 81552678 CCAGGTGGTCACAGCAAATCTGGT-----CAGG-------ACCAGGGACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3359470 38 + 108979918 ACAGGTGGTCACAGCAAGTCTGGC-----CAGG-------ACTAGGGACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5071608 38 - 111193037 ACAGGTGGTCACAGCAAGTCTGGC-----CAGG-------ACTAGGGACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3462830 38 + 3644372 ACAGGTGGTCACAGCAAGTCTGGC-----CAGG-------ACTAGGGACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3419269 38 - 10304083 ACAGGTGGTCACAGCAAGTCTGGC-----CAGG-------ACTAGGGACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3520461 38 - 107702431 CCAGGTGGTCACAGCAAGTCTGGT-----CAGG-------ACTAGGGACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1051275 38 + 1565135 ACAGGTGGTCACAGCAAGTCTGAC-----CAGG-------ACTAGGGACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3413542 38 - 13651311 CCAGGTGGTCACAGCAAGTCTGGT-----CAGG-------ACTAGGGACA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3500992 43 - 108792865 CCAGGTGGTCACAGCAAATCTGGTCAGGGCAGG-------ACAGGGGCCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3144452 43 - 7082604 CCAGGTGGTCACAGCAAATCTGGTCAGGGCAGG-------ACAGGGGTCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 630636 43 + 5243153 CCAGGTGGACACAGCAAATCTGGTCAGGGCAGG-------ACTGGGGCCA i cebCap1.NW_016107454v1 I 14 C 0 s aotNan1.NW_018509326v1 3372851 43 + 7587287 CCAGGTGGTCACAGCAAATCTGGTCAGGGCAGG-------ACTGGGGCCA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2580900 44 + 5252280 -CCAACGGTTATAGCAAGTCTGGT-----CAAGGACCTACACCAATGACA i otoGar3.GL873658 C 0 I 1158 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 664223 2126 + 2232271 I a score=1651653.000000 s hg38.chr2_KI270769v1_alt 98734 200 + 120616 ATCAGCCCGCAGGGACGTCCT--------------GCCTCAGCCATCCACTTGATGGTGACGACTGCCCCGACCCCTCTCTCTCAGCAGCTGTGCCTGCCTGGAGCCCCCGTACCCCTCACCCGGCCGTAAGGGCTGCTGCACCCTCTGCTCTCCTCACTGGACTGTGGCGTCCTGAGGAACCCACCAGCCACTTTCTTATGCATCTCGGCACT s panTro5.chr2A 3561216 200 + 111504155 ATGAGCCCGCAGTGACGTCCT--------------GCCTCAGCCATCCACCTGATGGTGACGACTGCCCCGACCCCTCTCTCTGAGCAGCTGTGCCTGCCTGGAGCCCCTGTACCCCTCACCCGGCCGTAAGGGCTGCTGCACCCTCTGCTCTCCTCACTGGACTGTGGCGTCCTGAGGAACCGACCAGCCACTTTCTTATGCATCTCGGCACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3421484 200 + 114371477 ATGAGCCCGCAGTGACGTCCT--------------GCCTCAGCCATCCACCTGATGGTGACGACTGCCCCGACCCCTCTCTCTGAGCAGCTGTGCCTGCCTGGAGCCCCTGTACCCCTCACCCGGCCGTAAGGGCTGCTGCACCCTCTGCTCTCCTCACTGGACTGTGGCGTCCTGAGGAACCGACCAGCCACTTTCTTATGCATCTCGGCACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300028 198 + 637652 ATGAGCCCGCAGGGACGTCCT--------------GCCTCAGCCATCCACTTGATGGTGACGACTGCCCCGACCCCTCTCTCTGAGCAGCTGTGCCTG-CTGGAGCCCCCGTACCCCTCACCCGGCCGTAAGGGCTGCTGCA-CCTCTGCTCTCCTCACTGGACTGTGGCGTCCTGAGGAACCGACCAGCCACTTTCTTATGCATCTCGGCACT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3095438 200 + 81552678 AGGAGCCCGCAGTGACATCCT--------------GCCTCAGCCATCCACCTGATGGTGACGACTGCCCCGAACCCTCTCTCTGAGCAGCTGTGCCTGCCTGGAGCCCCCGTACTCCTCAACCAGCCATAAGGGCTGCTGCACCCTCTGCTGTCCTCACTGAACTGTGGCATCCTGAGGAACCAACCAGCCACTTTTTTATGCATCTCGGCACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3359508 196 + 108979918 ATGAGCCTGCAGTGACATCCT--------------GCCTCAGCCATCCACCCGATGGTCATGACTGTCCTGACCCCTCTCTCTGAGCAGCTGTCCCTGCCCGGAGTCCCCATACCCCTCACCCAGCCGTAAGGGCTGCTGCACCCTCTGCTCTCCTTACCGGACTGTGGCATCCTGAGGAACCGACCAGCCAC----TTATGCATCTCGGCACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5071646 195 - 111193037 ATGAGCCTGCAGTGACATCCT--------------GCCTCAGCCATCCACCCGATGGTCATGACTGTCCTGACCCCTCTCTCTGAGCAGCTGTCCCTGCCCGGAGTCCCCATACACCTCACCCAGCCGTAAGGGCTGCTGCACCCTCTGCTCTCCTTACCGGACTGTGGCATCCTGAGGAACCGACCAGCCAC-----TATGCATCTCGGCACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3462868 195 + 3644372 ATGAGCCTGCAGTGACATCCT--------------GCCTCAGCCATCCACCCGATGGTCATGACTGTCCTGACCCCTCTCTCTGAGCAGCTGTCCCTGCCCGGAGTCCCCATACACCTCACCCAGCCGTAAGGGCTGCTGCACCCTCTGCTCTCCTTACCGGACTGTGGCATCCTGAGGAACCGACCAGCCAC-----TATGCATCTCGGCACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3419307 196 - 10304083 ATGAGCCTGCAGTGACATCCT--------------GCCTCAGCCATCCACCCGATGGTCATGACTGTCCTGACCCCTCTCTCTGAGCAGCTGTCCCTGCCCGGAGTCCCCGTACCCCTCACCCAACCGTAAGGGCTGCTGCACCTTCTGCTCTCCTTACCGGACTGTGGCATCCTGAGGAACCGACCAGCCAC----TTATGCATCTCGGCACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3520499 196 - 107702431 ATGAGCCTGCAGTGACATCCT--------------GCCTCAGCCATCCACCCGATGGTCATGACTGTCCTGACCCCTCTCTCTGAGCAGCTGTCCCTGCCCGGAGTCCCCATACCCCTCACCCAGCCGTAAGGGCTGCTGCACCCTCTGCTCTCCTTACCGGACTGCAGCATCCTAAGGAACCGACCAGCCAC----TTACACATCTTGGCACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1051313 196 + 1565135 ATGAGCCTGCAGTGACATCCT--------------GCCTCAGCCATCCACCCGATGGTCATGACTGTCCTGACCCCTCTCTCTGAGCAGCTGTCCCTGCCCGGAGTCCCCGTACCCCTCACCCAGCCGTAAGGGCTGCTGCACCCTCTGCTCTCCTTACCGGACTGTCGCGTCCTGAGGAACCGACCAGCCAC----TTATGCATCTCGGCACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3413580 210 - 13651311 ATGAGCCCACAGTGACATCCTGCCTCAGCCATCCAGCCTCAGCCATCCACCCGATGATCATGACTGTCCTGACCCCTCTCTCTGAGCAGCTGTCCCTGCCCGGAGTCCCCATACCCCTCACCCAGCCGTAAGGGCTGCTGCACCCTCTGCTCTCCTTACTGGACTGTGGCATCCTGAGGAACCGACCAGCCAC----TTATGCATCTCGGCACT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3501035 184 - 108792865 ATGAGCCCACAGTGACCTCCT--------------GCCTCAGCCATCCACCCGA--------------CCCACCCCTCTCTCTAAGCAGCTGTCCC-GCCCAGAGCCCCTGGACCCCTCCCCCAGCCATAA-GGCTGCTCCACCCTCTGTGCTCCTCACTGGAGTGTGGCAAAGTAAGGACCCCACTGGCCACTTTCTTATGCATCTAAGGACT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3144495 176 - 7082604 GTGAGCCCACAGTGA---CCT--------------GCCTCAGCCATCCACCCG------------------ACCCCTCTCTCTAAGCAGCTGTCTC-ACCCGGAGCCCCTGGACCCCTCCCCTGGCCATAA-CGCTGCTCCATCCTCTGCTCCCCTCACTGGAGTGTGGCATCCTAAGGACCCAACT-GCCACTTTCTTATGCATTTTGGCACT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 630679 188 + 5243153 GTGAGCCCACGGTGACCTCCT--------------GCCTCAGCTGTCCACCTGATGGTGATGACTG-CCCCACCCCTCTCTCTAAGCAGCTGTCCC-GCCCAGAGCCCCTGGACCCCTCCCCCGGCCATAA-GGCTGCTCCACCCTCTGCTCTCCTCACTGGAGTGTGGCAT--------CCTGACT-GCCACTTTCTTATGCATTTCGGCACT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3372894 183 + 7587287 GTGAGCCCGCAGTGACCTCCT--------------GCCTCAGCCATCCACCCGA-------------CCCTAACCCTCTCTCTAAGTAGCTGTCCC-GCCCAGAGCCCCTGGACCCCTCCGCCGGCCATAA-GGCTGCTCCACCCTCTGCTCTCCTCACTGGAATGTGGCATCCTAAGGACT--ACCGGCCACTTTCTTATGCATTTCGGCACT i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 664223 2126 + 2232271 I e otoGar3.GL873658 2580944 1158 + 5252280 I a score=2037568.000000 s hg38.chr2_KI270769v1_alt 98934 265 + 120616 CAGGGGACAAAACCAGCTCTCCCGGAGGGGCTTGTGGGACCGAGTTTCACTGAGAGACATGGTGAATGGAAGAACTTCACGCATCATAGCAGGCAGAGGACTCCGGGAGCCCTTGACCCAACCCACAGGTCATCTTACCAGTACTAGCGACTCACTGCGGTAGTGAGTTGGGTGAGGCCCAGAAGTCCCTCCTGGTCACTTGCGATGGGATGAAGATATTTTTGAAACCTAGAGAGACAGGGTTATCTAACAGAGTAAGAAAGCC s panTro5.chr2A 3561416 265 + 111504155 CGGGGGACAAAACCAGCTCTCCTGGAGGGGCTTGTGGGACCGAGTTTCACTGAGAGACATGGTGAATAGAAGAACTTCACGCACCATAGCAGGCAGAGCACTCCAGGAGCCCTTGACCCGACCCACAGGCCATCTTACCAGTACTAGCGACTCACTGCGGTAGTGAGTTGGGTGAGGCCCAGAAGTCCCTCCTGGTCACTTGCGATGGGGTGAAGATATTTTTGAAACCTAGAGAGACAGGGTTATCTAACAGAGTAAGAAAGCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3421684 265 + 114371477 CAGGGGACAAAACCAGCTCTCCTGGAGGGGCTTGTGGGACCGAGTTTCACTGAGAGACATGGTGAATAGAAGAACTTCACGCACCATAGCAGGCAGAGCACTCCAGGAGCCCTTGACCCGACCCACAGGCCATCTTACCAGTGCTAGCGACTCACTGCGGTAGTGAGTTGGGTGAGGCCCAGAAGCCCCTCCTGGTCACTTGCGATGGGGTGAAGATATTTTTGAAACCTAGAGAGACAGGGTTATCTAACAGAGTAAGAAAGCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300226 265 + 637652 CAGGGGACAAAACCAGCTCTCCCGGAGGGGCTTGTGGGACCGAGTTTCACTGAGAGACATGGTGAATAGAAGAACTTCACGCATCATAGCAGGCAGAGGACTCCGGGAGCCCTTGACCCGACCCACAGGTCATCTTACCAGTACTAGGGACTCACTGCGGTAGTGAGTTGGGTGAGGCCCAGAAGTCCCTCCTGGTCACTTGCGATGGGGTGAAGATATTTTTGAAACCTAGAGAGACAGGGTTATCTAACAGAGTAAGAAAGCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3095638 259 + 81552678 CAGGGGACAAAACCAGCTCTCCTGGGGGGGCTTGTGGGACCGAGTTCCACTGAGAGACATGGTGAATAGAAGAACTTCACGCATCACAGCAGGCAGAGCGCTCCGGGAGCCCCTGACCCGACC------TCATCTCACCAGTAGTAGGGACTCACTGCGGTAGTGACGTGGGTGAGGCCCAGAAGTCCCTCCTGCTCACTTGCGATGGGGTGAAGATATTTTTGAAACCTAGAGAGACAGGGTTATCTGACAGAGTAATAAAGCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3359704 262 + 108979918 C--GGGACAAAACCAGCTCTCCCGGGGGGGCTTGTGGGACCGAGTTTCACTGA-AGACATGGTGAATAGAAGAACTTCACGCATCATAGCAGGCAGAGCACTCCAGGAGCCCGTGACCCAACCCACAGGTCATCTCACCAGTACTAGGGACTCACTGTGGCAGTGAGGCGGGTGAGGCCCAGAAGTCCTTCCTGGTCACCTGCGATGGGGTGAAGATACTTGTAAACCCCAGAGAGACAGGCTTATCTAACAGAGTAATAACGCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5071841 262 - 111193037 C--GGGACAAAACCAGCTCTCCCGGGGGGGCTTGTGGGACCGAGTTTCACTGA-AGACATGGTGAATAGAAGAACTTCACGCATCATAGCAGGCAGAGCACTCCAGGAGCCCGTGACCCAACCCACAGGTCATCTCACCAGTACTAGGGACTCACTGTGGCAGTGAGGCGGGTGAGGCCCAGAAGTCCTTCCTGGTCACCTGCGATGGGGTGAAGATACTTGTAAACCCCAGAGAGACAGGCTTATCTAACAGAGTAATAACGCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3463063 262 + 3644372 C--GGGACAAAACCAGCTCTCCCGGGGGGGCTTGTGGGACCGAGTTTCACTGA-AGACATGGTGAATAGAAGAACTTCACGCATCATAGCAGGCAGAGCACTCCAGGAGCCCGTGACCCAACCCACAGGCCATCTCACCAGTACTAGGGACTCACTGTGGCAGTGAGGCGGGTGAGGCCCAGAAGTCCTTCCTGGTCACCTGCGATGGGGTGAAGATACTTGTAAACCCCAGAGAGACAGGGTTATGTAACAGAGTAATAACGCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3419503 262 - 10304083 C--GGGACAAAACCAGCTCTCCCGGGGGAGCTTGTGGGACCGAGTTTCACTGC-AGACATGGTGAATAGAGGAACTTCACGCATCATAGCAGGCAGAGCACTCCAGGAGCCCATGACCCAACCCATAGGTCATCTCACCAGTACTAGGGACTCACTGTGGCAGTGAGGCGGGTGAGGCCCAGAAGTCCTTCCTGGTCACCTGCGATGGGGTGAAGATACTTGTAAACCCCAGAGAGACGGGGTTATCTAACAGAGTAATAACGCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3520695 261 - 107702431 C--GGGACAAAACCAGCTCTCCCGGGGGGGCTTGTGGGACCGAGTTTCACTG--AGACATGGTGAATAGAAGAACTTCACGCATCATAGCAGGCAGAGCACTCCAGGAGCCCGTGACCCAACCCACAGGTCATCTTACCAGTGCTAGGGACTCACTGCAGCAGTGAGGTGGGTGAGGCCCAGAAGTCCTTCCTGGTCACTTGCGATGGGGTGAAGATACTTGTAAACCCCAGAGAGACAGGGTTATCTAACAGAGTAATAACGCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1051509 261 + 1565135 C--GGGACAAAACCAGCTCTCCC-GGGGGGCTTGTGGGACCGAGTTTCACTGA-AGACATGGTGAATAGAAGAACTTCACGCATCATAGCAGGCAGAGCACTCCAGGAGCCCATGACCCAACCCATAGGTCATCTCACCAGTACTAGGGACTCACTGCGGCAGTGAGGCGGGTGAGGCCCAGAAGTCCTTCCTGGTCACCTGCGATGGGGTGAAGATACTTGTAAACCCCAGAGAGACGGGGTTATCTAACAGAGTAATAACGCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3413790 262 - 13651311 C--GGGACAAAAGCAGCTCTCCCGGGGGCACTTGTGGGACCGAGTTTCACTGAGAGACATGGTGAATAGAAGAACTTCCCACATCATGGCAGGCAGAGCACTCCAGGAGCCCGTGACGCAACCCGCAGGTCATCTCACCAGTACTACGGACTCACTGCGGCAGTGAGGCGGGCGAGGCCCGGAAGTCCTTCCTGGTCACTTGCGATGGGGTGAAGATACTTGTAAA-CCCAGAGAGACAGGGTTATCTAACAGAGTAATAAAGCC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3144671 260 - 7082604 CAGGTGACAAAAGCAGCTCTCCC-AGGGGGCTTGTGGGA-TGAGTTTCACTGAGAGACACAGTGCATAGAAGAGCTTCCCGCATCACAGCAGGCAGAGCACT-CGGGAGCCC-TGACCCAGCCCACAGGGCATCGCAGCAGTGCTAGTGACTCACTGCGGTAG-GAGGCGGGTGAGGCCCAGAAGTCCCTCCTGGTCACTTGCAATGGGGTAGAGATGTTTTCAAAACCTAGAAAGACAGGGTTCTCTACCAGAGTAATAAAGGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 630867 247 + 5243153 CAGGTGACAAAAGCAGCTCTCCC-AGGGGGCTTGAGGGA-TGAGTTTCACTGAAAGACACGGTGCACAGAAGAGCTTCAGCCATCACAGCAGGCAGAGCACT-CAGGAGCCC-TGACCCAGC-------------CACCAGTGCTAGCGACTCTCTGCGGTAG-GAGGCGGGTGCGGCCCAGAAGTCCCTCCTGGTCACTTGCGATGGGGTGGAGATGTTTTCAAAATCTAGAAAGACAGGGTTCTCTACCAGAGTAATAAAGGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3373077 256 + 7587287 CAGGTGACAAAAGCAGCTCT--C-GGGGGGCTTGTGGGACCAAGTTTCACTGAGAGACATGGTGCACAGAAGAGCTTCCCACATCACAGCAGGCAGAGCACT-CGGGAGCCC-TGACTCAGCCCACAGGGCATCGCACCAGTGCTCGCGACTCACTGCGGTAG-GAGGCGGTTGAGGCCCAGAAGTCCCTCCTGGTCACTTGTGATGGGGT---GCTGTTTTCAAAACTTAGAAAGACAGGGTTCTCTACCAGAGTAATAAAGGC i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 664223 2126 + 2232271 I e otoGar3.GL873658 2580944 1158 + 5252280 I e calJac3.chr14 3501219 0 - 108792865 C a score=1959462.000000 s hg38.chr2_KI270769v1_alt 99199 239 + 120616 AGGGCTGGCTTCTTTCCCCTCGGAATGAAGTTCAAGCCTCCTCTGTCCCATAAGTGCACAAATGTCCACCGTGCTAACTTTACACGCTCCATTTTTACTTTGGGCAAGCAGGATTTGCAGCGCG-GGAGAGA-TGACCTGGACATGAGCCGGCAGTGGCCTGCGCACCACAGGAGGCCCTTCAGCCGACGGCCATGTCTGCGCTGCGCGATCCTGTCCCTGTCAGAGCCGCTGACCTGGGT s panTro5.chr2A 3561681 239 + 111504155 AGGGCTGGCTTCTTTACCCTCGGAATGAAGTTCAAGCCTCCTCTGTCCCATAAGTGCACAAATGTCCACCGTGCTAACTTTACAAGCTCCATTTTTACTTTGGGCAAGCAGGATTTGCAGCGCG-GGAGAGA-TGACCTGGACATGAGCTGGCAGTGGCCTGCGCACCACAGGAGGCCCTTCAGCCGACGGCCATGTCTGTGCTGCGCGATCCTGTCCCTGTCAGAGCCGCTGACCTGGGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3421949 239 + 114371477 AGGGCTGGCTTCTTTACCCTCGGAATGAAGTTCAAGCCTCCTCTGTCCCATAAGTGCACAAATGTCCACCGTGCTAACTTTACAAGCTCCATTTTTACTTTGGGCAAGCAGGATTTGCAGCGCG-GGAGAGA-TGACCTGGACATGAGCCGGCAGTGGCCTGCGCACCACGGGAGGCCCTTCAGCCGACAGCCATGTCTGTGCTGCGCGATCCTGTCCCTGTCAGAGCCGCTGACCTGGGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300491 239 + 637652 AGGGCTGGCTTCTTTCCCCTCGGAATGAAGTTCAAGCCTCCTCTGTCCCATATGTGCACAAATGTCCACCGTGCTAACTTTACAAGCTCCATTTTTACTTTGGGCAAGCAGGATTTGCAGCGCG-GGAGAGA-TGACCTGGACATGAGCCGGCAGTGGCCTGCGCACCACAGGAGGCCCTTCAGCCGACGGCCATGTCTGCGCTGCGCGATCCTGTCCCTGTCAGAGCCGCTGACCTGGGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3095897 236 + 81552678 AGGGCTGGCTTCTTTCCCCTCAGAATGAAGTTCAAGCCTCCTCAGTCCCATAAGTGCACAAATGTCCACCGTGCTAACTTTACAAGCTCCATTTTCACCTTGGGCAAGCAGGATTTGCGGCGTG-GAAGAAA-TGACCTGGACATGAGCCAGCAGCGGCCTGGG---CACAGGAGGCCCTTCGGCCGACGGCCATGCCTGCGCTGCGCGATCTTGTCCCTGTCAGAGCCGGTGACCTGGGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3359966 236 + 108979918 AGGGCTGGCTTCTTTCCCCTCGGAATGAAGTTCAAGCCTTCTCTGTCCCATAAGTGCACAAATGTCCACCGTGCTAACTTTACAAGCTCCATTTTTACTTTGGGCAAGCAGGATTTGTGGCGTG-GGAGAAA-TGACCTGGACATGAGCCGGCAGCAGCCTGAG---CACAAGAAGCCCTTTGGCTGACAGCCATGCCTGCATCGCACGATCCTGTGCCCATCAGAGCCGCTGACCCGGGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5072103 236 - 111193037 AGGGCTGGCTTCTTTCCCCTCGGAATGAAGTTCAAGCCTTCTCTGTCCCATAAGTGCACAAATGTCCACCGTGCTAACTTTACAAGCTCCATTTTTACTTTGGGCAAGCAGGATTTGTGGCGTG-GGAGAAA-TGACCTGGACATGAGCCGGCAGCAGCCTGGG---CACAAGAAGCCCTTTGGCCGACAGCCATGCCTGCATTGCACGATCCTGTGCCCATCAGAGCCGCTGACCCGGGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3463325 236 + 3644372 AGGGCTGGCTTCTTTCCCCTCGGAATGAAGTTCAAGCCTTCTCTGTCCCATAAGTGCACAAATGTCCACCGTGCTAACTTTACAAGCTCCATTTTTACTTTGGGCAAGCAGGATTTGTGGCGTG-GGAGAAA-TGACCTGGACATGAGCCGCCAGCAGCCTGGG---CACAAGAAGCCCTTTGGCCGACAGCCATGCCTGCATTGCACGATCCTGTGCCCATCAGAGCCGCTGACCCGGGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3419765 236 - 10304083 AGGGCTGGCTTCTTTCCCCTCGGAATGAAGTTCAAGCCTTCTCTGTCCCATAAGTGCTCAAATGTCCACCATGCTAACTTTACAAGCTCCATTTTTACTTTGGGCAGGCAGGATTTGCGGCGTG-GGAGAAA-TGACCTGGACATGAGCCAGCAGCAACCTGGG---CACAAGAAGCCCTTTGGCCGACGGCCATGCCTGCGTTGCACGATCCTGTGCCCATCAGAGCCGCTGACCCGGGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3520956 236 - 107702431 AGGGCTGGCTTCTTTCCCCTCAGAATGAAGTTCGAGCCTTCTCTGTCCCGTAAGTGCACAAATGTCCACCGTGCTAACTTGACAAGCTCCATTTTTACTTTGGGCAAGCAGGATTTGCGGCGTA-GGAGAAA-TGACCTGGACGTGAGCCAGCAGCAGCCTGGG---CACAAGAAGCCCTTTGGCCGACGGCCATGCCTGCGCTGCACGATCCTGTCCCTGTCAGAGCCGCTGACCCGGGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1051770 236 + 1565135 AGGGCTGGCTTCTTTCCCCTCGGAATGAAGTTCAAGCCTTCTCTGTCCCATAAGTGCTCAAATGTCCACCGTGCTAACTTTACAAGCTCCATTTTTACTTTGGGCAAGCAGGATTTGCGGCGTG-GGAGAAA-TGACCTGGACATGAGCCGGCAGCAACCTGGG---CACAAGAAGCCCTTTGGCCGACGGCCATGCCTGCTTTGCACGATCCTGTGCCCATCAGAGCCGCTGACCCGGGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3414052 236 - 13651311 AGGGCTGGCTTCTTTCCCCTCAGAAAGAAGTTCAAGCCTCCTCTGTCCCATAAGTGCACAAATGTCCACCGTGCTAACTTTACAAGCTCCGTTTTTACTTTGGGCAAGCAGGATTTGCGGCGTG-GGAGAAA-TGACCTGGACATGAGCCGGCAGCAGCCTGGG---CACAAGAAGCGCTTTGGCCGACGGCCGTGCCTGCGTTGCACGATCCTGTCCGCATCAGAGCCGCTGACCCGGGT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3144931 214 - 7082604 G---------------------GAATGAAGTTCAAGCCTTGTCTGTCCCATAGTTGTGCAAATGTCCACTGTGCTAACCTCACAAGCTCCATTTTTACTTTGGGCAAGCAGGATTTGTGGCGTG-AGATAAATTGACCTGAACATGCTCCGGCAGTGGCCTGAGCACTGC---AGACCTTT--GCCGACAGCCACACCTGCACTGCACAATCCCGTACCCGTCAGAGCCGCTGGCCCGGGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 631114 236 + 5243153 GGGGCTGGCCTCTTTCCCCTCAGAATGAAGTTCAAGCCTC-TCTGTCCCATATGTACGCAAATGTCCACCGTGCTGACCTCCCAAGCTCCATTTTTAC-TTGGGCAAGCAGGATTTGTGGCGTG-GGATAAACTGACCTGGACACACGCCAGCAGCGGCCTGAGCACCACAGGAGAACTTT--GCCGACAGCCACACCTGCACTGCACAATCCTGTCCCCGTCAGAGCCGCTGGCCAGGGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3373333 238 + 7587287 AGGGCTGGTTTCTTTCCCCTCGGAATGAAGTTCAAGCCTTCTCTGTCCCATAGGTGTGCAAATGTCCACCGTGCTAACCTCACAAGCTCCATTTTTACTTTGCGCAAGCAGGATTCGTGGCGTG-GGATAAATTGACCTGGACACGCACCAGCAGCGGCCTGAGCACCACAGGAGACCTTT--GCCAACAGCCACACCTGCACTGCACGATCCTGTCCCCGTCAGAGCCGCTGGCCCAGGT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2582102 196 + 5252280 AGGGATGGTT-------CCTCTGAAGGAAGGTCAAGCTTCCTCTGTCCCATCTGCTCACAAACTCACACCACGCTGACTTAACAAGCTCTGTTTCCACTTCGTGCAAGTGGGACTTAAACCCAGAAGAGAAA-TTGCCAAGG-AGGACACAGCAG----CTGGT---CACTCTAGCCACCT-------CGGCCCTGCTGGCTCTG---------------------GCC-CTGACCCAGAG i otoGar3.GL873658 I 1158 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 664223 2126 + 2232271 I e calJac3.chr14 3501219 0 - 108792865 C a score=438957.000000 s hg38.chr2_KI270769v1_alt 99438 46 + 120616 CTAGTCCCACAGAACCTCTCCTGGAG-CCTTGGGGACCAGGGCTGGC s panTro5.chr2A 3561920 46 + 111504155 CTAGTCCCACAGAACCTCTCCTGGAG-CCTTGGGGACCAGGGCTGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3422188 46 + 114371477 CTAGTCCCACAGAACCTCTCCTGGAG-CCTTGGGGACCAGGGCTGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300730 46 + 637652 CTAGTCCCACAGAACCTCTCCTGGAG-CCTTGGGGACCAGGGCTGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096133 46 + 81552678 CTAGTCCCACAGAACCTCTCCTGGAG-CCTTGGGGACCAGGGCTGGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3360202 46 + 108979918 CTAGTCCCACAGAACCTCTCCTGGAG-CCTTGGGAGCCAGAGTTGGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5072339 46 - 111193037 CTAGTCCCACAGAACCTCTCCTGGAG-CCTTGGGAGCCAGAGTTGGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3463561 46 + 3644372 CTAGTCCCACAGAACCTCTCCTGGAG-CCTTGGGAGCCAGAGTTGGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3420001 46 - 10304083 CTAGTCCCACAGAACCTCTCCTGGAG-CCTTGGGAGCCAGGGCTGGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3521192 46 - 107702431 CTAGTCCCACAGAACCTCTCCTGGAG-CCTTGGGAACCAGGGCTGGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1052006 46 + 1565135 CTAGTCCCACAGAACCTCTCCTGGAG-CCTTGGGAGCCAGGGTTGGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3414288 46 - 13651311 CCAGTCCCACAGAACCTCTCCTGGAG-CCTTGGGAACCAGGGCTGGC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3145145 46 - 7082604 CTGCTCCCACAGACCCTCTCCTGGAG-CCTTAGGGACCAGGGCTGGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 631350 46 + 5243153 CTGGTCCCACAGACCCTCTCCTGGAG-CCTTGGGGACCAGGGCTGGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3373571 47 + 7587287 CTGGTCCCACAGAGCCTTTCCTGGAGCCCTTGGGGACCAGGGCTGGT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2582298 25 + 5252280 CCAGCCCCACAGACCCTGG-CTGGAC--------------------- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 666349 46 + 2232271 CTGGGGCCCCAGGGCCTTTCCTGGAG-CCCCAGGGCCTTGCACTGGC i dasNov3.JH580157 I 2126 I 7160 e mm10.chr12 91442604 836 - 120129022 I e calJac3.chr14 3501219 0 - 108792865 C a score=431131.000000 s hg38.chr2_KI270769v1_alt 99484 64 + 120616 AGCTGAAGTCACTCCTCTGCGTAATGGAA------TGAGA------------AGTAAGGCTTTAAGACGTCAACACTGTGTC s panTro5.chr2A 3561966 82 + 111504155 AGCTGAAGTCACTCCTCTGCGTAATGGTAAGGCTTTAAGACCCTCTGTGTAGGGTAAGGCTTTAAGACGTCAACACTGTGTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3422234 82 + 114371477 AGCTGAAGTCACTCCTCTGCGTAATGGTAAGGCTTTAAGACCCTCTGTGTAGGGTAAGGCTTTAAGACGTCAACACTGTGTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300776 64 + 637652 AGCTGAAGTCACTCCTCTGTGTAACGGAA------TGAGA------------AGTAAGGCTTTAAGACGTCAACACTGTGTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096179 64 + 81552678 AGCTGAAGTCACTCCTCTGCATAATGGAA------TGAGC------------AGTAAGGCTTTAAGACGTCAACACTGTGTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3360248 64 + 108979918 AGCTGAAGTCACTCCTCTGCAGAGCGGAA------TGAGA------------ATTAAGGCTTTAAGACGTCAACACTGTGTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5072385 64 - 111193037 AGCTGAAGTCACTCCTCTGCAGAGCGGAA------TGAGA------------ATTAAGGCTTTAAGACGTCAACACTGTGTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3463607 64 + 3644372 AGCTGAAGTCACTCCTCTGCATAGCGGAA------TGAGA------------ATTAAGGCTTTAAGACGTCAACACTGTGTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3420047 64 - 10304083 AGCTGAAGTCACTCCTCTGCGTAGCGGAA------TGAGA------------AGTAAGGCTCTAAGACGTCAACACTGTGTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3521238 63 - 107702431 AGCTGAAGTCACTCCT-TGCATAGCGGAA------TGAGA------------AGTAAGGCTTTAAGACGTCAACACTGTGTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1052052 64 + 1565135 AGCTGAAGTCACTCCTCTGCGTAGCGGAA------TGAGA------------AGTAAGGCTTTAAGACGTCAACACTGTGTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3414334 59 - 13651311 AGCTGAAGTCACTCCTCTGCATAGCAGAA------TGAGA------------AGTAA-----TAAGACGTCAACACTGTGTC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3145191 49 - 7082604 GGCTGAAGTCACTGCCCTGTGTAGTGGA---------AGA------------AGTGAGTCTCTGAGATTC------------ i saiBol1.JH378218 C 0 I 1 s cebCap1.NW_016107454v1 631396 64 + 5243153 GGCTGAAGTCACTTCCCTGTGCAGTGGAA------GGAGA------------AGTGAGTCTCTGAGATGCCGACACTGTGTC i cebCap1.NW_016107454v1 C 0 I 867 s aotNan1.NW_018509326v1 3373618 61 + 7587287 GGCTGAAGTCACTCCCCTGTGTAGTGGA---------AGA------------AGTGAGTCTCTGAGATGGTAACACTGTGTC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2582323 46 + 5252280 ------AGTCACTCCCCAG--AAGTAGAA------CAAGA------------TTTGAGGCTCTAAAAC----------TGTC i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 666395 7160 + 2232271 I e calJac3.chr14 3501219 0 - 108792865 C a score=136978.000000 s hg38.chr2_KI270769v1_alt 99548 22 + 120616 TACACTGTGT-CCCACCGTGAGC s panTro5.chr2A 3562048 22 + 111504155 TACACTGTGT-CCCACCGTGAGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3422316 22 + 114371477 TACACTGTGT-CCCACCGTGAGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300840 22 + 637652 TATACTGTGT-CCCACCGTGAGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096243 22 + 81552678 TACGCTGTGT-CCCACCGTAAGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3360312 21 + 108979918 TACAC-GTGT-CCCACGGTGAGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5072449 21 - 111193037 TACAC-GTGT-CCCATGGTGAGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3463671 21 + 3644372 TACAC-GTGT-CCCACGGTGAGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3420111 21 - 10304083 TACAC-GTGT-CCCACGGTGAGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3521301 21 - 107702431 TACAC-GTGT-CCCACCGTGAGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1052116 21 + 1565135 TACAC-GTGT-CCCACGGTGAGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3414393 22 - 13651311 TACACAGCAT-CCCACCGTGAGC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3145241 22 - 7082604 GACACTGTGT-CCCACCATGAGC i saiBol1.JH378218 I 1 C 0 s aotNan1.NW_018509326v1 3373679 22 + 7587287 GACACTGTGT-CCCACCATGAGC i aotNan1.NW_018509326v1 C 0 I 316 s otoGar3.GL873658 2582369 22 + 5252280 TGCACCATGTGCCCACTACAAG- i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 666395 7160 + 2232271 I e cebCap1.NW_016107454v1 631460 867 + 5243153 I e calJac3.chr14 3501219 0 - 108792865 C a score=37595.000000 s hg38.chr2_KI270769v1_alt 99570 6 + 120616 AGACGT s panTro5.chr2A 3562070 6 + 111504155 AGACGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3422338 6 + 114371477 AGACGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300862 6 + 637652 AGACAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096265 6 + 81552678 AGACGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3360333 6 + 108979918 AGACGT i rheMac8.chr13 C 0 I 74 s macFas5.chr13 5072470 6 - 111193037 AGACGT i macFas5.chr13 C 0 I 62 s macNem1.NW_012011978v1 3463692 6 + 3644372 AGACGT i macNem1.NW_012011978v1 C 0 I 74 s cerAty1.NW_012000820v1 3420132 6 - 10304083 AGACGT i cerAty1.NW_012000820v1 C 0 I 71 s chlSab2.chr14 3521322 6 - 107702431 AGACGT i chlSab2.chr14 C 0 I 71 s manLeu1.NW_012104432v1 1052137 6 + 1565135 AGACGT i manLeu1.NW_012104432v1 C 0 I 62 s colAng1.NW_012118821v1 3414415 6 - 13651311 AGACGT i colAng1.NW_012118821v1 C 0 I 80 s saiBol1.JH378218 3145263 6 - 7082604 AGACGT i saiBol1.JH378218 C 0 I 56 s otoGar3.GL873658 2582391 5 + 5252280 GAACC- i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 666395 7160 + 2232271 I e cebCap1.NW_016107454v1 631460 867 + 5243153 I e aotNan1.NW_018509326v1 3373701 316 + 7587287 I e calJac3.chr14 3501219 0 - 108792865 C a score=1314.000000 s hg38.chr2_KI270769v1_alt 99576 1 + 120616 G s panTro5.chr2A 3562076 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3422344 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300868 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096271 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s saiBol1.JH378218 3145325 1 - 7082604 G i saiBol1.JH378218 I 56 C 0 s otoGar3.GL873658 2582396 1 + 5252280 A i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 666395 7160 + 2232271 I e cebCap1.NW_016107454v1 631460 867 + 5243153 I e aotNan1.NW_018509326v1 3373701 316 + 7587287 I e calJac3.chr14 3501219 0 - 108792865 C e colAng1.NW_012118821v1 3414421 80 - 13651311 I e manLeu1.NW_012104432v1 1052143 62 + 1565135 I e chlSab2.chr14 3521328 71 - 107702431 I e cerAty1.NW_012000820v1 3420138 71 - 10304083 I e macNem1.NW_012011978v1 3463698 74 + 3644372 I e macFas5.chr13 5072476 62 - 111193037 I e rheMac8.chr13 3360339 74 + 108979918 I a score=10476.000000 s hg38.chr2_KI270769v1_alt 99577 3 + 120616 GCT s panTro5.chr2A 3562077 3 + 111504155 GCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3422345 3 + 114371477 GCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300869 3 + 637652 GCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096272 3 + 81552678 GCT i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5072538 3 - 111193037 GCT i macFas5.chr13 I 62 C 0 s manLeu1.NW_012104432v1 1052205 3 + 1565135 GCT i manLeu1.NW_012104432v1 I 62 I 9 s saiBol1.JH378218 3145326 3 - 7082604 GCT i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2582397 3 + 5252280 GCT i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 666395 7160 + 2232271 I e cebCap1.NW_016107454v1 631460 867 + 5243153 I e aotNan1.NW_018509326v1 3373701 316 + 7587287 I e calJac3.chr14 3501219 0 - 108792865 C e colAng1.NW_012118821v1 3414421 80 - 13651311 I e chlSab2.chr14 3521328 71 - 107702431 I e cerAty1.NW_012000820v1 3420138 71 - 10304083 I e macNem1.NW_012011978v1 3463698 74 + 3644372 I e rheMac8.chr13 3360339 74 + 108979918 I a score=10845.000000 s hg38.chr2_KI270769v1_alt 99580 8 + 120616 TGGTCCCT s panTro5.chr2A 3562080 8 + 111504155 TGGTCCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3422348 8 + 114371477 TGGTCCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300872 8 + 637652 TGGTCCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096275 8 + 81552678 TGGTCCCT i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5072541 6 - 111193037 --GCACCT i macFas5.chr13 C 0 I 3 s saiBol1.JH378218 3145329 6 - 7082604 --GCCTCT i saiBol1.JH378218 C 0 I 37 s otoGar3.GL873658 2582400 8 + 5252280 TGTTTGCT i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 666395 7160 + 2232271 I e cebCap1.NW_016107454v1 631460 867 + 5243153 I e aotNan1.NW_018509326v1 3373701 316 + 7587287 I e calJac3.chr14 3501219 0 - 108792865 C e colAng1.NW_012118821v1 3414421 80 - 13651311 I e manLeu1.NW_012104432v1 1052208 9 + 1565135 I e chlSab2.chr14 3521328 71 - 107702431 I e cerAty1.NW_012000820v1 3420138 71 - 10304083 I e macNem1.NW_012011978v1 3463698 74 + 3644372 I e rheMac8.chr13 3360339 74 + 108979918 I a score=6540.000000 s hg38.chr2_KI270769v1_alt 99588 3 + 120616 GAT---------- s panTro5.chr2A 3562088 3 + 111504155 GAT---------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3422356 3 + 114371477 GAT---------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300880 3 + 637652 GAT---------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096283 3 + 81552678 GAG---------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3360413 3 + 108979918 GAG---------- i rheMac8.chr13 I 74 C 0 s macFas5.chr13 5072550 3 - 111193037 GAG---------- i macFas5.chr13 I 3 C 0 s macNem1.NW_012011978v1 3463772 3 + 3644372 GAG---------- i macNem1.NW_012011978v1 I 74 C 0 s cerAty1.NW_012000820v1 3420209 3 - 10304083 GAG---------- i cerAty1.NW_012000820v1 I 71 C 0 s chlSab2.chr14 3521399 3 - 107702431 GAG---------- i chlSab2.chr14 I 71 C 0 s manLeu1.NW_012104432v1 1052217 3 + 1565135 GAG---------- i manLeu1.NW_012104432v1 I 9 C 0 s saiBol1.JH378218 3145372 3 - 7082604 GAG---------- i saiBol1.JH378218 I 37 C 0 s otoGar3.GL873658 2582408 13 + 5252280 GAGGGGAATGAAG i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 666395 7160 + 2232271 I e cebCap1.NW_016107454v1 631460 867 + 5243153 I e aotNan1.NW_018509326v1 3373701 316 + 7587287 I e calJac3.chr14 3501219 0 - 108792865 C e colAng1.NW_012118821v1 3414421 80 - 13651311 I a score=24147.000000 s hg38.chr2_KI270769v1_alt 99591 3 + 120616 CCC s panTro5.chr2A 3562091 3 + 111504155 CCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3422359 3 + 114371477 CCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300883 3 + 637652 CCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096286 3 + 81552678 CCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3360416 3 + 108979918 CCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5072553 3 - 111193037 CCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3463775 3 + 3644372 CCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3420212 3 - 10304083 CCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3521402 3 - 107702431 CCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1052220 3 + 1565135 CCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3414501 3 - 13651311 CCC i colAng1.NW_012118821v1 I 80 C 0 s saiBol1.JH378218 3145375 3 - 7082604 TCC i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2582421 3 + 5252280 TCC i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 666395 7160 + 2232271 I e cebCap1.NW_016107454v1 631460 867 + 5243153 I e aotNan1.NW_018509326v1 3373701 316 + 7587287 I e calJac3.chr14 3501219 0 - 108792865 C a score=91902.000000 s hg38.chr2_KI270769v1_alt 99594 13 + 120616 CCAGGGCAGGCAC s panTro5.chr2A 3562094 13 + 111504155 CCAGGGCAGGCAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3422362 13 + 114371477 CCAGGGCAGGCAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300886 13 + 637652 CCAGGGCAGGCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096289 13 + 81552678 CCAGGGCAGGAGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3360419 13 + 108979918 CCAGGGCAGAAGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5072556 13 - 111193037 CCAGGGCAGAAGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3463778 13 + 3644372 CCAGGGCAGAAGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3420215 13 - 10304083 CCAGGGCAGAAGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3521405 13 - 107702431 CCAGGGCAGGAGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1052223 13 + 1565135 CCAGGGCAGAAGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3414504 13 - 13651311 CCAGGGCAGGAGC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3145378 13 - 7082604 CCAGGGCAGGAGT i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3374017 13 + 7587287 CCAGAGCAGGAGC i aotNan1.NW_018509326v1 I 316 C 0 s otoGar3.GL873658 2582424 13 + 5252280 CCCGCTCAGCCCT i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 666395 7160 + 2232271 I e cebCap1.NW_016107454v1 631460 867 + 5243153 I e calJac3.chr14 3501219 0 - 108792865 C a score=436395.000000 s hg38.chr2_KI270769v1_alt 99607 45 + 120616 CCCCAGGCAC------AGGCTCCTTCACATtgggcttctgtcacttgtaac s panTro5.chr2A 3562107 45 + 111504155 CCCCAGGCAC------AGGCTCCTTCACATtgggcttctgtcacttgtaac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3422375 45 + 114371477 CCCCAGGCAC------AGGCTCCTTCACATtgggcttctgtcacttgtaac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300899 45 + 637652 CCCCAGGCAC------AGGCTCCTTCACATtgggcttctgtcacttgtaac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096302 45 + 81552678 CCCCAGGCAC------AGTCTCCTTCACATtgggctcctgtcacttgtaac i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3360432 45 + 108979918 CCCCGGGCAC------AGGCTCCTTCACAttgggcttctgtcacttgcaac i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5072569 45 - 111193037 CCCCGGGCAC------AGGCTCCTTCACAttgggcttctgtcacttgcaac i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3463791 45 + 3644372 CCCCGGGCAC------AGGCTCCTTCACAttgggcttctgtcacttgcaac i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3420228 45 - 10304083 CCCCGGGCAC------AGGCTCCTTCACAttgggcttctgtcacttgcaac i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3521418 44 - 107702431 CCCC-GGCAC------AGGCTCCTTCACAttgggcttctgtcacttgcaac i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1052236 45 + 1565135 CCCTGGGCAC------AGGCTCCTTCACAttgggcttctgtcacttgcaac i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3414517 45 - 13651311 CCCCGGGCAC------AGGCTCCTTCACAttgggcttctgtcacttgcaac i colAng1.NW_012118821v1 C 0 I 363 s saiBol1.JH378218 3145391 45 - 7082604 CCCCAGGCCC------AGGCTCCTCCACATTGAGCTTCTGGCGCTTGCAAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 632327 45 + 5243153 CCCCAGGCCC------AGGCTCCTCCACATtgagcttctggtgcttgcaac i cebCap1.NW_016107454v1 I 867 C 0 s aotNan1.NW_018509326v1 3374030 45 + 7587287 CCCCAGGCCC------AGGCTCCTCCACATTGAGCTTCTGGCGCTTGCAAC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2582437 51 + 5252280 CCCCAGGCCCTGGCAGAGGCTCCTTTATGTTTGGCTTCTGTCACTTGTGAC i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 666395 7160 + 2232271 I e calJac3.chr14 3501219 0 - 108792865 C a score=3205730.000000 s hg38.chr2_KI270769v1_alt 99652 415 + 120616 ------------aaaaagagccccaactaagacaACAGAAGAGATCGTGTAA-CGACATTTCGAAGCACAGAGTCGGAATCCTGGGAAGACGAGAACGGCAATCCTGGGCAAAGCTCCAGGCAGATGC-AGGGCCAGAG-CCTCCC-TCAGGGCTCCTCCCAGGACCTCCCCCCAGGGCTCCTCCCAGGACCTCCCCCCAGGGCTCCCGGCCTCTGCAGGTTGCCTGGGACAAGAGGTCTTCCTTCCTAGTCCCTCTAACCTCTCCACT----GAGAGCACCCCATGAGCCTG---GCGCCCCAGGCACTGTGCAGGAGGGAACAGCAGGCCGGCAGCCTCTGCCCTGTGGGTCCGCACAGCCTGGGGAGCGGGGACAGAATGCACCCCCCACTGCGATCCCACCTGTCTGCCTCCATCCTTCCCCATCCACTCCGAG s panTro5.chr2A 3562152 390 + 111504155 ------------aaaaagagccccaactaagacaACAGAAGAGATCGTGTCA-CGACATTTCGAAGCACAGAGTCGGAATCCTGGGAAGACGAGAACGGCAATCCTGGGCAAAGCTCCAGGCAGATGC-GGGGCCAGAG-CCTCCC-T-------------------------CAGGGCTCCTCCCAGGGCCTCCCCCCAGGGCTCCCGGCCTCTGCAGGTTGCCTGGGACAAGAGGTCTTCCTTCCTAGTCCCTCTAACCTCTCCACT----GAGAGCACCCCATGAGCCTG---GCGCCCCAGGCACTGTGCAGGAGGGAACAGCAGGCCGGCAGCCTCTGCCCTGTGGGTCCACACAGCCTGGGGAGCGGGGACAGAACGCACCCCCCGCTGCGATCCCACCTGTCTGCCTCCATCCTTCCCCATCCACTCCGAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3422420 415 + 114371477 ------------aaaaagagccccaactaagacaACAGAAGAGATCGTGTCA-CGACATTTCGAAGCACAGAGTCGGAATCCTGGGAAGACGAGAACGGCAATCCTGGGCAAAGCTCCAGGCAGATGC-GGGGCCAGAG-CCTCCC-TCAGGGCTCCTCCCAGGGCCTCCCCCCAGGGCTCCTCCCAGGGCCTCCCCCCAGGGCTCCCGGCCTCTGCAGGTTGCCTGGGACAAGAGGTCTTCCTTCCTAGTCCCTCTAACCTCTCCACT----GAGAGCACCCCATGAGCCTG---GCGCCCCAGGCACTGTGCAGGAGGGAACAGCAGGCCGGCAGCCTCTGCCCTGTGGGTCCACACAGCCTGGGGAGCGGGGACAGAACGCACCCCCCGCTGCGATCCCACCTGTCTGCCTCCATCCTTCCCCATCCACTCCGAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 300944 390 + 637652 ------------aaaaagagccccaactaagacaACAGAAGAGATCGTGTAA-CGACATTTCGAAGCACAGAGTCGGAATCCTGGGAAGACGAGAACGGCAATCCTGGGCAAAGCTCCAGGCAGATGC-AGGGCCAGAG-CCTCCC-T-------------------------CAGGGCTCCTCCCAGGGCCTCCCCCCAGGGCTCCCGGCCTCTGCAGGTTGCCTGGGACAAGAGATCTTCCTTCCTAGTCCCTCTAACCTCTCCACT----GAGAGCACCCCATGAGCCTG---GCGCCCCAGGCACTGTGCAGGAGGGAACAGCAGGCAGGCAGCCTCTGCCCTGTGGGTCTGCACAGCCTGGGGAGTGGGGACAGAATGCACCCCCCGCTGCGATCCCACCTGTCTGCCTCCATCCTTCCCCATCCACTCCGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096347 390 + 81552678 ------------aaaaagagccccaactaagacaACAGAAGAGATCGTGTCA-CGACATTTCGAAGCACAGAGTTGGAATCCTGGGAAGACGGGAACGGCAATCCTGGGCAAAGCTCCAGGTGGATGC-GGAGCCAGTGCCCTCCC-T-------------------------CAGGGCTGCTCCCAGGGCCTCCCCCCAGGGCTCCCAGCCTCTGCAGGTTGCCTGGGACAAGAGGTCTTCCTTCCTAGTCCCTCTAACCTGCCCACT----GAGTGCACCCCATGAACCTG---GTGCCCCAGGCACTGTGCAGGAGGGGACAGCAGGCCAGCAGCCTCTGCCCTGTGGGTCCACACAGCCTGGGGAGCGGGCACAGAATGCACCTCCCGCTGCGAT-CCACCTGCCTGCCTCCATCCTTCCCCATCCATTCCGAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3360477 394 + 108979918 ------------agaaagagccccaactaagacaACAGAAGAGATCATGTCA-CAACATTTCGAAGCACAGAGTCGGAATCCTGGGAAGACGGGAACGGCAATCCGGAGCAAAGCTCCAGATGGATGC-GGAGCCAGAGCCCTCCC-T-------------------------CAGGGCTCCTCCCAGGGCCTCCCCCCGGGGCTCCCTGCCTCTGCAGGTTGCCTGGGACAAGAGGTCTTCCTTCCTAGTCCCTCTAACCTGCCCACTAACAGAGTGCACCCCATGAGCCTG---GTGCCCCGGGCACCATGCAAGAGGGGAGAGCAGGCCAGCAGCCTCTGCCCAGTGGGTCTGCACAGCCTGGGGAGTGGGGACAGAATGCACCCCC-GCTACGATCCCACCTGCCTGCCTCCATCCTTCCCCATCCATTCCAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5072614 398 - 111193037 ------------agaaagagccccaactaagacaACAGAAGAGATCATGTCA-CAACATTTCGAAGCACAGAGTCGGAATCCTGGGAAGACGGGAACGGCAATCCGGGGCAAAGCTCCAGATGGATGC-GGAGCCAGAGCCCTCCC-T-------------------------CAGGGCTCCTCCCAGGGCCTCCCCCCGGGGCTCCCTGCCTCTGCAGGTTGCCTGGGACAAGAGGTCTTCCTTCCTAGTCCCTCTAACCTGCCCACTAACAGAGTGCACCCCATGAGCCTGGTTGTGGGGAGGGGACCATGCAAGAGGGGAGAGCAGGCCAGCAGCCTCTGCCCAGTGGGTCTGCATAGCCTGGGGAGTGGGGACAGAATGCACCCCCTGCTACGATCCCACCTGCCTGCCTCCATCCTTCCCCATCCATTCCAAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3463836 395 + 3644372 ------------agaaagagccccaactaagacaACAGAAGAGATCATGTCA-CAACATTTCGAAGCACAGAGTCGGAATCCTGGGAAGACGGGAACGGCAATCCGGGGCAAAGCTCCAGATGGATGC-GGAGCCAGAGCCCTCCC-T-------------------------CAGGGCTCCTCCCAGGGCCTCCCCCCGGGGCTCCCTGCCTCTGCAGGTTGCCTGGGACAAGAGGTCTTCCTTCCTAGTCGCTCTAACCTGCCCACTAACAGAGTGCACCCCATGAGCCTG---GTGCCCCGGGCACCATGCAAGAGGGGAGAGCAGGCCAGCAGCCTCTGCCCAGTGGGTCTGCATAGCCTGGGGAGTGGGGACAGAATGCACCCCCCGCTATGATCCCACCTGCCTGCCTCCATCCTTCCCCATCCATTCCAAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3420273 395 - 10304083 ------------agaaagagccccaactaagacaACAGAAGAGATCATGTCA-CAACATTTCGAAGCACAGAGTCGGAATCCTGGGAAGACGGGAACGGCAATCCAGGGCAAAGCTCCAGATGGATGC-GGAGCCAGAGCCCTCCC-T-------------------------CAGGGCTCCTCCCAGGGCCTCCCCCCGGGGCTCCCTGCCTCTGCAGGTTGCCTGGGACAAGAGGTCTTCCTTCCTAGTCCCTCTAACCTGCCCACTAACAGAGTGCACCCCATGAGCCTG---GTGCCCCGGGCACCATGCAAGAGGGGAAAGCAGGCCAGCAGCCTCTGCCCGGTGGGTCTGCATAGCCTGGGGAGTGAGGACAGAATGCACCCCCTGCTACGATCCCACCTGCCTGCCTCCATCCTTCCCCATCCATTCCAAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3521462 391 - 107702431 ------------agaaagagccccaactaagacaACAGAAGAGATCGTGTCG-CAACATTTTGAAGCACAGAGTCGGAATCCTGGGAAGACGGGAACGGCAATCCAGGGCAAAGCTCTAGATGGATGC-GGAGCCAGAGCCCTCCC-T-------------------------CAGGGCTCCTCCCAGGGCCTCCCCCCGGGGCTCCCTGCCTCTGCAGGTTGCCTGGGACAAGAGGTCTTCCTTCCTAGTCCCTCTAACCTGCCCACT----GAGTGCACCCCATAAGCCTG---GTGCCCCGGGCACCATGCAAGAGGGGAGAGCAGGCCAGCAGCCTCTGCCCGGTGGGTCTGCATGGCCTGGGGAGTGGGGACAGAATGCACCCCCTGCTACGATCCCACCTGCCTGCCTCCATCCTTCCCCATCCATTCCAAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1052281 395 + 1565135 ------------agaaacagccccaactaagacaACAGAAGAGATCATGTCA-CAACATTTCGAAGCACAGAGTCGGAATCCTGGGAAGACGGGAACAGCAATCCGGGGCAAAGCTCCAGATGGATGC-GGAGCCAGAGCCCTCCC-T-------------------------CAGGGCTCCTCCCAGGGCCTCCCCCCGGGGCTCCCTGCCTCTGCAGGTTGCCTGGGACAAGAGGTCTTCCTTCCTAGTCCCTCTAACCTGCCCACTAACAGAGTGCACCCCATGAGCCTG---GTGCCCCGGGCACCATGCAAGAGGGGAGAGCAGGCCAGCAGCCTCTGCCCGGTGGGTCTGCATAGCCTGGGGAGTGGGGACAGAATGCACCCCCCGCTACGATCCCACCTGCCTGCCTCCATCCTTCCCCATCCATTCCAAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3414925 392 - 13651311 ------------aaaaaGAGCCCCAACTAAGACAACAGAAGAGATCGTGTCA-CAACATTTCGAAGCACAGAGTCGGAATCCTGGGAAGACGGGAACAGCAAT-CGGGGCAAAGCTCCAGATGGATGC-GCAGCCAGAGCCCTCCC-T-------------------------CAGGGCTCCTCCCGGGGCCTCCCCCCGGGGCTCCCTGCCTCTGCAGGTTGCCTGGGACAAGAGGTCTTCCTTCCTAGTCCCTCTAACCTGCCCACTAACAGAGTGCACCCCATGAGCCTG---GTGCCCCGGGCACCGTGCAAGAGGGGACAGCAGGCCAGCA-CCTCTGCCCAGTGGGTCCGCACAGCCTGGGGAGTGGGGACAGAATGCACCCCC-CCCACGATCCTACCTGCCTGCCTCCATCCTTCCGTATCCATTCCAAG i colAng1.NW_012118821v1 I 363 C 0 s saiBol1.JH378218 3145436 387 - 7082604 ------------AAAAAGAGCCCCAGTTAAC---ACAGAAGAGATCGTGTCA-CAACGTTTCAAAGCAG--AGTCGGACTCCTGGGCAAACAGGAATGGCAATTCTAGGCAAAGCCCCAGGTGGACAG-GGAGCCAGAGCCCTCCC-T-----------------------CCCGGGGCTGCTCCCAGGGCCT---CCCGGGGCTCGTGGACTCTGCAGGTTCCCTGGGACTAGAAGTCCTGCTTCCGAGTCCCTTTAACCTGCTCAGTAACTGAGTGTACCCCAGGAGCCGG---GTGCCCTGGGCACCGTGCAGGATGGGACAGCAGGCTGGCAGCCTCTGCCCTGCGGGTGGGCAGAGCCTGAGGGGCGGGAACAGAATGCACCCCCCGCTGCAATACCTCCAGCCTGCCT--GTCCTCCCCTATCCACTCCGAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 632372 386 + 5243153 ------------aaaaagagccccaactaag---acaGAAGAGATCGTGTCA-CAACGTTTCAAAGCAC--AGTCGGAATCCTGGGCAGACGGGAACAGCAATCCTAGGCAAAGCCCCAGGCGGACAG-GAAGCCAGAGTCCTCCC-T-----------------------CCT-GGCCTCCTCCCAGGGCCT---CCCAGGTCTCACAGCCTCTGCAGGTTCCCTGGGACTAGAAGTCCTCCTTCCTAGTCCCTCTAACCTGCCCAGTAACTGACTGCACCCAAGGAGACGG---GTGCCCTGGGCACCATGCAGGAGGGGACAGCAGGCCAGCAGCCTCTGCCCTGCAGGTGGGCACAGCCTGGGGAGCGGGAACAGAACGCACCCCCCGCTGCAATACCACCAGCCTGCCT--GTCCTCCCCCATCCACTCCGAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3374075 389 + 7587287 ------------AAAAAGAGCCCCAGCTAAG---ACAGAAGAGATCCTGTCA-CAACGTTTCAAAGCAC--AGTCGGAATCCTGGGCAGACGGGAACAGCAATCCTAGGCAAAACCCCAGGCGGACAG-GGAGCCAGAGCCCTCCC-T-----------------------CCCAGGGCTCCTCCCAGGGCCT---CCCGGGGCTCTCGGCCTCTGCAGGTTCCCTGGGACTAGACGTCCTCCTTCCTAGTCCCTCTAACCTGTGCAGTACCTGAGTGCACCCCAGGAGCCTG---GTGCCCTGGGCACCGTGCAGGAGGGCACAGCAGGCCGGCAGCCTCTGCCCTGCGGGTGGGCACAGCCTGGGGAGCGGGAACAGAACGCACCCCCCGCTGCAATACCACCAGCCTGCCTCCGTCCTCCCCCATCCACTCCGAG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2582488 328 + 5252280 CAAAAAAAAAAAAAAAAATGCCCTAATTATG-------AAGAGATCACATCAGGAATGTTTAAAAGCACAGAAT-------------------------------------------CAGGCAGACACAGGAGCCA--GCCCTCCCAT-------------------------CAA--CACCTCCCGAGGCCACTGACCA---------GCCTCTGCAAGCAATCGGGGCAGAGGAGCTATTCCCACTCATTCCTCCCTCCCACTCCACGCCTCAGAGCACCCAGCGG--CCA---GCACCACGG----CATGCAGGATGGACCACAGGACCCACTGCTCCCGTCCTGCAGGTGTGTGCAGCCTGG---GTGGGCACCGAG---GCCCCCTGCAGCG-------CCATCTGCCTCTGCCCCTCACTTCCCGCGCTAAG i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 666395 7160 + 2232271 I e calJac3.chr14 3501219 0 - 108792865 C a score=1045603.000000 s hg38.chr2_KI270769v1_alt 100067 187 + 120616 GCCGGACGTTGCCTGACTAGGACAGCTCTTCTCCTATTTCT-CAGATGTCTGTTCCATTGGTTTCTCTTTGTCAAGATGTCTGATCCACCGTCAGCAGTTTCTTGAGT-----GGAGGTGAGCACTGTGGTTAGGGAGTCACACTTAG-GCACcagttacctacgccatgtaacaacactgctctgaaacttgt s panTro5.chr2A 3562542 187 + 111504155 GCCGGGCGTTGCCTGACTAGGACAGCTCTTCTCCTATTTCT-CAGATGTCTGTTCCATTGGTTTCTCTTTGTCCAGATGTCTGATCCACCGTCAGCAGTTTCTTGAGT-----GGAGGTGAGCACTGTGGTTAGGGAGTCACACTTAG-GCACcagttacctacgccatgtaacaacactgctctgaaacttgt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3422835 187 + 114371477 GCCGGGCGTTGCCTGACTAGGACAGCTCTTCTCCTATTTCT-CAGATGTCTGTTCCATTGGTTTCTCTTTGTCCAGATGTCTGATCCACCGTCAGCAGTTTCTTGAGT-----GGAGGTGAGCACTGTGGTTAGGGAGTCACACTTAG-GCACcagttacctacgccatgtaacaacactgctctgaaacttgt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 301334 187 + 637652 GCCGGGCGTTGCCTGACTAGGACAGCTCTTCTCCTATTTCT-CAGATGTCTGTTCCATTGGTTTCTCTTTGTCAAGATGTCTGATCCACCGTCAGCAGTTTCTTGAGT-----GGAGGTGAGAACTGTGGTTAGGGAGTCACACTTAG-GCACCagttacctacgccatgtaacaacactgctctgaaacttgt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096737 187 + 81552678 GGCGGGCACTGCCTGACTAGGACAGGTCTTCACCTATTTCT-CAGATGTCTGTTCCATTGGTTTCTCTTTCTCAAGATGTCTGATCCACTGTCAGCAGTTTCTTGAGT-----GGAGGTGAGCACTGTGGTTAGGGAGTCACACTTAG-GCACCagttacctacaccatgtaacaacactgctcggaaacttgt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3360871 183 + 108979918 GCCAGGCATTGCCTGACTAGGACAGCTCTACTCCTATTTCT-CAGACGTCTGTTCCATTAGTTTCTCTTTCTCAAGATGTCTGATCCACCATCAGCACTTTCTTGAGT-----GGAGGTGAGCACTATGGTTAGGGAGTCACACTTAG-ACACcagtta-ctacgctgtgt---aacactgctctgaaacttgt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5073012 183 - 111193037 GCCAGGCATTGCCTGACTAGGACAGCTCTACTCCTATTTCT-CAGACGTCTGTTCCATTAGTTTCTCTTTCTCAAGATGTCTGATCCACCATCAGCACTTTCTTGAGT-----GGAGGTGAGCACTATGGTTAGGGAGTCACACTTAG-ACACCagtta-ctacgctgtgt---aacactgctctgaaacttgt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3464231 183 + 3644372 GCCAGGCATTGCCTGACTAGGACAGCTCTACTCCTATTTCT-CAGACGTCTGTTCCATTAGTTTCTCTTTCTCAAGATGTCTGATCCACCATCAGCACTTTCTTGAGT-----GGAGGTGAGCACTATGGTTAGGGAGTCACACTTAG-ACACCagtta-ctacgctgtgt---aacactgctctgaaacttgt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3420668 183 - 10304083 GCCAGGCATTGCCTGACTAGGACAGCTCTACTCCTATTTCT-CAGACGTCTGTTCCATTAGTTTGTCTTTCTCAAGATGTCTGATCCACCATCAGCACTTTCTTGAGT-----GGAGGTGAGCACTATGGTTAGGGAGTCACACTTAG-ACACCagtta-ctacgctgtgt---aacactgctctgaaacttgt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3521853 183 - 107702431 GCCAGGCATTGCCTGACTAGGACAGCTCTACTCCTATTTCT-CAGACGTCTGTTCCATTAGTTTGTCTTTCTCAAGATGTCTGATCCACCGTCAGCACTTTCTTGAGT-----GGAGGTCAGCACTATGGTTAGGGAGTCACACTTAG-ACACCagtta-ctatgctgtgt---aacactgctctgaaacttat i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1052676 181 + 1565135 GCCAGGCATTGCCTGACTAGGACAGCTCTACTCCTATTTCT-CAGATGTCTGTTCCATTAGTTTCTCTTTCTCAAGATGTCTGATCCACCATCAGCACTTTCTTGAGT-----GGAGGTGAGCACTATG--TAGGGAGTCACACTTAG-ACACCagtta-ctacgctgtgt---aacactgctctgaaacttgt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3415317 183 - 13651311 GCCAGGCACTGCCTGACTAGGACAGCTCTACTCCTGTTTCT-CAGACGTCCGTTCCATTAGTTTCTCTTTCTCTGGATGTCTGATCCACCGTCAGCACCTTGTTGAGT-----GGAGGTGAGCACTACGGTTAAGGAGTCACACGTAG-ACACCGGTTA-CTACgctgcgt---aacgctgctctgaaacttgt i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2582816 164 + 5252280 GCCTGGTGCAGCT---------CAAGTCCTGTCTTATTTCTGCAG--GTCTATTCCATTGCTTTGTGTTTCTCAAGATCTTTGAGCCACTGATAGTGGTCCTTTGAGGTGAAAGGAGGGGAGCA-TATGGCTCGGGATTCACGCTTGGCACACCCATTATCTATGCTGTGT---AACAA--------------- i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e saiBol1.JH378218 3145823 0 - 7082604 C e dasNov3.JH580157 666395 7160 + 2232271 I e cebCap1.NW_016107454v1 632758 0 + 5243153 C e aotNan1.NW_018509326v1 3374464 0 + 7587287 C e calJac3.chr14 3501219 0 - 108792865 C a score=3575237.000000 s hg38.chr2_KI270769v1_alt 100254 428 + 120616 gccttatgacaggaacatacattctcgcctgcagtctccgggttagctgggtggtg-tggggctctcctgaggttgccctcaaggtgacggctggggctgcatcatctgaaggctcaacgggggctggaggacctgcttccacacaccc--cgagccagcagcactgctggcagaggcctcagacctccccagagagctgcacaagtgtcctgcggacgtggcagccagcttccccagagcgcaatgtctgagagcaagcag----gaaactacatgccaacagaggccacccacagccacctcagccgcttcctactcattagaaacaagtgaccaac-agagaccatgctgaaggggaggataaattgag-----------ggagatcgtcagaaa-cttgtggttgtattttttaaaacaacACACTT--AATTTTT-TAAAAAATTG s panTro5.chr2A 3562729 427 + 111504155 gccttacgacacgaacatacattctcacctgcggtctccgggttagctgggtggtg-tggggctctcctgaggttgccctcaaggtgacggctggggctgcatcatctgaaggctcaacgggggctggaggacctgcttccacacaccc--cgagccagcagcactgctggcagaggcctcagacctccccagagagctgcacaagtgtcctgcggacgtggcagccagcttccccagagcgcaatgtctgagagcaagcag----gaaactacaTGCCAACAGAGGCCACCCACAGCCACCTCAGCCGCTTCCTACTCATTAGAAACAAGTGACCAAC-AGAGACCGTGCTGAAGGAGAGGATAAATTGAG-----------GGAGATCGTC-GAAA-CTTGTGGTTGTATTTTTTAAAACAACACACTT--AATTTTT-TAAAAAATTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3423022 427 + 114371477 gccttacgacacgaacatacattctcacctgcggtctccgggttagctgggtggtg-tggggctctcctgaggttgccctcaaggtgacggctggggctgcatcatctgaaggctcaacgggggctggaggacctgcttccacacaccc--cgagccagcagcactgctggcagaggcctcagacctccccagagagctgcacaagtgtcctgcggacgtggcagccagcttccccagagcgcaatgtctgagagcaagcag----gaaactacaTGCCAACAGAGGCCACCCACAGCCACCTCAGCCGCTTCCTACTCATTAGAAACAAGTGACCAAC-AGAGACCGTGCTGAAGGAGAGGATAAATTGAG-----------GGAGATCGTC-GAAA-CTTGTGGTTGTATTTTTTAAAACAACACACTT--AATTTTT-TAAAAAATTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 301521 428 + 637652 gccttacgacaggaacatacattctcacctgcggtctccaggttagctgggtggtg-tggggctctcctgaggttgccctcaaggtgacggttggggctgcatcatctgaaggctcaacgggggctggaggacctgcttccacacaccc--cgagccagcagcactgctggcagaggcctcagacctccccagagagctgcacaagtgtcctgcggacgtggcagccagcttccccagagcgcaatgtctgagagcaagcag----gaaactacaTGCCAACAGAGGCCACCCACAGCCACCTCAGCCGCTTCCTACTCATTAGAAACAAGTGACCAAG-AGAGACTATGCTGAAGGGGAGGATAAATTGAG-----------GGAGATCGTCAGAAA-CTTGTGGTTGTATTTTTTAAAACAACACACTT--AATTTTT-TAAAAAATTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3096924 421 + 81552678 gcctgaagacaggaacatacattctcgcctgcagtctctgggttagctgggcggtg-tggatttctcctgag---gccctcaaggtgacagctggggctgcatcatctgaaggctcaacgggggctggaggacctgcttccacacaccc--ccagccagcagcattgctggcagaggcctcagacctccccagagagctgcacaagtatcctgcggacgtggcagccggcttccccagagcgcagtgtccgagagcaagcag----gaaactacatgccaacagaggccacccacggccacctcagccgcttcctactcgttagaaacaagtgaccaag-agagaccatgctgaaggggaggataaatggag-----------ggagatcgtcagaaa-cttgtggatgtatttttaaaaacaacac------aATTTTT-AAAAAAATTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3361054 430 + 108979918 gccttacaacaggaacatacattctcacctgtggtctctgggttagctgggcagtgctggggctctcctgaggttgccctcaaggtgacggctagggctgcatcatctgaaggctcaactggggctggaggacctgcttccacacacct--tcagccagcagcattgctgggagaggcctcagacctccccagagagctgcgcaagtgtcctgcagatgtggcagccagcttctccagagtgcagcatccaagagcaagcag----gaaaccacaTGCCAACAGAAGCCACCCACGGCCACCCCAGTCGCTTCCTACTCATTAAAAACAAGTGACCATG-AGTGACCATGCTGAAGGGGAGGATAAACTGAG-----------GGAGATCGTCAGAAA-CTTGTGGATGTATTTTTAAAAACAATACACTT--AATTTTTAAAAAAAATTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5073195 430 - 111193037 gccttacaacaggaacatacattctcacctgtggtctctgggttagctgggcagtgctggggctctcctgaggttgccctcaaggtgacggctagggctgcatcatctgaaggctcaactggggctggaggacctgcttccacacacct--tcagccagcagcattgctgggagaggcctcagacctccccagagagctgcgcaagtgtcctgcagatgtggcagccagcttctccagagtgcagcatccaagagcaagcag----gaaaccacatgccaacagaagccacccacggccaccccagtcgcttcctactcattaaaaacaagtgaccatg-agtgaccatgctgaaggggaggataaactgag-----------ggagatcgtcagaaa-cttgtggatgtatttttaaaaacaatacaCTT--AATTTTTAAAAAAAATTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3464414 430 + 3644372 gccttacaacaggaacatacattctcacctgtggtctctgggttagctgggcagtgctggggctctcctgaggttgccctcaaggtgacggctagggctgcatcatctgaaggctcaactggggctggaggacctgcttccacacacct--tcagccagcagcattgctgggagaggcctcagacctccccagagagctgcgcaagtgtcctgcagatgtggcagccagcttctccagagtgcagcatccaagagcaagcag----gaaaccacaTGCCAACAGAAGCCACCCACGGCCACCCCAGTCGCTTCCTACTCATTAAAAACAAGTGACCATG-AGTGACCATGCTGAAGGGGAGGATAAACTGAG-----------GGAGATCGTCAGAAA-CTTGTGGATGTATTTTTAAAAACAATACACTT--AATTTTTTTAAAAAATTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3420851 429 - 10304083 gccttacaacagaaacatacattctcacctgtggtctctgggttagctgggcagtgctggggctctcctgaggttgccctcaaggtgacggctagggctgcatcatctgaaggctcaactggggctggaggacctgcttccacacacct--tcagccagcagcattgctgggagaggcctcagacctccccagagagctgcgcaagtgtcctgcagatgtggcagccagcgtctccagagtgcagcatccaagagcaagcag----gaaaccacaTGCCAACAGAAGCCACCCACGGCCACACCAGTCGCTTCCTACTCATTAAAAACAAGTGACCACG-AGCGACCATGCTGAAGGGGAGGATAAACTGAG-----------GGAGATCGTCAGAAA-CTTGTGGATGTATTTTTAAAAACAATACACTT--AATTTTT-TAAAAAATTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3522036 429 - 107702431 gccttacaacaggaacatatattctcacctgtggtctctgggttagctgggcagtgctggggctctcctgaggttgccctcaaggtgtcggctagggctgcatcatctgaaggctcaactggggctggaggacctgcttccacacacct--tcagccagcagcattgctggcagaggcctcagacctccccagagagctgcgcaagtgtcctgcagatgtggcagccagcgtctccagagtgcagcatccaagagcaagcag----gaaaccacatgccaacagaggccacccacggccaccccagtcacttcctactcattaaaaacaagtgagcacg-agagaccatgctgaaggggaggataaactgag-----------ggatatcgtcagaaa-cttgtggatgtatttttaaaaacaatacaCTT--AATTTTT-TAAAAAATTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1052857 429 + 1565135 gccttacaacaggaacatacattctcacctgtggtctctgggttagctgggcagtgctggggctctcctgaggttgccctcaaggtgacggctagggctgcatcatctgaaggctcaactggggctggaggacctgcttccacacacct--tcagccagcagcattgctgggagaggcctcagacctccccagagagctgcgcaagtgtcctgcagatgtggcagccagcgtctccagagtgcagcatccaagagcaagcag----gaaaccacaTGCCAACAGAAGCCACCCACGGCCACCCCAGTCGCTTCCTACTCATTAAAAACAAGTGACCACG-AGCGACCATGCTGAAGGGGAGGATAAACTGAG-----------GGAGATCATCAGAAA-CTTGTGGATGTATTTTTAAAAACAATACACTT--AATTTTT-TTAAAAATTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3415500 426 - 13651311 gccttgcaacaggaacatacattctcacctgcggtctctggctcagctgggcagtgctggggctctcctgaggtcgccctcaaggtgacggctagggctgcatcatctgaaggctcaactggggctggaggacctgcttccacacacct--tcagccagcagcattgctggccgaggcctcagacctccccagagagctgcgcaagtgtcctgcagatgtggcagccagcttctccagagtgcagcatccaagagcaagcag----gaaaccacatgccaacagaggccacCCACGGCCACCCCAGTCGCTTCCTACTCATTAAAAACAAGTGACCACG-AGAGACCATGCTGAAGGGGAGGAAAAACTGAG-----------GGAGATCATCAGAAA-CTTGTGGATGTATTTTTAAAAACAAGACACTT--AATTTTT-TAAAAAA--- i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3145823 409 - 7082604 GCCTTACAACAGGAACATACCTTCTCGCCTGCGGTCTCTgggttagctgggcagtgccagggctctcctgaggttgccctcaaggtgatggctggggctgcatcatctgaaggctcgactggggctggagaac---cTTTCACACACCTGGCGGGCCAGCAGCACTGTGAGCAG-------Agaccttcccagagagctgcgtgagcgtgc--------cggcagccagcttccccagcacgcagtatccgaagccaagcag----gaaaccatatgtcaacagaggccacccacggccacctcagccacttcctattcattagaagcaagtgagcaag-agagaccatgctgagggggaggagaGAAGGAG-----------GGAGAGCGTCAGAAA-CGGGTGGGTGTATTTTTAAAAGCAACAC------AATTTTT-TTTTTAATTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 632758 418 + 5243153 GCCTTACAACAGGAACAGACATTCTCGCCTGTAGTCTCTgggttagctgggcagtgccaggactctcctgaggttgccctcaaagtgatggctggggctgcatcatctgaaggctcaaccggggctggagaacctgctttcacacacctggccggccagCAGCACTGTGAGCAG-------Agaccttcccagagagctgcacgagcgtgc--------tggcagccagcttccccagagcacagtatccaaaggcaagcag----gaaaccgtgtgccaacagaggccacccacggccacctcagctgcttcctactcattagaagcaagtgagcaag-agagaccatgctgaaggggaggagaGACGGAG-----------GGAGAGCGTCAGAAA-CTGGTGGGTGTATTTTTAAAAACAACACACTTTTAATTTTT-TTTTTAATTG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3374464 416 + 7587287 GCCTTACAACAGGAACATACATTCTCGCCTGCGGTCTCTgggttagctgggcggtgccagggctctcctgaggttgccctcaagttgatggcttgggctgcatcatctgaaggctcgactggggctggagaacctgctttcacacacctggccggccagCAGCAGTGCGAGCAG-------Agaccttcccagagagctgcataagcatgc--------tggcagccagcttccccagagcgcagtatccgaaggcaagcag----gaaactacgtgtcaacagaggccacccatggccacctcagccacttcctactcgttagaagcaagtgagcaag-agagaccatgctgaaggggaggagagacggag-----------ggagagcgtcagaaa-ctggtgggtgtattttttaaaacaacACACTT--AATTTTT-TTTTAAATCA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2582980 387 + 5252280 -------------AATGTACCTTAGTGCCT--AGTTTCcgggtcagct-ggtggtgctgggtctcctgtgaggttgcagcaaagatgtcatc-agggctgcgtca-ctgatggctggact-ggcttggagggcctgc-tccACACCCGG--CCAGCGAGGAGT-------GGAGAGCCTGCA-ACCGCCCCACAGGGCTGCGCCAGCCTCCTCTGGGCACAGAGCCTGGCTTCCCCTGGGCCTGCCATGCAAGAGACAGGGGGTGTGGGACCACCTGGTGACA-ATGCca--cacagtccctcctgccaccccctac----------aaagtcactaaatggagcccacactcaagaggagaa-gaactgggctccatcttttaaggattgtcaaaaagcttgtggacaaattttTTAAACAAACATACTT-------------------- i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 666395 7160 + 2232271 I e calJac3.chr14 3501219 0 - 108792865 C a score=975430.000000 s hg38.chr2_KI270769v1_alt 100682 106 + 120616 TTGTCATTTCACTGGATTTGGGGCACTGGGGAGACTGACCCACATCTTCTCCTCCACCACCCAGATTCCTATCATGTGCTGATCTGAACGTTTAATTTTCAGAAAG s panTro5.chr2A 3563156 105 + 111504155 GTGTCATTTCACT-GATTTGGGGCACTGGGGAGACTGACCCACATCTTCTCCTCCAACACCCAGATTCCTATCATGTGCTGATCTGAACGTTTAGTTTTCAGAAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3423449 105 + 114371477 GTGTCATTTCACT-GATTTGGGGCACTGGGGAGACTGACCCACATCTTCTCCTCCACCACCCAGATTCCTATCATGTGCTGATCTGAACGTTTAGTTTTCAGAAAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 301949 106 + 637652 TTGTCATTTCACTGGATTTGGGGCACTGGGGAGACTGACCCACATCTTCTCCTCCACCACCCAGATTCCTGTCATGTGCTGATCTGAATGTTTAGTTTTCAGAAAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3097345 106 + 81552678 TTGTCATTTCACTGGATTTGGGGCACTGGGGAGATTGACCCACATCTTCTCCTCCACCATCCAGATTCCTATCATGTGCTGATCTGACCATGTAGTTTGCAGAAAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3361484 103 + 108979918 TTGTCATTTCACTGGATTTGGGGCACTGGGGAGATTGACCCAAATCTT---CTCCGCCATCCAGATTCCTATCATGTGCTGATCTGAACGTTCAGTTTTCAGAAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5073625 103 - 111193037 TTGTCATTTCACTGGATTTGGGGCACTGGGGAGATTGACCCAAATCTT---CTCCGCCATCCAGATTCCTATCATGTGCTGATCTGAACGTTCAGTTTTCAGAAAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3464844 103 + 3644372 TTGTCATTTCACTGGATTTGGGGCACTGGGGAGATTGACCCAAATCTT---CTCCGCCATCCAGATTCCTATCATGTGCTGATCTGAACGTTCAGTTTTCAGAAAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3421280 103 - 10304083 TTGTGATTTCACTGGATTTGGGGCACTGGGGAGATTGACCCAAATCTT---CTCCGCTATCCATATTCCTATCATGTGCTGATCTGAACGTTCAGTTTTCAGAAAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3522465 103 - 107702431 TTGTGATTTCACTGGATTTGGGGCACTGGGGAGATTGACCCAAATCTT---CTCCGCCAACCAGATTCCTATCATGTGCTGATCTGAACGTTTAGTTTTCAGAAAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1053286 103 + 1565135 TTGTCATTTCACTGGATTTGGGGCACTGGGGAGATTGACCCAAATCTT---CTCCGCCATCCAGATTCCTATCATGTGCTGATCTGAACGTTCAGTTTTCAGAAAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3415926 103 - 13651311 TTGTCATTTCACTGGATTTGTGGCACTGGGGAGATGGACCCAAATCTT---CTCCGCCATCCAGATTCCTATCATGTGCTGATCTGAACGTTTAGTTTTCAGAAAG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3146232 106 - 7082604 CTGTCATTTCACTGGATTTGGGGCACTGGGGAGACCGGCCCACGTCTTCTCCCCAGCGATCCAGATTTCTGTCATGTGCTGATCTTAACGTCTACTTTTCAGAAAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 633176 106 + 5243153 CTGTCATTTCACTGGATTTGGGGTACTGGGGAGATTGGCCCACATCTTTTCCCCTGCTATCCAGATTCCTATCATGTGCTGATCTTAACGTTTAGTTTTCAGAAAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3374880 106 + 7587287 CTGTCATTTCACTGGATTTGGGGCACTGGGGAGACTGGCCCACGTCTTCTCCCCCACCATCCAGATTTCTACCATGTGCTGATCTTAACGTTTAGTTTTCAGAAAG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2583367 105 + 5252280 -TGTCACTTGACTGGATTTTAGGCCCTAGGGAGGTGGACTCAAGTCTTCTGCCACGTTGGTCCAATTGCCCCCGTGTGCTGGTCTTAACTGTCAGTCTGCAGGAGG i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 673555 98 + 2232271 TTGACATTTCACTAGATTTGGGACAAAGGAAGCTATGTCCTTTGTCAT------TTTGATCTAATTTCCTATCATGTGCTGATCTTAACATTT--TTTTCAGATAG i dasNov3.JH580157 I 7160 I 499 e mm10.chr12 91442604 836 - 120129022 I e calJac3.chr14 3501219 0 - 108792865 C a score=3486914.000000 s hg38.chr2_KI270769v1_alt 100788 411 + 120616 ----GAGAAAGTCTCCTCCAAGTTCTTCAGGAAATTCATCCCAATATTCATCAGATGC-TTTTAAGGAACACCAG-AAAAA--ACTCCAGGTCTGCCCTGGGGATAGCTCTGAACCCCCTGTGTGGTTTAACACACACAGAAC-TTCCCGTTGCACTGCTGACAGGTACCACGTGGGAAAGAGCTCACTGGGGTCAGCAAAGCTGGGGAAGCAAAGCTAAGCACAG-CCCCGAGGCCTC-------CAGCTGCTCCCTGCACGACGGCTCTCCCCAAGAGGG---ACTCAGAC--------TCCCAACCCATAATAGAACCCTTT--CAATGCATGGCTTCAC--AGACTAGCTTTCCTCAGAGCATGCATTGTAAAGACACCAGCCTGGAGCGTCAG-TTGGGAGTTTATCATCCAAAGACCATTAGAGGAGCAAAAATCCCC s panTro5.chr2A 3563261 416 + 111504155 GAGAGAGAAAGTCTCCTCCAAGTTCTTCAGGAAATTCATCCCAATATTCATCAGATGC-TTTTAAGGAACACCAGAAAAAA--ACTCCAGGTCTGCCCTGGGGATAGCTCTGAACCCCCCGTGTGGTTTAACACACACAGAAC-TTCCCGTTGCACTGCTGACAGGTACCACGTGGGAAAGAGCTCACTGGGGTCAGCAAAGCTGGGGAAGCAAAGCTAAGCACAG-CCCCGAGGCCTC-------CAGCTGCTCCCGGCACGACGGCTCTCCCCAAGAGGG---ACTCAGAC--------TCCCAACCCATAATAGAACCCTTT--CAATGCAGGGCTTCAC--AGACTAGCTTTCCTCAGAGCATGCATTGTAAAGACACCAGCCTGGAGCGTCAG-TTGGGAGTTTATCATCCAAAGACCATTAGAGGAGCAAAAATCCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3423554 415 + 114371477 GAGAGAGAAAGTCTCCTCCAAGTTCTTCAGGAAATTCATCCCAATATTCATCAGATGC-TTTTAAGGAACACCAG-AAAAA--ACTCCAGGTCTGCCCTGGGGATAGCTCTGAACCCCCTGTGTGGTTTAACACACACAGAAC-TTCCCGTTGCACTGCTGACAGGTACCACGTGGGAAAGAGCTCACTGGGGTCAGCAAAGCTGGGGAAGCAAAGCTAAGCACAG-CCCCGAGGCCTC-------CAGCTGCTCCCGGCACGACGGCTCTCCCCAAGAGGG---ACTCAGAC--------TCCCAACCCATAATAGAACCCTTT--CAATGCAGGGCTTCAC--AGACTAGCTTTCCTCAGAGCATGCATTGTAAAGACACCAGCCTGGAGCGTCAG-TTGGGAGTTTATCATCCAAAGACCATTAGAGGAGCAAAAATCCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 302055 412 + 637652 ----GAGAAAGTCTCCTCCAAGTTCTTCAGGAAATTCATCCCAATATTCATCAGATGCTTTTTAAGGAACACCAG-AAAAA--ACTCCAGGTCTGCCCTGGGGATAGCTCTGAACCCCTTGTGTGGTTTAACACACACAGAAC-TTCCCGTTGCCCTGCTGACAGGTACCACGTGGGAAAGAGCTCACTGGGGTCAGCAAAGCTGGGGAAGCAAAGCTAAGCACAG-CCCCGAGGCCTC-------CAGCTGCTCCCTGCACGACGGCTCTCCCCAAGACAG---ACTCAGAC--------TCCCAACCCATAACAGAACCCTTT--CAATGCATGGCTTCAC--AGACTAGCTTTCCTCAGAGCATGCATTGTAAAGACACCAGCCTGGAGCGTCAG-TTGGGAGTTTATCATCCAAAGACCATTAGAGGAGCAAAAATCCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3097451 416 + 81552678 GAGAGAGAAAGTCTCTTCCAAGTTCTTCTGGAAATTCATCCCAATATTCATCAGATGC-TTTTAAGGAACATCAG-AAAAA--ACTCCAGGTCTGCCCTGGGGATAGCTCTGAACCCCTCGTGTGGTTTAACACACAGAGAACTTTCCTGTTGCACTGCTGACAGGTACCACATGGGGAAGAGCTCACTGGGGTCAGCAAAGCTGGGGAAGCAAAGCTAAGCACGG-CCCCAAGGCCTC-------CAGCTGCTCCCGGCACCACAGCTCTCCCTGCGAGGG---ACTCAGAC--------TCCCAACCCGTAACAGAACCCTTT---AATGCATCACTTCAC--AGACTAGCTTTCCTCAGAGCACGCATTGTAAAGACACCAGCCTGGCGCATCAGTTTGGGAGTTTATCATCCAAAGACCATTAGAGGGGCAAAAATCCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3361587 411 + 108979918 GAGAGAGAAACTCTCTTCCAAGTTCTTCAGGAAATTAATCTCAATATTCATCAGATGC-TTTTAAGGAACACCAG-AAAAA--ACTCCAGGTCTGCCCTGAGGATAGCTCTGAACCCCTTGTGTGGTTTCACACACACAGAGC-TTCCCGTTGCGCTGCTGACAGGTACCACATGGGGAAGAGCTTATTGGGGTCAGCAAAGCTGGGGAAGCAAAGCTAAGCACGG--CCTGAGGCCTC-------CAGCTGCTCCCGGCACCACGGCTCTCCCCAAGAGGG---ACTCGGAC--------TCCCAACCCATAACAGAACCCTTT---AATGCATCATTTCAC--AGACTAGCTTTCCTCAGAGCATGTATTGT--AGATACCAGCCTGGAGCGTCAG-TTGGGAGTCGATCATCCAAAGACCCTTAGAGGGACAAAAATCCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5073728 412 - 111193037 GAGAGAGAAACTCTCTTCCAAGTTCTTCAGGAAATTAATCCCAATATTCATCAGATGC-TTTTAAGGAACACCAG-AAAAA--ACTCCAGGTCTGCCCTGAGGATAGCTCTGAACCCCTCGTGTGGTTTCACACACACAGAGC-TTCCCGTTGCGCTGCTGACGGGTACCACGTGGGCAAGAGCTTATTGGGGTCAGCAAAGCTGGGGAAGCAAAGCTAAGCACAG-CCCTGAGGCCTC-------CAGCTGCTCCCGGCACCACGGCTCTCCCCAAGAGGG---ACTTGGAC--------TCCCAACCCATAACAGAACCCTTT---AATGCATCATTTCAC--AGACTAGCTTTCCTCAGAGCATGTATTGT--AGATACCAGCCTGGAGCGTCAG-TTGGGAGTCGATCATCCAAAGACCCTTAGAGGGACAAAAATCCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3464947 412 + 3644372 GAGAGAGAAACTCTCTACCAAGTTCTTCAGGAAATTAATCCCAATATTCATCAGATGC-TTTTAAGGAACACCAG-AAAAA--ACTCCAGGTCTGCCCTGAGGATAGCTCTGAACCCCTCGTGTGGTTTCACACACACAGAGC-TTCCCGTTGCGCTGCTGACAGGTACCACGTGGGGAAGAGCTTATTGGGGTCAGCAAAGCTGGGGAAGCAAAGCTAAGCACGG-CCCTGAGGCCTC-------CAGCTGCTCCCGGCACCACGGCTCTCCCCAAGAGGG---ACTCGGAC--------TCCCAACCCATAACAGAACCCTTT---AATGCATCATTTCAC--AGACTAGCTTTCCTCAGAGCATGTATTGT--AGATACCAGCCTGGAGCGTCAG-TTGGGAGTCGATCATCCAAAGACCCTTAGAGGGACAAAAATCCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3421383 412 - 10304083 GAGAGAGAAACTCTCTTCCAAGTTCTTCAGGAAATTAATCCCAATATTCATCAGATGC-TTTTAAGGAACACCAG-AAAAA--ACTCCAGGTCTGCCCTGAGGATAGCTCTGAACCCCTCATGTGGTTTAACACACACAGAAC-TTCCTGTTGCACTGCTGACAGGTACCACGTGGGGAAGAGCTTATTGGGGTCAGCAAAGCTGGGGAAGCAAAGCTAAGCACGG-CCCTGAGGCCTC-------CAGCTGCTCCCGGCACCACGGCTCTCCCCAAGAGGG---ACTCAGAC--------TCCCAACCCATAACAGAACCCTTT---AATGCATCATTTCAC--AGACTAGCTTTCCTCAGAGCATGTATTGT--AGATACCAGCCTGGAGCGTCAG-TTGGGAGTCGATCATCCAAAGACCCTTAGAGGGGCAAAAATCCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3522568 412 - 107702431 GAGAGAGAAACTCCCTTCCAAGTTCTTCAGGAAATTAATCCTAATATTCATCAGATGC-TTTTAAGGAACACCAG-AAAAA--ACTCCAGGTCTGCCCTGAGGATAGCTCTGAACCCCTTGTGTGGTTTAACACAAACAGAAC-TTCCCGTTGCACTGCTGACAGGTACCACGTGGGGAAGAGCTTATTGGGGTCAGCAAAGCTGGGGAAGCAAAGCTAAGCACGG-CCCTGAGGCCTC-------CAGCTGCTCCTGGCACCACGGCTCTCCCCAGGAGGG---ATTCAGAC--------TCCCAACCCATAACAGAACCCTTT---AATGCATCATTTCAC--AGACTACCTTTCCTCAGAGCATGTATTGT--AGATACCAGCCTGGAGCGTCAG-TTGGGAGTTGATCATCCAAAGACCCTTAGAGGGGCAAAAATCCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1053389 412 + 1565135 GAGAGAGAAACTCTCTTCCAAGTTCTTCAGGAAATTAATCCCAATATTCATCAGATGC-TTTTAAGGAATACCAG-AAAAA--ACTCCAGGTCTGCCCTGAGGATAGCTCTGAACCCCTCGTGTGGTTTCACACACACAGAGC-TTCCCGTTGCGCTACTGACAGGTACCACGTGGGGAAGAGCTTATTGGGGTCAGCAAAGCTGGGGAAGCAAAGCTAAGCACGG-CCCTGAGGCCTC-------CAGCTGCTCCCAGCACCACGGCTCTCCCCAAGAGGG---ACTCAGAC--------TCCCAACCCATAACAGAACCCTTT---AATGCATCATTTCAC--AGACTAGCTTTCCTCAGAGCATGTATTGT--AGATACCAGCCTGGAGCGTCAT-TTGGGAGTCGATCATCCAAAGACCCTTAGAGGGACAAAAATCCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3416029 409 - 13651311 GAGAGAGAAACTCTCTTCCAAGTTCTTCAGGAAATTAATCCCAATATTCATCAGATGC-TTTTAAGGAACACCAG-AAAAA--ACTCCAGGTCTGCCCTGGGGATAGCTCTGAATCCTTCGTGTGGTTTAACACACACAGAAC-TTCCCGTTGCACTGCTGACAGGTACCACGTGGGGAAGAGCTTATTGGGATCAGGAAAGCTGGGGAAGCAAAGCTAAGCACGG-CCCTGAGGCCTC-------CAGCTGCTCCCGGCACCATGGCTCTCCCCAAGAGGG---ACTCAGAC--------TCCCAACCCATAACAGAACCCTTT---AATGCATCATTTCAT--AGACCAGCTTTCCTCAGAGCGTGCATTGT--AGATAC---ACTGGAGCGTCAG-TTGGGAGTTGATCATCCAAAGTCCCTTAGAGGGGCAAAAATCCCC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3146338 399 - 7082604 GGGAGAGAAACTCT-CTCCAGCTTCTTCCGGAAGTCCGTCCCAATATTCATCGGGTGC-TTTTACGTGATGCCAG--AAAA--ACTCCAGGCCCGCCCTGGGGATAGCTCTGGGCCCCACGTGTGGTTGCACACACACGGAAC-TTCACATTGCGCTGCTGACAGGTACCACCTGGGGAAGAGCTTGCTGGGGTC--------------AGCGAACCTAAGCACAGCCCCCGCGGCCTC-------CAGCCGCTCCTGGCACCATGGCTGTCCC-GCGAGGGCACATGCAGAC--------TCCCACCC--TTACAGAACCTGTT---AATGCATCAGTTCAC--ACGCCAGCTTTCCTCAGAGCATGCACTGTATAGACACAGGCCTGGAGCATCAG-CTGGGAGCTTGTCATCCACAGACACTTAGAGGGGCAAAAATCCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 633282 412 + 5243153 GACAGAGAAACTCTGTTCCGGGTTCTTCAGGAAATTCATCCCAATATTCATCGGATGC-TTTTAAGGAATGCCAG--AAAA--ACTCCAGGCCTGCCCTGGGCATAGCTCTGGACCCCACATGTGGTTTAACACACACAGAAC-TTCCCATTGCGCTGCTGACAGGTACCACACGGGGAAGAGCTTGTTGGGGTCCGCAAAGCTGGAG-AGCAAAGCTAAGCACAA-CCCCGAGGCCTG-------CAGCTGCTCCTGGCACCACGGCTGTCCC-GCAAGGACACACGCAGAC--------TCCCACCC--TTACAGAACCCGTT---AATGCATCAATTCAC--AGACCAGCTTTCCTCAGAGAATGCACTGTACAGACACAGGCCTGGGGCATCAG-CTGGGAGCTTATCATCCGCAGACCCTTAGAGGGGCAAAAATCCCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3374986 413 + 7587287 GAGAGAGAAACTCTCTTCCAGGTTCTTCAGGAAATTCATCCCAATATTCATTGGATGC-TTTTAAGGAATGCCAG--AAAA--ACTCCAGGCCTGCCCTGGGGATGGCTCTGGACCCCACGTGTGGTTTAACACACACAGAAC-TTCCCATTGCGCTGCTGACAGGTACCATGTGGGGAAGAGCTTGTTGAGGTCAGCAAAGCTGGAG-AGCAAAGCTAAGCACAG-CCCCGAGGACTG-------CAGCTGCTCCTGGCACCACGGCTGTCCC-ACGAGGGTGCATGCAGAC--------TCCCACCC-ATTACAGAACCCTTT---AATGCATCAGTTCAC--AGACCAGCTTTCCTCAGAGCATGCACTGTACAGACACAGGCCTGGAGCATCAG-CTGGGAGCTTATCATCCACAGACGCTTAGAGGGGCAAAAATCCCC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2583472 397 + 5252280 GAGGGAGAAAGTCCCCCCTAATTCCCTC------------------------AGATGC----TAACACACACCAG-AAAGAGGACTGCAGGTCT--CTGGGGGATACCTCTGA--CCCTTGCACAGTTCGGTACACACAGAAC-GTCCTGTTCTCCTGTCAGCAGGCACCATGTGGAGAAAAGCTTGTACGGTTCAGCAAAGCTGGGGAAACTAAGTTAAgcaaga-ccccatgatcttccatatgcaaatgtt-----caccacaaatctgtg-ggagggg---acacgaaagggagtggcccaaagtgacagcagaaccctttggtaatgaaccatttcacagagactagtactcctcagaacacccactggaagagcactgGCCTGGAACTTGAC-ATGGGAGTT-ACCACACCAAGGCCC-TGGGTGAGCAGGGAGCCCC i otoGar3.GL873658 C 0 I 1291 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e calJac3.chr14 3501219 0 - 108792865 C a score=97112.000000 s hg38.chr2_KI270769v1_alt 101199 10 + 120616 ACCTGTCACC s panTro5.chr2A 3563677 10 + 111504155 ACCTGTCACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3423969 10 + 114371477 ACCTGTCACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 302467 10 + 637652 ACCTGTCACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3097867 10 + 81552678 ACCTGTCACT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3361998 10 + 108979918 ACCTGTCACT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074140 10 - 111193037 ACCTGTCACT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3465359 10 + 3644372 ACCTGTCACT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3421795 10 - 10304083 ACCTGTCACT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3522980 10 - 107702431 ACCTGTCACT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1053801 10 + 1565135 ACCTGTCACT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3416438 10 - 13651311 ACCTGTCACT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3146737 10 - 7082604 ACCTGTCACT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 633694 10 + 5243153 ACCTGTCACT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3375399 10 + 7587287 ACCTGTCACT i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I e calJac3.chr14 3501219 0 - 108792865 C a score=240870.000000 s hg38.chr2_KI270769v1_alt 101209 24 + 120616 CAGCTCCAAGAGTCAGAGACCCCC- s panTro5.chr2A 3563687 24 + 111504155 CAGCTCCAAGAGTCAGAGACCCCC- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3423979 24 + 114371477 CAGCTCCAAGAGTCAGAGACCCCC- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 302477 24 + 637652 CAGCTCCAAGAGTCAGAGACCCCC- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3097877 24 + 81552678 CAGCTCCAAGAGTCAAAGACCCCC- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3362008 24 + 108979918 CAGCTCCAAGAGTCAGAGACCCCC- i rheMac8.chr13 C 0 I 1 s macFas5.chr13 5074150 24 - 111193037 CAGCTCCAAGAGTCAGAGACCCCC- i macFas5.chr13 C 0 I 1 s macNem1.NW_012011978v1 3465369 24 + 3644372 CAGCTCCAAGAGTCAGAGACCCCC- i macNem1.NW_012011978v1 C 0 I 1 s cerAty1.NW_012000820v1 3421805 24 - 10304083 CAGCTCCAAGAGTCAGAGACCCCC- i cerAty1.NW_012000820v1 C 0 I 1 s chlSab2.chr14 3522990 24 - 107702431 CAGCTCCAAGGGTCAGAGACCCCC- i chlSab2.chr14 C 0 I 283 s manLeu1.NW_012104432v1 1053811 24 + 1565135 CAGCTCCAAGAGTCAGAGACCCCC- i manLeu1.NW_012104432v1 C 0 I 1 s colAng1.NW_012118821v1 3416448 24 - 13651311 CAGCTCCAAGAGTCAGAGACCCCC- i colAng1.NW_012118821v1 C 0 I 1 s calJac3.chr14 3501219 25 - 108792865 CAGTTCCAAGAGCCAGAGACCCCCC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3146747 25 - 7082604 CAGCTCCAAGAGTCAGAGACCCCCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 633704 25 + 5243153 CAGCTCCAAGAGTCAGAGACCCCCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3375409 24 + 7587287 CAGCTCCAGGAGTCAGAGA-CCCCC i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=3264157.000000 s hg38.chr2_KI270769v1_alt 101233 431 + 120616 AAGTTGCAAGGAACAGCAAAGGAGCCCCACGCCACAGGCCACTCGGCCACCTCCCTTCCGTCTCCAAGGGGGTCTGAAGACCTCAGGATGGTGCAAGCCCCAGGGAGGCCCCGGAGAGCCTTTGTTT-CCCCTTTCGGTGACTGAGCCAG-CCCTGCTGTCAGCATCCCTGACGGGTCAGGCCATCCTAGGGCCCTCGCTGGCCAGGTGGCCCTGCACACACATGCTCCCAGGTGGCACCCGGGGCCAGAGATCCCCTAATGAATTTCTTGCTGCACATAGGCTGAGTCCAGGGACTGTACATGCTCTCCTG------------------CATCTTTGCTGGGAGCTCCATCTCTGCTGGGAGCACCATGCTATATCTGCTGTGTGTCTGTGACCCTCATCTGTGACACCCTGGTTCCAGACtttattttcggtctcaacacacatgtaat s panTro5.chr2A 3563711 412 + 111504155 AAGCTGCAAGGAACAGCAAAGGAGCCCCACGCCACAGGCCACTCGGCCACCTCCCTTCCATCTCCAGGGGGG-CTGAAGACCTCAAGATGGTGCAAGCCCCAGGGAGGCCCCGGAGAGCCTTTGTTT-CCCCTTTCGGTGACTGAGCCAG-CCCTGCTGTCAGCATCCCTGATGGGTCAGGCCATCCCAGGGCCCTCGCTGGCCAGGTGGCCCTGCACACACATGCTCCCAGGTGGCACCCGGGGCCAGAGATCCCCTAATGAATTTCTTGCTGCACATAGGCTGAGTCCAGGGACTGTACATGCTCTCCTG------------------CATCTTTGCTGGGAGCC------------------CCATGCTATATCTGCTGTGTGTCTGTGACCCTCATCTGTGACACCCTGGTTCCAGACTTTATTTTCGGTCTCAACACACACGTAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424003 430 + 114371477 AAGCTGCAAGGAACAGCAAAGGAGCCCCACGCTACAGGCCACTCGGCCACCTCCCTTCCATCTCCAGGGGGG-CTGAAGACCTCAGGATGGTGCGAGCGCCAGGGAGGCCCCGGAGAGCCTTTGTTT-CCCCTTTCGGTGACTGAGCCAG-CCCTGCTGTCAGCATCCCTGACGGGTCAGGCCATCCCAGGGCCCTCGCTGGCCAGGTGGCCCTGCACACACATGCTCCCAGGTGGCACCCGGGGCCAGAGATCCCCTAATGAATTTCTTGCTGCACATAGGCTGAGTCCAGGGACTATACATGCTCTCCTG------------------CATCTTTGCTGGGAGCTCCATCTCTGCTGGGAGCACCATGCTATATCTGCTGTGTGTCTGTGACCCTCATCTGTGACACCCTGGTTCCAGACtttattttcggtctcaacacacacgtaat i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 302501 431 + 637652 AAGCTGCAAGGAACAGCAAAGGAGCCCCACGCCACAGGCCACTCGGCCACCTCCCTTCCGTCTCCAAGGGGGTCTGAAGACCTCAGGATGGTGCAAGCCCCAGGGAGGCCCCGGAGAGCCTTTGTTT-CCCCTTTTGGTGACTGAGCCAG-CCCTGCTGTCAGCATCCCTGACGGGTCAGGCCATCCCAGGGCCATCGCTGGCCAGGTGGCCCTGCACACACATGCTTCCAGGTGGCACCCGGGGCCAGAGATCCCCTAATGAATTTCTTGCTGCACATAGGCTGAGTCCAGGGACTGTAAATGCTCTCCTG------------------CATCTTTGCTGGGAGCTCCATCTCTGCTGGGAGCACCATGCTATATCTGCTGTGTGTCTGTAACCCTCAACTGTGACACCCTGGTTCCAGACtttattttcggtctcaacacacacgtaat i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3097901 430 + 81552678 AGGCCACAAGGAACAGCAAAGGAGCCCTGCGCCACAGGCTACTCAGCCACCTCCCTTCCGTCTCCAGGGGGG-CTGAAGACCTCAGGACGGTGCGAGCCCCAGGGAGGCCCTGGAGAGCCTTTGCTT-CCCCTTTTGGTAACGGAGCCAG-CCCTGCTGCCAGCATCCCTGACGGGTCAGGCCATCCCAGGGCCCTCGCGGGCCAGGTGGCCCTGCACACGCATGCTCCCAGGTGGCACCCGGGGCCAGAGATCCCCTAATGAGTTTCTTGCTGCACACAGGCTGAGTCCAGCGACCGTACATGCTCTCCCG------------------CATCTCTGCTGGGAGCTCCACCTCTGCTGGGAGCACCATGCTATATCTGCTGTGTGTCTGTGACCCCCATCTGTGACACTCTGGTTCCAGACCTTATTTTCGGTCTCAACACACACCTAAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3362033 413 + 108979918 AGGTTGCAAGGAACAGCAAGGGAGCCCTGCGCCACAGGCCACTCGGCCACCTCCCTTCCATCTCCAGGGGGA-CTGAAGACCTCAGGATGGTGCGAGCCCCAGGGAAGCCCTGGAGTGCCTTTGTTT-CCCCTTTTGGTAACTGAGCCAGCCCCTGCTGTCAGCATTCCTGACGGGTCAGGCCATCCCAGGGCCCTCGCTGGTCAGGTGGCCTTGCACACGCACGCTCCCGGGTGGCACCTGGGGCCAGAGATCCCCTAATGAATTTCTTGCTGCGCACAGGCTGCGTCCGGGGACTGTACATGCTCTCCCG------------------CATCACTGCTGGGAGCG------------------CCATGCTGTATCTGCTGTGTGTCTGTGACCCCCATCTGTGACACCCTGGTTCCATACTTTATTTTCAGTCTTGACACACATGTAAT i rheMac8.chr13 I 1 C 0 s macFas5.chr13 5074175 413 - 111193037 AGGTTGCAAGGAACAGCAAGGGAGCCCTGCGCCACAGGCCACTCGGCCACCTCCCTTCCATCTCCAGGGGGA-CTGAAGACCTCAGGAAGGTGCGAGCCCCAGGGAAGCCCTGGAGTGCCTTTGTTT-CCCCTTTTGGTAACTGAGCCAGCCCCTGCTGTCAGCATTCCTGACGGGTCAGGCCATCCCAGGGCCCTCGCTGGTCAGGTGGCCTTGCACACGCACGCTCCCGGGTGGCACCTGGGGCCAGAGATCCCCTAATGAATTTCTTGCTGCGCACAGGCTGGGTCCGGGGACTGTACATGCTCTCCCG------------------CATCACTGCTGGGAGCG------------------CCATGCTGTATCTGCTGTGTGTCTGTGACCCCCATCTGTGACACCCTGGTTCCATACTTTATTTTCAGTCTTGACACACATGTAAT i macFas5.chr13 I 1 C 0 s macNem1.NW_012011978v1 3465394 409 + 3644372 AGGTTGCAAGGAACAGCAAGGGAGCCCTGCGCCACAGGCCACTCGGCCACCTCCCTTCCATCTCCAGGGGGA-CTGAAGACCTCAGGATGGTGCGAGCCCCAGGGAAGCCCTGGAGTGCCTTTGTTT-CCCCTTTTGGTAACTGAGCCAGCCCCTGCTGTCAGCATTCCTGACGGGTCAGGCCATCCCAGGGCCCTCGCTGGTCAGGTGGCCTTGCACACGCACGCTCCCGGGTGGCACCTGGGGCCAGAGATCCCCTAATGAATTTCTTGCTGCGCACAGGCTGAGTCCGGGGACTGTACATGCTCTCCCG------------------CATCACCGCTGGGAGCG------------------CCATGCTGTATCTGCTGTG----TGTGACCCCCATCTGTGACACCCTGGTTCCATACTTTATTTTCAGTCTTGACACACATGTAAT i macNem1.NW_012011978v1 I 1 C 0 s cerAty1.NW_012000820v1 3421830 412 - 10304083 AGGTTGCAAGGAACAGCAAGGGAGCCCTGCGCCACAGGCCACTTGGCCACCTCCCTTCCATCCCCAGGGGGA-CTGGAGACCTCAGGATGGTGCGAGCCCCAGGGAAGCCCTGCAGTGCCTTTGTTT-CCCCTTTTGGTAACTGAGCCAGCCCCTGCTGTCAGCATTCCTGAC-GGTCAGGCCATCCCAGGGCCCTCGCTGGCCAGGTGGCCTCGCACACGCATGCTCCCGGGTGGCACTTGGGGCCACAGATCCCCTAATGAATTTCTTGCTGCGCACAGGCTGAGTCCGGGGACTGTACGTGCTCTCCCG------------------CATCACTGCTGGGAGCG------------------CCATGCTGTATCTGCTGTGTGTCTGTGACCCCCATCTGTGACACCCTGGTTCCATACTTTATTTTCAGTCTTGACACACACGTAAT i cerAty1.NW_012000820v1 I 1 C 0 s manLeu1.NW_012104432v1 1053836 413 + 1565135 AGGTTGCAAGGAACAGCAAGGGAGCCCTGCACCACAGGCCACTCGGCCACCTCCCTTCCATCTCCAGTGGGA-GTGGAGACCTCAGGATGGTGCGAGCCCCAGGGAAGCCCTGCAGTGCCTTTGTTT-CCCCTTTTGGTAACTGAGCCAGCCCCTGCTGTCAGCATTCCTGACGGGTCAGGCCATCCCAGGGCCCTCGCTGGCCAGGTGGCCTTGCACACGCATGCTCCCGGGTGGCACCTGGGGCCAGAGATCCCCTAATGAATTTCTTGCTGCGCACAGGCTGAGTCCGGGGACTGTACATGCTCTCCCG------------------CATCACTGCTGGGAGCG------------------CCATGCTGTATCTGCTGTGTGTCTGTGGCCCCCATCTGTGACACCCTGGTTCCATACTTCATTTTCAGTCTCGACACACACGTAAT i manLeu1.NW_012104432v1 I 1 C 0 s colAng1.NW_012118821v1 3416473 430 - 13651311 AGGTTGCCAGGAACAGCAAGTGAACCC-GCACCACAGGCCACTCGGCCACCTCCCTTCCATCTCCAGGGGGA-CTGAAGACCTCAGGATGGAGCGAGCCCCAGGGAAGCCCTGGAGTGCCTTTGTTT-CCCCTTTTGGTAACTGAGCCGGCCCCTGCTGTCAGCATTCCTGACGGGTCAGGCCATCCCAGGGCCCTCGCGGGTCAGGTGGCCTTGCACACGCATGCTCCCGGGTGGCACCTGGGGCCAGAGATCCCCTAGTGAATTTCTTGCTGCGCACAGGCTGAGTCCAGGGACTGTACATGCTCTCCCGCATTACTGCTGGCAGCGCCATCACTGCTGGGAGCG------------------CCATGCTATATCTGCTGCGTGTCTGTGACCCCCATCTGTGACACCCTGGTTCCATACTTTACTTTTGGTCTCGACACACACGTAAT i colAng1.NW_012118821v1 I 1 C 0 s calJac3.chr14 3501244 423 - 108792865 AGGCTGCAAGGATCAGGGAAGGAGCCCTGTGCTGCAGGCCACTCAGCCACCTCCCTTCCATGTCCAGGGGGA-ATGAAGACCTCAGCAGGGTGCGGGCCCCAGGGAGGCCTTGGAGAGCCTCTGTTT-CCCCTTATGGTCACTGAGCCAACCCCTGCTGTCAGCACTGCTGACGGGTCAGGCCAACCCAGGGCCATGGCTGGCCA-GTGGCCCTGCACACACATGCTCCCGGATGGCACCCAGGGCCAGAGATCCCCTAATGAATTTCTTGCTGCACCTAGGCTGAGTCGGGGGACTGCACGTGCTCTCCTG------------------CATCTCTGCTGGGAGCT-------CCCCATGAGTCCCATGCTGTACCTACTGTGTGTCTGTGACCCGCTTCTGTGACACCCTGGTTCCAGACTTTATTTTCAGTCTCAACACAGACATAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3146772 419 - 7082604 AGACTGCAAGGTTCAGGGAAGGAGCCCTGTGCTGCAGGCCCCTCAGCCACCTCCCTTCCATCTCC-GGGGGA-CTGAAGACCT---CAAGGTGCAGGCCCCA-GGAGGCCCTGGAGAGCCTCTGTTTCCCCCTTATGGTAACTGAGCCAGCCCCTGCTGTCAGCACTGCTGACCGGTCAGGCCATCCCAGGGCCATCGCTGGCCA-GTGGCCCTGCACGTGCATGCTCCCGGGTGGCACCCAGGACCAGAGATCCCCTAATGAATTTCTTGCTGCACCTAGGCTGAGTCGGGGGACTGCACGTGCTCTCCTG------------------CGTCTCTGCTGGGAGCT-------CCCCATGAGACCCATGCTGTACCTGCTGTGTGTCTGTGACCCGCTTCTGTGACACCCTGGTTCCAGACTTTATTTTCAGTCTCAACACACACATAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 633729 422 + 5243153 AGGCTGCAAGGATCAGGGAAGGAGCCCCGTGCGGTAGGCCACTCAGCCACCTCCCTTCCATCTCC-AGGGGA-CTGAAGACCTCAGCAGGGTGTGGGCCCCAGGGAGGCCCTGGAGAGCCTCTGTTT-CCCCTTATGGTAACTGAGCCAGCCCCTGCTGTCAGCACTGCTGACGGGTCAGGCCATCCCAGGGCCATCGCTGGCCA-GTGGCCCTGCACACGCATGCTCCCAGGTGGCACCCAGGGCCAGGGATCCCCTAATGAATTTCTTGCTGCACCTAGGCTGAGTCGGGGGACTGCACGTGCTCTCCTG------------------CGTCTCTGCTGGGGGCT-------CCCCACGAGTCCCATGCTGTACCTGCTGTGTGTCTGTGACCCGCTTCTGTGACTCCCTGGTTCCAGATTTTATTTTCAGTCTCAACACACACGTAAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3375433 352 + 7587287 AGGCTGCAaggatcagggaaggagccctgtgctgcaggccactcagccacctcccttcCATCTCC-AGGGG------------------------------------------------------------------------GAGCTAGCCCCTGCTGTCAGCACTGCTGACGGGTCAGGCCATCCCAGGGCCATCACTGGCTA-GTGGTCCTGCACACGCATGCTCCCAGATGGCACCCAGGGCCAGAGATCCCCTAATGAATTTCTTGCTGCACCTAGGCTGAGTCAGGGGACTGCACGTGCTCTCCTG------------------CATCTCTGCTGGGAGCT-------CCCCACAAGTCCCATGCTGTACCTGCTGTGTGTCTGTGACCGGCTTCTGTGACACCCTGGTTCCAGACTTTATTTTCAGTCTCAACACACACATAAA i aotNan1.NW_018509326v1 C 0 I 320 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I e chlSab2.chr14 3523014 283 - 107702431 I a score=9555.000000 s hg38.chr2_KI270769v1_alt 101664 1 + 120616 a s panTro5.chr2A 3564123 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424433 1 + 114371477 a i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 302932 1 + 637652 a i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3098331 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3362446 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074588 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3465803 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3422242 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 1054249 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3416903 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3501667 1 - 108792865 A i calJac3.chr14 C 0 I 326 s saiBol1.JH378218 3147191 1 - 7082604 A i saiBol1.JH378218 C 0 I 331 s cebCap1.NW_016107454v1 634151 1 + 5243153 A i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3376105 1 + 7587287 a i aotNan1.NW_018509326v1 I 320 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I e chlSab2.chr14 3523014 283 - 107702431 I a score=146707.000000 s hg38.chr2_KI270769v1_alt 101665 18 + 120616 agagatgtgtgcaaaggg s panTro5.chr2A 3564124 18 + 111504155 AGAGATGTGTGCAAAGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424434 18 + 114371477 agagatgtgtgcaaaggg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 302933 18 + 637652 agagatgtgtgcaaaggg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3098332 18 + 81552678 AAAGATGTGTGCAAAGGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3362447 17 + 108979918 AGAGATGTGTGCAAA-GG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074589 17 - 111193037 AGAGATGTGTGCAAA-GG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3465804 17 + 3644372 AGAGATGTGTGCAAA-GG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3422243 17 - 10304083 AGAGATGTGTGCAAA-GG i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 1054250 17 + 1565135 AGAGATGTGTGCAAA-GG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3416904 17 - 13651311 AGAGATGTGTGCAAA-GG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3501994 18 - 108792865 agagaTGTGTGCAAAGGG i calJac3.chr14 I 326 C 0 s saiBol1.JH378218 3147523 18 - 7082604 AGAGATGTGTACAAAGGG i saiBol1.JH378218 I 331 C 0 s cebCap1.NW_016107454v1 634152 18 + 5243153 AGAGATGTGTGCAAAGgg i cebCap1.NW_016107454v1 C 0 I 351 s aotNan1.NW_018509326v1 3376106 18 + 7587287 agagaTGTGTGCAAAGGG i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I e chlSab2.chr14 3523014 283 - 107702431 I a score=127666.000000 s hg38.chr2_KI270769v1_alt 101683 17 + 120616 actttcaggataaactg s panTro5.chr2A 3564142 17 + 111504155 ACTTTCAGGATAAACTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424452 17 + 114371477 actttcaggataaactg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 302951 17 + 637652 actttcaggataaactg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3098350 17 + 81552678 ACTTTCAGGATAAACTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3362464 17 + 108979918 ACTTTCAGGATAAACTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074606 17 - 111193037 ACTTTCAGGATAAACTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3465821 17 + 3644372 ACTTTCAGGATAAACTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3422260 17 - 10304083 ACTTTCAGGATAAACTG i cerAty1.NW_012000820v1 C 0 I 175 s manLeu1.NW_012104432v1 1054267 17 + 1565135 ACTTTCAGGATAAACTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3416921 17 - 13651311 ACTTTCAGGATAAACTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3502012 17 - 108792865 ACTCTCCAGATGAACTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3147541 17 - 7082604 ACTCTCCGGATGAACTG i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3376124 17 + 7587287 ACTCCCCGGATGAACTG i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 634170 351 + 5243153 I e chlSab2.chr14 3523014 283 - 107702431 I a score=105510.000000 s hg38.chr2_KI270769v1_alt 101700 17 + 120616 gctccaccaccctatcc s panTro5.chr2A 3564159 17 + 111504155 GCTCCACCACCCTATCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424469 17 + 114371477 gctccaccgccctatcc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 302968 17 + 637652 gctccaccgccctatcc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3098367 17 + 81552678 GCTCCACCGCCCTATCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3362481 17 + 108979918 GCTCCGCCGCCCTGTCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074623 17 - 111193037 GCTCCGCCGCCCTGTCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3465838 17 + 3644372 GCTCCGCCGCCCTGTCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3422452 17 - 10304083 GCTCCGCCGCCCTGTCC i cerAty1.NW_012000820v1 I 175 C 0 s manLeu1.NW_012104432v1 1054284 17 + 1565135 GCTCCGCCTCCCTGTCC i manLeu1.NW_012104432v1 C 0 I 105 s colAng1.NW_012118821v1 3416938 17 - 13651311 GCTCTGCCACCCTGTCC i colAng1.NW_012118821v1 C 0 I 126 s calJac3.chr14 3502029 17 - 108792865 GCTACATGGCCCCATTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3147558 17 - 7082604 GCTGCACAGCCCCATTC i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3376141 17 + 7587287 GCTGCACGGCCCCATTC i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 634170 351 + 5243153 I e chlSab2.chr14 3523014 283 - 107702431 I a score=-12049.000000 s hg38.chr2_KI270769v1_alt 101717 2 + 120616 --ct s panTro5.chr2A 3564176 2 + 111504155 --CT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424486 2 + 114371477 --ct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 302985 2 + 637652 --ct i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3098384 2 + 81552678 --CT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3362498 2 + 108979918 --AT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074640 2 - 111193037 --GT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3465855 2 + 3644372 --GT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3422469 2 - 10304083 --GT i cerAty1.NW_012000820v1 C 0 C 0 s calJac3.chr14 3502046 1 - 108792865 A--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3147575 1 - 7082604 A--- i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3376158 2 + 7587287 AT-- i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 634170 351 + 5243153 I e colAng1.NW_012118821v1 3416955 126 - 13651311 I e manLeu1.NW_012104432v1 1054301 105 + 1565135 I e chlSab2.chr14 3523014 283 - 107702431 I a score=13209.000000 s hg38.chr2_KI270769v1_alt 101719 3 + 120616 tcg s panTro5.chr2A 3564178 3 + 111504155 TCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424488 3 + 114371477 tcg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 302987 3 + 637652 tcg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3098386 3 + 81552678 TCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3362500 3 + 108979918 CCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074642 3 - 111193037 CCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3465857 3 + 3644372 CCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3422471 3 - 10304083 TCA i cerAty1.NW_012000820v1 C 0 C 0 s calJac3.chr14 3502047 3 - 108792865 TCG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3147576 3 - 7082604 TCG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 634521 3 + 5243153 TCG i cebCap1.NW_016107454v1 I 351 C 0 s aotNan1.NW_018509326v1 3376160 2 + 7587287 -CG i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I e colAng1.NW_012118821v1 3416955 126 - 13651311 I e manLeu1.NW_012104432v1 1054301 105 + 1565135 I e chlSab2.chr14 3523014 283 - 107702431 I a score=1348573.000000 s hg38.chr2_KI270769v1_alt 101722 151 + 120616 ccagcgcctggcccagtgtccagcacacaggaggcAAGCATTTCTCAGATGTGGGATGCATGGCGCATCCCAGCGTCTTCTTTGTCAGAGAATGAGGGAGAAAAGAAACCACC--AGAGTCTCCTGAAGGTGTTGCTGGAAAGAGCCCAGCTC s panTro5.chr2A 3564181 150 + 111504155 CCAGTGCCTGGCCCAGTGTCCAGCACACAGGAGGCAAGCATTTCTCAGATGTGGGATGCATGGCGCATCCCAGCGTCTTCTTTGTCAGAGAATGA-GGAAAAAACAAACCACC--AGAGTCTCCTGAAGGTGTTGCTGGAAAGAGCCCAGCTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424491 150 + 114371477 ccagtgcctggcccagtgtccagcacacaggaggcAAGCATTTCTCAGATGTGGGATGCATGGCGCATCCCAGCGTCTTCTTTGTCAGAGAATGA-GGAAAAAACAAACCACC--AGAGTCTCCTGAAGGTGTTGCTGGAAAGAGCCCAGCTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 302990 151 + 637652 ccagcgcctggcccagtgtccagcacacaggaggcAAGCATTTCTCAGATGTGGGATGCATGGCGCATCCCAGCGTCTTCTTGGTCAGAGAATGAGGGAGAAAAGAAACCACC--AGAGTCTCCTGAAGGTGTTGCTGGAAAGAGCCCAGCTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3098389 151 + 81552678 CCAGTGCATGGCCCAGCGTCCAGCACACAGGAGGCAAGCATTTCTCAGATGTGGGATGCATGGCACATCCCAGCATCTTCTTGATCAGAGAATGAGGGAGAAAAGAAACCACC--AGAGTCTCCTGAAGGCGTTGCTGTAAAGAGCCCAGCTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3362503 153 + 108979918 CCAGCACATGGCCCAGTGTCCGGCACACAGGAGGCGAGCATTTCTCAGATATGGGATGCATGGCACATCCCCGCGTCATCTTTATCAGAACATGAGGGAGAAAAGAAACCACCAAAGAGTCTCCTGAAGGTGTTGCTGGAAAGAGTCCTGCTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074645 153 - 111193037 CCAGCACATGGCCCAGTGTCCGGCACACAGGAGGCGAGCATTTCTCAGATATGGGATGCATGGCACATCCCCGCGTCATCTTTATCAGAACATGAGGGAGAAAAGAAACCACCAAAGAGTCTCCTGAAGGTGTTGCTGGAAAGAGTCCCGCTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3465860 153 + 3644372 CCAGCACATGGCCCAGCGTCCGGCACACAGGAGGCGAGCATTTCTCAGATATGGGATGCATGGCACATCCCCGCGTCATCTTTATCAGAACATGAGGGAGAAAAGAAACCACCAAAGAGTCTCCTGAAGGTGTTGCTGGAAAGAGTCCCGCTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3422474 153 - 10304083 CCAGCACATGGCCCAGTGTCCGGCACACAGGAGGCAAGCATTTCTCAGATATGGGATGCATGGCACATCCCCGCGTCATCTTTATCAGAGAATGAGGGAGAAAAGAAACCACCAAAGAGTCTCCTGAAGGTGTTGCTGGAAAGAGTCCCGCTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3523297 153 - 107702431 CCAGCACATGGCCCAGTGTCCAGCACACAGGAGGCAAGCATTTCTCAGATATGGGATGCATGGCACATCCCCACGTCATCTTTATCAGAGAATGAGGGAGAAAAGAAACCACCAAAGAGTCTCCTGAAGGTGTTGCTGGAAAGAGTCCCGCTC i chlSab2.chr14 I 283 C 0 s manLeu1.NW_012104432v1 1054406 153 + 1565135 CCAGCACATGGCCCAGTGTCCGGCACACAGGAGGCAAGCATTTCTCAGATATGGGATGCATGGCACATCCCCGCGTCATCTTTATCAGAACATGAGGGAGAAAAGAAACCACCAAAGAGTCTCCTGAAGGTGTTGCTGGAAAGAGTCCCGCTC i manLeu1.NW_012104432v1 I 105 C 0 s colAng1.NW_012118821v1 3417081 153 - 13651311 CCAGCACATGGCCCAGTGTCCAGCACACAGGAGGCAAGCGTTTCTCAGACATGGGATGCGTGGCGCATCCTCGCATCATCTTTATCAGAGAATGAGGGAGAAAAGAAACCATCAAAGAGTCTCCTGAAGGTGTTGCTGGAAAGAGTCCAGCTC i colAng1.NW_012118821v1 I 126 C 0 s calJac3.chr14 3502050 149 - 108792865 CCAGCGC-TGGCCCCGCGTCCGGCACACAGGAGACAAGCCCTCCTCAGACATCAGATGCACAGCACG-CCCAGCGTCCTCTTCATCAGAGAATGAGGGAGAAAAGAAACCACC--AGAGTCTCCTGAGAGTGTTGCTGGAAAGAGCCCAGCTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3147579 148 - 7082604 CCAGCGC-TGGCCCCGCGTCCGGCACACGGGAGGCAAGCCCTTCTCAGATATCAGACGCACAGCGCG-CCCAGCA---TCTTCATCAGAGAATGAGGGAGAAAAGAAACCCCCAAAGAGTCTCCTGAGAGCGTTGCTGGAAAGAGCCCAGCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 634524 148 + 5243153 CCAGCGC-TGGCCCCGCGTCCGGCACACAGGAGGCAAGCCCTCCTCAGATGTCAGATGCACAGGACG-CCCAGCG---TCTTCATCAGAGAATGAAGGAGAAAAGAAACCACCAAAGAGTCTCCTGAGAGCGTTGCTGGAAAGAGCCCAGCTC i cebCap1.NW_016107454v1 C 0 I 43 s aotNan1.NW_018509326v1 3376162 147 + 7587287 CCAGCGC-TGGCCCCGCGTCCGGCACACAGGAGGCAAGCCCTCCTCAGATGTCAGATGCACAGCACG-CCCAGCGTCCTCTTCATCAGAAAAT----GAGAAAAGAAACCAGCAAAGAGTCTCCTGAGAGCATTGCTGGAAAGAGCCCAGCTC i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=347.000000 s hg38.chr2_KI270769v1_alt 101873 1 + 120616 A s panTro5.chr2A 3564331 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424641 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 303141 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3098540 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3362656 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074798 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466013 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3422627 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3523450 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1054559 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3417234 1 - 13651311 C i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3502199 1 - 108792865 G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3147727 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3376309 1 + 7587287 G i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 634672 43 + 5243153 I a score=184225.000000 s hg38.chr2_KI270769v1_alt 101874 21 + 120616 CTGGCCGTGCACCTGCAGGCC s panTro5.chr2A 3564332 21 + 111504155 CTGGCCGTGCACCTGCAGGCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424642 21 + 114371477 CTGGCCGTGCACCTGCAGGCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 303142 21 + 637652 CTGGCCATGCACCTGCAGGCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3098541 20 + 81552678 CTGGCCGTGCA-CTGGAGGCC i nomLeu3.chr19 C 0 I 118 s rheMac8.chr13 3362657 21 + 108979918 CTGGCCGTGCACCCGCAGGCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074799 21 - 111193037 CTGGCCGTGCACCCGCAGGCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466014 21 + 3644372 CTGGCCGTGCACCCGCAGGCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3422628 21 - 10304083 CTGGCCGTGCACCCGCAGGCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3523451 21 - 107702431 CTGGCCGTGCACCTGCAGGCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1054560 21 + 1565135 CTGGCCGTGCACCCGCAGGCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3417235 21 - 13651311 CTGGCCGCGCACCTGCAGGCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3502200 20 - 108792865 CTGGCCGTGCACCTGCAGCC- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3147728 20 - 7082604 CTGGCCGTGCACCTGCAGCT- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 634715 20 + 5243153 CTGGCCGTGCACCTGCAGCC- i cebCap1.NW_016107454v1 I 43 C 0 s aotNan1.NW_018509326v1 3376310 20 + 7587287 CCGGCCGTGCACCTGCAGCC- i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=1351856.000000 s hg38.chr2_KI270769v1_alt 101895 149 + 120616 GCTGGCCTCAGCACAGCCCCATCCCTAGAGTTCTCCCACGCCGCTGACAACAGGCGCTCCATCCA-TGGCCCGTGAAGTGCCCACGGGCTGCAGGTCTTCCCTTGAGATTCAGAAAGTACCTGCCGCTCAGCCCCTGTACACACCTGTCA s panTro5.chr2A 3564353 149 + 111504155 ACTGGCCTCAGCACAGCCCCATCCCTAGAGTTCTCCCACGCCGCTGACAACAGGCGCTCCATCCA-TGGCCCGTGAAGTGCCCACGGGCTGCAGGTCTTCCCTTGAGATTCAGAAAGTACCTGCCGCTCAGCCCCTGTACATACCTGTCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424663 149 + 114371477 ACTGGCCTCAGCACAGCCCCATCCCTAGAGTTCTCCCACGCCGCTGACAACAGGCGCTCCATCCA-TGGCCCGTGAAGTGCCCACGGGCTGCAGGTCTTCCCTTGAGATTCAGAAAGTACCTGCCGCTCAGCCCCTGTACATACCTGTCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 303163 149 + 637652 GCTGGCCTCAGCACAGCCCCATCCCTAGAGTTCTCCCACGCCGCTGACAACAGGCGCTCCATCCA-TGGCCCGTGAAGTGCCCACGGGCTGCAGGTCTTCCCTTGAGATTCAGAAAGTACCTGCCGCTCAGCCCCTGTACACACCTGTCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3098679 149 + 81552678 GCTGGCCTCAGCACAGCCGCATCCCTAGAGTTCTCCCACGCGGCTGACAACAGGCGCTCCATCCA-TGGCCCGTGAAGTGCCCACAGGCTACAGGTCTTCCCTTGAGATTCAGAGAGTACCAGCCGCTCAGCCCCTGTACACACCTGTCA i nomLeu3.chr19 I 118 C 0 s rheMac8.chr13 3362678 149 + 108979918 GCTGGCCTCAGCACAGCCACATCCCTAGACTTCTCCCATGCGGATGACAACAGGCGCTCCGTCTG-TGGCCCATGAAGTGCTCACAGGCTGCAGGTCTTCCCTTGAGATTCAGAAAGTACCTGCTGCTCAGCCCCTGTACACACCTGTCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074820 149 - 111193037 GCTGGCCTCAGCACAGCCACATCCCTAGACTTCTCCCATGCGGATGACAACAGGCGCTCCGTCTG-TGGCCCGTGAAGTGCTCACAGGCTGCAGGTCTTCCCTTGAGATTCAGAAAGTACCTGCTGCTCAGCCCCTGTACACACCTGTCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466035 149 + 3644372 GCTGGCCTAAGCACAGCCACATCCCTAGACTTCTCCCATGCGGATGACAACAGGCGCTCCGTCTG-TGGCCCATGAAGTGCTCACAGGCTGCAGGTCTGCCCTTGAGATTCAGAAAGTACCTGCTGCTCAGCCCCTGTACACACCTGTCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3422649 149 - 10304083 GCTGGCCTCAGCACAGCCACATCCCTAGACTTCTCCCATGCGGATGACAACAGGCGCTCCGTCCG-TGGCCCATGAAGTGCTCGCAGGCTGCAGGTCTTCCCTTGAGATTCAGAAAGTACCTGCTGCTCAGCCCCCGTACACACCTGTCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3523472 148 - 107702431 GCTGGCCTCAGCACAGCCACATTCCTAGACTTCTCCCATGCGGATGACAACAGGTGCTCCGTCCG-TGGCCCATGAAGTGCTCGCAGGCTGCAGATCTTCCCTTGAGATTCAGAAAGTACCTGCTGCTCAGGCCCTGTA-ACACCTGTCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1054581 149 + 1565135 GCTAGCCTCAGCACAGCCACATCCCTAGACTTCTCCCATGCGGATGACAACAGGCGCTCCGTCCG-TGGCCCATGAAGTGCTCGCAGGCTGCAGGTCTTCCCTTGAGATTCCGAAAGTACCTGCTGCTCAGCCCCTGTACACACCTGTCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3417256 147 - 13651311 GCTGGCCTCAGCACAGCCACATCCCTAGACTTCTCCCGTGCGGATGACAACAGGCACT--GTCCG-TGGCCCATGAAGTGCTCGCAGGCTGCAGGCCTTCCCTTGAGATTCAGAAAGGACCTGCTGCTCAGCCCCTGTGCGCACCTGTCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3502220 147 - 108792865 ACTGGCCTTGGCCCAGCCGCATCCCTTGAGTTCTCCCACATGGCTG---ACAGGTGCTCCCTCCACTGGCCCTCGAGGTGCTCGAGGGCTGCAGGTCTTCTTTTGAGATTCAGAAAGTGCCTGCTGCTCAGCACCGGTACACGCCTGTCA i calJac3.chr14 C 0 I 488 s saiBol1.JH378218 3147748 146 - 7082604 ACTGGCCTCGGCCCAGCCGCATCCC-TGAGTCCTCCCACACGGCTG---GCAGGCGCTCCCTCCACTGGCCCTCGAAGTGCTCACGGGCTGCAGGTCCTCCCTTGAGATTCAGAAAGTACCTGCTGCTCAGCCCCTGTACACACCTGTCA i saiBol1.JH378218 C 0 I 465 s cebCap1.NW_016107454v1 634735 147 + 5243153 ACTGGCCTCGGCCCAGCCGCTCCCCTTGAGTCCTCCCACACGGCTG---ACAGGTGCTCCCTCCACTGGCCCTCGAAGTGCTCGCGGGCTCCAGGCCCTCCCTTGAGATTCAGAAAGTACCTGCTGCTCAGCCCCTGTACACGCCTGTCA i cebCap1.NW_016107454v1 C 0 I 466 s aotNan1.NW_018509326v1 3376330 146 + 7587287 ACCGGCCTCGGCCCAGCCGCCTCGCTAGAGT-CTCCCACACGGCTG---ACAGGTGCTCCCTCCACTGGCCCTCGAAGTGCTCGCGGGCTGCAGGTCTTCCCTTGAGATTCAGAAAGTACCTGCCGCTCAGCCCCTGTACACGCCTGTCA i aotNan1.NW_018509326v1 C 0 I 484 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=6006.000000 s hg38.chr2_KI270769v1_alt 102044 1 + 120616 T s panTro5.chr2A 3564502 1 + 111504155 T i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424812 1 + 114371477 T i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 303312 1 + 637652 T i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3098828 1 + 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3362827 1 + 108979918 T i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074969 1 - 111193037 T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466184 1 + 3644372 T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3422798 1 - 10304083 T i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3523620 1 - 107702431 T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1054730 1 + 1565135 T i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3417403 1 - 13651311 T i colAng1.NW_012118821v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e saiBol1.JH378218 3147894 465 - 7082604 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 634882 466 + 5243153 I e aotNan1.NW_018509326v1 3376476 484 + 7587287 I e calJac3.chr14 3502367 488 - 108792865 I a score=10500.000000 s hg38.chr2_KI270769v1_alt 102045 1 + 120616 G s panTro5.chr2A 3564503 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424813 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 303313 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3098829 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3362828 1 + 108979918 g i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074970 1 - 111193037 g i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466185 1 + 3644372 g i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3422799 1 - 10304083 g i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3523621 1 - 107702431 g i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1054731 1 + 1565135 g i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3417404 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3502855 1 - 108792865 g i calJac3.chr14 I 488 C 0 s saiBol1.JH378218 3148359 1 - 7082604 g i saiBol1.JH378218 I 465 C 0 s aotNan1.NW_018509326v1 3376960 1 + 7587287 g i aotNan1.NW_018509326v1 I 484 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 634882 466 + 5243153 I a score=2006201.000000 s hg38.chr2_KI270769v1_alt 102046 212 + 120616 cctctcgggctcaagtga---tcctcccacctcagcacctc-agtatctgggaccacaggtgcctaccaccctgctcggctaatttttgtatttttagtagagatggcgtttcaccatgttagccaggctggtctcaaactc-----ctcaagtgatcctcctgcctcggcctcctgaagtgctgggattacaggcgtaagccaccgcgcccgtccTTTTT s panTro5.chr2A 3564504 212 + 111504155 cctctcgggctcaagtga---tcctcccacctcagcacctc-agtatctgggaccacaggtgcctaccaccatgctcggctaatttttgtatttttagtagagatgggttttcaccatgttagccaggctggtctcaaactc-----ctcaagtgatcctcctgcctcggcctcctgaagtgctgggattacaggcatgagccaccacgcccATCCTTTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3424814 212 + 114371477 cctctcaggctcaagtga---tcctcccacctcagcacctc-agtatctgggaccacaggtgcctaccaccatgctcggctaatttttgtatttttagtagagatgggttttcaccatgttagccaggctggtctcaaactc-----ctcaagtgatcctcctgcctcggcctcctgaagtgctgggattacaggcatgagccaccacgcccgtccTTTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 303314 212 + 637652 cctcttgggctcaagtga---tcctcccacctcagcacctc-agtatctgggaccacaggtgcctaccaccgtgctcggctaatttttgtatttttagtagagatggcgtttcaccatgttagccaggctggtctcaaactc-----ctcaagtgatcctcctgcctcggcctcctgaagtgctgggattacaggcatgagccaccgcgcccATCCTTTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3098830 213 + 81552678 cctctcgggctccagtgatcctcctcccacctcagcacctc-agtatctgggaccacaggtgcctaccaccatgctcggctaatttttgtatttttagtagagatggagtttcaccatgttaggtgaa--agtctcaaactc-----ctcaagtgatcttcctgccttggcctcctgaagtgctgggattataggcatgagccaccgtgcccgtccTTTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3362829 217 + 108979918 cctcttgggctcaagtta---tcctcccacctcagcaccac-agtagctgggaccacaggtgcctaccacaacgctcagctgatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcgtgacctcaagtgatcctcccgcctcggcctcctgaagtgctgggattacaggcgtgagccgccgcgcccATCCTTTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5074971 217 - 111193037 cctctcgggctcaagtta---tcctcccacctcagcaccac-agtagctgggaccacaggtgcctaccacaacgctcagctgatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcgtgacctcaagtgatcctcccgcctctgcctcctgaagtgctgggattacaggcgtgagccaccgcgcccgtccTTTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466186 217 + 3644372 cctctcgggctcaagtta---tcctcccacctcagcaccac-agtagctgggaccacaggtgcctaccacaacgctcagctgatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcgtgacctcaagtgatcctcccgcctctgcctcctgaagtgctgggattacaggcgtgagccaccgcgcccATCCTTTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3422800 217 - 10304083 cctctcgggctcaagtta---tcctcccacctcagtaccgc-agtacctgggaccacgggtgcctaccacgacgctcagctgatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcgtgacctcaagtgatcctcccgcctcggcctcctgaagtgctgggattacaggcgtgagccaccgcgcccATCCTTTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3523622 217 - 107702431 cctctcgggctcaagtta---tcctcccacctcagcaccac-agtagctgggaccacaggtgcctaccatgacgctcagctgatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcgtgacctcaagtgatcctcccacctctgcctcctgaaatgctgggattacaggcgtgagccaccacgcccATCCTTTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1054732 217 + 1565135 cctctcgggctcaagtta---tcctcccacctcagcaccac-agtagctgggaccacaggtgcctaccacaacgctcagctgatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcgtgacctcaagtgatcctcccgcctctgcctcctgaagtgctgggattacaggcgtgagccaccacgcccATCCTTTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3417405 217 - 13651311 cctctcgggctcaagtga---tcctcccacctcagcaccgc-agtagctgggaccacaggtgcctaccacgacgctcagctgatttttgtatttttagtagagatgaggtttcaccatgttggccaggctggtctcaaactcctgatctcaagtgatcctcccgcctctgcctcctgaagtgctgggattacaggcgtgagccaccacgcccATCCTTTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3502856 217 - 108792865 cctcccaggctcaagtga---tcctcccacctcagcctcccgagtatctgggaccacaggcgcccaccaccaggcttggctaa-ttttgtatttttagtggagacggggtttcaccatgttggcaaggctggtctcaaactcctgaccacaagtgacctgcccgccttggcctcccaaagtgctgggattacaggtgtgagccaccgtgcccATCCTTTTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3148360 217 - 7082604 cctcctgggctcaagtga---tcctcccacctcagcctcccgagtatctgggaccacaggcgcccaccaccacgcttggctaa-ttctgcatttttagtagagacgcggtttcaccctgttggccaggctggtctcgaactccggacctcaggtgacctgcccgccttggcctcccaaagcgccgggattacaggcgggagccaccgtgcccATCGTTTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 635348 217 + 5243153 cctcccgggctcaagtga---tcttcccacctcagccttccgagtatctgggaccacgggcactcaccaccacgcttggctaa-ttttgtatttttagtagagacgggatttcaccatgttggcaagcctggtctcaaactcctgaccacaagtgacctgcccgccttggcctcccaaagtgctgggattacaggtgggagccaccgtgcccATCCTTTTC i cebCap1.NW_016107454v1 I 466 C 0 s aotNan1.NW_018509326v1 3376961 217 + 7587287 cctcccaggctcaagtga---tcctcccacctcagcctcccgagtatctgggaccacaggtgcccaccaccacgcttggctaa-ttttgtatttttagtagagacggggtttcaccatgttggcaaggctggtctcaaacttctgaccacaagtgacctgcctgccttggcctcccaaagtgctgggattacaggtgtgagccaccgtgcccATCCTTTTC i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91442604 836 - 120129022 I e dasNov3.JH580157 673653 499 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=101825.000000 s hg38.chr2_KI270769v1_alt 102258 14 + 120616 GTAATTAGGTTTTC s panTro5.chr2A 3564716 14 + 111504155 ATAATTAGGTTTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425026 14 + 114371477 ATAATTAGGTTTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 303526 14 + 637652 GTAATTAGGTTTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099043 14 + 81552678 GTAATTAGGTTTTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3363046 14 + 108979918 GTAATAAACTTTTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5075188 14 - 111193037 GTAATAAACTTTTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466403 14 + 3644372 GTAATAAACTTTTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3423017 14 - 10304083 GTAATAAACTTTTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3523839 14 - 107702431 GTAATAAACTTTTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1054949 14 + 1565135 GTAATAAACTTTTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3417622 14 - 13651311 GTAATAAACTTTTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3503073 14 - 108792865 ATAATCAAGTTTTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3148577 10 - 7082604 A----CAAGTTCTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 635565 14 + 5243153 ATCATTAAGTTTTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3377178 14 + 7587287 ATAATTAATTTTTC i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 674152 14 + 2232271 GTAATTAATTTGTT i dasNov3.JH580157 I 499 C 0 e mm10.chr12 91442604 836 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=1627932.000000 s hg38.chr2_KI270769v1_alt 102272 163 + 120616 ACTGCATAAATCATAAAACGATTACA-GGTCTCCAGAAACTGCTGCCTGAT-ACACTTTCCAA-AGTAAACAGCTTTTGGAAAAATGGCTGTTTTTAGATCACATCTAAATGTCGCATTCTTGGTCTGTGTGACTAGAACCAGACTC--CAGCCATCCACCCGCCCAC s panTro5.chr2A 3564730 163 + 111504155 ACTGCATAAATCATAAAACGATTACA-GGTCTCCAGAAACTGCTGCCTGAT-ACACTTTCCAA-AGTAAACAGCTTTTGGAAAAATGGCTGTTTTTAGATCACATCTAAATGTCGCATTCTTGGTCTGTGTGACTAGAACCAGACTC--CAGCCATCCACCCGCCCAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425040 163 + 114371477 ACTGCATAAATCATAAAACGATTACA-GGTCTCCAGAAACTGCTGCCTGAT-ACACTTTCCAA-AGTAAACAGCTTTTGGAAAAATGGCTGTTTTTAGATCACATCTAAATGTCGCATTCTTGGTCTGTGTGACTAGAACCAGACTC--CAGCCATCCACCCGCCCAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 303540 162 + 637652 ACTGCATAAATCATAAAACGATCACA-GGTCTCCAGAAACTGCTGCCTGAT-ACACTTTCCAA-AGTAAACAGCTTTTGG-AAAATGGCTGTTTTTAGATCACATCTAAATGTCGCATTCTTGGTCTGTGTGACCAGAACCAGACTC--CAGCCATCCACCCGCCCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099057 164 + 81552678 ACTGCATAAGTCATAAAACAATTACAGGGTCTCCAGAAACTGCTGCCTGAT-ACACTTTCCAA-AGTAAACAGCTTTCGGAAAAATGGCTGTTTTTAGATCGCATCTAAATGTCGCATTCTTGGTCTGTGTGACGAGAACCAGACTC--CAGCCATCCACCTGCCCAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3363060 165 + 108979918 ACTGCATAAATCATAAAACAATTACA-GGTCTCCAGAAACTGCTGCTTGATAACACTTTCCAACAGTAAACAGCTTTCGGAAAAATGGCTGTTTTCAGATCACATCTAAATGTCGCATTCTGGGTCTGTGTGACTAGAACCAGATTC--CAGTCATCCACCCGCCCAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5075202 164 - 111193037 ACTGCATAAATCATAAAACAATTACA-GGTCTCCAGAAACTGCTGCTTGAT-ACACTTTCCAACAGTAAACAGCTTTCGGAAAAATGGCTGTTTTCAGATCACATCTAAATGTCGCATTCTGGGTCTGTGTGACTAGAACCAGATTC--CAGTCATCCACCCGCCCAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466417 164 + 3644372 ACTGCATAAATCATAAAACAATTACA-GGTCTCCAGAAACTGCTGCTTGAT-ACACTTTCCAACAGTAAACAGCTTTCGGAAAAATGGCTGTTTTCAGATCACATCTAAATGTCGCATTCTGGGTCTGTGTGACTAGAACCAGATTC--CAGTCATCCACCCGCCCAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3423031 164 - 10304083 ACTGCATAAATCATACAACAATTACA-GGTCTCCAGAAACTGCTGCTTAAT-ACACTTTCCAACAGTAAACAGCTTTCGGAAAAATGGCTGTTTTCAGATCACATCTAAATGTCGCATTCTGGGTCTGTGTGACTAGAACCAGATTC--CAGTCATCCGCCCGCCCAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3523853 164 - 107702431 ACTGCATAAATCATAAAACAATTACA-GGTCTCCAGAAACTGCTGCTTGAT-ACACTTTCCAACAGTAAACAGCTTTCGGAAAAATGGCTGTTTTCAGATCACATCTAAATGTCGCATTCTCAGTCTGTGTGACTAGAACCAGATTC--CAGTCATCCACCCGCCCAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1054963 164 + 1565135 ACTGCATAAATCATAAAACAATTACA-GATCTCCAGAAACTGCTGCTTGAT-ACACTTTCCAACAGTAAACAGCTTTCGGAAAAATGGCTGTTTTCAGATCACATCTAAATGTCGCATTCTGGGTCTGTGTGACTAGAACCAGATTC--CAGTCATCCACCCGCCCAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3417636 164 - 13651311 ACTGCATAAATCATAAAACGATTACA-GGTCTCTAGAAACTGCTGCTTGAT-ACACTTTCCAACAGTAAACAGCTTTCGGAAAAATGGCTGTTTTCAGATCACATCTAAATGTCGCATTCTCCATCTGTGTGACTAGAACCAGACTC--CAGTCATCCACCCGCCCAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3503087 146 - 108792865 ACTACATAACTCATAAAACGATTAGA-GGCCTCCAGAAACTGCGGCGTCAT-ATCCTTTCCAACAGGAAACAGC------------------TTTCAGATCACACTGAAATGTCACATTCTTGGTCTATGTGACTAAAACCAGACTC--CAGCCATCCACCCTCCCAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3148587 161 - 7082604 ACTGCGTAACTCACCACACGGTCAGA-GGCCTCCCGAAGCCGCCGCGTCAG----CCTTTCTACAGGAAACGGCTTTCCGTCAAACGGCTGTTTTCAGATCGCACGGAAATGCCGCATTCCTGGTCCGTGTGACGGGAACCAGGCTC--CAGCCATCCAGCCACCCAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 635579 164 + 5243153 ACTGCATAACTCATAAAACGATGAGA-GTCCTCTAGAAACTGCTGCATCAT-GTCCTTTCTAGTGGGAAACAGCTTTCCGTAAAATGGCGGTTTTCCGATCACACTGAAATGTCACATTCTTGGTCTGTGTGACTAGAACCAGACTT--CAGCCATCCACCCACCCAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3377192 162 + 7587287 ACTGCGTAACTCATAAAATGATTAGA-GGCCTCCAGAAACTGCTGCATCAT-ATCCTTTCTAACAGGAAACAGCTTTCAGAAAAATGGCTGTTTTCAGATCACACTGAAATGTCACATTCTTGGTCTGTGTGAC--AAACCAGACTC--CAGCCATCCACCCACCCAC i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91443440 143 - 120129022 ATTGTATAAGCCATAAAATTATTTGA-GGTTTTTGAAAACTTTTACATAGT-GTACTTTCCAAAGGAAAACAGTTTTCAGAAAAATGATTG-TTCCAGCTCACAC------------------ATCTG---AACAGGAATCAAATTCA-TCACCCTccacccgcccac i mm10.chr12 I 836 I 504 s dasNov3.JH580157 674166 161 + 2232271 ATTGTATAACT--TAAAAC-ATTTGA-GGTTTCTAAAAACCTTTGCACAAT-ATACTTTCCAATGAAAAACAGCTTTT--AAAAATGACTATTTTTAGATCTCATTGGTATTTAACATTTTTTATCTGTATGACTAGAATCAGATTCATCAGTTATCCATCCTCCAAC i dasNov3.JH580157 C 0 C 0 e otoGar3.GL873658 2583869 1291 + 5252280 I a score=1643563.000000 s hg38.chr2_KI270769v1_alt 102435 187 + 120616 ---------CTGG----GGTATCACACACCAGGCTCTGGGAACGCGCAAGAAGCCGGCATGCTGGGAAGTTACTCATAGCTCCTGGGGTCA---CCCTCCCG---CCCCATGCCCATC-CGGATGAGATGTTTT-----CGT-GAGTTGCGTAACTCACAGCCACCCGGTAACA-------------------------------------------CGATCGACCAACAGAGGCCTCACTCTCGGGAAACCGAGG- s panTro5.chr2A 3564893 187 + 111504155 ---------CTGA----GGTATCACACACCAGGCTCTGGGAACATGCAAGAAGCCGGCACGCTGGGAAGTTACTCACAGCTCCTGGGGTCA---CCCTCCCG---CCCCATGCCCATC-CGGATGAGATGTTTT-----CGT-GAGTTGCGTAACTCACAGCCACCCGGTAACA-------------------------------------------CGATCGACCAACAGAGAACTCACTCTCGGGAAACCGGGG- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425203 187 + 114371477 ---------CTGA----GGTATCACACACCAGGCTCTGGGAACGCGCAAGAAGCCGGCATGCTGGGAAGTTACTCACAGCTCCTGGGGTCA---CCCTCCCG---CCCCATGCCCATC-CGGATGAGATGTTTT-----CAT-GAGTTGCGTAACTCACAGCCACCCGGTAACA-------------------------------------------CGATCGACCAACAGAGAACTCACTCTCGGGAAACCGGGG- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 303702 187 + 637652 ---------CTGG----GGTATCACACACCAGGCTCTGGGAACACGCAAGAAGCCGGCACGCTGGGAAGTTCCTCACAGCTCCTGGGGTCA---CCCTCCCG---CCCCATGCCCATC-CGGATGAGATGTTTT-----CAT-GAGTTGCGTAACTCACAGCCACCCGGTAACA-------------------------------------------CGATCGACCAACAGAGGCCTCCCTCTCGGGAAACCGAGG- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099221 187 + 81552678 ---------CTGG----GGTACCGCACACCAGGCTCTGGGAACGCGCAAGAAGCCGGCACGCTGGGAAGTTACTCACAGCGCCTGGGGTCG---CCCTCTCG---CCCCACGCCCATC-CGGATGAGATGTTTT-----CGT-GAGTTGCGTAACTCACAGCCACCCAGTAACA-------------------------------------------CGATCGACCAACAGAGGCCTCACTCTCGGGAAACCGAGG- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3363225 187 + 108979918 ---------CTGG----GGTACCGCACACCAGGCTCTGGGAAGGCGCAAGAAGCCGGCATGCTGGGAAGTTACTCACAGCTCCTGGGGTGG---CCCTCCCA---CCCCACGCCCATC-CGGATGAGATGTTTT-----CGT-GAGTTGCGTAACTCACAGCCACCCAGTAACA-------------------------------------------CGATCGACCAACAGAGGCCTCACTCTGGGGAAACTGAGG- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5075366 187 - 111193037 ---------CTGG----GGTACCGCACACCAGGCTCTGGGAAGGCGCAAGAAGCCGGCACGCTGGGAAGTTACTCACAGCTCCTGGGGTGG---CCCTCCCA---CCCCACGCCCATC-CGGATGAGATGTTTT-----CGT-GAGTTGCGTAACTCACAGCCACCCAGTAACA-------------------------------------------CGATCGACCAACAGAGGCCTCACTCTGGGGAAACTGAGG- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466581 187 + 3644372 ---------CTGG----GGTACCGCACACCAGGCTCTGGGAAGGCGCAAGAAGCCGGCACGCTGGGAAGTTACTCACAGCTCCTGGGGTGG---CCCTCCCA---CCCCATGCCCATC-CGGATGAGATGTTTT-----CGT-GAGTTGCATAACTCACAGCCACCCAGTAATA-------------------------------------------CGATCGACCAACAGAGGCCTCACTCTGGGGAAACTGAGG- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3423195 187 - 10304083 ---------CTGG----GGTACCGCACACCAGGCTCTGGGAAGGCGCAAGAAGCCGGCACGCTGGGAAGTTACTCACAGCTCCTGGGGTGG---CCCTCCCA---CCCCATGCCCATC-CAGATGAGATGTTTT-----CAT-GAGTTGCATAACTCACAGCCACCCAGTAACA-------------------------------------------CGATCGACCAACAGAGGCCTCACTCTGGGGAAACTGAGG- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3524017 187 - 107702431 ---------CTGG----GGTACCGCACACCAGGCTCTGGAAAGGCGCAAGAAGCCGGCACGCTGCGAAGTTACTCACAGCTCCTGGGGTCG---CCCTCCCA---CCCCATGCCCATC-CGGATGAGATGTTTT-----CAT-GCGTTGCATAACTCACAGCCACCCAGTAACA-------------------------------------------CGATCGACCAACAGAGACCTCACTCTCGGGAAACTGAGG- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1055127 187 + 1565135 ---------CTGG----GGTACCGCACACCAGGCTCTGGGAAGGCGCAAGAAGCCGGCATGCTGGGAAGTTACTCACAGCTCCTGGGGTGG---CCCTCCCA---CCCCAAGCCCATC-CGGATGAGATGTTTT-----CGT-GAGTTGCATAACTCACAGCCACCCAGTAACA-------------------------------------------CGATCGACCAACAGAGGCCTCACTCTGGGGAAACTGAGG- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3417800 185 - 13651311 ---------CTGG----GGTACCGCACACCAGGCTCTGGGAAGGCGCAAGAAGCCGGCACGCCGGGAAGTTCCTCACAGCTCCTGGGGTCG---CC--CCCA---CCCCATCCCCATC-CGGATGAGATGTTTT-----CAT-GAGTTACATAACTCACAGCCACCCAGTAACA-------------------------------------------CGATCGACCAACAGAGGCCTCACTCTCGGGAAACTGAGG- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3503233 195 - 108792865 ---------GTGGCTCTGGCACCACACACCAGACTCTGGGAACGCACAGGGAGCCCG-ACGCTGGGAAGTTATTCTCAGCCCCCGGGGCTG---CCATCCCG---CCCCCCGCCCTTC-CGGGTGGGATGTTTTGCTTTGGT-GAGTTACATAACTCACAGGCACCCAGAAACG-------------------------------------------CCATCGACTGACAGAGGCCTCGCTCTCAGGAAATGGAGG- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3148748 219 - 7082604 ---------GTGGCTCTGGCACCGCACACCAGGCTCTGGGAACGCGCGAGGAGCCCG--CGCTGGGAAGTCATCCTCAG-CTCCGGGGCTG---CCGT-CCG---CCCCTCGCCCGGC-CGCGCGGGATGGTTTGCTTCGGT-GACTTGCATAACTCACAGCCACGCAGCAACG---------------GAGGCCGCCTCTCGGAAACCGAGGGGTCTGATTGGCCGGCAGAGGCCTC-CCCTCGGGGAACCGAGG- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 635743 196 + 5243153 ---------ATGGCTCTGGCACCACACACCAGGCTCTGGGAACGCGCAAGGAACCCGCACGCTGGGAAGTTATTCTCAGCTCCTGGGGCTG---CTGTCCCG---CCCCTCGCCCATC-CAGGTGAGATGTTTTGCTTTGGT-GAGGTGCGTGACTCACAGCCACCCAGCAACA-------------------------------------------CGATCGACTAACAGAGGCCTCGCTCTCAGGAAACCGAGG- i cebCap1.NW_016107454v1 C 0 I 268 s aotNan1.NW_018509326v1 3377354 239 + 7587287 ---------AGGGCTCTGGCACCACACACCAGGCTCTGGGAACGCACAAGGAGCCCGCACGCTGGGAAGTTATTCTCAGCTCCTGGGGCTG---CCGTCCCG---CCCCTTGCCCATC-CAGGTGAGATGTTTTGCTTTGGT-GAGTTGCATAACTCACAGCCACCCAGCAACGCGATCGACTGACAGAGGGCTCGCTCTCAGGAAACCGAGGAGCCCGATCAGCCAACAGAGGCCTCACTCTCGGGAAACCAAGG- i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 674327 208 + 2232271 CAAAGTTTACTGA--ATTCTACCATAACCCAAGCACTGG-AAGACACAAGA--CCCTTACACTGGCAAATTACTCAAAATTCCTATAGTTAAGTCACTTGCATTTCTTTATATCCATCACAGGTAAAATGTTTTGCTTTCATCAAATTTCATAATC--CAACAACACATCAATA---------------G---------------------------CTCTCAGCCCCCTGAGGTCCCGCTCTTCGCAAATGCACTA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91443583 504 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=83124.000000 s hg38.chr2_KI270769v1_alt 102622 11 + 120616 AGCCCGGCCGA s panTro5.chr2A 3565080 11 + 111504155 AGCCCGGCCAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425390 11 + 114371477 AGCCCGGCCAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 303889 11 + 637652 AGCCCGGCCGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099408 11 + 81552678 AGCCCGGCCGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3363412 11 + 108979918 AGCCCGGCTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5075553 11 - 111193037 AGCCCGGCTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466768 11 + 3644372 AGCCCGGCTGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3423382 11 - 10304083 AGCCCGGCTGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3524204 11 - 107702431 AGCCCGGCTGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1055314 11 + 1565135 AGCCCGGCTGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3417985 11 - 13651311 AGCCCGGCTGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3503428 11 - 108792865 GGTCTGATTGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3148967 11 - 7082604 GGTCTGATTGG i saiBol1.JH378218 C 0 I 40 s aotNan1.NW_018509326v1 3377593 11 + 7587287 AGCCCAGCCAA i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 674535 11 + 2232271 AGCCAAGTATA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91443583 504 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 635939 268 + 5243153 I a score=114679.000000 s hg38.chr2_KI270769v1_alt 102633 16 + 120616 --GGCAGGGGAGCCC-ATC s panTro5.chr2A 3565091 16 + 111504155 --GGCAGGGGAGCCC-ATC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425401 16 + 114371477 --GGCAGGGGAGCCC-ATC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 303900 16 + 637652 --GGCAGGGGAGCCC-ATC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099419 16 + 81552678 --GGCAGGGGAGCCC-ATC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3363423 16 + 108979918 --GGCAGGGGAGCCC-ATC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5075564 16 - 111193037 --GGCAGGGGAGCCC-ATC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466779 16 + 3644372 --GGCAGGGGAGCCC-ATC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3423393 16 - 10304083 --GGCAGGGGAGCCC-ATC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3524215 16 - 107702431 --GGCAGGGGAGCCC-ATC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1055325 16 + 1565135 --GGCAGGGGAGCCC-ATC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3417996 16 - 13651311 --GGCAGGTGAGCCC-ATC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3149018 16 - 7082604 --GGTAAGGGAGCCC-GTG i saiBol1.JH378218 I 40 C 0 s aotNan1.NW_018509326v1 3377604 17 + 7587287 --GGTAAGGGAGCCCTGTG i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 674546 17 + 2232271 AGCACAAGGGTGTCA-TT- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91443583 504 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 635939 268 + 5243153 I e calJac3.chr14 3503439 0 - 108792865 C a score=203429.000000 s hg38.chr2_KI270769v1_alt 102649 22 + 120616 TTAGTTGTCAGAGCTGCGTCAT s panTro5.chr2A 3565107 22 + 111504155 TTCGTTGTCAGAGCTGCGTCAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425417 22 + 114371477 TTCGTTGTCAGAGCTGCGTCAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 303916 22 + 637652 TTAGTTGTCAGAGCTGCATCAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099435 22 + 81552678 TTAGTTGTCAGAGCTGCATCAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3363439 22 + 108979918 TTAGTTGTCAGAGCTGCATCCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5075580 22 - 111193037 TTAGTTGTCAGAGCTGCATCCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466795 22 + 3644372 TTAGTTGTCAGAGCTGCATCAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3423409 22 - 10304083 TTAGTTGTCAGAGCTGCATCAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3524231 22 - 107702431 TTAGTTGTCAGAGTTGCATCAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1055341 22 + 1565135 TTAGTTGTCAGAGCTGCATCAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418012 22 - 13651311 TTAGTTGTCACAGCTGCATCAT i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3149034 20 - 7082604 TTAGCCGCCAGAGCTGC--CAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 636207 22 + 5243153 TTAGTTGTCAGAGCTGCATCAT i cebCap1.NW_016107454v1 I 268 C 0 s aotNan1.NW_018509326v1 3377621 22 + 7587287 TTAGTTGTCAGAGCTGCATCAT i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 674563 22 + 2232271 TTAGTTGCCAAAACTGTGTTAT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91443583 504 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e calJac3.chr14 3503439 0 - 108792865 C a score=595124.000000 s hg38.chr2_KI270769v1_alt 102671 66 + 120616 GAGAACAAAATGTCTGAAGCTGCCAACTTCACCACAGAACTAGGGAAAACACCTCCATCAATAGAA s panTro5.chr2A 3565129 66 + 111504155 GAGAACAAAATGTCTGAAGCTGCCAACTTCACCACAGAACTAGGGAAAACACCTCCATCAACAGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425439 66 + 114371477 GAGAACAAAATGTCTGAAGCTGCCAACTTCACCACAGAACTAAGGAAAACACCTCCATCAACAGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 303938 66 + 637652 GAGAACAAAATGTCTGAAGCTGCCAACTTCACCACAGAACTAGGGAAAACACCTCCATCAACAGAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099457 65 + 81552678 GAGAACAAAATGTCTGAAGCTGCCAACTTCACCACAGAACTA-GGAAAACACCTCCATCAACAGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3363461 65 + 108979918 GAGAACGAAACGTCTGAAGCTGCCAACTTCACCACATAACTAGGGAAAACACCTCCATCAACGG-A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5075602 65 - 111193037 GAGAACGAAACGTCTGAAGCTGCCAACTTCACCACATAACTAGGGAAAACACCTCCATCAACGG-A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466817 65 + 3644372 GAGAACGAAACGTCTGAAGCTGCCAACTTCACCACATAACTAGGGAAAACACCTCCATCAACAG-A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3423431 66 - 10304083 GAGAACAAAATGTCTGAAGCTGCCAACTTCACCACATAACTAGGGAAAACACCTCCATCAACAGAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3524253 66 - 107702431 GAGAACGAAATGTCTGAAGCTGCCAACTTCACCACATAACTAGGGAAAACACGTCCAACAACAGAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1055363 66 + 1565135 GAGAACAAAATGTCTGAAGCTGCCAACTTCACCACATAACTAGGGAAAACACCTCCATCAACAGAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418034 66 - 13651311 GAGAACGAAATGTCTGAAGCTGCCAACTTCACCACATAACTAGGGAAGACACCCCCATCAACAGAA i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3149054 62 - 7082604 GAGAATGAAACGTCTGAAGCTGCC-CCTTCACCGCGTAACCAGG--AAACACCT-CGTCAGTAGAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 636229 64 + 5243153 GAGAGTGAAATGTCTGAAGCTGCCAACTTCACCGCATAACTAGG--AAACACCTCCATCAGTAGAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3377643 64 + 7587287 GAGAATGAAACGTCTGAAGCTGCCAGCTTCACCGCATAACTAGG--AAATACCTCCATCAGTAGAA i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91444087 66 - 120129022 GAAAAGCATGTGTCTGAAGCTGTGAGCCTCACTGTATAATCTGGGAACACACACCCACCATTATAA i mm10.chr12 I 504 I 3216 s dasNov3.JH580157 674585 65 + 2232271 GAAAATGAAAATTCTGAAACTGCAAACGTCCCTGTGTAATTAGGCAAAA-ACACCCATCAACAGAA i dasNov3.JH580157 C 0 C 0 e otoGar3.GL873658 2583869 1291 + 5252280 I e calJac3.chr14 3503439 0 - 108792865 C a score=580520.000000 s hg38.chr2_KI270769v1_alt 102737 79 + 120616 CCAGACGATCTCCTTGT---GGACACGCAGGAAAACGTCTG-CAGTG--GTTA-CCTCACACG-CCCCT-----CCTTGG--GGGACAGGCAGG s panTro5.chr2A 3565195 80 + 111504155 CCAGACGATCTCCTTGT---GGACACGCAGGAAAACGTCTG-CAGTG--GTTA-CCTCACACGCCCCCT-----CCTTGG--GGGACAGGCAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425505 80 + 114371477 CCAGACGATCTCCTTGT---GGACACGCAGGAAAACGTCTG-CAGTG--GTTA-CCTCACACGCCCCCT-----CCTTGG--GGGACAGGCAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304004 80 + 637652 CCAGACGATCTCCTTGT---GGACACGCAGGAAAACGTCTG-CAGTG--GTTA-CCTCACACGCCCCCT-----CCTTGG--GGGACGGGCAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099522 79 + 81552678 CCAGACGATCTCCTCGT---GGACACGCAGCAAAACGTCTG-CAGTG--GTTA-CCTCACGCGCCCCCT------CTTGG--GGGACAGGCAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3363526 79 + 108979918 CCAGACGATCTCCTCGT---GAACACGCAGCAAAACGTCCG-CAGTG--GTTA-CGTCACACG-CCCCT-----CCTTGG--GGGGCAGACAGG i rheMac8.chr13 C 0 I 322 s macFas5.chr13 5075667 79 - 111193037 CCAGACGATCTCCTCGT---GAACACGCAGCAAAACGTCCG-CAGTG--GTTA-CGTCACACG-CCCCT-----CCTTGG--GGGACAGACAGG i macFas5.chr13 C 0 I 322 s macNem1.NW_012011978v1 3466882 88 + 3644372 CCAGACGATCTCCTCGT---GAACACGCAGCAAAACGTTCTCCAGTGCTGTTACCATCACATG-GCCCTTCCTCCCTTGG--GGGACAGACAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3423497 79 - 10304083 CCAGACGATCTCCTCGT---GAACATGCAGCAAAACGTCTG-CAGTG--GTTA-CCTCACACG-CCCCT-----CCTTGG--GGGACAGACAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3524319 79 - 107702431 CCAGACGATCTCCTCGT---GAACACACAGCAAAACGTCTG-CAGTG--GTCA-CCTCACACG-CCCCT-----CCTTGG--CGGACAGACAGG i chlSab2.chr14 C 0 I 326 s manLeu1.NW_012104432v1 1055429 79 + 1565135 CCAGACGATCTCCTCAT---GAACACGCAGCAAAACGTCTG-CAGTG--GTTA-CCTCACACG-CCCCT-----CCTTGG--AGGACAGACAGG i manLeu1.NW_012104432v1 C 0 I 320 s colAng1.NW_012118821v1 3418100 80 - 13651311 CCAGACGATCTCCTCAT---GAACACGCAGCAAAACATCTG-CAGTG--GTTA-CCTCACACGCCCCCT-----CGTTGG--GGGACAGACAGG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3149116 79 - 7082604 GCA-GCGATCCCCGCGT---GGACGCACAGCAGCACGTCCG-CAGTG--AGTC-CCTCACGTGCCGCCT-----CCTGGG--GGGACAGGCGGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 636293 79 + 5243153 CTA-ACGATCTCCGCGT---GGACACACAGCAGCACGTTTG-CGGTG--AGTA-CCTCACATGCCGCCT-----CCTTGG--AGGACAGGCAGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3377707 79 + 7587287 CCA-ACGATCTCCGCGT---GGACAGGCAGCAGCACGTTTG-CAGTG--AGTA-CCTCACGTGTCGCCT-----CCTTGG--GGAACAGGCAGG i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 674650 84 + 2232271 CTACATTATCTCCTCACAAGAGAAACAGTATAGAACTTGTG-AAATG--ATTA-CACTATCTGCCACTT-----CCTTGGAAGGAAAAGGCAG- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e calJac3.chr14 3503439 0 - 108792865 C a score=10500.000000 s hg38.chr2_KI270769v1_alt 102816 1 + 120616 G s panTro5.chr2A 3565275 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425585 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304084 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099601 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3363927 1 + 108979918 g i rheMac8.chr13 I 322 C 0 s macFas5.chr13 5076068 1 - 111193037 g i macFas5.chr13 I 322 C 0 s macNem1.NW_012011978v1 3466970 1 + 3644372 G i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3423576 1 - 10304083 G i cerAty1.NW_012000820v1 C 0 I 318 s chlSab2.chr14 3524724 1 - 107702431 g i chlSab2.chr14 I 326 C 0 s manLeu1.NW_012104432v1 1055828 1 + 1565135 g i manLeu1.NW_012104432v1 I 320 C 0 s colAng1.NW_012118821v1 3418180 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3149195 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 636372 1 + 5243153 G i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3377786 1 + 7587287 G i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 674734 0 + 2232271 C e otoGar3.GL873658 2583869 1291 + 5252280 I e calJac3.chr14 3503439 0 - 108792865 C a score=75675.000000 s hg38.chr2_KI270769v1_alt 102817 8 + 120616 -AAAGAAAG s panTro5.chr2A 3565276 8 + 111504155 -AAAGAAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425586 8 + 114371477 -AAAGAAAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304085 8 + 637652 -AAAGAAAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099602 8 + 81552678 -AAAGAAAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3363928 8 + 108979918 -aaagaaaG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076069 8 - 111193037 -aaagaaaG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3466971 8 + 3644372 -AAAGAAAG i macNem1.NW_012011978v1 C 0 I 318 s cerAty1.NW_012000820v1 3423895 8 - 10304083 -aaagaaaG i cerAty1.NW_012000820v1 I 318 C 0 s chlSab2.chr14 3524725 8 - 107702431 -aaagaAAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1055829 8 + 1565135 -aaagaaaG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418181 8 - 13651311 -AAAGAAAG i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3149196 8 - 7082604 -AAAGAAAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 636373 8 + 5243153 -AAAGAAAG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3377787 8 + 7587287 -AAAGAAAG i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 674734 5 + 2232271 TAAAG---- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e calJac3.chr14 3503439 0 - 108792865 C a score=96986.000000 s hg38.chr2_KI270769v1_alt 102825 11 + 120616 GTCATGGAGCC s panTro5.chr2A 3565284 11 + 111504155 GTCATGGAGCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425594 11 + 114371477 GTCATGGAGCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304093 11 + 637652 GTCATGGAGCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099610 11 + 81552678 ATCATGCAGCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3363936 11 + 108979918 GTCATGGAGCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076077 11 - 111193037 GTCATGGAGCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3467297 11 + 3644372 GTCATGGAGCC i macNem1.NW_012011978v1 I 318 C 0 s cerAty1.NW_012000820v1 3423903 11 - 10304083 GTCATGGAGCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3524733 11 - 107702431 GTCATGGAGCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1055837 11 + 1565135 GTCATGGAGCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418189 11 - 13651311 GTCATGGAGCC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3149204 11 - 7082604 GTCGCGGAGCC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 636381 11 + 5243153 GTCATGGAGCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3377795 11 + 7587287 GTCATAGAGCC i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 674739 8 + 2232271 TTCAAAGA--- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e calJac3.chr14 3503439 0 - 108792865 C a score=678438.000000 s hg38.chr2_KI270769v1_alt 102836 79 + 120616 CACAGTGGCTCATTTACATCCCTCAGTTCGTAACCACCAGCCTCTACAGGCTCTCTGAAGAGCTCGCAGAAGCACACGT s panTro5.chr2A 3565295 79 + 111504155 CACAGTGGCTCGTTTACATGCCACAGTTCATAACCACCAGCCTCTACAGGCTCTCTGAAGAGCTCGCAGAAGCACACGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425605 79 + 114371477 CACAGTGGCTCGTTTACATGCCACAGTTCATAACCACCAGCCTCTACAGGCTCTCTGAAGAGCTCGCAGAAGCACACGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304104 79 + 637652 CACAGTGGCTCGTTTACATCCCACAGTTCATAACCACCAGCCTCTACAGGCTCTCTGGAGAGCTCGCAGAAGCACATGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099621 75 + 81552678 CACAGT-GCTCG-TTGCATCCCACAGTTCATAACCACCAGCCTCTACAGGCTCTCTGGAGGGCTCGCAGAAGCCCAC-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3363947 79 + 108979918 CACAGTGGCTCGTTTACATCCCACAGTTCATAACCACCAACCTCTACAGGCTCTCTGGAGAGCTCACAGAAGCACACGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076088 79 - 111193037 CACAGTGGCTCGTTTACATCCCACAGTTCATAACCACCAACCTCTACAGGCTCTCTGGAGAGCTCACAGAAGCACACGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3467308 79 + 3644372 CACAGTGGCTCGTTTACATCCCACAGTTCATAACCACCAACCTCTACAGGCTCTCTGGAGAGCTCACAGAAGCACACGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3423914 79 - 10304083 CACAGTGGCTCGTTTACATCCCACAGTTCATAACCACCAACCTCTACAGGCTCTCTGGAGAGCTCGCAGAAGCAcacgc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3524744 79 - 107702431 CACAGTGGCTCGTTTACATCCCACAGTTCATAACCACCAACCTCTACAGGCTCTCTGGAGAGCTCGCAGAAGCACACGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1055848 79 + 1565135 CACAGTGGCTCGTTTACATCCCACAGTTCATAACCACCAACCTCTACAGGCTCTCTGGAGAGCTTGCAGAAGCAcacgc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418200 79 - 13651311 CACAGGGGCTCGTTTACATCCCACATTTCATAACCACCAACCCCTACAGGCTCTCTGGCGAGCTCGCAGAAGCACACGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3503439 78 - 108792865 CAGAGTGGCTGCTTCACGTCCCACAATTCATGACTACCAGCCTCT-CAGGCTCTCTGGAGAGCTCACAGAAGCACATAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3149215 77 - 7082604 CGGAGCGGCTGCTG-ACGCCCCGCAGTTCCTAGCCGCCGGCCTCC-CGGGCTCTCCGGAGAGCTCACAGGAGCACCCGC i saiBol1.JH378218 C 0 I 9 s cebCap1.NW_016107454v1 636392 78 + 5243153 CAGAGTGGCTGCTTCATGTCCCACAATTCATAACCACCAGCCTCT-CAGGGTGTCTGGAGAGCTCACAGAAGCACACGT i cebCap1.NW_016107454v1 C 0 I 514 s aotNan1.NW_018509326v1 3377806 78 + 7587287 CAGAGTGGCTGCTTCACATCCCACAATTGATAACCGCCAGCCTCT-CAGGCTCTCTGGAAAGCTCACAGCAGCACACGT i aotNan1.NW_018509326v1 C 0 I 519 s dasNov3.JH580157 674747 45 + 2232271 -----------------AAACCTGAATTTTTAG--------CTCGTCAGGCTCCCTAGAGGGCCCCCAGG--------- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=15620.000000 s hg38.chr2_KI270769v1_alt 102915 4 + 120616 GCAC-- s panTro5.chr2A 3565374 4 + 111504155 GCAC-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425684 4 + 114371477 GCAC-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304183 4 + 637652 GCAC-- i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3364026 4 + 108979918 ACAC-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076167 4 - 111193037 ACAC-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3467387 4 + 3644372 ACAC-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3423993 4 - 10304083 acac-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3524823 4 - 107702431 ACAC-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1055927 4 + 1565135 acac-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418279 4 - 13651311 ACAC-- i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3149301 4 - 7082604 GCAC-- i saiBol1.JH378218 I 9 I 430 s dasNov3.JH580157 674792 4 + 2232271 --GCTG i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 636470 514 + 5243153 I e aotNan1.NW_018509326v1 3377884 519 + 7587287 I e calJac3.chr14 3503517 0 - 108792865 C e nomLeu3.chr19 3099696 0 + 81552678 C a score=31012.000000 s hg38.chr2_KI270769v1_alt 102919 13 + 120616 ACACAGGCACGCA s panTro5.chr2A 3565378 13 + 111504155 ACGCAGGCACACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425688 13 + 114371477 ACGCAGGCACACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304187 13 + 637652 ACAGAGGCACGCA i gorGor5.CYUI01015435v1 C 0 C 0 s rheMac8.chr13 3364030 6 + 108979918 ACGCAG------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076171 6 - 111193037 ACGCAG------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3467391 6 + 3644372 ACGCAG------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3423997 13 - 10304083 acgcaggcacgca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3524827 13 - 107702431 ACGCAGGCACACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1055931 13 + 1565135 acgcaggcacgca i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418283 13 - 13651311 ACGCAGGCAGGCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3503517 12 - 108792865 -TGCAGGCATGCA i calJac3.chr14 C 0 I 435 s saiBol1.JH378218 3149735 13 - 7082604 acaCACACAAGCA i saiBol1.JH378218 I 430 C 0 s dasNov3.JH580157 674796 8 + 2232271 ACTCTGGA----- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 636470 514 + 5243153 I e aotNan1.NW_018509326v1 3377884 519 + 7587287 I e nomLeu3.chr19 3099696 0 + 81552678 C a score=43508.000000 s hg38.chr2_KI270769v1_alt 102932 11 + 120616 -GGTCCACACGC s panTro5.chr2A 3565391 11 + 111504155 -GGTCCACACGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425701 11 + 114371477 -GGTCCACACGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304200 11 + 637652 -GGTCCACACGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099696 10 + 81552678 --GTCCACACGC i nomLeu3.chr19 C 0 C 0 s cerAty1.NW_012000820v1 3424010 11 - 10304083 -ggtccacacgc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3524840 11 - 107702431 -GGTCCACACGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1055944 11 + 1565135 -ggtccacacgc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418296 11 - 13651311 -GGTCCACACGC i colAng1.NW_012118821v1 C 0 C 0 s saiBol1.JH378218 3149748 11 - 7082604 -GACCCACACGC i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 674804 12 + 2232271 GGGCCAAAGCAC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 636470 514 + 5243153 I e aotNan1.NW_018509326v1 3377884 519 + 7587287 I e calJac3.chr14 3503529 435 - 108792865 I e macNem1.NW_012011978v1 3467397 0 + 3644372 C e macFas5.chr13 5076177 0 - 111193037 C e rheMac8.chr13 3364036 0 + 108979918 C a score=280225.000000 s hg38.chr2_KI270769v1_alt 102943 51 + 120616 ATGCACAC----AAGTCCAACC---ACATGCATGAC-GATGTAAGCGCAGAAATGAGAC s panTro5.chr2A 3565402 51 + 111504155 ATGCACAC----AAGTCCAACC---ACATGCATGAT-GACGTGAGTGCAGAAACGAGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425712 51 + 114371477 ATGCACAC----AAGTCCAACC---ACATGCATGAT-GACGTGAGCGCAGAAACGAGAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304211 51 + 637652 ATGCACAC----AAGTCCAACC---ACATGCATGAT-GACGTGAGCACAGAAACGAGAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099706 51 + 81552678 AGGCACAC----ACGTCCAACC---ACATGCATGAC-GATGTGAGCACAGAAACGAGAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364036 52 + 108979918 --GCACAC----AAGCCCAACCTGTACATGCATGAG-GATGTGAGCACAGAAGCGAGAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076177 52 - 111193037 --GCACAC----AAGCCCAACCTGTACATGCATGAG-GATGTGAGCACAGAAGCGAGAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3467397 52 + 3644372 --GCACAC----AAGCCCAACCTGTACATGCGTGAG-GATGTGAGCACAGAAGCGAGAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3424021 51 - 10304083 atgcacac----aagcccaacc---acacgcaTGAG-GATGTGAGCACAGAAGCGAGAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3524851 51 - 107702431 AGGCACAC----AAGCCCAACC---ACACGCATGAT-GATGTGAGCGCAGAAACGAGAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1055955 51 + 1565135 atgcacac----aagcccaacc---acacgcaTGAC-GATGTGAGCACAGAAGCGAGAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418307 51 - 13651311 ATGCACAC----AAGCCCGACC---ACATGCAGGAC-GATGTGAGCCCAGAAACGAGAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3503964 55 - 108792865 acaCACACAAGTAGACGCACCT---GCACACATGACAGACGTGAGCAGAGACAGGAGA- i calJac3.chr14 I 435 C 0 s saiBol1.JH378218 3149759 47 - 7082604 ----ACAC----AGACGCACCT---GCACACGTGACAGACGCGAGCAGAGACAGGAGA- i saiBol1.JH378218 C 0 C 0 s dasNov3.JH580157 674816 39 + 2232271 ATGCACAC-----------------ACATGCAC--T-TATCTGGGCATCAAAACCAAAA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 636470 514 + 5243153 I e aotNan1.NW_018509326v1 3377884 519 + 7587287 I a score=3270624.000000 s hg38.chr2_KI270769v1_alt 102994 358 + 120616 CCCCTCCATCTCGGATTGGGTTTAATCTCCTGCAAATCAGCAAATCAGCAGCCACTCTGTGCAGTCAGGTGCCCACTGCAGCCCGGTTTGCCTTTCTAAATTTCA---TCTTAATTTAAGGAGGTaaagaatgaagtccacactccacaggataactacttctaagg-agctggaaagctgtctggcttATTGACACAAATTTAAGAAGGAATATTTCCTCCAAAGTC----TTGGGTGAACCACAGCAGCTTGGGCAGTGTGGACGTCTGGCGTCCTGAGCTTGTGCTGGGCTGGAAGGAGAGCGGGGG---AGTTTGTAAGGC-----------------------------------------------------------------------AGGTTGCAG-----------------------------------------------------------TGGTGTGG---------------------------------------------------GCGGGAGACA-----------GGGGTGGCGTTCACAGT s panTro5.chr2A 3565453 358 + 111504155 CCCCTCCATCTCGGATTGGGTTTAATCTCCTGCAAATCAGCAAATCAGCAGCCACTCTGTGCAGTCAGGTGCCCACTGCAGCCCGGTTTGCCTTTCTAAATTTCA---TCTTAATTTAAGGAGGTaaagaatgaagtccacactccacaggataactacttctgagg-agctggaaagctgtctggcttATTGACACAAATTCAAGAAGGAATATTTCCTCCAAAGTC----TTAGGTGAACCACAGCAGCTTGGGCAGTGTGGACGTCTGGCGTCCTGAGCTTGCGCTGGGCTGGAAGGAGAGTGGGGG---ATTTTGTAAGCC-----------------------------------------------------------------------AGGTTGCAG-----------------------------------------------------------TGGTGTGG---------------------------------------------------GCGGGAGACA-----------CGGGTGGCGTTCACAGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3425763 358 + 114371477 CCCCTCCATCTCGGATTGGGTTTAATCTCCTGCAAATCAGCAAATCAGCAGCCACTCTGTGCAGTCAGGTGCCCACTGCAGCCCGGTTTGCCTTTCTAAATTTCA---TCTTAATTTAAGGAGGTaaagaatgaagtccacactccacaggataactacttctgagg-agctggaaagctgtctggcttATTGACACAAATTCAAGAAGGAATATTTCCTCCAAAGTC----TTAGGTGAACCACAGCAGCTTGGGCAGTGTGGACGTCTGGCGTCCTGAGCTTGCGCTGGGCTGGAAGGAGAGTGGGGG---ATTTTGTAAGGC-----------------------------------------------------------------------AGGTTGCAG-----------------------------------------------------------TGGTGTGG---------------------------------------------------GCGGGAGACA-----------CGGGTGGCGTTCACAGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304262 355 + 637652 CCCCTCCATCTCGGATTGGGTTTAATCTCCTGCAAATCAGCAAATCAGCAGCCACTCTGTGCAGTCAGGTGCCCACTGCAGCCCGgtttgcctttctaaatttca---ccttaatttaaggaggtaaagaatgaagtccacactgcacaggat-actacttctaagg-agctggaaagctgtctggcttATTGACACAAATCTAAGAAGGAATATTTCCTCCAAAGTC----TTGGGTGAACCACAGCAGCTTGGGCAGTGTGGACGTCTGGCGTCCTGAGTTTGTGCTGGGCTGGAAGGAGATTGGGGG---ATTTTGTAAGCC-----------------------------------------------------------------------AGGTTGCAG-----------------------------------------------------------TGGTGTGG---------------------------------------------------GCGGGAGAC-------------GGGTGGCGTTCACAGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3099757 359 + 81552678 CCCCTCCATCTCGGATTGGGTTTAATCTCCTGCAAATCAGCAAATCAGCAGCCGCTTTATGCAGGCAGGTGCCCACTGCAGCCCGGTTTGCCTTTCTAAATTTCA---TCTTAATTTAAGGAGGTAAAGAATGAAGTCCACACTCCACAGGATAACTACTTCTAAGGAAGCTGGAAAACTGTCTGGCTTATTGACACAAATTCAAGAAGGAATATTTCCTCCGAAGTC----TTGGGTGAACCACAGCAGCTTGGACAGTGTGGACGTCTGGCGTCCTGAGCTTGTGCTGGGCTAGAAGGAGAGTGGGGG---ATTCTGTAAGCC-----------------------------------------------------------------------AGGTCGCAG-----------------------------------------------------------TGGTGTGG---------------------------------------------------GCAGGAGACA-----------GGGGTGGCGTTCACAGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364088 356 + 108979918 CCCCTCCGCCTTGGATTGGGTTTAAT---CTGCACATCGGCACATCAGCAGCCGCTCTGTGCAGTCAGGTGCCCACTGCAGCCCGGTTTGCCTTTCTACTGTTCA---TCTTAATTTAAGGAGGTAAAGAATGAAGTCCACTCTCCACAGGATAACTGCTTCTAAGGAAGCTGGAAAGCTGTCTGGCTTATTGACACAAATTTAAGAATGAATATTTCCTCCAAAGTC----TTGGGTGAAACACAGCAGCTTGGGCAGTGTGGACATCCGGCATCCTGAGCTTGTGCTGGGCTGGAAGGAGAGTGGGGG---GTGCTGTAAGCC-----------------------------------------------------------------------AGGTCGCAG-----------------------------------------------------------TGGGGTGG---------------------------------------------------GCAGGAGACA-----------GCGGTGGCGTCCACGGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076229 356 - 111193037 CCCCTCCGCCTTGGATTGGGTTTAAT---CTGCACATCGGCACATCAGCAGCCGCTCTGTGCAGTCAGGTGCCCACTGCAGCCCGGTTTGCCTTTCTACTGTTCA---TCTTAATTTAAGGAGGTAAAGAATGAAGTCCACTCTCCACAGGATAACTGCTTCTAAGGAAGCTGGAAAGCTGTCTGGCTTATTGACACAAATTTAAGAACGAATATTTCCTCCAAAGTC----TTGGGTGAAACACAGCAGCTTGGGCAGTGTGGACATCCGGCGTCCTGAGCTTGTGCTGGGCTGGAAGGAGAGTGGGGG---GTGCTGTAAGCC-----------------------------------------------------------------------AGGTCGCAG-----------------------------------------------------------TGGGGTGG---------------------------------------------------GCGGGAGACA-----------GCGGTGGCGTCCACGGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3467449 356 + 3644372 CCCTCCCGCCTTGGATTGGGTTTAAT---CTGCACATCGGCACATCAGCAGCCGCTCTGTGCAGTCAGGTGCCCACTGCAGCCCGGTTTGCCTTTCTACTGTTCA---TCTTAATTTAAGGAGGTAAAGAATGAAGTCCACTCTCCACAGGATAACTGCTTCTAAGGAAGCTGGAAAGCTGTCTGGCTTATTGACACAAATTTAAGAACGAATATTTCCTCCAAAGTC----TTGGGTGAAACACAGCAGCTTGGGCAGTGTGGACATCCGGCGTCCTGAGCTTGTGCTGGGCTGGAAGGAGAGTGGGGG---ATGCTGTAAGCC-----------------------------------------------------------------------AGGTCGCAG-----------------------------------------------------------TGGGGTGG---------------------------------------------------GCAGGAGACA-----------GCGGTGGCGTCCACGGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3424072 355 - 10304083 CCCCTCCGTCTTGGATTGGGTTTAAT---CTGCACATCGGCACATCAGCAGCGGCTTTGTGCAGTCAGGTGCCCACTGCAGCCCGGTTTGCCTTTCTACTGttca---tcttaatttaaagaggtaaagaatgaagtccactctccaaaggataactgcttctaaggaagctggaaagctgtctggcttATTGACACAAATTTAAGAACGAATATTTCCTCCAAAGTC----TTGGGTGAAACACAGCAGCTTGGGCAGTGTGGACCTCCGGCGTCCTGAGCTTGTGCTGGGCTGGAAGGAGAGT-GGGG---ATGCTGTAAGCC-----------------------------------------------------------------------AGGTCGCAG-----------------------------------------------------------TGGGGTGG---------------------------------------------------GCGGGAGACA-----------GGGGTGGTGTCCACGGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3524902 353 - 107702431 CCCCTCCGTCTTGGATTGGGTTTAAT---CTGCACATCAGCACATCAGCAGCGGCTTTGTGCAGTCAGGTGCCCACTGCAGCCCGGTTTGCCTTTCTACTGTTCA---TCTTAATTTAAGGAGGTAAAGAATGAAGTCCACTCTCCACAGGATAACTACTTCTAAGGAAGCTGGAAAGCTGTCTGGC---TTGACATAAATTTAAGAACAAATATTTCCTCCAAAGTC----TTGGGTGAAACACAGCAGCTTGGGCAGTGTGGACATCCGGCGTCCTGAGCTTGTGCTGGGCTGGAAGGAGAGTGGGGG---ATTCTGTAAGCC-----------------------------------------------------------------------AGGTCACAG-----------------------------------------------------------TGGGGTGG---------------------------------------------------GCGGGAGAGA-----------GGGGTGGCGTCCACAGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1056006 356 + 1565135 CCCCTCCGTCTTGGATTGGGTTTAAT---CTGCACATCGGCACATCAGCAGCCGCCCTGTGCAGTCAGGTGCCCACTGCAGCCCGGTTTGCCTTTCTACTGTTCA---TCTTACTTTAAGGAGGTAAAGAATGAAGTCCACTCTCCACAGGATAACTGCTTCTAAGGAAGCTGGAAAGCTGTCTGGCTTATTGACACAAATTTAAGAACGAATATTTCCTCCAAAGTC----TTGGGTGAAACACAGCAGCTTGGGCAGTGTGGACATCCGGCGTCCTGAGCTCGTGCTGGGCTGGAAGGAGAGTGGGGG---ATGCTGTAAGCC-----------------------------------------------------------------------AGGTCGCGG-----------------------------------------------------------TGGGGTGG---------------------------------------------------GCGGGAGACA-----------GGGGTGGCGTCCACGGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418358 354 - 13651311 CCCCGCCGTCTTGGATTGGGTTCAAT---CTGCACGTCGGCAAATCAGCAGTGGCTTTGTGCAGTCGGGTGCCCACTGCAGCCCGGTTTGCCTTTCTACGGTTCA---TCTCAATTTAAGGAGGTAAAGAATGAAGTCCGCTCTCCACAGGATAACTACTTCTAAGGAAGCTGGAAAGCTGTCTGGCTTCTTGACACAAATTTAAGAACGAATATTTCCTCCAAAGTC----TTGGGTGAAACACAGCAGCTTGGGCAGTGTGGACACCTAGCGTCCTGAGCTTGTGCTGGGCTGGAAGGAGAGTGGGGG---ATTCTGTAAGCC-----------------------------------------------------------------------AGGTCGCAG-----------------------------------------------------------CGGGGTGG---------------------------------------------------GCGGGAGAC-------------GGGTGGCGTTCACGGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504019 352 - 108792865 CCCCTTCATCTGGAACTGGGTTTAATCTCCTGCAAATCAGCCAGTCGGCAGCCGCTTTGTGCAGTCAGGTGCCCGCTGCAGCCCGGCTTGCCTTTCCGCTGCTCA---TGTTTATTGAAGGAGGTAACGAACGAAGTCCACACTCCACAGGACGATGACTTCTATGGAAGCTGGAAAACTGCCTGGCTTACTGACACAAATTTAAGAACGAATCTTTTCTCCAAAGTC----TTGGGTGAACTATGGCAGCGTGGGCAGTGTGGGCATCTGGTGCCCTGAGCT-------GGCTGGAAGGAGAGTGTGGT---ATTCTGTGAGCC-----------------------------------------------------------------------AGGTCGCAG-----------------------------------------------------------CAGTGTGG---------------------------------------------------GCGGGAGGCA-----------GGGGTGGCGTTCACAGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3149806 357 - 7082604 CCCCTTCATCTGGAATTGGGTTTAATCTCCTGCGAATCAGCCAGTCGGCAGCCACTTGGTGCAGTCAGGCGCCCGCTGCAGCCCGGCTGGCCTTTCCACTGCTCC---TTTTTATTGAAGGAGGTAAAGAACGAAGCCCACGATCCACAGGACCACTACTTCTAGGGAAGCCGGAAAGCTGCCTGGCTTACTGACACAAATTTAAGAACGAACATTTCCTCCAAAGTC----TTGGGTGAACTCTGGCAGCGTGGGCAGTGTGGCCGTCCGGCGCCCTGAGCT--CGCTGGGCTGGAAGGAGAGTGTGGG---TTTCTGTGAGCC-----------------------------------------------------------------------GGGTCGCAG-----------------------------------------------------------CGGTGTGG---------------------------------------------------GCGGGAGGCA-----------GGGGTGGCGTTCACAGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 636984 365 + 5243153 CCCCTTCATCTGGAATTGGGTTTAATCTCCTGTGAATCAGCCAATCGGCAGCCACTTTGTGCAGTCAGGTGCCTGCTGCAGCCCGGCTTGCCTTTCCACTGCTCA---TCTTTATTGAAGGAGGTAAAGAACGAAGTCCACACTCCACAG---CACAACTTCTACAGAAGCTGGAAAGCTGCCTGGCTTACTGACACAAATTTAAGAACGAATATTTCCTCCAAAGTC----TTGGGTGAACTATGGTAGTGTGGGCAGTGTGGGTGTCCGGCGCCCTGAGCT--GGCTGGGCTGGAAGGAGAGTGTGGT---ATTCTGTGAGCC-----------------------------------------------------------------------AGGTCGCAG-----------------------------------------------------------CGGTGTGG---------------------------------------------------GCGGGAGGCAGGGGTGGCATTGGGGTGGCATTCACAGT i cebCap1.NW_016107454v1 I 514 C 0 s aotNan1.NW_018509326v1 3378403 357 + 7587287 CCCCTTCATCTGGAATTGGGTTTAATGTCCTGCAAATCAGCCAGTCGGCAGCCACTGTGTGCAGTCAGGTGCCCGCTGCAGCCCGGCTTGCCTTTCCACTGCTCA---TCTTTATTGAAGGAGGTAAAGAACGAAGTCCACACTCCACAGGACAACTACTTCTATGGAAGCTGGAAAACTGCCTGGCTTACTGACACAAATTTAAGAATGAATGTTTCCTCTAAAGTC----TTGGGTGAACTATGGCAGCGTGGGCAGTGTGGGCATCTGGTGCCCTGAGCT--GGCTGGGCTGGAAGGAGAGTGTGGT---ATTCTGTGAGCC-----------------------------------------------------------------------AGGTCGCAG-----------------------------------------------------------CGGTGTGG---------------------------------------------------GTGGGAGGCA-----------GGGGTGGCGTTCACAGT i aotNan1.NW_018509326v1 I 519 C 0 s dasNov3.JH580157 674855 517 + 2232271 TCAATCTATTTATGAATTGGTTTTATTTCTTGCAAATCAGTAAATAA-------------------AAATGTC--------CCTTGTTTCCATTTCTACTGTCAAATTTTCTAGTTTCTTAAAGTTTAAACCCAA---CATTCCCCTCAAGATAACTACTTTGAAGGAAGGTGAAAAGTTGCCTGGCTTATCAACAC---TTAAACAATGAATACTTCCTCCAAATTCACCTATGAACTAACTACACAAGCTTCCGTAGTGTAAATTTCTGGATTTCCTTATCAGTGGTAAACCAACAGGAGAGTGGGGGGATATTCTCTAAACCATAGTTAAAAAGGTAGTTTAGGTgggaagagaatgtagctcaagcagatgggcatctgagtaccatatgggaggtcccgggttcggtttccagtgcttcctgcagaagacaagcaagaaagcaagctggcacaataggctggcatggtgagatgatgcaacaacgagacacaacggggaaacacaatgaaagatacaagcgggaagca-----------gaggtggctctaaccat i dasNov3.JH580157 C 0 I 250 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=1044232.000000 s hg38.chr2_KI270769v1_alt 103352 108 + 120616 GAGAGACGGCCAGGGGAGGCCCCTAGGAAGAATCCGCCCATCACAGTGGACGGAAGCCACGATTGGACGTGAGGCTTAATGTGAGCTCTGTGTACAAACAAAGCAACC s panTro5.chr2A 3565811 108 + 111504155 GAGAGACAGCCAGGGGAGGCCCCTAGGAAGAATCCGCCCATCACAGTGGATGGAAGCCACGATTGGACGTGAGGCTTAATGTGAGCTCTGTGTACAAACAAAGCAACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426121 108 + 114371477 GAGAGACAGCCAGGGGAGGCCCCTAGGAAGAATCCGCCCATCACAGTGGATGGAAGCCATGACTGGACGTGAGGCTTAATGCGAGCTCTGTGTACAAACAAAGCAACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304617 108 + 637652 GAGAGACAGCCAGGGGAGGCCCCTAGGAAGAATCCGCCCATCACAGGGGATGGAAACCACGATTGGATGTGAGGCTTAATGCGAGCTCTGTGTACAAACAAAGCAACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100116 108 + 81552678 GAGAGACAGCCAGGGGAGGCCCCTAGGAAGAATCTGCCCATCCCAGTGGATGGAAGCCACGATTGGACGTGAGGCTTAATGTGAGCTCTGGGTACAAACAAAGCAACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364444 108 + 108979918 GAGAGACAGCCAGGGGAGGCCCCTAGGAAGAATCTGCCCATCGCAGTGGATGCAAGCCACGATTGGATGTGAGGCTTAATGTGAGCTCTGTGTACAAACAAAGCAACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076585 108 - 111193037 GAGAGACAGCCAGGGGAGGCCCCTAGGAAGAATCTGCCCATCGCAGTGGATGCAAGCCACGATTGGATGTGAGGCTTAATGTGAGCTCTGTGTACAAACAAAGCAACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3467805 108 + 3644372 GAGAGACAGCCAGGGGAGGCCCCTAGGAAGAATCTGCCCATCGCAGTGGATGCAAGCCACGATTGGATGTGAGGCTGAATGTGAGCTCTGTGTACAAACAAAGCAACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3424427 108 - 10304083 GAGAGACAGCCAGGGGAGGCCCCTAGGAAGAATCTGCCCATCGCAGTGGATGCAAGCCACGATTGGATGTGAGGCTTAATGTGAGCTCTGTGTACAAACAAAGCAACC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525255 108 - 107702431 GAGAGACAGCCAGGGGAGGCCCCTAGGAAGAATCTGCCCATCACAGTGGATGCAAGCCATGACTGGACGTGAGGCTTAATGCGAGCTCTGTGTACAAACAAAGCCACC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1056362 108 + 1565135 GAGAGACAGCCAGGGGAGGCCCCTGGGAAGAATCTGCCCATCGCAGTGGATGCAAGCCACGACTGGATGTGAGGCTTAATGTGAGCTCTGTGTACAAACAAAGCAACC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418712 108 - 13651311 GAGAGACAGCCAGGGGAGGCCCCTAGGAAGAATCTGCCCATCACGGCGGATGCAAGCCACGACTGGACGTGAGGCTTCATGTGAGCTCTGTGTACAAACAAAGCAACC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504371 107 - 108792865 GAGAGACAG-CAGGGGAGGCCCCTGGGAAGAATCTGCCTGTCACGGCGGATGGAAGCCGTGATCAGACGTGAGGCTAAATGTGAGCTCTGTGTACAAACAAGGCAACC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3150163 104 - 7082604 GCGAGACAGCCAGGGGAGGCCCCCGGAAAGAATCTGCCCGTCCCGGTGGATGGAAGCCGTGATCAGACGTGAGGCTAAACGTGAGCTCCGTGTACAAA----GCATCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 637349 108 + 5243153 GAGAGACAGCCAGGGGAGGCCCCCGGGAAGAATCTGCCCGTCAGGGTGGATGGAAGCCGCGATCAGACGTGAGGCTAAATGTGAGCTGCGTGTACAAACAAAGCATCC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3378760 107 + 7587287 G-GACACAGTCAGGGGAGGCCCCTGGGAAGAATCTGCCCGTCACAGTGGATGGAAGCCACGATCAGGCGTGAGGCTAAATGTGAACTCCGTGTACAAACAAAGTAACC i aotNan1.NW_018509326v1 C 0 I 24 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 675372 250 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=97556.000000 s hg38.chr2_KI270769v1_alt 103460 12 + 120616 AGCTCATTCTGT s panTro5.chr2A 3565919 12 + 111504155 GGCTCATTCTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426229 12 + 114371477 GGCTCATTCTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304725 12 + 637652 GGCTCATTCTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100224 12 + 81552678 GGCTCATTCCGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364552 12 + 108979918 AGCTCATTCTGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076693 12 - 111193037 AGCTCATTCTGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3467913 12 + 3644372 AGCTCATTCTGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3424535 12 - 10304083 AGCTCATTCTGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525363 12 - 107702431 AGCTCATTCTGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1056470 12 + 1565135 AGCTCATTCTGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418820 12 - 13651311 AGCTCATTCTGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504478 11 - 108792865 -GCTTGTTGTGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3150267 11 - 7082604 -GCTCATTGTGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 637457 11 + 5243153 -GCTCATTGTGT i cebCap1.NW_016107454v1 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 675372 250 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I e aotNan1.NW_018509326v1 3378867 24 + 7587287 I a score=22548.000000 s hg38.chr2_KI270769v1_alt 103472 5 + 120616 A-GACC s panTro5.chr2A 3565931 5 + 111504155 A-GACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426241 5 + 114371477 A-GACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304737 6 + 637652 AGGACC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100236 6 + 81552678 AGGACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364564 6 + 108979918 AGGACC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076705 6 - 111193037 AGGACC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3467925 6 + 3644372 AGGACC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3424547 6 - 10304083 AGGACC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525375 6 - 107702431 AGGACC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1056482 6 + 1565135 AGGACC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418832 6 - 13651311 AGGACC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504489 5 - 108792865 AGGAC- i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3150278 5 - 7082604 AGGAC- i saiBol1.JH378218 C 0 I 1 s cebCap1.NW_016107454v1 637468 5 + 5243153 AGGAC- i cebCap1.NW_016107454v1 C 0 I 28 s dasNov3.JH580157 675622 5 + 2232271 -AGATC i dasNov3.JH580157 I 250 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e aotNan1.NW_018509326v1 3378867 24 + 7587287 I a score=61663.000000 s hg38.chr2_KI270769v1_alt 103477 11 + 120616 AGTATTAAACA s panTro5.chr2A 3565936 11 + 111504155 AGTATTAAACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426246 11 + 114371477 AGTATTAAACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304743 11 + 637652 AGTATTAAACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100242 11 + 81552678 AATATTAAACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364570 11 + 108979918 AATATTAAACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076711 11 - 111193037 AATATTAAACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3467931 11 + 3644372 AATATTAAACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3424553 11 - 10304083 AATATTAAACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525381 11 - 107702431 AATATTAAACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1056488 11 + 1565135 AATATTAAACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418838 11 - 13651311 AATATTAAACA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504495 5 - 108792865 ------AACCA i calJac3.chr14 I 1 I 2 s saiBol1.JH378218 3150284 5 - 7082604 ------AGCCA i saiBol1.JH378218 I 1 I 2 s dasNov3.JH580157 675627 9 + 2232271 AGAATCAAA-- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 637473 28 + 5243153 I e aotNan1.NW_018509326v1 3378867 24 + 7587287 I a score=164788.000000 s hg38.chr2_KI270769v1_alt 103488 25 + 120616 TGCTTATATTTTAAAA-TACAATTTT s panTro5.chr2A 3565947 25 + 111504155 TGCTTATATTTTAAAA-TACAATTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426257 25 + 114371477 TGCTTATATTTTAAAA-TACAATTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304754 25 + 637652 TGCTTATATTTTAAAC-TACAATTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100253 25 + 81552678 TGCTTATACTTTAAAA-TACAATTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364581 25 + 108979918 TGCTTATATTTTAAAA-TACAATTTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076722 25 - 111193037 TGCTTATATTTTAAAA-TACAATTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3467942 25 + 3644372 TGCTTATATTTTAAAA-TACAATTTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3424564 25 - 10304083 TGCTTATATTTTAAAA-TACAATTTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525392 25 - 107702431 TGCTTATATTTTAAAA-TACAATTTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1056499 25 + 1565135 TGCTTATATTTTAAAA-TACAATTTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418849 25 - 13651311 TGCTTATATTTTAAAA-TACAATTTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504502 19 - 108792865 TGTTTATATTTTA-----AC-ATCT- i calJac3.chr14 I 2 C 0 s saiBol1.JH378218 3150291 20 - 7082604 TGTGTATATTTTA-----ACAATCT- i saiBol1.JH378218 I 2 C 0 s aotNan1.NW_018509326v1 3378891 20 + 7587287 TGTTTATATTTTA-----ACAATCC- i aotNan1.NW_018509326v1 I 24 C 0 s dasNov3.JH580157 675636 26 + 2232271 TTTTTATATTTTAAAGCTACTATTTT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 637473 28 + 5243153 I a score=748950.000000 s hg38.chr2_KI270769v1_alt 103513 80 + 120616 GATGCAAGAATTGAATTTAGTAGCTATA-TTTTCTAATCAAACATTAGAATATGTGGTCTGTACATATACGGCCAGAGGAC s panTro5.chr2A 3565972 80 + 111504155 GATGCAAGAATTGAATTTAGTAGCTATA-TTTTCTAATCAAACATTAGAATATGTGGTCTGTACATATACGGCCAGAGGAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426282 80 + 114371477 GATGCAAGAATTGAATTTAGTAGCTATA-TTTTCTAATCAAACATTAGAATATGTGGTCTGTACATATACGGCCAGAGGAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304779 80 + 637652 GATGTAAGAATTGAATTTAGTAGCTATA-TTTTCTAATCAAACATTAGAATACGTGGTCTGTACATATACGGCCAGAGGAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100278 80 + 81552678 GATGCAAGAATTGAATTTAGTAGCTGTA-TTTTCTAATCAAACATTAGAATATGTGGTCTGTACATATACGGCCAGAGGAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364606 79 + 108979918 GATGCAAGAATTGAATTTAGTAGCTATATTTTTCTAATCAAAAATTAGAATACGTGGTC--TACATATACGGCCAGAGGAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076747 79 - 111193037 GATGCAAGAATTGAATTTAGTAGCTATATTTTTCTAATCAAAAATTAGAATACGTGGTC--TACATATACGGCCAGAGGAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3467967 79 + 3644372 GATGCAAGAATTGAATTTAGTAGCTATATTTTTCTAATCAAAAATTAGAATACGTGGTC--TACATATACGGCCAGAGGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3424589 79 - 10304083 GATGCAAGAATTGAATTTAGTAGCTATATTTTTCTAATCAAAAATTAGAATACGTGGTC--TACACATACGGCCAGAGGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525417 79 - 107702431 GATGCAAGAATTGAATTTAGTAGCTATATTTTTCTAATCAAAAATTAGAATACGTGGTC--TACTTATACGGCCAGAGGAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1056524 79 + 1565135 GATGCAAGAATTGAATTTAGTAGCTATATTTTTCTAATCAAAAATCAGAATACGTGGTC--TACACATACGGCCAGAGGAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418874 79 - 13651311 GATGCAAGAATTGAATTTAGTAGCTGTATTTTTCTAATCAAAAATCAGAATACGTGGTC--TACATATACGGCCAGAGGAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504521 80 - 108792865 GATGCAATAACTGAATTTAGTAGCTATA-ATTTCTAATCAAAAATTAGAATACGTGGTCTGTACACATATGGCCAGAGGAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3150311 80 - 7082604 GATGCAATAAGTGAACGTAGTAGCTATA-ATTTCTAATTAAAAATTAGAATGCGTGGTTTGTACCCATATGGCCAGAGGAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 637501 80 + 5243153 GATGCAATAATTGAATGTAGTAGCTATA-ATTTCTAATCAAAAATTAGAATACGTGGTCTGTACACATATGGCCAGAAGAC i cebCap1.NW_016107454v1 I 28 C 0 s aotNan1.NW_018509326v1 3378911 80 + 7587287 GATGCAATAATTGAATTTAGTAGCTATA-ATTTCTAATCAAAAATTAGAATCCGTGGTCTGTACACATATGGCCAGAGGAC i aotNan1.NW_018509326v1 C 0 I 139 s dasNov3.JH580157 675662 65 + 2232271 -GCACAAAAATTGTACCAAATTGC--------------CAAAAGTTAGGATACATGGTCTATTCGTGTATGGCACAAAGA- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=42441.000000 s hg38.chr2_KI270769v1_alt 103593 5 + 120616 AGAAT s panTro5.chr2A 3566052 5 + 111504155 AGAAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426362 5 + 114371477 AGAAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304859 5 + 637652 AGAAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100358 5 + 81552678 AGAAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364685 5 + 108979918 AGAAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076826 5 - 111193037 AGAAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3468046 5 + 3644372 AGAAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3424668 5 - 10304083 AGAAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525496 5 - 107702431 AGAAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1056603 5 + 1565135 AGAAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418953 5 - 13651311 AGAAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504601 5 - 108792865 AAGAT i calJac3.chr14 C 0 I 20 s saiBol1.JH378218 3150391 5 - 7082604 AAGAT i saiBol1.JH378218 C 0 I 696 s cebCap1.NW_016107454v1 637581 5 + 5243153 AAGAT i cebCap1.NW_016107454v1 C 0 I 21 s dasNov3.JH580157 675727 3 + 2232271 --AAT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e aotNan1.NW_018509326v1 3378991 139 + 7587287 I a score=19344.000000 s hg38.chr2_KI270769v1_alt 103598 3 + 120616 GTC s panTro5.chr2A 3566057 3 + 111504155 GTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426367 3 + 114371477 GTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304864 3 + 637652 GTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100363 3 + 81552678 GTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364690 3 + 108979918 GTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076831 3 - 111193037 GTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3468051 3 + 3644372 GTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3424673 3 - 10304083 GTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525501 3 - 107702431 GTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1056608 3 + 1565135 GTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418958 3 - 13651311 GTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504626 2 - 108792865 -CC i calJac3.chr14 I 20 I 1 s saiBol1.JH378218 3151092 2 - 7082604 -CC i saiBol1.JH378218 I 696 I 1 s dasNov3.JH580157 675730 3 + 2232271 GAC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 637586 21 + 5243153 I e aotNan1.NW_018509326v1 3378991 139 + 7587287 I a score=811382.000000 s hg38.chr2_KI270769v1_alt 103601 115 + 120616 AGAAATGGGGACTGC-------------AGGAAATAAACTGAGCTACGCAGTCACTGTGAGCCTAGCTCCTCCCT--GCTTCCA-CCTAGTTCCAGTCCGATGAGGAGTGAGTCTCTCTTCGTCCTTCCCT--- s panTro5.chr2A 3566060 115 + 111504155 AGAAATGGGGACTGC-------------AGGAAATAAACTGAGCTACGCAGTCACTGTGAGCCTAGCTCCTCCCT--GCTTCCA-CCTAGTTCCAGTCCGATGAGGAGTGAGTCTCTCTTCGTCCTTCCCT--- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426370 115 + 114371477 AGAAATGGGGACTGC-------------AGGAAATAAACTGAGCTACGCAGTCACTGTGAGCCTAGCTCCTCCCT--GCTTCCA-CCTAGTTCCAGTCCGATGAGGAGTGAGTCTCTCTTCGTCCTTCCCT--- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304867 114 + 637652 AGAAATGGGGACTGC-------------AGGAAATAAACTGAGCTGCGCAGTCACTGTGAGCCTAGCTCCTCCCT--GCTTCCA-CCTAGTTCCAGTCCCATGAGGAGTGAG-CTCTCTTCATCCTTCCCT--- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100366 108 + 81552678 AGAAATGGGGACTGC-------------AGAAAATGAACTGAGCTACGCGGCCACCGTGAGCCTAGCTCCTCCCT--GCTTCCA-CCTAGTTCCAGTCTGA-------TGAGTCTGTCTTCGTCCTTCCCT--- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364693 111 + 108979918 AGAAATGGGGACTAC-------------AGGACATGAACCGAGCTACGCAGTCACTGTGAGCCTAGCTCCTCCCT--GCCTCCA-CCTAGTTCCAGTCTGATGAGGAGT----CTCTCTTCATCCTTCCCT--- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076834 111 - 111193037 AGAAATGGGGACTAC-------------AGGACATAAACCGAGCTACGCAGTCACTGTGAGCCTAGCTCCTCCCT--GCCTCCA-CCTAGTTCCAGTCTGATGAGGAGT----CTGTCTTCATCCTTCCCT--- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3468054 111 + 3644372 AGAAATGGGGACTAC-------------AGGACATAAACCGAGCTACGCAGTCACTGTAAGCCTAGCTCCTCCCT--GCTTCCA-CCTAGTTCCAGTCTGATGAGGAGT----CTGTCTTCATCCTTCCCT--- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3424676 111 - 10304083 AGAAATGGGGACTGC-------------AGGACATAAACCGAGCTACGCAGTCACTGTGAGCCTAGCTCGTCCCT--GCTTCCA-CCTAGTTCCAGTCTGATGAGGAGT----CTGTCTTCATCCTTCCCT--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525504 111 - 107702431 AGAAATGGGGACTGC-------------AGGACATAAACCGAACTACACAGTCACTGTGAGCCTAGCTCCTCCCT--GCTTCCA-CCTAGTTCCAGTCTGATGAGGAGT----CTGTCTTCATCCTTCCCT--- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1056611 111 + 1565135 AGAAATGGGGACTGC-------------AGGACATAAACCGAGCTACGCAGTCACTGTGAGCCTCGCTCCTCCCT--GCTTCCA-CCTAGTTCCAGTCTGATGAGGAGT----CTGTCTTCATCCTTCCCT--- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3418961 111 - 13651311 AGAAATGGGGACTGC-------------AGGACATAAACCGAGCTACGCAGTCACTGCGAGCCTCGCTCCTGCCT--GCTTCCA-CCTAGTTCCAGTCTGATGAGGAGT----CTGTCTTCGTCCTTCCCT--- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504629 111 - 108792865 AGAAATGGGGACTACA------------AAAAAATAAAGTGAGGCACGCAGTCCCCGCGGACCCAGCTCCTCCCTG-GCTTCCA-CCTAGCTCCAGTCTGATGAGGAGT----CTATCTTT-TGCTTCCT---- i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3151095 108 - 7082604 AGCAATGGGGACGAC-------------AGAAAACCAAGCGAGGCAGGCAGT-CCCGGGGACCCAGCTCCTCCCTG-GCTTCC--CCCAGCTCCAGCGTGATGAGGAAT----CTGTCTTC-TCCTTCCT---- i saiBol1.JH378218 I 1 C 0 s cebCap1.NW_016107454v1 637607 108 + 5243153 AGAAATGGGGACTAC-------------AGAAAATAAACTGAGGCACGCAGT-CCTGTGGACCCAGCTCCTCCCTG-GCTTCC--ACCAGCTCCAGTGTGATGAGGAGT----CTGTCTTC-TCCTTCCT---- i cebCap1.NW_016107454v1 I 21 C 0 s dasNov3.JH580157 675733 125 + 2232271 CAGAATAGAGACTATAAAAAATAAACTGAAAAAATAAACTGAGATATGCAATAATTACAACTTTAGCTGTTACCTATATTTTTATCTTTATTCCAATTC--TGTTGAGT----CTACC---ATGCTTCCTTTGT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e aotNan1.NW_018509326v1 3378991 139 + 7587287 I a score=610044.000000 s hg38.chr2_KI270769v1_alt 103716 56 + 120616 TCTGTAAGAGGTCAATTTAGGCTTTTTTAAAATGGAGAGTTCAGGGTCATGAGCTG s panTro5.chr2A 3566175 56 + 111504155 TCTGTAAGAGGTCAATTTAGGCTTTTTTAAAATGGAGAGTTCAGGGTCATGAGCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426485 56 + 114371477 TCTGTAAGAGGTCAATTTAGGCTTTTTTAAAATGGAGAGTTCAGGGTCATGAGCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 304981 56 + 637652 TCTGTAAGAGGTCAATTTAGGCTTTTTTAAAATGGAGAGTTCAGGGTCATGAGCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100474 56 + 81552678 TCTGGAAGAGGTCAATTTAGGCTTTTTTAAAATGGAGAGTTCAGGGTCATGAGCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364804 56 + 108979918 TCTGTAACAGGTCAATTTAGGCTTTTTTAAAATGAAGAGTTCAGGGTCATGAGCTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5076945 56 - 111193037 TCTGTAACAGGTCAATTTAGGCTTTTTTAAAATGAAGAGTTCAGGGTCATGAGCTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3468165 56 + 3644372 TCTGTAACAGGTCAATTTAGGCTTTTTTAAAATGAAGAGTTCAGGGTCATGAGCTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3424787 56 - 10304083 TCTGTAACAGGTCAATTTAGGCTTTTTTAAAATGAAGAGTTCAGGGTCATGAGCTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525615 56 - 107702431 TCTGTAACAGGTCAATTTAGGCTTTTTTAAAATGAAGAGTTCAGGGTCATGAGCTG i chlSab2.chr14 C 0 I 70 s manLeu1.NW_012104432v1 1056722 56 + 1565135 TCTGTAACAGGTCAATTTAGGCTTTTTTAAAATGAAGAGTTCAGGGTCATGAGCTG i manLeu1.NW_012104432v1 C 0 I 140 s colAng1.NW_012118821v1 3419072 56 - 13651311 TCTGTAACAGGTCAGTTTAGGCTTTTTAAAAATGGAGAGTTCAGGGTCATGAGCTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504740 56 - 108792865 TCTGGAAGAGGTCAATTTAGGCTTTTTTAAAATGGAGAGTTCAGGGCTGTGAGCTG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3151203 56 - 7082604 TCTGGAAGAGGTCACTTTAGGCTTTTTTTAAATGGAGAGTTGAGGGCTGTGAGCTG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 637715 56 + 5243153 TCTGGAAGAGGTCAATTTAGGCTTTTTTAAAATGCAGAGTTGAGGGCTGTGAGCCG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3379130 56 + 7587287 TCTGGAAGAGGTCAATTTAGGCTTTTTTAAAATGGAGAGTTCAGGGCTGTGAGCTG i aotNan1.NW_018509326v1 I 139 C 0 s dasNov3.JH580157 675858 55 + 2232271 TCTATAATAGGTCAATTTAGGATTTTTT-AAATTAAGAATTCAGGATTATAAATTG i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=952526.000000 s hg38.chr2_KI270769v1_alt 103772 120 + 120616 ATAGCGGAGGCCTC-TTTA-------------------------------------------------------------------------------------------------------TCGTCATTTTTAATCAGCTCACACACAGAGACCATC--ACTGGGGC-CCTGGCTAAGGAGGGGCATCTGCTGACAGTCGCTGCTCAGAGGCCAGCGGAGCGTCTC- s panTro5.chr2A 3566231 120 + 111504155 ATAGTGGAGGCCTC-TTTA-------------------------------------------------------------------------------------------------------TCGTCATTTTTAATCAGCTCACACACAGAGACCATC--ACTGGGGC-CCTGGCTAAGGAGGGGCATCTGCTGACAGCCACTGCTCAGAGGCCAGCGGAGCGTCTC- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426541 120 + 114371477 ATAGTGGAGGCCTC-TTTA-------------------------------------------------------------------------------------------------------TCGTCATTTTTAATCAGCTCACACACAGAGACCATC--ACTGGGGC-CCTGGCTAAGGAGGGGCATCTGCTGACAGCCACTGCTCAGAGGCCAGCGGAGCGTCTC- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 305037 120 + 637652 ATAGCGGAGGCCTC-TTTA-------------------------------------------------------------------------------------------------------TCGCCATTTTTAATCAGCTCACACACAGAGACCATC--ACTGGGGC-CCTGGCTAAGGAGGGGCATCTGCTGACAGCCGCTGCTCAGAGGCCAGCGGAGCGTCTC- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100530 120 + 81552678 ATAGCAGAGGGCTC-TTCG-------------------------------------------------------------------------------------------------------TCGTCGTTTTTAATCAGCTCACACACAGAGACCATC--ACTGGGGC-CCTGGCTAAGGAGGGGCATCTGCTGACAGCCGCTGCTCAGAGGCCAGCGGAGCATCTC- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364860 120 + 108979918 ACAGTGGAGGCCTC-TTGT-------------------------------------------------------------------------------------------------------TCGTCATTTTTAATCAGCTCACACACACAGCCCATC--ACTGGCGC-CCTGGCTAAGGAGGGGCATCCGCTGACAGCCGCTGCTCAGAGGCCAGCAGAGCCTCTC- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5077001 120 - 111193037 ACAGTGGAGGCCTC-TTGT-------------------------------------------------------------------------------------------------------TCGTCATTTTTAATCAGCTCACACACACAGCCCATC--ACTGGCGC-CCTGGCTAAGGAGGGGCATCCGCTGACAGCCGCTGCTCAGAGGCCAGCAGAGCCTCTC- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3468221 190 + 3644372 ACAGTGGAGGCCTC-TTGTTCGTCATTTTTA---------------------------ATCAGCTCACACACAGAGCCCATCACTGGCGCCCTGGCTAATA------GTGGAGGCCTCTTCATCGTCATTTTTAATCAGCTCACACACACAGCCCATC--ACTGGCGC-CCTGGCTAAGGAGGGGCATCCGCTGACAGCCGCTGCTCAGAGGCCAGCAGAGCCTCTC- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3424843 190 - 10304083 ACAGTGGAGGCCTC-TTGTTCGTCATTTTTAATCAGCTCACACACACAGCCCATCACTG---------------------------GCGCCCTGGCTAATA------GTGGAGGCCTCTTCATCATCATTTTTAATCAGCTCACACACACAGCCCATC--ACTGGCGC-CCTGGCTAAGGAGGGGCATCTGCTGACAGCCGCTGCTCAGAGGCCAGCAGAGCCTCTC- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525741 120 - 107702431 ATAGTGGAGGCCTC-TTCG-------------------------------------------------------------------------------------------------------CCGTCATTTTTAATCAGCTCACACACACAGCCCATC--ACTGGCGC-CCTGGCTAAGGAGGGGCATCTGCTGACAGCCGCTGCTCAGAGGCCAGCAGAGCCTCTC- i chlSab2.chr14 I 70 C 0 s manLeu1.NW_012104432v1 1056918 120 + 1565135 ATAGTGGAGGCCTC-TTCG-------------------------------------------------------------------------------------------------------TCGTCATTTTTAATCAGCTCACACACACAGCCCATC--ACTGGCGC-CCTGGCTAAGGAGGGGCATCTGCTGACAGCCGCTGCTCAGAGGCCAGCAGAGCCTCTC- i manLeu1.NW_012104432v1 I 140 C 0 s colAng1.NW_012118821v1 3419128 119 - 13651311 ACAGTGGAGGCCTC-TTGG-------------------------------------------------------------------------------------------------------TCGTCATTTTTAATCAGCTCACACACAGAGCCC-TC--ACTGGCGC-CCTGGCTAAGGAGGGGCATCCGCTGACAGCCGCTGCTCAGAGGCCAGCAGAGCCTCTC- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504796 85 - 108792865 ATAGAGGAGGCCTT-GTCA-------------------------------------------------------------------------------------------------------TCGTCACTTTCCATCAGCTCACACGCAGGGACCATC--ACTGGGGC-CTTGGCTAAGGAG-----------------------------------GGAGCCTCTC- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3151259 119 - 7082604 ATGGAGGAGACCTT-GTCA-------------------------------------------------------------------------------------------------------TGCTCGTTTTCCATCAGCTCACACGCAGGGACCGTC--CCTGGGGC-CCTGGCTAAGGAG-GGCGTCCACCGACAGCCGCTGCTCAGAGGCCAGCGGCGCCTCTT- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 637771 119 + 5243153 ACAGAGGCGGCCTC-GTCA-------------------------------------------------------------------------------------------------------TCGTCACTTTCCATCAGCTCACACGCAGGGACTGTC--CCTGGGGC-CCTGGCTGAGGAG-GGCGTCCGCTGACAGCCACTGCTCAGAGGCCAGCAGAGCCTCTC- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3379186 122 + 7587287 ATAGAGGAGGCCTTGGTCG-------------------------------------------------------------------------------------------------------TCGTCGTTTTCCATCAGCTCACACGCAAGGACCGTCAACTGGGGGC-CCTGGCTAAGGAG-GGCGTCCGCTGACAGCCGCTGCTCAGAGGCCAGCGGAGCCTCTC- i aotNan1.NW_018509326v1 C 0 I 2288 s dasNov3.JH580157 675913 155 + 2232271 ATAGATGAGAATTC-CTTA--------------------------------------------------------------TTTGAAGGGCAGAAATAACAAAATATATGCAAAGCTC----TAACCATTTTTAATTTGATCATACACAGTAGCAATT--ACTGAAGCATCTGGCTGATAAGATGCATCTAATAATAG---CTTTTAAGTAGACAGCAGAGC-TCTCT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=445176.000000 s hg38.chr2_KI270769v1_alt 103892 61 + 120616 ACCGGGCTCTCCATTCTTCCTTCTACACTTGAATGATAAGGATCgcaaatttaaagtaaaa s panTro5.chr2A 3566351 61 + 111504155 ACTGGGCTCTCCAGTCTTCCTTCTACACTTGAATGATAAGGATCgcaaatttaaagtaaaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426661 61 + 114371477 ACTGGGCTCTCCAGTCTTCCTTCTACACTTGAATGATAAGGATCgcaaatttaaagtaaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 305157 60 + 637652 ACCGGGCTCTCCAGTCTTCCTTCTACAC-TGAATGATAAGGATCgcaaatttaaagtaaaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100650 61 + 81552678 ACCGGGCTCTCCAGTCTTCCTTCTACACTTCAATGATAAGGATtgcaaatttaaagtaaaa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3364980 61 + 108979918 ACCGGGCTCCCCAGTCTTCCTTCTACACTTGAATGGTAAGGATCgcaaatttaaggtaaaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5077121 61 - 111193037 ACCGGGCTCCCCAGTCTTCCTTCTACACTTGAATGGTAAGGATCgcaaatttaaggtaaaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3468411 61 + 3644372 ACCGGGCTCCCCAGTCTTCCTTCTACACTTGAATGGTAAGGATCgcaaatttaaggtaaaa i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3425033 61 - 10304083 ACCGGGCTCCCCAGTCTTCCTTCTACACTTGAATGGTAAGGATCgcaaatttaaggtaaaa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525861 61 - 107702431 ACTGGACTCCCCAGTCTTCCTTCTTCACTTGAATGGTAAGGATtgcaaatttaaggtaaaa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1057038 61 + 1565135 ACCGGGCTCCCCAGTCTTCCTTCTACACTTGAATGGTAAGGATCGCAAATTTCAGGtaaaa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3419247 60 - 13651311 ACCGGGCTCCCCAGTCTTCCTTCTACACTTG-ATGGTAAGGATCGCACatttaaggtaaaa i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504881 57 - 108792865 GTGGGGCCGTCCAG---CTCTTCTACAC-TGAATGAGGAGGCTCAGAAATGTaaagtaaaa i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3151378 57 - 7082604 GGGGGTCTGTCCAG---CTCTTCTACGC-TGAATGATGAGGATCACaaatttaaagtaaaa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 637890 57 + 5243153 GTGGGGCTGTCCAG---CTCTTCTACAC-TGAATGATGAGGATCCCaaatttaaagtaaaa i cebCap1.NW_016107454v1 C 0 C 0 s dasNov3.JH580157 676068 50 + 2232271 ACTCATTTACCAA--CTCTCTTCTAGACAAAAATGATAAGGA---------CAAAGAAAAA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e aotNan1.NW_018509326v1 3379308 2288 + 7587287 I a score=296280.000000 s hg38.chr2_KI270769v1_alt 103953 39 + 120616 tcttgagccccccaactgactgaatggaacccgttggcc s panTro5.chr2A 3566412 39 + 111504155 tcttgagccccccaactgactgaatggaacccgttggcc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426722 39 + 114371477 tcttgagccccccaactgactgaatggaacccgttggcc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 305217 39 + 637652 tcttgagccccccaactgactgaatggaacccgttggcc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100711 30 + 81552678 tcctgagccccccaactgactgaatg---------ggcc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3365041 39 + 108979918 tcttaagccccccaattaactgaatggaccccgttggcc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5077182 39 - 111193037 tcttaagccccccaattaactgaatggaccccgttggcc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3468472 39 + 3644372 tcttaagccccccaattaactgaatggaccccgttggcc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3425094 39 - 10304083 tcttaagccccccaattaactgaatggaccccgttggcc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525922 39 - 107702431 tcttaagccccccaactaactgaatggaccccgttggcc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1057099 39 + 1565135 tcttaagccccccaattaactgaatggaccccgttggcc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3419307 39 - 13651311 tcttaagccccccaactaactgaatggaccccgttggcc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3504938 38 - 108792865 ttgtaag-cccccaactgactgaatggaccccgttggcc i calJac3.chr14 C 0 I 16 s saiBol1.JH378218 3151435 37 - 7082604 tcgt-ag-ccccccactgactgaatggacccccttggcc i saiBol1.JH378218 C 0 I 16 s cebCap1.NW_016107454v1 637947 38 + 5243153 tcgtaag-cccccaactggctgaatggaaccctttggcc i cebCap1.NW_016107454v1 C 0 I 1192 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 676118 0 + 2232271 C e otoGar3.GL873658 2583869 1291 + 5252280 I e aotNan1.NW_018509326v1 3379308 2288 + 7587287 I a score=16562.000000 s hg38.chr2_KI270769v1_alt 103992 2 + 120616 aa s panTro5.chr2A 3566451 2 + 111504155 aa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426761 2 + 114371477 aa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 305256 2 + 637652 aa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100741 2 + 81552678 aa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3365080 2 + 108979918 aa i rheMac8.chr13 C 0 I 20 s macFas5.chr13 5077221 2 - 111193037 aa i macFas5.chr13 C 0 I 16 s macNem1.NW_012011978v1 3468511 2 + 3644372 aa i macNem1.NW_012011978v1 C 0 I 20 s cerAty1.NW_012000820v1 3425133 2 - 10304083 aa i cerAty1.NW_012000820v1 C 0 I 20 s chlSab2.chr14 3525961 2 - 107702431 aa i chlSab2.chr14 C 0 I 20 s manLeu1.NW_012104432v1 1057138 2 + 1565135 aa i manLeu1.NW_012104432v1 C 0 I 20 s colAng1.NW_012118821v1 3419346 2 - 13651311 aa i colAng1.NW_012118821v1 C 0 I 20 s calJac3.chr14 3504992 2 - 108792865 aa i calJac3.chr14 I 16 C 0 s saiBol1.JH378218 3151488 2 - 7082604 aa i saiBol1.JH378218 I 16 C 0 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 676118 0 + 2232271 C e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 637985 1192 + 5243153 I e aotNan1.NW_018509326v1 3379308 2288 + 7587287 I a score=10696.000000 s hg38.chr2_KI270769v1_alt 103994 4 + 120616 cctt s panTro5.chr2A 3566453 4 + 111504155 cctt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426763 4 + 114371477 cctt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 305258 4 + 637652 cctt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100743 4 + 81552678 cctt i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5077239 4 - 111193037 cctt i macFas5.chr13 I 16 C 0 s calJac3.chr14 3504994 4 - 108792865 cctt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3151490 4 - 7082604 cctt i saiBol1.JH378218 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 676118 0 + 2232271 C e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 637985 1192 + 5243153 I e aotNan1.NW_018509326v1 3379308 2288 + 7587287 I e colAng1.NW_012118821v1 3419348 20 - 13651311 I e manLeu1.NW_012104432v1 1057140 20 + 1565135 I e chlSab2.chr14 3525963 20 - 107702431 I e cerAty1.NW_012000820v1 3425135 20 - 10304083 I e macNem1.NW_012011978v1 3468513 20 + 3644372 I e rheMac8.chr13 3365082 20 + 108979918 I a score=6049.000000 s hg38.chr2_KI270769v1_alt 103998 7 + 120616 aaaaaac- s panTro5.chr2A 3566457 7 + 111504155 aaaaaac- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426767 7 + 114371477 aaaaaac- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 305262 7 + 637652 aaaaaac- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100747 7 + 81552678 aaaaaat- i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 3504998 7 - 108792865 -aaaaccc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3151494 7 - 7082604 -aaaaacc i saiBol1.JH378218 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 676118 0 + 2232271 C e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 637985 1192 + 5243153 I e aotNan1.NW_018509326v1 3379308 2288 + 7587287 I e colAng1.NW_012118821v1 3419348 20 - 13651311 I e manLeu1.NW_012104432v1 1057140 20 + 1565135 I e chlSab2.chr14 3525963 20 - 107702431 I e cerAty1.NW_012000820v1 3425135 20 - 10304083 I e macNem1.NW_012011978v1 3468513 20 + 3644372 I e macFas5.chr13 5077243 0 - 111193037 C e rheMac8.chr13 3365082 20 + 108979918 I a score=14460.000000 s hg38.chr2_KI270769v1_alt 104005 10 + 120616 gagttcccag s panTro5.chr2A 3566464 10 + 111504155 gagttcccag i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426774 10 + 114371477 gagttcccag i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 305269 10 + 637652 gagttcccag i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100754 10 + 81552678 gagttcccag i nomLeu3.chr19 C 0 C 0 s saiBol1.JH378218 3151501 10 - 7082604 gagttcccag i saiBol1.JH378218 C 0 I 1479 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 676118 0 + 2232271 C e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 637985 1192 + 5243153 I e aotNan1.NW_018509326v1 3379308 2288 + 7587287 I e calJac3.chr14 3505005 0 - 108792865 C e colAng1.NW_012118821v1 3419348 20 - 13651311 I e manLeu1.NW_012104432v1 1057140 20 + 1565135 I e chlSab2.chr14 3525963 20 - 107702431 I e cerAty1.NW_012000820v1 3425135 20 - 10304083 I e macNem1.NW_012011978v1 3468513 20 + 3644372 I e macFas5.chr13 5077243 0 - 111193037 C e rheMac8.chr13 3365082 20 + 108979918 I a score=248080.000000 s hg38.chr2_KI270769v1_alt 104015 297 + 120616 ccggggcgcagtggctcaagcctgtaatcccagcactttgggaggccaaggcgggcagataatgaggtcaggagatcgagaccaacctgtccaacacagtgaaaccccgtctctaataaaaatacaaaaaattagccgggcgtggtggcagacgcctgtaatcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgagccaagatcgcgccactacactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaaaa s panTro5.chr2A 3566474 297 + 111504155 ccggggcgcggtggctcaagcctgtaatcccagcactttgggaggccaaggcgggcagatcatgaggtcaggagatcgagaccaacctgtccaacacagtgaaaccccgtctctaataaaaatacaaaaaattagccgggtgtggtggcagacgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgagccgagatcgcgccactacactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaaaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3426784 293 + 114371477 ccggggcgcggtggctcaagcctgtaatcccagcactttgggaggccaaggcgggcagatcatgaggtcaggagatcgagaccaacctgtccaacacagtgaaaccccgtctctaataaaaatacaaaaaattagccgggcgtggtggcagacgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgagccgagatcgcgccactacactccagcctgggtgacagagcgagactccgtct----acaaaaaaaaaaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 305279 281 + 637652 ccggggcgcggtggctcaagcctgtaatcccagca-tttgggaggccaaggcgggcagatcacgaggtcaggagatcgagaccaacct----aacacagtgaaaccccatctctaataaaaatacaaaaaattagccgggcgtggtggcagacgcctgtaatcccagctactcgggagtctgaggcaggagaatggcgtgaacctgggaggtagagcttgcagtgagccaagatcgcgccactacactccagcctgggtgacagagcgagactccgtctc-----------aaaaaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3100764 286 + 81552678 ccggggcgcggtggctcaagcctctaatcccagcactttgggaggccgaggagggcagatcatgaggtcaggagatgaagaccaacct----aacacagtgaaaccgcgtctctaataaaaatacaaaaaatcagctgggcgtggtggcaggtgcctgtagtcccagctacttgggaagctgaggcaggagaatgacgtgaacccgggaggcggagcttgcagtgagccaagatcgcgccactacactccagcctgggtgacagagcgagactccgtccc-------aaaaaaaaaa i nomLeu3.chr19 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e saiBol1.JH378218 3151511 1479 - 7082604 I e dasNov3.JH580157 676118 0 + 2232271 C e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 637985 1192 + 5243153 I e aotNan1.NW_018509326v1 3379308 2288 + 7587287 I e calJac3.chr14 3505005 0 - 108792865 C e colAng1.NW_012118821v1 3419348 20 - 13651311 I e manLeu1.NW_012104432v1 1057140 20 + 1565135 I e chlSab2.chr14 3525963 20 - 107702431 I e cerAty1.NW_012000820v1 3425135 20 - 10304083 I e macNem1.NW_012011978v1 3468513 20 + 3644372 I e macFas5.chr13 5077243 0 - 111193037 C e rheMac8.chr13 3365082 20 + 108979918 I a score=36682.000000 s hg38.chr2_KI270769v1_alt 104312 7 + 120616 aaaaaat s panTro5.chr2A 3566771 7 + 111504155 aaaaaaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3427077 7 + 114371477 aaaaaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 305560 7 + 637652 aaaaaac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3101050 7 + 81552678 aaaaaat i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3365102 7 + 108979918 aaaaaat i rheMac8.chr13 I 20 C 0 s macFas5.chr13 5077243 7 - 111193037 aaaaaat i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3468533 7 + 3644372 aaaaaat i macNem1.NW_012011978v1 I 20 C 0 s cerAty1.NW_012000820v1 3425155 7 - 10304083 aaaaaat i cerAty1.NW_012000820v1 I 20 C 0 s chlSab2.chr14 3525983 7 - 107702431 aaaaaat i chlSab2.chr14 I 20 C 0 s manLeu1.NW_012104432v1 1057160 7 + 1565135 aaaaaat i manLeu1.NW_012104432v1 I 20 C 0 s colAng1.NW_012118821v1 3419368 7 - 13651311 aaaaaat i colAng1.NW_012118821v1 I 20 C 0 e mm10.chr12 91444153 3216 - 120129022 I e saiBol1.JH378218 3151511 1479 - 7082604 I e dasNov3.JH580157 676118 0 + 2232271 C e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 637985 1192 + 5243153 I e aotNan1.NW_018509326v1 3379308 2288 + 7587287 I e calJac3.chr14 3505005 0 - 108792865 C a score=6097778.000000 s hg38.chr2_KI270769v1_alt 104319 993 + 120616 gagttcccaggcacgatg-gacgggaggtcagacacaccccactataccccctcccttttgggatttagacacaactggccagcattcatgtt-aaaatagagatggtgagaccagagaacagactgtggcaataagaca-caaatcacacacaggacctaaggcctggccaggctacagcgaagtctcgcaccctgaacctaaataagaaact------ctgtcctcaccaccaccaaggttttcttctccagcagctaaaccagcgtt-ggccttgagatgagcaagatgaaaacaagtcgtagtttatccaccacccgatgctggctaactggccctgttccaccagccgtaactacagctttgatggaacaagagaccgatttcagtaacttcctctggacaagaataagcccatggatgggctctggccggctgatagaggctgagcactgggagccttcatgtccctgtttcacctttagaagtgcagagcctgcctgggatgcacgtagatgttaagtctcctctccaaggtgaacatgggttgtatg-taa-gtggatgtttgttcaatacacatgcgtcaggaccac-ttcatgaatattcacagctcctcctgtaacctgttgaatatgtatgatcctccagcccattcagcataaagctcctg------ccccttctcctccaagatgcctgtctgcggtctctgcgggaggctgtgcttcccagcctgcgggatgccaccttgcagagtgtaactctttacaagaaataatgtctttagg-tgggcatggtggctcacacctgtaatcccaacactttgggaggcccaggcggatggatcacccaaggtcaggagttcgagaccagcctgg-caacatggtgaaaccccatctccactgaaaatac-aaaaaaaattagccgggtgtggtggtgca--cgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggtt s panTro5.chr2A 3566778 993 + 111504155 gagttcccaggcacgatg-gacgggaggtcagacacaccccactataccccctcccttttgggatttagacacaactggccagcattcatgtt-aaaatagagatggtgagaccagagaacagactgtggcaataagaca-caaatcacacacaggacctaaggcctggccaggctacagcgaagtctcacaccctgagcttaaataagaaact------ctgtcctcaccaccacaaaggttttcttctccagcagctaaaccagtgcc-ggccttgagatgagcaagatgaaaacaatttgtagtttatccaccacccgatgctggctaactggccctgttccaccagccgtaactacagctttgatggaacaagagaccgatttcagtaacttcctctggacaagaataagcccgtggatgggctctggccggctgatagaggctgagcgctgggagccttcatgtccctgtttcacctttagaagcgcagagcctgcctgggatgcacgtagatgttaagtctcctctccaaggtgaacacgagttgtatg-taa-gtggatgtttgttcaatacacatgcatcaggaccac-ttcatgaatattcacagctcctcctgtaacctgttgaatatgtatgatcctccagcccattcagcataaagctcctg------cccctactcctccaagatgcctgtctgcggtctctgcgggaggctgtgcttcccagcctgcgggatgccaccttgcagagtgtaactctttacaagaaatcatgtctttagg-tgggcatggtggctcacacctgtaatcccaacactttgggaggcccaggcggatggatcacccaaggtcaggagttcaagaccagcctgg-caacatggtgaaaccccatctccactgaaaatac-aaaaaaaattagccgggtgtggtggtgca--cgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggtt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3427084 993 + 114371477 gagttcccaggcacgatg-gacgggaggtcagacacaccccactataccccctcccttttgggatttagacacaactggccagcattcatgtt-aaaatagagatggtgagaccagagaacagactgtggcaataagaca-caaatcacacacaggacctaaggcctggccaggctacagcgaagtctcgcaccctgagcttaaataagaaact------ctgtcctcaccaccacaaaggttttcttctccagcagctaaaccagtgcc-ggccttgagatgagcaagatgaaaacaatttgtagtttatccaccacccgatgctggctaactggccctgttccaccagccgtaactacagctttgatggaacaagagaccgatttcagtaacttcctctggacaagaataagcccgtggatgggctctggccggctgatagaggctgagcgctgggagccttcatgtccctgtttcacctttagaagcgcagagcctgcctgggatgcacgtagatgttaagtctcctctccaaggtgaacacgagttgtatg-taa-gtggatgtttgttcaatacacatgcatcaggaccac-ttcatgaatattcacagctcctcctgtaacctgttgaatatgtatgatcctccagcccattcagcataaagctcctg------cccctactcctccaagatgcctgtctgcggtctctgcgggaggctgtgcttcccagcctgcgggatgccaccttgcagagtgtaactctttacaagaaatcatgtctttagg-tgggcatggtggctcacacctgtaatcccaacactttgggaggcccaggcggatggatcacccaaggtcaggagttcaagaccagcctgg-caacatggtgaaaccccatctccactgaaaatac-aaaaaaaattagccgggtgtggtggtgca--cgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggtt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 305567 995 + 637652 gagttcccaggcacgatg-gacgggaggtcagacacaccccactataccccctcccttttggggtttagacacaactggccagcattcatgtt-aaaatagagatggtgagaccagagaacagactgtggcaataagaca-caaatcacacacaggacctaaggcctggccaggctacagcgaagtctcgcaccctgcgcctaaataagaaact------ctgtccttaccaccacaaaggttttcttctccagcagctaaaccagcgtt-ggccttgagatgagcaagatgaaaacaatttgtagtttatccaccacccgatgctggctaactggccctgttccaccagccgtaactacagctttgatggaacaagagaccgatttcagtaacttcctctggacaagaataagcccatggatgggctctggccggctgacagaggctgggcgctgggagccttcatgtccctgtttcacctttagaagcgcagagcctgcctgggatgcacgtagatgttaagtctcctctccaaggtgaacatgggttgtatgttat-gtggatgtctgttcaagacacatgcgtcaagaccac-ttcatgaatattcacagctcctcctgtaacctgttgaatatgtatgatcctccagcccattcagcataaagctcctg------ccccttctcctccaaggtgcctgtctgcggtctctgcgggaggctgtgcttcccagcctgcgtgatgccaccttgcagaatgtaactctttacaagaaatcatgtctttaggctgggcatggtggctcacacctgtagtcccaacactttgggaggcccaggtggatggatcacccaaggtcaggagttcgagaccagcctgg-caacatggtgaaaccccatctccactgaaaatac-aaaaaaaattagctgggtgtggttttgca--cacctgtaatcccagctactcaggaggctgaggcaggacaatcgcttgaacccaggaggcagaggtt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3101057 993 + 81552678 gagttcccaggcacgatgagactggaggtcagacacaccccaccataccccctcccttttggggtttagacacaactggccagcattcatgtt-aaaatagagatggtgagaccacagaacagactgtggcaataagaca-caaatcacacacaggacctaaggcctggccatgctacagcaaagtctcacaccctgtgcttaaataagaaa--------ctgtcctcaccaccacaaaggttttcttctccagcagctaaaccagcgttaggccttgagatgagcaggatgaaaacaatttgtagtttatccactacccgatgctggctaactggctccgttccaccagccttaactacagctttgatggaacaagagaccgatttcagtaacttcctctagacaagaatgagcccatggatgggctctggctggctgacagaggctgagcgctgggagccttcacgtccgtgtttcacctttagaagcgcagagcctgcctgggatgcacgtagatgtttagtctcctctccaaggtgaacgtggg-tgtatg-taacgtggatgtttgttcaatacacatgcaccaggaccac-ttcctgaatattcacagctcctcctgtaacctgttgaatatgtatgatcctccagcccgttcagcataaagctcctg------cctcttctcctccaaggtgcctgtctccggtctctgcgggaggctgtgcttcccagcctgcgggatgccaccttgcagagtgtaactctttacaagaaatcatgtctttaggctgggcatggtggctcacgcctgtaatcccaacactttgggaggcccaggcggatggatcacctgaggtcaggagttcgacaccagcctgg-caacatggtgaaaccccatctctgctaaaaat-c-caaaaaaatcagctgggtgtggtggcgcatgtgcctgtaatcccagctactcgggaggctgaggcaggagag--gcttgaacccaggaggcagaggtt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3365109 993 + 108979918 gagttcccaggcacgacgggatgggaggtcagacacgcttcac----acccctccctt-tggggtttagccaccactggccagcattcgtgtt-aaaagagagacggcgagaccacagaacagactgtggcaataagacg-caaatcacacacaggacttaaggctcagccaggctagagtgaagtct--caccctacacttaaataagaca--------ccgtcctcgccaccacgagggttttcttctccagcagctaaaccagcgac-ggcctcgagatgagcaagatggaaacaatttgtagtttgccccccacccgatgctgcctaactggccccgttccaccagccgtaactacagctttgatggaaaaagagactgatttcagtaacttcctctggacaagaataagcccatggatgggctctggccagctgacagaggctgagcactgggagccttcatgtccctgtttcaactttagaagcacagagcctgcctgcgacgcatttagatgttaagtctcctctctaaggtgaacgtgaattgtatgttac-gtggatgtttgttcaatacgcatgcgtcaggaccacctttatgaatattcaca-ctcctcctgtaacctgttgaatatgtatgatcctccaacccgttcagcataaagctcctgccccatccccttctcctacaaggggcctgtctctggtctctgcgcgagactgtgctccccagcctgcgggatgccaccttgcagactgtaactctttacaagaaatgatgtctttaggccgggcatggtggctcatgcctgaaatcccagcactttgggaggccaaggctgacggatcacctgaggtcaggagtccaagaccagcctgg-caacatggtgaaaccccatctctactaaaaatac-aaaaaaaattagctgggcgtggtggtacg--tgcctataatcccagctgctcgggaggctgagacaggagaatcgcttgaacccaggaggcagaggtt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5077250 994 - 111193037 gagttcccaggcacgacgggatgggaggtcagacacgcttcac----acccctccctt-tggggtttagccaccactggccagcattcgtgtt-aaaagagagacggcgagaccacagaacagactgtggcaataagacg-caaatcacacacaggacctaaggctcagccaggctagagtgaagtct--caccctacacttaaataagaca--------ccgtcctcgccaccacgagggttttcttctccagcagctaaaccagcgac-ggcctcgagatgagcaagatggaaacaatttgtagtttgccccccacccgatgctgcctaactggccccgttccaccagccgtaactacagctttgatggaaaaagagactgatttcagtaacttcctctggacaagaataagcccatggatgggctctggccagctgacagaggctgagcactgggagccttcatgtccctgtttcaacttcagaagcgcagagcctgcctgcgacgcatttagatgttaagtctcctctctaaggtgaacgtgaattgtatgttac-gtggatgtttgttcaataggcatgcgtcaggaccacctttatgaatattcacagctcctcctgtaacctgttgaatatgtatgatcctccaacccgttcagcataaagctcctgccccaaccccttctcctccaaggtgcctgtctctggtctctgcgcgagactgtgcttcccagcctgcgggatgccaccttgcagactgtaactctttacaagaaataatgtctttaggccgggcatggtggctcatgcctgaaatcccagcactttgggaggccaaggctgacggatcacctgaggtcaggagtccaagaccagcctgg-caacatggtgaaaccccatctctactaaaaatac-aaaaaaaattagctgggcatggtggtacg--tgcctataatcccagctgctcgggaggctgagacaggagaatcgcttgaacccaggaggcagaggtt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3468540 995 + 3644372 gagttcccaggcacgacgggatgggaggtcagacacgcttcac----acccctccctt-tggggtttagccaccactggccagcattcgtgtt-aaaagagagacggcgagaccacagaacagactgtggcaataagatg-caaatcacacacaggacctaaggctcagccaggctagagtgaagtct--caccctacacttaaataagaaa--------ccgtcctcaccaccacgagggttttcttctccagcagctaaaccagcgac-ggcctcgagatgagcaagatggaaacaatttgtagtttgccccccacccgatgctgcctaactggccccgttccaccagccgtaactacagctttgatggaaaaagagactgatttcagtaacttcctctggacaagaataagcccatggatgggctctggccagctgacagaggctgagcactgggagccttcatgtccctgtttcaactttagaagcgcagagcctgcctgcaacgcatttagatgttaagtctcctctctaaggtgaacgtgagttgtatgttac-gtggatgtttgttcaatacgcatgcgtcaggaccacctttatgaatattcacagctcctcctgtaacctgttgaatatatatgatcctccaacccgttcagcataaagctcctgccccaaccccttctcctacaaggtgcctgtctctggtctctgcgcgagactgtgcttcccagcctgcgggatgccaccttgcagactgtaactctttacaagaaataatgtctttaggccgggcatggtggctcatgcctgaaatcccagcactttgggaggccaaggctgacggatcacctgaggtcaggagtccaagaccagcctgg-caacatggtgaaaccccatctctactaaaaatacaaaaaaaaattagctgggcatggtggtacg--tgcctataatcccagctgctcgggaggctgagacaggagaatcgcttgaacccaggaggcagaggtt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3425162 995 - 10304083 gagttcccaggcacgacgggatgggaggtcagacacgcttcac----acccctccctt-tggggtttagccaccactggccagcattcgtgtt-aaaagagagacagcgagaccacagaacagactgtggcaataagacg-caaatcacacacaggacctgaggttcagccaggctagagtgaagtctcacaccctacactgaaatcagaaa--------ccgtcctcgccgccacgagggttttcttctccagcagctaaaccagcgac-ggcctcgagatgagcaagacggaaacaatttgtagttcaccccccacccgatgctggctcactggccccgttccaccagccgtaactacagctttgatggaaaaagagactgatttcagtaacttcctcgggacaagaataagcccatggatgggctctggccggctgacagaggctgagcgctgggagccttcatgtccctgtttcaactttagaagcgcagagcctgcctgcgacgcatttagatgttaagtctcctctctaaggtgaacgtgagttgtatgttac-gtggatgtttgttcaatacacatgcgtcaggaccgcctttatgaatattcacagctcctcctgtaacctgttgaatatgtatgatcctccaacccgttcagcataaagctcctgccccaaccccttctcctacaaagtgcctgtctctggtctctgcgcgagactgtgcttcccagcccgcgggatgccaccttgcagactctaactctttacaagaaataatgtctttaggccgggcatggtggctcatgcctgaaatcccagcactttgggaggccaaggctgacggatcacctgaggtca-gagtccaagaccagcctgg-caacatggtgaaaccccatctctactaaaaatac-aaaaaaaattagctgggcatggtggtgcg--tgcctataatcccagctgctcgggaggctgagacaggagaatcgcttgaacccaggaggcagaggtt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3525990 996 - 107702431 gagttcccaggcacgatgggatgggacgtcagacacgcctcac----acccctcccttctggggtttagacaccaccggccagcattgatgtt-aaaagagagacggcgagaccacagaacagactgtggcaataagaca-caaatcacacacaggacccgaggctcagccaggctagagtgaagtctcacaccctacacttaaataagaaa--------ccgtcctcgccaccacaagggttttcttctccagcagctaaaccagcgac-ggcctcgagatgagcaagatggaaacaatttgtagttta-cccccacccgatgctggctaactggccccgttccaccagccgtaactacagctttgatggaaaaagagactgatttcagtaacttcctctggacaagaataagcccatggatgggctctggccggctgacagaggctgagcgctgggagccttcatgtccctgtttcaactttagaagcgcagagcctgcctgggacgcatttagatgttaagtctcctctctaaggtgaacgtgagctgtatgttac-gtggatgtttgttcaatacacatgcgtcaggaccacttttatgaatattcacagctcctcctgtaacctgttgaatatatatgatcctccaacccgttcagcataaagctcctgccccaaccccttctcctccaaggtgcctgtctctggtctctgcgcgagacggtgcttcccagcctgcgggatgccgccttccagactgtaactctttacaagaaataatgtctttaggccgggcatggtggctcatgcctgaaatcccagcactttgggaggccaaggctgacggatcacctgaggtcaagagtccaagaccagcctgg-caacatggtgaaaccccatctctactaaaaatac-aaaaaaaattagctgggcatggtggtacg--tgcctataatcccagctgctcgggaggctgagacaggagaattgcttgaacccaggaggcagaggtt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1057167 977 + 1565135 gagttcccaggcacgacgggatgggaggtcagacacgcttcac----acccctccctt-tggggtttagccaccactggccagcattcgtgtt-aaaagagagacagcgagaccacagaacagactgtggcagtaagacg-caaatcacacacaagacctgaggttcagccaggctagagtgaagtctcacaccctacactgaaataagaaa--------ccgtcctcgccgccacgagggttttcttctccagcagctaaaccagcgac-ggcctcgagatgagcaagatggaaacaatttgtagtttaccccccgcccgatgctggctaactggcccagttccaccagccgtaactacagctttgatggaaaaagagactgatttcagt------------------ataagcccatggatgggctctggccggctgacagaggctgagcgctgggagccttcatgtccctgtttcaactttagaagcgcagagcctgcctgcgacgcatttagatgtcaagtctcctctctaaggtgaacgtgagttgtatgttac-gtggatgtttgttcaatacacatgcgtcaggaccgcctttatgaatattcacagctcctcctgtaacctgttgaatatgtatgatcctccaacccgttcagcataaagctcctgccccaaccccttctcctacaaggtgcctgtctctggtctctgcgcgagactgtgcttcccagcctgcgggatgccaccttgcagactgtaactctttacaagaaatagtgtctttaggccgggcatggtggctcatgcctgaaatcccagcgctttgggaggccaaggctgacggatcacctgaggtc-agggtccaagaccagcctgg-caacatggtgaaaccccatctctactaaaaatac-caaaaaaattagctgggcatggtggtacg--tgcctataatcccagctgctcgggaggctgagacaggagaatcgcttgaacccaggaggcagaggtt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3419375 996 - 13651311 gagttcccaggcacgatgggatgggaggtcagacacgcttcac----acccctcccttttggggtttagacacaactggccagcattcatgttaaaaagagagacggcgagaccgcagaacagactgtggcaata--aca-caaatcacacacaggacccaaggctcagccaggctagagtgacgtctcataccctacacttcaataagaaa--------ctgtcctcaccaccacgaggcttttcttctccagcagctaaaccagcgat-ggccttgagatgagcaagatgaaaacaatttgtagtttacccaccacccgatgctggctaactggccccgttccaccagccgtaactacagctttgatggaaaaagagactgatttcagtaacttcctcaggacaagaataagcccatggatgggctctggccggctgacagaggctgagtgctgggagccttcatgtccctgtttcaactttagaagcgcagagcctgcctgtgacgcatttagacgttaagtctcctctctaaggtgaacatgagttgtatgttac-gtggatgtttgttcaatacacatgcgtcaggaccaccttgatgaatattcacagctcctcttgtaacctgttgaatatatatgatcctccaacccgttcagcataaggctcctgccccaaccccttcccctacaaggtgcctgtctctggtctctgcgcgagactgtgcttcccagcctgtaggaagccagcttgcagatggtaactctttacaagaaataatgtctTTAggctgggcatggtggctcatgcctgaaatcccagcacttcaggaggccaaggctgacggatcacctgaggtcaggagtccaagaccagcctgg-caacatggtgaaaccccatctctactaaaaatac-aaaaaaaattagctgggcatggtggtaca--tgcctataatcccagctactcgggaggctgagacaggagaattgcttgaacccaggaggcagaggtt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3505005 1000 - 108792865 gagttccctggctcgacgggcgggaaggtcagacatgcctccctgtacaccctcccttttggggttgagacacaacgggccagcattcatgtt-aaaactgagatcgcgagaccacagaacagactgtggcattaagacaccaaatcagacacaggacctaaggccctgccgggcgagggtggagtgtcccaacctgcgcttacgtaataaactgcccccccacccccaccgccacgagggattccttctccaccagctaaaccagcgct-ggccttgagatgagcaagatgaaaacaacgt---gctcatccaccacccgacgctggctaaccggccccgtgccgccagcc-taactacagctttgatggaacgagagactgatttcagtcacttcccggtgacaaaaacaagcccacacacgggctctggccgcttcacagaggctgtgcgccgggcgccctcctggccctgcttcacctttggaagcgcagggcctgcctggggggcacttag-tgctgagtctcctctccacggtgaacctg-gtcgtatgtcac-gtgcatgtttgttcaatacgcctgcttcagaaccac-ctcatgaatattcatagctcctcctgtaacctgttgaatacgtattttcatccgccgggttcagcatgaagctcctgccccagccccttctcctcc-aggtgcctgtcttgggtctccatg-gaggctgtgcttcccagcctgtgagataccactctgcagattgtaactctttacaagaaatt-tgtctttaggccaggcatggtggctcacgtctgtaatcccagcactttgggaggccgaggcagatgaatcacctgaggtcaggagttcaggaccagcctggccaacatggtgaaaccccatctctactaaaaatac--aaaaaaattagccgggtgtggtggcgcg--ccctttgtaatccagctactcaggaggccgaggcaggagaattgcttgaacccgggaggcagaggtt i calJac3.chr14 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e saiBol1.JH378218 3151511 1479 - 7082604 I e dasNov3.JH580157 676118 0 + 2232271 C e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 637985 1192 + 5243153 I e aotNan1.NW_018509326v1 3379308 2288 + 7587287 I a score=688560.000000 s hg38.chr2_KI270769v1_alt 105312 116 + 120616 gcagtgagccaagatcacacccctccactccagcctgggcgacgagaatgaaactccatctca-aaaaa------------------------aaagaaaagaaaaagaaagaatgtctcctcttctaaatgtatagattg s panTro5.chr2A 3567771 116 + 111504155 gcagtgagccaagatcacacccctccactccagcctgggcgacgagaatgaaactccatctca-aaaaa------------------------aaagaaaagaaaaagaaataatgtctcctcttctaaatgtatagattg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3428077 116 + 114371477 gcagtgagccaagatcacacccctccactccagcctgggcgacgagaatgaaactccatctca-aaaaa------------------------aaagaaaagaaaaagaaataatgtctcctcttctaaatgtatagattg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 306562 115 + 637652 gcagtgagccaagatcacacccctccactccagcctgggcgacaagaatgaaactctatctca-aaaaa------------------------aaaggaaag-aaaggaaagaatgtctccttttctaaatgtatagattg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3102050 110 + 81552678 gcggtgagccaagatcacgcccctgcactccagcctgggcgacaacagcgaaactccgtctca-aaca------------------------------aaagaaaaagaaagaatgtctccttttctaaaggtatagatcg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3366102 116 + 108979918 gcagtgagccgagatcacgcccctgcactccagcctgggtgacacgagcaaaactccatctcc-aaaaaat----------------------aaagaaaagaaaaagaaac--tgtctcgttttctaaatttatagatca i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5078244 116 - 111193037 gcagtgagccgagatcacgcccctgcactccagcctgggtgacacgagcaaaactccatctcc-aaaaaat----------------------aaagaaaagaaaaagaaac--tgtctcgttttctaaatttatagatca i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3469535 116 + 3644372 gcagtgagccgagatcacgcccctgcactccagcctgggtgacaagagcaaaactccatctcc-aaaaaat----------------------aaagaaaagaaaaagaaac--tgtctcgttttctaaatttatagatca i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3426157 116 - 10304083 gcagtgagccaagatcatgcccctgcatgccagcctgggtgacaagagcaaaactccatctcc-aaaaaaa----------------------aaagaaaagaaaaagaaac--tgtctcgttttctaaatttatagatca i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3526986 119 - 107702431 gcagtgagccaagatcatgcccctgtgctccagcctgggtgacaagagcaaaactccatctccaaaaaaaa----------------------aaagaaaagaaaaagaaacaatgtctcgttttctaaatttatagatca i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1058144 116 + 1565135 gcagtgagccaagatcacgcccctgcactccagcctgggtgacaagagcgaaactccatctcc-aaaaaaa----------------------aaagaaaagaaaaagaaac--tgtctcgttttctaaatttatagatca i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3420371 140 - 13651311 gcagtgagccaagatcacgcccctgcactccagcctgggtgacaagagcaaaactccatctcc-aaaaaaaaaaaaaagaaaaagaaagaaaGAAAGAAAAGAAAaagaaataatgtctccttttctaaatgtatagatcg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3506005 118 - 108792865 gcagtgagccgagatcatgcccctgtactccagcctgggcaacatgagtgaaactccatctca-aaaacag----------------------aaagaaaaaataaataaataacatctccttttctaaactcataaatcg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3152990 107 - 7082604 gcagtgagccgagatcatgcccctgaactcccgcctgggcaaca----tgaaactccatctca-aaaacag----------------------aaaaaaTATATCTGT-------ATTTCCTTTTCTAAATTGATAAATGG i saiBol1.JH378218 I 1479 C 0 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 676118 0 + 2232271 C e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 637985 1192 + 5243153 I e aotNan1.NW_018509326v1 3379308 2288 + 7587287 I a score=266979.000000 s hg38.chr2_KI270769v1_alt 105428 30 + 120616 tgtcatcttttagttaacaAGATGAAGAGA s panTro5.chr2A 3567887 30 + 111504155 tgtcatcttttagttaacaAGATGAAGAGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3428193 30 + 114371477 tgtcatcttttagttaacaAGATGAAGAGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 306677 30 + 637652 tgtcatcttttagttaacaAGATGAAGAGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3102160 30 + 81552678 tgtcatcttttagttaacaAGAGGAAGAGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3366218 30 + 108979918 tgtcatcttttagttaacaAGATGAAGAAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5078360 30 - 111193037 tgtcatcttttagttaacaAGATGAAGAAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3469651 29 + 3644372 tgtcatcttttagttaacaAGATGAA-AAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3426273 30 - 10304083 tgtcatcttttagttaacaAGATGAAGAAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3527105 30 - 107702431 tgtcatcttttagttaacaAGATGAAGAAA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1058260 30 + 1565135 tgtcatcttttagttaacaAGATGAAGAAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3420511 30 - 13651311 tgtcatcttttagttagcaAGATGAAGAAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3506123 30 - 108792865 tgtcatcttttacttaacaGGATGAAGAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3153097 30 - 7082604 CGTCATCTTTTAGTTAACAGGATGAAGAAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 639177 30 + 5243153 TGTCATCTTTTAGTTAACAGGATGAAGAAA i cebCap1.NW_016107454v1 I 1192 C 0 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 676118 0 + 2232271 C e otoGar3.GL873658 2583869 1291 + 5252280 I e aotNan1.NW_018509326v1 3379308 2288 + 7587287 I a score=92814.000000 s hg38.chr2_KI270769v1_alt 105458 11 + 120616 TGGATGGCAAG s panTro5.chr2A 3567917 11 + 111504155 TGGATGGCAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3428223 11 + 114371477 TGGATGGCAAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 306707 11 + 637652 TGGATGGCAAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3102190 11 + 81552678 TGGATGGCAAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3366248 11 + 108979918 TGGATGGCAAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5078390 11 - 111193037 TGGATGGCAAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3469680 11 + 3644372 TGGATGGCAAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3426303 11 - 10304083 TGGATGGCAAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3527135 11 - 107702431 TGGATGGCAAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1058290 11 + 1565135 TGGATGGCAAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3420541 11 - 13651311 TGGATGGCAAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3506153 11 - 108792865 TGGATGGTCAC i calJac3.chr14 C 0 I 1 s saiBol1.JH378218 3153127 11 - 7082604 CGGATGGTCAA i saiBol1.JH378218 C 0 I 1 s cebCap1.NW_016107454v1 639207 11 + 5243153 TGGATGGTCAA i cebCap1.NW_016107454v1 C 0 I 1 s dasNov3.JH580157 676118 11 + 2232271 TGCATAAGAGG i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e aotNan1.NW_018509326v1 3379308 2288 + 7587287 I a score=1744760.000000 s hg38.chr2_KI270769v1_alt 105469 204 + 120616 AAGAGAAATAAAA-ATCAGAAAGGAGATGATCCTATTCACTTTTCGGAAGTGAGGACA-AAACCAAATA---GGGAAATGAGC------------------------CGCCGCAGGAATG---------------------------------------------AAGAAGCCTGTAACAGC---TATTCCAAACCGG-G-AGAGCGT-CCTGGGGCCAGGACTTCATTGGGATAAGATGTTGAATCTGGAACAAGATAGAACAAGGCTGGACATTTCCTGGAT s panTro5.chr2A 3567928 204 + 111504155 AAGAGAAATAAAA-ATCAGAAAGGAGATGATCCTCTTCACTTTTCGGAAGTGAGGACA-AAACCAAATA---GGGAAATGAGC------------------------CGCCGCAGGAATG---------------------------------------------ACGAAGCCTGTAACAGC---TATTCCAAACCGG-G-AAAGCGT-CCTGGGGCCAGGACTTCATTGGGATAAGATGTTGAATCTGGAACAAGATAGAACAAGGCTGGACATTTCCTGGAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3428234 204 + 114371477 AAGAGAAATAAAA-ATCAGAAAGGAGATGATCCTCTTCACTTTTCGGAAGTGAGGACA-AAACCAAATA---GGGAAATGAGC------------------------CGCCGCAGGAATG---------------------------------------------ACGAAGCCTGTAACAGC---TATTCCAAACCGG-G-AAAGCGT-CCTGGGGCCAGGACTTCATTGGGATAAGATGTTGAATCTGGAACAAGATAGAACAAGGCTGGACATTTCCTGGAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 306718 204 + 637652 AAGAGAAATAAAA-ATCAGAAAGCAGATGATCCTATTCACTTTTCGGAAGTGAGGACA-AAACCAAATA---GGGAAATGAGC------------------------CGCCGCAGGAATG---------------------------------------------AAGAAGCCTGTAACAGC---TATTCCAAACCGG-G-AAAGCGT-CCTGGGGCCAGGACTTCATTGGGATAAGATGTTGAATCTGGAACAAGATAGAACAAGGCTGGACATTTCCTGGAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3102201 203 + 81552678 AAGAGAAATAAAA-CTCAGAAAGGAGATGATCCTAATCACTTTTCGGAAGTGAGGACA-AAACCAAATA---GGTAAATGAAG------------------------CACCACAGG-ACG---------------------------------------------AAGAGGCCTTTCACAGC---TATTCCAAACCGG-G-AAGGCGT-CCTGGGGCCAGGACTTCATTGGGATAAGATGTTGAATCTGGAACAAGATAGAACAAGGCTGGACATTTCCTGGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3366259 206 + 108979918 AAGAGAAATAAAACATCCGAAACAAGAGGATCCTCTTCACTTTTTGGAAGTGAGGACAGAAACCAAATA---GGGAAATGAAC------------------------CACCACAGGAATG---------------------------------------------ACGAGGCCTTTAACAGC---TACTCCAAGCCGG-G-CAAGTAT-CCTGGGGCTGGGTCTTCACTGGGATAAGATGTTGAATCGGGAGCAAGACAGAACAAGGCTGGACATTTCCTGGGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5078401 206 - 111193037 AAGAGAAATAAAACATCCGAAACAAGAGGATCCTCTTCACTTTTTGGAAGTGAGGACAGAAACCAAATA---GGGAAATGAAC------------------------CACCACAGGAATG---------------------------------------------ACGAGGCCTTTAACAGC---TGCTCCAAGCCGG-G-CAAGTAT-CCTGGGGCTGGGTCTTCACTGGGATAAGATGTTGAATCGGGAGCAAGACAGAACAAGGCTGGACATTTCCTGGGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3469691 206 + 3644372 AAGAGAAATAAAACATCCGAAACAAGAGGATCCTCTTCACTTTTTGGAAGTGAGGACAAAAACCAAATA---GGGAAATGAAC------------------------CACCACAGGAGTG---------------------------------------------ACGAGGCCTTTAACAGC---TGCTCCAAGCTGG-G-CAAGTAT-CCTGGGGCTGGGTCTTCACTGGGATAAGATGTTGAATCGGGAGCAAGACAGAACAAGGCTGGACATTTCCTGGAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3426314 206 - 10304083 AAGAAAAATAAAACATCAGAAACAAGATGATCCTATTCACTTTTTGGAAGTGAGGACAAAAACCAAATA---GGGAAATGAAT------------------------CACCACAGGAATG---------------------------------------------ACGAGGCCTTTAACAGC---TGCTCCAAGCCGG-G-CAAGTAT-CCTGGGGCTGGGTCTTCACTGGGATAAGATGTTGAATCGGGAGCAAGACAGAACAAGGCTGGACATTTCCTGGAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3527146 206 - 107702431 AAGAGAAATAAAACATCAGAAACAAGATGATCCTATTCACTTTTTGGAAGTGAGGACAAAAACCAAACA---GGGAAATGAAC------------------------CACCACAGGAATG---------------------------------------------ACGAAGCCTTTCACAGC---TACTCCAAGTCGG-G-AAAGTAT-CCTGGGGCTGGGTCTTCACTGGGATAAGATGTTGAATCTGGAGCAAGACAGAACAAGGCTGGACATTTCCTGGAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1058301 206 + 1565135 AAGAGAAATAAAACATCAGAAACAAGATGATCCTATTCACTTTTTGGAAGTGAGGACAAAAACCAAATA---GGGAAATGAAC------------------------CACCACAGGAATG---------------------------------------------ACGAAGCCTTTAACAGC---TGCTCCAAGCCGG-G-CAAGTAT-CCTGGGGCTGGGTCTTCACTGGGATAAGATGTTGAATCGGGAGCAAGACAGAACAAGGCTGGACATTTCCTGGAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3420552 206 - 13651311 AAGAGAAATAAAACGTCAGAAACAAGATGATCCTATGCACTTTTTGGAAGTGAGGACAAAAACCAAATA---GGGAAATGAAC------------------------CACCACAGGAACG---------------------------------------------AAGAAGCGTTTAACAGC---TACTCCAAACCGG-G-GAGGTAT-CCTGGGGCTAGGTCTTCACTGGGATAAGATGTTGAATCTGGAGCAAGCTAGAACAAGGCTGGACATTTCCTGGAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3506165 205 - 108792865 AAGAGAAATAAAAAATCATAAAGGAGATGA-CCTATTCACTCTTCCGGACCGAGGAGA-AAACCAAACA---GCGAACAGAAG------------------------CCCCTCAGGAATG---------------------------------------------AAGACGTCTGAAACAGC-CACATTCCAAACTGG---AAAGTAT-CCTGGGGCTAGGACGTCCCTGGGATAGCATGTTGAATCTGGAGCAAGACAGAACAAGGTTGGACGTTTCCTGGAT i calJac3.chr14 I 1 C 0 s saiBol1.JH378218 3153139 190 - 7082604 AAGAGAAATAAAAAATCATAAAGGAGATGA-CCTATTCACTCTTCGGGAGTGAG--------------------GAACCGAAA------------------------CCCCACAGGAGTG---------------------------------------------AAGA-GCCTTCAACAGC-TACATTCCAAACCGG-GAAAAGTAT-CCTGGGGCCAGGACCGCACTGGGATAAGATGTTGAATCTGGAGCAAGATGGAACAAGGTTGGACGTTTCCTGGAT i saiBol1.JH378218 I 1 C 0 s cebCap1.NW_016107454v1 639219 206 + 5243153 AAGAGAAATTAAAAATCATAAAGGAGATGA-CCTATTCACTCTTTCGGAGTGAGGAGA-AAACCAAACA---GCGAACCGAAA------------------------CCCCACAGGAATG---------------------------------------------AAGAAGCCTTAAACAGC-TACATTCCAAACCGG-GAAAAGTAT-CCCGGGGCTAGGACTTCACTGGGATAAGATGTTGAATCTGGAGCAAGATAGAACAAGGTT-GACGTTTCCTGGAT i cebCap1.NW_016107454v1 I 1 C 0 s aotNan1.NW_018509326v1 3381596 208 + 7587287 AAGAAAAA-AAAAAATCATAAAGGAGATGA-CCTATTCACTCTTCGGGAGTGAGGAGA-AAACCAAACA---GCGGACCGAAA------------------------CCCCACAGGAATG---------------------------------------------AAGAAGCCTTAAACAGAGCACATTCCAAACTGG-GAAAGTAATGCCTGGGGCTAGGACTTCATTGGGATAAGATGTTGAATCTGGAGCAAGACAGAACAAGGTTGGACATTTCCTGGAT i aotNan1.NW_018509326v1 I 2288 I 131 s dasNov3.JH580157 676129 273 + 2232271 AAGGGGAATAAAA-ATCAG--TGGAGATGATCCTTCTCAC--TTAGGAAATGTGGACA-AAACCAAGTAAGCgaggagtgaatgtagctcaagtggttgagcacctgcttcccaggtatgaggtccctggtacctcGGGGGGAAAAAAAAAAGTGAAACCTAGAAATGGAGTCTTAAAAAGC-TAGATTTCAAACAAGTG-AAAGTAT-CCT-AGGCTAAAATTTCATTGGAATAAAATGTTTAATCTGGA-TAAAATGGAACAAGGCTGAAAATTTCTTACAT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=804303.000000 s hg38.chr2_KI270769v1_alt 105673 127 + 120616 TATCCACGCCTACTCCTT----AGAAACAAGCGTGAAG-TCCCCACAATGCGAGCAGGCCTC--TCACCAGGTTGCCTGTGCTGTCTGCAGTGCGGTATCTACCTCGAGTAGGAAGACGGCA-GGAAAAATCAAA- s panTro5.chr2A 3568132 128 + 111504155 GATCCACGCCTACCCCTT----AGAAACAAGCATGAAG-TCCCCACAGTGCGAGCAGGCCTC--TCACCAGGTTGCCTGTGCTGTCTGCAGTGCGGTATCTACCTCGAGTAGGAAGACGGCAGGGAAAAATCAAA- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3428438 127 + 114371477 GATCCACGCCTACTCCTT----AGAAACAAGCATGAAG-TCCCCACAGTGCGAGCAGGCCTC--TCACCAGGTTGCCTGTGCTGTCTGCAGTGCGGTATCTACCTTGAGTAGGAAGACGGCA-GGGAAAATCAAA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 306922 128 + 637652 GATCCACGCCTACTCGTT----AGAAACAAGCGTGAAG-TCCCCACAATGCGAGCAGGCCTC--TCACCAGGTTGCCTGCGCTGTCTGCAGTGCGGTCTCTACCTCGAGTAGGAAGACGGCAGGGAAAAATCAAA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3102404 128 + 81552678 GATCCATGCCTACGCCTT----AGAAACAAGCGTGAAG-TCCCCACAATGCGAGCGGGCCTC--TCACCGGGTTGCCTGTGCTGTCTGCAGTGCGGTGTCTACCTCGAGTAGGAAGAGGGCAGGGAAAAATCAAA- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3366465 123 + 108979918 GATCCA--CCTACTCCTT----AGAAACAAGGGTGAAG-CCCCCC---GCTGGGCGGGCCTC--TCATCGGGTTGCCTGCGTTGTCTGCAGTGCAGTATCTACCTTAAGTAGGAGGACAGCAAGGAAAAATCGAA- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5078607 123 - 111193037 GATCCA--CCTACTCCTT----AGAAACAAGGGTGAAG-CCCCCC---CCTGGGCGGGCCTC--TCATCGGGTTGCCTGCGTTGTCTGCAGTGCAGTATCTACCTTAAGTAGGAGGACAGCAAGGAAAAATCGAA- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3469897 125 + 3644372 GATCCA--CCTACTCCTT----AGAAACAAGGGTGAAG-CCCCCC-AACCTGGGCGGGCCTC--TCATCGGGTTGCTTGCGTTGTCTGCAGTGCAGTATCTACCTTAAGTAGGAGGACAGCAAGGAAAAATCGAT- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3426520 126 - 10304083 GATCCA--CCTACTCCTT----AGAAACAAGGGCGAAG-TCCCCTCAACCTGGGCGGGCCTC--TCATCGGGTCGCCTGTGTTGTCTGCAGTGCAGTATCTACCTTACGTAGGAGGACAGCAAGGAAAAATCGAA- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3527352 125 - 107702431 GATCCA--CCTACTCCTT----AGAAACAAGGGCGAAG-CCCCCC-AACCTGGGCGGGCCTC--TCATGGGGTTGCCTGCGTCGTCTGCGGTGCAGTATCTACCTTAAGTAGGAGGACAGCAAGGAAAAATCGAA- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1058507 126 + 1565135 GATCCA--CCTACTCCTT----AGAAACAAGGGCGAAGTCCCCTC-AACCTGGGCGGGCCTC--TCATCGGGTTGCCTGTGTTGTCTGCAGTGCAGTATCTACCTTAAGTAGGAGGACAGCAAGGAAAAATCGAA- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3420758 125 - 13651311 GATCCA--CCTACTCCTT----AGCAACAAGGGCGAAG-TCCCCCCAACCTGGGCGGGCCTC--TCATC-GGTTGCCTGTGTTGTCTGCAGTGCAGTATCTACCTTAAGTAGGAGGACAGCAAGGAAAAATCGAA- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3506370 127 - 108792865 GATCCGCGCCTCCTCCTT----AGAAATGAGGGTGAGG-TGCCCACAAGGCTGGCA-GCCTC--TCATGGGGTGGCCTGCGTGGTCCACAGTGTGGCATCTACCCCGAGCAGGAAGACAGCAGGGATAAACGGAA- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3153329 115 - 7082604 GGTCCGCGCCTCCGCCTT----AGAAACGAGGGTGAGG-TGCCCACAAGCCTGGCA-GCCTC--TCATGGGGTGGCCTGCGTGGTCCGCAGCGTGACGTGCACCCCG-----------AGCAGGGATAAAC-GAA- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 639425 127 + 5243153 GATCTGCACCGCCTCCTT----AGAAATGAGGGTGAGG-TGCCCACAAGCCTGGCA-GCCTC--TCATGGGGTGGCCTGCGTGGTCTGCTGTGTGGCCTCTACCCCGAGCAGGAAGACAGCAGGAATAAACGGAA- i cebCap1.NW_016107454v1 C 0 C 0 s dasNov3.JH580157 676402 133 + 2232271 GAGCCAAGTCTTCCTCTCAGTGAGAAACAGTAATGGAG-GCCATG-ACACTAGGCTGGCCCCTTTCACTGACTGGTCTGTGCTCCTAAAGGTGTGG-GTTTCTCTTCTGCAGCAACCCATTTAGGAAAAAAAGGAA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e aotNan1.NW_018509326v1 3381804 131 + 7587287 I a score=432444.000000 s hg38.chr2_KI270769v1_alt 105800 40 + 120616 GTGTCTTGAAAATGCCAACACATTAACCAGCTTGAAGCCA- s panTro5.chr2A 3568260 40 + 111504155 GTGTCTTGAAAATGCCAACACATTAACCAGCTTGAAGCCA- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3428565 40 + 114371477 GTGTCTTGAAAATGCCAACACATTAACCAGCTTGAAGCCA- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 307050 40 + 637652 GTGTCTTGAAAATGCCAACACATTAACCAGCTGGAAGCCA- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3102532 40 + 81552678 GTGTCTTGAAAATGCCAACACATTAACCAGCTTGAAGCCA- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3366588 40 + 108979918 GTGTCTTGAAAATGCCAACACATTAACCAGCTTGAAGCCA- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5078730 40 - 111193037 GTGTCTTGAAAATGCCAACACATTAACCAGCTTGAAGCCA- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3470022 40 + 3644372 GTGTCTTGAAAATGCCAACACATTAACCAGCTTGAAGCCA- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3426646 40 - 10304083 GTGTCTTGAAAATGCCAACACATTAACCAGCTTGAAGCCA- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3527477 40 - 107702431 GTGTCTTGAAAATGCCGACACATTAACCAGCTTGAAGCCA- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1058633 40 + 1565135 GTGTCTTGAAAATGCCAACACATTAACCAGCTTGAAGCCA- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3420883 40 - 13651311 GTGTCTTGAAAATGCCAACACATTAACCAGCTTGAAGCCA- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3506497 40 - 108792865 GTGCCTTCAAAATGCCAACACATTACCCAGCTTGAAGCCA- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3153444 40 - 7082604 GTGCCTTGAAAATGCCAACACATTACCCAGCTTGAAGCCA- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 639552 38 + 5243153 GTGCCTTGAAAATGCCA--ACCTTACCCAGCTGGAAGCCA- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3381935 40 + 7587287 GTGCCTTGAAAATGCCAACACATTACCCAGTTTGAAGCCA- i aotNan1.NW_018509326v1 I 131 I 54 s dasNov3.JH580157 676535 41 + 2232271 ATTTTATTAAAATGCCAACACATAAACGAGTTTGAAACGTA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=260313.000000 s hg38.chr2_KI270769v1_alt 105840 33 + 120616 TACTCAAGTGCGATAATTCATATTCTGATTTAT s panTro5.chr2A 3568300 33 + 111504155 TACTCCAGTGCACTAATTCATATTCTGATTTAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3428605 33 + 114371477 TACTCAAGTGCACTAATTCATATTCTGATTTAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 307090 33 + 637652 TACTCAAGTGCAATAATTCATATTCTGATTTAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3102572 33 + 81552678 TACCCAACTGCAGTAATTCATATTCTGATTTAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3366628 31 + 108979918 TACCCAAGTGCAGTAATTCTTA--CTGATTTAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5078770 31 - 111193037 TACCCAAGTGCAGTAATTCATA--CTGATTTAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3470062 31 + 3644372 TACCCAAGTGCAGTAATTCATA--CTGATTTAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3426686 31 - 10304083 TACCCAAGTGCAGTAATTCATA--CTGATTTAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3527517 31 - 107702431 TACCCAAGTGCAGTAATTCATA--CCGATTTAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1058673 31 + 1565135 TACCCAAGTGCAGTAATTCATA--CTGATTTAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3420923 31 - 13651311 TACCCAAGTGCACTAATTCATA--CTGATTTAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3506537 33 - 108792865 CACTGAAGTGCAATAATCCATAATCTGATTTAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3153484 33 - 7082604 CACCGAAGTGCAGTAATTCATAATCTGATTTAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 639590 33 + 5243153 CACCGAAGTGCAAGAATTCATAATCTGATTTAT i cebCap1.NW_016107454v1 C 0 C 0 s dasNov3.JH580157 676576 31 + 2232271 TACCAAAATGCAGTCATTCATA--CTGATTCAT i dasNov3.JH580157 C 0 I 372 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e aotNan1.NW_018509326v1 3381975 54 + 7587287 I a score=84087.000000 s hg38.chr2_KI270769v1_alt 105873 9 + 120616 TAATATCCC s panTro5.chr2A 3568333 9 + 111504155 TAATATCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3428638 9 + 114371477 TAATATCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 307123 9 + 637652 TAATATCCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3102605 9 + 81552678 TAATATCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3366659 9 + 108979918 TAATATCCC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5078801 9 - 111193037 TAATATCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3470093 9 + 3644372 TAATATCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3426717 9 - 10304083 TAATATCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3527548 9 - 107702431 TAATATCCC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1058704 9 + 1565135 TAATATCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3420954 9 - 13651311 TAATATCCC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3506570 9 - 108792865 TAATATCCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3153517 9 - 7082604 TAATATCCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 639623 9 + 5243153 TAATATCCT i cebCap1.NW_016107454v1 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 676607 372 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I e aotNan1.NW_018509326v1 3381975 54 + 7587287 I a score=174622.000000 s hg38.chr2_KI270769v1_alt 105882 18 + 120616 AGTCATAAACCCCATGGC s panTro5.chr2A 3568342 18 + 111504155 AGTCATAAACCCCATGGC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3428647 18 + 114371477 AGTCATAAACCCCATGGC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 307132 18 + 637652 AGTCATAAACCCCATGGC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3102614 18 + 81552678 AGTCATAAACCCCATGGC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3366668 18 + 108979918 AGTCATAAACCCCATGGC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5078810 18 - 111193037 AGTCATAAACCCCATGGC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3470102 18 + 3644372 AGTCATAAACCCCATGGC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3426726 18 - 10304083 AGTCATAAACCCCATGGC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3527557 18 - 107702431 CGTCATAAACCCCATGGC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1058713 18 + 1565135 AGTCACAAACCCCATGGC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3420963 18 - 13651311 AGTCATAAACCCCATGGC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3506579 18 - 108792865 AGTCAGAAACACCATAGC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3153526 18 - 7082604 AGTCAGAAACGCCATAGC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 639632 18 + 5243153 AGTCAGAAACGCCATAGC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3382029 18 + 7587287 AGTCAGAAACACCATAGC i aotNan1.NW_018509326v1 I 54 C 0 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 676607 372 + 2232271 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=209554.000000 s hg38.chr2_KI270769v1_alt 105900 21 + 120616 AATAAATACATCTGTGCCTGT s panTro5.chr2A 3568360 21 + 111504155 AATAAATACATCTGTGCCTGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3428665 21 + 114371477 AATAAATACATCTGTGCCTGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 307150 21 + 637652 AATAAATACATCTGTGCCTGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3102632 21 + 81552678 AATAAATACACCTGTGCCTGT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3366686 21 + 108979918 AATACATACATCTGTGCCTGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5078828 21 - 111193037 AATACATACATCTGTGCCTGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3470120 21 + 3644372 AATACATACATCTGTGCCTGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3426744 21 - 10304083 AATACATACATCTGTGCCTGT i cerAty1.NW_012000820v1 C 0 I 316 s chlSab2.chr14 3527575 21 - 107702431 AATACATACAACTGTGCCTAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1058731 21 + 1565135 AATACATACATCTGTGCCTGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3420981 21 - 13651311 AATACGTACATCTGTGCCTGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3506597 21 - 108792865 AATGAGTACATCTGTGCCTAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3153544 21 - 7082604 AATAAATACATCTGTGCCTGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 639650 21 + 5243153 AATAAATACATCTGTGCCTGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3382047 21 + 7587287 AATAAATACATCTGTGCCTGT i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 676979 17 + 2232271 aataaataaatcttaaa---- i dasNov3.JH580157 I 372 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=283913.000000 s hg38.chr2_KI270769v1_alt 105921 29 + 120616 AAAAAGAGGGCACACTTGAAAAATAACA-C s panTro5.chr2A 3568381 29 + 111504155 AAAAAGAGGGCACATTTGAAAAATAACA-C i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3428686 29 + 114371477 AAAAAGAGGGCACATTTGAAAAATAACA-C i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 307171 29 + 637652 AAAAAGAGGGCACATTTGAAAAATAACA-C i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3102653 29 + 81552678 AAAAAGAGGGCACACTTGAAAAATAACA-C i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3366707 30 + 108979918 AAAAAGAGGGCACATTTGAAAAATAACGTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5078849 29 - 111193037 AAAAAGAGGGCACATTTGAAAAATAACG-T i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3470141 29 + 3644372 AGAAAGAGGGCACATTTGAAAAATAACG-T i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3427081 29 - 10304083 aaaaaGAGGGCACATTTGAAAAATAACC-C i cerAty1.NW_012000820v1 I 316 C 0 s chlSab2.chr14 3527596 29 - 107702431 AAAAAGAGGGCACATTTGAAAAATAACA-T i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1058752 29 + 1565135 AAAAAGAGGGCACATTTGAAAAATAACA-C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3421002 29 - 13651311 AAAAAGAGGGCACATTTGAAAAATAACG-C i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3506618 20 - 108792865 AAAAAGAGGG---------AAAATCACG-C i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3153565 29 - 7082604 AAAAAGAGGGCACACTGGAAAAATCACA-C i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 639671 29 + 5243153 AAAAAGAGAGCACACTGGAAAAATCACA-C i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3382068 29 + 7587287 AAAAAGAGGGCACACTGGAAAAATCACA-C i aotNan1.NW_018509326v1 C 0 I 399 s dasNov3.JH580157 676996 29 + 2232271 aaaaaaaGGACACAGTTGAAAAATAATA-C i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=2442875.000000 s hg38.chr2_KI270769v1_alt 105950 322 + 120616 ----ATGTCCAGGAATATCTTACTCAGCAAGCAGGCAGAGCCTGCTCTAAATTG---------ACGAACTTGGACACAGTGAAAACCAACAGCTGTCCCGCTTGGGAAACTAACAGTTGGGCTCCTTGG-AAAAAATACCTGATTTAGAAT-CTAACGAATGTGTTT----ATAAAGGACCCA----------tc---ttc----------------------------------------------------------------ttttttttgttttttgagacaga-gtctcgctctgctgcccaggctggactgcaatggcaagatctcagctcactgcaacctccgcctcctgggttcaagcaattctcccacctcagcctcctgagtagctgggattacaggcacccgccatca s panTro5.chr2A 3568410 322 + 111504155 ----ATGTCCAGGAATATCTTACTCAGCAAGCAGGCAGAGCCTGCTCTAAATTG---------ACGAACTTGGACACAGTGAAAACCAATAGCTGTCCCGCCTGGGAAACTAACAGTTGGGCTCCTTGGAAAAAAATACCTGATTTAGAAT-CTAACGAATGTGTTT----ATAAAGGACCCA----------TC---ttc-----------------------------------------------------------------tttttttgttttttgagacaga-gtctcgctctgttgcccaggctggactgcaatggcaagatctcagctcactgcaacctccgcctcctgggttcaagcaattctcccacctcagcttcctgagtagctgggattacaggcacccgccatca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3428715 321 + 114371477 ----ATGTCCAGGAATATCTTACTCAGCAAGCAGGCAGAGCCTGCTCTAAATTG---------ACGAACTTGGACACAGTGAAAACCAATAGCTGTCCCGCCTGGGAAACTAACAGTTGGGCTCCTTGG-AAAAAATACCTGATTTAGAAT-CTAACGAATGTGTTT----ATAAAGGACCCA----------tc---ttc-----------------------------------------------------------------tttttttgttttttgagacaga-gtctcgctctgttgcccaggctggactgcaatggcaagatctcagctcactgcaacctccgcctcctgggttcaagcaattctcccacctcagcttcctgagtagctgggattacaggcacccgccatca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 307200 320 + 637652 ----ATGTCCAGGAATATCTTACTCAGCAAGCAGGCAGAGCCTGCTCTAAATTG---------ACAAACTTGGACACAGTGAAAACCAACAGCTGTCCCGCTTGGGAAACTAACAGTTGGGCTCCTTGG-AAAAAATACCTGATTTACAAT-CTAACGAATGTGTTT----ATAAAGGACCCA----------tc---ttc-----------------------------------------------------------------tttttttgttttttgagacaga-gtctcgctctgttgcccaggctggattgcaatggcaagatctcagctcactgcaacctccgcctcctgggttc-agcggttctcccacctcagcctcctgagtagctgggattacaggcacccgccatca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3102682 334 + 81552678 ----ATGTCCGGGAATATCTTACTCAGCAAGAAGGCAGAGCCTGCTCCAACCTC---------ACGAACTTGGACACAGTGAAAACCAACAGCTGTCCTGCTTGGGAAACTAACAGCTGGGCTCCTTGG-AAAAAATACCTGATTTAGAAT-CTAACGAATGTGTTT----ATGAAGGATCCA----------TC---TTC----------------------------------------------------tttttttttttttttttttttttttttgagacaga-gtctcactctgttgcccaggctggactgcaatggcaggatctcagctcactgcaacctccgcctcctgggttcaagcaattctcccacctcagcctcctgagtagctgggattataggcacccgccatca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3366737 323 + 108979918 ----AAGTCCAGGAATCTCTTACTCAGCAAGCAGGCAGAGCCCGCTCTAAAGTG---------ACGAACTTGGACGCAGTGAAAACCAACAGCTGTCCCGCTTGGGAAACTAACAGTTGGGCTCCTTGG-AAAAAACACCTGATTTAGAAT-CTAATGAATGTGTTT----ATAAAGGATCTA----------tc---ttc---------------------------------------------------------------ttttttttttttttatgagacaga-gtctcactctgtctcccaggctggagtgcagtggcaggatcttggctcactgcaacctccgccttctgagttcaagcaattctcccgcctcagcctccctagtaggtgggattacaggcactcgccacca i rheMac8.chr13 C 0 I 47 s macFas5.chr13 5078878 323 - 111193037 ----ATGTCCAGGAATCTCTTACTCAGCAAGCAGGCAGAGCCCGCTCTAAAGTG---------ACGAACTTGGACGCAGTGAAAACCAACAGCTGTCCCGCTTGGGAAACTAACAGTTGGGCTCCTTGG-AAAAAACACCTGATTTAGAAT-CTAATGAATGTGTTT----ATAAAGGATCTA----------tc---ttc---------------------------------------------------------------ttttttttttttttatgagacaga-gtctcactctgtctcccaggctggagtgcagtggcaggatcttggctcactgcaacctccgccttctgagttcaagcaattctcccgcctcagcctccctagtagctgggattacaggcactcgccacca i macFas5.chr13 C 0 I 47 s macNem1.NW_012011978v1 3470170 323 + 3644372 ----ATGTCCAGGAATCTCTTACTCAGCAAGCAGGCAGAGCCCGCTCTAAAGTG---------ACGAACTTGGACGCAGTGAAAACCAACAGCTGTCCCGCTTGGGAAACTAACAGTTGGGCTCCTTGG-AAAAAACACCTGATTTAGAAT-CTAATGAATGTGTTT----ATAAAGGATCTA----------TC---ttc---------------------------------------------------------------ttttttttttttttatgagacaga-gtctcactctgtctcccaggctggagtgcagtggcaggatcttggctcaccgcaacctccgccttctgagttcaagcaattctcccgcctcagcctccctagtagctgggattacaggcactcgccacca i macNem1.NW_012011978v1 C 0 I 47 s cerAty1.NW_012000820v1 3427110 328 - 10304083 ----ATGTCCAGGAATCTCTTACTCAGCAAGCAGGCAGAGCTCGCTCTAAAGTG---------ACGAACTTGGACGCAGTGAAAACCAACAGCTGTCCCGGTTGGGAAACTAACAGTTGGGCTCCTTGG-AAAAAACACCTGATTTAGAAT-CTAATGAATGTGTTT----ATAAAGGATCTA----------TC---ttc----------------------------------------------------------tttttttttttttttttttatgagacaga-gtctcactctgtcgcccaggctggagtgcagtggcaggatcttggctcactgcaacctccgccttctgagttcaagcgattctcccgcctcagcctccctagtagctgggattacaggcactcgccacca i cerAty1.NW_012000820v1 C 0 I 47 s chlSab2.chr14 3527625 330 - 107702431 ----ATGTCCAGGAGTCTCTTACTCAGCAAGCAGGCAGAGCCCGCTCTAAAGTG---------ACGAACTTGGACACAGTGAAAACCAACAGCTGTCCCGGTTGGGAAACTAACAGTTGGGATCCTTGG-AAAAAACACCTGATTTAGAAT-CTAATGAATGTGTTT----ATAAAGGATCTA----------tctttttt-----------------------------------------------------------ttttttttttttttttttttgagatgga-gtctcactctgtcgcccaggctggagtgcagtggccggatctcagctcactgcaagctccgccttctgagttcaagcaattctcccgcctcagcctccctagtagctgggattacaggcactcgccacca i chlSab2.chr14 C 0 I 47 s manLeu1.NW_012104432v1 1058781 327 + 1565135 ----ATGTCCAGGAATCTCTTACTCAGCAAGCAGGCAGAGCCCGCTCTAAAGTG---------ACGAACTTGGACGCAGTGAAAACCAACAGCTGTCCCGGTTGGGAAACTAACAGTTGGGCTCCTTGG-AAAAAACACCTGATTTAGAAT-CTAATGAATGTGTTT----ATAAAGGATCTA----------TC---ttc-----------------------------------------------------------ttttttttttttttttttatgagacaga-gtctcactctgtcgcccaggctggagtgcagtggcaggatcttggctcactgcaacctccgccttctgagttcaagcgattctcctgcctcagcctccctagtagctgggattacaggcactcgccacca i manLeu1.NW_012104432v1 C 0 I 47 s colAng1.NW_012118821v1 3421031 386 - 13651311 ----ATGTCCAGGAACCTCTTACTCAGCAAGCAGGCAGAGCCCGCTCTAAACTG---------ACGAACTTGGACACAGTGAAGACCAACAGCTGTCCCGCTTGGGAAGCTAACAGTTGGGCTCCTTGG-AAAAAACACCTGATTTAGAAT-CTAATGAATGTGTTT----ATAAAGGATCTC----------TC---TTTTTTTTTTAGACAGAGTCTCGATTACATCCTAGGCCTGAAGATCGAGGATttctttttttttttttttttttttttttatgagacaga-gtctcactctgtcacccaggctggagtgccgtggcaggatcttggctcactgcaacctccgccttctgagttcaagcaattctcccacctcagcctccatagtagctgggattccaggcacctgccacca i colAng1.NW_012118821v1 C 0 I 47 s calJac3.chr14 3506638 333 - 108792865 ----GTGTCCAGGTGTATCTCACTCAGCCA-CAGGCAGAGCCCTTTTTAAATGG---------ACAAACCCTGACACAGTGAAAACCAACAGCCGCCCCACCTGGGAAACTAACAGCTGGGCTTCTTGG--AAAAATGCCTGATTTAGAGTCCTGACGAAGGTGTATTCACACAAAGTATCCGTGGttttttttt---ttt------------------------------------------------------------------tttttttctttttgagatggg-gtcttgctccgtcacccaggctggagtgctatggcacaatctcagctcactgcaacctccgcctcccaggttcaagcaattctccggcctcagccacccaagtagctgggattacaggcacccaccatca i calJac3.chr14 C 0 I 48 s saiBol1.JH378218 3153594 290 - 7082604 ----GTGTCCAGGTGTATCTCACTCAGCCA-CAGGCAGAGCCCTTTCTAAATGG---------ACAAACCC---------------------------------GGACACCAACAGCTGGGCTTCCTGG--GAAAATGCGTGATTGAGAATCCTGACGAGGGTGTGTTCACATAAAGGATCCA----------tt---ttt------------------------------------------------------------------tttttttttttttgagatgggagtctcgctctgccgcccaggctggagtgcaatggcgcaatctcagttcactgcaacct-cgcctcccaggttcaagcaattctcccgcttcagcctcccaagtagctgggattacaggtgcccgccgtca i saiBol1.JH378218 C 0 I 48 s cebCap1.NW_016107454v1 639700 321 + 5243153 ----GTGTCCAGGTGTATCTCACTCAGCCA-CAGGCAGAGCCCTTTCTAAATGG---------ACAAACCCAGACACGGTGAAAACCAACAGCCGCCCCACCTGGGAAACTAACAGCTGGGCTTCCTGG--AAAAATGCCTGATTTAGAATCCTGACGAAGGTGTGTTCACACAAAGGATCCA---------------tct------------------------------------------------------------------tctttttttttttgagatggg-gtctcgctctgtcgtccaggctggagtgcaatggtgcgatctcagctcactgcaacctccgcctcacaggttcaagcaattctcctgccccagcctcccaagtagctgggactacaagtgcctgccatca i cebCap1.NW_016107454v1 C 0 I 48 s dasNov3.JH580157 677025 182 + 2232271 AAATGTGTTTAAATATATCTTACTTAATAGACA---------TGCTCTAAATTGACAATTTACACAAATTTGGAGAAAGTGAAAACTGGCAGCTGTTCTACTTGGAAGACCAACACTTGTGTTCTTTGG-GAAAATTACATGACTTAGAATATTAATGAATTTGTTT----GTAAATGATCCA----------TC---TTC----------------------------------------------------------------------------TTTAATAT-------------------------------------------------------------------------------------------------------------------------------------- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e aotNan1.NW_018509326v1 3382097 399 + 7587287 I a score=1148867.000000 s hg38.chr2_KI270769v1_alt 106272 139 + 120616 tggccaggctggtcttgaacctctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattataggcgtgagccaccgcgcccagccAAGGATCCGTCTTCTCTAACATTCGGCTTGAAGAGAGA--CCCCC s panTro5.chr2A 3568732 141 + 111504155 tggccaggctggtcttgaacttctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattataggcgtgagccaccgcgcccagccAAGGATCTGTCTTCTCTAACATTCGGCTTGAAGAGAGACCCCCCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3429036 139 + 114371477 tggccaggctggtcttgaacttctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattataggcgtgagccaccgcgcccagccAAGGATCTGTCTTCTCTAACATTCGGCTTGAAGAGAGA--CCCCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 307520 140 + 637652 tggccaggctggtcttgaacttctgacctcaggtgatccg-ccacctcggcctcccaaagtgctgggattataggcgtgagccaccgcactcagccAAGGATCCGTCTTCTCTAACATTCGGCTTGAAGAGAGACCCCCCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3103016 137 + 81552678 tggccaggctggtcttgaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattataggcatgagccaccgcgcccagccAAGGATCCGTCTTCTCTAACATTCAGCTTGAAGAGAGA----CCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3367107 136 + 108979918 tggccaggctgatcttgaactcctgacctcagatgatccacccacctcggcctcccaaagtgttggg-ttacaggcgtgagccactgtgcccagccGAGGATCCGTCTTCTCTAACATTCGGCTTACAGAGAGA----CCC i rheMac8.chr13 I 47 C 0 s macFas5.chr13 5079248 127 - 111193037 tggccaggctga--------tcctgacctcaggtgatccacccacctcggcctcccaaagtgttgggattacaggcgcgagccactgtgcccagccGAGGATCTGTCTTCTCTAACATTCGGCTTAC--AGAGA----CCT i macFas5.chr13 I 47 C 0 s macNem1.NW_012011978v1 3470540 135 + 3644372 tggccaggctgatcttgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgttgggattacaggcgtgagccactgtgcccagccGAGGATCTGTCTTCTCTAACATTCGGCTTAC--AGAGA----CCT i macNem1.NW_012011978v1 I 47 C 0 s cerAty1.NW_012000820v1 3427485 135 - 10304083 tggccaggctgatcttgaactcctgacctcaggtgatccacccacctcggcctcccgaagtgctgggattacaggcgtgaaccaccatgcccagACAAGGATCCGTCTTCTCTAACACTCGGCTTAC--AGAGA----TCC i cerAty1.NW_012000820v1 I 47 C 0 s chlSab2.chr14 3528002 132 - 107702431 tggccag-----tcttgaactcctgacctcaggtgatccacccacctcagcctcccaaagtgttgggattacaggcatgaaccaccgtgcccagccAAGGATCCGTCTTCTCTAACATTCGGCTTACAGAGAGA----CCC i chlSab2.chr14 I 47 C 0 s manLeu1.NW_012104432v1 1059155 116 + 1565135 tggccaggctgatcttgaactcctgacctcaggtgatccacccacctcggcctcccgaagtgctgggattacaggcgtgaaccaccgtgcccagccAAGGATCCGTCTTCTCTAAC------------------------- i manLeu1.NW_012104432v1 I 47 C 0 s colAng1.NW_012118821v1 3421464 136 - 13651311 tggccaggctgatcttgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgaaccaccgtgcccagccAAGGATCCGTCTTCTCTAACATTCGGCTTAC--AGAGA---CCCC i colAng1.NW_012118821v1 I 47 C 0 s calJac3.chr14 3507019 137 - 108792865 tggccaggctgctattgaactcctgaactcaggtgatgtacctgcctcagcctcccaaagtgctgggattacaggggtgagccaccacgcccagccAAGGATCCATCTTCTCTAACATTCCGCTTGAAGAGAGA----CCC i calJac3.chr14 I 48 C 0 s saiBol1.JH378218 3153932 133 - 7082604 tggccaggctgctattgaa---ctgagctcaggtgatccacctgcctcagcctcccaaagtgctgggactacagggctgagccaccgcg-ccAGCCAAGGCTCCGTCTTCTCCAACATTCGGCTTGAAGGGAGA----CCC i saiBol1.JH378218 I 48 C 0 s cebCap1.NW_016107454v1 640069 137 + 5243153 tggctaggctggtattgaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctggaattacaggggtgggccaccaggcccagccAAGGATCCATCTTCTCTAACGTTCGGCTTGAAGAGAGA----CCC i cebCap1.NW_016107454v1 I 48 I 11 s aotNan1.NW_018509326v1 3382496 139 + 7587287 tggccaggctggtattgaactcctgacttcaggtgatccacctgcctcagcctcccaaagtgccgggattacaggggtgagctaccacgcccagccAAGGATCCATCTTCTCTAACATTCGGCTTGAAGAGAGA--TGCCC i aotNan1.NW_018509326v1 I 399 C 0 s dasNov3.JH580157 677207 62 + 2232271 ---------TGACCTTGAACTAAAGACCTCAACT-----------------CTTTAAAAGTGATATCTTTTTCAGAAAGAATAACCCT----------------------------------------------------- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=65621.000000 s hg38.chr2_KI270769v1_alt 106411 29 + 120616 CCACTACTTTACAGTGATGCCTTCGGGAA s panTro5.chr2A 3568873 29 + 111504155 CCACTACTTTACAGTGATGCCTTCAGGAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3429175 29 + 114371477 CCACTACTTTACAGTGATGCCTTCAGGAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 307660 29 + 637652 CCACTACTTTACGGTGATGCCTTCAGGAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3103153 29 + 81552678 TCACTACTTTACAGTGATGCCTTCAGGAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3367243 19 + 108979918 CCACTACTTT----------CTTCAGGAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5079375 19 - 111193037 CCACTACTTT----------CTTCAGGAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3470675 19 + 3644372 CCACTACTTT----------CTTCAGGAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3427620 19 - 10304083 CCACTACTTT----------CTTCAGGAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3528134 19 - 107702431 CCACTACTTT----------CTTCAGGAA i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3421600 29 - 13651311 CCACTACTTTAAAGAGATGCCTTCAGGAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3507156 11 - 108792865 CCACTGTTTTA------------------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3154065 11 - 7082604 CCACTGTTCTA------------------ i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3382635 9 + 7587287 --ACTGTTTTA------------------ i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 677269 8 + 2232271 TTATTACC--------------------- i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I e cebCap1.NW_016107454v1 640206 11 + 5243153 I e manLeu1.NW_012104432v1 1059271 0 + 1565135 C a score=3505898.000000 s hg38.chr2_KI270769v1_alt 106440 380 + 120616 GAACAGCCTTTTACCTCCCTAGGTTTTCTCCCCGCCTAGAGTTCTGTTTC-TTACTACATTACATTTCCGCTCGCTTA---GTGTTTTTCAACCC-TCGAGCTCTCCTCAAACCGTTCCATTGTTTAAGATACTAAC---AAGGGGCTGCCCTGACCCAGGAGACAGTGTAAGTGTA-GGGATCAGGGAACAGAAGCAGGAACGCaagacgccggatacaaacgtgaacatgctgcaggattccacgtgcatcaaattctagaaaagccaaaacccacccacataggttgctt--------aggatggggtggg-gggactaagaaggggcatgagaaccttctttgggtgatgaaaatgtcctatgttgttctgcctgaggtcatgctgc------------atttgtc s panTro5.chr2A 3568902 380 + 111504155 GAACAGCCTTTTACCTCCCTAGGTTTTCTCCCCACCTAGAGTTCTGTTTC-TTACTACATTACATTTCCGCTCGCTTA---GTGTTTTTCAACCC-TCGAGCTCTCCTCAAACCGTTCCAGTGCTTAAGATACTAAC---AAGGGGCTGCCCTGACCCAGGAGACAGTGTAAGTGTA-GGGATCAGGGAACAGAAGCAGGAACGCaagacgccggatacaaacgtgaacatgctgcaggattccacgcgcatcaaattctagaaaagccaaaacccacccacataggttgctt--------aggatggtgtggg-gggacttagaaggggcatgagaaccttctttgggtgatgaaaatgtcctgtgttgttctgcctgaggtcatgctgc------------atttgtc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3429204 380 + 114371477 GAACAGCCTTTTACCTCCCTAGGTTTTCTCCCCACCTAGAGTTCTGTTTC-TTACTACATTACATTTCCGCTCGCTTA---GTGTTTTTCAACCC-TCGAGCTCTCCTCAAACCGTTCCAGTGTTTAAGATACTAAC---AAGGGGCTGCCCTGACCCAGGAGACAGTGTAAGTGTA-GGGATCAGGGAACAGAAGCAGGAACGCaagacgccggatacaaacgtgaacatgctgcaggattccacgcgcatcaaattctagaaaagccaaaacccacccacataggttgctt--------aggatggggtggg-gggacttagaaggggcatgagaaccttctttgggtgatgaaaatgtcctgtgttgttctgcctgaggtcatgctgc------------atttgtc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 307689 377 + 637652 GAACAGCCTTTTACCTCCCTAAGTTTTCTCCCCGCCTAGAGTTCTGTTTC-TTACTACATTACATTTCCACTCGCTTA---GTGTTTTTCAACCC-TCAAGCTCTCCTCAAACCGTTCCACTGTTTAAGATACTAAC---AAGGGGCTGCCCTGACCCAGGAGACAGTGTAAGTGTA-GGGATCAGGGAACAGAAGCAGGAACGCaagacgccggacacaaacgtgaacatgctgcaggattccacgcgcatcaaattctagaaaagccaaagcCCACCCACACAGGTTGCTT--------Aggatggggt----gggactaagaagggacatgagaaccttctttgggtgatgaaaatgtcctgtgttgttctgcctgaggtcatgctgc------------attggtc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3103182 379 + 81552678 GAACAGCCTTTTACCTCCCTAGGTTTTCTCCCCGCCTAGAGTTCTGTTTC-TTACTACAGTACATTTCCACTCGTTTA---GTGTTTTTCAAGCC-TCGAGCTCTCCTCAAACCGTCCCAGTGTTTAAGATACTAAC---AAGGGGCTGCCCTGACCCAGGAGACAGTGTTAGTGTA-GGGATCAGAGAACAGAAGCAGGAACGCaagacgccagatacaaacatgaacatgctgcagggttccatgcgcatcaaattctagaaaagccaaaacccacccacacgggttgctt--------aggatggggt-gg-gggactaagaaggggcatgagaaccttctttgggtgatgaaaatgtcctgtgttgttctgcctgaggtcatgctgc------------ctttgtc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3367262 381 + 108979918 GAACAGCCTTTTACCTCCCTAGGTCTTCTCCCCGCCTAGAGTGCTGTTTC-TTACTACAGTCCATTTCCGTTCGCTTC---GTGTTTTTCAACCC-TCCGGCTCTCCTCAAACCATTCCAGTGTTTAAGATACTAAC---AAGCGGCTGCCCTGACCCAGGAGACAGTGTAAGTGTA-GGGATCAGGGAACAGAAGCGGgagcgcaagacgccagacacaaacgtgaacatgctgcaggattctatatgcatcaaattctagaaaagccaaaacccacccacacgggtggctt--------aggatggggtgggcgggactaagaaggggcaggagaaccttttttgggggatgaaaatgtcctgtgttgttctgcctgtggtcatgttgc------------atttgta i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5079394 381 - 111193037 GAACAGCCTTTTACCTCCCTAGGTCTTCTCCCCGCCTAGAGTGCTGTTTC-TTACTACAGTCCATTTCCGTTCGCTTC---GTGTTTTTCAACCC-TCCAGCTCTCCTCAAACCATTCCAGTGTTTAAGATACTAAC---AAGCGGCTGCCCTGACCCAGGAGACAGTGTAAGTGTA-GGGATCAGGGAACAGAAGCGGgagcgcaagacgccagacacaaacgtgaacatgctgcaggattctatatgcatcaaattctagaaaagccaaaacccacccacacgggtggctt--------aggatggggtgggcgggactaagaaggggcaggagaaccttttttgggggatgaaaatgtcctgtgttgttctgcctgtggtcatgttgc------------atttgta i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3470694 381 + 3644372 GAACAGCCTTTTACCTCCCTAGGTCTTCTCCCCGCCTAGAGTGCTGTTTC-TTACTACAGTCCATTTCCGTTCGCTTC---GTGTTTTTCAACCC-TCCAGCTCTCCTCAAACCATTCCAGTGTTTAAGATACTAAC---AAGCGGCTGCCCTGACCCAGGAGACAATGTAAGTGTA-GGGATCAGGGAACAGAAGCGGGagcgcaagacgccagacacaaacgtgaacatgctgcaggattctatatgcatcaaattctagaaaagccaaaacccacccacacgggtggctt--------aggatggggtgggtgggactaagaaggggcaggagaaccttttttgggggatgaaaatgtcctgtgttgttctgcctgtggtcatgttgc------------atttgta i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3427639 380 - 10304083 GAACAGCCTTTTACCTCCCTAGGTCTTCTCCCCGCCTAGAGTGCTGTTTC-TTACTACAGTCCATTTCCGTTTGCTTC---ATGTTTTTCAACCC-TCCAGCTCTCCTCAGACCATTCCAGTGTTTAAGATACTAAC---AAGCGGCTGCCCTGACCCAGGAGACAGTGTAAGTGTA-GGGATCAGGGAACAGAAGCGGGAGCACaggacgccagacacaaacgtgaacatgct-caggattctatacgcatcaaattctagaaaaggcaaaacccacccacacgggttgctt--------aggatggagtgggcgggactaagaaggggcaggagaaccttttttgggggatgaaaatgtcctgtgttgttctgcctgtggtcatgttgc------------atttgtc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3528153 380 - 107702431 GAACAGCCTTTGACCTCCCTAGGTTTTCTCCCTGCCTAGAGTGCTGTTTC-TTACTACAGTCCATTTCCGTTTGCTTA---GTGTTTTTCAACCC-TCGAGCTCTCCTCAAACCATTCCAGTGTTTAAGATACTAAC---AAGCGGCTGCCCTGACCCAGGAGACAGTGTAAGTGTA-GGGATCAGGGAACAGAAGCAGgagcgcaagacgccagacacaaacgtgaacatgct-caggattctatatgcatcaaattctagaaaagccaaaacccacccacacgggttgctt--------aggatggggtgggcgggactaagaaggggcaggagaacattttttgagtgatgaaaatgtcctgggttgttctgcctgtggttatgttgc------------atttgtc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1059271 379 + 1565135 --ACAGCCTTTTACCTCCCTAGGTTTTCTCCCCGCCTAGAGTGCTGTTTC-TTACTACAGTCCATTTCCGTTTGCTTC---GTGTTTTTCAACCCTTCTAGCTCTCCTCAGACCACTCCAGTGTTTAAGATACTAAC---AAGCGGCTGCCCTGACCCAGGAGACAGTGTAAGTGTA-GGGATCAGGGAACAGAAGCGGgagcgcaagacgccagacacaaacgtgaacatgct-caggattctatacgcatcaaattctagaaaagccaaaacccacccacacgggttgctt--------aggatggagtgggcgggactaagaaggggcaggagaaccttttttgggggatgaaaatgtcctgtgttgttctgcctgtggtcatgttgc------------atttgtc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3421629 380 - 13651311 GAACAGCCTTTCACCTCCCTCGGTTTTCTCCCCGCCTAGAGTGCTGTTTC-TGACTACAGTCCATTTCCGTTTACTTA---GTGTTTTCCAACCC-TCAAGCTCTCCTCAGACCATTCCAGTGTTTAAGATACTAAC---AAGCGGCTGCCCTGACCCAGGAGACAGTGTAAGTGTA-GGGATCAGGGAACAGAAGCAGGAACGCaagacgccagacacaaacgtgaacatgctgcaggattctatacgcacc-aattctagaaaagccaaaacccacccacacgggttgctt--------aggatggggtgggtgggactaagaaggggcatgagaaccttttttgggtgatgaaaatgtcctgtgttgttctgcctgtggtcacgttgc------------atttgtc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3507167 378 - 108792865 GGACAGCCTTTCACCTCCCTAGGTTTTCTCCCCGCCTAGAGTCCTGCTTC-TCGCTACAGTCAATTTCCTCTCGCCTG---GGGTTTTCCAACCC-TCGAGCTCTCCTCCAA-CAGTCCAGTGTTTAAGATACTAGC---AAGGGGCCGCCCTGACCCGGGAGATGGTGTAAG--TG-GGGAACAGGGAACAGAAGCAGgaacgcaaaatgccaggcacaaatgcggacacgctgcaggcctccatgcacatggaactctagaaaaggcaaaacccacccacgcagtgtgctt--------aggagacggtggaggggatgaagaaggggcatgagaacctttttggggtgataaaaatgtcctgtgttgttctgcctctgttcatgttgc------------atttgcc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3154076 362 - 7082604 GAACAGCCTTTCACCT-CCTAGCTTTTCTCCCCGCCTGGAGCCCTGCTTC-TCACTGCAGTCAATTTCCTCTCGCTTA---AGGTTTTCCAACCC-TCGAGCTCTCCGCAAA-CAGTCCAGTGCTTAAGATACTAGC---AAGGGGCCGCCCTGACCCGGGAGATGGTGTAAG--TG-GGGATCagggaacagaagcaggagc------------gcacaaatacggacacgctgcaggcctccacgtgcatcgaactctagaagaggcaaaacccacccacacagggtgctt--------aggagagggtggaggggccgaagaaggggcgtgagaaccttt---gggtgatgaaaatgtcctgtgtccttctgcctctgttcatgcttc------------atttgcc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 640217 363 + 5243153 GAACAGCCTTCCACCTCCCTAGGTCTTCTCCGCGCCTGGAGCCCTGCTTC-TCCCTGCAGTCAGTTTCCTCTCGCATA---GGGTTTTCCCACCC-TCGAGCTCTCCTCAAA-CAGTCCAGTGTTTCAGATACGAGC---AAGGGGCCGCCGTGACCCGGGAGATGG-GTAAG---G-GGGATCAGGGAACAGAAGCAGGAAT------------GCACAAATGCGGACACGCTGCAGGCCTCCACGCGCATCGAACTCTAGAAGAGGCAAAACCCACCCACACAGGGTGCTT--------Aggtga-ggtggaggggacgaggaaggggcacgagaacctttcctgggtgatcaaaacatcctgtgttgttctacctctgttcacgttgc------------atttgcc i cebCap1.NW_016107454v1 I 11 C 0 s aotNan1.NW_018509326v1 3382644 375 + 7587287 GGACAGGCTTTCACCTCCCTAGGTTTTCTCCCCGCCTACAGTTCTGCTTC-TCCCT-CAGTCAATTTCCTCTCGCTTA---GGGTTTTCCAACCC-TCGAGCTCTCCTCAAA-CAGTCCAGTGTTTAAGATACTAGC----AGGGGCTGCCGTGACCCGGGAGATGGTGTAAG--TC-GGGA-CAGGGAACAGAAGCAGGAACGCaaaatgccaggcacaaatgcggacacgctgcaggcctccgtgcgcgtcaaactctagaaaaggcaaaacccacccacacagggtgctt--------aggagacggtggaggggacgaagaaggggcatgagaaccttttttgggtgataaaaatgtcctgtgttgttctgcctctgttcatgttgc------------atctgcc i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 677277 402 + 2232271 --ACAAATCCCTGCCTCAC-AGATTTTCTCTACTTTTCTAGGGTTGTTTTGTCACTACAGTTGATTTCACCTTGCTTAAATGGGGTTGTAAACTC-TTAAGCTCTTTAAAAACCATTCCAGTGTTTAAGATACTAATAAGAAGAGAATGAGTGAACACAAAAGAAATTGTAACACTACAGGATTAGAAGATAGAAGCAGAagcaaaagaatccagatactaaagagaacatactgtatgattccaattatatgaaatgctagagaagacaaaactaatctatagtggttgctttgggccgcgggtgggtgtggg-agacctgagcaggggcacaagaaaggttctgggataacagacatgttcta---catactgactgaggtggtattacataatcgaatatatttgtc i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2583869 1291 + 5252280 I a score=1357556.000000 s hg38.chr2_KI270769v1_alt 106820 134 + 120616 aaaattcaaaaacactgaaaatgagtacatttt-attgtatataaatgacacctc-------------aat-aaaAACG---------------AAAGATGTGAGCAACATCCTGGGAA----AAGAAAATGTGATTTCACCTTAAGTGCTTTAGCAG-----------AATTCTATTA s panTro5.chr2A 3569282 134 + 111504155 aaaattcaaaaacactgaaaatgagtacatttt-attgtatgtaaatgacacctc-------------aat-aaaAACG---------------AAAGATGTGAGCAACATCCTGGGAA----AAGAAAATGTGATTTCACCTTAAGTGCTTTAGCAG-----------AATTCTATAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3429584 134 + 114371477 aaaattcaaaaacactgaaaatgagtacatttt-attgtatgtaaatgacacctc-------------aat-aaaAACG---------------AAAGATGTGAGCAACATCCTGGGAA----AAGAAAATGTGATTTCACCTTAAGTGCTTTAGCAG-----------AATTCTATAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 308066 134 + 637652 aaaattcagaaacactgaaaatgagtacatttt-attgtatgtaaatgacacctc-------------aat-aaaAACG---------------AAAGATGTGAGCAACATCCTGGGAA----AAGAAAATATGATTTCACCTTAAGTGCTTTAGCAG-----------AATTCTATTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3103561 134 + 81552678 aaaattcaaaaacacggaaaatgggtgcatttt-aatgtatgtaaatgacacctc-------------aat-aaaAACG---------------AAAGACGTGAGCAACATCCTGGGAA----AAGAAAATGTGATTTCACCTTAAGTGCTTTAGCAG-----------AATTCTATTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3367643 145 + 108979918 aaaatttaaaaacacttaaaatgagtgcatttt-attgtatgtaaattatacctc-------------aat-aaaaaCG---------------AAAGACGTGAGCAATATCCTGGGAA----AAGAAAATGTGATTTCGCCTTAAGTGCTTTAGCAGAATTCTATTATAATTCTATTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5079775 145 - 111193037 aaaatttaaaaacacttaaaatgagtgcatttt-attgtatgtaaattatacctc-------------aat-aaaaaCG---------------AAAGACGTGAGCAATATCCTGGGAA----AAGAAAATGTGATTTTGCCTTAAGTGCTTTAGCAGAATTCTATTATAATTCTATTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3471075 145 + 3644372 aaaatttaaaaacacttaaaatgagtgcatttt-attgtatgtaaattatacctc-------------aat-aaaAACG---------------AAAGACGTGAGCAATATCCTGGGAA----AAGAAAATGTGATTTCGCCTTAAGTGCTTTAGCAGAATTCTATTATAATTCTATTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3428019 146 - 10304083 aaaattcaaaaacacttaaaatgagtgcatttt-attgtatgtaaattatacctc-------------aataaaAAACG---------------AAAGACCTGAGCAATATCCTGGGAA----AAGAAAATGTGATTTCACCTTAAGTGCTTTAGCCGAATTCTATTATAATTCTATTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3528533 145 - 107702431 aaaatttaaaaacacttaaaatgagtgcatttt-attgtatgtaaattatacctc-------------aat-aaaaaCG---------------AAAGAGGTGAGCAATATCCTGGGAA----AAGAAAATGTGATTTCGCCTTAAGTGCTTTAGCAGAATTCTATTATAATTCTATTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1059650 145 + 1565135 aaaattcaaaaacacttaaaatgagtgcatttt-attgtatgtaaattatacctc-------------aat-aaaaaCG---------------AAAGACCTGAGCAATATCCTGGGAA----AAGAAAATGTGATTTCACCTTAAGTGCTTTAGCCGAATTCTATTATAATTCTATTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3422009 112 - 13651311 aaaattcaaaaacacttaaaatgagtgcatttt-attgtacgtaaattatacctc-------------aat-aaaAACG---------------AAAGA-------------------------------------TTTCCCTTAAGTGCTTTAGCAGAATTCTATTATAATTCTATTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3507545 134 - 108792865 acaattggaaaacacttaaaatgagaccatttt-attgtatgtaaatgataactc-------------aat-aaaaaCG---------------AAAGATGTGAACGATTTCCTGGGAA----AAGAAAATGTAATTTCACCTTAAGTGCTTTAGCAG-----------AATTCTATTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3154438 134 - 7082604 acaatttgaaaacgcttaaaatgagtgcatttt-attgtatgtaaatgataactc-------------aat-aaaAACG---------------AAAGATGTGAACAATTTCCTGGGAA----AAGAAAATGTTATTTCACCTTAAGTGCTTTAGCAG-----------AATTCTATTA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 640580 134 + 5243153 acaattcgaaagcacttaaaatgagtgcttttt-attgtatgtaaatgataactc-------------aat-aaaaaCG---------------AAAGATGTGAACAATTTCCTGGGAA----AAGAAAATGTTATTTCACCGTTAGTGCTTTAGCAG-----------AATTCTATTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3383019 134 + 7587287 acaattcgagcacacttaaaatgagtgcatttt-attgtatgtaaatgataactc-------------aat-agaAACG---------------AAAGATGTGAACCGTTTCCTGGGAA----AAGAAAATGTAATTTCACCTTAAGTGCTTTAGCAG-----------AATTCTATTA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2585160 149 + 5252280 AATATTATGAAATAAtaaaaa-gagtacattttcattttatgtgagttacacctc-------------act-aaaactgatttttaaaaCAATCAAAGATGTGAGCAGTACTGTGGGAA----AACAATGTGTTACTTCACCTGAAGGGCTCTGGCAG-----------AATCCCGTCA i otoGar3.GL873658 I 1291 C 0 s dasNov3.JH580157 677679 151 + 2232271 -aaatataaatgtgcctaaaataggtgcattttaattgtaagtaaattatacctcaGAGTTAATTTTAAAA-TAAACCA---------------AAAGATCTGAACGGTGCTCTGAGGAAACTAACAAAATGCTATTTCACCTTGAGTGTTTTGACAG-----------AATTGTGTTA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I a score=145202.000000 s hg38.chr2_KI270769v1_alt 106954 25 + 120616 TATGCCTCAGCTCTTAC---------TC-----------------tttctt s panTro5.chr2A 3569416 25 + 111504155 TATGCCTCAGCTCTTAC---------TC-----------------tttctt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3429718 25 + 114371477 TATGCCTCAGCTCTTAC---------tc-----------------tttctt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 308200 25 + 637652 TATGCCTCGGCTCTTAC---------tc-----------------tttctt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3103695 23 + 81552678 TATGCCTCAGCTCTTAC---------tc-------------------tctt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3367788 27 + 108979918 TACCCCTCAGCtcttgt---------tc---------------tttttttt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5079920 25 - 111193037 TACCCCTCAGCtcttgt---------tc-----------------tttttt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3471220 25 + 3644372 TACCCCTCAGCTCttgt---------tc-----------------tttttt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3428165 23 - 10304083 TACCCGTCAGCTCTTAC---------TC-------------------tttt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3528678 25 - 107702431 TACCCCTCAGCTCTTAC---------tc-----------------ttttta i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1059795 23 + 1565135 TACCCGTCAGCTCTTAC---------TC-----------------tttt-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3422121 42 - 13651311 TACCCCTCAGCTCCTAC---------TCttttgttttgttttgtttttttt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3507679 23 - 108792865 TCTGCCGCAGCtcttac----------------------------tctttt i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3154572 36 - 7082604 TCTGCCTCAGCTCTTACttttttttttt---------------tttttttt i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 640714 27 + 5243153 TCTGCCTCAGCTCTTAC---------tc---------------tttttctt i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3383153 27 + 7587287 TCTGCCTCAGCtcttac---------tc---------------tttttttt i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2585309 25 + 5252280 CCGGCCTCAACTCTGAC---------CC-----------------CTGCCT i otoGar3.GL873658 C 0 I 451 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 677830 0 + 2232271 C a score=911849.000000 s hg38.chr2_KI270769v1_alt 106979 104 + 120616 cttttttgagacagagtctcgctct-gtcacccaggctggagtgcagtggccacaatcacagctcactgcagcctcgacctcccaggctctaagaatcctcccac s panTro5.chr2A 3569441 104 + 111504155 cttttttgagacagagtctcgctct-gtcacccaggctggagtgcagtggccacaatcacagctcactgcagcctcgacctcccaggctctaagaatcctcccac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3429743 104 + 114371477 cttttttgagacagagtctcgctct-gtcacccaggctggagtgcagtggccacaatcacagctcactgcagccttgacctcccaggctctaagaatcctcccac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 308225 103 + 637652 c-tttttgagacagagtctcgctct-gtcacccacgctggagtgcagtggccacaatcacagctcactgcagcctcgacctcccaggctctaagaatcctcccac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3103718 105 + 81552678 cttttttgagacagagtctcgctctcgtcacccaggctggagtgcagtggccacaatcgcagctcactgcagcctcgacctcccaggttctaataatcctcccac i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3367815 104 + 108979918 tttttttgagacagagcctcgctct-gtcacccaggctggagcgcagcgagcacgatcacagctcgccgcagcctcgacctcccaggccctaagaatcctcccac i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5079945 104 - 111193037 tttttttgagacagagcctcgctct-gtcacccaggctggagcgcagcgagcacgatcacagctcgccgcagcctcgacctcccaggccctaagaatcctcccac i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3471245 104 + 3644372 tttttttcagacagagcctcgctct-gtcacccaggctggagcgcagcgagcacgatcacagcttgtcgcagcctcgacctcccaggccctaagaatcctcccac i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3428188 102 - 10304083 cttttttgagacagagccttgctct-gtcgcccaggctggagggcagcgagcacgatcacagct--ccacagcctcgacctcccaggccctaagaatcctcccac i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3528703 102 - 107702431 tttttttgagacagagcctcgctct-gtcgcccaggctggagcgcagggagcacgatcacagct--ccacagccttgacctcccaggccctaagaatcctcccac i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1059818 102 + 1565135 cttttttgagacagagccttgctct-gtcgcccaggctggagggcagcgagcacgatcacagct--ccacagcctcgacctcccaggccctaagaatcctcccac i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3422163 104 - 13651311 tgtttttgagacagagccttgctct-gtcgcccaggttggagcgcagcgagcacgatcacagctcgttgcagcctcgacctcccaggctctaagaatcctcccac i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3507702 101 - 108792865 tttttttgagac--agtcctgccat-gtcacgcaggct-gagtgtagtgaccacaatcacagctcactgcagcctcaacttcccaggctgtaatagtcctcccac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3154608 102 - 7082604 tttttttaagac--agtcttggtct-gtcgcgcaggctggagtgcagtggccacagtcacagctcactgcagccccgacttcccaggctgtaatgatcctcccac i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 640741 102 + 5243153 cttttttgagac--agtcttgctct-gtcgcgcaggctggagtgcagtggccacaatcacagctcaccgcagcctcgacttcccaggctgtaataatcctcctac i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3383180 102 + 7587287 ctcctttgagac--attcttgccct-gtcgtgcaggctggagtgcagtggccacaatcacagctcactgcagcctcgacttcccaggctgtaataatcctcccac i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e dasNov3.JH580157 677830 0 + 2232271 C e otoGar3.GL873658 2585334 451 + 5252280 I a score=2358710.000000 s hg38.chr2_KI270769v1_alt 107083 248 + 120616 cttagcctcctgagtagctgagattacaggcatgagccactgtgcccagGAACTTACTCTTGCCTGTAAAAATACAGCTCTGAAGTGAAGAAATCCCAGGCGCCACAT---------CAAGGAGGCGAAACTAGAGTCCGCAGGAGGCCAGCCCCGCACGA--------------GGAGTTTCAAA-CACTAAGGATCCTGACAGGGAAAAGTTATATGAAGCAAGAAAGGCAATTTAAAGCGATAGTTTATCATATGAATGTTTCGTTCTT s panTro5.chr2A 3569545 248 + 111504155 cttagcctcctgagtagctgagattacaggcatgagccactgtgcccagGAACTTACTCTTGCCTGTAAAAATACAGCTCTGAAGTGAAGAAATCCGAGGCGCCACAT---------CAAGGAGGCGAAACTGGAGTCCGCAGGAGGCCAGCCCCGCACGA--------------GGAGTTTCAAA-CACTAAGGATCCTGACAGGGAAAAGTTATAGGAAGCAAGAAAGGCAATTTAAAGCGATAGTTTATCATATGAATGTTTCGTTCTT i panTro5.chr2A C 0 I 1 s panPan2.chr2A 3429847 248 + 114371477 cttagcctcctgagtagctgagattacaggcatgagccactgtgcccagGAACTTACTCTTGCCTGTAAAAATACAGCTCTGAAGTGAAGAAATCCGAGGCGCCACAT---------CAAGGAGGCGAAACTGGAGTCCGCAGGAGGCCAGCCCCGCACGA--------------GGAGTTTCAAA-CACTAAGGATCCTGACAGGGAAAAGTTATATGAAGCAAGAAAGGCAATTTAAAGCGATAGTTTATCATATGAATGTTTCGTTCTT i panPan2.chr2A C 0 I 1 s gorGor5.CYUI01015435v1 308328 248 + 637652 cttagcctcctgagtagctgagattacaggcatgagccactgtgcccagtaacttACTCTTGCCTGTAAAAATACAGCTCTGAAGTGAAGAAATCCGAGGCGCCACAT---------CAAGGAGGCGAAACTGGAGTCTGCAGGAGGCCAGCCCCGCACGA--------------GGCATTTCAAA-CACTAAGGATCCTGACAGGGAAAAGTTATATGAAGCAAGAAAGGCAATTTAAAGCGACAGTTTATCATATGAATGTTTCGTTCTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3103823 247 + 81552678 cttagcctcctgagtggctgagattacaggcctgagccacTGC-CCCAGTAACTTACTCTTGCCTGTAAAAATACAGCTCTGAAGTGAAGAAATCCGAGGCGCCACAT---------CAAGGAGGCGAAACCAGAGTCCGCAGGAAGCCAGCCCCGCACGA--------------GGAGTTTCAAA-CGCTAAGGATCCTGACAGAGAAAAGTTATATGAAGCAAGAAAGGCAATTTAAGGTGATAGTTTATCATATGAATGTTTCATTCTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3367919 257 + 108979918 cttagcctcatgagtagctgagattacaggcatgagccactgcacccagtaacttACTCTTGCCTGTAAAAACACACCTCTGAAGTGAAGAAATCCGAGGCGCCACATCAAGGAGGCCAAGGAGGCGAAACTGGAGTCTGCAGGAAGCCAGCGCCGCACGA--------------GGAGTTTCAAA-CGCTAAGGATCCTGACAGGGAAAAGTTATATGAAGCAAGAAAGGCAATTTAAGGTGATATTTTATCATATGAATGTTTCATTCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5080049 257 - 111193037 cttagcctcatgagtagctgagattacaggcatgagccactgcacccagtaacttACTCTTGCCTGTAAAAACACACCTCTGAAGTGAAGAAATCCGAGGCGCCACATCAAGGAGGCCAAGGAGGCGAAACTGGAGTCTGCAGGAAGCCAGCGCCGCACGA--------------GGAGTTTCAAA-CGCTAAGGATCCTGACAGGGAAAAGTTATATGAAGCAAGAAAGGCAATTTAAGGTGATATTTTATCATATGAATGTTTCATTCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3471349 257 + 3644372 cttagcctcacgagtagctgagattacaggcatgagccactgcacccagtaacttACTCTTGCCTGTAAAAACACACCTCTGAAGTGAAGAAATCCGAGGCGCCACATCAAGGAGGCCAAGGAGGCGAAACTGGAGTCTGCAAGAAGCCAGCGCCGCACGA--------------GGAGTTTCAAA-CGCTAAGGATCCTGACAGGGAAAAGTCATATGAAGCAAGAAAGGCAATTTAAGGTGATATTTTATCATATGAATGTTTCATTCTT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3428290 257 - 10304083 cttagcctcatgagtagctgagattacaggcgtgagccactgcacccagTACCTTACTCTTGCCTGTAAAAATACAGCTCTGAAGTGAAGAAATCCCAGGCGCCACATCAAGGAGGCCAAGGAGGCGAAACTGGAGTCTGCAGGAAGCCAGCGCCGCACGA--------------GGAGTTTCAAA-CGCTAAGGATCCTGACAGGGAAAAGTTATATGAAGCAAGAAAGGCAATTTAAGGTGATATTTTATCATATGAATGTTTCATTCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3528805 257 - 107702431 cttagcctcatgagtagctgagattacaggcatgagccactgcacccagtaacttACTCTTGCCTGTAAAAACACAGCTCTGAAGTGAAGAAATCCGAGACGCCACATCAAGGAGGCCAAGGAGGCGAAACTGGAGTCTGCAGGAAGCCAGCGCCGCACGA--------------GGAGTTTCAAA-CGCTAAGGATCCTGACAGGGAAAAGTTATATGAAGCAAGAAAGGCAATTTAAAGTGATATTTTATCATATGAATGTTTCATTCTT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1059920 257 + 1565135 cttagcctcatgagtagctgagattacaggcgtgagccactgcacccagTAACTTACTCTTGCCTGTAAAAATACAGCTCTGAAGTGAAGAAATCCGAGGCGCCACATCAAGGAGGCCAAGGAGGCGAAACTGGAGTCTGCAGGAAGCCAGCGCTGCACGA--------------GGAGTTTCAAA-TGCTAAGGATCCTGACAGGGAAAAGTTATATGAAGCAAGAAAGGCAATTTAAGGTGATATTTTATCATATGAATGTTTCATTCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3422267 248 - 13651311 cttagcctcatgagtagctgagattccaggcatgagccactgcacccagtaacttACTCTTGCCTATAAAAATACAGCTCTGAAGTGAAGAAATCCAAGGCGCCACAT---------CAAGGAGGCGAAACTGGAGTCTGCAGGAAGCCAGCGCCGCACCA--------------GGAGTTTCAAA-CGCTAACGATCCTGACAGGGAAAAGTTATATGAAGCAAGAAAGGCAATTTAAAGTGATATTTTATCATATGAATGTTTCATTCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3507803 252 - 108792865 ctcagccttgtgagtagctgagattgcaggcatgagccactgtgcccA-AAACTTACTCTTGCCCATAAAAACACCGCTCTGAAGCGACGAAACCTGAGGCGCCACATCCAGGAGGCCGAGGAGGAGAAA---GAGTCCG-GGGAAGCCAGCCCAGCACAC--------------GGAGTTTCAAA-CGCTACGAATTCTGACAGGGGAAAGTTATATGAAGCAAGAAAGGCAACTTAAAAAGACAGTTTATCATATGAACATTTAATTCTT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3154710 253 - 7082604 ctcagcctcgtgaacagctgagactgcaggcacgagccactgcgcccagAAACTTACTCTTGCCCGTAAAAACACAGCTCTGAAGCGAAGAAATCTCAGGCACCACATCCAGGAGGCTGAGAAGGCGAAAGCGGAGTCCGAGGGAAGCCAGCCCAGCAC------------------AGTTTCAAA-CGCTACGAATTCAGACGGGGAAAAATTATATGAAGCAAGAAAGGCAACTTAAAGAGACAGTTCATCATATGAACGTTTAATTCTT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 640843 257 + 5243153 ctcagcctcgtgaacagctgagactgcaggcatgagccacggcgcccagAAACTTACTCTTGCCCGTAAAAACACAGCTCTGAAGAGAAGAAACCTGAGGCGCCGTATCCAGGAGGCCGAGCAGGCGAAAGCGGAGTCCGAGGGAAGCCAGCCCAGCACAA--------------GGAGTTTCAAA-TGCTACGAATTCTGACGGGGAAAAGTTATATGAAGCAAGAAAGGCAACTTAAAGAGACAGTTTATCATATGAATGTTTAATTCTT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3383282 248 + 7587287 ctcagcctcgtgaatagcagagattgcaggcgtgagctgctgcgcccagAAACTTACTCTTGCCCCTAA---------TCTGAAGCCAAGAAACCTGAGGCGCCATATCCAGGAGGCTGAGGAGGCGAAAGCGGAGTCCGCGGGAAGCCAGCCCAGCACGA--------------GGAGTTTCAAA-TGCTACGAATTCTAACGGGGAAAAGTTACATGAAGCAAGAAAGGCAACTTACAGAGACCGTTTATCACATGAATGTTTAATTCTT i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 677830 219 + 2232271 CCTAAC------------------------------------TGCCCAAGTCTTAACCATTGCCTGTGAAAATA--GCTCAAGCATGAAGAAACCCGAGAAGCCCCT----------CACGGAAAGAGAACGTGAGTCACCGAGAAGCCGACCCGGTGCGCTTGGAGCAGGAAATGGAGTTAAAAAGTTCTGCGAACCGTAATAG-GAAAAACTGTTTTAAGCAA-AAAGGC-ATAAAAAGTGATGGTC--TCTTTTTAATGTTTAAATCTT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91444153 3216 - 120129022 I e otoGar3.GL873658 2585334 451 + 5252280 I a score=912856.000000 s hg38.chr2_KI270769v1_alt 107331 84 + 120616 AAAAATGAACAAGCTCTATTTATAATGCCCATTTAGAAATGAATCCATT-AAA-------AAAAATCAGTAGATCAGCACTTATTTTAATTA s panTro5.chr2A 3569794 85 + 111504155 AAAAATGAACAAGCTCTATTTATAATGCCCATTTAGAAATGAATCCATTAAAA-------AAAAATCAGTAGATCAGCACTTATTTTAATTA i panTro5.chr2A I 1 C 0 s panPan2.chr2A 3430096 85 + 114371477 AAAAATGAACAAGCTCTATTTATAATGCCCATTTAGAAATGAATCCATTAAAA-------AAAAATCAGTAGATCAGCACTTATTTTAATTA i panPan2.chr2A I 1 C 0 s gorGor5.CYUI01015435v1 308576 84 + 637652 AAAAATGAACAAGCTCTATTTATAATGCCCATTTAGAAATGAATCCATT-AAA-------AAAAATCAGTAGATCAGCACTTATTTTAATTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3104070 84 + 81552678 AAAAATGAACAAGCTCTATTTATAATGCCCATTTAGAAATGAATCCATT-AAA-------AAAAATCAGTAGATCAGCACTTATTTTAATTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3368176 83 + 108979918 AAAAATGAACAAGCTGTATTTATAATGCCCATTTAGAAATGAATCCAT--AAA-------AAAAATCAGTAGATCAGCACTTATTTTAATTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5080306 83 - 111193037 AAAAATGAACAAGCTGTATTTATAATGCCCATTTAGAAATGAATCCAT--AAA-------AAAAATCAGTAGATCAGCACTTATTTTAATTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3471606 83 + 3644372 AAAAATGAACAAGCTGTATTTATAATGCCCATTTAGAAATGAATCCAT--AAA-------AAAAATCAGTAGATCAGCACTTATTTTAATTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3428547 83 - 10304083 AAAAATGAACAAGCTGTATTTATAATGTCCATTTAGAAATGAATCCAT--AAA-------AAAAATCAGTAGATCAGCACTTATTTTAATTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3529062 83 - 107702431 AAAAATGAACAAGCTGTATTTATAATGCCCATTTAGAAATGAATCCAT--TAA-------AAAAATCAGTAGATCAGCACTTATTTTAATTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1060177 83 + 1565135 AAAAATGAACAAGCTGTATTTATAATGCCCATTTAGAAATGAATCCAT--AAA-------AAAAATCAGTAGATCAGCACTTATTTTAATTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3422515 84 - 13651311 AAAAATCAGCAAGCTCTATTTATAATGCCCATTTAGAAATAAATCCATA-AAA-------AAAAATCAGTCCATCAGCACTTATTTTAATTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3508055 82 - 108792865 ACAAACAAACAAGCTCTATTTATAATGCCCATTTAGAAATGAATTCAT---AA-------AAACATCAGTAGCTTGGCCCTTGATTTAATTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3154963 82 - 7082604 AAAAATGAACAAGCTCTATTTATAATGCCCATTTAGAAATGAATTCAT---AA-------AAACATCAGTAGATCAGCACTTACTTTAATGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 641100 82 + 5243153 AAAAATGAACAAGCTCTATTTATAATGCCCATTTAGAAATGAATTCCT---AA-------AAACATCAGTAGATCGGCACTCACTTTAATTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3383530 82 + 7587287 AAAAATGAACAGGCTCTATTTATAATGCCCACTTAGAAATGAATTCAT---AA-------AAACATCAGTAGATCAGCACTTACTTTAATTA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2585785 90 + 5252280 aaaaaCGAACAATTTCCATTGACAATGACCATTTAGAAATGAATCTCT--AAATAACCCTCAAAACCAGTAGATCAGCACACATTTTAATTA i otoGar3.GL873658 I 451 C 0 s dasNov3.JH580157 678049 82 + 2232271 -AAAATGAACAAGTTCCATTTACAATCATCATTTATAATATAAGCCAT--TTT-------AAAAATCAGTACACATGCAGTTAATTTAATTA i dasNov3.JH580157 C 0 I 370 e mm10.chr12 91444153 3216 - 120129022 I a score=3858230.000000 s hg38.chr2_KI270769v1_alt 107415 386 + 120616 CTGAGATAGAGTCACACTTGACAGAAGCAAGCCCTGCGGTAT--ATGGCATCATCACACCACCGGTGGGTATTTTAATCCTAAAACTGAGACAGAGTTTACTTAAACATTTAAGGCTTGAGTTTCCTCTGT------------------------ACAGTGTGGAGGTGATTAAGAAAATTAATCCTAACATGAAGATTTTTCATCCAGTTAAAAAAAGAAATACTTTAAAAACGACCTGCCCTTCCAAAACATGAAGTTAACTTG-GAGTTTTTCTGTGA-TATGACAAACTAGGCATAATCCTATCTCGGAATTGTTGAGTAGAAAATTTATGTACTAATACTCCTGTTAAAATTCAACAGCTTTATTGTGAAAG-------------------AATCCAGAGATCTCACACTGAAAAAATACTAACACAG--------------- s panTro5.chr2A 3569879 385 + 111504155 CTGAGACAGAGTCATACTTGACAGAAGCAAGCCCTGCGGTAT--ATGTTATCATCACACCACCGGTGGATATTTTAATCCTAAAATTGAGACAGAGTTTACTTAAACATTTAAGGCTTGAGTTTCCTCTGT------------------------ACAGTGTGGAGGTGATTAAAAAAATTAATCCTAACATGAAGATTTTTCATCCAGTTAAAAAAAGAAATACTTTTAAAATGACCTG-CCTTCCAAAACATGAAGTTAACTTG-GAGTTTTTCTATGA-TATGACAAACTAGGCATAATCCTATCTCGGAATTGTTGAGTAGAAAATTTATGTACTAATACTCTTGTTAAAATTCAACAGCTTGATTGTGAAAG-------------------AATCCAGAGATCTCACACTGAAAAAATACTAACACAG--------------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3430181 384 + 114371477 CTGAGATAGAGTCATACTTGACAGAAGCAAGCCCTGCGGTAT--ATGTTATCATCACACCACCGGTGGATATTTTAATCCTAAAATTGAGACAGAGTTTACTTAAACATTTAAGGCTTGAGTTTCCTCTGT------------------------ACAGTGTGGAGGTGATTAAAAAAATTAATCCTAACATGAAGATTTTTCATCCAGTT-AAAAAAGAAATACTTTAAAAACGACCTG-CCTTCCAAAACATGAAGTTAACTTG-GAGTTTTTCTGTGA-TATGACAAACTAGGCATAATCCTATCTCGGAATTGTTGAGTAGAAAATTTATGTACTAATACTCTTGTTAAAATTCAACAGCTTGATTGTGAAAG-------------------AATCCAGAGATCTCACACAGAAAAAATACTAACACAG--------------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 308660 384 + 637652 CTGAGATAGAGTCATACTTGACAGAAGCAAGCCCTGCGGTAT--ATGTTATCATCACACCA-CGGTGGATATTTTAATCCTAAAATTGAGACAGAGTTTACTTAAACATTTAAGGCTTGAGTTTCCTCTGT------------------------ACAGTGTGGAGGTGATTAAAATAATTAATCCTAACATGAAGATTTTTCATCCAGTTAAAAAAAGAAATACTTTAAAAACGACCTG-CCTTCCAAAACATGAAGTTAACTTG-GAGATTTTCTATGA-TATGACAAACTAGGCATAATCCTATCTCGGAATTGTTGAGTAGAAAATTTATGTACTAATACTCTTGTTAAAATTCAACAGCTTGATTGTGAAAG-------------------AATCCAGAGATCTCACACTGAAAAAATACTAACACAG--------------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3104154 386 + 81552678 CTGAGATAGAGTCATACTTGACAGAAGCAAGCCCTGGGGTAT--ATGTTACCATCACATCACCTGTGGATATTTTAATCCTAAAATTGAGACAGAGTTTACTTAAACATTTAAGGCTTGAGTTTCCTCTGT------------------------ACAATGTGGAGGTGATTAAAAAAATTAATCCTAACATGAAGATGTTTCATCCAGTTAAAAAAAGAAATACTTTAAAAACGACCTGCCTTTCCAAAACGTGAAGTTAACTTG-GGGTTCTCCTATGA-TATAACAAACTAGGCGTAATCCTATCTCAGAATTGTTGAGTAGAAAATGTATGTATTAATACTCTTGTTAAAATTCAACAGCTTGATTGTGAAAG-------------------AATCCAGAGATCTCACACTGAAAAAATACTAACACAG--------------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3368259 387 + 108979918 CTGAAATAGAGTCATACTTGACAGAAGCAAGCCCTGGGGTATGTATGTTATCATCACACCACCTGTGGATACTTTAATCCTAAAATTGAGACAGAGTTTACTTAAACATTTAAGGCTTGAGTTTCCTCTGT------------------------CCAATGTGGAGGTGATTAAAA-AATTAATCCTGACATGAAGATTTTTCATCCAGTTAAAAAAGGAAATACTTTAAAAATGACCTGCCCTTCCAAAACATGAAGTTAACTTG-GGGTTTTTCTATGA-TGTAACAAACTAGGCATAATCCTGTCTCAGAATTGTTGAGCAGAAGATTTATGTACTAATACTCTTGTTAAAATTCAACAGCTTGATTGTGAAAG-------------------AATCCAGAGACCTCACACTGAAAAAATACTAACACAG--------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5080389 387 - 111193037 CTGAAATAGAGTCATACTTGACAGAAGCAAGCCCTGGGGTATGTATGTTATCATCACACCACCTGTGGATACTTTAATCCTAAAATTGAGACAGAGTTTACTTAAACATTTAAGGCTTGAGTTTCTTCTGT------------------------CCAATGTGGAGGTGATTAAAA-AATTAATCCTGACATGAAGATTTTTCATCCAGTTAAAAAAGGAAATACTTTAAAAATGACCTGCCCTTCCAAAACATGAAGTTAACTTG-GGGTTTTTCTATGA-TGTAACAAACTAGGCATAATCCTGTCTCAGAATTGTTGAGCAGAAGATTTATGTACTAATACTCTTGTTAAAATTCAACAGCTTGATTGTGAAAG-------------------AATCCAGAGACCTCACACTGAAAAAATACTAACACAG--------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3471689 387 + 3644372 CTGAAATAGAGTCATACTTGACAGAAGCAAGCCCTGGGGTATGTATGTTATCATCACACCACCTGTGGATACTTTAATCCTAAAATTGAGACAGAGTTTACTTAAACATTTAAGGCTTGAGTTTCCTCTGT------------------------CCAATGTGGAGGTGATTAAAA-AATTAATCCTGACATGAAGATTTTTCATCCAGTTAAAAAAGGAAATACTTTAAAAATGACCTGCCCTTCCAAAACATGAAGTTAACTTG-GGGTTTGTCTATGA-TGTAACAAACTAGGCATAATCCTGTCTCAGAATTGTTGAGCAGAAGATTTATGTACTAATACTCTTGTTAAAATTCAACAGCTTGATTGTGAAAG-------------------AATCCAGAGATCTCACACTGAAAAAATACTAACACAG--------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3428630 383 - 10304083 CTGAAATGGAGTCATACTTGACAGAAGCAAGCCCTGGGGTATGTATGTTATCATCACACCACCTGTGGATACTTTAATCCTAAAATTGAGACAGAGTTTACTTAAACATTTAAGGCTTGAGTTTCCTCTGT------------------------CCAATGTGGAGGTGATTAAAA-AATTAATCCTGACATGAAGATTTTTCATCCAGTTAAAAAAGGAAATACTTTAAAAATGACCTGCCCTTCCGAAACATGAAGTTAACTT--GGGTTTTCCTATGA-TGTAACAAACTAGGCATAATCCTATCTCAGAATTGTTG---AGAAGATTTATGTACAAATACTCTTGTTAAAATTCAACAGCTTGATTGTGAAAG-------------------AATCCAGAGATCTCACAATGAAAAAATACTAACACAG--------------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3529145 383 - 107702431 CTGAAATAGAGTCATACTTG-CAGAAGCAAGCCCTGGGGTATGTATGTTATCATCACACCACCTGTGGATACTTTAATCCTAAAATTGAGACAGAGTTTACTTAAACATTTAAGGCTTGAGTTTCCTCCGT------------------------CCAATGTGGAGGTGATTAAAA-AATTAATCCTGACATGAAGGTTTTTCATCCAGTTAAAAAAGGAAATACTTTAAAAATGACTTGCCCTTCCAAAACATGAAGTTAACTTG-GGGTTTTCCTATGA-TGTAACAAACTAGGCATAATCCTATCTCAGAATTGTTG---AGAAGATTTATGTACTAATACTCTTGTTAAAATTCAACAGCTTGATTGTGAAAG-------------------AATCCAGAGATCTCACAATGAAAAAATACTAACACAG--------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1060260 383 + 1565135 CTGAAATAGAGTCATACTTGACAGAAGCAAGCCCTGGGGTATGTATGTTATCATCACACCACCTGTGGATACTTTAATCCTAAAATTGAGACAGAGTTTACTTAAACATTTAAGGCTTGAGTTTCCTCTGT------------------------CCAATGTGGAGGTGATTAAAA-AATTAATCCTGACATGAAGATTTTTCATCCAGTTAAAAAAGGAAATACTTTAAAAATGACCTGCCCTTCTGAAACATGAAGTTAACTT--GGGTTTTCCTATGA-ATTAACAAACTAGGCATAATCCTATCTCAGAATTGTTG---AGAAGATTTATGTACTAATACTCTTGTTAAAATTCAACAGCTTGATTGTGAAAG-------------------AATCCAGAGATCTCACAATGAAAAAATACTAACACAG--------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3422599 384 - 13651311 CTGAAATAGAGTCACACTTGGCAGAAGCGAGCCGTGGGGTATTGATGTTGTCATCACACCACCTGTGGATATTTTAATCCTAAAATTGAGACAGAGTTTACTTAAACATTTAAGGCTTGGGTTTCCTCTGT------------------------GCAATGTGGAGGTGATTAAAA-AATTAATCCTGACATGGAGATTTTTCATCCAGTTAAAAAAAGAAATACTTTAAAAATGACCTGCCCTTCCAAAACATGAAGTTAACTTG-GGCTTTTTCTATGA-TGTAACAAACTAGGCATAATCCTATCTCCGAATTGTTG---AGTAGATTTATGTACTAATACTCTTGTTAAAATTCAACAGCTTGATTGTGAAAG-------------------AATCCAGAGATCACACACTGAAAAAATACTAACACAG--------------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3508137 372 - 108792865 CTGAAATAATGCCATACCTCACAGAGCCAGTCC--GGGATATTCACGTTATCA---CACCACCTGCGCATATTTT-------ACATTGAGACGGCGTTTCCTTACACATTTAAGGCTTGAGTGTCCTCTGT------------------------ACAGTGTGGAGGGAATTTAAA-AATTAATCCTAACATAAAGA-TTTTTATCCAGTTAAATAA--AAATACTTAGAAAACGATCTGTCCTTCCAAAACATAAGGTTAACTTG-GGCTTTTTCTGTGA-TATAACACACTAGGCATAATCGTATCTCAGAATTGGTGGGTAGAAAATGTATGTACTAATACTCTTCTTAAAATTCAAGAGCTTCATTGTGAAAG-------------------AATCTAGAGACCTCACAGTGAAAAAATACTAACACAG--------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3155045 374 - 7082604 CTGAAATAGAGCCATACCTCACAGAGCCAGTCC--GGGATGTTCGCCTTATCATCGCACCACCTGCATATATTTT-------AAATTGAGACA--GTTTCCTTACACATTTAAGGCTTGAATTTCCGCTGT------------------------ACAGTGTGGAGGGAATTAAAA-AATTAATTCCAACATGAAGATTTTTTATCCAGTTAAATAA--AAATACTTAGAAAATGACCTGTCCTTCCAAAACATAAGGTTAACTTG-GGGTTTTTCTATGA-TATAACACACTAGGCATAATCGTATCTCAGAATTGGTGGGTAGAAAATGTATGTACTAATGCTCTTGTTAAAATTCAAGAACTTGACTCTGAAAG-------------------AATCTAGAGATCTCACAGTGAAAAAACACTAACACAG--------------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 641182 376 + 5243153 CTGAAATAGAGCCATACCCCACAGAGCCAGTCC--GGGATGTTCATGTTACCATCACACCACCTGCGGATATTTT-------AAATTGAGACGGAGTTTCCTTACACATTTAAGGCTCCAGTTTCCTCTGT------------------------ACAGTGTGGAGGGAATTTAAA-AATTAATCCTAACATGAAGATTTTTTATCCAGTTAAATAA--AAATACTTAGAAAACGACCTGTCCTTCCAAAACATAAGGTTCACTTG-GGGTTTTTCTGTGA-TATAACACACTAGGCATAATCGTATCTCAGAATTGGTGGGTAGAAAATGTACGTACTAATACTCTTGTTAAAATTCAAGAGCTTGATTGTGAAAG-------------------AATCTAGAGACCTCACAGTGAAAAAATACTAACACAG--------------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3383612 376 + 7587287 CTGAAACAGAGCCATACCTCGCAGAGCCAGTCC--GGGATGTCCATGTTAGCATCACACCACCTGCGTATATTTT-------AAATTGGGACGGAGTTTCCTTACACATTTAAGGCTTGAGTTTCCTCTGT------------------------ACAGTGTGGAGGGAATTAAAA-AATTAATCCTAACATGAAGATTTTTTATCCAGTTAAATAA--AAATACTTAGAAAACGACCTGTCCTTCCAAAACATAAGGTTAACTTG-GGGTTTTTCTATGA-TATAACACACTAGGCATAATCGTATCTCAGAATTGGTGGGTAGAAAATGTATGTACTAATACTCCTGTTAAAATTCAAGAGCTTGATTGTGAAAG-------------------AATCTAGAGATCTCGCAGTGAAAAAATACTAACACAG--------------- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2585875 343 + 5252280 TTGAAATAGAACAATACTTGACAGAAGCCGGCCCTGGGATATCTGTGATATTATCACGCTCCCTACATACATTTTAATCCTAAAGCTAACACACAGTTTACTTAAACATCTCAGGCTTGAGTTTCCTCTGT------------------------GCAGTGGGA-------------AACAGACCCC-----------------CCCAG-------------AGCTTAGGAATCATCTTGCCCTTGTAAAACATAAAGGCAACTTT-GGGTTTTTATAAGA-TTATATAAACTAGGCATAACTGTATCTCAGAATTGTTAAGGAAAAAAATAATGTACCAA--ATCTTGTTAAAATTCAAAAGCTAGATTTCAAAAT-------------------AACCTATAAACCTCACACGGAAACAATACTAACACAG--------------- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 678501 441 + 2232271 ccAAGAGAAAGTAATTTTTGACAGAAGAAAATCCTGGGATATTTATGTACTTACCATGCTGCCTGTGTACATTTTATTCCTAAAATTCAGAAAGCAGTCAGTTCAATATCTAATAGATGAATTTTCTCTATTCAGGGGGAAACTAATCCCCAAGACCAATGTGGAGGTGA-TAAAA-GACTACTTTTTAAATGAAAATTTTTAAACCAGTTTTTAAA--AAATA-TTTAGAAACAATCTGCCCTTCAAAAAC-TTAGGCTGATTTGTGTTTTTTCCTATGATTATAATACATTAGGTATAACTGTATCACAGAATTGTTCAGTAGAAAAACAGTATACTAGTTTTCTTATTAAAATTCCAAGGCTTGATTGTGAAAAAGGTATAGTAGGCAGGTTTAATTTAGAAATC-CAAACTGGAAAAACACTACTATTAGTATGCattataaat i dasNov3.JH580157 I 370 C 0 e mm10.chr12 91444153 3216 - 120129022 I a score=2895830.000000 s hg38.chr2_KI270769v1_alt 107801 286 + 120616 ------------------------------CTCATATATAAA--TTACTTATCTATA---AGAACAATTATAGAAGGAATCTAAAT----------------------GGGGCAATTTTAACAAACCAGGC-AAAATATCACA--TATACCTGAATATA-AGGTA---ACTCCAAGCCATGAGTATAAGATTAAGGCAGTT-ACTTTATTTTGAACAAGGAAGTGGCATAAGCAACTCAGTGTGTGCCCCTTAGGGTGGGAGCTCTTCCCCC-TACCACTCCCCACC--CCAAGGCATCATTTT---------GGAGAAA--------AAAGTGTCTTCTATCTGGCTAGCTGTGTTATCT----AGGATTGCAC s panTro5.chr2A 3570264 286 + 111504155 ------------------------------CTCATATATAAA--TTACTTATCTATA---AGAACAATTATAGAAGGAATCTAAAT----------------------GGGGCAATTTTAACAAACCAGGC-AAAATATCATA--TATACCTGAATATA-AGGTA---ACTCCAAGCCATGAGCATAAGATTAAGGCAGTT-ACTTTATTTTGAAGAAGGAAGTGGCATAAGCAACTCAGTGTGTGCCCCTTAGGGTGGGAGCTCTTCCCCC-TACCACTCCCCACC--CCAAGGCATCATTTT---------GGAGAAA--------AAAGTGTCTTCTATCTGGCTGGCTGTATTATCT----AGGATTGCAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3430565 286 + 114371477 ------------------------------CTCATATATAAA--TTACTTATCTATA---AGAACAATTATAGAAGGAATCTAAAT----------------------GGGGCAATTTTAACAAACCAGGC-AAAATATCATA--TATACCTGAATATA-AGGTA---ACTCCAAGCCATGAGCATAAGATTAAGGCAGTT-ACTTTATTTTGAAGAAGGAAGTGGCATAAGCAACTCAGTGTGTGCCCCTTAGGGTGGGAGCTCTTCCCCC-TACCACTCCCCACC--CCAAGGCATCATTTT---------GGAGAAA--------AAAGTGTCTTCTATCTGGCTGGCTGTGTTATCT----AGGATTGCAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 309044 286 + 637652 ------------------------------CTCATATATAAA--TTACTTATCTATA---AGAACAATTATAGAAGGAATCTAAAT----------------------GGGGCAATTTTAACAAACCAGGC-AAAATATCATA--TATACCTGAATATA-AGGTA---ACTCCAAGCCATGAGTATAAGATTAAGGCAGTT-ACTTTATTTTGAAGAAGGAAGTGGCATAAGCAACTCAGTGTGTGCCCCTTAGGGTGGGAGCTCTTCCCCC-TACCACTCCCCACC--CCAAGGCATCATTTT---------GGAGAAA--------AAAGTGTCTTCTATCTGGCTGGCTGTGTTATCT----AGGATTGCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3104540 280 + 81552678 ------------------------------CTCATATATAAA--TTACTTATCTATA---AGAACAATTATAGAAAGAATCTAAAT----------------------GGGATGATTTTAACAAACCAGGC-AAAATATCATA--TATACCTGAATATG-AGGTA---ACTCCAAGCCATGAGCATAAGATTAAGGCAGTT-ACTTTATTTTGAACAAGGAAGTGGCATAAGCAACTCAGTGTGTGCCCCTTAAGGTGGGAGCTCTTC-------CCACTCCCCATC--CCAAGGCATAATTTT---------GGAGAAA--------AAAGTGTCTTCTATCTGGCTAGCTATGTTATCT----ATGATTGCAC i nomLeu3.chr19 C 0 I 322 s rheMac8.chr13 3368646 286 + 108979918 ------------------------------CTCATATATAAA--TTATTGATATATA---AGAATAATTATATAAAGAATCTAAAT----------------------GAGGCGATTTTAACAAAGTAGGC-AAAATATCATA--CATACCTGAATATA-AGGTA---ACTCCAAGCCATGAGCATAAGATTAAGGCATTC-ACTTTATTTTGAACAAGGAAGTGGCATAAGCAACTCAGTGTGTGCCCCTTAAGGTGCGAGCTCTTCCCCCATACCACTCCCCACC--CCAAGGCATAATTTT--------GGGAGAAA--------AAAGCGTCTTCTATCTGGCGAGC--TGTTATCT----GTGATTGCAC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5080776 286 - 111193037 ------------------------------CTCATATATAAA--TTATTGATATATA---AGAATAATTATATAAAGAATCTAAAT----------------------GAGGCGATTTTAACAAAGTAGGC-AAAATATCATA--CATACCTGAATATA-AGGTA---ACTCCAAGCCATGAGCATAAGATTAAGGCATTC-ACTTTATTTTGAACAAGGAAGTGGCATAAGCAACTCAGTGTGTGCCCCTTAAGGTGCGAGCTCTTCCCCCATACCACTCCCCACC--CCAAGGCATAATTTT--------GGGAGAAA--------AAAGCGTCTTCTATCTGGCGAGC--TGTTATCT----ATGATTGCAC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3472076 286 + 3644372 ------------------------------CTCATATATAAA--TTATTGATATATA---AGAATAATTATATAAAGAATCTAAAT----------------------GAGGCGATTTTAACAAAGTAGGC-AAAATATCATA--CATACCTGAATATA-AGGTA---ACTCCAAGCCATGAGCATAAGATTAAGGCATTC-ACTTTATTTTGAACAAGGAAGTGGCATAAGCAACTCAGTGTGTACCCCTTAAGGTGCGAGCTCTTCCCCCATACCACTCCCCACC--CCAAGGCATAATTTT--------GGGAGAAA--------AAAGCGTCTTCTATCTGGCGAGC--TGTTATCT----ATGATTGCAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3429013 286 - 10304083 ------------------------------CTCATATATAAA--TTATTGATATATA---AGAATAATTATATAAAGAATCTAAAT----------------------GGGGCGATTTTAACAAACTAGGC-AAAATATCATA--CATACCTGAATATA-AGGTA---ACTCCAAGCCATGAGCATAAGATTAAGGCATTC-ACTTTATTTTGAACAAGGAAGTGGCATAAGCAACTCAGTGTGTGCCCCTTAAGGTGCGAGCTCTTCCCCCATACCACTCCCCACC--CCAAGGCATAATTTT--------GGGAGAAA--------AAAGCGTCTTCTCTCTGGCTAGC--TGTTATCT----GTGATTGCAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3529528 288 - 107702431 ------------------------------CCCATATATAAA--TTATTGATATATA---AGGACAATTATATAAAGAATCTAAAT----------------------GGGGCAATTTTAACAAACTAGGC-AAAATATCATA--CATACCTGAATATA-AGGTA---ACTCCAGGCCATGAGCATAAGATTAAGGCATTC-ACTTTATTTTGAACAAGAAAGTGGCATAAGCAACTCAGTGTGTGCCCCTTAAGGTGCGAGGTCTTCCCCCATACCACTCCCCACC--CCAAGGCATAATTTT--------GGGAGAGA--------AAAGTGTCTTCTATCTGGCTAGCTGTGTTATCT----ATGATTGCAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1060643 286 + 1565135 ------------------------------CTCATATATAAA--TTATTGATATATA---AGGATAATTATATAAAGAATCTAAAT----------------------GGGGCGATTTTAACAAACAAGGC-AAAATATCATA--CATACCTGAATATA-AGGTA---ACTCCAAGCCATGAGCATAAGATTAAGGCATTC-ACTTTATTTTGAACAAGGAAGTGGCATAAGCAACTCAGTGTGTGCCCCTTAAGGTGCGAGCTCTTCCCCCATACCACTCCCCACC--CCAAGGCACAATTTT--------GGGAGAAA--------AAAGCGTCTTCTCTCTGGCTAGC--TGTTATCT----ATGATTGCAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3422983 290 - 13651311 ------------------------------CTCATATATAAA--TTATTGATATATA---AGAACAATTATATAAAGAATCTAAAT----------------------GGGGCGATTTTAACAAACTAGGC-AAAATATCATA--CATACCTGAATATA-AGGTA---ACTCCAAGCCATGAGTATAAGATTAAGGCATTC-ACTTTATTTTGAACAAGGAAGTGGCATAAGCAACTCAGTGTGTGCCCCTTAAGGTCCGAGCTCTTCCCCCATACCACTCCCCACCCTCCAAGGCATAATTTT--------GGGAGAAA--------AAAGTGTCTTCTATCTGGCTAGCTGTGTTATCT----ATGATTGCAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3508509 285 - 108792865 ------------------------------CTCATATGTAAA--TTACTTATATACA---AGAACAATTATAGAAAGAATC--AAT----------------------GGGGCAATTTTAACAAACCGGGC-AAAGTACCATA--TATACTTGAATATA-AGGTA---ACTCCAAGCCATGAGCATAAGATGAAGGCCATTAACTTTATTTTGAACAAGGAAGTGGCGTAAGCAACTCAGTCTGTGCCCTTTAAGATGGGAGCCCTTCTCCCACAGCACGCCCCACC--CCAAGGCAGAATTTT-------GGGGAGGGG--------AAAGAGCCT--TCTCTGGCTAGCC-TGCTATCG----ATGATCACAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3155419 287 - 7082604 ------------------------------CTCATATGTAAA--TTACTTACATACA---AGAACAATTATAGAAAGAATCTAAAT----------------------GGGGCAATTTTAACAAACCAGGC-AAAGTATCATA--TATTCTTGAATATA-AGGTA---ACTCCAAGCCATGAGCATAATATTAAGGCAGCTAACTTTATTTTGAACAAGGAAGTGGTATAAGCAACTCAGTCTGTGCCCTTTAAGATGGGAGCCCTTCCCCC-CAGCACAACCTGCC--CCAAGGCAGAATTGT--------GGGAGAAA--------AAAGTGTCTTGTCTCTGGCTGGCT-TGCTATCG----ATGATCACAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 641558 285 + 5243153 ------------------------------CTCATATGTAAA--TCACTTATATACA---AGAACAATTATAGAAAGAATCTAAAT----------------------GGGGCAATTTTAACAAAACAGGC-AAAGTATCATG--TATACTTGAATATA-AGGTG-----TCCAAGCCATGAGCATAAGATTAAGGCAGTTAACTTTATTTTGAACAAGGAAGTGGCGTAAGCAACTCAGTCTGTGCCCTTTAAGATGGGAGCCCTTCCCCC-CAGCATGCCCCGCC--CCAAGGCAGAATTTT--------GGGAGGAA--------AAAGTGTCTCCTCTCTGGCTAGCT-TGCTATCG----ATGATCACAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3383988 288 + 7587287 ------------------------------CTCATCTGTAAA--TCACTTATATACA---AGAACAATTATAGAAAGAATCTAAAT----------------------GGAGCAATTTTAACAAACCAGGC-AAAGTATCATA--TATACTTGAATATA-AGGTA---ACTCCAAGCCATGAGCACAAGATTAAGGCAGTTAACTTTATTTTGAACAAGGAAGTGGCGTAAGCAACTCAGTCTGTGCCCTTTAAGATGGGAGCCCTTCCCCCCCAGCACGCCCCGCC--CCAAGGCAGAATTTT--------GGGAGAAA--------AAAGTGTCTCCTCTCTGGCTAGCT-TGCTATCC----ATGATCACAC i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2586218 268 + 5252280 ------------------------------AACATATATAAA--TTAATTATGAACATACACCACAATCTTACAGAGACTCTAAAG----------------------GGGGTGGTTT----GGACCACGC-AAAATGCCACA--AACACCTAAACATA-AGGCACAGGCTCCA---------------ATCAAGGTGGGT-CCTTTATTCTG-ACAAGGAAGTGGC--AAGCAACTCAGAGTGTGC----TGTCACGTGCGCTCTTCCCAC--ACCTTTCTCCACC--GCAAGGTGTAGTTTT--------GGGAGGAG--------AAAGTGTCT--TGTCTGGTTAGCTGGGTTATCTATCCATTATGACAC i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91447369 231 - 120129022 ------------------------------CTGATATAGAAA--TTAACTATGTACAT--ATAAAAATCACATAAGGAATCTAAAT----------------------GGGA-GGTTTTAATGAACCAAGT-AAAATACTGTAGGTACACATGAATGTACATACA---GCTT--AGCTGTGAGCATACAATTAAGGAA----ACTTAGTTTTAAGAAAGAA--------CAACAACCC--------------------------------------CACTTCCCCAC--TCAACA-ATCAGCAA--------AGGAGAAA--------AACGT------CATCTGGTTAGTTGTGCTGGTT----ATAACTGC-- i mm10.chr12 I 3216 C 0 s dasNov3.JH580157 678942 350 + 2232271 gttatatatacatttatattatatatGTTACACATACATAAAAGTGatatatttatt---agataaattatataaattatgttaatatCATAACAAAGACACTAAACAAGAGTGATTTTAACAAACCAGGCAAAAATACCCTA--TATACCTGAATATT-AGGTA---ACTGCAAGCCATAAGCACGCAATTAAGACAGTT-ATTTT-------ACAAGAAAGTGGTATAAGCTCCTAAGAGTATAGCCATAATAGGAGAGGCTCTTCCCTA-TTCTACTGTCTAAC--CCAA-GTATAAACTGGGGGGCTGGGGAGGGAGGGGCTGGGACGTATCTTTTAGTTGATTAGTTATATTATCT----ATTATTATAC i dasNov3.JH580157 C 0 C 0 a score=2991759.000000 s hg38.chr2_KI270769v1_alt 108087 306 + 120616 ---CTTCTTACACGGCAGGCG---CGGC------------------------------ATCACGTCCAGAT-GGGCAT-CTAAGGAACTGCATTTCGGGAGATGAAACTTTCATTTGGGACTCAACTGAATGCATGAACTAACACA-----GGGC-CATGGACCCACCAGTCTTGATT-GAGTTACAGAAAATGAAGGTG--------ACTC-TTTACA---------CTTCC---------AAGTTG-------CT----------------TTCTAGATCCTTTCATTACAAAATATTCTGATCAAATAATCTTACAAAGGAAAGATAATCTAGCCTCAAGGCTATCCTCTAAAAGCAAAGAGAAAGTGATTGATTTTCTGCTCAGTC--ATTACATTGGG--------------------------------------------------------------------------------------------------- s panTro5.chr2A 3570550 303 + 111504155 ---CTTCTTACACGGCAGGC------TC------------------------------ATCACGTCCAGAT-GAGCAT-CTAAGGAACTGCATTTGGGGAGATGAAACTTTCATCTGGGACTCAACTGAATGCATGAACTAACACG-----GGGC-CATGGACCCACCAGTCTTGATT-GAGTTACAGAAAATGAAGGTG--------ACTC-TTTACA---------CTTCC---------AAGTTG-------CT----------------TTCTAGATCCTTTCATTACAAAATATTCTGATCAAATAATCTTACAAAGGAAAGATAACCTAGCCTCAAGGCTATCCTCTAAAAGCAAAGAGAAAGTGATTGATTTTCTGCTCAGTC--ATTACGCTGGG--------------------------------------------------------------------------------------------------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3430851 303 + 114371477 ---CTTCTTACACGGCAGGC------TC------------------------------ATCACGTCCAGAT-GAGCAT-CTAAGGAACTGCATTTGGGGAGATGAAACTTTCATCTGGGACTCAACTGAATGCATGAACTAACACG-----GGGC-CATGGACCCACCAGTCTTGATT-GAGTTACAGAAAATGAAGGTG--------ACTC-TTTACA---------CTTCC---------AAGTTG-------CT----------------TTCTAGATCCTTTCATTACAAAATATTCTGATCAAATAATCTTACAAAGGAAAGATAACCTAGCCTCAAGGCTATCCTCTAAAAGCAAAGAGAAAGTGATTGATTTTCTGCTCAGTC--ATTACGCTGGG--------------------------------------------------------------------------------------------------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 309330 306 + 637652 ---CTTCTTACACGGCAGGCA---TGGT------------------------------ATCACGTCCAGAT-GAGCAT-CTAAGGAACTGCATTTGGGGAGATGAAACTTTCATGTGGGACTCAACTGAATGCATGAACTAACACA-----GGGC-CATGGACCCACCAGTCTTGATT-GAGTTACAGAAAATGAAGGTG--------ACTC-TTTACA---------CTTCC---------AAGTTG-------CT----------------TTCTAGATCCTTTCATTACAAAATATTCTGATCAAATAATCTTACAAAGGAAAGATAACCTAGCCTCAAGTCTATCCTCTAAAAGCAAAGAGAAAGTGATTGATTTTCTGCTCAGTC--ATTACACTGGG--------------------------------------------------------------------------------------------------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3105142 295 + 81552678 ---CTTCTTACACGGCAGGCA---CGGC------------------------------ATCACGTCCAGAC-GAGCAT-CTAAGGAACTGCATTTGGGGAGATGAAACTTCCATCTAGGTCTGAGCTGAATGCATGAACTAACGCA-----GGGC-CACGGACCCACTCGCCTT-ATC-AAGTTACAGAAAATGAAGGTG--------ACTC-TTTACA---------CTTCC---------AGGTTG-------CT----------------TTCTAGATCCTTTCAATACAAAATATTCTGATCAAATAATCTTACAAAGGAAAGATAACCGAGCCTCGAGC----------AAAGCAAAGAGAAAATGATTGATTTGCTGCGCAGTC--ATCATATTGGG--------------------------------------------------------------------------------------------------- i nomLeu3.chr19 I 322 C 0 s rheMac8.chr13 3368932 306 + 108979918 ---CTTCTTACACGGCAGGTA---CGGT------------------------------ATCACGTCCAGAC-GAGCAT-CTGTGGAGCTGCATTTCGTGAGGTGAAACTTTCATTTAGGTCTGAACTGAATGCATGAACACACACA-----GGGC-CACGGACCCACTAGTCTTGATT-GAGTTACAGAAAATGAAGGTG--------ACTC-TTTACA---------CTTCC---------AAGTTG-------CT----------------TTCTAGATCCTTTCATTACAAAAGATTCTGGTCAAATAATCTTACAAAGGAGAGATAACCTAGCCTCAAGTCTATCCTCTAAAAGCAAAGAGAAAATGGTGGATTTTCTGCTCAGTC--ATCATACTGGG--------------------------------------------------------------------------------------------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5081062 306 - 111193037 ---CTTCTTACACGGCAGGTA---CGGT------------------------------GTCACGTCCAGAC-GAGCAT-CTATGGAGCTGCATTTCGTGAGATGAAACTTTCATTTAGGTCTGAACTGAACGCATGAACACACACA-----GGGC-CACGGACCCACTAGTCTTGACT-GAGTTACAGAAAATGAAGGTG--------ACTC-TTTACA---------CTTCC---------AAGTTG-------CT----------------TTCTAGATCCTTTCATTACAAAAGATTCTGGTCAAATAATCTGACAAAGGAGAGATAACCTAGCCTCAAGTCTATCCTCTAAAAGCAAAGAGAAAATGGTGGATTTTCTGCTCAGTC--ATCATACTGGG--------------------------------------------------------------------------------------------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3472362 306 + 3644372 ---CTTCTTACACGGCAGGTA---CGGT------------------------------ATCACGTCCAGAC-AAGCAT-CTATGGAGCTGCATTTCGTGAGATGAAACTTTCATTTAGGTCTGAACTGAACGCATGAACACACACA-----GGGC-CACGGACCCACTAGCCTTGACT-GAGTTACAGAAAATGAAGGTG--------ACTC-TTTACA---------CTTCC---------AAGTTG-------CT----------------TTCTAGATCCTTTCATTACAAAAGATTCTGGTCAAATAATCTTACAAAGGAGAGATAACCTAGCCTCAAGTCTATCCTCTAAAAGCAAAGAGAAAATGGTGGATTTTCTGCTCAGTC--ATCATACTGGG--------------------------------------------------------------------------------------------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3429299 306 - 10304083 ---CTTCTTACACGGCAGGTA---CGGT------------------------------ATCACGTCCAGAC-GAGCAT-CTGTGGAGCTGCATTTCGGGAGATGAAACTTTCATTTGGGTCTGAACTGAATGCATGAACACACACA-----GGGC-CACGGACCCACTAGTCTTGATT-GAGTTACAGAAAATGAAGGTG--------ACTC-TTTACA---------CTTCC---------AAGTTG-------CT----------------TTCTAGATCCTTTCATTACAAAAGATTCTGGTCAAATAATCTTACAAAGGAGAGATAACCTAGCCTCAAGTCTATCCTCTAAAAGCAAAGAGAAAATGGTGGATTTTCTGCTCAGTC--ATCATACTGGG--------------------------------------------------------------------------------------------------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3529816 305 - 107702431 ---CTTCTT-CACGGCAGGTA---CGGT------------------------------ATCACGTCCAGAC-GAGCAT-CTATGGAGCTGCATTTCGGGAGATGAAACTTTCATTTGGGTCTGAACTGAATGCAGGAACACACACA-----GGGC-CACGGACCCACTAGTCTTGATT-GAGTTACAGAAAATGAAGGTG--------ACTC-TTTACA---------CTTCC---------AAGTTG-------CT----------------TTCTAGATCCTTTCATTACAAAAGATTCTGGTCAAATAATCTTACAAAGGAAAGATAACCTAGCCTCAAGTCTATCCTCTAAAAGCAAAGAGAAAATGGTGGATTTTCTGCTCAGTC--ATCATACTGGG--------------------------------------------------------------------------------------------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1060929 306 + 1565135 ---CTTCTTACACGGCAGGTA---CGGT------------------------------ATCACGTCCAGAC-GAGCAT-CTATGGAGCTGCATTTCGGGAGATGAAACTTTCATTTGGGTCTGAACTGAATGCATGAACACACACA-----GGGC-CACGGACCCACTAGTCTTGATT-GAGTTACAGAAAATGAAGGTG--------ACTC-TTTACA---------CTTCC---------AAGTTG-------CT----------------TTCTAGATCCTTTCATTACAAAAGATTCTGGTCAAATAATCTTACAAAGGAGAGATAACCTAGCCTCAAGTCTATCCTCTAAAAGCAAAGAGAAAATGGTGGATTTTCTGCTCAGTC--ATCATACTGGG--------------------------------------------------------------------------------------------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3423273 305 - 13651311 ---CTTCTTACACGGCAGGCA---CCGT------------------------------ATCACGTCCAGAC-GAGCAT-CTACGGAGCTGCATTTCGGGAGATGAAACTTTCATTTGGGTCTGAACTGAATGCATGAACTAACACA------GGC-CACGGACCCACTAGTCTTGATT-GAGTTACAGAAAATGAAGGTG--------ACTC-TTTACA---------CTTCC---------AAGTTG-------CT----------------TTCTAGATCCTTTCATTACAAAAGATTCCGATCAAATAATCTTACAAAGGAAAGATAACCCGGCCTCAAGTCTATCCTCTAAAAGCAAAGAGAAAATGGTGGATTTTCTGCTGAGTC--ATCATACTGGA--------------------------------------------------------------------------------------------------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3508794 300 - 108792865 ---CTTCTTA-ACGGCAGCCA---CAGC------------------------------ATGACGTGCAGAC-GAGCAT-CTAAGGAAAAGCATTTTGGGAGATGACACTTTGATTTGGGTCCGAGATGAATGCATGAACTGATGCA-----GGGC-CGTGGACCCACTAGTCTCGATC-GAGTTAGGGAAAATGGAGGTG--------ACCCGCTTACA---------CTTCC---------AAGCTG-------CT----------------TTCTAGATCCTTTCATTACAAAATATTCTGATCAAATCAACTTACAAAGGAAG------CCAGCCTCGAGTCTATCCTATAAAAGCAAAGAGAAAAGGACTGATTTTCTGCTCAGTC--ACCGAACTGAG--------------------------------------------------------------------------------------------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3155706 301 - 7082604 ---CTTCTTACGTGGCAGCCA---CAGC------------------------------ATCACCTCCAGAC-GAGCAT-CTAAGGAAAAGCATTTTGGGAGATGACACTCTCATTTGGGTCTGAGATGAATGCATGAACTCACACA-----GGGC-CACGGACCCACTAGTCTCGATCTGAGTTAGAGAAAATGAAGGTG--------ACTTGCTTACA---------CTTCC---------AAGCTG-------CT----------------TTCTAGATCCTTTCATCACAAAATATTCTGATCAAATCAATCTACAAAGGAAA------CTAGCGTTGACTCTA-CCTATAAATGCAAAGAGAAAACGACTGATTTTCTGCTCAGTC--ACTGTGCTGAG--------------------------------------------------------------------------------------------------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 641843 299 + 5243153 ---CTTCTTACATGGCAGCCA---CAGC------------------------------ATCACATCCAGAG-GAGCAT-CTAAGGAAGAGCATTTTGGGAGATGACACTTTCATTTGGGTCTGAGATGAATGCATGAACTAA--CA-----GGAC-CACGGACCCACTAGTCTCCCTC-GAGTTAGAGAAAATGAAGGTG--------ACTTGCTTACA---------CTTCC---------AAGCTG-------CT----------------TTCTAGATCCTTTCATCACAAAATATTCTGATCAAATCAACCTACAAAGGAAA------CTGGCGTCGAGCCTACCCTATAAAGGCAAAGAGAAAATGATTGATTTTCTGCTCAGTC--ACCGTTCTGAG--------------------------------------------------------------------------------------------------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3384276 300 + 7587287 ---CTTCTTACATGGCAGCCG---CAGC------------------------------ATCATGTCCAGAG-GAGCAT-CTATGGAAAAGCACTTCGGGAGATGACACT-TCATTTGGGTCTGAGATGAATGCATGAACGAACACA-----GGGC-CATGGACCCACTAGTCTCGATC-GAGTTAGAGAAAATGAAGGTG--------ACTTGCTTACA---------CTTCC---------AAGCTG-------CT----------------TTCTAGATCCTTTCATCACAAAATATTCTGATCAAATCAACCTACAGAGGAAG------CTAGCCTCGAGTCTACCCTATAAAAGCAAAGAGAAAATGACTGATTTTCTGCTCAGTC--ACCGTACTGAG--------------------------------------------------------------------------------------------------- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2586486 328 + 5252280 ---CTGCATACAAAGGAAGCATGGCGGC------------------------------ATCACACCCAGAA-CAGAGT-CTGCGGAGCTGAGTGTCGGGAGGTGGAATGCTCACCTGCATTTAGAC-GAAAGC-TTCACTCGCACAATGTGGGGC-TACTGGACTGCGAGTCTCTATC-AACTAAGAAAAAATACAGGGG--------CCTG-TTCACA---------TTTCC---------AAGATG-------CTCCTATGTAAAAATCAGTTCTAGCTCCTTTCATTAAACAATATTCTGATCAAATAATCTTGTACAGGAAAGGTAATTTAACCTCAAGTCTGCCATACAAAAGT-TAGAGAAAATGATTTATTTTCCA-TCAGTTAAACCATGTTCGG--------------------------------------------------------------------------------------------------- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91447600 298 - 120129022 ---CCTCTTGCA--GGAGGCA---TAGC------------------------------TTCACACC--AAC-AGACAC-CTAAAGA-------TCTGGGAGATGAAGATT-------GGCCATGCATGAATGCACATACCAATCCA-----GGGCTCCTATACCTCTAAGTCTTGA---CAGTTAGGGAAAATTAAGGTC--------ACTTTTTCACATTTTTGTGGCTTCC---------ATGTAAAACTCACTT----------------TTAGAGAGGCTTTCATT-TAAAAGACACTGATCTCACAATCCTAGCAAAGAGAGCTAGTCTAGCCTCAAGTTCA-AATACAAAAGCAGA---AAAGTGAGCAACTTTCCATTCGGTT--ACCACAGC-AG--------------------------------------------------------------------------------------------------- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 679292 452 + 2232271 CTTCTTCTTATAAGACAGGCA---TGGCAGTGACTGATATCTGGTTTAAAATCTAAGAATCATATCCAGATAGAATATGCTACAGAGTTACATTTTAAGAGATTA-ACTTTCATTTGGTTTAAAGTTGATTGCTTATACTAACACA-----TGAC-TACAAAACCACTATTTTTAATT-TAGTTAAGGAAAATGAATGTGATATATCCACTTGTTTACA---------GTTCCTTCCATGTAAAAATG-------TT----------------GTAT---TATTTTCATTA-AAAATATTCTTATT-AATAATCTTACAAAGGAAAGACAACCTAGCCTCAAGTCTACAATATAAAAGCAAAAAGAAAACGACTGACTTGCTGCTCAATT--ATCATGTTTAAGACCATtacaaacatgatggaatatcatacacctataagaagaaatgaagttgtaaagcacatgacaacatgattgaacctggaggacattacattgag i dasNov3.JH580157 C 0 I 199 a score=2759662.000000 s hg38.chr2_KI270769v1_alt 108393 215 + 120616 GACCTTTACGAGGCACGTGTTAGTTCCCAGGCAGCACTGCTAGGCGGTCTGTGCCAGAAATTTCACGTACTGCCCGCGGGCTTCAAAATGGTCAGCGGGCCGGTTGTACGCTGTCCACACCGGTTCTCCCACAAACAGCCGCATGGCCTTCGTGTAGTTCTGGAAAACAGACAAACACACCCAGCATCTCATTAAACCAGCCGGCCTTCTACTTA s panTro5.chr2A 3570853 215 + 111504155 GACCTTTACGAGGCACGTGTTAGTTCCCAGGCAGCACTGCTAGGCGGTCTGTGCCAGAAATTTCACGTACTGCCCGCGGGCTTCAAAATGGTCAGCGGGCCGGTTGTACGCTGTCCACACCGGTTCTCCCACAAACAGCCGCATGGCCTTCGTGTAGTTCTGGAAAACAGACAAACACACCCAGCATCTCATTAAACCAGCCGGCCTTCTACTTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3431154 215 + 114371477 GACCTTTACGAGGCACGTGTTAGTTCCCAGGCAGCACTGCTAGGCGGTCTGTGCCAGAAATTTCACGTACTGCCCGCGGGCTTCAAAATGGTCAGCGGGCCGGTTGTACGCTGTCCACACCGGTTCTCCCACAAACAGCCGCATGGCCTTCGTGTAGTTCTGGAAAACAGACAAACACACCCAGCATCTCATTAAACCAGCCGGCCTTCTACTTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 309636 215 + 637652 GACCTTTACGAGGCACGTGTTAGTTCCCAGGCAGCACTGCTAGGCGGTCTGTGCCAGAAATTTCACGTACTGCCCGCGGGCTTCAAAATGGTCAGCGGGCCGGTTGTACGCTGTCCACACCGGTTCTCCCACAAACAGCCGCATGGCCTTCGTGTAGTTCTGGAAAACAGGCAAACACAGCCAGCATCTCATTAAACCAGCCGGCCTTCTACTTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3105437 194 + 81552678 GACCTTTATGAG---------------------GCACTGCTAGGCCGTCTCTGCCAGAAATTTCATGTACTGCCCGCGGGCTTCGAAATGGTCAGCGGGCCGGTTGTACGCTGTCCACACCGGTTCTCCCACAAACAGCCGCATGGCCTTCGTGTAGTTCTGGAAAACAGACAAACACACCCAGCATCTCATTAAACCAGCCGGCCTTCTACTTA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3369238 215 + 108979918 GACCTTCACGAGGCACGTGTTAGTTCCCAGGCAGCACTGCTAGGCTGTCTGTGCCAGAAATTTCATGTACTGCCCGCGGGCTTCGAAATGGTCAGCGGGCCGGTTGTACGCTGTCCACACCGGTTCTCCCACAAACAGCCGCATGGCCTTCGCGTAGTTCTGGAAAACAGACAAACATGCCCAGCATCTCATTAAACCAGCCGGCCTTCTACTTA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5081368 215 - 111193037 GACCTTCACGAGGCACGTGTTAGTTCCCAGGCAGCACTGCTAGGCTGTCTGTGCCAGAAATTTCATGTACTGCCCGCGGGCTTCGAAATGGTCAGCGGGCCGGTTGTACGCTGTCCACACCGGTTCTCCCACAAACAGCCGCATGGCCTTCGCGTAGTTCTGGAAAACAGACAAACATGCCCAGCATCTCATTAAACCAGCCGGCCTTCTACTTA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3472668 215 + 3644372 GACCTTCACGAGGCACGTGTTAGTTCCCAGGCAGCACTGCTAGGCTGTCTGTGCCAGAAATTTCATGTACTGCCCGCGGGCTTCGAAATGGTCAGCGGGCCGGTTGTACGCTGTCCACACCGGTTCTCCCACAAACAGCCGCATGGCCTTCGCGTAGTTCTGGAAAACAGACAAACGTGCCCAGCATCTCATTAAACCAGCCGGCCTTCTACTTA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3429605 215 - 10304083 GACCTTCACGAGGCACGTGTTAGTTCCCAGGCAGCACTGCTAGGCTGTCTGTGCCAGAAATTTCATGTACTGCCCGCGGGCTTCGAAATGGTCAGCAGGCCGGTTGTACGCTGTCCACACCGGTTCTCCCACAAACAGCCGCATGGCCTTCGCGTAGTTCTGGAAAACAGACAAGCACGCCCAGCATCTCATTAAACCAGCCGGCCTTCTACTTA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3530121 215 - 107702431 GACCTTCATGAGGCACGTGTTAGTTCCCAGGCAGCACTGCTAGGCTGTCTGTGCCAGAAATTTCATGTACTGCCCGCGGGCTTCGAAATGGTCAGCGGGCCGGTTGTATGCTGTCCACACCGGTTCTCCCACAAACAGCCGCATGGCCTTTGCGTAGTTCTGGAAAACAGACAAACATGCCCAGCATCTCATTAAACCAGCCGGCCTTCTACTTA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1061235 215 + 1565135 GACCTTCACGAGGCACGTGTTAGTTCCCAGGCAGCACTGCTAGGCTGTCTGTGCCAGAAATTTCATGTACTGCCCACGGGCTTCGAAATGGTCAGCAGGCCGGTTGTACGCTGTCCACACCGGTTCTCCCACAAACAGCCGCATGGCCTTCGCGTAGTTCTGGAAAACAGACAAACATGCCCAGCATCTCATTAAACCAGCCGGCCTTCTACTTA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3423578 215 - 13651311 GACCTTCACGAGGCACGTGTTAGCTCCCAGGCAGCACTGCTAGGCTGTCTGTGCCAGAAATTTCATATACTGCCCGCGGGCTTCGAAATGGTCAGCGGGCCGGTTGTACGCTGTCCACACCGGTTCTCCCACAAACAGCCGCATGGCCTTCGCATAGTTCTGGAAAACAGACAAACACGCCCAGCATCTCATTAAACCAGCCGGCCTTCTACTTA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3509094 215 - 108792865 GACCTTTACGGGGGGCGTGTTAGCTCCCAGGGAGCCCCGCTAGGCTGTCTGCGCCAGAAACTTCACGTACTGCCCCCGGGCTTCGAAGTGGTCAGCGGGCCGGTTGTAGGCCGTCCACACCGGCTCTCCCACGAACAGCCGCATGGCCTTCGCGTAGTTCTGCAAGACAGAGCGACACACCCAGCCCCTCGTTAAACCAGCCGGCCTTCCGCTTA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3156007 215 - 7082604 AACCTTCACGAGGTGCGTGGCAGCTCCCAGGGAGCACTGCTAGGCTGTCTGTGCCAGAAACTTCACGTACTGTCCCCGGGCTTCGAAATGGTCCGCGGGCCGGTTGTACGCCGTCCACACCGGCTCTCCCACGAACAGCCGCATGGCCTTTGCGTAGTTCTGGAAGACAGACCAACACACCCAGCCCCTCGTTAAACCAGCCGGCCTTCTACTGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 642142 215 + 5243153 GACCTTTACGAGGTGCGTGTCAGCTCCCAGGGAGCGCTGCTAGGCTGTCTGCGCCAGAAACTTCACGTACTGCCCCCGGGCTTCGAAATGGTCCGCAGGCCGGTTGTACGCCGTCCACACCGGCTCTCCCACGAACAGCCGCATGGCCTTCGCGTAGTTCTGAAAGACAGACCAACACAGCCAGCCCCTCCTTAAACCAGCCGGCCTTCTACTTA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3384576 214 + 7587287 GACCTTTCCGAGGTGCGTGTTAGCTCCCAGGGAGCACTGCTAGGCTGTCTGTGCCAGAAACTTCACGTACTGCCCGCGGGCTTCGAAATGGTCAGCGGGCCGGTTGTACGCCGTCCACACCGGCTCTCCCACGAACAGCCGCATGGCCTTCGCGTAGTTCTGGAAGACAGACCAACACACGCAGCCCCTCGTTAAACCAGCCGG-CTTCTGCTTA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2586814 214 + 5252280 GACCTTCACAAGGCACATGTCAGTTTCCAGGGAGCAACACTATGCCGTCTGTGTCAGAAATTTCACGTACTGTTCCCGGGCATCGAAATGGTCAGCTGGCCGGTTGTACGCCGTCCACACTGGGTCTCCCACAAACAGCCTCATGGCCTTCACGTAGTTCTAGAAAACAGACAAACACA-CCAGCATTTCATTAAACCTGTTGCCTTTCCACTTA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91447898 200 - 120129022 GAGATTCACACAGTGCAGTTTTCTCTTTGAGGAGCACTGCTATGCTGTTCCTTCCAAAAAACTCATGTACTGTACACGGGCATCAAAATGGTCAGCTGGCCGGTTGTATGGTGTCCACACAGGTTCTCCAACAAACAGCCGCATGGCCTTCACGTAATTCTAGAAAACAA--------GCCCCACATCTCATTGAACA-------CTTCCACTCA i mm10.chr12 C 0 I 44 s dasNov3.JH580157 679943 210 + 2232271 GACCATTATAAGTTGTGTATTATTTTCCAGAGAGCCTCACTATGCTGTCTGCGTCAAAAATTTCACATACTGTCTTCGAGCCTCAAAATGGTCAGATGGTCGGTTGTATGCTGTCCACACTGGTTCTCCAACAAAAAGCCGCATTGCCTTTACATAGTTCTAGAAAACAAACAAACAAGTCCAGCAACTTTTTAAACCAGAGGACTCTTT----- i dasNov3.JH580157 I 199 C 0 a score=1292039.000000 s hg38.chr2_KI270769v1_alt 108608 123 + 120616 G---TATTTATTAACATATCAACTTGTTAACATTAATTGCTATAAACACTTTACTTGCTATTTTTATTCTGCGTCTTTAACAAT-TT-AGGCCACATTTTATTCGTGGAAGGAAAATTT-GTATCAGGT s panTro5.chr2A 3571068 126 + 111504155 CTTTTATTTATTAACATATCAACTTATTAACATTAATTGCTATAAACACTTTACTTGCTATTTTTATTCTGCGTCTTTAACAAT-TT-AGGCCACATTTTACTCGTGGAAGGAAAATTT-GTATCAGGT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3431369 126 + 114371477 CTTTTATTTATTAACATATCAACTTATTAACATTAATTGCTATAAACACTTTACTTGCTATTTTTATTCTGCGTCTTTAACAAT-TT-AGGCCACATTTTACTCGTGGAAGGAAAATTT-GTATCAGGT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 309851 124 + 637652 CTTTTATTTATTAACATATCAACTTATTAACATTAATTGCTATAAACACTTTAC-TGCTA-TTTTATTCTGCGTCTTTAACAAT-TT-AGGCCACATTTTATTCGTGGAAGGAAAATTT-GTATCAGGT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3105631 126 + 81552678 CTTTTATTTATTAACATATCAACTTATTAACATTAATTGCTATAAACACTTTTCTTGCTATTTTTATTATGCGTCTTTAACAAT-TT-AGGCCACATTTTATTCGTGGAAGGACGATTT-GTATCAGAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3369453 126 + 108979918 CTTTTATTTATTAACATATCAACTTGTTAACATTAATTGCTATAAACACTTCCCTTGCTATTTTTATTCTGTGTCTTTAACAAT-TT-AGGCCACATTTTATTCTCGGAAGGAAAGTTT-GTATCAGGT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5081583 126 - 111193037 CTTTTATTTATTAACATATCAACTTATTAACATTAATTGCTATAAACACTTCCCTTGCTATTTTTATTCTGTGTCTTTAACAAT-TT-AGGCCACATTTTATTCTCGGAAGGAAAGTTT-GTATCAGGT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3472883 126 + 3644372 CTTTTATTTATTAACATATCAACTTATTAACATTCATTGCTATAAACACTTCCCTTGCTATTTTTATTCTGTGTCTTTAACAAT-TT-AGGCCACATTTTATTCTCGGAAGGAAAGTTT-GTATCAGGT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3429820 126 - 10304083 CTTTTATTTATTAACATATCAACTTATTAACATTAATTGCTATAAACACTTCCCTTGCTATTTTTATTCTGTGTCTTTAACGAT-TT-AGGCCACATTTTATTCTCGGAAGGAAAGTTT-GTATCAGGT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3530336 122 - 107702431 CTTTTATTTATTAGCATATCAACTTATTAACATTAATTGCTATAAACACTTCCCTTGCTATT----TTCTGTGTCTGTAACAAT-TT-AGGCCACATTTTATTCTCGGAAGGAAAATTT-GTATCAGGT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1061450 126 + 1565135 CTTTTATTTATTAACATATCAACTTATTAACATTAATTGCTATAAACACTTCCCTTGCTATTTTTATTCTGTGTCTTTAACAAG-TT-AGGCCACATTTTATTCTCGGATGGAAAGTTT-GTATCAGGT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3423793 126 - 13651311 CTTTTATTTATTAACATATCAACTTATTGACATTAATTGCTATAAACACTTCCCTTGCTATTTTTATTCGGTGTCTTTAACAAT-TT-AGGCCACATTTTATTCTTGGAAGGAAAATTT-GTATCAGGT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3509309 126 - 108792865 CTTTTACTTATTAACATATCGACTTGTTAACGTTACTTGCTACAAACACTTTCCTTGCTATTTTTGTTCTCTGTCTTTCACGAT-TT-AGGCCACATTTTACTCTTGGAAGGAAAATTC-TTATCAGGT i calJac3.chr14 C 0 I 612 s saiBol1.JH378218 3156222 127 - 7082604 CTTTTATTTATTGACATATCAACTTGTTAACATTAATTGCTACCAACACTTTCCTTGCTCTTTTTATTCTGTGTCTTTCACAAT-TT-AGGCCACGTTTTACTCTTGGAAGGCAAATTCGTTATCAGGT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 642357 126 + 5243153 CTTTTATTTATTAACATATCAACTTGTTAACATTAATTGCTACAAACACTCTCCTTGCTATTTTTATTCTGTATCTTTCACAAT-TT-AGGCCACATTTTACTCTTGGAAGGAAAATTC-GTATCAGGT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3384790 126 + 7587287 CTTTCATTTATTAACATATCAACTTGTTAACATTAATTGCTACAAACACTTTCCTTGCTATTTTTATTCTGTGTCTTTCACAAT-TT-AGGCCACATTTTACTCTTGGAAGGAAAATTC-GTATCAGGT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2587028 108 + 5252280 CT------------CATAAAAATTTACTAACATAAGTGG----AAATACTTTCCTTGCTGTTTTTATTCTGT---CTTGACAGT-TTCACGTGATGTTTTACCCACTGAAGGAGAATTA-GTGCCAGGT i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 680153 109 + 2232271 ----TACTTATTCCTATTTTAAC-CATCAAGATAAA-------------TTTTTCTGCTGTTTTTATTCTTGTGACTTAATACTATT-AGGTTACATTTTATCATCTGAACAAAAATTA-GTATCAGAT i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91448098 44 - 120129022 I a score=52513.000000 s hg38.chr2_KI270769v1_alt 108731 4 + 120616 GGTG s panTro5.chr2A 3571194 4 + 111504155 GGTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3431495 4 + 114371477 GGTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 309975 4 + 637652 GGTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3105757 4 + 81552678 GGTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3369579 4 + 108979918 GGTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5081709 4 - 111193037 GGTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3473009 4 + 3644372 GGTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3429946 4 - 10304083 GGTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3530458 4 - 107702431 GGTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1061576 4 + 1565135 GGTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3423919 4 - 13651311 GGTG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3510047 4 - 108792865 GGTG i calJac3.chr14 I 612 C 0 s saiBol1.JH378218 3156349 4 - 7082604 GGTG i saiBol1.JH378218 C 0 I 763 s cebCap1.NW_016107454v1 642483 4 + 5243153 GGTG i cebCap1.NW_016107454v1 C 0 I 903 s aotNan1.NW_018509326v1 3384916 4 + 7587287 GGTG i aotNan1.NW_018509326v1 C 0 I 622 s otoGar3.GL873658 2587136 4 + 5252280 GCTG i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 680262 4 + 2232271 GGGG i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91448098 44 - 120129022 I a score=40175.000000 s hg38.chr2_KI270769v1_alt 108735 6 + 120616 CAGCTG s panTro5.chr2A 3571198 6 + 111504155 CAGCTG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3431499 6 + 114371477 CAGCTG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 309979 6 + 637652 CAGCTG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3105761 6 + 81552678 CAGCTG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3369583 6 + 108979918 CAGCTG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5081713 6 - 111193037 CAGCTG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3473013 6 + 3644372 CAGCTG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3429950 6 - 10304083 CAGCTG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3530462 6 - 107702431 CAGCTG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1061580 6 + 1565135 CAGCTG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3423923 6 - 13651311 CAGCGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3510051 6 - 108792865 CGGCGG i calJac3.chr14 C 0 C 0 s otoGar3.GL873658 2587140 6 + 5252280 TGGCCG i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 680266 4 + 2232271 --TATG i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91448098 44 - 120129022 I e saiBol1.JH378218 3156353 763 - 7082604 I e cebCap1.NW_016107454v1 642487 903 + 5243153 I e aotNan1.NW_018509326v1 3384920 622 + 7587287 I a score=14733.000000 s hg38.chr2_KI270769v1_alt 108741 3 + 120616 GCC s panTro5.chr2A 3571204 3 + 111504155 GCC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3431505 3 + 114371477 GCC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 309985 3 + 637652 GCC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3105767 3 + 81552678 GCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3369589 3 + 108979918 GCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5081719 3 - 111193037 GCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3473019 3 + 3644372 GCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3429956 3 - 10304083 GCA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3530468 3 - 107702431 GCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1061586 3 + 1565135 GCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3423929 3 - 13651311 GCA i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2587146 3 + 5252280 ATA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91448142 3 - 120129022 GCT i mm10.chr12 I 44 C 0 s dasNov3.JH580157 680270 3 + 2232271 GCT i dasNov3.JH580157 C 0 I 6 e saiBol1.JH378218 3156353 763 - 7082604 I e cebCap1.NW_016107454v1 642487 903 + 5243153 I e aotNan1.NW_018509326v1 3384920 622 + 7587287 I e calJac3.chr14 3510057 0 - 108792865 C a score=33839.000000 s hg38.chr2_KI270769v1_alt 108744 4 + 120616 CTGC- s panTro5.chr2A 3571207 4 + 111504155 CTGC- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3431508 4 + 114371477 CTGC- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 309988 4 + 637652 CTGC- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3105770 4 + 81552678 CTGC- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3369592 4 + 108979918 CTGC- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5081722 4 - 111193037 CTGC- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3473022 4 + 3644372 CTGC- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3429959 4 - 10304083 CTGC- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3530471 4 - 107702431 CTGC- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1061589 4 + 1565135 CTGC- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3423932 4 - 13651311 CTGC- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3510057 4 - 108792865 CTGC- i calJac3.chr14 C 0 C 0 s aotNan1.NW_018509326v1 3385542 4 + 7587287 CTGC- i aotNan1.NW_018509326v1 I 622 C 0 s otoGar3.GL873658 2587149 4 + 5252280 CTGA- i otoGar3.GL873658 C 0 I 9 s mm10.chr12 91448145 4 - 120129022 CTGT- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 680279 4 + 2232271 -TAAG i dasNov3.JH580157 I 6 C 0 e saiBol1.JH378218 3156353 763 - 7082604 I e cebCap1.NW_016107454v1 642487 903 + 5243153 I a score=505980.000000 s hg38.chr2_KI270769v1_alt 108748 61 + 120616 CTGTCCT---------------------------------CA------------CGTGCCAGGTA---------------A---GAGCATCTGGAGCTGAGGCTTGGTGTTGAACTCCGCACCT s panTro5.chr2A 3571211 61 + 111504155 CTGTCCT---------------------------------CA------------CGTGCCAGGTA---------------A---GAGCATCTGGAGCTGAGGCTCGGTGTTGAGCTCCGCACCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3431512 61 + 114371477 CTGTCCT---------------------------------CA------------CGTGCCAGGTA---------------A---GAGCATCTGGAGCTGAGGCTCGGTGTTGAGCTCCGCACCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 309992 61 + 637652 CTGTCCT---------------------------------CA------------CGTGCCAGGTA---------------A---GAGCATCTGGAGCTGAGGCTCGGTGTTGAACTCTGCACCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3105774 61 + 81552678 CTGTCCT---------------------------------CA------------CGCGTCAGGTA---------------A---GAGCATCTGGAGCCGAGGCTCGGTGTTGAACTCCGCACCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3369596 61 + 108979918 CTGTCCT---------------------------------CA------------CGCACCAGGTA---------------A---GAGCATCTGGAGCCGAGGCTCGGTGTTGAACTCCGCACCT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5081726 61 - 111193037 CTGTCCT---------------------------------CA------------CGCGCCAGGTA---------------A---GAGCATCTGGAGCCGAGGCTCGGTGTTGAACTCCGCACCT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3473026 61 + 3644372 CTGTCCT---------------------------------CA------------CGCGCCAGGTA---------------A---GAGCATCTGGAGCCGAGGCTCGGTGTTGAACTCCGCACCT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3429963 61 - 10304083 CTGTCCT---------------------------------CA------------CGCGCCAGGTA---------------A---GAGCATCTGGAGCCAAGGCTCGGTGTTGAACTCCGCACCT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3530475 61 - 107702431 CTGTCCT---------------------------------CA------------CACGCCAGGTA---------------A---GAGCATCTGGAGCCGAGGCTCGGTGTTGAACTCCGCACCT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1061593 61 + 1565135 CTGTCCT---------------------------------CA------------CGCGCCAGGTA---------------A---GAGCATCTGGAGCCAAGGCTCGGTGTTGAACTCCGCACCT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3423936 61 - 13651311 CTGTCCT---------------------------------CA------------CACGCCAGGTA---------------A---GAACATCTGGAGCCGAGGCTCGGTGTTGAACTCCGCACCT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3510061 58 - 108792865 CTGTCCG---------------------------------CA------------CACGCCAGGTA--------------------AGTGTTTGCAGCCGAGCCT-GGTGTTGAACTCCACACCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3157116 60 - 7082604 CTGTCCT---------------------------------CA------------CACGCCAGGTA---------------A---GAGTGTTCGCAGAGGAGCCT-GGTGTTGAACTCCACACCT i saiBol1.JH378218 I 763 C 0 s aotNan1.NW_018509326v1 3385546 60 + 7587287 CTGTCCT---------------------------------CA------------CACGCCAGGTA---------------A---GAGCGTTTGCAGCCGAGCCT-GGTGTTGAACTCCACACCT i aotNan1.NW_018509326v1 C 0 I 42 s otoGar3.GL873658 2587162 104 + 5252280 CTGCTCTGGCAGGTGCTCAGTGTCACACTCGCTCTACTAGCA------------CGTCCCAGGAAAACCCGCTCACCTCca---gcccactgagagatgaggca-gatgctgtctgccat---- i otoGar3.GL873658 I 9 I 2 s mm10.chr12 91448149 68 - 120129022 CTGACCT---------------------------------CAGTGTGAGTGACCACTGCTAGGCA---------------GCATAAGTATCTGCAGCTCTTGCTTAGGGT------CCACAC-- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 680283 58 + 2232271 TTATACT---------------------------------CA------------CA---CAAGCA---------------A---AAGCATCTGCAGCTAAAGCTCAGTGTTTAACTTCATGTCT i dasNov3.JH580157 C 0 C 0 e cebCap1.NW_016107454v1 642487 903 + 5243153 I a score=288004.000000 s hg38.chr2_KI270769v1_alt 108809 56 + 120616 CCGTGCTCTCTATA-GAGAC-----ACACAGTCAGGAA--AAG-CACTGGCT----------------------------------CCAACCCCATGTA------------------------------------ s panTro5.chr2A 3571272 56 + 111504155 CCGTGCTCTCTATA-GAGAC-----ACACAGTCAGGAA--AAG-CACTGGCT----------------------------------CCAACCCCATGTA------------------------------------ i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3431573 56 + 114371477 CTGTGCTCTCTATA-GAGAC-----ACACAGTCAGGAA--AAG-CACTGGCT----------------------------------CCAACCCCATGTA------------------------------------ i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310053 56 + 637652 CCGTGCTCTCTATA-GAGAC-----ACACAGTCAGGAA--AAG-CACTGGCT----------------------------------CCAACCCCATGTA------------------------------------ i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3105835 55 + 81552678 CCACGCTCTCTCTA-GAGAT-----ACACAGTTAGGAA--AAG-CACCGGCT----------------------------------CCAG-CCCATGTA------------------------------------ i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3369657 56 + 108979918 CCGCACTCTCTATA-GAGAC-----GCACAGTTAGGAA--AAG-CACCGGCT----------------------------------CCAGCCCCATGTA------------------------------------ i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5081787 56 - 111193037 CCGCACTCTCTATA-GAGAC-----GCACAGTTAGGAA--AAG-CACCGGCT----------------------------------CCAGCCCCATGTA------------------------------------ i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3473087 56 + 3644372 CCGCACTCTCTATA-GAGAC-----GCACAGTTAGGAA--AAG-CACCGGCT----------------------------------CCAGCCCCATGTA------------------------------------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3430024 56 - 10304083 CCGCACTCTCTATA-GAGAC-----GCACAGTTAGGAA--AAG-CACCGGCT----------------------------------CCAGCCCCATGTA------------------------------------ i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3530536 56 - 107702431 CCGCACTCTCTATA-GACAC-----ACACAGTTAGGAA--AAG-CACCGGCT----------------------------------CCGGCCCCGTGTG------------------------------------ i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1061654 56 + 1565135 CCGCACTCTCTATA-GAGAC-----GCACAGTTAGGAA--AAG-CACCGGCT----------------------------------CCAGCCCCATGTA------------------------------------ i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3423997 56 - 13651311 CCGCACTCTCTATT-GAGAC-----ACACAGTTAGGAA--AAG-CACCGGCT----------------------------------CCAGCCCCATGTA------------------------------------ i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3510119 42 - 108792865 ---------------GAGAA-----ACACCGTTAGGAA--AAG-CCCCCACT----------------------------------CCAGTTCTGTGCC------------------------------------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3157176 42 - 7082604 ---------------GAGAA-----ACACCGTTAGGAA--AAG-CCCCGGCT----------------------------------CCCGTTCCATGCC------------------------------------ i saiBol1.JH378218 C 0 C 0 s otoGar3.GL873658 2587268 97 + 5252280 ctacactccagatatgagaatggtggcacagacaggcc--atgtcactggcccaatctcacccagtaagACTGCCCCAAACACATGCCAGCCCCACGTC------------------------------------ i otoGar3.GL873658 I 2 I 8 s mm10.chr12 91448217 30 - 120129022 --------------------------TGGAGCAGAAAT--GAG-TCTGGACT----------------------------------CCA--CCCA---------------------------------------- i mm10.chr12 C 0 C 0 s dasNov3.JH580157 680341 87 + 2232271 -------CATTATA-AACAT-----ATCAATTTTGAAAACAAG-CACTGACC----------------------------------CAGGAGCCTAGTGACTGATGAAACTCAGGCAAGATGCCTAATGAGTTTG i dasNov3.JH580157 C 0 C 0 e cebCap1.NW_016107454v1 642487 903 + 5243153 I e aotNan1.NW_018509326v1 3385606 42 + 7587287 I a score=403026.000000 s hg38.chr2_KI270769v1_alt 108865 41 + 120616 CCCTC-------CAC-CTCCTCTCCGCCTCATTTGGCTACAGTTTTCCT s panTro5.chr2A 3571328 41 + 111504155 CCCTC-------CAC-CTCCTCTCTGCCTCATTTGGCTACAGTTTTCCT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3431629 41 + 114371477 CCCTC-------CAC-CTCCTCTCTGCCTCATTTGGCTACAGTTTTCCT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310109 40 + 637652 CCCTC-------CAC-CTCCTCTC-GCCTCATTTGGCTACAGTTTTCCT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3105890 41 + 81552678 CCCTC-------CAC-CTCCTCTCCGCCTCGTTTGGCTACAGTTTTCCT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3369713 41 + 108979918 CCCTT-------CAC-CTCCTCTCCACCTCGTTTGGCTACAGTTTTCTT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5081843 41 - 111193037 CCCTT-------CAC-CTCCTCTCCACCTCGTTTGGCTACAGTTTTCTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3473143 41 + 3644372 CCCTT-------CAC-CTCCTCTCCACCTCGTTTGGCTACAGTTTTCTT i macNem1.NW_012011978v1 C 0 I 314 s cerAty1.NW_012000820v1 3430080 41 - 10304083 CCCTT-------CAC-CTCCTCTCCACCTCGTTTGGCTACAGTTTTCTT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3530592 41 - 107702431 CCCTT-------CAC-CTCCTCTCCCCCTCGTTTGGCTACAGTTTTCTT i chlSab2.chr14 C 0 I 313 s manLeu1.NW_012104432v1 1061710 41 + 1565135 CCCTT-------CAC-CTCCTCTCCACCTCGTTTGGCTACAGTTTTCTT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3424053 41 - 13651311 CCCTG-------CAC-CTCCTCTCCACCTCGTCTGGCTACAGTTTTCTT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3510161 41 - 108792865 CCCTT-------CAC-CTCCTTTCCGCCAGGCTTGGCTACAGTTTTCCT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3157218 41 - 7082604 CCCTC-------CAC-CTCCTTTCCGCCTGGCTTGGCTTCAGTTTTCCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 643390 41 + 5243153 CCCTT-------CAC-CTCCTTTCCGCCTGGCTTGGCTACAGTGTTCCT i cebCap1.NW_016107454v1 I 903 C 0 s aotNan1.NW_018509326v1 3385648 41 + 7587287 CCCTG-------CAC-CTCCTTTCCGCCTGGCTTGGCTACAGTTTTCCT i aotNan1.NW_018509326v1 I 42 C 0 s otoGar3.GL873658 2587373 49 + 5252280 CCCTGGTACACACACACTGCCCTCTGTTTTCCTCAGGTTCAGTTTTCCT i otoGar3.GL873658 I 8 C 0 s mm10.chr12 91448247 18 - 120129022 -------------------CCCTC------------CTACAGTGCCCCT i mm10.chr12 C 0 C 0 s dasNov3.JH580157 680428 41 + 2232271 TTCCA-------CCC-CTCTATTCTATTTCCTTTGGGGAGAGTTTTCCT i dasNov3.JH580157 C 0 C 0 a score=2655908.000000 s hg38.chr2_KI270769v1_alt 108906 262 + 120616 AAGAATTAGCATCAGGGCCCACATGTTGCTGGTGGGCAGGAgaggacaattcagccacatccgtccagactaaaaacgcacgtgccttttaattcagtttttacttttaggaatttaccctacagaaaaacacac-----agaagtgcaaaatgacaagcatgtaagggtatttattac------------------------------agccctg--ttcacaa----gagcaaaaaattgagaacaatgtatatactcattg-ttgggggtcaatgactcactgaaataaattaatggttaa s panTro5.chr2A 3571369 262 + 111504155 AAGAATTAGCATCAGGGCCCACGTGTTGCTGGTGGGCAGGAgaggacaattcagcgacatccgtccagactaaaaacgcacatgccttttaattcagttttcacttttaggaatttaccctacagaaaaacacac-----ataagtgcaaaatgacaagcatgtaagggtatttattac------------------------------agccctg--ttcacaa----gagcaaaaaattgggaacaatgtatatactcatcg-ttgggggtcaatgacttgctgaaataaattaatggttaa i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3431670 262 + 114371477 AAGAATTAGCATCAGGGCCCACGTGTTGCTGGTGGGCAGGAgaggacaattcagcgacatccgtccagactaaaaacgcacgtgccttttaattcagttttcacttttaggaatttaccctacagaaaaacacac-----ataagtgcaaaatgacaagcatgtaagggtatttattac------------------------------agccctg--ttcacaa----gagcaaaaaattgggaacaatgtatatactcatcg-ttgggggtcaatgacttgctgaaataaattaatggttaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310149 259 + 637652 AAGAATTAGCATCAGGGCCCACGTGTTGCTGGTGGGCAGGAgaggacaattcagcgacatccgtccagact-aaaacgcacgtgccttttaattcagttttcacttttaggaatttaccctacagaaaaacacac-----ataagtgcaaaatgacaagcatgtaagggtattta-tac------------------------------agcactg--ttcacaa----gagc-aaaaattgggaacgatgtatatactcatca-ttgggggtcaatgactcgctgaaataaattaatggttaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3105931 262 + 81552678 AAGAATTAGCATCAGGGCCCACGTGTTGCTGGTGGGCAGGAgaggacaattcagcgacatccatccaaactagaaacacacgtgccttttaattcagttttcacttttaggaatttaccctacagaaaaacacac-----ataagtgcaaaatgataagcatgtaagggtatttattac------------------------------agcactg--ttcacaa----gagcaaaaaattgggaacaatgtatatattcatca-ttgaagatcaacaactcactgaaataaattaatggttaa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3369754 260 + 108979918 AAGAACTAGCATCAGGGCCCACGTGTTGCTGGTGGGCAGGAAaggacaattcagagacatctgtccaaactaaaaacgcatgtgccttttaattcagttttcacttttaggaatttaccctacagaaaaacac-------ataagtgcaaaatgacaagcatgtcaggatatttattac------------------------------agcactg--ttcacaa----gagcaaaaaattgggaacaatgtatgtcctcatta-ttgggggtcaaggactcgctgaaataacttaatggttaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5081884 260 - 111193037 AAGAACTAGCATCAGGGCCCACGTGTTGCTTGTGGGCAGGAAaggacaattcagagacatctgtccaaactaaaaacgcatgtgccttttaattcagttttcacttttaggaatttaccctacagaaaaacac-------ataagtgcaaaatgacaagcatgtcaggatatttattac------------------------------agcactg--ttcacaa----gagcaaaaaattgggaacaatgtatgtcctcatta-ttgggggtcaaggactcgctgaaataacttaatggttaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3473498 260 + 3644372 aagaaCTAGCATCAGGGCCCACGTGTTGCTGGTGGGCAGGAAaggacaattcggagacatctgtccaaactaaaaacgcacgtgccttttaattcagttttcacttttaggaatttaccctacagaaaaacac-------gtaagtgcaaaatgacaagcatgtcaggatatttattac------------------------------agcactg--ttcacaa----gagcaaaaaattgggagcaatgtatgtcctcatta-ttgggggtcaaggactcgctgaaataacttaatggttaa i macNem1.NW_012011978v1 I 314 C 0 s cerAty1.NW_012000820v1 3430121 260 - 10304083 AAGAACTAGCATCAGGGCCCACGTGTTGCTGGTGGGCAGGAAaggacaattcagagacatctgtccaaactaaaaacgcatgtgccttttaattcagttttcacttttaggaatttaccctacagaaaaacac-------ataagtgcaaaatgacaagcatgtcaggatatttattac------------------------------agcactg--ttcacaa----gagcaaaaaattgggaacaatgtatgtcctcatca-ttgggggtcaaggactcgctgaaataacttaatggttaa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3530946 259 - 107702431 aagaaCTAGCATCAGGGCCCACGTGTTGCTGGTGGCCAGGAAaggacaattcagagacatctgtccaaactaaaaacgcacgtgccttttaattcagttttcacttttaggaatttaccctacagaaaaacac--------taagtgcaaaacgacaagtatgtcaggatatttattac------------------------------agcactg--ttcacaa----gagcaaaaaattgggaacaatgtatgtcctcatta-ttgggggtcaaggactcgctgaaataacttaatggttaa i chlSab2.chr14 I 313 C 0 s manLeu1.NW_012104432v1 1061751 260 + 1565135 AAGAACTAGCATCAGGGCCCACGTGTTGCTGGTGGGCAGGAAaggacaattcagagacatctgtccaaactaaaaacgcatgtgccttttaattcagttttcacttttaggaatttaccctacagaaaaacac-------ataagtgcaaaatgacaagcatgtcaggatatttattac------------------------------agcactg--ttcacaa----gagcaaaaaattgggaacaatgtatgtcctcatta-ttgggggtcgaggactcgctgaaataacttaatggttaa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3424094 260 - 13651311 AAGAACTAGCATCAGGGCCCACGTGTTGCTGGTGGGCAGGAAaggacaattcagagacatctgtccaaactaaaaacgcacgtgccttttatttcagttttcacttttaggaatttaccctacagaaaaacac-------atatgtgcaaaacaacaagcatgtcaggatatttattac------------------------------agcacgg--ttcacaa----gagcaaaaagttgggaacaatgtatatactcatta-ttgggggtcaaggactcgctgaaataacttaatggttaa i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3510202 258 - 108792865 AAGAATCAGCACCAGGGCCCCCGTGTTGCTGGTGGGCAAGAGAGCTCaattcagcaacatccacccacactaaaaacaca----ccttttaattcagttttcactttcaggaatttaccctccagagaaatgcac-----acgagtgcgaaatgagaagcatgtaagtgtacttattac------------------------------agggctg--ttcacaa----gagcaaaagcttggaaacaaggtataaactcatca-ttgggggtgaaccagtcactggaataaattgatgcttaa i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3157259 290 - 7082604 AAGAATCCGCACCAGGGCCCCTGTGTTGCTGGTGGGCAAGAgaggtcaattcaacaacatccgtccaaactaaaaacacacacgccttttgattcagttttcacgattaggaatttaccctccagaaaaacatac-----ataagtgcaaaatggcaagcatgtaagggtattgattacagcaatgttcacaagggcactgttcacaagagcactg--ttcacaa----gagcaaaaacctggaaacaatgtatatactcat---tggggggtgaaccagccactgaaataaatcaatggttaa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 643431 261 + 5243153 AAGAATCTGCACCAGGGCCCCCGTGTTGCTGGTGGGCAAGAgaggacaattcagcaacatccgtccaaactaaaaacgcccatgccttttaattcagttttcacttttaggaatttacccttcagaaaagcatac-----atgagtgcaaaatgacaagc--gtaaggctatttattac------------------------------agcactg--ctcacaa----gagcaaaaacctggaaacaatgtatatactcatcattggggggtgaaccagtcactgaaataaattaacggttaa i cebCap1.NW_016107454v1 C 0 I 221 s aotNan1.NW_018509326v1 3385689 262 + 7587287 AAGAATCCACACCAGGGCCCCCGTGTTGCTGGTGGGCAAGAgaggtcaattcagc-acatccgtccaaactaaaaacgcacatgccttttaattcagttttcacgtttaggaatttaccctccagaaaaacatac-----gtaagtgcaaaatgacaaggacgtaagggtatttattac------------------------------agcactg--ttcacaa----gagcaaaagcttggagacaatgtaaatactcatcactcgggggtgaaccagtcactgaaatcaattaatggtcaa i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2587422 249 + 5252280 -AAGATTCACACTAGGGCCCTCACATCGCTGGTAGGCAAGAgaggaaagtctggcgccattcatcagaac---aaatgcaca---ctcttaatgcagttttcacttttaggaatttatcctacagaaaaatgcacttaatatatgtataaaatgaccaatatataagg----ttactgg------------------------------gggactg--tttaca----------aaaaaccggaaatagtgtatct-cccatca-ccagagatcacccactccgtggaatgaactaatcgttaa i otoGar3.GL873658 C 0 I 3 s mm10.chr12 91448265 228 - 120129022 AGAGACCAGCTCCAGGCCC----TGCTGCAGGTTGGTAAGAAA--ATAACTTGTCAGCACTTGTCTAAACAGGAAATGCA-----GTCTCCATGAAGCCCTTACC--------TTCATCCTACAAATAAACATAC-----CCAGGTA-AAAATGACAATTGT------ATGTTACTTAC------------------------------AGAACTA--CTGACAGCCATGAGCAAAG---TAGAAATAA-------GCTTATCA-CTAGGGATTCCCCACACAGTG-CATAAATC-ACACTTAA i mm10.chr12 C 0 I 3 s dasNov3.JH580157 680469 226 + 2232271 AAGAATTAGTCTTGAGACCCG-----TGCTGGTGGCCAAGGGAAAAGaatt--------------------aaaaatgcacacatagcttaagtgaattttcatttttaggaatttattctacagataaactcac-----atgagtgctaagtggcaaatgcataaggctatttattac------------------------------aacactgtttttacga----tagcaaaatattggaaatga---------tcatca-ttca----tcaccactcagtggaataaattaatgcttaa i dasNov3.JH580157 C 0 C 0 a score=487867.000000 s hg38.chr2_KI270769v1_alt 109168 68 + 120616 atacag--tacagcatgtccagcgccagagtactgtgcagctgtaa-tca---gggct-gaggc-ttgtagacact s panTro5.chr2A 3571631 68 + 111504155 atacag--tacagcatgtccagcgccagagtactgtgcagctgtaa-tca---gggct-gaggc-ttgtagacgct i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3431932 68 + 114371477 atacag--tacagcatgtccagcgccagagtactgtgcagctgtaa-tca---gggct-gaggc-ttgtagacgct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310408 68 + 637652 atacag--tacagcatgtccagcgccagagtactgtacagctgtaa-tca---gggct-gagac-ttgtagacact i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3106193 68 + 81552678 acacag--taaagcatgtccagcgccagagtactgtgcagctgtaa-tca---gggct-gaggc-tggtagatact i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370014 69 + 108979918 atgcag--tagagtatgtccagcgccagagtacagtgcagctgtaa-tca---gggctagaggc-tgggagatact i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5082144 69 - 111193037 atgcag--tagagtatgtccagcgccagagtacagtgcagctgtaa-tca---gggctagaggc-tgggagatact i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3473758 69 + 3644372 atgcag--tagagtatgtccagcgccagagtacagtgcagctgtaa-tca---gggctagaggc-tgggagatact i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3430381 69 - 10304083 acgcag--tagagtatgtccagcgccagagtacagtgcagctgtaa-tca---gggctacaggc-tgggagatact i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3531205 69 - 107702431 atgcag--tagagcatgtccagcgccagagtactgtgcagctgtaa-cca---gggctagaggc-tgggagatact i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062011 69 + 1565135 atgcag--tggagcatgtccagcgccagagtacagtgcagctgtaa-tca---gggctacgggc-tgggagatact i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3424354 69 - 13651311 atgcag--tagagcatgtccagcgccagagtactgtgcagctgtga-tca---gggctagaggc-tgggagatact i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3510460 68 - 108792865 atccag--tacagcaggtccagcgccagagtcctacgcagctgtaa-cga---gggca-aaggc-cggtagctacc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3157549 68 - 7082604 atccag--tacagcgtgtccagcgccagagtactacgcagctgtaa-gaa---gggcc-aaggc-cggtagctact i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3385951 68 + 7587287 atccag--tgcagcgtgtccggcgccagagtactgcgcagctgtaa-caa---gggct-aaggc-cggcagctgct i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2587674 56 + 5252280 aaccag--ttaaataag-ccagcaatggcattatctgcagcag----------------gaggc-cctttacacat i otoGar3.GL873658 I 3 C 0 s mm10.chr12 91448496 63 - 120129022 AATCAGGATCAGGCATGTCTGACAT----------TGAAGCTGTAA-ACAAGCGGGAC-GGGCT-CTTTACGCACT i mm10.chr12 I 3 I 293 s dasNov3.JH580157 680695 70 + 2232271 ataaat--tagagtccattcaacaatagaatagtatgaacctataagtaa---gagat-gaggctttttatatagt i dasNov3.JH580157 C 0 C 0 e cebCap1.NW_016107454v1 643692 221 + 5243153 I a score=454516.000000 s hg38.chr2_KI270769v1_alt 109236 55 + 120616 gaaatgaaacagtccccagtgaacatcatgtagaaaaaagtaaa------------------------------atgtagaacCA s panTro5.chr2A 3571699 55 + 111504155 gaaatgaaacggtccccagtgaacatcatgtagaaaaaagtaaa------------------------------atgtagaacCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432000 55 + 114371477 gaaatgaaacggtccccagtgaacatcatgtagaaaaaagtaaa------------------------------atgtagaacCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310476 55 + 637652 gaaatgaaatggtccccagtgaacatcatgtacaaaaaagtaaa------------------------------atgtagaacca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3106261 55 + 81552678 gatatgaaacggtccccagtgaacatcatgtagaaaaaagtaaa------------------------------atgtagaacca i nomLeu3.chr19 C 0 I 94 s rheMac8.chr13 3370083 54 + 108979918 gatatgaaac-gtccccagtgaacatcatgtagaaaaaagtaaa------------------------------acgtagaacca i rheMac8.chr13 C 0 I 94 s macFas5.chr13 5082213 54 - 111193037 gatatgaaac-gtccccagtgaacatcatgtagaaaaaagtaaa------------------------------acgtagaacca i macFas5.chr13 C 0 I 94 s macNem1.NW_012011978v1 3473827 54 + 3644372 gatatgaaac-gtccccagtgaacatcatgtagaaaaaagtaaa------------------------------acgtagaacca i macNem1.NW_012011978v1 C 0 I 94 s cerAty1.NW_012000820v1 3430450 54 - 10304083 gatatgaaac-gtccccagtgaacatcatgtagaaaaaagtaaa------------------------------atgtagaacca i cerAty1.NW_012000820v1 C 0 I 94 s chlSab2.chr14 3531274 54 - 107702431 gataggaaac-gtccccagtgaacatcacgtagaaaaatgtaaa------------------------------acgtagaacca i chlSab2.chr14 C 0 I 94 s manLeu1.NW_012104432v1 1062080 54 + 1565135 gatatgaaac-gtccccagtgaacatcaggtagaaaaaagtaaa------------------------------acgtagaacca i manLeu1.NW_012104432v1 C 0 I 94 s colAng1.NW_012118821v1 3424423 55 - 13651311 gatataaaacagcccccagtgaacatcatgtagaaaaaagtaaa------------------------------atgtagaacca i colAng1.NW_012118821v1 C 0 I 93 s calJac3.chr14 3510528 54 - 108792865 gatatgaaagcatccccggtgcacagcatgcagaaaag-gtgaa------------------------------atgcagaacca i calJac3.chr14 C 0 I 93 s saiBol1.JH378218 3157617 54 - 7082604 gacatgaaacactccccagtgcacagcatgcagagaag-gtaac------------------------------atggagaacca i saiBol1.JH378218 C 0 I 93 s aotNan1.NW_018509326v1 3386019 54 + 7587287 gatatgaaacggcccccagtgcacagcatgcagaaaag-gtaaa------------------------------atgtagaacca i aotNan1.NW_018509326v1 C 0 I 93 s otoGar3.GL873658 2587730 83 + 5252280 ggtatcaagcaatccccaaagcacatcacataggaaaaagtgaggcccaccaggcagatggtctgctgcctcctatgtagaaa-- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 680765 54 + 2232271 gatatgaaacaatctccaaaatatattatgt-gaaaaatgtaaa------------------------------atttagaacta i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91448559 293 - 120129022 I e cebCap1.NW_016107454v1 643692 221 + 5243153 I a score=27166.000000 s hg38.chr2_KI270769v1_alt 109291 2 + 120616 tg s panTro5.chr2A 3571754 2 + 111504155 tg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432055 2 + 114371477 tg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310531 2 + 637652 tg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3106410 2 + 81552678 tg i nomLeu3.chr19 I 94 C 0 s rheMac8.chr13 3370231 2 + 108979918 tg i rheMac8.chr13 I 94 C 0 s macFas5.chr13 5082361 2 - 111193037 tg i macFas5.chr13 I 94 C 0 s macNem1.NW_012011978v1 3473975 2 + 3644372 tg i macNem1.NW_012011978v1 I 94 C 0 s cerAty1.NW_012000820v1 3430598 2 - 10304083 tg i cerAty1.NW_012000820v1 I 94 C 0 s chlSab2.chr14 3531422 2 - 107702431 tg i chlSab2.chr14 I 94 C 0 s manLeu1.NW_012104432v1 1062228 2 + 1565135 tg i manLeu1.NW_012104432v1 I 94 C 0 s colAng1.NW_012118821v1 3424571 2 - 13651311 tg i colAng1.NW_012118821v1 I 93 C 0 s calJac3.chr14 3510675 2 - 108792865 tg i calJac3.chr14 I 93 C 0 s saiBol1.JH378218 3157764 2 - 7082604 tg i saiBol1.JH378218 I 93 C 0 s cebCap1.NW_016107454v1 643913 2 + 5243153 tg i cebCap1.NW_016107454v1 I 221 C 0 s aotNan1.NW_018509326v1 3386166 2 + 7587287 tg i aotNan1.NW_018509326v1 I 93 C 0 s otoGar3.GL873658 2587813 1 + 5252280 -g i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 680819 2 + 2232271 tg i dasNov3.JH580157 C 0 I 588 e mm10.chr12 91448559 293 - 120129022 I a score=1896245.000000 s hg38.chr2_KI270769v1_alt 109293 181 + 120616 ggagg----------------------------------------ccaaggtgggtggatcacctgaggtcaggagtttgag-accagcct----------ggccaacatggtgaaaccccgtctctactaaa----aacac-aaaaattagccgggcgtggtggtgtgccccagtaatcccagctactcaggaggctgaggcaggagaatcgcttgagcttgggaggtggaggttg s panTro5.chr2A 3571756 181 + 111504155 ggagg----------------------------------------ccaaggtgggcggatcacctgaggtcaggagtttgag-accagcct----------ggccaacatggtgaaaccccgtctctactaaa----aacac-aaaaattagccaggcgtggtggtgtgccccagtaatcccagctactcaggaggctgaggcaggagaatcgcttgagcttgggaggcggaggttg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432057 181 + 114371477 ggagg----------------------------------------ccaaggtgggcggatcacctgaggtcaggagtttgag-accagcct----------ggccaacatggtgaaaccccgtctctactaaa----aacac-aaaaattagccaggcgtggtggtgtgccccagtaatcccagctactcaggaggctgaggcaggagaatcgcttgagcttgggaggcggaggttg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310533 182 + 637652 ggagg----------------------------------------ccaaggtgggcagatcacctgaggtcaggagtttgag-accagcct----------ggccaacatggtgaaaccccgtctctactaaa----aacacaaaaaattagccgggcgtggtggtgtgccccagtaatcccagctactcaggaggctgaggcaggagaatcgcttgagcttgggaggcggaggttg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3106412 171 + 81552678 ggagg----------------------------------------ccaaggcgggtggatcacttgaggtcaggagttcgag-accagcct----------ggccaacatggtgaaaccccatctctactaaa----aacac-aaaaat----------tggtggtgtgcccctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgagtttgggaggcggaggttg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370233 181 + 108979918 ggagg----------------------------------------ccaaggcgggtggatcacttgaggtcaggagttcgaa-accagcct----------gaccaacatggtgaaaccccgtctctactaaa----aatac-aaaaattagctgggcgtggtggtgggcccctgtaatcccagctactcgggaggctgaggcgggagaatcacttgagcttgggaggcagaggctg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5082363 181 - 111193037 ggagg----------------------------------------ccaaggcgggtggatcacttgaggtcaggagttcgaa-accagcct----------gaccaacatggtgaaaccccgtctctactaaa----aatac-aaaaattagctgggcgtggtggtgggcccctgtaatcccagctactcgggaggctgaggggggagaatcacttgagcttgggaggcagaggctg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3473977 181 + 3644372 ggagg----------------------------------------ccaaggcgggtggattacttgaggtcaggagttcgaa-accagcct----------gaccaacatggtgaaaccccgtctctactaaa----aatac-aaaaattagctgggcgtggtggtgggcccctgtaatcccagctactcgggaggctgaggcgggagaatcacttgagcttgggaggcagaggctg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3430600 181 - 10304083 ggagg----------------------------------------ccaaggcgggtggatcacttgaggtcaggagttcgag-accagcct----------gaccaacatggtgaacccctgtctctactaaa----aatac-aaaaattagctgggcgtggtggtgggcccctgtaatcccagctactcgggaggctgaggcgggagaatcacttgagcttgggaggcagaggctg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3531424 181 - 107702431 ggagg----------------------------------------ccaaggcaggtggatcacttgaggtcaggagttcgag-accagcct----------gaccaacatggtgaaaccccgtctctactaaa----aatac-aaaaattagctgggcgtggtggtgggcccctgtaatcccagctactcaggaggctgaggcgggagaatcacttgagcttgggaggcagaggctg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062230 181 + 1565135 ggagg----------------------------------------ccaaggcgggtggatcacttgaggtcaggagttcgag-accagcct----------gaccaacatggtgaaaccccgtctctactaaa----aatac-aaaaattagctgggcgtggtggtgggcccctgtaatcccagctactcaggaggctgaggcaggagaatcacttgagcttgggaggcagaggctg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3424573 181 - 13651311 ggagg----------------------------------------ccaaggtgggtggatcacttgaggtcaggagttcgag-accagcct----------gaccaacatggtgaaaccccatctctactaaa----aacac-aaaaattagctgggtgtggtggtgggcccctgtaatcccagctactcgggaggctgaggcaggagaatcacttgagcttgggaggcggaggctg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3510677 181 - 108792865 ggagg----------------------------------------ccaaggcgggtggatcacttgaggtcagaagttcaag-acctgcct----------gaccaacatgatgaaaccccgtctcaactaaa----aacac-aaaaattagccaggcgtggtggcaggcacctgtaaccccagctactcaggaggctgaggcaggagaatcgcttgagcttgggaggcagaggttg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3157766 181 - 7082604 ggagg----------------------------------------ccaaggcaggtggatcacttgaggccagaagttcaag-accagcct----------gaccaacatgatgaaaccccatctctactaaa----aacac-aaaaatttgccaggcgtggtggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgagcttggaaagcagaggttg i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 643915 181 + 5243153 ggagg----------------------------------------ccaaggcgggtggatcacttgaggtcagaagttcaag-accagcct----------gaccaacatgatgaaaccctgtctctactaaa----aacac-aaaaattagccaggcatggtggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgagcttgggaagcagaggttg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3386168 179 + 7587287 ggagg----------------------------------------ccaaggcgggtggatcacttgaggtc--aagttcaag-accagcct----------gaccaacatgatgaaaccccgtctctactaac----aacac-aaaaattagccaggcgtggtggcaggcacctgaaatcccagctactcgggaggctgaggcaggagaattgcttgagcttgagaggcagaggtct i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2587814 236 + 5252280 GAAAGCACCAAGAACACTGACTCAACTGGACTACGCACAAAATCTCTAAAGGGTgggcagcactgtggctcagtgggtagggcgccagctccatataccgagggtggcaggttcaaacccggccccggccaaactgcaacaa-aaaaactagcctggggttgtggcaagcgcctgtggtcccaactactcaggaggctgaggcaagagaatcgcctaagcccaggaggtggaggttg i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91448559 293 - 120129022 I e dasNov3.JH580157 680821 588 + 2232271 I a score=919398.000000 s hg38.chr2_KI270769v1_alt 109474 115 + 120616 cattgagccgagatcaagccactacatgccagcctgggcgacaaagtgagactccatctcaaagaaaaaaaaaaa---aaaaagaaTCCTGACTGACATGCACTTGGATATGTGTAAA s panTro5.chr2A 3571937 114 + 111504155 cagtgagccgagatcaagccactacatgccagcctgggtgacaaagtgaggctccatctcaaag-aaaaaaaaaa---aaaaagaaTCCTGACTGACATGCACTTGGATATGTGTAAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432238 111 + 114371477 cagtgagccgagatcaagccactacatgccagcctgggtgacaaagtgaggctccatctcaaag----aaaaaaa---aaaaagaatcctgactgacatgcacttggatatgtgtaaa i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310715 115 + 637652 cagtgagccgagatcaagccactacatgccagcctgggcgacaaagtgagactccatctcaaagaaaaaaaaaaa---ctgaagaatcctgactgacatgcacttggatatgtgtgaa i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3106583 111 + 81552678 cagtgagccgagatcgagccactagatgccaacctgggcaacaaagtgagactccatctcaaag----aaaaaaa---aaaaagaatcctgactgacatgcacttggatatgcgtaaa i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370414 112 + 108979918 cagtgagccgagatccagccactgcactccagcctgggcgacaaagtgaaactctgtctcaaag---aaaaaaaa---aaaaaaaatcctgactgacatgcacttggatatacatcaa i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5082544 111 - 111193037 cagtgagccgagatccagccactgcactccagcctgggcgacaaagtgaaactctgtctcaaag----aaaaaaa---aaaaagaatcctgactgacatgcacttggatatacatcaa i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474158 111 + 3644372 cagtgagccgagatccagccactgcactccagcctgggcgacaaagtgaaactctgtctcaaag----aaaaaaa---aaaaagaatcctgactgacatgcacttggatatacatcaa i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3430781 111 - 10304083 cagtgagccgagatccagccactgcactccagcctgggcgacacagtgagactctgtctcaaag----gaaaaaa---aaaaagaatcctgactgacatgcgcttggatatacataaa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3531605 111 - 107702431 cagtgagccgagatcgagccactgcactccagcctgggcgacaaagtgaggctctgtctcaaag----aaaaaaa---aaaaagaatcctgactgacatgcacttggatatacataaa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062411 110 + 1565135 cagtgagccgagatccagccactgcactccagcctgggcgacacagtgagactctgtctcaaag-----aaaaaa---aaaaagaatcctgactgacacgcgcttggatatacataaa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3424754 114 - 13651311 cagtgagccgagatcgagccactgcactccagcctgggtgacaaagtgagactctgtctcaaaa----aaaaaaaaacaaaaagaatcctgactgacatgcacttggatatacataaa i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3510858 101 - 108792865 cagtgagccgagactgcgccatcacactccagcctgggcaatggagcgagactccatctca-----------------aaaaagaaTCCTGACTGACATGCACTTGGGTATGCATAAA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3157947 101 - 7082604 cagtgagccgagatcgcgccaccacactccagcctgggcaatgaagcgagtctccatctca-----------------aaaaagaatcttgactgacgcgcacgtgggtatgcatgaa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 644096 101 + 5243153 cagtgagctgagatcgtgccgtcacactccagcctgggcaacggagcgagactccatctca-----------------aaaaggaatcctgactgacacgcacttgggtatgcataaa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3386347 101 + 7587287 cagtgagccgagatcacaccatcacactccagcctgggcaacggaccgagactccatctca-----------------aaaaagaatcctgactgacacgcacttgggtatgcataaa i aotNan1.NW_018509326v1 C 0 C 0 e mm10.chr12 91448559 293 - 120129022 I e dasNov3.JH580157 680821 588 + 2232271 I e otoGar3.GL873658 2588050 0 + 5252280 C a score=676001.000000 s hg38.chr2_KI270769v1_alt 109589 76 + 120616 GTCACTctaaaaataa--tttttttagtgga-atactggttactttcagggagagaaactgggaggctgggaacagggg s panTro5.chr2A 3572051 74 + 111504155 GTCACTctaaaaataa----tttttagtgga-atactggttactttcagggagagaaactggggggctgggaacggggg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432349 74 + 114371477 gtcactctaaaaataa----tttttagtgga-atactggttactttcagggagagaaactggggggctgggaacggggg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310830 74 + 637652 gtcactctaaaaataa---ttttttagtgga-atactggttactttcagggagagaaactagggggct-ggaacggggg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3106694 78 + 81552678 gtccctttaaaaataatttttttttaacgga-atactggttactttcagggagagaaactggggggctgggaacagggg i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370526 73 + 108979918 gtcactctaaaaataa--ttttttaaatgga-atactggttactttca-ggagagaaagtggggggctgggaac--ggg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5082655 73 - 111193037 gtcactctaaaaataa--ttttttaaatgga-atactggttactttca-ggagagaaagtggggggctgggaac--ggg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474269 73 + 3644372 gtcactctaaaaataa--ttttttaaatgga-atactggttactttca-ggagagaaagtggggggctgggaac--ggg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3430892 75 - 10304083 gtcactctaaaaggaa--ttttttaaatgga-atactggttactttca-ggagagaaagtggggggctgggaacagggg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3531716 74 - 107702431 gtcactctaaaaataa---tttttaaatgga-atactggttactttca-ggagagaaagtggggggctgggaacaggga i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062521 75 + 1565135 gtcactctaaaaataa--ttttttaaatgga-atactggttcctttca-ggagagaaagtggggggctgggaacagggg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3424868 76 - 13651311 gtcactgtaaaaataa--ttttttaaatgga-atactggttactttcagggagagaaagtagggggctgggaacagggg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3510959 74 - 108792865 GTCACTCTAAAAATAA---TTTTT-AATAGA-ATACTGGTTACTTGCAGGGAGAGAAACTGGGGGGCTGGGAATGGGGG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158048 75 - 7082604 gtcactctcaaaataa---tgtttaaatgga-atactggttactttcaaggagagaaacgaggtggctgggaacagggg i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 644197 75 + 5243153 gtcactctaaaaataa---ttttttaatgga-atactggttactttcagggagagaaactggggggctgggaacggggg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3386448 75 + 7587287 gtcactctaaaaataa---ttttttaatgga-atactggttactttcagggagagaaactggggggctgggaacggggg i aotNan1.NW_018509326v1 C 0 C 0 s mm10.chr12 91448852 76 - 120129022 actgCTCTAAAGGAAC---TATTAAAATGTAGACACTGGCACCCTTCAAGGAGAAAACTGGGGCTTCGAGGAACAAAGG i mm10.chr12 I 293 I 160 e dasNov3.JH580157 680821 588 + 2232271 I e otoGar3.GL873658 2588050 0 + 5252280 C a score=117570.000000 s hg38.chr2_KI270769v1_alt 109665 12 + 120616 tcagagggagac s panTro5.chr2A 3572125 12 + 111504155 tcagagggagac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432423 12 + 114371477 tcagagggagac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310904 12 + 637652 tcagagggagac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3106772 12 + 81552678 tcagagagagac i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370599 12 + 108979918 tcagagggatac i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5082728 12 - 111193037 tcagagggatac i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474342 12 + 3644372 tcagagggatac i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3430967 12 - 10304083 tcagagggacac i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3531790 12 - 107702431 tcagagggacgc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062596 12 + 1565135 tcagagggatac i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3424944 12 - 13651311 tcagagggacac i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3511033 12 - 108792865 TCAGAGGGAGAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158123 12 - 7082604 tcggagggagac i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 644272 12 + 5243153 tcagagggagac i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3386523 12 + 7587287 tcagagggagac i aotNan1.NW_018509326v1 C 0 I 9 e mm10.chr12 91448928 160 - 120129022 I e dasNov3.JH580157 680821 588 + 2232271 I e otoGar3.GL873658 2588050 0 + 5252280 C a score=20055.000000 s hg38.chr2_KI270769v1_alt 109677 2 + 120616 ct s panTro5.chr2A 3572137 2 + 111504155 ct i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432435 2 + 114371477 ct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310916 2 + 637652 ct i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3106784 2 + 81552678 ct i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370611 2 + 108979918 ct i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5082740 2 - 111193037 ct i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474354 2 + 3644372 ct i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3430979 2 - 10304083 ct i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3531802 2 - 107702431 ct i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062608 2 + 1565135 ct i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3424956 2 - 13651311 ct i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3511045 2 - 108792865 CT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158135 2 - 7082604 ct i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 644284 2 + 5243153 ct i cebCap1.NW_016107454v1 C 0 C 0 e mm10.chr12 91448928 160 - 120129022 I e dasNov3.JH580157 680821 588 + 2232271 I e otoGar3.GL873658 2588050 0 + 5252280 C e aotNan1.NW_018509326v1 3386535 9 + 7587287 I a score=7513.000000 s hg38.chr2_KI270769v1_alt 109679 1 + 120616 t s panTro5.chr2A 3572139 1 + 111504155 t i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432437 1 + 114371477 t i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310918 1 + 637652 t i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3106786 1 + 81552678 t i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370613 1 + 108979918 t i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5082742 1 - 111193037 t i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474356 1 + 3644372 t i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3430981 1 - 10304083 t i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3531804 1 - 107702431 t i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062610 1 + 1565135 t i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3424958 1 - 13651311 t i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3511047 1 - 108792865 C i calJac3.chr14 C 0 I 2 s saiBol1.JH378218 3158137 1 - 7082604 t i saiBol1.JH378218 C 0 I 2 s cebCap1.NW_016107454v1 644286 1 + 5243153 c i cebCap1.NW_016107454v1 C 0 I 6 s dasNov3.JH580157 681409 1 + 2232271 T i dasNov3.JH580157 I 588 C 0 e mm10.chr12 91448928 160 - 120129022 I e otoGar3.GL873658 2588050 0 + 5252280 C e aotNan1.NW_018509326v1 3386535 9 + 7587287 I a score=16494.000000 s hg38.chr2_KI270769v1_alt 109680 5 + 120616 tcacc s panTro5.chr2A 3572140 5 + 111504155 tcacc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432438 5 + 114371477 tcacc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310919 5 + 637652 tcacc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3106787 5 + 81552678 tcacc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370614 5 + 108979918 tcatc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5082743 5 - 111193037 tcatc i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474357 5 + 3644372 tcatc i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3430982 5 - 10304083 tcatc i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3531805 5 - 107702431 tcatc i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062611 5 + 1565135 tcatc i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3424959 5 - 13651311 tcatc i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3511050 4 - 108792865 TGAA- i calJac3.chr14 I 2 C 0 s saiBol1.JH378218 3158140 4 - 7082604 tgaa- i saiBol1.JH378218 I 2 C 0 s dasNov3.JH580157 681410 5 + 2232271 TCTCC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91448928 160 - 120129022 I e otoGar3.GL873658 2588050 0 + 5252280 C e cebCap1.NW_016107454v1 644287 6 + 5243153 I e aotNan1.NW_018509326v1 3386535 9 + 7587287 I a score=194454.000000 s hg38.chr2_KI270769v1_alt 109685 22 + 120616 aggtcccctttcata-----tttctaa-- s panTro5.chr2A 3572145 22 + 111504155 aggtcccctttcata-----tttctaa-- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432443 22 + 114371477 aggtcccctttcata-----tttctaa-- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310924 22 + 637652 aggtcccctttcata-----tttctaa-- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3106792 22 + 81552678 gggtcccctttcata-----tttctaa-- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370619 22 + 108979918 gggtcccctctctta-----tttctaa-- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5082748 22 - 111193037 gggtcccctctctta-----tttctaa-- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474362 20 + 3644372 gggtcccctctc--a-----tttctaa-- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3430987 22 - 10304083 gggtcccccctctta-----tttctaa-- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3531810 22 - 107702431 gggtcccctctctta-----tttctaa-- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062616 22 + 1565135 gggtcccctctctta-----tttctaa-- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3424964 22 - 13651311 gggttccctctctta-----tttctaa-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3511054 22 - 108792865 AGGTCCCCTTCCATA-----TTTCTAA-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158144 22 - 7082604 aggtcccctttcata-----tgtcgaa-- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 644293 22 + 5243153 aggtcccctttcata-----tttctaa-- i cebCap1.NW_016107454v1 I 6 C 0 s aotNan1.NW_018509326v1 3386544 22 + 7587287 gggtaccctttcata-----tttctaa-- i aotNan1.NW_018509326v1 I 9 C 0 s dasNov3.JH580157 681415 27 + 2232271 --ATCTTCCCTCTTAGTACCTCTTTAAAA i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91448928 160 - 120129022 I e otoGar3.GL873658 2588050 0 + 5252280 C a score=993186.000000 s hg38.chr2_KI270769v1_alt 109707 116 + 120616 attttaaaccatgtgcatttag-------tattta-----------ttcaaaaattaCCCTTAAA--TCAGCATTA-CCCCAATCGCCTCCAGTGAACCCCAAAACTACCTTATC------TGTGTTTATTGCCAATCCTGAC--- s panTro5.chr2A 3572167 115 + 111504155 agtttaaaccatgtgcatttag-------ta-tta-----------ttcaaaaattaCCCTTAAA--TCAGCATTA-CCCCAATTGCCTCCAGTGAACCCCAAAACTACCTTATC------TGTGTTTATTGCCAATCCTGAC--- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432465 115 + 114371477 agtttaaaccatgtgcatttag-------ta-tta-----------ttcaaaaattaCCCTTAAA--TCAGCATTA-CCCCAATTGCCTCCAGTGAACCCCAAAACTACCTTATC------TGTGTTTATTGCCAATCCTGAC--- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 310946 114 + 637652 agtttaaaccatgtgcatttag-------tattta-----------ttc-aaaaTTA-CCTTAAA--TCAGCATTA-CCCCAATCGCCTCCAGTGAACCCCAAAACTACCTTATC------TGTGTTTATTGCCAATCCTGAC--- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3106814 118 + 81552678 attttaaaccatgtgcatttag-------tattta-----------ttcaaaaattaTACTTAAATCTCAGCGTTA-CCCCAATCACCTCCAGTGAACCCCAAAACTACCTTACC------TGTGTTTATTGCCAATCCTGAC--- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370641 119 + 108979918 attttaaaccatgtgcatttac-------tattta-----------ttcaaaaattaCACTTAAATCTCAGCGTTAGCCCCAGTCACCTCCAGTGAACCCCAAAACTACCTTATT------TACGTTTATTGCCAATCCTGAC--- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5082770 119 - 111193037 attttaaaccatgtgcatttac-------tattta-----------ttcaaaaattaCACTTAAATCTCAGCGTTAGCCCCAGTCACCTCCAGTGAACCCCAAAACTACCTTATT------TACGTTTATTGCCAATCCTGAC--- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474382 119 + 3644372 attttaaaccatgtgcatttac-------tattta-----------ttcaaaaattaCACTTAAATCTCAGCGTTAGCCCCAGTCACCTCCAGTGAACCCCAAAACTACCTTATT------TACGTTTATTGCCAATCCTGAC--- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431009 119 - 10304083 attttaaaccatgtgcatttac-------tattta-----------ttcaaaaattaCACTTAAATCTCAGCGTTAGCCCCAGTCACCTCCAGTGAACCCCAAAACTACCTTATT------TACGTTTATTGCCAATCCTGAC--- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3531832 119 - 107702431 attttaaaccatgtgcatttac-------tattta-----------ttcaaaaattaCACTTAAATCTCAGCGTTAGCCCCAGTCACCTCCAGTGAACCCCAAAACTACCTTATT------TACGTTTATTGCCAATCCTGAC--- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062638 119 + 1565135 attttaaaccatgtgcatttac-------tattta-----------ttcaaaaattaCACTTAAATCTCAGCGTTAGCCCCAGTCACCTCCAGTGAACCCCAAAACTACCTTATT------TACGTTTATTGCCAATCCTGAC--- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3424986 119 - 13651311 attttaaaccatgtgcatttac-------tattta-----------ttcaaaaattaTACTTAAATCTCAGCGTTAGCCCCAGTCACCTCCAGTGAACCCCAAAACTACCTTATT------TATGTTTATTGCCAATCCTGAC--- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3511076 111 - 108792865 ATGTTAAAC-ATGTACATTTAG-------TATTT-----------------AAAGT-TACTTCAGTGTCAGCATGAGCCCTCATCGCCTCCAGTGAACCCCAAAGCCACCTTATT------TGTGTTTACTGCCAGTCCTGAC--- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158166 116 - 7082604 gtgttaaac-atgtgcatttag-------cattta-----------cccaaaaaTG-TACTTCAGTCTCAGCACGAGCCC-CATCGCCTCCAGTGAACCCCAAAGCGACCTTATT------TGTGTTTATTGCCAATCCTGAC--- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 644315 106 + 5243153 atgttaaac-atgtgcatttag-------tattta-----------ctcaaaaa------TTTAGTCTCAGCATTGCGCC-CATCGCCTCCAGCAAACCCCAAAGCTACCTCATC------TGTGTTTATTGCCAGTC-------- i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3386566 115 + 7587287 atggtaaac---gtgcatttag-------tattta-----------ctcaaaaaTC-TACTTCAGTCTCAGCATTAGCCCCCATCGCCTCCAGTGAACCCCAAAGCTACCTTATT------TGTGTTTATTGCCAATCCTGAC--- i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2588050 121 + 5252280 ATTTAAAACGATGTGCACTT----------ATCTA-----------CATGAAAATTGTACTTAAACCCTGGT-TTAATCCTAATCACATCTAGAGACCCCAAGAACAATCTTATTTACTTCTGTTTTTATTGCCAACACCAAT--- i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 681442 136 + 2232271 ATATTTCACCACTATTACCTAGAAAATAATATTTAGAAATAGTCTCTGCAAAGACTCTCCTCTAGTCTCAGATTTAATCTAAATCACATCTACCAAACATAAGAAAAACCTTGTT----------TTTACTGCTAATCCTAATGAC i dasNov3.JH580157 C 0 C 0 e mm10.chr12 91448928 160 - 120129022 I a score=620045.000000 s hg38.chr2_KI270769v1_alt 109823 64 + 120616 TGGACTGCGTTACTGTTCAATTCCAAAACTGAAATGTTTTT-AAAAGTGACAGTATGGCAACATA s panTro5.chr2A 3572282 64 + 111504155 TGGACTGAGTTACTGTTCAATTCCAAAACTGAAATGTTTTT-AAAAGTGACAGTATGGCAACATA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432580 64 + 114371477 TGGACTGAGTTACTGTTCAATTCCAAAACTGAAATGTTTTT-AAAAGTGACAGTATGGCAACATA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 311060 64 + 637652 TGGACTGCGTTACTGTTCAATTCCAAAACTGAAATGTTTTT-AAAAGTGACAGTATGGCAACATA i gorGor5.CYUI01015435v1 C 0 I 247 s nomLeu3.chr19 3106932 64 + 81552678 TGGACTGCATTGCTGTTCAATTCCAAAACTGAAATGTTTTT-CAAAGTGACAGTGTGGCAACATG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370760 64 + 108979918 TGGACTGCGTTACTGTTCAATTCCAAAACTGAAATGTTTTT-AAAAGTGACAGTGTGGCAACATG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5082889 64 - 111193037 TGGACTGCGTTACTGTTCAATTCCAAAACTGAAATGTTTTT-AAAAGTGACAGTGTGGCAACATG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474501 64 + 3644372 TGGACTGCGTTACTGTTCAATTCCAAAACTGAAATGTTTTT-AAAAGTGACAGTGTGGCAACATG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431128 64 - 10304083 TGGACTGCGTTACTGTTCAATTCCAAAACTGAAATGTTTTT-AAAAGTGACAGTGTGGCAACATG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3531951 64 - 107702431 AGGACTGCGTTACTGTTCAATTCCAAAACTGAAATGTTTTT-AACAGTGACAGTGTGGCAACATG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062757 64 + 1565135 TGGACTGCGTTACTGTTCAATTCCAAAACTGAAATGTTTTT-AAAAGTGACAATGTGGCAACATG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425105 64 - 13651311 TGGACTACGTTGCTGTTCAATTCCAAAACTGAAATGTTTTT-TAAAGTGACAGTGTGGCAACATG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3511187 64 - 108792865 TGGACTGAGCTGCTGTT-AATTCCAAAACTGAAAAGTCTTTAAAAAGTGACATCATGGCAACACA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158282 63 - 7082604 TGGACTGAGCTACTGTT-CATTCCAAAACTGAAAAGTCTTT-CAAAGTGACAGTGTGGCAACACA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 644421 54 + 5243153 ---------CTACTGTT-AATTCCAAAACTGAAAAGTCTTT-AAAAGTGACAGTGTGGCAACACG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3386681 63 + 7587287 TGGACTGAGCTACTGTT-AATTCCAAAACTGAAGAGTCTTT-AAAAGTGACAGCGTGGCAACACG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2588171 55 + 5252280 --GGCTGCACTACTGTTAAACTCT-AAATGGAAATGCTCTG-AACAATGACAAAGTAAC------ i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91449088 40 - 120129022 TGTACTGCAAAACTG-------------CTGAGAAGCTCCT-CAGA-TGAGAGCA---------- i mm10.chr12 I 160 I 7 s dasNov3.JH580157 681578 56 + 2232271 TGTTTTGCACTATTGCTAAATTCCAGAATTGTAATGCTCTT-AAAAATGACAAAGTA-------- i dasNov3.JH580157 C 0 C 0 a score=74119.000000 s hg38.chr2_KI270769v1_alt 109887 22 + 120616 ACAACCCTACAGGCGCCTCACC s panTro5.chr2A 3572346 22 + 111504155 ACAACCGTACAGGCGCCTCACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432644 22 + 114371477 ACAACCCTACAGGCGCCTCACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 311371 22 + 637652 ACAACCCTACAGGCGCCTCACC i gorGor5.CYUI01015435v1 I 247 C 0 s nomLeu3.chr19 3106996 22 + 81552678 ACAACCCTACAGGCGCCTCACC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370824 10 + 108979918 ACAACCCTGC------------ i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5082953 10 - 111193037 ACAACCCTGC------------ i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474565 10 + 3644372 ACAACCCTGC------------ i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431192 10 - 10304083 ACAACCCTGC------------ i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3532015 10 - 107702431 ACAGCCCTGC------------ i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062821 10 + 1565135 ACAACCCTGC------------ i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425169 10 - 13651311 ACAACCCTGC------------ i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3511251 10 - 108792865 ACAACCCTAC------------ i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158345 10 - 7082604 ACAACCCTAC------------ i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 644475 10 + 5243153 ACAACCCTAC------------ i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3386744 22 + 7587287 ACAACCCTACAGACGCCTCACT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2588226 19 + 5252280 ---ACCCAACAGTCCCCTCACA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91449135 9 - 120129022 ACTACACCA------------- i mm10.chr12 I 7 C 0 s dasNov3.JH580157 681634 22 + 2232271 ACAACCCTAGAGATGCCTCACA i dasNov3.JH580157 C 0 I 503 a score=474.000000 s hg38.chr2_KI270769v1_alt 109909 1 + 120616 A s panTro5.chr2A 3572368 1 + 111504155 A i panTro5.chr2A C 0 I 1331 s panPan2.chr2A 3432666 1 + 114371477 A i panPan2.chr2A C 0 I 164 s gorGor5.CYUI01015435v1 311393 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107018 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s aotNan1.NW_018509326v1 3386766 1 + 7587287 G i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2588245 1 + 5252280 A i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91449144 0 - 120129022 C e saiBol1.JH378218 3158355 0 - 7082604 C e dasNov3.JH580157 681656 503 + 2232271 I e cebCap1.NW_016107454v1 644485 0 + 5243153 C e calJac3.chr14 3511261 0 - 108792865 C e colAng1.NW_012118821v1 3425179 0 - 13651311 C e manLeu1.NW_012104432v1 1062831 0 + 1565135 C e chlSab2.chr14 3532025 0 - 107702431 C e cerAty1.NW_012000820v1 3431202 0 - 10304083 C e macNem1.NW_012011978v1 3474575 0 + 3644372 C e macFas5.chr13 5082963 0 - 111193037 C e rheMac8.chr13 3370834 0 + 108979918 C a score=15945.000000 s hg38.chr2_KI270769v1_alt 109910 17 + 120616 CCAAACACGGGCTGGGG s panTro5.chr2A 3573700 17 + 111504155 CCAAACACGGGCTGGGG i panTro5.chr2A I 1331 C 0 s panPan2.chr2A 3432831 17 + 114371477 CCAAACACGGGCTGGGG i panPan2.chr2A I 164 C 0 s gorGor5.CYUI01015435v1 311394 17 + 637652 CCAAGCACGGGCTGGGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107019 17 + 81552678 CCAAGCACAGGCTGGGG i nomLeu3.chr19 C 0 C 0 s aotNan1.NW_018509326v1 3386767 17 + 7587287 CCAAGCACAGGCTGGGG i aotNan1.NW_018509326v1 C 0 I 21 s otoGar3.GL873658 2588246 1 + 5252280 ------------T---- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91449144 14 - 120129022 -CAAGCCCCAGTCAG-- i mm10.chr12 C 0 C 0 e saiBol1.JH378218 3158355 0 - 7082604 C e dasNov3.JH580157 681656 503 + 2232271 I e cebCap1.NW_016107454v1 644485 0 + 5243153 C e calJac3.chr14 3511261 0 - 108792865 C e colAng1.NW_012118821v1 3425179 0 - 13651311 C e manLeu1.NW_012104432v1 1062831 0 + 1565135 C e chlSab2.chr14 3532025 0 - 107702431 C e cerAty1.NW_012000820v1 3431202 0 - 10304083 C e macNem1.NW_012011978v1 3474575 0 + 3644372 C e macFas5.chr13 5082963 0 - 111193037 C e rheMac8.chr13 3370834 0 + 108979918 C a score=352854.000000 s hg38.chr2_KI270769v1_alt 109927 100 + 120616 TGACAACCCTAGAGATGCCTC--------ACCGCCAAGCA----AGGGCTGGG--------GCAGGG----CCA-GGCTCGTGGGTGTGTACCTGCCGCCGCATG----TACCTGCCGCCGCCTGTACC-------- s panTro5.chr2A 3573717 88 + 111504155 TGACAACCCTAGAGATGCCTC--------ACTGCCAAGCA----AGGGCTGGG--------GCAGGG----CCA-GGCTCGTGAGTGTGTACCTGCCGCCGCCTG----TACCTGCC-------------------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432848 88 + 114371477 TGACAACCCTAGAGATGCCTC--------ACTGCCAAGCA----AGGGCTGGG--------GCAGGG----CCA-GGCTCGTGAGTGTGTACCTGCCGCCGCCTG----TACCTGCC-------------------- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 311411 88 + 637652 TGACAACCCTAGAGATGCCTC--------ACTGCCAAGCA----AGGGCTGGC--------GCAGGG----CCA-GGCTCGTGGGTGTGTACCTGCCGCCGCCTG----TACCTGCC-------------------- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107036 88 + 81552678 TGACAACCCTACAGGCGCCTC--------ACCACCAAACA----CGGGCTGGG--------GCAGGG----CCA-GGCTCGTGGGTGTGTACCTGCCGCCACCTG----TACCTGCC-------------------- i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370834 69 + 108979918 ------------AGATGCCTC--------AGCACCAAGCA----CGGGCTGGG--------GCAGGG----CCA-GGCTCGTGGGTGTG-------CCCCGGCTG----TACCTGCC-------------------- i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5082963 69 - 111193037 ------------AGATGCCTC--------AGCACCAAGCA----CGGGCTGGG--------GCAGGG----CCA-GGCTCGTGGGTGTG-------CCCCGCCTG----TACCTGCC-------------------- i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474575 69 + 3644372 ------------AGATGCCTC--------AGCACCAAGCA----CGGGCTGGG--------GCAGGG----CCA-GGCTCGTGGGTGTG-------CCCCGCCTG----TACCTGCC-------------------- i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431202 69 - 10304083 ------------AGATGCCTC--------AGCACCAAGCA----CGGGCTGGG--------GCAGGG----CCA-GGCTCGTGGGTGTG-------CCCCGCCTG----TACCTGCC-------------------- i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3532025 68 - 107702431 ------------AGATGCCTC--------AGCGCCAAGCA----CGGGCTGGG--------GCAGGG----CCA-GGCTCGTGGGTGTG-------CCCCGCCTG----TACCTG-C-------------------- i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062831 69 + 1565135 ------------AGATGCCTC--------AGCACCAAGCA----CGGGCTGGG--------GCAGGG----CCA-GGCTCGTGGGTGTG-------CCCCGCCTG----TACCTGCC-------------------- i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425179 73 - 13651311 ------------AGATGCCTC--------AGCACCAAGCACAGGCGGGCTGGG--------GCAGGG----CCA-GGCTCATGGGTGTG-------CCCCGCCTG----TACCTGCC-------------------- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3511261 51 - 108792865 ------------AGATGCCTC--------ACTGCCAAGCA----CAGGCTGGG--------GCAGGG----CCACAGCTGCTGGGTG-------------------------------------------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158355 51 - 7082604 ------------AGACGCCTC--------ACTGCCAAGCG----CAGGCCGGG--------GCAGGG----CCACGGCTGCTGGGTG-------------------------------------------------- i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 644485 51 + 5243153 ------------AGACGCCTC--------ACTGCCAAGCA----CAGGCTGGG--------GCAGGG----CCACGGCTGCTGGGTA-------------------------------------------------- i cebCap1.NW_016107454v1 C 0 C 0 s otoGar3.GL873658 2588247 71 + 5252280 --------------ATGCCCCTAGAATTAGTGGCCAAGCA----CAGGTTGGACACTCAGTGCAGGGGGGCCCT-CACTCATCG------------TCTCAC----------------------------------- i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91449158 58 - 120129022 -------------------------------TGACAAGTG----CAGGTCCCC--------CCCAGG--------AGCTC----------------TCCCTCCTGAAGATACCTGCC------------CCTTGACC i mm10.chr12 C 0 C 0 e dasNov3.JH580157 681656 503 + 2232271 I e aotNan1.NW_018509326v1 3386784 21 + 7587287 I a score=1136680.000000 s hg38.chr2_KI270769v1_alt 110027 131 + 120616 TGCCCCGCCTGGGT----ATGAAATGCACACCTGTCCACCAGGATCGCAGGCAGGGGCCACGGA-GGCTGCCACG----GAAGGACAGCTGTCACCTCGG-ACATCGCCTGC---GGCTCCAC------AGACTCTC-CTTGAAGCACAGG s panTro5.chr2A 3573805 128 + 111504155 ---CCCACCTGGGT----ATGAAATGCACACCTGTCCACCAGGATCGCAGGTAGGGGCCACGGA-GGCTGCCACG----GAAGGACAGCTGTCACCTCGG-ACATCGCCTGC---GGCTCCAC------AGACTCTC-CTTGAAGCTCAGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3432936 128 + 114371477 ---CCCGCCTGGGT----ATGAAATGCACACCTGTCCACCAGGATCGCAGGTAGGGGCCACGGA-GGCTGCCACG----GAAGGACAGCTGTCACCTCGG-ACATCGCCTGC---GGCTCCAC------AGACTCTC-CTTGAAGCACAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 311499 128 + 637652 ---CCCGCCTGGGT----ATGAAATGCACACCTGTCCACCAGGATCGCAGGCAGGGGCCACGGA-GGCTGCCACG----GAAGGACAGCTGTCACCTCGG-ACATCGCCTGC---GGCTCCAC------AGACTCTC-CTTGAAGCACAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107124 130 + 81552678 ---CCCGCCTGGGT----ATGAAACGCACACCCGTCCACCAGGATTGCAGGCAGGGTCCGCGGA-GGCTGCCACG----GAAGGACAGCTGTCACCTCAG-ACATCTCCTGC---GGCTCCACAG----AGACTCTC-CTTGAAGCACAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3370903 127 + 108979918 ---CCCACCTGGGT----ATGAAACGCACACCTGTCCACCAGGATCGCAGGCAGGGGCCCCGGA-GGCTGCCAC-------AGGACAGCAGTCGCCTCGG-ACACCGTCTGC---GGCTCCACAG----AGACTCTC-CTTGAAGCACAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5083032 127 - 111193037 ---CCCACCTGGGT----ATGAAACGCACACCTGTCCACCAGGATCGCAGGCAGGGGCCCCGGA-GGCTGCCAC-------AGGACAGCAGTCGCCTCGG-ACACCGCCTGC---GGCTCCACAG----AGACTCTC-CTTGAAGCACAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474644 127 + 3644372 ---CCCACCTGGGT----ATGAAACGCACACCTGTCCACCAGGATCGCAGGCAGGGGCCCCAGA-GGCTGCCAC-------AGGACAGCAGTCGCCTCGG-ACACCGCCTGC---GGCTCCACAG----AGACTCTC-CTTGAAGCACAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431271 127 - 10304083 ---CCCACCTGGGT----ATGAAACGCACACCTGTCCACCAGGATCGCAGGCAGGGGCCCCGGA-GGCTGCCAC-------AGGACAGCAGTCGCCTCGG-ACACCGCCTGC---GGCTCCACAG----AGACTCTC-CTTGAAGCACAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3532093 127 - 107702431 ---CCCACCTGGGT----ATGAAACGCACACCTGTCCACCAGGATCGCAGGCAGGGGCCCCGGA-GGCTGCCAC-------AGGACAGCAGTCACCTCGG-ACACCGCCTGC---GGCTCCACAG----AGACTCTC-CTTGAAGCACAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1062900 127 + 1565135 ---CCCACCTGGGT----ATGAAACGCACACCTGTCCACCAGGATCGCAGGCAGGGGCCCCGGA-GGCTGCCAC-------AGGACAGCAGTCGCCTCGG-ACACCGCCTGC---GGCTCCACAG----AGACTCTC-CTTGAAGCACAGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425252 127 - 13651311 ---CCCACCTGGGT----ATGAAACGCACACCTGTCCACCAGGATCACAGGCAGGGGCCCCGGA-GGCTGCCAC-------AGGACAGCGGGCACCTCGG-ACACCGCCTGC---GGCTCCACAG----AGACTCTC-CTTGCAGCACAGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3511312 136 - 108792865 TGTCCTGTCTGGGT----ATGAAACACACATCAGTCCACCAGGATCGCAGGCAGAGGCTGCTGG-GGCTGCCATGGAAGGAAGGATAGCTGTCACCTCGG--CCCTGCCTGC---GGCTCCACGG----GGACTCTC-CTTGAAGCACAGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158406 122 - 7082604 -------------------GGAAACGCACATCCGTCCACCAGGATGGCAGGCAGAGGCCGCCGG-GGCTGCCGTGGAAAGAAGGCTAGCTGTCACCTCGG-ACCCTGCCTGC---GGCTCCACGA----GGACTCTC-CTTGCAGCACAGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 644536 137 + 5243153 TGCCCCGCCTGGGT----ATGAAATGCACATCTGTCCACCAGGATCACAGGCAGAGGCCGCTGG-GGCTGCCATGGAAGGAAGGACAGCTGTCACCTTGG-ACCCTGCCTGC---GGCTCCACGG----GGACTCTC-CTTGAAGCACAGA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3386805 137 + 7587287 TGCCCTGCCTGGGT----ATGAAACGGACGTCCGTCCACCAGGATGGCAGGCAGAGGCCGCTGG-GGCTGCCATGGAAGGAAGGAGAGCTGTCACCTCGG-ACCCTGCCTGC---GGCTCCACGG----GGACTCTC-CTTGCAGCACAGA i aotNan1.NW_018509326v1 I 21 C 0 s otoGar3.GL873658 2588318 131 + 5252280 TGCCCTGTGTGTGTTAACACGAGAGCCA---CTGTCCGCCAAGAACA-AAGCAGGGACTGCTGATAGCTGCCAT-------GAAATGGC-GTCACCCAGGTGTCCCAGCAAC---AGCTCCA-GG----TGTCTCTCTCTTGATGCACCAA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91449216 105 - 120129022 AAAGCCATGTAGAT----A-ATGCTGCCTCGCTGTCCAACAAGAACAAAGGC----------GA-------CAT----------------------TCTG-ACCCTTCCCTCCCAGGTTCCATGGCCACAGGCTCTT-CTGGTTCCACAAG i mm10.chr12 C 0 I 123 e dasNov3.JH580157 681656 503 + 2232271 I a score=778577.000000 s hg38.chr2_KI270769v1_alt 110158 91 + 120616 TCG--AGGAGTCCCGAGCCCAGCGACCGCGCTT-GGAGTCTGCGGAAGCCGCGCAGTTCAGC-GGCAGAG--ATGCCA---CGGCCAGGGCCAC-CACACA s panTro5.chr2A 3573933 91 + 111504155 TCG--AGGAGTCCCGAGCCCAGCGACTGCACTT-GGAGTCTGCGGAAGCCACGCAGTTCAGC-GGCAGAG--ATGCCA---CGGCCAGGGCCAC-CACACA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3433064 91 + 114371477 TCG--AGGAGTCCCGAGCCCAGCGACTGCACTT-GGAGTCTGCGGAAGCCGCGCAGTTCAGC-GGCAGAG--ATGCCA---CGGCCAGGGCCAC-CACACA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 311627 91 + 637652 TCG--AGGAGTCCCAAGCCCAGCGACCGCACTT-GGAGTCTGCGGAAGCCGCGCAGTTCAGC-GGCAGAG--ATGCCA---CGGCCAGGGCCAC-CACACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107254 92 + 81552678 TCA--AGGAGCCCCGAGCCCGGCGATCGCACTCAAGAGTCTGCGGAGGCCGCGCAGTTCAGC-GGCAGGG--ATGCCA---CGGCCAGGGCCAC-CACACA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371030 91 + 108979918 TGG--AGGAGTCCCGAGCCCGGAGACCACACTC-AGAGTCTGCGGAGGCCGTGCAGTTCAGC-GGCAGGG--ATGCCG---CAGTCAGGGCCAC-CACACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5083159 91 - 111193037 TGG--AGGAGTCCCGAGCCCGGAGACCACACTC-AGAGTCTGCGGAGGCCGTGCAGTTCAGC-GGCAGGG--ATGCCG---CAGTCAGGGCCAC-CACACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474771 91 + 3644372 TGG--AGGAGTCCCGAGCCCGGAGACCACACTC-AGAGTCTGCGGAGGCCGTGCAGTTCAGC-GGCAGGG--ATGCCG---CAGTCAGGGCCAC-CACACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431398 91 - 10304083 TCG--AGGAGTCCCGAGCCCGGAGACCACACTC-AGAGTCTGCGGAGGCCGTGCAGTTCAGC-GGCAGGG--ATGCCG---CAGTCAGGGCCAC-CACACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3532220 91 - 107702431 TCG--AGGAGTCCTGAGCCCGGAGACCACATTC-AGAGTCGGAGGAGGCCGTGCAGTTCAGC-GGCAGGG--ATGCCG---CAGTCAGGGCCAC-CACACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063027 91 + 1565135 TCG--AGGAGTCCCGAGCCCGGAGACCACACTC-AGAGTGTGCGGAGGCCGTGCAGTTCAGC-GGCAGGG--ATGCCG---CAGTCAGGGCCAC-CACACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425379 91 - 13651311 TCG--AGGAGTCCTGAGCCCGGAGACCACACTC-AGAGTCTGCGGAGGCCGTGCAGTTCAGC-GGCAGGG--AAGCCA---CAGCCAGGGCCAC-CACACA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3511448 90 - 108792865 GCC--AGGAGTCCCGAGCCTGGCAAGCACACCT-GGAGTCCAC-AAAGCCACACAGTTCAGC-GGCAGGG--ATGCCA---TGGCCAGGGACAG-CACACA i calJac3.chr14 C 0 I 562 s saiBol1.JH378218 3158528 90 - 7082604 GCG--AGGAGTCCCGAGACTGGCAAGCACACCT-GGAGTCCAC-AAAGCCACGCAATTCAGC-GGCAGGG--ATGCCA---CGGCCAGGGACAG-CACACG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 644673 90 + 5243153 GCG--AGGAGTCCCGAGCCTGGCAGGCACACCT-GGAGACCAC-AAAGCCACACAGTTCAGC-AGCAGGG--ATGCCA---CAGCCAGGGACAG-CACACG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3386942 90 + 7587287 GCA--AGGAGTCCCGAGCCTGGCAAGCACACCT-GGAGTCCAC-AAAGCCACGCAGTTCAGC-GGCAGGG--ATGCCA---CAGCCAGGGACAG-CACACG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2588449 82 + 5252280 GTGACAGGAGTCCTG-------------------AGGGCCTGTCGCTCTCACGCTGCACAGCTAGCAGGACTCTGCCATGCCAGACTGGGTCAGACTCACA i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91449321 123 - 120129022 I e dasNov3.JH580157 681656 503 + 2232271 I a score=130646.000000 s hg38.chr2_KI270769v1_alt 110249 14 + 120616 GGCCGGGCCTGGGG s panTro5.chr2A 3574024 14 + 111504155 GGCCAGGCCTGGGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3433155 14 + 114371477 GGCCAGGCCTGGGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 311718 14 + 637652 GGCCAGGCCTGGAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107346 14 + 81552678 GCCCAGGCTTGGGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371121 14 + 108979918 GGCCAGGCTTGGGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5083250 14 - 111193037 GGCCAGGCTTGGGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474862 14 + 3644372 GGCCAGGCTTGGGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431489 14 - 10304083 GGCCAGGCTTGGGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3532311 14 - 107702431 GGCCAGGCTTGGGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063118 14 + 1565135 GGCCAGGCTTGGGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425470 14 - 13651311 GGCCAGGCTTGGGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512100 14 - 108792865 GGCCAGGTGTGGGG i calJac3.chr14 I 562 C 0 s saiBol1.JH378218 3158618 14 - 7082604 GGCCAGGCGTGGGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 644763 14 + 5243153 GGCCAGGCATGGGG i cebCap1.NW_016107454v1 C 0 I 699 s aotNan1.NW_018509326v1 3387032 14 + 7587287 GGCCAGGCGTGGGG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2588531 3 + 5252280 ---CAC-------- i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91449321 123 - 120129022 I e dasNov3.JH580157 681656 503 + 2232271 I a score=6392.000000 s hg38.chr2_KI270769v1_alt 110263 1 + 120616 A s panTro5.chr2A 3574038 1 + 111504155 A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3433169 1 + 114371477 A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 311732 1 + 637652 A i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107360 1 + 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371135 1 + 108979918 A i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5083264 1 - 111193037 A i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474876 1 + 3644372 A i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431503 1 - 10304083 A i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3532325 1 - 107702431 A i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063132 1 + 1565135 A i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425484 1 - 13651311 A i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512114 1 - 108792865 G i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158632 1 - 7082604 G i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3387046 1 + 7587287 A i aotNan1.NW_018509326v1 C 0 I 674 e mm10.chr12 91449321 123 - 120129022 I e dasNov3.JH580157 681656 503 + 2232271 I e otoGar3.GL873658 2588534 0 + 5252280 C e cebCap1.NW_016107454v1 644777 699 + 5243153 I a score=-1200.000000 s hg38.chr2_KI270769v1_alt 110264 1 + 120616 G s panTro5.chr2A 3574039 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3433170 1 + 114371477 G i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 311733 1 + 637652 G i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107361 1 + 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371136 1 + 108979918 C i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5083265 1 - 111193037 C i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474877 1 + 3644372 C i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431504 1 - 10304083 C i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3532326 1 - 107702431 G i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063133 1 + 1565135 C i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425485 1 - 13651311 G i colAng1.NW_012118821v1 C 0 C 0 s cebCap1.NW_016107454v1 645476 1 + 5243153 G i cebCap1.NW_016107454v1 I 699 C 0 e mm10.chr12 91449321 123 - 120129022 I e saiBol1.JH378218 3158633 0 - 7082604 C e dasNov3.JH580157 681656 503 + 2232271 I e otoGar3.GL873658 2588534 0 + 5252280 C e aotNan1.NW_018509326v1 3387047 674 + 7587287 I e calJac3.chr14 3512115 0 - 108792865 C a score=100428.000000 s hg38.chr2_KI270769v1_alt 110265 9 + 120616 AAAGCACAG s panTro5.chr2A 3574040 9 + 111504155 AAAGCACAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3433171 9 + 114371477 AAAGCACAG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 311734 9 + 637652 AAAGCACAG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107362 9 + 81552678 AAAGCACAG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371137 9 + 108979918 AAAGCACAG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5083266 9 - 111193037 AAAGCACAG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474878 9 + 3644372 AAAGCACAG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431505 9 - 10304083 AAAGCACAG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3532327 9 - 107702431 AAAGCACAG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063134 9 + 1565135 AAAGCACAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425486 9 - 13651311 AAAGCACAG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512115 9 - 108792865 AAAGCACAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158633 8 - 7082604 -AAGCACGG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 645477 9 + 5243153 AAAGCACGG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3387721 9 + 7587287 AAAGCACAG i aotNan1.NW_018509326v1 I 674 C 0 s otoGar3.GL873658 2588534 7 + 5252280 -AAGCACA- i otoGar3.GL873658 C 0 C 0 e mm10.chr12 91449321 123 - 120129022 I e dasNov3.JH580157 681656 503 + 2232271 I a score=26399.000000 s hg38.chr2_KI270769v1_alt 110274 2 + 120616 CA s panTro5.chr2A 3574049 2 + 111504155 CG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3433180 2 + 114371477 CG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 311743 2 + 637652 CG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107371 2 + 81552678 CG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371146 2 + 108979918 CG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5083275 2 - 111193037 CG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474887 2 + 3644372 CG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431514 2 - 10304083 CG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3532336 2 - 107702431 CG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063143 2 + 1565135 CG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425495 2 - 13651311 CG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512124 2 - 108792865 CG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158641 2 - 7082604 CG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 645486 2 + 5243153 CG i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3387730 2 + 7587287 CG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2588541 2 + 5252280 CG i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91449444 2 - 120129022 CA i mm10.chr12 I 123 C 0 e dasNov3.JH580157 681656 503 + 2232271 I a score=3234405.000000 s hg38.chr2_KI270769v1_alt 110276 242 + 120616 CTCCC-ACCTTCTCGTCCACCGTGAAGCGGTGATAGATCCCCGCGGGGAGCGTCACCATGTCTCCCTTCTCCATGAAGATCCGGATCCACTGGTCCTCCTTGTCCCTCACATCGAAGTACCCACTGCCATCCAGGATGTAGCGGATCTCATCGTCCAAGTGCAAATGCTCCTCGTAGAACATCTTAATCTAGTGCAGAAGGAACA-TTCCTG-TGAGTCTACCAGAGAC-CTGTCACGCAAGCTCA s panTro5.chr2A 3574051 242 + 111504155 CTCCC-ACCTTCTCGTCCACCGTGAAGCGGTGATAGATCCCCGCGGGGAGCGTTATCATGTCTCCCTTCTCCATGAAGATCCGGATCCACTGGTCCTCCTTGTCTCTCACATCGAAGTACCCACTGCCATCCAGGATGTAGCGGATCTCATCGTCCAAGTGCAAATGCTCCTCGTAGAACATCTTAATCTAGTGCAGAAGGAACA-TTCCTG-TGAGTCTACCAGAGAC-CTGTCACGCAAGCTCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3433182 242 + 114371477 CTCCC-ACCTTCTCGTCCACCGTGAAGCGGTGATAGATCCCCGCGGGGAGCGTTATCATGTCTCCCTTCTCCATGAAGATCCGGATCCACTGGTCCTCCTTGTCTCTCACATCGAAGTACCCACTGCCATCCAGGATGTAGCGGATCTCATCGTCCAAGTGCAAATGCTCCTCGTAGAACATCTTAATCTAGTGCAGAAGGAACA-TTCCTG-TGAGTCTACCAGAGAC-CTGTCACCCAAGCTCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 311745 242 + 637652 CTCCC-ACCTTCTCATCCACCGTGAAGCGGTGATAGATCCCCGCGGGGAGCGTTATCATGTCTCCCTTCTCCATGAAGATCCGGATCCACTGGTCCTCCTTGTCCCTCACATCGAAGTACCCACTGCCATCCAGGATGTAGCGGATCTCATCGTCCAAGTGCAAATGCTCCTCGTAGAACATCTTAATCTAGTGCAGAAGGAACA-TTCCTG-TGAGTCTACCAGAGAC-CTGTCACGCAAGCTCG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107373 242 + 81552678 CTCCC-ACCTTTTCGTCCACTGTGAAGCGGTGATAGATCCCTGCAGGGAGCGTTATCATGTCTCCCTTCTCCATGAAGATCCGGATCCACTTGTCCTCCTTGTCCCTCACGTCGAAGTACCCACTGCCATCCAGGATGTAGCGGATCTCATCGTCCAAGTGCAAATGCTCCTCGTAAAACATCTTAATCTAGTGCAGAAGGAACA-TTCCTG-TGAGTCTACCAGAGAC-CTGTCACTCAAGACCG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371148 242 + 108979918 CTCCC-ACCTTTTCGTCCACGGTGAAGCGGTGATAGATCCCTGCGGGGAGCGTTATCATGTCTCCCTTCTCCATGAAGATCCGGATCCACTTGTCCTCCTTGTCCCTCACGTCGAAGTACCCGCTGCCGTCCAGGATGTAGCGGATCTCATCGTCCAAGTGCAAATGCTCCTCGTAAAACATCTTAATCTAGTGCAGGACGAACA-TTCCTG-TGAGTCTACCGGAGAC-CTGTCACGCAAGCTCG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5083277 242 - 111193037 CTCCC-ACCTTTTCGTCCACGGTGAAGCGGTGATAGATCCCTGCGGGGAGCGTTATCATGTCTCCCTTCTCCATGAAGATCCGGATCCACTTGTCCTCCTTGTCCCTCACGTCGAAGTACCCGCTGCCGTCCAGGATGTAGCGGATCTCATCGTCCAAGTGCAGATGCTCCTCGTAAAACATCTTAATCTAGTGCAGGACGAACA-TTCCTG-TGAGTCTACCGGAGAC-CTGTCACGCAAGCTCG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3474889 244 + 3644372 CTCCCTACCTTTTCGTCCACGGTGAAGCGGTGATAGATCCCTGCGGGGAGCGTTATCATGTCTCCCTTCTCCATGAAGATCCGGATCCACTTGTCCTCCTTGTCCCTCACGTCGAAGTACCCGCTGCCGTCCAGGATGTAGCGGATCTCATCGTCCAAGTGCAAATGCTCCTCGTAAAACATCTTAATCTAGTGCAGGACGAACATTTCCTG-TGAGTCTACCGGAGAC-CTGTCACGCAAGCTCG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431516 242 - 10304083 CTCCC-ACCTTTTCGTCCACGGTGAAGCGGTGATAGATCCCTGCGGGGAGCGTTATCATGTCTCCCTTCTCCATGAAGATCCGGATCCACTTGTCCTCCTTGTCCCTCACGTCGAAGTACCCGCTGCCGTCCAGGATGTAGCGGATCTCATCGTCCAAGTGCAAATGCTCCTCGTAAAACATCTTAATCTAGTGCAGGACGAACA-TTCCTG-TGAGTCTACCGGAGAC-CTGTCACGCAAGCTCG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3532338 242 - 107702431 CTCCC-ACCTTTTCGTCCACGGTGAAGCGGTGATAGATCCCTGCGGGGAGCGTTATCATGTCTCCCTTCTCCATGAAGATCCGGATCCACTTGTCCTCCTTGTCCCTCACGTCGAAGTACCCGCTGCCGTCCAGGATGTAGCGGATCTCATCGTCCAAGTGCAAATGCTCCTCGTAAAACATCTTAATCTAGTGCAGGAGGAACA-TTCCTG-TGAGTCTACCTGAGAC-CTGTCACGCAAGCTCG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063145 242 + 1565135 CTCCC-ACCTTTTCGTCCACGGTGAAGCGGTGATAGATCCCTGCGGGGAGCGTTATCATGTCTCCCTTCTCCATGAAGATCCGGATCCACTTGTCCTCCTTGTCCCTCACGTCGAAGTACCCGCTGCCGTCCAGGATGTAGCGGATCTCATCGTCCAAGTGCAAATGCTCCTCGTAAAACATCTTAATCTAGTGCAGGACGAACA-TTCCTG-TGAGTCTACCAGAGAC-CTGTCACGCAAGCTCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425497 228 - 13651311 CTCCC-ACCTTTTCGTCCACAGTGAAGCGGTGATAGATCCCGGCGGGGAGCGTTATCATGTCTCCCTTCTCCATGAAGATCCGGATCCACTTGTCCTCCTTGTCCCTCACGTCGAAGTACCCGCTGCCGTCCAGGATGTAGCGGATCTCATCGTCCAAGTGCAAATGCTCCTCGTAAAACATCTTAATCTAGTGCAGGAGGAACA-TTCCTG-TGAGTCTACCGGCAG---------------TCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512126 242 - 108792865 TACCC-ACCTTCTCGTCCACTGTGAAGCGGTGGTAGATCCCCGCGGGGAGCGTGATCATGTCTCCCTTCTCCATGAAGATCCGGATCCATTTGTCCTCCTTGTCCCTCACGTCGAAGTACCCACTGCCGTCCAGGATGTAGCGGATCTCATCGTCCAGGTGCAAATGTTCCTCGTAAAACATCTTAATCTAGCCCAGGAGGGACA-TTTCTG-TGAGTCTACCGGAGAC-CCCTCACACAAGCTAG i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158643 242 - 7082604 CGCCC-ACCTTCTCGTCCACGGTGAAGCGGTGGTAAATCCCCGCGGGGAGCGTGATCATGTCTCCCTTCTCCATGAAGATCCGGATCCATCTGTCCTCCTTGTCCCTCACATCGAAGTACCCACTGCCGTCCAGGATGTAGCGGATCTCGTCGTCCAGGTGCAAATGTTCCTCGTAAAACATCTTTATCTAGCCCAGGAGGGACA-TTTCTG-TGAGTCTACCGGAGAC-CCGTCACACAAGCCAG i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 645488 242 + 5243153 CGCCC-ACCTTCTCATCCACTGTGAAGCGGTGGTAGATCCCCGCGGGGAGCGTGATCATATCTCCCTTCTCCATGAAGATCCGGATCCATTTGTCCTCCTTGTCCCTCACGTCGAAGTACCCGCTGCCGTCCAGGATATAGCGGATCTCATCATCCAGGTGCAAATGTTCCTCGTAAAACATCTTAATCTAGCCCAGGGGGGACA-TTTCTG-TGAGTCTACTGGAGAC-CCGTCACACAAGCTAT i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3387732 242 + 7587287 CACCC-ACCTTCTCGTCCACCGTGAAGCGGTGGTAGATCCCCGCGGGGAGCGTGATCATGTCTCCCTTCTCCATGAAGATCCGGATCCATTTGTCCTCCTTGTCCCTCACGTCGAAGTACCCACTGCCGTCCAGGATGTAGCGGATCTCGTCATCCAGGTGCAAATGTTCCTCGTAAAACATCTTAATCTAGCCCAGGAGGGACA-GTTCTG-TGAGTCTACAGGACAC-CCGTCACACAAGCTAG i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2588543 240 + 5252280 CTCCC-ACCTGCTCGTCCACTGTGAAGCGGTGATAGATCCCCGCGGGGAGCGTGATCATGTCCCCTTTCTCCATGTGGATCCGGATCCATTTGTCCTCTGCGTCGCGTACGTCGAAGTACCCGCTGCCGTCCAGGATGTAGCGGATCTCATCGTCCAAGTGTAAGTGCTCCTCGTAAAACATCTTAATCT-GTGCAGGAGGGACA---CCTGACTAGTCCACTGCAGAC-CAACCCCACATATTCA i otoGar3.GL873658 C 0 C 0 s mm10.chr12 91449446 239 - 120129022 CTCTC-ACCTTCTCGTCCAGTGTGAAGCGGTGATAGATGCCGGCAGGAAGAGTAATCATGTCCCCCTTCTCCATGGAAATCCGGATCCACTTGTCCTCCTTGTCCCTGACATCGAAGTACCCACTACCCTCCAGGATGTAGCGGATCTCCTCATCCAGATGCAGATGTTCCTCAAAGAACATCTTGATCTAGTGCAAGGGGGA-A---CCTG-TGAGTTTCCTGGAGAC-CGATCACACAGACCCA i mm10.chr12 C 0 N 0 s dasNov3.JH580157 682159 243 + 2232271 ACCCT-ACCTTTTCATCCAGTGTGAAACGGTGATAAATTCCTGCAGGAAGTGTTATCATGTCTCCTTTCTCCATGAAAATCCGGATCCACTTGTCCTCTTTATCCCTTACATCAAAATACCCACTTCCATCCAAGATATATCGAATTTCATCATCCAAGTGTAAATGTTCTTCATAAAACATTTTAATCTAGAGTAAGAGGGAAA-TTTCTA-TAAGTCTGCTAGAGACAATATCATACAAATTCA i dasNov3.JH580157 I 503 C 0 a score=1655543.000000 s hg38.chr2_KI270769v1_alt 110518 162 + 120616 CACCCACCCACTCAGCAGCCTGAGCCTT-TGGTGGGCCAGAGCTGAGGTGAATGGGACTTCTCTCCATAAAAATG-AAACTACACTTGCTAAGAATTATTTTCCTAAC-AGTACAAGGG--CCAGAGCTAGAATATTTTATGAAACCTGTCAACAAATGGGCAGTAA s panTro5.chr2A 3574293 163 + 111504155 CATCCACCCACTCAGCAGCCTGAGCTTT-TGGTGGGCCAGAGCTGAGGTGAATGGGACTTCTCTCCATAAAAATGAAAACTACACTTGCTAAGAATTATTTTCCTAAC-AGTATAAGGG--CCAGAGCTAGAATATTTTATGAAACCTGTCAACAAATGAGCAGTAA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3433424 163 + 114371477 CATCCACCCACTCAGCAGCCTGAGCTTT-TGGTGGGCCAGAGCTGAGGTGAATGGGACTTCTCTCCATAAAAATGAAAACTACACTTGCTAAGAATTATTTTCCTAAC-AGTATAAGGG--CCAGAGCTAGAATATTTTATGAAACCTGTCAACAAATGAGCAGTAA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 311987 163 + 637652 CGCCCACCCACTCAGCAGCCTGAGCCTT-TGGTGGGCCAGAGCTGAGATGAATGGGACTTCTCTCCATAAAAATGAAAACTACACTTGCTAAGAATTATTTTCCTAAC-AGTATAAGGG--CCAGAGCTAGAACATTTTATGAAACCTGTCAACAAATGGGCAGTAA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107615 163 + 81552678 CACCCACCCACTCAGCAGACTGAGCTTT-CGGTGGGCCAGAGCTGAGGTGAATGGTATTTCTCTCCATAAAAATGAAAACTACACTTGCTAAGAATTATTTTCCTAAC-AGTTTAAGGG--CCACAGCTGGAATAGTTTATGAAACCTGTCAACAAATGGGCAGTAA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371390 163 + 108979918 CACCTGCCCACTCAGCAGCCTGAGCCTC-TGGTGGGTCAGAACTCAGGTGAATGGGATTTCTCTCCATAAAAATGAAAACTACACTTGCTAAGAATTATTTTCCTAAC-AGTATAAGGG--CCAGAGCTAGAATATTTTATGAAACCTGTCAACAAATGGGCAGTAA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5083519 163 - 111193037 CACCTGCCCACTCAGCAGCCTGAGCCTC-TGGTGGGTCAGAACTCAGGTGAATGGGATTTCTCTCCATAAAAATGAAAACTACACTTGCTAAGAATTATTTTCCTAAC-AGTATAAGGG--CCAGAGCTAGAATATTTTATGAAACCTGTCAACAAATGGGCAGTAA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3475133 163 + 3644372 CACCTGCCCACTCAGCAGCCTGAGCCTC-TGGTGGGTCAGAACTCAGGTGAATGGGATTTCTCTCCATAAAAATGAAAACTACACTTGCTAAGAATTATTTTCCTAAC-AGTATAAGGG--CCAGAGCTAGAATATTTTATGAAACCTGTCAACAAATGGGCAGTAA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431758 163 - 10304083 CACCTGCCCACTCAGCAGCCTGAGCCTC-TGGTGGGTCAGAACTCAGGTGAATGGGATTTCTCTCCATAAAAATGAAAACTACACTTGCTAAGAATTATTCTCCTAAC-AGTATAAGGG--CCAGAGCTAGAATATTTTATGAAACCTGTCAACAAATGGGCAGTAA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3532580 163 - 107702431 CACCTGCCCACTCAGCAGCCTGAGCCTC-TGGTGGGTCAGAACTCAGGTGAATGGGATTTCTCTCCATAAAAATGAAAACTACACTTGCTAAGAATTATTTTCCTAAC-AGTACAAGGA--CCAGAGCTAGAATATTTTATGAAACCTGTCAACAAATGGGCAGTCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063387 164 + 1565135 CACCTGCCCACTCAGCAGCCTGAGCCTCTTGGTGGGTCAGAACTCAGGTGAATGGGATTTCTCTCCATAAAAATGAAAACTACACTTGCTAAGAATTATTTTCCTAAC-AGTATAAGGG--CCAGAGCTAGAATATTTTATGAAACCTGTCAACAAATGGGCAGTAA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425725 162 - 13651311 CACCTGCCCACTCAGCAG-CTGAGCTTT-TGGTGGGTCAGAACTCAGGTGAATGGGATTTCTCTCCATAAAAATGAAAACTACACTTGCTAAGAATTATTTTCCTAAC-AGTATAAGGG--CCAGAGCTAGAATATTTTATGAAACCTGTCAACAAATGGGCAGTAA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512368 164 - 108792865 CACCCACCCACTCAGCAGCCTGAGCCCT-CGGTGGGCCAGGACTGCGGAGAATGGAACTTCTCTCCATCAAAATGAAAACTACACTTGCTAAGAATTATTTTCCTGACAAGAATAAGGG--CCAGAGCTGGAATATTTTATGAAGCGTGTCAACAAAAGGGCAGTGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3158885 164 - 7082604 CACCCACCCACTCAGCAGCCTGAGCCTT-CGGTGGGCCAGGACTGCGGAGAACAGAACTTCTCTCCATCAAAATGAAAACTCCCCTTGCTAAGAATTATTTTCCTAACAAGTAGAAGGG--CCATAGCTGGAATATTTTGTGAAGCTGGTCAACAAAAGGGCAGTAA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 645730 164 + 5243153 CACCCACCCACTCAGCGGCCTGAGCCTC-CAGTGGGCCAGGACTGCGGAGAACGGAACTTCTCTCCATCAAAATGAAAATTACACTTGCTAAGAATTATTTTCCTAACGAGTATAAGGG--CCAGAGCTGGAATATTTTGTGAAGCCGGTCAACAAAAGGGCAGTAA i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3387974 163 + 7587287 CACCCACCCGCTCAGCAGCCTGAGCCTT-CGGTGGGCCAGGACTGCAGAGAATGGAACTTCTCTCCATCAAAATGAAAACTACACTTGCTAAGAATTATTCTCCTAACAAGTACAAGGG--CCAGAGCTGGACTATTTTATGAAGCCTGTCAACAAAAGGG-AGTAA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2588783 146 + 5252280 CACAGACACACCCAGTAG-CTGAGTGTT-CAACAGACCGGAAATGAGGCAGAAAGGCTTCCTCTCTATAAAAATGAAAACTGCAC-TGCTGAACACTGTCTCTGTAGTAAGTCTAAGGG--GTGGAGCGAGGA----------------TCAGCAGAGGGACAGTGA i otoGar3.GL873658 C 0 C 0 s dasNov3.JH580157 682402 111 + 2232271 CCCAGACCCACCCACCAGCCTAAATCTT-AAATAGACCAGA-------------------------------------------------------TATTATTATAATACGTAAAGGAGTTCAGGAGCTAGAGTATTTTATGAAACCTAACAACATGGTAGTGGCAA i dasNov3.JH580157 C 0 C 0 a score=286136.000000 s hg38.chr2_KI270769v1_alt 110680 37 + 120616 CTGAA--AGTGAACAGACCTGAAGCAAAGgttctgaaca s panTro5.chr2A 3574456 37 + 111504155 CTGAA--AGTGAACAGACCTGCAGCAAAGGTTCTGAACA i panTro5.chr2A C 0 I 172 s panPan2.chr2A 3433587 37 + 114371477 CTGAA--AGTGAACAGACCTGCAGCAAAGGTTCTGAACA i panPan2.chr2A C 0 I 172 s gorGor5.CYUI01015435v1 312150 37 + 637652 CTGAA--AGTGAACAGACCTGAAGCAAAGGTTCTCAACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107778 37 + 81552678 CTGAA--AGTGAACAGACCTGCAGCAAAGgttctgaaca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371553 37 + 108979918 CTGAA--AGTGAACAGACCTGCAGCAGAGGTTCTGAACA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5083682 37 - 111193037 CTGAA--AGTGAACAGACCTGCAGCAGAGGTTCTGAACA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3475296 37 + 3644372 CTGAA--AGTGAACAGACCTGCAGCAGAGGTTCTGAACA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431921 37 - 10304083 CTGAA--AGTGAACAGACCTGCAGCAAAGGTTCTGAACA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3532743 37 - 107702431 CTGAA--AGTGAACAGACCTGCAGCAAAGGTTCTGAACA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063551 37 + 1565135 CTGAA--AGTGAACAGACCTCCAGCAAAGGTTCTGAACA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425887 37 - 13651311 CTGAA--AGTGAACAGACCTGCAGCAAAGgttctgaaca i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512532 38 - 108792865 GTGAAGGAGTGAAGAGacgtgcggcag-ggctccgcaca i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3159049 38 - 7082604 CTGAAGGAGTGAAGAGACGCGTAGCAG-Ggctctgcaca i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 645894 38 + 5243153 CTGAAGGAGTGAAGAAACGTGTAgcag-cgctctgcaca i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3388137 38 + 7587287 CTGAAGGAGGGAAGAGACGTGTAgcag-ggctctgcaca i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2588929 34 + 5252280 CACAA--ATTG--CAGCACGGCCGGCAACGCTCCAAAC- i otoGar3.GL873658 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C a score=86890.000000 s hg38.chr2_KI270769v1_alt 110717 9 + 120616 cttcacaca s panTro5.chr2A 3574665 9 + 111504155 cttcacaca i panTro5.chr2A I 172 C 0 s panPan2.chr2A 3433796 9 + 114371477 cttcacaca i panPan2.chr2A I 172 C 0 s gorGor5.CYUI01015435v1 312187 9 + 637652 CTTCACACA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107815 9 + 81552678 cttcacaca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371590 9 + 108979918 CTTCACACG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5083719 9 - 111193037 CTTCACACG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3475333 9 + 3644372 CTTCACACG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3431958 9 - 10304083 CTTCACACG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3532780 9 - 107702431 CTTCACACG i chlSab2.chr14 C 0 I 294 s manLeu1.NW_012104432v1 1063588 9 + 1565135 CTTCACACG i manLeu1.NW_012104432v1 C 0 I 86 s colAng1.NW_012118821v1 3425924 9 - 13651311 cttcacacg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512570 9 - 108792865 cttcacaag i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3159087 9 - 7082604 cttcccacg i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 645932 9 + 5243153 catcacacg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3388175 9 + 7587287 cttcacacg i aotNan1.NW_018509326v1 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e otoGar3.GL873658 2588963 0 + 5252280 C a score=189615.000000 s hg38.chr2_KI270769v1_alt 110726 22 + 120616 ggccaactcacccaacccgcac s panTro5.chr2A 3574674 22 + 111504155 ggccaactcacccaacccacac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3433805 22 + 114371477 ggccaactcacccaacccacac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 312196 22 + 637652 GGCCAACTCACCCAACCCGCAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107824 22 + 81552678 ggccaactcacccaacctgcac i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371599 22 + 108979918 GGCCAACTCACCCAACACGCAC i rheMac8.chr13 C 0 I 171 s macFas5.chr13 5083728 22 - 111193037 GGCCAACTCACCCAACACGCAC i macFas5.chr13 C 0 I 128 s macNem1.NW_012011978v1 3475342 22 + 3644372 GGCCAACTCACCCAACACGCAC i macNem1.NW_012011978v1 C 0 I 214 s cerAty1.NW_012000820v1 3431967 22 - 10304083 GGCCAACTCACCCAACACGCAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3533083 22 - 107702431 ggccaactcacccaacacgcat i chlSab2.chr14 I 294 C 0 s manLeu1.NW_012104432v1 1063683 22 + 1565135 gggcaactcacccaacacgcac i manLeu1.NW_012104432v1 I 86 C 0 s colAng1.NW_012118821v1 3425933 22 - 13651311 ggccaactcgcccaacacgcac i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512579 20 - 108792865 ggctgacc--ccaagcccgcac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3159096 22 - 7082604 gactgactcaccaagcccgcac i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 645941 22 + 5243153 ggctgactcagcaagcccgcac i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3388184 22 + 7587287 ggctgactcaccaagcccgcac i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2588963 17 + 5252280 -----ATCCACCAAGGGctcac i otoGar3.GL873658 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C a score=35897.000000 s hg38.chr2_KI270769v1_alt 110748 8 + 120616 g-------------------------------------------------------------------------------------gccccac s panTro5.chr2A 3574696 8 + 111504155 g-------------------------------------------------------------------------------------gccccac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3433827 8 + 114371477 g-------------------------------------------------------------------------------------gccccac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 312218 93 + 637652 GACCCCACGAGGCTTCACACAGGCCAACTCACCCAACCCGCATGGCCCACGAGgcttcacacaggccaactcacccaacccgcacagccccac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107846 8 + 81552678 g-------------------------------------------------------------------------------------gccccac i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371792 8 + 108979918 g-------------------------------------------------------------------------------------gccccac i rheMac8.chr13 I 171 C 0 s macFas5.chr13 5083878 8 - 111193037 G-------------------------------------------------------------------------------------Gccccac i macFas5.chr13 I 128 C 0 s macNem1.NW_012011978v1 3475578 8 + 3644372 g-------------------------------------------------------------------------------------gccccac i macNem1.NW_012011978v1 I 214 C 0 s cerAty1.NW_012000820v1 3431989 8 - 10304083 G-------------------------------------------------------------------------------------GCCCCAC i cerAty1.NW_012000820v1 C 0 I 258 s chlSab2.chr14 3533105 8 - 107702431 g-------------------------------------------------------------------------------------gccccac i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063705 8 + 1565135 g-------------------------------------------------------------------------------------gccccac i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425955 8 - 13651311 g-------------------------------------------------------------------------------------gccccac i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512599 8 - 108792865 g-------------------------------------------------------------------------------------gccccac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3159118 8 - 7082604 g-------------------------------------------------------------------------------------gccgtac i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 645963 8 + 5243153 g-------------------------------------------------------------------------------------gccccac i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3388206 8 + 7587287 g-------------------------------------------------------------------------------------gccccgc i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2588980 8 + 5252280 -------------------------------------------------------------------------------------agcacaat i otoGar3.GL873658 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C a score=1302607.000000 s hg38.chr2_KI270769v1_alt 110756 126 + 120616 gaggtggctg--ctctatcagccccgttttacagatgtggaaatggtggcacagagaggctaagtcactggcccaacctcacacaacgagACTGCCCCAAAGACACCCTGGCCCCATGCTCACACCCA s panTro5.chr2A 3574704 126 + 111504155 gaggtggctg--ctctatcagccccgttttacagatgtggaaatggtggcacagagaggctaagtcactggcccaacctcacacaacgagACTGCCCCAAAGACACCCTGGCCCCATGCTCACACCCA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3433835 126 + 114371477 gaggtggctg--ctctatcagccccgttttacagatgtggaaatggtggcacagagaggctaagtcactggcccaacctcacacaacaagACTGCCCCAAAGACACCCTGGCCCCATGCTCACACCCA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 312311 125 + 637652 gaggtggctg--ctctatcagcccc-ttttacagatgtggaaatggtggcacagagaggctaagtcactggcccaacctcacacaacgagACTGCCCCAAAGACACCCTGGCCCCATGCTCACACCCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107854 126 + 81552678 gaggtggctg--ctccatcagccccattttacagatgcggaaatggtggcacagagaggcttagtcaccggcccaacctcacacgacGGGACTGCCCCAAAGACACCCTGGCCCCATGCTCACACCCA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371800 126 + 108979918 gaggtggctg--ctctgtcagccacattttacagatgcgggaatggtggcacagagaggctaagtcactggcccaacctcacacagcgagACTGCCCCAAAGACACCCTGGCCCCAGGCTCACACCCA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5083886 126 - 111193037 gaggtggctg--ctctgtcagccccattttacagatgcgggaatggtggcacagagaggctaagtcactggcccaacctcacacagcgagACTGCCCCAAAGACACCCTGGCCCCAGGCTCACACCCA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3475586 126 + 3644372 gaggtggctg--ctctgtcagccccattttacagatgcgggaatggtggcacagagaggctaagtcactggcccaacctcacacagcgagACTGCCCCAAAGACACCCTGGCCCCAGGCTCACACCCA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3432255 124 - 10304083 gaggtggctg--ctctgtcagccccattttacagatgcgggaatggtggcacagagaggct--gtcactggcccaacctcacacagtgagACTGCCCCAAAGACACCCTGGCCCCAGGCTCACACCCA i cerAty1.NW_012000820v1 I 258 C 0 s chlSab2.chr14 3533113 126 - 107702431 gaggtggctg--ctctgtcagccccattttacagatgcgggaatggtggcacagagaggctaagtcactggcccaacctcacacagcgagACTGCCCCAAAGACACCCCGACCCGAGGCTCACACCCA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063713 124 + 1565135 gaggtggctg--ctctgtcagccccattttacagatgcgggaatggtggcacagagaggct--gtcactggcccaacctcacacagcgagACTGCCCCAAAGACACCCTGGCCCCAGGCTCACACCCA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3425963 126 - 13651311 gaggtggctg--ctctgtcagccccattttacagatgtgggaatggtagcacagagaggctaagtcactggcccaacctcacacaCTGAGACTGCCCCAAAGACAGCCTGGCCCCAGGCTCACACCCA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512607 126 - 108792865 cacgcggctg--ctctgtcttccccagtggacagacgcaggaatggtggcacagagaagccaagtcactggcccaacctcacacagTGACACCGCCCCAAGGACACCCTGACCCCACGCTCACATGCA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3159126 125 - 7082604 caggcggctg--ctctgtcttccccgttgtacagacggaggaacagtggtacagaggagccaagtcactggcccaacctcacacagTGACACCGCCCCAAGGACA-CCTGACCCCATGCTCACACCCA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 645971 125 + 5243153 caggcggctg--ctctgtcttccccattgtacagacgcaggaacggtggcacagagaagccaagtcactggcccaacctcacacagTGACACCGCCCCAAGGACA-CCTGACCCCATGCTCACACCCA i cebCap1.NW_016107454v1 C 0 I 31 s aotNan1.NW_018509326v1 3388214 126 + 7587287 caggcggctg--ctctgtcttccccattgtacagacgcgggaacggtggcacagagaagccaagtcactggcccaacctcacacagTGACACCGCCCCAAGGACACCCTGACCCCATGCTCACACCCA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2588988 127 + 5252280 gaggcaggcactctctgccgtccccactctccagatgagagaatggtggcacagacaggccatgtcactggcccaacctcacccagtaagactgccccaaacacatgccagccc-aggtctacACCCA i otoGar3.GL873658 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C a score=314024.000000 s hg38.chr2_KI270769v1_alt 110882 44 + 120616 -CCCAGTGTGCTGCACACAGCAGTCATGAAATCACAACACACAGG s panTro5.chr2A 3574830 44 + 111504155 -CCCAGTGTGCTGCACACAGCAGTCATGAAATCACAACACACAAG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3433961 44 + 114371477 -CCCAGTGTGCTGCACACAGCAGTCATGAAATCACAACACACAGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 312436 44 + 637652 -CCCAGTGTGCTGCACACAGCAGTCATGAAATCACAACACACAGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3107980 44 + 81552678 -CCCAGTGTGCTGCACACAGCAGTCATGAAATCACAACACACAGG i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371926 44 + 108979918 -CCCAGTGTGCTGCACACAGCAGTCATGAAATCACAACACACAGG i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5084012 44 - 111193037 -CCCAGTGTGCTGCACACAGCAGTCATGAAATCACAACACACAGG i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3475712 44 + 3644372 -CCCAGTGTGCTGCACACAGCAGTCATGAAATCACAACACACAGG i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3432379 44 - 10304083 -CCCAGTGTGCTGCACACAGCAGTCATGAAATCACAACACACAGG i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3533239 44 - 107702431 -CCCAGTGTGCTGCACACAGCAGCCATGAAATCACAACACACAGG i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063837 44 + 1565135 -CCCAGTGTGCTGCACATAGCAGTCATGAAATCCCAACACACAGG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3426089 44 - 13651311 -CCCAGTGTGCTGCACACAGCAGTCATGAAATCACAACACACAGG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512733 31 - 108792865 --------------TCACGGCAGTCACGAAATCACAACATGAAGT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3159251 31 - 7082604 --------------TCACAGCAGTCATGAAATTCCAACATGAAGT i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3388340 31 + 7587287 --------------TCATGGCAGTCATGAAATTACAACATGAAGT i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2589115 36 + 5252280 CCCGGGTACACCGCACACAGCAAGCTC-----CACAGCGCA---- i otoGar3.GL873658 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646096 31 + 5243153 I a score=647655.000000 s hg38.chr2_KI270769v1_alt 110926 75 + 120616 GTGAGTGAGAAGCCAGTGGACATTGCAGGGAGGCAGGCACAGACTCCACAAGCATTTTCTATGTCTTCACA-TTGA s panTro5.chr2A 3574874 75 + 111504155 GTGAGTGAGAAGCCAGTGGACATTGCAGGGAGGCAGGCACAGACTCCACAAGCATTTTCTATGTCTTCACA-TTGA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3434005 75 + 114371477 GTGAGTGAGAAGCCAGTGGACATTGCAGGGAGGCAGGCACAGACTCCACAAGCATTTTCTATGTCTTCACA-TTGA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 312480 75 + 637652 GTGAGTGAGAAGCCAGTGGACATTGCAGGGAGGCAGGCACAGACTCCACAAGCATTTTCTATGTCTTCACA-TTGA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3108024 75 + 81552678 GTGAGTGAGAAGCCAGTGGACGTTGCACGGAGGCAGGCACAGACTCCACAAGCATTTTCTATGTCTTCACA-TTGA i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3371970 76 + 108979918 GTGAGTGAGAAGCCAGTGGACATTGCAGGGAAGCAGGCACAGACTCCACAAGCAACTTCTATTTCTTCACATTTGA i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5084056 76 - 111193037 GTGAGTGAGAAGCCAGTGGACATTGCAGGGAAGCAGGCACAGACTCCACAAGCAACTTCTATTTCTTCACATTTGA i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3475756 76 + 3644372 GTGAGTGAGAAGCCAGTGGACATTGCAGGGAAGCAGGCACAGACTCCACAAGCAACTTCTATTTCTTCACATTTGA i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3432423 76 - 10304083 GTGAGTGAGAAGCCAGTGGACATTGCAGGGAAGCAGGCACAGACTCCACAAGCACCTTCTATTTCTTCACATTTGA i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3533283 75 - 107702431 GTGAGTGAGAAG-CAGTGGACATTGCAGGGAAGCAGGCACAGACTCCACAAGCACCTTCTATTTCTTCACATTTGA i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063881 76 + 1565135 GTGAGTGAGAAGTCAGTGGACATTGCAGGGAAGCAGGCACAGACTCTACAAGCACCTTCTATTTCTTCACATTTGA i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3426133 75 - 13651311 GTGAATGAGAAGCCAGTGGACATTGCAGGGAAGCAGGCACAGACTCCACAAGCACTTTCTATTTCTTCACA-TTGA i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512764 75 - 108792865 GGGGGTGAGAAGCCAGGGGACGTTGCAGAGAGGAAGGCACACATTCCATGGGCGCTTTCTATCTCTTCATG-TTGA i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3159282 74 - 7082604 GTGGGTGAGAAGCC-GGGGGCGCTGCAGGGAGGCAGGCGCACATTCCACGGGCGCTTTCTGTCTCCCCACA-CTGA i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 646127 75 + 5243153 GTGGGTGAGAAGCCAGTGGGCACTGCAGGGAGGCAGGCGCACATTCCACGGGCGCTTTCTATCTCCCCACA-TTGA i cebCap1.NW_016107454v1 I 31 I 2961 s aotNan1.NW_018509326v1 3388371 75 + 7587287 GTGGGTGAGAAGCCAGGGGACGCTGCAGGGAGGCAGGCACACATTCCGCGGGCGCTTTCTATCTCCCCACA-TTGA i aotNan1.NW_018509326v1 C 0 C 0 s otoGar3.GL873658 2589151 46 + 5252280 ------------------GGCAATATAGCAAGACACTTCT---CTGTAGAAGGTTCTtttctttctt--------- i otoGar3.GL873658 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C a score=1109788.000000 s hg38.chr2_KI270769v1_alt 111001 140 + 120616 Cttttg----------tgta--ttttttttttt---aggtggagtctcgctctgttgcccaggctggagtgcagtggcacaatctcagctcactgcaacctccgcctccccgattcaagcgattctcgtg------cc-----tcccaagtagctgggattacagg s panTro5.chr2A 3574949 140 + 111504155 CTTCTG----------TGTA--Ctttttttttt---aggtggagtctcgctctgttgcccaggctggagtgcagtggcacaatctcagctcactgcaacctccgcctccccgattcaagcgattctcgtg------cc-----tcctaagtatctgggaatacagg i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3434080 140 + 114371477 Cttttg----------tgta--ctttttttttt---aggtggagtctcgctctgttgcccaggctggagtgcagtggcacaatctcagctcactgcaacctccgcctccccgattcaagcgattctcgtg------cc-----tcctaagtatctgggattacagg i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 312555 141 + 637652 Cttttg----------tgta-tttttttttttt---aggtggagtctcgctctgttgcccaggctggagtgcagtggcacaatctcagctcactgcaacctctacctcctcgattcaagcaattctcgtg------cc-----tcccaagtagctgggattacagg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3108099 134 + 81552678 CT--------------TGTA----ttttttttt---agatggagtctcgctctgttgcccaggctggagtgcagtggcacaatctcagctcactgcgacctctgcctcctcggttcaagcgatccttgtg------cc-----tcccaagtagctgggattacaga i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3372046 145 + 108979918 Cttttg----------tgtctttttttttttttttcagatggagtcttgctctgtcacccagcctggagtgcagtggtgcaatctcagttcactgcaacctccgcctcctcagttcaagtgattctcctg------cc-----tcccaagtagctgggattacagg i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5084132 145 - 111193037 Cttttg----------tgtctttttttttttttttcagatggagtcttgctctgtcacccaggctggagtgcagtggtgcaatctcagttcactgcaacctccgcctcctcagttcaagtgattctcctg------cc-----tcccaagtagctgggattacagg i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3475832 145 + 3644372 CTTGTG----------TGTCttttttttttttcttcagatggagtcttgctctgtcacccaggctggagtgcagtggtgcaatctcagttcactgcaacctccgcctcctcagttcaagtgattctcctg------cc-----tcccaagtagctgggattacagg i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3432499 142 - 10304083 Cttttg----------tctcttttttttttttt---agatggagtcttgctctgtcacccaggctggagtgcagtggtgcaatctcagttcactgcaacctccacctcctcagttcatgtgattctcctg------cc-----tcccaagtagatgggaatacagg i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3533358 141 - 107702431 Cttttg----------tctc-tttttttttttt---agatggagtcttgctctgtcacccaggctggagtgcagtggtgcaatctcagttcactgcaacctccgccacctcagttcaagtgattctcctg------cc-----tcccaagtagctgggattacagg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1063957 142 + 1565135 Cttttg----------tctcttttttttttttt---agatggagtcttgctctgtcacccaggctggagtgcagtggtgcaatctcagttcactgcaacctccacctcctcagttcaagtgattctcctg------cc-----tcccaagtagctgggattacagg i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3426208 144 - 13651311 Cttttg----------tgtcttttttttttttttt-agatggagtcttgctctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctccacctcctcagttcaagtgattctcctg------cc-----tcccaagtagctgggattacagg i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512839 159 - 108792865 -ATTTGTGTAtttcttttttctttttttttttttg-agatggagctgtgctctctcgcccaggctggagtgctgtggtgcgatctcggctcactgcgacctccgcctgctcagctcaagtgattcttgtgcctcagcc-----tccagagtggctgggattacagg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3159356 149 - 7082604 -Atttg----------tctttcttttttttttctg-agatggaattgtgccctgtcgcccaggctggagtgctgtggtgtgatcttggctcactgtgacctccgcctcctcagttcaagtgattcttgtgcctcaacc-----tcccgagtagctgggattacagg i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3388446 145 + 7587287 -ATTTG--------------CGTCttttttttttg-agatggagttgtgctctgtcgcccaggctggagtgctgtggtgtgatctcggctcactgtgacctccacctcctcagttcaagtgattctcgtgcctcagcc-----tcccaagtagctgggattacagg i aotNan1.NW_018509326v1 C 0 I 2644 s otoGar3.GL873658 2589197 127 + 5252280 ---ttg----------tttttgttttttttttt--------gag----gcactctcacactgggttgagtgctg--------tcacagctcacaacaacctcaaactcctgggttcaagcaatcctcttg------cctcagttcctgaatagctggaactacagg i otoGar3.GL873658 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I a score=250046.000000 s hg38.chr2_KI270769v1_alt 111141 35 + 120616 tacctaccactatacccag-ctaatttttgtattct s panTro5.chr2A 3575089 35 + 111504155 tgcctgccactatgcccag-ctaatttttgtatttt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3434220 35 + 114371477 tgcctgccactatgcccag-ctaatttttgtatttt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 312696 35 + 637652 tgcctgccactatgcccag-ctaatttttgtatttt i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3108233 35 + 81552678 tgcctgccactatgcccgg-ctaatttttgtatttt i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3372191 35 + 108979918 cgcctgccaccatgcccag-ctaatttttgtatttt i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5084277 35 - 111193037 cgcctgccaccatgcccag-ctaatttttgtatttt i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3475977 35 + 3644372 cgcctgccaccatgcccag-ctaatttttgtatttt i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3432641 35 - 10304083 catccgccaccatgcccag-ctaatttttgtatttt i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3533499 35 - 107702431 cgcccgccaccacgcccag-ctaatttttgtatttt i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1064099 35 + 1565135 cacctgccaccatgcccag-ctaatttttgtatttt i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3426352 35 - 13651311 cgcctgccaccatgcccag-ctaatttttgtatttt i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3512998 36 - 108792865 cgtgagccaccatgcctggtctgacttttgtgtctt i calJac3.chr14 C 0 I 3147 s saiBol1.JH378218 3159505 36 - 7082604 cgtgagccaccatgcctggtctgacttttgtgtctt i saiBol1.JH378218 C 0 I 2151 s otoGar3.GL873658 2589324 34 + 5252280 tgtccaccaccacacc-ac-ctagtttttccatttt i otoGar3.GL873658 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I a score=695102.000000 s hg38.chr2_KI270769v1_alt 111176 115 + 120616 cagtagagatggggtttcaacatgttggccaggctggtctcaaactcctgacctcaggtcatccacctgcctcggcctcccacagtgctgggattccaggtggaagccaccacgc s panTro5.chr2A 3575124 115 + 111504155 tagtagagatggggtttcaacatgttggccaggctggtctcaaactcctgacctcaggtcatccgcctgcctcggcctcccacagtgctgggattccaggtggaagccaccacac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3434255 115 + 114371477 tagtagagatggggtttcaacatgttggccaggctggtctcaaactcctgacctcaggtcatccacctgcctcggcctcccacagtgctgggattccaggtggaagccaccacac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 312731 115 + 637652 ttgtagagatggggtttcaacatgttggccaggctggtctcaaactcctgacctcaggtcatccacctgcctcggcctcccacagtgctgggattccaggtggaagccaccacgc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3108268 115 + 81552678 tagtagagatggggtttcaacatgttggccaggctgatctcgaactcctgacctcaggtcatccacctgcctcagcctcccacagtgctgggattccaggcggaagccgccacgc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3372226 109 + 108979918 tagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgac------tcattcacccgcctcggcctcccacagtgctgggattccaggcagaagccaccacac i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5084312 109 - 111193037 tagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgac------tcattcacccgcctcggcctcccacagtgctgggattccaggcagaagccaccacac i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3476012 109 + 3644372 tagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgac------tcattcacccgcctcggcctcccacagtgctgggattccaggcagaagccaccacac i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3432676 115 - 10304083 tagtagagatggggtttcaccatgttggccatgctggtctcgaactcctaacctcaggtcattcacccgcctcggccttccacagtgctgggattccaggcagaagccaccacac i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3533534 115 - 107702431 tagtagagatggggtttcaccatgttggccaggctggtctcgaactcctaacctcaggtcattcacccgcctcggcctcccacagtgctgggattccaggcagaagccaccacac i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1064134 115 + 1565135 tagtagagatgggctttcaccatgttggccaggctggtctcgaactcctaacctcaggtcattcacccgcctcggcctcccacagtgctgggatttcaggcagaagccaccacac i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3426387 115 - 13651311 tagtagaaatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtcattcacccgcctcagcctcccgcagtgctgggattccaggcagaagccaccacac i colAng1.NW_012118821v1 C 0 C 0 s otoGar3.GL873658 2589358 106 + 5252280 tagtag---tggacactca------tgctcaggctggtctcaaactcctgagctcaagtgatccatgcaccttggtctcccagactgctagggttacaggcgtgagccaccAAGC i otoGar3.GL873658 C 0 N 0 e saiBol1.JH378218 3159541 2151 - 7082604 I e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e calJac3.chr14 3513034 3147 - 108792865 I a score=991454.000000 s hg38.chr2_KI270769v1_alt 111291 176 + 120616 ctggtcTGAC-TTTTGTGTCTTTCTGAAAGTGttttcttcctaatattttataataaaaatattcaagtatgcaaaaacattgagagtattttacagtaaatatccata-cccccttcaccaagactgtgcccttataatctgattctgcctgcactgttcatatctCCACACCTCCC s panTro5.chr2A 3575239 177 + 111504155 ctggtcTGAC-TTTTGTGTCTTCCTGAAAGTGttttcttcgtaatattttataataaaaatattcaagtatgcaaaaacattgagagtattttacagtaaatatccatatcccccttcaccaagactgcgcccttataatctgatgctgcctgcactgttcatatctccatatctccT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3434370 177 + 114371477 ctggtcTGACTTTTTGTGTCTTTCTGAAAGTGttttcttcgtaatattttataataaaaatattcaagtatgcaaaaacattgagagtattttacagtaaatatccata-tccccttcaccaagactgcgcccttataatctgatgctgcctgcactgttcatatctccatatctccT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 312846 176 + 637652 ctggtcTGAC-TTTTGTGTCTTTCTGAAAGTGttttcttcctaatattttataataaaaatattcaagtatgcaaaaacattgagagtattttacagtaaatatccata-cccccttcaccaagactgtgcccttataatctgattctgcctgcactgttcatatctCCACACCTCCA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3108383 173 + 81552678 ctggtcTGAC-TTTTGTGTCTTTCTGAAGGTGttttcttcctaacattttataataaaaatattcaagtatgcaaaaacattgagagtattttacagtaaatatccata-ctcccttcaccaagactgtgcccttataatctgattctgcctgcACTGTTCCTAT---CACACCTCCC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3372335 176 + 108979918 ctggtcTGAC-TTTTGTGTCTTTCTGAAGGTGttttcttcctaacattttataataaaaatattcaagtatgcaaaaacatggagagtatttgactgtaaatatccata-ccaccttcaccaagactgtgcccttataatctgactctgcttgcattgttcatatctccacatctCCC i rheMac8.chr13 C 0 I 129 s macFas5.chr13 5084421 176 - 111193037 ctggtcTGAC-CTTTGTGTCTTTCTGAAGGTGttttcttcctaacattttataataaaaatattcaagtatgcaaaaacatggagagtatttgactgtaaatatccata-cccccttcaccaagactgtgcccttataatctgactctgcttgcattgttcatatctccacatctCCC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3476121 176 + 3644372 ctggtcTGAC-TTTTGTGTCTTTCTGAAGGTGttttcttcctaacattttataataaaaatattcaagtatgcaaaaacatggagagtatttgactgtaaatatccata-ccaccttcaccaagactgtgcccttataatctgattctgcttgcattgttcatatctccacatctCCC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3432791 176 - 10304083 ctggtcTGAC-TTTTGTGTCTTTCTGAAGGTGttttcttcctaacattttataataaaaatattcaagtatgcaaaaacatggagagtatttgactgtaaatatccata-cccccttcaccaagactgtgcccttataatctgactctgcttgcattgttcatatctccacatctCCC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3533649 176 - 107702431 ctggtcTGAC-TTTTGTGTCTTTCTGAAGGTGttttcttcctaacattttataataaaaatattcaagtatgcaaaaacatggagagtatttgacagtaaatatccata-cccccttcaccaagactgtgcccttataatctgactctgctggcattgttcatatctccacatctccc i chlSab2.chr14 C 0 I 120 s manLeu1.NW_012104432v1 1064249 176 + 1565135 ctggtcTGAC-TTTTGTGTCTTTCTGAAGGTGttttcttcctaacattttataataaaaatattcaagtatgcaaaaacatggagagtatttgactgtaaatatccata-cccccttcaccaagactgtgcccttataatctgactctgcttgcattgttcatatctccacatctCCC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3426502 176 - 13651311 GTGGTCTGAC-TTTTGTGTCTTTCTGAAAGTGttttctttctaacattttataataaaaatattcaagtatgcaaaaacatggagagtatttgacagtaaatatccata-cccccttcaccaagactgtgcccttataatctgactctgcttgcattattcatatctccacatctccc i colAng1.NW_012118821v1 C 0 I 136 e saiBol1.JH378218 3159541 2151 - 7082604 I e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e calJac3.chr14 3513034 3147 - 108792865 I a score=4490.000000 s hg38.chr2_KI270769v1_alt 111467 2 + 120616 GC s panTro5.chr2A 3575416 2 + 111504155 GC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3434547 2 + 114371477 GC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 313022 2 + 637652 GC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3108556 2 + 81552678 AC i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5084597 2 - 111193037 AC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3476297 2 + 3644372 AC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3432967 2 - 10304083 AC i cerAty1.NW_012000820v1 C 0 C 0 s manLeu1.NW_012104432v1 1064425 2 + 1565135 AC i manLeu1.NW_012104432v1 C 0 C 0 e saiBol1.JH378218 3159541 2151 - 7082604 I e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e calJac3.chr14 3513034 3147 - 108792865 I e colAng1.NW_012118821v1 3426678 136 - 13651311 I e chlSab2.chr14 3533825 120 - 107702431 I e rheMac8.chr13 3372511 129 + 108979918 I a score=8595.000000 s hg38.chr2_KI270769v1_alt 111469 2 + 120616 TC s panTro5.chr2A 3575418 2 + 111504155 TC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3434549 2 + 114371477 TC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 313024 2 + 637652 TC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3108558 2 + 81552678 TC i nomLeu3.chr19 C 0 I 26 s macFas5.chr13 5084599 2 - 111193037 TC i macFas5.chr13 C 0 I 78 s macNem1.NW_012011978v1 3476299 2 + 3644372 TC i macNem1.NW_012011978v1 C 0 I 1645 s cerAty1.NW_012000820v1 3432969 2 - 10304083 TC i cerAty1.NW_012000820v1 C 0 I 1633 s manLeu1.NW_012104432v1 1064427 2 + 1565135 TC i manLeu1.NW_012104432v1 C 0 I 1628 s calJac3.chr14 3516181 2 - 108792865 TC i calJac3.chr14 I 3147 C 0 e saiBol1.JH378218 3159541 2151 - 7082604 I e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e colAng1.NW_012118821v1 3426678 136 - 13651311 I e chlSab2.chr14 3533825 120 - 107702431 I e rheMac8.chr13 3372511 129 + 108979918 I a score=25683.000000 s hg38.chr2_KI270769v1_alt 111471 41 + 120616 --cacacacacacacacacaca-------caca-cacacacacacacaca-c s panTro5.chr2A 3575420 24 + 111504155 --CATATacacacacacacaca-------caca------------------- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3434551 26 + 114371477 --CATATacacacacacacaca-------caca----------------A-A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 313026 43 + 637652 --CATacacacacacacacacac------caca-cacacacacacacacaTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3108586 42 + 81552678 --cacacacacacacacacaca-------cacaacacacacaaacacaca-T i nomLeu3.chr19 I 26 C 0 s macFas5.chr13 5084679 46 - 111193037 --tatatacacacacatatatattttttatata-tacatacacacatat--- i macFas5.chr13 I 78 I 1 s calJac3.chr14 3516183 41 - 108792865 catatacacacacacacacaca-------caca-cacacacacacacac--- i calJac3.chr14 C 0 C 0 e saiBol1.JH378218 3159541 2151 - 7082604 I e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e colAng1.NW_012118821v1 3426678 136 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3533825 120 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3372511 129 + 108979918 I a score=41420.000000 s hg38.chr2_KI270769v1_alt 111512 15 + 120616 agagacagggtttca s panTro5.chr2A 3575444 15 + 111504155 AAagacagggtttca i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3434577 15 + 114371477 AAagacagggtttca i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 313069 15 + 637652 AAagacagggtttca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3108628 15 + 81552678 AAagacagggtttca i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3372640 15 + 108979918 AAagacagggtctca i rheMac8.chr13 I 129 C 0 s macFas5.chr13 5084726 15 - 111193037 AAagacagggtctca i macFas5.chr13 I 1 C 0 s chlSab2.chr14 3533945 15 - 107702431 AAagacagggtctct i chlSab2.chr14 I 120 C 0 s calJac3.chr14 3516224 13 - 108792865 --acacagggcctca i calJac3.chr14 C 0 C 0 e saiBol1.JH378218 3159541 2151 - 7082604 I e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e colAng1.NW_012118821v1 3426678 136 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I a score=1364080.000000 s hg38.chr2_KI270769v1_alt 111527 382 + 120616 ctctgttgctcaggctggagtgcaggggcacaatcatgactcactacagcctcaaactctggggctcaagagatcctcctgcctcagccttcccagtagctgggactacaggcgtgcactaccatacctggctaatttttta-aaaaaattt--tttctagagacagggtcttattatgttgcccaggctagtctcaaactccaggcctcaagtgatcctcctgccttggcctcccaaagcactgggattacaggcatgagccactgcccccagccTACCT-----TGTTATGTGTTACAAAATCATAAATAAAATGAAAACAAGATTAGGAGGAAAACCTTAAATTTGAAATCAGTCTATTCatagccacacagaaagaaaagacaaac s panTro5.chr2A 3575459 383 + 111504155 ctctgttgctcaggctggagtgcaggggcacaatcatgactcactacagcctcaaactctggggctcaagagatcctcctgcctcagccttcccagtagctgggactacaggcgtgcactaccatacctggctaattttttttaaaaaatgt--tttctagagacagggtcttactatgttgcccaagctagtctcaaactccaggcctcaagtgatcctcctgccttggcctcccaaagcactgggattacaggcatgagccactgtccccagccTACCT-----TGTTATGTGTTACAAAATCATaaataaaatgaaaacaagattaggaagaaaaccttaaatttgaaatcagtgtattcatagccacacagaaagaaaagacaaac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3434592 382 + 114371477 ctctgttgctcaggctggagtgcaggggcacaatcatgactcactacagcctcaaactctggggctcaagagatcctcctgcctcagccttcccagtagctgggactacaggcgtgcactaccatacctggctaattttttt-aaaaaatgt--tttctagagacagggtcttactatgttgcccaagctagtctcaaactccaggcctcaagtgatcctcctgccttggcctcccaaagcactgggattacaggcatgagccactgtccccagccTACCT-----TGTTATGTGTTACAAAATCATaaataaaatgaaaacaagattaggaagaaaaccttaaatttgaaatcagtgtattcatagccacacagaaagaaaagacaaac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 313084 382 + 637652 ctctgttgctcaggctggagtgcaggggcacaatcaagactcactacagcctcaaactctggggctcaagagatcctcctgcctcagccttcccagtagctgggactacaggcatgcactaccatacctggctaattttttt-aaaaatttt--tttctagagacagggtcttactatgttgcccaggctagtctcaaactccaggcctcaagtgatcctcctgccttggcttcccaaagcactgggattacaggcatgagccactgccccctgccTACCT-----TGTTATGTGTTACAAAATCATAAATAAAATGAAAACAAGATTAGGAGGAAAACCTTAAATTTGAAATCAGTCTATTCatagccacacagaaagaaaagacaaac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3108643 383 + 81552678 ctctgtggctcaggctggagtgcaggggcacaatcatgactaaccacagcctcaaactctggggctcaagacatcctcctgcttcagccttcccagtagcggggactacgggcgtgcactaccatacctggctaattttttaaaaaaaattt--tttctagagacagggtcttactatattgcccaggctagtctcaaactcctggcctcaagtgatcctcctgccttggcctcccaaagcactgggattacaggcatgagccactgcactcagccTACCT-----TGTTATGCGTTACAAAATCATAAATAAAATGAAAACAAGATTAGGAGGAAAACCTTAAATTTGAAATCAATCTATTCatagccacacagaaagaaaagacaaat i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3372655 383 + 108979918 ctctgtcgctcaggctggagtgcaggggcacaatcataactgactacagcctcaaactctggggctcaagagatcctcctgcctcagccttccaggtagccaggattacaggtgtgcactaccacacctggctaattaaaaaaaaaaaaaaa--tttctagagagagggtcttactatgttgcccaggctagtctcaaactcccggcctcaagtgatcctcctgccttggcctcccaaagcactgggattataggcatgagccactgcacccagccAACTT-----TGTTATGCTTTACAAAATCATaaataaaatgaaaacagtattagaaggaaaaccttaaatttgaaatcaatctattcatagccacacagaaagaaaagagaaac i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5084741 380 - 111193037 ctctgtcgctcaggctggagtgcaggggcacaatcataactgactacagcctcaaactctggggctcaagagatcctcctgcctcagccttccaggtagccaggactacaggtgtgcactaccacacctggctaatt---aaaaaaaaaaaa--tttctagagagagggtcttactatgttgcccaggctagtctcaaactcccggcctcaagtgatcctcctgccttggcctcccaaagcactgggattataggcatgagccactgcacccagccAACTT-----TGTTATGCTTTACAAAATCATaaataaaatgaaaacagtattagaaagaaaaccttaaatttgaaatcaatctattcatagccacacagaaagaaaagagaaac i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3533960 383 - 107702431 ctctgttgctcaggctggagtgcaggggcacagtcataactgactacagcctcaaactctggggctcaagagatcctcctgcctcagccttccaggtagccaggactacaggtgtgcactaccacacctggctaattaaaaaaaaaaaaaaa--tttctagagacaaggtcttactatgttgcccaggctagtctcaaactcccggcctcaagtgatcctcctgccttggcctcccaaagcactgggattataggcatgagccactgcacccagccTACCT-----TGTTATGCTTTACAAAATCATAAATAAAATGAAAACAGTATTAGAAGGAAAACCttaaatttgaaatcaatctattcatagccacacagaaagaaaagagaaac i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3426814 384 - 13651311 ctctgtcgctcaggctggagtgcaggggcacaatcataactgactacagcctcaaactctggggctcaagagatcctcctgcctcagccttccaggtagccaggactacaggtgtgcactaccacacctggctaatt---aaaaaaaaaaaa--tttctagagacagggtcttactatgttgcccaggctagtctcaaacccctggcctcaagtgatcctcctgccttggcctcccaaagcactgggattataggcatgagccactgcacccagccTACCTTGTTATGTTATGCTTTACAAAATCATaaataaaatgaaaacaagattag-aggaaaaccttaaatttgaaatcaatctattcatagccacacagaaagaaaagacaaat i colAng1.NW_012118821v1 I 136 C 0 s calJac3.chr14 3516237 375 - 108792865 ctgtgctgcccaagctggagcgcagcagcacaatcataactcactgcagcctcgaactcc--agctccagagatcctcctgcct-aaccttccaagtagcttggatgacacgcatgcacaaccatacctggctaattaacac-aaaaatttttatttctagagacagagtcttactatgttgcccaggctactctgaaactcctggcctcaagcaatccttcagccttggcctcccaaagcactgggattacaggcatgagccactgca-----ccTACCT-----TGTTATGCTTGACAAAATCACAGACAATATGAAAACAAGATTAGGAAGAAAATCTTAAATGTGAAATCAATCTATTTATAGTCGC-CAGAGAGAAAAGACAGAC i calJac3.chr14 C 0 I 299 e saiBol1.JH378218 3159541 2151 - 7082604 I e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I a score=915704.000000 s hg38.chr2_KI270769v1_alt 111909 309 + 120616 ggaaatag-ctctttttttttt-------tttttttttgagacggaatttcactcttgttgcccaggctggagtgcaatggcgcgatctcggctcacttcaacctccgcctcccaggttcaagcaattctctgcctcagcctcccaagtagctggggtcacaggcatg-atcaccacacccagctaattttatatttttagtagagacggggtttctccatgttggtcaggctggcctcgaactctcgtccttgggtgatctgcccacctcagtctcccaaagtgctaggattacaggcgtgagccaccgcacacggc s panTro5.chr2A 3575842 305 + 111504155 ggaaatag-ct----ttttttt-------tttttttttgagacggaatttcactcttgtagcccaggctggagtgcaatggcgcgatctcggctcaattcaacctccgcctcccaggttcaagcaattctctgcctcagcctcccaagtagctggggtcacaggcatg-atcaccacacccggctaattttatatttttagtagagacggggtttctccatgttggtcaggctggcctcgaactcccgaccttgggtgatctgcccatctcagtctcccaaagtgctaggattacaggtgtgagccaccacacacggc i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3434974 310 + 114371477 ggaaatagtctttttttttttt-------tttttttttgagacggaatttcactcttgtagcccaggctggagtgcaatggcgcgatctcggctcacttcaacctccgcctcccaggttcaagcaattctctgcctcagcctcccaagtagctggggtcacaggcatg-atcaccacacccggctaattttatatttttagtagagacggggtttctccatgttggtcaggctggcctcgaactcccgaccttgggtgatctgcccatctcagtctcccaaagtgctaggattacaggcgtgagccaccacacacggc i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 313466 305 + 637652 ggaaatag-ct----ctttttt-------tttttttttgagacggaatttcactcttgttgcccaggctggagtgcaatggcacgatctcggctcacttcaacctccgcctcccaggttcaagcaattctctgcctcagcctcccaagtagctggggtcacaggcatg-atcaccacacccggctaattttatatttttagtagagacggggtttctccatgttggtcaggctggcctcgaactcccgaccttgggtgatctgcccacctcagtctcccaaagggctaggattacaggcgtgagccaccgcacacagc i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3109026 307 + 81552678 ggaaatca-ctc---ttttttt-------tttttttttgagatggaatttcgctcttgttgcccaggctggagtgcaatggcgcgatcttggatcacttcaacctccgcctcccaggttcaagcaattatctgcctcagcctcccgagtagctggggtcacaggcatgcgtcagcacaccctgctaattttatatttttagtagagacggggtttctccatgttggtcaggctggcctcgaactcccgaccttgggtgatccgcccacctcagcctcccaaagtgttaggattacaggcgtgagccatcgcacatggc i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3373038 303 + 108979918 ggaaataa-ct-------tttt-------tttttttttgaaatggaatttcactcttgttgcccaagctggagtgcaatggcacaatcttggctcactgccacctctgcctcccaggttcaagcaattctctgcctcagcctcccgagtagctggggtcacaggcatgcgtcaccacacccgcctaattttatattcttagtagagatggggtttctccatgttggtcaggctggcctcgaactcccgaccttgggtgatctgcccacctcagcctcccaaagtgctaggattacaggcgtgagccaccacacacggc i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5085121 303 - 111193037 ggaaataa-ct-------tttt-------tttttttttgaaatggaatttcactcttgttgcccaagctggagtgcaatggcacaatcttggctcactgccacctccgcctcccaggttcaagcaattctctgcctcagcctcccgagtagctggggtcacaggcatgcgtcaccacacccgcctaattttatattcttagtagagatggggtttctccatgttggtcaggctggcctcgaactcctgaccttgggtgatctgcccacctcagcctcccaaagtgctaggattacaggcgtgagccaccacacacagc i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3534343 310 - 107702431 ggaaataa-ct-------ttttgtgtgtgtgtgtgtgtgaaatggaatttcactcttgttgcccaagctggagcacagtggcacaatcttggctcactgcaacctccgcctcccaggttcaagcaattctctgcctcagcctcccgagtagctggggtcacaggcatgcgtcaccacacccgcctaactttatatttttagtagagacggggtttctccatgttggtcaggctggcctcgaactcccgactttgggtgatctgcccgcctcagcctcccgaagtgctaggattacaggcgtgagccaccacacacagt i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3427198 303 - 13651311 ggaaataa-ct-------tttt-------tttttttttgaaatggaatttcactcttgttgcccgggctggagtgcaatggcgcaatcttggctcactgcaacctctgcctcccaggttcaagcaattctctgcctcagcctcccgagtagctggggtcacaggcatgtgtcaccacacccgcctaattttatatttttagtagagacagggtttctccatgttggtcaggctggtctcgaactcccgaccttgggtgatctgcccgcctcagcctcccgaagtgctgggattacaggcgtgagccaccgcacacggc i colAng1.NW_012118821v1 C 0 C 0 e saiBol1.JH378218 3159541 2151 - 7082604 I e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e calJac3.chr14 3516612 299 - 108792865 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I a score=1468662.000000 s hg38.chr2_KI270769v1_alt 112218 379 + 120616 gacaaacggaaataactcttgaacatattattttgactacatcctcaggctaagacagaaaaaccgcaacccaagcttaggttgcactcagtaggcctgctgcttgtcatggtctgggtgctgccatgctgatgctg--ttgtgtgtgttgtggggattgagaggatgggaaaaaacattgatatgactgggagccaggcctctcacagtgagaggaaagatacaaatactgatgaggaaggcaaaggaaagccctgtggatgtaactggaattagaggtgtctgtttg----aactACTTGTC--ACACACACAG--GGACACATGCACACTCACACAGGCGCACTGTCACACAAGCACAC------ACACTCCCATGCTAGCATTCACACAC-A s panTro5.chr2A 3576147 379 + 111504155 GACAAACGGaaataactcctgaacatattattttgactacatcctcaggctaagacagaaaaaccgcaacccaagcttaggttgcactcagtaggcctgctgcttgtcatggtctgggtgccgccatgctgatgctg--ttgtgtgtgttgtggggattgagaggatgggaaaaaacattgatatgactgggagccaggcctctcacagtgagaggaaagatacaaatactgatgaggaaggcaaaggaaagccctgtggatttaaccggaattagaggtgtctgtttg----aactACTTGTC--ATACACACGC--GGACACATGCACACTCACACATGCGCACCGTCACACAAGCACAC------ACACTCACATGCTAGCATTCACACAC-A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3435284 377 + 114371477 gacaaacggaaataactcctgaacatattattttgactacatcctcaggct--gacagaaaaaccgcaacccaagcttaggttgcactcagtaggcctgctgcttgtcatggtctgggtgccgccatgctgatgctg--ttgtgtgtgttgtggggattgagaggatgggaaaaaacattgatatgactgggagccaggcctctcacagtgagaggaaagatacaaatactgatgaggaaggcaaaggaaagccctgtggatttaactggaattagaggtgtctgtttg----aactACTTGTC--ATACACACGC--GGAcacatgcacactcacacatgtgcaccgtcacacaagcagac------acactcacatgctagcattcacacac-a i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 313771 381 + 637652 gacaaacggaaataactcttgaacatattattttgactacatcctcaggctaagacagaaaaaccgcaacccaagcttaggttgcactcagtaggcctgctgcttgtcatggtctgggtgccgccatgctgatgctg--ttgtgtgtgttgtggggattgagaggatgggaaaaaacattgaaatgactgggagccaggcttctcacagtgagaggaaagatacaaatactgatgaggaaggcaaaggaaagccctgtggatttaactggaattagaggtgtctgtttg----aactacttgtc--atacacacacagggacacatgcaCACTCACACATGCGCAATGTcacacaagcacac------acactcacatgctagcattcacacac-a i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3109333 378 + 81552678 gacaaacggaaataactctcgaacatattattttgactacatcctcaggctaagacagaaaaaccgcaacccaagcttaggttgcactcagtaggcctgctgtttgtcatggtctgggtgcagccatgctgatgctg--ttgtgtgtgttgt-gggattgagaggatgggaaaaaatattgatatgactgggagccaggcttctcacagtgagaggaaagatgcaaatactgatgaggaaggcaaaggaaagccctgtagatttaactgtaattagaggtgtccatttg----aactacttgac--atatacacacacggacacatgcacactcacacatgcacactgtcacacaagcacac------acactcacatggtagcatc--cacac-a i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3373341 383 + 108979918 gacaaacagaaataactcttgaacatattattttgactacatcctcaggctaagacagaaaaaccgcaacccaagcttaggttgcactcagtaggcctgctgttcgtcacggtctgggggcagccatgctgacgctg--gtgtgtgtgttgt-gggattgagaggatgggaaaa-agattggtatgactgggagccgggcttctcacagtgagaggaaagacacaaatactgatgaggaaggcaaaggagagccctgtggatttcactggaattacagttgtccgtttg----aactACTTGATacacacacacac--ggacacacgcacactcacac--ctgcactgtcacacatgcacacgctcacacactcacatgctagtattcacacaca- i rheMac8.chr13 C 0 I 1091 s macFas5.chr13 5085424 382 - 111193037 gacaaacagaaataactcttgaacatattattttgactacatcctcaggctaagacagaaaaaccgcaacccaagcttaggttgcactcagtaggcctgctgttcgtcacggtctgggggcagccatgctgatgctg--gtgtgtgtgttgt-gggattgagaggatgggaaaa-agattggtatgactgggagccgggcttctcacagtgagaggaaagacacaaatactgatgaggaaggcaaaggagagccctgtggatttcactggaattagagttgtccgtttg----aactACTTGATacacacacacac--ggacacacgcacactcacac--gtgcactgtcacacatgcacacgctcacacactcacatgctagtattcacacac-- i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3534653 380 - 107702431 gacaaacagaaataactcttgaacatattattttgactacatcctcaggctaagacagaaaaaccgcaacccaagcttaggttgcactcagtaggcctgctgttcgtcacggtctgggggcagccatactgacgctg--gggtgtgtgttgt-gggattgagaggatgggaaaa-agattggtatgactgggagccgggcttctcacagtgagaggaaagatacaagtactgatgaggaaggcaaaggagagccctgtggatttcactggaattagagttgtccgtttg----aactacttgat--ACACACACAC--GGGCACACGCACACTCACAC--GCACACCGTCACACGTGCACACGCTCATACATTCACATGCTAGTATTCACACAC-- i chlSab2.chr14 C 0 C 0 s colAng1.NW_012118821v1 3427501 383 - 13651311 gacaaacggaaataactcttgaacatattattttgactacatcctcaggctaagacagaaaaaccgcaacccaagcttaggttgcactcagtaggcctgctgttcgtcacggtctgggtgcagccatgctgacgctg--gtgtgtgtgttgt-gggattgagaggatgggaaaatatactggtatgactgggagccgggcttctcacagtgagaggaaagatacaaatactgatgaggaaggcaaaggaaagccctgtggatttaactggaattagagttgtccgtttg----aactacatgat--atacacacac--ggacacacgcacactcacacatgcgcactgtcacacaggcacacgttcacacactcacatgctagtattcacacac-- i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3516911 350 - 108792865 gacaaaCTGAAATAACTTTTCAACGTCTTGTTTGGATGACATCCTCAGTCTAAGACAG-AAAACTGCAATCCAAGCTTAGGTTCTCCCCAGTAGGCCTGTTGTTTATAACGCCCTGGGTGTAGCCATGCTGACACTGTTTTGTGTGTGTTGT-GGGACTGAGAGAATGGGAAAA-CCATCACTCTGACCGGGAGCCGGCCTTCTCGCAGTGGGAGGAAAGATGGAAATACT-ATGAGGAAGGCAAAGGAAAGCCCCACAGATTTCACCGGAGTTAGAGGTGCCCATTTGAACTAACTACTTGAT--ATGcacacacacagacacatgcacacacacac----------------------------------tcacatgctagcattcac------ i calJac3.chr14 I 299 C 0 s saiBol1.JH378218 3161692 347 - 7082604 gacaaactgaaataacttttaaacatattgttttgatgacatcctcagtctaagacagaaaaactgcaatccaagcttagcttctcctcagtaggcccgttgtttgtaatggtctgggtgtagccacgctgacactgttttgtgtgtgttgt-gggactgagagaatgggaaaa-atagtgctatgatcgggagccggccttctcacagtgggaggagagatggaaatact-acaaggaaggcaaaggaaagccctgccgatttcaccagagttagaggtgcccgtttgaactaactacttgat--atgcacacacacagacacatgcacactca--------------------------------------cacatgctagcattcac------ i saiBol1.JH378218 I 2151 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I a score=41924.000000 s hg38.chr2_KI270769v1_alt 112597 27 + 120616 AACCTACACACG----CACACACACGTACAC s panTro5.chr2A 3576526 27 + 111504155 AACCTACACACG----CACACACACGTACAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3435661 25 + 114371477 aacctacacacg------cacacacgtacac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314152 31 + 637652 aacctacacacacacacacacacacgtacac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3109711 29 + 81552678 aacctacacaca--cgcacacacacatacat i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5085806 15 - 111193037 -acctacacaca----cgta----------- i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3535033 26 - 107702431 -ACCTACACATG----CGCACACACGTACAC i chlSab2.chr14 C 0 I 280 s colAng1.NW_012118821v1 3427884 26 - 13651311 -acctacagaca----cgcacacatgtacac i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3517261 20 - 108792865 -------gcagg----tacacacatgtacac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162039 14 - 7082604 -----------------acacacatgtacac i saiBol1.JH378218 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I a score=1219.000000 s hg38.chr2_KI270769v1_alt 112624 1 + 120616 G s panTro5.chr2A 3576553 1 + 111504155 G i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3435686 1 + 114371477 g i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314183 1 + 637652 g i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3109740 1 + 81552678 g i nomLeu3.chr19 C 0 C 0 s colAng1.NW_012118821v1 3427910 1 - 13651311 g i colAng1.NW_012118821v1 C 0 I 537 s calJac3.chr14 3517281 1 - 108792865 a i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162053 1 - 7082604 a i saiBol1.JH378218 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e macFas5.chr13 5085821 0 - 111193037 C e rheMac8.chr13 3373724 1091 + 108979918 I a score=21444.000000 s hg38.chr2_KI270769v1_alt 112625 26 + 120616 CTCTCACATGCGTACATTCACACTCA s panTro5.chr2A 3576554 26 + 111504155 CTCTCACATGCGTACATTCACACTCA i panTro5.chr2A C 0 I 2 s panPan2.chr2A 3435687 26 + 114371477 ctcacacatgcgtacattcacactca i panPan2.chr2A C 0 I 1353 s gorGor5.CYUI01015435v1 314184 25 + 637652 ctctcacatgcatacattcatactc- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3109741 24 + 81552678 ctctcacatgtgt--attcacactca i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5085821 22 - 111193037 ----cacatgtgtgcattcacattca i macFas5.chr13 C 0 C 0 s calJac3.chr14 3517282 16 - 108792865 cact--cgcgcgtgcatt-------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162054 18 - 7082604 cactgacgcatgtgtatt-------- i saiBol1.JH378218 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I a score=640.000000 s hg38.chr2_KI270769v1_alt 112651 7 + 120616 CATGCAC s panTro5.chr2A 3576582 7 + 111504155 CACACAC i panTro5.chr2A I 2 I 2 s nomLeu3.chr19 3109765 7 + 81552678 catgcac i nomLeu3.chr19 C 0 I 6 s macFas5.chr13 5085843 4 - 111193037 tatg--- i macFas5.chr13 C 0 C 0 s calJac3.chr14 3517298 3 - 108792865 ----cac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162072 3 - 7082604 ----cac i saiBol1.JH378218 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I e gorGor5.CYUI01015435v1 314209 0 + 637652 C e panPan2.chr2A 3435713 1353 + 114371477 I a score=20843.000000 s hg38.chr2_KI270769v1_alt 112658 41 + 120616 ACA----TACATGCATGCATTCACACACATGCACACACGTAACAC s panTro5.chr2A 3576591 41 + 111504155 ACA----CACATGCATGCATTCACACACATGCACACACGTAACAC i panTro5.chr2A I 2 C 0 s panPan2.chr2A 3437066 41 + 114371477 ACA----CACATGCATGCATTCACACACATGCACACACGTAACAC i panPan2.chr2A I 1353 I 7 s gorGor5.CYUI01015435v1 314209 32 + 637652 --------acatgcatgcatt--cacacatgcacacacgtaa--- i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3109778 43 + 81552678 acactctcacatgcgtgcattcacacacat--acatacttaacac i nomLeu3.chr19 I 6 C 0 s macFas5.chr13 5085847 16 - 111193037 ---------------------cacatacatgtacaca-------- i macFas5.chr13 C 0 C 0 s calJac3.chr14 3517301 20 - 108792865 aca----catgtacacacactcgc--------------------- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162075 33 - 7082604 aca----cacacacgtgcattcaca---atgtacacacat----- i saiBol1.JH378218 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I a score=16889.000000 s hg38.chr2_KI270769v1_alt 112699 35 + 120616 TCTCTCATGTGCATTCACA-------CACATGCACACACGTA s panTro5.chr2A 3576632 31 + 111504155 TC----ATGTACATTCACA-------CACACGCACACATACA i panTro5.chr2A C 0 I 16 s nomLeu3.chr19 3109821 35 + 81552678 tcactcatgtgcattcaca-------cacatgcacacacata i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5085863 29 - 111193037 -----cacgtgcattcaca-------catccacacacatgt- i macFas5.chr13 C 0 C 0 s calJac3.chr14 3517321 27 - 108792865 ------gcgtgcattcaca-------cacatgtacacaca-- i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162108 32 - 7082604 ------gcatgcattcacacaagactcacatgtacacg---- i saiBol1.JH378218 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3388591 2644 + 7587287 I e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I e gorGor5.CYUI01015435v1 314241 0 + 637652 C e panPan2.chr2A 3437107 7 + 114371477 I a score=3995.000000 s hg38.chr2_KI270769v1_alt 112734 13 + 120616 ACACTCACTCATG s gorGor5.CYUI01015435v1 314241 8 + 637652 -----cactcatg i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3109856 8 + 81552678 -----cacacGTG i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5085892 13 - 111193037 acacttacatgtg i macFas5.chr13 C 0 C 0 s calJac3.chr14 3517348 8 - 108792865 -----ctcgcgcg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162140 6 - 7082604 -------cgtgca i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3391235 13 + 7587287 ACACTCACGCGTG i aotNan1.NW_018509326v1 I 2644 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I e panPan2.chr2A 3437107 7 + 114371477 I e panTro5.chr2A 3576663 16 + 111504155 I a score=32825.000000 s hg38.chr2_KI270769v1_alt 112747 18 + 120616 TGCATTCACACACATGCA s panTro5.chr2A 3576679 18 + 111504155 TGCATTCACTCACATGCA i panTro5.chr2A I 16 C 0 s gorGor5.CYUI01015435v1 314249 18 + 637652 tgcatttacacacatgca i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3109864 18 + 81552678 TGCATTCACACATGTACA i nomLeu3.chr19 C 0 I 115 s macFas5.chr13 5085905 18 - 111193037 tgcattcacacacacaca i macFas5.chr13 C 0 C 0 s calJac3.chr14 3517356 16 - 108792865 tgcattc--acacatgta i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162146 18 - 7082604 tgcattcaaacacacgta i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3391248 18 + 7587287 TGCATTCACACACATGTA i aotNan1.NW_018509326v1 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I e panPan2.chr2A 3437107 7 + 114371477 I a score=5491.000000 s hg38.chr2_KI270769v1_alt 112765 4 + 120616 CACA s panTro5.chr2A 3576697 4 + 111504155 CACA i panTro5.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314267 4 + 637652 caca i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5085923 2 - 111193037 --ca i macFas5.chr13 C 0 C 0 s calJac3.chr14 3517372 4 - 108792865 caca i calJac3.chr14 C 0 I 2 s saiBol1.JH378218 3162164 4 - 7082604 ccca i saiBol1.JH378218 C 0 I 2 s aotNan1.NW_018509326v1 3391266 4 + 7587287 CACA i aotNan1.NW_018509326v1 C 0 I 189 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I e nomLeu3.chr19 3109882 115 + 81552678 I e panPan2.chr2A 3437107 7 + 114371477 I a score=-1654.000000 s hg38.chr2_KI270769v1_alt 112769 16 + 120616 TACACACTGACACGCA s panTro5.chr2A 3576701 14 + 111504155 CGTACAC--ACATGCA i panTro5.chr2A C 0 I 2 s gorGor5.CYUI01015435v1 314271 16 + 637652 tacgtactcacacgca i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5085925 12 - 111193037 tgtacac--acgtg-- i macFas5.chr13 C 0 C 0 s calJac3.chr14 3517378 10 - 108792865 TTCACGC----GTG-- i calJac3.chr14 I 2 C 0 s saiBol1.JH378218 3162170 12 - 7082604 ctcacgc--atgtg-- i saiBol1.JH378218 I 2 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3391270 189 + 7587287 I e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I e nomLeu3.chr19 3109882 115 + 81552678 I e panPan2.chr2A 3437107 7 + 114371477 I a score=113057.000000 s hg38.chr2_KI270769v1_alt 112785 199 + 120616 CATT-CACACACATGCACACA-------------------------TACACACGTACT--CACACGCA--CATTCACACACATGCAC-ACATACACACGT--ACTCACAC--GCACATTCACACACATGCACAC--------GTACACACAC--GAGTGCATTCACAC--TCATGCACACATACGGACGTACACTCACACGTGTGCATTCACACTCA--TGCACACGTACACACACACGCCTACATTC s panTro5.chr2A 3576717 232 + 111504155 CATT-CACACACATGCACACACGTAACACTCGTGCATTCACACACATCCACACATACA--CACACGCA--CATTCACACACATGCAC-ACATACACACGT--ACTCAC----GCACATTCACACACATGCACACATACACACGTACACACACATGCGTGCATTCACACACTCATGCACACATACAGACGTACAC--ACACGTGTGCATTCACACTCACATGCACACGTACACACATGCG--TACATTC i panTro5.chr2A I 2 C 0 s panPan2.chr2A 3437114 197 + 114371477 CATT-Cacacacatgcacaca-------------------------tacacacgtact----cacgca--cattcacaca----tgc-acatacacacgt--actcac------acatt--cacacatgcacacatacacacgtacacacat--GCGTGCACTCACACTCACATGCACACATACAGACGTACAC--TCACGTGTGCATTCACACTCACATGCACACGTACACACACATGCGTACATTC i panPan2.chr2A I 7 C 0 s gorGor5.CYUI01015435v1 314287 204 + 637652 catt-cacacacatgcacaca-----------------------------cacgtaca--cacatgcatgcattcacacactcatgcaacatacagacgtacactcacacgtgtgcattcacacacatgcacacgtacacac--actcacat--gcgtgcattcacactcacat-cacacacaca-----actctcacacgtgtgcattcacactcacatgcacgagtacacacatgcg--tgcattc i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5085937 174 - 111193037 cattccacacacggctacaca---------------------ctcgcacacacgtacactcacatgtgtgcattcacacactcacat-gcacacacacgt--atgcac----atgcatt--cacacatgcacac----acatgcactctcac--gtgtgcattcacac--acatgcacacgtgca----------------------------------tgtacatatacacacttggg--tgcattc i macFas5.chr13 C 0 C 0 s calJac3.chr14 3517388 159 - 108792865 CATT-cacacacatgtacaca---------------------------------------cactcgcg--cgtgcattca----cac-atgtacacacat--tcacgc----gtgcattcacacacatgtacaca------------ctcgc--gcgtgcattcacac--a--------catgta------cact--cacgtgtgcattcacacacacatgtacac--acgctcgtgcg--tgcattc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162182 161 - 7082604 catt-cacacacacgtacaca---------------------------------------cgcatgtg--cattcagact----cac-atgtacacacac--gcatgt----g------cactcacatgtgcaca--------------cgc--acgtgcattcacac--acagactcgcatgta----cccactcacacacatgcattcacacacac--gtaccc--actcacgcaTG--TGCATTC i saiBol1.JH378218 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3391270 189 + 7587287 I e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I e nomLeu3.chr19 3109882 115 + 81552678 I a score=50341.000000 s hg38.chr2_KI270769v1_alt 112984 52 + 120616 ACACACTCACATGCACACATACACACGTACACACTC----ACACACGTGCATT--CAC s panTro5.chr2A 3576949 54 + 111504155 ACACACTCACATGCACACATACACACGTACACACTC--TCACACGCGTGCATT--CAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3437311 48 + 114371477 ACA----CACATGCACACACACGTACACACACTCTC----ACACGCGTGCATT--CAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314491 56 + 637652 aca--ctcacatgcacacatacacacgtacacacactctcacacgcgcgcattcacac i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5086111 44 - 111193037 aca--------cacacatatgcacacatacactctc----acatgcgtgtatt--cac i macFas5.chr13 C 0 C 0 s calJac3.chr14 3517547 36 - 108792865 acaca--cacatgta------------cacacgcT------tgtgcgtgcatt--cac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162343 40 - 7082604 GCACACTCACATGTA------------CACAGACTC----ACAtgcatgcatt--cac i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3391459 52 + 7587287 ACACACGCACATGCATTCACACACACGTACACACTC----ACACGCATGCATT--CAC i aotNan1.NW_018509326v1 I 189 I 103 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I e nomLeu3.chr19 3109882 115 + 81552678 I a score=7269.000000 s hg38.chr2_KI270769v1_alt 113036 6 + 120616 TCGCAT s panTro5.chr2A 3577003 6 + 111504155 TCGCAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3437359 6 + 114371477 TCGCAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314547 6 + 637652 acgcac i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5086155 6 - 111193037 acacac i macFas5.chr13 C 0 C 0 s calJac3.chr14 3517583 6 - 108792865 acacac i calJac3.chr14 C 0 I 2 s saiBol1.JH378218 3162383 6 - 7082604 acacac i saiBol1.JH378218 C 0 I 2 e dasNov3.JH580157 682513 0 + 2232271 C e cebCap1.NW_016107454v1 646202 2961 + 5243153 I e aotNan1.NW_018509326v1 3391511 103 + 7587287 I e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I e nomLeu3.chr19 3109882 115 + 81552678 I a score=-4292.000000 s hg38.chr2_KI270769v1_alt 113042 1 + 120616 -G s panTro5.chr2A 3577009 1 + 111504155 -A i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3437365 1 + 114371477 -A i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314553 1 + 637652 -a i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5086161 1 - 111193037 -a i macFas5.chr13 C 0 I 1 s calJac3.chr14 3517591 1 - 108792865 t- i calJac3.chr14 I 2 C 0 s cebCap1.NW_016107454v1 649163 1 + 5243153 g- i cebCap1.NW_016107454v1 I 2961 C 0 e saiBol1.JH378218 3162389 2 - 7082604 I e dasNov3.JH580157 682513 0 + 2232271 C e aotNan1.NW_018509326v1 3391511 103 + 7587287 I e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I e nomLeu3.chr19 3109882 115 + 81552678 I a score=96332.000000 s hg38.chr2_KI270769v1_alt 113043 48 + 120616 GTACTCATCCCGTCCACAGAAAGCACCTGAGCACAGCGACTCTGCAGG- s panTro5.chr2A 3577010 46 + 111504155 GTACTCATCCTGTCCACAGAAAGCACCTGAGCACAGTGACC--GCAGG- i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3437366 48 + 114371477 GTACTCATCCCGTCCACAGAAAGCACCTGAGCACAGTGACTCTGCAGG- i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314554 46 + 637652 GTACTCATCCTGTCCACAGAAAGCACCTGAGCACAGTGACT--GCAGG- i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5086163 41 - 111193037 acTCTAATCCCGCCCACTGAAAGCACCTGAG--CAGTGACTTT------ i macFas5.chr13 I 1 C 0 s calJac3.chr14 3517592 49 - 108792865 gtactcatctcgtccactgaaagcacgtgcacacagtgactctgcagtg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162391 47 - 7082604 -tactcatc-cgtccactgaaagtgtctgtgcacagtgactccgcagtg i saiBol1.JH378218 I 2 C 0 s cebCap1.NW_016107454v1 649164 49 + 5243153 gtactcatcccgtccactgaaagcacctgcgcacagtgactccgcagtg i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3391614 49 + 7587287 GTACTCATCCCATCCACTTAAAGCACCTGAGCACAGTGACTCCTCAGTG i aotNan1.NW_018509326v1 I 103 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e chlSab2.chr14 3535059 280 - 107702431 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I e nomLeu3.chr19 3109882 115 + 81552678 I a score=7200.000000 s hg38.chr2_KI270769v1_alt 113091 2 + 120616 GC s panTro5.chr2A 3577056 2 + 111504155 GC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3437414 2 + 114371477 GC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314600 2 + 637652 GC i gorGor5.CYUI01015435v1 C 0 C 0 s chlSab2.chr14 3535339 2 - 107702431 gc i chlSab2.chr14 I 280 C 0 s calJac3.chr14 3517641 2 - 108792865 gc i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162438 2 - 7082604 gc i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 649213 2 + 5243153 gc i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3391663 2 + 7587287 GC i aotNan1.NW_018509326v1 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e colAng1.NW_012118821v1 3427911 537 - 13651311 I e manLeu1.NW_012104432v1 1064429 1628 + 1565135 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e macFas5.chr13 5086204 0 - 111193037 C e rheMac8.chr13 3373724 1091 + 108979918 I e nomLeu3.chr19 3109882 115 + 81552678 I a score=12690.000000 s hg38.chr2_KI270769v1_alt 113093 3 + 120616 ACT s panTro5.chr2A 3577058 3 + 111504155 ACT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3437416 3 + 114371477 ACT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314602 3 + 637652 ACT i gorGor5.CYUI01015435v1 C 0 C 0 s chlSab2.chr14 3535341 3 - 107702431 act i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1066057 3 + 1565135 ACT i manLeu1.NW_012104432v1 I 1628 C 0 s calJac3.chr14 3517643 3 - 108792865 act i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162440 3 - 7082604 act i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 649215 3 + 5243153 act i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3391665 3 + 7587287 ACT i aotNan1.NW_018509326v1 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e colAng1.NW_012118821v1 3427911 537 - 13651311 I e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e macFas5.chr13 5086204 0 - 111193037 C e rheMac8.chr13 3373724 1091 + 108979918 I e nomLeu3.chr19 3109882 115 + 81552678 I a score=22494.000000 s hg38.chr2_KI270769v1_alt 113096 5 + 120616 CCCAT s panTro5.chr2A 3577061 5 + 111504155 CCCAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3437419 5 + 114371477 CCCAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314605 5 + 637652 CCCAT i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5086204 3 - 111193037 --CAG i macFas5.chr13 C 0 C 0 s chlSab2.chr14 3535344 5 - 107702431 cccat i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1066060 5 + 1565135 CTCAG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3428448 5 - 13651311 CCCAT i colAng1.NW_012118821v1 I 537 C 0 s calJac3.chr14 3517646 5 - 108792865 cccat i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162443 5 - 7082604 cccat i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 649218 5 + 5243153 ctcat i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3391668 5 + 7587287 CCCAT i aotNan1.NW_018509326v1 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e cerAty1.NW_012000820v1 3432971 1633 - 10304083 I e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I e nomLeu3.chr19 3109882 115 + 81552678 I a score=16379.000000 s hg38.chr2_KI270769v1_alt 113101 3 + 120616 CCG s panTro5.chr2A 3577066 3 + 111504155 CCG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3437424 3 + 114371477 CCG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314610 3 + 637652 CCG i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5086207 3 - 111193037 CCA i macFas5.chr13 C 0 C 0 s cerAty1.NW_012000820v1 3434604 3 - 10304083 CCG i cerAty1.NW_012000820v1 I 1633 C 0 s chlSab2.chr14 3535349 3 - 107702431 cgg i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1066065 3 + 1565135 CCG i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3428453 3 - 13651311 CCG i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3517651 3 - 108792865 ccg i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162448 3 - 7082604 ctg i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 649223 3 + 5243153 cca i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3391673 3 + 7587287 CCG i aotNan1.NW_018509326v1 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e macNem1.NW_012011978v1 3476301 1645 + 3644372 I e rheMac8.chr13 3373724 1091 + 108979918 I e nomLeu3.chr19 3109882 115 + 81552678 I a score=1676052.000000 s hg38.chr2_KI270769v1_alt 113104 233 + 120616 AGTTTCTAAGTGCCAGGGCTAAGTGCCAggaagagcagctgaccccgcacaaggtcaggaaaagcaggaggtgggcctggacacgctgtaggtccagaaagtaatgggctggggatgcgccaggggacagaagtcagctaacgaggct-gctgcttgccaagcctgaggtctgggacaacgtgaagatcaacataaatcccagcaagaat----agaccctagaccaacaagtgagac s panTro5.chr2A 3577069 233 + 111504155 AGTTTCTGAGTGCCAGGGCTAGGTGCCAggaagagcagctgaccccgcacaaggtcaggaaaagcaggaggtgggcctggacacgctgtgggtccagaaagtaacgggctggggatgcgccaggggacggaagccagctgacgaggct-gctgcttgccaagcctgaggtctgggacaacgtgaagatcaacataaatcccagcaagaat----agaccctagaccaacaagtgaaac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3437427 232 + 114371477 AGTTTCTAAGTGCCAGGGCTAGGTGCCAggaagagcagctgaccccgcacaaggtcaggaaaagcaggaggtgggcctggacacgccgtgggtccagaaagtaacgggctggggatgcgccaggggacggaagccagccgacgaggct-gctgcttgccaagcctgaggtctgggacaacgtgaagatcaacataaatcccagcaagaat----agaccctagaccaacgagtga-ac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314613 237 + 637652 AGTTTCTAAGTGGCAGGGCTAGGTGCCAggaagagcagctgaccccgcacaaggtcaggaaaagc-ggaggtgggcttggacacgctgtgggtccagaaagtaacgggctggggacgcgtcaggggacggaagccagctgacgaggctggctgcttgccaagcctgaggtctgggacaacgtgaagatcaacacaaatcccagcaagaatagacagaccctagaccaacaagtgaaac i gorGor5.CYUI01015435v1 C 0 C 0 s macFas5.chr13 5086210 233 - 111193037 AGTTTCTAAACCccagggctaggtgccaggaagagcagctgaccccgcacaaggttgggaaaagcaggaggtgggcctggacacgctgtgggtccagaaagtaatgggctggggatgcgtcaggggactgacgccagctaacgaggct-cctgcttgccaagcctgaggtctggaacaacgtgaagatcaaaataaattccagcaagaac----agaccctagaccaacaagtgaaac i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3477946 233 + 3644372 AGTTTCTAAACCCCAGGGCTAGGTGCCAggaagagcagctgaccccgcacaaggttgggaaaagcaggaggtgggcctggacacgctgtgggtccagaaagtaacgggctggggatgcgtcaggggacagacgccagctaacgaggct-cctgcttgccaagcctgaggtctggaacaacgtgaagatcaaaataaattccagcaagaac----agaccctagaccaacaagtgaaac i macNem1.NW_012011978v1 I 1645 C 0 s cerAty1.NW_012000820v1 3434607 233 - 10304083 AGTTTCTAAACCCCAGGGCTAGGTGCCAGGAAGAGCAGCTGACCCCGCACGAGGTTGggaaaagcaggaggtgggcctggacacgctgtgggtccagaaagtaatgggctggggatgcgtcaggggacagacgccagctaacgaggct-cctgcttgccaagcctgaggtctggaacaacgtgaagatcaaaataaattccagcaagaac----agaccctagaccaacaagtgaaac i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3535352 233 - 107702431 agtttctaaaccccagggctaggtgccaggaagagcagctgaccccgcacgaggtcgggaaaagcaggaggtgggcctggacacgctgtgggtccagaaagtaatgggctggggatgcgtcaggggacagaagccagctaacgaggct-cctgcttgccaagcctgaggtctggaacaacgtgaagatcaaaataaattccagcaagaac----agaccctagaccaacaagtgaaac i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1066068 233 + 1565135 AGTTTCTAAACCCCAGGGCTAGGTGCCAggaagagcagctgaccccgcacgaggttgggaaaagcaggaggtgggcctggacacgctgtgggtccagaaagtaatgggctggggatgcgtcaggggacagacaccagctaacgaggct-cctgcttgccaagcctgaggtctggaacaacgtgaagatcaaaataaattccagcaagaac----agatcctagaccaacaagtgaaac i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3428456 233 - 13651311 AGTTTCTAAACaccagggctgggtgccaggaagagcagctgaccccgcacgaggtcgggaaaggcaggaggtgggcctggacacgctgtgggtccagaaagtaatgggctggggatgcatcaggagacagaagccagctaacgaggct-cctgcttgccaagcctgaggtctggaacaacgtgaagatcaaaataaattccagcaagaac----agaccctacaccaacaagtgaaac i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3517654 229 - 108792865 agtttctaaacaccagggataggtgccaggaagagcagctgaccccacatgaggtcaggaaaagc---aggtgagcctggacatgctgtggagccacaaagtgacgcactgggaaggtgccaggggacagaagccagctaacaagtct-cctgctcaccaaggctgaggtctgggacaatgagaagatcaaaataaa-cccagcaagaat----ggaccacagaccaacaagtgaaac i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162451 232 - 7082604 agtttctaaacaccagggacaggtgccaggaagagcagctgaccccgcatgagggcagaaaaagcaggaggtgagcccggacacactgtggatccagaaagtgatgggctggggaggtgccaggggacagaagccagctaacgaggct-cctgcttgccaagtctgacgtttgggacaatgagaagatcaaaataaa-CCCAGCAAGACT----GGACCACAGACCAACAAGTGAAAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 649226 228 + 5243153 agtttctaaacaccaaggataggtgccaggaagagcagctgacccc-taagagggcaggaaaagc---aggtgagcctggacacactgtggatccagaaagtgacaggctggggaggtgccaggggacagaagccagctaacgaggct-cctgctcgccgagtctgaggcctgggacaacgagaagatcaaaataaa-cccagcaagaat----ggaccacagaccaacaagtgaaac i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3391676 232 + 7587287 AGCTTCTAAACACCAGGGATAGGTGCCAggaagagcagctgaccccgcatgaggtcaggaaaagcaggaggtgagcctggacatgctgtggatccagaaagtgacgggctggggagatgccaggagacagaagccagctaatgaggct-tctgctcaccaagtctgaggtctgggacaatgagaagatcaaaataaa-CCCAGCAAGAAT----GGACCACAGACCAACAAGTGAGAC i aotNan1.NW_018509326v1 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e rheMac8.chr13 3373724 1091 + 108979918 I e nomLeu3.chr19 3109882 115 + 81552678 I a score=98567.000000 s hg38.chr2_KI270769v1_alt 113337 10 + 120616 aagaaggcct s panTro5.chr2A 3577302 10 + 111504155 aagaaggcct i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3437659 10 + 114371477 aagaaggcct i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314850 10 + 637652 aagaaggcct i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3109997 10 + 81552678 AAGAAGGCCT i nomLeu3.chr19 I 115 C 0 s macFas5.chr13 5086443 10 - 111193037 aagaaggcct i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3478179 10 + 3644372 aagaaggcct i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3434840 10 - 10304083 aagaaggcct i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3535585 10 - 107702431 aagaaggcct i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1066301 10 + 1565135 aagaaggcct i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3428689 10 - 13651311 aagaaggcct i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3517883 10 - 108792865 aagaaggcct i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162683 10 - 7082604 AAGAAGGCCT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 649454 10 + 5243153 aagaaggcct i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3391908 10 + 7587287 AGGAAGGCCT i aotNan1.NW_018509326v1 C 0 I 123 e dasNov3.JH580157 682513 0 + 2232271 C e rheMac8.chr13 3373724 1091 + 108979918 I a score=125391.000000 s hg38.chr2_KI270769v1_alt 113347 35 + 120616 cca-gccccagtggatg-ccg---------------------------------------------agtgaacagagaaga--g s panTro5.chr2A 3577312 35 + 111504155 cca-gccccagtggatg-ccg---------------------------------------------agtgaacagagaaga--a i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3437669 35 + 114371477 cca-gccccagtggatg-ccg---------------------------------------------agtgaacagagaaga--a i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314860 35 + 637652 cga-gccccagtggatg-ccg---------------------------------------------agtgaacagagaaga--a i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3110007 37 + 81552678 CGAGGCCCCAGTGGATGCCCG---------------------------------------------AGTGAACAGAGAAGA--A i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5086453 35 - 111193037 cga-gccccagtggatg-cca---------------------------------------------agtgaacagggaaga--a i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3478189 37 + 3644372 cga-gccccagtggatg-cca---------------------------------------------agtgaacagggaagaaga i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3434850 35 - 10304083 cga-gccccagtggacg-gcg---------------------------------------------agtgaacagggaaga--a i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3535595 35 - 107702431 cga-gccccagtggacg-gcg---------------------------------------------agggaacagggaaga--a i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1066311 35 + 1565135 cga-gccccagtggacg-gcg---------------------------------------------agtgaacagggaaga--a i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3428699 35 - 13651311 gga-gccccagtggatg-ccc---------------------------------------------agtgaacagggaaga--a i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3517893 33 - 108792865 cgg-gcacc-gtgg-tg-gcg---------------------------------------------aatccacagcagggg--a i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162693 78 - 7082604 CGG-GCACC-GTGG-TG-GCGAGTGAACGGCAGAGGAGGGGACGCACCTAGGGCACCGTGGTGGCAAATCAACAGCAGAGG--A i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 649464 78 + 5243153 ggg-gcacc-gtgg-tg-gggagtgaacggcggaggaggggatgcacctcgggcaccgtggtggcgaatcaacagcagagg--a i cebCap1.NW_016107454v1 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e aotNan1.NW_018509326v1 3391918 123 + 7587287 I e rheMac8.chr13 3373724 1091 + 108979918 I a score=688578.000000 s hg38.chr2_KI270769v1_alt 113382 93 + 120616 ggggacatgcctcctgacagtgaaaa-ccaacccccgggtgagcgccactgcacggccatgacagtcacagcccacaaaggcaggaatcatcac s panTro5.chr2A 3577347 93 + 111504155 ggggacacgcctcctgacagtgaaaa-ccaacccccgggtgcgcgccattgcacggccatgacagtcacagcccacaaaggcaggaatcatcac i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3437704 93 + 114371477 ggggacacgcctcctgacagtgaaaa-ccaacccccgggtgagcgccattgcacggccatgacagtcatagcccacaaaggcaggaatcatcac i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314895 92 + 637652 ggggacatgcctcctgacagtgaaaa--caacccccgggtgagcgccattgcacggccatgacagtcacagcccacaaaggcaggaatcatcac i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3110044 94 + 81552678 GGGGACACGCCTCCTGACAGTGAAAACCCAACCCCCGGGTGAGCGCCATTGCATGGCCATGACAGTCACAGCCCACAAaggcaggaatcatcac i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5086488 93 - 111193037 ggggacacacttcctgacagtgaaaa-ccaacCCCCGGGTGAGTGCCATTGCACGGCCATGACACTCACAGCCCACAAAGGCAGGAAGCATCAA i macFas5.chr13 C 0 I 319 s macNem1.NW_012011978v1 3478226 93 + 3644372 gggggcacacttcctgacagtgaaaa-ccaacccccgggtgagtgccattgcacggccatgacactcacagcccacaaaggcaggaagcatcaa i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3434885 93 - 10304083 gtggacacgcttcctgacagtgaaaa-ccaacccccgggtgagtgccattgcacggccatgacactcacagcccacaaaggcaggacgcatcaa i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3535630 93 - 107702431 ggggacacgcttcccgacagtgaaaa-ccaacccccggatgagtgccattgcacggccatgacactcacagcccacaaaggcaggaagcatcaa i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1066346 93 + 1565135 ggggacacgcttcctgacagtgaaaa-ccaacccccgggtgagtgccattgcacggccatgacactcacagcccacaaaggcaggaagcatcaa i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3428734 93 - 13651311 ggggacacgcttcctgacagtgaaaa-ccaacccccgggtgagtgccactgcacggccatgacactcacagcccacaaaggcaggaatcgtcaa i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3517926 88 - 108792865 ggggacatgcctcccgacagtgaaac-cca---cccaggggagcaccactgctcgg-catgacagtcaca-cccacgaaggcaggaatcatcaa i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162771 88 - 7082604 GGGGACGCGCCTCCCGACAGGGAAAC-CCA---CCCCAGGGAGCACCACTGCGCGG-CATGACAGTCACA-CCCACAGaggcaggaatcatcaa i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 649542 88 + 5243153 ggggacacgcctcccgacagtgaaac-cca---ccccggggagccccactgcgtgg-catgacagtcaca-cccacgcaggcaggaatcacgaa i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3392041 88 + 7587287 GGGGACGTGACTCCCGACAGTGAAAC-CCA---CCCCGGGGAGCACCACTGCGCGG-CATGACAGTCACA-CCCACGAaggcaggaagcatcaa i aotNan1.NW_018509326v1 I 123 C 0 e dasNov3.JH580157 682513 0 + 2232271 C e rheMac8.chr13 3373724 1091 + 108979918 I a score=3005840.000000 s hg38.chr2_KI270769v1_alt 113475 332 + 120616 gacttacgaaaaacgttgagtgaaagtttgaggggaaatgggatattcatggtctaaaagta--actttccacacatttcttactagttacagaggaaaagaaaaggaactt--ccccatggagagacttgacggacgccgatttcacccagggcacgttgacatcagcagtgagggg-ccctcggacacgcttactcacaaca-------ccactgcgtaggatt-ccgct----acaaacacacgac----ctaacactgaggaaacCAGTGGCAATCACAAGATCGTCAGAAAATAAGGTTATTTTAGAAAAACAAAGAATAAGCCGGTATCAGCAAGAGGGTTTTATAC s panTro5.chr2A 3577440 332 + 111504155 gacttacgaaaaacgtcgagtgaaagtttgaggggaaatgggatattcacggtctaaaagta--actttccacacatttcttaccagttacagaggaaaagaaaaggaactt--ccccatggagagacttgacggacgccggcttcacccagggcacgctgacatcagcagtgagggg-CCCTCAGCCACGCTTGCTCACAACA-------CCACTGCGTAGGATT-CCGCT----ACAAACACACGAC----CTAACACTGAGGAAACCAGTGGCAATCACAAGATCGTCAGAAAATAAGGTTATTTTAGAAAAACAAAGAATAAGCCGGTATCAGCAAGAGGGTTTTATAC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3437797 331 + 114371477 gacttatgaaaaacgtcgagtgaaagtttgaggggaaatgggatattcacggtctaaaagta--actttccacacatttcttaccagttacagaggaaaagaaaaggaacttccccccatggagagacttgacggacgccggcttcacccagggcacgctgacatcagcagtgagggg-CCCTCGGACACGCTTGCTCACAA----------CACTGCGTAGGATT-CCGCT----ACAAACACACGAC----CTAACACTGAGGAAACCAGTGGCAATCACAAGATCGTCAGAAAATAAGGTTATTTTAGAAAAACAAAGAATAAGCCGGTATCAGCAAGAGGGTTTTATAC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 314987 332 + 637652 gacttacgaaaaacgttgagtggaagtttgaggggaaatgggatattcacggtctaaaagta--actttccgcacatttcttactagttacagaggaaaacaaaaggaactt---cccatggagagacttgacggatgccggcttcacccagggcatgctgacatcagcagtgagggg-CCCTCGGACACGCTTACTCACAC----------CACTGCGTAGGATT-CCGCT----ACAAACACACGACCTATCTAACACTGAGGAAACCAGTGGCAATCACAAGATCGTCAGAAAATAAGGTTATTTTAGAAAAACAAAGAATAAGCCTGTATCAGCAAGAGGGTTTTATAC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3110138 332 + 81552678 gacttatgaaaaacgatgagtgaaagtttgaggggaaatgggatattcatggtctaaaagta--actttccacacatttcttactagttacagaggaaaagaaaaggaactt--ccccacggagaaacttgacggacgccggcttcacccagggcacgctgacatcagcagtgagggg--CCTCGGACACGCTTACTCACAATG-------CCACTGCGTAGGGTTCCCGCT----ACAAACACACGAC----CTAACACTGAGGAAACCAGTGGCAATCACAAGATCGTCAGAAAATAAGGTTATTTTAGAAAAACAAAGGATAAGCCTGTATCAGCAGGAGGGTTTTATAC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3374815 348 + 108979918 gacttactaaaaacgttgggtgaaagtgtgaggggaaatgggatattcatggtctaaaagta--actctccacacgtatcttaccagttacagaggaaaagaaaaggaactt--ccccacggagaaacctgatggacgccggcttcacccaggtcacactgtcatcagcagtgagggg-cccttggacacgcttactcacaacgccaccgcccactgtgtaggattcccgctacatacaaacacacaacctgtctaacactgaggaaacCAGTGGCAATCACAAGATCATCAGAAAATAAGGTTATTTTAGAAAAACAAAGGATAAGCCTGCATCAGGAGGAGGGTTTTACAC i rheMac8.chr13 I 1091 C 0 s macFas5.chr13 5086900 348 - 111193037 GACTtactaaaaacgttgggtgaaagtgtgaggggaaatgggatattcatggtctaaaagta--actctccacacgtatcttaccagttacagaggaaaagaaaaggaactt--ccccacggagaaacctgatggacgccggcttcacccaggtcacactgtcatcagcagtgagggg-CCCTCGGACACGCTTACTCACAACGCCACCGCCCACTGTGTAGGATTCCCGCTACATACAAACACACAACCTGTCTAACACTGAGGAAACCAGTGGCAATCACAAGATCGTCAGAAAATAAGGTTATTTTAGAAAAACAAAGGATAAGCCTGCATCAGCAGGAGGGTTTTACAC i macFas5.chr13 I 319 C 0 s macNem1.NW_012011978v1 3478319 348 + 3644372 gacttactaaaaacgttgggtgaaagtgtgaggggaaatgggatattcatggtctaaaagta--actctccacacgtatcttaccagttacagaggaaaagaaaaggaactt--ccccacggagaaacctgatggacgccggcttcacccaggtcacactgtcatcagcagtgagggg-ccctcggacacgcttactcacaacgccaccgcccactgtgtaggattcccgctacatacaaacacacaacctgtctaacactgaggaaacCAGTGGCAATCACAAGATCGTCAGAAAATAAGGTTATTTTAGAAAAACAAAGGATAAGCCTGCATCAGCAGGAGGGTTTTACAC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3434978 348 - 10304083 gacttactaaaaacgttgggtgaaagtgtgaggggaaatgggatattcatggtctaaaagta--actctccacacgtatcttaccggttacagaggaaaagaaaaggaactt--ccccacggagaaacctgacggacgccggcttcacccaggtcacactgtcatcagcagtgaggga-cCCTCGGACACGCTTACTCACAACGCCAGCGCCCACTGTGTAGGATTCCCACTACATACAAACACACAACCTGTCTAACACTGAGGAAACCAGTGGCAATCACAAGATCGTCAGAAAATAAGGTTATTTTAGAGAAACAAAGGATAAGCCTGCATCAGCAGGAGGGTTTTACAC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3535723 344 - 107702431 gactctctaaaaacgttgggtgaaagtgtgaggggaaatgggatattcatgatctaaaagta--actctccacacgtgtcttactggttacagaggaaaagaaaaggaactt--ccccacggagaaactcgatggacgccggcttcacccaggtcacgctgccatcagcagtgagggg-ccctcagacacgcttactcacaacgccaccgcccactgtgtaggattcccgctacatacaaacacacaacctgtctaacactgaggaaacCAGTGGCAATCACAAGATTGTCAGAAAATAAGGTTATTTTAGAAAAACAAAGGATAA----GCATCAGCAGGAGGATTTTACAC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1066439 348 + 1565135 gacttactaaaaacgttgggtgaaagtgtgaggggaaatgggatattcatggtctaaaagta--actctccacatgtatcttaccggttacagaggaaaagaaaaggaactt--ccccacggagaaacctgacggacgccggcttcacccaggtcacactgtcatcagcagtgaggga-ccctcggacacgcttactcacaacgccaccgcccactgtgtaggattcccactacatacaaacacacaacctgtctaacactgaggaaacCAGTGGCAATCACAAGATCGTCAGAAAATAAGGTTATTTTAGAAAAACAAAGGATAAGCCTGCATCAGCAGGAGGGTTTTACAC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3428827 344 - 13651311 gacttactaaaaatgttgggtgaaagttggaggggaaatgggatattcatggtctaaaagta--actctccacacgtgtcttactggttacagaggaaaagaaaaggaactt--ccccatggagaaacctgatggacaccggcttcacccaggtcacgctgacatcagcagtgagggg-ccctcggacacgcttcctcacaacgccactgcccactgtgtaggattcctgctacacacaaacccacaac----ctaacactgaggaaacCAGTGGCAATCACAAGAGCGTCAGAAAATAAGGTTATTTTAGAAAAACAAAGGATAAGCCTGCATCAGCAAGAGGGTTTTACAC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3518014 336 - 108792865 gactcactaaaaatgttgactgagagtttgaggaaaaat-ggattttcatggtctaaaggta--actctccacacatttcttactagttacagaggaaagggaaaggaacct--ccccatggagaaccttgatggacgctggcttcacccaggccacgctgacatcagcaatgaggggacCCTCAGGCACACTTGCTCACAACG-------CCATCACGGAGGATTCCCACT----AAGAACACACAACCTATCCAACACCGAGGAAACCAATGGCAATCATAAAATCCTCAGAAAATAAGGTTATTCTAGAAAAAC-AAGGATAAGCCTGTATCAGCAAGCGGGTTTTACAC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3162859 335 - 7082604 gacttaataaaaacattgagtgaaagtttgaggaaagacgggattttcatggtctaaacgta--actctccacacatttcttactagttacagaggaaagggaaaggaactt--ccccatggggagccgtgacagactctggcttcacccaggccacgctgacatcagcaatgaggggaGCCTCAGGCATGCTTAGTCACAAGG-------CCATCACGGAGGATTCCCGCT----AAGAACACACAACCTATCCAACACAGAGGAAACCAATGGCAATCGTAAAATCATCAGAA---CAGATTATTTTAGAAAAACAAAGGATAAGCCTGTATCAGCAAGAGGGTTTTATAC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 649630 336 + 5243153 gacttactaaaaacactgagtgaaagtttgaggaaaaatgggattttcatggtctaaacgta--actcttcacacgtttcttactagtta-agaggaaagggaaaggaactt--ccccgtggagaaccttgatggacactggcttcacctagtccatgctgacatcagcaatgaggggacCCTCAGGCACGCTTAGTTACAACG-------CCATCACGGAGGATTCCCGCT----AAGAACACACAACCTATCCAACACCGTGGAAATCAATGGCAATCGT-AAATCGTCAGAAAATAAGGTTACTTTAGAAAAGCAAGGGATAAGCCTGTATCAGCAAGAGGGTTTTATAC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3392129 340 + 7587287 cacttactaaaaatgttaagtgaaagtttgaggaaaaatgggattttcgtggtctaaaagtaacactctccacacatttctgactaggtacagaggagagggaaaggaagtt--ccccatggagaacctcgatggacgctggcttcacccaggccacgctgacatcagcaatgaggggacCCTGAGGCACGCTTACTCACAACG-------CCATCACGGAGGATTCCCGCT----AAGAACACACAACCTATCCAACACCCAGGAAACCAATGGCAATCAGAAAATCATCAGAAAATAAGGTTATTTTAGAAAAACAAGGGATAAGCCTGTATCAGCAAGAGGCTTCTGTAC i aotNan1.NW_018509326v1 C 0 C 0 e dasNov3.JH580157 682513 0 + 2232271 C a score=2876366.000000 s hg38.chr2_KI270769v1_alt 113807 297 + 120616 CAGGAGAGAAGTAATTCCAGAAAACAGC--------AATGATGAAGCTAATGTAACT---TAC-AACATCAGCAGCAGGCCAGCCTCTGTTATGTGAGATAAAAC-GTGGCTGAG-AAGAGGCTGGCTCATCTCAACTTCCACGTCAGAGTCACACCATTTACATCCACCAGAATCTAATG-----------------------------AACTG-TAGGGCACTCAGTGAGAAATAAAG-----------------ACAATATGTGGACTCTAACCAGGAAGAATCATTTGACATAGAG-----------AAAAGGAAC-----TCACACGACAGA-------TCTATTTTTGAACAATTTCCACATCCTTAAGCTCTTC s panTro5.chr2A 3577772 297 + 111504155 CAGGAGAGAAGTAATTCCAGAAGACAGC--------AATGGTGAAGCTAATGTAACT---TAC-AACATCAGCAGCAGGCCAGCCTCTGTTATGTGAGATAAAAC-GTGGCTGAG-AAGAGGCTGGCTCATCTCAACTTCCACGTCAGAGTCACACCATTTACATCCACCAGAATCTAATG-----------------------------AATTG-TAGGGCACTCAGTGAGAAATAAAG-----------------ACAATATGTGGACTCTAACCAGCAAGAATCATTTGACATAGAG-----------AAAAGAAAC-----TCACACGACAGA-------TCTATTTTTGAACAATTTCCACATCCTTAAGCTCTTC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3438128 297 + 114371477 CAGGAGAGAAGTAATTCCAGAAGACAGC--------AATGGTGAAGCTAATGTAACT---TAC-AACATCAGCAGCAGGCCAGCCTCTGTTATGTGAGATAAAAC-GTGGCTGAG-AAGAGGCTGGCTCATCTCAACTTCCATGTCAGAGTCACACCATTTACATCCACCAGAATCTAATG-----------------------------AATTG-TAGGGCACTCAGTGAGAAATAAAG-----------------ACAATATGTGGACTCTAACCAGCAAGAATCATTTGACATAGAG-----------AAAAGAAAC-----TCACACGACAGA-------TCTATTTTTGAACAATTTCCACATCCTTAAGCTCTTC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 315319 299 + 637652 CAGGAGAGAAGTAATTCCAGAAGACAGC--------AATGATGAAGCTAATGTAACT---TACAAACATCAGCAGCAGGCCAGCCTCTGTTATGTGAGATAAAAC-GTGGCTGAGAAAGAGGCCGGCTCATCTCAACTTCCACGTCAGAGTCACACCATTTACATCCACCAGAATCTAATG-----------------------------AACTG-TAGGGCACTCGGTGAGAAATAAAG-----------------ACAACATGTGGACTCTAACCAGCAAGAATCATTTGACATAGAG-----------AAAAGGAAC-----TCACACGACAGA-------TCTATTTTTGAACAATTTCCACATCCTTAAGCTCTTC i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3110470 296 + 81552678 CGGGAGAGAAGTAATTCCAGAAGACAGC--------AATGATGAAGCTAATGTAACT---TAT-AACATCAGCAGCAGGCCAGCCTCTGCTA--TGAGATAAAAC-GTGGCTGAG-AAGAGGCCGGCTCATCTAAACTTCCACGTCAGAGTCACACCATTTACATCCACCAGAATCTAATG-----------------------------AATCG-TAGGGCGCTCAGTGAGAAATAAAG-----------------ACAATATGTGGACTCTAACCAGCAAGAATCATTTGACATAGAG-----------AAAAGGAACTCAAATCACACGACAG-----------ATTTTTGAAAAATTTCCACACCCTTACACTCTTC i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3375163 302 + 108979918 CAGGAGAGAAGTAATTCCAGAAGACAGC--------GATGGGGAAGCTAATGTAACT---TAC-AACATCAGCAGCAGGCCAGCCTCTGCTATGTGAGATCAAAC-GTGGCTGAG-AAGAGGCCGGCTCATCTAAACCTCCGCGTCAGAGTCACGCCATTTACATCCCCCAGAATCTCGTG-----------------------------AATCG-TACAGCATTCAGTGAGCAATAAAG-----------------ACAATATCTGGACTCCAACCAGCAAGAATCATCTGACATAGAG-----------CAAAGAGACTCGAATCACACGACAGA-------TCTATTTTTGAACAATTTCCACATTCTTAAGCTCTTC i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5087248 302 - 111193037 CAGGAGAGAAGTAATTCCAGAAGACAGC--------GATGGGGAAGCTAATGTAACT---TAC-AACATCAGCAGCAGGCCAGCCTCTGCTATGTGAGATCAAAC-GTGGCTGAG-AAGAGGCCGGCTCATCTAAACCTCCGCGTCAGAGTCACGCCATTTACATCCCCCAGAATCTCGTG-----------------------------AATCG-TACAGCATTCAGTGAGCAATAAAG-----------------ACAATATCTGGACTCCAACCAGCAAGAATCATCTGACATAGAG-----------CAAAGAGACTCGAATCACACGACAGA-------TCTATTTTTGAACAATTTCCACATTCTTAAGCTCTTC i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3478667 302 + 3644372 CAGGAGAGAAGTAATTCCAGAAGACAGC--------GATGGGGAAGCTAATGTAACT---TAC-AACATCAGCAGCAGGCCAGCCTCTGCTATGTGAGATCAAAT-GTGGCTGAG-AAGAGGCCGGCTCATCTAAACCTCCGCGTCAGAGTCACGCCATTTACATCCCCCAGAATCTCGTG-----------------------------AATCG-TACAGCATTCAGTGAGCAATAAAG-----------------ACAATATCTGGACTCCAACCAGCAAGAATCATCTGACATAGAG-----------CAAAGAGACTCGAATCACATGACAGA-------TCTATTTTTGAACAATTTCCACATTCTTAAGCTCTTC i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3435326 302 - 10304083 CAGGAGAGAAGTAATTCCAGAAGACAGC--------GATGGTGAAGCTAATGTAACT---TAC-AACATCAGCAGCCGGCCAGCCTCTGCTATGTGAGATCAAAC-GTGGCTCAG-AAGAGGCCGGCTCATCTAAACTTCCGCGTCAGAGTCACGCCATTGACATCCACCAGAATCTCGTG-----------------------------AATCG-TAGAGCACTCAGTGAGCAATGAAG-----------------ACAATATCTGGACTCTGGCCAGCAAGAATCATCTGACATAGAG-----------CAAAAGGACTCGAATCACACGACAGA-------TCTATTTTTGAACAATTTCCACATTCTTAAGCTCTTC i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3536067 302 - 107702431 CAGGAGAGAAGTAATTCCAGAAGACAGC--------GATAGTGAAGCTAATGTAACT---TAC-AACATCAGCAGCAGGCCAGCCTCTGCTTTGTGAGATCAAAC-GTGGCTGAG-AAGAGGCCGGCTCATCTAAACTTCCGCATCAGAGTCACGCCATTTACATCCACCAGAATCTCGTG-----------------------------AATCA-TAGAGCACTCAGTGAACAATAAAG-----------------ACAATATCTGGACTCTGACCAGCAAGAATCATCTGACATAGAG-----------CAAAGGGACTCGAATCACACGACAGA-------TCTATTTTTGAACAATTTCCACATTCTTAAGCTCTTC i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1066787 302 + 1565135 CAGGAGAGAAGTAATTCCAGAAGACAGC--------GATGGTGAAGCTAATGTAACT---TAC-AACATCAGCAGCCGGCCAGCCTCTACTTTGTGAGATCAAAC-GTGGCTGAG-AAGAGGCCGGCTCATCTAAACTTCCGCGTCAGAGCCACGCCATTTACATCCACCAGAATCTCGTG-----------------------------AATCG-TAGAGCACTCAGTGAGCAATAAAG-----------------ACAATATCTGGACTCTGGCCAGCAAGAATCATCTGACATAGAG-----------CAAAAGGACTCTAATCACACGACAGA-------TCTATTTTTGAACAATTTCCACATTCTTAAGCTCTTC i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3429171 302 - 13651311 CAGGAGAGAAGTAATTCCAGAAGACAGC--------GATGGTGAAGCTAATGTAACT---TAC-AGGATCAGCAGCAGGCCAGCCTCTGCTATGTGAGATCAAAC-GTGGCTGAG-AAGAGGCCAGCTCATCTCAACTTCCACGTCAGAGTCACACCATTTACACCCACCAGAATCTAGTG-----------------------------AATCG-CAGAGCACTCAGTGAGCGATAAAG-----------------ACGATATCTGGACTCTGACCAGCAAGAATCATCTGACATAGAG-----------CAAAGGGACTCGAATCACACGACAGA-------TCTATTTTTGAACAATTTCCACATTCTTAAGCTCTTC i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3518350 329 - 108792865 CAGGAGAGAAGTAATTCCGGAAGACAGC--------AATGATGACGCTAATGGAACT---TAC-AGCAT-AGCAGCAGGCCAGCCTCTGCTACGTGAGATAAAAC-GTGGCTAAG-AAGAGGCTGGCTCAT-T-AACTTGCACGTCAAAGCCACACCATTTACATCCACCAGAATCTAATGATCCTAATGATTCATGTAATGATGAATCTAATGATTAGGGCACTCAGTGAGAAATAAAG-----------------ACAAGATTTCTTCTCTGACCAGCAAGAATCATTTGGCATAGAG-----------CAAAGAAACTCAAATCACAGCACAGA-------TCTATTTTTGAACAACTTCCACATTCTTAGGCTCTTC i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3163194 307 - 7082604 CAGGAGAGAAGTAATTCCAGAAGGCAGC--------GATGATGAAGCTAATGTAACT---CAC-AACAT-AGCAGCAGGCCAGCCTCTGTTAAGTGAGATAAAAC-GTGGCTAAG-AAGAGGC-AGCTCAT-TAAACTTCCACGTCAAAGCCACACCATTTACATCCACCAGAATCTAATG-----------------------------AATCGTTAGGGCACTCAGTGAGAAATAAAG-----------------ACAAGATTTGTTCTCTGACCAGCAAGAATCATTTGACACAGAT-----------CAAAGGAACTCAAATCACACGACAGAACAATTCTACATTTTTGAACGATTTCCACATTCTTAGGCTCTTC i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 649966 301 + 5243153 CAGGAGAGAAGTAATTCCAGAAGACAGC--------GATGATGAAGCTAAGGTGACT---CAC-AACAT-AGCAGCAGGCCAGCCTCTGCCACGAGAGGTAAAAC-GTGGCCAAC-AAGAGGCCAGCTCAT-TAAACTTCCACGTCAAAGCCACACCATCTACCTCCACCAGAATCTAATG-----------------------------AATCGTTAGGGCACTCAGTGAGAAATAAAG-----------------ACAAGATTTGTTCTCTGACCAGCAAGAATCATTTGACATAGAG-----------CAAAGGAAGGCAAATCACACGACAGA-------TCTATTGTTGAACAATTTCCACATTCTTAGGCTCTTC i cebCap1.NW_016107454v1 C 0 C 0 s aotNan1.NW_018509326v1 3392469 301 + 7587287 CAGGAGAGACGTAATTCCAGAAGACAGC--------GATGATGAAGCTAATGTAACT---TAC-AGCAT-AGCAGCAGGCCAGCCTCTGCTACGTGAGATAAAAC-GTGGCTAAG-AAGAGGCCGGCTCAT-TAAAGTTCCACGTCAAAGCCACACCATTTACATCCACCAGAATCTAATG-----------------------------AATCGTTAGGGCACTCAGTGAGAAATGTCT-----------------ACAGGACTTGTTCTCTGACCAGCAAGAATCATTTGACATAGAG-----------CGAAGGAACTCAAATCACATGACAGA-------TCTATTTTTGAACAATTTCCACATTCTTAGGCTCTTC i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 682513 338 + 2232271 TAGAAGAGAAGC--TTCTAGACTATATTTGCGTCTAGATGAAGAAAATAATATAACTACCTACTAACACTAATAACAGG-TAATATCTTCTACATAAGATAAAACAACTGCTAAG-AAGAGGTTGGATATTCTAAAATTCCAAGTAAGAATCATGCCATTTAAATCCAAGAGAATTTAATG-----------------------------AATCATGACGTCACTTAGTGAGAATTAAAGTAATTCTGTAAAATATTACAACATTTGGACTCTGACTGGCAAGGATAATTAGACAAAAAGAGATTTAAAACAAAATAAGAGCTAATCACACAAAACA-------TCTATATTTAAATAATTTCCGTATTCT---GCttttt i dasNov3.JH580157 C 0 I 249 a score=251528.000000 s hg38.chr2_KI270769v1_alt 114104 22 + 120616 TGCTCTTAGTTCTATCTGGTAT s panTro5.chr2A 3578069 22 + 111504155 TGCTCTTAGTTCTATCTGGTAT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3438425 22 + 114371477 TGCTCTTAGTTCTATCTGGTAT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 315618 22 + 637652 TGCTCTTAGTTCTATCTGATAT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3110766 22 + 81552678 TGCTCTTAGTTCTATCTGGTAT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3375465 22 + 108979918 TGCTCTTAGTTCTATCTGGTAT i rheMac8.chr13 C 0 C 0 s macFas5.chr13 5087550 22 - 111193037 TGCTCTTAGTTCTATCTGGTAT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3478969 22 + 3644372 TGCTCTTAGTTCTATCTGGTAT i macNem1.NW_012011978v1 C 0 C 0 s cerAty1.NW_012000820v1 3435628 22 - 10304083 TGCTCTTAGTTCTATCTGGTAT i cerAty1.NW_012000820v1 C 0 C 0 s chlSab2.chr14 3536369 22 - 107702431 TGCTCTTAGTTCTATCTGGTAT i chlSab2.chr14 C 0 C 0 s manLeu1.NW_012104432v1 1067089 22 + 1565135 TGCTCTTAGTTCTATCTGGTAT i manLeu1.NW_012104432v1 C 0 C 0 s colAng1.NW_012118821v1 3429473 22 - 13651311 TGCTCTTAGCTCTATCTGGTAT i colAng1.NW_012118821v1 C 0 C 0 s calJac3.chr14 3518679 22 - 108792865 TGCTCTTAGTTCTGTCTGGTAT i calJac3.chr14 C 0 C 0 s saiBol1.JH378218 3163501 22 - 7082604 TGCTCTTAGTTCTGTCGGGTAT i saiBol1.JH378218 C 0 C 0 s cebCap1.NW_016107454v1 650267 22 + 5243153 TGCTCTTAGTTCTGTCTGGTAT i cebCap1.NW_016107454v1 C 0 N 0 s aotNan1.NW_018509326v1 3392770 22 + 7587287 TGCTCTTAGTTCTGTCTGGTAT i aotNan1.NW_018509326v1 C 0 C 0 s dasNov3.JH580157 683100 22 + 2232271 TGTTCTTAGTTTAACTTGTCAT i dasNov3.JH580157 I 249 C 0 a score=194115.000000 s hg38.chr2_KI270769v1_alt 114126 23 + 120616 TGTCGGTTCACCTGCGTATGTTT s panTro5.chr2A 3578091 23 + 111504155 TGTCGGTTCACCTGCGTATGTTT i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3438447 23 + 114371477 TGTCGGTTCACCTGCGTATGTTT i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 315640 23 + 637652 TGTCGGTTCACCTGCATACGTTT i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3110788 23 + 81552678 TGTTGGTTCACCTGAGTATGTTT i nomLeu3.chr19 C 0 C 0 s rheMac8.chr13 3375487 23 + 108979918 TGTCGGTTCACCTGCGTATGTTT i rheMac8.chr13 C 0 N 0 s macFas5.chr13 5087572 23 - 111193037 TGTCGGTTCACCTGCGTATGTTT i macFas5.chr13 C 0 C 0 s macNem1.NW_012011978v1 3478991 23 + 3644372 TGTCGGTTCACCTGCGTATGTTT i macNem1.NW_012011978v1 C 0 N 0 s cerAty1.NW_012000820v1 3435650 23 - 10304083 TGTCAGTTCACCTGCGTATGTTT i cerAty1.NW_012000820v1 C 0 N 0 s chlSab2.chr14 3536391 23 - 107702431 TGTCAGTTCACCTGTGTATGTTT i chlSab2.chr14 C 0 N 0 s manLeu1.NW_012104432v1 1067111 23 + 1565135 TGTCAGTTCACCTGCGTATGTTT i manLeu1.NW_012104432v1 C 0 N 0 s colAng1.NW_012118821v1 3429495 23 - 13651311 TGTCAGTTCACCCGCGTATGTTT i colAng1.NW_012118821v1 C 0 N 0 s calJac3.chr14 3518701 23 - 108792865 GGTTTGTTCACTTACGTACGTTT i calJac3.chr14 C 0 N 0 s saiBol1.JH378218 3163523 23 - 7082604 GGTTTGTTCACTTACGTATTTTT i saiBol1.JH378218 C 0 C 0 s aotNan1.NW_018509326v1 3392792 23 + 7587287 GGTTTGTTCACTTACGTATGTTT i aotNan1.NW_018509326v1 C 0 N 0 s dasNov3.JH580157 683122 23 + 2232271 TCTTGGTCCATCTACTAATGTTT i dasNov3.JH580157 C 0 C 0 a score=2907.000000 s hg38.chr2_KI270769v1_alt 114149 3 + 120616 GTA s panTro5.chr2A 3578114 3 + 111504155 GTA i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3438470 3 + 114371477 GTA i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 315663 3 + 637652 GTA i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3110811 3 + 81552678 GTA i nomLeu3.chr19 C 0 C 0 s macFas5.chr13 5087595 3 - 111193037 Cta i macFas5.chr13 C 0 N 0 s saiBol1.JH378218 3163546 3 - 7082604 Cta i saiBol1.JH378218 C 0 N 0 s dasNov3.JH580157 683145 3 + 2232271 GCC i dasNov3.JH580157 C 0 C 0 a score=7015.000000 s hg38.chr2_KI270769v1_alt 114152 7 + 120616 TTGTTGG s panTro5.chr2A 3578117 7 + 111504155 TTGTTGG i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3438473 7 + 114371477 TTGTTGG i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 315666 7 + 637652 TTGTCGG i gorGor5.CYUI01015435v1 C 0 C 0 s nomLeu3.chr19 3110814 7 + 81552678 TTGTTGG i nomLeu3.chr19 C 0 C 0 s dasNov3.JH580157 683148 7 + 2232271 CTTTTAG i dasNov3.JH580157 C 0 N 0 a score=282934.000000 s hg38.chr2_KI270769v1_alt 114159 357 + 120616 TTCACCTGTGTATGTCTGTATTGTCTGTTCGCCTGCGTATGTTTGTATTGTCTGTTCACCTGTGTATGTTTGTACTGTTTGTTCACCTGTGTATGTTTGTATTGTTGGTTCACCTGAGTATGTTTCTATTGTTGGCTCACCTGTGTATGTCTGCATTGTTGGTTCACCTGCGTATGTTTGTATTGTCGGTTCACCTGCGTATGTTTGCGTTGTTGGTTCACCTGAGTATGTTTGCATTGTCAGTTCACCTGTGTATGTTTGTATTTTCTGTTCACCTGTGTATGTTTGTATTGTCTGTTCACCTGTGTATGTTTGTATTGTTGGTTCACCTGAGTATGTTTGCATTGTTGGTTCACC s panTro5.chr2A 3578124 330 + 111504155 TTCACCTGTGTATGTTTGTATTGTCTGTTCGCCTGCGTATATTTGTATTGTCTGTTCACCTGTGTATGTTTGTACTGTTTGTTCACCTGTGTATGTTTGTATTGTTGGTTCACCTGAGTATGTTTCTATTGTTGGTTCACCTGTGTATGTCTGCATTGTCGGTTCACCTGTGTATGTTTGTATTGTCGGTTCACCTGCGTATGTTTGCGTTGTTGGTTCACCTGAGTATGTTTGCATTGTCA---------------------------GTTCACCTGTGTATGTTTGTATTGTCTGTTCACCTGTGTATGTTTGTATTGTCGGTTCACCTGAGTATGTTTGCATTGTTGGTTCACC i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3438480 357 + 114371477 TTCACCTGTGTATGTTTGTATTGTCTGTTTGCCTGCGTATATTTGTATTGTCTGTTCACCTGTGTATGTTTGTACTGTTTGTTCACCTGTGTATGTTTGTATTGTTGGTTCACCTGAGTATGTTTCTATTGTTGGTTCACCTGTGTATGTCTGCATTGTCGGTTCACCTGTGTATGTTTGTATTGTCGGTTCACCTGCGTATGTTTGCGTTGTTGGTTCACCTGAGTATGTTTGCATTGTCAGTTCACCTGTGTATGTTTGTATTGTCTGTTCACCTGTGTATGTTTGTATTGTCTGTTCACCTGTGTATGTTTGTATTGTTGGTTCACCTGAGTATGTTTGCATTGTTGGTTCACC i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 315673 353 + 637652 TTCACCTGTGTATGTTTGTATTGTCTGTTCGCCTGCGTATGTTTGTATTGTCTGTTCACCTGCGTATGTTTGTATTGTCTGTTCACCTGTGTATGTTTGTATTGCTGGTTCACCTGAGTATGTTTCTACTGTTGGTTCACCTGTGTATGTCTGCATTGTCGGTTCACCTGTGTATGTTTGTATTGTCGGTTCACCTGCGTATGTTTGCGTTGTCGGTTCACC----TATGTTTGCATTGTCGGTTCACCTGTGTATGTTTGTATTGTCTGTTCACCTGTGTATGTTTGTATTGTCTGTTCACCTGTGTATGTTTGTATTGTTGGTTCACCTGAGTATGTTTGCATTGTTGGTTCACC i gorGor5.CYUI01015435v1 C 0 I 4 s nomLeu3.chr19 3110821 357 + 81552678 TTCACCTGAGTATGTTTGCATTGTTGGTTCACCTGAGTATGTTTGCATTGTTGGTTCACCTGCATATGTTTGTATTGTTGGTTCACCTGCGTATGTCTGCATTGTCGGTTCACCTGAGTATGTTTGTATTGTTGGTTCCCCTGAGTATGTTTGCATTGTTGGTTCATCTGAGTATGTTTGCATTGTTGGTTCACCTGAGTATGTTTGCATTGTTGGTTCATCTGAGTATGTTGGTACTGTTGGTTCACCTGAGTATGTTTGCACTGTTGGTTCACCTGAGTATGTCGGTATTGTTGGTTCACCTGAGTATGTCGGTATTGTTGGTTCACCTGAGTATGTCTGCATTGTTGGTTCACC i nomLeu3.chr19 C 0 I 652 a score=651514.000000 s hg38.chr2_KI270769v1_alt 114516 746 + 120616 TATGTTTGTATTGTTGGTTCACCTGTGTATGTCTGCATTGTTGGTTCACCTGTGTATGTTTGTATTGTCAGTTTACCTGCGTATGTTTATATTGTTTGTTCACCTGCATATGTTTTCtaaagagcttagaagccaccactccatcctatcaagtaaaagcagaacaaactgaaaaaccaactctttttaaatctgtaagagaagcgaagtcacagagcaaaccacagcccctcacactggagagacaggcagacagaaagatccacacctaaccagagcagaaacccctatgggaagcagggctggggtcgagaaacccaaactgtacttgaccagttgggggctcagtgtagacaagtctgagagctaaaaaaaactccagacccagtcatcaggggcctcacacttttgtaaattttacctgcaaaagctctactgggtcccaacagtgagtatcag-ggaaaattccctgtgcttctggcagagggagggaaagggggccattctgaagtctatcaggatacatctgaaatctcttcttatgaaggcctcaactcaggagagctcagccagccagatcccagcctgctgggctttcatgagagcctgacctgggtgaagggaaacacgaaactccagccccttcggaactccatgttatggactgaatactatgatccccctcccccgggtccatgggctgaaaccctaccctctaatatggtggtattagcaggtggtgtctt s panTro5.chr2A 3578454 746 + 111504155 TATGTTTGTATTGTTGGTTCACCTGTGTATGTCTGCATTGTTGGTTCACCTGTGTATGTTTGTATTGTCAGTTTACCTGCGTATGTTTATATTGTTTGTTCACCTGCATATGTTTTCtaaagagcttagaagtcaccactccatcctatcaagtaaaagcagaacaaactgaaaaaccaactctttttaaatctgtaagagaagcgaagtcacagagcaaaccacagcccctcacactggagagacaggcagacagaatgatccacacctaaccagagcagaaacccctatgggaactagggctggggtcgagaaatccaaactgtacttgaccagttgggggctcagtgtagacaagtctgagagctataaaaaactccagacccagtcatcaggggcctcacacttttgtaaattttacctgcaaaagctctactgggtcccaacagtgaatatcag-ggaaaattccctgtgcttctggcagagggagggaaagggggccattctgaagtctatcaggatacatctgaaatctcttcttatgaaggcctcaactcaggagagctcagccagccagatcccagcctgctgggctttcatgagagcctgacctgggtgaagggaaacacgaaactccagccccttcggaactccatgttatggactgaatactatgatccccctcccccgggtccatgggctgaaaccctaccctctaatatggtggtattagcaggtggtgtctt i panTro5.chr2A C 0 C 0 s panPan2.chr2A 3438837 746 + 114371477 TATGTTTGTATTGTTGGTTCACCTGTGTATGTCTGCATTGTTGGTTCACCTGTGTATGTTTGTATTGTCAGTTTACCTGCGTATGTTTATATTGTTTGTTCACCTGCATATGTTTTCtaaagagcttagaagtcaccactccatcctatcaagtaaaagcagaacaaactgaaaaaccaactctttttaaatctgtaagagaagcgaagtcacagagcaagccacagcccctcacactggagagacaggcagacagaaagatccacacctaaccagagcagaaacccctatgggaaccagggctggggtcgagaaacccaaactgtacttgaccagttgggggctcagtgtagacaagtctgagagctaaaaaaaactccagacccagtcatcaggggcctcacacttttgtaaattttacctgcaaaagctctactgggtcccaacagtgagtatcag-ggaaaattccctgtgcttctggcagagggagggaaagggggccattctgaagtctatcaggatacatctgaaatctcttcttatgaaggcctcaactcaggagagctcagccagccagatcccagcctgctgggctttcatgagagcctgacctgggtgaagggaaacacgaaactccagccccttcggaactccatgttatggactgaatactatgatccccctcccccgggtccatgggctgaaaccctaccctctaatatggtggtattagcaggtggtgtctt i panPan2.chr2A C 0 C 0 s gorGor5.CYUI01015435v1 316030 742 + 637652 TATGTTTGTATTGTTGGTTCACCTGTGTATGTCTGCATTGTTGGTTCACCTGTATATGTTTGTATTGTCAGTTTACCTGCGTATGTTTATATTGTTTATTCACCTGCGTATGTTTTCtaaagagcttagaagtcaccactccatcctatcaagtaaaagcagaacaaactgaaaaaccaactc-ttttaaatctgtaagagaagcgaagtcacagagcaaaccaccg-ccctcacactggagagacaggcagacagaaagatccacacctaaccagagcagaaacctctatgggaaccagggctggggtcaagaaacccaaactgtacttgaccagttgggggctcagtgtagacaagtctgagagctaaaaaaaactccagacccagtcatca-gggcctcacacttttgtaaattttacctgcaaaagctctactgggtcccaacagtgaatatcag-ggaaaattccctgtgcttctggcagagggagggaaagggggacattctgaagtctatcaggatacatctgaaatctcttcttatgaaggcctcaactcaggagagctcagccagccagat-ccagcctgctgggctttcatgagcgcctgacctgggtgaagggaaacacgcaactccagccccttcggaactccatgttatggactgaatactatgatccccctcccccgggtccatgggctgaaaccctaccctctaatatggtggtattagcaggtggtgtctt i gorGor5.CYUI01015435v1 I 4 C 0 s nomLeu3.chr19 3111830 727 + 81552678 TATGTCTGCATTGTTGGTTCACCTGAgtatgtttgtattgttggttcacctgcgtatgtttgtattgttggtttacctgcgtatgtttgtattgtttgttCACCTGCGTATGTTTTCTAAGAAGCTTAGTAGTCACCACTCCATCCTATCAA------------------gaaaaaccaactctttttaaatctgtaagagaagtgaagtcacagagcaaaccatcgcccctcacactgtagagacaggcagacagaaagagccacgcctaaccagagcagaaacccctatgggaaccagggctggggtcgagaaacgcaaactgtacttgaccagttgggggctcagtgtagacaagtctgagagctaaaaaaaactccagacccagtcatcaggggcttcgcacttttgtaaattttacctgcaaaagctctactgggtcccaacagtgaatatcagagaaaaattccctgtgcttctggcagagggagggaaaggaggccattctgaagtctatcaggatacatctgaaatctcttcttatgaaggcctcaactcaggagacctcagccagccagatcccagcctgctgggctttcatgagagtctgacctgggtgaagggaaacacacaactccagcccctccagAACTCCGTGTTATGGACTGAATACTATGACCCCCCTCCGCCCCGTCCAT-GGCTGAAACCCTACCCTCTCATATGGTGGTATTGGCTGGT-GTGTCTT i nomLeu3.chr19 I 652 N 0 a score=606532.000000 s hg38.chr2_KI270769v1_alt 115262 1100 + 120616 tgggaggtaattaggattagataacgtgatgagggtggagccctcatgaatgggattagtgtccttataaaagtcccaaaagagcttgcttcttctacccacccaccatgtgaaaacacagtcgtctataaaccaggaagcagctctcacaagacaccaaagctgccagtgtcctgaccttgggcgtccctgcctgcagactgtgagaaataaatgtttgttgtttaagccacccagtttatggtatttgcttatggaagcctgagctgactaagacaggagaggaagggaaaccccaagtccagctgcttccagccatcatgtcccacttaaaggagggagtctgagaaacgctggtgaagttcacagcccagaggcacaggctgactacaagactgagacTgtcctagctaatgcaatatgaagaaatataaggcatactgattagaaaggaagaaataaaactccctttgctcgcagatggtatcactgtctaggtaggaaatccaaaagaatcaacaaagaaaagctcctggaactaacaagcaatcatggcaagtttgcaggatacagggttaatacacaaaagttaatcactttcctatataccagaaacacagcaagtgatatttgaaattcaaaacacaaaaccatatacatttgcacccccaaaaatgaaatgcttaggtatgaatctaac-aaaatatgcataagatctacaagaaaactacaaaactctgatgaaacaaatcaaaaactaaacaaatggagagaaattccaagttcatgaataggaagactcagtagtgttaagatgtccatttttccaaacttaatctataggttcagtacaatccaattcaaagttccagctagttattttgcacatatcagcaaactgactgtgaagtttatctggagaggcacaagacccagaatacccaacacaatattgaagaagaacaaagttgaagaaccgacactacctgacttcaagacttactatcatgctatagtagtcaagactgagacactggtgaaatagtagaaaaatagatcaactgatctttgacaaaggaccaaaggcaatacaatgaaaa s panTro5.chr2A 3579200 1100 + 111504155 tgggaggtaattaggattagataacgtgatgagggtagagccctcataaatgggattagtgtccttataaaagtcccaaaagagcttgcttcttctatccacccaccatgtgaaaacacagtcatctataaaccaggaagcagctctcacaagacaccaaagctgccagtgtcctgacctcgggcgtccctgcctgcagactgtgagaaataaatgtttgttgtttaagccacccagtttatggtatttgcttatggaagcctgagctgactaagacaggagaggaagggaaaccccaagtccagctgcttccagccatcatgtcccacttaaaggagggagtctgagaaacgctggtgaagttcacagcccagaggcacaggctgactacaagactgagacTgtcctagctaatgcaatatgaagaaatataaggcatactgattagaaaggaagaaataaaactccctttgctggcagacggtatcactgtctaggtaggaaatccaaaagaatcaacaaagaacagctcctggaactaacaagcaatcatggcaagtttgcaggatacagggttaatacacaaaagttaatcactttcctatataccagaaacacagcaagtgatatttgaaattcaaaacacaaaaccgtatacatttgcacccccaaaaatgaaatgcttaggtatgaatctaac-aaaatatgcataagatctataagaaaactacaaaactctgatgaaacaaatcaaaaactaaacaaatggagagaaattccaagttcatgaataggaagactcagtagtgttaagatgtccatttttctaaacttaatctataggttcagtacaatccaattcaaagttccagctagttattttgcacatatcagcaaactgactgtgaagtttatctggagaggcacaagacccagaatacccaacacaatattgaagaagaacaaagttgaagaaccgacactacctgacttcaagacttactagcatgctatagtagtcaagactgagacaccggtgaaatagtagaaaaatagatcaattgatctttgacaaaggaccaaaggcaatacaatgaaaa i panTro5.chr2A C 0 N 0 s panPan2.chr2A 3439583 1100 + 114371477 tgggaggtaattaggattagataacgtgatgagggtagagccctcatgaatgggattagtgtccttataaaagtcccaaaagagcttgcttcttctacccacccaccatgtgaaaacacagtcatctataaaccaggaagcagctctcacaagacaccaaagctgccagtgtcctgaccttgggcgtccctgcctgcagactgtgagaaataaatgtttgttgtttaagccacccagtttatggtatttgcttatggaagcctgagctgactaagacaggagaggaagggaaaccccaagtccagctgcttccagccatcatgtcccacttaaaggagggagtctgagaaacgctggtgaaggtcacagcccagaggcacaggctgactacaagactgagacTgtcctagctaatgcaatatgaagaaatataaggcatactgattagaaaggaagaaataaaactccctttgctcgcagatggtatcactgtctaggtaggaaatccaaaagaatcaacaaagaacagctcctggaactaacaagcaatcatggcaagtttgcaggatacagggttaatacacaaaagttaatcactttcctatataccagaaacacagcaggtgatatttgatattcaaaacacaaaaccatatacatttgcacccccaaaaatgaaatgcttaggtatgaatctaac-aaaatatgcataagatctacaagaaaactacaaaactctgatgaaacaaatcaaaaactaaacaaatggagagaaattccaagttcatgaataggaagactcagtagtgttaagatgtccatttttccaaacttaatctataggttcagtacaatccaattcaaagttccagctagttattttgcacatatcagcaaactgactgtgaagtttatctggagaggcacaagacccagaatacccaacacaatattgaagaagaacaaagttgaagaaccgacactacctgacttcaagacttactagcatgctatagtagtcaagactgagacaccggtgaaatagtagaaaaatagatcaattgatctttgacaaaggaccaaaggcaatacaatgaaaa i panPan2.chr2A C 0 N 0 s gorGor5.CYUI01015435v1 316772 1100 + 637652 tgggaggtaattaggattagataacgtgatgagggtggagccctcatgaatgggattagtgtccttataaaagtcccaaaagagcttgcttcttctacccacccaccatgtgaaaacacagtcatctataaaccaggaagcagctctcacaagacaccaaagctgccagtgtcctgaccttgggcgtccctgcctgcagactgtgacaaataaatgtttgttgtttaagccacccagtttatggtatttgcttatggaagcctgagctgactaagacaggagaggaagggaaaccccaagtccagccgcttccagccatcatgtcccacttaaaggagggagtctgagaaacgctggtgaagttcacagcccagaggcacaggctgactataagactgagacTgtcctagctaatgcaatatgaagaaatataaagcatactgattagaaaggaagaaataaaactccctttggtcgcagatggtatcactgtctaggtaggaaatccaaaagaatcaacaaagaaaagctcctggaactaacaagcaatcatggcaagtttgcaggatacagggttaatacacaaaagttaatcactttcatatataccagaaacacagcaggtgatatttgaaattcaaaacacaaaaccatatacatttgcacccccaaaaatgaaatgcttaggtatgaatcaaacaaaaatatgcataagatctacaagaaaactacaaaactctgatgaaacaaatcaaaaactaaataaatggagagaaattccaagttcatgaacaggaagactcagtagtgttaagatgtccatttttcccaacttaatctataggttcagtacaatccaattcaaagttccagctagttattttgcacatatcagcaaactgactgtgaagtttatctggagaggcacaagacccagaatacccaacacaatattgaagaagaacaaagttgaagaaccgacacta-ctgacttcaagacttactatcatgctatagtaatcaagattgagacattggtgaaatagtagaaaaatagatcaattgatctttgacaaaggaccaaaggcaatacaatgaaaa i gorGor5.CYUI01015435v1 C 0 C 0 a score=273.000000 s hg38.chr2_KI270769v1_alt 116362 3 + 120616 aaa s gorGor5.CYUI01015435v1 317872 3 + 637652 aaa i gorGor5.CYUI01015435v1 C 0 N 0